HHsearch alignment for GI: 254780750 and conserved domain: cd03294
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.54 E-value=0.025 Score=35.82 Aligned_cols=138 Identities=21% Similarity=0.267 Sum_probs=69.5
Q ss_pred EEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC------C---CHHH------CCCCCC---CE
Q ss_conf 4443456358777766439999677844078999999999999971985------3---0353------206822---10
Q gi|254780750|r 634 FIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY------V---PASY------AHIGIV---DK 695 (920)
Q Consensus 634 fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~f------V---PA~~------a~i~~~---D~ 695 (920)
T Consensus 38 ~aL~~vsl~i----~~GE~~~ivG~SGsGKSTLLr~i~GL~~-p~~G~I~~~G~~i~~~~~~~l~~~r~~~igmVFQ~~a 112 (269)
T cd03294 38 VGVNDVSLDV----REGEIFVIMGLSGSGKSTLLRCINRLIE-PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA 112 (269)
T ss_pred EEECCCEEEE----CCCCEEEEECCCCCHHHHHHHHHHCCCC-CCCEEEEECCEECCCCCHHHHHHHHCCCEEEEEECCC
T ss_conf 7977747588----8999999998998489999999975999-9975999999999999989998852564699961575
Q ss_pred EEEEEECCCCCCCC-----CCHH-----HHHHHHH---HH------------------HH-HHCCCCCEEEEECCCCCCC
Q ss_conf 56765237661138-----5328-----9999999---99------------------99-9589985699932588988
Q gi|254780750|r 696 LFSRVGSADNLASG-----RSTF-----MVEMIET---AS------------------IL-NQATNQSFVILDEIGRGTA 743 (920)
Q Consensus 696 IftRiGa~D~l~~g-----~STF-----~vEm~e~---~~------------------IL-~~at~~SLVllDElGrGTs 743 (920)
T Consensus 113 L~P~ltV~eNV~~~L~~~~~~~~e~~~rv~e~L~~vgL~~~~~~~P~qLSGGq~QRVaIARALa~~P~iLLlDEP---ts 189 (269)
T cd03294 113 LLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEA---FS 189 (269)
T ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHHCHHHHHHHHHHHHHHCCCCEEEECCC---CC
T ss_conf 476787999986888852899789999999999867986777569678494888899999998639989997587---54
Q ss_pred HHHH---HHHHHHHHHHHHHHCCCEEEEECCCHHHH-HHHH
Q ss_conf 0567---99999999999972698499974875797-6643
Q gi|254780750|r 744 TLDG---LSIAWATIEYLHETNRCRGLLATHFHELT-DLSK 780 (920)
Q Consensus 744 t~DG---~aiA~aile~l~~~~~~~~lfaTHy~eL~-~l~~ 780 (920)
T Consensus 190 aLD~~~~~~i-~~~l~~l~~~~~~T~i~VTHD~~eA~~laD 229 (269)
T cd03294 190 ALDPLIRREM-QDELLRLQAELQKTIVFITHDLDEALRLGD 229 (269)
T ss_pred CCCHHHHHHH-HHHHHHHHHHHCCEEEEECCCHHHHHHHCC
T ss_conf 2599999999-999999999749999999998999999799