HHsearch alignment for GI: 254780750 and conserved domain: cd03301
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.73 E-value=0.0004 Score=49.23 Aligned_cols=134 Identities=21% Similarity=0.255 Sum_probs=71.5
Q ss_pred EEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCC----------CCCC---------
Q ss_conf 444345635877776643999967784407899999999999997198530353206----------8221---------
Q gi|254780750|r 634 FIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHI----------GIVD--------- 694 (920)
Q Consensus 634 fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a~i----------~~~D--------- 694 (920)
T Consensus 14 ~~l~~isl~v----~~Ge~~~i~GpSG~GKSTlLr~ia--------Gl~~p-~~G~I~~~g~~i~~~~~~~R~ig~VfQ~ 80 (213)
T cd03301 14 TALDDLNLDI----ADGEFVVLLGPSGCGKTTTLRMIA--------GLEEP-TSGRIYIGGRDVTDLPPKDRDIAMVFQN 80 (213)
T ss_pred EEECCCEEEE----CCCCEEEEECCCCCHHHHHHHHHH--------CCCCC-CCEEEEECCEECCCCCHHHCCEEEEECC
T ss_conf 9987617798----699899999999880999999997--------69999-8639999999999999767887899458
Q ss_pred -EEEEEEECCCCCCCC-----CCHH--------HHHHHHHHHH------------------HH-HCCCCCEEEEECCCCC
Q ss_conf -056765237661138-----5328--------9999999999------------------99-5899856999325889
Q gi|254780750|r 695 -KLFSRVGSADNLASG-----RSTF--------MVEMIETASI------------------LN-QATNQSFVILDEIGRG 741 (920)
Q Consensus 695 -~IftRiGa~D~l~~g-----~STF--------~vEm~e~~~I------------------L~-~at~~SLVllDElGrG 741 (920)
T Consensus 81 ~~LfP~ltV~eNI~~~l~~~~~~~~e~~~~v~~~l~~~gl~~~~~~~P~~LSGGqkQRVaiARAl~~~P~lLLlDEP~sa 160 (213)
T cd03301 81 YALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSN 160 (213)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 76465470999999899985999899999999999875992465099556999999999999998759998998388764
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH-HHHHH
Q ss_conf 88056799999999999972698499974875797-66430
Q gi|254780750|r 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELT-DLSKS 781 (920)
Q Consensus 742 Tst~DG~aiA~aile~l~~~~~~~~lfaTHy~eL~-~l~~~ 781 (920)
T Consensus 161 LD~~~r~~i-~~~l~~~~~~~~~T~i~vTHd~~ea~~l~dr 200 (213)
T cd03301 161 LDAKLRVQM-RAELKRLQQRLGTTTIYVTHDQVEAMTMADR 200 (213)
T ss_pred CCHHHHHHH-HHHHHHHHHHHCCEEEEECCCHHHHHHHCCE
T ss_conf 298999999-9999999997499899999998999996998