HHsearch alignment for GI: 254780750 and conserved domain: cd03233
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.24 E-value=2.8e-05 Score=57.91 Aligned_cols=130 Identities=20% Similarity=0.237 Sum_probs=66.4
Q ss_pred EEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH-----------------------HHHHCCCCCCHHHCCC-
Q ss_conf 4434563587777664399996778440789999999999-----------------------9997198530353206-
Q gi|254780750|r 635 IANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV-----------------------IMAQMGSYVPASYAHI- 690 (920)
Q Consensus 635 VpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~v-----------------------ilAQiG~fVPA~~a~i- 690 (920)
T Consensus 22 vL~~is~~i----~~Gei~~llG~nGsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~v~q~~~~~~ 96 (202)
T cd03233 22 ILKDFSGVV----KPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEII-YVSEEDVHFP 96 (202)
T ss_pred EEECEEEEE----CCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCEECCHHHHHHHCCEE-EECCCCCCCC
T ss_conf 997708898----09849999989999889999998378789875137999999994051486420199-9867322376
Q ss_pred --CCCCEE-EE-EEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf --822105-67-65237661138532899999999999958998569993258898805679999999999997269849
Q gi|254780750|r 691 --GIVDKL-FS-RVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRG 766 (920)
Q Consensus 691 --~~~D~I-ft-RiGa~D~l~~g~STF~vEm~e~~~IL~~at~~SLVllDElGrGTst~DG~aiA~aile~l~~~~~~~~ 766 (920)
T Consensus 97 ~ltv~e~l~~~~~~-~~~~~~~~LSgGqkqRv~iA~a--L~~~P~illlDEPt~gLD~~~~~~i-~~~l~~l~~~~~~t~ 172 (202)
T cd03233 97 TLTVRETLDFALRC-KGNEFVRGISGGERKRVSIAEA--LVSRASVLCWDNSTRGLDSSTALEI-LKCIRTMADVLKTTT 172 (202)
T ss_pred CCCHHHHHHHHHHH-CCCCCCCCCCHHHHHHHHHHHH--HHHCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHHHCCCEE
T ss_conf 88099999999984-6587444589999999999999--9529988998387656899999999-999999998779989
Q ss_pred EEECCCH
Q ss_conf 9974875
Q gi|254780750|r 767 LLATHFH 773 (920)
Q Consensus 767 lfaTHy~ 773 (920)
T Consensus 173 ii~~~~~ 179 (202)
T cd03233 173 FVSLYQA 179 (202)
T ss_pred EEEEECC
T ss_conf 9999069