HHsearch alignment for GI: 254780750 and conserved domain: cd03226
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.91 E-value=0.00017 Score=52.04 Aligned_cols=134 Identities=22% Similarity=0.248 Sum_probs=68.9
Q ss_pred EEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCC------------------CCCCHHHCCCCCCCE
Q ss_conf 44434563587777664399996778440789999999999999719------------------853035320682210
Q gi|254780750|r 634 FIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG------------------SYVPASYAHIGIVDK 695 (920)
Q Consensus 634 fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG------------------~fVPA~~a~i~~~D~ 695 (920)
T Consensus 14 ~vL~~vsl~i----~~Gei~~iiG~nGaGKSTLl~~i~Gl~~-p~~G~I~~~g~~~~~~~~~~~ig~v~Q~~-----~~~ 83 (205)
T cd03226 14 EILDDLSLDL----YAGEIIALTGKNGAGKTTLAKILAGLIK-ESSGSILLNGKPIKAKERRKSIGYVMQDV-----DYQ 83 (205)
T ss_pred EEEEEEEEEE----CCCCEEEEECCCCCCHHHHHHHHHCCCC-CCCCEEEECCEECCHHHHHCCEEEEEECC-----CCC
T ss_conf 7864037888----6998999988999989999999956857-77873899999996578744489996278-----644
Q ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHH----------------------------HCCCCCEEEEECCCCCCCHHHH
Q ss_conf 567652376611385328999999999999----------------------------5899856999325889880567
Q gi|254780750|r 696 LFSRVGSADNLASGRSTFMVEMIETASILN----------------------------QATNQSFVILDEIGRGTATLDG 747 (920)
Q Consensus 696 IftRiGa~D~l~~g~STF~vEm~e~~~IL~----------------------------~at~~SLVllDElGrGTst~DG 747 (920)
T Consensus 84 l~~~-tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGqkQrv~iA~aL~~~P~illLDEPt~gLD~~-~ 161 (205)
T cd03226 84 LFTD-SVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYK-N 161 (205)
T ss_pred CCHH-HHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH-H
T ss_conf 2064-7999997048785607999999999769923553891128999999999999997599999997997658999-9
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCHHHH-HHHH
Q ss_conf 99999999999972698499974875797-6643
Q gi|254780750|r 748 LSIAWATIEYLHETNRCRGLLATHFHELT-DLSK 780 (920)
Q Consensus 748 ~aiA~aile~l~~~~~~~~lfaTHy~eL~-~l~~ 780 (920)
T Consensus 162 ~~~i~~ll~~l~~~-g~tvi~itHdl~~~~~~~d 194 (205)
T cd03226 162 MERVGELIRELAAQ-GKAVIVITHDYEFLAKVCD 194 (205)
T ss_pred HHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHCC
T ss_conf 99999999999979-9999998039899999799