HHsearch alignment for GI: 254780750 and conserved domain: cd03223
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.99 E-value=0.00025 Score=50.80 Aligned_cols=120 Identities=28% Similarity=0.306 Sum_probs=67.6
Q ss_pred EEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHH-CCCCCCCEEEEEE--------E----
Q ss_conf 44345635877776643999967784407899999999999997198530353-2068221056765--------2----
Q gi|254780750|r 635 IANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASY-AHIGIVDKLFSRV--------G---- 701 (920)
Q Consensus 635 VpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~-a~i~~~D~IftRi--------G---- 701 (920)
T Consensus 16 il~~isl~i----~~Ge~v~i~G~sGsGKSTLl~~l--------~Gl~~~~~G~i~~~~~~~i~~-v~Q~~~l~~~tl~e 82 (166)
T cd03223 16 LLKDLSFEI----KPGDRLLITGPSGTGKSSLFRAL--------AGLWPWGSGRIGMPEGEDLLF-LPQRPYLPLGTLRE 82 (166)
T ss_pred EEEEEEEEE----CCCCEEEEECCCCCCHHHHHHHH--------CCCCCCCCCEEEECCCCCEEE-ECCCCCCCCCCHHH
T ss_conf 894458898----89999999958999889999998--------698769986799769987999-85646658875999
Q ss_pred -----CCCCCCCCCCHHHHHHHHH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHH
Q ss_conf -----3766113853289999999--999995899856999325889880567999999999999726984999748757
Q gi|254780750|r 702 -----SADNLASGRSTFMVEMIET--ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHE 774 (920)
Q Consensus 702 -----a~D~l~~g~STF~vEm~e~--~~IL~~at~~SLVllDElGrGTst~DG~aiA~aile~l~~~~~~~~lfaTHy~e 774 (920)
T Consensus 83 ~l~~p~~~~LSGG------qkQRvalARal--~~~p~iliLDEp---Ts~LD~~~~-~~l~~~l~~~-~~Tvi~VtH~~~ 149 (166)
T cd03223 83 QLIYPWDDVLSGG------EQQRLAFARLL--LHKPKFVFLDEA---TSALDEESE-DRLYQLLKEL-GITVISVGHRPS 149 (166)
T ss_pred HHHCCCCCCCCHH------HHHHHHHHHHH--HCCCCEEEECCC---CCCCCHHHH-HHHHHHHHHC-CCEEEEEECCHH
T ss_conf 9636154678999------99999999999--649999997585---332899999-9999999977-998999943469
Q ss_pred HHHHHH
Q ss_conf 976643
Q gi|254780750|r 775 LTDLSK 780 (920)
Q Consensus 775 L~~l~~ 780 (920)
T Consensus 150 ~~~~aD 155 (166)
T cd03223 150 LWKFHD 155 (166)
T ss_pred HHHCCC
T ss_conf 997299