HHsearch alignment for GI: 254780750 and conserved domain: cd03262
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.00 E-value=0.014 Score=37.71 Aligned_cols=138 Identities=23% Similarity=0.294 Sum_probs=70.1
Q ss_pred EEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH-----CCCCCCHHHC-------CCCCC---CEEEEE
Q ss_conf 44345635877776643999967784407899999999999997-----1985303532-------06822---105676
Q gi|254780750|r 635 IANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ-----MGSYVPASYA-------HIGIV---DKLFSR 699 (920)
Q Consensus 635 VpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQ-----iG~fVPA~~a-------~i~~~---D~IftR 699 (920)
T Consensus 15 vL~~vsl~i----~~Ge~~~ivGpSGsGKSTLL~~i~gL~~p~~G~i~i~g~~i~~~~~~~~~~rr~iG~VFQ~~~L~p~ 90 (213)
T cd03262 15 VLKGIDLTV----KKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPH 90 (213)
T ss_pred EECCEEEEE----CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHHHHHCCCEEEECCCCCCCC
T ss_conf 886707598----8998999999998449999999981999986499999999999815699986782799679875899
Q ss_pred EECCCCCCC------CCCHHHHHHHHHH----------------------------HHHH-HCCCCCEEEEECCCCCCCH
Q ss_conf 523766113------8532899999999----------------------------9999-5899856999325889880
Q gi|254780750|r 700 VGSADNLAS------GRSTFMVEMIETA----------------------------SILN-QATNQSFVILDEIGRGTAT 744 (920)
Q Consensus 700 iGa~D~l~~------g~STF~vEm~e~~----------------------------~IL~-~at~~SLVllDElGrGTst 744 (920)
T Consensus 91 ltv~eNV~~~l~~~~~~~~--~e~~~~a~~~L~~vgL~~~~~~~P~~LSGGqqQRVAIARALa~~P~ilL~DEPts~LD~ 168 (213)
T cd03262 91 LTVLENITLAPIKVKGMSK--AEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDP 168 (213)
T ss_pred CCHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHCCCHHHHCCCHHHCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCH
T ss_conf 9199999999999769999--99999999999868997887499444692999999999996379999997088887798
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH-HHHH
Q ss_conf 56799999999999972698499974875797-6643
Q gi|254780750|r 745 LDGLSIAWATIEYLHETNRCRGLLATHFHELT-DLSK 780 (920)
Q Consensus 745 ~DG~aiA~aile~l~~~~~~~~lfaTHy~eL~-~l~~ 780 (920)
T Consensus 169 ~~~~~i-~~ll~~l~~~-g~T~i~VTHD~~~a~~~aD 203 (213)
T cd03262 169 ELVGEV-LDVMKDLAEE-GMTMVVVTHEMGFAREVAD 203 (213)
T ss_pred HHHHHH-HHHHHHHHHC-CCEEEEECCCHHHHHHHCC
T ss_conf 999999-9999999862-9999999989999999689