HHsearch alignment for GI: 254780750 and conserved domain: cd03239
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=97.81 E-value=0.00019 Score=51.66 Aligned_cols=129 Identities=22% Similarity=0.291 Sum_probs=67.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHH-----------HHHHCCCCC--CHHHCCCCC--CCEEE-EEEECCCC-CCCCCCHH
Q ss_conf 399996778440789999999999-----------999719853--035320682--21056-76523766-11385328
Q gi|254780750|r 651 KLWLLTGPNMGGKSTFLRQNALIV-----------IMAQMGSYV--PASYAHIGI--VDKLF-SRVGSADN-LASGRSTF 713 (920)
Q Consensus 651 ~~~iiTGpNmgGKSt~lRqval~v-----------ilAQiG~fV--PA~~a~i~~--~D~If-tRiGa~D~-l~~g~STF 713 (920)
T Consensus 23 ~~~~ivG~nGsGKSni~~ai~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~a~v~~~~~~~~~~v~qg~~~~lLSGGEks- 101 (178)
T cd03239 23 SFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQGKVEQILSGGEKS- 101 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHCCCCCHHH-
T ss_conf 8179989998877899999999986642765200135432443556744236799998754044124410016752589-
Q ss_pred HHHHHHHHHHH--HHCCCCCEEEEECCCCCCCHHHHHHH--HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCEEE
Q ss_conf 99999999999--95899856999325889880567999--9999999997269849997487579766430688589
Q gi|254780750|r 714 MVEMIETASIL--NQATNQSFVILDEIGRGTATLDGLSI--AWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 (920)
Q Consensus 714 ~vEm~e~~~IL--~~at~~SLVllDElGrGTst~DG~ai--A~aile~l~~~~~~~~lfaTHy~eL~~l~~~~~~v~n 787 (920)
T Consensus 102 ---l~alal~~ai~~~~p~p~~iLDEv---dAaLD~~N~~r~~~~i~el~~~-~sQfIiITH~~~~m~~ad~l~gVtm 172 (178)
T cd03239 102 ---LSALALIFALQEIKPSPFYVLDEI---DAALDPTNRRRVSDMIKEMAKH-TSQFIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred ---HHHHHHHHHHHCCCCCCEEEEECC---CCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCHHHHHHCCEEEEEEE
T ss_conf ---999999999971389966998276---5547988999999999999738-9989999868999974785899980