HHsearch alignment for GI: 254780750 and conserved domain: cd03267

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.10  E-value=4.3e-05  Score=56.49  Aligned_cols=140  Identities=16%  Similarity=0.248  Sum_probs=72.6

Q ss_pred             CCCEEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH--------------------HHHHCCCCCCHHH---
Q ss_conf             77044434563587777664399996778440789999999999--------------------9997198530353---
Q gi|254780750|r  631 SKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV--------------------IMAQMGSYVPASY---  687 (920)
Q Consensus       631 ~~~fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~v--------------------ilAQiG~fVPA~~---  687 (920)
T Consensus        32 g~~~al~~vsf~i----~~Gei~gLlGpNGaGKSTllk~l~Gl~~p~~G~I~v~G~~~~~~~~~~~~~ig~v~~q~~~l~  107 (236)
T cd03267          32 REVEALKGISFTI----EKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLW  107 (236)
T ss_pred             CCEEEECCCEEEE----CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHHHHEEEEECCCCCCC
T ss_conf             9989866805788----489599999999830999999996494887159999999851040988843799957754246


Q ss_pred             CCCCCCCEEEEEEECCCCCCCCCCH--H------HHHHHHHHH-------------------HHHHCCCCCEEEEECCCC
Q ss_conf             2068221056765237661138532--8------999999999-------------------999589985699932588
Q gi|254780750|r  688 AHIGIVDKLFSRVGSADNLASGRST--F------MVEMIETAS-------------------ILNQATNQSFVILDEIGR  740 (920)
Q Consensus       688 a~i~~~D~IftRiGa~D~l~~g~ST--F------~vEm~e~~~-------------------IL~~at~~SLVllDElGr  740 (920)
T Consensus       108 ~~ltv~e~l~--~~~~---~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~rqrv~ia~aL~~~P~lllLDEPt~  182 (236)
T cd03267         108 WDLPVIDSFY--LLAA---IYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTI  182 (236)
T ss_pred             CCCCHHHHHH--HHHH---HHCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             7993999999--9999---8573899999999999997486877549345699999999999999967999999979876


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH-HHHH
Q ss_conf             988056799999999999972698499974875797-6643
Q gi|254780750|r  741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELT-DLSK  780 (920)
Q Consensus       741 GTst~DG~aiA~aile~l~~~~~~~~lfaTHy~eL~-~l~~  780 (920)
T Consensus       183 gLD~~~~~~i-~~~l~~l~~~~g~till~tH~l~ev~~~~D  222 (236)
T cd03267         183 GLDVVAQENI-RNFLKEYNRERGTTVLLTSHYMKDIEALAR  222 (236)
T ss_pred             CCCHHHHHHH-HHHHHHHHHHCCCEEEEECCCHHHHHHHCC
T ss_conf             8899999999-999999997389899998887899999799