HHsearch alignment for GI: 254780750 and conserved domain: cd03279

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

Probab=94.74  E-value=0.052  Score=33.45  Aligned_cols=35  Identities=29%  Similarity=0.445  Sum_probs=24.9

Q ss_pred             EEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             34563587777664399996778440789999999999
Q gi|254780750|r  637 NDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV  674 (920)
Q Consensus       637 Ndi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~v  674 (920)
T Consensus        18 ~~IDF~~---~~~~~lflI~G~nGsGKSTIlDAI~~aL   52 (213)
T cd03279          18 QVIDFTG---LDNNGLFLICGPTGAGKSTILDAITYAL   52 (213)
T ss_pred             EEEECCC---CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             1784876---7878889998899997889999999998