HHsearch alignment for GI: 254780750 and conserved domain: cd03267
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.10 E-value=4.3e-05 Score=56.49 Aligned_cols=140 Identities=16% Similarity=0.248 Sum_probs=72.6
Q ss_pred CCCEEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH--------------------HHHHCCCCCCHHH---
Q ss_conf 77044434563587777664399996778440789999999999--------------------9997198530353---
Q gi|254780750|r 631 SKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV--------------------IMAQMGSYVPASY--- 687 (920)
Q Consensus 631 ~~~fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~v--------------------ilAQiG~fVPA~~--- 687 (920)
T Consensus 32 g~~~al~~vsf~i----~~Gei~gLlGpNGaGKSTllk~l~Gl~~p~~G~I~v~G~~~~~~~~~~~~~ig~v~~q~~~l~ 107 (236)
T cd03267 32 REVEALKGISFTI----EKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLW 107 (236)
T ss_pred CCEEEECCCEEEE----CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHHHHEEEEECCCCCCC
T ss_conf 9989866805788----489599999999830999999996494887159999999851040988843799957754246
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCH--H------HHHHHHHHH-------------------HHHHCCCCCEEEEECCCC
Q ss_conf 2068221056765237661138532--8------999999999-------------------999589985699932588
Q gi|254780750|r 688 AHIGIVDKLFSRVGSADNLASGRST--F------MVEMIETAS-------------------ILNQATNQSFVILDEIGR 740 (920)
Q Consensus 688 a~i~~~D~IftRiGa~D~l~~g~ST--F------~vEm~e~~~-------------------IL~~at~~SLVllDElGr 740 (920)
T Consensus 108 ~~ltv~e~l~--~~~~---~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~rqrv~ia~aL~~~P~lllLDEPt~ 182 (236)
T cd03267 108 WDLPVIDSFY--LLAA---IYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTI 182 (236)
T ss_pred CCCCHHHHHH--HHHH---HHCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 7993999999--9999---8573899999999999997486877549345699999999999999967999999979876
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH-HHHH
Q ss_conf 988056799999999999972698499974875797-6643
Q gi|254780750|r 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELT-DLSK 780 (920)
Q Consensus 741 GTst~DG~aiA~aile~l~~~~~~~~lfaTHy~eL~-~l~~ 780 (920)
T Consensus 183 gLD~~~~~~i-~~~l~~l~~~~g~till~tH~l~ev~~~~D 222 (236)
T cd03267 183 GLDVVAQENI-RNFLKEYNRERGTTVLLTSHYMKDIEALAR 222 (236)
T ss_pred CCCHHHHHHH-HHHHHHHHHHCCCEEEEECCCHHHHHHHCC
T ss_conf 8899999999-999999997389899998887899999799