HHsearch alignment for GI: 254780750 and conserved domain: cd03266
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.63 E-value=0.0015 Score=45.04 Aligned_cols=131 Identities=24% Similarity=0.313 Sum_probs=69.1
Q ss_pred EEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCC------------------CCCC---
Q ss_conf 4434563587777664399996778440789999999999999719853035320------------------6822---
Q gi|254780750|r 635 IANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAH------------------IGIV--- 693 (920)
Q Consensus 635 VpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a~------------------i~~~--- 693 (920)
T Consensus 20 al~~vs~~i----~~Gei~gllG~NGaGKSTllk~i~--------Gl~~p-~~G~i~i~G~d~~~~~~~~r~~ig~~~q~ 86 (218)
T cd03266 20 AVDGVSFTV----KPGEVTGLLGPNGAGKTTTLRMLA--------GLLEP-DAGFATVDGFDVVKEPAEARRRLGFVSDS 86 (218)
T ss_pred EEECCEEEE----CCCCEEEEECCCCCCHHHHHHHHH--------CCCCC-CCCEEEECCEECCCCHHHHHCCEEEECCC
T ss_conf 872627898----598299999999984999999997--------79778-97489999999886979896287998077
Q ss_pred CEEEEEEECCCCCC-----CCCC--------HHHHHHHHH-------------------HHHHHHCCCCCEEEEECCCCC
Q ss_conf 10567652376611-----3853--------289999999-------------------999995899856999325889
Q gi|254780750|r 694 DKLFSRVGSADNLA-----SGRS--------TFMVEMIET-------------------ASILNQATNQSFVILDEIGRG 741 (920)
Q Consensus 694 D~IftRiGa~D~l~-----~g~S--------TF~vEm~e~-------------------~~IL~~at~~SLVllDElGrG 741 (920)
T Consensus 87 ~~l~~~ltv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~kqrv~la~al~~~P~lliLDEPt~g 166 (218)
T cd03266 87 TGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTG 166 (218)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 66799998999999999984999899999999999974995575144322782688999999998669989999798767
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH-HHHH
Q ss_conf 88056799999999999972698499974875797-6643
Q gi|254780750|r 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELT-DLSK 780 (920)
Q Consensus 742 Tst~DG~aiA~aile~l~~~~~~~~lfaTHy~eL~-~l~~ 780 (920)
T Consensus 167 LD~~-~~~~i~~~l~~l~~~-g~til~~sH~l~e~~~l~d 204 (218)
T cd03266 167 LDVM-ATRALREFIRQLRAL-GKCILFSTHIMQEVERLCD 204 (218)
T ss_pred CCHH-HHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHCC
T ss_conf 6999-999999999999857-9999998987899999699