HHsearch alignment for GI: 254780750 and conserved domain: cd03296

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.73  E-value=0.0004  Score=49.21  Aligned_cols=132  Identities=23%  Similarity=0.277  Sum_probs=73.4

Q ss_pred             EEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCC--------------------
Q ss_conf             443456358777766439999677844078999999999999971985303532068221--------------------
Q gi|254780750|r  635 IANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVD--------------------  694 (920)
Q Consensus       635 VpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a~i~~~D--------------------  694 (920)
T Consensus        17 ~l~~is~~v----~~Ge~~~iiGpSGsGKSTll~~i~Gl--------~~p-~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~   83 (239)
T cd03296          17 ALDDVSLDI----PSGELVALLGPSGSGKTTLLRLIAGL--------ERP-DSGTILFGGEDATDVPVQERNVGFVFQHY   83 (239)
T ss_pred             EECCCEEEE----CCCCEEEEECCCCCHHHHHHHHHHCC--------CCC-CCEEEEECCEECCCCCHHHCCEEEECCCC
T ss_conf             986638698----89989999999997799999999769--------999-86399999999999996567767981782


Q ss_pred             EEEEEEECCCCCCCCC------C---HH--------HHHHHHHHHHH------------------H-HCCCCCEEEEECC
Q ss_conf             0567652376611385------3---28--------99999999999------------------9-5899856999325
Q gi|254780750|r  695 KLFSRVGSADNLASGR------S---TF--------MVEMIETASIL------------------N-QATNQSFVILDEI  738 (920)
Q Consensus       695 ~IftRiGa~D~l~~g~------S---TF--------~vEm~e~~~IL------------------~-~at~~SLVllDEl  738 (920)
T Consensus        84 ~Lfp~ltV~eNi~~~l~~~~~~~~~~~~e~~~rv~~~l~~v~l~~~~~~~p~eLSGGq~QRVaiARAl~~~P~vlllDEP  163 (239)
T cd03296          84 ALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEP  163 (239)
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf             10679969999987997335456998999999999998654997677489666999898999999987649998997388


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH-HHHH
Q ss_conf             88988056799999999999972698499974875797-6643
Q gi|254780750|r  739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELT-DLSK  780 (920)
Q Consensus       739 GrGTst~DG~aiA~aile~l~~~~~~~~lfaTHy~eL~-~l~~  780 (920)
T Consensus       164 ~s~LD~~~~~~i-~~~l~~l~~e~~~T~i~vTHd~~~a~~laD  205 (239)
T cd03296         164 FGALDAKVRKEL-RRWLRRLHDELHVTTVFVTHDQEEALEVAD  205 (239)
T ss_pred             CCCCCHHHHHHH-HHHHHHHHHHHCCEEEEECCCHHHHHHHCC
T ss_conf             664699999999-999999999859989999889999999699