HHsearch alignment for GI: 254780750 and conserved domain: cd03263

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.92  E-value=0.00013  Score=52.95  Aligned_cols=130  Identities=23%  Similarity=0.292  Sum_probs=68.5

Q ss_pred             EEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH--------------------HHHHCCCCCCHHHCCCCCCC
Q ss_conf             4434563587777664399996778440789999999999--------------------99971985303532068221
Q gi|254780750|r  635 IANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV--------------------IMAQMGSYVPASYAHIGIVD  694 (920)
Q Consensus       635 VpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~v--------------------ilAQiG~fVPA~~a~i~~~D  694 (920)
T Consensus        17 aL~~is~~i----~~Gei~~llG~NGaGKSTLl~~i~Gl~~p~~G~I~i~G~~i~~~~~~~~~~ig-~v~q~~-------   84 (220)
T cd03263          17 AVDDLSLNV----YKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLG-YCPQFD-------   84 (220)
T ss_pred             EEECCEEEE----CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEECCCCHHHHHCCEE-EEECCC-------
T ss_conf             984408898----49959999989997399999999669878899779999977658898860569-992356-------


Q ss_pred             EEEEEEECCCCCC-----CCCCH-----------------------------HHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf             0567652376611-----38532-----------------------------8999999999999589985699932588
Q gi|254780750|r  695 KLFSRVGSADNLA-----SGRST-----------------------------FMVEMIETASILNQATNQSFVILDEIGR  740 (920)
Q Consensus       695 ~IftRiGa~D~l~-----~g~ST-----------------------------F~vEm~e~~~IL~~at~~SLVllDElGr  740 (920)
T Consensus        85 ~l~~~ltv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia--~al~~~P~lliLDEPt~  162 (220)
T cd03263          85 ALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLA--IALIGGPSVLLLDEPTS  162 (220)
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHH--HHHHCCCCEEEEECCCC
T ss_conf             5687887999999989756999899999999999876967775075767899999999999--99956999999958876


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH-HHHHH
Q ss_conf             988056799999999999972698499974875797-66430
Q gi|254780750|r  741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELT-DLSKS  781 (920)
Q Consensus       741 GTst~DG~aiA~aile~l~~~~~~~~lfaTHy~eL~-~l~~~  781 (920)
T Consensus       163 gLD~~~~~-~i~~~l~~~~-~-~~tii~~tH~l~e~~~l~dr  201 (220)
T cd03263         163 GLDPASRR-AIWDLILEVR-K-GRSIILTTHSMDEAEALCDR  201 (220)
T ss_pred             CCCHHHHH-HHHHHHHHHH-C-CCEEEEECCCHHHHHHHCCE
T ss_conf             88999999-9999999984-8-99899996878999996999