HHsearch alignment for GI: 254780750 and conserved domain: cd03224
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.89 E-value=0.00012 Score=53.09 Aligned_cols=133 Identities=23% Similarity=0.302 Sum_probs=72.3
Q ss_pred EEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH--------------------HHHHCC-CCCCHHHCCCCCC
Q ss_conf 4434563587777664399996778440789999999999--------------------999719-8530353206822
Q gi|254780750|r 635 IANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV--------------------IMAQMG-SYVPASYAHIGIV 693 (920)
Q Consensus 635 VpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~v--------------------ilAQiG-~fVPA~~a~i~~~ 693 (920)
T Consensus 15 ~L~~vs~~v----~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~gi~~v~Q~~------ 84 (222)
T cd03224 15 ILFGVSLTV----PEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGR------ 84 (222)
T ss_pred EECCEEEEE----CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHCCEEEECCCC------
T ss_conf 981408998----8998999999999859999999977988996099999999999999999975938963566------
Q ss_pred CEEEEEEECCCCCCCCCCH-----HH---HHHHH----HHHHH-------------------HHCCCCCEEEEECCCCCC
Q ss_conf 1056765237661138532-----89---99999----99999-------------------958998569993258898
Q gi|254780750|r 694 DKLFSRVGSADNLASGRST-----FM---VEMIE----TASIL-------------------NQATNQSFVILDEIGRGT 742 (920)
Q Consensus 694 D~IftRiGa~D~l~~g~ST-----F~---vEm~e----~~~IL-------------------~~at~~SLVllDElGrGT 742 (920)
T Consensus 85 -~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL~~~P~lllLDEPt~gL 163 (222)
T cd03224 85 -RIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL 163 (222)
T ss_pred -CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf -5688990999999987635813599999999988663799874845448999999999999996499999993865479
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH-HHHH
Q ss_conf 8056799999999999972698499974875797-6643
Q gi|254780750|r 743 ATLDGLSIAWATIEYLHETNRCRGLLATHFHELT-DLSK 780 (920)
Q Consensus 743 st~DG~aiA~aile~l~~~~~~~~lfaTHy~eL~-~l~~ 780 (920)
T Consensus 164 D~~~~~~i-~~~l~~l~~~-g~tii~vtHdl~~~~~~~D 200 (222)
T cd03224 164 APKIVEEI-FEAIRELRDE-GVTILLVEQNARFALEIAD 200 (222)
T ss_pred CHHHHHHH-HHHHHHHHHC-CCEEEEECCCHHHHHHHCC
T ss_conf 99999999-9999999956-9999999085899999699