>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Probab=97.58 E-value=0.0034 Score=42.30 Aligned_cols=129 Identities=23% Similarity=0.324 Sum_probs=67.0 Q ss_pred EEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCC-----------------CCC---CEEE Q ss_conf 45635877776643999967784407899999999999997198530353206-----------------822---1056 Q gi|254780750|r 638 DCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHI-----------------GIV---DKLF 697 (920) Q Consensus 638 di~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a~i-----------------~~~---D~If 697 (920) T Consensus 16 ~i~l~i----~~Ge~~~ilGpSGsGKSTLl~li~--------Gl~~p~-sG~I~i~G~di~~~~~~~r~ig~vfQ~~~L~ 82 (211) T cd03298 16 HFDLTF----AQGEITAIVGPSGSGKSTLLNLIA--------GFETPQ-SGRVLINGVDVTAAPPADRPVSMLFQENNLF 82 (211) T ss_pred EEEEEE----CCCCEEEEECCCCCHHHHHHHHHH--------CCCCCC-CEEEEECCEECCCCCHHHCCEEEEECCCCCC T ss_conf 278898----899899999999955999999997--------699988-5299999999999998898679995388668 Q ss_pred EEEECCCCCCCCCCH---HHHH-------HHH---HHHHH------------------H-HCCCCCEEEEECCCCCCCHH Q ss_conf 765237661138532---8999-------999---99999------------------9-58998569993258898805 Q gi|254780750|r 698 SRVGSADNLASGRST---FMVE-------MIE---TASIL------------------N-QATNQSFVILDEIGRGTATL 745 (920) Q Consensus 698 tRiGa~D~l~~g~ST---F~vE-------m~e---~~~IL------------------~-~at~~SLVllDElGrGTst~ 745 (920) T Consensus 83 p~ltV~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~p~~LSGGqkQRvaiARAL~~~P~ilLlDEPts~LD~~ 162 (211) T cd03298 83 AHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPA 162 (211) T ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHH T ss_conf 99949999875886468882999999999998769987872894558989999999999986599999971887655989 Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH-HHH Q ss_conf 67999999999999726984999748757976-643 Q gi|254780750|r 746 DGLSIAWATIEYLHETNRCRGLLATHFHELTD-LSK 780 (920) Q Consensus 746 DG~aiA~aile~l~~~~~~~~lfaTHy~eL~~-l~~ 780 (920) T Consensus 163 ~~~~-l~~~l~~l~~~~~~Tvi~vTHd~~ea~~~ad 197 (211) T cd03298 163 LRAE-MLDLVLDLHAETKMTVLMVTHQPEDAKRLAQ 197 (211) T ss_pred HHHH-HHHHHHHHHHHHCCEEEEECCCHHHHHHHCC T ss_conf 9999-9999999999749989999889999999699

HHsearch alignment for GI: 254780750 and conserved domain: cd03298