HHsearch alignment for GI: 254780750 and conserved domain: cd03263
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.92 E-value=0.00013 Score=52.95 Aligned_cols=130 Identities=23% Similarity=0.292 Sum_probs=68.5
Q ss_pred EEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH--------------------HHHHCCCCCCHHHCCCCCCC
Q ss_conf 4434563587777664399996778440789999999999--------------------99971985303532068221
Q gi|254780750|r 635 IANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV--------------------IMAQMGSYVPASYAHIGIVD 694 (920)
Q Consensus 635 VpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~v--------------------ilAQiG~fVPA~~a~i~~~D 694 (920)
T Consensus 17 aL~~is~~i----~~Gei~~llG~NGaGKSTLl~~i~Gl~~p~~G~I~i~G~~i~~~~~~~~~~ig-~v~q~~------- 84 (220)
T cd03263 17 AVDDLSLNV----YKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLG-YCPQFD------- 84 (220)
T ss_pred EEECCEEEE----CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEECCCCHHHHHCCEE-EEECCC-------
T ss_conf 984408898----49959999989997399999999669878899779999977658898860569-992356-------
Q ss_pred EEEEEEECCCCCC-----CCCCH-----------------------------HHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 0567652376611-----38532-----------------------------8999999999999589985699932588
Q gi|254780750|r 695 KLFSRVGSADNLA-----SGRST-----------------------------FMVEMIETASILNQATNQSFVILDEIGR 740 (920)
Q Consensus 695 ~IftRiGa~D~l~-----~g~ST-----------------------------F~vEm~e~~~IL~~at~~SLVllDElGr 740 (920)
T Consensus 85 ~l~~~ltv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia--~al~~~P~lliLDEPt~ 162 (220)
T cd03263 85 ALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLA--IALIGGPSVLLLDEPTS 162 (220)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHH--HHHHCCCCEEEEECCCC
T ss_conf 5687887999999989756999899999999999876967775075767899999999999--99956999999958876
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH-HHHHH
Q ss_conf 988056799999999999972698499974875797-66430
Q gi|254780750|r 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELT-DLSKS 781 (920)
Q Consensus 741 GTst~DG~aiA~aile~l~~~~~~~~lfaTHy~eL~-~l~~~ 781 (920)
T Consensus 163 gLD~~~~~-~i~~~l~~~~-~-~~tii~~tH~l~e~~~l~dr 201 (220)
T cd03263 163 GLDPASRR-AIWDLILEVR-K-GRSIILTTHSMDEAEALCDR 201 (220)
T ss_pred CCCHHHHH-HHHHHHHHHH-C-CCEEEEECCCHHHHHHHCCE
T ss_conf 88999999-9999999984-8-99899996878999996999