HHsearch alignment for GI: 254780750 and conserved domain: cd03293
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.69 E-value=0.00014 Score=52.61 Aligned_cols=130 Identities=25% Similarity=0.243 Sum_probs=66.2
Q ss_pred EEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCE-----------------EE
Q ss_conf 4434563587777664399996778440789999999999999719853035320682210-----------------56
Q gi|254780750|r 635 IANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDK-----------------LF 697 (920)
Q Consensus 635 VpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a~i~~~D~-----------------If 697 (920)
T Consensus 19 al~~vsl~i----~~Ge~~~iiGpsGsGKSTLl~~i~G--------l~~p-~~G~I~~~G~~i~~~~~~ig~vfQ~~~L~ 85 (220)
T cd03293 19 ALEDISLSV----EEGEFVALVGPSGCGKSTLLRIIAG--------LERP-TSGEVLVDGEPVTGPGPDRGYVFQQDALL 85 (220)
T ss_pred EEECEEEEE----CCCCEEEEECCCCCHHHHHHHHHHC--------CCCC-CCCEEEECCEECCCCCCCEEEEECCCCCC
T ss_conf 996718898----7998999999999579999999975--------9998-87389999996788898879992488537
Q ss_pred EEEECCCCCCCC-----CCHHHHHHHH-HHHHHH----------------------------HCCCCCEEEEECCCCCCC
Q ss_conf 765237661138-----5328999999-999999----------------------------589985699932588988
Q gi|254780750|r 698 SRVGSADNLASG-----RSTFMVEMIE-TASILN----------------------------QATNQSFVILDEIGRGTA 743 (920)
Q Consensus 698 tRiGa~D~l~~g-----~STF~vEm~e-~~~IL~----------------------------~at~~SLVllDElGrGTs 743 (920)
T Consensus 86 p~~tv~eni~~~l~~~~~~~--~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPts~LD 163 (220)
T cd03293 86 PWLTVLDNVALGLELQGVPK--AEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALD 163 (220)
T ss_pred CCCCHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 78879999988998659998--9999999999998789547618931299999999999999866999999808876569
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH-HHHH
Q ss_conf 056799999999999972698499974875797-6643
Q gi|254780750|r 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELT-DLSK 780 (920)
Q Consensus 744 t~DG~aiA~aile~l~~~~~~~~lfaTHy~eL~-~l~~ 780 (920)
T Consensus 164 ~~~~~~-i~~~l~~l~~~~g~tii~vTHdl~~a~~laD 200 (220)
T cd03293 164 ALTREQ-LQEELLDIWRETGKTVLLVTHDIDEAVFLAD 200 (220)
T ss_pred HHHHHH-HHHHHHHHHHHCCCEEEEECCCHHHHHHHCC
T ss_conf 999999-9999999998519999998888999999699