HHsearch alignment for GI: 254780750 and conserved domain: pfam05496
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=92.51 E-value=0.56 Score=25.75 Aligned_cols=62 Identities=27% Similarity=0.257 Sum_probs=41.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 99967784407899999999999997198530353206822105676523766113853289999999999995899856
Q gi|254780750|r 653 WLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 (920)
Q Consensus 653 ~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a~i~~~D~IftRiGa~D~l~~g~STF~vEm~e~~~IL~~at~~SL 732 (920)
T Consensus 53 ~lf~GPPG~GKTTlAriiAk~-----~~~~~~~--------------~s~-~--------~i~~~~di~~~l~~~~~~~I 104 (234)
T pfam05496 53 VLLYGPPGLGKTTLANIIANE-----MGVNIRI--------------TSG-P--------ALEKPGDLAAILTNLEPGDV 104 (234)
T ss_pred EEEECCCCCCHHHHHHHHHHH-----HCCCEEE--------------ECC-H--------HHHHHHHHHHHHHHCCCCCE
T ss_conf 788789999888999999984-----0875376--------------142-6--------66438999999984589988
Q ss_pred EEEECCCCCC
Q ss_conf 9993258898
Q gi|254780750|r 733 VILDEIGRGT 742 (920)
Q Consensus 733 VllDElGrGT 742 (920)
T Consensus 105 LFIDEIHr~n 114 (234)
T pfam05496 105 LFIDEIHRLN 114 (234)
T ss_pred EEEECHHHCC
T ss_conf 9996654358