>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

Probab=97.57  E-value=0.0019  Score=44.24  Aligned_cols=53  Identities=21%  Similarity=0.142  Sum_probs=36.6

Q ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH-HHH
Q ss_conf             899856999325889880567999999999999726984999748757976-643
Q gi|254780750|r  727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTD-LSK  780 (920)
Q Consensus       727 at~~SLVllDElGrGTst~DG~aiA~aile~l~~~~~~~~lfaTHy~eL~~-l~~  780 (920)
T Consensus       161 ~~~P~iLllDEPTs~LD~~~~~~i-~~~l~~l~~~~~~tii~vtHd~~~~~~~aD  214 (228)
T cd03257         161 ALNPKLLIADEPTSALDVSVQAQI-LDLLKKLQEELGLTLLFITHDLGVVAKIAD  214 (228)
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHHHCCCEEEEECCCHHHHHHHCC
T ss_conf             479999999488764799999999-999999998509899998689999999699