HHsearch alignment for GI: 254780750 and conserved domain: cd03285
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=0 Score=563.04 Aligned_cols=220 Identities=45% Similarity=0.754 Sum_probs=207.4
Q ss_pred EECCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCC
Q ss_conf 00004680588763102877044434563587777664399996778440789999999999999719853035320682
Q gi|254780750|r 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGI 692 (920)
Q Consensus 613 ~i~~gRHPviE~~l~~~~~~~fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a~i~~ 692 (920)
T Consensus 1 ~ik~~RHPlle~~----~~~~~VpNdi~l~~----~~~~i~iiTGpN~sGKSt~lk~i~l~~~laq~G~~vpa~~~~~~~ 72 (222)
T cd03285 1 VLKEARHPCVEAQ----DDVAFIPNDVTLTR----GKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADIPI 72 (222)
T ss_pred CCCCCCCCEEECC----CCCCEECCEEEECC----CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEC
T ss_conf 9667748659706----89977776689768----982599998999887189999999999999868754632389952
Q ss_pred CCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 21056765237661138532899999999999958998569993258898805679999999999997269849997487
Q gi|254780750|r 693 VDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHF 772 (920)
Q Consensus 693 ~D~IftRiGa~D~l~~g~STF~vEm~e~~~IL~~at~~SLVllDElGrGTst~DG~aiA~aile~l~~~~~~~~lfaTHy 772 (920)
T Consensus 73 ~d~i~t~i~~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvliDElg~GT~~~eg~aia~aile~L~~~~~~~~i~tTH~ 152 (222)
T cd03285 73 VDCILARVGASDSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHF 152 (222)
T ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 76499998899710033528999999999999847677320002346898822679999999999985068509998200
Q ss_pred HHHHHHHHHCCCEEEEEEEEE--EECCEEEEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 579766430688589999999--60992778777744789887789999982999899999999999998
Q gi|254780750|r 773 HELTDLSKSLKRFHNATLQVS--DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 (920)
Q Consensus 773 ~eL~~l~~~~~~v~n~~~~~~--~~~~~i~flykl~~G~~~~Sygi~vA~laG~p~~vi~~A~~~~~~le 840 (920)
T Consensus 153 ~~L~~l~~~~~~v~~~~~~~~~~~~~~~l~f~Ykl~~G~~~~s~ai~iA~~~G~p~~ii~rA~~~~~~lE 222 (222)
T cd03285 153 HELTALADEVPNVKNLHVTALTDDASRTLTMLYKVEKGACDQSFGIHVAELANFPKEVIEMAKQKALELE 222 (222)
T ss_pred HHHHHHHHCCCCCEEEEEEEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 7799986408551357899999605992789999676899984999999992959999999999999629