HHsearch alignment for GI: 254780750 and conserved domain: cd03241

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.86  E-value=0.52  Score=26.00  Aligned_cols=92  Identities=15%  Similarity=0.202  Sum_probs=52.9

Q ss_pred             HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHCCCEEEEEEEEEEECC
Q ss_conf             99999995899856999325889880567999999999999726-98499974875797664306885899999996099
Q gi|254780750|r  719 ETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETN-RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE  797 (920)
Q Consensus       719 e~~~IL~~at~~SLVllDElGrGTst~DG~aiA~aile~l~~~~-~~~~lfaTHy~eL~~l~~~~~~v~n~~~~~~~~~~  797 (920)
T Consensus       182 Alk~~~~~~~~~~tliFDEID~GigG----~~A~~vg~~l~~ls~~~QVi~ITHlpQvAa~ad~H-----~~V~K~~~~~  252 (276)
T cd03241         182 ALKAILARKDAVPTLIFDEIDTGISG----EVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNH-----FLVEKEVEGG  252 (276)
T ss_pred             HHHHHHCCCCCCCEEEEECCCCCCCH----HHHHHHHHHHHHHHCCCEEEEEECHHHHHHCCCCE-----EEEEEEECCC
T ss_conf             99999627889985798445789898----99999999999984798799981779988413767-----9999980499


Q ss_pred             -EEEEEEEEEECCCCCCHHHHHHHHCC
Q ss_conf             -27787777447898877899999829
Q gi|254780750|r  798 -GIIFLHKVIPGIADHSYGIQVGKLAG  823 (920)
Q Consensus       798 -~i~flykl~~G~~~~Sygi~vA~laG  823 (920)
T Consensus       253 ~t~t~i~~L----~~~eRv~EiARMl~  275 (276)
T cd03241         253 RTVTKVREL----DKEERVEEIARMLS  275 (276)
T ss_pred             EEEEEEEEC----CHHHHHHHHHHHHC
T ss_conf             289999999----86089999999728