HHsearch alignment for GI: 254780750 and conserved domain: cd03241
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.86 E-value=0.52 Score=26.00 Aligned_cols=92 Identities=15% Similarity=0.202 Sum_probs=52.9
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHCCCEEEEEEEEEEECC
Q ss_conf 99999995899856999325889880567999999999999726-98499974875797664306885899999996099
Q gi|254780750|r 719 ETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETN-RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 (920)
Q Consensus 719 e~~~IL~~at~~SLVllDElGrGTst~DG~aiA~aile~l~~~~-~~~~lfaTHy~eL~~l~~~~~~v~n~~~~~~~~~~ 797 (920)
T Consensus 182 Alk~~~~~~~~~~tliFDEID~GigG----~~A~~vg~~l~~ls~~~QVi~ITHlpQvAa~ad~H-----~~V~K~~~~~ 252 (276)
T cd03241 182 ALKAILARKDAVPTLIFDEIDTGISG----EVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNH-----FLVEKEVEGG 252 (276)
T ss_pred HHHHHHCCCCCCCEEEEECCCCCCCH----HHHHHHHHHHHHHHCCCEEEEEECHHHHHHCCCCE-----EEEEEEECCC
T ss_conf 99999627889985798445789898----99999999999984798799981779988413767-----9999980499
Q ss_pred -EEEEEEEEEECCCCCCHHHHHHHHCC
Q ss_conf -27787777447898877899999829
Q gi|254780750|r 798 -GIIFLHKVIPGIADHSYGIQVGKLAG 823 (920)
Q Consensus 798 -~i~flykl~~G~~~~Sygi~vA~laG 823 (920)
T Consensus 253 ~t~t~i~~L----~~~eRv~EiARMl~ 275 (276)
T cd03241 253 RTVTKVREL----DKEERVEEIARMLS 275 (276)
T ss_pred EEEEEEEEC----CHHHHHHHHHHHHC
T ss_conf 289999999----86089999999728