HHsearch alignment for GI: 254780750 and conserved domain: cd03296
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.73 E-value=0.0004 Score=49.21 Aligned_cols=132 Identities=23% Similarity=0.277 Sum_probs=73.4
Q ss_pred EEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCC--------------------
Q ss_conf 443456358777766439999677844078999999999999971985303532068221--------------------
Q gi|254780750|r 635 IANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVD-------------------- 694 (920)
Q Consensus 635 VpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a~i~~~D-------------------- 694 (920)
T Consensus 17 ~l~~is~~v----~~Ge~~~iiGpSGsGKSTll~~i~Gl--------~~p-~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~ 83 (239)
T cd03296 17 ALDDVSLDI----PSGELVALLGPSGSGKTTLLRLIAGL--------ERP-DSGTILFGGEDATDVPVQERNVGFVFQHY 83 (239)
T ss_pred EECCCEEEE----CCCCEEEEECCCCCHHHHHHHHHHCC--------CCC-CCEEEEECCEECCCCCHHHCCEEEECCCC
T ss_conf 986638698----89989999999997799999999769--------999-86399999999999996567767981782
Q ss_pred EEEEEEECCCCCCCCC------C---HH--------HHHHHHHHHHH------------------H-HCCCCCEEEEECC
Q ss_conf 0567652376611385------3---28--------99999999999------------------9-5899856999325
Q gi|254780750|r 695 KLFSRVGSADNLASGR------S---TF--------MVEMIETASIL------------------N-QATNQSFVILDEI 738 (920)
Q Consensus 695 ~IftRiGa~D~l~~g~------S---TF--------~vEm~e~~~IL------------------~-~at~~SLVllDEl 738 (920)
T Consensus 84 ~Lfp~ltV~eNi~~~l~~~~~~~~~~~~e~~~rv~~~l~~v~l~~~~~~~p~eLSGGq~QRVaiARAl~~~P~vlllDEP 163 (239)
T cd03296 84 ALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEP 163 (239)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 10679969999987997335456998999999999998654997677489666999898999999987649998997388
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH-HHHH
Q ss_conf 88988056799999999999972698499974875797-6643
Q gi|254780750|r 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELT-DLSK 780 (920)
Q Consensus 739 GrGTst~DG~aiA~aile~l~~~~~~~~lfaTHy~eL~-~l~~ 780 (920)
T Consensus 164 ~s~LD~~~~~~i-~~~l~~l~~e~~~T~i~vTHd~~~a~~laD 205 (239)
T cd03296 164 FGALDAKVRKEL-RRWLRRLHDELHVTTVFVTHDQEEALEVAD 205 (239)
T ss_pred CCCCCHHHHHHH-HHHHHHHHHHHCCEEEEECCCHHHHHHHCC
T ss_conf 664699999999-999999999859989999889999999699