HHsearch alignment for GI: 254780750 and conserved domain: cd03247
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.65 E-value=0.0011 Score=45.95 Aligned_cols=126 Identities=21% Similarity=0.158 Sum_probs=67.1
Q ss_pred EEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHCCCCCC
Q ss_conf 44434563587777664399996778440789999999999999719--------------------8530353206822
Q gi|254780750|r 634 FIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG--------------------SYVPASYAHIGIV 693 (920)
Q Consensus 634 fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG--------------------~fVPA~~a~i~~~ 693 (920)
T Consensus 16 ~~L~~i~l~i----~~Ge~~aivG~sGsGKSTLl~~l~G~~-~p~~G~i~i~g~~i~~~~~~~~~~i~~v~Q~~------ 84 (178)
T cd03247 16 QVLKNLSLEL----KQGEKIALLGRSGSGKSTLLQLLTGDL-KPQQGEITLDGVPVSDLEKALSSLISVLNQRP------ 84 (178)
T ss_pred CCEECEEEEE----CCCCEEEEECCCCCHHHHHHHHHHHCC-CCCCCEEEECCEEHHHHHHHHHHHEEEECCCC------
T ss_conf 6332558998----699999999999875999999998617-66788699999988997899997208983556------
Q ss_pred CEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCH
Q ss_conf 10567652376611385328999999999999589985699932588988056799999999999972698499974875
Q gi|254780750|r 694 DKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFH 773 (920)
Q Consensus 694 D~IftRiGa~D~l~~g~STF~vEm~e~~~IL~~at~~SLVllDElGrGTst~DG~aiA~aile~l~~~~~~~~lfaTHy~ 773 (920)
T Consensus 85 -~lf~~-ti~~nlg~~LSgGqkqRv~iAral--~~~p~ililDEpts~LD~~t~~~i~~~l~-~~~-~-~~Tvi~itH~~ 157 (178)
T cd03247 85 -YLFDT-TLRNNLGRRFSGGERQRLALARIL--LQDAPIVLLDEPTVGLDPITERQLLSLIF-EVL-K-DKTLIWITHHL 157 (178)
T ss_pred -CCCCC-HHHHHCCCCCCHHHHHHHHHHHHH--HHCCCEEEECCCCCCCCHHHHHHHHHHHH-HHC-C-CCEEEEEECCH
T ss_conf -36454-199862888899999999999999--64979767228655699899999999999-983-9-99999980589
Q ss_pred HHHH
Q ss_conf 7976
Q gi|254780750|r 774 ELTD 777 (920)
Q Consensus 774 eL~~ 777 (920)
T Consensus 158 ~~l~ 161 (178)
T cd03247 158 TGIE 161 (178)
T ss_pred HHHH
T ss_conf 8998