>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Probab=97.97 E-value=0.00027 Score=50.53 Aligned_cols=133 Identities=23% Similarity=0.337 Sum_probs=71.4 Q ss_pred EEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH-----------------HHHCCCCCCHHHC---CCCCC Q ss_conf 444345635877776643999967784407899999999999-----------------9971985303532---06822 Q gi|254780750|r 634 FIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI-----------------MAQMGSYVPASYA---HIGIV 693 (920) Q Consensus 634 fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vi-----------------lAQiG~fVPA~~a---~i~~~ 693 (920) T Consensus 14 ~al~~vs~~v----~~Gei~gllG~NGaGKTTll~~i~Gl~~p~~G~i~i~G~~~~~~~~~~ig-~~pq~~~l~~~ltv~ 88 (210) T cd03269 14 TALDDISFSV----EKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIG-YLPEERGLYPKMKVI 88 (210) T ss_pred EEECCEEEEE----CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHCCEE-EECCCCCCCCCCCHH T ss_conf 9975426788----79959999989998499999999600266899899999868844360199-964766679999999 Q ss_pred CEE--EEEE-------------------ECCC---CCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHH Q ss_conf 105--6765-------------------2376---611385328999999999999589985699932588988056799 Q gi|254780750|r 694 DKL--FSRV-------------------GSAD---NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLS 749 (920) Q Consensus 694 D~I--ftRi-------------------Ga~D---~l~~g~STF~vEm~e~~~IL~~at~~SLVllDElGrGTst~DG~a 749 (920) T Consensus 89 e~l~~~~~l~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrv~la--~al~~~p~lllLDEPt~gLDp~~-~~ 165 (210) T cd03269 89 DQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFI--AAVIHDPELLILDEPFSGLDPVN-VE 165 (210) T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHCCHHHHHHHHHH--HHHHCCCCEEEEECCCCCCCHHH-HH T ss_conf 9999999974999999999999999986997054880577899899999999--99957998999928866799999-99 Q ss_pred HHHHHHHHHHHHCCCEEEEECCCHHH Q ss_conf 99999999997269849997487579 Q gi|254780750|r 750 IAWATIEYLHETNRCRGLLATHFHEL 775 (920) Q Consensus 750 iA~aile~l~~~~~~~~lfaTHy~eL 775 (920) T Consensus 166 ~i~~~i~~~~~~-g~til~ssH~l~e 190 (210) T cd03269 166 LLKDVIRELARA-GKTVILSTHQMEL 190 (210) T ss_pred HHHHHHHHHHHC-CCEEEEECCCHHH T ss_conf 999999999968-9899998884899

HHsearch alignment for GI: 254780750 and conserved domain: cd03269