BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780750|ref|YP_003065163.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str. psy62] (920 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780750|ref|YP_003065163.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040427|gb|ACT57223.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str. psy62] Length = 920 Score = 1889 bits (4892), Expect = 0.0, Method: Compositional matrix adjust. Identities = 920/920 (100%), Positives = 920/920 (100%) Query: 1 MTKEFSSPQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDAL 60 MTKEFSSPQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDAL Sbjct: 1 MTKEFSSPQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDAL 60 Query: 61 LASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR 120 LASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR Sbjct: 61 LASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR 120 Query: 121 GNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTS 180 GNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTS Sbjct: 121 GNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTS 180 Query: 181 NHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADY 240 NHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADY Sbjct: 181 NHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADY 240 Query: 241 YNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNL 300 YNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNL Sbjct: 241 YNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNL 300 Query: 301 EILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL 360 EILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL Sbjct: 301 EILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL 360 Query: 361 INPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGA 420 INPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGA Sbjct: 361 INPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGA 420 Query: 421 VEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 VEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL Sbjct: 421 VEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL Sbjct: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN Sbjct: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM Sbjct: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET Sbjct: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK Sbjct: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE Sbjct: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 Query: 841 KLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAW 900 KLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAW Sbjct: 841 KLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAW 900 Query: 901 TLEKYSTDEDSEPLSSKQEN 920 TLEKYSTDEDSEPLSSKQEN Sbjct: 901 TLEKYSTDEDSEPLSSKQEN 920 >gi|315121913|ref|YP_004062402.1| DNA mismatch repair protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495315|gb|ADR51914.1| DNA mismatch repair protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 912 Score = 1525 bits (3949), Expect = 0.0, Method: Compositional matrix adjust. Identities = 739/905 (81%), Positives = 823/905 (90%), Gaps = 3/905 (0%) Query: 1 MTKEFSSPQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDAL 60 MTKEFSS Q+ E ID+E++LKSSTPMMRQYIEIKSINPDSL+FYRMGDFYELFF+DA+ Sbjct: 1 MTKEFSSQQESCLENIDIEKDLKSSTPMMRQYIEIKSINPDSLLFYRMGDFYELFFEDAI 60 Query: 61 LASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR 120 +ASRCLGITLTKRGKHLGKDIPMCGVPVHT+NHYIQKLIKIGHRIA+CEQIE+PLEAK+R Sbjct: 61 IASRCLGITLTKRGKHLGKDIPMCGVPVHTSNHYIQKLIKIGHRIALCEQIETPLEAKQR 120 Query: 121 GNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTS 180 KSLVRRNVVRLVTPGT+TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTG+FKIS S Sbjct: 121 DKKSLVRRNVVRLVTPGTITEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGVFKISKS 180 Query: 181 NHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADY 240 N +RLISDIMRIDPRE+IFSE+EL ++EYKSLFETLGN+++ QP VFFD++++E RI DY Sbjct: 181 NRNRLISDIMRIDPREVIFSEEELLNSEYKSLFETLGNISIPQPCVFFDNAVAEKRIVDY 240 Query: 241 YNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNL 300 Y ITT DTFGSFSQ EKTAAAAAISYIKKTQ+++KPTIGYPEREDI+S LFIDSAARSNL Sbjct: 241 YGITTTDTFGSFSQAEKTAAAAAISYIKKTQLLDKPTIGYPEREDIKSILFIDSAARSNL 300 Query: 301 EILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL 360 EIL TLSGSRE SLLK IDY++TG GGRLFAERIASPLT+ KIN RLDSINFF++NP L Sbjct: 301 EILHTLSGSREGSLLKNIDYTLTGGGGRLFAERIASPLTNPQKINIRLDSINFFLKNPEL 360 Query: 361 INPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGA 420 + IQ ILKSSPD+PR+LSRLKI RGEP+DIAV+R+GIRSGI++L+ K D+PEELR A Sbjct: 361 VKSIQTILKSSPDIPRALSRLKIERGEPRDIAVVRNGIRSGIDMLDAISKKDIPEELRDA 420 Query: 421 VEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 V+KL+KLPQSLEKTLSSMLSDDLPT K+DGGFLRDGAD SLDE R LRDQSKRIIASLQL Sbjct: 421 VKKLQKLPQSLEKTLSSMLSDDLPTLKKDGGFLRDGADPSLDEARLLRDQSKRIIASLQL 480 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 KYAEET IKN+KIKHNN+LGYFIEV SS+A +L KD ESKDRFIHRQTM+NLTRFTTLEL Sbjct: 481 KYAEETNIKNIKIKHNNHLGYFIEVISSNAKILTKDFESKDRFIHRQTMTNLTRFTTLEL 540 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 IDLENRITNATN AL IELE+FE LS AIIEQSESL++AS+VI +ID+SIAL LA+EQN Sbjct: 541 IDLENRITNATNRALSIELEAFETLSKAIIEQSESLNDASKVIDVIDVSIALTTLAREQN 600 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 YCRPI+D+ST FIVKDGRHP+VEKTLK QSSKPFI NDCDLSC +DK +GKLWLLTGPNM Sbjct: 601 YCRPIVDDSTKFIVKDGRHPVVEKTLKYQSSKPFITNDCDLSCSDDKKNGKLWLLTGPNM 660 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GGKSTFLRQNALIVIMAQMGSYVPAS HIGIVDKLFSRVGSADNLASGRSTFMVEMIET Sbjct: 661 GGKSTFLRQNALIVIMAQMGSYVPASSVHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 ASILNQATNQSFVILDEIGRGT+TLDGLSIAWATIEYLHE N CRGLLATHFHELTDLSK Sbjct: 721 ASILNQATNQSFVILDEIGRGTSTLDGLSIAWATIEYLHEINLCRGLLATHFHELTDLSK 780 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 SL RFHNATLQVS+S EGI+FLHKVIPGIADHSYGIQVGKLAGLP +VISRAY++LK F Sbjct: 781 SLARFHNATLQVSESAEGIVFLHKVIPGIADHSYGIQVGKLAGLPPSVISRAYEVLKKFA 840 Query: 841 KLYHHNQKDMRLY--YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 KLY NQKD+R Y ++ +ESK ++SKND LF+EKI ++ +EM+PL AL+TLY +K Sbjct: 841 KLYDKNQKDVREYGQISKLPPEESKESISKND-LFLEKINQIDPNEMTPLKALETLYTLK 899 Query: 899 AWTLE 903 AW LE Sbjct: 900 AWALE 904 >gi|86356045|ref|YP_467937.1| DNA mismatch repair protein [Rhizobium etli CFN 42] gi|123513236|sp|Q2KD76|MUTS_RHIEC RecName: Full=DNA mismatch repair protein mutS gi|86280147|gb|ABC89210.1| DNA mismatch repair protein [Rhizobium etli CFN 42] Length = 908 Score = 1092 bits (2823), Expect = 0.0, Method: Compositional matrix adjust. Identities = 513/888 (57%), Positives = 675/888 (76%), Gaps = 13/888 (1%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E+ S+TPMM QYIEIK+ NP SL+FYRMGDFYELFF+DAL ASR LGITLTKRG+H+G+ Sbjct: 21 ESRASATPMMEQYIEIKANNPGSLLFYRMGDFYELFFEDALEASRALGITLTKRGQHMGQ 80 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 DIPMCGVPVH A+ Y+QKLI +G R+A+CEQIE P +AKKRG KS+V+R+V+RLVTPGT+ Sbjct: 81 DIPMCGVPVHAADDYLQKLISLGFRVAVCEQIEDPAQAKKRGAKSVVKRDVIRLVTPGTI 140 Query: 140 TEDQLLSPTDSNYLMAVARIR----TEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPR 195 TE++LLSP++SNYLMA+ARIR + A+AWIDISTG+F+++ + RL++DI+RIDPR Sbjct: 141 TEEKLLSPSESNYLMALARIRGGAEPQLALAWIDISTGVFRLAETESSRLLADILRIDPR 200 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQV 255 E+I + AE K +F+ LG AV QP+V FD + +E RIA Y+ ++T+D FGSFS+ Sbjct: 201 ELILPDTIFHDAELKPVFDVLGRTAVPQPSVLFDSASAEGRIARYFGVSTLDGFGSFSRA 260 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 E AAAAA++Y++KTQ+ +P +G PERE STLFID A R+NLE+ RTLSG R SLL Sbjct: 261 ELAAAAAAVAYVEKTQIAERPPLGKPERESAASTLFIDPATRANLELARTLSGDRNGSLL 320 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 K ID ++TG G RL AER+ SPLTD +IN RLDSI F I+ P L ++ LK PD+P Sbjct: 321 KAIDRTVTGGGARLLAERLMSPLTDPARINARLDSIGFLIEEPSLCGKLRDTLKHVPDMP 380 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R+LSRL + RG P+D+ IR G+++ + +L LPEEL A+ L+ LP LE L Sbjct: 381 RALSRLALDRGGPRDLWAIRQGLQAAGGLADLLASAMLPEELDQALSGLQALPAGLETLL 440 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + L+D+LP KRDGGFLRDGA A LDE R+LRDQS+R+IA LQL+YAEET I++LKIKH Sbjct: 441 AETLADELPLLKRDGGFLRDGASAELDEVRALRDQSRRVIAGLQLQYAEETGIRSLKIKH 500 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 NN LGYFIEVT+ +A+ + + E+K RFIHRQTM++ RFTT EL DLE+RI NA + AL Sbjct: 501 NNILGYFIEVTAGNAAPMTETSEAKSRFIHRQTMASAMRFTTTELADLESRIANAADRAL 560 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 IELE+F+ ++ A++ Q+ES+ + ++ +A+ID++ LA+LA+EQ YCRP +D S F ++ Sbjct: 561 TIELEAFDRMTAAVVAQAESIKSGARALAVIDVAAGLALLAEEQAYCRPQVDGSKMFAIE 620 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ L++Q+ PF+AN+CDLS G +WLLTGPNMGGKSTFLRQNALI I Sbjct: 621 GGRHPVVEQALRRQAGGPFVANNCDLSPKTGDKDGAIWLLTGPNMGGKSTFLRQNALIAI 680 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQMGS+VPA+ AHIGIVD+LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA+++S VIL Sbjct: 681 MAQMGSFVPATSAHIGIVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQASDRSLVIL 740 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGTAT DGLSIAWA +E+LHE NRCRGL ATHFHELT LS+ L R NAT++V + Sbjct: 741 DEIGRGTATFDGLSIAWAAVEHLHEANRCRGLFATHFHELTVLSEKLGRLSNATMRVKEW 800 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DM 850 + +IFLH+V PG AD SYGIQV +LAGLP +V++RA D+L E N D+ Sbjct: 801 DGDVIFLHEVGPGAADRSYGIQVARLAGLPASVVARARDVLTRLEDADRKNPASQLIDDL 860 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 L+ ++ +++ SK + E ++ ++LD+M+P A+ LY +K Sbjct: 861 PLFQVAVRREDAARGPSKVE----EALRAMSLDDMTPREAMDALYDLK 904 >gi|44888231|sp|Q8UIF2|MUTS_AGRT5 RecName: Full=DNA mismatch repair protein mutS Length = 904 Score = 1082 bits (2798), Expect = 0.0, Method: Compositional matrix adjust. Identities = 517/890 (58%), Positives = 674/890 (75%), Gaps = 14/890 (1%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 EE+ ++TPMM QYIEIK+ NP SL+FYRMGDFYELFFDDA+ ASR LGITLTKRG+H+G Sbjct: 13 EESRATATPMMEQYIEIKANNPGSLLFYRMGDFYELFFDDAVEASRALGITLTKRGQHMG 72 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 DIPMCGVPVH A+ Y+QKLI G+R+A+CEQIE P EAKKRG+KS+V+R+VVRLVTPGT Sbjct: 73 HDIPMCGVPVHAADDYLQKLILRGYRVAVCEQIEDPAEAKKRGSKSVVKRDVVRLVTPGT 132 Query: 139 LTEDQLLSPTDSNYLMAVARIR----TEWAIAWIDISTGIFKISTSNHDRLISDIMRIDP 194 LTE++LLSPT+SNYLMA+ARIR ++A+AWIDISTG+F+++ + RL++DI RIDP Sbjct: 133 LTEEKLLSPTESNYLMALARIRGSAEAQFALAWIDISTGVFRLAETTLTRLLADIWRIDP 192 Query: 195 REIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 RE+I ++ E + +F+ LG VAV QP + FD +++E RIA Y+N++T+D FG+FS+ Sbjct: 193 RELIVADSLFHDEELRPVFDVLGRVAVPQPAILFDSAVAEGRIARYFNVSTLDGFGTFSR 252 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSL 314 VE AAAAA++Y++KTQ+ +P +G PERE STLFID A R+NLE+++TLSG R+ SL Sbjct: 253 VEMAAAAAAVAYVEKTQIAERPPLGAPERESAASTLFIDPATRANLELVKTLSGDRDGSL 312 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L ++ ++TG G RL AER+ SPLTD +IN RLD++ + I + L + ++ LK D+ Sbjct: 313 LHALNRTVTGGGARLLAERLMSPLTDPERINARLDAVAYLIDDVSLCDGLRDALKHVADM 372 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 PR+LSRL + RG P+D+ IR G+ S I + LP+EL A+ LK LP +LE Sbjct: 373 PRALSRLALERGGPRDLGAIRQGLVSAEKIAVILDGGLLPDELAKALRDLKALPGALEAM 432 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L SML+DDLP KRDGGFLR+GA+ LDE R+LRDQS+R+IA LQL+YA+ET IK+LKIK Sbjct: 433 LGSMLADDLPLLKRDGGFLREGANPELDEVRALRDQSRRVIAGLQLQYADETGIKSLKIK 492 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 HNN LGYFIEVT+ +A V+ E+K RFIHRQTM+ RFTT EL DLE+RI NA A Sbjct: 493 HNNVLGYFIEVTAGNADVMMATDEAKARFIHRQTMAGAMRFTTTELADLESRIANAAAEA 552 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L +ELE+FE + A+++Q+E++ + +A+ID++ +LA LA EQ YCRPI+D S F + Sbjct: 553 LTMELEAFERMVEAVVQQAEAIKAGALALAVIDVASSLAYLATEQAYCRPIVDASMTFSI 612 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 K GRHP+VE+ L++QS+ PFIAN+CDLS N +G +WLLTGPNMGGKSTFLRQNALI Sbjct: 613 KGGRHPVVEQALRRQSAGPFIANNCDLSAVNGGKNGAIWLLTGPNMGGKSTFLRQNALIA 672 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 I+AQ+GS+VPA AHIG+VD+LFSRVG++D+LA GRSTFMVEM+ETA+ILNQAT++S VI Sbjct: 673 ILAQIGSFVPAEAAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQATDRSLVI 732 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDEIGRGTAT DGLSIAWA +E+LHE NRCRGL ATHFHELT LS+ L R NAT++V + Sbjct: 733 LDEIGRGTATFDGLSIAWAAVEHLHEVNRCRGLFATHFHELTVLSEKLGRLSNATMRVKE 792 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----D 849 +IFLH+V PG AD SYGIQV +LAGLP +V+ RA ++L E N D Sbjct: 793 WEGDVIFLHEVGPGAADRSYGIQVARLAGLPASVVERAREVLTKLEDADRKNPASQLIDD 852 Query: 850 MRLYYPEIQTKES-KNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L+ ++ +E+ K SK + E +K N DEM+P AL LYA+K Sbjct: 853 LPLFQIAVRREETRKAGPSKVE----EALKSFNPDEMTPREALDALYALK 898 >gi|241202801|ref|YP_002973897.1| DNA mismatch repair protein MutS [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856691|gb|ACS54358.1| DNA mismatch repair protein MutS [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 908 Score = 1077 bits (2784), Expect = 0.0, Method: Compositional matrix adjust. Identities = 513/888 (57%), Positives = 671/888 (75%), Gaps = 13/888 (1%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E+ S+TPMM Q+IEIK+ NP SL+FYRMGDFYELFF+DAL ASR LGITLTKRG+H+G+ Sbjct: 21 ESRASATPMMEQFIEIKANNPGSLLFYRMGDFYELFFEDALEASRALGITLTKRGQHMGQ 80 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 DIPMCGVPVH A+ Y+QKLI +G R+A+CEQIE P EAKKRG KS+V+R+VVRLVTPGT+ Sbjct: 81 DIPMCGVPVHAADDYLQKLISLGFRVAVCEQIEDPAEAKKRGAKSVVKRDVVRLVTPGTI 140 Query: 140 TEDQLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFKISTSNHDRLISDIMRIDPR 195 TE++LLSP++SNYLMA+ RIR A+AWIDISTG+F+++ + RL++DI+RIDPR Sbjct: 141 TEEKLLSPSESNYLMALTRIRASGEALLALAWIDISTGVFRLAETEASRLLADILRIDPR 200 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQV 255 E+I + E K +F+ LG AV QP+V FD + +E RIA Y+ + T+D FG+FS+ Sbjct: 201 ELILPDTIFHDPELKPVFDVLGRTAVPQPSVLFDSASAEGRIARYFGVATLDGFGTFSRA 260 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 E AAAAA++Y++KTQ+ +P +G PERE STLFID A R+NLE+ RTLSG R SLL Sbjct: 261 ELAAAAAAVAYVEKTQIAERPPLGKPERESAASTLFIDPATRANLELARTLSGDRNGSLL 320 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 K ID ++TG G RL AER+ SPLTD +IN RLDSI F I P+L ++ LK PD+P Sbjct: 321 KAIDRTVTGGGARLLAERLMSPLTDPARINARLDSIGFLIDEPLLCGNLRDTLKHVPDMP 380 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R+LSRL + RG P+D+ IR G+ + I + K LPEEL A+ L+ LP ++EK L Sbjct: 381 RALSRLALDRGGPRDLWAIRQGLEAAGGIAAMLGKAMLPEELGQALSGLQALPAAVEKLL 440 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + L+D+LP KRDGGFLRDGA A LDE R+LRDQS+R+IA LQL+YAEET I++LKIKH Sbjct: 441 AETLADELPLLKRDGGFLRDGASAELDEVRALRDQSRRVIAGLQLQYAEETGIRSLKIKH 500 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 NN LGYFIEVT+ +AS + + E+K RFIHRQTM+N RFTT EL DLE+RI NA + AL Sbjct: 501 NNVLGYFIEVTAGNASPMTETAEAKARFIHRQTMANAMRFTTTELADLESRIANAADQAL 560 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 IELE+F+ ++ A++ ++E++ + ++ +A+ID++ LA+LA+EQ YCRP +D S F ++ Sbjct: 561 TIELEAFDRMTAAVVAEAEAIKSGARALAVIDVAAGLALLAEEQAYCRPQVDGSKMFAIE 620 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ L++Q+ PF+AN CDLS G +WLLTGPNMGGKSTFLRQNALI I Sbjct: 621 GGRHPVVEQALRRQAGGPFVANHCDLSPRTGDRDGAIWLLTGPNMGGKSTFLRQNALISI 680 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +AQMGS+VPA+ AHIGIVD+LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA+++S VIL Sbjct: 681 LAQMGSFVPATSAHIGIVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQASDRSLVIL 740 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGTAT DGLSIAWA +E+LHE NRCRGL ATHFHELT LS+ L R NAT++V + Sbjct: 741 DEIGRGTATFDGLSIAWAAVEHLHEANRCRGLFATHFHELTVLSEKLGRLSNATMRVKEW 800 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DM 850 + +IFLH+V PG AD SYGIQV +LAGLP +V++RA D+L E N D+ Sbjct: 801 DGDVIFLHEVGPGAADRSYGIQVARLAGLPASVVARARDVLTRLEDADRKNPASQLIDDL 860 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 L+ ++ +E+ SK + E +K ++LD+M+P A+ LY +K Sbjct: 861 PLFQVAVRREETARGTSKVE----EALKAMSLDDMTPREAMDALYDLK 904 >gi|159184268|ref|NP_353377.2| DNA mismatch repair protein [Agrobacterium tumefaciens str. C58] gi|159139595|gb|AAK86162.2| DNA mismatch repair protein, MutS family [Agrobacterium tumefaciens str. C58] Length = 883 Score = 1073 bits (2775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 513/881 (58%), Positives = 667/881 (75%), Gaps = 14/881 (1%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QYIEIK+ NP SL+FYRMGDFYELFFDDA+ ASR LGITLTKRG+H+G DIPMCGVP Sbjct: 1 MMEQYIEIKANNPGSLLFYRMGDFYELFFDDAVEASRALGITLTKRGQHMGHDIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 VH A+ Y+QKLI G+R+A+CEQIE P EAKKRG+KS+V+R+VVRLVTPGTLTE++LLSP Sbjct: 61 VHAADDYLQKLILRGYRVAVCEQIEDPAEAKKRGSKSVVKRDVVRLVTPGTLTEEKLLSP 120 Query: 148 TDSNYLMAVARIR----TEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 T+SNYLMA+ARIR ++A+AWIDISTG+F+++ + RL++DI RIDPRE+I ++ Sbjct: 121 TESNYLMALARIRGSAEAQFALAWIDISTGVFRLAETTLTRLLADIWRIDPRELIVADSL 180 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 E + +F+ LG VAV QP + FD +++E RIA Y+N++T+D FG+FS+VE AAAAA Sbjct: 181 FHDEELRPVFDVLGRVAVPQPAILFDSAVAEGRIARYFNVSTLDGFGTFSRVEMAAAAAA 240 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 ++Y++KTQ+ +P +G PERE STLFID A R+NLE+++TLSG R+ SLL ++ ++T Sbjct: 241 VAYVEKTQIAERPPLGAPERESAASTLFIDPATRANLELVKTLSGDRDGSLLHALNRTVT 300 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G G RL AER+ SPLTD +IN RLD++ + I + L + ++ LK D+PR+LSRL + Sbjct: 301 GGGARLLAERLMSPLTDPERINARLDAVAYLIDDVSLCDGLRDALKHVADMPRALSRLAL 360 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 RG P+D+ IR G+ S I + LP+EL A+ LK LP +LE L SML+DDL Sbjct: 361 ERGGPRDLGAIRQGLVSAEKIAVILDGGLLPDELAKALRDLKALPGALEAMLGSMLADDL 420 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P KRDGGFLR+GA+ LDE R+LRDQS+R+IA LQL+YA+ET IK+LKIKHNN LGYFI Sbjct: 421 PLLKRDGGFLREGANPELDEVRALRDQSRRVIAGLQLQYADETGIKSLKIKHNNVLGYFI 480 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EVT+ +A V+ E+K RFIHRQTM+ RFTT EL DLE+RI NA AL +ELE+FE Sbjct: 481 EVTAGNADVMMATDEAKARFIHRQTMAGAMRFTTTELADLESRIANAAAEALTMELEAFE 540 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 + A+++Q+E++ + +A+ID++ +LA LA EQ YCRPI+D S F +K GRHP+VE Sbjct: 541 RMVEAVVQQAEAIKAGALALAVIDVASSLAYLATEQAYCRPIVDASMTFSIKGGRHPVVE 600 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 + L++QS+ PFIAN+CDLS N +G +WLLTGPNMGGKSTFLRQNALI I+AQ+GS+V Sbjct: 601 QALRRQSAGPFIANNCDLSAVNGGKNGAIWLLTGPNMGGKSTFLRQNALIAILAQIGSFV 660 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA AHIG+VD+LFSRVG++D+LA GRSTFMVEM+ETA+ILNQAT++S VILDEIGRGTA Sbjct: 661 PAEAAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQATDRSLVILDEIGRGTA 720 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DGLSIAWA +E+LHE NRCRGL ATHFHELT LS+ L R NAT++V + +IFLH Sbjct: 721 TFDGLSIAWAAVEHLHEVNRCRGLFATHFHELTVLSEKLGRLSNATMRVKEWEGDVIFLH 780 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DMRLYYPEIQ 858 +V PG AD SYGIQV +LAGLP +V+ RA ++L E N D+ L+ ++ Sbjct: 781 EVGPGAADRSYGIQVARLAGLPASVVERAREVLTKLEDADRKNPASQLIDDLPLFQIAVR 840 Query: 859 TKES-KNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +E+ K SK + E +K N DEM+P AL LYA+K Sbjct: 841 REETRKAGPSKVE----EALKSFNPDEMTPREALDALYALK 877 >gi|190890059|ref|YP_001976601.1| DNA mismatch repair protein [Rhizobium etli CIAT 652] gi|190695338|gb|ACE89423.1| DNA mismatch repair protein [Rhizobium etli CIAT 652] Length = 908 Score = 1070 bits (2768), Expect = 0.0, Method: Compositional matrix adjust. Identities = 508/884 (57%), Positives = 663/884 (75%), Gaps = 5/884 (0%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E+ S+TPMM QYIEIK+ NP SL+FYRMGDFYELFF+DAL ASR LGITLTKRG+H+G+ Sbjct: 21 ESRASATPMMEQYIEIKANNPGSLLFYRMGDFYELFFEDALEASRALGITLTKRGQHMGQ 80 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 DIPMCGVPVH A+ Y+QKLI +G R+A+CEQ+E P EAKKRG KS+V+R+VVRLVTPGT+ Sbjct: 81 DIPMCGVPVHAADDYLQKLISLGFRVAVCEQVEDPAEAKKRGGKSVVKRDVVRLVTPGTI 140 Query: 140 TEDQLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFKISTSNHDRLISDIMRIDPR 195 TE++LLSP++SNYLMA+ARIR A+AWIDISTG+F+++ + RL++DI+RIDPR Sbjct: 141 TEEKLLSPSESNYLMALARIRGGAEPVLALAWIDISTGVFRLAETESSRLLADILRIDPR 200 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQV 255 E+I + E K +F+ LG AV QP V FD + +E RIA Y+ ++T+D FGSFS+ Sbjct: 201 ELILPDTIFHDPELKPVFDVLGRTAVPQPAVLFDSASAEGRIARYFGVSTLDGFGSFSRA 260 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 E AAAAA++Y++KTQ+ +P +G PERE STLFID A R+NLE+ RTLSG R SLL Sbjct: 261 ELAAAAAAVAYVEKTQIAERPPLGQPERESAASTLFIDPATRANLELARTLSGDRNGSLL 320 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 K ID ++TG G RL AER+ SPLTD +IN RLDSI F I P L ++ LK PD+P Sbjct: 321 KAIDRTVTGGGARLLAERLMSPLTDPARINARLDSIGFLIDEPSLCGRLRDTLKHVPDMP 380 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R+LSRL + RG P+D+A IR G+++ + +L LPEEL + L+ LP LE L Sbjct: 381 RALSRLALDRGGPRDLAAIRQGLQAASGLADLLATAMLPEELGETLSGLRALPAELETLL 440 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + L+D+LP KRDGGFLRDGA LDE R+LRDQS+R+IA LQL+YAEET I++LKIKH Sbjct: 441 AETLADELPLLKRDGGFLRDGASGELDEVRALRDQSRRVIAGLQLQYAEETGIRSLKIKH 500 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 NN LGYFIEVT+ +A + E+K RFIHRQTM++ RFTT EL DLE+RI NA + AL Sbjct: 501 NNILGYFIEVTAGNAGPMTDTAEAKARFIHRQTMASAMRFTTTELADLESRIANAADRAL 560 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 IELE+F+ ++ A++ ++E++ + ++ +A+ID++ LA+LA+EQ YCRP +D S F ++ Sbjct: 561 SIELEAFDKMTAAVVAEAEAIKSGARALAVIDVAAGLALLAEEQAYCRPQVDGSKMFAIE 620 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ L++Q+ PF+AN CDLS + G +WLLTGPNMGGKSTFLRQNALI I Sbjct: 621 GGRHPVVEQALRRQAGGPFVANRCDLSPKDGAKDGAIWLLTGPNMGGKSTFLRQNALIAI 680 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +AQMGS+VPA+ AHIGIVD+LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA+++S VIL Sbjct: 681 LAQMGSFVPATSAHIGIVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQASDRSLVIL 740 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGTAT DGLSIAWA +E+LHE NRCRGL ATHFHELT LS+ L R NAT++V + Sbjct: 741 DEIGRGTATFDGLSIAWAAVEHLHEANRCRGLFATHFHELTVLSEKLGRLSNATMRVKEW 800 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL-YY 854 + +IFLH+V PG AD SYGIQV +LAGLP +V++RA D+L E N + Sbjct: 801 DGDVIFLHEVGPGAADRSYGIQVARLAGLPASVVARARDVLTRLEDADRKNPASQLIDDL 860 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P Q + + ++ E +K ++LD+M+P A+ LY +K Sbjct: 861 PLFQVAVRREDAARGPSNVEEALKAMSLDDMTPREAMDALYNLK 904 >gi|325291779|ref|YP_004277643.1| DNA mismatch repair protein MutS [Agrobacterium sp. H13-3] gi|325059632|gb|ADY63323.1| DNA mismatch repair protein MutS [Agrobacterium sp. H13-3] Length = 904 Score = 1068 bits (2763), Expect = 0.0, Method: Compositional matrix adjust. Identities = 514/890 (57%), Positives = 671/890 (75%), Gaps = 14/890 (1%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 EE+ ++TPMM QYIEIK+ NP SL+FYRMGDFYELFFDDA+ ASR LGITLTKRG+H+G Sbjct: 13 EESRATATPMMEQYIEIKANNPGSLLFYRMGDFYELFFDDAVEASRSLGITLTKRGQHMG 72 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 +DIPMCGVPVH A+ Y+QKLI G+R+A+CEQ+E P EAKKRG+KS+V+R+VVRLVTPGT Sbjct: 73 QDIPMCGVPVHAADDYLQKLILRGYRVAVCEQVEDPAEAKKRGSKSVVKRDVVRLVTPGT 132 Query: 139 LTEDQLLSPTDSNYLMAVARIR----TEWAIAWIDISTGIFKISTSNHDRLISDIMRIDP 194 LTE++LLSPT+SNYLMA+ARIR ++A+AWIDISTG+F+++ + RL++DI RIDP Sbjct: 133 LTEEKLLSPTESNYLMALARIRGSAEAQFALAWIDISTGVFRLAETTLTRLLADIWRIDP 192 Query: 195 REIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 RE+I ++ E + +F+ LG VAV QP + FD + +E RIA Y+N++T+D FG+FS+ Sbjct: 193 RELIVADSLFHDEELRPVFDMLGRVAVPQPAILFDSATAEGRIARYFNVSTLDGFGTFSR 252 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSL 314 VE AAAAA++Y++KTQ+ +P +G PERE STLFID A R+NLE+++TLSG R+ SL Sbjct: 253 VEMAAAAAAVAYVEKTQIAERPPLGAPERESAASTLFIDPATRANLELVKTLSGERDGSL 312 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L ++ ++TG G RL AER+ SPLTD ++N RLD++ + I + L + ++ LK D+ Sbjct: 313 LHALNRTVTGGGARLLAERLMSPLTDPERVNARLDAVAYLIDDVSLCDGLRDALKQVADM 372 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 PR+LSRL + RG P+D+ IR G+ S I + + LP+EL A+ LK LP LE Sbjct: 373 PRALSRLALERGGPRDLGAIRQGLASAERIAAILDQGLLPQELAAALADLKALPGGLEAM 432 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L SML+DDLP KRDGGFLR+GA+ LD+ R+LRDQS+R+IA LQL+YAEET IK+LKIK Sbjct: 433 LGSMLADDLPLLKRDGGFLREGANPELDDVRALRDQSRRVIAGLQLQYAEETGIKSLKIK 492 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 HNN LGYFIEVT+ +A V+ E+K RFIHRQTM+ RFTT EL DLE+RI NA A Sbjct: 493 HNNVLGYFIEVTAGNADVMMATDEAKARFIHRQTMAGAMRFTTTELADLESRIANAAAEA 552 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L +ELE+FE + A++ Q+E++ + +A+ID++ +LA LA EQ YCRPI+D S F + Sbjct: 553 LTMELEAFERMVEAVVRQAEAIKAGALALAVIDVASSLAYLATEQAYCRPIVDASMTFAI 612 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 GRHP+VE+ L++QS+ PFIAN+CDLS +G +WLLTGPNMGGKSTFLRQNALI Sbjct: 613 TGGRHPVVEQALRRQSAGPFIANNCDLSAAEGGKNGAIWLLTGPNMGGKSTFLRQNALIA 672 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 I+AQ+GS+VPA AHIGIVD+LFSRVG++D+LA GRSTFMVEM+ETA+ILNQAT++S VI Sbjct: 673 ILAQIGSFVPAEAAHIGIVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQATDRSLVI 732 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDEIGRGTAT DGLSIAWA +E+LHE NRCRGL ATHFHELT LS+ L R NAT++V + Sbjct: 733 LDEIGRGTATFDGLSIAWAAVEHLHEVNRCRGLFATHFHELTVLSEKLGRLSNATMRVKE 792 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----D 849 +IFLH+V PG AD SYGIQV +LAGLP +V+ RA ++L E N D Sbjct: 793 WEGDVIFLHEVGPGAADRSYGIQVARLAGLPASVVERAREVLTKLEDADRKNPASQLIDD 852 Query: 850 MRLYYPEIQTKES-KNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L+ ++ +E+ K SK + E +K N DEM+P AL LYA+K Sbjct: 853 LPLFQIAVRREETRKAGPSKVE----EALKGFNPDEMTPREALDALYALK 898 >gi|209547644|ref|YP_002279561.1| DNA mismatch repair protein MutS [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533400|gb|ACI53335.1| DNA mismatch repair protein MutS [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 880 Score = 1062 bits (2747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 507/880 (57%), Positives = 666/880 (75%), Gaps = 13/880 (1%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QYIEIK+ NP SL+FYRMGDFYELFF+DAL ASR LGITLTKRG+H+G+DIPMCGVP Sbjct: 1 MMEQYIEIKANNPGSLLFYRMGDFYELFFEDALEASRALGITLTKRGQHMGQDIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 VH A+ Y+QKLI +G R+A+CEQIE P EAKKRG KS+V+R+VVRLVTPGT+TE++LLSP Sbjct: 61 VHAADDYLQKLISLGFRVAVCEQIEDPAEAKKRGGKSVVKRDVVRLVTPGTITEEKLLSP 120 Query: 148 TDSNYLMAVARIRTE----WAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 ++SNYLMA+ RIR A+AWIDISTG+F+++ + RL++DI+RIDPRE+I E Sbjct: 121 SESNYLMALTRIRGGAEPLLALAWIDISTGVFRLAETEASRLLADILRIDPRELILPETI 180 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 E K +F+ LG AV QP+V FD + +E RIA Y+ ++T+D FG+FS+ E AAAAA Sbjct: 181 FHDPELKPVFDVLGRTAVPQPSVLFDSASAEGRIARYFGVSTLDGFGTFSRAELAAAAAA 240 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 ++Y++KTQ+ +P +G PERE STLFID A R+NLE+ RTLSG R SLLK ID ++T Sbjct: 241 VAYVEKTQIAERPPLGKPERESAASTLFIDPATRANLELARTLSGDRNGSLLKAIDRTVT 300 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G G RL AER+ SPLTD +IN RLDSI F I P L ++ LK PD+PR+LSRL + Sbjct: 301 GGGARLLAERLMSPLTDPARINARLDSIGFLIDEPSLCGNLRDTLKHVPDMPRALSRLAL 360 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 RG P+D++ IR G+++ ++ + LPEEL A+ L+ LP +LE L+ L+D+L Sbjct: 361 DRGGPRDLSAIRQGLQAANDVAAMLASAMLPEELGQALSGLQALPAALETLLAETLADEL 420 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P KRDGGFLRDGA A LDE R+LRDQS+R+IA LQL+YAEE I++LKIKHNN LGYFI Sbjct: 421 PLLKRDGGFLRDGASAELDEVRALRDQSRRVIAGLQLQYAEEIGIRSLKIKHNNILGYFI 480 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EVT+ +AS + E+K RFIHRQTM++ RFTT EL DLE+RI NA + AL IEL +FE Sbjct: 481 EVTAGNASPMTDTAEAKARFIHRQTMASAMRFTTTELADLESRIANAADRALTIELAAFE 540 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 ++ A++ ++E++ + ++ +A+ID++ +LA+LA+EQ YCRP +D S F + GRHP+VE Sbjct: 541 RMTAAVVAEAEAIKSGARALAVIDVAASLALLAEEQAYCRPQVDGSKMFAIDGGRHPVVE 600 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 + L++Q+S PF+AN+CDLS G +WLLTGPNMGGKSTFLRQNALI I+AQMGS+V Sbjct: 601 QALRRQASGPFVANNCDLSPKAGDKDGAIWLLTGPNMGGKSTFLRQNALIAILAQMGSFV 660 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA+ AHIGIVD+LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA+++S VILDEIGRGTA Sbjct: 661 PATSAHIGIVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQASDRSLVILDEIGRGTA 720 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DGLSIAWA++E+LHE NRCRGL ATHFHELT LS+ L R NAT++V + + +IFLH Sbjct: 721 TFDGLSIAWASVEHLHEANRCRGLFATHFHELTVLSEKLVRLSNATMRVKEWDGDVIFLH 780 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DMRLYYPEIQ 858 +V PG AD SYGIQV +LAGLP +V++RA D+L E N D+ L+ ++ Sbjct: 781 EVGPGAADRSYGIQVARLAGLPASVVTRARDVLTRLEDADRKNPASQLIDDLPLFQVAVR 840 Query: 859 TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +++ SK + E +K ++LD+M+P A+ LY +K Sbjct: 841 REDTARGPSKVE----ETLKAMSLDDMTPREAMDALYDLK 876 >gi|116250175|ref|YP_766013.1| DNA mismatch repair protein MutS [Rhizobium leguminosarum bv. viciae 3841] gi|189083183|sp|Q1MMA5|MUTS_RHIL3 RecName: Full=DNA mismatch repair protein mutS gi|115254823|emb|CAK05897.1| putative DNA mismatch repair protein [Rhizobium leguminosarum bv. viciae 3841] Length = 908 Score = 1061 bits (2743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 514/888 (57%), Positives = 675/888 (76%), Gaps = 13/888 (1%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E+ S+TPMM QYIEIK+ NPDSL+FYRMGDFYELFF+DAL ASR LGITLTKRG+H+G+ Sbjct: 21 ESRASATPMMEQYIEIKANNPDSLLFYRMGDFYELFFEDALEASRALGITLTKRGQHMGQ 80 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 DIPMCGVPVH A+ Y+QKLI +G R+A+CEQIE P EAKKRG KS+VRR+VVRLVTPGT+ Sbjct: 81 DIPMCGVPVHAADDYLQKLISLGFRVAVCEQIEDPAEAKKRGAKSVVRRDVVRLVTPGTI 140 Query: 140 TEDQLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFKISTSNHDRLISDIMRIDPR 195 TE++LLSP++SNYLMA+ RIR A+AWIDISTG+F+++ + RL++DI+RIDPR Sbjct: 141 TEEKLLSPSESNYLMALTRIRGSGEALLALAWIDISTGVFRLAETEASRLLADILRIDPR 200 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQV 255 E+I + E K +F+ LG AV QP+V FD + +E RIA Y+ + T+D FG+FS+ Sbjct: 201 ELILPDTIFHDPELKPVFDVLGRTAVPQPSVLFDSASAEGRIARYFGVATLDGFGTFSRA 260 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 E AAAAA++Y++KTQ+ +P +G PERE STLFID A R+NLE+ RTLSG R SLL Sbjct: 261 ELAAAAAAVAYVEKTQIAERPPLGKPERESAASTLFIDPATRANLELARTLSGDRNGSLL 320 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 K ID ++TG G RL AER+ SPLTD +IN RLDSI F I P+L ++ LK PD+P Sbjct: 321 KAIDRTVTGGGARLLAERLMSPLTDPARINARLDSIGFLIDEPLLCGNLRDTLKHVPDMP 380 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R+LSRL + RG P+D++ IR G+ + + + K LPEEL A+ +L+ LP +LEK L Sbjct: 381 RALSRLALDRGGPRDLSAIRQGLDAAGGVAVMLGKAVLPEELGQALSELQALPATLEKLL 440 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + L+++LP KRDGGFLRDGA+A LDE R+LRDQS+R+IA LQL+YAEET I++LKIKH Sbjct: 441 AETLAEELPLLKRDGGFLRDGANAELDEVRALRDQSRRVIAGLQLQYAEETGIRSLKIKH 500 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 NN LGYFIEVT+ +AS + + ++K RFIHRQTM+N RFTT EL DLE+RI NA + AL Sbjct: 501 NNVLGYFIEVTAGNASPMTETADAKARFIHRQTMANAMRFTTTELADLESRIANAADQAL 560 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 IELE+F+ ++ A++ ++E++ + ++ +A+ID++ LA+LA+EQ YCRP +D S F ++ Sbjct: 561 TIELEAFDRMTAAVVAEAEAIKSGARALAVIDVAAGLALLAEEQAYCRPQVDGSKMFAIE 620 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ L++Q+ PF+AN CDLS G +WLLTGPNMGGKSTFLRQNALI I Sbjct: 621 SGRHPVVEQALRRQAGGPFVANHCDLSPKTGDRDGAIWLLTGPNMGGKSTFLRQNALISI 680 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +AQMGS+VPA+ AHIGIVD+LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA+++S VIL Sbjct: 681 LAQMGSFVPATSAHIGIVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQASDRSLVIL 740 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGTAT DGLSIAWA +E+LHE NRCRGL ATHFHELT LS+ L R NAT++V + Sbjct: 741 DEIGRGTATFDGLSIAWAAVEHLHEANRCRGLFATHFHELTVLSEKLGRLSNATMRVKEW 800 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DM 850 + +IFLH+V PG AD SYGIQV +LAGLP +V++RA D+L E N D+ Sbjct: 801 DGDVIFLHEVGPGAADRSYGIQVARLAGLPASVVARARDVLTRLEDADRKNPASQLIDDL 860 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 L+ ++ +E+ SK + E +K ++LD+M+P A+ LY +K Sbjct: 861 PLFQVAVRREETARGASKVE----EALKAMSLDDMTPREAMDALYDLK 904 >gi|222147340|ref|YP_002548297.1| DNA mismatch repair protein MutS [Agrobacterium vitis S4] gi|221734330|gb|ACM35293.1| DNA mismatch repair protein MutS family [Agrobacterium vitis S4] Length = 883 Score = 1050 bits (2715), Expect = 0.0, Method: Compositional matrix adjust. Identities = 497/879 (56%), Positives = 659/879 (74%), Gaps = 10/879 (1%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QYIEIK+ NP SL+FYRMGDFYELFF+DA+ ASR LGITLTKRG+HLG+DIPMCGVP Sbjct: 1 MMEQYIEIKANNPGSLLFYRMGDFYELFFEDAVEASRALGITLTKRGQHLGQDIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 VH ++ Y+QKLI +G R+A+CEQ+E P EAKKRG+KS+V+R+VVRLVTPGTLTE++LLSP Sbjct: 61 VHASDDYLQKLITLGFRVAVCEQVEDPAEAKKRGSKSVVKRDVVRLVTPGTLTEEKLLSP 120 Query: 148 TDSNYLMAVARIRT---EWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 +++NYLMA+AR+R E A+AWIDISTG+F+++ +N RL++DI RIDPRE+I +E + Sbjct: 121 SETNYLMALARVRGSGDELALAWIDISTGVFRLAETNPTRLLADIFRIDPREVIVAETLM 180 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 + K F+ LG V V QP+V FD + +E RI Y+N+ T+D FG FS+ E AA+AAI Sbjct: 181 QDPDLKPAFDVLGRVVVPQPSVLFDSASAEGRITRYFNVKTLDGFGGFSRPEMAAASAAI 240 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 +Y++KTQM +P +G PER+ STLFID+A R+NLE+++TLSG ++ SLL TID ++TG Sbjct: 241 AYVEKTQMSERPPLGLPERQSSSSTLFIDAATRANLELVKTLSGQKQGSLLNTIDRTVTG 300 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 G RL AER+ SPLT+ I R D++ + + + L ++ +LK +PD+PR+LSRL + Sbjct: 301 GGARLMAERLMSPLTEVVAIAQRQDAVAYLLTDGFLCERLRDLLKRAPDMPRALSRLALD 360 Query: 385 RGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLP 444 RG P+D+A IR G+ + ++ L LP+EL A+ L+ L SLE L+S L++DLP Sbjct: 361 RGGPRDLAAIRYGLSTSGDVAGLLRGAVLPDELASALTDLEMLSPSLENLLASQLAEDLP 420 Query: 445 TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIE 504 KRDGGFLR+GAD LDE R+LRDQS+R+IA LQL+YAEET +K+LKIKHNN LGYFIE Sbjct: 421 LLKRDGGFLREGADEGLDEVRALRDQSRRVIAGLQLQYAEETGVKSLKIKHNNVLGYFIE 480 Query: 505 VTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEI 564 VT+ +A L + E+K RFIHRQ+M+N RFTT EL DLE+RI NA AL IEL +FE Sbjct: 481 VTAGNAGPLIEG-EAKARFIHRQSMANAMRFTTTELADLESRIANAAGQALEIELAAFER 539 Query: 565 LSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEK 624 + A++ ++E++ A++ +A+ID++ LA+LA+EQ YCRP++D+S F + GRHP+VE+ Sbjct: 540 MRQAVVTEAEAIKKAARALAVIDVAAGLAVLAEEQGYCRPLVDDSRMFSIVAGRHPVVEQ 599 Query: 625 TLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684 L++Q++ PFIAN+CDLS D+ G +W+LTGPNMGGKSTFLRQNALI I+AQMGS+VP Sbjct: 600 ALRKQAASPFIANNCDLSPVGDQKHGAIWMLTGPNMGGKSTFLRQNALIAILAQMGSFVP 659 Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744 A AHIGIVD+LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA +S VILDEIGRGTAT Sbjct: 660 AGSAHIGIVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQAGERSLVILDEIGRGTAT 719 Query: 745 LDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHK 804 DGLSIAWAT+E+LHE NRCR L ATHFHELT LS+ L R N T++V + + +IFLH+ Sbjct: 720 FDGLSIAWATVEHLHEVNRCRSLFATHFHELTALSEKLVRLSNVTMKVKEWHGDVIFLHE 779 Query: 805 VIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DMRLYYPEIQT 859 V G AD SYGIQV +LAGLP V+ RA +L E N D+ L+ Q Sbjct: 780 VGAGAADRSYGIQVARLAGLPGMVVERARAVLSQLEDADRKNPASQLIDDLPLFQVS-QR 838 Query: 860 KESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +ES+ E ++ LNLD+++P A+ LY +K Sbjct: 839 RESRTGTGAQVSAVEEALRSLNLDDLTPRQAMDALYDLK 877 >gi|222084680|ref|YP_002543209.1| DNA mismatch repair protein MutS [Agrobacterium radiobacter K84] gi|221722128|gb|ACM25284.1| DNA mismatch repair protein MutS [Agrobacterium radiobacter K84] Length = 885 Score = 1040 bits (2689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 501/880 (56%), Positives = 665/880 (75%), Gaps = 11/880 (1%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QYIEIK+ NP SL+FYRMGDFYELFF+DA+ ASR LGITLTKRG+H+G+DIPMCGVP Sbjct: 1 MMEQYIEIKANNPGSLLFYRMGDFYELFFEDAVDASRALGITLTKRGQHMGQDIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 VH A+ Y+QKLI +G R+A+CEQIE P EAKKRG KS+VRR+VVRLVTPGT+TE++LLSP Sbjct: 61 VHAADDYLQKLISLGFRVAVCEQIEDPAEAKKRGGKSVVRRDVVRLVTPGTITEEKLLSP 120 Query: 148 TDSNYLMAVARIR----TEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 ++SNYLMA+ RIR + A+AWIDISTG+F+++ + RL++DI+RIDPRE+I + Sbjct: 121 SESNYLMALTRIRGGTEPQLALAWIDISTGVFRLAETEASRLLADILRIDPRELILPDTM 180 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + K +F+ LG AV QP V FD + +E RI Y+ ++T+D FG+F++ E AA+AA Sbjct: 181 FHDPDLKPVFDVLGRTAVPQPGVLFDSASAEGRITRYFGVSTLDGFGTFTRAELAAASAA 240 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 ++Y++KTQ+ +P +G PERE STLFID A R+NLE++RTLSG R SLLK ID ++T Sbjct: 241 VAYVEKTQIAERPPLGMPERESGASTLFIDPATRANLELVRTLSGDRNGSLLKAIDRTVT 300 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G G RL AER+ SPLTD ++N RLDSI F + P L + ++ LK PD+PR+LSRL + Sbjct: 301 GGGARLLAERLMSPLTDPIRVNERLDSIGFLTEEPSLCSDLRTALKHVPDMPRALSRLAL 360 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 RG P+D+ IR G+ + +I + LPEEL A+ L+ LP LE L+ ML+D+L Sbjct: 361 DRGGPRDLWAIRQGLGAAADIARMLGSALLPEELEAALAGLRSLPADLEALLAEMLADEL 420 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P KRDGGFLR+GA+A LDE R+LRDQS+R+IA LQL+YAEET IK+LKIKHNN LGYFI Sbjct: 421 PLLKRDGGFLREGANAELDEVRALRDQSRRVIAGLQLQYAEETGIKSLKIKHNNVLGYFI 480 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EVT+ +A + E+K RFIHRQTM+N RFTT EL DLE+RI NA + AL IEL +F+ Sbjct: 481 EVTAGNAGPMTDSAEAKARFIHRQTMANAMRFTTTELADLESRIANAADKALTIELAAFD 540 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 + A++ ++E++ ++ +++ID++ LA+LA+EQ YCRP++D S F ++ GRHP+VE Sbjct: 541 RMVAAVVAEAEAIKAGARALSVIDVAAGLALLAEEQAYCRPVVDASRMFAIEGGRHPVVE 600 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 + L++Q+ PF+AN+CDLS +D G +WLLTGPNMGGKSTFLRQNALI I+AQMGS+V Sbjct: 601 QALRRQAGGPFVANNCDLSPTSDGKDGAIWLLTGPNMGGKSTFLRQNALIAILAQMGSFV 660 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA+ A+IGIVD+LFSRVG++D+LA GRSTFMVEM+ETA+ILNQAT++S VILDEIGRGTA Sbjct: 661 PATSAYIGIVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQATDRSLVILDEIGRGTA 720 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DGLSIAWA++E+LHE NRCRGL ATHFHELT LS+ L+R NAT++V + + +IFLH Sbjct: 721 TFDGLSIAWASVEHLHEANRCRGLFATHFHELTVLSEKLERLSNATMRVKEWDGDVIFLH 780 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DMRLYYPEIQ 858 +V PG AD SYGIQV +LAGLP +V++RA D+L E N D+ L+ ++ Sbjct: 781 EVGPGAADRSYGIQVARLAGLPVSVVARARDVLTRLEDADRKNPASQLIDDLPLFQVAVR 840 Query: 859 TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +E+ + E +K L+LD+++P AL LY +K Sbjct: 841 REEAGGR--RGPSKVEEALKALDLDDLTPRAALDALYELK 878 >gi|150395258|ref|YP_001325725.1| DNA mismatch repair protein MutS [Sinorhizobium medicae WSM419] gi|166232140|sp|A6U5G0|MUTS_SINMW RecName: Full=DNA mismatch repair protein mutS gi|150026773|gb|ABR58890.1| DNA mismatch repair protein MutS [Sinorhizobium medicae WSM419] Length = 915 Score = 1035 bits (2677), Expect = 0.0, Method: Compositional matrix adjust. Identities = 501/891 (56%), Positives = 666/891 (74%), Gaps = 15/891 (1%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 EE+ ++TPMM Q+IEIK+ N DSL+FYRMGDFYELFF DA+ ASR LGITLTKRG+H+G Sbjct: 23 EESRSTATPMMEQFIEIKANNRDSLLFYRMGDFYELFFQDAVEASRALGITLTKRGQHMG 82 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 ++IPMCGVPVH A+ Y+QKLI +G+R+A+CEQ+E P EAKKRG KS+VRR+VVRLVTPGT Sbjct: 83 QEIPMCGVPVHAADDYLQKLIALGYRVAVCEQVEDPAEAKKRGGKSVVRRDVVRLVTPGT 142 Query: 139 LTEDQLLSPTDSNYLMAVARIRT----EWAIAWIDISTGIFKISTSNHDRLISDIMRIDP 194 +TED+LLSP++SNYLMA+ARIR+ +A+AWIDISTGIF+++ + RL++DI+RI+P Sbjct: 143 ITEDKLLSPSESNYLMALARIRSGSEPAYALAWIDISTGIFRLAETAESRLLADILRIEP 202 Query: 195 REIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 RE+I + + + +F+ LG VAV QP + FD + +E RI+ YY + T+D FGSFS+ Sbjct: 203 RELILPDTVFHDPDLRPVFDVLGRVAVPQPAILFDSATAEGRISRYYGVGTLDGFGSFSR 262 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSL 314 E AA+AA+SY++KTQ+ +P +G PERE STLFID A R+NLE+ +TLSGSR+ SL Sbjct: 263 AELAAASAAVSYVEKTQLQERPALGIPERESAASTLFIDPATRANLELAKTLSGSRDGSL 322 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 LK++D ++T G RL AER+ SPLTD +IN RLDSI P + L+ +PD+ Sbjct: 323 LKSLDRTVTSGGARLLAERLMSPLTDPERINRRLDSIEMLADQPRFTADARDALRRAPDM 382 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 PR+LSRL +GRG P+D+ I+ G+R+ + I L +L EL A + + LP+ L Sbjct: 383 PRALSRLALGRGGPRDLGAIQAGMRAAVAIAALLSGAELSVELAEARDAIAGLPRDLLAR 442 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L + L+++LP KRDGGF+R+GA+A LDE R+LRDQS+R++A LQL+Y EET IK+LKIK Sbjct: 443 LDATLAEELPLLKRDGGFVREGANAELDEMRALRDQSRRVVAGLQLQYCEETGIKSLKIK 502 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 HNN LGYFIEVT+ +A + + RFIHRQTM+N RFTT EL +LE +I NA + Sbjct: 503 HNNVLGYFIEVTAGNAGAMIDTDAGRARFIHRQTMANAMRFTTTELAELETKIANAADRV 562 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L IELE+FE+++ ++ ++E++ A+ +A ID+S LA+LA+EQNY RP +D S F + Sbjct: 563 LAIELETFEVMTREVVAEAEAIKAAALALATIDVSAGLAVLAEEQNYTRPAVDRSRMFAI 622 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 GRHP+VE+ L++Q++ PF+AN CDLS P + G +WLLTGPNMGGKSTFLRQNALI Sbjct: 623 DGGRHPVVEQALRRQAANPFVANGCDLSPPGGEEGGAIWLLTGPNMGGKSTFLRQNALIA 682 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMAQMGS+VPAS AHIG+VD+LFSRVG++D+LA GRSTFMVEM+ETA+ILNQAT++S VI Sbjct: 683 IMAQMGSFVPASAAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQATDRSLVI 742 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDEIGRGTAT DGLSIAWA +E+LHE NRCRGL ATHFHELT LS+ L R NAT++V + Sbjct: 743 LDEIGRGTATFDGLSIAWAAVEHLHEVNRCRGLFATHFHELTVLSEKLGRLSNATMRVKE 802 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----D 849 + +IFLH+V PG AD SYGIQV +LAGLP +V++RA D+L E N D Sbjct: 803 WDGDVIFLHEVGPGAADRSYGIQVARLAGLPASVVARARDVLAKLEDADRKNPASQLIDD 862 Query: 850 MRLYYPEIQTKESKN--NLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L+ ++ +E+ LS+ + E +K LN D+M+P AL LYA+K Sbjct: 863 LPLFQVAVRREEAARAPGLSRAE----EALKALNPDDMTPREALDALYALK 909 >gi|227820618|ref|YP_002824588.1| DNA mismatch repair protein MutS [Sinorhizobium fredii NGR234] gi|227339617|gb|ACP23835.1| DNA mismatch repair protein MutS [Sinorhizobium fredii NGR234] Length = 933 Score = 1033 bits (2670), Expect = 0.0, Method: Compositional matrix adjust. Identities = 503/889 (56%), Positives = 661/889 (74%), Gaps = 11/889 (1%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 EE+ ++TPMM Q+IEIK+ NPDSL+FYRMGDFYELFF DA+ ASR LGITLTKRG+HLG Sbjct: 41 EESRSTATPMMEQFIEIKANNPDSLLFYRMGDFYELFFQDAVEASRALGITLTKRGQHLG 100 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 +DIPMCGVPVH A+ Y+QKLI +G R+A+CEQ+E P EAKKRG+KS+VRR+VVRLVTPGT Sbjct: 101 QDIPMCGVPVHAADDYLQKLIALGFRVAVCEQVEDPAEAKKRGSKSVVRRDVVRLVTPGT 160 Query: 139 LTEDQLLSPTDSNYLMAVARIRT----EWAIAWIDISTGIFKISTSNHDRLISDIMRIDP 194 +TED+LLSP++SNYLMA+ARIR+ +A+AWIDISTGIF+++ + RL++DI+R++P Sbjct: 161 ITEDKLLSPSESNYLMALARIRSGSEPAYALAWIDISTGIFRLAETAESRLLADILRVEP 220 Query: 195 REIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 RE+I + E + +F+ LG VAV QP V FD + +E RIA YY + T+D FG+FS+ Sbjct: 221 RELILPDTVFHDPELRPVFDVLGRVAVPQPAVLFDSATAEGRIARYYGVKTLDGFGTFSR 280 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSL 314 E AA+AAISY++KTQ+ +P +G PERE STLFID A R+NLE+++TLSG+RE +L Sbjct: 281 AELAAASAAISYVEKTQIQERPALGIPERESAASTLFIDPATRANLELVKTLSGAREGTL 340 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L+ +D ++T G RL AER+ SPLTD +IN RLDSI + P ++ L+ +PD+ Sbjct: 341 LRALDRTVTSGGARLLAERLMSPLTDPDRINQRLDSIEVLLDQPSFAIDVRDTLRRAPDM 400 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 PR+LSRL +GRG P+D+ I+ G+R+ L L EEL A + LP +L Sbjct: 401 PRALSRLALGRGGPRDLGAIQAGLRAAAATATLLSGARLSEELTEAHAAIAALPAALLAR 460 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L SML++DLP KRDGGFLR+ A LDE R+LRDQS+R+IA LQL+Y EET IK+LKIK Sbjct: 461 LDSMLAEDLPLLKRDGGFLREAASGELDEMRALRDQSRRVIAGLQLQYCEETGIKSLKIK 520 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 HNN LGYFIEVT+ +A + + RFIHRQTM++ RFTT EL +LE +I NA + A Sbjct: 521 HNNVLGYFIEVTAGNAGAMTDTDAGRARFIHRQTMASAMRFTTTELAELETKIANAADRA 580 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L IELE+FE ++ ++ +E++ AS +A++D+S LA+LA+EQNY RP +D S F++ Sbjct: 581 LAIELEAFEAMAREVVADAEAIKAASLALAMLDVSAGLAVLAEEQNYARPAVDRSRMFLI 640 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 GRHP+VE+ L++Q+ PF+AN CDLS P+ +G +WLLTGPNMGGKSTFLRQNALI Sbjct: 641 DGGRHPVVEQALRRQAGNPFVANGCDLSPPDGPEAGAIWLLTGPNMGGKSTFLRQNALIA 700 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMAQMGS+VPA+ AHIGIVD+LFSRVG++D+LA GRSTFMVEM+ETA+ILNQAT+ S VI Sbjct: 701 IMAQMGSFVPANAAHIGIVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQATDHSLVI 760 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDEIGRGTAT DGLSIAWA +E+LHE NRCRGL ATHFHELT LS+ L R NAT++V + Sbjct: 761 LDEIGRGTATFDGLSIAWAAVEHLHEVNRCRGLFATHFHELTVLSEKLGRLSNATMRVKE 820 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----D 849 + +IFLH+V PG AD SYGIQV +LAGLP +V++RA D+L E N D Sbjct: 821 WDGDVIFLHEVGPGAADRSYGIQVARLAGLPASVVARARDVLANLEDADRKNPASQLIDD 880 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L+ ++ +E + E ++ +N D+M+P AL+ LYA+K Sbjct: 881 LPLFQVAVRREEVAR--ASGPSRAEEALRAINPDDMTPREALEALYALK 927 >gi|15964148|ref|NP_384501.1| DNA mismatch repair protein [Sinorhizobium meliloti 1021] gi|307301293|ref|ZP_07581055.1| DNA mismatch repair protein MutS [Sinorhizobium meliloti BL225C] gi|307317964|ref|ZP_07597401.1| DNA mismatch repair protein MutS [Sinorhizobium meliloti AK83] gi|8473172|sp|P56883|MUTS_RHIME RecName: Full=DNA mismatch repair protein mutS gi|15073324|emb|CAC41832.1| Probable DNA mismatch repair protein [Sinorhizobium meliloti 1021] gi|306896366|gb|EFN27115.1| DNA mismatch repair protein MutS [Sinorhizobium meliloti AK83] gi|306903749|gb|EFN34336.1| DNA mismatch repair protein MutS [Sinorhizobium meliloti BL225C] Length = 916 Score = 1031 bits (2667), Expect = 0.0, Method: Compositional matrix adjust. Identities = 504/889 (56%), Positives = 663/889 (74%), Gaps = 10/889 (1%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 EE+ ++TPMM Q+IEIK+ NPDSL+FYRMGDFYELFF DA+ ASR LGITLTKRG+H+G Sbjct: 23 EESRSTATPMMEQFIEIKANNPDSLLFYRMGDFYELFFQDAVEASRALGITLTKRGQHMG 82 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 ++IPMCGVPVH A+ Y+QKLI G+R+A+CEQ+E P EAKKRG+KS+VRR+VVRLVTPGT Sbjct: 83 QEIPMCGVPVHAADDYLQKLIASGYRVAVCEQVEDPAEAKKRGSKSVVRRDVVRLVTPGT 142 Query: 139 LTEDQLLSPTDSNYLMAVARIRT----EWAIAWIDISTGIFKISTSNHDRLISDIMRIDP 194 +TED+LLSP++SNYLMA+ARIR+ +A+AWIDISTGIF+++ + RL++DI+RI+P Sbjct: 143 ITEDKLLSPSESNYLMALARIRSGSEPAYALAWIDISTGIFRLAETAESRLLADILRIEP 202 Query: 195 REIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 RE+I + + + +F+ LG VAV QP V FD + +E RI+ YY + T+D FGSFS+ Sbjct: 203 RELILPDTVFHDPDLRPVFDVLGRVAVPQPAVLFDSATAEGRISRYYGVGTLDGFGSFSR 262 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSL 314 E AA+AA+SY++KTQ+ +P +G PERE STLFID A R+NLE+ +TLSGSR+ SL Sbjct: 263 AELAAASAAVSYVEKTQLQERPALGIPERESAASTLFIDPATRANLELAKTLSGSRDGSL 322 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 LK++D ++T G RL AER+ SPLTD +IN RLDSI P ++ L+ +PD+ Sbjct: 323 LKSLDRTMTSGGARLLAERLMSPLTDPERINQRLDSIEVLADQPRFTTDVRDALRRAPDM 382 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 PR+LSRL +GRG P+D+ I+ G+R+ I L +L EL A + + LP L Sbjct: 383 PRALSRLALGRGGPRDLGAIQAGMRAAAAISALLSGAELSAELTEARDAIAALPGELLAR 442 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L + L+++LP KRDGGF+R+GA A LDE R+LRDQS+R+IA LQL+Y EET IK+LKIK Sbjct: 443 LDATLAEELPLLKRDGGFVREGASAELDEMRALRDQSRRVIAGLQLQYCEETGIKSLKIK 502 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 HNN LGYFIEVT+ +A + + RFIHRQTM+N RFTT EL +LE +I NA + A Sbjct: 503 HNNVLGYFIEVTAGNAGSMTDTDAGRARFIHRQTMANAMRFTTTELAELETKIANAADRA 562 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L IELE+FE + ++ ++E++ A+ +A ID+S LA+LA+EQNY RP +D S F + Sbjct: 563 LAIELETFEAMVREVVAEAEAIKAAALALATIDVSAGLAVLAEEQNYTRPTVDRSRMFAI 622 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 GRHP+VE+ L++Q++ PF+AN CDLS PN + G +WLLTGPNMGGKSTFLRQNALI Sbjct: 623 DGGRHPVVEQALRRQAANPFVANGCDLSPPNGEQGGAIWLLTGPNMGGKSTFLRQNALIA 682 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMAQ GS+VPA+ AHIG+VD+LFSRVG++D+LA GRSTFMVEM+ETA+ILNQAT++S VI Sbjct: 683 IMAQTGSFVPAAAAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQATDRSLVI 742 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDEIGRGTAT DGLSIAWA +E+LHE NRCRGL ATHFHELT LS+ L R NAT++V + Sbjct: 743 LDEIGRGTATFDGLSIAWAAVEHLHEVNRCRGLFATHFHELTVLSEKLVRLSNATMRVKE 802 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----D 849 + +IFLH+V PG AD SYGIQV +LAGLP +V++RA D+L E N D Sbjct: 803 WDGDVIFLHEVGPGAADRSYGIQVARLAGLPASVVARARDVLAKLEDADRKNPASQLIDD 862 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L+ ++ +E+ S K+ E +K LN D+M+P AL LYA+K Sbjct: 863 LPLFQVAVRREEAARASSGPSKV-EEALKALNPDDMTPREALDALYALK 910 >gi|319407965|emb|CBI81619.1| DNA mismatch repair protein MutS [Bartonella schoenbuchensis R1] Length = 908 Score = 1025 bits (2650), Expect = 0.0, Method: Compositional matrix adjust. Identities = 498/882 (56%), Positives = 648/882 (73%), Gaps = 11/882 (1%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QYIEIK++N DSL+FYRMGDFYELFF+DA+ AS+ LGITLT RGKHLG+DIPMCG Sbjct: 24 TPMMEQYIEIKAVNSDSLLFYRMGDFYELFFNDAIEASQALGITLTTRGKHLGEDIPMCG 83 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH+A+ Y+QKLI G+R+A+CEQ E P EAKKRG+KS+V+R+VVRLVTPGT+TE++LL Sbjct: 84 VPVHSADDYLQKLIARGYRVAVCEQTEDPAEAKKRGSKSVVQRDVVRLVTPGTITEEKLL 143 Query: 146 SPTDSNYLMAVARIRT----EWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 PT +NYLM +AR RT E+A+AWIDISTGIF+++ S+H++L++DIM +DP+E+I ++ Sbjct: 144 DPTRANYLMTLARTRTNDRKEFALAWIDISTGIFRVTQSHHEKLLTDIMCVDPQEVIVAD 203 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 KSLF LG + QP FD +E I +Y+ ++T++ +S E +A A Sbjct: 204 SFFHDPSQKSLFNALGRIVSPQPLSLFDTITAEHDICNYFKLSTLEGIADYSPAELSAIA 263 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 AAI YI+KTQ+ ++P + PER++ +TLFID+A R NLE++RT SG R+ SLLKTID + Sbjct: 264 AAIRYIEKTQITHRPPLMRPERQNESATLFIDAATRLNLELIRTTSGQRDGSLLKTIDRT 323 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +TG G RL AER+ SPLT I+ RLDSI FF+ N L I+ ILK D+PR++SRL Sbjct: 324 VTGGGSRLLAERLISPLTTPEIIDKRLDSIAFFLSNTSLAKAIRLILKGGADMPRAVSRL 383 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAV-EKLKKLPQSLEKTLSSMLS 440 +GRG P+DIA I+ G IN LN L N+LP + G V E LP +L L L+ Sbjct: 384 ALGRGGPRDIATIQRGFEI-INELNQLLSNELPPQEIGDVREVFSHLPIALHIQLEKALA 442 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 DDLP KRDGGF+R LDETRSLRD+S+RIIA LQ +YA+ET IK LKIKHNN LG Sbjct: 443 DDLPLLKRDGGFIRSNYHQELDETRSLRDESRRIIAELQAQYAQETDIKTLKIKHNNILG 502 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 YFIEVTS AS L + +SK+RFIHRQTM++ RFTT EL++LE+RI +A N A+ +ELE Sbjct: 503 YFIEVTSLQASALTDNPQSKERFIHRQTMASAMRFTTTELVELESRIAHAANHAITLELE 562 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F+ L N I + + AS+ +A++D+S+ALA LA+EQ YCRP ID+S F + GRHP Sbjct: 563 IFDTLVNEITAHVDFIRKASEALAVLDVSVALAHLAEEQGYCRPKIDDSLTFQITGGRHP 622 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE+ L++Q+++ F+ANDCDLS D +WLLTGPNMGGKSTFLRQNALI IMAQMG Sbjct: 623 VVEQALRKQATESFVANDCDLSAQQDHQYAAIWLLTGPNMGGKSTFLRQNALIAIMAQMG 682 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA+ AHIG+VD+LFSRVG++D+LA GRSTFM+EM+ETA+ILN A+N+S VILDEIGR Sbjct: 683 SFVPAASAHIGVVDRLFSRVGASDDLARGRSTFMMEMVETATILNHASNRSLVILDEIGR 742 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GT+T DGLSIAWA +EYLHE N CR +LATHFHE+T L+K L R HN T++V + N ++ Sbjct: 743 GTSTFDGLSIAWAAVEYLHEVNHCRAILATHFHEMTALTKKLNRLHNVTMKVKNWNGDVV 802 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY--YPEIQ 858 FLH+V G AD SYG+QV KLAGLP VI+RA D+L+ EK N K +L P Sbjct: 803 FLHEVTKGAADRSYGVQVAKLAGLPTAVIARATDVLQQLEK-GEMNGKGNKLIDNLPLFS 861 Query: 859 TKESKNNLSKNDKLFV--EKIKCLNLDEMSPLTALKTLYAVK 898 + + + DK + E + ++ DE+SP AL+ LY +K Sbjct: 862 PQTTSPTTEETDKYYAIKEALNNIHPDELSPKAALEELYRLK 903 >gi|319898289|ref|YP_004158382.1| DNA mismatch repair protein MutS [Bartonella clarridgeiae 73] gi|319402253|emb|CBI75786.1| DNA mismatch repair protein MutS [Bartonella clarridgeiae 73] Length = 911 Score = 1018 bits (2632), Expect = 0.0, Method: Compositional matrix adjust. Identities = 495/882 (56%), Positives = 652/882 (73%), Gaps = 11/882 (1%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QYIEIK++N DSL+FYRMGDFYELFF+DA+ A++ LGITLT RGKHLGKDIPMCG Sbjct: 27 TPMMEQYIEIKALNSDSLLFYRMGDFYELFFNDAIEAAQALGITLTTRGKHLGKDIPMCG 86 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH+A+ Y+QKLI G+R+A+CEQIE P EAKKRG+KS+V+R+VVRL+TPGT+TE++LL Sbjct: 87 VPVHSADDYLQKLIACGYRVAVCEQIEDPAEAKKRGSKSVVQRDVVRLITPGTITEEKLL 146 Query: 146 SPTDSNYLMAVARI----RTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 PT +NYLM + R R E+A++WIDISTGIF+++ S H+ L++DIMR+DP+E+I ++ Sbjct: 147 DPTRANYLMTLTRTIISNREEYALSWIDISTGIFRVTESRHENLLTDIMRVDPQEVIVAD 206 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 K+LF LG++ QP FD + +E I Y+ ++T++ +S+ E +A A Sbjct: 207 SLFHDKSQKALFNVLGHIISPQPENLFDTTTAERDICHYFKLSTLEGIADYSRSELSAIA 266 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 AAI YI+KTQ+ ++P + PER++ +TLFID+A R +LE++RT SG R+ SLLK ID + Sbjct: 267 AAIRYIEKTQITHRPPLMRPERQNESTTLFIDTATRFSLELIRTTSGQRDGSLLKAIDRT 326 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +TG G RL +R+ SPLT+ T I+ RLDSI+FF++NP L I+ ILK PD+PR++SRL Sbjct: 327 VTGGGSRLLVDRLISPLTNPTAIDKRLDSIDFFLRNPPLAEAIKLILKGGPDMPRAVSRL 386 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDL-PEELRGAVEKLKKLPQSLEKTLSSMLS 440 +GRG P+D+ I+ G IN +N L N+L P+E+ E LP +L L L+ Sbjct: 387 ALGRGGPRDMGTIQRGFEI-INEINQILNNELLPQEINDVREVFSHLPTTLHFHLEQALA 445 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 DDLP FKRDGGF+R LDE R+LRD+S+ +IA LQ +YA+ET IK LKIKHNN LG Sbjct: 446 DDLPLFKRDGGFIRLNYHQELDEMRNLRDESRCVIARLQAQYAQETDIKTLKIKHNNILG 505 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 YFIEVT+ AS L ++K RFIHRQTM+N RFTT EL +LE+RI +A N AL +ELE Sbjct: 506 YFIEVTNLQASALTNTPQAKARFIHRQTMANAMRFTTTELTELESRIAHAANHALTLELE 565 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F+ L I EQ + + A++ +AI+D+S+ALA LA+EQ YCRP IDNS F + GRHP Sbjct: 566 IFDTLVYEITEQIDFIRQAAEALAILDVSVALAHLAEEQGYCRPKIDNSLAFHITAGRHP 625 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE+ L++Q+++PF+ANDCDLS N + +WLLTGPNMGGKSTFLRQNALI IMAQMG Sbjct: 626 VVEQALRKQAAEPFVANDCDLSARNQHPNADIWLLTGPNMGGKSTFLRQNALIAIMAQMG 685 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA+ AHIGIVD+LFSRVG++D+LA GRSTFM+EM+ETA+ILN A++ S VILDEIGR Sbjct: 686 SFVPATSAHIGIVDRLFSRVGASDDLARGRSTFMMEMVETATILNHASSHSLVILDEIGR 745 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GT+T DGLSIAWAT+E+LHE NRCR +LATHFHE+T L+K L R HN T++V + N +I Sbjct: 746 GTSTFDGLSIAWATVEHLHEINRCRAILATHFHEMTALTKKLNRLHNVTIKVKNWNSDVI 805 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY--YPEIQ 858 FLH+V G AD SYG+QV KLAGLP TVISRA D+L+ E+ + K +L P Sbjct: 806 FLHEVTKGTADRSYGVQVAKLAGLPATVISRATDVLRQLEQ-GEMSGKGHKLIDNLPLFP 864 Query: 859 TKESKNNLSKNDKLFVEK--IKCLNLDEMSPLTALKTLYAVK 898 K + KN+K K K ++ DE+SP AL+ LY +K Sbjct: 865 LKLTSFTNEKNEKCCAIKDAFKNIDPDELSPKAALEELYRLK 906 >gi|225851681|ref|YP_002731914.1| DNA mismatch repair protein MutS [Brucella melitensis ATCC 23457] gi|256264808|ref|ZP_05467340.1| DNA mismatch repair protein mutS [Brucella melitensis bv. 2 str. 63/9] gi|225640046|gb|ACN99959.1| DNA mismatch repair protein MutS [Brucella melitensis ATCC 23457] gi|263095218|gb|EEZ18887.1| DNA mismatch repair protein mutS [Brucella melitensis bv. 2 str. 63/9] gi|326408168|gb|ADZ65233.1| DNA mismatch repair protein MutS [Brucella melitensis M28] gi|326537881|gb|ADZ86096.1| DNA mismatch repair protein MutS [Brucella melitensis M5-90] Length = 910 Score = 1016 bits (2628), Expect = 0.0, Method: Compositional matrix adjust. Identities = 472/880 (53%), Positives = 635/880 (72%), Gaps = 7/880 (0%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QYIEIK+ N DSL+FYRMGDFYELFFDDA+ AS LGITLTKRGKHLG+DIPMCG Sbjct: 25 TPMMEQYIEIKAANVDSLLFYRMGDFYELFFDDAVAASAALGITLTKRGKHLGEDIPMCG 84 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH A+ Y+QKLI G+R+A+CEQ+E P EAKKRG+KS+V+R+V+RLVTPGTLTE++LL Sbjct: 85 VPVHAADDYLQKLIAKGYRVAVCEQVEDPAEAKKRGSKSVVKRDVIRLVTPGTLTEEKLL 144 Query: 146 SPTDSNYLMAVARIRTE--WAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 P +N+LMA+ R R + A+AWIDISTG F+++ + DRL +DIMR+DPRE++ ++ Sbjct: 145 DPAQANFLMAMGRTRGDGALALAWIDISTGTFRVAETTPDRLFADIMRVDPRELVVADSA 204 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 E + +F+ +G QP FD + +++RI Y+N+ T+D FG FS+ E +A + A Sbjct: 205 FHDEELRPVFDLIGKAVTPQPATLFDSAAAQTRIQHYFNVATLDGFGQFSRPELSAISGA 264 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 I+YI+KTQ+ +P + PERE TLFID A R++LE+ RT+SG+R+ SLLK ID ++T Sbjct: 265 IAYIEKTQISERPPLMRPEREHEGGTLFIDPATRASLELARTMSGNRDGSLLKAIDRTVT 324 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G G RL AER+ +PLT +I RLDS+++ + L ++ LK PD+PR+LSRL + Sbjct: 325 GGGARLLAERLTAPLTSPKEIALRLDSVSWCLSEQTLCEALRLELKGVPDMPRALSRLAV 384 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 GRG P+D+ + G + I +L LP+EL A E ++K+P S L L+D+L Sbjct: 385 GRGGPRDLGALACGFEAAGGIASLLDGALLPDELAAAREAIEKMPASFAAHLDRALADEL 444 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P KRDGGF+R+G ++ LDE R+LRDQS+R+IA LQ Y EET IK+LKIKHNN LGYFI Sbjct: 445 PLLKRDGGFVREGYNSELDEMRALRDQSRRVIAGLQADYIEETGIKSLKIKHNNVLGYFI 504 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EVT++++ + E+K RFIHRQTM+N RFTT EL +LE++I NA + AL IEL FE Sbjct: 505 EVTANNSGAMTDTDEAKSRFIHRQTMANAMRFTTTELAELESKIANAADRALSIELAIFE 564 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L+ + ++S+ A+ +++ D+S ALA+LA+EQ YCRP +D+S +F + GRHP+VE Sbjct: 565 ELTAEAVAHADSIRAAASALSVFDVSTALAVLAEEQGYCRPHVDDSLSFNIVAGRHPVVE 624 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 + L++Q++ PF+ANDCDLS D G +WLLTGPNMGGKSTFLRQNALI I+AQMGS+V Sbjct: 625 QALRRQAANPFVANDCDLSPQRDGGDGAIWLLTGPNMGGKSTFLRQNALIAILAQMGSFV 684 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA AHIG+VD+LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA S VILDEIGRGTA Sbjct: 685 PAGSAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQAGEHSLVILDEIGRGTA 744 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DGLSIAWA +EYLHE NRCR L ATHFHE+T LS+ L+R N T++V + + +IFLH Sbjct: 745 TFDGLSIAWAAVEYLHEKNRCRALFATHFHEMTALSEKLERLSNVTMRVKEWDNDVIFLH 804 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DMRLYYPEIQ 858 +V G AD SYG+QV +LAGLP V++RA D+L E + D+ L+ +Q Sbjct: 805 EVAKGAADRSYGVQVARLAGLPEAVVNRARDVLHQLEAGETSGKADRLIDDLPLFSVMLQ 864 Query: 859 TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ K + D + ++ DE++P AL +Y +K Sbjct: 865 QEKPKPQIQAKDSELANAVAAISPDELTPREALDLIYKLK 904 >gi|254718363|ref|ZP_05180174.1| DNA mismatch repair protein MutS [Brucella sp. 83/13] gi|265983324|ref|ZP_06096059.1| DNA mismatch repair protein mutS [Brucella sp. 83/13] gi|264661916|gb|EEZ32177.1| DNA mismatch repair protein mutS [Brucella sp. 83/13] Length = 910 Score = 1016 bits (2626), Expect = 0.0, Method: Compositional matrix adjust. Identities = 471/880 (53%), Positives = 635/880 (72%), Gaps = 7/880 (0%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QYIEIK+ N DSL+FYRMGDFYELFFDDA+ AS LGITLTKRGKHLG+DIPMCG Sbjct: 25 TPMMEQYIEIKAANVDSLLFYRMGDFYELFFDDAVAASAALGITLTKRGKHLGEDIPMCG 84 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH A+ Y+QKLI G+R+A+CEQ+E P EAKKRG+KS+V+R+V+RLVTPGTLTE++LL Sbjct: 85 VPVHAADDYLQKLIAKGYRVAVCEQVEDPAEAKKRGSKSVVKRDVIRLVTPGTLTEEKLL 144 Query: 146 SPTDSNYLMAVARIRTE--WAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 P +N+LMA+ R R + A+AWIDISTG F+++ + DRL +DIMR+DPRE++ ++ Sbjct: 145 DPAQANFLMAMGRTRGDGALALAWIDISTGTFRVAETTPDRLFADIMRVDPRELVVADSA 204 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 E + +F+ +G QP FD + +++RI Y+N+ T+D FG FS+ E +A + A Sbjct: 205 FHDEELRPVFDLIGKAVTPQPATLFDSAAAQTRIQHYFNVATLDGFGQFSRPELSAISGA 264 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 I+YI+KTQ+ +P + PERE TLFID A R++LE+ RT+SG+R+ SLLK ID ++T Sbjct: 265 IAYIEKTQISERPPLMRPEREHEGGTLFIDPATRASLELARTMSGNRDGSLLKAIDRTVT 324 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G G RL AER+ +PLT +I RLDS+++ + L ++ LK PD+PR+LSRL + Sbjct: 325 GGGARLLAERLTAPLTSPKEIALRLDSVSWCLSEQTLCEALRLELKGVPDMPRALSRLAV 384 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 GRG P+D+ + G + I +L LP+EL A E ++K+P L L+D+L Sbjct: 385 GRGGPRDLGALACGFEAAGGIASLLDGALLPDELAAAREAIEKMPAGFAAHLDRALADEL 444 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P KRDGGF+R+G ++ LDE R+LRDQS+R+IA LQ Y EET IK+LKIKHNN LGYFI Sbjct: 445 PLLKRDGGFVREGYNSELDEMRALRDQSRRVIAGLQADYIEETGIKSLKIKHNNVLGYFI 504 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EVT++++ + E+K RFIHRQTM+N RFTT EL +LE++I NA + AL IEL FE Sbjct: 505 EVTANNSGAMTDTDEAKSRFIHRQTMANAMRFTTTELAELESKIANAADRALSIELAIFE 564 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L+ + ++S+ A+ +++ D+S ALA+LA+EQ YCRP +D+S +F + GRHP+VE Sbjct: 565 ELTAEAVAHADSIRAAASALSVFDVSTALAVLAEEQGYCRPHVDDSLSFNIVAGRHPVVE 624 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 + L++Q++ PF+ANDCDLS D +G +WLLTGPNMGGKSTFLRQNALI I+AQMGS+V Sbjct: 625 QALRRQAANPFVANDCDLSPQRDGGNGAIWLLTGPNMGGKSTFLRQNALIAILAQMGSFV 684 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA AHIG+VD+LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA S VILDEIGRGTA Sbjct: 685 PAGSAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQAGEHSLVILDEIGRGTA 744 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DGLSIAWA +EYLHE NRCR L ATHFHE+T LS+ L+R N T++V + + +IFLH Sbjct: 745 TFDGLSIAWAAVEYLHEKNRCRALFATHFHEMTALSEKLERLSNVTMRVKEWDNDVIFLH 804 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DMRLYYPEIQ 858 +V G AD SYG+QV +LAGLP V++RA D+L E + D+ L+ +Q Sbjct: 805 EVAKGAADRSYGVQVARLAGLPEAVVNRARDVLHQLEAGETSGKADKLIDDLPLFSVMLQ 864 Query: 859 TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ K + D + ++ DE++P AL +Y +K Sbjct: 865 QEKPKPQIQAKDSELANAVAAISPDELTPREALDLIYKLK 904 >gi|163842417|ref|YP_001626821.1| DNA mismatch repair protein [Brucella suis ATCC 23445] gi|189030706|sp|B0CIQ5|MUTS_BRUSI RecName: Full=DNA mismatch repair protein mutS gi|163673140|gb|ABY37251.1| DNA mismatch repair protein MutS [Brucella suis ATCC 23445] Length = 910 Score = 1015 bits (2624), Expect = 0.0, Method: Compositional matrix adjust. Identities = 471/880 (53%), Positives = 634/880 (72%), Gaps = 7/880 (0%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QYIEIK+ N DSL+FYRMGDFYELFFDDA+ AS LGITLTKRGKHLG+DIPMCG Sbjct: 25 TPMMEQYIEIKAANVDSLLFYRMGDFYELFFDDAVAASAALGITLTKRGKHLGEDIPMCG 84 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH A+ Y+QKLI G+R+A+CEQ+E P EAKKRG+KS+V+R+V+RLVTPGTLTE++LL Sbjct: 85 VPVHAADDYLQKLIAKGYRVAVCEQVEDPAEAKKRGSKSVVKRDVIRLVTPGTLTEEKLL 144 Query: 146 SPTDSNYLMAVARIRTE--WAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 P +N+LMA+ R R + A+AWIDISTG F+++ + DRL +DIMR+DPRE++ ++ Sbjct: 145 DPAQANFLMAMGRTRGDGALALAWIDISTGTFRVAETTPDRLFADIMRVDPRELVVADSA 204 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 E + +F+ +G QP FD + +++RI Y+N+ T+D FG FS+ E +A + A Sbjct: 205 FHDEELRPVFDLIGKAVTPQPATLFDSAAAQTRIQHYFNVATLDGFGQFSRPELSAISGA 264 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 I+YI+KTQ+ +P + PERE TLFID A R++LE+ RT+SG+R+ SLLK ID ++T Sbjct: 265 IAYIEKTQISERPPLMRPEREHEGGTLFIDPATRASLELARTMSGNRDGSLLKAIDRTVT 324 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G G RL AER+ +PLT +I RLDS+++ + L ++ LK PD+PR+LSRL + Sbjct: 325 GGGARLLAERLTAPLTSPKEIALRLDSVSWCLSEQTLCEALRLELKGVPDMPRALSRLAV 384 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 GRG P+D+ + G + I +L LP+EL A E ++K+P L L+D+L Sbjct: 385 GRGGPRDLGALACGFEAAGGIASLLDGALLPDELAAARESIEKMPAGFAAHLDRALADEL 444 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P KRDGGF+R+G ++ LDE R+LRDQS+R+IA LQ Y EET IK+LKIKHNN LGYFI Sbjct: 445 PLLKRDGGFVREGYNSELDEMRALRDQSRRVIAGLQADYIEETGIKSLKIKHNNVLGYFI 504 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EVT++++ + E+K RFIHRQTM+N RFTT EL +LE++I NA + AL IEL FE Sbjct: 505 EVTANNSGAMTDTDEAKSRFIHRQTMANAMRFTTTELAELESKIANAADRALSIELAIFE 564 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L+ + ++S+ A+ +++ D+S ALA+LA+EQ YCRP +D+S +F + GRHP+VE Sbjct: 565 ELTAEAVAHADSIRAAASALSVFDVSTALAVLAEEQGYCRPHVDDSLSFNIVAGRHPVVE 624 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 + L++Q++ PF+ANDCDLS D G +WLLTGPNMGGKSTFLRQNALI I+AQMGS+V Sbjct: 625 QALRRQAANPFVANDCDLSPQRDGGDGAIWLLTGPNMGGKSTFLRQNALIAILAQMGSFV 684 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA AHIG+VD+LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA S VILDEIGRGTA Sbjct: 685 PAGSAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQAGEHSLVILDEIGRGTA 744 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DGLSIAWA +EYLHE NRCR L ATHFHE+T LS+ L+R N T++V + + +IFLH Sbjct: 745 TFDGLSIAWAAVEYLHEKNRCRALFATHFHEMTALSEKLERLSNVTMRVKEWDNDVIFLH 804 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DMRLYYPEIQ 858 +V G AD SYG+QV +LAGLP V++RA D+L E + D+ L+ +Q Sbjct: 805 EVAKGAADRSYGVQVARLAGLPEAVVNRARDVLHQLEAGETSGKADRLIDDLPLFSVMLQ 864 Query: 859 TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ K + D + ++ DE++P AL +Y +K Sbjct: 865 QEKPKPQIQAKDSELANAVAAISPDELTPREALDLIYKLK 904 >gi|254700956|ref|ZP_05162784.1| DNA mismatch repair protein MutS [Brucella suis bv. 5 str. 513] gi|261751475|ref|ZP_05995184.1| DNA mismatch repair protein mutS [Brucella suis bv. 5 str. 513] gi|261741228|gb|EEY29154.1| DNA mismatch repair protein mutS [Brucella suis bv. 5 str. 513] Length = 910 Score = 1014 bits (2623), Expect = 0.0, Method: Compositional matrix adjust. Identities = 471/880 (53%), Positives = 634/880 (72%), Gaps = 7/880 (0%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QYIEIK+ N DSL+FYRMGDFYELFFDDA+ AS LGITLTKRGKHLG+DIPMCG Sbjct: 25 TPMMEQYIEIKAANVDSLLFYRMGDFYELFFDDAVAASAALGITLTKRGKHLGEDIPMCG 84 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH A+ Y+QKLI G+R+A+CEQ+E P EAKKRG+KS+V+R+V+RLVTPGTLTE++LL Sbjct: 85 VPVHAADDYLQKLIAKGYRVAVCEQVEDPAEAKKRGSKSVVKRDVIRLVTPGTLTEEKLL 144 Query: 146 SPTDSNYLMAVARIRTE--WAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 P +N+LMA+ R R + A+AWIDISTG F+++ + DRL +DIMR+DPRE++ ++ Sbjct: 145 DPAQANFLMAMGRTRGDGALALAWIDISTGTFRVAETTPDRLFADIMRVDPRELVVADSA 204 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 E + +F+ +G QP FD + +++RI Y+N+ T+D FG FS+ E +A + A Sbjct: 205 FHDEELRPVFDLIGKAVTPQPATLFDSAAAQTRIQHYFNVATLDGFGQFSRPELSAISGA 264 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 I+YI+KTQ+ +P + PERE TLFID A R++LE+ RT+SG+R+ SLLK ID ++T Sbjct: 265 IAYIEKTQISERPPLMRPEREHEGGTLFIDPATRASLELARTMSGNRDGSLLKAIDRTVT 324 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G G RL AER+ +PLT +I RLDS+++ + L ++ LK PD+PR+LSRL + Sbjct: 325 GGGARLLAERLTAPLTSPKEIALRLDSVSWCLSEQTLCEALRLELKGVPDMPRALSRLAV 384 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 GRG P+D+ + G + I +L LP+EL A E ++K+P L L+D+L Sbjct: 385 GRGGPRDLGALACGFEAAGGIASLLDGALLPDELAAAREAIEKMPAGFAAHLDRALADEL 444 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P KRDGGF+R+G ++ LDE R+LRDQS+R+IA LQ Y EET IK+LKIKHNN LGYFI Sbjct: 445 PLLKRDGGFVREGYNSELDEMRALRDQSRRVIAGLQADYIEETGIKSLKIKHNNVLGYFI 504 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EVT++++ + E+K RFIHRQTM+N RFTT EL +LE++I NA + AL IEL FE Sbjct: 505 EVTANNSGAMTDTDEAKSRFIHRQTMANAMRFTTTELAELESKIANAADRALSIELAIFE 564 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L+ + ++S+ A+ +++ D+S ALA+LA+EQ YCRP +D+S +F + GRHP+VE Sbjct: 565 ELTAEAVAHADSIRAAASALSVFDVSTALAVLAEEQGYCRPHVDDSLSFNIVAGRHPVVE 624 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 + L++Q++ PF+ANDCDLS D G +WLLTGPNMGGKSTFLRQNALI I+AQMGS+V Sbjct: 625 QALRRQAANPFVANDCDLSPQRDGGDGAIWLLTGPNMGGKSTFLRQNALIAILAQMGSFV 684 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA AHIG+VD+LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA S VILDEIGRGTA Sbjct: 685 PAGSAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQAGEHSLVILDEIGRGTA 744 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DGLSIAWA +EYLHE NRCR L ATHFHE+T LS+ L+R N T++V + + +IFLH Sbjct: 745 TFDGLSIAWAAVEYLHEKNRCRALFATHFHEMTALSEKLERLSNVTMRVKEWDNDVIFLH 804 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DMRLYYPEIQ 858 +V G AD SYG+QV +LAGLP V++RA D+L E + D+ L+ +Q Sbjct: 805 EVAKGAADRSYGVQVARLAGLPEAVVNRARDVLHQLEAGETSGKADRLIDDLPLFSVMLQ 864 Query: 859 TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ K + D + ++ DE++P AL +Y +K Sbjct: 865 QEKPKPQIQAKDSELANAVAAISPDELTPREALDLIYKLK 904 >gi|62289123|ref|YP_220916.1| DNA mismatch repair protein MutS [Brucella abortus bv. 1 str. 9-941] gi|82699062|ref|YP_413636.1| DNA mismatch repair protein MutS [Brucella melitensis biovar Abortus 2308] gi|189023400|ref|YP_001934168.1| DNA mismatch repair protein MutS [Brucella abortus S19] gi|254690451|ref|ZP_05153705.1| DNA mismatch repair protein MutS [Brucella abortus bv. 6 str. 870] gi|254694940|ref|ZP_05156768.1| DNA mismatch repair protein MutS [Brucella abortus bv. 3 str. Tulya] gi|254696571|ref|ZP_05158399.1| DNA mismatch repair protein MutS [Brucella abortus bv. 2 str. 86/8/59] gi|254731484|ref|ZP_05190062.1| DNA mismatch repair protein MutS [Brucella abortus bv. 4 str. 292] gi|256258707|ref|ZP_05464243.1| DNA mismatch repair protein MutS [Brucella abortus bv. 9 str. C68] gi|260546421|ref|ZP_05822161.1| DNA mismatch repair protein mutS [Brucella abortus NCTC 8038] gi|260756003|ref|ZP_05868351.1| DNA mismatch repair protein mutS [Brucella abortus bv. 6 str. 870] gi|260759227|ref|ZP_05871575.1| DNA mismatch repair protein mutS [Brucella abortus bv. 4 str. 292] gi|260760949|ref|ZP_05873292.1| DNA mismatch repair protein mutS [Brucella abortus bv. 2 str. 86/8/59] gi|260885023|ref|ZP_05896637.1| DNA mismatch repair protein mutS [Brucella abortus bv. 9 str. C68] gi|261215279|ref|ZP_05929560.1| DNA mismatch repair protein mutS [Brucella abortus bv. 3 str. Tulya] gi|297247539|ref|ZP_06931257.1| DNA mismatch repair protein MutS [Brucella abortus bv. 5 str. B3196] gi|75505362|sp|Q57FM9|MUTS_BRUAB RecName: Full=DNA mismatch repair protein mutS gi|123546779|sp|Q2YNZ0|MUTS_BRUA2 RecName: Full=DNA mismatch repair protein mutS gi|62195255|gb|AAX73555.1| MutS, DNA mismatch repair protein [Brucella abortus bv. 1 str. 9-941] gi|82615163|emb|CAJ10102.1| DNA mismatch repair protein MutS, C-terminal:Aldo/keto reductase:ATP/GTP-binding site motif A (P-loop):MutS 1 protein:DNA mis [Brucella melitensis biovar Abortus 2308] gi|189018972|gb|ACD71694.1| DNA mismatch repair protein [Brucella abortus S19] gi|260096528|gb|EEW80404.1| DNA mismatch repair protein mutS [Brucella abortus NCTC 8038] gi|260669545|gb|EEX56485.1| DNA mismatch repair protein mutS [Brucella abortus bv. 4 str. 292] gi|260671381|gb|EEX58202.1| DNA mismatch repair protein mutS [Brucella abortus bv. 2 str. 86/8/59] gi|260676111|gb|EEX62932.1| DNA mismatch repair protein mutS [Brucella abortus bv. 6 str. 870] gi|260874551|gb|EEX81620.1| DNA mismatch repair protein mutS [Brucella abortus bv. 9 str. C68] gi|260916886|gb|EEX83747.1| DNA mismatch repair protein mutS [Brucella abortus bv. 3 str. Tulya] gi|297174708|gb|EFH34055.1| DNA mismatch repair protein MutS [Brucella abortus bv. 5 str. B3196] Length = 910 Score = 1014 bits (2623), Expect = 0.0, Method: Compositional matrix adjust. Identities = 471/880 (53%), Positives = 634/880 (72%), Gaps = 7/880 (0%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QYIEIK+ N DSL+FYRMGDFYELFFDDA+ AS LGITLTKRGKHLG+DIPMCG Sbjct: 25 TPMMEQYIEIKAANVDSLLFYRMGDFYELFFDDAVAASAALGITLTKRGKHLGEDIPMCG 84 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH A+ Y+QKLI G+R+A+CEQ+E P EAKKRG+KS+V+R+V+RLVTPGTLTE++LL Sbjct: 85 VPVHAADDYLQKLIAKGYRVAVCEQVEDPAEAKKRGSKSVVKRDVIRLVTPGTLTEEKLL 144 Query: 146 SPTDSNYLMAVARIRTEWAIA--WIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 P +N+LMA+ R R + A+A WIDISTG F+++ + DRL +DIMR+DPRE++ ++ Sbjct: 145 DPAQANFLMAMGRTRGDGALALVWIDISTGTFRVAETTPDRLFADIMRVDPRELVVADSA 204 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 E + +F+ +G QP FD + +++RI Y+N+ T+D FG FS+ E +A + A Sbjct: 205 FHDEELRPVFDLIGKAVTPQPATLFDSAAAQTRIQHYFNVATLDGFGQFSRPELSAISGA 264 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 I+YI+KTQ+ +P + PERE TLFID A R++LE+ RT+SG+R+ SLLK ID ++T Sbjct: 265 IAYIEKTQISERPPLMRPEREHEGGTLFIDPATRASLELARTMSGNRDGSLLKAIDRTVT 324 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G G RL AER+ +PLT +I RLDS+++ + L ++ LK PD+PR+LSRL + Sbjct: 325 GGGARLLAERLTAPLTSPKEIALRLDSVSWCLSEQTLCEALRLELKGVPDMPRALSRLAV 384 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 GRG P+D+ + G + I +L LP+EL A E ++K+P L L+D+L Sbjct: 385 GRGGPRDLGALACGFEAAGGIASLLDGALLPDELAAAREAIEKMPAGFAAHLDRALADEL 444 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P KRDGGF+R+G ++ LDE R+LRDQS+R+IA LQ Y EET IK+LKIKHNN LGYFI Sbjct: 445 PLLKRDGGFVREGYNSELDEMRALRDQSRRVIAGLQADYIEETGIKSLKIKHNNVLGYFI 504 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EVT++++ + E+K RFIHRQTM+N RFTT EL +LE++I NA + AL IEL FE Sbjct: 505 EVTANNSGAMTDTDEAKSRFIHRQTMANAMRFTTTELAELESKIANAADRALSIELAIFE 564 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L+ + ++S+ A+ +++ D+S ALA+LA+EQ YCRP +D+S +F + GRHP+VE Sbjct: 565 ELTAEAVAHADSIRAAASALSVFDVSTALAVLAEEQGYCRPHVDDSLSFNIVAGRHPVVE 624 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 + L++Q++ PF+ANDCDLS D G +WLLTGPNMGGKSTFLRQNALI I+AQMGS+V Sbjct: 625 QALRRQAANPFVANDCDLSPQRDGGDGAIWLLTGPNMGGKSTFLRQNALIAILAQMGSFV 684 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA AHIG+VD+LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA S VILDEIGRGTA Sbjct: 685 PAGSAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQAGEHSLVILDEIGRGTA 744 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DGLSIAWA +EYLHE NRCR L ATHFHE+T LS+ L+R N T++V + + +IFLH Sbjct: 745 TFDGLSIAWAAVEYLHEKNRCRALFATHFHEMTALSEKLERLSNVTMRVKEWDNDVIFLH 804 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DMRLYYPEIQ 858 +V G AD SYG+QV +LAGLP V++RA D+L E + D+ L+ +Q Sbjct: 805 EVAKGAADRSYGVQVARLAGLPEAVVNRARDVLHQLEAGETSGKADRLIDDLPLFSVMLQ 864 Query: 859 TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ K + D + ++ DE++P AL +Y +K Sbjct: 865 QEKPKPQIQAKDSELANAVAAISPDELTPREALDLIYKLK 904 >gi|148559861|ref|YP_001258180.1| DNA mismatch repair protein MutS [Brucella ovis ATCC 25840] gi|189030705|sp|A5VN83|MUTS_BRUO2 RecName: Full=DNA mismatch repair protein mutS gi|148371118|gb|ABQ61097.1| DNA mismatch repair protein MutS [Brucella ovis ATCC 25840] Length = 898 Score = 1014 bits (2623), Expect = 0.0, Method: Compositional matrix adjust. Identities = 471/880 (53%), Positives = 633/880 (71%), Gaps = 7/880 (0%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QYIEIK+ N DSL+FYRMGDFYELFFDDA+ AS LGITLTKRGKHLG+DIPMCG Sbjct: 13 TPMMEQYIEIKAANVDSLLFYRMGDFYELFFDDAVAASAALGITLTKRGKHLGEDIPMCG 72 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH A+ Y+QKLI G+R+A+CEQ+E P EAKKRG+KS+V+R+V+RLVTPGTLTE++LL Sbjct: 73 VPVHAADDYLQKLIAKGYRVAVCEQVEDPAEAKKRGSKSVVKRDVIRLVTPGTLTEEKLL 132 Query: 146 SPTDSNYLMAVARIRTE--WAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 P +N+LMA+ R R + A+AWIDISTG F+++ + DRL +DIMR+DPRE++ ++ Sbjct: 133 DPAQANFLMAMGRTRGDGALALAWIDISTGTFRVAETTPDRLFADIMRVDPRELVVADSA 192 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 E + +F+ +G QP FD + +++RI Y+N+ T+D FG FS+ E +A + A Sbjct: 193 FHDEELRPVFDLIGKAVTPQPATLFDSAAAQTRIQHYFNVATLDGFGQFSRPELSAISGA 252 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 I+YI+KTQ+ +P + PERE TLFID A R++LE+ RT+SG R+ SLLK ID ++T Sbjct: 253 IAYIEKTQISERPPLMRPEREHEGGTLFIDPATRASLELARTMSGKRDGSLLKAIDRTVT 312 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G G RL AER+ +PLT +I RLDS+++ + L ++ LK PD+PR+LSRL + Sbjct: 313 GGGARLLAERLTAPLTSPKEIAPRLDSVSWCLSEQTLCEALRLELKGVPDMPRALSRLAV 372 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 GRG P+D+ + G + I +L LP+EL A E ++K+P L L+D+L Sbjct: 373 GRGGPRDLGALACGFEAAGGIASLLDGALLPDELAAAREAIEKMPAGFAAHLDRALADEL 432 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P KRDGGF+R+G ++ LDE R+LRDQS+R+IA LQ Y EET IK+LKIKHNN LGYFI Sbjct: 433 PLLKRDGGFVREGYNSELDEMRALRDQSRRVIAGLQADYIEETGIKSLKIKHNNVLGYFI 492 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EVT++++ + E+K RFIHRQTM+N RFTT EL +LE++I NA + AL IEL FE Sbjct: 493 EVTANNSGAMTDTDEAKSRFIHRQTMANAMRFTTTELAELESKIANAADRALSIELAIFE 552 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L+ + ++S+ A+ +++ D+S ALA+LA+EQ YCRP +D+S +F + GRHP+VE Sbjct: 553 ELTAEAVAHADSIRAAASALSVFDVSTALAVLAEEQGYCRPHVDDSLSFNIVAGRHPVVE 612 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 + L++Q++ PF+ANDCDLS D G +WLLTGPNMGGKSTFLRQNALI I+AQMGS+V Sbjct: 613 QALRRQAANPFVANDCDLSPQRDGGDGAIWLLTGPNMGGKSTFLRQNALIAILAQMGSFV 672 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA AHIG+VD+LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA S VILDEIGRGTA Sbjct: 673 PAGSAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQAGEHSLVILDEIGRGTA 732 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DGLSIAWA +EYLHE NRCR L ATHFHE+T LS+ L+R N T++V + + +IFLH Sbjct: 733 TFDGLSIAWAAVEYLHEKNRCRALFATHFHEMTALSEKLERLSNVTMRVKEWDNDVIFLH 792 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DMRLYYPEIQ 858 +V G AD SYG+QV +LAGLP V++RA D+L E + D+ L+ +Q Sbjct: 793 EVAKGAADRSYGVQVARLAGLPEAVVNRARDVLHQLEAGETSGKADRLIDDLPLFSVMLQ 852 Query: 859 TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ K + D + ++ DE++P AL +Y +K Sbjct: 853 QEKPKPQIQAKDSELANAVAAISPDELTPREALDLIYKLK 892 >gi|237814617|ref|ZP_04593615.1| DNA mismatch repair protein MutS [Brucella abortus str. 2308 A] gi|237789454|gb|EEP63664.1| DNA mismatch repair protein MutS [Brucella abortus str. 2308 A] Length = 915 Score = 1014 bits (2623), Expect = 0.0, Method: Compositional matrix adjust. Identities = 471/880 (53%), Positives = 634/880 (72%), Gaps = 7/880 (0%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QYIEIK+ N DSL+FYRMGDFYELFFDDA+ AS LGITLTKRGKHLG+DIPMCG Sbjct: 30 TPMMEQYIEIKAANVDSLLFYRMGDFYELFFDDAVAASAALGITLTKRGKHLGEDIPMCG 89 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH A+ Y+QKLI G+R+A+CEQ+E P EAKKRG+KS+V+R+V+RLVTPGTLTE++LL Sbjct: 90 VPVHAADDYLQKLIAKGYRVAVCEQVEDPAEAKKRGSKSVVKRDVIRLVTPGTLTEEKLL 149 Query: 146 SPTDSNYLMAVARIRTEWAIA--WIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 P +N+LMA+ R R + A+A WIDISTG F+++ + DRL +DIMR+DPRE++ ++ Sbjct: 150 DPAQANFLMAMGRTRGDGALALVWIDISTGTFRVAETTPDRLFADIMRVDPRELVVADSA 209 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 E + +F+ +G QP FD + +++RI Y+N+ T+D FG FS+ E +A + A Sbjct: 210 FHDEELRPVFDLIGKAVTPQPATLFDSAAAQTRIQHYFNVATLDGFGQFSRPELSAISGA 269 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 I+YI+KTQ+ +P + PERE TLFID A R++LE+ RT+SG+R+ SLLK ID ++T Sbjct: 270 IAYIEKTQISERPPLMRPEREHEGGTLFIDPATRASLELARTMSGNRDGSLLKAIDRTVT 329 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G G RL AER+ +PLT +I RLDS+++ + L ++ LK PD+PR+LSRL + Sbjct: 330 GGGARLLAERLTAPLTSPKEIALRLDSVSWCLSEQTLCEALRLELKGVPDMPRALSRLAV 389 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 GRG P+D+ + G + I +L LP+EL A E ++K+P L L+D+L Sbjct: 390 GRGGPRDLGALACGFEAAGGIASLLDGALLPDELAAAREAIEKMPAGFAAHLDRALADEL 449 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P KRDGGF+R+G ++ LDE R+LRDQS+R+IA LQ Y EET IK+LKIKHNN LGYFI Sbjct: 450 PLLKRDGGFVREGYNSELDEMRALRDQSRRVIAGLQADYIEETGIKSLKIKHNNVLGYFI 509 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EVT++++ + E+K RFIHRQTM+N RFTT EL +LE++I NA + AL IEL FE Sbjct: 510 EVTANNSGAMTDTDEAKSRFIHRQTMANAMRFTTTELAELESKIANAADRALSIELAIFE 569 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L+ + ++S+ A+ +++ D+S ALA+LA+EQ YCRP +D+S +F + GRHP+VE Sbjct: 570 ELTAEAVAHADSIRAAASALSVFDVSTALAVLAEEQGYCRPHVDDSLSFNIVAGRHPVVE 629 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 + L++Q++ PF+ANDCDLS D G +WLLTGPNMGGKSTFLRQNALI I+AQMGS+V Sbjct: 630 QALRRQAANPFVANDCDLSPQRDGGDGAIWLLTGPNMGGKSTFLRQNALIAILAQMGSFV 689 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA AHIG+VD+LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA S VILDEIGRGTA Sbjct: 690 PAGSAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQAGEHSLVILDEIGRGTA 749 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DGLSIAWA +EYLHE NRCR L ATHFHE+T LS+ L+R N T++V + + +IFLH Sbjct: 750 TFDGLSIAWAAVEYLHEKNRCRALFATHFHEMTALSEKLERLSNVTMRVKEWDNDVIFLH 809 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DMRLYYPEIQ 858 +V G AD SYG+QV +LAGLP V++RA D+L E + D+ L+ +Q Sbjct: 810 EVAKGAADRSYGVQVARLAGLPEAVVNRARDVLHQLEAGETSGKADRLIDDLPLFSVMLQ 869 Query: 859 TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ K + D + ++ DE++P AL +Y +K Sbjct: 870 QEKPKPQIQAKDSELANAVAAISPDELTPREALDLIYKLK 909 >gi|254707161|ref|ZP_05168989.1| DNA mismatch repair protein MutS [Brucella pinnipedialis M163/99/10] gi|254713281|ref|ZP_05175092.1| DNA mismatch repair protein MutS [Brucella ceti M644/93/1] gi|254716366|ref|ZP_05178177.1| DNA mismatch repair protein MutS [Brucella ceti M13/05/1] gi|256045938|ref|ZP_05448810.1| DNA mismatch repair protein MutS [Brucella melitensis bv. 1 str. Rev.1] gi|256060289|ref|ZP_05450462.1| DNA mismatch repair protein MutS [Brucella neotomae 5K33] gi|256112651|ref|ZP_05453572.1| DNA mismatch repair protein MutS [Brucella melitensis bv. 3 str. Ether] gi|256158844|ref|ZP_05456701.1| DNA mismatch repair protein MutS [Brucella ceti M490/95/1] gi|256254225|ref|ZP_05459761.1| DNA mismatch repair protein MutS [Brucella ceti B1/94] gi|260169723|ref|ZP_05756534.1| DNA mismatch repair protein MutS [Brucella sp. F5/99] gi|260563219|ref|ZP_05833705.1| DNA mismatch repair protein mutS [Brucella melitensis bv. 1 str. 16M] gi|261218148|ref|ZP_05932429.1| DNA mismatch repair protein mutS [Brucella ceti M13/05/1] gi|261221374|ref|ZP_05935655.1| DNA mismatch repair protein mutS [Brucella ceti B1/94] gi|261314638|ref|ZP_05953835.1| DNA mismatch repair protein mutS [Brucella pinnipedialis M163/99/10] gi|261321004|ref|ZP_05960201.1| DNA mismatch repair protein mutS [Brucella ceti M644/93/1] gi|261324261|ref|ZP_05963458.1| DNA mismatch repair protein mutS [Brucella neotomae 5K33] gi|261759261|ref|ZP_06002970.1| DNA mismatch repair protein mutS [Brucella sp. F5/99] gi|265992349|ref|ZP_06104906.1| DNA mismatch repair protein mutS [Brucella melitensis bv. 1 str. Rev.1] gi|265994092|ref|ZP_06106649.1| DNA mismatch repair protein mutS [Brucella melitensis bv. 3 str. Ether] gi|265997335|ref|ZP_06109892.1| DNA mismatch repair protein mutS [Brucella ceti M490/95/1] gi|44888234|sp|Q8YES6|MUTS_BRUME RecName: Full=DNA mismatch repair protein mutS gi|260153235|gb|EEW88327.1| DNA mismatch repair protein mutS [Brucella melitensis bv. 1 str. 16M] gi|260919958|gb|EEX86611.1| DNA mismatch repair protein mutS [Brucella ceti B1/94] gi|260923237|gb|EEX89805.1| DNA mismatch repair protein mutS [Brucella ceti M13/05/1] gi|261293694|gb|EEX97190.1| DNA mismatch repair protein mutS [Brucella ceti M644/93/1] gi|261300241|gb|EEY03738.1| DNA mismatch repair protein mutS [Brucella neotomae 5K33] gi|261303664|gb|EEY07161.1| DNA mismatch repair protein mutS [Brucella pinnipedialis M163/99/10] gi|261739245|gb|EEY27241.1| DNA mismatch repair protein mutS [Brucella sp. F5/99] gi|262551803|gb|EEZ07793.1| DNA mismatch repair protein mutS [Brucella ceti M490/95/1] gi|262765073|gb|EEZ10994.1| DNA mismatch repair protein mutS [Brucella melitensis bv. 3 str. Ether] gi|263003415|gb|EEZ15708.1| DNA mismatch repair protein mutS [Brucella melitensis bv. 1 str. Rev.1] Length = 910 Score = 1014 bits (2623), Expect = 0.0, Method: Compositional matrix adjust. Identities = 471/880 (53%), Positives = 634/880 (72%), Gaps = 7/880 (0%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QYIEIK+ N DSL+FYRMGDFYELFFDDA+ AS LGITLTKRGKHLG+DIPMCG Sbjct: 25 TPMMEQYIEIKAANVDSLLFYRMGDFYELFFDDAVAASAALGITLTKRGKHLGEDIPMCG 84 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH A+ Y+QKLI G+R+A+CEQ+E P EAKKRG+KS+V+R+V+RLVTPGTLTE++LL Sbjct: 85 VPVHAADDYLQKLIAKGYRVAVCEQVEDPAEAKKRGSKSVVKRDVIRLVTPGTLTEEKLL 144 Query: 146 SPTDSNYLMAVARIRTE--WAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 P +N+LMA+ R R + A+AWIDISTG F+++ + DRL +DIMR+DPRE++ ++ Sbjct: 145 DPAQANFLMAMGRTRGDGALALAWIDISTGTFRVAETTPDRLFADIMRVDPRELVVADSA 204 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 E + +F+ +G QP FD + +++RI Y+N+ T+D FG FS+ E +A + A Sbjct: 205 FHDEELRPVFDLIGKAVTPQPATLFDSAAAQTRIQHYFNVATLDGFGQFSRPELSAISGA 264 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 I+YI+KTQ+ +P + PERE TLFID A R++LE+ RT+SG+R+ SLLK ID ++T Sbjct: 265 IAYIEKTQISERPPLMRPEREHEGGTLFIDPATRASLELARTMSGNRDGSLLKAIDRTVT 324 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G G RL AER+ +PLT +I RLDS+++ + L ++ LK PD+PR+LSRL + Sbjct: 325 GGGARLLAERLTAPLTSPKEIALRLDSVSWCLSEQTLCEALRLELKGVPDMPRALSRLAV 384 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 GRG P+D+ + G + I +L LP+EL A E ++K+P L L+D+L Sbjct: 385 GRGGPRDLGALACGFEAAGGIASLLDGALLPDELAAAREAIEKMPAGFAAHLDRALADEL 444 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P KRDGGF+R+G ++ LDE R+LRDQS+R+IA LQ Y EET IK+LKIKHNN LGYFI Sbjct: 445 PLLKRDGGFVREGYNSELDEMRALRDQSRRVIAGLQADYIEETGIKSLKIKHNNVLGYFI 504 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EVT++++ + E+K RFIHRQTM+N RFTT EL +LE++I NA + AL IEL FE Sbjct: 505 EVTANNSGAMTDTDEAKSRFIHRQTMANAMRFTTTELAELESKIANAADRALSIELAIFE 564 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L+ + ++S+ A+ +++ D+S ALA+LA+EQ YCRP +D+S +F + GRHP+VE Sbjct: 565 ELTAEAVAHADSIRAAASALSVFDVSTALAVLAEEQGYCRPHVDDSLSFNIVAGRHPVVE 624 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 + L++Q++ PF+ANDCDLS D G +WLLTGPNMGGKSTFLRQNALI I+AQMGS+V Sbjct: 625 QALRRQAANPFVANDCDLSPQRDGGDGAIWLLTGPNMGGKSTFLRQNALIAILAQMGSFV 684 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA AHIG+VD+LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA S VILDEIGRGTA Sbjct: 685 PAGSAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQAGEHSLVILDEIGRGTA 744 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DGLSIAWA +EYLHE NRCR L ATHFHE+T LS+ L+R N T++V + + +IFLH Sbjct: 745 TFDGLSIAWAAVEYLHEKNRCRALFATHFHEMTALSEKLERLSNVTMRVKEWDNDVIFLH 804 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DMRLYYPEIQ 858 +V G AD SYG+QV +LAGLP V++RA D+L E + D+ L+ +Q Sbjct: 805 EVAKGAADRSYGVQVARLAGLPEAVVNRARDVLHQLEAGETSGKADRLIDDLPLFSVMLQ 864 Query: 859 TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ K + D + ++ DE++P AL +Y +K Sbjct: 865 QEKPKPQIQAKDSELANAVAAISPDELTPREALDLIYKLK 904 >gi|254709296|ref|ZP_05171107.1| DNA mismatch repair protein MutS [Brucella pinnipedialis B2/94] gi|256030819|ref|ZP_05444433.1| DNA mismatch repair protein MutS [Brucella pinnipedialis M292/94/1] gi|261316805|ref|ZP_05956002.1| DNA mismatch repair protein mutS [Brucella pinnipedialis B2/94] gi|265987875|ref|ZP_06100432.1| DNA mismatch repair protein mutS [Brucella pinnipedialis M292/94/1] gi|261296028|gb|EEX99524.1| DNA mismatch repair protein mutS [Brucella pinnipedialis B2/94] gi|264660072|gb|EEZ30333.1| DNA mismatch repair protein mutS [Brucella pinnipedialis M292/94/1] Length = 910 Score = 1014 bits (2623), Expect = 0.0, Method: Compositional matrix adjust. Identities = 471/880 (53%), Positives = 634/880 (72%), Gaps = 7/880 (0%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QYIEIK+ N DSL+FYRMGDFYELFFDDA+ AS LGITLTKRGKHLG+DIPMCG Sbjct: 25 TPMMEQYIEIKAANVDSLLFYRMGDFYELFFDDAVAASAALGITLTKRGKHLGEDIPMCG 84 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH A+ Y+QKLI G+R+A+CEQ+E P EAKKRG+KS+V+R+V+RLVTPGTLTE++LL Sbjct: 85 VPVHAADDYLQKLIAKGYRVAVCEQVEDPAEAKKRGSKSVVKRDVIRLVTPGTLTEEKLL 144 Query: 146 SPTDSNYLMAVARIRTE--WAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 P +N+LMA+ R R + A+AWIDISTG F+++ + DRL +DIMR+DPRE++ ++ Sbjct: 145 DPAQTNFLMAMGRTRGDGALALAWIDISTGTFRVAETTPDRLFADIMRVDPRELVVADSA 204 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 E + +F+ +G QP FD + +++RI Y+N+ T+D FG FS+ E +A + A Sbjct: 205 FHDEELRPVFDLIGKAVTPQPATLFDSAAAQTRIQHYFNVATLDGFGQFSRPELSAISGA 264 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 I+YI+KTQ+ +P + PERE TLFID A R++LE+ RT+SG+R+ SLLK ID ++T Sbjct: 265 IAYIEKTQISERPPLMRPEREHEGGTLFIDPATRASLELARTMSGNRDGSLLKAIDRTVT 324 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G G RL AER+ +PLT +I RLDS+++ + L ++ LK PD+PR+LSRL + Sbjct: 325 GGGARLLAERLTAPLTSPKEIALRLDSVSWCLSEQTLCEALRLELKGVPDMPRALSRLAV 384 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 GRG P+D+ + G + I +L LP+EL A E ++K+P L L+D+L Sbjct: 385 GRGGPRDLGALACGFEAAGGIASLLDGALLPDELAAAREAIEKMPAGFAAHLDRALADEL 444 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P KRDGGF+R+G ++ LDE R+LRDQS+R+IA LQ Y EET IK+LKIKHNN LGYFI Sbjct: 445 PLLKRDGGFVREGYNSELDEMRALRDQSRRVIAGLQADYIEETGIKSLKIKHNNVLGYFI 504 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EVT++++ + E+K RFIHRQTM+N RFTT EL +LE++I NA + AL IEL FE Sbjct: 505 EVTANNSGAMTDTDEAKSRFIHRQTMANAMRFTTTELAELESKIANAADRALSIELAIFE 564 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L+ + ++S+ A+ +++ D+S ALA+LA+EQ YCRP +D+S +F + GRHP+VE Sbjct: 565 ELTAEAVAHADSIRAAASALSVFDVSTALAVLAEEQGYCRPHVDDSLSFNIVAGRHPVVE 624 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 + L++Q++ PF+ANDCDLS D G +WLLTGPNMGGKSTFLRQNALI I+AQMGS+V Sbjct: 625 QALRRQAANPFVANDCDLSPQRDGGDGAIWLLTGPNMGGKSTFLRQNALIAILAQMGSFV 684 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA AHIG+VD+LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA S VILDEIGRGTA Sbjct: 685 PAGSAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQAGEHSLVILDEIGRGTA 744 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DGLSIAWA +EYLHE NRCR L ATHFHE+T LS+ L+R N T++V + + +IFLH Sbjct: 745 TFDGLSIAWAAVEYLHEKNRCRALFATHFHEMTALSEKLERLSNVTMRVKEWDNDVIFLH 804 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DMRLYYPEIQ 858 +V G AD SYG+QV +LAGLP V++RA D+L E + D+ L+ +Q Sbjct: 805 EVAKGAADRSYGVQVARLAGLPEAVVNRARDVLHQLEAGETSGKADRLIDDLPLFSVMLQ 864 Query: 859 TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ K + D + ++ DE++P AL +Y +K Sbjct: 865 QEKPKPQIQAKDSELANAVAAISPDELTPREALDLIYKLK 904 >gi|306842566|ref|ZP_07475217.1| DNA mismatch repair protein MutS [Brucella sp. BO2] gi|306844415|ref|ZP_07477005.1| DNA mismatch repair protein MutS [Brucella sp. BO1] gi|306275228|gb|EFM56978.1| DNA mismatch repair protein MutS [Brucella sp. BO1] gi|306287422|gb|EFM58902.1| DNA mismatch repair protein MutS [Brucella sp. BO2] Length = 910 Score = 1014 bits (2623), Expect = 0.0, Method: Compositional matrix adjust. Identities = 471/880 (53%), Positives = 635/880 (72%), Gaps = 7/880 (0%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QYIEIK+ N DSL+FYRMGDFYELFFDDA+ AS LGITLTKRGKHLG+DIPMCG Sbjct: 25 TPMMEQYIEIKAANVDSLLFYRMGDFYELFFDDAVAASAALGITLTKRGKHLGEDIPMCG 84 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH A+ Y+QKLI G+R+A+CEQ+E P EAKKRG+KS+V+R+V+RLVTPGTLTE++LL Sbjct: 85 VPVHAADDYLQKLIAKGYRVAVCEQVEDPAEAKKRGSKSVVKRDVIRLVTPGTLTEEKLL 144 Query: 146 SPTDSNYLMAVARIRTE--WAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 P +N+LMA+ R R + A+AWIDISTG F+++ + DRL +DIMR+DPRE++ ++ Sbjct: 145 DPAQANFLMAMGRTRGDGALALAWIDISTGTFRVAETTPDRLFADIMRVDPRELVVADSA 204 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 E + +F+ +G QP FD + +++RI Y+N+ T+D FG FS+ E +A + A Sbjct: 205 FHDEELRPVFDLIGKAVTPQPATLFDSAAAQTRIQHYFNVATLDGFGQFSRPELSAISGA 264 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 I+YI+KTQ+ +P + PERE TLFID A R++LE+ RT+SG+R+ SLLK ID ++T Sbjct: 265 IAYIEKTQISERPPLMRPEREHEGGTLFIDPATRASLELARTMSGNRDGSLLKAIDRTVT 324 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G G RL AER+ +PLT +I RLDS+++ + L ++ LK PD+PR+LSRL + Sbjct: 325 GGGARLLAERLTAPLTSPKEIALRLDSVSWCLSEQTLCEALRLELKGVPDMPRALSRLAV 384 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 GRG P+D+ + G + I +L LP+EL A E ++K+P L L+D+L Sbjct: 385 GRGGPRDLGALACGFEAAGGIASLLDGALLPDELAAAREAIEKMPAGFAAHLDRALADEL 444 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P KRDGGF+R+G ++ LDE R+LRDQS+R+IA LQ Y EET IK+LKIKHNN LGYFI Sbjct: 445 PLLKRDGGFVREGYNSELDEMRALRDQSRRVIAGLQADYIEETGIKSLKIKHNNVLGYFI 504 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EVT++++ + E+K RFIHRQTM+N RFTT EL +LE++I NA + AL IEL FE Sbjct: 505 EVTANNSGAMTDTDEAKSRFIHRQTMANAMRFTTTELAELESKIANAADRALSIELAIFE 564 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L+ + ++S+ A+ +++ D+S ALA+LA+EQ YCRP +D+S +F + GRHP+VE Sbjct: 565 ELTAEAVAHADSIRAAASALSVFDVSTALAVLAEEQGYCRPHVDDSLSFNIVAGRHPVVE 624 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 + L++Q++ PF+ANDCDLS D +G +WLLTGPNMGGKSTFLRQNALI I+AQMGS+V Sbjct: 625 QALRRQAANPFVANDCDLSPQRDGGNGAIWLLTGPNMGGKSTFLRQNALIAILAQMGSFV 684 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA AHIG+VD+LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA S VILDEIGRGTA Sbjct: 685 PAGSAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQAGEHSLVILDEIGRGTA 744 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DGLSIAWA +EYLHE NRCR L ATHFHE+T LS+ L+R N T++V + + +IFLH Sbjct: 745 TFDGLSIAWAAVEYLHEKNRCRALFATHFHEMTALSEKLERLSNVTMRVKEWDNDVIFLH 804 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DMRLYYPEIQ 858 +V G AD SYG+QV +LAGLP V++RA D+L E + D+ L+ +Q Sbjct: 805 EVAKGAADRSYGVQVARLAGLPEAVVNRARDVLHQLEAGETSGKADKLIDDLPLFSVMLQ 864 Query: 859 TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ K + D + ++ DE++P AL +Y +K Sbjct: 865 QEKPKPQIQAKDSELANAVAAISPDELTPREALDLIYKLK 904 >gi|17988084|ref|NP_540718.1| DNA mismatch repair protein MutS [Brucella melitensis bv. 1 str. 16M] gi|225626686|ref|ZP_03784725.1| DNA mismatch repair protein MutS [Brucella ceti str. Cudo] gi|17983835|gb|AAL52982.1| DNA mismatch repair protein muts [Brucella melitensis bv. 1 str. 16M] gi|225618343|gb|EEH15386.1| DNA mismatch repair protein MutS [Brucella ceti str. Cudo] Length = 915 Score = 1014 bits (2622), Expect = 0.0, Method: Compositional matrix adjust. Identities = 471/880 (53%), Positives = 634/880 (72%), Gaps = 7/880 (0%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QYIEIK+ N DSL+FYRMGDFYELFFDDA+ AS LGITLTKRGKHLG+DIPMCG Sbjct: 30 TPMMEQYIEIKAANVDSLLFYRMGDFYELFFDDAVAASAALGITLTKRGKHLGEDIPMCG 89 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH A+ Y+QKLI G+R+A+CEQ+E P EAKKRG+KS+V+R+V+RLVTPGTLTE++LL Sbjct: 90 VPVHAADDYLQKLIAKGYRVAVCEQVEDPAEAKKRGSKSVVKRDVIRLVTPGTLTEEKLL 149 Query: 146 SPTDSNYLMAVARIRTE--WAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 P +N+LMA+ R R + A+AWIDISTG F+++ + DRL +DIMR+DPRE++ ++ Sbjct: 150 DPAQANFLMAMGRTRGDGALALAWIDISTGTFRVAETTPDRLFADIMRVDPRELVVADSA 209 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 E + +F+ +G QP FD + +++RI Y+N+ T+D FG FS+ E +A + A Sbjct: 210 FHDEELRPVFDLIGKAVTPQPATLFDSAAAQTRIQHYFNVATLDGFGQFSRPELSAISGA 269 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 I+YI+KTQ+ +P + PERE TLFID A R++LE+ RT+SG+R+ SLLK ID ++T Sbjct: 270 IAYIEKTQISERPPLMRPEREHEGGTLFIDPATRASLELARTMSGNRDGSLLKAIDRTVT 329 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G G RL AER+ +PLT +I RLDS+++ + L ++ LK PD+PR+LSRL + Sbjct: 330 GGGARLLAERLTAPLTSPKEIALRLDSVSWCLSEQTLCEALRLELKGVPDMPRALSRLAV 389 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 GRG P+D+ + G + I +L LP+EL A E ++K+P L L+D+L Sbjct: 390 GRGGPRDLGALACGFEAAGGIASLLDGALLPDELAAAREAIEKMPAGFAAHLDRALADEL 449 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P KRDGGF+R+G ++ LDE R+LRDQS+R+IA LQ Y EET IK+LKIKHNN LGYFI Sbjct: 450 PLLKRDGGFVREGYNSELDEMRALRDQSRRVIAGLQADYIEETGIKSLKIKHNNVLGYFI 509 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EVT++++ + E+K RFIHRQTM+N RFTT EL +LE++I NA + AL IEL FE Sbjct: 510 EVTANNSGAMTDTDEAKSRFIHRQTMANAMRFTTTELAELESKIANAADRALSIELAIFE 569 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L+ + ++S+ A+ +++ D+S ALA+LA+EQ YCRP +D+S +F + GRHP+VE Sbjct: 570 ELTAEAVAHADSIRAAASALSVFDVSTALAVLAEEQGYCRPHVDDSLSFNIVAGRHPVVE 629 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 + L++Q++ PF+ANDCDLS D G +WLLTGPNMGGKSTFLRQNALI I+AQMGS+V Sbjct: 630 QALRRQAANPFVANDCDLSPQRDGGDGAIWLLTGPNMGGKSTFLRQNALIAILAQMGSFV 689 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA AHIG+VD+LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA S VILDEIGRGTA Sbjct: 690 PAGSAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQAGEHSLVILDEIGRGTA 749 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DGLSIAWA +EYLHE NRCR L ATHFHE+T LS+ L+R N T++V + + +IFLH Sbjct: 750 TFDGLSIAWAAVEYLHEKNRCRALFATHFHEMTALSEKLERLSNVTMRVKEWDNDVIFLH 809 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DMRLYYPEIQ 858 +V G AD SYG+QV +LAGLP V++RA D+L E + D+ L+ +Q Sbjct: 810 EVAKGAADRSYGVQVARLAGLPEAVVNRARDVLHQLEAGETSGKADRLIDDLPLFSVMLQ 869 Query: 859 TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ K + D + ++ DE++P AL +Y +K Sbjct: 870 QEKPKPQIQAKDSELANAVAAISPDELTPREALDLIYKLK 909 >gi|256368611|ref|YP_003106117.1| DNA mismatch repair protein [Brucella microti CCM 4915] gi|255998769|gb|ACU47168.1| DNA mismatch repair protein [Brucella microti CCM 4915] Length = 910 Score = 1014 bits (2622), Expect = 0.0, Method: Compositional matrix adjust. Identities = 471/880 (53%), Positives = 633/880 (71%), Gaps = 7/880 (0%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QYIEIK+ N DSL+FYRMGDFYELFFDDA+ AS LGITLTKRGKHLG+DIPMCG Sbjct: 25 TPMMEQYIEIKAANVDSLLFYRMGDFYELFFDDAVAASAALGITLTKRGKHLGEDIPMCG 84 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH A+ Y+QKLI G+R+A+CEQ+E P EAKKRG+KS+V+R+V+RLVTPGTLTE++LL Sbjct: 85 VPVHAADDYLQKLIAKGYRVAVCEQVEDPAEAKKRGSKSVVKRDVIRLVTPGTLTEEKLL 144 Query: 146 SPTDSNYLMAVARIRTE--WAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 P +N+LMA+ R R + A+AWIDISTG F+++ + DRL +DIMR+DPRE++ ++ Sbjct: 145 DPAQANFLMAMGRTRGDGALALAWIDISTGTFRVAETTPDRLFADIMRVDPRELVVADSA 204 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 E + +F+ +G QP FD + +++RI Y+N+ T+D FG FS+ E +A + A Sbjct: 205 FHDEELRPVFDLIGKAVAPQPATLFDSAAAQTRIQHYFNVATLDGFGQFSRPELSAISGA 264 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 I+YI+KTQ+ +P + PERE TLFID A R++LE+ RT+SG+R+ SLLK ID ++T Sbjct: 265 IAYIEKTQISERPPLMRPEREHEGGTLFIDPATRASLELARTMSGNRDGSLLKAIDRTVT 324 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G G RL AER+ +PLT +I RLDS+++ + L ++ LK PD+PR+LSRL + Sbjct: 325 GGGARLLAERLTAPLTSPKEIALRLDSVSWCLSEQTLCEALRLELKGVPDMPRALSRLAV 384 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 GRG P+D+ + G + I +L LP+EL A E ++K+P L L+D+L Sbjct: 385 GRGGPRDLGALACGFEAAGGIASLLDGALLPDELAAAREAIEKMPAGFAAHLDRALADEL 444 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P KRDGGF+R+G ++ LDE R+LRDQS+R+IA LQ Y EET IK+LKIKHNN LGYFI Sbjct: 445 PLLKRDGGFVREGYNSELDEMRALRDQSRRVIAGLQADYIEETGIKSLKIKHNNVLGYFI 504 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EVT++++ + E+K RFIHRQTM+N RFTT EL +LE++I NA + AL IEL FE Sbjct: 505 EVTANNSGAMTDTDEAKSRFIHRQTMANAMRFTTTELAELESKIANAADRALSIELAIFE 564 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L+ + ++S+ A+ +++ D+S ALA+LA+EQ YCRP +D+S +F + GRHP+VE Sbjct: 565 ELTAEAVAHADSIRAAASALSVFDVSTALAVLAEEQGYCRPHVDDSLSFNIVAGRHPVVE 624 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 + L+ Q++ PF+ANDCDLS D G +WLLTGPNMGGKSTFLRQNALI I+AQMGS+V Sbjct: 625 QALRCQAANPFVANDCDLSPQRDGGDGAIWLLTGPNMGGKSTFLRQNALIAILAQMGSFV 684 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA AHIG+VD+LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA S VILDEIGRGTA Sbjct: 685 PAGSAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQAGEHSLVILDEIGRGTA 744 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DGLSIAWA +EYLHE NRCR L ATHFHE+T LS+ L+R N T++V + + +IFLH Sbjct: 745 TFDGLSIAWAAVEYLHEKNRCRALFATHFHEMTALSEKLERLSNVTMRVKEWDNDVIFLH 804 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DMRLYYPEIQ 858 +V G AD SYG+QV +LAGLP V++RA D+L E + D+ L+ +Q Sbjct: 805 EVAKGAADRSYGVQVARLAGLPEAVVNRARDVLHQLEAGETSGKADRLIDDLPLFSVMLQ 864 Query: 859 TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ K + D + ++ DE++P AL +Y +K Sbjct: 865 QEKPKPQIQAKDSELANAVAAISPDELTPREALDLIYKLK 904 >gi|239830996|ref|ZP_04679325.1| DNA mismatch repair protein MutS [Ochrobactrum intermedium LMG 3301] gi|239823263|gb|EEQ94831.1| DNA mismatch repair protein MutS [Ochrobactrum intermedium LMG 3301] Length = 910 Score = 1014 bits (2622), Expect = 0.0, Method: Compositional matrix adjust. Identities = 470/880 (53%), Positives = 634/880 (72%), Gaps = 7/880 (0%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QYIEIK+ N DSL+FYRMGDFYELFFDDA+ AS LGITLTKRGKHLG+DIPMCG Sbjct: 25 TPMMEQYIEIKAANVDSLLFYRMGDFYELFFDDAVEASGALGITLTKRGKHLGEDIPMCG 84 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH A+ Y+QKLI G+R+A+CEQ+E P EAKKRG+KS+V+R+V+RLVTPGTLTE++LL Sbjct: 85 VPVHAADDYLQKLIAKGYRVAVCEQVEDPAEAKKRGSKSVVKRDVIRLVTPGTLTEEKLL 144 Query: 146 SPTDSNYLMAVARIRTE--WAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 P +N+LMA+ R R + A+AWIDISTG F+++ + DRL +D+MR+DPRE++ ++ Sbjct: 145 DPAQANFLMAMGRTRGDGALALAWIDISTGTFRVAETTPDRLFADVMRVDPRELVVADSA 204 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 E + +F+ +G QP FD + +E+RI Y+N+ T+D FG FS+ E +A + A Sbjct: 205 FHDEELRPVFDLVGKAVTPQPATLFDSAAAEARIQRYFNVATLDGFGQFSRSELSAISGA 264 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 I+YI+KTQ+ +P + PERE TLFID A R++LE+ RT+SG+R+ SLLK +D ++T Sbjct: 265 IAYIEKTQISERPPLMRPEREHEGGTLFIDPATRASLELARTMSGNRDGSLLKAVDRTVT 324 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G G RL AER+ +PLT+ +I RLDS+++F+ P L ++ LK D+PR+LSRL + Sbjct: 325 GGGARLLAERLTAPLTNPKEIALRLDSVSWFLSEPSLCEAMRAELKGVADMPRALSRLAV 384 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 GRG P+D+ + G + I NL LP+EL A + + +P L L+D+L Sbjct: 385 GRGGPRDLGSLARGFEAAHTIANLLESALLPDELAHARDAVSAMPAIFTAHLDRALADEL 444 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P KR+GGF+R G +A LDE R+LRDQS+R+IA LQ Y EET IK+LKIKHNN LGYFI Sbjct: 445 PLLKREGGFVRAGYNAELDEMRALRDQSRRVIAGLQADYIEETGIKSLKIKHNNVLGYFI 504 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EVT+++A + E+K RFIHRQTM+N RFTT EL +LE++I NA + AL IEL FE Sbjct: 505 EVTANNAGAMTDTDEAKGRFIHRQTMANAMRFTTTELAELESKIANAADRALSIELAVFE 564 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L+ + ++S+ A+ +A+ D+S ALA+LA EQ YCRP +D+S +F + GRHP+VE Sbjct: 565 ELTAEAVSHADSIRAAASALAVFDVSAALAVLADEQGYCRPQVDDSLSFNIVAGRHPVVE 624 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 + L++Q++ PF+ANDCDLS D +G +WLLTGPNMGGKSTFLRQNALI I+AQMGS+V Sbjct: 625 QALRRQAANPFVANDCDLSPQKDGGNGAIWLLTGPNMGGKSTFLRQNALIAILAQMGSFV 684 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA A IG+VD+LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA +S VILDEIGRGTA Sbjct: 685 PAGSAQIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQAGERSLVILDEIGRGTA 744 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DGLSIAWA +EYLHE NRCR L ATHFHE+T LS+ L+R N T++V + + ++FLH Sbjct: 745 TFDGLSIAWAAVEYLHEKNRCRALFATHFHEMTALSEKLERLSNVTMRVKEWDNDVVFLH 804 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DMRLYYPEIQ 858 +V G AD SYG+QV +LAGLP V++RA D+L E + D+ L+ +Q Sbjct: 805 EVAKGAADRSYGVQVARLAGLPEAVVNRARDVLHQLEAGETSGKADKLIDDLPLFSVVLQ 864 Query: 859 TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ K + D + + ++ DE++P AL +Y +K Sbjct: 865 QEKPKPQVQMKDSELAKAVSAISPDELTPREALDLIYKLK 904 >gi|121602103|ref|YP_989548.1| DNA mismatch repair protein [Bartonella bacilliformis KC583] gi|166232116|sp|A1UU95|MUTS_BARBK RecName: Full=DNA mismatch repair protein mutS gi|120614280|gb|ABM44881.1| DNA mismatch repair protein MutS [Bartonella bacilliformis KC583] Length = 914 Score = 1014 bits (2622), Expect = 0.0, Method: Compositional matrix adjust. Identities = 490/891 (54%), Positives = 654/891 (73%), Gaps = 13/891 (1%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QYIEIK++N D L+FYRMGDFYELFF+DA++AS+ LGITLT RGKHLGKDIPMCG Sbjct: 27 TPMMEQYIEIKAVNNDCLLFYRMGDFYELFFNDAIIASQALGITLTTRGKHLGKDIPMCG 86 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH+A+ Y+QKLI G+R+A+CEQ+E P EAKKRG+KS+V+R VVRLVTPGT+TE++LL Sbjct: 87 VPVHSADDYLQKLIACGYRVAVCEQMEDPAEAKKRGSKSIVQREVVRLVTPGTITEEKLL 146 Query: 146 SPTDSNYLMAVARIRT----EWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 PT +NYLM +ARI+T E+A++WIDISTGIF+++ S+H++L++DIMR+DP+E+I ++ Sbjct: 147 DPTRANYLMTLARIKTSDREEFALSWIDISTGIFRVTESHHEKLLTDIMRVDPQEVIVAD 206 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 L KSLF LG++ Q FD +E I +Y+ ++T++ +S+ E +A A Sbjct: 207 SLLHDKSLKSLFNVLGHIISPQSATLFDTITAEHDICNYFKLSTLEGVADYSRPELSAIA 266 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 AAI YI+KTQ+ ++P + PER++ ++TLFID+A R NLE++RT SG R+ SLLKTID + Sbjct: 267 AAIRYIEKTQITHRPPLMRPERQNEKATLFIDAATRLNLELIRTTSGQRDGSLLKTIDRT 326 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +TG G RL A+R+ SPLT I+ RLDSI FF++N L ILK PD+ R++SRL Sbjct: 327 VTGGGSRLLADRLISPLTSPEAIDKRLDSIAFFLRNTSLSEAAHLILKGGPDMSRAVSRL 386 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 +GRGEP+DIA IR G + L LP+E+ E +LP +L L+ L+D Sbjct: 387 ALGRGEPRDIATIRRGFEIISELNQLLNNKLLPQEISDVKEVFSRLPTALHIRLNQALTD 446 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 DLP KRDGGF+R LD+ R+LRD+S+RIIA LQ++YA+ET IK LKIKHNN LGY Sbjct: 447 DLPLLKRDGGFIRPNYHQELDKMRNLRDESRRIIAELQVRYAKETDIKTLKIKHNNVLGY 506 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 FIEVT+ AS L + ++K FIHRQT++N RFTT EL +LE+RI +A N + +ELE Sbjct: 507 FIEVTTLQASALTNNPQAKAHFIHRQTIANAMRFTTTELAELESRIAHAANHVITLELEI 566 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 F++L N II Q++ + S+ +A++D+S+ALA LA+EQ YCRPIIDNS F + GRHP+ Sbjct: 567 FDMLVNEIIAQADFIRKVSEALAVLDVSVALAYLAEEQGYCRPIIDNSLTFHITAGRHPV 626 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE+ L++Q+ +PF+ANDC+LS N+ +WLLTGPNMGGKSTFLRQNALI IMAQMGS Sbjct: 627 VEQALRKQAIEPFVANDCNLSAKNNHQYAAIWLLTGPNMGGKSTFLRQNALIAIMAQMGS 686 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA+ AHIG+VD+LFSRVG++D+LA GRSTFM+EM+ETA+ILN A++ S VILDEIGRG Sbjct: 687 FVPATSAHIGVVDRLFSRVGASDDLARGRSTFMMEMVETATILNHASSHSLVILDEIGRG 746 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 T+T DGLSIAWA +EYLHE N CR +LATHFHE+T L+K L R HN T++V + +IF Sbjct: 747 TSTFDGLSIAWAAVEYLHEVNHCRAILATHFHEMTALTKKLDRLHNVTMKVKNWEGNVIF 806 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY-----HHNQKDMRLYYPE 856 LH+V G AD SYG+QV KLAGLP VI+RA D+L E+ H D+ L+ Sbjct: 807 LHEVTEGAADRSYGVQVAKLAGLPEEVITRATDVLHQLEQSEMAGKGHKLIDDLPLF--N 864 Query: 857 IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTLEKYST 907 +QT + + + E +K ++ DE+SP AL+ LY +K LEK S+ Sbjct: 865 LQTISTTHKKTDKYDAIKEALKNIHPDELSPKDALEELYRLK--KLEKESS 913 >gi|163757822|ref|ZP_02164911.1| DNA mismatch repair protein [Hoeflea phototrophica DFL-43] gi|162285324|gb|EDQ35606.1| DNA mismatch repair protein [Hoeflea phototrophica DFL-43] Length = 916 Score = 1014 bits (2621), Expect = 0.0, Method: Compositional matrix adjust. Identities = 489/900 (54%), Positives = 651/900 (72%), Gaps = 16/900 (1%) Query: 11 LYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITL 70 L + Q+ E+ ++TPMM Q+IEIK+ NPDSL+FYRMGDFYELFF+DA+ ASR LGITL Sbjct: 12 LTTAQLATAESRATATPMMEQFIEIKAANPDSLLFYRMGDFYELFFEDAIDASRALGITL 71 Query: 71 TKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNV 130 TKRG+HLG+DIPMCGVPVH A+ Y+QKLI +G R+A+CEQ E P EAKKRG+KS+VRR+V Sbjct: 72 TKRGQHLGQDIPMCGVPVHAADDYLQKLISLGFRVAVCEQTEDPAEAKKRGSKSVVRRDV 131 Query: 131 VRLVTPGTLTEDQLLSPTDSNYLMAVARIR----TEWAIAWIDISTGIFKISTSNHDRLI 186 RLVTPGTLTE++LL P+ SN+LMA+ARI+ ++ +AWIDISTG F ++ S RL+ Sbjct: 132 TRLVTPGTLTEEKLLDPSQSNFLMALARIKGSGEAQFGLAWIDISTGAFHVAESRLARLL 191 Query: 187 SDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTV 246 +DI R++PRE+I +E + + L + LG VA QP V FD + +E RI +Y++ ++ Sbjct: 192 ADIARVEPRELILAENVFHDPDIRPLVDQLGRVATPQPGVLFDSATAEGRITRFYDLGSL 251 Query: 247 DTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL 306 D FGSFS+ E AAAA I+Y++KTQ+ +P +G PERE + LFID A R++LE++RTL Sbjct: 252 DGFGSFSRAEMAAAAAVIAYVEKTQISERPPLGRPERESDGARLFIDPATRASLELVRTL 311 Query: 307 SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK 366 SG+R+ SL+K ID S+T GGR E + +PLTD IN RLD +++ I + L + +++ Sbjct: 312 SGARQGSLIKAIDRSVTAGGGRKLGEWLMAPLTDPAAINARLDGVSYLIGDSTLTDALRQ 371 Query: 367 ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK 426 LK D+PR+LSRL + RG P+D+ I G+R+ I NLF ++PE L A L+ Sbjct: 372 ALKGVADMPRALSRLALNRGGPRDLGAILAGVRAAGEIANLFDGMEVPEHLAAAASCLRN 431 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 LP+ +E LS+ L D+LP KRDGGF+R GA + LDE R+LRDQS+R+IA LQL YAEET Sbjct: 432 LPKEIEARLSATLGDELPLLKRDGGFVRTGASSELDELRALRDQSRRVIAGLQLSYAEET 491 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 +++LKIKHNN LGYFIEVT+ +A L + E+K ++IHRQTM+N RFTT EL DLE R Sbjct: 492 GVRSLKIKHNNVLGYFIEVTALNAGPLTEGDEAKAKYIHRQTMANAMRFTTTELSDLETR 551 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 I NA AL IEL +F+ L ++ Q++++ A+ +++ID++ ALA LA+EQ YCRP + Sbjct: 552 IANAAGEALAIELAAFDELVLLVVSQADAIKAAADALSVIDVTAALAELAQEQGYCRPKV 611 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP-NDKNSGKLWLLTGPNMGGKST 665 D+S F + GRHP+VE+ L++Q+ +PF+ANDCDLS P + G +WLLTGPNMGGKST Sbjct: 612 DSSLAFEISAGRHPVVEQALRRQAEQPFVANDCDLSPPEGSGDGGAIWLLTGPNMGGKST 671 Query: 666 FLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILN 725 FLRQNALI +MAQMGS+VPA AHIG+VD+LFSRVG++D+LA GRSTFMVEM+ETA+ILN Sbjct: 672 FLRQNALIAVMAQMGSFVPAGSAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILN 731 Query: 726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRF 785 QA S VILDEIGRGTAT DGLSIAWA +E+LH NRCR L ATHFHELT LS+ L R Sbjct: 732 QAGPHSLVILDEIGRGTATFDGLSIAWAAVEHLHAQNRCRALFATHFHELTALSEKLPRL 791 Query: 786 HNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH 845 NAT++V + ++FLH+V PG AD SYGIQV +LAGLP+ V+ RA ++L E Sbjct: 792 SNATMKVKEWEGDVVFLHEVGPGAADRSYGIQVARLAGLPDAVVVRAREVLDLLESSERE 851 Query: 846 NQK-----DMRLY-YPEI-QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 N D+ L+ P + + + S++D E LN D+M+P AL LY +K Sbjct: 852 NPAARLVDDLPLFAMPAVREPAKPAKGPSESDAYLGE----LNPDDMTPREALDALYELK 907 >gi|23501058|ref|NP_697185.1| DNA mismatch repair protein MutS [Brucella suis 1330] gi|161618135|ref|YP_001592022.1| DNA mismatch repair protein [Brucella canis ATCC 23365] gi|254705326|ref|ZP_05167154.1| DNA mismatch repair protein MutS [Brucella suis bv. 3 str. 686] gi|260567215|ref|ZP_05837685.1| DNA mismatch repair protein mutS [Brucella suis bv. 4 str. 40] gi|261756037|ref|ZP_05999746.1| DNA mismatch repair protein mutS [Brucella suis bv. 3 str. 686] gi|44888220|sp|Q8G310|MUTS_BRUSU RecName: Full=DNA mismatch repair protein mutS gi|189030704|sp|A9M792|MUTS_BRUC2 RecName: Full=DNA mismatch repair protein mutS gi|23346925|gb|AAN29100.1| DNA mismatch repair protein MutS [Brucella suis 1330] gi|161334946|gb|ABX61251.1| DNA mismatch repair protein MutS [Brucella canis ATCC 23365] gi|260156733|gb|EEW91813.1| DNA mismatch repair protein mutS [Brucella suis bv. 4 str. 40] gi|261745790|gb|EEY33716.1| DNA mismatch repair protein mutS [Brucella suis bv. 3 str. 686] Length = 910 Score = 1013 bits (2619), Expect = 0.0, Method: Compositional matrix adjust. Identities = 470/880 (53%), Positives = 634/880 (72%), Gaps = 7/880 (0%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QYIEIK+ N DSL+FYRMGDFYELFFDDA+ AS LGITLTKRGKHLG+DIPMCG Sbjct: 25 TPMMEQYIEIKAANVDSLLFYRMGDFYELFFDDAVAASAALGITLTKRGKHLGEDIPMCG 84 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH A+ Y+QKLI G+R+A+CEQ+E P EAKKRG+KS+V+R+V+RLVTPGTLTE++LL Sbjct: 85 VPVHAADDYLQKLIAKGYRVAVCEQVEDPAEAKKRGSKSVVKRDVIRLVTPGTLTEEKLL 144 Query: 146 SPTDSNYLMAVARIRTE--WAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 P +N+LMA+ R R + A+AWIDISTG F+++ + DRL +DIMR+DPRE++ ++ Sbjct: 145 DPAQANFLMAMGRTRGDGALALAWIDISTGTFRVAETTPDRLFADIMRVDPRELVVADSA 204 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 E + +F+ +G QP FD + +++RI Y+N+ T+D FG FS+ E +A + A Sbjct: 205 FHDEELRPVFDLIGKAVTPQPATLFDSAAAQTRIQHYFNVATLDGFGQFSRPELSAISGA 264 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 I+YI+KTQ+ +P + PERE TLFID A R++LE+ RT+SG+R+ SLLK ID ++T Sbjct: 265 IAYIEKTQISERPPLMRPEREHEGGTLFIDPATRASLELARTMSGNRDGSLLKAIDRTVT 324 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G G RL AER+ +PLT +I RLDS+++ + L ++ LK PD+PR+LSRL + Sbjct: 325 GGGARLLAERLTAPLTSPKEIALRLDSVSWCLSEQTLCEALRLELKGVPDMPRALSRLAV 384 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 GRG P+D+ + G + I +L LP+EL A E ++K+P L L+D+L Sbjct: 385 GRGGPRDLGALACGFEAAGGIASLLDGALLPDELAAAREAIEKMPAGFAAHLDRALADEL 444 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P KRDGGF+R+G ++ LDE R+LRDQS+R+IA LQ Y EET IK+LKIKHNN LGYFI Sbjct: 445 PLLKRDGGFVREGYNSELDEMRALRDQSRRVIAGLQADYIEETGIKSLKIKHNNVLGYFI 504 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EVT++++ + E+K RFIHRQTM+N RFTT EL +LE++I NA + AL IEL FE Sbjct: 505 EVTANNSGAMTDTDEAKSRFIHRQTMANAMRFTTTELAELESKIANAADRALSIELAIFE 564 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L+ + ++S+ A+ +++ D+S ALA+LA+E+ YCRP +D+S +F + GRHP+VE Sbjct: 565 ELTAEAVAHADSIRAAASALSVFDVSTALAVLAEERGYCRPHVDDSLSFNIVAGRHPVVE 624 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 + L++Q++ PF+ANDCDLS D G +WLLTGPNMGGKSTFLRQNALI I+AQMGS+V Sbjct: 625 QALRRQAANPFVANDCDLSPQRDGGDGAIWLLTGPNMGGKSTFLRQNALIAILAQMGSFV 684 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA AHIG+VD+LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA S VILDEIGRGTA Sbjct: 685 PAGSAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQAGEHSLVILDEIGRGTA 744 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DGLSIAWA +EYLHE NRCR L ATHFHE+T LS+ L+R N T++V + + +IFLH Sbjct: 745 TFDGLSIAWAAVEYLHEKNRCRALFATHFHEMTALSEKLERLSNVTMRVKEWDNDVIFLH 804 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DMRLYYPEIQ 858 +V G AD SYG+QV +LAGLP V++RA D+L E + D+ L+ +Q Sbjct: 805 EVAKGAADRSYGVQVARLAGLPEAVVNRARDVLHQLEAGETSGKADRLIDDLPLFSVMLQ 864 Query: 859 TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ K + D + ++ DE++P AL +Y +K Sbjct: 865 QEKPKPQIQAKDSELANAVAAISPDELTPREALDLIYKLK 904 >gi|294851546|ref|ZP_06792219.1| DNA mismatch repair protein MutS [Brucella sp. NVSL 07-0026] gi|294820135|gb|EFG37134.1| DNA mismatch repair protein MutS [Brucella sp. NVSL 07-0026] Length = 910 Score = 1012 bits (2617), Expect = 0.0, Method: Compositional matrix adjust. Identities = 470/880 (53%), Positives = 633/880 (71%), Gaps = 7/880 (0%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QYIEIK+ N DSL+FYRMGDFYELFFDDA+ AS LGITLTKRGKHLG+DIPMCG Sbjct: 25 TPMMEQYIEIKAANVDSLLFYRMGDFYELFFDDAVAASAALGITLTKRGKHLGEDIPMCG 84 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH A+ Y+QKLI G+R+A+CEQ+E P EAKKRG+KS+V+R+V+RLVTPGTLTE++LL Sbjct: 85 VPVHAADDYLQKLIAKGYRVAVCEQVEDPAEAKKRGSKSVVKRDVIRLVTPGTLTEEKLL 144 Query: 146 SPTDSNYLMAVARIRTE--WAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 P +N+LMA+ R R + A+AWIDISTG F+++ + DRL +DIMR+DPRE++ ++ Sbjct: 145 DPAQANFLMAMGRTRGDGALALAWIDISTGTFRVAETTPDRLFADIMRVDPRELVVADSA 204 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 E + +F+ +G QP FD + +++RI Y+N+ T+D FG FS+ E +A + A Sbjct: 205 FHDEELRPVFDLIGKAVTPQPATLFDSAAAQTRIQHYFNVATLDGFGQFSRPELSAISGA 264 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 I+YI+KTQ+ +P + PERE TLFID A R++LE+ RT+SG+R+ SLLK ID ++T Sbjct: 265 IAYIEKTQISERPPLMRPEREHEGGTLFIDPATRASLELARTMSGNRDGSLLKAIDRTVT 324 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G G RL AER+ +PLT +I RLDS+++ + L ++ LK PD+PR+LSRL + Sbjct: 325 GGGARLLAERLTAPLTSPKEIALRLDSVSWCLSEQTLCEALRLELKGVPDMPRALSRLAV 384 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 GRG P+D+ + G + I +L LP+EL A E ++K+P L L+D+L Sbjct: 385 GRGGPRDLGALACGFEAAGGIASLLDGALLPDELAAAREAIEKMPAGFAAHLDRALADEL 444 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P KRDGGF+R+G ++ LDE R+LRDQS+R+IA LQ Y EET IK+LKIKHNN LGYFI Sbjct: 445 PLLKRDGGFVREGYNSELDEMRALRDQSRRVIAGLQADYIEETGIKSLKIKHNNVLGYFI 504 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EVT++++ + E+K RFIHRQTM+N RFTT EL +LE++I NA + AL IEL FE Sbjct: 505 EVTANNSGAMTDTDEAKSRFIHRQTMANAMRFTTTELAELESKIANAADRALSIELAIFE 564 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L+ + ++S+ A+ +++ D+S ALA+LA+EQ YCRP +D+S +F + GRHP+VE Sbjct: 565 ELTAEAVAHADSIRAAASALSVFDVSTALAVLAEEQGYCRPHVDDSLSFNIVAGRHPVVE 624 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 + L++ ++ PF+ANDCDLS D G +WLLTGPNMGGKSTFLRQNALI I+AQMGS+V Sbjct: 625 QALRRHAANPFVANDCDLSPQRDGGDGAIWLLTGPNMGGKSTFLRQNALIAILAQMGSFV 684 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA AHIG+VD+LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA S VILDEIGRGTA Sbjct: 685 PAGSAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQAGEHSLVILDEIGRGTA 744 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DGLSIAWA +EYLHE NRCR L ATHFHE+T LS+ L+R N T++V + + +IFLH Sbjct: 745 TFDGLSIAWAAVEYLHEKNRCRALFATHFHEMTALSEKLERLSNVTMRVKEWDNDVIFLH 804 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DMRLYYPEIQ 858 +V G AD SYG+QV +LAGLP V++RA D+L E + D+ L+ +Q Sbjct: 805 EVAKGAADRSYGVQVARLAGLPEAVVNRARDVLHQLEAGETSGKADRLIDDLPLFSVMLQ 864 Query: 859 TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ K + D + ++ DE++P AL +Y +K Sbjct: 865 QEKPKPQIQAKDSELANAVAAISPDELTPREALDLIYKLK 904 >gi|319406497|emb|CBI80138.1| DNA mismatch repair protein MutS [Bartonella sp. 1-1C] Length = 911 Score = 1012 bits (2616), Expect = 0.0, Method: Compositional matrix adjust. Identities = 489/881 (55%), Positives = 645/881 (73%), Gaps = 9/881 (1%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QYIEIK++N DSL+FYRMGDFYELFF+DA+ A++ LGITLT RGKHLG+DIPMCG Sbjct: 27 TPMMEQYIEIKAVNSDSLLFYRMGDFYELFFNDAIEAAQALGITLTTRGKHLGQDIPMCG 86 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH+A+ Y+QKLI G+R+A+CEQIE P EAKKRG+KS+V+R+VVRL+TPGT+TE++LL Sbjct: 87 VPVHSADDYLQKLIACGYRVAVCEQIEDPAEAKKRGSKSVVQRDVVRLITPGTITEEKLL 146 Query: 146 SPTDSNYLMAVARIRT----EWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 P +NYLM +AR T E+A+AWIDISTGIF+++ S H+ L++DIMR+DP+E+I ++ Sbjct: 147 DPARANYLMTLARTITRSKEEYALAWIDISTGIFRVTESRHENLLTDIMRVDPQEVIVAD 206 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 K+LF LGN+ QP F+ + +E I Y+ ++T+ +S E +A A Sbjct: 207 SFFHDKSQKALFNVLGNIISPQPENLFEITTAERDICHYFKLSTLKGIADYSHPELSAIA 266 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 AAI YI+KTQ+ ++P + PER++ +TLFID+A R +LE++RT SG R+ SLLK ID + Sbjct: 267 AAIRYIEKTQITHRPPLMRPERQNESTTLFIDAATRFSLELIRTTSGQRDGSLLKAIDRT 326 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +TG G RL +R+ SPLT I+ RLDSI+FF++NP L I+ ILK PD+PR++SRL Sbjct: 327 VTGGGSRLLVDRLISPLTTPVAIDKRLDSIDFFLRNPSLAEAIKLILKGGPDMPRAVSRL 386 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDL-PEELRGAVEKLKKLPQSLEKTLSSMLS 440 +GRG P+D+ I+ G IN +N L N+L P+E+ E LP +L L L+ Sbjct: 387 ALGRGGPRDMGTIQRGFEI-INEINQILNNELFPQEINDVREVFSHLPTALHFQLEQALA 445 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 DDLP KRDGGF+R LDE R+LRD+S+ +IA LQ +YA+ET IK LKIKHNN LG Sbjct: 446 DDLPLLKRDGGFIRPHYHQELDEMRNLRDESRCVIAKLQAQYAKETDIKTLKIKHNNILG 505 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 YFIEVT+ AS L ++K RFIHRQTM+N RFTT EL +LE+RI +A N L +ELE Sbjct: 506 YFIEVTNLQASALTNTPQAKARFIHRQTMANAMRFTTTELAELESRIAHAANHVLTLELE 565 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F+ L + I EQ + + AS+ +AI+D+S+ALA LA+EQ YCRP +D+S F + GRHP Sbjct: 566 IFDKLVDEITEQIDFIRQASEALAILDVSVALAHLAEEQGYCRPKVDHSLAFHITAGRHP 625 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE+ L++Q ++PF+AN+CDLS N +WLLTGPNMGGKSTFLRQNALI IMAQMG Sbjct: 626 VVEQALRKQVAEPFVANNCDLSAQNKHLDADIWLLTGPNMGGKSTFLRQNALIAIMAQMG 685 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA+ AHIG+VD+LFSRVG++D+LA GRSTFM+EM+ETA+ILN A+N S VILDEIGR Sbjct: 686 SFVPATSAHIGVVDRLFSRVGASDDLARGRSTFMMEMVETATILNHASNHSLVILDEIGR 745 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GT+T DGLSIAWAT+E+LHE NRCR +LATHFHE+T L+K L R HN T++V + N +I Sbjct: 746 GTSTFDGLSIAWATVEHLHEINRCRAILATHFHEMTALTKKLNRLHNVTMKVKNWNSDVI 805 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL-YYPEIQT 859 FLH++ G AD SYG+QV KLAGLP TVISRA D+L+ E+ + D + P Sbjct: 806 FLHEITKGTADRSYGVQVAKLAGLPATVISRATDVLRQLEQGEMSGKGDKLIDNLPLFSL 865 Query: 860 KESKNNLSKNDKLFVEK--IKCLNLDEMSPLTALKTLYAVK 898 K + KNDK K +K ++ DE+SP AL+ LY +K Sbjct: 866 KATSLTNEKNDKCCAIKDALKNIHPDELSPKAALEELYRLK 906 >gi|319403583|emb|CBI77165.1| DNA mismatch repair protein MutS [Bartonella rochalimae ATCC BAA-1498] Length = 911 Score = 1011 bits (2615), Expect = 0.0, Method: Compositional matrix adjust. Identities = 489/881 (55%), Positives = 645/881 (73%), Gaps = 9/881 (1%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QYIEIK++N DSL+FYRMGDFYELFF+DA+ A++ LGITLT RGKHLG+DIPMCG Sbjct: 27 TPMMEQYIEIKAVNSDSLLFYRMGDFYELFFNDAIEAAQALGITLTTRGKHLGQDIPMCG 86 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH+A+ Y+QKLI G+R+A+CEQIE P EAKKRG+KS+V+R+VVRL+TPGT+TE++LL Sbjct: 87 VPVHSADDYLQKLIACGYRVAVCEQIEDPAEAKKRGSKSVVQRDVVRLITPGTITEEKLL 146 Query: 146 SPTDSNYLMAVARIRT----EWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 P +NYLM +AR T E+A++WIDISTGIF+++ S H+ L++DIMR+DP+E+I ++ Sbjct: 147 DPARANYLMTLARTTTRSKEEYALSWIDISTGIFRVTESRHENLLTDIMRVDPQEVIVAD 206 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 K+LF LGN+ QP F+ + +E I Y+ ++T+ +S E +A A Sbjct: 207 SFFHDKSQKALFNVLGNIISPQPENLFETTTAERDICLYFKLSTLKGIADYSHPELSAIA 266 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 AAI YI+KTQ+ ++P + PER++ +TLFID+A R +LE++RT SG R+ SLLK ID + Sbjct: 267 AAIRYIEKTQITHRPPLMRPERQNESTTLFIDAATRFSLELIRTTSGQRDGSLLKAIDRT 326 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +TG G RL +R+ SPLT I+ RLDSI+FF++NP L I+ ILK PD+PR++SRL Sbjct: 327 VTGGGSRLLVDRLISPLTTPVAIDKRLDSIDFFLRNPSLAEAIKLILKGGPDMPRAVSRL 386 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDL-PEELRGAVEKLKKLPQSLEKTLSSMLS 440 +GRG P+D+ I+ G IN +N L N+L P+E+ E LP +L L L+ Sbjct: 387 ALGRGGPRDMGTIQRGFEI-INEINQILNNELLPQEINDVREVFSHLPTALHFQLEQALA 445 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 DDLP KRDGGF+R LDE R+LRD+S+ +IA LQ +YA+ET IK LKIKHNN LG Sbjct: 446 DDLPLLKRDGGFIRPHYHQELDEMRNLRDESRCVIAKLQAQYAKETDIKTLKIKHNNILG 505 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 YFIEVT+ AS L ++K RFIHRQTM+N RFTT EL +LE+RI +A N L +ELE Sbjct: 506 YFIEVTNLQASALTNTPQAKARFIHRQTMANAMRFTTTELAELESRIAHAANHVLTLELE 565 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F+ L + I +Q + + AS+ +AI+D+S+ALA LA+EQ YCRP +D+S F + GRHP Sbjct: 566 IFDKLVDEITQQIDFIRQASEALAILDVSVALAHLAEEQGYCRPKVDHSLTFHITAGRHP 625 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE+ L++Q+++PF+AN+CDLS N +WLLTGPNMGGKSTFLRQNALI IMAQMG Sbjct: 626 VVEQALRKQAAEPFVANNCDLSAQNKHLDADIWLLTGPNMGGKSTFLRQNALIAIMAQMG 685 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA+ AHIGIVD+LFSRVG++D+LA GRSTFM+EM+ETA+ILN A+N S VILDEIGR Sbjct: 686 SFVPATSAHIGIVDRLFSRVGASDDLARGRSTFMMEMVETATILNHASNHSLVILDEIGR 745 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GT+T DGLSIAWAT+E+LHE NRCR +LATHFHE+T L+K L R HN T++V + N +I Sbjct: 746 GTSTFDGLSIAWATVEHLHEINRCRAILATHFHEMTALTKKLNRLHNVTMKVKNWNSDVI 805 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL-YYPEIQT 859 FLH+V G AD SYG+QV KLAGLP TVISRA D+L E+ + D + P Sbjct: 806 FLHEVTKGTADRSYGVQVAKLAGLPATVISRATDVLHQLEQGEMSGKGDKLIDNLPLFSL 865 Query: 860 KESKNNLSKNDKLFVEK--IKCLNLDEMSPLTALKTLYAVK 898 K + KND+ K +K +N DE+SP AL+ LY +K Sbjct: 866 KATSLTNEKNDQCCAIKDALKNINPDELSPKAALEELYRLK 906 >gi|110636355|ref|YP_676563.1| DNA mismatch repair protein [Mesorhizobium sp. BNC1] gi|123161485|sp|Q11B27|MUTS_MESSB RecName: Full=DNA mismatch repair protein mutS gi|110287339|gb|ABG65398.1| DNA mismatch repair protein MutS [Chelativorans sp. BNC1] Length = 881 Score = 1011 bits (2614), Expect = 0.0, Method: Compositional matrix adjust. Identities = 481/883 (54%), Positives = 640/883 (72%), Gaps = 10/883 (1%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QYIEIK+ + D L+FYRMGDFYELFFDDA +ASR LGITLTKRGKH G+DIPMCGVP Sbjct: 1 MMQQYIEIKAAHADCLLFYRMGDFYELFFDDAEVASRALGITLTKRGKHRGEDIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 VH A+ Y+QKLI +GHR+A+CEQ+E P EAKKRG K+++RR+VVRLVTPGT+TE++LL P Sbjct: 61 VHAADDYLQKLIALGHRVAVCEQMEDPAEAKKRGYKAVMRRDVVRLVTPGTITEEKLLDP 120 Query: 148 TDSNYLMAVARIRT--EWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 +++NYLMA+ R++ E A+AWIDISTGIF+++++ DRL++DI RIDPRE+I +E Sbjct: 121 SEANYLMALGRVKGSEELALAWIDISTGIFRVASTAPDRLLADISRIDPRELIVAEPVYH 180 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAIS 265 AE + +F+ LG V V QP VFFD + + R++ +Y + T+D FG FS+ E +A A A++ Sbjct: 181 DAELRPVFDMLGRVVVPQPPVFFDSASAAMRLSRFYGVATLDGFGRFSRAELSAIAGAVA 240 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y++KTQ +P + PER++ +LFID + R+NLE+ RTLS SRE SLLK ID ++TGA Sbjct: 241 YVEKTQKAERPPLAAPERDEEGKSLFIDPSTRANLELARTLSSSREGSLLKAIDRTVTGA 300 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 G RL AER+ SPLTD I RLDS++FF+ P L + ++ LK PD+ R+LSRL + R Sbjct: 301 GSRLLAERLMSPLTDPQVIAERLDSVSFFLDEPGLRDRLRAFLKGVPDISRALSRLALNR 360 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPT 445 G P+D+ + G+ + +L + P E+ A+ L LP +L L L+DDLP Sbjct: 361 GGPRDLGALSAGLEAAAAAADLLRGKEAPSEISAALSTLLSLPAALVSHLDRALADDLPL 420 Query: 446 FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEV 505 KRDGGF+R G DA LDE R+LRDQS+R+IA ++ EET I++LKI+HNN LGY+IEV Sbjct: 421 LKRDGGFVRGGYDAELDEMRALRDQSRRVIAGMERDLIEETGIRSLKIRHNNILGYYIEV 480 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEIL 565 +++A L E+K RFIHRQTM+N RFTT EL DLE RI NA + AL IEL FE L Sbjct: 481 RANNAGALNGTDEAKARFIHRQTMANAMRFTTTELADLETRIANAADRALAIELAVFERL 540 Query: 566 SNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKT 625 ++ SE L A+Q +A++D+S ALA LA+ ++YCRP++D S +F ++ GRHP+VE+ Sbjct: 541 VGEVVAASEPLRAAAQALAVLDVSAALACLAEGEDYCRPVVDGSLDFHIEGGRHPVVEQA 600 Query: 626 LKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPA 685 L++Q +PF+ANDCDLS + +G +WLLTGPNMGGKSTFLRQNALI ++AQMGS+VPA Sbjct: 601 LRKQLGEPFVANDCDLSPAEGEKAGAIWLLTGPNMGGKSTFLRQNALIAVLAQMGSFVPA 660 Query: 686 SYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATL 745 A IG+VD+LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA +S VILDEIGRGTAT Sbjct: 661 RSARIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQAGERSLVILDEIGRGTATF 720 Query: 746 DGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKV 805 DGLSIAWA +EYLHE NRCR L ATHFHE+T L++ L R N T++V + +IFLH+V Sbjct: 721 DGLSIAWAAVEYLHEKNRCRALFATHFHEMTALTEKLSRLVNVTMRVKEFEGEVIFLHEV 780 Query: 806 IPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DMRLYYPEIQTK 860 G AD SYGIQV +LAGLP TV+ RA D+L E+ + D+ L+ ++ + Sbjct: 781 ARGAADRSYGIQVARLAGLPQTVVERARDVLHRLEEGETGTKAARIVDDLPLFSAAMRQE 840 Query: 861 ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTLE 903 K SK E++ LN D+M+P AL+ LY +K +E Sbjct: 841 PPK---SKAPDHLREELTALNPDDMTPREALEVLYKLKRLVIE 880 >gi|153007504|ref|YP_001368719.1| DNA mismatch repair protein MutS [Ochrobactrum anthropi ATCC 49188] gi|189083162|sp|A6WV86|MUTS_OCHA4 RecName: Full=DNA mismatch repair protein mutS gi|151559392|gb|ABS12890.1| DNA mismatch repair protein MutS [Ochrobactrum anthropi ATCC 49188] Length = 910 Score = 1009 bits (2609), Expect = 0.0, Method: Compositional matrix adjust. Identities = 469/880 (53%), Positives = 636/880 (72%), Gaps = 7/880 (0%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QYIEIK+ N DSL+FYRMGDFYELFFDDA+ AS LGITLTKRGKHLG+DIPMCG Sbjct: 25 TPMMEQYIEIKAANVDSLLFYRMGDFYELFFDDAVEASAALGITLTKRGKHLGEDIPMCG 84 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH A+ Y+QKLI G+R+A+CEQ+E P EAKKRG+KS+V+R+V+RLVTPGTLTE++LL Sbjct: 85 VPVHAADDYLQKLIAKGYRVAVCEQVEDPAEAKKRGSKSVVKRDVIRLVTPGTLTEEKLL 144 Query: 146 SPTDSNYLMAVARIRTE--WAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 P+++N+LMA+ R R + A+AWIDISTG F+++ + DRL +D+MR+DPRE++ ++ Sbjct: 145 DPSEANFLMAMGRTRGDGALALAWIDISTGTFRVAETTPDRLFADVMRVDPRELVVADSA 204 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 E + +F+ +G QP FD + +E+RI Y+N+ T+D FG FS+ E +A + A Sbjct: 205 FHDEELRPVFDLVGKAVTPQPATLFDSAAAETRIQRYFNVATLDGFGQFSRPELSAISGA 264 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 I+YI+KTQ+ +P + PERE TLFID A R++LE+ RT+SG+R+ SLLK +D ++T Sbjct: 265 IAYIEKTQISERPPLMRPEREHEGGTLFIDPATRASLELARTMSGNRDGSLLKAVDRTVT 324 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G G RL AER+ +PLT+ +I RLDS+++F+ L ++ LK PD+PR LSRL + Sbjct: 325 GGGARLLAERLTAPLTNPKEIALRLDSVSWFLSEQSLCEAMRAELKGVPDMPRGLSRLAV 384 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 GRG P+D+ + G + I +L LP+EL A + + +P L L+D+L Sbjct: 385 GRGGPRDLGSLARGFEAAHVIASLLESALLPDELAHARDAVSAMPAIFTAHLDRALADEL 444 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P KRDGGF+R G ++ LDE R+LRDQS+R+IA LQ Y EET IK+LKIKHNN LGYFI Sbjct: 445 PLLKRDGGFVRGGYNSELDEMRALRDQSRRVIAGLQANYIEETGIKSLKIKHNNVLGYFI 504 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EVT+++A + E+K RFIHRQTM+N RFTT EL +LE++I NA + AL IEL FE Sbjct: 505 EVTANNAGAMTDTDEAKSRFIHRQTMANAMRFTTTELAELESKIANAADRALSIELAVFE 564 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L+ + ++S+ A+ +A+ D+S +LA+LA+EQ YCRP +D+S +F + GRHP+VE Sbjct: 565 ELTAEAVSHADSIRAAASALAVFDVSASLAVLAEEQGYCRPQVDDSLSFNIVAGRHPVVE 624 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 + L++Q++ PF+ANDCDLS D +G +WLLTGPNMGGKSTFLRQNALI IMAQMGS+V Sbjct: 625 QALRRQAANPFVANDCDLSPQADGGNGAIWLLTGPNMGGKSTFLRQNALIAIMAQMGSFV 684 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA A IG+VD+LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA +S VILDEIGRGTA Sbjct: 685 PAGSAKIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQAGERSLVILDEIGRGTA 744 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DGLSIAWA +EYLHE NRCR L ATHFHE+T LS+ L+R N T++V + + ++FLH Sbjct: 745 TFDGLSIAWAAVEYLHEKNRCRALFATHFHEMTALSEKLERLSNVTMRVKEWDNDVVFLH 804 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DMRLYYPEIQ 858 +V G AD SYG+QV +LAGLP V++RA D+L E + D+ L+ +Q Sbjct: 805 EVAKGAADRSYGVQVARLAGLPEAVVNRARDVLHQLEAGETSGKADKLIDDLPLFSVVLQ 864 Query: 859 TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ K + D + + ++ DE++P AL +Y +K Sbjct: 865 QEKPKLQVQGKDSDLTKAVSAISPDELTPREALDLIYKLK 904 >gi|49474920|ref|YP_032961.1| DNA mismatch repair protein [Bartonella henselae str. Houston-1] gi|81696206|sp|Q6G542|MUTS_BARHE RecName: Full=DNA mismatch repair protein mutS gi|49237725|emb|CAF26915.1| DNA mismatch repair protein mutS [Bartonella henselae str. Houston-1] Length = 914 Score = 1002 bits (2590), Expect = 0.0, Method: Compositional matrix adjust. Identities = 484/883 (54%), Positives = 645/883 (73%), Gaps = 13/883 (1%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QYIEIK++N D L+FYRMGDFYELFF+DA+ A++ LGITLT RGKHLG+DIPMCG Sbjct: 27 TPMMEQYIEIKAVNSDCLLFYRMGDFYELFFNDAIEAAQVLGITLTTRGKHLGEDIPMCG 86 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVHTA+ Y+QKLI G+R+A+CEQ E P EAKKRG+KS+VRR+VVRLVTPGTLTE++LL Sbjct: 87 VPVHTADDYLQKLISCGYRVAVCEQTEDPAEAKKRGSKSIVRRDVVRLVTPGTLTEEKLL 146 Query: 146 SPTDSNYLMAVARIRT----EWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 PT +NYLM +ARI+T E+A++WIDISTGIF+++ S ++L++DIMR+DP+EII ++ Sbjct: 147 DPTRANYLMTLARIKTSDGEEFALSWIDISTGIFRVTESRLEKLLADIMRVDPQEIIVAD 206 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 +KSLF L + Q FD +E I Y+ ++T++ +S+ E +A A Sbjct: 207 SFFHDKSHKSLFNVLDCIVSPQHASLFDVITAERDICSYFKLSTLEGIADYSRPELSAIA 266 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 AAI YI+KTQ+ ++P + PER++ +TLFID+A R +LE++RT SG R+ SLLK ID + Sbjct: 267 AAIRYIEKTQITHRPPLMRPERQNESATLFIDAATRLSLELVRTTSGQRDGSLLKAIDRT 326 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +TG G RL +R+ +PLT + I+ RLDSI FF++N L I+ ILK PD+PR++SRL Sbjct: 327 VTGGGSRLLLDRLIAPLTTPSAIDKRLDSIAFFLRNTSLAEDIKLILKGGPDMPRAVSRL 386 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDL-PEELRGAVEKLKKLPQSLEKTLSSMLS 440 +GRG P+D+A I+ G I L+ L N+L P+E+ + LP +L L L+ Sbjct: 387 ALGRGGPRDMASIQRGFEI-IRELHQLLSNELLPQEISDVQQIFSHLPTALHLRLEQALA 445 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 DDLP KRDGGF+R LDE R+LRD+S+R+IA LQ +YA+ET IK LKIKHNN LG Sbjct: 446 DDLPLLKRDGGFIRPHYHKELDEMRTLRDESRRVIAELQAQYAQETDIKTLKIKHNNILG 505 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 YFIEVT+ A+ L ++K RFIHRQTM+N RFTT EL +LE+RI +A N AL +ELE Sbjct: 506 YFIEVTNLQATALTNTPQAKARFIHRQTMANAMRFTTTELAELESRIAHAANHALTLELE 565 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F+ L + I EQ + + A++ +A++D+S+ALA LA+EQ YCRP ID S F + GRHP Sbjct: 566 IFDTLVHEITEQVDFIRKAAESLAVLDVSVALAHLAEEQGYCRPKIDQSLTFCITAGRHP 625 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE+ L++Q+++PF+AN+CDLS + +WLLTGPNMGGKSTFLRQNALI IMAQMG Sbjct: 626 VVEQALRKQAAEPFVANNCDLSLQENHQYAAIWLLTGPNMGGKSTFLRQNALIAIMAQMG 685 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA+ AHIG+VD+LFSRVG++D+LA GRSTFM+EM+ETA+ILN AT S VILDEIGR Sbjct: 686 SFVPATSAHIGVVDRLFSRVGASDDLARGRSTFMMEMVETATILNHATQHSLVILDEIGR 745 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GT+T DGLSIAWAT+EYLHE N CR +LATHFHE+T L++ L R HN T++V + + +I Sbjct: 746 GTSTFDGLSIAWATVEYLHEVNHCRAILATHFHEMTALTEKLDRLHNVTMKVKNWDGDVI 805 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK-----LYHHNQKDMRLYYP 855 FLH+V PG AD SYG+QV KLAGLP VI+RA D+L+ E+ H D+ L+ Sbjct: 806 FLHEVTPGAADRSYGVQVAKLAGLPKAVITRATDVLQQLEQGEMAGKGHKLIDDLPLF-- 863 Query: 856 EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++T S N + + E K ++ DE+SP AL+ LY +K Sbjct: 864 SLKTTSSLNEDTNKYSMLHEAFKNIHPDELSPKQALEALYHLK 906 >gi|319405010|emb|CBI78619.1| DNA mismatch repair protein MutS [Bartonella sp. AR 15-3] Length = 911 Score = 1001 bits (2589), Expect = 0.0, Method: Compositional matrix adjust. Identities = 493/882 (55%), Positives = 643/882 (72%), Gaps = 11/882 (1%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QYIEIK++N DSL+FYRMGDFYELFF+DA A++ LGITLT RGKHLGKDIPMCG Sbjct: 27 TPMMEQYIEIKAVNSDSLLFYRMGDFYELFFNDATEAAQALGITLTTRGKHLGKDIPMCG 86 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH+A+ Y+QKLI G+R+A+CEQIE P EAKKRG+KS+V+R+VVRL+TPGT+TE++LL Sbjct: 87 VPVHSADDYLQKLIACGYRVAVCEQIEDPAEAKKRGSKSVVQRDVVRLITPGTITEEKLL 146 Query: 146 SPTDSNYLMAVARIRT----EWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 P +NYLM +AR T E+A++WIDISTGIF+++ S + L++DIMR+DP+EII ++ Sbjct: 147 DPARANYLMTLARTITSSKEEYALSWIDISTGIFRVTESRQENLLTDIMRVDPQEIIVAD 206 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 K+LF L + QP FD + +E I Y+ ++T+ +S+ E +A A Sbjct: 207 SLFHDKSQKALFNVLDQIISPQPENLFDTTTAERDICHYFKLSTLKGIADYSRPELSAIA 266 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 AAI YI+KTQ+ ++P + PER++ +TLFID+A R +LE++RT SG R+ SLLK ID + Sbjct: 267 AAIRYIEKTQITHRPPLMRPERQNESTTLFIDAATRFSLELIRTTSGQRDGSLLKAIDRT 326 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +TG G RL +R+ SPLT I+ RLDSI+FF+ NP L I+ ILK PD+PR++SRL Sbjct: 327 VTGGGSRLLVDRLISPLTTPIAIDKRLDSIDFFLSNPPLAEAIKLILKGGPDMPRAVSRL 386 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDL-PEELRGAVEKLKKLPQSLEKTLSSMLS 440 +GRG P+D+ I+ G + IN +N L N L P+E+ E LP +L L L Sbjct: 387 ALGRGGPRDMGTIQRGFKI-INEINQILNNKLLPQEIHDVREVFLHLPTTLHFHLEQALI 445 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 DDLP FKRDGGF+R LDE RSLRD+S+ +IA LQ +YA+ET IK LKIKHNN LG Sbjct: 446 DDLPLFKRDGGFIRPNYHQKLDEMRSLRDESRCVIAGLQAQYAQETDIKTLKIKHNNILG 505 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 YFIEVTS AS L ++K RFIHRQTM+N RFTT EL +LE+RI +A N AL +ELE Sbjct: 506 YFIEVTSLQASALTSTPQAKARFIHRQTMANAMRFTTAELAELESRIAHAANHALTLELE 565 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F+ L + I EQ + + AS+ +AI+D+SIALA LA+EQ YCRP IDNS F + GRHP Sbjct: 566 IFDELVDEITEQIDFIRQASEALAILDVSIALAHLAEEQGYCRPKIDNSLAFHITAGRHP 625 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE+ L++Q ++PFIAN+C+LS N + +WLLTGPNMGGKSTFLRQNALI IMAQMG Sbjct: 626 VVEQALRKQVAEPFIANNCNLSAQNRDLNADIWLLTGPNMGGKSTFLRQNALIAIMAQMG 685 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA+ AHIGIVD+LFSRVG++D+LA GRSTFM+EM+ETA+ILN A++ S VILDEIGR Sbjct: 686 SFVPAASAHIGIVDRLFSRVGASDDLARGRSTFMMEMVETATILNHASSHSLVILDEIGR 745 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GT+T DGLSIAWAT+E+LHE NRCR +LATHFHE+T L+K L R HN T++V + N +I Sbjct: 746 GTSTFDGLSIAWATVEHLHEINRCRAILATHFHEMTALTKKLNRLHNVTMKVKNWNNDVI 805 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY--YPEIQ 858 FLH++ G AD SYG+QV KLAGLP TVISRA D+L E+ + K +L P Sbjct: 806 FLHEITKGTADRSYGVQVAKLAGLPATVISRATDVLHQLEQ-GEMSGKAHKLIDNLPLFS 864 Query: 859 TKESKNNLSKNDKLFVEK--IKCLNLDEMSPLTALKTLYAVK 898 + + K++K K +K ++ DE+SP AL+ LY +K Sbjct: 865 LRSTPFTNEKHEKCCAIKDALKNIHPDELSPKAALEELYRLK 906 >gi|163867398|ref|YP_001608593.1| DNA mismatch repair protein MutS [Bartonella tribocorum CIP 105476] gi|189030701|sp|A9ILT1|MUTS_BART1 RecName: Full=DNA mismatch repair protein mutS gi|161017040|emb|CAK00598.1| DNA mismatch repair protein MutS [Bartonella tribocorum CIP 105476] Length = 914 Score = 997 bits (2577), Expect = 0.0, Method: Compositional matrix adjust. Identities = 488/885 (55%), Positives = 655/885 (74%), Gaps = 17/885 (1%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QYIEIK+++ DSL+FYRMGDFYELFF+DA+ A++ LGITLT RGKHLG+DIPMCG Sbjct: 27 TPMMEQYIEIKAVHHDSLLFYRMGDFYELFFNDAIEAAQALGITLTARGKHLGQDIPMCG 86 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH A+ Y+QKLI G+R+A+CEQ E P EAKKRG+KS+VRR+VVRLVTPGT+TE++LL Sbjct: 87 VPVHAADDYLQKLIACGYRVAVCEQTEDPAEAKKRGSKSVVRRDVVRLVTPGTITEEKLL 146 Query: 146 SPTDSNYLMAVARIRT----EWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 PT +NYLM ++RI+T ++A++WIDISTGIF+++ S ++L++DIMR+DP+EII ++ Sbjct: 147 DPTRANYLMTLSRIKTSDGEDFALSWIDISTGIFRVTESRQEKLLADIMRVDPQEIIVAD 206 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 +KSLF L ++ QP FD +E I Y+ ++T++ +S+ E +A Sbjct: 207 AFFHDKSHKSLFNVLDHIVSPQPACLFDTLTAERDICTYFKLSTLEGVADYSRCELSAIV 266 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 AAI YI+KTQ+ ++P + PER++ +TLFID+A R +LE++RT SG R+ SLLK ID + Sbjct: 267 AAIRYIEKTQITHRPPLMQPERQNESATLFIDAATRLSLELIRTTSGQRDGSLLKAIDRT 326 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +TG G RL +R+ +PLT + I+TRLDSI+FF++NP L I+ +LK PD+PR++SRL Sbjct: 327 VTGGGSRLLIDRLIAPLTTPSAIDTRLDSIDFFLRNPSLAEAIKLVLKGGPDMPRAVSRL 386 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDL-PEELRGAVEKLKKLPQSLEKTLSSMLS 440 +GRG P+D+A I+ G I LN L N+L P+E+ + LP SL L L+ Sbjct: 387 ALGRGGPRDMATIQRGFEI-IRELNQILNNELLPQEISDVQQIFSNLPVSLHCHLEQALA 445 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 DDLP KRDGGF+R LDE R+LRD+S+R+IA LQ +YA+ET IK LKIKHNN LG Sbjct: 446 DDLPLLKRDGGFIRSNYHKELDEMRALRDESRRVIAELQAQYAQETDIKTLKIKHNNILG 505 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 YFIE+TS+ AS L + ++K RFIHRQTM+N RFTT EL DLE+RI +A N AL +ELE Sbjct: 506 YFIEITSTQASGLTNNPQAKARFIHRQTMANAMRFTTTELADLESRIAHAANHALTLELE 565 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F+ L IIEQ E + A++ +AI+D+S+ALA LA+EQ YCRP ID+S F + GRHP Sbjct: 566 IFDTLVQEIIEQVEFIRKAAEALAILDVSVALAYLAEEQGYCRPKIDHSLTFHITAGRHP 625 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE+ L++Q+++PF+ANDCDLS ++ +WLLTGPNMGGKSTFLRQNALI IMAQMG Sbjct: 626 VVEQALRKQAAEPFVANDCDLSVQENQQYAAIWLLTGPNMGGKSTFLRQNALIAIMAQMG 685 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA+ AHIG+VD+LFSRVG++D+LA GRSTFM+EM+ETA+ILN A++ S VILDEIGR Sbjct: 686 SFVPATSAHIGVVDRLFSRVGASDDLARGRSTFMMEMVETATILNHASHHSLVILDEIGR 745 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GT+T DGLSIAWA +EYLHE N CR +LATHFHE+T L++ L R HN T++V + + ++ Sbjct: 746 GTSTFDGLSIAWAAVEYLHEVNHCRAILATHFHEMTALTEKLDRLHNVTMKVKNWDGDVV 805 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK-----LYHHNQKDMRLYYP 855 FLH+V PG AD SYG+QV KLAGLP VI+RA D+L E+ H D+ L+ Sbjct: 806 FLHEVTPGAADRSYGVQVAKLAGLPPAVITRATDVLHQLEQGEMAGKGHKLIDDLPLFSL 865 Query: 856 EIQT--KESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + E KN K+D L E +K ++ DE+SP AL+ +Y +K Sbjct: 866 KATSSLNEEKN---KHDALH-EALKNIHPDELSPKQALEAIYHLK 906 >gi|240849772|ref|YP_002971160.1| DNA mismatch repair protein mutS [Bartonella grahamii as4aup] gi|240266895|gb|ACS50483.1| DNA mismatch repair protein mutS [Bartonella grahamii as4aup] Length = 914 Score = 990 bits (2559), Expect = 0.0, Method: Compositional matrix adjust. Identities = 483/883 (54%), Positives = 649/883 (73%), Gaps = 13/883 (1%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QYIEIK+++ DSL+FYRMGDFYELFF+DA+ A++ LGITLT RGKHLG+DIPMCG Sbjct: 27 TPMMEQYIEIKAVHHDSLLFYRMGDFYELFFNDAIEAAQALGITLTARGKHLGQDIPMCG 86 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH A+ Y+QKLI G+R+A+CEQIE P EAKKRG+KS+VRR+VVRLVTPGT+TE++LL Sbjct: 87 VPVHAADDYLQKLIACGYRVAVCEQIEDPAEAKKRGSKSVVRRDVVRLVTPGTITEEKLL 146 Query: 146 SPTDSNYLMAVARIRT----EWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 PT +NYLM ++RI+T E+A++WIDISTGIF+++ S ++L++DIMR+DP+EII ++ Sbjct: 147 DPTRANYLMTLSRIKTSDGEEFALSWIDISTGIFRVTESRQEKLLADIMRVDPQEIIVAD 206 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 +KSLF L + QP FD +E I +Y+ ++T++ +S+ E +A Sbjct: 207 SFFHDKSHKSLFNVLDRIISPQPACLFDALTAERDICNYFKLSTLEGVADYSRSELSAIV 266 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 AAI YI+KTQ+ ++P + PER++ +TLFID+A R +LE++RT SG R+ SLLK ID + Sbjct: 267 AAIRYIEKTQITHRPPLMQPERQNESATLFIDAATRLSLELIRTTSGQRDGSLLKAIDRT 326 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +TG G RL +R+ +PLT + I+ RLDSI+FF++NP L I+ ILK PD+PR++SRL Sbjct: 327 VTGGGSRLLIDRLIAPLTTPSAIDMRLDSIDFFLRNPSLAEAIKLILKGGPDMPRAVSRL 386 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDL-PEELRGAVEKLKKLPQSLEKTLSSMLS 440 +GRG P+D+A I+ G I L+ L N+L P+E+ + LP +L L L+ Sbjct: 387 ALGRGGPRDMATIQRGFEI-IRELHQLLNNELLPQEISDVQQVFSNLPTALYFHLEQTLA 445 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 DDLP KRDGGF+R LD+ R+LRD+S+R+IA LQ +YA+ET IK LKIKHNN LG Sbjct: 446 DDLPLLKRDGGFIRSNYHKELDKMRALRDESRRVIAELQAQYAQETDIKTLKIKHNNILG 505 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 YFIEVTS+ AS L + ++K RFIHRQTM+N RFTT EL DLE+RI +A N AL +ELE Sbjct: 506 YFIEVTSTQASALTNNPQAKARFIHRQTMANAMRFTTTELADLESRIAHAANHALTLELE 565 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F+IL I EQ + + AS+ +AI+D+S+ALA LA+EQ YCRP ID S F + GRHP Sbjct: 566 IFDILVQEITEQVDFIRKASEALAILDVSVALAYLAEEQGYCRPKIDLSLTFHITAGRHP 625 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE+ L++Q+++PFIAN+CDLS ++ +WLLTGPNMGGKSTFLRQNALI IMAQMG Sbjct: 626 VVEQALRKQAAEPFIANNCDLSVQKNQQYAAIWLLTGPNMGGKSTFLRQNALIAIMAQMG 685 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA+ AHIG+VD+LFSRVG++D+LA GRSTFM+EM+ETA+ILN A++ S VILDEIGR Sbjct: 686 SFVPATSAHIGVVDRLFSRVGASDDLARGRSTFMMEMVETATILNHASHHSLVILDEIGR 745 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GT+T DGLSIAWA +EYLHE N CR +LATHFHE+T L++ L R HN T++V + + ++ Sbjct: 746 GTSTFDGLSIAWAAVEYLHEVNHCRAILATHFHEMTALTEKLDRLHNVTMKVKNWDGDVV 805 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK-----LYHHNQKDMRLYYP 855 FLH+V PG AD SYG+QV KLAGLP VI+RA D+L E+ H D+ L+ Sbjct: 806 FLHEVTPGAADRSYGVQVAKLAGLPPAVITRATDVLHQLEQGEMAGKGHKLIDDLPLF-- 863 Query: 856 EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ N + E +K ++ DE+SP AL+ +Y +K Sbjct: 864 SLKATSPVNEARNKHCVLHEALKNIHPDELSPKQALEAIYHLK 906 >gi|49473773|ref|YP_031815.1| DNA mismatch repair protein [Bartonella quintana str. Toulouse] gi|81696081|sp|Q6G0X1|MUTS_BARQU RecName: Full=DNA mismatch repair protein mutS gi|49239276|emb|CAF25599.1| DNA mismatch repair protein mutS [Bartonella quintana str. Toulouse] Length = 911 Score = 988 bits (2555), Expect = 0.0, Method: Compositional matrix adjust. Identities = 475/882 (53%), Positives = 641/882 (72%), Gaps = 11/882 (1%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QYIEIK++N DSL+FYRMGDFYELFF+DA+ A++ LGITLT RGKHLG+DIPMCG Sbjct: 27 TPMMEQYIEIKAVNSDSLLFYRMGDFYELFFNDAIEAAQVLGITLTTRGKHLGEDIPMCG 86 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH A+ Y+QKLI G+R+A+CEQ E P EAKKRG+KS+VRR+VVRLVTPGT+TE++LL Sbjct: 87 VPVHAADDYLQKLISSGYRVAVCEQTEDPAEAKKRGSKSIVRRDVVRLVTPGTITEEKLL 146 Query: 146 SPTDSNYLMAVARIRT----EWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 PT +NYLM +ARI+T E+A++WIDISTGIF+++ S+ ++L++DIMR+DP+EII ++ Sbjct: 147 DPTRANYLMTLARIKTSKGEEFALSWIDISTGIFRVTESHPEKLLADIMRVDPQEIIVAD 206 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 +KSLF L + Q FD +E I Y+ ++T++ +S+ E +A A Sbjct: 207 SFFHDKSHKSLFNVLDRIVSPQHVSLFDAVTAERDICSYFKLSTLEGVADYSRSELSAIA 266 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 AAI YI+KTQ+ ++P + PER++ +TLFID+A R +LE++RT SG R+ SLLK ID + Sbjct: 267 AAIRYIEKTQITHRPPLMRPERQNENATLFIDAATRLSLELIRTTSGQRDGSLLKAIDRT 326 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +TG G RL +R+ +PLT + I+ RLDSI FF++N L IQ ILK PD+PR++SRL Sbjct: 327 VTGGGSRLLVDRLIAPLTTPSAIDKRLDSIAFFLRNTSLAEAIQLILKGGPDMPRAVSRL 386 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 +GRG P+DIA I+ G + L LP+E+ + LP +L L LSD Sbjct: 387 ALGRGGPRDIASIQRGFEIIHGLNQLLNNELLPQEISDVQQVFSHLPTALHFRLEQALSD 446 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 DLP KRDGGF+R LDE R+LRD+S+ IIA LQ +YA+ET IK LKIKHNN LGY Sbjct: 447 DLPLLKRDGGFIRPNYHKELDEMRALRDESRLIIAELQAQYAKETDIKTLKIKHNNILGY 506 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 FIE+T+ A+ L ++K RFIHRQT++N+ RFTT EL++LE RI +A A+ +ELE Sbjct: 507 FIEITNLQATALTNTPQAKARFIHRQTLANVMRFTTTELVELEGRIAHAATHAMTLELEI 566 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 F+ L + I EQ + + A++ +AI+D+S+ALA LA+EQ YCRP ID S F + GRHP+ Sbjct: 567 FDTLVHEITEQVDFIRKAAEALAILDVSVALARLAEEQEYCRPKIDQSLTFRITAGRHPV 626 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE+ L++Q+++PF+AN+CDLS + +WLLTGPNMGGKSTFLRQNALI IMAQMGS Sbjct: 627 VEQALRKQAAEPFVANNCDLSVQKNHQYAAIWLLTGPNMGGKSTFLRQNALITIMAQMGS 686 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPAS AHIG+VD+LFSRVG++D+LA GRSTFM+EM+ETA+ILN A++ S VILDEIGRG Sbjct: 687 FVPASSAHIGVVDRLFSRVGASDDLARGRSTFMMEMVETATILNHASSHSLVILDEIGRG 746 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 T+T DGLSIAWA +EYLHE N+CR +LATHFHE+T L++ L R +N T++V + + ++F Sbjct: 747 TSTFDGLSIAWAAVEYLHEVNQCRAILATHFHEMTALTEKLDRLYNVTMKVKNWDGDVVF 806 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ-----KDMRLYYPE 856 LH+V+PG AD SYG+QV KLAGLP VI+RA D+L E+ + D+ L+ Sbjct: 807 LHEVMPGAADRSYGVQVAKLAGLPTAVITRATDVLHQLEQGETAGKGNKLIDDLPLF--S 864 Query: 857 IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++T N + + E +K + DE+SP AL+ LY +K Sbjct: 865 LKTTSLINEETNKHCMLHEALKNIYPDELSPKEALEVLYRLK 906 >gi|260462732|ref|ZP_05810937.1| DNA mismatch repair protein MutS [Mesorhizobium opportunistum WSM2075] gi|259031376|gb|EEW32647.1| DNA mismatch repair protein MutS [Mesorhizobium opportunistum WSM2075] Length = 907 Score = 980 bits (2534), Expect = 0.0, Method: Compositional matrix adjust. Identities = 468/891 (52%), Positives = 634/891 (71%), Gaps = 12/891 (1%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 L+ + TPMM Q+IEIK+ NPDSL+FYRMGDFYELFFDDA ASR LGI LTKRGKH Sbjct: 18 LQPGAPAVTPMMEQFIEIKAANPDSLLFYRMGDFYELFFDDAEKASRALGIVLTKRGKHQ 77 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G DIPMCGVPVH A+ Y+QKLI G R+A+CEQIE P EAKKRG+KS+VRR+VVRLVTPG Sbjct: 78 GHDIPMCGVPVHAADDYLQKLIGQGFRVAVCEQIEDPAEAKKRGSKSVVRRDVVRLVTPG 137 Query: 138 TLTEDQLLSPTDSNYLMAVARIRT----EWAIAWIDISTGIFKISTSNHDRLISDIMRID 193 T+TED+LL+P++S++LMA+ R++ +A+AWIDISTG F+++ + DRL++DI R+D Sbjct: 138 TITEDKLLAPSESSFLMALGRVKGGADHSFALAWIDISTGAFRVAETTADRLLADIFRVD 197 Query: 194 PREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS 253 PRE+I +E AE K +F+ LG VA QP FD + + RIA ++++ T D+FG+FS Sbjct: 198 PRELIVAEPVFYDAELKPVFDVLGRVANPQPPSLFDSASATGRIARFFDVATPDSFGTFS 257 Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 + E +A + AI+Y++KTQ +P + PERE+ STLFID A R NLE+LRTLSG+RE S Sbjct: 258 RAELSAISGAIAYVEKTQKAERPPLSRPEREEQGSTLFIDPATRGNLELLRTLSGNREGS 317 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L K ID ++TG G RL A+R+ +PLTD I RLDS++FF L ++ LKS D Sbjct: 318 LFKAIDRTVTGGGARLLADRLMAPLTDPAAIGARLDSVSFFRSETRLCQAVRTSLKSVAD 377 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 +PR+LSRL + RG P+D+ +R G + I +F + LP+EL A+ + LPQ+L + Sbjct: 378 MPRALSRLALNRGGPRDLGALRAGFEAAGAIAEIFAETALPQELADALAAIHALPQALAR 437 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L+ L ++LP KRDGGFLR G LDE R+LRD+S+++IA L+ EET I++LKI Sbjct: 438 HLTQALGEELPLLKRDGGFLRGGYHGELDEMRALRDESRKVIAGLERSLIEETGIRSLKI 497 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +HNN LGY+IEVT++ +V+ +K RFIHRQTM+N RFTT EL +LE +I NA + Sbjct: 498 RHNNVLGYYIEVTANHHAVMTGSDGAKARFIHRQTMANAMRFTTTELAELETKIANAADR 557 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL IEL +F+ L+ + +++ + + +A++D+S ALA+L++ + +CRP++D+S F Sbjct: 558 ALGIELAAFDALTAEAVGEADKIRAGADALAVLDVSAALALLSESEAWCRPVVDSSLAFE 617 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + GRHP+VE+ L++ PF+ANDCDLS + +G +WLLTGPNMGGKSTFLRQNALI Sbjct: 618 ISGGRHPVVEQALRRSGEGPFVANDCDLSPEGNAKNGAIWLLTGPNMGGKSTFLRQNALI 677 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 I+AQ GS+VPA+ AHIG+VD+LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA ++ V Sbjct: 678 AILAQTGSFVPAASAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQAGERALV 737 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ILDEIGRGTAT DGLSIAWA +EYLHE NRCR + ATHFHE+T L+ L R HN T++V Sbjct: 738 ILDEIGRGTATFDGLSIAWAAVEYLHEKNRCRAIFATHFHEMTSLAGKLARLHNVTMRVK 797 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ-----K 848 + ++FLH+V G AD SYG+QV +LAGLP V+ RA +L E+ + Sbjct: 798 EWENDVVFLHEVGKGAADRSYGVQVARLAGLPEAVVDRAKQVLHQLEEGEVSGKTNRLVD 857 Query: 849 DMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 D+ L+ + K K+D L + +N DEM+P AL+ LY +K Sbjct: 858 DLPLF--SVAVKREAPKPVKSDALGA-ALGEINPDEMTPREALEALYRLKG 905 >gi|13474446|ref|NP_106014.1| DNA mismatch repair protein MutS [Mesorhizobium loti MAFF303099] gi|44888238|sp|Q98C21|MUTS_RHILO RecName: Full=DNA mismatch repair protein mutS gi|14025199|dbj|BAB51800.1| DNA mismatch repair protein; MutS [Mesorhizobium loti MAFF303099] Length = 909 Score = 980 bits (2534), Expect = 0.0, Method: Compositional matrix adjust. Identities = 469/883 (53%), Positives = 629/883 (71%), Gaps = 12/883 (1%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM Q+IEIK+ NPDSL+FYRMGDFYELFFDDA ASR LGI LTKRGKH G DIPMCG Sbjct: 26 TPMMEQFIEIKAANPDSLLFYRMGDFYELFFDDAEKASRALGIVLTKRGKHQGHDIPMCG 85 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH A+ Y+QKLI G R+A+CEQIE P EAKKRG+KS+VRR+VVRLVTPGT+TED+LL Sbjct: 86 VPVHAADDYLQKLIGQGFRVAVCEQIEDPAEAKKRGSKSVVRRDVVRLVTPGTITEDKLL 145 Query: 146 SPTDSNYLMAVARIRT----EWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 +P++S++LMA+ R++ +AIAWIDISTG F+++ + DRL++DI R+DPRE+I +E Sbjct: 146 APSESSFLMALGRVKGGSDHSFAIAWIDISTGAFRVAETTADRLLADIFRVDPRELIVAE 205 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 E + +F+ LG VA QP FD + + RIA ++++ T D+FG+FS+ E +A + Sbjct: 206 PVFHDPELRPVFDVLGRVANPQPPSLFDSASATGRIARFFDVATPDSFGTFSRAELSAIS 265 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 AI+Y++KTQ +P + PERE+ STLFID A R NLE+LRTLSGSRE SL K ID + Sbjct: 266 GAIAYVEKTQKAERPPLSRPEREEQGSTLFIDPATRGNLELLRTLSGSREGSLFKAIDRT 325 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +TG G RL A+R+ +PLTD I RLDS++FF L ++ LKS D+PR+LSRL Sbjct: 326 VTGGGARLLADRLMAPLTDPAAIGARLDSVSFFRTETRLCQAVRASLKSVADMPRALSRL 385 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 + RG P+D+ +R G + I+ +F LP+EL A+ ++ LPQ+L + L L + Sbjct: 386 ALNRGGPRDLGALRAGFEAAGAIVEIFAATALPQELAEAMAAIRALPQALAQHLIQALGE 445 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 +LP KRDGGFLR G LDE R+LRD+S+++IA L+ EET I++LKI+HNN LGY Sbjct: 446 ELPLLKRDGGFLRGGYHPELDEMRALRDESRKVIAGLERSLIEETGIRSLKIRHNNVLGY 505 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IEVT++ +++ +K RFIHRQTM+N RFTT EL +LE +I NA + AL IEL + Sbjct: 506 YIEVTANHHAIMTGSDGAKARFIHRQTMANAMRFTTTELAELETKIANAADRALGIELAA 565 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 FE L+ + ++E + + +A ID+S ALA+L++ + +CRP++D+S F + GRHP+ Sbjct: 566 FEALTAQAVGEAEKIRAGADALAAIDVSAALALLSESEAWCRPVVDSSLAFEISGGRHPV 625 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE+ L++ PF+ANDCDLS + +G +WLLTGPNMGGKSTFLRQNALI I+AQ GS Sbjct: 626 VEQALRRSGEGPFVANDCDLSPEGNAKNGAIWLLTGPNMGGKSTFLRQNALIAILAQTGS 685 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA+ AHIG+VD+LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA ++ VILDEIGRG Sbjct: 686 FVPATSAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQAGERALVILDEIGRG 745 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 TAT DGLSIAWA +EYLHE NRCR + ATHFHE+T L+ L R HN T++V + ++F Sbjct: 746 TATFDGLSIAWAAVEYLHEKNRCRAIFATHFHEMTSLAGKLARLHNVTMRVKEWEGDVVF 805 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DMRLYYPE 856 LH+V G AD SYG+QV +LAGLP V+ RA +L E+ + D+ L+ Sbjct: 806 LHEVGKGAADRSYGVQVARLAGLPEAVVDRAKQVLHQLEEGEVSGKTNRLVDDLPLF--S 863 Query: 857 IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + K K+D L + +N DEM+P AL+ LY +K Sbjct: 864 VAMKREAPKPVKSDALGA-ALGDINPDEMTPREALEALYRLKG 905 >gi|306839594|ref|ZP_07472398.1| DNA mismatch repair protein MutS [Brucella sp. NF 2653] gi|306405292|gb|EFM61567.1| DNA mismatch repair protein MutS [Brucella sp. NF 2653] Length = 910 Score = 962 bits (2488), Expect = 0.0, Method: Compositional matrix adjust. Identities = 457/880 (51%), Positives = 616/880 (70%), Gaps = 7/880 (0%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QYIEIK+ N DSL+FYRMGDFYELFFDDA+ AS LGITLTKRGKHLG+DIPMCG Sbjct: 25 TPMMEQYIEIKAANVDSLLFYRMGDFYELFFDDAVAASAALGITLTKRGKHLGEDIPMCG 84 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH A+ Y+QKLI G+R+A+CEQ+E P EAKKRG+KS+V+R+V+RLVTPGTLTE++LL Sbjct: 85 VPVHAADDYLQKLIAKGYRVAVCEQVEDPAEAKKRGSKSVVKRDVIRLVTPGTLTEEKLL 144 Query: 146 SPTDSNYLMAVARIRTE--WAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 P +N+LMA+ R R + A+AWIDISTG F+++ + DRL +DIMR+DPRE++ ++ Sbjct: 145 DPAQANFLMAMGRTRGDGALALAWIDISTGTFRVAETTPDRLFADIMRVDPRELVVADSA 204 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 E + +F+ +G QP FD + +++RI Y+N+ T+D FG FS+ E +A + A Sbjct: 205 FHDEELRPVFDLIGKAVTPQPATLFDSAAAQTRIQHYFNVATLDGFGQFSRPELSAISGA 264 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 I+YI+KTQ+ +P + PERE TLFID A R++LE+ RT+SG+R+ SLLK ID ++T Sbjct: 265 IAYIEKTQISERPPLMRPEREHEGGTLFIDPATRASLELARTMSGNRDGSLLKAIDRTVT 324 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G G RL AER+ +PLT +I RLDS+++ + L ++ LK PD+PR+LSRL + Sbjct: 325 GGGARLLAERLTAPLTSPKEIALRLDSVSWCLSEQTLCEALRLELKGVPDMPRALSRLAV 384 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 G ++ ++ LR KK P L + + Sbjct: 385 GLAARAIWVHWPAALKRRAASPRFWMARYCRTSLRRRARPSKKCPPVLLLISTGRWPMNC 444 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 KRDGGF+R+G ++ LDE R+LRDQS+R+IA LQ Y EET IK+LKIKHNN LGYFI Sbjct: 445 RFLKRDGGFVREGYNSELDEMRALRDQSRRVIAGLQADYIEETGIKSLKIKHNNVLGYFI 504 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EVT++++ + E+K RFIHRQTM+N RFTT EL +LE++I NA + AL IEL FE Sbjct: 505 EVTANNSGAMTDTDEAKSRFIHRQTMANAMRFTTTELAELESKIANAADRALSIELAIFE 564 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L+ + ++S+ A+ +++ D+S ALA+LA+EQ YCRP +D+S +F + GRHP+VE Sbjct: 565 ELTAEAVAHADSIRAAASALSVFDVSTALAVLAEEQGYCRPHVDDSLSFNIVAGRHPVVE 624 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 + L++Q++ PF+ANDCDLS D +G +WLLTGPNMGGKSTFLRQNALI I+AQMGS+V Sbjct: 625 QALRRQAANPFVANDCDLSPQRDGGNGAIWLLTGPNMGGKSTFLRQNALIAILAQMGSFV 684 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA AHIG+VD+LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA S VILDEIGRGTA Sbjct: 685 PAGSAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQAGEHSLVILDEIGRGTA 744 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DGLSIAWA +EYLHE NRCR L ATHFHE+T LS+ L+R N T++V + + +IFLH Sbjct: 745 TFDGLSIAWAAVEYLHEKNRCRALFATHFHEMTALSEKLERLSNVTMRVKEWDNDVIFLH 804 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DMRLYYPEIQ 858 +V G AD SYG+QV +LAGLP V++RA D+L E + D+ L+ +Q Sbjct: 805 EVAKGAADRSYGVQVARLAGLPEAVVNRARDVLHQLEAGETSGKADKLIDDLPLFSVMLQ 864 Query: 859 TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ K + D + ++ DE++P AL +Y +K Sbjct: 865 QEKPKPQIQAKDSELANAVAAISPDELTPREALDLIYKLK 904 >gi|319779930|ref|YP_004139406.1| DNA mismatch repair protein MutS [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165818|gb|ADV09356.1| DNA mismatch repair protein MutS [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 909 Score = 954 bits (2465), Expect = 0.0, Method: Compositional matrix adjust. Identities = 467/885 (52%), Positives = 629/885 (71%), Gaps = 12/885 (1%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 +TPM+ Q+IEIK+ NPDSL+FYRMGDFYELFFDDA ASR LGI LTKRGK+ G DIPM Sbjct: 24 GATPMIEQFIEIKAANPDSLLFYRMGDFYELFFDDAEKASRALGIVLTKRGKYQGLDIPM 83 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVPVH A+ Y+QKLI G R+A+CEQIE P EAKKRG KS+VRR+VVRLVTPGT+TED+ Sbjct: 84 CGVPVHAADDYLQKLIGQGFRVAVCEQIEDPAEAKKRGGKSVVRRDVVRLVTPGTITEDK 143 Query: 144 LLSPTDSNYLMAVARIR----TEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 LL+P++S++LMA+ R++ +A+AWIDISTG F+++ + DRL++DI R+DPRE+I Sbjct: 144 LLAPSESSFLMALGRVKGGADPSFALAWIDISTGAFRVTDTTADRLLADIFRVDPRELIV 203 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 +E E K +F+ LG VA QP FD + + RIA ++++ T D+FG+FS+ E +A Sbjct: 204 AEPVFHDPELKPVFDVLGRVASPQPPSLFDSASATGRIARFFDVATPDSFGAFSRAELSA 263 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 + AI+Y++KTQ +P + PERE+ STLFID A R NLE+LRTLSGSRE SL K ID Sbjct: 264 ISGAIAYVEKTQKAERPPLSRPEREEQGSTLFIDPATRGNLELLRTLSGSREGSLFKAID 323 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 ++TG G RL A+R+ +PLTD I RLDS++FF L ++ LKS D+PR+LS Sbjct: 324 RTVTGGGARLLADRLMAPLTDPAAIGARLDSVSFFRSETRLCQAVRSSLKSVADMPRALS 383 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 RL + RG P+D+ +R G + I +F LP EL A+ + LPQ+L + L L Sbjct: 384 RLALNRGGPRDLGALRAGFEAAGAIAEIFAATALPPELAAALAAIHALPQALSQHLMQAL 443 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 D+LP KRDGGF+R G A LDE R+LRD+S+++IA L+ +ET I++LKI+HNN L Sbjct: 444 GDELPLLKRDGGFVRGGYHADLDEMRALRDESRKVIAGLERSLIDETGIRSLKIRHNNVL 503 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IEVT++ +V+ +K RFIHRQTM+N RFTT EL +LE +I NA + AL IEL Sbjct: 504 GYYIEVTANHHAVMTGSDGAKARFIHRQTMANAMRFTTTELAELETKIANAADRALNIEL 563 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 +FE L+ + ++E + + +A++D+S ALA+L++ + +CRP++D+S F + GRH Sbjct: 564 AAFEALTTEAVGEAEKIRAGADALAVLDVSAALALLSESEAWCRPVVDSSLAFEITGGRH 623 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE+ L++ PF+ANDCDLS +G +WLLTGPNMGGKSTFLRQNALI I+AQ Sbjct: 624 PVVEQALRRSGEGPFVANDCDLSPEGAARNGAIWLLTGPNMGGKSTFLRQNALIAILAQT 683 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPA+ AHIG+VD+LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA ++ VILDEIG Sbjct: 684 GSFVPATSAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQAGERALVILDEIG 743 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DGLSIAWA +EYLHE NRCR + ATHFHE+T L+ L R HN T++V + + Sbjct: 744 RGTATFDGLSIAWAAVEYLHEKNRCRAIFATHFHEMTSLAGKLVRLHNVTMRVKEWENDV 803 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ-----KDMRLYY 854 +FLH+V G AD SYG+QV +LAGLP V+ RA ++L E+ + D+ L+ Sbjct: 804 VFLHEVGKGAADRSYGVQVARLAGLPEAVVDRAKEVLHQLEEGEVSGKTNRLVDDLPLF- 862 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + K K+D L + + +N DEM+P AL+ LY +K Sbjct: 863 -SVAVKREAPKPVKSDALGM-ALGEINPDEMTPREALEALYRLKG 905 >gi|328541679|ref|YP_004301788.1| DNA mismatch repair protein mutS [polymorphum gilvum SL003B-26A1] gi|326411431|gb|ADZ68494.1| DNA mismatch repair protein mutS [Polymorphum gilvum SL003B-26A1] Length = 905 Score = 947 bits (2448), Expect = 0.0, Method: Compositional matrix adjust. Identities = 451/888 (50%), Positives = 610/888 (68%), Gaps = 18/888 (2%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QYIEIK+ NPDSL+FYRMGDFYELFF+DA +ASR LGITLTKRGKHLG+DIPMCG Sbjct: 17 TPMMAQYIEIKAANPDSLLFYRMGDFYELFFEDAEVASRALGITLTKRGKHLGEDIPMCG 76 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH A+ Y+QKLI +GHR+A+CEQ E P EA+KRG+KS+VRR+V+RLVTPGTLTE++LL Sbjct: 77 VPVHAADDYLQKLIALGHRVAVCEQTEDPAEARKRGSKSVVRRDVIRLVTPGTLTEERLL 136 Query: 146 SPTDSNYLMAVARIRTE-------WAIAWIDISTGIFKISTSNHDRLISDIMRIDPREII 198 +N+L AV R+R + +AWID+STG F ++ ++ RL +D+ +IDPRE I Sbjct: 137 QAGSNNFLAAVTRLRGGSSLGDGVFGLAWIDMSTGAFHVAETDAGRLAADLAQIDPRETI 196 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + L + + LF++ P FFD S + R+A Y+ ++T+D FGSFS+ E Sbjct: 197 LPDSLLQESAIRQLFDSFSTALSPVPRAFFDGSTAADRLASYFGVSTLDGFGSFSRAELA 256 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AAA ++YI+KTQ+ +P + P RE + T+ ID A R+NLE+ RTLSG R+ SLL I Sbjct: 257 AAAGILAYIEKTQLGERPPLDPPSREAARGTMLIDPATRANLELTRTLSGERQGSLLAAI 316 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D ++TGAG RL A R+A PLTD I R D++ FF+ ++ ++ LK++PD+ R+L Sbjct: 317 DRTVTGAGARLLASRLAGPLTDPQAIARRHDAVGFFLDEEMMRERLRGELKAAPDIARAL 376 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLF-LKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 +R+ + RG P+D+ + G+++ IL+L D+P E+ A L P L L+ Sbjct: 377 ARIALQRGGPRDLLAVAQGLQAARRILDLTETGRDIPAEIAAARASLAAAPHELGTELAQ 436 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 L+ + P KRDGGF+ G +A LDE R LRD+S+R+IA LQ YAEE +++LKIKHNN Sbjct: 437 ALAAEPPLLKRDGGFVAGGYNADLDELRLLRDESRRVIARLQADYAEELGLRSLKIKHNN 496 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 LG+FIE + A L D RFIHRQTM+ RFTT L DLE++I +A AL I Sbjct: 497 VLGWFIEAPGAQAEKLTAD---PARFIHRQTMAGAMRFTTTALADLESKIASAGERALAI 553 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 ELE FE L+ A++E E++ A++ +A++D+S ALA LA++ Y RP +D+S F ++ G Sbjct: 554 ELEIFETLARAVVEAGEAIKAAARGLAVLDVSAALARLAQDDGYTRPHVDDSRAFRIEAG 613 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ L++ + F+AND DL ++G++WL+TGPNM GKSTFLRQNALI ++A Sbjct: 614 RHPVVEQALRRAGGESFVANDADLGPQGGSDTGRIWLITGPNMAGKSTFLRQNALIAVLA 673 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q GSYVPA++AHIG+VD+LFSRVG+AD+LA GRSTFMVEM+ETA+ILNQA ++S VILDE Sbjct: 674 QTGSYVPAAHAHIGVVDRLFSRVGAADDLARGRSTFMVEMVETAAILNQAGDRSLVILDE 733 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGTAT DGLSIAWA IE+LHE NR R L ATH+HELT L++ L+R NAT+ V + N Sbjct: 734 IGRGTATFDGLSIAWAAIEHLHEVNRSRALFATHYHELTALAQRLERLSNATVSVKEWNG 793 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DMRL 852 ++FLH+++PG AD SYGIQV KLAGLP V+ RA +L E+ D+ L Sbjct: 794 EVVFLHEIVPGAADRSYGIQVAKLAGLPAVVVERARAVLSQLEEKDRRAPAETLIDDLPL 853 Query: 853 YYPEIQTKESKNNLSKNDKL--FVEKIKCLNLDEMSPLTALKTLYAVK 898 + Q + E + L+ D+M+P AL LYA+K Sbjct: 854 FAAAPQPARHPTDAPATGAADPLAEALDALDPDDMTPRAALNALYALK 901 >gi|307943418|ref|ZP_07658762.1| DNA mismatch repair protein MutS [Roseibium sp. TrichSKD4] gi|307773048|gb|EFO32265.1| DNA mismatch repair protein MutS [Roseibium sp. TrichSKD4] Length = 906 Score = 921 bits (2380), Expect = 0.0, Method: Compositional matrix adjust. Identities = 451/886 (50%), Positives = 623/886 (70%), Gaps = 16/886 (1%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QYIEIK+ NPDSL+FYRMGDFYELFF DA +A++ LGITLTKRGKH G DIPMCG Sbjct: 17 TPMMAQYIEIKTANPDSLLFYRMGDFYELFFHDAEVAAQALGITLTKRGKHQGADIPMCG 76 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH A+ Y+QKLI +GHR+++CEQ E P EAKKRG+KS+VRR+VVRLVTPGTLTED+LL Sbjct: 77 VPVHAADDYLQKLISLGHRVSVCEQTEDPAEAKKRGSKSVVRRDVVRLVTPGTLTEDRLL 136 Query: 146 SPTDSNYLMAVARIRTE-------WAIAWIDISTGIFKISTSNHDRLISDIMRIDPREII 198 +N+L A++R++ + +AWID+STG F++S ++H RL +D+ +I PRE+I Sbjct: 137 DAGANNFLAALSRLKAGSQEGDAIYGLAWIDMSTGSFQVSETDHQRLSADLAQIAPRELI 196 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++ L E + L E G+ P FFD S + R+A Y+ + T+D FG+FS+ E T Sbjct: 197 LADNLLQETELRQLVELTGSALSPVPRAFFDGSTAADRLAHYFGVKTLDGFGTFSRAELT 256 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA+ ++YI+KTQ+ +P + P RE + ID A R+NLE+ RTLSG ++ SLL TI Sbjct: 257 AASGILAYIEKTQLGERPPLDPPTREAGSGRMLIDPATRANLELSRTLSGEKQGSLLTTI 316 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D ++TG G RL A R+A PL IN R DS++FF+ N I+ +++ LK +PD+ R+L Sbjct: 317 DRTVTGGGARLLASRLAGPLIRPDIINQRHDSVDFFLNNEIMREHLRQTLKGAPDMARAL 376 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN-DLPEELRGAVEKLKKLPQSLEKTLSS 437 SR+ + RG P+DI I G+ + ++L++ + ++P EL A L+K P +L L Sbjct: 377 SRIALQRGGPRDILSIAQGLEAAQSLLDMTGQGGNIPTELAAARTSLEKAPHALGAELMV 436 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + +D P KRDGGF+ G DA+LDE R+LRD+S+++IA LQ Y+E+ +++LKIKHNN Sbjct: 437 AIKEDPPLLKRDGGFVASGYDANLDELRALRDESRKVIAQLQANYSEQLGLRSLKIKHNN 496 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 LG+FIE ++ A L+ D RFIHRQTM+ RFTT EL DLE++I +A ++ I Sbjct: 497 VLGWFIETPTAQADKLQDD---PARFIHRQTMAGAMRFTTTELADLESKIASAGERSMAI 553 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 ELE F+ L++ I+ +++ A+ ++++D+S ALA LA+++N+ RP+ID S F +K G Sbjct: 554 ELEVFDRLTSEIVSAGDAIKAAAHGLSVLDVSAALAKLAQDENHSRPLIDESRAFDIKGG 613 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ LK F+AND +L D+ SG +WL+TGPNM GKSTFLRQNALI +MA Sbjct: 614 RHPVVERALKHSGGDSFVANDANLGPQADRESGCIWLITGPNMAGKSTFLRQNALIAVMA 673 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 QMG++VPA+ AHIGIVD+LFSRVG+AD+LA GRSTFMVEM+ETA+ILNQA ++S VILDE Sbjct: 674 QMGAFVPATSAHIGIVDRLFSRVGAADDLARGRSTFMVEMVETAAILNQAGDRSLVILDE 733 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGTAT DGLSIAWATIE+LHE N+ R L ATH+HELT LS+ L R NAT+ V + + Sbjct: 734 IGRGTATFDGLSIAWATIEHLHEVNKSRALFATHYHELTALSQKLDRLTNATVSVKEWDG 793 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK----DMRLY 853 +IFLH+++PG AD SYGIQV KLAGLP +V+ R+ +L E+ + D Sbjct: 794 EVIFLHEIVPGAADRSYGIQVAKLAGLPASVVERSQQVLSQLEEQDRQSPSQSLIDELPL 853 Query: 854 YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + + T ++ + + D L E++ L+ D+M+P AL LY +KA Sbjct: 854 FAAVPTPQTAKSPEQPDPL-SEELSILDPDDMTPREALDALYRLKA 898 >gi|118593679|ref|ZP_01551054.1| DNA mismatch repair protein [Stappia aggregata IAM 12614] gi|118433689|gb|EAV40351.1| DNA mismatch repair protein [Stappia aggregata IAM 12614] Length = 908 Score = 915 bits (2366), Expect = 0.0, Method: Compositional matrix adjust. Identities = 451/888 (50%), Positives = 615/888 (69%), Gaps = 19/888 (2%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM Q++EIK+ NPDSL+FYRMGDFYELFF+DA +AS LGITLTKRGKH G DIPMCG Sbjct: 17 TPMMAQFLEIKAANPDSLLFYRMGDFYELFFEDAEVASAALGITLTKRGKHQGADIPMCG 76 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH A+ Y+ KLI GHR+++CEQ E P EAKKRG+KS+VRR+VVRLVTPGTLTE++LL Sbjct: 77 VPVHAADDYLNKLIAKGHRVSVCEQTEDPAEAKKRGSKSVVRRDVVRLVTPGTLTEERLL 136 Query: 146 SPTDSNYLMAVARIRTE-------WAIAWIDISTGIFKISTSNHDRLISDIMRIDPREII 198 +NYLMA+ R++ + +AWID+STG F++S ++H RL +D+ ++ PRE+I Sbjct: 137 DAGSNNYLMALTRLKGGSLDGSAVYGLAWIDMSTGSFQVSETDHQRLAADLAQVSPRELI 196 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 S+ L +E + E G P FFD S + R+A Y+ + T+D FG+FS+ E + Sbjct: 197 LSDNLLQESELRLTAEQAGGALSPVPRAFFDSSTATDRLAHYFGVKTLDGFGTFSRAELS 256 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AAA ++Y++KTQ+ +P + P RE + ID A R+NLE+ RTLSG ++ SLL TI Sbjct: 257 AAAGILAYVEKTQLGERPPLDPPVREAGAGRMLIDPATRANLELSRTLSGEKQGSLLATI 316 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D ++TG G RL A R+A PL + I RLD + FF++N I+ +++ LK +PD+ R+L Sbjct: 317 DRTVTGGGSRLLASRLAGPLVNVDAIQHRLDGVAFFLENEIMREGLRQTLKGAPDMARAL 376 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 SR+ + RG P+DI + G+ + +L+ +P E+ A L++ P L L+ Sbjct: 377 SRIALNRGGPRDILSVAQGLEAARAVLDQTSATAGTIPAEIAAARTSLEQAPHDLGSELT 436 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + L D+ P KRDGGF+ G +A LDE RSLRD+S+++IA LQ +Y+EE +++LKIKHN Sbjct: 437 TALKDEPPLLKRDGGFIATGYNADLDELRSLRDESRKVIAKLQAEYSEELGLRSLKIKHN 496 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 N LG+FIE S+ L D RFIHRQTM+ RFTT EL DLE++I +A +L Sbjct: 497 NVLGWFIEAPSAQTEKLTAD---PGRFIHRQTMAGAMRFTTTELADLESKIASAGERSLA 553 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 IELE FE L+ AII+ E++ A+ ++I+D+S ALA LA+E+NY RP++D+S F +K Sbjct: 554 IELEIFERLAKAIIDAGEAIKAAAHGLSILDVSAALAKLAQEENYVRPVVDDSRAFDIKG 613 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VEK L++ F+AND +L ++ G +WL+TGPNM GKSTFLRQNALI +M Sbjct: 614 GRHPVVEKALRKSGGDSFVANDANLGPEAGEDIGHIWLITGPNMAGKSTFLRQNALIAVM 673 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQMG YVPA+ AHIG+VD+LFSRVG+AD+LA GRSTFMVEM+ETA+ILNQA ++S VILD Sbjct: 674 AQMGGYVPATAAHIGVVDRLFSRVGAADDLARGRSTFMVEMVETAAILNQAGDRSLVILD 733 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGTAT DGLSIAWATIE+LHE NR R L ATH+HELT LS L+R NAT+ V + Sbjct: 734 EIGRGTATFDGLSIAWATIEHLHEVNRSRALFATHYHELTALSGKLERLSNATVSVKEWK 793 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DMR 851 +IFLH+++PG AD SYGIQV KLAGLP +V+ R+ +L E+ + ++ Sbjct: 794 GDVIFLHEIVPGAADRSYGIQVAKLAGLPVSVVERSKQVLSQLEEQDRRSPAESLIDELP 853 Query: 852 LYYPEIQTKESKN-NLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 L+ S + S+ D + V ++ +N D+M+P AL+ LY +K Sbjct: 854 LFASLTAPAPSAHAGFSEPDPVAV-ALEGINPDDMTPREALEALYRLK 900 >gi|114705044|ref|ZP_01437952.1| DNA mismatch repair protein [Fulvimarina pelagi HTCC2506] gi|114539829|gb|EAU42949.1| DNA mismatch repair protein [Fulvimarina pelagi HTCC2506] Length = 896 Score = 913 bits (2359), Expect = 0.0, Method: Compositional matrix adjust. Identities = 445/887 (50%), Positives = 605/887 (68%), Gaps = 14/887 (1%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 + TPMM QYIEIK+ NPD L+FYRMGDFYELFFDDA ASR LGITLTKRGKHLG DIPM Sbjct: 8 APTPMMAQYIEIKAANPDCLLFYRMGDFYELFFDDAEDASRALGITLTKRGKHLGDDIPM 67 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVP+H A+ Y+QKLI +GHR+AICEQ+E P EAKKRG+KS+V+R+VVRLVTPGT+TE+ Sbjct: 68 CGVPIHAADDYLQKLISLGHRVAICEQLEDPAEAKKRGSKSVVKRDVVRLVTPGTITEET 127 Query: 144 LLSPTDSNYLMAVARIR-----TEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREII 198 LL P N+LM VAR+ E+A+AW D+STG F++ ++ RL +DI I+P E++ Sbjct: 128 LLEPGQGNHLMTVARLGGKAKGAEYALAWTDLSTGDFRLGVTDEGRLEADISAIEPSELV 187 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 S+ L G A +P +FD + + RIA ++ ++T+D FG FS+ E + Sbjct: 188 VSDDLYGDERLAGLVRRFGKRARPEPRAYFDVATAPDRIAKFFGVSTLDGFGDFSRAELS 247 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA+ I+Y+ KTQ+ +P + P+R+ + + ID A R++LE+ R+ G R+ SLL I Sbjct: 248 AASGLIAYLGKTQLDARPALRRPQRQLAGAAMEIDPATRASLELTRSAQGKRQGSLLGVI 307 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D + +G GGRL A R++SPLTD+ I R SI FI++ L + + L PD+ R+L Sbjct: 308 DRTKSGVGGRLLASRLSSPLTDADGIAKRQASIGHFIEDVSLRSEARAHLARLPDMERAL 367 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 SRL + RG P+D+ IR G+R I + L+ +LP EL +L LP L L + Sbjct: 368 SRLALDRGGPRDLLGIRAGLRGAAAIADA-LQGELPPELADCRAELAALPADLSTVLEEL 426 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 L D+ P KRDGGF+R GA LDE R+LR+ ++R +A LQ + AEET+I++LKIKHNN Sbjct: 427 LDDEAPLLKRDGGFVRAGALPELDEARTLREDARRFVAELQGRLAEETRIRSLKIKHNNV 486 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 LG+FIEV ++ L E+ DRFIHRQT+++ RFTT EL +L+ RI NA AL IE Sbjct: 487 LGFFIEVNEANGKTLMAG-ENADRFIHRQTLASAMRFTTGELAELQERIVNAGADALRIE 545 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 LE+F+ L +A++ +++ L AS + ID++ +LA A +++ RP +D+S F V+ GR Sbjct: 546 LETFDRLRDAVVSEADRLQRASAALGAIDVAASLADFAVSEDWVRPKVDDSLAFKVEGGR 605 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKN-SGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 HP+VE L F+ANDCDLS P + +G +WL+TGPNMGGKSTFLRQNALI I+A Sbjct: 606 HPVVEAALAAAQGSSFVANDCDLSPPGAASEAGAIWLVTGPNMGGKSTFLRQNALIAILA 665 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+GSYVPA AHIGIVD+LFSRVG++D LA GRSTFMVEM+ETA+ILNQ+ ++ VILDE Sbjct: 666 QIGSYVPAGAAHIGIVDRLFSRVGASDELAEGRSTFMVEMVETAAILNQSGERALVILDE 725 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGTAT DGLSIA+A +E+LHE NRCR L ATHFHE+T LS+ L R N T++V + Sbjct: 726 IGRGTATYDGLSIAFAAVEHLHEVNRCRALFATHFHEMTALSERLSRLSNVTMRVKEWKS 785 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DMRL 852 ++FLH+V PG AD SYGIQV KLAGLP +V+SRA +L E+ ++ D+ L Sbjct: 786 DVVFLHEVGPGSADRSYGIQVAKLAGLPKSVVSRAKAVLAELERTDQGEKRGTFLDDLPL 845 Query: 853 YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + ++ + + + + +K ++ D +SP AL+ LY +KA Sbjct: 846 FSAAVK-RAADEEAAAAVDPVADALKAIDPDVLSPREALEALYRLKA 891 >gi|254503118|ref|ZP_05115269.1| DNA mismatch repair protein MutS [Labrenzia alexandrii DFL-11] gi|222439189|gb|EEE45868.1| DNA mismatch repair protein MutS [Labrenzia alexandrii DFL-11] Length = 906 Score = 913 bits (2359), Expect = 0.0, Method: Compositional matrix adjust. Identities = 452/892 (50%), Positives = 616/892 (69%), Gaps = 16/892 (1%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM Q+IEIK+ NPDSL+FYRMGDFYELFF+DA +ASR LGITLTKRGKH G+DIPMCG Sbjct: 17 TPMMAQFIEIKTANPDSLLFYRMGDFYELFFEDAEIASRALGITLTKRGKHQGEDIPMCG 76 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH A+ Y+QKLI +GHR+++CEQ E P EAKKRG+KS+VRR+VVRLVTPGTLTE++LL Sbjct: 77 VPVHAADDYLQKLIALGHRVSVCEQTEDPAEAKKRGSKSVVRRDVVRLVTPGTLTEERLL 136 Query: 146 SPTDSNYLMAVARIR-------TEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREII 198 +NYLMA+ R++ + +AWID+STG F++S ++H RL +D+ ++ PRE+I Sbjct: 137 DAGANNYLMALTRLKGGSLAGDAVYGLAWIDMSTGSFQVSETDHQRLAADLAQVAPRELI 196 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++ L + + L E G P FFD S + R+A Y+ + T+D FG+FS+ E + Sbjct: 197 LADNLLQEQDVRQLAELSGGALSPVPRAFFDGSTAADRLAHYFGVKTLDGFGTFSRAELS 256 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AAA +SYI+KTQ+ +P + P RE + ID A R+NLE+ RTLSG ++ SLL TI Sbjct: 257 AAAGILSYIEKTQLGERPPLDPPVREAGAGRMLIDPATRANLELSRTLSGEKQGSLLSTI 316 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D ++TG G RL A R+A PL + I R D++ FF+ N I+ +++ LK +PD+ R+L Sbjct: 317 DRTVTGGGSRLLASRLAGPLINVDAIQRRHDAVAFFLNNEIMREGLRQTLKGAPDMARAL 376 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLS 436 SR+ + RG P+DI I G+ + +L+ +++P E+ A L + P L L Sbjct: 377 SRIALNRGGPRDILSIAQGLAAARAVLDQTGTTPSEIPPEIAAARSSLDQAPHELGAELV 436 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + + ++ P KRDG F+ G +A LDE R+LRD+S+++IA LQ YAEE +++LKIKHN Sbjct: 437 AAIKEEPPLLKRDGNFVATGYNADLDELRALRDESRKVIAKLQADYAEELGLRSLKIKHN 496 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 N LG+FIE ++ L D RFIHRQTM+ RFTT EL DLE++I +A +L Sbjct: 497 NVLGWFIEAPTAQTEKLTAD---PGRFIHRQTMAGAMRFTTTELADLESKIASAGERSLA 553 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 IELE FE LS AII+ +++ A+Q ++I+D+S ALA LA+++NY RP++D+S F +K Sbjct: 554 IELEIFERLSQAIIDAGDAIKAAAQGLSILDVSAALAKLAQDENYARPLVDDSRAFDIKA 613 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 RHP+VE LK+ + F+AND +L D++ G +WL+TGPNM GKSTFLRQNALI ++ Sbjct: 614 ARHPVVEVALKKAGGESFVANDANLGPEADEDIGHIWLITGPNMAGKSTFLRQNALIAVL 673 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQMGS+VPA+ AHIGIVD+LFSRVG+AD+LA GRSTFMVEM+ETA+ILNQA ++S VILD Sbjct: 674 AQMGSFVPAASAHIGIVDRLFSRVGAADDLARGRSTFMVEMVETAAILNQAGDRSLVILD 733 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGTAT DGLSIAWATIE+LHE NR R L ATH+HELT LS L+R NAT+ V + N Sbjct: 734 EIGRGTATFDGLSIAWATIEHLHEVNRSRALFATHYHELTALSAKLERLSNATVSVKEWN 793 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK----LYHHNQKDMRL 852 +IFLH+++PG AD SYGIQV KLAGLP TV+ R+ +L E+ N D Sbjct: 794 GEVIFLHEIVPGAADRSYGIQVAKLAGLPATVVERSKQVLSQLEEQDRNAPSQNLIDELP 853 Query: 853 YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTLEK 904 + + S ++ E + N D+M+P AL+ LY +K +++ Sbjct: 854 LFATLAPPPSAPAAAREADPIHEALGEFNPDDMTPREALEALYKLKGLQVKQ 905 >gi|85713673|ref|ZP_01044663.1| MutS 1 protein [Nitrobacter sp. Nb-311A] gi|85699577|gb|EAQ37444.1| MutS 1 protein [Nitrobacter sp. Nb-311A] Length = 908 Score = 907 bits (2344), Expect = 0.0, Method: Compositional matrix adjust. Identities = 456/887 (51%), Positives = 612/887 (68%), Gaps = 19/887 (2%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY+EIK+ NP L+FYRMGDFYELFF+DA +ASR LGITLTKRGKH G DIPMCG Sbjct: 23 TPMMEQYLEIKAANPGLLLFYRMGDFYELFFEDAEIASRALGITLTKRGKHQGADIPMCG 82 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPV ++ Y+ +LI GHR+A+CEQ E P A+KRGNKS+VRR+V+RLVTPGTLTED LL Sbjct: 83 VPVERSDDYLHRLIAAGHRVAVCEQTEDPSAARKRGNKSVVRRDVIRLVTPGTLTEDTLL 142 Query: 146 SPTDSNYLMAVARIRT-----EWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 +NYL+A+AR R +A+AWIDIST F ++ L + + RI+P E+I S Sbjct: 143 DARANNYLLALARARASSDADRFALAWIDISTAEFMVTECGASELAATLARINPNEVIVS 202 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 + L L +V +VF D + +E R+ DY+ + T+D + S++E TAA Sbjct: 203 DALHGDPGLNVLLRELPSVTPLTRDVF-DGATAEQRLCDYFAVATMDGLSAMSRLEATAA 261 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 AAA++YI +TQ+ +P + P RE ST+ ID A R+NLE+ RTL+G R SLL ID Sbjct: 262 AAAVTYIDRTQIGQRPPLSPPSREASGSTMAIDPATRANLELTRTLAGERRGSLLDAIDR 321 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T AG RL A+R+A+PLTD+ I RLD++ F + + I+ IL+++PD+ R+L+R Sbjct: 322 TTTAAGSRLLAQRLAAPLTDTAAITRRLDAVAAFTSDNTARDDIRAILRTAPDMSRALAR 381 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLK-NDLPEELRGAVEKLKKLPQSLEKTLSSML 439 L +GRG P+D+A +RDGI + L + D PE++ A++ L++ + L + L + L Sbjct: 382 LSLGRGGPRDLAGLRDGIMAADQALTRLAEFPDPPEDIAAAMQGLRRPSRELARELGNAL 441 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 S+ LP KRDGGF+R+G A+LDE R LRD S+ ++A++Q +YAEET +K LKI+HNN L Sbjct: 442 SESLPLMKRDGGFVREGYHAALDEARKLRDDSRLVVAAMQARYAEETGVKTLKIRHNNVL 501 Query: 500 GYFIEVTSSSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GYF+EVT+ A ++ L + FIHRQT++ RFTT EL ++E RI NA AL +E Sbjct: 502 GYFVEVTAQHADRLMSAPLNAT--FIHRQTLAGQVRFTTSELGEIEARIANAGERALGLE 559 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 LE FE L+ I+ + + NA+ A +D++ ALA LA ++NY RP +D S F ++ GR Sbjct: 560 LEIFERLAGMAIQNGDEIRNAAHAFAQLDVAAALATLAIDENYTRPEVDASLGFAIESGR 619 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ LK+ + +PFIAN CDLS + SG++WLLTGPNM GKSTFLRQNALI +MAQ Sbjct: 620 HPVVEQALKR-TGQPFIANACDLSPGPGQTSGQVWLLTGPNMAGKSTFLRQNALIALMAQ 678 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA A IG++D+LFSRVG+AD+LA GRSTFMVEM+ETA ILNQA+ ++ VILDEI Sbjct: 679 IGSFVPARRARIGMIDRLFSRVGAADDLARGRSTFMVEMVETAVILNQASERALVILDEI 738 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGTAT DGLSIAWATIE+LHE+NRCR L ATH+HELT LS L R NAT++V + + Sbjct: 739 GRGTATFDGLSIAWATIEHLHESNRCRALFATHYHELTALSAKLPRLFNATVRVKEWHGE 798 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DMRLY 853 +IFLH+V+PG AD SYGIQV +LAGLP +VI+RA +L E + D+ L+ Sbjct: 799 VIFLHEVLPGAADRSYGIQVARLAGLPPSVIARAKSVLAKLEAQDRGSTARALADDLPLF 858 Query: 854 -YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 P + ES S +E + L+ DEMSP AL LYA+KA Sbjct: 859 AVPARRVGESAP--SSETAPLIEALTSLHPDEMSPREALDALYALKA 903 >gi|90420552|ref|ZP_01228459.1| DNA mismatch repair protein mutS [Aurantimonas manganoxydans SI85-9A1] gi|90335280|gb|EAS49033.1| DNA mismatch repair protein mutS [Aurantimonas manganoxydans SI85-9A1] Length = 929 Score = 900 bits (2327), Expect = 0.0, Method: Compositional matrix adjust. Identities = 448/884 (50%), Positives = 611/884 (69%), Gaps = 14/884 (1%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QYIEIKS NPD L+FYRMGDFYELFFDDA+ ASR LGITLTKRGKHLG DIPM G Sbjct: 44 TPMMAQYIEIKSANPDCLLFYRMGDFYELFFDDAVEASRALGITLTKRGKHLGDDIPMAG 103 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPV +A+ Y+ KLI +GHR+A+CEQ+E P EA+KRG KS+VRR+VVRLVTPGT+TE+ LL Sbjct: 104 VPVVSADDYLHKLIALGHRVAVCEQVEDPAEARKRGAKSVVRRDVVRLVTPGTITEETLL 163 Query: 146 SPTDSNYLMAVARIR-----TEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 P NYLMA+AR+ +A+AW D+STG F+++ ++ RL +DI I+P E++ + Sbjct: 164 EPGRPNYLMALARLGGSGPGATFALAWTDLSTGSFRLAETDMARLSTDIAAIEPSELVVA 223 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 + + L G A +P FD + +E R+ ++ + T++ FG F++VE A Sbjct: 224 DPVFHDEAVQPLLRRFGRTARPEPQALFDGATAEERLCRFFGVATLEGFGGFTRVELAAG 283 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 AA I+Y+ KTQ+ +P + PER S + ID A R++LE+ RT+SG R+ SLL TID Sbjct: 284 AALIAYLGKTQLAARPALQRPERIAPGSLMQIDPATRASLELTRTISGKRQGSLLATIDR 343 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 ++TGAGGRL A R+A PLTD I R S+ FI + ++ L PD R+LSR Sbjct: 344 TVTGAGGRLLAGRLAGPLTDPAAIRERQASVAHFIADMTARQRLRATLGGLPDTERALSR 403 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 L +GRG P+D+A IRDG+++G+ I + E R A LE L++ L+ Sbjct: 404 LSLGRGGPRDLAAIRDGLQAGLAIAASLDGDLPAELARAAAALAALPRHCLEP-LAATLA 462 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 DD+P KRDGGF+R+GA A LDE R+LR+ S+R+IA LQ +YA ET ++NL+IKHNN LG Sbjct: 463 DDMPLSKRDGGFVREGAIAELDEARALRENSRRVIAELQGRYAAETGVRNLRIKHNNVLG 522 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 YF+EV+ A L + E RFIHRQTM++ RFTT EL +LE+RI A + AL IEL Sbjct: 523 YFVEVSDGQAKALTEG-EGVARFIHRQTMASAMRFTTTELSELESRIAGAASEALRIELA 581 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 +F+ L++ ++ ++++ ++ +A++D+S ALA LA +++ P++D+S F V+ GRHP Sbjct: 582 TFDRLADTVVGCADAIQRGAEALAVLDVSAALAELAVAEDWTAPLVDDSLAFHVECGRHP 641 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE LK S PF+ANDCDLS P+D ++G +WLLTGPNMGGKSTFLRQNAL+ ++AQ+G Sbjct: 642 VVEAALKAGSGDPFVANDCDLSPPDDADAGAIWLLTGPNMGGKSTFLRQNALVAVLAQIG 701 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 SYVPA+ AHIGIVD+LFSRVG++D+LA GRSTFMVEM+ETA+ILNQ+ ++ VILDEIGR Sbjct: 702 SYVPATRAHIGIVDRLFSRVGASDDLAEGRSTFMVEMVETAAILNQSGERALVILDEIGR 761 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DGLSIA+A +E+LHE NRCR L ATHFHE+T L+ L R NAT++V + +I Sbjct: 762 GTATYDGLSIAFAAVEHLHEVNRCRALFATHFHEMTALAARLGRMKNATMRVKEWEGEVI 821 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DMRLYYP 855 FLH+V PG+AD SYGIQV KLAGLP + RA +L E+ ++ D+ L+ Sbjct: 822 FLHEVKPGVADRSYGIQVAKLAGLPTQAVERARQVLIQLERGEQGEKRSAFVDDLPLFSA 881 Query: 856 EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 ++ E+ + D + + ++ D +SP AL+ LY +K Sbjct: 882 VVRRSEAPERPA--DTALRDALAEVDPDSLSPREALEELYRLKG 923 >gi|254472527|ref|ZP_05085927.1| DNA mismatch repair protein MutS [Pseudovibrio sp. JE062] gi|211958810|gb|EEA94010.1| DNA mismatch repair protein MutS [Pseudovibrio sp. JE062] Length = 911 Score = 897 bits (2319), Expect = 0.0, Method: Compositional matrix adjust. Identities = 446/890 (50%), Positives = 619/890 (69%), Gaps = 21/890 (2%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QYIEIK+ NPDSL+FYRMGDFYELFF+DA +AS+ LGITLTKRGKH G DIPMCG Sbjct: 17 TPMMAQYIEIKTANPDSLLFYRMGDFYELFFEDAEIASQSLGITLTKRGKHNGDDIPMCG 76 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH A+ Y+QKLI +GHR+++CEQ E P EAKKRG+KS+VRR+VVRLVTPGT+TED+LL Sbjct: 77 VPVHAADDYLQKLIGLGHRVSVCEQTEDPAEAKKRGSKSVVRRDVVRLVTPGTITEDRLL 136 Query: 146 SPTDSNYLMAVARIRTE-------WAIAWIDISTGIFKISTSNHDRLISDIMRIDPREII 198 +N+L ++AR++ + +AWID+STG+F+++ S+ RL +D+ RIDP E++ Sbjct: 137 DAKRNNFLASLARVKGGSAADGNLYGLAWIDMSTGMFRVAESDDVRLAADLARIDPSELV 196 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++ L E ++ E LG P FFD + ++ R++ Y+++ T+D F ++++ E Sbjct: 197 LADALLQETELRATVEGLGAALSPVPRTFFDGANAQDRLSTYFSVGTLDGFANYTRAELI 256 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA+ ++YI KTQ+ +P + P +E L ID A R+NLE+ RTLSG R SLL I Sbjct: 257 AASGILAYIDKTQLGERPPLDPPVKEAAAGQLLIDPATRANLELTRTLSGERRGSLLSAI 316 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D ++TGAG RL A R+A PLTD +I R D+I FF + + I+ +LKS+PD+ R+L Sbjct: 317 DKTVTGAGSRLLASRLAGPLTDPEQIRHRQDTIAFFASDTMQREDIRGLLKSAPDMSRAL 376 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKND-LPEELRGAVEKLKKLPQSLEKTLSS 437 SRL + RG P+D+ I ++S I L P+E+ AV+KL++ P +L + L Sbjct: 377 SRLAVDRGGPRDLQSIAFAMKSAREIAGLLASGGAYPQEVGFAVQKLEQAPHALGEKLGI 436 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 ++++ P KRDGGF+ G + LDE ++LRDQS+++IA +Q AEE I++LKIKHNN Sbjct: 437 AIAEEPPLLKRDGGFVAPGYNPDLDELKALRDQSRKVIAQMQADLAEELGIRSLKIKHNN 496 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 LG+F+E ++ +K D RFIHRQTM+ RFTT EL DLE++I +A AL I Sbjct: 497 VLGWFMEAPTAQCDPMKDD---PARFIHRQTMAGAMRFTTTELADLESKIASAGERALAI 553 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 ELE F L+ A++ + A++ +AI+D+S +LA+LA+ +NY RP +D S F ++ G Sbjct: 554 ELEIFNELTKAVVAAGGLIKAAAEALAILDVSTSLAVLAEAENYSRPAVDGSLAFTIEGG 613 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ L++ S +PF+AN+ +L +G++WL+TGPNM GKSTFLRQNALI ++A Sbjct: 614 RHPVVEQALRK-SGEPFVANNANLGPQESYENGQIWLITGPNMAGKSTFLRQNALIAVLA 672 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 QMGS+VPA+ AHIG+VD+LFSRVG+AD+LA GRSTFMVEM+ETA+ILNQAT++S VILDE Sbjct: 673 QMGSFVPATNAHIGVVDRLFSRVGAADDLARGRSTFMVEMVETAAILNQATDRSLVILDE 732 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGTAT DGLSIAWA IE+LHETNR R L ATH+HE+T LS+ L+R +NAT++V + Sbjct: 733 IGRGTATFDGLSIAWAAIEHLHETNRSRSLFATHYHEITALSQRLERLNNATVRVKEWKG 792 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE-----KLYHHNQKDMRL 852 ++FLH+++ G AD SYGIQV KLAGLP TV+SRA ILK E K D+ L Sbjct: 793 DVVFLHEIVEGAADRSYGIQVAKLAGLPKTVVSRAQKILKQLEEQDTNKPSEKLLDDLPL 852 Query: 853 YYPEIQTKESKNNLSKNDKL----FVEKIKCLNLDEMSPLTALKTLYAVK 898 + Q E+ + + VE + + D+M+P A + LYA+K Sbjct: 853 FASFSQPLETIPEPEEEESFVSNELVELLDSFDPDDMTPRQAQEALYALK 902 >gi|316931934|ref|YP_004106916.1| DNA mismatch repair protein MutS [Rhodopseudomonas palustris DX-1] gi|315599648|gb|ADU42183.1| DNA mismatch repair protein MutS [Rhodopseudomonas palustris DX-1] Length = 907 Score = 896 bits (2316), Expect = 0.0, Method: Compositional matrix adjust. Identities = 449/885 (50%), Positives = 604/885 (68%), Gaps = 18/885 (2%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM QY EIK+ NP L+FYRMGDFYELFF+DA +ASR LGITLTKRGKHLG DIPMCG Sbjct: 24 SPMMEQYHEIKAANPGLLLFYRMGDFYELFFEDAEIASRALGITLTKRGKHLGADIPMCG 83 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPV ++ Y+ +LI +GHR+A+CEQ E P A+ R KS+VRR+VVRL+TPGTLTED LL Sbjct: 84 VPVERSDDYLHRLIALGHRVAVCEQTEDPAAARAR--KSVVRRDVVRLITPGTLTEDTLL 141 Query: 146 SPTDSNYLMAVARIRT-----EWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 +NYL+A+AR R +AWIDISTG F ++ + L + + RI+P E I Sbjct: 142 DARANNYLLAIARARGSSGADRIGLAWIDISTGEFCVTECSTGELAATLARINPNEAIVP 201 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 + AE L V +VF D + +E R+ DY+ + T+D + S++E TAA Sbjct: 202 DALYGDAELAPTLRELAAVTPLTRDVF-DSATAERRLCDYFAVATMDGLAALSRLEATAA 260 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 AA ++Y+ +TQ+ +P + P RE +T+ ID A R+NLE+ RTL+G R SLL ID Sbjct: 261 AACVTYVDRTQLGKRPPLSPPAREASGTTMAIDPATRANLELTRTLAGERRGSLLDAIDC 320 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 ++T AG RL A+R+A+PLTD+ I RLD++ F + L I+ L+++PD+ R+L+R Sbjct: 321 TVTAAGSRLLAQRLAAPLTDAAAIARRLDAVEAFAADSGLREQIRSSLRAAPDMARALAR 380 Query: 381 LKIGRGEPKDIAVIRDGIRSGINIL-NLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 L +GRG P+D+A +RDGIR+ +L L P+E+ A+ L++ + L L L Sbjct: 381 LSLGRGGPRDLANLRDGIRAADEVLTQLGQLATPPQEISAAIAALQRPSRELCAELGRAL 440 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 +DDLP KRDGGF+RDG + LDETR LRD S+ ++AS+Q +YA++T IK LKI+HNN L Sbjct: 441 ADDLPLLKRDGGFVRDGYEPVLDETRKLRDASRLVVASMQARYADDTGIKTLKIRHNNVL 500 Query: 500 GYFIEVTSSSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GYF+EV++ ++ L + FIHRQT++ RFTT EL ++E +I NA + AL +E Sbjct: 501 GYFVEVSAQHGEKLMAAPLNAT--FIHRQTLAGQVRFTTAELGEIEAKIANAGDRALGLE 558 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 LE F+ LS I + L A+ A++D++ ALA LA + NY RP +D S +F ++ GR Sbjct: 559 LEIFDRLSALIDAAGDDLRAAAHAFALLDVATALAKLASDDNYVRPEVDESLSFAIEGGR 618 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ LK+ + +PFIAN CDLS + SG++WLLTGPNM GKSTFLRQNALI ++AQ Sbjct: 619 HPVVEQALKK-AGEPFIANACDLSPGPAQKSGQIWLLTGPNMAGKSTFLRQNALIALLAQ 677 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPAS A IGIVD+LFSRVG+AD+LA GRSTFMVEM+ETA+ILNQA+ ++ VILDEI Sbjct: 678 VGSFVPASRARIGIVDRLFSRVGAADDLARGRSTFMVEMVETAAILNQASERALVILDEI 737 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGTAT DGLSIAWA IE+LHE NRCR L ATH+HELT LS L R NAT++V + Sbjct: 738 GRGTATFDGLSIAWAAIEHLHEQNRCRTLFATHYHELTALSAKLPRLFNATVRVKEWRGE 797 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK----DMRLYY 854 ++FLH+V+PG AD SYGIQV KLAGLP +V++RA +L E K D+ L+ Sbjct: 798 VVFLHEVLPGSADRSYGIQVAKLAGLPASVVARAKTVLAKLEANDRGQPKTLIDDLPLFA 857 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 S+ + L +E +K L+ DEM+P AL LYA+KA Sbjct: 858 ITALAPAEAAPPSEAEPL-IEALKALHPDEMTPREALDALYALKA 901 >gi|115522274|ref|YP_779185.1| DNA mismatch repair protein MutS [Rhodopseudomonas palustris BisA53] gi|122298027|sp|Q07V29|MUTS_RHOP5 RecName: Full=DNA mismatch repair protein mutS gi|115516221|gb|ABJ04205.1| DNA mismatch repair protein MutS [Rhodopseudomonas palustris BisA53] Length = 906 Score = 892 bits (2306), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/891 (49%), Positives = 610/891 (68%), Gaps = 17/891 (1%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E L +PMM QY EIK+ NP L+FYRMGDFYELFF+DA +A+R LGITLTKRGKH G+ Sbjct: 18 EALTRVSPMMEQYHEIKAANPGLLLFYRMGDFYELFFEDAEIAARALGITLTKRGKHKGQ 77 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 DIPMCGVPV ++ Y+ +LI +GHR+A+CEQ E P A+ R KS+VRR+VVRL+TPGTL Sbjct: 78 DIPMCGVPVERSDDYLHRLIALGHRVAVCEQTEDPAAARAR--KSVVRRDVVRLITPGTL 135 Query: 140 TEDQLLSPTDSNYLMAVARIRT-----EWAIAWIDISTGIFKISTSNHDRLISDIMRIDP 194 TED LL +NYL+A+AR+R +AWIDIST F ++ L + + RI+P Sbjct: 136 TEDTLLDARTNNYLLAIARVRGSTGGDRLGLAWIDISTAEFIVTECALGELAATLARINP 195 Query: 195 REIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 E I ++ S E L L V +VF D + +E R+ DY+ + T+D + S+ Sbjct: 196 NEAIVTDALYSDPELGPLLRELAAVTPLTRDVF-DSATAERRLCDYFAVATMDGLAAMSR 254 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSL 314 +E TAAAA I+Y+++TQ+ KP + P RE +T+ ID A R+NLE+ RTL+G R SL Sbjct: 255 LEATAAAACITYVERTQLGQKPPLSPPSREIAGATMAIDPATRANLELTRTLAGERRGSL 314 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L ID ++T AG RL A+R+A+PLTD+ I RLD++ F+ +PIL + ++ L+++PD+ Sbjct: 315 LDAIDCTVTAAGSRLLAQRLAAPLTDAGAIAHRLDAVEAFVADPILRDGLRATLRAAPDL 374 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLK-NDLPEELRGAVEKLKKLPQSLEK 433 R+L+RL +GRG P+D+A +RDG+ + L LP+E+ A+ L++ + L Sbjct: 375 ARALARLSVGRGGPRDLAALRDGLLAADAALAQLAAATSLPQEILAAMAALRRPSRQLAD 434 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 S L+D+LP KRDGGF+R A+LDETR+LRD S++++A++Q +YA+ +K LKI Sbjct: 435 EFSRALADELPLQKRDGGFVRANYQAALDETRALRDASRQVVAAMQARYADAAGVKGLKI 494 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +HNN LGYF+EVT+ L FIHRQT++ RFTT EL ++E +I NA Sbjct: 495 RHNNVLGYFVEVTAQHGERLMA-APMNATFIHRQTLAGQVRFTTAELGEIEAKIANAGER 553 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +ELE FE L+ +I ++ L A+Q A +D+++ALA LA + NY RP +D S +F Sbjct: 554 ALGLELEIFEKLTAMVIAATDDLRAAAQAFATLDVTLALAKLAIDDNYVRPEVDGSLSFA 613 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 ++ GRHP+VE+ LK+ +PFIAN CDLS ++SG++WL+TGPNM GKSTFLRQNALI Sbjct: 614 IEGGRHPVVEQALKRDG-QPFIANACDLSPGPAQSSGQIWLITGPNMAGKSTFLRQNALI 672 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 ++AQ+G++VPA+ A IGIVD+LFSRVG+AD+LA GRSTFMVEM+ETA ILNQA+ ++ V Sbjct: 673 ALLAQIGAFVPAARARIGIVDRLFSRVGAADDLARGRSTFMVEMVETAVILNQASERALV 732 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ILDEIGRGTAT DGLSIAWA IE+LHE+NRCR L ATH+HELT LS L R NAT++V Sbjct: 733 ILDEIGRGTATFDGLSIAWAAIEHLHESNRCRALFATHYHELTALSGKLPRVFNATVRVK 792 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE-----KLYHHNQK 848 + + ++FLH+V+PG AD SYGIQV KLAGLP +VI+RA +L E + Sbjct: 793 EWHGEVVFLHEVMPGSADRSYGIQVAKLAGLPPSVIARAKTVLAKLEANDRGQSARALAD 852 Query: 849 DMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 D+ L+ + ++ ++L + ++ L+ DE++P AL LYA+KA Sbjct: 853 DLPLFALTARAPAEALPPTEAEQL-IAALQALHPDELTPREALDALYALKA 902 >gi|189083210|sp|Q21CE8|MUTS_RHOPB RecName: Full=DNA mismatch repair protein mutS Length = 905 Score = 891 bits (2303), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/885 (50%), Positives = 607/885 (68%), Gaps = 17/885 (1%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM QY EIK+ NP L+FYRMGDFYELFF+DA +A+R LGITLTKRGKH G+DIPMCG Sbjct: 22 SPMMEQYHEIKAANPGLLLFYRMGDFYELFFEDAEIAARALGITLTKRGKHKGQDIPMCG 81 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPV ++ Y+ +LI +GHR+A+CEQ E P A+ R KS+VRR+VVRL+TPGTLTED LL Sbjct: 82 VPVERSDDYLHRLIALGHRVAVCEQTEDPAAARAR--KSVVRRDVVRLITPGTLTEDTLL 139 Query: 146 SPTDSNYLMAVARIRTEWA-----IAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 +NYL+A+AR R +AWIDIST F ++ L + + RI+P E I + Sbjct: 140 DARANNYLLAIARARASAGADRIGLAWIDISTAEFIVTECAPAELAATLARINPNEAIVT 199 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 + S E L L V +VF D + +E R+ DY+ + T+D + S++E TAA Sbjct: 200 DALYSDPELGPLLRELPAVTPLTRDVF-DSATAERRLCDYFAVATMDGLSAMSRLEATAA 258 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 AA ++YI +TQ+ KP + P RE ST+ ID A R+NLE+ RTLSG R SLL ID Sbjct: 259 AACVTYIDRTQLGKKPPLSPPSREATGSTMAIDPATRANLELTRTLSGERRGSLLDAIDC 318 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 ++T AG RL A+R+A+PLTD +I RLD++ + +P L ++ L+++PD+ R+L+R Sbjct: 319 TVTAAGSRLLAQRLAAPLTDVEQIAQRLDAVAALLPDPGLREALRATLRAAPDMSRALAR 378 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP-EELRGAVEKLKKLPQSLEKTLSSML 439 L +GRG P+D+A +RDG+ + L ++P +E++ A+ L++ + L + S L Sbjct: 379 LSVGRGGPRDLAALRDGLLAADQALAQLGALEVPPKEIQTAMAALRRPSRDLAQEFSRAL 438 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 +DDLP KRDGGF+R+G +LDETR LRD S+ I+A++Q +YA++ +K LKI+HNN L Sbjct: 439 ADDLPLMKRDGGFVREGYHDALDETRKLRDDSRLIVAAMQARYADDCGVKGLKIRHNNVL 498 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GYF+EVT+ L + FIHRQT++ TRFTT EL ++E +I NA + AL +EL Sbjct: 499 GYFVEVTAQHGDKLMAPPLNLT-FIHRQTLAGQTRFTTAELGEIEAKIANAGDRALGLEL 557 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E FE L + ++ L A+ A +D+++ALA LA + NY RP +D S +F ++ GRH Sbjct: 558 EIFERLVALVQAATDDLRAAAHGFAALDVTLALAKLAVDDNYVRPEVDGSLSFAIEGGRH 617 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE+ L++ +PFIAN CDLS + SG++WL+TGPNM GKSTFLRQNALI ++AQ+ Sbjct: 618 PVVEQALRRDG-QPFIANACDLSPGPGQQSGQIWLITGPNMAGKSTFLRQNALIALLAQI 676 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPAS A IGIVD+LFSRVG+AD+LA GRSTFMVEM+ETA ILNQA+ ++ VILDEIG Sbjct: 677 GSFVPASRARIGIVDRLFSRVGAADDLARGRSTFMVEMVETAVILNQASERALVILDEIG 736 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DGLSIAWA IE+LHE+NRCR L ATH+HELT LS L R NAT++V + + + Sbjct: 737 RGTATFDGLSIAWAAIEHLHESNRCRSLFATHYHELTALSAKLPRLFNATVRVKEWHGDV 796 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ-----KDMRLYY 854 +FLH+V+PG AD SYGIQV KLAGLP +VI+RA +L E +D+ L+ Sbjct: 797 VFLHEVLPGSADRSYGIQVAKLAGLPPSVITRAKSVLAKLEAQDRGQSARALAEDLPLFA 856 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + + S+ ++L +E +K L+ DE+SP AL LYA+KA Sbjct: 857 VTARAAAEPSPPSEAERL-IEALKALHPDELSPREALDALYALKA 900 >gi|39933589|ref|NP_945865.1| DNA mismatch repair protein MutS [Rhodopseudomonas palustris CGA009] gi|48428291|sp|P61670|MUTS_RHOPA RecName: Full=DNA mismatch repair protein mutS gi|39647435|emb|CAE25956.1| DNA mismatch repair protein mutS [Rhodopseudomonas palustris CGA009] Length = 907 Score = 891 bits (2302), Expect = 0.0, Method: Compositional matrix adjust. Identities = 446/885 (50%), Positives = 606/885 (68%), Gaps = 18/885 (2%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM QY EIK+ NP L+FYRMGDFYELFF+DA +ASR LGITLTKRGKHLG DIPMCG Sbjct: 24 SPMMEQYHEIKAANPGLLLFYRMGDFYELFFEDAEIASRALGITLTKRGKHLGADIPMCG 83 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPV ++ Y+ +LI +GHR+A+CEQ E P A+ R KS+VRR+VVRL+TPGTLTED LL Sbjct: 84 VPVERSDDYLHRLIALGHRVAVCEQTEDPAAARAR--KSVVRRDVVRLITPGTLTEDTLL 141 Query: 146 SPTDSNYLMAVARIRTEWA-----IAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 +NYL+A+AR R +AWIDISTG F ++ + L + + RI+P E I Sbjct: 142 DARANNYLLAIARARGSAGADRIGLAWIDISTGEFCVTECSTAELAATLARINPNEAIVP 201 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 + S E L V +VF D + +E R+ DY+ + T+D + S++E TAA Sbjct: 202 DALYSDTELAPTLRELAAVTPLTRDVF-DSATAERRLCDYFAVATMDGLAALSRLEATAA 260 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 AA ++Y+ +TQ+ +P + P RE ST+ ID A R+NLE+ RTL+G R SLL ID Sbjct: 261 AACVTYVDRTQLGKRPPLSPPAREATGSTMAIDPATRANLELTRTLAGERRGSLLDAIDC 320 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 ++T AG RL A+R+A+PLTD+ I RLD++ F + L I+ L+++PD+ R+L+R Sbjct: 321 TVTAAGSRLLAQRLAAPLTDAATIARRLDAVEAFAVDSGLREQIRSSLRAAPDMARALAR 380 Query: 381 LKIGRGEPKDIAVIRDGIRSGINIL-NLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 L +GRG P+D+A +RDGIR+ +L L P+E+ A+ L++ + L L L Sbjct: 381 LSLGRGGPRDLANLRDGIRAADEVLVQLAQLASPPQEIASAMAALQRPSRELCAELGRAL 440 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 +DDLP KRDGGF+R+G + +LDETR LRD S+ ++AS+Q +YA++T IK LKI+HNN L Sbjct: 441 ADDLPLLKRDGGFVREGYEPALDETRKLRDASRLVVASMQARYADDTGIKALKIRHNNVL 500 Query: 500 GYFIEVTSSSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GYF+EV++ ++ L + FIHRQT++ RFTT EL ++E +I NA + AL +E Sbjct: 501 GYFVEVSAQHGEKLMAPPLNAT--FIHRQTLAGQVRFTTAELGEIEAKIANAGDRALGLE 558 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 LE F+ L+ +I + L A+ A++D++ ALA LA + NY RP +D S F ++ GR Sbjct: 559 LEIFDRLAGSIDAAGDDLRAAAHAFALLDVATALAKLASDDNYVRPEVDESLAFAIEGGR 618 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ LK+ + +PFIAN CDLS + +G++WLLTGPNM GKSTFLRQNALI ++AQ Sbjct: 619 HPVVEQALKR-AGEPFIANACDLSPGPAQKNGQIWLLTGPNMAGKSTFLRQNALIALLAQ 677 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA A IGIVD+LFSRVG+AD+LA GRSTFMVEM+ETA+ILNQA+ ++ VILDEI Sbjct: 678 VGSFVPAIRARIGIVDRLFSRVGAADDLARGRSTFMVEMVETAAILNQASERALVILDEI 737 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGTAT DGLSIAWA IE+LHE NRCR L ATH+HELT LS L R NAT++V + Sbjct: 738 GRGTATFDGLSIAWAAIEHLHEQNRCRSLFATHYHELTALSAKLPRLFNATVRVKEWRGE 797 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK----DMRLYY 854 ++FLH+V+PG AD SYGIQV KLAGLP +V+SRA +L E K D+ L+ Sbjct: 798 VVFLHEVLPGSADRSYGIQVAKLAGLPPSVVSRAKAVLAKLEANDRGQPKTLIDDLPLFA 857 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + S+ ++L ++ +K L+ DEM+P AL LYA+KA Sbjct: 858 ITARAPAEAAPPSEAEQL-IDAVKALHPDEMTPREALDALYALKA 901 >gi|192288943|ref|YP_001989548.1| DNA mismatch repair protein MutS [Rhodopseudomonas palustris TIE-1] gi|192282692|gb|ACE99072.1| DNA mismatch repair protein MutS [Rhodopseudomonas palustris TIE-1] Length = 907 Score = 891 bits (2302), Expect = 0.0, Method: Compositional matrix adjust. Identities = 445/885 (50%), Positives = 606/885 (68%), Gaps = 18/885 (2%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM QY EIK+ NP L+FYRMGDFYELFF+DA +ASR LGITLTKRGKHLG DIPMCG Sbjct: 24 SPMMEQYHEIKAANPGLLLFYRMGDFYELFFEDAEIASRALGITLTKRGKHLGADIPMCG 83 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPV ++ Y+ +LI +GHR+A+CEQ E P A+ R KS+VRR+VVRL+TPGTLTED LL Sbjct: 84 VPVERSDDYLHRLIALGHRVAVCEQTEDPAAARAR--KSVVRRDVVRLITPGTLTEDTLL 141 Query: 146 SPTDSNYLMAVARIRTEWA-----IAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 +NYL+A+AR R +AWIDISTG F ++ L + + RI+P E I Sbjct: 142 DARANNYLLAIARARGSAGADRIGLAWIDISTGEFCVTECTTAELAATLARINPNEAIVP 201 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 + S E L V +VF D + +E R+ DY+ + T+D + S++E TAA Sbjct: 202 DALYSDTELAPTLRELAAVTPLTRDVF-DSATAERRLCDYFAVATMDGLAALSRLEATAA 260 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 AA ++Y+ +TQ+ +P + P RE +T+ ID A R+NLE+ RTL+G R SLL ID Sbjct: 261 AACVTYVDRTQLGKRPPLSPPSREAAGTTMAIDPATRANLELTRTLAGERRGSLLDAIDC 320 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 ++T AG RL A+R+A+PLTD+ I RLD++ F + L I+ L+++PD+ R+L+R Sbjct: 321 TVTAAGSRLLAQRLAAPLTDAAAIARRLDAVEAFTGDAGLREQIRSSLRAAPDMARALAR 380 Query: 381 LKIGRGEPKDIAVIRDGIRSGINIL-NLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 L +GRG P+D+A +RDGIR+ ++ L P+E+ A+ L++ ++L L L Sbjct: 381 LSLGRGGPRDLANLRDGIRAADEVIAQLGQLASPPQEIASAMAALQRPSRALCAELGRAL 440 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 +DDLP KRDGGF+R+G + +LDETR LRD S+ ++AS+Q +YA++T IK LKI+HNN L Sbjct: 441 ADDLPLLKRDGGFVREGYEPALDETRKLRDASRLVVASMQARYADDTGIKALKIRHNNVL 500 Query: 500 GYFIEVTSSSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GYF+EV++ ++ L + FIHRQT++ RFTT EL ++E +I NA + AL +E Sbjct: 501 GYFVEVSAQHGDKLMAPPLNAT--FIHRQTLAGQVRFTTAELGEIEAKIANAGDRALGLE 558 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 LE F+ L+ I E L A+ A++D++ ALA LA + NY RP +D S +F ++ GR Sbjct: 559 LEIFDRLAAMIDAAGEDLRAAAHAFALLDVATALAKLASDDNYVRPEVDESLSFAIEGGR 618 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ LK+ + +PFIAN CDLS + +G++WLLTGPNM GKSTFLRQNALI ++AQ Sbjct: 619 HPVVEQALKK-AGEPFIANACDLSPGPAQTNGQIWLLTGPNMAGKSTFLRQNALIALLAQ 677 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA A IGIVD+LFSRVG+AD+LA GRSTFMVEM+ETA+ILNQA+ ++ VILDEI Sbjct: 678 VGSFVPAIRARIGIVDRLFSRVGAADDLARGRSTFMVEMVETAAILNQASERALVILDEI 737 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGTAT DGLSIAWA IE+LHE NRCR L ATH+HELT LS L R NAT++V + Sbjct: 738 GRGTATFDGLSIAWAAIEHLHEQNRCRSLFATHYHELTALSAKLPRLFNATVRVKEWRGE 797 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK----DMRLYY 854 ++FLH+V+PG AD SYGIQV KLAGLP +V+SRA +L E K D+ L+ Sbjct: 798 VVFLHEVLPGSADRSYGIQVAKLAGLPPSVVSRAKAVLAKLEANDRGQPKTLIDDLPLFA 857 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + S+ ++L ++ +K L+ DEM+P AL LYA+KA Sbjct: 858 ITARAPAEAAPPSEAEQL-IDAVKALHPDEMTPREALDALYALKA 901 >gi|92116234|ref|YP_575963.1| DNA mismatch repair protein MutS [Nitrobacter hamburgensis X14] gi|122418637|sp|Q1QQJ4|MUTS_NITHX RecName: Full=DNA mismatch repair protein mutS gi|91799128|gb|ABE61503.1| DNA mismatch repair protein MutS [Nitrobacter hamburgensis X14] Length = 907 Score = 890 bits (2299), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/886 (49%), Positives = 610/886 (68%), Gaps = 17/886 (1%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY+EIK+ NP L+FYRMGDFYELFF+DA +AS LGITLTKRGKH G DIPMCG Sbjct: 22 TPMMEQYLEIKAANPGLLLFYRMGDFYELFFEDAEIASCTLGITLTKRGKHQGADIPMCG 81 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPV ++ Y+ +LI GHR+A+CEQ+E P A++RGNKS+VRR+VVRL+TPGTLTED LL Sbjct: 82 VPVERSDDYLHRLIAAGHRVAVCEQMEDPAAARRRGNKSVVRRDVVRLITPGTLTEDTLL 141 Query: 146 SPTDSNYLMAVARIRT-----EWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 +NYL+A+AR R A+AWIDIST F ++ + L + + RI+P E+I S Sbjct: 142 DARANNYLLALARARASSGGNRIALAWIDISTAEFIVTECSTGELAATLARINPNEVIVS 201 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 + + +L L +V +VF D + +E R+ DY+ + T+D + S +E TAA Sbjct: 202 DALYGDPDMAALLRELPSVTPLTRDVF-DGATAERRLCDYFAVATMDGLSAMSWLEATAA 260 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 AAA++Y+ +TQ+ +P + P RE ST+ ID A R+NLE+ RTL+G R SLL ID Sbjct: 261 AAAVTYVDRTQIGKRPPLSPPSREAAGSTMAIDPATRANLELTRTLAGERRGSLLDAIDR 320 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 ++T AG RL A+R+A+PLTD I RLD++ F + + I+ IL+++PD+ R+L+R Sbjct: 321 TMTAAGSRLLAQRLAAPLTDIAAIARRLDAVAAFTSDSAARDDIRTILRTAPDMSRALAR 380 Query: 381 LKIGRGEPKDIAVIRDGIRSGINIL-NLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 L +GRG P+D+A +RDGI + L L D P+++ A++ L++ + L + L L Sbjct: 381 LSVGRGGPRDLAGLRDGIMAADRTLARLSALPDPPQDIVAAMQALRRPSRELARELGEAL 440 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 +++LP KRDGGF R+G + +LDE R LRD S+ ++A++Q +Y EET +K LKI+HNN L Sbjct: 441 AENLPLMKRDGGFAREGYEPTLDEARKLRDDSRLVVAAMQARYTEETGVKTLKIRHNNVL 500 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GYF+EVT+ L FIHRQT++ RFTT EL ++E RI NA + AL +EL Sbjct: 501 GYFVEVTAQHGDKLTS-APLNATFIHRQTLAGQVRFTTSELGEIEARIANAGDRALGLEL 559 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F+ L+ ++E + L A+ A +D++ +LA LA ++N+ RP +D S F ++ GRH Sbjct: 560 EIFDRLAAVVVEAGDDLRAAAHAFAQLDVAASLAKLATDENFTRPEVDASLGFAIEGGRH 619 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE+ LK+ + +PFIAN CDLS + SG++WLLTGPNM GKSTFLRQNALI +MAQ+ Sbjct: 620 PVVEQALKR-AGQPFIANACDLSPGPGQTSGQIWLLTGPNMAGKSTFLRQNALIALMAQI 678 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPA+ A IG++D+LFSRVG+AD+LA GRSTFMVEM+ETA ILNQA+ ++ VILDEIG Sbjct: 679 GSFVPATRARIGMIDRLFSRVGAADDLARGRSTFMVEMVETAVILNQASERALVILDEIG 738 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DGLSIAWA IE+LHE N+CR L ATH+HELT LS L R NAT++V + + + Sbjct: 739 RGTATFDGLSIAWAAIEHLHEANKCRALFATHYHELTALSAKLPRLFNATVRVKEWHGEV 798 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ-----KDMRLYY 854 +FLH+V+PG AD SYGIQV KLAGLP +V++RA +L E + D+ L+ Sbjct: 799 VFLHEVLPGAADRSYGIQVAKLAGLPPSVVARAKSVLAKLEAQDRGSTVRALVDDLPLF- 857 Query: 855 PEIQTKESKNNLSKNDKL-FVEKIKCLNLDEMSPLTALKTLYAVKA 899 + ++ + + + +E +K L+ DEMSP AL+ LYA+KA Sbjct: 858 -AVPSRAADESAPPGEAAPLIEALKALHPDEMSPREALEALYALKA 902 >gi|90421887|ref|YP_530257.1| DNA mismatch repair protein MutS [Rhodopseudomonas palustris BisB18] gi|90103901|gb|ABD85938.1| DNA mismatch repair protein MutS [Rhodopseudomonas palustris BisB18] Length = 882 Score = 887 bits (2293), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/883 (50%), Positives = 605/883 (68%), Gaps = 17/883 (1%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY EIK+ NP L+FYRMGDFYELFF+DA +A+R LGITLTKRGKH G+DIPMCGVP Sbjct: 1 MMEQYHEIKAANPGLLLFYRMGDFYELFFEDAEIAARALGITLTKRGKHKGQDIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 V ++ Y+ +LI +GHR+A+CEQ E P A+ R KS+VRR+VVRL+TPGTLTED LL Sbjct: 61 VERSDDYLHRLIALGHRVAVCEQTEDPAAARAR--KSVVRRDVVRLITPGTLTEDTLLDA 118 Query: 148 TDSNYLMAVARIRTEWA-----IAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK 202 +NYL+A+AR R +AWIDIST F ++ L + + RI+P E I ++ Sbjct: 119 RANNYLLAIARARASAGADRIGLAWIDISTAEFIVTECAPAELAATLARINPNEAIVTDA 178 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 S E L L V +VF D + +E R+ DY+ + T+D + S++E TAAAA Sbjct: 179 LYSDPELGPLLRELPAVTPLTRDVF-DSATAERRLCDYFAVATMDGLSAMSRLEATAAAA 237 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 ++YI +TQ+ KP + P RE ST+ ID A R+NLE+ RTLSG R SLL ID ++ Sbjct: 238 CVTYIDRTQLGKKPPLSPPSREATGSTMAIDPATRANLELTRTLSGERRGSLLDAIDCTV 297 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T AG RL A+R+A+PLTD +I RLD++ + +P L ++ L+++PD+ R+L+RL Sbjct: 298 TAAGSRLLAQRLAAPLTDVEQIAQRLDAVAALLPDPGLREALRATLRAAPDMSRALARLS 357 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLP-EELRGAVEKLKKLPQSLEKTLSSMLSD 441 +GRG P+D+A +RDG+ + L ++P +E++ A+ L++ + L + S L+D Sbjct: 358 VGRGGPRDLAALRDGLLAADQALAQLGALEVPPKEIQTAMAALRRPSRDLAQEFSRALAD 417 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 DLP KRDGGF+R+G +LDETR LRD S+ I+A++Q +YA++ +K LKI+HNN LGY Sbjct: 418 DLPLMKRDGGFVREGYHDALDETRKLRDDSRLIVAAMQARYADDCGVKGLKIRHNNVLGY 477 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 F+EVT+ L + FIHRQT++ TRFTT EL ++E +I NA + AL +ELE Sbjct: 478 FVEVTAQHGDKLMAPPLNLT-FIHRQTLAGQTRFTTAELGEIEAKIANAGDRALGLELEI 536 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 FE L + ++ L A+ A +D+++ALA LA + NY RP +D S +F ++ GRHP+ Sbjct: 537 FERLVALVQAATDDLRAAAHGFAALDVTLALAKLAVDDNYVRPEVDGSLSFAIEGGRHPV 596 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE+ L++ +PFIAN CDLS + SG++WL+TGPNM GKSTFLRQNALI ++AQ+GS Sbjct: 597 VEQALRRDG-QPFIANACDLSPGPGQQSGQIWLITGPNMAGKSTFLRQNALIALLAQIGS 655 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPAS A IGIVD+LFSRVG+AD+LA GRSTFMVEM+ETA ILNQA+ ++ VILDEIGRG Sbjct: 656 FVPASRARIGIVDRLFSRVGAADDLARGRSTFMVEMVETAVILNQASERALVILDEIGRG 715 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 TAT DGLSIAWA IE+LHE+NRCR L ATH+HELT LS L R NAT++V + + ++F Sbjct: 716 TATFDGLSIAWAAIEHLHESNRCRSLFATHYHELTALSAKLPRLFNATVRVKEWHGDVVF 775 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ-----KDMRLYYPE 856 LH+V+PG AD SYGIQV KLAGLP +VI+RA +L E +D+ L+ Sbjct: 776 LHEVLPGSADRSYGIQVAKLAGLPPSVITRAKSVLAKLEAQDRGQSARALAEDLPLFAVT 835 Query: 857 IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + + S+ ++L +E +K L+ DE+SP AL LYA+KA Sbjct: 836 ARAAAEPSPPSEAERL-IEALKALHPDELSPREALDALYALKA 877 >gi|86747654|ref|YP_484150.1| DNA mismatch repair protein MutS [Rhodopseudomonas palustris HaA2] gi|123004710|sp|Q2J2S1|MUTS_RHOP2 RecName: Full=DNA mismatch repair protein mutS gi|86570682|gb|ABD05239.1| DNA mismatch repair protein MutS [Rhodopseudomonas palustris HaA2] Length = 911 Score = 885 bits (2286), Expect = 0.0, Method: Compositional matrix adjust. Identities = 448/887 (50%), Positives = 607/887 (68%), Gaps = 22/887 (2%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM QY EIK+ NP L+FYRMGDFYELFF+DA +ASR LGITLTKRGKH G DIPMCG Sbjct: 28 SPMMEQYHEIKAANPGLLLFYRMGDFYELFFEDAEIASRALGITLTKRGKHQGMDIPMCG 87 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPV ++ Y+ +LI +GHR+A+CEQ E P A+ R KS+VRR+VVRL+TPGTLTED LL Sbjct: 88 VPVERSDDYLHRLIALGHRVAVCEQTEDPAAARAR--KSVVRRDVVRLITPGTLTEDTLL 145 Query: 146 SPTDSNYLMAVARIRT-----EWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 +NYL+A+AR R +AWIDISTG F ++ L + + RI+P E I S Sbjct: 146 DARANNYLLAIARARGSSGTDRIGLAWIDISTGEFSVTECATGELSATLARINPNEAIVS 205 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 + S AE L V +VF D + +E R+ DY+ + T+D + S++E AA Sbjct: 206 DALYSDAELGPSLRELAAVTPLTRDVF-DSATAERRLCDYFAVATMDGLAALSRLEAAAA 264 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 AA ++Y+ +TQ+ +P + P RE +T+ ID A R+NLE+ RTL+G R SLL ID Sbjct: 265 AACVTYVDRTQLGKRPPLSPPSREATGATMAIDPATRANLELTRTLAGERRGSLLDAIDC 324 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 ++T AG RL A+R+A+PLTD+ I RLD++ F+ P L I+ L+++PD+ R+L+R Sbjct: 325 TVTAAGSRLLAQRLAAPLTDAAAIARRLDAVEVFVVAPALREQIRSALRAAPDMARALAR 384 Query: 381 LKIGRGEPKDIAVIRDGIRS---GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 L +GRG P+D+A +RDGI + G+ L+ P+E+ A+ L++ + L L Sbjct: 385 LSLGRGGPRDLASLRDGIVAADQGLQQLSQLTAP--PQEIAAAMAALRRPSRDLCDELGR 442 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 L+DDLP KRDGGF+RDG +A+LDETR LRD S+ ++A++Q +YA++T +K LKI+HNN Sbjct: 443 ALADDLPLQKRDGGFVRDGYEAALDETRKLRDASRLVVAAMQARYADDTGVKGLKIRHNN 502 Query: 498 NLGYFIEVTSSSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 LGYF+EVT+ ++ L + FIHRQT++ RFTT EL ++E +I NA + AL Sbjct: 503 VLGYFVEVTAQHGDRLMAPPLNAT--FIHRQTLAGQVRFTTAELGEIEAKIANAGDRALG 560 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +ELE F+ L+ I E L A+ A++D++ ALA LA + NY RP +D S +F ++ Sbjct: 561 LELEIFDRLAALIETAGEDLRAAAHAFALLDVATALAKLASDDNYVRPEVDQSLSFAIEG 620 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE+ LK+ + +PFIAN CDLS + SG++WLLTGPNM GKSTFLRQNALI ++ Sbjct: 621 GRHPVVEQALKR-AGEPFIANACDLSPGPAQASGQIWLLTGPNMAGKSTFLRQNALIALL 679 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ GSYVPA+ A IGIVD+LFSRVG+AD+LA GRSTFMVEM+ETA+ILNQAT ++ VILD Sbjct: 680 AQTGSYVPAARARIGIVDRLFSRVGAADDLARGRSTFMVEMVETAAILNQATERALVILD 739 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGTAT DGLSIAWA IE+LHE NRCR L ATH+HELT LS L R NAT++V + Sbjct: 740 EIGRGTATFDGLSIAWAAIEHLHEQNRCRALFATHYHELTALSAKLPRLFNATVRVKEWR 799 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK----DMRL 852 ++FLH+V+PG AD SYGIQV KLAGLP +V++RA +L E K D+ L Sbjct: 800 GEVVFLHEVLPGSADRSYGIQVAKLAGLPASVVARAKSVLAKLEANDRGQPKALIDDLPL 859 Query: 853 YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + + + S+ ++L + ++ L+ DE+SP AL LYA+KA Sbjct: 860 FAITARAPAEPSPPSEAEQL-IAAVQALHPDELSPREALDALYALKA 905 >gi|298293958|ref|YP_003695897.1| DNA mismatch repair protein MutS [Starkeya novella DSM 506] gi|296930469|gb|ADH91278.1| DNA mismatch repair protein MutS [Starkeya novella DSM 506] Length = 930 Score = 880 bits (2275), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/890 (48%), Positives = 596/890 (66%), Gaps = 19/890 (2%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QYIEIK+ NP SL+FYRMGDFYELFFDDA ASR LGI LTKRGKH G+DIPMCG Sbjct: 39 TPMMAQYIEIKTANPGSLLFYRMGDFYELFFDDAETASRTLGIVLTKRGKHQGEDIPMCG 98 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPV A Y+ KLI GHR+A+CEQIE P EAKKRG KS+V+R+V+RLVTPGTLTED LL Sbjct: 99 VPVERAEEYLHKLIAAGHRVAVCEQIEDPAEAKKRGPKSVVKRDVIRLVTPGTLTEDALL 158 Query: 146 SPTDSNYLMAVARIRTE-------WAIAWIDISTGIFKISTSNHDRLISDIMRIDPREII 198 N L AVAR+R +A+A+ DISTG F+++ ++ RL +D+ RI+P E++ Sbjct: 159 DARRENVLAAVARVRGGDGEDGYVYALAFADISTGSFRVAETDALRLAADLARIEPAELL 218 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++ +K+++ L V P FD + +E R+A ++ + T+D+FGSFS+ E + Sbjct: 219 LADAVYDEPAFKAVWRALPAV-TPLPKEAFDGASAERRLAGFFQVATLDSFGSFSRAELS 277 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AAAA ++Y+++TQ+ +P + P+RE + ID A R+NLEILRT +G R SL ++ Sbjct: 278 AAAAIVAYVERTQLGARPPLNRPQREAAADAMVIDPATRANLEILRTTTGDRAGSLCASV 337 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D ++T AG RL + R+A PLTD +I RLD++ + L ++ L +PD+ R+L Sbjct: 338 DRTVTSAGARLLSRRLAEPLTDPFRIAARLDAVEHLVDETALRAQLRDRLAGAPDLARAL 397 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 SR+ +GR P+D+A I G+ G I L + P EL A L + +L L + Sbjct: 398 SRVALGRSGPRDLAAIGRGLTEGATISALIAASPAPAELAEAARILASVDPTLAAMLGAA 457 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 L D+LP +RDGGF R G LD TR+LRD+S+R++A+L+ +Y EET ++ LKI+HN Sbjct: 458 LDDELPLNRRDGGFTRPGYSEELDATRALRDESRRVVAALERRYVEETGVRALKIRHNAV 517 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 LGYF+EV+ +A L++ F+HRQTM+ RFT+ EL +LE +I +A AL +E Sbjct: 518 LGYFVEVSQQNADRLREP-PFDAVFMHRQTMAGAMRFTSTELAELEAKIASAGERALALE 576 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 F+ L+ A++ SE++ ++ +A+ID++ LA LA ++ + RP + + +F+++ GR Sbjct: 577 QRIFDELAAAVLTHSEAIRACAEALAVIDVTAGLAKLAVDETHVRPDVHDGLDFLIEGGR 636 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKN----SGKLWLLTGPNMGGKSTFLRQNALIV 674 HP+VE+ L++ PF+ANDC+LS P N SG++WL+TGPNM GKSTFLRQNALI Sbjct: 637 HPVVEQALRRDGG-PFVANDCELSPPEAANRGSTSGRIWLVTGPNMAGKSTFLRQNALIA 695 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 I+AQ G++VPA A IG+VD+LFSRVG+AD+LA GRSTFMVEM+ETA+ILNQAT +S VI Sbjct: 696 ILAQAGAFVPARLAKIGVVDRLFSRVGAADDLARGRSTFMVEMVETAAILNQATERSLVI 755 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDEIGRGTAT DGLSIAWA++E+LHE NRCRGL ATHFHELT LS+ L R NAT++V + Sbjct: 756 LDEIGRGTATFDGLSIAWASLEHLHEVNRCRGLFATHFHELTALSQRLARLVNATVKVKE 815 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----D 849 +IFLH+V+PG AD SYGIQV KLAGLP V+SRA +L E D Sbjct: 816 WEGEVIFLHEVVPGAADRSYGIQVAKLAGLPPAVVSRARAVLTELENADRAAPAQRILDD 875 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + L+ + + + L+ DEM+P AL+ LY +KA Sbjct: 876 LPLFAAINRAPAPAAKADPAAEAVKTALSGLDPDEMTPREALEALYRLKA 925 >gi|75674688|ref|YP_317109.1| DNA mismatch repair protein [Nitrobacter winogradskyi Nb-255] gi|90109849|sp|Q3SVD4|MUTS_NITWN RecName: Full=DNA mismatch repair protein mutS gi|74419558|gb|ABA03757.1| DNA mismatch repair protein MutS [Nitrobacter winogradskyi Nb-255] Length = 888 Score = 879 bits (2271), Expect = 0.0, Method: Compositional matrix adjust. Identities = 453/889 (50%), Positives = 614/889 (69%), Gaps = 23/889 (2%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY+EIK+ NP L+FYRMGDFYELFF+DA +ASR LGITLTKRGKH G DIPMCGVP Sbjct: 1 MMEQYLEIKAANPGLLLFYRMGDFYELFFEDAEIASRALGITLTKRGKHQGADIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 V ++ Y+ +LI GHR+A+CEQ E P A+KRGNKS+VRR+VVRLVTPGTLTED LL Sbjct: 61 VERSDDYLHRLIAAGHRVAVCEQTEDPSAARKRGNKSVVRRDVVRLVTPGTLTEDTLLDA 120 Query: 148 TDSNYLMAVARIRT-----EWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK 202 +NYL+A+AR R +A+AWIDIST F ++ + L + + RI+P E+I S+ Sbjct: 121 RANNYLLALARARASSGVDRFALAWIDISTAEFMVTECGANELAATLARINPNEVIVSDT 180 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 + +L L +V P FD + +E R+ DY+ + T+D + S++E TAAAA Sbjct: 181 LHGDPDLGALLRELPSV-TPLPRDTFDGATAERRLCDYFAVATMDGLSAMSRLEATAAAA 239 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 A++YI +TQ+ +P + P RE ST+ ID A R+NLE+ RTL+G R SLL ID ++ Sbjct: 240 AVTYIDRTQIGQRPPLSPPSREASGSTMAIDPATRANLELTRTLAGERRGSLLDAIDRTM 299 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T AG RL A+R+A+PLTD+ I RLD++ + + I+ IL+++PD+ R+L+RL Sbjct: 300 TAAGSRLLAQRLAAPLTDTAAITRRLDAVAALTADGAARDDIRAILRTAPDMSRALARLS 359 Query: 383 IGRGEPKDIAVIRDGIRSGINIL-NLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 +GRG P+D+A +RDG+ + L L +D PE + A++ L+ + L + L + LS+ Sbjct: 360 LGRGGPRDLAGLRDGVMAADQTLARLAGLSDPPEGIAAAMQALRGPSRELARELGNALSE 419 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 +LP KRDGGF+R+G D +LDE R LRD S+ ++A++Q +YAEET +K LKI+HNN LGY Sbjct: 420 NLPLMKRDGGFVREGYDTALDEARKLRDDSRLVVAAMQARYAEETGVKTLKIRHNNVLGY 479 Query: 502 FIEVTSSSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 F+EVT+ A+ ++ L + FIHRQT++ RFTT EL ++E RI NA AL +EL+ Sbjct: 480 FVEVTAQHANRLMSAPLNAT--FIHRQTLAGQVRFTTSELGEIEARIANAGERALGLELD 537 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F+ L+ I + + NA+ A +D++ + A LA ++NY RP ID S +F ++ GRHP Sbjct: 538 IFDRLAAMAIRNGDEIRNAAHAFAQLDVAASFAKLAIDENYTRPDIDASLSFAIEGGRHP 597 Query: 621 IVEKTLKQQSSKPFIANDCDLSCP-----NDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 +VE+ LK+ + +PFIAN CDLS P SG++WLLTGPNM GKSTFLRQNALI + Sbjct: 598 VVEQALKR-TGQPFIANACDLSPPPPPVEGSGESGQIWLLTGPNMAGKSTFLRQNALIAL 656 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+GS+VPAS A IGI+D+LFSRVG+AD+LA GRSTFMVEM+ETA ILNQA+ ++ VIL Sbjct: 657 MAQVGSFVPASRARIGIIDRLFSRVGAADDLARGRSTFMVEMVETAVILNQASERALVIL 716 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGTAT DGLSIAWATIE+LHE+NRCR L ATH+HELT LS L R NAT++V + Sbjct: 717 DEIGRGTATFDGLSIAWATIEHLHESNRCRALFATHYHELTALSAKLPRLFNATVRVKEW 776 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ-----KDM 850 + ++FLH+V+PG AD SYGIQV +LAGLP +VI+RA +L E + D+ Sbjct: 777 HGEVVFLHEVLPGAADRSYGIQVARLAGLPPSVIARAKSVLAKLEAQDRGSTVRVLVDDL 836 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 L+ +T ES + +E +K L+ DEMSP AL LYA+KA Sbjct: 837 PLFAVTSRTGESAP--TGETSPLIEALKSLHPDEMSPREALDALYALKA 883 >gi|158426338|ref|YP_001527630.1| DNA mismatch repair protein MutS [Azorhizobium caulinodans ORS 571] gi|189030441|sp|A8I275|MUTS_AZOC5 RecName: Full=DNA mismatch repair protein mutS gi|158333227|dbj|BAF90712.1| DNA mismatch repair protein [Azorhizobium caulinodans ORS 571] Length = 931 Score = 875 bits (2260), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/887 (47%), Positives = 601/887 (67%), Gaps = 16/887 (1%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM QY+EIK+ NP SL+FYRMGDFYELFF+DA +AS+ LGI LTKRGKHLG+DIPMCG Sbjct: 40 SPMMAQYVEIKAANPGSLLFYRMGDFYELFFEDAEIASQALGIVLTKRGKHLGEDIPMCG 99 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP+ + Y+ KLI +GHR+A+C+Q+E P EAKKRG+KS+V+R+V+RLVTPGT+TED LL Sbjct: 100 VPLTRSEEYLHKLIALGHRVAVCDQLEDPAEAKKRGSKSVVKRDVIRLVTPGTITEDSLL 159 Query: 146 SPTDSNYLMAVARIRT------EWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 N L+AVAR R ++A+A+ D+STG F++ S+ D L +D+ RIDP EI+ Sbjct: 160 DAKRENVLLAVARTRASGEGAYDYALAFTDVSTGSFRVVASDGDMLAADLARIDPAEILV 219 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 S+ E + + L P FD +E R+A ++ + T D+FGSF++ E A Sbjct: 220 SDAVYDDEELRDFWRGLSTPVTPLPKQSFDGPQAEKRLAAFFGVATADSFGSFARAELIA 279 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 AAA ++YI++TQ+ +P + P+RE ++ ID+ R NLE++RT SG R SLL ID Sbjct: 280 AAAVVAYIERTQLGARPALAPPQREADGGSMLIDAGTRVNLELIRTTSGERRGSLLAAID 339 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 ++T AG RL A R+A PLTD I R D++ F ++ L ++K L ++PD+ R+LS Sbjct: 340 RTVTAAGARLLARRLAEPLTDIAAIRARHDAVGFLVEETELREALRKRLAAAPDLARALS 399 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ +GRG P+D+ I G++ G+ I + F + P ++ L + L + L++ L Sbjct: 400 RISLGRGSPRDLGAIAAGLKEGLAISSAF-GPETPRDIARCARLLAAVEPWLAEELTAAL 458 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 +D+LP +RDGGF+R G D LD TR+LRD+S+R++A+L+ +Y +ET IK+LKI+HN L Sbjct: 459 ADELPLNRRDGGFVRQGYDLDLDSTRALRDESRRVVAALERRYVDETGIKSLKIRHNAVL 518 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GYF+EVT+ +A L+ + F+HRQTM+ RFT++EL DLE+RI +A AL +E Sbjct: 519 GYFVEVTAQNADRLR-EAPFNATFVHRQTMAGAVRFTSVELGDLESRIASAGERALALEQ 577 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 F+ L+ A+IE S + A++ +A +D+ ALA LA ++ Y RP + +F + GRH Sbjct: 578 TIFDRLAAAVIEASRPIREAAEALAELDVLTALARLAVDERYVRPEMTEGVDFAISGGRH 637 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE+ L + PF+ANDCDLS P ++WL+TGPNM GKSTFLRQNALI ++AQ Sbjct: 638 PVVEQALAR-GGGPFVANDCDLSPPETAQDARIWLVTGPNMAGKSTFLRQNALIAVLAQA 696 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 G++VPA A +G+VD+LFSRVG+AD+LA GRSTFMVEM+ETA+ILNQAT +S VILDEIG Sbjct: 697 GAFVPARAARLGVVDRLFSRVGAADDLARGRSTFMVEMVETAAILNQATRRSLVILDEIG 756 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGT+T DG+SIAWA++E+LHE NRCR L ATHFHELT L++ +R NAT++V++ + Sbjct: 757 RGTSTFDGMSIAWASLEHLHEVNRCRALFATHFHELTALTQRCQRLANATVKVTEWQGDV 816 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DMRLYY 854 +FLH+VIPG AD SYGIQV KLAGLP VI+RA +L E + ++ L+ Sbjct: 817 VFLHEVIPGAADRSYGIQVAKLAGLPKMVIARAKAVLTELEAAERVSPAQRLLDELPLFA 876 Query: 855 PEIQTKE--SKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + + + +E++ L+ D ++P AL LY +KA Sbjct: 877 AAARPAPTLAAPTGPHPAEPVLEELDRLDPDALTPRAALDALYRLKA 923 >gi|91974801|ref|YP_567460.1| DNA mismatch repair protein MutS [Rhodopseudomonas palustris BisB5] gi|123166739|sp|Q13ED0|MUTS_RHOPS RecName: Full=DNA mismatch repair protein mutS gi|91681257|gb|ABE37559.1| DNA mismatch repair protein MutS [Rhodopseudomonas palustris BisB5] Length = 923 Score = 873 bits (2256), Expect = 0.0, Method: Compositional matrix adjust. Identities = 445/897 (49%), Positives = 603/897 (67%), Gaps = 30/897 (3%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM QY EIK+ NP L+FYRMGDFYELFF+DA +ASR LGITLTKRGKHLG DIPMCG Sbjct: 28 SPMMEQYHEIKAANPGLLLFYRMGDFYELFFEDAEIASRALGITLTKRGKHLGADIPMCG 87 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPV ++ Y+ +LI +GHR+A+CEQ E P A+ R KS+VRR+VVRL+TPGTLTED LL Sbjct: 88 VPVERSDDYLHRLIALGHRVAVCEQTEDPAAARAR--KSVVRRDVVRLITPGTLTEDTLL 145 Query: 146 SPTDSNYLMAVARIRTEWAI-----AWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 +NYLMA+AR R + AWIDISTG F ++ L + + RI+P E I S Sbjct: 146 DARANNYLMAIARTRGSAGVDRIGLAWIDISTGEFCVTECATGELSATLARINPNEAIVS 205 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 + S AE L V +VF D + +E R+ DY+ + T+D + S++E AA Sbjct: 206 DALYSDAELGPSLRELAAVTPLTRDVF-DSATAERRLCDYFAVATMDGLAALSRLEAAAA 264 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 AA ++Y+ +TQ+ +P + P RE +T+ ID A R+NLE+ RTL G R SLL ID Sbjct: 265 AACVTYVDRTQLGKRPPLSPPAREAAGATMAIDPATRANLELTRTLGGERRGSLLDAIDC 324 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 ++T AG RL A+R+A+PLTD I RLD++ F+ + L I+ L+++PD+ R+L+R Sbjct: 325 TVTAAGSRLLAQRLAAPLTDEAAIARRLDAVAAFVADSALREQIRSALRAAPDMARALAR 384 Query: 381 LKIGRGEPKDIAVIRDGIRSGINIL-NLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 L +GRG P+D+A +RDG+ + +L L P ++ A+ L++ + L + L+ L Sbjct: 385 LSLGRGGPRDLASLRDGVSAADKVLAQLSQLAQPPHDIAAAMAALRRPSRDLCQELARAL 444 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 +DDLP KRDGGF+RDG +A+LDETR LRD S+ ++A++Q +YA+ET +K LKI+HNN L Sbjct: 445 ADDLPLLKRDGGFVRDGYEAALDETRKLRDASRLVVAAMQARYADETGVKGLKIRHNNVL 504 Query: 500 GYFIEVTSSSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GYF+EVT+ ++ L + FIHRQT++ RFTT EL ++E +I NA + AL +E Sbjct: 505 GYFVEVTAQHGDRLMAPPLNAT--FIHRQTLAGQVRFTTAELGEIEAKIANAGDRALGLE 562 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 L+ F+ L+ I + L A+ A++D++ ALA LA NY RP +D S F ++ GR Sbjct: 563 LDIFDRLAAMIDTAGDDLRAAAHAFALLDVATALAKLAVSDNYVRPEVDGSLAFAIEGGR 622 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDK-----------NSGKLWLLTGPNMGGKSTFL 667 HP+VE+ LK+ + +PFIAN CDLS +G++WLLTGPNM GKSTFL Sbjct: 623 HPVVEQALKR-AGEPFIANACDLSPVPPPFPPPLAGEGRVGAGQIWLLTGPNMAGKSTFL 681 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQNALI ++AQ GS+VPAS A IGIVD+LFSRVG+AD+LA GRSTFMVEM+ETA+ILNQA Sbjct: 682 RQNALIALLAQTGSFVPASRARIGIVDRLFSRVGAADDLARGRSTFMVEMVETATILNQA 741 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 T ++ VILDEIGRGTAT DGLSIAWA IE+LHE NRCR L ATH+HELT LS L R N Sbjct: 742 TERALVILDEIGRGTATFDGLSIAWAAIEHLHEQNRCRALFATHYHELTALSAKLPRLFN 801 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE-----KL 842 AT++V + ++FLH+V+PG AD SYGIQV KLAGLP +V++RA +L E + Sbjct: 802 ATVRVKEWRGEVVFLHEVLPGSADRSYGIQVAKLAGLPPSVVARAKSVLAKLEANDRGQS 861 Query: 843 YHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 D+ L+ + S+ ++L +E ++ L+ DE+SP AL LYA+KA Sbjct: 862 ARTLADDLPLFAMTARAPVEPPPPSEAEQL-IEAVRALHPDELSPREALDALYALKA 917 >gi|304392329|ref|ZP_07374270.1| DNA mismatch repair protein MutS [Ahrensia sp. R2A130] gi|303295433|gb|EFL89792.1| DNA mismatch repair protein MutS [Ahrensia sp. R2A130] Length = 883 Score = 873 bits (2255), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/883 (49%), Positives = 594/883 (67%), Gaps = 18/883 (2%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QYIEIK+ NPDSL+FYRMGDFYELFF DA +A+R LGI LTKRGKHLG+DIPMCGVP Sbjct: 1 MMAQYIEIKAANPDSLLFYRMGDFYELFFSDAEIAARALGIALTKRGKHLGEDIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 VH+A+ Y+QKLI +GHR+A+CEQ+E+P EAKKRG KS+V+R+VVRLVTPGT+TED LL P Sbjct: 61 VHSADDYLQKLIALGHRVAVCEQLENPAEAKKRGAKSVVKRDVVRLVTPGTITEDVLLEP 120 Query: 148 TDSNYLMAVARIRT-----EWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK 202 S++L A++R+R EW +A +D+STG F + S RL +D+ R+ P+E+I E Sbjct: 121 GASHWLAALSRVRGGETGDEWGLAAVDLSTGEFLVGASETGRLSADLARLAPKELILPEG 180 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 + + E QP V F+ + + D++ + T+D FG+F++ E +AA+A Sbjct: 181 LPADEMVEHALEGQSFAVQPQPAVMFESQRAAETLQDFFLVATLDGFGTFTRAELSAASA 240 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 I+Y+ KTQ+ +P + P +TLFID+A R+NLE+ +TLSG R+ SLL ++D ++ Sbjct: 241 VIAYLDKTQIGERPALRRPAPMGGGTTLFIDAATRANLELTQTLSGKRDGSLLHSVDRTV 300 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G RL R+A P TD T ++ RLD + ++ L ++ ++K +PD+PR++SRL Sbjct: 301 TAGGSRLLGARLAGPSTDVTLLDRRLDDVAVLVKADFLTAELRDLMKGTPDLPRAISRLA 360 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKND--LPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + RG P D+ + + + ND L L + L+ P ++ L++ LS Sbjct: 361 LNRGGPTDLGAVAASLERATQLCEKLQANDMALSANLSDHLAALRAAPGAVSAELAASLS 420 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D+LP RDGG++R G D LD R L +S+++IA LQ +YAE T +K LKI+HNN LG Sbjct: 421 DELPRLPRDGGYIRTGRDEELDRQRQLSRESRQVIAQLQGQYAEATGVKGLKIRHNNVLG 480 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 YFIEVT+ +A+ L+ D K+RFIHRQ+M+N RFTT EL +LE+ I NA AL IEL Sbjct: 481 YFIEVTAINAAPLQDD---KERFIHRQSMANAMRFTTTELAELESAIANAAGQALTIELS 537 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F+ L + ++ +E L + IA ID++ A A LA Q Y RP +D+S F + GRHP Sbjct: 538 HFDRLRDLVLAHTEELRAVADAIAAIDVAAANAHLAASQGYVRPTLDDSVAFDITAGRHP 597 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE+ L+ Q++ PF+ANDC + + +SG +WLLTGPNMGGKSTFLRQNALI I+AQMG Sbjct: 598 VVEQALRAQAANPFVANDCRIG--GEADSGSIWLLTGPNMGGKSTFLRQNALIAILAQMG 655 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 ++VPA AHIG++D+LFSRVG+AD+LA GRSTFMVEM+ETA+ILNQA +S VILDEIGR Sbjct: 656 AFVPAGAAHIGVIDRLFSRVGAADDLARGRSTFMVEMVETAAILNQAGPRSLVILDEIGR 715 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DGLSIAWA IE LHETNRCR L ATH+HELT LS L R N T++V + N ++ Sbjct: 716 GTATFDGLSIAWAAIENLHETNRCRTLFATHYHELTALSVKLDRLSNVTMKVKEWNGDVV 775 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY-----YP 855 FLH+V G AD SYGIQV LAGLP+ VI+RA +L+ E + P Sbjct: 776 FLHEVGQGSADRSYGIQVAGLAGLPDAVIARAKQVLERLEAGPSSGEGGSGAATLIDELP 835 Query: 856 EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + ++++ + K+ + LDEM+P A + LYA+K Sbjct: 836 LFSARPAPAPINRSSDVEA-KLSDMRLDEMTPREAQEALYALK 877 >gi|209883281|ref|YP_002287138.1| DNA mismatch repair protein MutS [Oligotropha carboxidovorans OM5] gi|209871477|gb|ACI91273.1| DNA mismatch repair protein MutS [Oligotropha carboxidovorans OM5] Length = 912 Score = 867 bits (2241), Expect = 0.0, Method: Compositional matrix adjust. Identities = 446/888 (50%), Positives = 607/888 (68%), Gaps = 20/888 (2%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY+EIK+ NP L+FYRMGDFYELFF+DA ASR LGI LTKRGKH G+DIPMCG Sbjct: 25 TPMMEQYLEIKAANPGLLLFYRMGDFYELFFEDAETASRALGIMLTKRGKHQGEDIPMCG 84 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPV ++ Y+ +LI +GHR+A+CEQ+E P EA+KRG KS+VRR+VVRLVTPGTLTED LL Sbjct: 85 VPVERSDDYLHRLIALGHRVAVCEQMEDPAEARKRGAKSVVRRDVVRLVTPGTLTEDNLL 144 Query: 146 SPTDSNYLMAVARIRT-----EWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 +NYLMA+AR R +AWIDIST F +S + L + + R++P EII Sbjct: 145 DAKTNNYLMAIARTRASNGDDRLGLAWIDISTSEFTVSECSASDLATTLARVNPNEIIVP 204 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNV--FFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + ++L TL P FD + +E R+ DY+ + T+D + S++E T Sbjct: 205 DAIFGD---ETLGPTLREHTAVTPLTRDVFDSASAEQRLCDYFAVATMDGLATLSRLEAT 261 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AAAAA++Y+++TQ+ P + P RED +TL ID A R+NLE+ RTL+G R SLL TI Sbjct: 262 AAAAAVTYVERTQVGKHPPLSPPAREDAGTTLAIDPATRANLELTRTLAGERRGSLLDTI 321 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D ++T AG RL A+R+A+PLTD I D++ F+ + + ++ IL ++PD+ R+L Sbjct: 322 DLTVTAAGSRLLAQRLATPLTDIAAITRCHDAVAAFVADTAATHDLRTILNAAPDMSRAL 381 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLK-NDLPEELRGAVEKLKKLPQSLEKTLSS 437 +RL +GRG P+D+A +RDGI + + + N P+E+ A+ L+K + L + L+ Sbjct: 382 ARLSVGRGGPRDLAGLRDGILAADAAIARLAQMNSPPQEITTAIAALRKPSRDLAEILAR 441 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 L++ LP KRDGGF+R+ DA+LDETRSLRD S+ ++AS+Q +YAE+T +K LKIKHNN Sbjct: 442 ALAEQLPLSKRDGGFVRERYDATLDETRSLRDASRLVVASMQARYAEDTGVKGLKIKHNN 501 Query: 498 NLGYFIEVTSSSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 LGYF+EVT+ ++ L + FIHRQT++ RFTT EL ++E RI NA + AL Sbjct: 502 VLGYFVEVTAQHGDKLMAAPLNAT--FIHRQTLAGQVRFTTSELGEIEARIANAGDRALG 559 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +ELE FE L I + L A+ A++D++ +LA LA EQ+Y RP +D+S F ++ Sbjct: 560 LELEIFERLCAEAIAIGDDLRAAAHAFAVLDVATSLARLAVEQDYVRPDVDDSLAFSIEG 619 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE+ LK+ +PFIAN CDLS + +G++W+LTGPNM GKSTFLRQNALI ++ Sbjct: 620 GRHPVVERALKRDG-QPFIANSCDLSPAPSQANGQIWVLTGPNMAGKSTFLRQNALIALL 678 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+GS+VPA A IG+VD+LFSRVG+AD+LA GRSTFMVEM+ETA+ILNQA ++ VILD Sbjct: 679 AQIGSFVPAKRARIGVVDRLFSRVGAADDLARGRSTFMVEMVETAAILNQAGERALVILD 738 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGTAT DGLSIAWA+IE+LH+ N+CR L ATH+HELT LS L R NAT++V + + Sbjct: 739 EIGRGTATFDGLSIAWASIEHLHDANKCRALFATHYHELTALSAKLPRLFNATVRVKEWH 798 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DMR 851 ++FLH+V+PG AD SYGIQV KLAGLP VI+RA +L E + D+ Sbjct: 799 GDVVFLHEVLPGAADRSYGIQVAKLAGLPPAVIARAKTVLAKLEAQDRSSGAQTLIDDLP 858 Query: 852 LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 L+ + ES+ S D +E + + DE++P AL LYA+K Sbjct: 859 LFAVTARASESEEVSSPKDTALIEALNAIEPDELTPREALDALYALKG 906 >gi|27376035|ref|NP_767564.1| DNA mismatch repair protein MutS [Bradyrhizobium japonicum USDA 110] gi|44888204|sp|Q89VX1|MUTS_BRAJA RecName: Full=DNA mismatch repair protein mutS gi|27349174|dbj|BAC46189.1| DNA mismatch repair protein [Bradyrhizobium japonicum USDA 110] Length = 912 Score = 864 bits (2233), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/886 (49%), Positives = 601/886 (67%), Gaps = 17/886 (1%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY+EIK+ + L+FYRMGDFYELFF+DA +AS+ LGI LTKRGKH G DIPMCG Sbjct: 27 TPMMEQYLEIKAAHQGLLLFYRMGDFYELFFEDAEIASKTLGIVLTKRGKHQGADIPMCG 86 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPV A Y+ +LI GHR+A+CEQ E P AK RGNKS+VRR VVRLVTPGTLTED LL Sbjct: 87 VPVERAEDYLHRLISAGHRVAVCEQTEDPAAAKARGNKSVVRRGVVRLVTPGTLTEDTLL 146 Query: 146 SPTDSNYLMAVARIRT-----EWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 +NYL+A+AR R+ + +AWIDIST F ++ + L + + RI+P E I + Sbjct: 147 DARANNYLLAIARARSSTGGDRFGLAWIDISTAEFMVTECSGGELAATLARINPNEAIVT 206 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 + + E L V +VF D + +E R+ DY+ + T+D +++E TAA Sbjct: 207 DALYNDNELGQTLRELPAVTPLTRDVF-DGATAEKRLCDYFAVATMDGLAQLTRLEATAA 265 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 +AA++Y+ +TQ+ P + P RE +T+ ID A R+NLE+ RTL+G R SLL ID Sbjct: 266 SAAVTYVDRTQVGRHPPLSPPAREASGATMAIDPATRANLELTRTLAGERRGSLLDAIDC 325 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 ++T AG RL A+R+A+PLTD+ I RLD++ F+ + I+ IL+ +PD+ R+L+R Sbjct: 326 TVTSAGSRLLAQRLAAPLTDAPAIARRLDAVGAFVADSAAREDIRSILRGAPDMSRALAR 385 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP-EELRGAVEKLKKLPQSLEKTLSSML 439 L +GRG P+D+A +RDGI + +L + D P +E+ + L + + L ++ L Sbjct: 386 LSVGRGGPRDLAGLRDGIIAADQVLARLGELDQPPQEIAAVMAALTRPSRELAAEFATAL 445 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + LP KRDGGF+R G + +LDE R+LRD S+ ++AS+Q +YA++T +K LKI+HNN L Sbjct: 446 DEQLPLIKRDGGFVRQGYEPALDEARNLRDASRLVVASMQARYADDTGVKGLKIRHNNVL 505 Query: 500 GYFIEVTSSSA-SVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GYF+EVT+ ++ L + FIHRQT++ RFTT EL ++E +I NA + AL +E Sbjct: 506 GYFVEVTAQHGDKLMSAPLNAT--FIHRQTLAGQIRFTTSELGEIEAKIANAGDRALGLE 563 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 LE FE L +E S+ L A+Q A++D++ +LA LA ++NY RP +D+S F ++ GR Sbjct: 564 LEIFERLCAKALEISDDLRAAAQGFALLDVATSLAKLAVDENYVRPEVDSSLGFAIEAGR 623 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ LK+ + +PFIAN CDLS + SG+LWLLTGPNM GKSTFLRQNALI ++AQ Sbjct: 624 HPVVEQALKR-NGEPFIANACDLSPAPAQKSGQLWLLTGPNMAGKSTFLRQNALIALLAQ 682 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA+ A IGI+D+LFSRVG+AD+LA GRSTFMVEM+ETA+ILNQA ++ VILDEI Sbjct: 683 IGSFVPATRARIGIIDRLFSRVGAADDLARGRSTFMVEMVETAAILNQAGERALVILDEI 742 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGTAT DGLSIAWA IE+LHE+NRCR L ATH+HELT LS L R NAT++V + Sbjct: 743 GRGTATFDGLSIAWAAIEHLHESNRCRTLFATHYHELTALSAKLPRMFNATVRVKEWQGN 802 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE-----KLYHHNQKDMRLY 853 ++FLH+V+PG AD SYGIQV KLAGLP VI+RA +L E + D+ L+ Sbjct: 803 VVFLHEVLPGSADRSYGIQVAKLAGLPPAVITRAKSVLAKLEAQDRGQTARALADDLPLF 862 Query: 854 YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 ++ +L ++ +K L+ DEMSP AL LYA+KA Sbjct: 863 A-VPSRAAAEAAPPSEAELLMDAVKALHPDEMSPREALDALYALKA 907 >gi|148258808|ref|YP_001243393.1| DNA mismatch repair protein MutS [Bradyrhizobium sp. BTAi1] gi|189030702|sp|A5ETJ3|MUTS_BRASB RecName: Full=DNA mismatch repair protein mutS gi|146410981|gb|ABQ39487.1| DNA mismatch repair protein MutS [Bradyrhizobium sp. BTAi1] Length = 910 Score = 862 bits (2226), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/887 (49%), Positives = 605/887 (68%), Gaps = 19/887 (2%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY++IK+ +P ++FYRMGDFYELFF+DA +AS+ LGI LTKRGKH G+DIPMCG Sbjct: 25 TPMMEQYLDIKAAHPGLMLFYRMGDFYELFFEDAEVASKALGIVLTKRGKHQGQDIPMCG 84 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPV + Y+ +LI G R+A+CEQ+E P A+ RGNKS+V+R VVR+VTPGTLTED LL Sbjct: 85 VPVERSEDYLHRLIAQGIRVAVCEQMEDPAAARARGNKSVVKRGVVRVVTPGTLTEDNLL 144 Query: 146 SPTDSNYLMAVARIRT-----EWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 +NYL+A+AR R +AWIDIST F ++ L + + RI+P E+I S Sbjct: 145 DARANNYLLAIARSRGSSGGDRLGLAWIDISTSDFIVTECAFAELTATLARINPNEVIIS 204 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 + S ++ + L V +VF D + +E R+ DY+ + T+D S++E TAA Sbjct: 205 DALYSDEVFEPVLRELAAVTPLTRDVF-DGATAERRLCDYFAVATMDGLAVLSRLETTAA 263 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 AA ++Y+++TQ+ +P + P RE ST+ ID A R+NLE+ RTL+G R SLL ID Sbjct: 264 AACVTYVERTQVGQRPPLAPPAREATGSTMAIDPATRANLELTRTLAGERRGSLLDAIDC 323 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 ++T AG RL A+R+A+PLT+ +I RLD++N F+ + I+ IL+ +PD+ R+++R Sbjct: 324 TVTSAGSRLLAQRLAAPLTEPAQIGRRLDAVNVFVADSAAREDIRAILRGAPDMTRAMAR 383 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILN-LFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 L +GRG P+D+A +RDGI + L L + P+E+ A+ L + ++L + LS L Sbjct: 384 LSVGRGGPRDLAALRDGILAADQALGRLSALDQPPQEIAAAMAALARPARALAEELSRAL 443 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + LP KRDGGF+R G D++LDETR+LRD S+ ++AS+Q +YA++T +K LKI+HNN L Sbjct: 444 DEQLPLIKRDGGFVRSGYDSTLDETRNLRDASRLVVASMQARYADQTGVKALKIRHNNVL 503 Query: 500 GYFIEVTSSSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GYF+EVT+ ++ L + FIHRQT++ RFTT EL ++E +I NA AL +E Sbjct: 504 GYFVEVTAQHGDKLMSAPLNAT--FIHRQTLAGQVRFTTSELGEIEAKIANAGERALNLE 561 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 LE F+ L + + L A+ A++D++ ALA LA + NY RP +D S F ++ GR Sbjct: 562 LEIFDRLCGQALAIGDDLRAAAHGFAMLDVATALAKLAVDDNYIRPEVDGSLGFAIEGGR 621 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ LK++ +PFIAN CDLS SG+LWLLTGPNM GKSTFLRQNALI ++AQ Sbjct: 622 HPVVEQALKREG-QPFIANSCDLSPTPGHKSGQLWLLTGPNMAGKSTFLRQNALIALLAQ 680 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA+ A IGIVD+LFSRVG+AD+LA GRSTFMVEM+ETA+ILNQA ++ VILDEI Sbjct: 681 IGSFVPATRARIGIVDRLFSRVGAADDLARGRSTFMVEMVETAAILNQAGERALVILDEI 740 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGTAT DGLSIAWA IE+LHE+NRCR L ATH+HELT L+ L R NAT++V + + Sbjct: 741 GRGTATFDGLSIAWAAIEHLHESNRCRTLFATHYHELTALAAKLPRLFNATVRVKEWHGD 800 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL-YHHNQK----DMRLY 853 ++FLH+V+PG AD SYGIQV KLAGLP VISRA +L E N + D+ L+ Sbjct: 801 VVFLHEVLPGSADRSYGIQVAKLAGLPPAVISRAKSVLAKLEAADRGQNARALVDDLPLF 860 Query: 854 -YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 P E +SK + + +K L+ DEM+P A+ LYA+KA Sbjct: 861 AVPSRAAPEPA--MSKEAEELIAAVKALHPDEMTPREAMDALYALKA 905 >gi|146337671|ref|YP_001202719.1| DNA mismatch repair protein MutS [Bradyrhizobium sp. ORS278] gi|189030703|sp|A4YKQ0|MUTS_BRASO RecName: Full=DNA mismatch repair protein mutS gi|146190477|emb|CAL74476.1| DNA mismatch repair protein MutS [Bradyrhizobium sp. ORS278] Length = 916 Score = 857 bits (2213), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/887 (49%), Positives = 602/887 (67%), Gaps = 19/887 (2%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY++IK+ +P ++FYRMGDFYELFF+DA +AS+ LGI LTKRGKH G+DIPMCG Sbjct: 31 TPMMEQYLDIKAAHPGLMLFYRMGDFYELFFEDAEVASKALGIVLTKRGKHQGQDIPMCG 90 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPV + Y+ +LI G R+A+CEQ+E P A+ RGNKS+V+R VVR+VTPGTLTED LL Sbjct: 91 VPVERSEDYLHRLIAQGIRVAVCEQMEDPAAARARGNKSVVKRGVVRVVTPGTLTEDNLL 150 Query: 146 SPTDSNYLMAVARIRT-----EWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 +NYL+++AR R +AWIDIST F ++ L + + RI+P E+I S Sbjct: 151 DARANNYLLSIARSRGSSGGDRLGLAWIDISTSDFIVTECAFAELTATLARINPNEVIVS 210 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 + S ++ + L V +VF D + +E R+ DY+ + T+D S++E TAA Sbjct: 211 DALYSDEAFEPVLRELAAVTPLTRDVF-DGATAERRLCDYFAVATMDGLAVLSRLEATAA 269 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 AA ++Y+++TQ+ +P + P RE ST+ ID A R+NLE+ RTL+G R SLL ID Sbjct: 270 AACVTYVERTQVGQRPPLAPPAREATGSTMAIDPATRANLELTRTLAGERRGSLLDAIDC 329 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 ++T AG RL A+R+A+PLT+ +I RLD++N F+ + I+ IL+ +PD+ R+++R Sbjct: 330 TVTSAGSRLLAQRLAAPLTEPAQIGRRLDAVNAFVADSAAREDIRVILRGAPDMTRAMAR 389 Query: 381 LKIGRGEPKDIAVIRDGIRSGINIL-NLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 L +GRG P+D+A +RDGI + L L + + P+E+ + L + ++L + L Sbjct: 390 LSVGRGGPRDLAALRDGILAADQALARLSVLDQPPQEIASVMAALARPARALADEFARAL 449 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + LP KRDGGF+R G DA+LDETR+LRD S+ ++AS+Q +YA++T +K LKI+HNN L Sbjct: 450 DEQLPLIKRDGGFVRSGYDATLDETRNLRDASRLVVASMQARYADQTGVKALKIRHNNVL 509 Query: 500 GYFIEVTSSSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GYF+EVT+ ++ L + FIHRQT++ RFTT EL ++E +I NA AL +E Sbjct: 510 GYFVEVTAQHGDKLMSAPLNAT--FIHRQTLAGQVRFTTSELGEIEAKIANAGERALNLE 567 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 LE F+ L + + L A+ A++D++ ALA LA + NY RP +D S F ++ GR Sbjct: 568 LEIFDRLCAQALAIGDDLRAAAHGFAMLDVATALAKLALDDNYVRPEVDGSLGFAIEGGR 627 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE++LK++ +PFIAN CDLS SG+LWLLTGPNM GKSTFLRQNALI ++AQ Sbjct: 628 HPVVEQSLKREG-QPFIANSCDLSPTPGHKSGQLWLLTGPNMAGKSTFLRQNALIALLAQ 686 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPAS A IGIVD+LFSRVG+AD+LA GRSTFMVEM+ETA+ILNQA ++ VILDEI Sbjct: 687 IGSFVPASRARIGIVDRLFSRVGAADDLARGRSTFMVEMVETAAILNQAGERALVILDEI 746 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGTAT DGLSIAWA IE+LHE+NRCR L ATH+HELT L+ L R NAT++V + Sbjct: 747 GRGTATFDGLSIAWAAIEHLHESNRCRTLFATHYHELTALAAKLPRLFNATVRVKEWQGD 806 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL-YHHNQK----DMRLY 853 ++FLH+V+PG AD SYGIQV KLAGLP VISRA +L E N + D+ L+ Sbjct: 807 VVFLHEVLPGSADRSYGIQVAKLAGLPPAVISRAKSVLAKLEAADRGQNARALVDDLPLF 866 Query: 854 -YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 P E +SK + + +K L+ DEM+P AL LY +KA Sbjct: 867 AVPSRAAVEPA--MSKETEELIAAVKDLHPDEMTPREALDALYRLKA 911 >gi|299132874|ref|ZP_07026069.1| DNA mismatch repair protein MutS [Afipia sp. 1NLS2] gi|298593011|gb|EFI53211.1| DNA mismatch repair protein MutS [Afipia sp. 1NLS2] Length = 909 Score = 853 bits (2203), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/894 (49%), Positives = 608/894 (68%), Gaps = 32/894 (3%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY+EIK+ NP L+FYRMGDFYELFF+DA ASR LGI LTKRGKH G+DIPMCG Sbjct: 24 TPMMEQYLEIKAANPGLLLFYRMGDFYELFFEDAETASRALGIMLTKRGKHQGEDIPMCG 83 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPV ++ Y+ +LI +GHR+A+CEQ+E P EAKKRG KS+VRR+VVRLVTPGTLTED LL Sbjct: 84 VPVERSDDYLHRLIALGHRVAVCEQMEDPAEAKKRGAKSVVRRDVVRLVTPGTLTEDNLL 143 Query: 146 SPTDSNYLMAVARIRT-----EWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 +NYLMA+AR+R +AWIDIST F I+ + L + + R+ P EI+ Sbjct: 144 DAKANNYLMAIARVRASSGDDRLGLAWIDISTSEFTITECSAGELSTTLARVSPNEIVVP 203 Query: 201 EKELSHAEYKSLF--ETLGNVAVAQPNV------FFDHSISESRIADYYNITTVDTFGSF 252 + ++F ETLG + V FD + +E R+ Y+ + T+D + Sbjct: 204 D---------AIFGDETLGPILREHTAVTPLTRDVFDSANAEQRLCAYFAVATMDGLATL 254 Query: 253 SQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 S++E TAAAAA++Y+++TQ+ P + P RE +TL ID A R+NLE+ RTL+G R Sbjct: 255 SRLEATAAAAAVTYVERTQVGKHPPLSPPARELAGTTLVIDPATRANLELTRTLAGERRG 314 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 SLL ID ++T AG RL A+R+A+PLTD I R D++ F+ +P + ++ IL+ +P Sbjct: 315 SLLDAIDLTVTAAGSRLLAQRLAAPLTDIAAITRRHDAVAAFVADPAAADDLRAILREAP 374 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSG-INILNLFLKNDLPEELRGAVEKLKKLPQSL 431 D+ R+L+RL +GRG P+D+A +RDGI + I L P+E+ A+E L+K ++L Sbjct: 375 DMSRALARLSVGRGGPRDLAGLRDGIVAADAAIARLQRMESPPQEIAAALESLRKPSRAL 434 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + LS L++ LP KRDGGF+R+ D +LDETRSLRD S+ ++AS+Q +YA++T +K L Sbjct: 435 AEELSRALAEQLPLSKRDGGFVRERYDTTLDETRSLRDASRLVVASMQARYADDTGVKAL 494 Query: 492 KIKHNNNLGYFIEVTSSSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 KI+HNN LGYF+EVT+ ++ L + FIHRQT++ RFTT EL ++E RI NA Sbjct: 495 KIRHNNVLGYFVEVTAQHGDKLMSAPLNAT--FIHRQTLAGQVRFTTSELGEIEARIANA 552 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 + AL +ELE FE L + + L A+ +++D++ +LA LA ++NY RP +D S Sbjct: 553 GDRALGLELEIFERLVAQTVAIGDDLRAAAHAFSVLDVATSLARLAMDENYVRPEVDGSL 612 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 F ++ GRHP+VE+ LK+ +PFIAN CDLS + SG++W+LTGPNM GKSTFLRQN Sbjct: 613 AFSIEGGRHPVVERALKRDG-QPFIANTCDLSPAPTQTSGQIWILTGPNMAGKSTFLRQN 671 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI ++AQ+GS+VPA A IG++D+LFSRVG+AD+LA GRSTFMVEM+ETA+ILNQA + Sbjct: 672 ALIALLAQIGSFVPAKRAKIGVIDRLFSRVGAADDLARGRSTFMVEMVETAAILNQAGER 731 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 + VILDEIGRGTAT DGLSIAWA+IE+LH+ N+CR L ATH+HELT LS L R NAT+ Sbjct: 732 ALVILDEIGRGTATFDGLSIAWASIEHLHDANKCRALFATHYHELTALSAKLPRLFNATV 791 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-- 848 +V + + ++FLH+V+PG AD SYGIQV KLAGLP VI+RA +L E N Sbjct: 792 RVKEWHGDVVFLHEVLPGAADRSYGIQVAKLAGLPPAVIARAKTVLAKLEAQDRGNGAQA 851 Query: 849 ---DMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 D+ L+ + +++ S +E + + DE++P AL LYA+KA Sbjct: 852 LIDDLPLFAVTSRASDNEQAPSPEASALIEALNAIQPDELTPREALDALYALKA 905 >gi|154243993|ref|YP_001414951.1| DNA mismatch repair protein MutS [Xanthobacter autotrophicus Py2] gi|154158078|gb|ABS65294.1| DNA mismatch repair protein MutS [Xanthobacter autotrophicus Py2] Length = 921 Score = 847 bits (2187), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/890 (47%), Positives = 596/890 (66%), Gaps = 17/890 (1%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY+EIK+ NPDSL+FYRMGDFYELFF DA AS+ LGI LTKRGKHLG+DIPMCG Sbjct: 36 TPMMAQYLEIKAANPDSLLFYRMGDFYELFFADAEAASQALGIVLTKRGKHLGEDIPMCG 95 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP+ A Y+ KLI +G R+++CEQ+E P EAKKRG KS+VRR+V RLVTPGT+TED LL Sbjct: 96 VPIDRAEEYLHKLIALGFRVSVCEQLEDPAEAKKRGPKSVVRRDVTRLVTPGTITEDALL 155 Query: 146 SPTDSNYLMAVARIRT-------EWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREII 198 N L A+AR+R +A+A+ D+STG F+++ + D L D+ R+DP EI+ Sbjct: 156 DARRENVLAALARVRAGSGPEDFAYALAYTDMSTGSFRVTATARDDLSGDLARLDPAEIL 215 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 S+ L E ++L V P FD + +E R+AD++ + +D FG+F++ E Sbjct: 216 VSDAVLDDGELRALLRAFPAV-TPLPRQSFDGAGAEKRLADFFGVAALDAFGTFARAELI 274 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AAAA ++Y+ +TQ+ KP + P +E + ID+ R+NLE++RT SG R SLL + Sbjct: 275 AAAAIVAYVDRTQLGAKPLLSRPVKEAEGGIMAIDAGTRANLELVRTTSGERRGSLLAAV 334 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D ++T AG RL A RIA PLTD I R D + ++ L ++ L +PD+ R++ Sbjct: 335 DRTVTAAGARLIARRIAEPLTDLAAIRARHDGVAHLVEEGELRRELRARLSRAPDMARAV 394 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 +RL + RG P+D+A +RD + + I LF P +L + L ++P +L L+S Sbjct: 395 TRLALQRGGPRDLAAVRDALDGALAIAGLFAAAP-PADLARSAAALARVPHALVLDLASA 453 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 L++ LP +RDGGF+R+G DA LD TR+LRD+S+R++A+L+ +Y +ET ++ LKI+HN Sbjct: 454 LAESLPPLRRDGGFIREGCDAELDATRALRDESRRVVAALERRYVDETGVRALKIRHNAV 513 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 LGYF+EV++ +A L+ + F+HRQTM+ RF+++EL DLE+RI +A AL +E Sbjct: 514 LGYFVEVSAQNADRLR-EAPHDAVFVHRQTMAGAVRFSSVELGDLESRIASAGERALGLE 572 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 F+ L+ A++ ++E++ A++ +A +D++ A LA +N+ RP ++ F + GR Sbjct: 573 QAIFDRLAAAVVAETETIRAAAEALAELDVAAGFAELAAVENHVRPHMEPGVAFAIAGGR 632 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ L ++ PF+ NDCDLS P G++ L+TGPNM GKSTFLRQNALI ++AQ Sbjct: 633 HPVVEQALAKEGG-PFVPNDCDLSPPEGFEDGRIVLVTGPNMAGKSTFLRQNALICVLAQ 691 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 G++VPA A IG+VD+LFSRVG+AD+LA GRSTFMVEM+ETA+ILNQAT +S VILDEI Sbjct: 692 AGAFVPARSARIGVVDRLFSRVGAADDLARGRSTFMVEMVETAAILNQATARSLVILDEI 751 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGTAT DG+SIAWA++E+LHE NRCR L ATHFHELT LS+ KR NAT++V++ + Sbjct: 752 GRGTATFDGMSIAWASLEHLHEVNRCRALFATHFHELTALSQRCKRLSNATVKVTEWHGD 811 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN--QK---DMRLY 853 +IFLH+V+PG AD SYGIQV KLAGLP VI+RA +L E + QK D+ L+ Sbjct: 812 VIFLHEVVPGAADRSYGIQVAKLAGLPEAVITRAKAVLAELEAAERASPAQKLIDDLPLF 871 Query: 854 YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTLE 903 + + + K + + ++ D +SP AL LY +K E Sbjct: 872 AVRPKPAAAASADPKAEATL-SALDGIDPDSLSPREALDALYRLKGLRRE 920 >gi|188583985|ref|YP_001927430.1| DNA mismatch repair protein MutS [Methylobacterium populi BJ001] gi|179347483|gb|ACB82895.1| DNA mismatch repair protein MutS [Methylobacterium populi BJ001] Length = 896 Score = 832 bits (2149), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/890 (47%), Positives = 587/890 (65%), Gaps = 18/890 (2%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 ++ +TPMM QYIEIK+ NPD L+FYRMGDFYELFF+DA +ASR LGI LTKRGKH G D Sbjct: 7 DIPGATPMMAQYIEIKAANPDCLLFYRMGDFYELFFEDAEIASRALGIVLTKRGKHGGAD 66 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCGVP+ A+ Y+ +LI +GHR+A+C+Q E EAKKRG KS+VRR V+RLVTPGTLT Sbjct: 67 IPMCGVPLERADDYLHRLIALGHRVAVCQQTEDAAEAKKRGPKSVVRREVIRLVTPGTLT 126 Query: 141 EDQLLSPTDSNYLMAVAR-----IRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPR 195 ED+LL PT +N L+A+ R R + +A +DISTG F +S L + I R +PR Sbjct: 127 EDRLLDPTRANLLLAIGRRKVSDTRDAYGLAALDISTGRFSLSEVEGAELAAAIARHEPR 186 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQV 255 EI+ SE + L+ V + + +E RI + + + T+D FG FS+ Sbjct: 187 EIVLSEVIHADPGLAKLWRETKAAVVPLAQGELEPASAERRIREQFGVKTLDGFGHFSRA 246 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 E AA AA+ Y+++TQ+ + + P RE +TL ID+A R+NLE+ RTLSG R+ SLL Sbjct: 247 EIAAAGAALLYLERTQLGTRVPLAAPSREATGATLAIDAATRANLELTRTLSGERKGSLL 306 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 ID +++ G RL AE +A PLTD TKI R D++ F Q+ L ++ L ++PD+ Sbjct: 307 DAIDRTVSAGGARLLAEHLAGPLTDLTKIGRRHDAVAFLAQDGALRAQLRDALHAAPDIA 366 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R+LSR+ + R P+D+A +RDG+ + I + DLP+ L +L K ++L + L Sbjct: 367 RALSRIGLNRAGPRDLAALRDGLTAAATISERLSREDLPDGLARLARRLDKADRALTEEL 426 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 ++ LSDDLP +RDGGF+R G A +DE R L S+++IA+LQ +YAE T + L+IKH Sbjct: 427 AAALSDDLPLNRRDGGFVRAGYHAEIDEARLLGQDSRKVIAALQARYAEATGCRTLRIKH 486 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 NN LGY+IEV + K L F+HRQTM + RFT++EL +LE++I A++ L Sbjct: 487 NNVLGYYIEVPQAVGEACLKGLMQD--FVHRQTMVDAMRFTSVELGELESKIAGASDRVL 544 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E F+ LS + E +E++ + ++ ++ +D++ + A LA E + RPIID S F +K Sbjct: 545 ALESAVFDALSARVSEGAEAIADIAEALSGLDVAASHAELAVELAWTRPIIDESLAFEIK 604 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE L + + + FIAN CDLS +G++ L+TGPNMGGKSTFLRQNALI + Sbjct: 605 GGRHPVVEAALTK-AGEAFIANACDLS---GDEAGRIRLVTGPNMGGKSTFLRQNALIAV 660 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +AQMG++VPA+ A +G+VD+LFSRVG+AD+LA G STFMVEM+ETA+ILNQAT +S V+L Sbjct: 661 LAQMGAFVPAASARLGVVDRLFSRVGAADDLARGHSTFMVEMVETAAILNQATRRSLVVL 720 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGTAT DGLSIAWA +E+LHE N CR L ATHFHELT LS+ L R NATL+V++ Sbjct: 721 DEIGRGTATFDGLSIAWACLEHLHEKNGCRALFATHFHELTALSQRLPRLDNATLKVAED 780 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF-----EKLYHHNQKDM 850 ++FLH+V+PG+A+ SYG+QV +LAGLP +V++RA ILK E+ D+ Sbjct: 781 RGDVVFLHEVVPGVAERSYGLQVARLAGLPPSVVARAGAILKGLESSERERPARRKIDDL 840 Query: 851 RLY--YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 L+ + + D I L+ D ++P AL LY +K Sbjct: 841 PLFASLAAAPPPPPEPVKPEPDDRLGRLIDALDPDALTPREALDALYRLK 890 >gi|154254030|ref|YP_001414854.1| DNA mismatch repair protein MutS [Parvibaculum lavamentivorans DS-1] gi|189083166|sp|A7HZ64|MUTS_PARL1 RecName: Full=DNA mismatch repair protein mutS gi|154157980|gb|ABS65197.1| DNA mismatch repair protein MutS [Parvibaculum lavamentivorans DS-1] Length = 908 Score = 825 bits (2130), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/889 (48%), Positives = 585/889 (65%), Gaps = 24/889 (2%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM QY+EIK+ P++L+FYRMGDFYELFF+DA+ AS L I LTKRGKHLG+DIPMC Sbjct: 23 ATPMMAQYLEIKARWPEALLFYRMGDFYELFFEDAVAASAALDIALTKRGKHLGEDIPMC 82 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVPVH+ + Y+Q+LI+ G ++A+CEQ+E P EAKKRG KS+V R V RLVTPGTLTED L Sbjct: 83 GVPVHSHDAYLQRLIRKGFKVAVCEQVEDPAEAKKRGAKSVVARAVARLVTPGTLTEDTL 142 Query: 145 LSPTDSNYLMAVARIRTE--WAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK 202 L NYL A++R E + +AW+D+STG F +++ L +++ R+ P E++ E Sbjct: 143 LDARAHNYLAALSRTGAEAGFGLAWVDVSTGDFAVTSLAPVALGAELARLSPGELLLPET 202 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 + +L G P + F+ +E R+ + ++ +D FG+F++ E A A Sbjct: 203 LDEDEDLAALLAQSGAALTRLPAIRFESGQAERRLKSHLGVSALDGFGAFARAELGAMGA 262 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 + Y++ TQ+ P + P R T+ ID+A R+NLE++RTL G SLL T+D ++ Sbjct: 263 LLDYVELTQVGRMPALMPPRRVAATDTMAIDAATRANLELVRTLQGETAGSLLATMDRTV 322 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 TGAG R A R+A+PLTD +N RLD++ +F + ++ LKS+PD+ R+LSRL Sbjct: 323 TGAGARELASRLAAPLTDPAAVNRRLDAVEWFHDARDMRARLRAGLKSAPDIARALSRLS 382 Query: 383 IGRGEPKDIAVIR------DGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 +GRG P+D+A I G+ + ++ + L LPEE+ E ++ SL+ L+ Sbjct: 383 LGRGGPRDLAAIANGLAAAHGLCAALDGASPSLLP-LPEEIARECEAMRGTAASLQSRLA 441 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 +ML+++LP RDGGF+ GA LDETR+LRD ++++IA LQ KYA E+ I LKI+HN Sbjct: 442 AMLAEELPLLARDGGFIARGASPELDETRALRDDARKLIAGLQAKYAGESGIAALKIRHN 501 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 N LGY+IEV L S D +IHRQTM+N RFTT EL L +RI A AL Sbjct: 502 NVLGYYIEVPPRHGEKLLAPPFS-DSYIHRQTMANAMRFTTAELAGLASRIAEAAGRALE 560 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 IEL F+ L+ A + ++ SL A++ +A +D + ALA LA E+ Y RP +D S F ++ Sbjct: 561 IELALFDELAAATLLEAPSLSRAAEALARLDATAALAELAAERRYVRPRLDASFAFDIRG 620 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGK-LWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE L + + + F+ ND LS + GK +WLLTGPNM GKSTFLRQNALI I Sbjct: 621 GRHPVVEAALAR-TGQAFVPNDTSLSA--ESGGGKHIWLLTGPNMAGKSTFLRQNALIAI 677 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQMGS+VPA AHIG+VD+LFSRVG+AD+LA GRSTFMVEM+ETA+ILNQA +S VIL Sbjct: 678 MAQMGSFVPADEAHIGVVDRLFSRVGAADDLARGRSTFMVEMVETAAILNQAGERSLVIL 737 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGTAT DGLSIAWAT+E+LH N+ R L ATH+HELT LS+ L NAT++V + Sbjct: 738 DEIGRGTATFDGLSIAWATVEHLHGVNKSRALFATHYHELTALSEKLAHLANATMRVKEW 797 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DM 850 ++FLH+V PG AD SYGIQV KLAGLP VI+RA +L E+ +H + D+ Sbjct: 798 QGDVVFLHEVAPGAADRSYGIQVAKLAGLPAPVIARAQSVLAALEEGGNHEARTKLIDDL 857 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 L+ + +K + E++K LN DE+SP AL+ LY +KA Sbjct: 858 PLF-----SATAKPAPAVKVSAAEEELKNLNPDELSPKQALELLYKLKA 901 >gi|323135795|ref|ZP_08070878.1| DNA mismatch repair protein MutS [Methylocystis sp. ATCC 49242] gi|322398886|gb|EFY01405.1| DNA mismatch repair protein MutS [Methylocystis sp. ATCC 49242] Length = 890 Score = 823 bits (2127), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/904 (47%), Positives = 604/904 (66%), Gaps = 32/904 (3%) Query: 6 SSPQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRC 65 ++PQ + ++ ++ +TPM+ QYIEIK+ N D L+FYRMGDFYELFFDDA A+R Sbjct: 5 AAPQPIVAD----DKAQARATPMIAQYIEIKAANADCLLFYRMGDFYELFFDDAQTAARA 60 Query: 66 LGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSL 125 LGI LTKRGKHLG+DIPMCGVPV AN Y+QKLI +G R+A+CEQIE P EAKKRG KS+ Sbjct: 61 LGIMLTKRGKHLGEDIPMCGVPVERANDYLQKLIALGFRVAVCEQIEDPAEAKKRGAKSV 120 Query: 126 VRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRT-----EWAIAWIDISTGIFKISTS 180 VRR+VVRLVTPGT+TED LL P +N AV+RIR + +A +DISTG F +S Sbjct: 121 VRRDVVRLVTPGTITEDALLDPARANAFAAVSRIRGADGGWRYGLASVDISTGAFTVSDC 180 Query: 181 NHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADY 240 L S + R++P EI+ +E ++F +G A P + + + R+ D+ Sbjct: 181 AESELASTLARLEPCEIVAAEALCRDDHVVAVFAGVG--APVAP-LGREAGDAPRRLQDF 237 Query: 241 YNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNL 300 Y + T+ FG+ S+ E +AAA AI Y+++TQ ++P + P +TL ID+A R+NL Sbjct: 238 YGVATLAGFGALSEAEISAAATAILYVERTQKGSRPALARPMSLRESATLDIDAATRANL 297 Query: 301 EILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL 360 E+ RTLSG+RE SLL +D ++T AG RL AER+A+P TD I R D++ FF++NP + Sbjct: 298 ELSRTLSGAREGSLLSVVDLTVTSAGARLMAERLAAPSTDPALIGARHDAVAFFLENPDI 357 Query: 361 INPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGA 420 + ++ L +PD+ R++SRL + RG P+D+A + + + ++ LF + P E+ Sbjct: 358 RSALRAKLARAPDLARAVSRLSLQRGGPRDLASVGAALTAARDVAELFARAGAPGEIARD 417 Query: 421 VEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 V L +L ++ L D +P +R G F+R+G DA LDE RSLRD+S+ +IASLQ Sbjct: 418 VAMLATADAALAHEIARSLGDSVPLDRRGGDFIREGRDAELDEARSLRDESRHVIASLQS 477 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLE 539 +YA++T K LKIKHNN LGYF+E+ ++ +L+ + F HRQTM++ RF+T E Sbjct: 478 RYADQTGTK-LKIKHNNFLGYFLELPAAQGEKLLRPPFDQT--FTHRQTMADAMRFSTRE 534 Query: 540 LIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQ 599 L++L++RI +A + AL EL F+ L+ I+ +++ L N +Q A +D+ ALA +A+++ Sbjct: 535 LVELQSRIASAADRALARELALFDALAAQILSRTDELQNLAQGFARLDVLSALAEVAEKR 594 Query: 600 NYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPN 659 + RP++D+S +F + GRHP+VE +L+ Q K F ANDCDLS DK +G++ ++TGPN Sbjct: 595 GWTRPLVDHSLDFAIIGGRHPVVEASLEAQG-KAFAANDCDLS--GDK-AGRIAVVTGPN 650 Query: 660 MGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIE 719 M GKSTFLRQNA+I ++AQ GS+VPA A IG+VD+LFSRVG++D+LA GRSTFMVEM+E Sbjct: 651 MAGKSTFLRQNAVIALLAQAGSFVPAREARIGVVDRLFSRVGASDDLARGRSTFMVEMVE 710 Query: 720 TASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLS 779 TA+ILN AT +S VILDEIGRGTAT DGLSIAWATIE+LHE NR R + ATHFHELT LS Sbjct: 711 TAAILNCATPRSLVILDEIGRGTATFDGLSIAWATIEHLHEVNRSRAIFATHFHELTQLS 770 Query: 780 KSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF 839 K + R N T++V+D ++FLH+V+ G AD SYG+ V +LAGLP +V+SRA+ IL Sbjct: 771 KRMARLVNLTMKVTDHAGEVVFLHEVVKGAADRSYGVHVAQLAGLPASVVSRAHAILADL 830 Query: 840 EKLYHHNQ-----KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 E D+ L+ + + K+ L E + ++ D+MSP AL L Sbjct: 831 EAADRRAPVEALIDDLPLFKRVAEISQPKDALR-------EALAKIDPDQMSPRDALAAL 883 Query: 895 YAVK 898 Y +K Sbjct: 884 YELK 887 >gi|260431975|ref|ZP_05785946.1| DNA mismatch repair protein MutS [Silicibacter lacuscaerulensis ITI-1157] gi|260415803|gb|EEX09062.1| DNA mismatch repair protein MutS [Silicibacter lacuscaerulensis ITI-1157] Length = 876 Score = 823 bits (2126), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/882 (47%), Positives = 580/882 (65%), Gaps = 16/882 (1%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPMM QY+EIK + D+L+FYRMGDFYE+FF+DA+ A+ L I LTKRGKH G+DI Sbjct: 1 MSNVTPMMAQYLEIKEAHKDALLFYRMGDFYEMFFEDAVNAAEALDIALTKRGKHNGEDI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVPVH+A Y+ LI+ G R+A+CEQ+ESP EAKKRG+KS+V+R+VVRLVTPGTLTE Sbjct: 61 PMCGVPVHSAEGYLLTLIRKGFRVAVCEQMESPAEAKKRGSKSVVKRDVVRLVTPGTLTE 120 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 D LL N+L A A +R E A+AW DISTG F + RL ++ R+ P E+I ++ Sbjct: 121 DALLEARRHNFLAAYAEVRDEAALAWADISTGAFHVMPLTSVRLSPELARLAPSELIVAD 180 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVF---FDHSISESRIADYYNITTVDTFGSFSQVEKT 258 L +T+G++ +A + FD + +E RI +++ T+D FG+F + E + Sbjct: 181 -----GAEADLRDTVGDLGIALTPIGRASFDSTAAEKRICGLFHVGTLDAFGNFGRAEIS 235 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 A A I Y++ TQ P + P +E + ID+A R NLE+ R+LSG R SLL + Sbjct: 236 AMGALIDYLEITQKGKLPLLQTPMKESEDRVVQIDAATRRNLELTRSLSGGRAGSLLSVV 295 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D ++T G RL +R++SP + I+ RLD+++F Q+ ++ +++ L+ +PD+ R+L Sbjct: 296 DRTVTPGGARLLEQRLSSPSRNLDVIHARLDAVDFAAQDSLIAADLREALRKTPDLDRAL 355 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 SRL + RG P+D+A IR+G+ I + +LP L AV+ L L+ ++ Sbjct: 356 SRLSLERGGPRDLAAIRNGLAQAQAIAEICAGQNLPVLLATAVQNLVGFDDLLDLLDQAL 415 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 ++D P RDGGF+ G DA LDE R+LRD+ + +IA Q KYAE T I +LKIKHNN Sbjct: 416 VADP-PLLARDGGFIAPGFDAELDEARTLRDEGRSVIAGFQQKYAEHTGIASLKIKHNNV 474 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 LGYFIE T++ A + S + +IHRQT +N RFTT+EL ++E RI NA N AL IE Sbjct: 475 LGYFIETTATHAEKMLNPPFS-ETYIHRQTTANQVRFTTVELSEIETRILNAGNLALEIE 533 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 ++ LS+ I+ Q+ ++ A++ +A +D++ ALA LA+ +N+CRP +D S F + GR Sbjct: 534 KRLYQRLSDEILAQAARINQAARGLAELDLTTALADLARGENWCRPQVDGSRAFDIVAGR 593 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE L+QQS FIANDCDLS ++ +WLLTGPNM GK TFLRQNALI ++AQ Sbjct: 594 HPVVEHALRQQSGDAFIANDCDLSA---EDGAAIWLLTGPNMAGKPTFLRQNALIALLAQ 650 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 MGS+VPA AHIG+V +LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA +++ VILDEI Sbjct: 651 MGSFVPAERAHIGLVSQLFSRVGASDDLARGRSTFMVEMVETAAILNQADDRALVILDEI 710 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGTAT DGLSIAWAT+E+LH NRCR L ATH+HELT L+ L+ NAT+ V + Sbjct: 711 GRGTATYDGLSIAWATLEHLHAANRCRALFATHYHELTALAGKLEGVENATVAVKEWEGE 770 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY--YPE 856 +IFLH+V G AD SYG+QV +LAGLP +V+ RA +L EK K L P Sbjct: 771 VIFLHEVHKGAADRSYGVQVAQLAGLPASVVERARVVLDQLEKTEREGGKQKALIDDLPL 830 Query: 857 IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 K + E +K + D+++P AL +Y +K Sbjct: 831 FSAAPPPPPAPKTSAV-DEMLKDILPDDLTPREALDLIYKLK 871 >gi|84684657|ref|ZP_01012558.1| DNA mismatch repair protein [Maritimibacter alkaliphilus HTCC2654] gi|84667636|gb|EAQ14105.1| DNA mismatch repair protein [Rhodobacterales bacterium HTCC2654] Length = 874 Score = 822 bits (2123), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/881 (48%), Positives = 575/881 (65%), Gaps = 20/881 (2%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM Q++EIKS PD+L+FYRMGDFYELFFDDA+ A+ L I LTKRGKHLG DIPMCGVP Sbjct: 1 MMAQFLEIKSGYPDALLFYRMGDFYELFFDDAVAAAEALDIALTKRGKHLGDDIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 VH A Y+ LI+ G R+A+CEQ+E P EAKKRG+KS+V+R+VVRLVTPGTLTED LL Sbjct: 61 VHAAEGYLLTLIRKGFRVAVCEQMEDPAEAKKRGSKSVVKRDVVRLVTPGTLTEDSLLDA 120 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHA 207 N+L A A +R E A+AW+DISTG F+I RL ++ RI PRE++ SE S A Sbjct: 121 RRHNFLAAFAEVRDEGALAWVDISTGAFRIMQCPRSRLGPELARIAPREVVVSES--SEA 178 Query: 208 EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYI 267 E L LG FD + +E R+ D ++++T+D FG+FS+ + A A + Y+ Sbjct: 179 ELTELVTDLGAAITPLGRAAFDSTGAEKRLCDLFSVSTLDAFGTFSRADLGALGAIVEYL 238 Query: 268 KKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGG 327 TQ P + P E Q+ + ID+A R NLE+ L+G R+ SLL TID ++T GG Sbjct: 239 DITQKGKLPLLRPPVVEISQAAMQIDAATRRNLELTHALAGGRDGSLLSTIDKTVTAGGG 298 Query: 328 RLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGE 387 RL R++SP I +RL+++ F + + ++ L+ PD+ R++SRL + RG Sbjct: 299 RLLERRLSSPSRTLDTIESRLEAVAFLVDESLFRADLRDALRKVPDIDRAVSRLALDRGG 358 Query: 388 PKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFK 447 P+D+ IRDG+ + I + P +R A + +L L L D P Sbjct: 359 PRDLTGIRDGLGAAAEIAAQLSSVEPPRLMREA-DMFLTGHDALVGLLDRALVADPPLLV 417 Query: 448 RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTS 507 RDGGF+ G DA LDE R+LRD+ + +IA +Q KYAE + +LKIKHNN LGYFIE T+ Sbjct: 418 RDGGFIAAGYDAELDEARTLRDEGRGVIAGMQAKYAEMAGVSSLKIKHNNVLGYFIETTA 477 Query: 508 SSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILS 566 + A +L L + FIHRQT +N RFTT++L +LE +I NA N AL IE ++ L Sbjct: 478 THAEKMLSAPL--SETFIHRQTTANAVRFTTVDLSELETKILNAGNRALEIEKRLYDSLK 535 Query: 567 NAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTL 626 ++ + +L +A++ +A +D+S ALA LA +++CRP+++NS F V GRHP+VE+ L Sbjct: 536 AEVLSNAAALGDAARSLAELDVSAALAELAASEDWCRPVVENSRAFEVLGGRHPVVERAL 595 Query: 627 KQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPAS 686 + Q PFIANDC L+ + + +WLLTGPNM GKSTFLRQNALI ++AQ GS+VPA+ Sbjct: 596 RAQGGDPFIANDCHLA--DGSDGADIWLLTGPNMAGKSTFLRQNALIALLAQAGSFVPAT 653 Query: 687 YAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLD 746 A +GIV +LFSRVG+AD+LA GRSTFMVEM+ETA+ILNQA + + VILDEIGRGTAT D Sbjct: 654 SARVGIVSQLFSRVGAADDLARGRSTFMVEMVETAAILNQADDHALVILDEIGRGTATYD 713 Query: 747 GLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVI 806 GLSIAWAT+E+LHETNRCR L ATH+HELT L+ L NAT+ V + + +IFLH+VI Sbjct: 714 GLSIAWATLEHLHETNRCRALFATHYHELTQLAGKLDGVDNATIAVKEWDGEVIFLHEVI 773 Query: 807 PGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN---QK----DMRLYYP-EIQ 858 G AD SYG+QV KLAGLP++VI RA +L EK QK D+ L+ +Q Sbjct: 774 KGAADRSYGVQVAKLAGLPSSVIDRARIVLDALEKGEREGGAAQKALIDDLPLFSAVPVQ 833 Query: 859 TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 K S + EK+ ++ DE++P AL +Y +K+ Sbjct: 834 AAPVKTAPS----VLKEKLAGIHPDELTPREALDLIYELKS 870 >gi|163853679|ref|YP_001641722.1| DNA mismatch repair protein MutS [Methylobacterium extorquens PA1] gi|163665284|gb|ABY32651.1| DNA mismatch repair protein MutS [Methylobacterium extorquens PA1] Length = 916 Score = 819 bits (2115), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/891 (46%), Positives = 590/891 (66%), Gaps = 19/891 (2%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 ++ +TPMM QYIEIK+ NPD L+FYRMGDFYELFF+DA +ASR LGI LTKRGKH G D Sbjct: 26 DIPGATPMMAQYIEIKAANPDCLLFYRMGDFYELFFEDAEIASRALGIVLTKRGKHGGAD 85 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCGVP+ A+ Y+ +LI +GHR+A+C+Q E EAKKRG KS+VRR V+RLVTPGTLT Sbjct: 86 IPMCGVPLERADDYLHRLIALGHRVAVCQQTEDAAEAKKRGPKSVVRREVIRLVTPGTLT 145 Query: 141 EDQLLSPTDSNYLMAVARIRTE-----WAIAWIDISTGIFKISTSNHDRLISDIMRIDPR 195 ED+LL PT +N L+A+ R + + +A +DISTG F +S L + I R +PR Sbjct: 146 EDRLLDPTRANLLLAIGRRKVSDTSEAYGLAALDISTGRFSLSEVESSELAAAIARHEPR 205 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQV 255 EI+ SE + L+ V + + +E RI + + + T+D FG+FS+ Sbjct: 206 EIVLSEVIHADPALAKLWRETKAAVVPLAQGELEPASAERRIREQFGVKTLDGFGNFSRA 265 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 E AA AA+ Y+++TQ+ + + P RE +TL ID+A R+NLE+ RTLSG R+ SLL Sbjct: 266 EIAAAGAALLYLERTQLGTRVPLSAPSREATGATLAIDAATRANLELTRTLSGERKGSLL 325 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 ID +++ G RL AE +A PLTD TKI R D++ F ++ L ++ L ++PD+ Sbjct: 326 DAIDRTVSAGGARLLAEHLAGPLTDLTKIGRRHDAVAFLAEDGALRAHLRDALHAAPDIA 385 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINIL-NLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R+LSR+ + R P+D+A +RDG+ + I L + LP+ L +L+K ++L + Sbjct: 386 RALSRIGLNRAGPRDLAALRDGLDAAATIAEQLRAEEKLPDGLSRLARRLEKADRALAEE 445 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L+ L+DDLP +RDG F+R G A +DE R L S+++IA+LQ +YAE + + L+IK Sbjct: 446 LARALADDLPLNRRDGNFVRAGYHAEIDEARLLGQDSRKVIAALQARYAEASGCRTLRIK 505 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 HNN LGY+IEV + K L F+HRQTM + RFT++EL +LE++I A++ Sbjct: 506 HNNVLGYYIEVPQAVGEACLKGLMQD--FVHRQTMVDAMRFTSVELGELESKIAGASDRV 563 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L +E F+ LS + E +E++ + ++ ++ +D++ + A LA E + RP+ID+S F + Sbjct: 564 LALESAVFDALSARVSEGAEAIADIAEALSGLDVAASHAELAVELAWTRPVIDDSLAFAI 623 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 + GRHP+VE L + + + FIAN CDLS +G++ L+TGPNMGGKSTFLRQNALI Sbjct: 624 EGGRHPVVEAALTK-AGEAFIANACDLS---GDEAGRIRLVTGPNMGGKSTFLRQNALIA 679 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++AQMG++VPA+ A +G+VD+LFSRVG+AD+LA G STFMVEM+ETA+ILNQAT +S V+ Sbjct: 680 VLAQMGAFVPAAAARLGVVDRLFSRVGAADDLARGHSTFMVEMVETAAILNQATRRSLVV 739 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDEIGRGTAT DGLSIAWA +E+LHE N CR L ATHFHELT LS+ L R NATL+V++ Sbjct: 740 LDEIGRGTATFDGLSIAWACLEHLHEKNGCRALFATHFHELTALSQRLPRLDNATLKVAE 799 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF-----EKLYHHNQKD 849 ++FLH+V+PG+A+ SYG+QV +LAGLP +V++RA ILK E+ +D Sbjct: 800 DRGDVVFLHEVVPGVAERSYGLQVARLAGLPPSVVARAGAILKGLESSERERPARRKIED 859 Query: 850 MRLYYP--EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L+ + + D + I L+ D ++P AL LY +K Sbjct: 860 LPLFASLAAAPPPPPEPVKPEPDDRLGQLIDRLDPDALTPREALDALYRLK 910 >gi|163745101|ref|ZP_02152461.1| DNA mismatch repair protein [Oceanibulbus indolifex HEL-45] gi|161381919|gb|EDQ06328.1| DNA mismatch repair protein [Oceanibulbus indolifex HEL-45] Length = 873 Score = 818 bits (2114), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/881 (48%), Positives = 579/881 (65%), Gaps = 23/881 (2%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY+E+K+ + D+L+FYRMGDFYE+FFDDA+ A+ L I LTKRGKH GKDI MCGVP Sbjct: 1 MMAQYLELKADHADALLFYRMGDFYEMFFDDAVAAAEALDIALTKRGKHQGKDIAMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 VH A Y+ LI+ G R+A+CEQ+ESP EAKKRG+KS+V+R+VVRLVTPGTLTE+ LL Sbjct: 61 VHAAEGYLLTLIRKGFRVAVCEQMESPAEAKKRGHKSVVKRDVVRLVTPGTLTEESLLEA 120 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHA 207 NYL A A +R A+AW+DISTG F + RL ++ R+ P E+I SE + S Sbjct: 121 RRHNYLAAFAEVRDACAMAWVDISTGAFHVMPLAQVRLGPELARLAPSELIVSEAKES-- 178 Query: 208 EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYI 267 E + + G FD + +E RI D ++I T++ FG+F++ E +A A I Y+ Sbjct: 179 ELQEVVSDFGIALTGLARSAFDSTSAEKRICDLFDIATLEAFGTFTRAEVSAMGAVIEYL 238 Query: 268 KKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGG 327 TQ N P + P++E T+ ID+A R NLE+ +L+G R SLL +D + T G Sbjct: 239 TITQRGNLPLLRPPQKEAEARTVQIDAATRRNLELTHSLNGGRTGSLLSIMDNTATAGGA 298 Query: 328 RLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGE 387 RL RI+SP +N R D+I+F P + I++ L++ PD+ R+LSRL + RG Sbjct: 299 RLLERRISSPSRVIEVVNARADAISFAFDTPRVAQDIRERLRNVPDLDRALSRLSLDRGG 358 Query: 388 PKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFK 447 P+D+A IR+G+ + +++LP+ LR A E L+ L L L + P Sbjct: 359 PRDLAAIRNGLIEAEALHQSLTQHELPDLLRSAAEGLQG-HGDLIDLLDQALVAEPPLMV 417 Query: 448 RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTS 507 RDGGF+ G D LD R LRD+ + +IA +Q ++ +T I +LKIKHNN LGYFIE T+ Sbjct: 418 RDGGFIAPGYDEDLDSARELRDEGRGVIAGMQQQFVSDTGISSLKIKHNNVLGYFIECTA 477 Query: 508 SSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILS 566 + A +L L + FIHRQT +N RFTT+EL +LE +I NA N A IE +E L Sbjct: 478 THAEKMLSAPL--SETFIHRQTTANQVRFTTVELSELETKILNAGNHAQEIEKRLYERLR 535 Query: 567 NAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTL 626 +AI++Q+ + AS +A ID++ ALA LA+ +N+ RP +D S F ++ GRHP+VE+ L Sbjct: 536 SAILDQAAEIGQASSGLAEIDLASALADLARSENWTRPRVDMSRAFEIEGGRHPVVERAL 595 Query: 627 KQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPAS 686 Q+S +PFIANDC+L ND + +WLLTGPNM GKSTFLRQNALI +MAQMGS+VPA+ Sbjct: 596 AQKSGEPFIANDCNLGAEND--AANIWLLTGPNMAGKSTFLRQNALIALMAQMGSFVPAT 653 Query: 687 YAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLD 746 AHIGIV +LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA +++ VILDEIGRGTAT D Sbjct: 654 SAHIGIVSQLFSRVGASDDLARGRSTFMVEMVETAAILNQADDRALVILDEIGRGTATYD 713 Query: 747 GLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVI 806 GLSIAWAT+E+LH+ NR R L ATH+HE+T L+ L NAT+ V + ++FLH+V Sbjct: 714 GLSIAWATLEHLHDVNRARALFATHYHEMTALAGKLPGVDNATVAVKEWEGEVVFLHEVR 773 Query: 807 PGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN---QK----DMRLYY--PEI 857 G AD SYG+QV +LAGLP VI+RA +L+ EK QK D+ L+ P Sbjct: 774 KGAADRSYGVQVAQLAGLPAPVIARARVVLEALEKGEREGGTTQKTLIDDLPLFAVSPAP 833 Query: 858 QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 Q K +K++ + EK+K + DE+SP AL+ +Y +K Sbjct: 834 QPKAAKSSAVE------EKLKEIIPDELSPREALELIYKLK 868 >gi|240141103|ref|YP_002965583.1| DNA mismatch repair protein mutS [Methylobacterium extorquens AM1] gi|240011080|gb|ACS42306.1| DNA mismatch repair protein mutS [Methylobacterium extorquens AM1] Length = 928 Score = 818 bits (2112), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/891 (46%), Positives = 590/891 (66%), Gaps = 19/891 (2%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 ++ +TPMM QYIEIK+ NPD L+FYRMGDFYELFF+DA +ASR LGI LTKRGKH G D Sbjct: 38 DIPGATPMMAQYIEIKAANPDCLLFYRMGDFYELFFEDAEIASRALGIVLTKRGKHGGAD 97 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCGVP+ A+ Y+ +LI +GHR+A+C+Q E EAKKRG KS+VRR V+RLVTPGTLT Sbjct: 98 IPMCGVPLERADDYLHRLIALGHRVAVCQQTEDAAEAKKRGPKSVVRREVIRLVTPGTLT 157 Query: 141 EDQLLSPTDSNYLMAVARIRTE-----WAIAWIDISTGIFKISTSNHDRLISDIMRIDPR 195 ED+LL PT +N L+A+ R + + +A +DISTG F +S L + I R +PR Sbjct: 158 EDRLLDPTRANLLLAIGRRKVSDTSEAYGLAALDISTGRFSLSEVESSELAAAIARHEPR 217 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQV 255 EI+ SE + L+ V + + +E RI + + + T+D FG+FS+ Sbjct: 218 EIVLSEVIHADPALAKLWRETKAAVVPLAQGELEPASAERRIREQFGVKTLDGFGNFSRA 277 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 E AA AA+ Y+++TQ+ + + P RE +TL ID+A R+NLE+ RTLSG R+ SLL Sbjct: 278 EIAAAGAALLYLERTQLGTRVPLSAPSREATGATLAIDAATRANLELTRTLSGERKGSLL 337 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 ID +++ G RL AE +A PLTD TKI R D++ F ++ L ++ L ++PD+ Sbjct: 338 DAIDRTVSAGGARLLAEHLAGPLTDLTKIGRRHDAVAFLAEDGALRAHLRDALHAAPDIA 397 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINIL-NLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R+LSR+ + R P+D+A +RDG+ + I L + +LP+ L +L+K ++L + Sbjct: 398 RALSRIGLNRAGPRDLAALRDGLDAAATIAEQLRAEENLPDGLTRLARRLEKADRALAEE 457 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L+ L+DDLP +RDG F+R G A +DE R L S+++IA+LQ +YAE + + L+IK Sbjct: 458 LARALADDLPLNRRDGNFVRAGYHAEIDEARLLGQDSRKVIAALQARYAEASGCRTLRIK 517 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 HNN LGY+IEV + K L F+HRQTM + RFT++EL +LE++I A++ Sbjct: 518 HNNVLGYYIEVPQAVGEACLKGLMQD--FVHRQTMVDAMRFTSVELGELESKIAGASDRV 575 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L +E F+ LS + E +E++ + ++ ++ +D++ + A LA E + RP+ID+S F + Sbjct: 576 LALESAVFDALSARVSEGAEAIADIAEALSGLDVAASHAELAVELAWTRPVIDDSLAFAI 635 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 + GRHP+VE L ++ + FIAN CDLS +G++ L+TGPNMGGKSTFLRQNALI Sbjct: 636 EGGRHPVVEAAL-MKAGEAFIANACDLS---GDEAGRIRLVTGPNMGGKSTFLRQNALIA 691 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++AQMG++VPA+ A +G+VD+LFSRVG+AD+LA G STFMVEM+ETA+ILNQAT +S V+ Sbjct: 692 VLAQMGAFVPAASARLGVVDRLFSRVGAADDLARGHSTFMVEMVETAAILNQATRRSLVV 751 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDEIGRGTAT DGLSIAWA +E+LHE N CR L ATHFHELT LS+ L R NATL+V++ Sbjct: 752 LDEIGRGTATFDGLSIAWACLEHLHEKNGCRALFATHFHELTALSQRLPRLDNATLKVAE 811 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF-----EKLYHHNQKD 849 ++FLH+V+PG+A+ SYG+QV +LAGLP +V++RA ILK E+ D Sbjct: 812 DRGDVVFLHEVVPGVAERSYGLQVARLAGLPPSVVARAGAILKGLETSERERPARRKIDD 871 Query: 850 MRLY--YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L+ + + D + I ++ D ++P AL LY +K Sbjct: 872 LPLFASLAAAPPPPPEPVKPEPDDRLGQLIDRIDPDALTPREALDALYRLK 922 >gi|218532535|ref|YP_002423351.1| DNA mismatch repair protein MutS [Methylobacterium chloromethanicum CM4] gi|218524838|gb|ACK85423.1| DNA mismatch repair protein MutS [Methylobacterium chloromethanicum CM4] Length = 916 Score = 817 bits (2111), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/891 (46%), Positives = 588/891 (65%), Gaps = 19/891 (2%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 ++ +TPMM QYIEIK+ NPD L+FYRMGDFYELFF+DA +ASR LGI LTKRGKH G D Sbjct: 26 DIPGATPMMAQYIEIKAANPDCLLFYRMGDFYELFFEDAEIASRALGIVLTKRGKHGGAD 85 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCGVP+ A+ Y+ +LI +GHR+A+C+Q E EAKKRG KS+VRR V+RLVTPGTLT Sbjct: 86 IPMCGVPLERADDYLHRLIALGHRVAVCQQTEDAAEAKKRGPKSVVRREVIRLVTPGTLT 145 Query: 141 EDQLLSPTDSNYLMAVARIRTE-----WAIAWIDISTGIFKISTSNHDRLISDIMRIDPR 195 ED+LL PT +N L+A+ R + + +A +DISTG F +S L + I R +PR Sbjct: 146 EDRLLDPTRANLLLAIGRRKVSDTSEAYGLAALDISTGRFSLSEVESSELAAAIARHEPR 205 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQV 255 EI+ SE + L+ V + + +E RI + + + T+D FG+FS+ Sbjct: 206 EIVLSEVIHADPGLAKLWRETKAAVVPLAQGELEPASAERRIREQFGVKTLDGFGNFSRA 265 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 E AA AA+ Y+++TQ+ + + P RE +TL ID+A R+NLE+ RTLSG R+ SLL Sbjct: 266 EIAAAGAALLYLERTQLGTRVPLSAPSREATGATLAIDAATRANLELTRTLSGERKGSLL 325 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 ID +++ G RL AE +A PLTD TKI R D++ F + L ++ L ++PD+ Sbjct: 326 DAIDRTVSAGGARLLAEHLAGPLTDLTKIGRRHDAVAFLADDGALRAHLRDALHAAPDIA 385 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINIL-NLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R+LSR+ + R P+D+A +RDG+ + I L + +LP+ L +L K ++L + Sbjct: 386 RALSRIGLNRAGPRDLAALRDGLDAAATIAEQLRAEENLPDGLTRLARRLDKADRALAEE 445 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L+ L+DDLP +RDG F+R G A +DE R L S+++IA+LQ +YAE + + L+IK Sbjct: 446 LARALADDLPLNRRDGNFVRAGYHAEIDEARLLGQDSRKVIAALQARYAEASGCRTLRIK 505 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 HNN LGY+IEV + K L F+HRQTM + RFT++EL +LE++I A++ Sbjct: 506 HNNVLGYYIEVPQAVGEACLKGLMQD--FVHRQTMVDAMRFTSVELGELESKIAGASDRV 563 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L +E F+ LS + E +E++ + ++ ++ +D++ + A LA E + RP+ID+S F + Sbjct: 564 LALESAVFDTLSARVSEGAEAIADIAEALSGLDVAASHAELAVELAWTRPVIDDSLAFAI 623 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 + GRHP+VE L + + + FIAN CDLS +G++ L+TGPNMGGKSTFLRQNALI Sbjct: 624 EGGRHPVVEAALTK-AGEAFIANACDLSS---DEAGRIRLVTGPNMGGKSTFLRQNALIA 679 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++AQMG++VPA+ A +G+VD+LFSRVG+AD+LA G STFMVEM+ETA+ILNQAT +S V+ Sbjct: 680 VLAQMGAFVPAASARLGVVDRLFSRVGAADDLARGHSTFMVEMVETAAILNQATRRSLVV 739 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDEIGRGTAT DGLSIAWA +E+LHE N CR L ATHFHELT LS+ L R NATL+V++ Sbjct: 740 LDEIGRGTATFDGLSIAWACLEHLHEKNGCRALFATHFHELTALSQRLPRLDNATLKVAE 799 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF-----EKLYHHNQKD 849 ++FLH+V+PG+A+ SYG+QV +LAGLP +V++RA ILK E+ D Sbjct: 800 DRGDVVFLHEVVPGVAERSYGLQVARLAGLPPSVVARAGAILKGLESSERERPARRKIDD 859 Query: 850 MRLYYPEIQTKESKNNLSKN--DKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L+ K+ D + I L+ D ++P AL LY +K Sbjct: 860 LPLFASLAAAPPPPPEPVKSEPDDRLGQLIDRLDPDALTPREALDALYRLK 910 >gi|99082715|ref|YP_614869.1| DNA mismatch repair protein MutS [Ruegeria sp. TM1040] gi|123378587|sp|Q1GCK9|MUTS_SILST RecName: Full=DNA mismatch repair protein mutS gi|99038995|gb|ABF65607.1| DNA mismatch repair protein MutS [Ruegeria sp. TM1040] Length = 879 Score = 815 bits (2106), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/889 (47%), Positives = 582/889 (65%), Gaps = 30/889 (3%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S TPMM QY+EIK+ PD+L+FYRMGDFYE+FF+DA+ A+ L I LTKRGKH G+DIPM Sbjct: 2 SVTPMMAQYLEIKAQYPDALLFYRMGDFYEMFFEDAVNAAEALDIALTKRGKHEGEDIPM 61 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVPVH A Y+ LI+ G R+A+ EQ+ESP EAKKRG+KS+V+R+VVRLVTPGTLTED Sbjct: 62 CGVPVHAAEGYLLTLIRKGFRVAVGEQLESPAEAKKRGSKSVVKRDVVRLVTPGTLTEDS 121 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 LL N+L+A + +R + A+AW DISTG F + RL ++ R+ P E+I ++ Sbjct: 122 LLEARRHNFLVAYSELRDQAALAWADISTGAFHVMPVARVRLSPELARLAPSELIVADGP 181 Query: 204 LSHA------EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 + A EYK LG + FD + +E R+ +N++ +D FG+F++ E Sbjct: 182 IFDATLPLAEEYKIPLTPLGKAS-------FDSTAAEKRLCHLFNVSALDGFGTFNRAEI 234 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 +A A + Y++ TQ P + P +E T+ ID++ R NLE+ R+LSG R SLL Sbjct: 235 SAMGAVVDYLEITQKGKLPLLQPPLQESEDRTVQIDASTRRNLELTRSLSGGRAGSLLSV 294 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D ++T G RL +R++SP + I+ RL++++ +++PI + ++ +L+ +PD+ R+ Sbjct: 295 VDRTVTPGGARLLEQRLSSPSRNLDVISARLEALDTIVEDPIRCDTLRGLLRKTPDIDRA 354 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 LSRL + RG P+D+A IR+ + G +I DLP LR A L+ L ++ Sbjct: 355 LSRLALDRGGPRDLAAIRNALSQGEDIERALQDPDLPTLLRDAAHSLEGFQDLLSLLDAA 414 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 ++++ P RDGGF+ G D LDE R+LRD+ + +IA LQ KYAE T I +LKIKHNN Sbjct: 415 LIAEP-PLLARDGGFIAAGYDRELDEARTLRDEGRSVIAGLQKKYAEHTGISSLKIKHNN 473 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 LGYFIE TS+ A+ ++ S D +IHRQT +N RFTT+EL ++E +I NA N AL I Sbjct: 474 VLGYFIETTSTHAAKMQSAPMS-DTYIHRQTTANQVRFTTVELSEIETKILNAGNLALEI 532 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E ++ LS AI++ + L+ A++ A ID+ ALA LA+ +N+ RP +D S F V G Sbjct: 533 EKRLYQRLSGAILDSAARLNQAARGFAEIDLVTALADLARAENWTRPRVDTSRAFHVDGG 592 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ L+ Q F+ANDCDLS P D +WLLTGPNM GKSTFLRQNALI ++A Sbjct: 593 RHPVVEQALRHQGGDSFVANDCDLS-PQD--GAAIWLLTGPNMAGKSTFLRQNALIAVLA 649 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 QMGSYVPA AHIG++ +LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA +++ VILDE Sbjct: 650 QMGSYVPAEAAHIGMISQLFSRVGASDDLARGRSTFMVEMVETAAILNQADDRALVILDE 709 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGTAT DGLSIAWAT+E+LHE NR R L ATH+HELT L+ L NAT+ V + Sbjct: 710 IGRGTATYDGLSIAWATLEHLHEVNRSRALFATHYHELTQLATKLTGVENATVSVKEWEG 769 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 +IFLH+V G AD SYG+QV +LAGLP +V++RA +L EK ++ ++ Sbjct: 770 EVIFLHEVKKGAADRSYGVQVAQLAGLPASVVARARSVLDMLEKSSREGGGAGKVQIDDL 829 Query: 858 QTKESKNNL--------SKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + S +KL E D+++P AL+TLY +K Sbjct: 830 PLFAAAPAPQPKPAQGPSPVEKLLEEIFP----DDLTPREALETLYRLK 874 >gi|254563613|ref|YP_003070708.1| DNA mismatch repair protein mutS [Methylobacterium extorquens DM4] gi|254270891|emb|CAX26896.1| DNA mismatch repair protein mutS [Methylobacterium extorquens DM4] Length = 928 Score = 813 bits (2099), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/891 (46%), Positives = 587/891 (65%), Gaps = 19/891 (2%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 ++ +TPMM QYIEIK+ NPD L+FYRMGDFYELFF+DA +ASR LGI LTKRGKH G D Sbjct: 38 DIPGATPMMAQYIEIKAANPDCLLFYRMGDFYELFFEDAEIASRALGIVLTKRGKHGGAD 97 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCGVP+ A+ Y+ +LI +GHR+A+C+Q E EAKKRG KS+VRR V+RLVTPGTLT Sbjct: 98 IPMCGVPLERADDYLHRLIALGHRVAVCQQTEDAAEAKKRGPKSVVRREVIRLVTPGTLT 157 Query: 141 EDQLLSPTDSNYLMAVARIRTE-----WAIAWIDISTGIFKISTSNHDRLISDIMRIDPR 195 ED+LL PT +N L+A+ R + + +A +DISTG F +S L + I R +PR Sbjct: 158 EDRLLDPTRANLLLAIGRRKVSDTSEAYGLAALDISTGRFSLSEVESSELAAAIARHEPR 217 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQV 255 EI+ SE + L+ V + + +E RI + + + T+D FG+FS+ Sbjct: 218 EIVLSEVIHADPGLAKLWRETKAAVVPLAQGELEPASAERRIREQFGVKTLDGFGNFSRA 277 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 E AA AA+ Y+++TQ+ + + P RE +TL ID+A R+NLE+ RTLSG R+ SLL Sbjct: 278 EIAAAGAALLYLERTQLGTRVPLSAPSREATGATLAIDAATRANLELTRTLSGERKGSLL 337 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 ID +++ G RL AE +A PLTD T+I R D++ F ++ L ++ L ++PD+ Sbjct: 338 DAIDRTVSAGGARLLAEHLAGPLTDLTEIGRRHDAVAFLAEDGALRAHLRDALHAAPDIA 397 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINIL-NLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R+LSR+ + R P+D+A +R G+ + I L + +LP+ L +L K ++L Sbjct: 398 RALSRIGLNRAGPRDLAALRAGLDAAATIAEQLRAEENLPDGLTRLARRLDKADRALADE 457 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L+ L+DDLP +RDG F+R G A +DE R L S+++IA+LQ +YAE + + L+IK Sbjct: 458 LAQALADDLPLNRRDGNFVRAGYHAEIDEARLLGQDSRKVIAALQARYAEASGCRTLRIK 517 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 HNN LGY+IEV + K L F+HRQTM + RFT++EL +LE++I A++ Sbjct: 518 HNNVLGYYIEVPQAVGEACLKGLMQD--FVHRQTMVDAMRFTSVELGELESKIAGASDRV 575 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L +E F+ LS + E +E++ + ++ ++ +D++ + A LA E + RP+ID+S F + Sbjct: 576 LALESAVFDALSARVSEGAEAIADIAEALSGLDVAASHAELAVELAWTRPLIDDSLAFAI 635 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 + GRHP+VE L + + + FIAN CDLS +G++ L+TGPNMGGKSTFLRQNALI Sbjct: 636 EGGRHPVVEAALTK-AGEAFIANACDLS---GDEAGRIRLVTGPNMGGKSTFLRQNALIA 691 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++AQMG++VPA+ A +G+VD+LFSRVG+AD+LA G STFMVEM+ETA+ILNQAT +S V+ Sbjct: 692 VLAQMGAFVPAASARLGVVDRLFSRVGAADDLARGHSTFMVEMVETAAILNQATRRSLVV 751 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDEIGRGTAT DGLSIAWA +E+LHE N CR L ATHFHELT LS+ L R NATL+V++ Sbjct: 752 LDEIGRGTATFDGLSIAWACLEHLHEKNGCRALFATHFHELTALSQRLPRLDNATLKVAE 811 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF-----EKLYHHNQKD 849 ++FLH+V+PG+A+ SYG+QV +LAGLP +V++RA ILK E+ D Sbjct: 812 DRGDVVFLHEVVPGVAERSYGLQVARLAGLPPSVVARAGAILKGLETSERERPARRKIDD 871 Query: 850 MRLY--YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L+ + + D + I L+ D M+P AL LY +K Sbjct: 872 LPLFASLAAAPPPPPEPVKPEPDDRLGQLIDRLDPDAMTPREALDALYRLK 922 >gi|288958553|ref|YP_003448894.1| DNA mismatch repair protein [Azospirillum sp. B510] gi|288910861|dbj|BAI72350.1| DNA mismatch repair protein [Azospirillum sp. B510] Length = 893 Score = 812 bits (2098), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/885 (46%), Positives = 571/885 (64%), Gaps = 17/885 (1%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM QY+EIK +PD L+FYRMGDFYE+FF+DA+ A+ L I LTKRG+HLG+DIPMC Sbjct: 13 ATPMMAQYLEIKQAHPDCLLFYRMGDFYEMFFEDAVNAAAALDIALTKRGQHLGEDIPMC 72 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVPVH+ +Y+Q+LI+ G R+AICEQ+E P EAKKRG KS+V+R V+R+VTPGTLTED L Sbjct: 73 GVPVHSHENYLQRLIRQGFRVAICEQMEDPAEAKKRGAKSVVKRGVIRIVTPGTLTEDSL 132 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 L SN+L AVA +AW+++STG + L + R+DP+E++ SEK Sbjct: 133 LDARSSNWLAAVAETAGGLGLAWLEMSTGELVVQPVERGGLGAAFGRLDPQEVLVSEKLS 192 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 E L+ + QP FD R+ Y + T+D FGSF++ E AA A + Sbjct: 193 QAPELFELWAEWKSRLTIQPTPRFDSENGRQRLLALYGVGTLDAFGSFTRAEVAAAGALV 252 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 Y++ TQ P + P R + + ID++ NLE+ RTL+G R SLL TID ++TG Sbjct: 253 GYVELTQKGRVPRLSPPRRLGPGAVMEIDASTARNLELTRTLAGERRGSLLATIDRTVTG 312 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 AG RL +A+PLTD I RLD + F + L ++ L+ PD+ R+LSRL +G Sbjct: 313 AGARLLCAHLAAPLTDPAAIGRRLDMVEFALAGERLRGELRHALRGCPDLERALSRLTLG 372 Query: 385 RGEPKDIAVIRDGIRSGINILNLFLKN-DLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 RG P+D+A +RDG+R I L LP+ L A++K L L+ L+ +L Sbjct: 373 RGGPRDLAAVRDGLRQAGLIRGLLAAAMPLPDGL-AALDKRLGAHAELVDQLTQALAPEL 431 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P RDGGF+ +LDE +LRD+S+R+IA LQ KYAE + +LK+KHNN LGY I Sbjct: 432 PLLARDGGFIARDYSYALDELVTLRDESRRLIAGLQSKYAEIAGVPSLKVKHNNVLGYHI 491 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EVT++ A L D ++++ F+HRQTM+N RF T+EL DLE RI+ A + AL +ELE F Sbjct: 492 EVTAAHADKLMSD-KAREVFMHRQTMANAVRFGTVELSDLERRISEAADRALAVELELFA 550 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L A+ +++++ A+ +A +D++ +LA LA+E+ Y RP++D+S F + GRHP+VE Sbjct: 551 GLVEAVAAKADAIAQAAHALAALDVATSLAELAEERRYSRPLVDDSLAFTIVGGRHPVVE 610 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 L PF+ANDCDL+ N +LWLLTGPNM GKSTFLRQNALI ++AQMG +V Sbjct: 611 AVLDAAHGGPFVANDCDLAPEN-----RLWLLTGPNMAGKSTFLRQNALIAVLAQMGGFV 665 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA AHIG+VD+L+SRVG+AD+LA GRSTFMVEM+ETA+ILNQ+ +++ VILDEIGRGTA Sbjct: 666 PAERAHIGVVDRLYSRVGAADDLARGRSTFMVEMVETAAILNQSGSRALVILDEIGRGTA 725 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DGLSIAWA +E+LH+ NRCR L ATH+HELT L+ L T+++ + ++FLH Sbjct: 726 TFDGLSIAWACVEHLHDVNRCRALFATHYHELTMLASKLPALSCHTMRIKEWQGDVVFLH 785 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE-----KLYHHNQKDMRLYYPEIQ 858 +V G AD SYGI V KLAGLP V+ RA ++LK E H +D+ L+ ++ Sbjct: 786 EVTAGAADRSYGIHVAKLAGLPAAVVGRADEVLKLLESGDQNATIHRLAEDLPLFSAALK 845 Query: 859 ----TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 T + + E + ++ D ++P AL+ LY ++ Sbjct: 846 RPAPTATAAEPIPAGPSPVEEALSGIDPDSLTPRQALEELYRLRG 890 >gi|83953086|ref|ZP_00961808.1| DNA mismatch repair protein [Sulfitobacter sp. NAS-14.1] gi|83842054|gb|EAP81222.1| DNA mismatch repair protein [Sulfitobacter sp. NAS-14.1] Length = 881 Score = 811 bits (2096), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/881 (48%), Positives = 568/881 (64%), Gaps = 19/881 (2%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY+E+KS ++L+FYRMGDFYE+FFDDA+ A+ L I LTKRGKH G+DIPMCG Sbjct: 7 TPMMAQYLELKSQYAEALLFYRMGDFYEMFFDDAVAAAEALDIALTKRGKHGGEDIPMCG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH A Y+ LI+ G R+A+CEQ+ESP EAKKRG KS+V+R+VVRLVTPGTLTE+ LL Sbjct: 67 VPVHAAEGYLLTLIRKGFRVAVCEQMESPAEAKKRGYKSVVKRDVVRLVTPGTLTEESLL 126 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 NYL A A +R A+AW+DISTG F + RL ++ R+ P E+I SE + Sbjct: 127 EARRHNYLAAFAEVRDGHALAWVDISTGAFHVMPLTLSRLGPELARLSPSELIVSEAK-- 184 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAIS 265 A+ + L FD S +E R+ D + I ++D FGSF + + +A A I Sbjct: 185 EADLRELVSDFDIALTPIARSAFDSSSAEKRVCDLFGIGSLDAFGSFERADISAMGAIID 244 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y++ TQ P + P++E ++ ID+A R NLE+ L+G R +LL +D ++T Sbjct: 245 YLEITQKGKLPLLRPPQKEAEARSVQIDAATRRNLELTHALTGGRAGTLLSVMDKTVTAG 304 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 G RL RI+SP I +RLD+I F P + N I++ L++ PD+ R+LSRL + R Sbjct: 305 GARLLERRISSPSRVLETIQSRLDAIGFAYDTPSIRNDIRQHLRNVPDLDRALSRLSLDR 364 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPT 445 G P+D+A IR+G+ ++ + LP+ L A + L SL L L + P Sbjct: 365 GGPRDLAAIRNGLTEASHLADKMQAAALPDLLAQAAKGLTG-HDSLIDLLDDALIAEPPL 423 Query: 446 FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEV 505 RDGGF+ G DA LDE R+LRD+ + +IA +Q + T I LKIKHNN LGYF EV Sbjct: 424 LARDGGFIAPGYDAELDEVRTLRDEGRSVIAQMQQDFITLTGISTLKIKHNNVLGYFAEV 483 Query: 506 TSSSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEI 564 T++ A +L L D FIHRQT +N RFTT+EL ++E +I NA N AL IE +E Sbjct: 484 TATHAEKMLSAPL--SDTFIHRQTTANQVRFTTVELSEMETKILNAGNHALEIEKRLYET 541 Query: 565 LSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEK 624 L AI++ S + AS +A ID++ LA LA+ +N+ +P +DNS F ++ GRHP+VE+ Sbjct: 542 LKRAILDHSGPIGVASAGLAEIDLAAGLADLAQSENWVKPRVDNSRAFDIQGGRHPVVER 601 Query: 625 TLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684 L QQS PFIANDC LS D ++ +WLLTGPNM GKSTFLRQNA+I +MAQMGSYVP Sbjct: 602 ALAQQSGSPFIANDCTLSA--DGDNANIWLLTGPNMAGKSTFLRQNAIIALMAQMGSYVP 659 Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744 A+ AHIG++ ++FSRVG++D+LA GRSTFMVEM+ETA+ILNQA +++ VILDEIGRGTAT Sbjct: 660 AASAHIGLISQIFSRVGASDDLARGRSTFMVEMVETAAILNQADDRALVILDEIGRGTAT 719 Query: 745 LDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHK 804 DGLSIAWAT+E+LH+ NR R L ATH+HE+T LS L NAT+ V + + +IFLH+ Sbjct: 720 YDGLSIAWATLEHLHDINRSRALFATHYHEMTALSNKLGGVDNATVAVKEWDGEVIFLHE 779 Query: 805 VIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN---QK----DMRLYYPEI 857 V G AD SYG+QV +LAGLP +VI+RA +L+ EK QK D+ L+ Sbjct: 780 VRKGAADRSYGVQVAQLAGLPPSVIARARVVLEALEKGEREGGATQKTLIDDLPLFAVAP 839 Query: 858 QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 SK ++ E I DE+SP AL LY +K Sbjct: 840 APAPQPKQSSKLEETLAEIIP----DELSPREALDLLYKLK 876 >gi|126738494|ref|ZP_01754199.1| DNA mismatch repair protein [Roseobacter sp. SK209-2-6] gi|126720293|gb|EBA16999.1| DNA mismatch repair protein [Roseobacter sp. SK209-2-6] Length = 877 Score = 810 bits (2092), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/823 (50%), Positives = 550/823 (66%), Gaps = 20/823 (2%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY+EIK+ PD+L+FYRMGDFYE+FF+DA+ A+ L I LTKRGKH G DIPMCG Sbjct: 4 TPMMAQYLEIKAQYPDALLFYRMGDFYEMFFEDAVNAAEALDIALTKRGKHNGDDIPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH A Y+ LI+ G R+A+ EQ+ESP EAKKRG+KS+V+R+VVRLVTPGTLTED LL Sbjct: 64 VPVHAAEGYLLSLIRKGFRVAVGEQLESPAEAKKRGSKSVVKRDVVRLVTPGTLTEDSLL 123 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE---- 201 N+L++ + +R E A+AW DISTG F + N RL ++ R+ P E+I +E Sbjct: 124 EARRHNFLVSYSELREESALAWADISTGAFHVMPLNPVRLSPELARLAPSELILAEGATY 183 Query: 202 -KELSHA-EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 K + A E++ LG + FD + +E RI + + +D FGSFS+ E +A Sbjct: 184 EKTVPLADEFRIPITPLGKAS-------FDSTAAEKRICALFGVGALDGFGSFSRAEISA 236 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A I Y++ TQ P + P +E + ID++ R++LE+ R+LSGSR SLL +D Sbjct: 237 MGALIDYLEITQKGKLPLLQPPVQEAEDRVMQIDASTRASLELTRSLSGSRAGSLLAVVD 296 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 ++T G RL +R++SP + IN RL +++F ++ L ++ L+ +PD+ R+LS Sbjct: 297 RTVTPGGARLLEQRLSSPSRNLDVINARLAALDFAVEKDHLAADLRDALRKTPDLDRALS 356 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 RL + RG P+D+A IR+G+ I + DLP L GA L SL L L Sbjct: 357 RLALDRGGPRDLAAIRNGLAQAEAIAHRNASEDLPPLLVGATSDLTGF-DSLLDLLDRAL 415 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + P RDGGF+ G D LDE R+LRD+ + +IA Q KYAE T I +LKIKHNN L Sbjct: 416 VAEPPLLARDGGFIAAGYDEELDEARTLRDEGRSVIAGFQQKYAEHTGITSLKIKHNNVL 475 Query: 500 GYFIEVTSSSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GYFIE T++ A +L L + FIHRQT +N RFTT+EL ++E RI N+ N AL IE Sbjct: 476 GYFIETTATHADKMLSPPL--SESFIHRQTTANQVRFTTVELSEIETRILNSGNRALEIE 533 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + LS AI++Q+ L+ AS+ +A +D+ LA LA+ +N+ RP +D S + GR Sbjct: 534 KRLYSDLSRAILDQAPRLNAASRGLAELDLVTGLANLARGENWTRPKVDTSRALEISGGR 593 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ L+QQS FIANDCDLS + +WLLTGPNM GKSTFLRQNALI ++AQ Sbjct: 594 HPVVERALRQQSGDSFIANDCDLSA---EQGAAIWLLTGPNMAGKSTFLRQNALIALLAQ 650 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 MGSYVPA AHIG+V +LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA +Q+ VILDEI Sbjct: 651 MGSYVPAEAAHIGLVSQLFSRVGASDDLARGRSTFMVEMVETAAILNQADDQALVILDEI 710 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGTAT DGLSIAWAT+E+LHE NR R L ATH+HELT LS L NAT+ V + Sbjct: 711 GRGTATYDGLSIAWATLEHLHEVNRSRALFATHYHELTQLSNKLAGVENATVSVKEWEGE 770 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 +IFLH+V G AD SYG+QV +LAGLP +V++RA D+L E+ Sbjct: 771 VIFLHEVKKGAADRSYGVQVAQLAGLPASVVARARDVLDLLEQ 813 >gi|83942037|ref|ZP_00954499.1| DNA mismatch repair protein [Sulfitobacter sp. EE-36] gi|83847857|gb|EAP85732.1| DNA mismatch repair protein [Sulfitobacter sp. EE-36] Length = 873 Score = 808 bits (2086), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/879 (48%), Positives = 567/879 (64%), Gaps = 19/879 (2%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY+E+KS ++L+FYRMGDFYE+FFDDA+ A+ L I LTKRGKH G+DIPMCGVP Sbjct: 1 MMAQYLELKSQYAEALLFYRMGDFYEMFFDDAVAAAEALDIALTKRGKHGGEDIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 VH A Y+ LI+ G R+A+CEQ+ESP EAKKRG KS+V+R+VVRLVTPGTLTE+ LL Sbjct: 61 VHAAEGYLLTLIRKGFRVAVCEQMESPAEAKKRGYKSVVKRDVVRLVTPGTLTEESLLEA 120 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHA 207 NYL A A +R A+AW+DISTG F + RL ++ R+ P E+I SE + A Sbjct: 121 RRHNYLAAFAEVRDGHALAWVDISTGAFHVMPLTLSRLGPELARLSPSELIVSEAK--EA 178 Query: 208 EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYI 267 + + L FD S +E R+ D + I ++D FGSF + + +A A I Y+ Sbjct: 179 DLRELVSDFDIALTPIARSAFDSSSAEKRVCDLFGIGSLDAFGSFERADISAMGAIIDYL 238 Query: 268 KKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGG 327 + TQ P + P++E ++ ID+A R NLE+ L+G R +LL +D ++T G Sbjct: 239 EITQKGKLPLLRPPQKEAEARSVQIDAATRRNLELTHALTGGRAGTLLSVMDKTVTAGGA 298 Query: 328 RLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGE 387 RL RI+SP I +RLD+I+F P + N I++ L++ PD+ R+LSRL + RG Sbjct: 299 RLLERRISSPSRVLETIQSRLDAISFAYDTPSIRNDIRQHLRNVPDLDRALSRLSLDRGG 358 Query: 388 PKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFK 447 P+D+A IR+G+ ++ + LP+ L A + L SL L L + P Sbjct: 359 PRDLAAIRNGLTEASHLADKMQTAALPDLLAQAAKGLTG-HDSLIDLLDDALIAEPPLLA 417 Query: 448 RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTS 507 RDGGF+ G DA LDE R+LRD+ + +IA +Q + T I LKIKHNN LGYF EVTS Sbjct: 418 RDGGFIAPGYDAELDEVRTLRDEGRSVIAQMQQDFITLTGISTLKIKHNNVLGYFAEVTS 477 Query: 508 SSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILS 566 + A +L L D FIHRQT +N RFTT+EL ++E +I NA N AL IE +E L Sbjct: 478 THAEKMLSAPL--SDTFIHRQTTANQVRFTTVELSEMETKILNAGNHALEIEKRLYETLK 535 Query: 567 NAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTL 626 AI++ S + AS +A ID++ LA LA+ +N+ +P +DNS F ++ GRHP+VE+ L Sbjct: 536 RAILDHSGPIGVASAGLAEIDLATGLADLAQSENWVKPRVDNSRAFDIQGGRHPVVERAL 595 Query: 627 KQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPAS 686 QQS PFIANDC LS D ++ +WLLTGPNM GKSTFLRQNA+I +MAQMGSYVPA+ Sbjct: 596 AQQSGSPFIANDCTLSA--DGDNANIWLLTGPNMAGKSTFLRQNAIIALMAQMGSYVPAA 653 Query: 687 YAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLD 746 AHIG++ ++FSRVG++D+LA GRSTFMVEM+ETA+ILNQA +++ VILDEIGRGTAT D Sbjct: 654 TAHIGLISQIFSRVGASDDLARGRSTFMVEMVETAAILNQADDRALVILDEIGRGTATYD 713 Query: 747 GLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVI 806 GLSIAWAT+E+LH+ NR R L ATH+HE+T LS L NAT+ V + + +IFLH+V Sbjct: 714 GLSIAWATLEHLHDINRSRALFATHYHEMTALSNKLGGVDNATVAVKEWDGEVIFLHEVR 773 Query: 807 PGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN---QK----DMRLYYPEIQT 859 G AD SYG+QV +LAGLP +VI+RA +L+ EK QK D+ L+ Sbjct: 774 KGAADRSYGVQVAQLAGLPPSVIARARVVLEALEKGEREGGATQKTLIDDLPLFAVAPAP 833 Query: 860 KESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 SK ++ E I DE+SP AL LY +K Sbjct: 834 APQPKQSSKLEETLAEIIP----DELSPREALDLLYKLK 868 >gi|254464194|ref|ZP_05077605.1| DNA mismatch repair protein MutS [Rhodobacterales bacterium Y4I] gi|206685102|gb|EDZ45584.1| DNA mismatch repair protein MutS [Rhodobacterales bacterium Y4I] Length = 871 Score = 806 bits (2082), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/884 (47%), Positives = 583/884 (65%), Gaps = 30/884 (3%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY+EIK+ +PD+L+FYRMGDFYE+FF+DA+ A+ L I LTKRGKH G DIPMCGVP Sbjct: 1 MMAQYLEIKAAHPDALLFYRMGDFYEMFFEDAVNAAEALDIALTKRGKHNGDDIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 VH A Y+ LI+ G R+A+ EQ+ESP EAKKRG+KS+V+R+VVRLVTPGTLTED LL Sbjct: 61 VHAAEGYLLTLIRKGFRVAVGEQLESPAEAKKRGSKSVVKRDVVRLVTPGTLTEDSLLEA 120 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHA 207 N+L++ + +R E A+AW DISTG F + RL ++ R+ P E+I ++ A Sbjct: 121 RRHNFLVSYSELRDEAALAWADISTGAFHVMPVARVRLSPELARLAPSELIVADGPAYDA 180 Query: 208 ------EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 EYK LG + FD + +E RI +N++ +D FG+F++ E +A Sbjct: 181 ARPLADEYKIPLTPLGKAS-------FDSTAAEKRICSLFNVSALDGFGNFTRAEVSAMG 233 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 A I Y++ TQ P + P++E + ID+A R NLE+ R+LSG R SLL +D + Sbjct: 234 ALIDYLEITQKGKLPLMQPPQQEAQDRVVQIDAATRRNLELTRSLSGGRAGSLLSVVDRT 293 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +T G RL +R++SP + IN RL +++F +++ ++ L+ +PD+ R+LSRL Sbjct: 294 VTPGGARLLEQRLSSPSRNLDTINQRLAALDFAVEHTRTAEDLRAALRKTPDLDRALSRL 353 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 + RG P+D+A IR+G+ I L + +LP + GAV L+ +L L + L Sbjct: 354 ALERGGPRDLAAIRNGLSQAEVIAGLCSRMELPALVAGAVSDLQGF-DNLLSLLDAALVA 412 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + P RDGG++ G D LDE R+LRD+ + +IAS+Q KYAE T + +LKIKHNN LGY Sbjct: 413 EPPLLARDGGYIAAGYDPELDEARTLRDEGRSVIASMQRKYAEHTGVSSLKIKHNNVLGY 472 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 FIE T++ A + + +IHRQT +N RFTT+EL ++E RI NA N AL IE Sbjct: 473 FIETTATHADKMMSP-PLNETYIHRQTTANQVRFTTVELSEIETRILNAGNLALEIEKRL 531 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 + LS AI++ + L+ A++ +A +D+ ALA LA+ +N+ RP +DNS F V+ GRHP+ Sbjct: 532 YTRLSGAILDTAARLNTAARGLAELDLLTALADLARGENWTRPKVDNSRAFHVEGGRHPV 591 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE+ L+QQ + F+ANDCDL+ ++ +WLLTGPNM GKSTFLRQNALI ++AQMGS Sbjct: 592 VEQALRQQGGETFVANDCDLTA---QDGAAVWLLTGPNMAGKSTFLRQNALIALLAQMGS 648 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 YVPA AHIGIV +LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA +++ VILDEIGRG Sbjct: 649 YVPADGAHIGIVSQLFSRVGASDDLARGRSTFMVEMVETAAILNQADDRALVILDEIGRG 708 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 TAT DGLSIAWAT+E+LHE NR R L ATH+HELT L+ L+ NAT+ V + +IF Sbjct: 709 TATYDGLSIAWATLEHLHEVNRSRALFATHYHELTQLAAKLEGVDNATVAVKEWEGEVIF 768 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DMRLY--Y 854 LH+V G AD SYG+QV +LAGLP +V++RA D+L E+ D+ L+ Sbjct: 769 LHEVRKGAADRSYGVQVAQLAGLPASVVARARDVLDMLEQSSREGGSKIQIDDLPLFAAA 828 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P Q K + S +K+ + ++ DE+SP AL+ LY +K Sbjct: 829 PPQQPK-APAGPSPAEKM----LAAIHPDELSPREALEMLYKLK 867 >gi|170747055|ref|YP_001753315.1| DNA mismatch repair protein MutS [Methylobacterium radiotolerans JCM 2831] gi|170653577|gb|ACB22632.1| DNA mismatch repair protein MutS [Methylobacterium radiotolerans JCM 2831] Length = 905 Score = 805 bits (2078), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/884 (48%), Positives = 590/884 (66%), Gaps = 16/884 (1%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 +TPMM QYIEIK+ NPD L+FYRMGDFYELFF+DA ASR LGI LTKRGKH G +IPM Sbjct: 22 GATPMMAQYIEIKAANPDCLLFYRMGDFYELFFEDAETASRALGIVLTKRGKHAGSEIPM 81 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVPV ++ Y+ +LI +GHR+A+CEQ E P EAKKRG KS+VRR VVRLVTPGT+TED+ Sbjct: 82 CGVPVERSDDYLNRLIALGHRVAVCEQTEDPAEAKKRGPKSVVRREVVRLVTPGTITEDR 141 Query: 144 LLSPTDSNYLMAVARIRT-EWAIAW----IDISTGIFKISTSNHDRLISDIMRIDPREII 198 LL P +N L+A+ R +T E A+A+ +DISTG F +S L I R DPREI+ Sbjct: 142 LLDPARANLLLAIGRRKTGEGAVAYGLAAVDISTGRFSLSEVAGGDLSGAIARHDPREIV 201 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 SE + L++ V + + +E R+ + Y ++T++ FG F++ E Sbjct: 202 LSEAIHADPALARLWQESRAAVVPLAQAELEPAAAERRLREQYGVSTLEGFGQFTRAEIA 261 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA AA+ YI +TQ+ +P + P RED +TL ID+A R+NLE+ RTLSG R SLL TI Sbjct: 262 AAGAALLYIARTQLAARPPLAVPTREDGGATLAIDAATRANLELTRTLSGERAGSLLATI 321 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D ++T G RL AE +A PLT I R ++ + +++ L ++ L +PD+ R+L Sbjct: 322 DRTVTANGARLLAEHLAGPLTHLDAIARRHAAVAYLVEDARLRGGLRDALARAPDLARAL 381 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINI-LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 SR +GR P+D+A IRDG+ ++ L LP +L E L + L TL++ Sbjct: 382 SRTGLGRAGPRDLAAIRDGLAVAADLGARLAAIPGLPVDLARLAEHLAEADPELIATLAA 441 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 L+D+LP +RDGGF+R G +DE R+L S+++IA+LQ +YAE+T + L+IKHNN Sbjct: 442 ALADELPLSRRDGGFVRAGYHPEIDEARTLGQDSRKVIAALQARYAEQTGCRTLRIKHNN 501 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 LGYFIEV S K L+S+ F+HRQTM + RFT++EL +LE++I+ A++ AL + Sbjct: 502 LLGYFIEVPQSVGEACLKGLQSE--FVHRQTMVDAMRFTSVELGELESKISGASDRALAL 559 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E F+ L+ ++ ++E + ++ +A +D++ + A LA E ++ RP++D S +F+V G Sbjct: 560 EAAVFDDLAARVLARAEPIAEVAEALAGLDVAASHAELAVELDWRRPVVDESLSFVVVGG 619 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE L++ + +PFIANDCDLS G++ L+TGPNMGGKSTFLRQNALI ++A Sbjct: 620 RHPVVEAALRR-AGEPFIANDCDLS---GDTRGRIRLITGPNMGGKSTFLRQNALIAVLA 675 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 QMG++VPA+ A IG VD+LFSRVG+AD+LA G+STFMVEM+ETA+ILNQAT +S VILDE Sbjct: 676 QMGAFVPAAEARIGRVDRLFSRVGAADDLARGQSTFMVEMVETAAILNQATRRSLVILDE 735 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGTAT DGLSIAWA +E+LHE N CR L ATHFHELT L L R NATL+V++ + Sbjct: 736 IGRGTATFDGLSIAWACLEHLHEVNACRALFATHFHELTALGDRLARLENATLKVAEHRD 795 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL---YY 854 G++FLH+V+PG+A+ SYG+QV +LAGLP +V++RA ILK+ EK R+ Sbjct: 796 GVVFLHEVVPGVAERSYGLQVARLAGLPGSVVTRAGAILKSLEKAERGRPARARIDDLPL 855 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + D L + ++ D ++P AL LY +K Sbjct: 856 FAALAPPPPPEPPREDPLGA-LLDAIDPDALTPREALDALYRLK 898 >gi|259417732|ref|ZP_05741651.1| DNA mismatch repair protein MutS [Silicibacter sp. TrichCH4B] gi|259346638|gb|EEW58452.1| DNA mismatch repair protein MutS [Silicibacter sp. TrichCH4B] Length = 879 Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/824 (49%), Positives = 555/824 (67%), Gaps = 18/824 (2%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S TPMM QY+EIK+ PD+L+FYRMGDFYE+FF+DA+ A+ L I LTKRGKH G+DIPM Sbjct: 2 SVTPMMAQYLEIKAQYPDALLFYRMGDFYEMFFEDAVNAAEALDIALTKRGKHEGEDIPM 61 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVPVH A Y+ LI+ G R+A+ EQ+ESP EAKKRG+KS+V+R+VVRLVTPGTLTED Sbjct: 62 CGVPVHAAEGYLLTLIRKGFRVAVGEQLESPAEAKKRGSKSVVKRDVVRLVTPGTLTEDS 121 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 LL N+L+A + +R + A+AW DISTG+F + RL ++ R+ P E+I ++ Sbjct: 122 LLEARRHNFLVAYSELRDQAALAWADISTGVFHVMPVARVRLSPELARLAPSELIVADGA 181 Query: 204 LSHA------EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 + A EYK LG + FD + +E R+ +N+ +D FG+FS+ E Sbjct: 182 VYDATLPLADEYKIPLTPLGKAS-------FDSTAAEKRLCRLFNVGALDGFGTFSRAEI 234 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 +A A + Y++ TQ P + +P +E T+ ID++ R NLE+ R+LSG R SLL Sbjct: 235 SAMGAVVDYLEITQKGKLPLLQHPLQESEDRTVQIDASTRRNLELTRSLSGGRAGSLLAV 294 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D ++T G RL +R++SP + I++RL +++ +++ + ++ +L+ +PD+ R+ Sbjct: 295 VDRTVTPGGARLLEQRLSSPSRNLDVISSRLAALDTAVEDLTRSDALRGLLRKTPDIDRA 354 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 LSRL + RG P+D+A +R+ + G I DLP L A L + L L + Sbjct: 355 LSRLALDRGGPRDLAAVRNALTQGEEIERELQDRDLPPLLTEAKNSLGGFDELL-SLLDA 413 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 L + P RDGGF+ G D+ LDE R+LRD+ + +IA LQ KYAE T I +LKIKHNN Sbjct: 414 ALIAEPPLLARDGGFIAAGYDSELDEARTLRDEGRSVIAGLQKKYAEHTGINSLKIKHNN 473 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 LGYFIE T++ A+ ++ S + +IHRQT +N RFTT+EL ++E +I NA N AL I Sbjct: 474 VLGYFIETTATHAAKMQSAPMS-ETYIHRQTTANQVRFTTVELSEIETKILNAGNLALEI 532 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E ++ L +AI++ + L+ A++ A ID+ ALA LA+ +N+ RP +D S F V G Sbjct: 533 EKRLYQRLCSAILDCAARLNQAARGFAEIDLVTALADLARGENWTRPRVDTSRAFHVDGG 592 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ L+QQ + F+ANDCDLS + +WLLTGPNM GKSTFLRQNALI ++A Sbjct: 593 RHPVVEQALRQQGGETFVANDCDLST---DDGAAVWLLTGPNMAGKSTFLRQNALIAVLA 649 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 QMGSYVPA AHIG+V +LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA +++ VILDE Sbjct: 650 QMGSYVPAESAHIGMVSQLFSRVGASDDLARGRSTFMVEMVETAAILNQADDRALVILDE 709 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGTAT DGLSIAWAT+E+LHE NR R L ATH+HELT L+ L NAT+ V + Sbjct: 710 IGRGTATYDGLSIAWATLEHLHEVNRSRALFATHYHELTQLAAKLPGVDNATVSVKEWEG 769 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 +IFLH+V G AD SYG+QV +LAGLP +V+ RA +L EK Sbjct: 770 EVIFLHEVKKGAADRSYGVQVAQLAGLPASVVERARSVLDMLEK 813 >gi|254510978|ref|ZP_05123045.1| DNA mismatch repair protein MutS [Rhodobacteraceae bacterium KLH11] gi|221534689|gb|EEE37677.1| DNA mismatch repair protein MutS [Rhodobacteraceae bacterium KLH11] Length = 871 Score = 804 bits (2076), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/873 (47%), Positives = 565/873 (64%), Gaps = 9/873 (1%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY+EIK + D+L+FYRMGDFYE+FF+DA+ A+ L I LTKRGKH G DIPMCGVP Sbjct: 1 MMAQYLEIKEAHADALLFYRMGDFYEMFFEDAVNAAEALDIALTKRGKHNGTDIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 VH+A Y+ LI+ G R+A+CEQ+ESP EAKKRG+KS+V+R+VVRLVTPGTLTED LL Sbjct: 61 VHSAEGYLLTLIRKGFRVAVCEQMESPAEAKKRGSKSVVKRDVVRLVTPGTLTEDALLEA 120 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHA 207 N+L A + +R E A+AW DISTG F + RL ++ R+ P E+I ++ S Sbjct: 121 RRHNFLAAYSEVRDEAALAWADISTGAFHVMPLTSVRLSPELARLAPSELIVADG--SDQ 178 Query: 208 EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYI 267 + LG FD + +E RI +N+ +D FG+F++ E +A A I Y+ Sbjct: 179 ALQEPVRDLGISLSPIGRASFDSTAAEKRICGLFNVGALDAFGNFARAEVSAMGALIDYL 238 Query: 268 KKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGG 327 + TQ P + P +E + ID+A R NLE+ R+LSG R SLL +D + T G Sbjct: 239 EITQKGKLPLLQTPLKESEDRVVQIDAATRRNLELTRSLSGGRAGSLLSVVDRTTTPGGA 298 Query: 328 RLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGE 387 RL +R++SP + I RLD+++F + + + +++ L+ +PD+ R+LSRL + RG Sbjct: 299 RLLEQRLSSPSRNLDVIRMRLDAVSFATDDSLTTSDLREALRKTPDLDRALSRLSLDRGG 358 Query: 388 PKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFK 447 P+D+A IR+G+ I L +DLPE L AV L L +++++ P Sbjct: 359 PRDLAAIRNGLTQASAIAALCENHDLPEVLATAVRNLIGFDDLLNLLDDALVAEP-PLLA 417 Query: 448 RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTS 507 RDGGF+ G D LDE R+LRD+ + +IA Q KYAE T I +LKIKHNN LGYFIE T+ Sbjct: 418 RDGGFIAPGFDGELDEARTLRDEGRSVIAGFQQKYAEHTGITSLKIKHNNVLGYFIETTA 477 Query: 508 SSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSN 567 + A + S + +IHRQT +N RFTT+EL ++E RI NA N AL IE ++ LS+ Sbjct: 478 THAEKMLNPPFS-ETYIHRQTTANQVRFTTVELSEIETRILNAGNLALEIEKRLYQRLSD 536 Query: 568 AIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLK 627 I+ + L+ A++ +A +D++ ALA LA+ +N+CRP +D S F ++ GRHP+VE L+ Sbjct: 537 EILTLAARLNQAARGLAELDLTTALADLARGENWCRPQVDTSRMFDIQGGRHPVVEHALR 596 Query: 628 QQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASY 687 QQ+ F+ANDCDLS ++ +WLLTGPNM GKSTFLRQNALI ++AQMGS+VPA Sbjct: 597 QQNGDAFVANDCDLSA---TDNAAIWLLTGPNMAGKSTFLRQNALIALLAQMGSFVPAEQ 653 Query: 688 AHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDG 747 AHIG+V +LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA +++ VILDEIGRGTAT DG Sbjct: 654 AHIGVVSQLFSRVGASDDLARGRSTFMVEMVETAAILNQADDRALVILDEIGRGTATYDG 713 Query: 748 LSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIP 807 LSIAWAT+E+LH TN+CR L ATH+HELT L+ L+ NAT+ V + +IFLH+V Sbjct: 714 LSIAWATLEHLHATNKCRALFATHYHELTALAGKLEGVDNATVAVKEWEGEVIFLHEVHK 773 Query: 808 GIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY--YPEIQTKESKNN 865 G AD SYG+QV +LAGLP +V+ RA +L EK K L P Sbjct: 774 GAADRSYGVQVAQLAGLPASVVERARVVLDQLEKTEREGGKQKALIDDLPLFSAAPPSPP 833 Query: 866 LSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + + + DE++P AL +Y +K Sbjct: 834 PTPKPSPLTDMLNDILPDELTPREALDLIYKLK 866 >gi|126730094|ref|ZP_01745906.1| DNA mismatch repair protein [Sagittula stellata E-37] gi|126709474|gb|EBA08528.1| DNA mismatch repair protein [Sagittula stellata E-37] Length = 877 Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/880 (47%), Positives = 564/880 (64%), Gaps = 17/880 (1%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY+EIK+ PD+L+FYRMGDFYE+FFDDA+ AS L I LTKRGKH G DIPMCG Sbjct: 5 TPMMAQYLEIKAQYPDALLFYRMGDFYEMFFDDAVAASEALDIALTKRGKHDGDDIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH A Y+ LI+ G R+A+ EQ+ESP EAKKRG K++V+R+VVRLVTPGTLTED LL Sbjct: 65 VPVHAAEGYLLTLIRKGFRVAVGEQLESPEEAKKRGYKAVVKRDVVRLVTPGTLTEDTLL 124 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 N+L A+ +R EWA+AW DISTG F + R+ +++ R+ P E++ SEK Sbjct: 125 EARRHNFLCALGNVRDEWALAWTDISTGAFHVMPLGQARIGAELARLAPSEVLVSEK--V 182 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAIS 265 + + LG A FD +E R+ + + T+ FGSFS+ E + A + Sbjct: 183 DETLRDVLGDLGIEATVLGAASFDSGAAEQRLCSTFAVQTLAGFGSFSRAELSGMGALVD 242 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y+ TQ P + P +E + ID+A R NLE+ +SG R SLL ID ++T Sbjct: 243 YLDITQKGQLPLLQTPRQEAGARLMQIDAATRRNLELTSAMSGGRSGSLLAAIDRTVTSG 302 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 G RL R++SP D I RLD++ + ++ + ++++L+ PDV R+LSRL + R Sbjct: 303 GARLLERRVSSPSRDLAVIEERLDAVRWGVEGS-FSDALRELLRRVPDVERALSRLGLDR 361 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPT 445 G P+D+ +R + I +LP LR + + L LE L + L + P Sbjct: 362 GGPRDLTAVRSALTQAQTICERLDGVELPALLRRSRDALSGHDALLE-VLDAALIVEPPL 420 Query: 446 FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEV 505 DGGF+ G D +LD+ R+LRD+ + +IA +Q +YAEET I +LKIKHNN LGYFIEV Sbjct: 421 RVSDGGFVAQGYDEALDQARTLRDEGRGVIARMQGEYAEETGISSLKIKHNNVLGYFIEV 480 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEIL 565 T++ A + DRFIHRQT +N RFTT EL +LE RI NA A IE ++ L Sbjct: 481 TATHADKMHA---RSDRFIHRQTTANQVRFTTTELSELETRILNAGAEAAAIEKRLYDTL 537 Query: 566 SNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKT 625 + I++++ L + +A ID+++ LA LA+++++C P +D+S F ++ GRHP+VE Sbjct: 538 RHEILDRAGVLAEVAFALAEIDLALGLAELARQRDWCLPKVDDSRAFDIEAGRHPVVEAA 597 Query: 626 LKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPA 685 L Q++ +PFIANDC LS D S +L LTGPNM GKST+LRQNALI ++AQ+GSYVPA Sbjct: 598 L-QKAGEPFIANDCALSAEGDAASVRL--LTGPNMAGKSTYLRQNALIALLAQIGSYVPA 654 Query: 686 SYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATL 745 AHIG+V ++FSRVG++D+LA GRSTFMVEM+ETA+ILNQA +++ VILDEIGRGTAT Sbjct: 655 RSAHIGVVSQIFSRVGASDDLARGRSTFMVEMVETAAILNQADDRALVILDEIGRGTATY 714 Query: 746 DGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKV 805 DGLSIAWAT+E+LHE NR RGL ATH+HELT L+ L NAT+ V + + +IFLH+V Sbjct: 715 DGLSIAWATLEHLHEVNRVRGLFATHYHELTVLAGKLPGVKNATVAVKEWDGDVIFLHEV 774 Query: 806 IPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK------DMRLYYPEIQT 859 G AD SYG+QV +LAGLP VI+RA D+L+ EK D+ L+ +T Sbjct: 775 HDGAADRSYGVQVAQLAGLPKAVITRARDVLEALEKGERERASPKALIDDLPLFSAAAKT 834 Query: 860 KESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + + EK+ + DEMSP AL+ LY +KA Sbjct: 835 PAPAVS-RETPSAVEEKLAAITPDEMSPREALQMLYDLKA 873 >gi|182678247|ref|YP_001832393.1| DNA mismatch repair protein MutS [Beijerinckia indica subsp. indica ATCC 9039] gi|182634130|gb|ACB94904.1| DNA mismatch repair protein MutS [Beijerinckia indica subsp. indica ATCC 9039] Length = 919 Score = 800 bits (2065), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/917 (46%), Positives = 604/917 (65%), Gaps = 35/917 (3%) Query: 6 SSPQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRC 65 ++PQK + + + K+S PMM QY EIK+ +PD L+FYRMGDFYELFF+DA A+ Sbjct: 7 ATPQK---QDLSAQPAAKTS-PMMAQYGEIKAAHPDVLLFYRMGDFYELFFEDAEQAAAA 62 Query: 66 LGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSL 125 L I LTKRG+HLG+DIPMCGVPV A+ Y+ +LI G ++A+CEQ+E P EA+KRG KS+ Sbjct: 63 LNIVLTKRGRHLGEDIPMCGVPVERADDYLARLIAKGFKVAVCEQVEDPAEARKRGGKSV 122 Query: 126 VRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTE------------WAIAWIDISTG 173 V+R VVRLVTPGTLTE+ LL+P SN L+AV + +A +DISTG Sbjct: 123 VKRAVVRLVTPGTLTEEALLNPRRSNCLVAVVPSVLPGGSHKSGLDDGLFGLAAVDISTG 182 Query: 174 IFKISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQP--NVFFDHS 231 F++ L +++ RI+P EII + SLF G AV P + D + Sbjct: 183 TFQVMEVVRPFLGAELARIEPAEIIAPDALCQ----SSLFAQAGAGAVVTPLGSRLDDEA 238 Query: 232 ISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLF 291 +E RI ++Y + T+D +F++ EK AAAAA+ Y+++TQ +P + P R + + Sbjct: 239 SAERRITNFYGLATLDGLAAFTRAEKLAAAAALFYVERTQCGVRPALATPGRLARAAHME 298 Query: 292 IDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSI 351 ID+A R+NLE+ +TL+G RE SL ID ++T AGGRL +ER+ +PLTD I RL ++ Sbjct: 299 IDAATRANLELTQTLAGRREGSLADVIDKTVTAAGGRLLSERLVAPLTDPQAIGARLATL 358 Query: 352 NFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI-LNLFLK 410 +F I+ L + +Q ILK++PD+ R+LSR+ +GRG P+D+A +RDG + I L Sbjct: 359 DFLIEETRLADDLQSILKTAPDLARALSRIGLGRGGPRDLASLRDGFSAAQRIGEKLDAV 418 Query: 411 NDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQ 470 LP EL A + + +L K L ++L+D++P +RDG F+R G D LD+ R+LRD+ Sbjct: 419 EVLPRELTEAAKACLAIDPALVKDLRAVLADNVPLHRRDGNFIRPGYDDELDQQRALRDE 478 Query: 471 SKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMS 530 S+++IA+LQ +Y E + + LK+KHNN LG+F+E+ + L K F HRQTM+ Sbjct: 479 SRQVIAALQARYCELAETRQLKVKHNNFLGFFLELPQAQGEKLLHPPFDKI-FNHRQTMA 537 Query: 531 NLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISI 590 + RF+T EL +LE +I+ A +AL E + F+ L+ I+EQ E++ + +A ID+++ Sbjct: 538 DAMRFSTAELAELEAKISGAAEAALARENDIFDRLAANILEQGETIREGAAGLARIDVAL 597 Query: 591 ALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKN-- 648 ALA+LA+ ++ RP ID+S F V+ GRHP+VE LK Q KPFIAN C L+ D+ Sbjct: 598 ALALLARRNSWTRPRIDSSLAFEVEAGRHPVVEMALKAQG-KPFIANRCGLTALPDQQMA 656 Query: 649 --SGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNL 706 +G++ ++TGPNMGGKST+LRQNALI I+AQMGSYVPA+ AHIGIVD+LFSRVG+AD+L Sbjct: 657 GEAGRIAVVTGPNMGGKSTYLRQNALIAILAQMGSYVPAAKAHIGIVDRLFSRVGAADDL 716 Query: 707 ASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRG 766 A GRSTFMVEM+ETA+ILNQA+ SFVILDEIGRGTAT DGL+IA A +E+LHE NR R Sbjct: 717 ARGRSTFMVEMVETAAILNQASPHSFVILDEIGRGTATFDGLAIAVAVVEHLHEVNRART 776 Query: 767 LLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPN 826 L ATHF E+T L+K L R N T++V + ++FLH+++ G ADHS+GIQV KLAGLP Sbjct: 777 LFATHFGEVTALAKRLPRLLNLTVRVVEGKSDLVFLHEIVEGTADHSHGIQVAKLAGLPK 836 Query: 827 TVISRAYDILKTFEKLYHHNQKDMRLY-----YPEIQTKESKNNLSKNDKLFVEKIKCLN 881 VI+RA +L EK Q + RL + I ++ N + +E + L+ Sbjct: 837 PVIARAKHLLTELEKGERRAQAE-RLVADLPLFAGIDAPDTANEELPPARALIEALDALD 895 Query: 882 LDEMSPLTALKTLYAVK 898 D++SP A++ LY +K Sbjct: 896 PDQLSPREAMEALYRLK 912 >gi|86136767|ref|ZP_01055345.1| DNA mismatch repair protein [Roseobacter sp. MED193] gi|85826091|gb|EAQ46288.1| DNA mismatch repair protein [Roseobacter sp. MED193] Length = 872 Score = 798 bits (2062), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/890 (46%), Positives = 578/890 (64%), Gaps = 41/890 (4%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY++IK+ PD+L+FYRMGDFYE+FFDDA+ A+ L I LTKRGKH +DIPMCGVP Sbjct: 1 MMAQYLDIKAQYPDALLFYRMGDFYEMFFDDAINAAEALDIALTKRGKHNDQDIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A Y+ LI+ G R+A+ EQ+E+P EAKKRG KS+V+R+VVRLVTPGTLTED LL Sbjct: 61 FHAAEGYLLTLIRKGFRVAVGEQLETPAEAKKRGGKSVVKRDVVRLVTPGTLTEDSLLEA 120 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHA 207 N+L++ +++R + A+AW DISTG F + + RL ++ R+ P E+I ++ + + Sbjct: 121 RRHNFLVSYSQLRDDSALAWADISTGAFHVMPISQVRLSPELARLAPSELIVADGPIFES 180 Query: 208 ------EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 EYK LG + FD + +E RI + + +D FGSFS+ E +A Sbjct: 181 TSSLAQEYKIPLTPLGKAS-------FDSTAAEKRICSLFGVNALDGFGSFSRAEVSAMG 233 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 A I Y++ TQ P + P +E + ID++ R++LE+ R+LSG+R SLL ID + Sbjct: 234 ALIDYLEITQKGKLPLLQKPVQEAEDRVVQIDASTRASLELTRSLSGARAGSLLSVIDRT 293 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +T G RL +R++SP + IN RL +++F ++ L ++ L+ +PD+ R+LSRL Sbjct: 294 VTPGGARLLEQRLSSPSRNLDVINARLAALDFVVERDQLCEELRDALRKTPDLDRALSRL 353 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 + RG P+D+A IR+G+ I + DLP + A L L+ ++++++ Sbjct: 354 ALDRGGPRDLAAIRNGLAQADAIASRNASEDLPPLVTAATADLTGFDALLDLLDAALVAE 413 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 P RDGGF+ G D LDE R+LRD+ + +IA +Q Y+ T I +LKIKHNN LGY Sbjct: 414 P-PLLARDGGFIAAGYDEELDEARTLRDEGRSVIAGMQQDYSAHTGITSLKIKHNNVLGY 472 Query: 502 FIEVTSSSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 FIE T++ A +L L K +IHRQT +N RFTT+EL ++E RI N+ N AL IE Sbjct: 473 FIETTATHADKMLSPPLSEK--YIHRQTTANQVRFTTVELSEIETRILNSGNRALEIEKR 530 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 + LS AI++Q+ L+ A++ +A +D+ ALA LA+ +N+ RP++D S F + GRHP Sbjct: 531 LYSELSGAILDQAARLNAAARGLAEMDLLTALADLARGENWTRPLVDASRAFAITGGRHP 590 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE+ L+QQ + F+ANDCDLS + +WLLTGPNM GKSTFLRQNALI ++AQMG Sbjct: 591 VVERALRQQGGERFVANDCDLST---SSGAAIWLLTGPNMAGKSTFLRQNALIALLAQMG 647 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 SYVPA AHIG+V +LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA +++ VILDEIGR Sbjct: 648 SYVPAESAHIGLVSQLFSRVGASDDLARGRSTFMVEMVETAAILNQADDRALVILDEIGR 707 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DGLSIAWAT+E+LHE N+ R L ATH+HELT LS L NAT+ V + +I Sbjct: 708 GTATYDGLSIAWATLEHLHEVNQSRALFATHYHELTQLSNKLTGVDNATVSVKEWEGEVI 767 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ------KDMRLY- 853 FLH+V G AD SYG+QV +LAGLP +V++RA D+L E+ D+ L+ Sbjct: 768 FLHEVKKGAADRSYGVQVAQLAGLPASVVARARDVLDLLEQGSREGSGAKIQIDDLPLFA 827 Query: 854 -----YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P++QT S + E +K L+ DE+SP AL+ LY +K Sbjct: 828 AAPPPQPKVQTAPSPVD---------ELLKDLHPDELSPREALEALYRLK 868 >gi|170744569|ref|YP_001773224.1| DNA mismatch repair protein MutS [Methylobacterium sp. 4-46] gi|168198843|gb|ACA20790.1| DNA mismatch repair protein MutS [Methylobacterium sp. 4-46] Length = 962 Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/899 (47%), Positives = 583/899 (64%), Gaps = 26/899 (2%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 ++PMM QYIEIKS NP L+FYRMGDFYELFF+DA +ASR LGI LT+RGKH G DIPMC Sbjct: 62 ASPMMAQYIEIKSANPGLLLFYRMGDFYELFFEDAEIASRALGIVLTRRGKHAGADIPMC 121 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP+ A+ Y+Q+LI +GHR+A+CEQ E P EAKKRG KS+VRR VVRLVTPGT+TE++L Sbjct: 122 GVPIDRADDYLQRLIALGHRVAVCEQTEDPAEAKKRGAKSVVRREVVRLVTPGTITEERL 181 Query: 145 LSPTDSNYLMAVARIR---TEW--AIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 L P +N L+A+AR R T W IA +DISTG F +S + L +++ R+DPREI+ Sbjct: 182 LDPARANLLVALARRRASETGWTYGIAAVDISTGRFTLSEVDGAGLAAELARLDPREIVV 241 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 +E + + L+ D + +E + + + + T+D FG+F + E A Sbjct: 242 AEAIHADPDLARLWRDTSASVTPLGRGEADPASAERALREQFGVATLDGFGAFGRAEVAA 301 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A + YI +TQ+ K +G P R TL ID+A R+NLE+ RTLSG R SLL ID Sbjct: 302 AGTVLHYIARTQLGAKVPLGPPARHAAGGTLLIDAATRANLELTRTLSGERAGSLLAAID 361 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 ++ AG RL AER+ASP TD I R D++ F + L ++ L +PD+ R+LS Sbjct: 362 RTVGAAGARLLAERLASPSTDLALIRRRQDAVAFLVAEGGLRAELRADLARAPDMARALS 421 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILN-LFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 R+ +GR P+D+A +RDG+ + +I L LP E+ A L + L +TL Sbjct: 422 RVGVGRAGPRDLAALRDGLDAARSIATRLAGAGALPAEIGKAARLLASVGDGLVETLQGA 481 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 L+DDLP KRDG F+R+G LDE R+L+ S+R +A LQ +YAEET + L+IKHNN Sbjct: 482 LADDLPLSKRDGNFVREGHSPELDEARALQSDSRRFVAGLQTRYAEETGCRTLRIKHNNL 541 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 LG+FIEV + L KD + F+HRQTM + RFT++EL +LE+RI NA L +E Sbjct: 542 LGFFIEVPQAVGETLLKD-PWRGTFVHRQTMVDAMRFTSVELGELESRIANAAGRGLALE 600 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 L +FE L+ A++ ++E++ A+ +A +D++ + A LA E + RP++D S F V+ R Sbjct: 601 LAAFEALAAAVMGRAEAITAAATALAALDVAASQAELAVELGWVRPVLDESLTFRVEGAR 660 Query: 619 HPIVEKTLKQQSSKPFIANDCDLS---------------CPNDKNSGKLWLLTGPNMGGK 663 HP+VE L+Q + +PFIAN CDLS + + +G++ ++TGPNMGGK Sbjct: 661 HPVVEAALRQ-AGEPFIANSCDLSGERAGPGREAGSGREAGSGREAGRILVVTGPNMGGK 719 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 STFLRQNALI ++AQMG++VPA AH+G+VD+LFSRVG+AD+LA G STFMVEM+ETA+I Sbjct: 720 STFLRQNALIAVLAQMGAFVPARAAHLGLVDRLFSRVGAADDLARGHSTFMVEMVETAAI 779 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLK 783 LNQAT +S V+LDEIGRGTAT DGLSIAWA +E+LHE CR L ATHFHELT L+K L+ Sbjct: 780 LNQATRRSLVVLDEIGRGTATFDGLSIAWACLEHLHEVTGCRALFATHFHELTGLAKRLE 839 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY 843 R NATL+V++ ++FLH+V+PG AD SYG+QV +LAGLP +VI+RA IL EK Sbjct: 840 RLSNATLKVTEWEGDVVFLHEVVPGAADRSYGLQVARLAGLPASVIARAKVILADLEKGE 899 Query: 844 HHNQKDMRLYYP---EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + P + + + + L+ D ++P AL LY +KA Sbjct: 900 GGRGRRPPAELPLFSALPPAPPAPPPAPKADPLRDLLDSLDPDGLTPREALDALYRLKA 958 >gi|300024975|ref|YP_003757586.1| DNA mismatch repair protein MutS [Hyphomicrobium denitrificans ATCC 51888] gi|299526796|gb|ADJ25265.1| DNA mismatch repair protein MutS [Hyphomicrobium denitrificans ATCC 51888] Length = 946 Score = 797 bits (2058), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/903 (45%), Positives = 573/903 (63%), Gaps = 35/903 (3%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP M QY+EIK+ NP SL++YRMGDFYELFF+DA+ AS L I LTKRGKH G+DIPMCG Sbjct: 40 TPSMAQYLEIKAANPSSLLWYRMGDFYELFFEDAVAASEALSIVLTKRGKHQGQDIPMCG 99 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH A+ Y+Q+LIK G+R+A+CEQ+E P EA+KRG K++V+R+VVRLVTPGT+TE+ LL Sbjct: 100 VPVHRADEYLQRLIKKGYRVAVCEQLEDPAEARKRGAKAVVKRDVVRLVTPGTVTEEALL 159 Query: 146 SPTDSNYLMAV--------------ARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMR 191 NYL AV AR+ A+A +DISTG F++ L+ +++R Sbjct: 160 DAKARNYLTAVYCETPHEIGTTDADARL----ALASLDISTGEFEVGDVAGSDLVGELIR 215 Query: 192 IDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS 251 + P E+I ++ L + E G P +F+ + + + FG+ Sbjct: 216 LAPSEVIVADGLLGDQNFVRAVEYAGGKVTPIPVAYFNSGAGGRDLKACLGVADLSAFGA 275 Query: 252 FSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 FS E A AA + Y+ TQM KP I P R+ + LFID+A+R++LE++R SG + Sbjct: 276 FSGSELAAIAAVLKYVDLTQMGRKPLIN-PPRKTAGARLFIDAASRASLELVRAASGEKS 334 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 +LL +D ++TGAG R R++SPLTD I RLD++ + + + L++ ++ L+S+ Sbjct: 335 STLLAAMDRTVTGAGSRELQARLSSPLTDPAAIEARLDAVAYLLNDRRLLDELRATLRSA 394 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN----DLPEELRGAVEKLKKL 427 PD+ R+L RL GRG P+D+A +RD I L ++ LP +L+ +L ++ Sbjct: 395 PDLARALPRLGFGRGGPRDLAAVRDAIGVARRATALLEQSAQPLGLPADLKSVCVRLAQI 454 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 P L L S L ++ P +RDG F+R G LD R+LRD S++++A + +Y EET Sbjct: 455 PADLGTALESALVEEPPLLRRDGAFVRAGFSGDLDAARALRDDSRKVMAEHEARYIEETG 514 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 +K L+++HNN LG+FIEVT +A L S +RF HRQTM+N RF T EL++ E I Sbjct: 515 VKTLRVRHNNILGFFIEVTQLNAKPLLSPPLS-ERFRHRQTMANAVRFATAELLETEGLI 573 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 +A+ AL +E E F LS I + L A+ +A +D+ ALA L+ EQ+Y RP ID Sbjct: 574 ASASERALNLEQEIFTDLSAHIGAAAGDLGAAAAALAELDVFAALAQLSLEQDYARPQID 633 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDC-----DLSCPNDKN---SGKLWLLTGPN 659 S F ++ GRHP+V++ L + + FI NDC L P+D ++WL+TGPN Sbjct: 634 ASMAFEIRGGRHPVVQQALAKSGAPAFIENDCVLGSAALETPSDAARTADARIWLVTGPN 693 Query: 660 MGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIE 719 M GKSTFLRQNALI +MAQMGSYVPA AHIG+VD+LFSRVG++D+LA GRSTFMVEM+E Sbjct: 694 MAGKSTFLRQNALITVMAQMGSYVPARSAHIGVVDRLFSRVGASDDLARGRSTFMVEMVE 753 Query: 720 TASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLS 779 TA+ILNQA+ +S VILDEIGRGTAT DGLSIAWAT+EYLH + R L ATH+HELT L+ Sbjct: 754 TAAILNQASERSLVILDEIGRGTATFDGLSIAWATVEYLHGVTKARALFATHYHELTALA 813 Query: 780 KSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF 839 + L N T+ V++ + I+FLHKV G AD SYGIQV KLAGLP+ V+ RA ++L Sbjct: 814 RKLDGIANVTMDVTEWRDTIVFLHKVKAGAADRSYGIQVAKLAGLPSAVVVRAREVLDRL 873 Query: 840 EKLYHHNQ--KDMRLYYPEIQTKESKNNLSKNDKLFVEK-IKCLNLDEMSPLTALKTLYA 896 EK + D P K+ L++ VEK ++ ++ DE+SP AL+ +Y Sbjct: 874 EKADRRPRTGDDGLEDLPLFSAVRPKSGLNERAPSAVEKMLRAMHPDELSPKAALEKIYE 933 Query: 897 VKA 899 +KA Sbjct: 934 LKA 936 >gi|56694939|ref|YP_165284.1| DNA mismatch repair protein MutS [Ruegeria pomeroyi DSS-3] gi|81676440|sp|Q5LWH0|MUTS_SILPO RecName: Full=DNA mismatch repair protein mutS gi|56676676|gb|AAV93342.1| DNA mismatch repair protein MutS [Ruegeria pomeroyi DSS-3] Length = 877 Score = 793 bits (2049), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/890 (47%), Positives = 575/890 (64%), Gaps = 30/890 (3%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPMM QY+EIK D+L+FYRMGDFYE+FFDDA+ A+ L I LTKRGKH G+DI Sbjct: 1 MTTVTPMMAQYLEIKEAYADALLFYRMGDFYEMFFDDAVAAAEALDIALTKRGKHEGEDI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVPVH A Y+ LI+ G R+A+CEQ+ESP EAKKRG+KS+VRR+VVRLVTPGTLTE Sbjct: 61 PMCGVPVHAAEGYLLTLIRKGFRVAVCEQMESPAEAKKRGSKSVVRRDVVRLVTPGTLTE 120 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREI---- 197 D LL N+L+A A +R+ A+AW DISTG F + RL ++ R+ P E+ Sbjct: 121 DALLEARRHNFLVAYAEVRSGAALAWADISTGDFHVMPVTRPRLSPELARLAPSELLVVD 180 Query: 198 --IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQV 255 +F + +++ LG + FD +E R+ + Y + +++ FG+F++ Sbjct: 181 EPVFQQLRPLADDHRIPLTPLGKAS-------FDSMAAEKRLCELYKVGSLEGFGTFARA 233 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 E +A A I Y+ TQ P + P +E + ID+A R NLE+ R+LSG R SLL Sbjct: 234 ELSAMGALIDYLDITQKGKLPLLQPPVQEAEDRVMQIDAATRRNLELTRSLSGERGGSLL 293 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 ID ++T G RL +R+ SP + I+ RL +++F I + L ++ L+ +PD+ Sbjct: 294 SVIDRTVTPGGARLLEQRLGSPSRNLDVIHARLSALDFCIDHSTLAADLRAALRKTPDLD 353 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R+LSRL + RG P+D+A IR+G+ I L +LP + GA L + L L Sbjct: 354 RALSRLALDRGGPRDLAAIRNGLGQAEAIAALCDGLELPGLIAGACADLNGFDELL-GLL 412 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + L + P RDGGF+ G D+ LDE R LRD+ + +IA +Q KYAE T I +LKIKH Sbjct: 413 DTALVAEPPLLARDGGFIAPGYDSDLDEARELRDKGRGVIAGMQQKYAEHTGIASLKIKH 472 Query: 496 NNNLGYFIEVTSS-SASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 NN LGYFIE T++ +A +L L + +IHRQT +N RFTT+EL +LE RI NA N A Sbjct: 473 NNVLGYFIETTATHAAKMLNPPL--SETYIHRQTTANQVRFTTVELSELETRILNAGNHA 530 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L IE + LS A++EQ+ L+ A++ +A +D++ ALA LA+ +N+CRP +D S F + Sbjct: 531 LEIEKRLYSSLSGAVLEQAARLNIAARGLAELDLATALADLARAENWCRPSVDPSRAFAI 590 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 + GRHP+VE L++Q PF+ANDCDLS DK + + LLTGPNM GKST+LRQNALI Sbjct: 591 EGGRHPVVEHALRRQGGDPFVANDCDLSA--DKGAA-IRLLTGPNMAGKSTYLRQNALIT 647 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++AQ+GSYVPA AHIG+V +LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA + + VI Sbjct: 648 LLAQIGSYVPADSAHIGVVSQLFSRVGASDDLARGRSTFMVEMVETAAILNQADDHALVI 707 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDEIGRGTAT DGLSIAWAT+E+LH TNRCR L ATH+HELT L+ +L N T+ V + Sbjct: 708 LDEIGRGTATYDGLSIAWATLEHLHATNRCRALFATHYHELTALAATLDGVENLTVAVKE 767 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK------ 848 +IFLH+V G AD SYG+QV +LAGLP +V++RA +L EK K Sbjct: 768 WEGEVIFLHEVRKGAADRSYGVQVAQLAGLPPSVVARARVVLDQLEKSEREGGKQKALID 827 Query: 849 DMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 D+ L+ S D + E ++ DE++P AL+ LY +K Sbjct: 828 DLPLFSAAPPLPPPAPKTSPADAMLKE----IHPDELTPRQALEMLYKLK 873 >gi|159046006|ref|YP_001534800.1| DNA mismatch repair protein MutS [Dinoroseobacter shibae DFL 12] gi|189030716|sp|A8LPD4|MUTS_DINSH RecName: Full=DNA mismatch repair protein mutS gi|157913766|gb|ABV95199.1| DNA mismatch repair protein MutS [Dinoroseobacter shibae DFL 12] Length = 877 Score = 793 bits (2047), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/819 (48%), Positives = 545/819 (66%), Gaps = 13/819 (1%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K+ TPMM QY+EIK + D+L+FYRMGDFYE+FFDDA+ A+ L I LTKRGKH DIP Sbjct: 4 KTVTPMMAQYLEIKQDHADALLFYRMGDFYEMFFDDAVEAAAALDIALTKRGKHDDADIP 63 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVPVH A Y+ LI+ G R+A+CEQ+E P EAKKRG+KS+VRR VVRLVTPGTLTE Sbjct: 64 MCGVPVHAAEGYLLTLIRKGFRVAVCEQMEDPAEAKKRGSKSVVRREVVRLVTPGTLTEA 123 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK 202 LL NYL A A++R + A+AW+DISTG F++ RL D+ R+ PRE++ +E Sbjct: 124 SLLEARRHNYLAAFAKVRDDSALAWVDISTGEFRVMACPAARLSVDLARLAPREVLLAEG 183 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 + +SL E A FD + + R+ Y + ++ FGSF + + +A A Sbjct: 184 N----DLRSLVEEHEAAATELGRASFDSTAAVDRLCRLYGVADLEAFGSFERADLSAMGA 239 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 + Y++ TQ P + P +E Q L ID+A R NLE+ ++LSG RE +LL ID ++ Sbjct: 240 IVGYLELTQKGKLPLLRKPVKERAQHGLQIDAATRRNLELTQSLSGGREGALLTVIDRTV 299 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G RL A R+ASP D + I TR + + + ++ P +++ ++ L+ PD+ R+LSRL Sbjct: 300 TAQGARLLARRLASPSADLSIIRTRHEGVRYALEAPEILDTVRTALRQVPDMDRALSRLA 359 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 + RG P+D+A IR+G+ + + LP + + +L L L + Sbjct: 360 LDRGGPRDLAAIRNGLAQAATLAEALPDDALPPLWAQSKSRFFG-HDALRDLLEKALIAE 418 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P RDGGF+ G + LDE R LRD+ + +IA +Q +YAE T I +LK+KHNN LGYF Sbjct: 419 PPLLTRDGGFVASGYNVDLDEARQLRDEGRGVIAGMQAEYAEATGIASLKVKHNNVLGYF 478 Query: 503 IEVTSSSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 IE T++ A +L L DRFIHRQT +N RFTT+EL ++E RI NA AL +E Sbjct: 479 IETTATHADKMLSPPL--SDRFIHRQTTANAVRFTTVELSEMETRILNAGGRALALEKSI 536 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 FE L A+I + L + ++ +A +D+ ALA+LA+++++C P +D+S F + GRHP+ Sbjct: 537 FEELRQAVIVAAAELSDCARALAELDVVTALAVLARDEDWCAPKVDDSRAFEISGGRHPV 596 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE L+ S PFI NDCDLS + + +WLLTGPNM GKSTFLRQNALI I+AQMGS Sbjct: 597 VEAALRA-SGTPFIRNDCDLS----EGAAPIWLLTGPNMAGKSTFLRQNALIAILAQMGS 651 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 YVPA+ A IG+V ++FSRVG++D+LA GRSTFMVEM+ETA+ILNQA +++ VILDEIGRG Sbjct: 652 YVPATAARIGLVAQVFSRVGASDDLARGRSTFMVEMVETAAILNQAGDRALVILDEIGRG 711 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 TAT DGLSIAWAT+E+LH NRCR L ATH+HE+T L+ L NAT+ V + + +IF Sbjct: 712 TATYDGLSIAWATLEHLHGVNRCRALFATHYHEMTGLAAQLSGVENATVAVKEHDGDVIF 771 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 LH+V G AD SYG+QV KLAGLP +V++RA ++LKT E Sbjct: 772 LHEVRRGAADRSYGVQVAKLAGLPPSVVARAREVLKTLE 810 >gi|254486651|ref|ZP_05099856.1| DNA mismatch repair protein MutS [Roseobacter sp. GAI101] gi|214043520|gb|EEB84158.1| DNA mismatch repair protein MutS [Roseobacter sp. GAI101] Length = 898 Score = 792 bits (2045), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/881 (48%), Positives = 572/881 (64%), Gaps = 19/881 (2%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY+E+K+ ++L+FYRMGDFYE+FFDDA+ A+ L I LTKRGKH G+DIPMCG Sbjct: 24 TPMMAQYLELKAQYAEALLFYRMGDFYEMFFDDAVAAAEALDIALTKRGKHGGEDIPMCG 83 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ LI+ G R+A+CEQ+ESP EAKKRG+KS+VRR+VVRLVTPGTLTE+ LL Sbjct: 84 VPFHAAEGYLLTLIRKGFRVAVCEQMESPAEAKKRGHKSVVRRDVVRLVTPGTLTEESLL 143 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 NYL A A +R + A+AW+DISTG F + RL ++ R+ P E+I S+ + Sbjct: 144 EARRHNYLAAFAEVRDQHALAWVDISTGAFHVMPLTLARLGPELARLSPSELIVSDAK-- 201 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAIS 265 AE L FD + +E I D + I ++D FGSFS+ + +A A I Sbjct: 202 EAELHGLVSDFDLSLTPLARSAFDSTSAEKSICDLFGIGSLDAFGSFSRADISAMGAIID 261 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y++ TQ P + P++E T+ ID+A R NLE+ L+G R +LL +D ++T Sbjct: 262 YLEITQKGKLPLLRPPQKEAESRTVQIDAATRRNLELTHALTGGRAGTLLSVMDKTVTAG 321 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 G RL RI+SP ++ RLD+I+F +NP ++ L++ PD+ R+LSRL + R Sbjct: 322 GARLLERRISSPSRVLDTVHARLDAISFAHENPRFREDFRQHLRNVPDLDRALSRLSLDR 381 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPT 445 G P+D+A IR+G+ ++ + DLP+ L AV+ L ++L L L + P Sbjct: 382 GGPRDLAAIRNGLTEAGHLADKADSADLPDLLSNAVKGLHG-HEALIDLLDEALIAEPPL 440 Query: 446 FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEV 505 RDGGF+ G DA LDE R+LRD+ + +IA +Q ++ T I LKIKHNN LGYFIEV Sbjct: 441 LARDGGFIAQGYDADLDEVRTLRDEGRSVIAQMQQEFVTLTGISALKIKHNNVLGYFIEV 500 Query: 506 TSSSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEI 564 TS+ A +L L K FIHRQT +N RFTT+EL ++E +I NA N AL IE +E Sbjct: 501 TSTHAEKMLSAPLSEK--FIHRQTTANQVRFTTVELSEMETKILNAGNHALEIEKRLYET 558 Query: 565 LSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEK 624 L AII+QS + AS +A ID++ ALA +A+ +N+ +P +DNS F ++ GRHP+VE+ Sbjct: 559 LKRAIIDQSGPIGVASAGLAEIDLATALAEIAQTENWVKPRVDNSRAFDIQGGRHPVVER 618 Query: 625 TLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684 L QQS FIANDC LS D ++ +WLLTGPNM GKSTFLRQNALI +MAQMGS+VP Sbjct: 619 ALAQQSGAAFIANDCALSA--DADNAHIWLLTGPNMAGKSTFLRQNALIALMAQMGSFVP 676 Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744 AS AHIG++ ++FSRVG++D+LA GRSTFMVEM+ETA+ILNQA +++ VILDEIGRGTAT Sbjct: 677 ASGAHIGLISQIFSRVGASDDLARGRSTFMVEMVETAAILNQADDRALVILDEIGRGTAT 736 Query: 745 LDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHK 804 DGLSIAWAT+E+LH+ NR R L ATH+HE+T LS L NAT+ V + +IFLH+ Sbjct: 737 YDGLSIAWATLEHLHDVNRSRALFATHYHEMTALSTKLDGVENATVTVKEWEGEVIFLHE 796 Query: 805 VIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN---QK----DMRLYYPEI 857 V G AD SYG+QV +LAGLP +VI+RA +L+ EK QK D+ L+ Sbjct: 797 VKKGAADRSYGVQVAQLAGLPPSVIARARVVLEALEKGEREGGATQKTLIDDLPLFAVTP 856 Query: 858 QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 SK + + + DE++P AL LY +K Sbjct: 857 TPPPQPQKTSKVEA----TLAGIMPDELTPREALDLLYKLK 893 >gi|149912899|ref|ZP_01901433.1| DNA mismatch repair protein MutS, putative [Roseobacter sp. AzwK-3b] gi|149813305|gb|EDM73131.1| DNA mismatch repair protein MutS, putative [Roseobacter sp. AzwK-3b] Length = 869 Score = 791 bits (2043), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/815 (48%), Positives = 542/815 (66%), Gaps = 12/815 (1%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY+EIK+ P +L+FYRMGDFYELFFDDA+ A+ L I LTKRGKHLG+DI MCGVP Sbjct: 1 MMAQYLEIKAEYPGALLFYRMGDFYELFFDDAVAAAEALDIALTKRGKHLGEDIAMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 VH+A +Y+ LI+ G R+A+ EQ+ESP EAKKRG+KS+V+R VVRLVTPGTLTE+ LL Sbjct: 61 VHSAENYLLTLIRKGFRVAVGEQLESPEEAKKRGSKSVVKRGVVRLVTPGTLTEESLLEA 120 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHA 207 NYL + AR+R + A+AW+DISTG F + RL ++ R+ P E++ ++ + A Sbjct: 121 RRHNYLASFARVRGDGALAWVDISTGSFHVMPLTEVRLGPELARLAPSEVVLADGD--QA 178 Query: 208 EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYI 267 + + G FD + E R+ D +++ T++ +G F++ E A A + Y+ Sbjct: 179 DLGDIVTESGAAVTELGRAAFDSAGGEKRLCDLFDVGTLEAYGQFTRPEVAAMGAIVEYL 238 Query: 268 KKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGG 327 + TQ P + P+RE + ID+A R NLEI + L G R SLL +D ++T GG Sbjct: 239 EITQRGKLPLLRPPQREAQARVMQIDAATRRNLEITQALGGGRAGSLLSAVDRTVTAGGG 298 Query: 328 RLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGE 387 RL R++SP + RLD++ F ++ ++ L+ PD+ R+LSRL + RG Sbjct: 299 RLLERRLSSPSLVLEIVQDRLDAVGFAVEQRRFSEDLRAALRKVPDLDRALSRLALDRGG 358 Query: 388 PKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFK 447 P+D+A IR+G+ I ++ ++LP + AV L +S+ L L + P Sbjct: 359 PRDLAAIRNGLEQAGAIADMAEGHELPRLMAEAVTALSG-HESVLDLLEQALVAEPPMLV 417 Query: 448 RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTS 507 RDGGF+ G D LDE R LRD+ + +IA +Q +Y + T I++LKIKHNN LGYF+EVTS Sbjct: 418 RDGGFIAPGFDEELDEARQLRDEGRGVIAGMQAEYVDLTGIQSLKIKHNNVLGYFVEVTS 477 Query: 508 SSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILS 566 A +L L + F HRQT +N RFTT+ L ++E RI NA AL IE ++ L Sbjct: 478 VHADKMLSGPL--NETFKHRQTTANQVRFTTVPLSEMETRILNAGGRALEIEKRLYDSLK 535 Query: 567 NAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTL 626 AI+E S+++ A+ +A +D++ ALA LA+ +++ RP +D S ++ GRHP+VE+ L Sbjct: 536 AAILESSDAVSQAASALAELDLATALADLARGEDWTRPKVDASRALDIEAGRHPVVEQAL 595 Query: 627 KQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPAS 686 ++ S +PFIANDCDL +D +WLLTGPNM GKSTFLRQNALI ++AQ GS+VPA Sbjct: 596 RK-SGEPFIANDCDLGTAHD-----IWLLTGPNMAGKSTFLRQNALIALLAQAGSFVPAR 649 Query: 687 YAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLD 746 AHIG+V +LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA + + VILDEIGRGTAT D Sbjct: 650 AAHIGMVSQLFSRVGASDDLARGRSTFMVEMVETAAILNQADDHALVILDEIGRGTATYD 709 Query: 747 GLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVI 806 GLSIAWAT+E+LHE NRCR L ATH+HELT+LS L R NAT+ V + + +IFLH+V Sbjct: 710 GLSIAWATLEHLHEINRCRALFATHYHELTNLSDKLDRVDNATVSVKEHDGDVIFLHEVR 769 Query: 807 PGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 G AD SYG+QV KLAGLP TV++RA +L EK Sbjct: 770 RGAADRSYGVQVAKLAGLPETVVARARVVLDALEK 804 >gi|110677817|ref|YP_680824.1| DNA mismatch repair protein MutS [Roseobacter denitrificans OCh 114] gi|123172988|sp|Q16D05|MUTS_ROSDO RecName: Full=DNA mismatch repair protein mutS gi|109453933|gb|ABG30138.1| DNA mismatch repair protein MutS, putative [Roseobacter denitrificans OCh 114] Length = 878 Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/876 (47%), Positives = 567/876 (64%), Gaps = 9/876 (1%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY+++K+ D+L+FYRMGDFYE+FF+DA+ A+ L I LTKRGKH G DIPMCG Sbjct: 4 TPMMAQYLDLKAEYADALLFYRMGDFYEMFFEDAVAAAEALDIALTKRGKHDGADIPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH+A Y+ LI+ R+A+CEQ+ESP EAKKRG+KS+V+R+VVRLVTPGTLTE+ LL Sbjct: 64 VPVHSAEGYLLTLIRKRFRVAVCEQMESPAEAKKRGSKSVVKRDVVRLVTPGTLTEETLL 123 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 +NYL + A++R A+AW DISTG F + +L ++ R+ P E+I SE + Sbjct: 124 DARRNNYLTSFAQVRDAKALAWTDISTGAFHVMPLTALKLGPELARLAPSELICSES--A 181 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAIS 265 + + + E G FD + +E RI D + + T+D++GSF++ E A I Sbjct: 182 ENDLREVAEDFGIALTGLARAAFDSTSAEQRICDLFGVETLDSYGSFTRAEVAAMGGIIQ 241 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y+ TQ P + P+RE T+ ID+A R NLE+ + LSG R SLL ID +IT A Sbjct: 242 YLDITQKGKLPLLRPPQRETENRTIQIDAATRRNLELTQALSGGRAGSLLAVIDRTITAA 301 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 GGRL + RIASP D I RLD+++F + L ++ L+ PD+ R+LSRL + R Sbjct: 302 GGRLMSARIASPSRDLETITNRLDAVSFAQDHHDLCGALRDHLRKVPDLDRALSRLSLDR 361 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPT 445 G P+D+A IR+G+ + ++LP L A+ L + +++ L + L + P Sbjct: 362 GGPRDMAAIRNGLTQSAILFETLGSHELPPLLADALNDLSRHDNLIDR-LDATLVAEPPL 420 Query: 446 FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEV 505 RDGGF+ G DA LDE RSLRD+ + +IA +Q ++A T I +LKIKHNN LGYFIE Sbjct: 421 LARDGGFIATGFDAELDEARSLRDEGRSVIARMQQEFAALTGITSLKIKHNNVLGYFIET 480 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEIL 565 T++ A + S + FIHRQT +N RFTT+EL +LE +I NA AL IE +E L Sbjct: 481 TATHAEKMLSPPMS-ETFIHRQTTANQVRFTTVELSELETKILNAGGRALEIEKRLYETL 539 Query: 566 SNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKT 625 + I+ S + + +A +D++ ALA LA + RP +D+S F +++GRHP+VE Sbjct: 540 KSDILACSARIAQTASALAELDLTTALATLATTDGWVRPKVDDSRAFAIENGRHPVVENA 599 Query: 626 LKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPA 685 L+QQS PFIANDCDLS D + +++LLTGPNM GKST+LRQNA+I ++AQMGS+VPA Sbjct: 600 LRQQSGDPFIANDCDLSAEED--AAQIYLLTGPNMAGKSTYLRQNAIIALLAQMGSFVPA 657 Query: 686 SYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATL 745 S AHIG++ +LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA +++ VILDEIGRGTAT Sbjct: 658 SCAHIGLISQLFSRVGASDDLARGRSTFMVEMVETAAILNQADDRALVILDEIGRGTATY 717 Query: 746 DGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKV 805 DGLSIAWAT+E+LH+ N+ R L ATH+HE+T L+ L NAT+ V + +IFLH+V Sbjct: 718 DGLSIAWATLEHLHDVNKSRALFATHYHEMTALAGKLPGVENATVTVKEWEGEVIFLHEV 777 Query: 806 IPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN---QKDMRLYYPEIQTKES 862 G AD SYG+QV +LAGLP VISRA +L EK QK + P + Sbjct: 778 KMGAADRSYGVQVAQLAGLPPAVISRARAVLDMLEKGEREGGATQKTLIDDLPLFSVAPA 837 Query: 863 KNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ ++ DE++P AL+ LY +K Sbjct: 838 PAPAPAKTSDVEARLAEIHPDELTPKQALELLYQLK 873 >gi|83950764|ref|ZP_00959497.1| DNA mismatch repair protein [Roseovarius nubinhibens ISM] gi|83838663|gb|EAP77959.1| DNA mismatch repair protein [Roseovarius nubinhibens ISM] Length = 874 Score = 789 bits (2037), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/815 (48%), Positives = 543/815 (66%), Gaps = 11/815 (1%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM Q++E+K+ P++L+FYRMGDFYELFFDDA+ AS L I+LTKRGKHLG+DIPMCGVP Sbjct: 1 MMAQFLELKAGYPEALLFYRMGDFYELFFDDAVAASAALDISLTKRGKHLGEDIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 VH A Y+ LI+ G R+A+CEQ+E P EAKKRG+KS+V+R+VVRLVTPGTLTED LL Sbjct: 61 VHAAEGYLLTLIRKGFRVAVCEQMEDPAEAKKRGSKSVVKRDVVRLVTPGTLTEDSLLEA 120 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHA 207 N+L A A +R A+AW+DISTG F + RL ++ R+ P E+I ++ L+ Sbjct: 121 RRHNFLAAFANVRDTSALAWVDISTGAFHVMPLAPARLGPELARLAPAEVIVADG-LTR- 178 Query: 208 EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYI 267 + + E G FD + E R+ + ++D +G F++ E A A + Y+ Sbjct: 179 DMAEIIEESGASLSPLGAASFDSTGGEKRLCTLFGTASLDAYGQFTRPELAAMGALVDYL 238 Query: 268 KKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGG 327 TQ P + P++ + ID+A R NLE+ LSG R SLL ID ++T GG Sbjct: 239 DITQKGKLPLLQAPKQLSQGGAMQIDAATRRNLELTHALSGGRAGSLLSVIDRTVTAGGG 298 Query: 328 RLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGE 387 RL +R++SP D + +RLDS++F ++ + ++ +L+ PD+ R+LSRL + RG Sbjct: 299 RLLEQRLSSPSRDLQTVTSRLDSVSFALEQSRFSDQLRDMLRRIPDMDRALSRLGLDRGG 358 Query: 388 PKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFK 447 P+D+ IR+G+ I L +D+P ++ A+ +L + L+ S++++ P Sbjct: 359 PRDLTAIRNGLDHAAQIAALPRPDDMPRDISAALARLTGHDELLDLLDQSLVAEP-PLLA 417 Query: 448 RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTS 507 RDGGF+ G D LDE R LRD+ + +IA++Q +YAE T I +LK+KHNN LGYF+EVT+ Sbjct: 418 RDGGFIAPGFDEELDECRKLRDEGRSVIAAMQSEYAELTGIASLKVKHNNVLGYFVEVTA 477 Query: 508 SSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILS 566 + A +L + L F HRQT +N RFTT+ L ++E RI NA A+ IE ++ L Sbjct: 478 THADKMLSEPLNQT--FKHRQTTANQVRFTTVPLSEMETRILNAGGRAIEIEKRLYDTLK 535 Query: 567 NAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTL 626 AI+++ + +++ +A +D+ ALA LA+E ++CRP +D+S + GRHP+VE+ L Sbjct: 536 RAILDRYAQVSDSAAALAELDLHSALATLARELDWCRPKVDDSRALHITAGRHPVVEQAL 595 Query: 627 KQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPAS 686 + S PFIANDCDL D +WLLTGPNM GKSTFLRQNALI I+AQMGS+VPA+ Sbjct: 596 RAGSGAPFIANDCDLGGEAD-----IWLLTGPNMAGKSTFLRQNALIAILAQMGSFVPAA 650 Query: 687 YAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLD 746 AHIG+V ++FSRVG++D+LA GRSTFMVEM+ETA+ILNQA + + VILDEIGRGTAT D Sbjct: 651 SAHIGLVSQVFSRVGASDDLARGRSTFMVEMVETAAILNQADDHALVILDEIGRGTATYD 710 Query: 747 GLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVI 806 GLSIAWAT+E+LHE N R L ATH+HE+T LS L R NAT+ V + + +IFLH+V Sbjct: 711 GLSIAWATLEHLHEVNGARALFATHYHEMTRLSDRLARVDNATIAVKEHDGDVIFLHEVR 770 Query: 807 PGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 G AD SYG+QV KLAGLP TV+ RA +L+ EK Sbjct: 771 RGAADRSYGVQVAKLAGLPATVVERARVVLEALEK 805 >gi|83594870|ref|YP_428622.1| DNA mismatch repair protein MutS [Rhodospirillum rubrum ATCC 11170] gi|123525505|sp|Q2RNG0|MUTS_RHORT RecName: Full=DNA mismatch repair protein mutS gi|83577784|gb|ABC24335.1| DNA mismatch repair protein MutS [Rhodospirillum rubrum ATCC 11170] Length = 929 Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/884 (46%), Positives = 555/884 (62%), Gaps = 21/884 (2%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY+ +K+ +PD L+FYRMGDFYE+FF+DA+ A+ L I LTKRG+H G DIPMCG Sbjct: 52 TPMMAQYLAVKAAHPDCLLFYRMGDFYEMFFEDAVKAAETLDIALTKRGRHAGADIPMCG 111 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKK-RGNKSLVRRNVVRLVTPGTLTEDQL 144 VP+H+ Y+ +LI+ G ++AICEQ+E P EA++ RG K++VRR+V+R+VT GTLTED+L Sbjct: 112 VPIHSHEGYLSRLIRAGIKVAICEQMEDPAEARRQRGYKAVVRRDVIRVVTAGTLTEDEL 171 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 L NYL AV R+R +AW+D+STG + + R+ P E++ EK Sbjct: 172 LDARAHNYLAAVVRLRDAVGMAWVDVSTGDLVAQPLAEADIGPALARLAPGEVLMPEKLA 231 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 + + L P FD + R+ + + +D FG F + E A A I Sbjct: 232 GDPALREILAPLAGRISPLPASRFDSENARKRVEGLFGVKALDGFGGFGRAEVAAIGALI 291 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 Y++ TQ+ P + P R + + L ID A R NLE+ TL G R+ SLL ID ++TG Sbjct: 292 DYVELTQVGRLPRLSPPRRLSLGAILEIDGATRRNLELTETLGGGRKGSLLARIDCTVTG 351 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 AG RL AER+A+PLTD +I RLD + F + + ++ L+ PD+ R+LSRL +G Sbjct: 352 AGARLLAERLAAPLTDPAQIGARLDGVGFLVSAERVRGDLRDTLRGCPDIARALSRLSLG 411 Query: 385 RGEPKDIAVIRDGIRSGINILNLFLKN----DLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 RG P+D+A I + + S I L + + + P EL A+ L + L L L Sbjct: 412 RGGPRDLAAIGEAL-SRIPALRVLVVGAGLGEPPTELTAALIDLGS-HEGLVDLLGRALD 469 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 DLP RDGGF+R G DA LDE R+LRD+ +R+IA LQ +YA ET I LKIKHNN LG Sbjct: 470 ADLPLLARDGGFIRPGYDAGLDELRALRDEGRRLIAGLQARYASETAIPALKIKHNNVLG 529 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 YFIEV + A L + + F+HRQT+++ RFTT+EL +LE++I A + AL +E Sbjct: 530 YFIEVAAGRADKL---MAAGGPFLHRQTLASQVRFTTVELSELEDKIRGAADKALALEQA 586 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F L ++ + + A+ +A +D++ ALA LA + Y RP++DNST F + GRHP Sbjct: 587 LFATLCAEVLGCAADIARAANGLACLDVAAALADLAARERYARPVVDNSTAFRIHKGRHP 646 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE L Q+ F+ANDCDL+ P+ + LWLLTGPNM GKSTFLRQNALI ++AQMG Sbjct: 647 VVEAALADQAGPAFVANDCDLA-PDQR----LWLLTGPNMAGKSTFLRQNALIAVLAQMG 701 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA A IG++D+LFSRVG+AD+LA GRSTFMVEM+ETA+ILNQAT +S VILDEIGR Sbjct: 702 SFVPAESAEIGVIDRLFSRVGAADDLARGRSTFMVEMVETAAILNQATERSLVILDEIGR 761 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DGLSIAWAT+E LH+ RCR L ATH+HELT L+ L R TL++ + + ++ Sbjct: 762 GTATYDGLSIAWATVESLHDATRCRALFATHYHELTALASRLDRLSCHTLRIKEWKDQVV 821 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL-----YYP 855 FLH+V PG AD SYGI V KLAGLP VI+RA +L EK + RL + Sbjct: 822 FLHEVGPGAADRSYGIHVAKLAGLPAAVIARAEQVLAILEK-GDASSAATRLADDLPLFA 880 Query: 856 EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + + E + +N DEM+P AL LY +KA Sbjct: 881 AARPRAGLPTPPPGPHPLAEALNAINPDEMTPREALDALYRLKA 924 >gi|220926842|ref|YP_002502144.1| DNA mismatch repair protein MutS [Methylobacterium nodulans ORS 2060] gi|219951449|gb|ACL61841.1| DNA mismatch repair protein MutS [Methylobacterium nodulans ORS 2060] Length = 929 Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/888 (47%), Positives = 589/888 (66%), Gaps = 20/888 (2%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QYIEIK+ NP L+FYRMGDFYELFF+DA +ASR LGI LTKRGKH G DIPMCGVP Sbjct: 42 MMAQYIEIKAANPGLLLFYRMGDFYELFFEDAEVASRALGIVLTKRGKHGGADIPMCGVP 101 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 V A+ Y+Q+LI +GHR+A+CEQ E P EA+KRG+KS+VRR VVRLVTPGT+TE++LL P Sbjct: 102 VERADDYLQRLIALGHRVAVCEQTEDPAEARKRGSKSVVRREVVRLVTPGTITEERLLDP 161 Query: 148 TDSNYLMAVARI---RTEW--AIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK 202 +N L+A+AR + W +A +DISTG F +S + L ++I R++PREI+ +E Sbjct: 162 ARANLLLALARRRASESGWTYGLAAVDISTGRFTLSEIDGQGLPAEIARLEPREIVMAEA 221 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 + + L+ D + +E + + + + T+D FG+FS+ E AA Sbjct: 222 IHADPDLARLWRDTSAAVTPLGRGEADPASAERALKEQFGVATLDGFGAFSRTEIAAAGT 281 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 + YI +TQ+ + + P R+ +L ID+A R+NLE+ RTLSG R SLL ID ++ Sbjct: 282 VLHYIARTQLGARVPLSPPARQGAGGSLLIDAATRTNLELTRTLSGERAGSLLAAIDRTV 341 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 AG RL AER+A P TD I R D++ F + L ++ L +PD+ R+LSR+ Sbjct: 342 GAAGARLLAERLAGPSTDLALIRRRHDAVAFLVAEGALRAELRADLARAPDMARALSRIG 401 Query: 383 IGRGEPKDIAVIRDGIRSGINILN-LFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 +GR P+D+A +RDG+ + +I L LP E+ A L + L +TL++ L+D Sbjct: 402 VGRAGPRDLAALRDGLDAARSIATRLAGAGALPGEIGKAARLLATVGDGLVETLAAALAD 461 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 +LP +RDG F+R+G A LDE R+L+ S+R +A LQ +YA ET ++L+IKHNN LG+ Sbjct: 462 ELPLVRRDGNFVREGYRAELDEARALQSDSRRFVAGLQTRYAAETGCRSLRIKHNNLLGF 521 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IEV + L KD ++ F+HRQTM + RFT++EL +LE+RI NA AL +ELE Sbjct: 522 YIEVPQAVGETLLKD-PWRETFVHRQTMVDAMRFTSVELGELESRIANAAGRALALELEI 580 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 FE L+ A+++Q+ +++ A+ +A +D++ + A LA E ++ RP++D S F V+ RHP+ Sbjct: 581 FEALAAAVMDQAAAINAAATALAALDVAASHAELAVELDWTRPVLDESLTFRVEGARHPV 640 Query: 622 VEKTLKQQSSKPFIANDCDLSCPND-----KNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 VE L+Q + +PFIAN CDLS + + +G++ ++TGPNMGGKSTFLRQNALI ++ Sbjct: 641 VEAALRQ-AGEPFIANSCDLSGSENEARSGREAGQILIVTGPNMGGKSTFLRQNALIAVL 699 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQMG++VPA AH+G+VD+LFSRVG+AD+LA G STFMVEM+ETA+ILNQAT +S V+LD Sbjct: 700 AQMGAFVPARSAHLGLVDRLFSRVGAADDLARGHSTFMVEMVETAAILNQATRRSLVVLD 759 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGTAT DGLSIAWA +E+LHE CR L ATHFHELT L++ L+R NATL+V++ Sbjct: 760 EIGRGTATFDGLSIAWACLEHLHEVTGCRALFATHFHELTGLARRLERLSNATLKVTEWK 819 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 ++FLH+V+PG AD SYG+QV +LAGLP +VI+RA IL EK + R E Sbjct: 820 GDVVFLHEVVPGAADRSYGLQVARLAGLPASVIARAKVILADLEK--GDGGRGRRAPVAE 877 Query: 857 I-----QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + + + + + L+ D ++P AL LY +KA Sbjct: 878 LPLFAALPPAPEPPPAPKPDALRDLLGGLDPDGLTPREALDALYRLKA 925 >gi|254454800|ref|ZP_05068237.1| DNA mismatch repair protein MutS [Octadecabacter antarcticus 238] gi|198269206|gb|EDY93476.1| DNA mismatch repair protein MutS [Octadecabacter antarcticus 238] Length = 872 Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/880 (45%), Positives = 564/880 (64%), Gaps = 23/880 (2%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY+EIK+ +PD+L+FYRMGDFYELFFDDA+ A+ L I LTKRGKHLG DI MCG Sbjct: 6 TPMMVQYLEIKADHPDALLFYRMGDFYELFFDDAVAAAGALDIALTKRGKHLGGDIAMCG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ LI+ GHR+A+CEQ+ESP EAKKRG KS+V R V R+VTPGTLTED LL Sbjct: 66 VPYHAAEGYLLTLIRKGHRVAVCEQLESPAEAKKRGYKSIVNRGVTRVVTPGTLTEDSLL 125 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 N+L A A +R + A+AW+DISTG F + + L ++ R++P+E++ S+ + Sbjct: 126 DARRHNFLAAYASVRGDGALAWVDISTGAFSVLGCDGAGLGPELARLNPKEVLLSD--VG 183 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAIS 265 A++ ++ E G N FD + E R+ Y ++++D FG+F++ E A +A + Sbjct: 184 EADFGTIVEDSGAAVTVLGNAAFDSTNGEKRLCLVYGVSSLDGFGAFTRAEVAALSAVVE 243 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y+ TQ P + P RE ++ + ID++ R +LE+ R ++G R SLL ID + T Sbjct: 244 YLDITQKGKLPLLRAPVREKREAAMQIDASTRKSLELTRGMNGGRAGSLLSVIDRTQTAG 303 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 G RL R++SP + +I R D++ + + N + + L+ PD+ R+LSRL + R Sbjct: 304 GARLLERRLSSPSRNLAEIGARQDAVAWCLDNGDVAAFLDDRLREVPDLDRALSRLSMDR 363 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPT 445 G P+D+ IR I I ++ L +D+P+ L A L L K L L + P Sbjct: 364 GGPRDMTAIRSAIEQATVIADM-LPDDMPDALAAAARDLVG-QDVLLKLLDDALVAEPPL 421 Query: 446 FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEV 505 RDGGF+ G D LDE RSLRD+ + +IA+LQ +YA+E + LKIKHNN LGYFIEV Sbjct: 422 LARDGGFIASGYDTELDEFRSLRDEGRSVIAALQSRYAQEAGVTGLKIKHNNVLGYFIEV 481 Query: 506 TSS-SASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEI 564 T++ SA +L L + FIHRQT +N RFTT+EL +LE RI NA L IE + Sbjct: 482 TATHSAKMLAAQL--SETFIHRQTTANQVRFTTVELSELETRILNAGGRCLEIEKRLYSF 539 Query: 565 LSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEK 624 + AII Q+ L ++ +A D+S ALA LA+E+ + RP + F++ DGRHP+VE Sbjct: 540 IVGAIIAQAPMLFTLARALAEFDLSAALARLAREEGWVRPTMTTEREFLITDGRHPVVEA 599 Query: 625 TLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684 LK ++ F+ANDCDL ++WLLTGPNM GKST+LRQNALI ++AQMG++VP Sbjct: 600 ALKPSGTQ-FVANDCDL------RDEQIWLLTGPNMAGKSTYLRQNALIAVLAQMGAFVP 652 Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744 A A IGIV ++FSRVG++D+L+ G+STFMVEM+ETA+ILNQA +++ VILDEIGRGTAT Sbjct: 653 AKSATIGIVSQVFSRVGASDDLSKGQSTFMVEMVETAAILNQADDRALVILDEIGRGTAT 712 Query: 745 LDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHK 804 DGLSIAWAT+E+LH+ NRCR L ATH+HE+T LS L NAT+ V + +IFLH+ Sbjct: 713 YDGLSIAWATLEHLHDINRCRALFATHYHEMTGLSDKLDGVANATVTVKEWEGDVIFLHE 772 Query: 805 VIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DMRLYYPEIQT 859 V G AD SYG+QV +LAGLP +V++RA +L+ E+ ++ D+ L+ Sbjct: 773 VKRGTADRSYGVQVARLAGLPASVVARAKVVLEALERGEREGKQKAVIDDLPLFSATPAP 832 Query: 860 KESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 K S+ + ++K + D++SP AL +Y ++ Sbjct: 833 APQKTAPSEVEA----RLKDVMPDDLSPKDALNLIYELRG 868 >gi|254440605|ref|ZP_05054099.1| DNA mismatch repair protein MutS [Octadecabacter antarcticus 307] gi|198256051|gb|EDY80365.1| DNA mismatch repair protein MutS [Octadecabacter antarcticus 307] Length = 872 Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/882 (45%), Positives = 570/882 (64%), Gaps = 23/882 (2%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S TPMM QY+EIK+ +PD+L+FYRMGDFYELFFDDA+ A+ L I LTKRGKHLG DI M Sbjct: 4 SVTPMMAQYLEIKAGHPDALLFYRMGDFYELFFDDAVAAAGALDIALTKRGKHLGDDIAM 63 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVP H A Y+ LI+ GHR+A+CEQ+ESP EAKKRG KS+V+R V R+VTPGTLTED Sbjct: 64 CGVPYHAAEGYLLTLIRKGHRVAVCEQLESPAEAKKRGYKSIVKRGVTRVVTPGTLTEDS 123 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 LL N+L A A +R + A+AW+DISTG F + + L ++ R++P+E++ S+ Sbjct: 124 LLDARRHNFLAAYANVRGDGALAWVDISTGAFSVLGCDAAGLGPELARLNPKEVLLSD-- 181 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + A++ + E G N FD + E R+ Y+++++D FG+F++ E A +A Sbjct: 182 VGDADFGVIVEDSGAAVTVLGNAAFDSTSGEKRLCGVYSVSSLDGFGAFTRAEIAALSAV 241 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 + Y+ TQ P + P RE ++ + ID++ R +LE+ ++G R SLL ID + T Sbjct: 242 VEYLDITQKGKLPLLRPPVREKREAAMQIDASTRKSLELTHGMNGGRAGSLLWVIDRTQT 301 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL R++SP D +I+ R D++ + + + ++ L+ PD+ R+LSRL + Sbjct: 302 AGGARLLERRLSSPSRDLAEISARQDAVAWCLDQGNVAALLEDRLREVPDLDRALSRLSM 361 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 RG P+D+A IR I I+ L +++P+ L A + L L +++++ Sbjct: 362 DRGGPRDMAAIRSAIEQA-EIIADALPDEMPKALAAAAQDLVGQDALLTLLDDALVAEP- 419 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P RDGGF+ G D LDE RSLRD+ + +IA+LQ +YA++ + LKIKHNN LGYFI Sbjct: 420 PLLARDGGFIAGGYDTELDEFRSLRDEGRSVIAALQSRYAQDAGVTGLKIKHNNVLGYFI 479 Query: 504 EVTSS-SASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 EVT++ SA +L + L FIHRQT +N RFTT+EL +LE RI NA L IE + Sbjct: 480 EVTATHSAKMLAEPLSKT--FIHRQTTANQVRFTTIELSELETRILNAGGRCLEIEKRIY 537 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 + AII Q+ L ++ +A D+S A+A LA+E+++ RP++ F++ DGRHP+V Sbjct: 538 SSIVAAIIAQAPMLFTLARALAEFDLSAAMARLAREESWVRPLMTTEREFVITDGRHPVV 597 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 E LK ++ F+ANDCDLS ++ LLTGPNM GKST+LRQNALI ++AQMG++ Sbjct: 598 EAALKPSGTQ-FVANDCDLSLD------QICLLTGPNMAGKSTYLRQNALIAVLAQMGAF 650 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA A IGIV ++FSRVG++D+L+ G STFMVEM+ETA+ILNQA +++ VILDEIGRGT Sbjct: 651 VPAKSATIGIVSQIFSRVGASDDLSKGHSTFMVEMVETAAILNQADDRALVILDEIGRGT 710 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFL 802 AT DGLSIAWAT+E+LH+ NRCR L ATH+HE+T LS L NAT+ V + +IFL Sbjct: 711 ATYDGLSIAWATLEHLHDVNRCRALFATHYHEMTGLSDKLDGVANATVTVKEWEGDVIFL 770 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DMRLYYPEI 857 H+V G AD SYG+QV +LAGLP TV++RA +L+ EK ++ D+ L+ Sbjct: 771 HEVKRGTADRSYGVQVARLAGLPATVVARAKVVLEALEKGEREGKQKAVIDDLPLFSATP 830 Query: 858 QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 +K S+ + ++K + D++SP AL +Y ++ Sbjct: 831 TPTPTKTAPSEVEA----RLKEVMPDDLSPKDALNLIYELRG 868 >gi|89067434|ref|ZP_01154947.1| DNA mismatch repair protein [Oceanicola granulosus HTCC2516] gi|89047003|gb|EAR53057.1| DNA mismatch repair protein [Oceanicola granulosus HTCC2516] Length = 882 Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/879 (45%), Positives = 562/879 (63%), Gaps = 17/879 (1%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY+EIK NPDSL+FYRMGDFYE+FFDDA+ A+ L I LTKRGKHLG+DI MCG Sbjct: 9 TPMMAQYLEIKQANPDSLLFYRMGDFYEMFFDDAVAAAEALDIALTKRGKHLGEDIAMCG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH A Y+ LI+ G R+AI EQ+E P EAKKRG KS+V+R+VVRLVTPGTLTE+ LL Sbjct: 69 VPVHAAEGYLLTLIRKGFRVAIAEQLEDPAEAKKRGAKSVVKRDVVRLVTPGTLTEESLL 128 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 N+L A A +R E A+AW+DISTG + T + RL ++ R+ RE++ +E Sbjct: 129 DARRHNFLAAYATVRDEGALAWVDISTGALSVMTCSAMRLGPELARLGAREVLLAET--I 186 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAIS 265 A+Y + LG FD + E R+ + + + +++ FG+F++ E +A A ++ Sbjct: 187 EADYAEMVSDLGAAVTPLGATSFDSTSGERRLCEIFRVGSLEGFGTFTRAEISALAGLVA 246 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y++ TQ P + P +E ++ + ID+A R +LE+ ++G R SLL +D ++T Sbjct: 247 YLEITQRGKLPLLRPPVKEGARAAMQIDAATRRSLELTSAMTGGRAGSLLGAVDRTVTAG 306 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 G RL R+++P +I R ++ ++ L P+++ L+ D+ R+LSRL + R Sbjct: 307 GARLLERRLSAPSCQLDRIRDRQAAVAAMVEEATLAEPLREALRGVADIDRALSRLALER 366 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPT 445 G P+D+A +R+ + + I L DLPE L A L L ++++++ P Sbjct: 367 GGPRDMAGLRNSLAQAVEIAGLLEGRDLPELLADAARDLVGHDMLLALLEAALVAEP-PL 425 Query: 446 FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEV 505 RDGGF+ G D LDE R LRD+ + +IA +Q +YA +T I +LKIKHNN LGYFIE Sbjct: 426 LARDGGFVAPGHDPDLDEARRLRDEGRSVIAGMQAEYARQTGIASLKIKHNNVLGYFIET 485 Query: 506 TSSSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEI 564 T++ A +L L D FIHRQT ++ RFTT+EL +LE +I NA AL IE + Sbjct: 486 TATHAEKMLAPPL--SDSFIHRQTTASQVRFTTVELSELETKILNAGARALEIEKRLYAS 543 Query: 565 LSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEK 624 L A+++++ L ++ +A ID++ LA LA+ +++CRP++D+S F V GRHP+VE+ Sbjct: 544 LREAMLDEAARLSELARALAEIDLACGLADLARARDWCRPVVDDSRAFEVCGGRHPVVEE 603 Query: 625 TLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684 L++ + PF+ANDCDL + LLTGPNM GKST+LRQNALI ++AQ G+YVP Sbjct: 604 ALRRDGA-PFVANDCDL------GEAPIHLLTGPNMAGKSTYLRQNALIAVLAQAGAYVP 656 Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744 A AH+GIV +LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA +++ VILDEIGRGTAT Sbjct: 657 AESAHVGIVSQLFSRVGASDDLARGRSTFMVEMVETAAILNQADDRALVILDEIGRGTAT 716 Query: 745 LDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHK 804 DGLSIAWAT+E+LHE NRCR L ATH+HE++ L+ L NAT+ V + ++FLH+ Sbjct: 717 YDGLSIAWATLEHLHEVNRCRALFATHYHEMSALAGKLAGVENATVAVKEWEGEVVFLHE 776 Query: 805 VIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY---YPEIQTKE 861 V G AD SYG+QV +LAGLP++VI RA +L+ E R P Sbjct: 777 VRRGTADRSYGVQVARLAGLPDSVIERARVVLEALEAGEREGGGARRAVIDDLPLFAAAP 836 Query: 862 SKNNLSKNDKLFVE-KIKCLNLDEMSPLTALKTLYAVKA 899 +S VE +++ + DE+SP AL +Y +KA Sbjct: 837 PPAPVSPVKPSGVEARLEEVLPDELSPRDALALVYELKA 875 >gi|254462949|ref|ZP_05076365.1| DNA mismatch repair protein MutS [Rhodobacterales bacterium HTCC2083] gi|206679538|gb|EDZ44025.1| DNA mismatch repair protein MutS [Rhodobacteraceae bacterium HTCC2083] Length = 871 Score = 778 bits (2009), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/886 (47%), Positives = 576/886 (65%), Gaps = 35/886 (3%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM Q++EIK PD+L+FYRMGDFYELFFDDA+ AS L I LTKRGKH G +IPMCGVP Sbjct: 1 MMAQFLEIKESYPDALLFYRMGDFYELFFDDAVAASEALDIALTKRGKHQGSEIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A Y+ LI+ G R+A+CEQ+ESP EAKKRG+KS+VRR+VVRLVTPGTLTE+ LL Sbjct: 61 HHAAEGYLLTLIRKGFRVAVCEQMESPAEAKKRGHKSVVRRDVVRLVTPGTLTEESLLDA 120 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHA 207 NYL A A +R + A+AW D+STG F + + RL ++ R+ P E+I S+ Sbjct: 121 RRHNYLAAYADVRGDGALAWADMSTGAFHVMPLSTMRLSPELARLAPSEVILSDT--CDT 178 Query: 208 EYKSLFETLG-NVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISY 266 E +L +G +V+ P F D + RI D + I ++D FG FS+ E +A +A I Y Sbjct: 179 EIVNLVSEMGASVSPLSPGAF-DSTQGTKRICDVFQIASLDAFGEFSRPEISAMSALIEY 237 Query: 267 IKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAG 326 ++ TQ P + P++E T+ ID+A R NLE+ ++LSG R+ +LL ID S+T G Sbjct: 238 LEITQKGKLPLLRPPQKESSGGTMQIDAATRRNLELTQSLSGGRKDTLLSVIDRSVTAGG 297 Query: 327 GRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRG 386 GRL R++SP D T I RLD++++F ++ ++ L+ PD+ R+LSR+ + RG Sbjct: 298 GRLLERRLSSPSRDLTTIQARLDAVSWFFEHSRATEELRGTLRKVPDLDRALSRISLERG 357 Query: 387 EPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP--QSLEKTLSSMLSDDLP 444 P+DIA IR+G+ I +DLP + + L + L L+ L + P Sbjct: 358 GPRDIAAIRNGLEQAEAIQ----ASDLPHSATLIQQSIASLGGHEDLINLLNDALVAEPP 413 Query: 445 TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIE 504 RDGGF+ G D+ LDETR+LRD+ + +IAS+Q YAE + +LKIKHNN LGYFIE Sbjct: 414 LLARDGGFVASGYDSELDETRALRDEGRGVIASMQKNYAEIAGVASLKIKHNNVLGYFIE 473 Query: 505 VTSSSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 T++ A +L L + FIHRQT +N RFTT+EL ++E +I NA N +L IE ++ Sbjct: 474 TTATHAEKMLATPL--NETFIHRQTTANQVRFTTVELSEIETKILNAGNRSLEIEKRHYQ 531 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L+ AI+ + + N S+ +A ID++ +LA LA +N+ +P +D +F +K GRHP+VE Sbjct: 532 TLTKAILAGAPEVSNTSRALAEIDLNASLAALASAENWNKPTVDTGRSFDIKSGRHPVVE 591 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 + L+ Q PFIAN+CDL+ ND +WLLTGPNM GKSTFLRQNALI ++AQMGS+V Sbjct: 592 QALRNQGGAPFIANNCDLADGND--GAAIWLLTGPNMAGKSTFLRQNALIAVLAQMGSFV 649 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA A+IGIV +LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA + VILDEIGRGTA Sbjct: 650 PADSAYIGIVSQLFSRVGASDDLARGRSTFMVEMVETAAILNQADENALVILDEIGRGTA 709 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DGLSIAWAT+E+LH N+ R L ATH+HELT+L+ L+ NAT+ V + +IFLH Sbjct: 710 TYDGLSIAWATLEHLHNVNKSRALFATHYHELTNLTAKLEGAENATVSVREWEGDVIFLH 769 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH--NQK----DMRLYY--- 854 +VI G AD SYG+QV KLAGLP V+ RA +L EK QK D+ L+ Sbjct: 770 EVIKGAADRSYGVQVAKLAGLPAAVVERARIVLDALEKGEREGGGQKAVIDDLPLFSAAP 829 Query: 855 --PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P IQTK+S ++ + ++ D++SP AL +Y +K Sbjct: 830 PPPPIQTKQSPA---------IDLLNDIHPDDLSPKDALNLIYKLK 866 >gi|149204367|ref|ZP_01881334.1| DNA mismatch repair protein [Roseovarius sp. TM1035] gi|149142252|gb|EDM30299.1| DNA mismatch repair protein [Roseovarius sp. TM1035] Length = 887 Score = 778 bits (2009), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/883 (46%), Positives = 562/883 (63%), Gaps = 13/883 (1%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY+EIK+ P++L+FYRMGDFYELFFDDA A+ L I LTKRGKHL +DIPMCG Sbjct: 9 TPMMAQYLEIKAQYPEALLFYRMGDFYELFFDDAAAAAEALDIALTKRGKHLEQDIPMCG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH A Y+ LI+ G R+A+CEQ+E P EAKKRG KS+V R VVRLVTPGTLTE+ LL Sbjct: 69 VPVHAAEGYLLTLIRKGFRVAVCEQMEDPAEAKKRGAKSVVHREVVRLVTPGTLTEESLL 128 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 NYL++ A +R A+AW+DISTG F + RL ++ R+ PRE++ +E ++ Sbjct: 129 EARRHNYLVSFATVRGAGALAWVDISTGAFHVMPLTPARLGPELARLAPREVLLTEADI- 187 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAIS 265 A L G FD + E R+ Y + T+D +GSF++ E A A + Sbjct: 188 -ANLGELVSESGASLTGLGQAAFDSTAGERRLCLLYGVDTLDAYGSFTRPEIAAMGAIVD 246 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 ++ TQ P + P RE+ + ID+A R NLE+ +L+G R SLL TID ++T Sbjct: 247 WLDITQKGKLPLLQPPTRENEARVMQIDAATRRNLELTHSLNGGRAGSLLATIDRTVTAG 306 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 GGRL R++SP + +RL+S++F ++ + +++ L+ PD+ R+LSRL + R Sbjct: 307 GGRLLERRLSSPSRALDTVQSRLESVHFAVEQSRICADLRESLRKVPDLDRALSRLGLDR 366 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPT 445 G P+D+A +R+G+ + I DLP L A L SL L L + P Sbjct: 367 GGPRDLAAVRNGLAQAMEIAQRLANTDLPPLLHQAALSLTG-HDSLLDLLDQALVAEPPL 425 Query: 446 FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEV 505 RDGGF+ G D LDE R LRD+ + +IA +Q Y +T I +LKIKHNN LGYFIEV Sbjct: 426 LARDGGFIAPGYDRDLDEARQLRDEGRGVIARMQGDYITQTGIPSLKIKHNNVLGYFIEV 485 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEIL 565 TS+ A + + + F HRQT +N RFTT+ L ++E RI NA AL IE ++ L Sbjct: 486 TSTHADRMLS-VPLNETFKHRQTTANQLRFTTVPLSEMETRILNAGGRALEIEKRLYDAL 544 Query: 566 SNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKT 625 I++++ + + ++ +A +D++ ALA LA+ +N+CRP +D S + GRHP+VE+ Sbjct: 545 KTEILDRAAEIAHCARALAELDLTTALADLARAENWCRPNVDQSRALNIIGGRHPVVERA 604 Query: 626 LKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPA 685 L+ Q PFIANDCDL +D +WLLTGPNM GKSTFLRQNALI ++AQ+GSYVPA Sbjct: 605 LRSQGGAPFIANDCDLGGKSD-----IWLLTGPNMAGKSTFLRQNALIALLAQIGSYVPA 659 Query: 686 SYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATL 745 + AHIG+V +LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA + + VILDEIGRGTAT Sbjct: 660 TSAHIGLVSQLFSRVGASDDLARGRSTFMVEMVETAAILNQADDHALVILDEIGRGTATW 719 Query: 746 DGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKV 805 DGLSIAWAT+E+LH+ N CR L ATH+HELT LS L R NAT+ V + + +IFLH+V Sbjct: 720 DGLSIAWATLEHLHDVNACRALFATHYHELTHLSDKLDRVENATVSVKEHDGDVIFLHEV 779 Query: 806 IPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL---YHHNQKDMRLYYPEIQTKES 862 G+AD SYG+QV KLAGLP +V++RA +L EK H QK + P Sbjct: 780 RRGVADRSYGVQVAKLAGLPASVVARARVVLDALEKGDREGHRAQKTLIDDLPLFAALAP 839 Query: 863 KNNLSKNDKLFVEK-IKCLNLDEMSPLTALKTLYAVKAWTLEK 904 + VEK + + D ++P AL+ +Y +K+ + E+ Sbjct: 840 PPAPKPPRESVVEKRLSAILPDALTPREALELIYELKSLSQEQ 882 >gi|254476264|ref|ZP_05089650.1| DNA mismatch repair protein MutS [Ruegeria sp. R11] gi|214030507|gb|EEB71342.1| DNA mismatch repair protein MutS [Ruegeria sp. R11] Length = 872 Score = 778 bits (2009), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/878 (45%), Positives = 575/878 (65%), Gaps = 17/878 (1%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY++IK+ PD+L+FYRMGDFYE+FF+DA+ A+ L I LTKRGKH G DIPMCGVP Sbjct: 1 MMAQYLDIKAQYPDALLFYRMGDFYEMFFEDAVNAAEALDIALTKRGKHDGNDIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 VH+A Y+ LI+ G R+A+ EQ+ESP EAKKRG+KS+V+R+VVRLVTPGT+TED LL Sbjct: 61 VHSAEGYLLTLIRKGFRVAVGEQLESPAEAKKRGSKSVVKRDVVRLVTPGTITEDSLLEA 120 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHA 207 N+L A +R E AIAW DISTG F + R+ ++ R+ P E++ + Sbjct: 121 RRHNFLTAYCELRDEAAIAWADISTGAFHVMPIARVRVSPELARLAPSELLVPDGPCLD- 179 Query: 208 EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYI 267 + + + + FD + +E R+ + + ++T++ FG+FS+ E +A A I Y+ Sbjct: 180 QLRPIADDHQIPLTPLAKSSFDSTAAEKRVCELFKVSTLEAFGTFSRAEISAMGAVIDYL 239 Query: 268 KKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGG 327 + TQ P + P +E + ID+A R NLE+ R+LSG R SLL +D ++T AG Sbjct: 240 EITQKGKLPLLQPPVQEAEDRVVQIDAATRRNLELTRSLSGGRAGSLLSVVDRTVTPAGA 299 Query: 328 RLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGE 387 RL +R++SP + I TRL +++F ++ L + ++ L+ +PD+ R+LSRL + RG Sbjct: 300 RLLEQRLSSPSRNLDVIQTRLAALDFAVEQTQLSSDLRAALRKTPDLDRALSRLALERGG 359 Query: 388 PKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFK 447 P+D+A +R+ + I +L ++P L A+ L L ++++++ P Sbjct: 360 PRDLAAVRNTLIQAEAISDLCSGQNMPPLLHEALTALTGFDALLPLLDAALIAEP-PLLA 418 Query: 448 RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTS 507 RDGGF+ +G D+ LDE R+LRD+ + +IA+LQ KY++ T I +LKIKHNN LGYFIE T+ Sbjct: 419 RDGGFIAEGYDSELDEARTLRDEGRSVIAALQKKYSDHTGITSLKIKHNNVLGYFIETTA 478 Query: 508 SSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILS 566 + A +L L + +IHRQT +N RFTT+EL ++E RI NA N AL IE + LS Sbjct: 479 THAEKMLSAPL--SETYIHRQTTANQVRFTTVELSEIETRILNAGNLALEIEKRLYTRLS 536 Query: 567 NAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTL 626 +AI+ ++ +L+ A++ +A +D+ ALA LA+ +N+ RP +DNS F + GRHP+VE+ L Sbjct: 537 DAILAEAGALNGAARGLAELDLVTALADLARGENWQRPTVDNSRAFDITGGRHPVVEQAL 596 Query: 627 KQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPAS 686 +QQ F+ANDC L+ ND + +WLLTGPNM GKSTFLRQNALI ++AQMGSYVPA Sbjct: 597 RQQGGNAFVANDCGLTA-ND-GAAAVWLLTGPNMAGKSTFLRQNALIALLAQMGSYVPAD 654 Query: 687 YAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLD 746 AHIG++ +LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA +++ VILDEIGRGTAT D Sbjct: 655 KAHIGLISQLFSRVGASDDLARGRSTFMVEMVETAAILNQADDRALVILDEIGRGTATYD 714 Query: 747 GLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVI 806 GLSIAWAT+E+LHE NR R L ATH+HELT L+ L NAT+ V + +IFLH+V Sbjct: 715 GLSIAWATLEHLHEVNRARALFATHYHELTQLAGKLAGVENATVSVKEWEGEVIFLHEVK 774 Query: 807 PGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL------YYPEIQTK 860 G AD SYG+QV +LAGLP +V++RA D+L E+ +++ Sbjct: 775 KGAADRSYGVQVAQLAGLPASVVARARDVLDMLEEGSRSGGGKIQIDDLPLFAAAPAPQP 834 Query: 861 ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 S ++L E ++ D++SP AL+ LY +K Sbjct: 835 RPAAGPSPVEELLSE----IHPDDLSPREALEALYRLK 868 >gi|114769785|ref|ZP_01447395.1| DNA mismatch repair protein [alpha proteobacterium HTCC2255] gi|114549490|gb|EAU52372.1| DNA mismatch repair protein [alpha proteobacterium HTCC2255] Length = 878 Score = 776 bits (2003), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/889 (46%), Positives = 580/889 (65%), Gaps = 29/889 (3%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S TPMM Q++EIKS P++L+FYRMGDFYELFFDDA+ A+ L I+LTKRGKHLG DIPM Sbjct: 5 SITPMMAQFLEIKSEYPNALLFYRMGDFYELFFDDAVAAAAALDISLTKRGKHLGNDIPM 64 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVP H+A +Y+ LI+ G R+A+CEQ+E+P EAK RG+KS+V+R VVRLVT GTLTED Sbjct: 65 CGVPHHSAENYLLTLIRKGFRVAVCEQLETPAEAKARGSKSVVKRGVVRLVTSGTLTEDS 124 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 LLS +SNYL A + +R AIAW+D+STG + + +++P E++ S+ Sbjct: 125 LLSARESNYLCAFSILRKSSAIAWVDVSTGDLHVQNCPQVSYGPMLAQLNPAEVLISDT- 183 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 ++ +K G + FD + + R+ D++ + ++D FG+F++ E +A A Sbjct: 184 -NYDSFKDQTSEFGTTLTSLSPASFDSTSNTRRLCDFFKVQSLDGFGTFTRAEISALGAI 242 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 I Y++ TQ P + P +E+++ + ID++ R NLE+ TLSGS+ SLL ID ++T Sbjct: 243 IDYLEITQKGKLPALKLPIKENLEDFVQIDTSTRRNLELTHTLSGSKNGSLLDVIDRTVT 302 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G G RL +R++SP T I+ RLD+I + N L IQ +L+ + D+ R+ SR+ + Sbjct: 303 GPGARLLEKRLSSPSTCLNTISLRLDAIEAYKPNNSLREEIQNVLRQTSDMERAFSRISL 362 Query: 384 GRGEPKDIAVIRDGIRSGINI------LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 RG P+D IR+ ++ G ++ L+ L + + L+G E + L S Sbjct: 363 DRGGPRDFIAIRNSLKKGQDLSRSALDLDAVLIKNARQNLKGNEEIIH--------ILDS 414 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + D+ P RDGGF+R G + LDE + LRD +++I+S+Q + T I +LKIK+NN Sbjct: 415 VFDDNSPLLARDGGFVRSGFNEDLDEIKRLRDDGRKVISSMQTDFLNLTGITSLKIKYNN 474 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 LGYFIE ++ A + D S FIHRQT +N RFTT+EL ++E +I NA AL + Sbjct: 475 VLGYFIETPATHAKKMLSDAFSS-TFIHRQTTANAIRFTTIELSEIETKILNAGGKALSL 533 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 ELE F+ IIE SE + NA++ +A ID++IALA +A +N+CRP +D S F + G Sbjct: 534 ELEIFDQTKLKIIEFSERILNAAKALAEIDLTIALADIAMSENWCRPKLDKSRKFKITAG 593 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE L++ +S FIAN+CDLS + + +WLLTGPNM GKSTFLRQNA+I +MA Sbjct: 594 RHPVVEAALQKSASGVFIANNCDLSAGQNGDK-PIWLLTGPNMAGKSTFLRQNAIIALMA 652 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+GS+VPA A IG++ +LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA + VILDE Sbjct: 653 QIGSFVPAESAEIGMITQLFSRVGASDDLARGRSTFMVEMVETAAILNQAGENALVILDE 712 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGTAT DGLSIAWAT+E LH N CR L ATH+HELT L+++L+ NAT+ V + Sbjct: 713 IGRGTATYDGLSIAWATLENLHNINNCRALFATHYHELTSLTENLEGLMNATVGVKEWKG 772 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ----KDMRLY 853 IIFLH+V G AD SYG+QV KLAG+P TVI RA ++L EKL + +Q K + Sbjct: 773 DIIFLHEVKKGAADRSYGVQVAKLAGIPQTVIRRATEVL---EKLENADQGGKTKAIINE 829 Query: 854 YPEIQTKESKNNLSK--NDKLFVEKIKCLNLDEMSPLTALKTLYAVKAW 900 P T + NN+ K E+IK ++ DE++P AL +Y +K++ Sbjct: 830 LPLFNT--NPNNMMKPEGSSQIEEQIKDIHPDELTPKDALALIYKLKSF 876 >gi|37728034|gb|AAO43496.1| DNA mismatch repair protein [Rhizobium etli] Length = 646 Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/626 (57%), Positives = 480/626 (76%), Gaps = 4/626 (0%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E+ S+TPMM QYIEIK+ NP SL+FYRMGDFYELFF+DAL ASR LGITLTKRG+H+G+ Sbjct: 21 ESRASATPMMEQYIEIKANNPGSLLFYRMGDFYELFFEDALEASRALGITLTKRGQHMGQ 80 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 DIPMCGVPVH A+ Y+QKLI +G R+A+CEQIE P +AKKRG KS+V+R+V+RLVTPGT+ Sbjct: 81 DIPMCGVPVHAADDYLQKLISLGFRVAVCEQIEDPAQAKKRGAKSVVKRDVIRLVTPGTI 140 Query: 140 TEDQLLSPTDSNYLMAVARIR----TEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPR 195 TE++LLSP++SNYLMA+ARIR + A+AWIDISTG+F+++ + RL++DI+RIDPR Sbjct: 141 TEEKLLSPSESNYLMALARIRGGAEPQLALAWIDISTGVFRLAETESSRLLADILRIDPR 200 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQV 255 E+I + AE K +F+ LG AV QP+V FD + +E RIA Y+ ++T+D FGSFS+ Sbjct: 201 ELILPDTIFHDAELKPVFDVLGRTAVPQPSVLFDSASAEGRIARYFGVSTLDGFGSFSRA 260 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 E AAAAA++Y++KTQ+ +P +G PERE STLFID A R+NLE+ RTLSG R SLL Sbjct: 261 ELAAAAAAVAYVEKTQIAERPPLGKPERESAASTLFIDPATRANLELARTLSGDRNGSLL 320 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 K ID ++TG G RL AER+ SPLTD +IN RLDSI F I+ P L ++ LK PD+P Sbjct: 321 KAIDRTVTGGGARLLAERLMSPLTDPARINARLDSIGFLIEEPSLCGKLRDTLKHVPDMP 380 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R+LSRL + RG P+D+ IR G+++ + +L LPEEL A+ L+ LP LE L Sbjct: 381 RALSRLALDRGGPRDLWAIRQGLQAAGGLADLLASAMLPEELDQALSGLQALPAGLETLL 440 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + L+D+LP KRDGGFLRDGA A LDE R+LRDQS+R+IA LQL+YAEET I++LKIKH Sbjct: 441 AETLADELPLLKRDGGFLRDGASAELDEVRALRDQSRRVIAGLQLQYAEETGIRSLKIKH 500 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 NN LGYFIEVT+ +A+ + + E+K RFIHRQTM++ RFTT EL DLE+RI NA + AL Sbjct: 501 NNILGYFIEVTAGNAAPMTETSEAKSRFIHRQTMASAMRFTTTELADLESRIANAADRAL 560 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 IELE+F+ ++ A++ Q+ES+ + ++ +A+ID++ LA+LA+EQ YCRP +D S F ++ Sbjct: 561 TIELEAFDRMTAAVVAQAESIKSGARALAVIDVAAGLALLAEEQAYCRPQVDGSKMFAIE 620 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDL 641 GRHP+VE+ L++Q+ PF+AN+CDL Sbjct: 621 GGRHPVVEQALRRQAGGPFVANNCDL 646 >gi|119383579|ref|YP_914635.1| DNA mismatch repair protein [Paracoccus denitrificans PD1222] gi|189083165|sp|A1B095|MUTS_PARDP RecName: Full=DNA mismatch repair protein mutS gi|119373346|gb|ABL68939.1| DNA mismatch repair protein MutS [Paracoccus denitrificans PD1222] Length = 878 Score = 773 bits (1996), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/816 (49%), Positives = 531/816 (65%), Gaps = 13/816 (1%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY+ I+ NP +L+FYRMGDFYE+FF+DA+ A+ L I LTKRG HLG+ IPMCG Sbjct: 6 TPMMAQYLAIREANPGALLFYRMGDFYEMFFEDAVAAAAALDIALTKRGTHLGEPIPMCG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH A Y+ LI+ G R+AI EQ+E P EAKKRG+KS+V R+VVRLVTPGTLTE+ LL Sbjct: 66 VPVHAAESYLLTLIRKGFRVAIAEQMEDPAEAKKRGSKSVVARDVVRLVTPGTLTEESLL 125 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 N+L + A +R E A+AW+DISTG F++ RL ++ R PRE++ +E Sbjct: 126 EARRHNFLASFASVRDESALAWVDISTGAFRVMPCPPARLAPELARHAPRELLAAEG--- 182 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAIS 265 A + G P FD S + R+ +++ T+D FG FS+ E A A Sbjct: 183 -ANLDEIAAEAGAALTELPGGSFDSSAATRRLCALFSVETLDGFGQFSRAELAAMGAIAD 241 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y++ TQ P I P RE + + ID+A R NLE+ + LSG RE SLL ID S+T Sbjct: 242 YLELTQKGRMPLIRPPVREALGGAMQIDAATRRNLELTQALSGGREGSLLAAIDRSVTAG 301 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 G RL RI++P D +I+ R ++ + P L +++ L +PD+ R+LSRL + R Sbjct: 302 GARLLERRISAPSRDLDEIHARQAAVAHLVDEPRLTADLREALSRAPDMDRALSRLALER 361 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPT 445 G P+D+A IR G+ G I + L ND L A L +L L L + P Sbjct: 362 GGPRDLAAIRAGLTQGAAIAAM-LGNDEIAVLAEAAHDLTG-HDALIDLLDEALVAEPPL 419 Query: 446 FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEV 505 RDGGF+ G D LDETR LRD+ + +IA +Q Y ET +++LKIKHNN LGYFIE Sbjct: 420 LARDGGFVAPGYDEDLDETRRLRDEGRGVIARMQADYIAETGVQSLKIKHNNVLGYFIET 479 Query: 506 TSSSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEI 564 TS+ A +L L +RFIHRQT +N RFTT+EL +LE RI NA + AL IE E F Sbjct: 480 TSTHAERMLAPPL--NERFIHRQTTANQIRFTTVELSELETRILNARDRALEIEREIFAR 537 Query: 565 LSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEK 624 LS A+++++ + A++ +A ID++ A A LA + + RP +D S F+++ GRHP+VE+ Sbjct: 538 LSRAVLDRAGPVGQAARALAEIDLTAAFADLASGEGWVRPEVDASRAFVIEGGRHPVVER 597 Query: 625 TLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684 LK++ + F+ANDC L+ + +WLLTGPNM GKSTFLRQNALI I+AQ G +VP Sbjct: 598 ALKRKG-EAFVANDCALT---QGETPAIWLLTGPNMAGKSTFLRQNALIAILAQAGGFVP 653 Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744 A AHIG+V +LFSRVG+AD+LA GRSTFMVEM+ETA+ILNQA + + VILDEIGRGTAT Sbjct: 654 ARRAHIGLVSQLFSRVGAADDLARGRSTFMVEMVETAAILNQADDHALVILDEIGRGTAT 713 Query: 745 LDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHK 804 DGLSIAWA +E+LH TNRCR L ATH+HE+T LS L NAT+ V + +IFLH+ Sbjct: 714 WDGLSIAWAVMEHLHATNRCRALFATHYHEMTSLSARLPGVENATVAVREWEGEVIFLHE 773 Query: 805 VIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 V G AD SYG+QV +LAGLP +V+ RA DIL E Sbjct: 774 VRKGAADRSYGVQVARLAGLPPSVVDRARDILHQLE 809 >gi|163732973|ref|ZP_02140417.1| DNA mismatch repair protein [Roseobacter litoralis Och 149] gi|161393508|gb|EDQ17833.1| DNA mismatch repair protein [Roseobacter litoralis Och 149] Length = 878 Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/880 (46%), Positives = 568/880 (64%), Gaps = 17/880 (1%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY+++K+ D+L+FYRMGDFYE+FF+DA+ A+ L I LTKRGKH G DIPMCG Sbjct: 4 TPMMAQYLDLKADYADALLFYRMGDFYEMFFEDAVAAADALDIALTKRGKHDGADIPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH A Y+ LI+ G R+A+CEQ+ESP EAKKRG+KS+V+R+VVRLVTPGTLTE+ LL Sbjct: 64 VPVHAAEGYLLTLIRKGFRVAVCEQMESPAEAKKRGSKSVVKRDVVRLVTPGTLTEETLL 123 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 +NYL + A++R A+AW DISTG F + + +L ++ R+ P E+I SE + Sbjct: 124 EARRNNYLTSFAQVRDAQALAWADISTGAFHVMPLSALKLGPELARLSPSELICSES--A 181 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAIS 265 + + + + G FD + E RI D + + T+D++G+F++ E A I Sbjct: 182 ENDLREIADDFGIALTGLARASFDSTSGEQRICDLFGVETLDSYGAFTRAEVAAMGGVIQ 241 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y+ TQ P + P+RE T+ ID+A R NLE+ + LSG R SLL ID +IT Sbjct: 242 YLDITQKGKLPLLRPPQRETENRTVQIDAATRRNLELTQALSGGRAGSLLAVIDRTITAG 301 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 GGRL + RIASP D I R D+++F + L + ++ L+ PD+ R+LSRL + R Sbjct: 302 GGRLMSARIASPSRDLETITNRHDAVSFAQERHDLCSTLRDHLRKVPDLDRALSRLSLDR 361 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPT 445 G P+D+A IR+G+ + + +DLP L G+V L + +++ L + L + P Sbjct: 362 GGPRDMAAIRNGLTQAAVLFDTLSSDDLPMLLAGSVNDLSGHERLIDR-LDTTLVAEPPL 420 Query: 446 FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEV 505 RDGGF+ G DA LDE RSLRD+ + +IA +Q ++A T I +LKIKHNN LGYFIE Sbjct: 421 LARDGGFIAAGFDAELDEARSLRDEGRGVIARMQKEFAALTGITSLKIKHNNVLGYFIET 480 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEIL 565 T++ A + S + FIHRQT +N RFTT+EL +LE +I NA AL IE +E L Sbjct: 481 TATHAEKMLSPPMS-ETFIHRQTTANQVRFTTVELSELETKILNAGGRALEIEKRLYETL 539 Query: 566 SNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKT 625 + I+ S + + +A +D++ ALA LA + RP +D S F +++GRHP+VE Sbjct: 540 KSDILACSARIAQTASALAELDLTAALATLATTDGWVRPKVDKSRAFAIENGRHPVVEHA 599 Query: 626 LKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPA 685 L+QQS PFIANDCDLS D + +++LLTGPNM GKST+LRQNA+I ++AQMGS+VPA Sbjct: 600 LRQQSGDPFIANDCDLSAEGD--TAQIYLLTGPNMAGKSTYLRQNAIIALLAQMGSFVPA 657 Query: 686 SYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATL 745 S AHIG+V +LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA +++ VILDEIGRGTAT Sbjct: 658 SSAHIGLVSQLFSRVGASDDLARGRSTFMVEMVETAAILNQADDRALVILDEIGRGTATY 717 Query: 746 DGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKV 805 DGLSIAWAT+E+LH+ N+ R L ATH+HE+T L+ L NAT+ V + +IFLH+V Sbjct: 718 DGLSIAWATLEHLHDVNKSRALFATHYHEMTALAGKLTGVENATVTVKEWEGDVIFLHEV 777 Query: 806 IPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-------DMRLYYPEIQ 858 G AD SYG+QV +LAGLP VI+RA +L+ EK D+ L+ Sbjct: 778 KMGAADRSYGVQVAQLAGLPPAVITRARAVLEILEKGEREGGATHKTLIDDLPLFSVAPA 837 Query: 859 TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 S D E ++ DE++P AL+ LY +K Sbjct: 838 PAPPPAKASAVDAQLAE----IHPDELTPKQALELLYQLK 873 >gi|217978472|ref|YP_002362619.1| DNA mismatch repair protein MutS [Methylocella silvestris BL2] gi|217503848|gb|ACK51257.1| DNA mismatch repair protein MutS [Methylocella silvestris BL2] Length = 925 Score = 772 bits (1993), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/895 (46%), Positives = 588/895 (65%), Gaps = 33/895 (3%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM Q+I IK+ +P SL+FYRMGDFYELFF+DA +A++ LGI LT+RGK+ G+DIPMCG Sbjct: 35 SPMMAQFIAIKAAHPGSLLFYRMGDFYELFFEDAEIAAKALGIVLTRRGKYQGEDIPMCG 94 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPV A Y+ +LI +GHR+++CEQIE P EAKKRG KS+VRR V RLVTPGT+TE+ LL Sbjct: 95 VPVERAQEYLHRLISLGHRVSVCEQIEDPAEAKKRGAKSVVRREVRRLVTPGTITEETLL 154 Query: 146 SPTDSNYLMAVARIRT---EWA--IAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 P +N L+A+AR R +W+ +A +DISTG F +S + ++ ++I RI+P EI+ Sbjct: 155 DPARANRLLAIARARQADGQWSYGLAALDISTGEFLLSEAPEAQIETEIARIEPAEIVIP 214 Query: 201 EKELSHA-------EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS 253 E + E ++ LG +A P +E RI D++ + T+D G+ S Sbjct: 215 EGLMDQPLFVRLAREARAPLTPLGRLAAEGPA-------AERRICDFFGLATLDGLGALS 267 Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 E AAAAA+ Y+ +TQ +P + P R ++ + ID+A R+NLE+ RTL G+RE S Sbjct: 268 PAEIAAAAAALFYVDRTQFSARPALSLPTRVAREAHMSIDAATRANLELTRTLGGAREGS 327 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L+ ID S+T AGGRL AER+A+PLTD +I R +++ FF P L ++ LK++PD Sbjct: 328 LIGAIDRSVTAAGGRLLAERLAAPLTDPDEITRRQEAVAFFFDEPALREAARRALKAAPD 387 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINIL-NLFLKNDLPEELRGAVEKLKKLPQSLE 432 + R+++RL + RG P+D+A +RDG + ++ L +LP EL A L + Sbjct: 388 LMRAIARLALERGGPRDLAALRDGFFAARALVETLRAAENLPGELAQACAAAGALDPLVP 447 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 + L S L+D LP +RDGGF+ DA LDE R+LRD +++++A+LQ +Y + ++ LK Sbjct: 448 QKLQSALADALPLNRRDGGFVAPDFDAGLDELRALRDDTRKVVAALQARYCDLADMRQLK 507 Query: 493 IKHNNNLGYFIEVTSSSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 +KHNN LG+++E + +LK ++ FIHRQTM+ RF+T EL +L+ +I+ A Sbjct: 508 LKHNNFLGFYLEAPQAQGEKLLKPPFDAM--FIHRQTMAGAMRFSTPELSELDVKISTAA 565 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + AL+ EL F+ L+ ++ Q E++ A+ +A ID + LA LA + + RP +D S Sbjct: 566 DQALVRELSIFDELAATLLAQGEAIKRAAAALACIDAAAGLAELAADCGWTRPEVDGSLK 625 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 F ++ GRHP+VE L++ + PF+ANDCDLS ++ G++ ++TGPNM GKST+LRQNA Sbjct: 626 FHIEGGRHPVVEAALRRGGA-PFVANDCDLSGLAEEG-GRIAVVTGPNMAGKSTYLRQNA 683 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LI ++AQ+GS+VPA AHIG+VD+LFSRVG++D+LA GRSTFMVEM+ETA+ILN A +S Sbjct: 684 LIAVLAQIGSFVPARRAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNSARARS 743 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 VILDEIGRGTAT DGLSIAWA +E+LHE NR R L ATHFHELT L K L R N T++ Sbjct: 744 LVILDEIGRGTATFDGLSIAWAVMEHLHEVNRSRALFATHFHELTQLGKRLARIDNLTVR 803 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK--- 848 VS+ +IFLH++I G AD SYG+QV KLAGLP V++RA +L FE + + Sbjct: 804 VSEWKGDVIFLHEIIAGAADQSYGVQVAKLAGLPAQVVARARLLLSEFEAAERMSSRDRL 863 Query: 849 --DMRLY---YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 D+ L+ Y + + + + +N DE+SP AL+ LY +K Sbjct: 864 VADLPLFSASYVKAPEPAEIAHGGGSADALGAALDAVNPDELSPRAALEELYRLK 918 >gi|163797112|ref|ZP_02191067.1| MutS 1 protein [alpha proteobacterium BAL199] gi|159177628|gb|EDP62181.1| MutS 1 protein [alpha proteobacterium BAL199] Length = 904 Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/888 (46%), Positives = 579/888 (65%), Gaps = 28/888 (3%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 L +PM+ Q+ +K +PD L+FYRMGDFYE+FF+DA++A++ L ITLT+RG+H G+ I Sbjct: 30 LSGLSPMLTQFFRVKQEHPDCLLFYRMGDFYEMFFEDAVVAAQALDITLTRRGQHQGEPI 89 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H A Y+ +LI+ GHR+A+CEQIE P EAKKRG KS+VRR VVR+VTPGTLTE Sbjct: 90 PMCGVPHHAAEGYLARLIRQGHRVAVCEQIEDPAEAKKRGGKSVVRRAVVRIVTPGTLTE 149 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 D LL +NYL A++ +AW+D+STG F+ + L + + R+ P E++ E Sbjct: 150 DSLLDARRNNYLAALSEAGGALGLAWVDMSTGDFQAQPVDARGLEAALARLAPAELLLPE 209 Query: 202 K---ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + + + A+++S VA A P FD R+ Y ++ +D FG+F + E Sbjct: 210 RLENQPALADWRS-------VAAALPGSRFDSENGRRRLEALYGVSALDGFGTFGRAELG 262 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA A + Y++ TQ P +G R + ID+A R NLE+ RTL+G R+ S+L + Sbjct: 263 AAGALVDYLELTQKGKLPRLGALRRWSPGGLMEIDAATRRNLELTRTLTGERKGSVLAVL 322 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D ++TGAG RL A R+A+PLTD I+ RLD++ FF+++ + +++IL+S PDV R+L Sbjct: 323 DRTVTGAGARLLAARLAAPLTDPVAIDRRLDAVTFFVESSRSRSDLREILRSIPDVDRAL 382 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN----DLPEELRGAVEKLKKLPQSLEKT 434 SRL + RG P+D+A IRD + + + P+ + A+E+L + ++L Sbjct: 383 SRLALERGGPRDVAAIRDALAETTAVRAAVAGSVALTATPDAVVEALEELGEH-EALVAM 441 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L L+ DLP RDGGF+ G + LD R+LRD+S+R+IA+LQ +YA E+ + +LK+K Sbjct: 442 LGRALAVDLPLLARDGGFVAAGYEPELDRLRALRDESRRLIAALQARYAAESGVASLKVK 501 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 HNN LGYF+EVT++ A L +D FIHRQTM+N RF+T+EL +LE ++ A + A Sbjct: 502 HNNVLGYFVEVTAAHAD----KLMGRDGFIHRQTMANAVRFSTVELGELEREVSTAADKA 557 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L +E E F L A++E++ + A+ +A +D+S ALA LA +++CRP +D+ F + Sbjct: 558 LALEQEVFRTLVAAVLERAGPIGMAAAALARLDVSAALAELAASRDWCRPTVDDGFGFEI 617 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 + GRHP+VE TL + S F+ANDC L+ P D+ +WL+TGPNM GKSTFLRQNALI Sbjct: 618 EAGRHPVVEATLPEGPSA-FVANDCRLT-PEDR----VWLVTGPNMAGKSTFLRQNALIA 671 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++AQ GSYVP + A IG+VD+LFSRVG+AD+LA GRSTFMVEM+ETA+ILN A ++ VI Sbjct: 672 VLAQAGSYVPCARASIGVVDRLFSRVGAADDLARGRSTFMVEMVETAAILNLAGPRALVI 731 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDEIGRGTAT DGLSIAWAT+E LHE+NRCR L ATH+HELT L+ L T+ V + Sbjct: 732 LDEIGRGTATYDGLSIAWATVESLHESNRCRALFATHYHELTALADRLSALSCRTMAVKE 791 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH-NQKDMRLY 853 ++FLH+VI G AD SYGI V KLAGLP V++RA ++L E +D+ Sbjct: 792 WKGDVVFLHEVIAGAADRSYGIHVAKLAGLPAAVVARAEEVLHRLESGEQGPAARDLMDD 851 Query: 854 YPEIQTKE--SKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 P SK E + +N DE++P AL+TLYA+KA Sbjct: 852 LPLFSAARPVSKAAGPTGPSPVEEALGAVNPDELTPRQALETLYALKA 899 >gi|161170281|gb|ABX59251.1| mismatch repair ATPase MutS family [uncultured marine bacterium EB000_55B11] gi|297183809|gb|ADI19932.1| hypothetical protein [uncultured marine bacterium EB000_55B11] Length = 870 Score = 768 bits (1982), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/886 (46%), Positives = 576/886 (65%), Gaps = 31/886 (3%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM Q++EIKS P++L+FYRMGDFYELFFDDA+ A+ L I+LTKRGKHLG DIPMCGVP Sbjct: 1 MMAQFLEIKSEYPNALLFYRMGDFYELFFDDAVAAAAALDISLTKRGKHLGNDIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H+A +Y+ LI+ G R+A+CEQ+E+P EAK RG+KS+V+R VVRLVT GTLTED LLS Sbjct: 61 HHSAENYLLTLIRKGFRVAVCEQLETPAEAKARGSKSVVKRGVVRLVTSGTLTEDSLLSA 120 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHA 207 +SNYL A + +R AIAW+D+STG + + +++P E++ S+ ++ Sbjct: 121 RESNYLCAFSILRKSSAIAWVDVSTGDLHVQNCPQVSYGPMLAQLNPAEVLISDT--NYD 178 Query: 208 EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYI 267 +K G + FD + + R+ D++ + ++D FG+F++ E +A A I Y+ Sbjct: 179 SFKDQTSEFGTTLTSLSPASFDSTSNTRRLCDFFKVQSLDGFGTFTRAEISALGAIIDYL 238 Query: 268 KKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGG 327 + TQ P + P +E+++ + ID++ R NLE+ TLSGS+ SLL ID ++TG G Sbjct: 239 EITQKGKLPALKLPIKENLEDFVQIDTSTRRNLELTHTLSGSKNGSLLDVIDRTVTGPGA 298 Query: 328 RLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGE 387 RL +R++SP T I+ RLD+I + N L IQ +L+ + D+ R+ SR+ + RG Sbjct: 299 RLLEKRLSSPSTCLNTISLRLDAIEAYKPNNSLREEIQNVLRQTSDMERAFSRISLDRGG 358 Query: 388 PKDIAVIRDGI-------RSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 P+D IR+ + RS +++ + +KN + L+G E + L + Sbjct: 359 PRDFIAIRNSLKKGQDLSRSALDLXAVLIKN-ARQNLKGNEEIIH--------ILDXVFD 409 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D+ P RDGGF+R G + LDE + LRD +++I+S+Q + T I +LKIK+NN LG Sbjct: 410 DNSPLLARDGGFVRSGFNEDLDEIKRLRDDGRKVISSMQTDFLNLTGITSLKIKYNNVLG 469 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 YFIE ++ A + D S FIHRQT +N RFTT+EL ++E +I NA AL +ELE Sbjct: 470 YFIETPATHAKKMLSDAFSS-TFIHRQTTANAIRFTTIELSEIETKILNAGGKALSLELE 528 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F+ IIE SE + NA++ +A ID++IALA +A +N+CRP +D S F + GRHP Sbjct: 529 IFDQTKLKIIEFSERILNAAKALAEIDLTIALADIAMSENWCRPKLDKSRKFKITAGRHP 588 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE L++ +S FIAN+CDLS + + +WLLTGPNM GKSTFLRQNA+I +MAQ+G Sbjct: 589 VVEAALQKSASGVFIANNCDLSAGQNGDK-PIWLLTGPNMAGKSTFLRQNAIIALMAQIG 647 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA A IG + +LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA + VILDEIGR Sbjct: 648 SFVPAESAEIGXITQLFSRVGASDDLARGRSTFMVEMVETAAILNQAGENALVILDEIGR 707 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DGLSIAWAT+E LH N CR L ATH+HELT L+++L+ NAT+ V + II Sbjct: 708 GTATYDGLSIAWATLENLHNINNCRALFATHYHELTSLTENLEGLMNATVSVKEWKGDII 767 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ----KDMRLYYPE 856 FLH+V G AD SYG+QV KLAG+P TVI RA ++L EKL + +Q K + P Sbjct: 768 FLHEVKKGAADRSYGVQVAKLAGIPQTVIRRATEVL---EKLENADQGGKTKAIINELPL 824 Query: 857 IQTKESKNNLSK--NDKLFVEKIKCLNLDEMSPLTALKTLYAVKAW 900 T + NN+ K E+IK ++ DE++P AL +Y +K++ Sbjct: 825 FNT--NPNNMMKPEGSSQIEEQIKDIHPDELTPKDALALIYKLKSF 868 >gi|23016472|ref|ZP_00056227.1| COG0249: Mismatch repair ATPase (MutS family) [Magnetospirillum magnetotacticum MS-1] Length = 883 Score = 766 bits (1977), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/881 (45%), Positives = 559/881 (63%), Gaps = 19/881 (2%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM QY+ IK +PD L+FYRMGDFYELFFDDA+ AS L I LTKRGKH G DIPMC Sbjct: 12 ATPMMAQYLAIKHAHPDCLLFYRMGDFYELFFDDAVKASAALDIALTKRGKHAGDDIPMC 71 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVPV Y+ KL++ G ++AI EQ+E P EAKKRG+KS+V R+VVR++T GTLTED L Sbjct: 72 GVPVRAYEAYLAKLVRSGFKVAIGEQMEDPAEAKKRGSKSVVARDVVRVITAGTLTEDTL 131 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 L NYL AVA + +AW+D+STG F + + L + + R++P E++ S++ L Sbjct: 132 LDARSHNYLAAVAEAQGTLGLAWVDVSTGDFAMQAISPKTLAAALARLEPGELLVSDRLL 191 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 +AE+ ++ NV P FD S R+ Y + +D FG+F++ E A A + Sbjct: 192 GNAEFHEVWAEWRNVVSPLPTARFDSENSRRRLEALYGVGALDGFGAFTRAELAAGGALV 251 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 Y++ TQ P + P+R + + ID+A R NLE+ TLSG R SLL TID ++TG Sbjct: 252 DYVELTQKGRLPRLSLPKRLAEGAVMEIDAATRRNLELTETLSGERRGSLLATIDRTVTG 311 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 AG RL A ++A+PLTD I RLD + FF+++ + + +++ LK PDV R+LSRL +G Sbjct: 312 AGARLLAAQLAAPLTDPQAIEYRLDMVGFFVEHESIRDQLRETLKRCPDVERALSRLSLG 371 Query: 385 RGEPKDIAVIRDGIRSGINILNLFLKN--DLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 RG P+D+A +RD ++ ++ L ++ D P + +L + L L+ L+ D Sbjct: 372 RGGPRDLANVRDALKEIPSLRTLVTQSHLDTPPGIGQCARELGE-HSGLVDRLTRALAPD 430 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 LP RDGGF+ G LDE +SL+ + K + LQ++YAEET + LKI HNN +GY Sbjct: 431 LPLNARDGGFIAQGFHEGLDELKSLKTEGKGALMRLQVRYAEETGVTALKISHNNIIGYH 490 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IEV+S A L + FIHRQTM+N R+TT +LI+L +IT A + AL +E+E Sbjct: 491 IEVSSKQADKLGEG------FIHRQTMANTARYTTTDLIELAGKITGADDRALALEMELL 544 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 L + ++ + A+ +A +D + AL +A + RP +D+ST F +K RHP+V Sbjct: 545 AELIGEVTAKAAEIALAASALAGLDCASALGEMASAARWSRPRVDDSTAFDIKGARHPVV 604 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 E L+ S PF+ANDCDL+ ++ +LWL+TGPNM GKSTFLRQNA+I I+AQMGS+ Sbjct: 605 EAALEAAHSGPFVANDCDLA-----DAQRLWLVTGPNMAGKSTFLRQNAVIAILAQMGSF 659 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA H+G+VD+LFSRVG+AD+LA GRSTFMVEM+ETA+ILNQA ++ VILDEIGRGT Sbjct: 660 VPAESVHMGVVDRLFSRVGAADDLARGRSTFMVEMVETAAILNQAGPRALVILDEIGRGT 719 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFL 802 AT DGLSIAWA +E+LHE NRCR L ATH+HELT L+ L ++V + ++FL Sbjct: 720 ATFDGLSIAWAVVEHLHEVNRCRALFATHYHELTRLTSRLSALSCHMMRVKEWQGDVVFL 779 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN-----QKDMRLYYPEI 857 H+V G AD SYGI V +LAGLP V++RA ++L EK + D+ L+ Sbjct: 780 HEVGAGAADRSYGIHVARLAGLPGAVLTRAEEVLGILEKSDQASGMARLADDLPLFAALA 839 Query: 858 QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + K + + E +K +N D++S AL +Y +K Sbjct: 840 KPKPVAASAAPQVSALEEALKAVNPDDLSARQALDLVYELK 880 >gi|163742621|ref|ZP_02150007.1| DNA mismatch repair protein [Phaeobacter gallaeciensis 2.10] gi|161384206|gb|EDQ08589.1| DNA mismatch repair protein [Phaeobacter gallaeciensis 2.10] Length = 871 Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/815 (48%), Positives = 545/815 (66%), Gaps = 8/815 (0%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY++IK+ PD+L+FYRMGDFYE+FFDDA+ A+ L I LTKRGKH G DIPMCGVP Sbjct: 1 MMAQYLDIKAQYPDALLFYRMGDFYEMFFDDAVNAAEALDIALTKRGKHDGNDIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 VH A Y+ LI+ G R+A+ EQ+ESP EAKKRG+KS+V+R+VVRLVTPGT+TED LL Sbjct: 61 VHAAEGYLLTLIRKGFRVAVGEQLESPAEAKKRGSKSVVKRDVVRLVTPGTITEDSLLEA 120 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHA 207 N+L A +R + A+AW DISTG F + R+ ++ R+ P E+I + + Sbjct: 121 RRHNFLTAYCELRDQAALAWADISTGAFHVMPVASVRVSPELARLAPSELIVPDGP-ALD 179 Query: 208 EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYI 267 + +++ E FD + +E RI D + ++T++++GSFS+ E +A A I Y+ Sbjct: 180 QLRTIAEDHQIPVTPLAKSSFDSTAAEKRICDLFKVSTLESYGSFSRAEISAMGAVIDYL 239 Query: 268 KKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGG 327 TQ P + P++E + ID+A R +LE+ R L+G R SLL +D ++T AGG Sbjct: 240 DITQKGKLPLLQPPQQEAEDRVVQIDAATRRSLELTRALTGGRGGSLLAVVDRTVTPAGG 299 Query: 328 RLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGE 387 RL +R++SP + I RL +++F + L ++ L+ +PD+ R+LSRL + RG Sbjct: 300 RLLEQRLSSPSRNLDVIRARLTALDFVVGQTQLAQSLRTALRKTPDLDRALSRLALDRGG 359 Query: 388 PKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFK 447 P+D+A +R+ + I +L K D+P L A L L ++++++ P Sbjct: 360 PRDLAAVRNTLIQAEAISDLCNKADMPALLEQARSGLTGFDALLPLLDAALIAEP-PLLA 418 Query: 448 RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTS 507 RDGGF+ +G D LDE R+LRD+ + +IA+LQ KY++ T I +LKIKHNN LGYFIE T+ Sbjct: 419 RDGGFIAEGYDRELDEARTLRDEGRSVIAALQKKYSDHTGINSLKIKHNNVLGYFIETTA 478 Query: 508 SSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILS 566 + A +L L + +IHRQT +N RFTT+EL ++E RI NA N AL IE + LS Sbjct: 479 THAEKMLSAPL--SETYIHRQTTANQVRFTTVELSEIETRILNAGNLALEIEKRLYTRLS 536 Query: 567 NAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTL 626 +AI+ + L+ A++ +A +D+ ALA LA +N+ P +DNS F + GRHP+VE+ L Sbjct: 537 DAILADAALLNAAARGLAELDLITALADLALGENWSCPTVDNSREFNISGGRHPVVEQAL 596 Query: 627 KQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPAS 686 +QQ F+ANDCDL+ +WLLTGPNM GKSTFLRQNALI I+AQMGSYVPA Sbjct: 597 RQQGGSSFVANDCDLTA---DTGAAIWLLTGPNMAGKSTFLRQNALIAILAQMGSYVPAD 653 Query: 687 YAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLD 746 AHIG++ +LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA +++ VILDEIGRGTAT D Sbjct: 654 SAHIGLISQLFSRVGASDDLARGRSTFMVEMVETAAILNQADDRALVILDEIGRGTATYD 713 Query: 747 GLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVI 806 GLSIAWAT+E+LHE NR R L ATH+HELT L+ L NAT+ V + +IFLH+V Sbjct: 714 GLSIAWATLEHLHEVNRARALFATHYHELTQLAGKLPGVDNATVSVKEWEGEVIFLHEVK 773 Query: 807 PGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 G AD SYG+QV +LAGLP +V++RA D+L E+ Sbjct: 774 KGAADRSYGVQVAQLAGLPGSVVARARDVLDMLEE 808 >gi|296444520|ref|ZP_06886485.1| DNA mismatch repair protein MutS [Methylosinus trichosporium OB3b] gi|296258167|gb|EFH05229.1| DNA mismatch repair protein MutS [Methylosinus trichosporium OB3b] Length = 872 Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/882 (47%), Positives = 569/882 (64%), Gaps = 26/882 (2%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QYIEIKS NPD L+FYRMGDFYELFF DA ASR LGI LTKRGKH G DIPMCGVP Sbjct: 1 MMAQYIEIKSANPDCLLFYRMGDFYELFFTDAEAASRALGIMLTKRGKHQGHDIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 V A+ Y+QKLI +GHR+A+CEQ+E P EA+KRG KS+VRR+VVRLVTPGT+TE+ LL P Sbjct: 61 VERADDYLQKLIALGHRVAVCEQLEDPAEARKRGGKSVVRRDVVRLVTPGTITEETLLDP 120 Query: 148 TDSNYLMAVARIRT-----EWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK 202 +N A+ARIR + A +DISTG F + + L ++++R++PREI+ +E Sbjct: 121 ARANAFAALARIRAADGGWRYGFACVDISTGAFDVGEAGETELTAELVRLEPREIVAAEA 180 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 + A +L + + S +E R+ D+Y + T++ G+ S+ E AAAA Sbjct: 181 ICAEARLAALLAEIAPTTPLGRDAGGGES-AERRLLDFYGVATLEGLGALSEAEIAAAAA 239 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 AI Y+++TQ KP + P L ID+A R+NLE+ RTL G RE SLL TID ++ Sbjct: 240 AILYVERTQKGKKPALRPPSSLRRSRALEIDAATRANLELTRTLKGEREGSLLATIDLTM 299 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T AG R AER+A+P TD I RLD++ FF+ P L ++ +L +PD+ R+LSRL Sbjct: 300 TPAGARALAERVAAPATDPALIGERLDAVAFFVDAPDLRARLRALLARAPDLARALSRLA 359 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 + RG P+D+ IR + S +I + F N P + V L + LE+ +++ L D Sbjct: 360 LQRGGPRDLGNIRAALTSARDIESCFAGN-APALVAQEVAALTQADAQLEQAIAARLVVD 418 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P KR G F+ G D +LDE R LRD+S+R+IASLQ KY E + K LKIKHN+ LG+F Sbjct: 419 PPLDKRAGNFIARGVDETLDEARDLRDESRRVIASLQQKYVELAETKQLKIKHNHFLGFF 478 Query: 503 IEVTSSSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 IEV + +L+ ++ F HRQTM + RF+T EL++LE +I +A + A EL Sbjct: 479 IEVPQAQGERLLRAPFDAT--FTHRQTMQDAMRFSTRELVELEAKIASAADRAQERELAL 536 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 ++ L ++E+++ L +Q A +D+ ALA LA +++ RP +D+S +F + GRHP+ Sbjct: 537 YDELCARVLEKAQELQRLAQAFAALDVFAALAELAVSRDWTRPHVDSSLDFEIVGGRHPV 596 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE L + + F NDCDL D +GK+ ++TGPNM GKST+LRQNALI I+AQ GS Sbjct: 597 VEAALHAKG-EVFAVNDCDL---GDARAGKIAMVTGPNMAGKSTYLRQNALIAILAQAGS 652 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 YVPA A +G VD+LFSRVG+AD+LA GRSTFMVEM+ETA+ILN A +SFVILDEIGRG Sbjct: 653 YVPAQRARVGAVDRLFSRVGAADDLARGRSTFMVEMVETAAILNCAGPRSFVILDEIGRG 712 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 TAT DGLSIAWATIE+LHE NR R L ATHFHELT L+K L R N T++V D ++F Sbjct: 713 TATFDGLSIAWATIEHLHEINRSRALFATHFHELTQLTKRLPRLVNLTMKVKDHAGEVVF 772 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ-----KDMRLYYPE 856 LH+V G AD SYG+ V +LAGLP +V++RA+ IL E D+ L+ Sbjct: 773 LHEVTKGAADRSYGVHVAELAGLPASVVARAHAILAQLEAADRRAPVEKLIDDLPLFAHV 832 Query: 857 IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 Q+ +K+ L E + ++ D ++P AL LY +K Sbjct: 833 AQSAPAKDALH-------EALAAIDPDALTPREALAALYELK 867 >gi|163737983|ref|ZP_02145399.1| DNA mismatch repair protein MutS [Phaeobacter gallaeciensis BS107] gi|161388599|gb|EDQ12952.1| DNA mismatch repair protein MutS [Phaeobacter gallaeciensis BS107] Length = 871 Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/815 (48%), Positives = 548/815 (67%), Gaps = 8/815 (0%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY++IK+ PD+L+FYRMGDFYE+FFDDA+ A+ L I LTKRGKH G DIPMCGVP Sbjct: 1 MMAQYLDIKAQYPDALLFYRMGDFYEMFFDDAVNAAEALDIALTKRGKHDGNDIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 VH A Y+ LI+ G R+A+ EQ+ESP EAKKRG+KS+V+R+VVRLVTPGT+TED LL Sbjct: 61 VHAAEGYLLTLIRKGFRVAVGEQLESPAEAKKRGSKSVVKRDVVRLVTPGTITEDSLLEA 120 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHA 207 N+L A +R + A+AW DISTG F + R+ ++ R+ P E+I + + Sbjct: 121 RRHNFLTAYCELRDQAALAWADISTGAFHVMPVASVRVSPELARLAPSELIVPDGP-ALD 179 Query: 208 EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYI 267 + +++ E FD + +E RI D + ++T++++GSFS+ E +A A I Y+ Sbjct: 180 QLRTIAEDHQIPVTPLAKSSFDSTAAEKRICDLFKVSTLESYGSFSRAEISAMGAVIDYL 239 Query: 268 KKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGG 327 TQ P + P++E + ID+A R +LE+ R L+G R SLL +D ++T AGG Sbjct: 240 DITQKGKLPLLQPPQQEAEDRVVQIDAATRRSLELTRALTGGRGGSLLAVVDRTVTPAGG 299 Query: 328 RLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGE 387 RL +R++SP + I RL +++F + L ++ L+ +PD+ R+LSRL + RG Sbjct: 300 RLLEQRLSSPSRNLDVIRARLTALDFVVGQIQLAQSLRTALRKTPDLDRALSRLALDRGG 359 Query: 388 PKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFK 447 P+D+A +R+ + I +L + D+P L+ ++ L L ++++++ P Sbjct: 360 PRDLAAVRNTLIQSEAISDLCDRADMPALLQQSLSGLTGFDDLLPLLDAALIAEP-PLLA 418 Query: 448 RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTS 507 RDGGF+ +G D+ LDE R+LRD+ + +IA+LQ KY++ T I +LKIKHNN LGYFIE T+ Sbjct: 419 RDGGFIAEGYDSELDEARTLRDEGRSVIAALQKKYSDHTGINSLKIKHNNVLGYFIETTA 478 Query: 508 SSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILS 566 + A +L L + +IHRQT +N RFTT+EL ++E RI NA N AL IE + LS Sbjct: 479 THAEKMLSAPL--SETYIHRQTTANQVRFTTVELSEIETRILNAGNLALEIEKRLYTRLS 536 Query: 567 NAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTL 626 +AI+ + L+ A++ +A +D+ ALA LA +N+ P +DNS F + GRHP+VE+ L Sbjct: 537 DAILADAALLNAAARGLAELDLITALADLALGENWSCPTVDNSREFNISGGRHPVVEQAL 596 Query: 627 KQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPAS 686 +QQ F+ANDCDL+ +WLLTGPNM GKSTFLRQNALI I+AQMGSYVPA Sbjct: 597 RQQGGSSFVANDCDLTA---DTGAAIWLLTGPNMAGKSTFLRQNALIAILAQMGSYVPAD 653 Query: 687 YAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLD 746 AHIG++ +LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA +++ VILDEIGRGTAT D Sbjct: 654 SAHIGLISQLFSRVGASDDLARGRSTFMVEMVETAAILNQADDRALVILDEIGRGTATYD 713 Query: 747 GLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVI 806 GLSIAWAT+E+LHE NR R L ATH+HELT L+ L NAT+ V + +IFLH+V Sbjct: 714 GLSIAWATLEHLHEVNRARALFATHYHELTQLAGKLPGVDNATVSVKEWKGEVIFLHEVK 773 Query: 807 PGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 G AD SYG+QV +LAGLP +V++RA D+L E+ Sbjct: 774 KGAADRSYGVQVAQLAGLPGSVVARARDVLDMLEE 808 >gi|84500759|ref|ZP_00999008.1| DNA mismatch repair protein [Oceanicola batsensis HTCC2597] gi|84391712|gb|EAQ04044.1| DNA mismatch repair protein [Oceanicola batsensis HTCC2597] Length = 877 Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/884 (46%), Positives = 572/884 (64%), Gaps = 21/884 (2%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY+EIKS PD+L+FYRMGDFYELFFDDA+ AS L I LTKRGKHLG+DIPMCGVP Sbjct: 1 MMAQYLEIKSGYPDALLFYRMGDFYELFFDDAVAASEALDIALTKRGKHLGEDIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 VH A +Y+ LI+ G R+A+ EQ+ESP EAKKRG+KS+VRR+VVRLVTPGTLTE+ LL Sbjct: 61 VHAAENYLLTLIRKGFRVAVGEQMESPEEAKKRGSKSVVRRDVVRLVTPGTLTEESLLDA 120 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK-ELSH 206 N+L A A +R + A+AW+DISTG F + RL ++ R+ P E++ ++ E + Sbjct: 121 RRHNFLAAFAIVRDQGALAWVDISTGAFHVMPLPPVRLGPELARLGPSELLMPDEIERDY 180 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISY 266 AE S F G FD + + R+ + ++++D FG+FS+ E +A A + Y Sbjct: 181 AETVSDF---GTALTPMSRGSFDSTGAADRLCRLFRVSSLDAFGTFSRAEISAMGAIVDY 237 Query: 267 IKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAG 326 + TQ P + P+RE T+ ID+A R NLE+ +L+G R SLL ID ++T G Sbjct: 238 LDITQKGKLPLLRKPQREAADRTMQIDAATRRNLELTHSLAGGRAGSLLHAIDRTVTPGG 297 Query: 327 GRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRG 386 RL R++SP D I RL +++F + ++ L+ PD+ R+LSRL I R Sbjct: 298 ARLLERRLSSPSRDLATIRDRLAAVDFMVDQRQTARDLRDALRRVPDIDRALSRLAIDRA 357 Query: 387 EPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTF 446 P+D+A IR+G+ I L + +LP L A L+ L ++++++ P Sbjct: 358 GPRDLAAIRNGLGQAERIAGLLAQTELPALLADASTHLQGHDDLLALLDTALVAEP-PLL 416 Query: 447 KRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVT 506 RDGGF+ G D LDE R LRD+ + +IA +Q +YAE+T I ++KIKHNN LGYFIEVT Sbjct: 417 TRDGGFIAPGHDPDLDEARKLRDEGRGVIAQMQTQYAEQTGISSIKIKHNNVLGYFIEVT 476 Query: 507 SSSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEIL 565 ++ A +L + L + F HRQT +N RFTT EL ++E RI NA AL IE ++ L Sbjct: 477 ATHADKMLSEPL--NEVFKHRQTTANQLRFTTPELSEMETRIINAGGRALDIEKRLYDGL 534 Query: 566 SNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKT 625 I++++ L + ++ ++ +D++ ALA L+ +N+ RP +D+S + GRHP+VE++ Sbjct: 535 KAQILDRASELTDTARALSELDLATALADLSIAENWARPRVDDSRTLRIAGGRHPVVEQS 594 Query: 626 LKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPA 685 L+++ + PFIAND DLS + +WLLTGPNM GKSTFLRQ ALIV++AQMGS+VPA Sbjct: 595 LRKEGA-PFIANDADLSG----DPSMIWLLTGPNMAGKSTFLRQTALIVLLAQMGSHVPA 649 Query: 686 SYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATL 745 S A IG+V +LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA +++ VILDEIGRGTAT Sbjct: 650 SEAEIGVVSQLFSRVGASDDLARGRSTFMVEMVETAAILNQADDRALVILDEIGRGTATY 709 Query: 746 DGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKV 805 DGLSIAWAT+E+LHE NR R L ATH+HE+T L+ L NAT+ V + + +IFLH+V Sbjct: 710 DGLSIAWATLEHLHEVNRSRALFATHYHEMTALAGKLPGVENATVAVREHDGDVIFLHEV 769 Query: 806 IPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-------DMRLYYPEIQ 858 I G AD SYG+QV +LAGLP+ V++RA ++L EK + D+ L+ Sbjct: 770 IRGAADRSYGVQVARLAGLPDAVVARAREVLDALEKGDREGGQKPKAIIDDLPLFAAAAP 829 Query: 859 TKESKNNLSKNDKLFVEKI-KCLNLDEMSPLTALKTLYAVKAWT 901 E+ + V I + + DE+SP AL +Y +KA T Sbjct: 830 APETGIETIPPEYAEVATILEATHPDELSPREALDLIYRLKAST 873 >gi|126724515|ref|ZP_01740358.1| DNA mismatch repair protein [Rhodobacterales bacterium HTCC2150] gi|126705679|gb|EBA04769.1| DNA mismatch repair protein [Rhodobacterales bacterium HTCC2150] Length = 890 Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/884 (46%), Positives = 558/884 (63%), Gaps = 20/884 (2%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S TPMM Q++ IK PD+L+FYRMGDFYELFFDDA+ A+ L ITLTKRG+H+G+DI M Sbjct: 15 SVTPMMAQFLSIKVDYPDALLFYRMGDFYELFFDDAVAAAAALDITLTKRGQHMGEDISM 74 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVP H A Y+ LI+ G R+A+CEQ+ESP EAKKRG KS+VRR VVRLVTPGTLTED Sbjct: 75 CGVPHHAAEGYLLTLIRKGFRVAVCEQMESPAEAKKRGAKSVVRREVVRLVTPGTLTEDS 134 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 LL NYL A A +R A+AW+DISTG F + +RL ++ R+ P EI+ + + Sbjct: 135 LLDARRHNYLAAFANVRDASALAWVDISTGEFHVMPCGLERLSPELARLAPSEIVLIDDD 194 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 E L E +G FD + + R+ + +N+ T+++FG F++ + Sbjct: 195 AD--ELFPLVEEMGVTPAFLSRASFDSASATKRLCELFNVKTLESFGQFTRADLAVLGGI 252 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 + Y++ TQ N P I P +E + + ID+A R NLE+ ++LSG RE SLL ID +I+ Sbjct: 253 VEYLELTQKGNLPLIRPPVKELDKGAMQIDAATRRNLELTKSLSGGREGSLLSAIDRTIS 312 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 AG RL RI++P D IN R D+I + L ++ L+S PD+ R+LSRL + Sbjct: 313 AAGARLLERRISAPTLDLDIINARQDAIETLLNQTDLAVNLRTSLRSVPDLDRALSRLSV 372 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 R P+D+ IR+G+ I +L K L G K L L + + + Sbjct: 373 DRAGPRDLTAIRNGLEQAKEISSLISKT-ADHGLLGEAAKALLGHDDLLNLLDAAMIAEP 431 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P RDGGF+ G A LDE R+LRD+ + +IA LQ YA++T I LKIKHNN LGYFI Sbjct: 432 PLLTRDGGFIASGYHAELDEARTLRDEGRGVIAGLQSDYAKQTGISALKIKHNNVLGYFI 491 Query: 504 EVTSSSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 E + A +L L + FIHRQT +N RFTT+ L ++E +I N+ N AL IE F Sbjct: 492 ETPAGHAQKMLATPL--SETFIHRQTTANAVRFTTVPLSEMETKILNSGNRALEIEKSLF 549 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 L+ A++ Q L A++ +A +D+S A A LA + N+ RP +DNS F ++ GRHP+V Sbjct: 550 VSLTQAVLAQYGPLGAAARALAEVDVSAAFADLAADHNWVRPKVDNSRKFDIEGGRHPVV 609 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 E+ L Q PF+AN+CDLS + +WLLTGPNM GKSTFLRQNALI ++AQ G Y Sbjct: 610 ERALLAQGGAPFVANNCDLS--DGAKGAHVWLLTGPNMAGKSTFLRQNALIALLAQAGGY 667 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA+ AHIG+V +LFSRVG+AD+LA GRSTFMVEM+ETA+ILNQA +++ VILDEIGRGT Sbjct: 668 VPATSAHIGLVSQLFSRVGAADDLARGRSTFMVEMVETAAILNQADDRALVILDEIGRGT 727 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFL 802 AT DGLSIAWAT+E+LH+ N CR L ATH+HE+T LS L+ NAT+ V + +IFL Sbjct: 728 ATYDGLSIAWATLEHLHDANSCRALFATHYHEMTALSGKLQGVSNATVTVREWEGDVIFL 787 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRA---YDILKTFEKLYHHNQK---DMRLYYPE 856 H+V G AD SYG+QV KLAGLP+ V+ RA D L+ E+ H N+ D+ L+ Sbjct: 788 HEVKKGAADRSYGVQVAKLAGLPDAVVERARVVLDKLEQGEREGHKNRALIDDLPLFSAT 847 Query: 857 IQTKESKNNLSKNDKLFVE-KIKCLNLDEMSPLTALKTLYAVKA 899 K +S+ VE ++ + D ++PL AL +Y +K Sbjct: 848 PPPVSQKPKVSE-----VEVRLDEIQPDGLTPLEALSLIYELKG 886 >gi|89052700|ref|YP_508151.1| DNA mismatch repair protein MutS [Jannaschia sp. CCS1] gi|122499785|sp|Q28VY6|MUTS_JANSC RecName: Full=DNA mismatch repair protein mutS gi|88862249|gb|ABD53126.1| DNA mismatch repair protein MutS [Jannaschia sp. CCS1] Length = 877 Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/878 (46%), Positives = 563/878 (64%), Gaps = 13/878 (1%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY+EIK+ +PD+L+FYRMGDFYE+FFDDA+ A+ L I LTKRGKH G+DI MCG Sbjct: 6 TPMMAQYLEIKAAHPDALLFYRMGDFYEMFFDDAVAAAEALDIALTKRGKHNGEDIAMCG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRG-NKSLVRRNVVRLVTPGTLTEDQL 144 VP H+A Y+ LI+ G R+ ICEQ+E P AKKRG +K++VRR VVRLVTPGTLTED L Sbjct: 66 VPAHSAESYLLTLIRKGFRVGICEQMEDPATAKKRGGSKAVVRREVVRLVTPGTLTEDTL 125 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 L NYL + A +R E A+AW DISTG F++ RL ++ R+ P+E++ S+ L Sbjct: 126 LEARRHNYLASYADVRGEGALAWCDISTGDFRVMRCPAVRLGPELARLSPKEVLVSDG-L 184 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 A ++ E V P F D + +E R+A ++++T++ FG+F++ E +A A I Sbjct: 185 DIARQDAIIELGAAVTPLSPGSF-DSASAEQRLAGLFSVSTLEGFGNFARAEVSAMGALI 243 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 Y++ TQ P + P ++ L +D+A R NLE+ + LSG R SLL +D + T Sbjct: 244 DYLELTQKGALPLLRAPRQQSADRLLQLDTATRRNLELTQALSGGRANSLLSVLDRTQTA 303 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 G RL R+ P TD I R +S++FF + ++ + ++ L+ PD+ R+LSRL + Sbjct: 304 GGARLLQRRLTGPSTDLDVIRARHESVSFFFSDTLIRDDLEAELRRIPDLDRALSRLALD 363 Query: 385 RGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLP 444 RG P+D++ IRDG+ + + DLP L GAV+ L+ + L L L + P Sbjct: 364 RGGPRDLSAIRDGLSGAARLSDKLKIVDLPPLLEGAVQDLQGHDE-LSALLDEALVAEPP 422 Query: 445 TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIE 504 RDGG + G A LDE R+LRD+ + +IA++Q Y E T + LKIKHNN LGYFIE Sbjct: 423 VQLRDGGLIAPGYHAELDEARTLRDEGRSVIATMQADYVEATGVNALKIKHNNVLGYFIE 482 Query: 505 VTSSSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 T++ A +L L +RFIHRQT +N RFTT+EL +LE +I NA N AL IE F+ Sbjct: 483 TTATHAEKMLNPPL--SERFIHRQTTANQVRFTTVELSELETKILNAGNRALEIERVLFQ 540 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L +AI+ + + A++ +A +D+S ALA A+E ++ +P + F+++ RHP+VE Sbjct: 541 SLRDAILNCQDQIGQAARGLAELDLSAALARRAREGDWTQPEMTEDRAFMIEGARHPVVE 600 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 L + + F+ANDCDLS + + LLTGPNM GKST+LRQNAL+VIMAQ GS+V Sbjct: 601 AALAKDGTS-FVANDCDLSA---EGGAAITLLTGPNMAGKSTYLRQNALLVIMAQTGSFV 656 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA A IG+V ++FSRVG++D+LA GRSTFMVEM+ETA+ILNQA +++ VILDEIGRGTA Sbjct: 657 PAKCAKIGLVSQVFSRVGASDDLARGRSTFMVEMVETATILNQADDRALVILDEIGRGTA 716 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DGLSIAWAT+E+LHETN+CR L ATH+HE+T L+ L NAT+ V + +IFLH Sbjct: 717 TYDGLSIAWATLEHLHETNQCRALFATHYHEMTSLASKLDGLTNATVAVKEWEGEVIFLH 776 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY--YPEIQTKE 861 +V G AD SYG+QV KLAGLP+ VI+RA +L EK + + P Sbjct: 777 EVREGAADRSYGVQVAKLAGLPDAVIARAQVVLDALEKGEREGGERKAVIDDLPLFAMMP 836 Query: 862 SKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + L EK++ ++ DEM+ AL LY +KA Sbjct: 837 APAPAPSAPSLVEEKLRAVHPDEMTAREALNLLYELKA 874 >gi|310817153|ref|YP_003965117.1| DNA mismatch repair protein MutS, putative [Ketogulonicigenium vulgare Y25] gi|308755888|gb|ADO43817.1| DNA mismatch repair protein MutS, putative [Ketogulonicigenium vulgare Y25] Length = 878 Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/887 (46%), Positives = 567/887 (63%), Gaps = 20/887 (2%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + +TPMM QY+ IK+ NPD+L+FYRMGDFYE+FFDDAL A+ L I LTKRGKH+G+DI Sbjct: 7 VDGATPMMAQYLTIKAENPDALLFYRMGDFYEMFFDDALAAAAALDIALTKRGKHMGEDI 66 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 MCGVPVH A Y+ LI+ G R+A+ EQ+E P EAKKRG+KS+V R VVRLVTPGTLTE Sbjct: 67 AMCGVPVHAAEGYLLTLIRKGFRVAVAEQMEDPAEAKKRGSKSVVHRAVVRLVTPGTLTE 126 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 D LL NYL A A +R E A+AW+DISTG + RL ++ R+ PRE++ ++ Sbjct: 127 DSLLEARRHNYLAAYAEVRDEGALAWVDISTGALVVMECPPARLAPELARLSPREMLLAD 186 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 S +S T+ + A FD + + R+ D YN+ ++D FGSF++ E A Sbjct: 187 GSASDEIARSAGATVTTLGRAS----FDSTNAAKRLCDLYNVASLDAFGSFTRAEIAAMG 242 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 A YI TQ P I P RE + S + ID+ R +LE+ + G R SLL ID + Sbjct: 243 AIADYIAITQKGKLPLIRPPVREGLNSLMQIDATTRKSLELTQAQGGGRAGSLLDAIDRT 302 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T AG RL R+A+P I +RL+ + ++N +L ++ L+S D+ R+LSRL Sbjct: 303 QTAAGARLLERRLAAPSRHLPTIQSRLEVTGYLLENRMLAERLRDQLQSVHDIERALSRL 362 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 + RG P+D+A IR+ I I L + LP+ L A L L L + ++++ Sbjct: 363 ALERGGPRDMAAIRNTIAVAGAIAAL-PTDALPDGLAEAFAALGGLDDLLGLLDAGLVAE 421 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 P RDGGF+ G DA LD+TR LRD+ + ++ASLQ +YAE + +L+IKHNN LGY Sbjct: 422 P-PLLARDGGFVAGGYDAELDDTRRLRDEGRGVVASLQARYAETAGVSSLRIKHNNVLGY 480 Query: 502 FIEVTSSSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 FIE T++ A +L L + FIHRQT +N RFTTLEL +LE RI NA AL +E Sbjct: 481 FIETTATHAEKMLAPPL--NETFIHRQTTANQIRFTTLELSELETRILNAGGHALGLEKR 538 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 +++ AI++QS + S+ +A ID++ A A LA ++ RP +D+S F + GRHP Sbjct: 539 FYDMFRAAILDQSGPIGALSRALAQIDLACAQADLALALDWVRPQVDDSRAFAITGGRHP 598 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE+ L++ + +PF+AN CDLS +WLLTGPNM GKSTFLRQNALI I+AQMG Sbjct: 599 VVEQALRK-AGQPFVANSCDLS------QDSIWLLTGPNMAGKSTFLRQNALIAILAQMG 651 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 SYVPA AHIG+V ++FSRVG++D+LA GRSTFMVEM+ETA+ILNQA +++ V+LDEIGR Sbjct: 652 SYVPAESAHIGMVSQIFSRVGASDDLARGRSTFMVEMVETAAILNQADDRALVVLDEIGR 711 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DGLSIAWAT+E+L++ NRCR + ATH+HE+ L++ L NAT+ V + +I Sbjct: 712 GTATYDGLSIAWATLEHLNQVNRCRAIFATHYHEMAQLAQRLDGVANATVTVREWEGDVI 771 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY--YPEIQ 858 FLH+V G AD SYG+QV +LAGLP +V++RA +L+T E K L P Sbjct: 772 FLHEVRMGTADRSYGVQVARLAGLPASVVARARTVLETLEAGERTGDKPKALIDDLPLFA 831 Query: 859 TKESKNNLSKNDKLFVE-KIKCLNLDEMSPLTALKTLYAVKAWTLEK 904 + +K VE +++ ++ DE++P AL +Y ++ LEK Sbjct: 832 AIPAAPPPAKAKPSAVEDRLRGMSADELTPRAALDLVYELQGL-LEK 877 >gi|126734419|ref|ZP_01750166.1| DNA mismatch repair protein MutS, putative [Roseobacter sp. CCS2] gi|126717285|gb|EBA14149.1| DNA mismatch repair protein MutS, putative [Roseobacter sp. CCS2] Length = 878 Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/882 (45%), Positives = 557/882 (63%), Gaps = 23/882 (2%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 ++TPMM QY+EIK+ +PD+L+FYRMGDFYE+FFDDA+ A+ L I LTKRGKH +DIPM Sbjct: 7 TTTPMMAQYLEIKAEHPDALLFYRMGDFYEMFFDDAVAAAEALDIALTKRGKHDDQDIPM 66 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVP H A Y LI+ G R+A+CEQ+ESP EAKKRG K++V+R VVRLVTPGTLTED Sbjct: 67 CGVPHHAAEGYFLTLIRKGFRVAVCEQMESPTEAKKRGYKAVVKREVVRLVTPGTLTEDS 126 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 LL N+L A +R E A+AW+DISTG F + + +L ++ R+ PRE+I + Sbjct: 127 LLDARRHNFLAAFHMVRDEGALAWVDISTGAFHVMACSGAQLGPELARLTPREVIVVDG- 185 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + A++ + G FD + E R+ Y + ++D FGSF + E A +A Sbjct: 186 -NDADWAGIVSDSGATLTTLGAAAFDSTSGEKRLCSLYKVGSLDAFGSFGRAEVGAMSAV 244 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 Y+ TQ N P + P +E + + ID+A R +LE+ ++G ++ SLL ID + T Sbjct: 245 AEYLDITQRGNLPLLRPPVQEGQSAAMQIDAATRKSLELTHAMNGGKQGSLLHCIDRTAT 304 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 RL R+ASP ++ I RL+++++ ++ L I++ L+ D+ R+LSRL + Sbjct: 305 AGAARLLERRLASPSCNADVIAARLNAVSYLAEDTRLTEDIREALRGVHDLDRALSRLAL 364 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 RG P+D+A IR+ I L+ L DLP+ L A + L +L L L + Sbjct: 365 DRGGPRDMAAIRNTIGQARQ-LSERLPKDLPQILSDAADDLTG-HGTLLNLLDEALIAEP 422 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P RDGGF+ +A LDE R+LRD+ + +IA +Q ++ E + + +LKIKHNN LGYFI Sbjct: 423 PLLSRDGGFIAPEYNAELDEVRTLRDEGRSVIAGMQAEFIEASGVSSLKIKHNNVLGYFI 482 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 E T++ A + + FIHRQT +N RFTT+EL ++E RI NA AL IE + Sbjct: 483 ETTATHADKMMTP-PLNETFIHRQTTANQVRFTTVELSEIETRILNAGGRALEIEKRLYS 541 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L+ AII Q+ L ++ ++ ID+ ALA LA +N+ RP +D+S F + GRHP+VE Sbjct: 542 SLTEAIIAQAGPLGALARALSEIDLMAALAHLAMTENWVRPKVDDSRAFEISGGRHPVVE 601 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 L Q+ PFIANDC L+ +WLLTGPNM GKSTFLRQNAL+ I+AQMGS+V Sbjct: 602 AAL-QKDGTPFIANDCGLT------DAPIWLLTGPNMAGKSTFLRQNALLAILAQMGSFV 654 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA+ A+IGIV ++FSRVG++D+LA GRSTFMVEM+ETA+ILNQA +++ VILDEIGRGTA Sbjct: 655 PATEAYIGIVSQIFSRVGASDDLARGRSTFMVEMVETAAILNQADDRALVILDEIGRGTA 714 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DGLSIAWAT+E+LH+ NRCR L ATH+HE++ LS L NAT+ V + +IFLH Sbjct: 715 TYDGLSIAWATLEHLHDVNRCRALFATHYHEMSALSAKLDGVDNATVTVKEWEGDVIFLH 774 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN---QK----DMRLYYPE 856 +V G AD SYG+QV +LAGLP V+ RA +L EK QK D+ L+ Sbjct: 775 EVKRGTADRSYGVQVARLAGLPPVVVERAKVVLDALEKGEREGGGAQKAIIDDLPLFAAT 834 Query: 857 IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 K + SK + + +K + D+++P AL +Y ++ Sbjct: 835 PAPKPAAVKASKVE----DALKGVFPDDLTPKEALTLIYELR 872 >gi|209966168|ref|YP_002299083.1| DNA mismatch repair protein MutS [Rhodospirillum centenum SW] gi|209959634|gb|ACJ00271.1| DNA mismatch repair protein MutS [Rhodospirillum centenum SW] Length = 907 Score = 756 bits (1953), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/886 (46%), Positives = 564/886 (63%), Gaps = 18/886 (2%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY+EIK + D L+FYRMGDFYELFFDDA+ A+ L I LTKRG+HLG+DI MCG Sbjct: 24 TPMMAQYLEIKRQHADCLLFYRMGDFYELFFDDAVQAAAALDIALTKRGQHLGEDIAMCG 83 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH+ Y+ +LI+ G R+AICEQ E P EAKKRG+KS+VRR V+R+VTPGT+TED LL Sbjct: 84 VPVHSHEQYLSRLIRAGFRVAICEQTEDPAEAKKRGSKSVVRREVIRVVTPGTITEDGLL 143 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 +NYL A+A E +AW+D+STG + L + + R+ P E++ E+ Sbjct: 144 DSRANNYLAALAEAGGEVGLAWLDLSTGELTVQPVERAGLGAALARLAPGEVLLPERLSQ 203 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAIS 265 E L+ QP FD R+ Y + T+D FG+F + E AA A + Sbjct: 204 APELFELWAEWKQRLTVQPTPRFDSENGRQRLLALYGVGTLDAFGAFGRAEVAAAGALVD 263 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y++ TQ P + P R + ID A R NLE+ RTL+G R+ SLL ID +++GA Sbjct: 264 YVELTQKGRLPRLDRPRRLGAGQVMEIDPATRRNLELTRTLAGERKGSLLAAIDRTVSGA 323 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 G RL A + +PLT +I RLD + FF L ++ +L+ +PDV RSLSRL +GR Sbjct: 324 GARLLAAWLGAPLTVPAEIERRLDMVAFFAGEEFLRAGLRGLLRQTPDVERSLSRLTLGR 383 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKND---LPEELRGAVEKLKKLPQS-LEKTLSSMLSD 441 G P+D+A +R+ + + + L LP L A L + L + L+ L Sbjct: 384 GSPRDLAAVREALGAAAELRGRLLAGGLTPLPAGLAEAAAGLDGPGHAPLARRLAEALGP 443 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 +LP RDGGF+ G A+LDE LRD S+R IA LQ +YAE T I +LKI+HNN LGY Sbjct: 444 ELPLLARDGGFIARGYSATLDELVGLRDDSRRHIAGLQARYAERTGIASLKIRHNNVLGY 503 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IE T + A L + +++ FIHRQT++N RFTT+EL +LE +++ A AL +ELE Sbjct: 504 YIETTPTHADKLMQG-ANRETFIHRQTLANAVRFTTVELSELERKVSEAGERALALELEL 562 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 FE L A+ +++++ ++ +A +D++ ALA LA + +CRP++D S F ++ GRHP+ Sbjct: 563 FEELVRAVAAEADAIATTARALATLDVAAALAELAAARGWCRPVVDGSLEFRIEGGRHPV 622 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE+ L++Q++ PF+ANDCDLS +LWLLTGPNM GKSTFLRQNALI ++AQ GS Sbjct: 623 VEQALEEQAAGPFVANDCDLSPER-----RLWLLTGPNMAGKSTFLRQNALIAVLAQTGS 677 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA A IG+VDKLFSRVG+AD+LA GRSTFMVEM+ETA+ILNQAT +S VILDEIGRG Sbjct: 678 FVPARSARIGVVDKLFSRVGAADDLARGRSTFMVEMVETAAILNQATPRSLVILDEIGRG 737 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 TAT DGLSIAWA +E+LHE R RG+ ATH+HELT L+ L T+++ + ++F Sbjct: 738 TATFDGLSIAWACVEHLHEVRRSRGIFATHYHELTLLASKLPALSCHTMRIKEWQGDVVF 797 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN-----QKDMRLYYPE 856 LH+V PG AD SYGI V +LAGLP+ V++RA +L+ EK D+ L+ Sbjct: 798 LHEVAPGAADRSYGIHVARLAGLPDAVVARAGQVLELLEKGEQGGAVARLADDLPLFAAP 857 Query: 857 IQ--TKESKNNLSKNDKLFVE-KIKCLNLDEMSPLTALKTLYAVKA 899 ++ + VE ++ LN DE++P AL+ LY ++ Sbjct: 858 VRRAPDPAPAAAPPPAPSAVETALRTLNPDELTPRQALEELYRLRG 903 >gi|294679011|ref|YP_003579626.1| DNA mismatch repair protein MutS [Rhodobacter capsulatus SB 1003] gi|294477831|gb|ADE87219.1| DNA mismatch repair protein MutS [Rhodobacter capsulatus SB 1003] Length = 879 Score = 756 bits (1952), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/881 (46%), Positives = 557/881 (63%), Gaps = 13/881 (1%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 ++ TPMM QY+ IK NP +L+FYRMGDFYE+FFDDA+ A+ L I LTKRG HLG++IP Sbjct: 4 ETVTPMMAQYLAIKQANPGALLFYRMGDFYEMFFDDAVAAAAALDIALTKRGLHLGEEIP 63 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP+ A Y+ LI+ G R+AI EQ+E P EAKKRG+KS+VRR+VVRLVTPGTLTE+ Sbjct: 64 MCGVPILAAEGYLLTLIRKGFRVAIAEQLEDPAEAKKRGSKSVVRRDVVRLVTPGTLTEE 123 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK 202 LL NYL A A +R E A+AW DISTG F++ RL ++ R+ PRE++ SE Sbjct: 124 SLLEARRHNYLAAWAELRDEGALAWADISTGEFRVMPCPLARLGPELARLAPREVLVSEA 183 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 + A+ + L FD +E R+ D + + ++D FG+FS+ E +A A Sbjct: 184 K--EADCAGIVSDLRASLTPLARSSFDSQGAEKRLCDLFAVGSLDAFGAFSRAEISAMGA 241 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 + Y+ TQ P + P RE+ S + ID+A R NLE+ + LSG RE SLL ID ++ Sbjct: 242 LVDYLDLTQRGKLPLLARPLREEAGSLVQIDAATRRNLELTQALSGGREGSLLAAIDRTV 301 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T AG RL RI++P D +I+ R D++ F ++ ++ L+ PD+ R+LSRL Sbjct: 302 TAAGARLLERRISAPSRDLAQIHARHDAVRFLLEQGRFAEDLRDALRRCPDIDRALSRLA 361 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 + RG P+D+A IR+G+ I + P L A +L L L + L + Sbjct: 362 LDRGGPRDLAAIRNGLEQAGRIAERLAATEAPALLAEAGARLLG-HDDLVALLDAALVAE 420 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P RDGGF+ G + LD+TR LRD+ + +IA +Q Y ET I +LKIKHNN LGYF Sbjct: 421 PPLLARDGGFIATGYEPELDDTRQLRDEGRGVIARMQADYITETGISSLKIKHNNVLGYF 480 Query: 503 IEVTSSSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 IE TS+ A +L L + RFIHRQT +N RFTTL+L +LE RI NA N AL IE Sbjct: 481 IETTSTHAEKMLAPPLSA--RFIHRQTTANQVRFTTLDLSELETRILNAGNHALEIEKRL 538 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 ++ L AI+ + + ++ +A ID++ A A LA +++ P++D S F ++ GRHP+ Sbjct: 539 YDSLKGAILAAAGPISETARALAEIDLTAAFADLAAAEDWVEPMVDQSHAFEIEGGRHPV 598 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE LK+Q +PFIANDC L+ + +WLLTGPNM GKSTFLRQNALI ++AQ GS Sbjct: 599 VEAALKRQG-EPFIANDCALTS---GATPAIWLLTGPNMAGKSTFLRQNALIALLAQAGS 654 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA AHIG+V +LFSRVG+AD+LA GRSTFMVEM+ETA+ILNQA +++ VILDEIGRG Sbjct: 655 FVPARRAHIGLVSQLFSRVGAADDLARGRSTFMVEMVETAAILNQADDRALVILDEIGRG 714 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 TAT DGLSIAWA +E+LH NRCR L ATH+HE+T LS L NAT+ V + + +IF Sbjct: 715 TATYDGLSIAWAVLEHLHGVNRCRALFATHYHEMTALSAKLDGVENATVAVKEWHGEVIF 774 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL---YYPEIQ 858 LH+V G AD SYG+QV KLAGLP +V++RA +L EK K + Sbjct: 775 LHEVKKGAADRSYGVQVAKLAGLPESVVARARVVLDALEKGEREGGKKQAIIDDLPLFAL 834 Query: 859 TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 E+++ L+ DEM+P A+ LYA++A Sbjct: 835 APPPAPAAPPAKSAVEEQLRGLHPDEMTPREAMDALYALRA 875 >gi|114762206|ref|ZP_01441674.1| DNA mismatch repair protein [Pelagibaca bermudensis HTCC2601] gi|114545230|gb|EAU48233.1| DNA mismatch repair protein [Roseovarius sp. HTCC2601] Length = 874 Score = 754 bits (1947), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/878 (45%), Positives = 566/878 (64%), Gaps = 14/878 (1%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY+EIK+ +PD+L+FYRMGDFYELFFDDA A+ L I LTKRGKH G DIPMCGVP Sbjct: 1 MMAQYLEIKAGHPDALLFYRMGDFYELFFDDAAAAAEALDIALTKRGKHAGDDIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 VH A Y+ LI+ G R+A+CEQ+ESP EAKKRG+KS+V+R VVRLVTPGTLTE+ LL Sbjct: 61 VHAAEGYLLTLIRKGFRVAVCEQMESPAEAKKRGSKSVVKREVVRLVTPGTLTEESLLEA 120 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHA 207 N+L A+ ++R WA+AW DISTG F + R+ +++ R+ P E++ SE + Sbjct: 121 RRHNFLAALGKVRDAWALAWADISTGAFHVMPLGQARIGAELARLAPSELLVSEA--AEE 178 Query: 208 EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYI 267 E +++ LG FD + +E+R+ + + T+ FGSF + E A A + Y+ Sbjct: 179 ELRAVLGDLGIYPTVLGRASFDSAGAEARLCTLFGVQTLSGFGSFERAELAAMGALVDYL 238 Query: 268 KKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGG 327 TQ P + P+R+ L ID+A R NLE+ ++++G R+ SLL ID ++T G Sbjct: 239 DITQKGRLPLLRAPQRDAGSRLLQIDAATRRNLELTQSMNGGRQGSLLSVIDRTVTPGGA 298 Query: 328 RLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGE 387 RL R++SP + + I+ RLD++++ I+ P + ++ +L+ PD+ R+LSRL + RG Sbjct: 299 RLLERRVSSPSRELSVISARLDALDWGIETP-FASALRDLLRKVPDLDRALSRLGLDRGG 357 Query: 388 PKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFK 447 P+D+A +R+ + I + LP L + + L+ L ++++++ P Sbjct: 358 PRDLAAVRNALAQAEEIAQALDEAPLPALLATSRDALRGHEDLLSLLDAALVAEP-PLLA 416 Query: 448 RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTS 507 RDGGF+ G D +LDE R LRD+ + +IA++Q +YA++ + LKIKHNN LGYFIE T+ Sbjct: 417 RDGGFIAPGFDEALDEARKLRDEGRGVIAAMQAQYAQQAGVNALKIKHNNVLGYFIETTA 476 Query: 508 SSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSN 567 + A + + FIHRQT +N RFTT+EL +LE RI NA N AL IE + L + Sbjct: 477 THAEKMMSP-PLNETFIHRQTTANQVRFTTVELTELETRILNAGNEALDIEKRLYSSLRD 535 Query: 568 AIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLK 627 AI+ ++ +L ++ D+++ LA LA+ Q++CRP +D S F ++ GRHP+VE+ L+ Sbjct: 536 AILAEAPALSETGLALSEFDLALGLADLARAQDWCRPQVDESRAFAIEGGRHPVVERALQ 595 Query: 628 QQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASY 687 Q PFIANDC LS D S + LLTGPNM GKST+LRQNALI ++AQ+GSYVPA Sbjct: 596 AQGGSPFIANDCGLSAQGDAAS--VTLLTGPNMAGKSTYLRQNALIALLAQIGSYVPARS 653 Query: 688 AHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDG 747 A++G+V ++FSRVG++D+LA GRSTFMVEM+ETA+ILNQA +++ VILDEIGRGTAT DG Sbjct: 654 ANLGLVSQIFSRVGASDDLARGRSTFMVEMVETAAILNQADDRALVILDEIGRGTATYDG 713 Query: 748 LSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIP 807 LSIAWAT+E+LH NR RGL ATH+HELT L+ L+ NAT+ V + + +IFLH+V Sbjct: 714 LSIAWATLEHLHGVNRVRGLFATHYHELTVLAGKLEGVRNATVAVKEWDGEVIFLHEVRE 773 Query: 808 GIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK------DMRLYYPEIQTKE 861 G AD SYG+QV +LAGLP V RA IL E+ D+ L+ + Sbjct: 774 GAADRSYGVQVAQLAGLPRAVTDRARTILDALEQGERERAAPKALIDDLPLFSAAAEAAP 833 Query: 862 SKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 L EK+ L+ D++SP AL+ LY +KA Sbjct: 834 QPARPVGPSPL-EEKLGALSPDDLSPREALQALYDLKA 870 >gi|85706903|ref|ZP_01037993.1| DNA mismatch repair protein [Roseovarius sp. 217] gi|85668514|gb|EAQ23385.1| DNA mismatch repair protein [Roseovarius sp. 217] Length = 877 Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/889 (46%), Positives = 561/889 (63%), Gaps = 25/889 (2%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY+EIK+ P++L+FYRMGDFYELFFDDA A+ L I LTKRGKHL +DIPMCGVP Sbjct: 1 MMAQYLEIKAHYPEALLFYRMGDFYELFFDDAAAAAEALDIALTKRGKHLDQDIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 VH A Y+ LI+ G R+A+CEQ+E P EAKKRG KS+VRR VVRLVTPGTLTE+ LL Sbjct: 61 VHAAEGYLLTLIRKGFRVAVCEQMEDPAEAKKRGAKSVVRREVVRLVTPGTLTEESLLDA 120 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKEL--- 204 NYL + A +R A+AW+DISTG F + RL ++ R+ PRE++ +E ++ Sbjct: 121 RRHNYLTSFANVRDTGALAWVDISTGAFHVMPMAAARLGPELARLAPREVLLAEADVLSL 180 Query: 205 --SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 + +E + TLG A FD + E R+ + + T+D +G F++ E A A Sbjct: 181 AETVSESGASLTTLGQAA-------FDSTAGERRLCALFGVGTLDAYGQFTRPEIAAMGA 233 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 + ++ TQ P + P RE+ + ID+A R NLE+ L+G R SLL TID ++ Sbjct: 234 IVDWLDITQKGKLPLLRPPVRENEARVMQIDAATRRNLELTHALNGGRAGSLLATIDRTV 293 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGRL R++SP + RL+S+ F ++ + ++ L+ PD+ R+LSRL Sbjct: 294 TPGGGRLLERRLSSPSRALDVVQARLESVQFAVEQSRICADLRDSLRKVPDLDRALSRLG 353 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 + RG P+D+A +R+G+ NI +DLP L AV L +L L L + Sbjct: 354 LDRGGPRDLAAVRNGLAQAANIAERLTDSDLPPLLAEAVSGLTG-HDTLLDLLDQALIAE 412 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P RDGGF+ G D LDE R LRD+ + +IA +Q ++ ++T I++LKIKHNN LGYF Sbjct: 413 PPLLVRDGGFIAPGFDGGLDEARQLRDEGRGVIARMQGEFIQQTGIQSLKIKHNNVLGYF 472 Query: 503 IEVTSSSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 IEVTS+ A +L L D F HRQT +N RFTT+ L ++E RI NA AL IE Sbjct: 473 IEVTSTHADRMLAPPL--NDHFKHRQTTANQLRFTTIALTEMETRILNAGGRALGIEKRL 530 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 ++ L AI+ ++ + ++ +A ID+S ALA LA+ + +CRP +D S + GRHP+ Sbjct: 531 YDDLKTAILARAAEIAQTARGLAEIDLSTALADLARAETWCRPKVDQSRALRITGGRHPV 590 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE+ L+ Q PFIAN+CDL +D +WLLTGPNM GKSTFLRQNALI ++AQMGS Sbjct: 591 VERALRAQGGAPFIANECDLGEDSD-----IWLLTGPNMAGKSTFLRQNALIALLAQMGS 645 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 YVPA AHIG+V +LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA + + VILDEIGRG Sbjct: 646 YVPARSAHIGMVSQLFSRVGASDDLARGRSTFMVEMVETAAILNQADDHALVILDEIGRG 705 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 TAT DGLSIAWAT+E+LH+ N CR L ATH+HELT+LS L R NAT+ V + + ++F Sbjct: 706 TATYDGLSIAWATLEHLHDVNGCRALFATHYHELTNLSDKLARVENATVTVKEHDGDVVF 765 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI---- 857 +H+V G AD SYG+QV KLAGLP V++RA +L+ E+ R ++ Sbjct: 766 MHEVRRGAADRSYGVQVAKLAGLPTAVVARARVVLEALERGEREGSGAQRALIDDLPLFA 825 Query: 858 QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTLEKYS 906 ++ + ++++ + D +SP AL +Y +KA + S Sbjct: 826 AIPPPPPAPTRRHSVVEKRLEDILPDSLSPREALDLIYELKALATDTAS 874 >gi|260429056|ref|ZP_05783033.1| DNA mismatch repair protein MutS [Citreicella sp. SE45] gi|260419679|gb|EEX12932.1| DNA mismatch repair protein MutS [Citreicella sp. SE45] Length = 891 Score = 753 bits (1943), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/884 (45%), Positives = 561/884 (63%), Gaps = 12/884 (1%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 + + + TPMM QY+EIK+ PD+L+FYRMGDFYELFFDDA A+ L I LTKRGKH G Sbjct: 10 DGMTAVTPMMAQYLEIKAEYPDALLFYRMGDFYELFFDDAAAAAEALDIALTKRGKHAGD 69 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 DIPMCGVPVH A Y+ LI+ G R+A+CEQ+ESP EAKKRG KS+VRR VVRLVTPGTL Sbjct: 70 DIPMCGVPVHAAEGYLLTLIRKGFRVAVCEQMESPAEAKKRGAKSVVRREVVRLVTPGTL 129 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 TE+ LL N+L+A+ R+R EWA+AW DISTG F + R+ +++ R+ P E++ Sbjct: 130 TEESLLEARRHNFLVALGRVRDEWALAWADISTGAFHVMPLAQARIGAELARLAPSELLV 189 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 S+ E + + LG FD S +E+R+ Y + T+ FGSFS+ E A Sbjct: 190 SDT--VDGELRPVLGDLGIYPTVLGRASFDSSGAETRLCTLYGVQTLAGFGSFSRAELAA 247 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A + Y+ TQ P + P+R+ I L ID+A R NLE+ +++G R+ SLL ID Sbjct: 248 MGALVDYLDITQKGRLPLLRAPQRDAISRLLQIDAATRRNLELTHSMNGGRQGSLLSVID 307 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 ++T G RL R++SP + I RL++I++ + + L ++ L+ PD+ R+LS Sbjct: 308 RTVTPGGARLLERRVSSPARELAVIGRRLEAIDWAM-DSALGAALRDKLRKVPDLDRALS 366 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 RL + RG P+D+A +R+ + I + +LP+ L A L + L ++++ Sbjct: 367 RLGLDRGGPRDLASVRNALEQAEEIALALGEANLPDMLAEARTALHGHDELLALLDAALI 426 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 ++ P RDGGF+ G D LDE R LRD+ + ++A++Q +YAE+ + +LKIKHNN L Sbjct: 427 AEP-PLLARDGGFIAPGYDDGLDEARKLRDEGRSVVAAMQAQYAEQAGVNSLKIKHNNVL 485 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GYFIE T++ A + + FIHRQT +N RFTT+EL +LE RI NA N AL IE Sbjct: 486 GYFIETTATHAEKMMS-APLNETFIHRQTTANQVRFTTVELTELETRILNAGNEALEIEK 544 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 + L AI+ Q+ L ++ D+++ LA LA+ Q++CRP +D S F ++ GRH Sbjct: 545 RLYSSLREAILAQAAQLSETGLALSEFDLALGLADLARAQDWCRPQVDESRAFDIRGGRH 604 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE+ L+ Q + PFIANDC L+ + S + LLTGPNM GKSTFLRQNALI ++AQM Sbjct: 605 PVVERALQTQGAGPFIANDCGLTAEGEAAS--VTLLTGPNMAGKSTFLRQNALIALLAQM 662 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPA AH+G++ ++FSRVG++D+LA GRSTFMVEM+ETA+ILNQA +++ VILDEIG Sbjct: 663 GSYVPAKCAHVGLISQIFSRVGASDDLARGRSTFMVEMVETAAILNQADDRALVILDEIG 722 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DGLSIAWAT+E+LH NR RGL ATH+HELT L+ L+ NAT+ V + + + Sbjct: 723 RGTATYDGLSIAWATLEHLHGVNRVRGLFATHYHELTVLAGKLEGVKNATVAVKEWDGEV 782 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL-----YY 854 IFLH+V G AD SYG+QV +LAGLP V RA IL E+ L + Sbjct: 783 IFLHEVRDGAADRSYGVQVAQLAGLPKAVTDRARTILDALEQGERERAAPKALIDDLPLF 842 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + E++ + D+MSP AL+ LY +K Sbjct: 843 SAAAVAPPAPKPAAGPSPVEERLASILPDDMSPREALQALYELK 886 >gi|255264627|ref|ZP_05343969.1| DNA mismatch repair protein MutS [Thalassiobium sp. R2A62] gi|255106962|gb|EET49636.1| DNA mismatch repair protein MutS [Thalassiobium sp. R2A62] Length = 876 Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/877 (46%), Positives = 562/877 (64%), Gaps = 16/877 (1%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY+EIK+ + ++++FYRMGDFYE+FFDDA+ A+ L I LTKRGKH G+DIPMCG Sbjct: 6 TPMMAQYLEIKARHENAILFYRMGDFYEMFFDDAVAAADALEIALTKRGKHNGEDIPMCG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A Y+ LI+ G R+A+CEQ+ESP EAKKR KS+V+R+VVRLVTPGTLTED LL Sbjct: 66 VPFHSAESYLLALIRKGFRVAVCEQLESPAEAKKRSGKSVVKRDVVRLVTPGTLTEDSLL 125 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 + N+L + IR E A++W DISTG ++ T N RL ++ R+ P EII + LS Sbjct: 126 NARRHNFLACYSEIRAEGALSWADISTGELRLITCNQTRLGPELARLMPSEIII-QDHLS 184 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAIS 265 + + LG P+ FD + E + D + + ++D FG F++V+ +A A + Sbjct: 185 E-DLGEVIRELGISITPFPSSLFDSASGEKGLLDTFGVASLDAFGEFNRVDVSALGALVG 243 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y+ TQ N P + P RE T+ ID+A R NLE+ +LSGSR+ SLL TID ++T Sbjct: 244 YLDITQKGNMPLLRTPIRETENRTMQIDAATRRNLELTHSLSGSRKGSLLATIDRTLTAG 303 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 GGRL +RIASP D I RL I+ I ++++L+ PD+ R+LSR+ + R Sbjct: 304 GGRLLEQRIASPSRDLGTITQRLSLIDQMITATRSTQSLKELLRQVPDLERALSRVALDR 363 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPT 445 P+D+ +R+ + I+I + + D L KL L+ +++++ P Sbjct: 364 AGPRDLVSVRNALTQSISINTVLGEIDGDAALVDLSAKLLGHDALLDLLDDALVAEP-PL 422 Query: 446 FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEV 505 RDGGF+ D LDETR+LRD+ K +IA +Q + T I +LKIKHNN LGYFIE Sbjct: 423 LARDGGFIATDFDDELDETRALRDEGKSVIAGMQQDFISTTGISSLKIKHNNVLGYFIET 482 Query: 506 TSSSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEI 564 + A+ +L + L + FIHRQT +N RFTTLEL LE +I NA A+ IE + Sbjct: 483 PGTHANKMLTEPL--NETFIHRQTTANAVRFTTLELSQLETKILNAGARAIEIEKRHYFT 540 Query: 565 LSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEK 624 L+ AI++ S+ L + +A ID++ A A LA Q++ RP + F + GRHP+VE Sbjct: 541 LTAAILDASDRLFETAGALAQIDLTTAFADLATGQDWSRPSLTEGREFDIVGGRHPVVEA 600 Query: 625 TLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684 L++ +S F+ANDCDLS GK+WLLTGPNM GKSTFLRQNALIV++AQ+GSYVP Sbjct: 601 ALRE-TSGSFVANDCDLS------DGKIWLLTGPNMAGKSTFLRQNALIVLLAQIGSYVP 653 Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744 AS A IGIV +LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA ++ VILDEIGRGTAT Sbjct: 654 ASKATIGIVSQLFSRVGASDDLARGRSTFMVEMVETATILNQADEKALVILDEIGRGTAT 713 Query: 745 LDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHK 804 DGLSIAWAT+E+LHETNR R L ATH+HE+T +S L R N T++V + +IFLH+ Sbjct: 714 YDGLSIAWATLEHLHETNRSRALFATHYHEMTAISDKLDRVENTTVRVKEWEGDVIFLHE 773 Query: 805 VIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL---YHHNQKDMRLYYPEIQTKE 861 V+ G AD SYG+QV +LAGLP TV+ RA +L+ EK ++ +K + P + Sbjct: 774 VMRGAADRSYGVQVARLAGLPATVVERAKVVLEALEKGDRDGNNGKKAVIDDLPLFSSTP 833 Query: 862 SKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 S K K+ + D+++P AL +Y +K Sbjct: 834 SPAAKPKGPSEVELKLDQIMPDDLTPKEALALIYEMK 870 >gi|260576120|ref|ZP_05844113.1| DNA mismatch repair protein MutS [Rhodobacter sp. SW2] gi|259021600|gb|EEW24903.1| DNA mismatch repair protein MutS [Rhodobacter sp. SW2] Length = 879 Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/878 (47%), Positives = 551/878 (62%), Gaps = 15/878 (1%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY+ IK+ +PD+++FYRMGDF+E+FFDDA+ A+ L I LTKRGKHLG+DI MCG Sbjct: 7 TPMMAQYLAIKAQHPDAILFYRMGDFFEMFFDDAVAAAEALDIALTKRGKHLGQDISMCG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH A Y+ LI+ G R+AI EQ+E P EAKKRG KS+VRR VVRLVTPGTLTED LL Sbjct: 67 VPVHAAEGYLLTLIRKGFRVAIAEQMEDPAEAKKRGYKSVVRREVVRLVTPGTLTEDSLL 126 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 NYL A A +R E A+AW DISTG F + RL+ ++ R+ P E++ E + Sbjct: 127 EARRHNYLAAWAEVRGESALAWADISTGAFHVMPCPLVRLLPELARLAPSELLVQEGK-- 184 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAIS 265 AE L G FD + +E R+ + + T+ FGSF + E +A + Sbjct: 185 EAELAVLVTDSGAALTPLARASFDSTAAEQRLCTLFGVGTLQGFGSFDRAELSAMGGLVD 244 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y+ TQ P + P+RE + ID+A R NLEI LSG RE SLL +D + T A Sbjct: 245 YLNLTQRGKLPLLRPPQREAAGGAMQIDAATRRNLEITAALSGGREGSLLAAVDRTATSA 304 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 G RL R++SP D I+ RL ++ F ++ ++ L+ PD+ R+LSRL + R Sbjct: 305 GARLLERRLSSPSCDLAVIDERLAALRFLLEQSRFREDLRDHLRRVPDIDRALSRLALDR 364 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPT 445 G P+D+ IR G+ I L + P A+ +L L L + P Sbjct: 365 GGPRDLTAIRAGLTQARAIARRMLPDAPPLLAEAALALTGH--DALIDLLDRALVAEPPL 422 Query: 446 FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEV 505 RDGGF+ DA LDETR LRD+ + +IA LQ Y +T I +LKIKHNN LGYFIE Sbjct: 423 LARDGGFIASEFDAELDETRQLRDEGRGVIARLQADYIAQTGINSLKIKHNNVLGYFIET 482 Query: 506 TSSSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEI 564 T++ A +L L + FIHRQT + RFTTL L DLE RI NA N AL IE + Sbjct: 483 TTTHAERMLAPPL--SETFIHRQTTAGQVRFTTLPLSDLETRILNAANHALEIEKRHYAG 540 Query: 565 LSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEK 624 L AI+ QS + A++ +A ID++ ALA LA +N+C P +D S F + GRHP+VE+ Sbjct: 541 LLAAILAQSAPIFAAARALAEIDLATALADLAAAENWCEPRVDASHAFQITAGRHPVVER 600 Query: 625 TLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684 L++Q + F+ANDC L+ +++ +WLLTGPNM GKSTFLRQNALI ++AQ GSYVP Sbjct: 601 ALRRQGTT-FVANDCALTA---ESTPAIWLLTGPNMAGKSTFLRQNALIALLAQAGSYVP 656 Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744 A+ AHIG+V +LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA +++ VILDEIGRGTAT Sbjct: 657 AASAHIGLVSQLFSRVGASDDLARGRSTFMVEMVETAAILNQADDRALVILDEIGRGTAT 716 Query: 745 LDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHK 804 DGLSIAWAT+E+LH+ NRCR L ATH+HE+T LS L NAT+ V + +IFLH+ Sbjct: 717 YDGLSIAWATLEHLHDVNRCRALFATHYHEMTALSGKLAGVENATVTVKEWEGDVIFLHE 776 Query: 805 VIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN---QKDMRLYYPEIQTKE 861 V G AD SYG+QV +LAGLP+ VI RA +L+ E QK + P + Sbjct: 777 VKKGAADRSYGVQVARLAGLPSAVIERAKVVLEALEAGEREGGTRQKSLIDDLPLFRAVP 836 Query: 862 SKN-NLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ L+ +++K ++ DE++P+ AL LY +K Sbjct: 837 AQAPKLAPKSTAIEDRLKSVHPDELTPIQALALLYELK 874 >gi|84514908|ref|ZP_01002271.1| DNA mismatch repair protein [Loktanella vestfoldensis SKA53] gi|84511067|gb|EAQ07521.1| DNA mismatch repair protein [Loktanella vestfoldensis SKA53] Length = 876 Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/887 (46%), Positives = 562/887 (63%), Gaps = 35/887 (3%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 ++TPMM QY EIK+ +PD+L+FYRMGDFYE+FFDDA+ A+ L I LTKRGKH +DIPM Sbjct: 9 TATPMMAQYHEIKAQHPDALLFYRMGDFYEMFFDDAVAAADALDIALTKRGKHEDEDIPM 68 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVP H A Y LI+ G R+A+CEQ+ESP EAKKRG+KS+VRR VVRLVTPGTLTED Sbjct: 69 CGVPYHAAEGYFLTLIRKGFRVAVCEQMESPAEAKKRGHKSVVRREVVRLVTPGTLTEDS 128 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 LL NYL+A +R + AIAW+DISTG F + +L ++ R+ PRE+I + Sbjct: 129 LLDARRHNYLVAFHVVRDQGAIAWVDISTGAFHVMPCAGAKLGPELARLTPREVIVVDSA 188 Query: 204 LSH-----AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 +E ++ TLG A FD + E R+ + + ++D FG+F + E Sbjct: 189 QGDWSTLVSESNAVLTTLGASA-------FDSTAGEKRLCALFKVGSLDAFGAFERAEIA 241 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 A +A Y++ TQ N P + P RE +S + ID+A R +LE+ L+G R+ SLL I Sbjct: 242 AMSAVAEYLEITQRGNLPLLRPPVRETQKSAMQIDAATRRSLELTHALAGGRQGSLLACI 301 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D ++T G RL R+ASP D I R D++ F + L + I+ L+ + D+ R+L Sbjct: 302 DRTVTAGGARLLERRLASPSCDLGIITARQDAVAFMLDQTRLCDDIRSDLRGTHDLDRAL 361 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 SRL + RG P+D+A IR+ I L + D+P L L L L + Sbjct: 362 SRLALDRGGPRDMAAIRNTIAQAAR---LPVHPDMPPLLANVARDLAG-HDVLVALLDAA 417 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 L + P RDGGF+ G DA LDE R LRD+ + +IA +Q + +T I +LKIKHNN Sbjct: 418 LIAEPPLLARDGGFIAAGYDAELDEARKLRDEGRSVIAGMQADFIVQTGISSLKIKHNNV 477 Query: 499 LGYFIEVTSSSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 LGYFIE T++ A +L L D FIHRQT +N RFTT+EL ++E RI NA AL I Sbjct: 478 LGYFIETTATHAEKMLAPPL--NDTFIHRQTTANQVRFTTVELSEIETRILNAGGHALEI 535 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + L +AI+ Q+ L ++ +A +D++ ALA LA+ +N+ RP +D+S F + G Sbjct: 536 EKRLYSSLKDAILAQAGPLGALARALAEVDLASALAHLARTENWVRPKLDDSRAFAITGG 595 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE L++Q + PF+ANDC L+ ++WLLTGPNM GKSTFLRQNAL+ I+A Sbjct: 596 RHPVVEMALQKQGA-PFVANDCTLT------DARVWLLTGPNMAGKSTFLRQNALLAILA 648 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 QMG +VPA AHIGIV ++FSRVG++D+LA GRSTFMVEM+ETA+ILNQA +++ VILDE Sbjct: 649 QMGGFVPAQAAHIGIVSQIFSRVGASDDLARGRSTFMVEMVETAAILNQADDRALVILDE 708 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGTAT DGLSIAWAT+E+LH+ NRCR L ATH+HE++ LS L NAT+ V + + Sbjct: 709 IGRGTATYDGLSIAWATLEHLHDVNRCRALFATHYHEMSALSAKLDGVENATVTVKEWDG 768 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DMRL 852 +IFLH+V G AD SYG+QV +LAGLP V+ RA +L+ EK + D+ L Sbjct: 769 DVIFLHEVKRGTADRSYGVQVARLAGLPQVVVDRAKVVLEALEKGEREGGRKAFVDDLPL 828 Query: 853 YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + K+ +S+ + ++K + DE++P AL +Y ++ Sbjct: 829 FAAMPAPPPVKHQVSEVEA----RLKGVMPDELTPKDALALIYELRG 871 >gi|294085166|ref|YP_003551926.1| MutS 1 protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292664741|gb|ADE39842.1| MutS 1 protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 922 Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/944 (42%), Positives = 574/944 (60%), Gaps = 77/944 (8%) Query: 1 MTKEFSSPQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDAL 60 M + S+P L + +K+ TPMM QY+ +K +PDSL+FYRMGDFYE+FF+DA Sbjct: 1 MASQISTP---------LPDKVKAPTPMMAQYLSVKESHPDSLLFYRMGDFYEMFFEDAE 51 Query: 61 LASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR 120 +A+ LGI LTKRGK+ G+DIPMCGVPVH + Y+ +LIK GHR+A+CEQ ESP K+R Sbjct: 52 IAAAILGIALTKRGKNQGEDIPMCGVPVHAVDAYMARLIKAGHRVAVCEQTESPEAQKQR 111 Query: 121 GNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTS 180 G K ++R+VVR++TPGTLTED LL P N+L A+ R A+AW D+STG F + Sbjct: 112 GAKGPLKRDVVRVMTPGTLTEDDLLEPRAHNFLAALGRSGAGQALAWADMSTGDFFVEDL 171 Query: 181 NHDRLISD----------IMRIDPREIIFSE-KELSHAEYKSLFETLGNVAVAQPNVFFD 229 +HD D I+R+ P E+I + ++ +H + Q FD Sbjct: 172 SHDGASDDNGANIGLEDVIVRLTPSELIVPQGQDCTHWPWADEL-----CITEQAPSMFD 226 Query: 230 HSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQST 289 S+ + ++ ++++D +G FS+ +AA A + YI+ TQ+ N P + + Sbjct: 227 SSLGTQALQAFFGVSSLDGYGDFSRAMLSAAGALLGYIEATQIGNMPRLQPLQAIAHNVY 286 Query: 290 LFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLD 349 L ID A R +LE+ RTL+G R+ SLL +D S+T AG R+ R+A+PL D I R D Sbjct: 287 LDIDPATRRSLELTRTLAGERKGSLLHAVDRSMTAAGSRMLGARLAAPLCDLAAIVARQD 346 Query: 350 SINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF- 408 +++FI+N + ++ L++ PD+ R+++RL +G G P+D+A + G+R ++ L Sbjct: 347 LVSWFIENEATMTAMRDKLRALPDMQRAVTRLTMGHGGPRDLAALETGLRIAETVVGLIR 406 Query: 409 ----------------LKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGF 452 L +P + +E L P +L L+ L+D+LP RDGGF Sbjct: 407 QPQMSQPQTNQNGTNALITTMPARMEALLEMLVA-PLALADKLAPALADELPFLARDGGF 465 Query: 453 LRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASV 512 +R G D LD+ R LRD+S+R++A+LQ +YAEET+I +LKIKHNN LGY ++V ++ A Sbjct: 466 VRLGYDQGLDDVRQLRDESRRLMAALQARYAEETEIASLKIKHNNVLGYHVDVRATHADK 525 Query: 513 LKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQ 572 L + + FIHRQT + RFTT EL ++E + A AL ELE FE L+ A+ Sbjct: 526 LMQ----SELFIHRQTTAQTVRFTTTELAEMERDMAAAAGKALARELEIFEALTAAVAAC 581 Query: 573 SESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSK 632 + ++ A+ +A +D++ A+LA++ + RP + ++ F ++ GRHP++E L Q+ Sbjct: 582 ASAIGEAATALAELDVAGGSAVLARDAQFVRPDMRDAAIFEIEKGRHPVIEMMLPAQT-- 639 Query: 633 PFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGI 692 PFI NDC L D ++ +WLLTGPNM GKSTFLRQNA I+I+AQ G +VPA A IGI Sbjct: 640 PFIPNDCKLGADGD-DAAAIWLLTGPNMAGKSTFLRQNAHIIILAQAGLFVPADRAVIGI 698 Query: 693 VDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAW 752 VD+LFSRVG++D+LA GRSTFMVEM+ETA+ILN+AT +SFVILDEIGRGTAT DGL+IAW Sbjct: 699 VDRLFSRVGASDDLAKGRSTFMVEMVETAAILNRATPRSFVILDEIGRGTATYDGLAIAW 758 Query: 753 ATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADH 812 AT+E+LH+ N+CR L ATH+HELT L ++ R ++QV + I+FLH+VI G AD Sbjct: 759 ATLEHLHDVNQCRTLFATHYHELTHLQQAKARLLCHSMQVREWQGDIVFLHRVIAGAADR 818 Query: 813 SYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLS----- 867 SYG+ V +LAGLP V+ RA IL E H + + +NL Sbjct: 819 SYGVHVARLAGLPYKVLGRAEQILAELEAGKHG----------AVDVGQVADNLPLFDYR 868 Query: 868 KNDKLF------------VEKIKCLNLDEMSPLTALKTLYAVKA 899 +D+ F +E I + D ++P A+ LY +KA Sbjct: 869 SDDRGFGVPAGAVRPSAVLESIDAMLPDTLTPRAAMDLLYELKA 912 >gi|221640715|ref|YP_002526977.1| DNA mismatch repair protein MutS [Rhodobacter sphaeroides KD131] gi|221161496|gb|ACM02476.1| DNA mismatch repair protein mutS [Rhodobacter sphaeroides KD131] Length = 880 Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/883 (46%), Positives = 565/883 (63%), Gaps = 26/883 (2%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY+EIK+ NP +++FYRMGDFYE+FFDDA LA+ L I LTKRGKH G+DI MCG Sbjct: 12 TPMMAQYLEIKAQNPGAILFYRMGDFYEMFFDDAALAAEALDIALTKRGKHRGEDIAMCG 71 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP+H A Y+ LI+ G R+AI EQ+E P EAKKRG+KS+VRR VVRLVTPGTLTED LL Sbjct: 72 VPIHAAEGYLLTLIRKGFRVAIAEQMEDPAEAKKRGSKSVVRREVVRLVTPGTLTEDTLL 131 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS-EKEL 204 NYL A A IR E A+AW DISTG ++ RL+ ++ R+ PRE++ + E+EL Sbjct: 132 EARRHNYLCAFAEIRDEAALAWADISTGELSVTACPLPRLMPELARLAPRELLVADEREL 191 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 E +G FD + +E R+ + + T+++FG+F++ E +A A + Sbjct: 192 D------WIEEVGCALTPLSRASFDSASAEKRLCALFGVGTLESFGNFTRAELSAMGALV 245 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 Y+ TQ P + P RE + T+ ID+A R NLEI + L+G R+ SLL +D ++T Sbjct: 246 DYLDLTQRGKLPLLRPPVRETVGGTVQIDAATRRNLEITQALAGGRDGSLLAAVDRTVTA 305 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 G RL R++SP D I+ RL ++ + + P L ++ L+ PD+ R+LSRL + Sbjct: 306 PGARLLERRLSSPTRDLGLIHERLGAVRWLTEEPRLREEMRASLRRVPDMDRALSRLALD 365 Query: 385 RGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLP 444 R P+D+A IR G+ I + + P + A+E L ++L L L + P Sbjct: 366 RAGPRDMAAIRAGLAQAQEIAQR-MPAEAPALVTRALEALGG-HEALVDLLDQALVAEPP 423 Query: 445 TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIE 504 RDGGF+ +G DA LDETR LRD+ + +IAS+Q + E T I++LKIKHNN LGYFIE Sbjct: 424 LLARDGGFIAEGFDADLDETRRLRDEGRGVIASMQAGFIEVTGIQSLKIKHNNVLGYFIE 483 Query: 505 VTSSSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 VTS+ A +L L +RFIHRQT + RFTT+EL +LE RI NA N AL +E F Sbjct: 484 VTSTHAEKMLSAPL--SERFIHRQTTAGQVRFTTVELSELETRILNAGNRALDLEKMHFA 541 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L AI++ + + A++ +A +D+ A A LA +++ P ID+S F ++ GRHP+VE Sbjct: 542 ALRTAILDLAGQIGRAARSLAELDLIAAFADLAVTEDWTEPEIDDSRAFAIEAGRHPVVE 601 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 + L++ + PF+AN CDLS + +WL+TGPNM GKSTFLRQNALI ++AQ GS+V Sbjct: 602 RALRR-TGTPFVANHCDLST---GETPAVWLITGPNMAGKSTFLRQNALIALLAQAGSFV 657 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA AHIG+V ++FSRVG++D+LA GRSTFMVEM+ETA+ILNQA +++ VILDEIGRGTA Sbjct: 658 PARRAHIGLVSQIFSRVGASDDLARGRSTFMVEMVETAAILNQADDRALVILDEIGRGTA 717 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DGLSIAWAT+E+LH+ NRCR L ATH+HE+T L+ LK NAT+ V + +IFLH Sbjct: 718 TWDGLSIAWATLEHLHDRNRCRALFATHYHEMTALAGKLKGVENATVAVKEWEGDVIFLH 777 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-------DMRLYYPE 856 +V G AD SYG+QV +LAGLP +VI RA +L E + D+ L+ Sbjct: 778 EVRRGAADRSYGVQVARLAGLPASVIERARTVLDALESGERESGGRRQTLIDDLPLFR-- 835 Query: 857 IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + E+++ + D++SP ALK LY ++A Sbjct: 836 -AAPPPPAPAAPKTSPVEERLREIQPDDLSPREALKLLYDLRA 877 >gi|77464796|ref|YP_354300.1| DNA mismatch repair protein MutS [Rhodobacter sphaeroides 2.4.1] gi|124020988|sp|Q3IYI5|MUTS_RHOS4 RecName: Full=DNA mismatch repair protein mutS gi|77389214|gb|ABA80399.1| DNA mismatch repair protein MutS [Rhodobacter sphaeroides 2.4.1] Length = 875 Score = 747 bits (1929), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/883 (46%), Positives = 564/883 (63%), Gaps = 26/883 (2%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY+EIK+ NP +++FYRMGDFYE+FFDDA LA+ L I LTKRGKH G+DI MCG Sbjct: 7 TPMMAQYLEIKAQNPGAILFYRMGDFYEMFFDDAALAAEALDIALTKRGKHRGEDIAMCG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP+H A Y+ LI+ G R+AI EQ+E P EAKKRG+KS+VRR VVRLVTPGTLTED LL Sbjct: 67 VPIHAAEGYLLTLIRKGFRVAIAEQMEDPAEAKKRGSKSVVRREVVRLVTPGTLTEDTLL 126 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS-EKEL 204 NYL A A IR E A+AW DISTG ++ RL+ ++ R+ PRE++ + E+EL Sbjct: 127 EARRHNYLCAFAEIRDEAALAWADISTGELSVTACPLPRLMPELARLAPRELLVADEREL 186 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 E +G FD + +E R+ + + T+++FG+F++ E +A A + Sbjct: 187 D------WIEEVGCALTPLSRASFDSASAEKRLCALFGVGTLESFGNFTRAELSAMGALV 240 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 Y+ TQ P + P RE + T+ ID+A R NLEI + L+G R+ SLL +D ++T Sbjct: 241 DYLDLTQRGKLPLLRPPVRETVGGTVQIDAATRRNLEITQALAGGRDGSLLSAVDRTVTA 300 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 G RL R++SP D I+ RL ++ + + P L ++ L+ PD+ R+LSRL + Sbjct: 301 PGARLLERRLSSPTRDLGLIHERLGAVRWLTEEPRLREEMRASLRRVPDMDRALSRLALD 360 Query: 385 RGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLP 444 R P+D+A IR G+ I + + P + A+E L ++L L L + P Sbjct: 361 RAGPRDMAAIRAGLAQAQEIAQR-MPAEAPALVTRALEALGG-HEALVDLLDQALVAEPP 418 Query: 445 TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIE 504 RDGGF+ G DA LDETR LRD+ + +IAS+Q + E T I++LKIKHNN LGYFIE Sbjct: 419 LLARDGGFIAQGFDADLDETRRLRDEGRGVIASMQAGFIEVTGIQSLKIKHNNVLGYFIE 478 Query: 505 VTSSSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 VTS+ A +L L +RFIHRQT + RFTT+EL +LE RI NA N AL +E F Sbjct: 479 VTSTHAEKMLSAPL--SERFIHRQTTAGQVRFTTVELSELETRILNAGNRALDLEKMHFA 536 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L AI++ + + A++ +A +D+ A A LA +++ P ID+S F ++ GRHP+VE Sbjct: 537 ALRTAILDLAGQIGRAARSLAELDLISAFADLAVTEDWTEPEIDDSRAFAIEAGRHPVVE 596 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 + L++ + PF+AN CDLS + +WL+TGPNM GKSTFLRQNALI ++AQ GS+V Sbjct: 597 RALRR-TGTPFVANHCDLST---GETPAVWLITGPNMAGKSTFLRQNALIALLAQAGSFV 652 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA AHIG+V ++FSRVG++D+LA GRSTFMVEM+ETA+ILNQA +++ VILDEIGRGTA Sbjct: 653 PARRAHIGLVSQIFSRVGASDDLARGRSTFMVEMVETAAILNQADDRALVILDEIGRGTA 712 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DGLSIAWAT+E+LH+ NRCR L ATH+HE+T L+ LK NAT+ V + +IFLH Sbjct: 713 TWDGLSIAWATLEHLHDRNRCRALFATHYHEMTALAGKLKGVENATVAVKEWEGDVIFLH 772 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ-------KDMRLYYPE 856 +V G AD SYG+QV +LAGLP +VI RA +L E + D+ L+ Sbjct: 773 EVRRGAADRSYGVQVARLAGLPASVIERARTVLDALESGERESGGRRQTLIDDLPLFR-- 830 Query: 857 IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + E+++ + D++SP ALK LY ++A Sbjct: 831 -AAPPPPAPAAPKTSPVEERLREIQPDDLSPREALKLLYDLRA 872 >gi|126463639|ref|YP_001044753.1| DNA mismatch repair protein MutS [Rhodobacter sphaeroides ATCC 17029] gi|189083184|sp|A3PNR5|MUTS_RHOS1 RecName: Full=DNA mismatch repair protein mutS gi|126105303|gb|ABN77981.1| DNA mismatch repair protein MutS [Rhodobacter sphaeroides ATCC 17029] Length = 880 Score = 747 bits (1929), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/883 (46%), Positives = 564/883 (63%), Gaps = 26/883 (2%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY+EIK+ NP +++FYRMGDFYE+FFDDA LA+ L I LTKRGKH G+DI MCG Sbjct: 12 TPMMAQYLEIKAQNPGAILFYRMGDFYEMFFDDAALAAEALDIALTKRGKHRGEDIAMCG 71 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP+H A Y+ LI+ G R+AI EQ+E P EAKKRG+KS+VRR VVRLVTPGTLTED LL Sbjct: 72 VPIHAAEGYLLTLIRKGFRVAIAEQMEDPAEAKKRGSKSVVRREVVRLVTPGTLTEDTLL 131 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS-EKEL 204 NYL A A IR E A+AW DISTG ++ RL+ ++ R+ PRE++ + E+EL Sbjct: 132 EARRHNYLCAFAEIRDEAALAWADISTGELSVTACPLPRLMPELARLAPRELLVADEREL 191 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 E +G FD + +E R+ + + T+++FG+F++ E +A A + Sbjct: 192 D------WIEEVGCALTPLSRASFDSASAEKRLCALFGVGTLESFGNFTRAELSAMGALV 245 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 Y+ TQ P + P RE + T+ ID+A R NLEI + L+G R+ SLL +D ++T Sbjct: 246 DYLDLTQRGKLPLLRPPVRETVGGTVQIDAATRRNLEITQALAGGRDGSLLSAVDRTVTA 305 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 G RL R++SP D I+ RL ++ + + P L ++ L+ PD+ R+LSRL + Sbjct: 306 PGARLLERRLSSPTRDLGLIHERLGAVRWLTEEPRLREEMRASLRRVPDMDRALSRLALD 365 Query: 385 RGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLP 444 R P+D+A IR G+ I + + P + A+E L ++L L L + P Sbjct: 366 RAGPRDMAAIRAGLAQAQEIAQR-MPAEAPALVTRALEALGG-HEALVDLLDQALVAEPP 423 Query: 445 TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIE 504 RDGGF+ G DA LDETR LRD+ + +IAS+Q + E T I++LKIKHNN LGYFIE Sbjct: 424 LLARDGGFIAQGFDADLDETRRLRDEGRGVIASMQAGFIEVTGIQSLKIKHNNVLGYFIE 483 Query: 505 VTSSSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 VTS+ A +L L +RFIHRQT + RFTT+EL +LE RI NA N AL +E F Sbjct: 484 VTSTHAEKMLSAPL--SERFIHRQTTAGQVRFTTVELSELETRILNAGNRALDLEKMHFA 541 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L AI++ + + A++ +A +D+ A A LA +++ P ID+S F ++ GRHP+VE Sbjct: 542 ALRTAILDLAGQIGRAARSLAELDLISAFADLAAIEDWTEPEIDDSRAFAIEAGRHPVVE 601 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 + L++ + PF+AN CDLS + +WL+TGPNM GKSTFLRQNALI ++AQ GS+V Sbjct: 602 RALRR-TGTPFVANHCDLST---GGTPAVWLITGPNMAGKSTFLRQNALIALLAQAGSFV 657 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA AHIG+V ++FSRVG++D+LA GRSTFMVEM+ETA+ILNQA +++ VILDEIGRGTA Sbjct: 658 PARRAHIGLVSQIFSRVGASDDLARGRSTFMVEMVETAAILNQADDRALVILDEIGRGTA 717 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DGLSIAWAT+E+LH+ NRCR L ATH+HE+T L+ LK NAT+ V + +IFLH Sbjct: 718 TWDGLSIAWATLEHLHDRNRCRALFATHYHEMTALAGKLKGVENATVAVKEWEGDVIFLH 777 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-------DMRLYYPE 856 +V G AD SYG+QV +LAGLP +VI RA +L E + D+ L+ Sbjct: 778 EVRRGAADRSYGVQVARLAGLPASVIERARTVLDALESGERESGGRRQTLIDDLPLFR-- 835 Query: 857 IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + E+++ + D++SP ALK LY ++A Sbjct: 836 -AAPPPPAPAAPKTSPVEERLREIQPDDLSPREALKLLYDLRA 877 >gi|189083212|sp|Q2WAN4|MUTS_MAGMM RecName: Full=DNA mismatch repair protein mutS Length = 882 Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/882 (45%), Positives = 554/882 (62%), Gaps = 22/882 (2%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM QY+ IK +PD L+FYRMGDFYELFFDDA+ AS L I LTKRGKH G+DI MC Sbjct: 12 ATPMMAQYLAIKRAHPDCLLFYRMGDFYELFFDDAVKASAALDIALTKRGKHAGEDIAMC 71 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVPV Y+ KL++ G ++AI EQ+E P EAKKRG+KS+V R+VVR++T GTLTED L Sbjct: 72 GVPVRAYEAYLAKLVRSGFKVAIGEQMEDPAEAKKRGSKSVVARDVVRVITAGTLTEDTL 131 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 L NYL AVA + +AW+D+STG F + L + + R+ P E++ S++ L Sbjct: 132 LDARSHNYLAAVAEAQGTLGLAWVDVSTGDFAMQAIAPKTLAAALARLSPGELLVSDRLL 191 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 A++ ++ NV P FD S R+ Y + +D FG+FS+ E A A + Sbjct: 192 GAADFFDVWADWKNVLSPLPTARFDSENSRRRLEALYGVGALDGFGAFSRAELAAGGALV 251 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 Y++ TQ P + P+R + + ID+A R NLE+ TLSG R SLL TID ++TG Sbjct: 252 DYVELTQKGKLPRLSLPKRLAEGAVMEIDAATRRNLELAETLSGERRGSLLATIDRTVTG 311 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 AG RL A ++A+PLTD I RLD + FF+++ + +++ LK PDV R+LSRL +G Sbjct: 312 AGARLLAAQLAAPLTDPHAIEWRLDMVGFFVEHESVRAQLRETLKRCPDVERALSRLSLG 371 Query: 385 RGEPKDIAVIRDGIRSGINILNLFLKN---DLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 RG P+D+A +RD + + I L + + D P + +L + +L L L+ Sbjct: 372 RGGPRDLANVRDAL-AEIPALRMLVTQSHLDTPPGINQCARELGE-HSALVDRLQRALAP 429 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 DLP RDGGF+ G LDE + L+ +S ++ L+ +Y +ET I +LKI+HNN +G+ Sbjct: 430 DLPLNARDGGFIAQGYHEGLDELKGLKTESNGLMMRLEKRYQDETGIASLKIRHNNIIGH 489 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 IEV S A L + +IHRQTM+N R+TT ELI+L +IT A + AL +E+E Sbjct: 490 HIEVPSKQADRLGEG------YIHRQTMANAARYTTTELIELAGKITGAADRALALEMEL 543 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 L + ++ + A+ +A +D + AL +A + RP +D+ST F ++ RHP+ Sbjct: 544 LADLIGEVTARAAEIALAAAALAGLDCASALGEMASSARWSRPRVDDSTAFDIRGARHPV 603 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE L+ S PF+ANDCDL+ +S +LWL+TGPNM GKSTFLRQNA+I I+AQMGS Sbjct: 604 VEAALEAARSGPFVANDCDLA-----DSQRLWLVTGPNMAGKSTFLRQNAVIAILAQMGS 658 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA H+G+VD+LFSRVG+AD+LA GRSTFMVEM+ETA+ILNQA ++ VILDEIGRG Sbjct: 659 FVPAESVHMGVVDRLFSRVGAADDLARGRSTFMVEMVETAAILNQAGPRALVILDEIGRG 718 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 TAT DGLSIAWA +E+LHE NRCR L ATH+HELT L+ L ++V + ++F Sbjct: 719 TATFDGLSIAWAVVEHLHEVNRCRALFATHYHELTRLTSRLAALSCHMMRVKEWQGDVVF 778 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN-----QKDMRLYYPE 856 LH+V G AD SYGI V +LAGLP V+ RA ++L EK + D+ L+ Sbjct: 779 LHEVGAGAADRSYGIHVARLAGLPPAVVGRAEEVLGILEKSDQASGMARLADDLPLFAAL 838 Query: 857 IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + + L + L E +K +N D+++ AL +Y +K Sbjct: 839 AKPRPAATALPQASPL-EEALKAVNPDDLTARQALDLVYELK 879 >gi|332559692|ref|ZP_08414014.1| DNA mismatch repair protein MutS [Rhodobacter sphaeroides WS8N] gi|332277404|gb|EGJ22719.1| DNA mismatch repair protein MutS [Rhodobacter sphaeroides WS8N] Length = 875 Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/883 (46%), Positives = 562/883 (63%), Gaps = 26/883 (2%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY+EIK+ NP +++FYRMGDFYE+FF+DA LA+ L I LTKRGKH G+DI MCG Sbjct: 7 TPMMAQYLEIKAQNPGAILFYRMGDFYEMFFEDAALAAEALDIALTKRGKHRGEDIAMCG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP+H A Y+ LI+ G R+AI EQ+E P EAKKRG+KS+VRR VVRLVTPGTLTED LL Sbjct: 67 VPIHAAEGYLLTLIRKGFRVAIAEQMEDPAEAKKRGSKSVVRREVVRLVTPGTLTEDTLL 126 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS-EKEL 204 NYL A A IR E A+AW DISTG ++ RL+ ++ R+ PRE++ + E+EL Sbjct: 127 EARRHNYLCAFAEIRDEAALAWADISTGELSVTACPLPRLMPELARLAPRELLVADEREL 186 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 E + FD + +E R+ + + T+++FG+F++ E +A A + Sbjct: 187 D------WIEEVDCALTPLSRASFDSASAEKRLCALFGVGTLESFGNFTRAELSAMGALV 240 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 Y+ TQ P + P RE + T+ ID+A R NLEI + L+G R+ SLL +D ++T Sbjct: 241 DYLDLTQRGKLPLLRPPVRETVGGTVQIDAATRRNLEITQALAGGRDGSLLSAVDRTVTA 300 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 G RL R++SP D I+ RL ++ + P L ++ L+ PD+ R+LSRL + Sbjct: 301 PGARLLERRLSSPTRDLGLIHERLGAVRWLTAEPRLREEMRASLRRVPDMDRALSRLALD 360 Query: 385 RGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLP 444 R P+D+A IR G+ I + + P + A+E L ++L L L + P Sbjct: 361 RAGPRDMAAIRAGLTQAQEIAQR-MPAEAPALVTRALEALGG-HEALVDLLDQALVAEPP 418 Query: 445 TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIE 504 RDGGF+ G DA LDETR LRD+ + +IAS+Q + + T I++LKIKHNN LGYFIE Sbjct: 419 LLARDGGFIAQGFDADLDETRRLRDEGRGVIASMQAGFIDVTGIQSLKIKHNNVLGYFIE 478 Query: 505 VTSSSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 VTS+ A +L L +RFIHRQT + RFTT+EL +LE RI NA N AL +E F Sbjct: 479 VTSTHAEKMLSAPL--SERFIHRQTTAGQVRFTTVELSELETRILNAGNRALDLEKMHFA 536 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L AI++ + + A++ +A +D+ A A LA +++ P ID+S F ++ GRHP+VE Sbjct: 537 ALRTAILDLAGQIGRAARSLAELDLIAAFADLAVTEDWTEPEIDDSRAFAIEAGRHPVVE 596 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 + L++ + PF+AN CDLS + +WL+TGPNM GKSTFLRQNALI ++AQ GS+V Sbjct: 597 RALRR-TGTPFVANHCDLST---GGTPAVWLITGPNMAGKSTFLRQNALIALLAQAGSFV 652 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA AHIG+V ++FSRVG++D+LA GRSTFMVEM+ETA+ILNQA +++ VILDEIGRGTA Sbjct: 653 PARRAHIGLVSQIFSRVGASDDLARGRSTFMVEMVETAAILNQADDRALVILDEIGRGTA 712 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DGLSIAWAT+E+LH+ NRCR L ATH+HE+T L+ LK NAT+ V + +IFLH Sbjct: 713 TWDGLSIAWATLEHLHDRNRCRALFATHYHEMTALAGKLKGVENATVAVKEWEGDVIFLH 772 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ-------KDMRLYYPE 856 +V G AD SYG+QV +LAGLP +VI RA +L E + D+ L+ Sbjct: 773 EVRRGAADRSYGVQVARLAGLPASVIERARTVLDALESGERESGGRRQTLIDDLPLFR-- 830 Query: 857 IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + E+++ + D++SP ALK LY ++A Sbjct: 831 -AAPPPPAPAAPKTSPVEERLREIQPDDLSPREALKLLYDLRA 872 >gi|146278688|ref|YP_001168847.1| DNA mismatch repair protein MutS [Rhodobacter sphaeroides ATCC 17025] gi|166232128|sp|A4WVX8|MUTS_RHOS5 RecName: Full=DNA mismatch repair protein mutS gi|145556929|gb|ABP71542.1| DNA mismatch repair protein MutS [Rhodobacter sphaeroides ATCC 17025] Length = 876 Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/883 (46%), Positives = 563/883 (63%), Gaps = 25/883 (2%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY+EIK+ +P +++FYRMGDFYE+FF+DA LA+ L I LTKRGKH G+DI MCG Sbjct: 7 TPMMAQYLEIKAQHPGAILFYRMGDFYEMFFEDAALAAEALDIALTKRGKHKGEDIAMCG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP+H A Y+ LI+ G R+AI EQ+E P EAKKRG+KS+VRR VVRLVTPGTLTED LL Sbjct: 67 VPIHAAEGYLLTLIRKGFRVAIAEQMEDPAEAKKRGSKSVVRREVVRLVTPGTLTEDSLL 126 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS-EKEL 204 N+L A A IR E A+AW DISTG F ++ RL+ ++ R+ PRE++ + E+ L Sbjct: 127 EARRHNFLCAFAEIRDEAALAWADISTGEFSVTPCPLPRLLPELARLAPRELLVADERPL 186 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 E +G FD + +E R+ + + T+D+FG+F++ E +A A + Sbjct: 187 D------WIEEVGCALTPLARASFDSASAEKRLCTLFGVGTLDSFGNFTRPELSAMGALV 240 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 Y+ TQ P + P RE T+ ID+A R NLEI + L+G RE SLL +D ++T Sbjct: 241 DYLDLTQRGKLPLLRPPVREVAGGTVQIDAATRRNLEITQALTGGREGSLLSAVDRTVTA 300 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 G RL R++SP D I+ RL ++++ P L ++ L+ PD+ R+LSRL + Sbjct: 301 PGARLLERRLSSPSRDLGLIHDRLAAVSWLTDEPRLREDLRASLRRVPDMDRALSRLALD 360 Query: 385 RGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLP 444 R P+D+A IR G+ I + D P L +E L+ ++L L L + P Sbjct: 361 RAGPRDMAAIRAGLTQAEAIAGR-MPADAPSLLAETLEALRG-HENLVDLLDQALVAEPP 418 Query: 445 TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIE 504 RDGGF+ G D LDETR LRD+ + +IAS+Q + E T I++LKIKHNN LGYFIE Sbjct: 419 LLVRDGGFIAPGFDDDLDETRRLRDEGRGVIASMQAGFIETTGIQSLKIKHNNVLGYFIE 478 Query: 505 VTSSSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 VTS+ A +L L + FIHRQT + RFTT+ L +LE RI NA N AL +E F Sbjct: 479 VTSTHAEKMLSPPL--SESFIHRQTTAGQVRFTTVALSELETRILNAGNRALELEKMHFA 536 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L AI++Q+ ++ A++ +A +D+ A A LA +++ P +D+S F ++ GRHP+VE Sbjct: 537 ALRTAILDQAGAIGRAARALAEVDLIAAFADLAVAEDWTEPQVDDSRAFAIEAGRHPVVE 596 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 + L++ + PF+ANDCDLS + +WL+TGPNM GKSTFLRQNALI ++AQ GS+V Sbjct: 597 RALRR-TGTPFVANDCDLS---KAETPAVWLITGPNMAGKSTFLRQNALIALLAQAGSFV 652 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA AHIG+V ++FSRVG++D+LA GRSTFMVEM+ETA+ILNQA +++ VILDEIGRGTA Sbjct: 653 PARRAHIGLVSQIFSRVGASDDLARGRSTFMVEMVETAAILNQADDRALVILDEIGRGTA 712 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DGLSIAWAT+E+LH+TNRCR L ATH+HE+T L+ L NAT+ V + +IFLH Sbjct: 713 TWDGLSIAWATLEHLHDTNRCRALFATHYHEMTALAGKLTGVENATVSVKEWQGEVIFLH 772 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-------DMRLYYPE 856 +V G AD SYG+QV +LAGLP +VI RA +L E + D+ L+ Sbjct: 773 EVRRGAADRSYGVQVARLAGLPASVIERARTVLDALESGERESGPRRQALIDDLPLFRAA 832 Query: 857 IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + E+++ + D++SP ALK LY ++A Sbjct: 833 PPPPAPAAPPKASQ--VEERLRAIQPDDLSPREALKLLYDLRA 873 >gi|144900388|emb|CAM77252.1| MutS 1 protein [Magnetospirillum gryphiswaldense MSR-1] Length = 973 Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/882 (45%), Positives = 564/882 (63%), Gaps = 21/882 (2%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM QY+ IK +PD L+FYRMGDFYELFFDDA+ A+ L I LTKRGKHLG+DI MC Sbjct: 102 ATPMMAQYLAIKHAHPDCLLFYRMGDFYELFFDDAVKAAAALDIALTKRGKHLGEDIAMC 161 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVPV + Y+ +L++ G+++AI EQ E P EAKKRG KS+V R+VVR++T GTLTED L Sbjct: 162 GVPVRSYEAYLSRLVRAGYKVAIGEQTEDPAEAKKRGAKSVVSRDVVRVITAGTLTEDNL 221 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 L NYL A+A +AW+D+STG F + L + + R+DP E++ E+ L Sbjct: 222 LDARSHNYLAALAEAGGGLGLAWVDVSTGDFAMQPLAPPLLSAALARLDPGELLVPERLL 281 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 + + + + P+V FD S R+ Y + +D FG+F + E A A + Sbjct: 282 NQPDLLEAWSEWKTILTPLPSVRFDSENSRRRLEALYGVGALDAFGAFGRAELAAGGALV 341 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 YI+ TQ P + P+R + + ID A R NLE+ TL+G R+ SLL TID ++TG Sbjct: 342 DYIELTQKGKLPRLNPPQRLAQGAVMEIDGATRRNLELAETLTGERKGSLLATIDRTVTG 401 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 AG RL A +A+PLTD I+ RLD++ FF+++ + ++ LK PD+ R+LSRL +G Sbjct: 402 AGARLLAAHLAAPLTDPAAIDRRLDAVAFFVEHEDVREAVRAALKRCPDIERALSRLSLG 461 Query: 385 RGEPKDIAVIRDGIRSGINILNLFLKNDL---PEELRGAVEKLKKLPQSLEKTLSSMLSD 441 RG P+D+A IRD + ++ L + L P + A + L + +L L+ L++ Sbjct: 462 RGGPRDLAAIRDALAEIPSLRGLIARPALDAPPPAIAQATQGLGEH-STLVDILTRALAE 520 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 +LP RDGGF+R A LDE +SL+ + + L+ +YAEET I+ LKI+HNN +G+ Sbjct: 521 ELPLLARDGGFIRPEFHAGLDELKSLKAEGNAHLMRLERRYAEETGIQALKIRHNNIIGH 580 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 IEV + A L ++ FIHRQTM+N R+TT ELI+L ++T A + AL +E Sbjct: 581 HIEVPAKQADKLDEN------FIHRQTMANAARYTTTELIELAGKLTGAADRALAMEQHL 634 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 F L + ++ + +A+ +A +D++ ALA LA +N+ RP++D+S F++ GRHP+ Sbjct: 635 FSQLVGEVTGRAHDIADAAASLAALDVAAALAELASAENWARPVVDDSHAFVIDGGRHPV 694 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE L+ + F+ANDCDLS N +LWL+TGPNM GKSTFLRQNA+I I+AQMG+ Sbjct: 695 VEAALRAVNHSAFVANDCDLSAGN-----RLWLITGPNMAGKSTFLRQNAVIAILAQMGA 749 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA A IG+VD+LFSRVG+AD+LA GRSTFMVEM+ETA+ILNQ+ ++ VILDEIGRG Sbjct: 750 FVPARAARIGVVDRLFSRVGAADDLARGRSTFMVEMVETAAILNQSGPRALVILDEIGRG 809 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 TAT DGLSIAW+ +E+LHE NRCR L ATH+HELT LS L+ ++V + ++F Sbjct: 810 TATFDGLSIAWSVVEHLHEVNRCRALFATHYHELTSLSGRLRDLSCRQMRVKEWQGDVVF 869 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN-----QKDMRLYYPE 856 LH+V G AD SYGI VG+LAGLP V++RA ++L EK + D+ L+ Sbjct: 870 LHEVAQGAADRSYGIHVGRLAGLPPAVVARAEEVLSALEKGEQGSAVAKLADDLPLFAAL 929 Query: 857 IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + K K +++ EK+K +N DE+SP AL LY +K Sbjct: 930 AKPK-PKESVAAEPSPLAEKLKEINPDELSPRQALDLLYDLK 970 >gi|83309386|ref|YP_419650.1| DNA mismatch repair protein MutS [Magnetospirillum magneticum AMB-1] gi|82944227|dbj|BAE49091.1| Mismatch repair ATPase [Magnetospirillum magneticum AMB-1] Length = 868 Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/879 (44%), Positives = 551/879 (62%), Gaps = 22/879 (2%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY+ IK +PD L+FYRMGDFYELFFDDA+ AS L I LTKRGKH G+DI MCGVP Sbjct: 1 MMAQYLAIKRAHPDCLLFYRMGDFYELFFDDAVKASAALDIALTKRGKHAGEDIAMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 V Y+ KL++ G ++AI EQ+E P EAKKRG+KS+V R+VVR++T GTLTED LL Sbjct: 61 VRAYEAYLAKLVRSGFKVAIGEQMEDPAEAKKRGSKSVVARDVVRVITAGTLTEDTLLDA 120 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHA 207 NYL AVA + +AW+D+STG F + L + + R+ P E++ S++ L A Sbjct: 121 RSHNYLAAVAEAQGTLGLAWVDVSTGDFAMQAIAPKTLAAALARLSPGELLVSDRLLGAA 180 Query: 208 EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYI 267 ++ ++ NV P FD S R+ Y + +D FG+FS+ E A A + Y+ Sbjct: 181 DFFDVWADWKNVLSPLPTARFDSENSRRRLEALYGVGALDGFGAFSRAELAAGGALVDYV 240 Query: 268 KKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGG 327 + TQ P + P+R + + ID+A R NLE+ TLSG R SLL TID ++TGAG Sbjct: 241 ELTQKGKLPRLSLPKRLAEGAVMEIDAATRRNLELAETLSGERRGSLLATIDRTVTGAGA 300 Query: 328 RLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGE 387 RL A ++A+PLTD I RLD + FF+++ + +++ LK PDV R+LSRL +GRG Sbjct: 301 RLLAAQLAAPLTDPHAIEWRLDMVGFFVEHESVRAQLRETLKRCPDVERALSRLSLGRGG 360 Query: 388 PKDIAVIRDGIRSGINILNLFLKN---DLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLP 444 P+D+A +RD + + I L + + D P + +L + +L L L+ DLP Sbjct: 361 PRDLANVRDAL-AEIPALRMLVTQSHLDTPPGINQCARELGE-HSALVDRLQRALAPDLP 418 Query: 445 TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIE 504 RDGGF+ G LDE + L+ +S ++ L+ +Y +ET I +LKI+HNN +G+ IE Sbjct: 419 LNARDGGFIAQGYHEGLDELKGLKTESNGLMMRLEKRYQDETGIASLKIRHNNIIGHHIE 478 Query: 505 VTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEI 564 V S A L + +IHRQTM+N R+TT ELI+L +IT A + AL +E+E Sbjct: 479 VPSKQADRLGEG------YIHRQTMANAARYTTTELIELAGKITGAADRALALEMELLAD 532 Query: 565 LSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEK 624 L + ++ + A+ +A +D + AL +A + RP +D+ST F ++ RHP+VE Sbjct: 533 LIGEVTARAAEIALAAAALAGLDCASALGEMASSARWSRPRVDDSTAFDIRGARHPVVEA 592 Query: 625 TLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684 L+ S PF+ANDCDL+ +S +LWL+TGPNM GKSTFLRQNA+I I+AQMGS+VP Sbjct: 593 ALEAARSGPFVANDCDLA-----DSQRLWLVTGPNMAGKSTFLRQNAVIAILAQMGSFVP 647 Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744 A H+G+VD+LFSRVG+AD+LA GRSTFMVEM+ETA+ILNQA ++ VILDEIGRGTAT Sbjct: 648 AESVHMGVVDRLFSRVGAADDLARGRSTFMVEMVETAAILNQAGPRALVILDEIGRGTAT 707 Query: 745 LDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHK 804 DGLSIAWA +E+LHE NRCR L ATH+HELT L+ L ++V + ++FLH+ Sbjct: 708 FDGLSIAWAVVEHLHEVNRCRALFATHYHELTRLTSRLAALSCHMMRVKEWQGDVVFLHE 767 Query: 805 VIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN-----QKDMRLYYPEIQT 859 V G AD SYGI V +LAGLP V+ RA ++L EK + D+ L+ + Sbjct: 768 VGAGAADRSYGIHVARLAGLPPAVVGRAEEVLGILEKSDQASGMARLADDLPLFAALAKP 827 Query: 860 KESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + L + L E +K +N D+++ AL +Y +K Sbjct: 828 RPAATALPQASPL-EEALKAVNPDDLTARQALDLVYELK 865 >gi|254295440|ref|YP_003061463.1| DNA mismatch repair protein MutS [Hirschia baltica ATCC 49814] gi|254043971|gb|ACT60766.1| DNA mismatch repair protein MutS [Hirschia baltica ATCC 49814] Length = 897 Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/893 (44%), Positives = 561/893 (62%), Gaps = 31/893 (3%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 KS +P + QY+EIK + D+L+F+RMGDFYELFF+DA +A+ L ITLT RG+H G+ IP Sbjct: 15 KSPSPFLLQYLEIKERHKDALLFFRMGDFYELFFEDAQIAAEALDITLTARGQHSGEPIP 74 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H A Y+ KLI+ GH +A+CEQ+E+P EAKKRG+KS+V R+VVR+VTPGTLTED Sbjct: 75 MAGVPFHAAEGYLAKLIRSGHCVAVCEQLETPEEAKKRGSKSVVNRDVVRIVTPGTLTED 134 Query: 143 QLLSPTDSNYLMA--VARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 LL SN L A V+ E IA D+STG F++ + + + + P+E++ S Sbjct: 135 SLLDARSSNILAAIGVSAGGIEGGIALADVSTGRFEVFETAPEAFGEVLASLAPKELLMS 194 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 + ++ ++ E+L +P D E ++ D + ++D FGSFS E +A Sbjct: 195 DSVMARPLISNMLESLKTAVTPRPGAKADKVSGERQLKDTLGVKSLDAFGSFSNAELSAC 254 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 A + Y+ TQ P + P+R S + ID A RS+LEI + GSR+ SLL TID Sbjct: 255 ALLLDYLHLTQAGETPRLDPPKRHLSSSFMAIDPATRSSLEIDVSAQGSRKGSLLSTIDC 314 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 +IT G R A+ ++ PL D IN RLD+++ F+ + L ++K L+ S D+ R+ R Sbjct: 315 TITAPGARRLADNLSRPLIDLVSINCRLDAVSLFVSDRDLREEVRKALRDSADIERARMR 374 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKN--DLPEELRGAVEKLKKLPQ----SLEKT 434 L++GRG PKD+ + G++SG L LP L A L Q + +T Sbjct: 375 LQLGRGGPKDLRALALGLKSGALAARLLRSGIAGLPSLLDEACTVLDLEQQEELAAFAQT 434 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L + + +D P RDGGF+ G D SLDE RSLRD S++IIA LQ YAE+T I +LKI+ Sbjct: 435 LETAIKEDSPVLARDGGFIATGYDPSLDEVRSLRDDSRKIIAGLQADYAEKTGIPSLKIR 494 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 HN LGYFI+VT+ +AS ++ + D FIHRQT+++ RFTT EL DL+ RI A Sbjct: 495 HNKVLGYFIDVTTRNASAMQNGPHASD-FIHRQTLASAMRFTTTELGDLDGRIARAEEEG 553 Query: 555 LLIELESFEILSNAIIEQSESLDN----ASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 E+E F NA++ ++E+L + A+ +A ID++ LA A++ RP ++NST Sbjct: 554 KAREMEIF----NALVLEAENLSSKLRAAADALAAIDVAAGLAQWAEDNRAIRPQLNNST 609 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 F RHP+VE +L++ + F ANDC L + ++ +L ++TGPNM GKST+LRQN Sbjct: 610 QFNAVGARHPVVEASLRK-AGDGFTANDCCLDA-SGGDTARLMMITGPNMAGKSTYLRQN 667 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 AL+ IMAQ G +VPA +G+VD++FSRVG++D+L+ GRSTFMVEMIETA+ILNQA + Sbjct: 668 ALLAIMAQAGCFVPAQKFELGLVDRVFSRVGASDDLSRGRSTFMVEMIETAAILNQAGPK 727 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 +FVILDE+GRGTAT DGL+IAWA +E+LHE N+CR L ATH+HELTDL++ L NA+L Sbjct: 728 AFVILDEVGRGTATYDGLAIAWAAVEHLHEKNKCRALFATHYHELTDLAEKLSHAGNASL 787 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ--- 847 + D ++FLH V PG AD SYG+QV KLAG+P + RA ++L E Sbjct: 788 RAKDWQGDLVFLHDVKPGPADRSYGVQVAKLAGMPRDAVKRAEEVLLRLEGEAQKGGFQL 847 Query: 848 KDMRLYYPEIQTKESKNNL--SKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 D+ L+ E NL S+ +K+ V+ +++D ++P AL+ LYA+K Sbjct: 848 DDLPLF---AAVAEPAPNLVPSEVEKMLVD----VDVDGITPREALEILYAMK 893 >gi|114571560|ref|YP_758240.1| DNA mismatch repair protein MutS [Maricaulis maris MCS10] gi|122314905|sp|Q0AK91|MUTS_MARMM RecName: Full=DNA mismatch repair protein mutS gi|114342022|gb|ABI67302.1| DNA mismatch repair protein MutS [Maricaulis maris MCS10] Length = 897 Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/896 (43%), Positives = 546/896 (60%), Gaps = 37/896 (4%) Query: 23 KSSTPMMRQYIEIKSINP-DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + +TPMM+Q++E+++ P D+L+FYRMGDFYELFFDDA+ AS L I LTKRG+H G+ I Sbjct: 19 EGATPMMQQFLELRAQAPADALLFYRMGDFYELFFDDAVRASAALDIALTKRGEHQGEPI 78 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRG-NKSLVRRNVVRLVTPGTLT 140 MCGVP TA Y+ +LIK G ++A+ EQ+E P AK RG +K++VRR + R+VTPGTLT Sbjct: 79 SMCGVPAATAEAYLARLIKAGFKVAVGEQMEDPKTAKARGGSKAVVRRAITRVVTPGTLT 138 Query: 141 EDQLLSPTDSNYLMAVARIRT-EWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 ED LL P SN + A+A++ T E A+AW D+STG F++S + L ++I + P E++ Sbjct: 139 EDSLLDPRVSNRIAALAQLVTGEAALAWADVSTGDFRVSPVATENLAAEIAAMSPAELLV 198 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 E+ + A + TL + P FD S +E ++ D + + + FG+F++ E A Sbjct: 199 EERGFAEAAMLAPRSTLTPL----PKAKFDPSSAERQLKDQFRVQELTAFGNFTKAECAA 254 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A + Y+ +Q + P + + L ID A R++LEI RTLSGSR+ SLL ID Sbjct: 255 LGALLDYLSLSQAGAPAKLAPPRQVAAGACLAIDPATRASLEIERTLSGSRQGSLLDAID 314 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 ++T G R AER+A PLT+ +I RLD+I +F + ++ L+ + D R+LS Sbjct: 315 RTVTAPGARKLAERLARPLTNVAEIEARLDAIAWFERARPERRDLRDRLRQAGDAERALS 374 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKN--DLP-----EELRGAVEKLKKLPQSLE 432 RL +GRG P+D+ + ++ G I + L D P E L V K L Sbjct: 375 RLLLGRGGPRDLKSLAAALQEGEIIASRLLDRTLDTPPTLISEGLEALVLGDKPELAELI 434 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 L + D+ P RDGGF+ +G LDE R LRD S+R++A LQ YAE + LK Sbjct: 435 AELERAIVDEPPLLARDGGFIAEGWQVELDELRQLRDASRRVVAGLQQTYAEAVGVSALK 494 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 IKHNN LGYF+EVT+ L D DRFIHRQTM+N RF+T EL +LE +I +A + Sbjct: 495 IKHNNVLGYFVEVTAKHGDALMGD----DRFIHRQTMANAIRFSTTELAELEAKIASAGD 550 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 AL +E+++F L + + Q++ + A++ +A D++ +LA A++ RP++ + F Sbjct: 551 RALAMEIDAFAGLRDRVEAQADLIRGAARALAEFDVAASLAEWAEDSEAARPVMSQDSVF 610 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 ++ GRHP+VE+ L + F NDC L ++ + +L +TGPNM GKSTFLRQNAL Sbjct: 611 HIEGGRHPVVERALAKAGDGRFTPNDCHLDGAGEE-AKRLTFVTGPNMAGKSTFLRQNAL 669 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 I+++AQ G YVPA A IG+ D+L+SRVG+AD+LA GRSTFM EMIETA+ILNQAT +SF Sbjct: 670 ILMLAQAGCYVPARAARIGVADRLYSRVGAADDLARGRSTFMAEMIETAAILNQATARSF 729 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 VILDEIGRGTAT DGLSIAWA E+LH N CR L ATH+HELT L+ L N +L+ Sbjct: 730 VILDEIGRGTATFDGLSIAWAAAEHLHAVNGCRALFATHYHELTRLADDLDAAGNVSLKA 789 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK--LYHHNQKDM 850 + ++FLH+V G AD SYGI+V + AGLP + RA IL E D+ Sbjct: 790 REWKGELVFLHEVGSGAADRSYGIEVARRAGLPRVSVKRAQAILARLEADGAPAAALTDL 849 Query: 851 RLYY-----PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWT 901 L+ PE E + L + D D +SP AL+ LYA+KA T Sbjct: 850 PLFALSEPEPEPVISEVETRLGEIDP-----------DALSPREALEVLYALKAMT 894 >gi|83945036|ref|ZP_00957402.1| DNA mismatch repair protein [Oceanicaulis alexandrii HTCC2633] gi|83851818|gb|EAP89673.1| DNA mismatch repair protein [Oceanicaulis alexandrii HTCC2633] Length = 895 Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/890 (43%), Positives = 552/890 (62%), Gaps = 26/890 (2%) Query: 23 KSSTPMMRQYIEIKSINP-DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + TPMM Q++E+++ P D+L+FYRMGDFYELFFDDA+ AS L I LTKRG+H G+ + Sbjct: 19 EGGTPMMVQFLELRAEAPLDALLFYRMGDFYELFFDDAVRASEALDIALTKRGEHQGEPV 78 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 MCGVPVH A Y+ +LIK G ++A+ EQ+E P EAKKRG KS+VRR + R+VTPGTLTE Sbjct: 79 SMCGVPVHNAQIYLSRLIKAGFKVAVGEQLEDPAEAKKRGAKSVVRRGITRIVTPGTLTE 138 Query: 142 DQLLSPTDSNYLMAVARIRT-EWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 D LL +N + A+ R+ + E A+AW D+S G F + + + L +++ ++P EI+ + Sbjct: 139 DDLLDARAANRIAAMTRLASGEAALAWADVSDGEFAAMSVDANGLEAELAALNPSEILCA 198 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVF--FDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + E L L AV P FD E R+ + + ++D FG+FS+ E + Sbjct: 199 D------EDARLASELAPHAVITPRARAKFDSGAGERRLKQRFEVQSLDGFGAFSKAELS 252 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 A + + Y++ +Q + P+ + + ID AAR +LEI RTL GSR+ SL+ I Sbjct: 253 ALGSLLDYLELSQAGAPARLRPPQSLPSGAAMVIDPAARMSLEIDRTLQGSRKGSLIDAI 312 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D ++T G RL A+R+A P +I+ RLD+ +F++N L ++ LK++ D R L Sbjct: 313 DRTLTAPGARLLADRLARPSMSLPEIHDRLDAAQYFLENRSLREQTRERLKAAGDPARCL 372 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDL---PEELRGAVEKLK--KLPQ--SL 431 SRL +GRG P+D+A + ++ G ++ F K+ L P + A+ L + P+ SL Sbjct: 373 SRLLLGRGGPRDLAQLSRALKEGEKLIAGFAKDPLNAPPALIDRALNALSLAQNPELASL 432 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + S L + P RDGGF+ G +LDE R LRD S+RI+A LQ YAE++ + L Sbjct: 433 VQETSQALVAEPPLLARDGGFIAPGWTPALDEARKLRDDSRRIVAGLQATYAEQSGVSAL 492 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 K+KHNN LGYFIEV++ +A L D D FIHRQTM+N RF+T EL +LE +I A Sbjct: 493 KVKHNNVLGYFIEVSAKNADALMGD----DAFIHRQTMANAVRFSTPELGELEAKIAQAG 548 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 AL +ELE FE + I + A++ +A +D++ A A A+E RP +++S Sbjct: 549 ERALALELEIFEAFRSRIEALDAPIRRAAEALASLDVAAATAHWAEETGAERPQVEDSLA 608 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 F ++ GRHP+VE+ L++ F N C L ++ +L L+TGPNM GKSTFLRQNA Sbjct: 609 FDIEGGRHPVVERALERSGEGRFTPNGCHLDGAGGEHP-RLMLVTGPNMAGKSTFLRQNA 667 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 L+ I+AQ G YVPA A IG+VD+LFSRVG+AD+L+ GRSTFM EMIETA+ILNQA ++ Sbjct: 668 LMAILAQAGLYVPAKSARIGLVDRLFSRVGAADDLSRGRSTFMAEMIETAAILNQAGPRA 727 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 VILDEIGRGTAT DGLSIAW+ +E+LHE NR R L ATH+HELT L++ L N++L+ Sbjct: 728 LVILDEIGRGTATFDGLSIAWSAVEHLHEVNRSRALFATHYHELTRLAEELDAAGNSSLK 787 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR 851 + +IFLH+V G AD SYG++V K AGLP + RA +IL E Sbjct: 788 AKEWKGELIFLHEVQKGPADRSYGVEVAKRAGLPKAAVKRAQEILDRLESDDAPAAALAD 847 Query: 852 LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWT 901 L + E + S+ + E++K ++ D ++P AL LYA+KA + Sbjct: 848 LPLFSALSVEPETKPSEVE----ERLKGIDPDSLTPREALDVLYALKALS 893 >gi|312112898|ref|YP_004010494.1| DNA mismatch repair protein MutS [Rhodomicrobium vannielii ATCC 17100] gi|311218027|gb|ADP69395.1| DNA mismatch repair protein MutS [Rhodomicrobium vannielii ATCC 17100] Length = 928 Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/889 (44%), Positives = 560/889 (62%), Gaps = 24/889 (2%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM QY+++K+ NPD L+FYRMGDF+ELFFDDA+ A+ LGI LTKRGKH G+DIPMC Sbjct: 46 ATPMMAQYLDVKAKNPDFLLFYRMGDFFELFFDDAVKAASALGIQLTKRGKHSGEDIPMC 105 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVPV A+ Y+QKLI G R+A+ EQ+E P AKKRG K++VRR+VVRLVTPGTLTED L Sbjct: 106 GVPVARADDYMQKLILKGFRVAVAEQLEDPELAKKRGPKAVVRRDVVRLVTPGTLTEDAL 165 Query: 145 LSPTDSNYLMAVARI----RTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 L +N+L A+A++ + IA +DISTG F +S ++ L +++R+ P EI+ + Sbjct: 166 LVSGRNNFLAALAKVGKAVAVRYHIAALDISTGEFLLSEASAPDLGGELLRLRPAEILIA 225 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 E EL K+ E G F + E + + + + +D G F+ + A Sbjct: 226 EDELGDGTSKAAAEASGAALSPLSRACFGRAKGERALKEAFEVAALDGLGDFTDGDLIAI 285 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 A + Y+ TQM +P + P R++ + ID+A R++LE++R + ++ ID Sbjct: 286 GALLHYVDLTQMGERPALRPPRRDEPARLMAIDAATRASLELVRP-NNEGAPTVFSAIDR 344 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 ++T AG R R+ SP DS +N RLD++ I++ L I+ ILK++PD+ R+LSR Sbjct: 345 TVTAAGARELMSRLVSPSADSGLVNERLDAVAALIEDWALRERIRHILKTAPDMSRALSR 404 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDL-PEELRGAVEKLKKLPQ-----SLEKT 434 LK+ RG P+D+ IRDG+R+G ++ L + P L+ A+ L +L + Sbjct: 405 LKLKRGGPRDLGAIRDGLRAGGDVAALLAASPAQPAHLKQAMTALAAFTGDDHGGALARK 464 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L L +P +D G++ G DA+LD R L SK ++A LQ YA +T +K LKI+ Sbjct: 465 LDRALVGVVPFLTKDSGYIATGFDATLDGLRELASSSKVVLAKLQADYAAQTGVKTLKIQ 524 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +NN GYFIEV+ AS L + S F H+QT+++ RFTT EL LE+RI A A Sbjct: 525 YNNVFGYFIEVSPGQASALMGEPHSA-LFRHKQTLASAVRFTTDELAALESRILTAQGDA 583 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L E F LS+A++E+ +++ A+Q +A +D LA +A+ QNY RP +D S F+V Sbjct: 584 LAREQALFAELSDAVLEREDAIAEAAQALACLDCVGGLAEIAQVQNYVRPRVDTSRAFLV 643 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 + GRHP VE+ L ++ FI NDC L ++ G L ++TGPNM GKST+LRQNALI Sbjct: 644 EGGRHPAVEQALTREGGA-FIGNDCRLDGAGERAPGFL-VVTGPNMAGKSTYLRQNALIA 701 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++AQMGSYVPA+ AHIG+ D+LF+R+G+AD+LA GRSTFMVEM ETA+ILN+AT +S VI Sbjct: 702 VLAQMGSYVPATSAHIGVADRLFARIGAADDLARGRSTFMVEMTETAAILNRATERSLVI 761 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDEIGRGTAT DGLSIAWA +E+LH+ RCRGL+ATH+HELT L+ L R N + V++ Sbjct: 762 LDEIGRGTATFDGLSIAWAVLEHLHDETRCRGLVATHYHELTRLADDLPRAGNVRMAVTE 821 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----D 849 + I+FLH V G A+ SYG+Q KLAG+P V++RA IL E + D Sbjct: 822 WKDTIVFLHAVEVGPANRSYGVQAAKLAGVPKQVVARAKQILAQLEAGAGPHGPLTLPTD 881 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 M L+ + ++ + +E++ L++D +SP AL LYA+K Sbjct: 882 MPLFSAPV-----AHHATDAPHPVLERLATLDVDSLSPREALDLLYALK 925 >gi|167643981|ref|YP_001681644.1| DNA mismatch repair protein MutS [Caulobacter sp. K31] gi|189030707|sp|B0T142|MUTS_CAUSK RecName: Full=DNA mismatch repair protein mutS gi|167346411|gb|ABZ69146.1| DNA mismatch repair protein MutS [Caulobacter sp. K31] Length = 904 Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/902 (41%), Positives = 549/902 (60%), Gaps = 43/902 (4%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 +TP+M+Q+ E+K+ +PD+L+F+RMGDFYELFFDDA A+ LGI+ T RG H G+ IPM Sbjct: 16 GATPVMQQFFEMKARHPDALIFFRMGDFYELFFDDAYKAAAALGISQTFRGTHNGQPIPM 75 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H A Y+ KLI++G ++A+CEQ+E P EA+KRG+KS+VRR++VR+VTPGTLTED Sbjct: 76 AGVPQHAAEAYLSKLIRLGFKVAVCEQMEDPAEARKRGSKSVVRRDIVRVVTPGTLTEDG 135 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 LL +N L AVA + A+A +++STG + D + + + + P E + +++ Sbjct: 136 LLDARGANRLAAVAIRAGQAAVAAVELSTGEVECFLVAKDAVGAILAALAPSETLVADRL 195 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 LS + G + P+ + SE+R+ Y + T+D FG S E A Sbjct: 196 LSDDLLAQTLKICGGLIQPMPSALSEPQASETRVKRLYGVDTLDGFGGLSAAEIGALGLI 255 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 ++++ TQ P + P R + ID A RS+LEI R +G R SLL ID ++T Sbjct: 256 AAHLEMTQAGKLPALRAPRRAAEADVMSIDPATRSSLEIDRAQNGDRSGSLLAAIDRTVT 315 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G R+ A R+A PL D I+ RLD++ +F+ + L ++++LK + D+ R+LSRL + Sbjct: 316 AGGARMLASRLARPLLDPHAIDARLDAVEWFVDHRGLRERLREVLKGAGDMARALSRLAL 375 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKND-----LPEELRGAVEKLKKLPQSLEKTLSSM 438 GRG P+D+ ++DG+++G + + + P +L GA LK L SL++ LS + Sbjct: 376 GRGGPRDLGCLKDGLKTGEKLAGMVGGSGDPLSPPPAQLEGA---LKALTPSLQEGLSRL 432 Query: 439 LSD-------DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 L+ DLP RDGG++ G LD+ R+LRD S+R++A+L+ + +E+ + L Sbjct: 433 LAQLETGLGPDLPALARDGGYVAAGVRPELDQARALRDDSRRVVAALESRLIQESGVP-L 491 Query: 492 KIKHNNNLGYFIEVTSSSASVL-KKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 KI+HN LGYF+E T+ A L + L + FIHRQT++N RFTT+EL DL+ RI A Sbjct: 492 KIRHNGVLGYFVEATAGKADPLFQPPLNAT--FIHRQTLANQVRFTTVELADLDARIAQA 549 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 AL +E+ +FE + +E + A++ +A +D++ ALA A++ RP +D S Sbjct: 550 AERALAMEVAAFEDWRAEAVALAEPIQLAAEALAKLDVAAALAEWAEDAGAVRPSVDKSL 609 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 F + RHP+VE +K ++ P+ NDC L ++ + +L ++TGPNM GKSTFLRQN Sbjct: 610 AFEARAARHPVVEAAVK-RAGDPYTPNDCCLDAAGERGA-RLSIVTGPNMAGKSTFLRQN 667 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 A++ I+AQ G YVPA +G++D+LFSRVG+ D+LA GRSTFM+EM+ETA+IL QA+ + Sbjct: 668 AILAILAQSGCYVPAKSLRLGVIDRLFSRVGAGDDLARGRSTFMMEMVETAAILTQASPR 727 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S VILDEIGRGTAT DGL+IAWA E LH+TNRCR L ATH+HEL L L N +L Sbjct: 728 SLVILDEIGRGTATYDGLAIAWACAEALHDTNRCRALFATHYHELATLETRLAHVSNLSL 787 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK--------- 841 + + N ++FLH+ G AD SYG+QV KLAG+P V++RA ++L E Sbjct: 788 RAKEWNGDLVFLHEAAAGPADRSYGVQVAKLAGVPPAVVARAKEVLDRLESKTESPARLD 847 Query: 842 ----LYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAV 897 H + + +Q S+ + + D L++D MSP AL LY + Sbjct: 848 DLPLFASHAPGPLNQFGAPVQAAPSRTDAALGD---------LDVDGMSPREALDALYRL 898 Query: 898 KA 899 KA Sbjct: 899 KA 900 >gi|315497086|ref|YP_004085890.1| DNA mismatch repair protein muts [Asticcacaulis excentricus CB 48] gi|315415098|gb|ADU11739.1| DNA mismatch repair protein MutS [Asticcacaulis excentricus CB 48] Length = 901 Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/899 (42%), Positives = 542/899 (60%), Gaps = 17/899 (1%) Query: 13 SEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTK 72 S + DL+ L +TP+M QY+E+K+ NP SL+F+RMGDFYELFF+DA A+ L + LTK Sbjct: 6 SPEKDLKAQLDGATPVMAQYLEVKAANPGSLLFFRMGDFYELFFEDAEQAAGALSLALTK 65 Query: 73 RGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVR 132 RGKH G+DIPM GVP H A YI KLI++G R+AIC+Q+E P EAKKRG K++V+R + R Sbjct: 66 RGKHQGEDIPMAGVPAHAAEAYIAKLIRMGFRVAICDQLEDPSEAKKRGYKAVVKRGITR 125 Query: 133 LVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRI 192 +VTPGTLTE+ LL +N L+A+++ A+A +++STG + + L + + + Sbjct: 126 IVTPGTLTEESLLEERGANRLVALSQRAGVMALASLELSTGEVECLELTPETLGTHLSAL 185 Query: 193 DPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSF 252 P E + S++ L +L + G QP D + E+R+ Y + T+D FG+F Sbjct: 186 RPSESLVSDRILQDENLYALLKYCGGAIQPQPASLSDPAAGEARLKRLYGVETLDGFGAF 245 Query: 253 SQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 S E +A +YI TQ P + P + + L ID + R +LEI RT GSRE Sbjct: 246 SPAELSALGMLAAYIDLTQAGKAPLLKAPRKVASLAYLAIDPSTRLSLEIERTQKGSREG 305 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 SL+ ID +IT G RL A R++ PL + +IN RLD + +F+ L ++ L+ Sbjct: 306 SLMSAIDRTITSGGSRLLAARLSRPLNNPVEINRRLDGVQWFLAQRTLRQEVRGRLRGMS 365 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN--------DLPEELRGAVEKL 424 D+ R+LSRL +GRG P+D+ VIRD + +++ L N D P E+ VE L Sbjct: 366 DMARALSRLGLGRGGPRDLKVIRDCLDLAKDLVGLLQPNDPETRLDPDWPAEIHAHVEAL 425 Query: 425 KKLPQSLEK--TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L+ L + L D+ P RDGGF++ G D +L + SLR+ S++II ++ Sbjct: 426 TASQNVLDLLFKLDTALVDEPPLSTRDGGFIKPGYDTNLQDAISLRNDSRQIILRMESDL 485 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 +ET + LKIK+N LGYFIE+T+ A L + RFIHRQT++N RF+T +LID Sbjct: 486 QQETGLP-LKIKYNAVLGYFIELTAKQAEALSD--THRQRFIHRQTLANQMRFSTPDLID 542 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 L+ RI A + AL +EL FE L + + L + +D++ A A A++ Sbjct: 543 LDARIARAGSDALNLELAIFEDLREEVRRNAHPLQDMFDAFCALDVAAAAAEWAEDLEAT 602 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 RP++D+S F K RHP+V L+ + KPF NDC L + ++ +L L+TGPNM G Sbjct: 603 RPVVDDSLVFDAKGARHPVVVAALRTE-GKPFTPNDCCLDA-SGQSGPRLDLVTGPNMAG 660 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KSTFLRQNAL+VI AQ G +VPA+ +G+VD+LFSRVG+ D+LA GRSTFM+EM+ETA+ Sbjct: 661 KSTFLRQNALLVITAQAGLFVPAASFRLGVVDRLFSRVGAGDDLAQGRSTFMMEMVETAA 720 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL QAT +SFVILDEIGRGTAT DGL+IAWA E LHE + R L ATH+HEL L L Sbjct: 721 ILTQATQRSFVILDEIGRGTATFDGLAIAWACAENLHEVVKARALFATHYHELAQLESLL 780 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 HN ++ + N +IFLH+ G AD SYG+QV +LAG+P V++RA DIL+ E Sbjct: 781 AHTHNISMTAREWNGELIFLHEAKRGAADRSYGVQVARLAGMPPVVVARAKDILERLETD 840 Query: 843 YHHNQK--DMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 H K D+ L+ + + +K +N D++SP AL+ +Y ++ Sbjct: 841 KAHQLKLDDLPLFATVQAQVAVAAVQKPAETELEKAVKGINPDDLSPREALEVIYRLRG 899 >gi|329891105|ref|ZP_08269448.1| DNA mismatch repair protein MutS [Brevundimonas diminuta ATCC 11568] gi|328846406|gb|EGF95970.1| DNA mismatch repair protein MutS [Brevundimonas diminuta ATCC 11568] Length = 875 Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/885 (41%), Positives = 544/885 (61%), Gaps = 30/885 (3%) Query: 29 MRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPV 88 M QY+ +K+ P++++F+RMGDFYELFF+DA A+ LGI LTKRGKH G+DIPM GVPV Sbjct: 1 MAQYLSVKAGQPEAMLFFRMGDFYELFFEDAQKAAAALGIALTKRGKHQGEDIPMAGVPV 60 Query: 89 HTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPT 148 H + Y+ +LI+ G ++A+CEQ+E P EAKKRG+K++V R++VR+VTPGTLTED LL Sbjct: 61 HAMDGYLARLIRQGFKVAVCEQLEDPAEAKKRGSKAVVHRDIVRVVTPGTLTEDTLLDAR 120 Query: 149 DSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHAE 208 +N L AVA + A+A +++S G+ + L + + P E++ ++ S Sbjct: 121 GANRLAAVAIRKGRAAVAVVELSAGVVDSVACDLSDLGAALAAFRPSEVLVPDRLFSDET 180 Query: 209 YKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIK 268 K + G V A P + ++ R+ Y ++ +D FG+F + E +A +Y++ Sbjct: 181 MKGALDGSGGVVQAMPQALAEPVGAKDRVQRLYGVSALDGFGAFEEAEISALGLIAAYLE 240 Query: 269 KTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGR 328 TQ P + P R L ID A R +LEI RT G R+ SLL ID ++T G R Sbjct: 241 TTQAGKIPALTPPRRSGESGFLAIDPATRLSLEIDRTQRGERDGSLLHAIDRTVTSGGAR 300 Query: 329 LFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEP 388 AER++ PL D IN LD++ + ++ L +++ L++S DV R+ SRL +GRG P Sbjct: 301 ALAERVSRPLRDPGAINAGLDAVEWLLERRDLRRDLRESLRASADVARATSRLALGRGGP 360 Query: 389 KDIAVIRDGIRSGINILNLF--LKND----LPEELRGAVEKLKKLPQSLEKTLSSMLS-- 440 +D+A IR G+++ + LF ND P + +++L +LE LS +L+ Sbjct: 361 RDLAAIRSGLKTAQGLSALFAAAANDPLAGPPARVTACLDRL-----ALEGDLSHLLAEL 415 Query: 441 -----DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 ++ P RDGG++ G LD R+LRD S+++IA L+ K ++ + K++H Sbjct: 416 TDGLMEEPPHLARDGGYVNPGHRPELDAARTLRDDSRKVIAELEAKAVADSGVA-FKVRH 474 Query: 496 NNNLGYFIEVTSSSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N LGYF+E ++ +A +L+ +S FIHRQT++N RFTT+EL +L+ +I+ A + A Sbjct: 475 NAVLGYFLETSARAAEPLLRAGPDSP--FIHRQTLANQVRFTTVELSELDAKISQAGHRA 532 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L IE E+FE + + L ++ +A +D AL+ A+E RP +D+S F V Sbjct: 533 LAIEAETFEGWRREVARLAGPLQGVAEALAELDAHAALSEWAEEVGAVRPAVDDSLCFAV 592 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 + GRHP+VE +K Q P+ N+C L+ + + +L ++TGPNM GKSTFLRQNAL+V Sbjct: 593 EAGRHPVVEAAVKAQ-GLPYTPNNCQLAG-DGVGASRLSIVTGPNMAGKSTFLRQNALLV 650 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++AQ G++VPA +G+VD+LFSRVG+ D+LA GRSTFM+EM+ETA+IL QAT +SFV+ Sbjct: 651 VLAQAGAFVPARSMKLGVVDRLFSRVGAGDDLARGRSTFMMEMVETAAILTQATGRSFVV 710 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDEIGRGTAT DGL+IAWAT E LHETNR R L ATH+HEL L + L N +++ + Sbjct: 711 LDEIGRGTATYDGLAIAWATAEALHETNRARTLFATHYHELAQLEERLDHVCNLSMKARE 770 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL-Y 853 N ++FLH+ PG AD SYG+QV +LAG+P V+ RA ++L E+L + RL Sbjct: 771 WNGELVFLHEAAPGAADRSYGVQVARLAGVPTAVVGRAREVL---ERLENEKAATARLDD 827 Query: 854 YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P E K+ + E + ++ D+++P AL+ LY +K Sbjct: 828 LPLFAAAEPPPPPMKS--MLDEAVAAIDPDDLTPREALEALYRLK 870 >gi|16124268|ref|NP_418832.1| DNA mismatch repair protein [Caulobacter crescentus CB15] gi|221232951|ref|YP_002515387.1| DNA mismatch repair protein MutS [Caulobacter crescentus NA1000] gi|44888239|sp|Q9AC54|MUTS_CAUCR RecName: Full=DNA mismatch repair protein mutS gi|13421100|gb|AAK22000.1| DNA mismatch repair protein MutS [Caulobacter crescentus CB15] gi|220962123|gb|ACL93479.1| DNA mismatch repair protein MutS [Caulobacter crescentus NA1000] Length = 903 Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/887 (42%), Positives = 542/887 (61%), Gaps = 17/887 (1%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 +TP+M Q+ E+K+ PD+L+F+RMGDFYELFFDDA A+ LGI+ T RG H G+ IPM Sbjct: 17 GATPVMAQFFEMKARQPDALIFFRMGDFYELFFDDAYKAAAALGISQTFRGTHNGQPIPM 76 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H A Y+ KLI++G ++A+CEQ+E P EAKKRG+K++VRR++VR+VTPGTLTED Sbjct: 77 AGVPQHAAEAYLSKLIRLGFKVAVCEQMEDPAEAKKRGSKAVVRRDIVRVVTPGTLTEDG 136 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 LL +N L AVA + A+A +++STG ++ + + + + P E + +++ Sbjct: 137 LLDARGANRLAAVALRAGQAAVASVELSTGEVEVLAVAKEGVAPILAALAPSETLVADRL 196 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 LS G + P+ + SE+R+ Y + T+D FG S E A Sbjct: 197 LSDDSLSQTLRICGGLVQPMPSALSEPQASETRVKRLYGVETLDGFGGLSPAEIGALGLI 256 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 ++++ TQ P + P R + ID A RS+LEI RT SG R SLL ID ++T Sbjct: 257 AAHLEMTQAGRLPALRAPRRAADADVMAIDPATRSSLEIDRTQSGDRNGSLLAAIDRTVT 316 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G R+ A R+A PL D I+ RLD++ +F+++ L ++++LK + D+ R+LSRL + Sbjct: 317 AGGARMLASRLARPLLDVAAIDQRLDAVEWFVEHRQLRQRLREVLKGAGDMARALSRLAL 376 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLK-----NDLPEELRGAVEKL-KKLPQSLEKTLSS 437 GRG P+D+ IRD ++ G + + + P EL A + L L + L + L++ Sbjct: 377 GRGGPRDLGCIRDTLKVGERLAGMAGGAPDPLSPPPFELEHAFKALTPALHEGLSQFLTT 436 Query: 438 M---LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + L DLP RDGGF+ G LD+ R LRD S+++IA+L+ + A E+ + LKI+ Sbjct: 437 LEHGLGPDLPALARDGGFVAAGVRPELDQARGLRDDSRKVIAALESQLALESGVP-LKIR 495 Query: 495 HNNNLGYFIEVTSSSASVL-KKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 HN LGYF+E T+ A L + L + FIHRQT++N RFTT+EL DL+ RI A Sbjct: 496 HNGVLGYFVEATAGKADPLFQPPLNAT--FIHRQTLANQVRFTTVELADLDARIAQAAER 553 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E+ +FE ++++ AS+ +A ID++ +LA A++ RP++D S F Sbjct: 554 ALAMEVAAFEDWREQARLLADAIQIASEALARIDVASSLAEWAEDAGAVRPVVDASYAFD 613 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 K RHP+VE +K ++ +P+ NDC L + + + +L ++TGPNM GKSTFLRQNAL+ Sbjct: 614 AKAARHPVVEAAVK-RAGEPYTPNDCRLDA-SGETAARLSIVTGPNMAGKSTFLRQNALL 671 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 I+AQ G YVPA+ +G+VD+LFSRVG+ D+LA GRSTFM+EM+ETASIL QA +S V Sbjct: 672 AILAQSGCYVPAASFRLGVVDRLFSRVGAGDDLARGRSTFMMEMVETASILTQAGPRSLV 731 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ILDEIGRGTAT DGL+IAWA E LH+TNRCR L ATH+HEL L + N +L+ Sbjct: 732 ILDEIGRGTATYDGLAIAWACAEALHDTNRCRALFATHYHELATLETRMAFVSNLSLRAK 791 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK--DMR 851 + N ++FLH+ PG AD SYG+QV KLAG+P V+ RA ++L E K D+ Sbjct: 792 EWNGDLVFLHEAAPGPADRSYGVQVAKLAGVPAPVVVRAREVLDRLESKDQSPAKLDDLP 851 Query: 852 LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 L+ + + L++D MSP AL+ LY +K Sbjct: 852 LFAVSQAVAVTSAPAKAAPSAVETSLADLDVDGMSPREALEALYRLK 898 >gi|302381408|ref|YP_003817231.1| DNA mismatch repair protein MutS [Brevundimonas subvibrioides ATCC 15264] gi|302192036|gb|ADK99607.1| DNA mismatch repair protein MutS [Brevundimonas subvibrioides ATCC 15264] Length = 894 Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/889 (42%), Positives = 545/889 (61%), Gaps = 21/889 (2%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 + L+ +TP+M Q++ K+ PD+++F+RMGDFYELFF DA +A+ +GITLTKRGKH G+ Sbjct: 12 DALEGATPVMAQFLTAKASQPDAILFFRMGDFYELFFRDAEVAAAAIGITLTKRGKHQGE 71 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 DIPMCG+PVH A YI +LI++G ++AICEQ+E P EA+KRG+K++VRR++VR+VTPGTL Sbjct: 72 DIPMCGMPVHAAEGYIARLIRMGFKVAICEQMEDPAEARKRGSKAVVRRDIVRVVTPGTL 131 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 TED LL +N L AVA + A+A +++S G L + + P E++ Sbjct: 132 TEDSLLDARGANRLAAVAIRKGRAAVAVVELSAGAVDCVACEIGDLGATLAAFRPSEVLV 191 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 ++K S + K+ + G V A + + + R+A Y + ++D FG+F + E +A Sbjct: 192 TDKGFSDPDLKAALDGSGGVVQALASAVAEPVAAGGRVARLYGVASLDGFGAFEEAEVSA 251 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 +Y++ TQ P + P R L ID A R +LEI RT G RE SLL +D Sbjct: 252 LGLIAAYLETTQAGKVPALSPPRRSGDAGFLAIDPATRLSLEIDRTQRGEREGSLLACLD 311 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 ++T G R AERIA PL +IN LD++ + ++ L ++ LK+S DV R++S Sbjct: 312 RTVTSGGARALAERIARPLRHPVEINHGLDAVEWLLERRSLRRDLRDGLKASADVARAVS 371 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLF-LKND----LPEELRGAVEKLKKLP--QSLE 432 RL +GRG P+D+ IR G+ + LF L D P + +++L P L Sbjct: 372 RLALGRGGPRDLGAIRAGLTIAEALAGLFTLSPDPLTGPPARIVACLDRLTLSPDLARLM 431 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 L+ L+D+ P RDGGF++ G LD R+LRD S+R++A L+ + E+ + K Sbjct: 432 LDLAGGLADEPPHLARDGGFVKPGFRPELDAARTLRDDSRRVVADLEARAVAESGVP-FK 490 Query: 493 IKHNNNLGYFIEVTSSSASVL-KKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 ++HN LGYF+E TS A L + ES FIHRQT++ RFTT+EL +L+ +I+ A Sbjct: 491 VRHNAVLGYFLETTSKHAEPLFRAGPESP--FIHRQTLAAQVRFTTVELSELDAKISQAG 548 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + AL +E E+FE+ + + + L + +A +D + ALA A+E RP++D+S Sbjct: 549 HRALAMEGETFEVWRRTVQDLARPLQAVADALAELDATAALAEWAEEVGAVRPVVDDSRV 608 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 F V+ GRHP+VE +K ++ PF NDC L + +L ++TGPNM GKSTFLRQNA Sbjct: 609 FSVEAGRHPVVEAAVK-KAGDPFTPNDCRLDG-DGAGCARLSIVTGPNMAGKSTFLRQNA 666 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 L+V++AQ G +VPA +G+VD+LFSRVG+ D+LA GRSTFM+EM+ETA+IL QAT S Sbjct: 667 LLVVLAQAGCFVPARAMRLGVVDRLFSRVGAGDDLARGRSTFMMEMVETAAILTQATPSS 726 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 F++LDEIGRGTAT DGL+IAWA E LH+ NR R L ATH+HEL L + L N +++ Sbjct: 727 FIVLDEIGRGTATYDGLAIAWACAEALHDVNRSRTLFATHYHELARLEERLDHVCNLSMR 786 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF--EKLYHHNQKD 849 + N ++FLH+ +PG AD SYG+QV KLAG+P V++RA +L EK D Sbjct: 787 AREWNGDLVFLHEAVPGAADRSYGVQVAKLAGVPPAVVARARAVLDRLETEKAAQGRLDD 846 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L+ + + S D + + L+ D +SP AL+ LY +K Sbjct: 847 LPLFA--VMEPPAPPQTSALD----DAVAALDPDALSPREALEALYRLK 889 >gi|197106925|ref|YP_002132302.1| DNA mismatch repair protein MutS [Phenylobacterium zucineum HLK1] gi|196480345|gb|ACG79873.1| DNA mismatch repair protein MutS [Phenylobacterium zucineum HLK1] Length = 894 Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/887 (43%), Positives = 551/887 (62%), Gaps = 22/887 (2%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 ++P+M Q+ E K+ PD+LVF+RMGDFYELFF+DA A+ LGITLT RG+H G IPM Sbjct: 14 GASPVMAQFFEAKARQPDALVFFRMGDFYELFFEDAQKAAAALGITLTSRGQHGGAPIPM 73 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVPVH A Y+ KL++ G ++A+CEQ+E P EAKKRG+KS+VRR++VR+VTPGTLTED Sbjct: 74 AGVPVHAAEAYLAKLVRAGFKVALCEQMEDPAEAKKRGSKSVVRRDLVRVVTPGTLTEDG 133 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 LL +N L AV+ A+A +++STG + L S + + P EI+ ++ Sbjct: 134 LLDARGANRLAAVSVRAGAAAVASVELSTGEVECMAVTLAGLASTLAALGPSEILIPDRL 193 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 S + + G P + S SE+R+ Y + T+D FG S E +A Sbjct: 194 FSDEAVNAALKAAGGFVQPLPQALAEPSASETRLKRLYGVETLDGFGQLSGAEVSALGLI 253 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 ++++ TQ P + P R + ID A R++LEI + SG+RE SLL ID ++T Sbjct: 254 AAHLETTQAGKVPALSAPRRAGEADVMVIDPATRASLEIEKATSGAREGSLLAAIDRTVT 313 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL A R+A PL D I+ RLD++ +F ++ +++ L+ +PD+ R+LSRL + Sbjct: 314 APGARLLAARLARPLLDPAAIDARLDAVAWFCEHRPQRQRLREALQRTPDMARALSRLAL 373 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKN-----DLPEELRGAVEKL--KKLPQ--SLEKT 434 GRG P+D+ +RDG+ +G + LF DLP E+ AV L + P+ + Sbjct: 374 GRGGPRDLGALRDGLAAGEAVTGLFAATKDPLVDLPAEVAEAVAALDVSRRPELAAFRDL 433 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L++ L DLP RDGGF+ +G LD+ R+LRD S+R+IA L+ + AEE+ + LK++ Sbjct: 434 LAAGLGADLPALARDGGFVAEGVRPELDQARALRDDSRRVIAQLEARLAEESGVA-LKVR 492 Query: 495 HNNNLGYFIEVTSSSA-SVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 HN LGYF+E T+ +A ++ L + FIHRQT++N RFTT+EL +L+ RI A Sbjct: 493 HNAVLGYFVECTAKAAEPLMAPPLNAT--FIHRQTLANQVRFTTVELAELDARIAQAAER 550 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL IE+E+FE A + + A++ A +D++ LA A++ RP++D ST F Sbjct: 551 ALAIEVETFEAWREAARAVAAPIQAAAEAAARLDVASGLAEWAEDAGATRPVVDRSTAFE 610 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + RHP+VE ++ ++ + F NDC L + +L ++TGPNM GKSTFLRQNAL+ Sbjct: 611 AEAARHPVVEAAVR-RAGEAFTPNDCRLDG-QGVVAARLSIVTGPNMAGKSTFLRQNALL 668 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 ++AQ G +VPA IG+VD+LFSRVG+ D+LA GRSTFM+EM+ETA+IL QAT +S V Sbjct: 669 AVLAQAGCFVPARRLRIGVVDRLFSRVGAGDDLARGRSTFMLEMVETAAILTQATPRSLV 728 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ILDEIGRGTAT DGL+IAWA +E+LHET+RCR L ATH+HEL L L N +L+ Sbjct: 729 ILDEIGRGTATYDGLAIAWACVEHLHETSRCRALFATHYHELAVLEDRLPYVSNLSLKAK 788 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYH--HNQKDMR 851 + N +IFLH+ PG AD SYG+QV KLAG+P V++RA +L+ E+ + +D+ Sbjct: 789 EWNGELIFLHEAGPGPADRSYGVQVAKLAGVPPAVVARAKQVLERLEREAGAPAHLEDLP 848 Query: 852 LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 L+ + E+K S + E ++ L+ D MSP A+ LY +K Sbjct: 849 LFA-AVAEPEAKYGPSPVE----EALRALDPDGMSPREAMDALYRLK 890 >gi|329847429|ref|ZP_08262457.1| DNA mismatch repair protein MutS [Asticcacaulis biprosthecum C19] gi|328842492|gb|EGF92061.1| DNA mismatch repair protein MutS [Asticcacaulis biprosthecum C19] Length = 902 Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/887 (43%), Positives = 545/887 (61%), Gaps = 21/887 (2%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 + +TP+M QY++ K +PD+L+ +RMGDFYE+FFDDA++AS+ L + LTKRG + GKD Sbjct: 15 DFADATPVMAQYLKTKQEHPDALLLFRMGDFYEIFFDDAVVASQALSLALTKRGVYQGKD 74 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IP+ GVP H + Y+ KLI++G R+A+C+Q+E P EAKKRG+KS+V+R VVR+VTPGTLT Sbjct: 75 IPLAGVPAHALDAYVSKLIRLGFRVAVCDQLEDPAEAKKRGSKSVVKRGVVRVVTPGTLT 134 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 ED LL +N L+A++ AIA +++STG + + L S + + P E + + Sbjct: 135 EDTLLEDRGANRLIALSSRGGVMAIASVELSTGDVECLEIEPETLSSHLSALRPSETLVA 194 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 ++ L L + G V QP+ D S E R+ Y + T+D FGSFS E +A Sbjct: 195 DRLLQDEAVFGLLKQYGGVLQPQPSSLSDPSAGEQRLLYLYGVATLDGFGSFSASEMSAL 254 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 +YI TQ +P + P + + L ID+A R++LEI RT G RE SL+ +D Sbjct: 255 GMLAAYIDVTQAGKRPVLKPPAKVISHNHLAIDAATRNSLEIDRTQQGKREGSLIAALDM 314 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 ++T GGRL A R+A PL IN RLD++ + + N ++ +++S D R+LSR Sbjct: 315 TVTSGGGRLLAARLARPLFQPDAINARLDTVAWLLPRRDARNDLRHLMRSLSDQVRALSR 374 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKND---------LPEELRGAVEKLKKLP--Q 429 L + RG P+D+ VI++G+ G + ND LP E+ + L P Sbjct: 375 LSLNRGGPRDLTVIQNGLTVGETLAATL--NDAAHDGIDPVLPAEIDSVITALIPSPPVA 432 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 +L L L ++ +DGGF+R G A LDE R LRD S++I+ +L+ + A ET I Sbjct: 433 ALRARLERALVEEPALSLKDGGFIRAGYSAELDEMRGLRDDSRQIVLNLEQRLAAETGIA 492 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 ++IK NN LGYFIE++ A L ++ +FIHRQ+++N RF T EL+DL++RI Sbjct: 493 -IRIKFNNVLGYFIELSQKLAEQLVAQ-DTAKQFIHRQSLANQVRFVTTELVDLDSRIQR 550 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 A SAL +E+E FE L + + + + A I +D++ A A A+E + RP+ID++ Sbjct: 551 AAASALGLEMELFETLRDEVRSVAPQIQAAHDAICALDVACANACWAEEFDATRPVIDDT 610 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 + GRHP+V LK Q KPF ND L S +L L+TGPNM GKSTFLRQ Sbjct: 611 QRLEISRGRHPVVCAVLKSQ-GKPFTPNDVALDA-EGAISARLSLVTGPNMAGKSTFLRQ 668 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 NAL+++M+Q G +VPA H+G+VD+LFSRVG+ D+LA GRSTFM+EM+ETA+IL QAT Sbjct: 669 NALLIVMSQAGLFVPAKAMHLGVVDRLFSRVGAGDDLAQGRSTFMMEMVETAAILQQATT 728 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 +SFVILDEIGRGTAT DGL+IAWA E LH+ +CR L ATH+HE+ L K LK N + Sbjct: 729 RSFVILDEIGRGTATYDGLAIAWACAEDLHDRIQCRALFATHYHEMAVLDKRLKALSNLS 788 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 LQ + N +IFLH+V G AD SYG+QV +LAG+P V++RA DIL E+ NQ Sbjct: 789 LQAREHNGELIFLHEVRAGSADRSYGVQVARLAGMPGGVVTRARDILTRLEE---DNQTK 845 Query: 850 MRL-YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 +RL P + +S+ +K LN D++SP AL+ +Y Sbjct: 846 LRLDDLPLFSHTRAPAPVSREHSKAETLLKSLNPDDLSPKEALEVIY 892 >gi|254418788|ref|ZP_05032512.1| DNA mismatch repair protein MutS [Brevundimonas sp. BAL3] gi|196184965|gb|EDX79941.1| DNA mismatch repair protein MutS [Brevundimonas sp. BAL3] Length = 900 Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/904 (41%), Positives = 552/904 (61%), Gaps = 25/904 (2%) Query: 5 FSSPQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASR 64 F SP+ +S ++ +L+ +TP M QY+ K+ PD+++F+RMGDFYELFF DA +A+ Sbjct: 6 FPSPE--HSPEV--AASLEGATPFMAQYLTAKAGQPDAILFFRMGDFYELFFKDAEVAAA 61 Query: 65 CLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKS 124 LGITLTKRGKH G+DIPM GVPVH Y+ +LI++GH++AICEQ+E P EAKKRG K+ Sbjct: 62 ALGITLTKRGKHQGEDIPMAGVPVHAMEGYLARLIRLGHKVAICEQLEDPAEAKKRGGKA 121 Query: 125 LVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR 184 +V R VVR+VTPGTLTED LL +N L AVA + A+A +++S+G + Sbjct: 122 VVHRGVVRVVTPGTLTEDSLLDARGANRLAAVAVRKGRAAVAVVELSSGAVDSVACALED 181 Query: 185 LISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNIT 244 L + + P E++ +++ S + + G V A + + +++R+ Y + Sbjct: 182 LGAALAAFRPSEVLVTDRMYSDPTTRDALDGSGGVVQALASAIAEPQAAQARVERLYGVA 241 Query: 245 TVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILR 304 +D FG+F + E +A +Y++ TQ P + P R L ID A R++LEI R Sbjct: 242 ALDGFGAFEEAEISALGLIAAYLETTQAGKVPALAPPRRLGESGFLAIDPATRTSLEIDR 301 Query: 305 TLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPI 364 T G RE SLL ID ++T G R AERIA PL D IN +LD++ + ++ L + Sbjct: 302 TQRGEREGSLLACIDRTVTSGGARALAERIARPLRDPLAINEQLDAVEWLLERRDLRRNL 361 Query: 365 QKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN-----DLPEELRG 419 ++ LK+S D+ R++ RL +GRG P+D+A +R G+ + LF+ P + Sbjct: 362 REGLKASSDIARAVGRLALGRGGPRDLAAVRVGLTIAEEVAGLFIGQVDPITGQPRRIAL 421 Query: 420 AVEKLKKLPQ--SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIAS 477 A+++L P+ L+ L L D+ RDGGF+R LD R+LRD S+R++A Sbjct: 422 ALDRLSLSPEVSRLKADLIDGLVDEPSHLARDGGFVRPDYRPELDAARTLRDDSRRVVAD 481 Query: 478 LQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSA-SVLKKDLESKDRFIHRQTMSNLTRFT 536 L+ + E+ + K+KHN LGYF+E ++ +A +L+ +S FIHRQT+++ RFT Sbjct: 482 LEARAVAESGVA-FKVKHNAVLGYFLETSAKAAEGLLRAGPDSP--FIHRQTLASQVRFT 538 Query: 537 TLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILA 596 T+EL +L+ +I+ A + AL IE E+FE + ++ L ++ +A +D ALA A Sbjct: 539 TVELSELDAKISQAGHRALAIEAETFETWRREVARLAQPLQAVAEALAELDAHAALAEWA 598 Query: 597 KEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLT 656 +E RP++D++ F V+ GRHP+VE +K + P+ N+ L + + +L ++T Sbjct: 599 QEVGATRPVVDDTLVFSVEAGRHPVVEAAVKA-AGDPYTPNNARLDG-SGSDCARLAIVT 656 Query: 657 GPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVE 716 GPNM GKSTFLRQNAL+VI+AQ G++VPA +G+VD+LFSRVG+ D+LA GRSTFM+E Sbjct: 657 GPNMAGKSTFLRQNALLVILAQAGAFVPARSMRLGVVDRLFSRVGAGDDLARGRSTFMME 716 Query: 717 MIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELT 776 M+ETA+IL QAT +SFV+LDEIGRGTAT DGL+IAWAT E LHETNR R L ATH+HEL Sbjct: 717 MVETAAILTQATPRSFVVLDEIGRGTATYDGLAIAWATAEALHETNRARTLFATHYHELA 776 Query: 777 DLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 L L N ++ + N ++FLH+ PG AD SYG+QV KLAG+P V++RA +L Sbjct: 777 QLETRLDHVCNLSMVAKEWNGDLVFLHEAAPGAADRSYGVQVAKLAGVPGAVVARARSVL 836 Query: 837 KTFEKLYHHNQKDMRL-YYPEIQTKESKNNLSKNDKLFVE-KIKCLNLDEMSPLTALKTL 894 E+L RL P E L+ + VE + ++ D ++P AL+ L Sbjct: 837 ---ERLEGEKAATARLDDLPLFALAEPAPVLAPSP---VETALGAVDPDALTPREALEAL 890 Query: 895 YAVK 898 Y +K Sbjct: 891 YRLK 894 >gi|241762458|ref|ZP_04760535.1| DNA mismatch repair protein MutS [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241372960|gb|EER62627.1| DNA mismatch repair protein MutS [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 869 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/878 (42%), Positives = 540/878 (61%), Gaps = 25/878 (2%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY E+K+ D L+FYRMGDF+ELFFDDA AS L I LT RG H+ + IPMCGVP Sbjct: 1 MMEQYYELKAQAQDCLLFYRMGDFFELFFDDAKKASAILDIALTSRGTHIEESIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRG-NKSLVRRNVVRLVTPGTLTEDQLLS 146 +H A Y+ +LIK G R+AI +Q+E+P EAKKRG +K+LV+R ++R+VT GTLTE+ LL Sbjct: 61 IHAAESYLARLIKAGCRVAIADQVETPAEAKKRGGSKALVKRAIIRVVTAGTLTEEALLD 120 Query: 147 PTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSH 206 +N+L+AVAR +++ +A DISTG F+ T + RL S++ R+ E+I E + Sbjct: 121 SRAANWLVAVARAGSDFGLAAADISTGRFETITLSEGRLDSELARLSAAEVIAPESLVQQ 180 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISY 266 A YK+ AVA N F+ E+R+ + I+T+D FG FS+ E A +++ Sbjct: 181 AAYKNRIPQ----AVALSNECFNSPHGEARLKSLFKISTLDGFGIFSRAELAAIDGLLAW 236 Query: 267 IKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAG 326 + + P + P R + ID+A RS+LE+ + G R+ SL+ +ID+++TGAG Sbjct: 237 LDRAGQGKLPFLQQPVRRAYADHMLIDAATRSSLELTASTEGRRDGSLVSSIDHTVTGAG 296 Query: 327 GRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRG 386 RL + +PL D I+ RLD + FF + +L ++ +LK SPD+ R L RL GRG Sbjct: 297 ARLLTADLGAPLMDIDVIHKRLDLVEFFFYDTLLREDVRDLLKGSPDLARVLGRLVAGRG 356 Query: 387 EPKDIAVIRDGIRSGI----NILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 P+D++++RDG++ + +L K L E++ A L LE+ L + Sbjct: 357 TPRDLSLLRDGLKQAFILYEKLFSLEPKPALLEQILPAFRGHGSLVDLLERALI----EQ 412 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P GGF+ G D +LDE RS+ +S+R IA+L+ Y E+T I LKI+HNN LGY Sbjct: 413 PPIDATQGGFIAKGYDHALDELRSMGGESRRAIAALEATYREKTGINTLKIRHNNVLGYH 472 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IEV S A L +++ F HRQT++ + RF EL + R T A A+ IE + Sbjct: 473 IEVPSRHADAL---MQANSGFTHRQTLAGVVRFNASELHEQAIRATQAGVQAIAIESKHL 529 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 L + +E+ + + + +A +D+S A A ++N+ RP +D+S F V GRHP+V Sbjct: 530 ACLIESTLEKRDHIAACADALARLDVSAGFADCAVQKNWTRPTVDDSCCFDVIQGRHPVV 589 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 E L + S + F+AN+ +L N +LWL+TGPNMGGKSTFLRQNAL+ ++AQ GS+ Sbjct: 590 ENALVK-SGERFVANNTNLDPKN-----RLWLVTGPNMGGKSTFLRQNALLAVLAQTGSF 643 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA A IG+VD+LFSRVG++DNLA GRSTFMVEM+ETA+IL+QATN+SFVILDE+GRGT Sbjct: 644 VPAEKARIGLVDRLFSRVGASDNLARGRSTFMVEMVETAAILSQATNRSFVILDEVGRGT 703 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFL 802 +T DGL+IAWA +E +H+ N CR L ATH+HELT L+ L ++ + ++ L Sbjct: 704 STYDGLAIAWAVVEAVHDINACRCLFATHYHELTQLTSRLPALSLHHVRAKEWQGDLVLL 763 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY-HHNQKDMRLY-YPEIQTK 860 H++ G AD SYGI+V +LAGLP V+ RA ++L E +N L P + Sbjct: 764 HEMAEGAADRSYGIEVARLAGLPPVVLKRASEVLAQLENSSGKNNDSSANLSDLPLFGVQ 823 Query: 861 ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L +ND L+ + + L+ D ++P AL +Y +K Sbjct: 824 AFQTVLPQNDPLY-DAVSELDADALTPRQALDVIYRLK 860 >gi|114798005|ref|YP_759027.1| DNA mismatch repair protein MutS [Hyphomonas neptunium ATCC 15444] gi|122942786|sp|Q0C5G6|MUTS_HYPNA RecName: Full=DNA mismatch repair protein mutS gi|114738179|gb|ABI76304.1| DNA mismatch repair protein MutS [Hyphomonas neptunium ATCC 15444] Length = 890 Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/881 (42%), Positives = 540/881 (61%), Gaps = 18/881 (2%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP M QY+ IK+ +P +L+F+RMGDFYELFF DA+ A+ L ITLT RG+H GK IPM G Sbjct: 14 TPFMAQYLSIKAEHPGALLFFRMGDFYELFFQDAVEAASILDITLTSRGEHDGKPIPMAG 73 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ +LIK G R+A+CEQ+E+P EAKKRG+KS+V+R VVR+VTPGTLTED LL Sbjct: 74 VPYHAAEGYLARLIKGGCRVAVCEQMETPAEAKKRGSKSIVQRGVVRIVTPGTLTEDALL 133 Query: 146 SPTDSNYLMAVA-RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 L A+A E A+A D+STG F ++ RL ++ E++ S + Sbjct: 134 PARQGQALAAIAFSGAGEAALAVCDVSTGAFDLTAIPAARLGEALLAWPLSELVISADD- 192 Query: 205 SHAEYKSLFETLGNVAVA---QPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 A+ + E G ++ +P E+ + + + + +D+ G FS+VE AA Sbjct: 193 --ADRPLILEARGFLSAPITERPGRAATAKSGEALLKEVFGLAALDSLGDFSRVEFAAAG 250 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 + Y+K TQ + P R D L ID A R++LEI R++SG R+ +LL ID + Sbjct: 251 LLLDYVKLTQAGAPIRLRAPRRPDTGGILLIDPATRASLEIDRSISGGRDGTLLAVIDRT 310 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +T G RL A R+A P ++I +R D+++ + + + ++ LKS+PD+ R++ RL Sbjct: 311 VTAPGARLLAARLARPSRSVSEITSRYDAVSHLLGDAGQLEDVRVRLKSAPDLERAVMRL 370 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVE--KLKKLP--QSLEKTLSS 437 +GRG P+D+A + + SG + L LP L E L P ++ + L+ Sbjct: 371 NLGRGGPRDMAALSKAVLSGAEAAGV-LGRGLPPRLAEVAETLGLSGAPSVRAFAEDLAR 429 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 L++ P RDGGF+ G D +LDE R+LRD S+R+IA LQ KYA++T I LK+K NN Sbjct: 430 ALTEAPPMLARDGGFIAQGWDVALDEVRALRDGSRRVIAELQAKYADQTGINALKVKFNN 489 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 LGYFIEV ++ A + + S D FIHRQTM+ RF+T EL DL RI A + A Sbjct: 490 VLGYFIEVPAAKADPMLRAPLSAD-FIHRQTMAGAVRFSTHELADLAGRIGRAEDEAKAR 548 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E+ FE + E + L + +A +D++ + A+ A E RP +D F K Sbjct: 549 EIAIFEAFCAKVEELTGPLAVIAAALAELDVAASHAVWAAETGAVRPALDPRPVFEAKGL 608 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE L+++ K F AND L ++ + + L+TGPNM GKST+LRQ+AL VI+A Sbjct: 609 RHPVVEAALRKEG-KGFTANDLHLDAEGNEGA-RFLLVTGPNMAGKSTYLRQSALAVILA 666 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q G++VPA+ +G+ D++FSRVG++D+LA GRSTFMVEM+ETA+ILNQAT +SFVILDE Sbjct: 667 QAGAFVPAASLRLGLSDRVFSRVGASDDLARGRSTFMVEMVETAAILNQATPESFVILDE 726 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 +GRGTAT DGL+IAWA E+LH+TNRCR + ATH+HELTDL+ + NA+L+ + + Sbjct: 727 VGRGTATWDGLAIAWAAAEHLHDTNRCRAIFATHYHELTDLAARMPAASNASLKAREWKQ 786 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 +IFLH+V PG AD SYG+QV KLAGLP ++RA ILK E ++ ++ L+ + Sbjct: 787 DLIFLHEVQPGPADRSYGVQVAKLAGLPRAAVARAGQILKKLEAGPSASE-NLPLF--AM 843 Query: 858 QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ S +E + + D ++P AL +Y +K Sbjct: 844 VAEDPAPEFSPESSAVIEALAAADPDSLTPREALDLVYRLK 884 >gi|260753470|ref|YP_003226363.1| DNA mismatch repair protein MutS [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552833|gb|ACV75779.1| DNA mismatch repair protein MutS [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 869 Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/878 (42%), Positives = 540/878 (61%), Gaps = 25/878 (2%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY E+K+ D L+FYRMGDF+ELFFDDA AS L I LT RG H+ + IPMCGVP Sbjct: 1 MMEQYYELKAQAQDCLLFYRMGDFFELFFDDAKKASAILDIALTSRGTHIEESIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRG-NKSLVRRNVVRLVTPGTLTEDQLLS 146 +H A Y+ +LIK G R+AI +Q+E+P EAKKRG +K+LV+R ++R+VT GTLTE+ LL Sbjct: 61 IHAAESYLARLIKAGCRVAIADQVETPAEAKKRGGSKALVKRAIIRVVTAGTLTEEALLD 120 Query: 147 PTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSH 206 +N+L+AVAR +++ +A DISTG F+ + RL S++ R+ E+I E + Sbjct: 121 SRAANWLVAVARAGSDFGLAAADISTGRFETIALSEGRLDSELARLSAAEVIAPESLVQQ 180 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISY 266 A YK+ AVA N F+ E+R+ + I+T+D FG FS+ E A +++ Sbjct: 181 AAYKNRIPQ----AVALSNKCFNSPHGEARLKSLFKISTLDGFGIFSRAELAAIDGLLAW 236 Query: 267 IKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAG 326 + + P + P R + ID+A RS+LE+ + G R+ SL+ +ID+++TGAG Sbjct: 237 LDRAGQGKLPFLQQPVRRAYADHMLIDAATRSSLELTASTEGLRDGSLVSSIDHTVTGAG 296 Query: 327 GRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRG 386 RL + +PL D I+ RLD + FF + +L ++ +LK SPD+ R L RL GRG Sbjct: 297 ARLLTADLGAPLMDIDVIHKRLDLVEFFFYDTLLREDVRDLLKGSPDLARVLGRLVAGRG 356 Query: 387 EPKDIAVIRDGIRSGI----NILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 P+D++++RDG++ + +L K L E++ A L LE+ L + Sbjct: 357 TPRDLSLLRDGLKQAFILYEKLFSLEPKPALLEQILPAFRGHGSLVDLLERALI----EQ 412 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P GGF+ G D +LDE RS+ +S+R IA+L+ Y E+T I LKI+HNN LGY Sbjct: 413 PPIDATQGGFIAKGYDHALDELRSMGGESRRAIAALEATYREKTGINTLKIRHNNVLGYH 472 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IEV S A L +++ F HRQT++ + RF EL + R T A A+ IE + Sbjct: 473 IEVPSRHADAL---MQANSGFTHRQTLAGVVRFNASELHEQAIRATQAGVQAIAIESKHL 529 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 L + +E+ +++ + +A +D+S A A ++N+ RP +D+S F V GRHP+V Sbjct: 530 ACLIESTLEKRDNIAACADALARLDVSAGFADCAVQKNWTRPTVDDSCCFDVIQGRHPVV 589 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 E L + S + F+AN+ +L N +LWL+TGPNMGGKSTFLRQNAL+ ++AQ GS+ Sbjct: 590 ENALVK-SGERFVANNTNLDPKN-----RLWLVTGPNMGGKSTFLRQNALLAVLAQTGSF 643 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA A IG+VD+LFSRVG++DNLA GRSTFMVEM+ETA+IL+QATN+SFVILDE+GRGT Sbjct: 644 VPAEKARIGLVDRLFSRVGASDNLARGRSTFMVEMVETAAILSQATNRSFVILDEVGRGT 703 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFL 802 +T DGL+IAWA +E +H+ N CR L ATH+HELT L+ L ++ + ++ L Sbjct: 704 STYDGLAIAWAVVEAVHDINACRCLFATHYHELTQLTSRLPALSLHHVRAKEWQGDLVLL 763 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY-HHNQKDMRLY-YPEIQTK 860 H++ G AD SYGI+V +LAGLP V+ RA ++L E +N L P + Sbjct: 764 HEMAEGAADRSYGIEVARLAGLPPVVLKRASEVLAQLENSSGKNNDSSANLSDLPLFGVQ 823 Query: 861 ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L +ND L+ + + L+ D ++P AL +Y +K Sbjct: 824 AFQTVLPQNDPLY-DAVSELDADALTPRQALDVIYRLK 860 >gi|295687463|ref|YP_003591156.1| DNA mismatch repair protein MutS [Caulobacter segnis ATCC 21756] gi|295429366|gb|ADG08538.1| DNA mismatch repair protein MutS [Caulobacter segnis ATCC 21756] Length = 900 Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/888 (42%), Positives = 545/888 (61%), Gaps = 21/888 (2%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 +TP+M+Q+ E+K+ PD+L+F+RMGDFYELFFDDA A+ LGI+ T RG H G+ IPM Sbjct: 16 GATPVMQQFFEMKARQPDALIFFRMGDFYELFFDDAYKAAAALGISQTFRGTHNGQPIPM 75 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H A Y+ KLI++G ++A+CEQ+E P EAKKRG+KS+VRR++VR+VTPGTLTED Sbjct: 76 AGVPQHAAEAYLSKLIRLGFKVAVCEQMEDPAEAKKRGSKSVVRRDIVRVVTPGTLTEDG 135 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 LL +N L AVA + A+A +++STG ++ + + + + P E + +++ Sbjct: 136 LLDARGANRLAAVAIRAGQAAVASVELSTGEVEVFALTKEAVAPILAALAPSETLVADRL 195 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 LS + G + P+ + SE+R+ Y + T+D FG S E A Sbjct: 196 LSDDALSQTLKICGGLVQPMPSALSEPQASEARVKRLYGVETLDGFGGLSPAEIGALGLI 255 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 ++++ TQ P + P R + ID A R +LEI RT +G R SLL ID ++T Sbjct: 256 AAHLEMTQAGKLPALRAPRRAADADVMAIDPATRGSLEIDRTQTGDRNGSLLAVIDRTVT 315 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G R+ A R+A PL D I+ RLD++ +F+++ L ++++LK + D+ R LSRL + Sbjct: 316 AGGARMLASRLARPLLDVAAIDQRLDAVEWFVEHRQLRQRLREVLKGAGDMARGLSRLAL 375 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLK-----NDLPEELRGAVEKL-KKLPQSLEK---T 434 GRG P+D+ IRD ++ G + + + P EL A + L L + L + T Sbjct: 376 GRGGPRDLGCIRDTLKVGERLAGMAGGSPDPLSPPPFELEHAFKALTPALHEGLSQFLNT 435 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L L DLP RDGGF+ G LD+ R+LRD S+++I +++ + E+ + LKI+ Sbjct: 436 LEQGLGPDLPALARDGGFVAAGVRPELDQARTLRDDSRKVIVAMEAQLTAESGVP-LKIR 494 Query: 495 HNNNLGYFIEVTSSSASVL-KKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 HN LGYF+E T+ A L + L + FIHRQT++N RFTT+EL DL+ RI A Sbjct: 495 HNGVLGYFVEATAGKADPLFQPPLNAT--FIHRQTLANQVRFTTVELADLDARIAQAAER 552 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E+ +FE ++++ A++ +A ID++ ALA A++ RPI+D S F Sbjct: 553 ALAMEVAAFEDWREQARLLADAIQIAAEALARIDVASALAEWAEDAGAVRPIVDASYAFD 612 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 K RHP+VE +K ++ +P+ NDC L + + +L ++TGPNM GKSTFLRQNAL+ Sbjct: 613 AKGARHPVVEAAVK-RAGEPYTPNDCCLDA-SGEGGPRLSIVTGPNMAGKSTFLRQNALL 670 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 I+AQ G YVPA+ +G+VD+LFSRVG+ D+LA GRSTFM+EM+ETA+IL QA +S V Sbjct: 671 AILAQSGCYVPAASFRLGVVDRLFSRVGAGDDLARGRSTFMMEMVETAAILTQAGPRSLV 730 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ILDEIGRGTAT DGL+IAWA E LH+ NRCR L ATH+HEL L + + N +L+ Sbjct: 731 ILDEIGRGTATYDGLAIAWACAEALHDVNRCRALFATHYHELATLEERMSFVSNLSLRAK 790 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK--DMR 851 + N ++FLH+ + G AD SYG+QV KLAG+P V++RA ++L E K D+ Sbjct: 791 EWNGDLVFLHEAVSGPADRSYGVQVAKLAGVPMPVVARAREVLDRLETKDQSPAKLDDLP 850 Query: 852 LYYPEIQTKESKNNLSKNDKLFVE-KIKCLNLDEMSPLTALKTLYAVK 898 L+ ++ +K VE ++ L++D MSP AL+ LY +K Sbjct: 851 LF---AMSQAVVQAPAKAAPSAVETTLEDLDVDGMSPREALEALYRLK 895 >gi|48428294|sp|P61673|MUTS_WOLPM RecName: Full=DNA mismatch repair protein mutS Length = 849 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/847 (42%), Positives = 540/847 (63%), Gaps = 54/847 (6%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TP+M QY+ +K+ D L+FYR+GDFYELFFDDA+ A++ L I LTKRG G++IPMC Sbjct: 26 NTPVMEQYLNLKAQYKDHLLFYRLGDFYELFFDDAIKAAKLLNIVLTKRGNSCGQEIPMC 85 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H++ Y+ KLI +G ++AIC+Q+E+ EAKKRG KS+V+R+VVR+VTPGT+ ED L Sbjct: 86 GVPAHSSESYLHKLIDLGFKVAICDQLETADEAKKRGYKSIVKRDVVRVVTPGTIIEDSL 145 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 L +NYL ++ E+AI+W+++STG F + ++ L SD++RI PRE++ SEK Sbjct: 146 LEDKSNNYLASIVEQNDEYAISWLELSTGKFFHTLTSLKALDSDLLRISPRELLISEKFT 205 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 + +S+ + FF++S S + ++Y I + + G+FS+VE A A + Sbjct: 206 EDEKIRSILKNYKISITQHAQSFFEYSKSHRTLCEFYKIRELGSIGNFSKVEIMACGALL 265 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 Y++ TQ + P + +P+ Q+ + ID++AR NLE+ T G ++ SL+ ID+++T Sbjct: 266 EYVRVTQRGSIPRLEFPKTYKQQNFMLIDTSARRNLELFSTQFGEKKGSLISVIDHTVTA 325 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 +GGRL + +ASPL S IN RL + FF+ N I++IL + PD+ RSLSRL +G Sbjct: 326 SGGRLLKQMLASPLACSKAINLRLSTAQFFVNNHDSRRKIREILSNIPDIERSLSRLILG 385 Query: 385 RGEPKDIAVIRDGIRSGINILNLFLK------NDLPEEL----------RGAV------E 422 RG PKD+ +++ G+ + + K LP++ R + Sbjct: 386 RGSPKDMNLLKIGLGKTLELSEFLCKIESGENGSLPQQYVIQTEIQPASRAGITVKSDES 445 Query: 423 KLKKLPQSL-------EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRII 475 +L + +SL E S++L ++L + K +GGF+ ++ L E + + S +++ Sbjct: 446 ELSTIHKSLGNHKDLFELLNSAILDNNLSSVK-EGGFIHSKYNSELSELSYILNNSNKLV 504 Query: 476 ASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRF 535 L+ Y + T I LKI HNN LGY++EV+++ + D FIHRQ+++N R+ Sbjct: 505 TKLRESYRDLTGIAALKILHNNILGYYVEVSANHKI-------TSDIFIHRQSLANSMRY 557 Query: 536 TTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAIL 595 TT EL +LEN+I A ++A+ +E++ F L + + ++SE + A+ +A +DI A A L Sbjct: 558 TTNELKELENKILTARDAAIGLEMKIFSELCSEVAKESEKIALAANALAKLDIRTAFAEL 617 Query: 596 AKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLL 655 A + NY +PIID+S F + GRHP+VE K FIAN +L+ + L+ Sbjct: 618 AVQNNYVKPIIDDSKEFNICSGRHPVVEVNDK------FIANSINLA--------GIHLI 663 Query: 656 TGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMV 715 TGPNM GKSTFLRQNALI I+A MGS+VPA AHIG++DK+FSRVG+ DN+ +G STFMV Sbjct: 664 TGPNMAGKSTFLRQNALIAILAHMGSFVPAESAHIGVIDKIFSRVGATDNITAGYSTFMV 723 Query: 716 EMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHEL 775 EMIETA+I+NQAT++S VILDEIGRGT DGLSIA A IE++H N+CR + ATH+HEL Sbjct: 724 EMIETATIVNQATDRSLVILDEIGRGTGVYDGLSIAQAVIEHIHNVNKCRAIFATHYHEL 783 Query: 776 TDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI 835 T +SK LK +++ + N +IFLH+VI GIAD SYGI V KLAG P++V++RA ++ Sbjct: 784 TKVSKYLKNVKCFCVKIREWNGEVIFLHEVIEGIADESYGIHVAKLAGFPDSVLNRASEV 843 Query: 836 LKTFEKL 842 FE+L Sbjct: 844 ---FEEL 847 >gi|225677035|ref|ZP_03788045.1| DNA mismatch repair protein [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590924|gb|EEH12141.1| DNA mismatch repair protein [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 849 Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/847 (42%), Positives = 539/847 (63%), Gaps = 54/847 (6%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TP+M QY+ +K+ D L+FYR+GDFYELFFDDA+ A++ L I LTKRG G++IPMC Sbjct: 26 NTPVMEQYLNLKAQYKDHLLFYRLGDFYELFFDDAIKAAKLLNIVLTKRGNSCGQEIPMC 85 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H++ Y+ KLI +G ++AIC+Q+E+ EAKKRG KS+V+R+VVR+VTPGT+ ED L Sbjct: 86 GVPAHSSESYLHKLIDLGFKVAICDQLETADEAKKRGYKSIVKRDVVRVVTPGTIIEDSL 145 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 L +NYL ++ E+AI+W+++STG F + ++ L SD++RI PRE++ SEK Sbjct: 146 LEDKSNNYLASIVEQNDEYAISWLELSTGKFFHTLTSLKALDSDLLRISPRELLISEKFT 205 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 + +S+ + FF++S S + ++Y I + + G+FS+VE A A + Sbjct: 206 EDEKIRSVLKNYKISITQHAQSFFEYSKSHRTLCEFYKIRELGSIGNFSKVEIMACGALL 265 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 Y++ TQ + P + +P+ Q+ + ID++AR NLE T G ++ SL+ ID+++T Sbjct: 266 EYVRVTQRGSIPRLEFPKTYKQQNFMLIDASARRNLESFSTQFGEKKGSLISVIDHTVTA 325 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 +GGRL + +ASPL S IN RL + FF+ N I++IL + PD+ RSLSRL +G Sbjct: 326 SGGRLLKQMLASPLACSKAINLRLSTAQFFVNNHDSRKKIREILSNIPDIERSLSRLILG 385 Query: 385 RGEPKDIAVIRDGIRSGINILNLFLK------NDLPEEL----------RGAV------E 422 RG PKD+ +++ G+ + + K LP++ R + Sbjct: 386 RGSPKDMNLLKIGLGKTLELSEFLCKIESGENGSLPQQYVIQTEIQPASRAGITVKSDES 445 Query: 423 KLKKLPQSL-------EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRII 475 +L + +SL E S++L ++L + K +GGF+ ++ L E + + S ++I Sbjct: 446 ELSTIHKSLGNHKDLFELLNSAILDNNLSSVK-EGGFIHSKCNSELSELSYILNNSNKLI 504 Query: 476 ASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRF 535 L+ Y + T I LKI HNN LGY++EV+++ + D FIHRQ+++N R+ Sbjct: 505 TKLRESYRDLTGIAALKILHNNILGYYVEVSANHKI-------TSDIFIHRQSLANSMRY 557 Query: 536 TTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAIL 595 TT EL +LEN+I A ++A+ +E++ F L + + ++SE + A+ +A +DI A A L Sbjct: 558 TTNELKELENKILTARDAAIGLEMKIFSELCSEVAKESEKIALAANALAKLDIRTAFAEL 617 Query: 596 AKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLL 655 A + NY +PIID+S F + GRHP+VE K FIAN +L+ + L+ Sbjct: 618 AVQNNYVKPIIDDSKEFNICSGRHPVVEVNDK------FIANSINLA--------GIHLI 663 Query: 656 TGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMV 715 TGPNM GKSTFLRQNALI I+A MGS+VPA AHIG++DK+FSRVG+ DN+ +G STFMV Sbjct: 664 TGPNMAGKSTFLRQNALIAILAHMGSFVPAESAHIGVIDKIFSRVGATDNITAGYSTFMV 723 Query: 716 EMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHEL 775 EMIETA+I+NQAT++S VILDEIGRGT DGLSIA A IE++H N+CR + ATH+HEL Sbjct: 724 EMIETATIVNQATDRSLVILDEIGRGTGVYDGLSIAQAVIEHIHNVNKCRAIFATHYHEL 783 Query: 776 TDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI 835 T +SK LK +++ + N +IFLH+VI GIAD SYGI V KLAG P++V++RA ++ Sbjct: 784 TKVSKYLKNVKCFCVKIREWNGEVIFLHEVIEGIADESYGIHVAKLAGFPDSVLNRASEV 843 Query: 836 LKTFEKL 842 FE+L Sbjct: 844 ---FEEL 847 >gi|304320148|ref|YP_003853791.1| DNA mismatch repair protein [Parvularcula bermudensis HTCC2503] gi|303299051|gb|ADM08650.1| DNA mismatch repair protein [Parvularcula bermudensis HTCC2503] Length = 873 Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/886 (43%), Positives = 535/886 (60%), Gaps = 31/886 (3%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY I+ ++L+FYRMGDFYELFFDDA+ AS L ITLT RGK G+ IPMCG Sbjct: 2 TPMMAQYHAIREDAGEALLFYRMGDFYELFFDDAIKASAALDITLTHRGKQEGEAIPMCG 61 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH A Y+ +LI+ G R+AICEQ E P EAKKRG+K++V R +VR+VTPGTLTE+ LL Sbjct: 62 VPVHAAETYLARLIRKGFRVAICEQTEDPKEAKKRGSKAVVAREIVRIVTPGTLTEEALL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 SP +N L+AVA TE+ +A +D+STG + + L + + P E + S+++ Sbjct: 122 SPRAANRLVAVALDDTEFGLATVDLSTGEIGLEAGKGESLGDRLSALSPAEWLLSDRQAL 181 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAIS 265 L P F + + + ++D FG +++E A A ++ Sbjct: 182 PPLPVDL-----PAPTRHPARDFRSVVGREWAQTIFGVQSLDAFGELTELEAGALGALLA 236 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y+ TQ + P + P+R + L ID+A R +LE+ RT G RE SLL TID ++TG Sbjct: 237 YLDLTQKGHLPPLSPPKRAISSAYLSIDAATRRSLEVTRTADGQREGSLLATIDRTLTGP 296 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 G R + +PLTD I RLD++ F+ + ++ +LK PD+ R+L+RL +GR Sbjct: 297 GARRLEALLTAPLTDPRAIGDRLDAVAAFVDDRQRREGMRDLLKGVPDLSRALTRLGVGR 356 Query: 386 GEPKDIAVIRDGIRSGINILNLF----LKNDLPEELRGAVEKLKK---LPQSLEKTLSSM 438 G P+D+ I G+ S I+ + + LP LR + LK+ + L + L++ Sbjct: 357 GGPRDLKAIATGLISARAIMAVMEDAPSRFALPPLLRDLLSTLKERAAVWAPLAEPLAAA 416 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 L +D P RDGG DG DA LD R L S+++IA + +Y E T +++LKIKH+ Sbjct: 417 LVEDPPHLVRDGGIFVDGIDAELDAARRLTKDSRQVIAEWEGRYREVTGVRSLKIKHSRI 476 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 LGYFIEVT+++A L+ LE D F HRQT++N RF+T L L+ +I A + L+ E Sbjct: 477 LGYFIEVTAANADHLRS-LEVDDPFRHRQTLANAVRFSTETLDHLDGQIAAAGETTLMRE 535 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 FE I+ ++ + + +A ID+ ALA LA ++ Y RP ID+ F V+ GR Sbjct: 536 TALFEERRAEILAAHGAIQSTASALAEIDVFTALADLADDRRYVRPQIDDGLGFQVEAGR 595 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE L +S F+ N C LS + + L ++TGPNM GKSTFLRQNALI I+AQ Sbjct: 596 HPVVEAALPAGASG-FVPNPCLLS---EGEAPSLAVVTGPNMAGKSTFLRQNALIAILAQ 651 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 GS+VPA+ IGIVD+LFSRVG++DNLA GRSTFMVEM+ETA+ILNQAT +S VILDE+ Sbjct: 652 CGSFVPAARVKIGIVDRLFSRVGASDNLAQGRSTFMVEMLETAAILNQATVRSLVILDEV 711 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGTAT DG++IAWAT+E LH+ CR L ATH+HELT LS L R N ++ V + Sbjct: 712 GRGTATYDGMAIAWATLEELHDGIGCRALFATHYHELTALSDKLGRMRNLSMAVKEWKGE 771 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 ++FLH+V G AD SYG+ V KLAGLP V+ RA +L E + R P I+ Sbjct: 772 VVFLHEVREGAADRSYGLAVAKLAGLPRRVVRRAESLLAQLE--------EGRGPIPTIE 823 Query: 859 T----KESKNNLSKNDKL--FVEKIKCLNLDEMSPLTALKTLYAVK 898 +S N + ++ F + + L+ D ++P AL+ LY +K Sbjct: 824 DLPLFAQSDTNEREGSEIAEFQDTLSQLDPDSLTPKQALERLYELK 869 >gi|225630016|ref|YP_002726807.1| DNA mismatch repair protein MutS [Wolbachia sp. wRi] gi|254766648|sp|C0R5H4|MUTS_WOLWR RecName: Full=DNA mismatch repair protein mutS gi|225591997|gb|ACN95016.1| DNA mismatch repair protein MutS [Wolbachia sp. wRi] Length = 854 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/853 (42%), Positives = 541/853 (63%), Gaps = 61/853 (7%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TP+M QY+ +K+ D L+FYR+GDFYELFFDDA+ A++ L I LTKRG G+DIPMC Sbjct: 26 NTPVMEQYLNLKAQYKDHLLFYRLGDFYELFFDDAIKAAKLLNIVLTKRGNSCGQDIPMC 85 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H++ Y+ KLI +G ++AIC+Q+E+ EAKKRG KS+V+R+VVR+VTPGT+ ED L Sbjct: 86 GVPAHSSESYLHKLIDLGFKVAICDQLETADEAKKRGYKSIVKRDVVRVVTPGTIIEDSL 145 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 L +NYL ++ E+AI+W+++STG F + ++ L SD++RI PRE++ SEK Sbjct: 146 LEDKSNNYLASIVEQNDEYAISWLELSTGKFFHTLTSLKALDSDLLRISPRELLISEKFT 205 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 + +S+ + FF++S S + ++Y I + + G+FS+VE A A + Sbjct: 206 EDEKIRSVLKNYKISITQHAQSFFEYSKSHRTLCEFYKIRELGSIGNFSKVEIMACGALL 265 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 Y++ TQ + P + +P+ Q+ + ID++AR NLE+ T G ++ SL+ ID+++T Sbjct: 266 EYVRVTQRGSIPRLEFPKTYKQQNFMLIDASARRNLELFSTQFGEKKGSLISVIDHTVTA 325 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 +GGRL + +ASPL S IN RL + FF+ N I++IL + PD+ RSLSRL +G Sbjct: 326 SGGRLLKQMLASPLACSKAINLRLSTAQFFVNNHEPRRKIREILSNIPDIERSLSRLILG 385 Query: 385 RGEPKDIAVIRDGIRSGINILNLFL----------KNDLPEELRGAVEKLKKLPQSLEKT 434 RG PKD+ +++ G+ + L+ FL K+++ ++ +K P S + Sbjct: 386 RGSPKDMNLLKIGLGKTLE-LSEFLSTLHNYCLSEKSEINSQMSFQCLTKEKEPVSTTQV 444 Query: 435 LSS-------------------------MLSDDLPTFKRDGGFLRDGADASLDETRSLRD 469 +SS +L ++L + K +GGF+ ++ L E + + Sbjct: 445 ISSDESELSTIHKSLGNHKDLFELLNSAILDNNLSSVK-EGGFIHSKYNSELSELSYILN 503 Query: 470 QSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTM 529 S +++ L+ Y + T I LKI HNN LGY++EV+++ + D FIHRQ++ Sbjct: 504 NSNKLVTKLRESYRDLTGIAALKILHNNILGYYVEVSANHKI-------TSDIFIHRQSL 556 Query: 530 SNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDIS 589 +N R+TT EL +LEN+I A ++A+ +E++ F L + + ++SE + A+ +A +DI Sbjct: 557 ANSMRYTTNELKELENKILTARDAAIGLEMKIFSELCSEVAKESEKIALAANALAKLDIR 616 Query: 590 IALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNS 649 A A LA + NY +PIID+S F + GRHP+VE K FIAN +L+ Sbjct: 617 TAFAELAVQNNYVKPIIDDSKEFNICSGRHPVVEVNNK------FIANSINLA------- 663 Query: 650 GKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASG 709 + L+TGPNM GKSTFLRQNALI ++A MGS+VPA AHIG++DK+FSRVG+ DN+ +G Sbjct: 664 -GIHLITGPNMAGKSTFLRQNALIAVLAHMGSFVPAESAHIGVIDKIFSRVGATDNITAG 722 Query: 710 RSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLA 769 STFMVEMIETA+I+NQAT++S VILDEIGRGT DGLSIA A IE++H N+CR + A Sbjct: 723 YSTFMVEMIETATIVNQATDRSLVILDEIGRGTGVYDGLSIAQAVIEHIHNVNKCRAIFA 782 Query: 770 THFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVI 829 TH+HELT +SK LK +++ + N +IFLH+VI GIAD SYGI V KLAG P++V+ Sbjct: 783 THYHELTKVSKYLKNVKCFCVKIREWNGEVIFLHEVIEGIADESYGIHVAKLAGFPDSVL 842 Query: 830 SRAYDILKTFEKL 842 +RA ++ FE+L Sbjct: 843 NRASEV---FEEL 852 >gi|283856576|ref|YP_163642.2| DNA mismatch repair protein MutS [Zymomonas mobilis subsp. mobilis ZM4] gi|292495029|sp|Q5NL79|MUTS_ZYMMO RecName: Full=DNA mismatch repair protein mutS gi|283775585|gb|AAV90531.2| DNA mismatch repair protein MutS [Zymomonas mobilis subsp. mobilis ZM4] Length = 869 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/875 (42%), Positives = 534/875 (61%), Gaps = 19/875 (2%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY E+K+ D L+FYRMGDF+ELFFDDA AS L I LT RG H+ + IPMCGVP Sbjct: 1 MMEQYYELKAQAQDCLLFYRMGDFFELFFDDAKKASAILDIALTSRGTHIEESIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRG-NKSLVRRNVVRLVTPGTLTEDQLLS 146 +H A Y+ +LIK G R+AI +Q+E+P EAKKRG +K+LV+R ++R+VT GTLTE+ LL Sbjct: 61 IHAAESYLARLIKAGCRVAIADQVETPAEAKKRGGSKALVKRAIIRVVTAGTLTEEALLD 120 Query: 147 PTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSH 206 +N+L+AVAR +++ +A DISTG F+ + RL S++ R+ E+I E + Sbjct: 121 SRAANWLVAVARAGSDFGLAAADISTGRFETIALSEGRLDSELARLSAAEVIAPESLVQQ 180 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISY 266 YK+ AV N F+ E+R+ + I+T+D FG FS+ E A +++ Sbjct: 181 EAYKNRIPQ----AVELSNECFNSPHGEARLKSIFKISTLDGFGIFSRAELAAIDGLLAW 236 Query: 267 IKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAG 326 + + P + P R + ID+A RS+LE+ + G R+ SL+ +ID+++TGAG Sbjct: 237 LDRAGQGKLPFLQQPVRRAYADHMLIDAATRSSLELTASTEGRRDGSLVSSIDHTVTGAG 296 Query: 327 GRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRG 386 RL + +PL D I+ RLD + FF + +L ++ +LK SPD+ R L RL GRG Sbjct: 297 ARLLTADLGAPLMDIDVIHKRLDLVEFFFYDTLLREDVRDLLKGSPDLARVLGRLVAGRG 356 Query: 387 EPKDIAVIRDGIRSGINIL-NLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPT 445 P+D++++RDG+ + LF P L + + SL L L + P Sbjct: 357 TPRDLSLLRDGLNQAFILYEKLFSLEHKPALLEQILPDFRG-HGSLVDLLERALIEQPPI 415 Query: 446 FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEV 505 GGF+ G D +LDE RS+ +S+R IA+L+ Y E+T I LKI+HNN LGY IEV Sbjct: 416 DATQGGFIAKGYDHALDELRSMGGESRRAIAALEATYREKTGINTLKIRHNNVLGYHIEV 475 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEIL 565 S A L +++ F HRQT++ + RF EL + R T A A+ IE + L Sbjct: 476 PSRHADAL---MQANSGFTHRQTLAGVVRFNASELHEQAIRATQAGVQAIAIESKHLACL 532 Query: 566 SNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKT 625 + +E+ +++ + +A +D+S A A ++N+ RP +D+S F V GRHP+VE Sbjct: 533 IESTLEKRDNIAACADALARLDVSAGFADCAVQKNWTRPTVDDSCCFDVIQGRHPVVENA 592 Query: 626 LKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPA 685 L + S + F+AN+ +L N +LWL+TGPNMGGKSTFLRQNAL+ ++AQ GS+VPA Sbjct: 593 LVK-SGERFVANNTNLDPKN-----RLWLVTGPNMGGKSTFLRQNALLAVLAQTGSFVPA 646 Query: 686 SYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATL 745 A IG+VD+LFSRVG++DNLA GRSTFMVEM+ETA+IL+QATN+SFVILDE+GRGT+T Sbjct: 647 EKARIGLVDRLFSRVGASDNLARGRSTFMVEMVETAAILSQATNRSFVILDEVGRGTSTY 706 Query: 746 DGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKV 805 DGL+IAWA +E +H+ N CR L ATH+HELT L+ L ++ + ++ LH++ Sbjct: 707 DGLAIAWAVVEAVHDINACRCLFATHYHELTQLTSRLPALSLHHVRAKEWQGDLVLLHEM 766 Query: 806 IPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY-HHNQKDMRLY-YPEIQTKESK 863 G AD SYGI+V +LAGLP V+ RA ++L E +N L P + + Sbjct: 767 AEGAADRSYGIEVARLAGLPPVVLKRASEVLAQLENSSGKNNDSSANLSDLPLFGVQAFQ 826 Query: 864 NNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 L +N+ L+ + + L+ D ++P AL +Y +K Sbjct: 827 TVLPQNNPLY-DAVSELDADALTPRQALDIIYRLK 860 >gi|189183338|ref|YP_001937123.1| DNA mismatch repair protein MutS [Orientia tsutsugamushi str. Ikeda] gi|238692235|sp|B3CQY2|MUTS_ORITI RecName: Full=DNA mismatch repair protein mutS gi|189180109|dbj|BAG39889.1| DNA mismatch repair protein MutS [Orientia tsutsugamushi str. Ikeda] Length = 889 Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/896 (40%), Positives = 561/896 (62%), Gaps = 56/896 (6%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPM++QY++IK + ++ +R+GDFYELFFDDA++ S+ LG+ L K+GKH G+D+PMC Sbjct: 16 ATPMLQQYLDIKFTHQCCILLFRVGDFYELFFDDAIVVSKLLGLVLAKKGKHAGQDLPMC 75 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR-GNKSLVRRNVVRLVTPGTLTEDQ 143 G+P H Y+ +L++ H++A+CEQ+ESP EAKKR G K++V+R VVR++T GT+TE+ Sbjct: 76 GIPYHALESYLPRLVEQEHKVALCEQLESPEEAKKRNGYKAVVKREVVRILTSGTITEES 135 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 L+ NYL A+ + +I + D+ST F + + L S++ RI+P+EII SE Sbjct: 136 LIKANAPNYLAAIVIYKDIASIGYCDVSTAEFIVIDVSIHNLTSELSRINPKEIILSESL 195 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 ++ +LF+ V Q +F + ++ I +YY I T+D+ GS + + + A Sbjct: 196 QHNSSLLALFDNYKQKIVYQVESYFSFNKAQRTIQNYYEIITIDSIGSLNSTQVSVVGAI 255 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 + Y+ Q +K + +P+ ++ + ID++AR NLE+ TLSG+ + SLL ID ++T Sbjct: 256 LEYLSIVQKHSKSKLPFPQIVSYENFMLIDASARKNLELTSTLSGNLKGSLLSVIDATVT 315 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 GGRL + +++PL + IN+RL +FF QN L+ +++++K PD+ R+LSR+ I Sbjct: 316 NQGGRLLHKFLSTPLAEVNLINSRLQITDFFYQNLQLVENLRELVKLVPDIERALSRILI 375 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD- 442 + PKD+ I+ ++ ++I +EL +E+ + +P+ LE+ + + DD Sbjct: 376 AKALPKDLESIKISLKIALSI---------KKELNKVLEE-ENIPKYLEEIYNPLFGDDE 425 Query: 443 ------------LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L DGGF++ L+E R+L S I L+L+Y +ET I+ Sbjct: 426 LYDLLDSALLDDLSNSANDGGFIKSSYSTKLEELRNLIYNSSHFIEQLKLQYRQETCIET 485 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LKI HNN G FIEV+S +A + + +F+H+QT + RFTT EL LE ++ NA Sbjct: 486 LKICHNNVWGMFIEVSSKNAHKI-----TDSKFVHKQTTTTAVRFTTTELQTLEAKMLNA 540 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 A +E E L AI +SE L + ++ I++ID+ A ++ E NYCRP I + Sbjct: 541 KTMAAALEQEILAELCKAISLKSEKLSHLAKSISLIDVFCNFAYISHEFNYCRPEITSDL 600 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 F + +GRH ++EK + ++ + FI+NDC+L +N ++WL+TGPNM GKSTFLRQN Sbjct: 601 AFNIVNGRHTVIEKLITKKH-ESFISNDCNL-----QNDQRIWLITGPNMAGKSTFLRQN 654 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 A+IVI+AQ+G YVPA A IG+VDKLFSR+G+AD+LASG+STFMVEM+ET+ IL Q+T + Sbjct: 655 AIIVILAQIGCYVPAQSAQIGVVDKLFSRIGAADDLASGQSTFMVEMVETSVILAQSTFR 714 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S VILDEIGRGT+T DG+SIAW+ +EY+H RCR L ATH+HEL DL+ L+ N T+ Sbjct: 715 SLVILDEIGRGTSTYDGISIAWSCLEYIHSNIRCRCLFATHYHELVDLASKLQSLKNFTV 774 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM 850 ++ DSN+ + FL+K+I G A+ SYGI V +LAGLP V++RA +IL E HN+ D+ Sbjct: 775 KIHDSNDKLSFLYKIIEGAANKSYGIHVAELAGLPRIVLNRAKEILLELE----HNKADI 830 Query: 851 RLYYPEIQTKESKNNLSKNDKLFV--------EKIKCLNLDEMSPLTALKTLYAVK 898 +S NN++K+ + V E IK LN D+++P AL +Y +K Sbjct: 831 N---------QSNNNITKSMDIAVPPYPVKTIEIIKQLNPDQLTPKEALSIIYKIK 877 >gi|73666889|ref|YP_302905.1| DNA mismatch repair protein [Ehrlichia canis str. Jake] gi|108884793|sp|Q3YSJ8|MUTS_EHRCJ RecName: Full=DNA mismatch repair protein mutS gi|72394030|gb|AAZ68307.1| DNA mismatch repair protein MutS [Ehrlichia canis str. Jake] Length = 804 Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/814 (43%), Positives = 534/814 (65%), Gaps = 31/814 (3%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M+QY+ +K+ + L+FYR+GDFYELFFDDA+ S+ L I LTK+G ++PMCG Sbjct: 8 TPIMQQYMMLKNQYKECLLFYRLGDFYELFFDDAIETSKVLNIVLTKKG-----NVPMCG 62 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H++ Y+ +L+K+G+++AICEQ+E+P EAKKRG K+LV+R+VVR+VTPGT+ ED LL Sbjct: 63 VPFHSSESYLNRLVKLGYKVAICEQLETPEEAKKRGYKALVKRDVVRIVTPGTILEDSLL 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 ++NYL + + +AIAW+++STG+F +T++ ++ SD++RI+P+E++ S+K + Sbjct: 123 EAKENNYLCCIVNVNDNYAIAWLELSTGLFHYNTTDLRKIDSDLLRINPKEVLISDKLV- 181 Query: 206 HAEYKSLFETLGN--VAVAQ-PNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 E ++ TL ++ Q + FFD S S + + Y I+T+ G E + Sbjct: 182 --ELDLIYSTLKKYKFSITQYSSSFFDTSRSYNTLCSVYGISTLKGLGDLKDEEIAVCGS 239 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 + Y+K TQ N P + +P+ + +FID+AA NLE+ T SG E SL+ +IDY+I Sbjct: 240 LLEYVKATQKGNLPKLEFPKAYGDRDFMFIDAAALRNLELFNTQSGDLEGSLISSIDYTI 299 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGRL +++PL S IN RLD + FF+ N +L +++ L+ D+ R L+R+K Sbjct: 300 TACGGRLLKRCLSAPLACSYAINRRLDIVEFFVNNKVLYKNVRETLRGIADIERILTRVK 359 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 +GR PKD+ ++ + ++NL K D + +L + L KTLS++L + Sbjct: 360 VGRCSPKDLYALKLTLDKTCILVNLLSKFD-TSVVSDFCTRLGRY-DDLCKTLSNVLIPN 417 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 + +DGGF++ D L E +++ S +I L+ KY T I+NLKI +NN LGY+ Sbjct: 418 NVSNVKDGGFIKPDYDVQLSEYIYIQNYSNNLIQELRDKYRNITNIQNLKILYNNILGYY 477 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 +EV SA+ L D KD FIHRQT++N R+TT EL LE++I +A ++A+ +E++ F Sbjct: 478 VEV---SANHLIND---KD-FIHRQTLANSIRYTTSELKALESKIISARDAAISLEVKIF 530 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 L IIE ++ + + ++ ID+ + A LA + +Y RP++D+S F ++ GRHP+V Sbjct: 531 GQLCTRIIEHADEITMTAHAVSEIDMLTSFAELAIQYSYTRPVVDDSYEFNIQKGRHPVV 590 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 E+ K F+AND DL+ ++ L+TGPNM GKSTFLRQNALI I+A +GS+ Sbjct: 591 ERNGK------FVANDIDLA-----QMQRVHLITGPNMAGKSTFLRQNALIGILAHIGSF 639 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA AHIG++DK+FSRVG++DN+A G STFMVEM ETA+I+NQAT++SFVILDEIGRGT Sbjct: 640 VPAYSAHIGVIDKIFSRVGASDNIAFGYSTFMVEMTETAAIINQATDKSFVILDEIGRGT 699 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFL 802 T DGLSIAW+ IE +H N+ R + ATH+HEL+ L + L+ ++V + N ++FL Sbjct: 700 GTYDGLSIAWSVIEQIHNVNKSRAIFATHYHELSKLDECLENIKCFCMKVEEWNGKVVFL 759 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 H++IPG + SYGI V KLAG P +V+ RA D++ Sbjct: 760 HEIIPGSTNKSYGIHVAKLAGFPQSVLDRAEDLM 793 >gi|42520087|ref|NP_966002.1| DNA mismatch repair protein [Wolbachia endosymbiont of Drosophila melanogaster] gi|42409824|gb|AAS13936.1| DNA mismatch repair protein MutS [Wolbachia endosymbiont of Drosophila melanogaster] Length = 820 Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/843 (42%), Positives = 536/843 (63%), Gaps = 54/843 (6%) Query: 29 MRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPV 88 M QY+ +K+ D L+FYR+GDFYELFFDDA+ A++ L I LTKRG G++IPMCGVP Sbjct: 1 MEQYLNLKAQYKDHLLFYRLGDFYELFFDDAIKAAKLLNIVLTKRGNSCGQEIPMCGVPA 60 Query: 89 HTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPT 148 H++ Y+ KLI +G ++AIC+Q+E+ EAKKRG KS+V+R+VVR+VTPGT+ ED LL Sbjct: 61 HSSESYLHKLIDLGFKVAICDQLETADEAKKRGYKSIVKRDVVRVVTPGTIIEDSLLEDK 120 Query: 149 DSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHAE 208 +NYL ++ E+AI+W+++STG F + ++ L SD++RI PRE++ SEK + Sbjct: 121 SNNYLASIVEQNDEYAISWLELSTGKFFHTLTSLKALDSDLLRISPRELLISEKFTEDEK 180 Query: 209 YKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIK 268 +S+ + FF++S S + ++Y I + + G+FS+VE A A + Y++ Sbjct: 181 IRSILKNYKISITQHAQSFFEYSKSHRTLCEFYKIRELGSIGNFSKVEIMACGALLEYVR 240 Query: 269 KTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGR 328 TQ + P + +P+ Q+ + ID++AR NLE+ T G ++ SL+ ID+++T +GGR Sbjct: 241 VTQRGSIPRLEFPKTYKQQNFMLIDTSARRNLELFSTQFGEKKGSLISVIDHTVTASGGR 300 Query: 329 LFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEP 388 L + +ASPL S IN RL + FF+ N I++IL + PD+ RSLSRL +GRG P Sbjct: 301 LLKQMLASPLACSKAINLRLSTAQFFVNNHDSRRKIREILSNIPDIERSLSRLILGRGSP 360 Query: 389 KDIAVIRDGIRSGINILNLFLK------NDLPEEL----------RGAV------EKLKK 426 KD+ +++ G+ + + K LP++ R + +L Sbjct: 361 KDMNLLKIGLGKTLELSEFLCKIESGENGSLPQQYVIQTEIQPASRAGITVKSDESELST 420 Query: 427 LPQSL-------EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQ 479 + +SL E S++L ++L + K +GGF+ ++ L E + + S +++ L+ Sbjct: 421 IHKSLGNHKDLFELLNSAILDNNLSSVK-EGGFIHSKYNSELSELSYILNNSNKLVTKLR 479 Query: 480 LKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLE 539 Y + T I LKI HNN LGY++EV+++ + D FIHRQ+++N R+TT E Sbjct: 480 ESYRDLTGIAALKILHNNILGYYVEVSANHKI-------TSDIFIHRQSLANSMRYTTNE 532 Query: 540 LIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQ 599 L +LEN+I A ++A+ +E++ F L + + ++SE + A+ +A +DI A A LA + Sbjct: 533 LKELENKILTARDAAIGLEMKIFSELCSEVAKESEKIALAANALAKLDIRTAFAELAVQN 592 Query: 600 NYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPN 659 NY +PIID+S F + GRHP+VE K FIAN +L+ + L+TGPN Sbjct: 593 NYVKPIIDDSKEFNICSGRHPVVEVNDK------FIANSINLA--------GIHLITGPN 638 Query: 660 MGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIE 719 M GKSTFLRQNALI I+A MGS+VPA AHIG++DK+FSRVG+ DN+ +G STFMVEMIE Sbjct: 639 MAGKSTFLRQNALIAILAHMGSFVPAESAHIGVIDKIFSRVGATDNITAGYSTFMVEMIE 698 Query: 720 TASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLS 779 TA+I+NQAT++S VILDEIGRGT DGLSIA A IE++H N+CR + ATH+HELT +S Sbjct: 699 TATIVNQATDRSLVILDEIGRGTGVYDGLSIAQAVIEHIHNVNKCRAIFATHYHELTKVS 758 Query: 780 KSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF 839 K LK +++ + N +IFLH+VI GIAD SYGI V KLAG P++V++RA ++ F Sbjct: 759 KYLKNVKCFCVKIREWNGEVIFLHEVIEGIADESYGIHVAKLAGFPDSVLNRASEV---F 815 Query: 840 EKL 842 E+L Sbjct: 816 EEL 818 >gi|85375667|ref|YP_459729.1| DNA mismatch repair protein MutS [Erythrobacter litoralis HTCC2594] gi|122543171|sp|Q2N5V9|MUTS_ERYLH RecName: Full=DNA mismatch repair protein mutS gi|84788750|gb|ABC64932.1| DNA mismatch repair ATPase [Erythrobacter litoralis HTCC2594] Length = 879 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/895 (41%), Positives = 530/895 (59%), Gaps = 49/895 (5%) Query: 25 STPMMRQYIEIKS----INPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 STPMM QY+ +K+ D L+FYRMGDF+ELFF+DA +AS L I LT RGK G+ Sbjct: 5 STPMMEQYLALKAEASAGGDDCLLFYRMGDFFELFFEDAKVASGILDIALTARGKDSGEP 64 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRG-------NKSLVRRNVVRL 133 +PMCGVPVH+A Y+ +LIK G R+AI EQ+E+P EAK R +K LV+R++VR Sbjct: 65 VPMCGVPVHSAEGYLARLIKAGQRVAIAEQVETPEEAKARARREGKPVSKVLVKRDIVRF 124 Query: 134 VTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRID 193 VT GTLTE+ LL P +N L AV +R IA DISTG ++ D + + + R+ Sbjct: 125 VTAGTLTEEALLEPRRANVLAAVCEVRGTLGIAHCDISTGRMELEECAPDAMDAALARLG 184 Query: 194 PREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS 253 E++ E ++ A +P F E+R+ +++ T+D FG FS Sbjct: 185 ASEVVAPEN----------WDGAPADATLRPPSEFASDEGEARLKAIHDVATLDGFGDFS 234 Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 + AA I Y+ P + P ++ L +D+A RS+LEIL + +R S Sbjct: 235 RAMLAAAGGLIGYLDHAGRGTLPFLLPPVVARGEAKLAMDAATRSSLEILVSQQDARSGS 294 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L+ +D +TGAG R AE +A+PLT+ I RL ++FF +P+L +++++++ PD Sbjct: 295 LIAAVDRCVTGAGARQLAEDLAAPLTEREPIERRLALVHFFHADPLLRADLREVMRAVPD 354 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILN-LFLKNDLP---EELRGAVEKLKKLPQ 429 + R+L R+ GRG P+D+ IRDG+ I + L K D P ++L A+ L Sbjct: 355 LARALGRIVAGRGSPRDLGQIRDGLAEARRIRDYLASKPDRPALLDDLLPAMGGHGALVD 414 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 L++ L PT + GG++ G DA+LDE R + ++R IA+L+ +Y ET I+ Sbjct: 415 HLQRALVPAP----PTAREQGGYIAAGFDAALDELRDVSGNARRAIAALETRYRGETGIE 470 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LKIKHN LGYFIEV + A L + F HRQTM+ RF +L+L + +RI+ Sbjct: 471 RLKIKHNGVLGYFIEVPAKHADAL---MAPDSGFTHRQTMAGAVRFNSLQLHEEASRISE 527 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 A AL E FE L + + E++ + +A ID++ LA A E ++C+P I + Sbjct: 528 AGGRALAAEEAHFEELVATVGDAREAIARTADALARIDVAAGLAERAAEGDWCKPAITDE 587 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 + GRHP+VE LKQ + F+ NDC LS S +LWL+ GPNMGGKSTFLRQ Sbjct: 588 RVLDIVGGRHPVVEAALKQAGDR-FVPNDCTLS-----GSDRLWLIGGPNMGGKSTFLRQ 641 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 NALIV++AQ GSYVPAS A IG+VD+LFSRVG++DNLA GRSTFMVEM+ETA+IL QA++ Sbjct: 642 NALIVLLAQAGSYVPASTATIGLVDRLFSRVGASDNLARGRSTFMVEMVETAAILAQASD 701 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 +SFVILDE+GRGT+T DGL++AWA +E +HET +CR L ATH+HEL L+++ Sbjct: 702 RSFVILDEVGRGTSTYDGLALAWAVVEAVHETIQCRCLFATHYHELARLAETCDSLSLHH 761 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ-- 847 ++ + ++ LH++ G AD SYG+ V KLAG+P V+ RA +L+ EK Sbjct: 762 VRAREWKGDLVLLHELAEGPADRSYGLAVAKLAGVPAPVVKRARSVLEKLEKGREETGGL 821 Query: 848 ----KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ L+ ++ + K S EK+ L++D +SP AL LYA+K Sbjct: 822 AAGLGELPLFAAALEERPEKIGDSMR-----EKLAALDIDALSPREALDLLYALK 871 >gi|88658581|ref|YP_507620.1| DNA mismatch repair protein [Ehrlichia chaffeensis str. Arkansas] gi|123493029|sp|Q2GG13|MUTS_EHRCR RecName: Full=DNA mismatch repair protein mutS gi|88600038|gb|ABD45507.1| DNA mismatch repair protein MutS [Ehrlichia chaffeensis str. Arkansas] Length = 804 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/811 (43%), Positives = 518/811 (63%), Gaps = 25/811 (3%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M+QY+ +KS + L+FYR+GDFYELFFDDA+ SR L I LTK+G ++PMCG Sbjct: 8 TPIMQQYMMLKSQYKEYLLFYRLGDFYELFFDDAIETSRILNIVLTKKG-----NVPMCG 62 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H++ Y+ +L+K+G++IAICEQ+E+ EAKKRG K+LV+R+VVR+VTPGT+ ED LL Sbjct: 63 VPFHSSESYLNRLVKLGYKIAICEQLETSEEAKKRGYKALVKRDVVRIVTPGTILEDSLL 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 ++NYL + + +AIAW+++STG+F T+ +L SD+ RI+P+E++ S+K + Sbjct: 123 EAKENNYLSCIVNVDHNYAIAWLELSTGLFYYHTTELHKLDSDLFRINPKEVLISDKLVE 182 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAIS 265 S+ FFD S S + + + Y I+T+ G E + + Sbjct: 183 LDSIYSILRKYKFSVTQYSGSFFDVSRSYNTLCNVYGISTLKGLGDLKNEEIAVCGSLLE 242 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y+K TQ N P + +P+ +FID+AA NLE+ T SG E SL+ +IDY+IT Sbjct: 243 YVKATQKGNLPQLEFPKAYSKGDFMFIDAAALRNLELFCTQSGDLEGSLISSIDYTITAC 302 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 GGRL +++PL S IN RLD + FF+ + L +++ L+ D+ R L+R+K+G+ Sbjct: 303 GGRLLKRCLSAPLACSHAINRRLDIVEFFVNDRTLCRGVRETLRGIADIERILTRIKVGK 362 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPT 445 PKD+ ++ + +L+L K D + +L K L KTL +L + Sbjct: 363 CSPKDLYALKLTLDKIFVLLDLLHKFD-SSVVGDFCSRLGKY-DDLCKTLDDVLIPNNVN 420 Query: 446 FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEV 505 +DGGF+ DA L E ++ S +I L+ KY T I++LKI +NN LGY++EV Sbjct: 421 NVKDGGFINPDYDAQLSEYIYIQSYSNDLIQELRDKYRNITNIQSLKILYNNILGYYVEV 480 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEIL 565 +SS L S FIHRQT++N R+TT EL LE++I +A ++A+ +E++ F L Sbjct: 481 SSSY-------LISDKDFIHRQTLANSIRYTTSELKALESKIISARDAAINLEVKIFGQL 533 Query: 566 SNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKT 625 IIE ++ + + IA ID+ + A LA + +Y +PI+D+S F +K GRHP+VE+ Sbjct: 534 CTCIIEVADKITMTAHAIAEIDMLTSFAELAIQYSYTKPIVDDSYEFNIKKGRHPVVERN 593 Query: 626 LKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPA 685 K F+AND DLS ++ L+TGPNM GKSTFLRQNALI I+A +GS+VPA Sbjct: 594 GK------FVANDIDLSLMQ-----RVHLITGPNMAGKSTFLRQNALIGILAHIGSFVPA 642 Query: 686 SYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATL 745 +AHIG++DK+FSRVG++DN+ASG STFMVEM ETA+I+NQAT++SFVILDEIGRGT T Sbjct: 643 QHAHIGVIDKVFSRVGASDNIASGHSTFMVEMTETAAIINQATDKSFVILDEIGRGTGTY 702 Query: 746 DGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKV 805 DGLSIAW+ IE +H N+ R + ATH+HEL+ L + L+ ++V + N ++FLH++ Sbjct: 703 DGLSIAWSVIEQIHNVNKSRAIFATHYHELSKLDRYLENIKCFCMKVEEWNGKVVFLHEI 762 Query: 806 IPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 IPG + SYGI V KLAG P +V+ RA D++ Sbjct: 763 IPGSTNKSYGIHVAKLAGFPQSVLDRAEDLM 793 >gi|68171124|ref|ZP_00544533.1| MutS 1 protein [Ehrlichia chaffeensis str. Sapulpa] gi|67999449|gb|EAM86089.1| MutS 1 protein [Ehrlichia chaffeensis str. Sapulpa] Length = 795 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/811 (43%), Positives = 518/811 (63%), Gaps = 25/811 (3%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M+QY+ +KS + L+FYR+GDFYELFFDDA+ SR L I LTK+G ++PMCG Sbjct: 8 TPIMQQYMMLKSQYKEYLLFYRLGDFYELFFDDAIETSRILNIVLTKKG-----NVPMCG 62 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H++ Y+ +L+K+G++IAICEQ+E+ EAKKRG K+LV+R+VVR+VTPGT+ ED LL Sbjct: 63 VPFHSSESYLNRLVKLGYKIAICEQLETSEEAKKRGYKALVKRDVVRIVTPGTILEDSLL 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 ++NYL + + +AIAW+++STG+F T+ +L SD+ RI+P+E++ S+K + Sbjct: 123 EAKENNYLSCIVNVDHNYAIAWLELSTGLFYYHTTELHKLDSDLFRINPKEVLISDKLVE 182 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAIS 265 S+ FFD S S + + + Y I+T+ G E + + Sbjct: 183 LDSIYSILRKYKFSVTQYSGSFFDVSRSYNTLCNVYGISTLKGLGDLKNEEIAVCGSLLE 242 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y+K TQ N P + +P+ +FID+AA NLE+ T SG E SL+ +IDY+IT Sbjct: 243 YVKATQKGNLPQLEFPKAYSKGDFMFIDAAALRNLELFCTQSGDLEGSLISSIDYTITAC 302 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 GGRL +++PL S IN RLD + FF+ + L +++ L+ D+ R L+R+K+G+ Sbjct: 303 GGRLLKRCLSAPLACSHAINRRLDIVEFFVNDRTLCRGVRETLRGIADIERILTRIKVGK 362 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPT 445 PKD+ ++ + +L+L K D + +L K L KTL +L + Sbjct: 363 CSPKDLYALKLTLDKIFVLLDLLHKFD-SSVVGDFCSRLGKY-NDLCKTLDDVLIPNNVN 420 Query: 446 FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEV 505 +DGGF+ DA L E ++ S +I L+ KY T I++LKI +NN LGY++EV Sbjct: 421 NVKDGGFINPDYDAQLSEYIYIQSYSNDLIQELRDKYRNITNIQSLKILYNNILGYYVEV 480 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEIL 565 +SS L S FIHRQT++N R+TT EL LE++I +A ++A+ +E++ F L Sbjct: 481 SSSY-------LISDKDFIHRQTLANSIRYTTSELKALESKIISARDAAINLEVKIFGQL 533 Query: 566 SNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKT 625 IIE ++ + + IA ID+ + A LA + +Y +PI+D+S F +K GRHP+VE+ Sbjct: 534 CTCIIEVADKITMTAHAIAEIDMLTSFAELAIQYSYTKPIVDDSYEFNIKKGRHPVVERN 593 Query: 626 LKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPA 685 K F+AND DLS ++ L+TGPNM GKSTFLRQNALI I+A +GS+VPA Sbjct: 594 GK------FVANDIDLSLMQ-----RVHLITGPNMAGKSTFLRQNALIGILAHIGSFVPA 642 Query: 686 SYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATL 745 +AHIG++DK+FSRVG++DN+ASG STFMVEM ETA+I+NQAT++SFVILDEIGRGT T Sbjct: 643 QHAHIGVIDKVFSRVGASDNIASGHSTFMVEMTETAAIINQATDKSFVILDEIGRGTGTY 702 Query: 746 DGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKV 805 DGLSIAW+ IE +H N+ R + ATH+HEL+ L + L+ ++V + N ++FLH++ Sbjct: 703 DGLSIAWSVIEQIHNVNKSRAIFATHYHELSKLDRYLENIKCFCMKVEEWNGKVVFLHEI 762 Query: 806 IPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 IPG + SYGI V KLAG P +V+ RA D++ Sbjct: 763 IPGSTNKSYGIHVAKLAGFPQSVLDRAEDLM 793 >gi|58616997|ref|YP_196196.1| DNA mismatch repair protein [Ehrlichia ruminantium str. Gardel] gi|75507513|sp|Q5FHE8|MUTS_EHRRG RecName: Full=DNA mismatch repair protein mutS gi|58416609|emb|CAI27722.1| DNA mismatch repair protein MutS [Ehrlichia ruminantium str. Gardel] Length = 804 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/827 (42%), Positives = 532/827 (64%), Gaps = 32/827 (3%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 N S TP+M+QY+ +K + L+FYR+GDFYELFFDDA+ S+ L I LTK+G + Sbjct: 3 NSNSITPVMQQYVTLKQQYKEYLLFYRLGDFYELFFDDAIKTSKILNIVLTKKG-----N 57 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 +PMCGVP H++ Y+ KL+K+G++IAICEQ+E+ EA+KRG KSLV+R+VVR+VTPGT+ Sbjct: 58 VPMCGVPFHSSETYLNKLVKLGYKIAICEQLETSEEARKRGYKSLVKRDVVRIVTPGTIV 117 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 ED LL +SNYL + RI+ AIAW+++STG+F ++ +L SD++RI P+E++ + Sbjct: 118 EDSLLEAKESNYLACIVRIKDSCAIAWLELSTGLFCYHMTHISKLDSDLLRIGPKELLVA 177 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 + L S+ + + FFD + + + + + Y ++T+ G VE + Sbjct: 178 DDLLEIEAVYSIIKKYRFSITQYSSSFFDENRAYNTLCNVYGVSTLKGLGDLKGVEISVC 237 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 + + Y+ TQ + P +G+P+ +FID+AA NLE+ T SG E SL+ +ID+ Sbjct: 238 GSLLEYVIATQKGSLPKLGFPKAYVQSDFMFIDAAALRNLELFSTQSGELEGSLIASIDF 297 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 ++T +GGRL +++PL + IN RL ++ FF+ N L ++++L+ D+ R L+R Sbjct: 298 TVTASGGRLLKRCLSAPLASADAINRRLSAVEFFVNNQNLYKSVRQVLRGIADIERILTR 357 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKN--DLPEELRGAVEKLKKLPQSLEKTLSSM 438 +KI R PKD+ ++ + ++ L K D+ E + + + L L +S+ Sbjct: 358 VKIARCSPKDLYSLKLTLEKTYELVELLCKFNIDIISEFCSRLGRYEDLICILN---NSL 414 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 L + + + K DGGF+ DA L E +++ S ++I L+ +Y T I++LKI +NN Sbjct: 415 LQNSVSSVK-DGGFINPECDAQLSEYIYIQECSNQLIQELRDRYRNITNIQSLKILYNNI 473 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 LGY++EV+S+ L FIHRQ+++N R+TT EL +LE++I +A ++++ +E Sbjct: 474 LGYYVEVSSN-------HLIDDKNFIHRQSLANNVRYTTTELKELESKIISAKDASISLE 526 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 ++ F L + +I+ ++ + + IA ID+ + A LA + +Y +PIID+S F +K G+ Sbjct: 527 IKIFGQLCSDVIKYADKITITAHAIAEIDMLTSFAELAVQYSYSKPIIDDSYEFNIKKGK 586 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ K FI ND +LS + ++ L+TGPNM GKSTFLRQNALI I+A Sbjct: 587 HPVVERNGK------FITNDINLS-----SEQRVHLITGPNMAGKSTFLRQNALIGILAH 635 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA YAHIG++DK+FSRVG++DN+ G STFMVEMIETA+++NQAT +SFVILDEI Sbjct: 636 IGSFVPAEYAHIGVIDKVFSRVGASDNIVCGYSTFMVEMIETAAVINQATERSFVILDEI 695 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT T DGLSIAW+ IE +H N+ R + ATH+HEL+ L K LK ++V + + Sbjct: 696 GRGTGTYDGLSIAWSVIEQIHNVNKSRAIFATHYHELSKLDKYLKHIKCFCMKVEEWDGK 755 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA---YDILKTFEKL 842 ++FLH++IPG +D SYGI V KLAG P +V++RA D LKT E L Sbjct: 756 VVFLHEIIPGASDKSYGIHVAKLAGFPQSVVNRAEYLMDKLKTNEDL 802 >gi|148284577|ref|YP_001248667.1| DNA mismatch repair protein [Orientia tsutsugamushi str. Boryong] gi|189083163|sp|A5CDU2|MUTS_ORITB RecName: Full=DNA mismatch repair protein mutS gi|146740016|emb|CAM80100.1| DNA mismatch repair protein [Orientia tsutsugamushi str. Boryong] Length = 889 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/896 (40%), Positives = 555/896 (61%), Gaps = 56/896 (6%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPM++QY++IK + ++ +R+GDFYELFFDDA++ S+ LG+ L K+GKH G+D+PMC Sbjct: 16 ATPMLQQYLDIKFTHQCCILLFRVGDFYELFFDDAIVVSKLLGLILAKKGKHAGQDLPMC 75 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR-GNKSLVRRNVVRLVTPGTLTEDQ 143 G+P H Y+ +L++ H++A+CEQ+ESP EAKKR G K++V+R VVR++T GT+TE+ Sbjct: 76 GIPYHALESYLPRLVEQEHKVALCEQLESPEEAKKRNGYKAVVKREVVRIITSGTITEES 135 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 L+ NYL A+ + +I + D+ST F + L S++ RI+P+EII SE Sbjct: 136 LIKANVPNYLAAIVIHKDIASIGYCDVSTAEFIVIDVAIHNLTSELSRINPKEIILSESL 195 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 ++ +LF+ V Q +F + ++ I +YY I T+D+ GS + + +A A Sbjct: 196 QHNSGLLALFDNYKQKIVYQVESYFSFNKAQRVIQNYYEIITIDSIGSLNSTQVSAVGAI 255 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 + Y+ Q +K + +P+ ++ + ID++AR NLE+ TLSG+ + SLL ID ++T Sbjct: 256 LEYLSIMQKHSKSKLPFPQIVSYENFMLIDASARKNLELTSTLSGNFKGSLLSIIDATVT 315 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 GGRL + +++PL + IN+RL +FF QN L+ +++++K PD+ R+LSR+ I Sbjct: 316 NQGGRLLHKFLSTPLAEVNLINSRLQITDFFYQNLQLVENLRQLVKLVPDIERALSRILI 375 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD- 442 + PKD+ I+ ++ ++I +EL +E+ P+ LE+ + + D+ Sbjct: 376 AKALPKDLESIKISLKIALSI---------KKELNKVLEE-GNTPKYLEEIYNPLFGDNE 425 Query: 443 ------------LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L D GF++ L+E R+L S I L+L+Y +ET I+ Sbjct: 426 LYELLDSALLDDLSNSANDCGFIKSSYSTKLEELRNLIHNSSNFIEQLKLQYRQETCIET 485 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LKI HNN G FIEV+S +A + + +F+H+QT + RFTT EL LE ++ NA Sbjct: 486 LKICHNNVWGMFIEVSSKNAHKI-----TDSKFVHKQTTTTAVRFTTTELQTLEAKMLNA 540 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 A +E E L AI +SE L + ++ I++ID+ A ++ E NYCRP I + Sbjct: 541 KTMAAALEQEILAELCKAISLKSEKLSHLAKSISLIDVFCNFAYISHEYNYCRPEITSDL 600 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 F + DGRH ++EK + ++ + FI+NDC+L +N ++WL+TGPNM GKSTFLRQN Sbjct: 601 AFNIVDGRHAVIEKLITKKH-ESFISNDCNL-----QNDQRIWLITGPNMAGKSTFLRQN 654 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 A+IVI+AQ+G YVPA A IG+VDKLFSR+G+AD+LASG+STFMVEM+ET+ IL Q+T Sbjct: 655 AIIVILAQIGCYVPAQSAQIGVVDKLFSRIGAADDLASGQSTFMVEMVETSVILAQSTFM 714 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S VILDEIGRGT+T DG+SIAW+ +EY+H RCR L ATH+HEL DL+ L N T+ Sbjct: 715 SLVILDEIGRGTSTYDGISIAWSCLEYIHSNIRCRCLFATHYHELVDLASKLLSLKNFTV 774 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM 850 ++ DSN+ + FL+K+I G A+ SYGI V +LAGLP V++RA +IL E HN+ Sbjct: 775 KIHDSNDKLSFLYKIIEGAANKSYGIHVAELAGLPRIVLNRAKEILLELE----HNK--- 827 Query: 851 RLYYPEIQTKESKNNLSKNDKLFV--------EKIKCLNLDEMSPLTALKTLYAVK 898 + +S NN++K+ + V E IK LN D+++P AL +Y +K Sbjct: 828 ------VNINQSNNNITKSIDIAVPPYPVKTIEIIKQLNPDQLTPKEALSIIYKIK 877 >gi|326385773|ref|ZP_08207402.1| DNA mismatch repair protein [Novosphingobium nitrogenifigens DSM 19370] gi|326209752|gb|EGD60540.1| DNA mismatch repair protein [Novosphingobium nitrogenifigens DSM 19370] Length = 862 Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/881 (41%), Positives = 526/881 (59%), Gaps = 34/881 (3%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY+ +K L+FYRMGDF+ELFF+DA AS+ L I+LT RG+H G+ +PMCGVP Sbjct: 1 MMAQYLALKQQADGCLLFYRMGDFFELFFEDARHASQILDISLTSRGEHAGEPVPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGN-KSLVRRNVVRLVTPGTLTEDQLLS 146 VH+A Y+ +LI+ G R+AI EQ+E+P EAKKRG K+LV R++VR VT GTLTE+ LL Sbjct: 61 VHSAESYLARLIRAGCRVAIAEQVETPEEAKKRGGSKALVARDIVRFVTAGTLTEEALLE 120 Query: 147 PTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE--KEL 204 P +N L A+ +R IA DISTG ++ + + + R+ E++ SE +L Sbjct: 121 PRRANVLAALCLVRDRVGIAACDISTGRMELEECAPGDIGAALARLGASEMVVSEDGGDL 180 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 HA + AV++P+ FD E+ + + + + T+D FG F++ +AAA + Sbjct: 181 GHA--------IPADAVSRPSRAFDSERGETLLREIHGVATLDGFGQFTRAMLSAAAGLV 232 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 Y+ P + P + +D A R++LE+L G R SL++ +D +TG Sbjct: 233 DYLDHVGRGKLPFLLPPTMRTAGQAMAMDEATRASLEVLVAQGGGRRGSLVEAVDRCVTG 292 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 AG RL +E +A+PLT+ I RL+ +++ +P+L ++ +L+++PD+ R++ R+ G Sbjct: 293 AGARLLSEDLAAPLTEIGTIRRRLELVSWLHDDPLLRGDVRALLRAAPDIGRAIGRVVAG 352 Query: 385 RGEPKDIAVIRDGIRSGINILNLF-LKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 RG P+D+ +RDG+ + + L +++DLP+ V L+ +L + L Sbjct: 353 RGSPRDLGQLRDGLGEAMRLAELIAMRSDLPDLAALLVPHLRG-HGALIDLFARALVPAP 411 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 PT + GGF+ +G DA+LDE R S+R IA+L+ KY +ET + LKI+HN LGYFI Sbjct: 412 PTERGQGGFIAEGYDAALDELRLAAGNSRRAIAALEAKYRDETGVSALKIRHNGVLGYFI 471 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EV + A L + F HRQTM+ RF L L + +RI A AL E FE Sbjct: 472 EVPARHADRL---MAPDSGFTHRQTMAGAVRFNALALHEEASRIAEAGGHALAAEESHFE 528 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L + E++ + +A D++ LA A E + P I + + GRHP+VE Sbjct: 529 DLCARAVAAREAIARTADALARFDVAAGLAERAAEGGWSLPRIVDEPVLEIAGGRHPVVE 588 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 L ++ + F+ANDC L P+D+ LWL+ GPNMGGKSTFLRQNALIV++AQ GS+V Sbjct: 589 AALSARNER-FVANDCRL-VPDDR----LWLVGGPNMGGKSTFLRQNALIVLLAQAGSFV 642 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA A IGIVD+LFSRVG++DNLA GRSTFMVEM+ETA+IL QA +SFVILDE+GRGT+ Sbjct: 643 PAEAATIGIVDRLFSRVGASDNLARGRSTFMVEMVETAAILAQAGERSFVILDEVGRGTS 702 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DGL++AWA +E +HE NRCR L ATH+HEL L++S ++ + ++ LH Sbjct: 703 TYDGLALAWAVVEAVHEVNRCRCLFATHYHELVRLAESCGSLSLHHVRAREWKGDLVLLH 762 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK------LYHHNQKDMRLYYPEI 857 +V G AD SYG+ V +LAG+P VI RA +L+ EK D+ L+ I Sbjct: 763 EVAEGPADKSYGLAVARLAGVPQPVIKRARSVLERLEKGRATTGGLAAGLDDLPLFAAAI 822 Query: 858 QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + E K + + EK+ L++D +SP AL LY +K Sbjct: 823 EAAEEKVDALR------EKLNSLDIDALSPRAALDLLYDLK 857 >gi|57239001|ref|YP_180137.1| DNA mismatch repair protein MutS [Ehrlichia ruminantium str. Welgevonden] gi|58578938|ref|YP_197150.1| DNA mismatch repair protein [Ehrlichia ruminantium str. Welgevonden] gi|81672822|sp|Q5HBQ7|MUTS_EHRRW RecName: Full=DNA mismatch repair protein mutS gi|57161080|emb|CAH57987.1| DNA mismatch repair protein MutS [Ehrlichia ruminantium str. Welgevonden] gi|58417564|emb|CAI26768.1| DNA mismatch repair protein MutS [Ehrlichia ruminantium str. Welgevonden] Length = 804 Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/827 (42%), Positives = 530/827 (64%), Gaps = 32/827 (3%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 N S TP+M+QY+ +K + L+FYR+GDFYELFFDDA+ S+ L I LTK+G + Sbjct: 3 NSNSITPVMQQYVTLKQQYKEYLLFYRLGDFYELFFDDAIKTSKILNIVLTKKG-----N 57 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 +PMCGVP H++ Y+ KL+K+G++IAICEQ+E+ EA+KRG KSLV+R+VVR+VTPGT+ Sbjct: 58 VPMCGVPFHSSETYLNKLVKLGYKIAICEQLETSEEARKRGYKSLVKRDVVRIVTPGTIV 117 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 ED LL +SNYL + I+ AIAW+++STG+F + +L SD++RI P+E++ + Sbjct: 118 EDSLLEAKESNYLACIVMIKDSCAIAWLELSTGLFCYHMTYISKLDSDLLRIGPKELLVA 177 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 + L S+ + + FFD + + + + + Y ++T+ G VE + Sbjct: 178 DDLLEIEAVYSIIKKYRFSITQYSSSFFDENRAYNTLCNVYGVSTLKGLGDLKGVEISVC 237 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 + + Y+ TQ + P +G+P+ +FID+AA NLE+ T SG E SL+ +ID+ Sbjct: 238 GSLLEYVIATQKGSLPKLGFPKAYVQSDFMFIDAAALRNLELFSTQSGELEGSLIASIDF 297 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 ++T +GGRL +++PL + IN RL + FF+ N L ++++L+ D+ R L+R Sbjct: 298 TVTASGGRLLKRCLSAPLASADAINRRLSVVEFFVNNQNLYKSVRQVLRGIADIERILTR 357 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKN--DLPEELRGAVEKLKKLPQSLEKTLSSM 438 +KI R PKD+ ++ + ++ L K D+ E + + + L L +S+ Sbjct: 358 VKIARCSPKDLYSLKLTLEKTCELVELLCKFNIDIISEFCLRLGRYEDLICILN---NSL 414 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 L + + + K DGGF+ DA L E +++ S ++I L+ +Y T I++LKI +NN Sbjct: 415 LQNSVSSVK-DGGFINPECDAQLSEYIYIQECSNQLIQELRDRYRNITNIQSLKILYNNI 473 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 LGY++EV+S+ L FIHRQ+++N R+TT EL +LE++I +A ++++ +E Sbjct: 474 LGYYVEVSSNH-------LIDDKNFIHRQSLANNVRYTTTELKELESKIISAKDASISLE 526 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 ++ F L + +I+ ++ + + IA ID+ + A LA + +Y +PIID+S F +K G+ Sbjct: 527 IKIFGQLCSDVIKYADKITITAHTIAEIDMLTSFAELAVQYSYSKPIIDDSYEFNIKKGK 586 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ K FIAND +LS + ++ L+TGPNM GKSTFLRQNALI I+A Sbjct: 587 HPVVERNGK------FIANDINLS-----SEQRVHLITGPNMAGKSTFLRQNALIGILAH 635 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA YAHIG++DK+FSRVG++DN+ G STFMVEMIETA+++NQAT +SFVILDEI Sbjct: 636 IGSFVPAEYAHIGVIDKVFSRVGASDNIVCGYSTFMVEMIETAAVINQATERSFVILDEI 695 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT T DGLSIAW+ IE +H N+ R + ATH+HEL+ L K LK ++V + + Sbjct: 696 GRGTGTYDGLSIAWSVIEQIHNVNKSRAIFATHYHELSKLDKYLKHIKCFCMKVEEWDGK 755 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA---YDILKTFEKL 842 ++FLH++IPG +D SYGI V KLAG P +V++RA D LKT E L Sbjct: 756 VVFLHEIIPGASDKSYGIHVAKLAGFPQSVVNRAEYLMDKLKTNEDL 802 >gi|190570820|ref|YP_001975178.1| DNA mismatch repair protein MutS [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019654|ref|ZP_03335459.1| DNA mismatch repair protein MutS [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357092|emb|CAQ54497.1| DNA mismatch repair protein MutS [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212994695|gb|EEB55338.1| DNA mismatch repair protein MutS [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 833 Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/850 (41%), Positives = 540/850 (63%), Gaps = 58/850 (6%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TP+M QY+ +K+ D L+FYR+ DFYELFFDDA+ A++ L I LTKRG G++IPMC Sbjct: 8 NTPVMEQYLNLKAQYTDHLLFYRLDDFYELFFDDAIKAAKLLNIVLTKRGNSNGQEIPMC 67 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H++ Y+ KLI +G ++AIC+Q+E+ EAKKRG KS+V+R+VVR+VTPGT+ ED L Sbjct: 68 GVPAHSSESYLHKLIDLGFKVAICDQLETADEAKKRGYKSIVKRDVVRVVTPGTIIEDSL 127 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 L +NYL ++ E+A++W+++STG F + ++ L SD++RI PRE++ SEK Sbjct: 128 LEDKSNNYLASIVEQNDEYAMSWLELSTGKFFHTLTSLKALDSDLLRISPRELLISEKFT 187 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 + +S+ + FF++S S + ++Y I + + G+FS+VE A A + Sbjct: 188 EDEKIRSILKNYKISITQHAQSFFEYSKSHRTLCEFYKIRELGSIGNFSKVEIMACGALL 247 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 Y++ TQ + P + +P+ Q+ + ID++AR NLE+ T G ++ SL+ ID+++T Sbjct: 248 EYVRVTQRGSIPRLEFPKTYKQQNFMLIDASARRNLELFSTQFGEKKGSLISVIDHTVTA 307 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 +GGRL + +ASPL S IN RL + FF+ N I++IL + PD+ RSLSRL +G Sbjct: 308 SGGRLLKQMLASPLACSKAINLRLSTAQFFVNNHDSRRKIREILSNIPDIERSLSRLILG 367 Query: 385 RGEPKDIAVIRDGIRSGINILNLFL----------KNDLPEELRGAVEKLKKLP------ 428 RG PKD+ +++ G+ + L+ FL K+++ ++ +K P Sbjct: 368 RGSPKDMNLLKIGLGKTLE-LSEFLSTLHNYCLSEKSEINSQMSFQCLTREKEPVQVISS 426 Query: 429 -----QSLEKTL-----------SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSK 472 ++ K+L S++L ++L + K +GGF+ ++ L E + + S Sbjct: 427 DESELSTIHKSLGNHKDLFELLNSAILDNNLSSVK-EGGFINPKYNSELSELSYILNNSN 485 Query: 473 RIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNL 532 +++ L+ Y + T I LKI HNN LGY++EV+++ + D FIHRQ+++N Sbjct: 486 KLVTKLRESYRDLTGIAALKILHNNILGYYVEVSANHKI-------TSDIFIHRQSLANS 538 Query: 533 TRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIAL 592 R+TT EL +LEN+I A ++A+ +E++ F L + + ++SE + A+ +A +DI A Sbjct: 539 MRYTTNELKELENKILTARDAAIGLEMKIFSELCSEVAKESEKIALAANALAKLDIRTAF 598 Query: 593 AILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKL 652 A LA + NY +PIID+S F + GRHP+VE K FIAN +L+ + Sbjct: 599 AELAVQNNYVKPIIDDSKEFNICSGRHPVVEVNDK------FIANSINLA--------GI 644 Query: 653 WLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRST 712 L+TGPNM GKSTFLRQNALI ++A MGS+VPA AH+G++DK+FSRVG+ DN+ +G ST Sbjct: 645 HLITGPNMAGKSTFLRQNALIAVLAHMGSFVPAESAHVGVIDKIFSRVGATDNITAGYST 704 Query: 713 FMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHF 772 FMVEMIETA+I+NQAT++S VILDEIGRGT DGLSIA A IE++H N+CR + ATH+ Sbjct: 705 FMVEMIETATIVNQATDRSLVILDEIGRGTGVYDGLSIAQAVIEHIHNVNKCRAIFATHY 764 Query: 773 HELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 HELT + + L+ +++ + +IFLH+VI GIAD SYGI V KLAG P++V++RA Sbjct: 765 HELTKVGEYLENVKCFCMKIKEWKGEVIFLHEVIEGIADESYGIHVAKLAGFPDSVLNRA 824 Query: 833 YDILKTFEKL 842 ++ FE+L Sbjct: 825 REV---FEEL 831 >gi|58584515|ref|YP_198088.1| DNA mismatch repair protein [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418831|gb|AAW70846.1| Mismatch repair ATPase, MutS family [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 819 Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/837 (42%), Positives = 529/837 (63%), Gaps = 54/837 (6%) Query: 33 IEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTAN 92 + +K+ D L+FYR+GDFYELFFDDA+ A++ L I LTKRG G+++PMCGVP H++ Sbjct: 1 MNLKAQYQDHLLFYRLGDFYELFFDDAIKAAKLLNIVLTKRGNSYGQEVPMCGVPAHSSE 60 Query: 93 HYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNY 152 Y+ KLI +G ++AIC+Q+E+ EAK+RG KS+V+R+VVR+VTPGT+ ED LL ++NY Sbjct: 61 SYLHKLIDLGFKVAICDQLETADEAKRRGYKSIVKRDVVRIVTPGTIVEDSLLEDKNNNY 120 Query: 153 LMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSL 212 L ++ + E+AI W+++STG F + +N L SD++RI P+E++ S++ + +S+ Sbjct: 121 LASIVKQNGEYAIGWLELSTGKFFHTLTNLKALDSDLLRISPKELLISDELAEDEKIRSI 180 Query: 213 FETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQM 272 + FF+++ S + ++Y + + GSFS+VE A A + Y+K TQ Sbjct: 181 LKNYKISITQHAQSFFEYNKSNRTLCEFYKVRELGVIGSFSKVEIMACGALLEYVKVTQR 240 Query: 273 VNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAE 332 + P + PE Q+ + +D++AR NLE+ T G ++ SL+ ID+++T +GGRL + Sbjct: 241 GSVPRLELPEPYKQQNFMLVDASARRNLELFLTQFGEKKGSLISVIDHTVTASGGRLLKQ 300 Query: 333 RIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIA 392 +ASPL S IN RL ++ FF+ N I++IL + PD+ RSLSRL + RG PKDI Sbjct: 301 MLASPLACSKAINLRLSTVEFFVNNYESRKRIREILSNIPDIERSLSRLMLERGSPKDIN 360 Query: 393 VIRDG-------------IRSGIN----------ILNLFLKNDLPEEL--RGAVEKLKKL 427 +++ G I SG N +L+ ++ L E+ + +L + Sbjct: 361 LLKVGLGKTLELSEFLYKIESGKNESLLQQYVIPVLDTGIQPALNAEITVKSDENELSTI 420 Query: 428 PQSL-------EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 +SL E S+ML ++L + K +GGF+ + L E + S ++I L+ Sbjct: 421 YKSLGNHKDLFELLNSAMLDNNLSSVK-EGGFINPKYNQELSELSYVLSNSNKLITRLRE 479 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 Y + T I LKI HNN LGY+IEV+++ + D FIHRQ+++N R+TT EL Sbjct: 480 SYRDLTGIAALKILHNNMLGYYIEVSANHKI-------TSDIFIHRQSLANSMRYTTNEL 532 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 +LEN+I A ++ + +E++ F L + I ++SE + + +A +DI A A LA + + Sbjct: 533 KELENKILTARDAVISLEIKIFGELCSEIAKESERIALTANALAKLDIRTAFAELAVQND 592 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 Y +PII++S F + +GRHP+VE K FIAN +LS + L+TGPNM Sbjct: 593 YTKPIINDSKEFNICNGRHPVVEVNDK------FIANSINLS--------GIHLITGPNM 638 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GKSTFLRQNALI I+A MGS+VPA AHIG++DK+FSRVG+ DN+ +G STFMVEMIET Sbjct: 639 AGKSTFLRQNALIAILAHMGSFVPADSAHIGVIDKIFSRVGATDNITAGYSTFMVEMIET 698 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 A+I+NQAT++S VILDEIGRGT DGLSIA A IE++H N+CR + ATH+HELT +SK Sbjct: 699 ATIVNQATDRSLVILDEIGRGTGVYDGLSIAQAVIEHIHNVNKCRAIFATHYHELTKVSK 758 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILK 837 LK +++ + E +IFLH+V+ G+AD SYGI V KLAG P+++++RA ++ K Sbjct: 759 YLKSVKCFCVRIKEWKEEVIFLHEVVEGVADESYGIHVAKLAGFPDSILNRASEVFK 815 >gi|87201305|ref|YP_498562.1| DNA mismatch repair protein [Novosphingobium aromaticivorans DSM 12444] gi|87136986|gb|ABD27728.1| DNA mismatch repair protein MutS [Novosphingobium aromaticivorans DSM 12444] Length = 858 Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/880 (41%), Positives = 524/880 (59%), Gaps = 34/880 (3%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY+ +K D L+FYRMGDF+ELFFDDA +A++ L I LT RG+H G IPMCGVP Sbjct: 1 MMAQYLALKDQAGDCLLFYRMGDFFELFFDDAKVAAQVLDIALTSRGEHGGAPIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGN-KSLVRRNVVRLVTPGTLTEDQLLS 146 VH+A Y+ +LIK G R+AI EQ+E+P EAKKRG K+LV R++VR VT GTLTE+ LL Sbjct: 61 VHSAEGYLARLIKAGCRVAIAEQVETPEEAKKRGGSKALVARDIVRFVTAGTLTEEALLE 120 Query: 147 PTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSH 206 P +N L AV +R IA DISTG ++ D++ + + R+ EI+ + Sbjct: 121 PRRANVLAAVCEVRGLIGIAACDISTGRMELEECAADQIGAALARLGASEIVAPDS---- 176 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISY 266 ++ V +PN F E+R+ + ++T+D FG F++ +AA ++Y Sbjct: 177 ------WDDRPFDCVPRPNRTFASEEGEARLKAVHGVSTLDGFGQFTRAMLSAAGGLVTY 230 Query: 267 IKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAG 326 + P + P + + + +D A R++LEIL + +G+R SL++ ID +TGAG Sbjct: 231 LDHVGRGALPLLLPPVAREAGTHMAMDEATRASLEILNSSTGTRRGSLVEAIDRCVTGAG 290 Query: 327 GRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRG 386 RL AE +++PLTD+ IN RL+ +++ +P+L I+ IL+S PDV R+L R+ GRG Sbjct: 291 ARLLAEDLSAPLTDARAINRRLEMVSWLHDDPLLRGDIRAILRSLPDVGRALGRVVAGRG 350 Query: 387 EPKDIAVIRDGIRSGINILNLF-LKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPT 445 P+D+ +RDG+ + L + D PE + + L +L + L PT Sbjct: 351 SPRDLGQLRDGLSEARRLHGLLHARADRPEPVHALLPSLAG-HGALCDLYARALVPAPPT 409 Query: 446 FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEV 505 + GG++ +G DA+LDE R + ++R IA+L+ KY ++T I LKI+HN LGYFIEV Sbjct: 410 ERSQGGYIAEGYDAALDELRRISGNARRAIAALEAKYRDDTGITALKIRHNGVLGYFIEV 469 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEIL 565 + A L + F HRQTM+ RF L L + +RI + AL E FE L Sbjct: 470 PAKHADRL---MAPDSGFTHRQTMAGAVRFNALALHEEASRIAESGGHALAAEEAHFEDL 526 Query: 566 SNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKT 625 + E++ + +A ID++ A A E + P + + + GRHP+VE Sbjct: 527 VGHAVRAKEAIAATAAALARIDVAAGQAERAAEGGWALPRVVDEPCLEISGGRHPVVEAA 586 Query: 626 LKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPA 685 L + + F+ANDC L P D+ LWL+ GPNMGGKSTFLRQNALIV++AQ G +VPA Sbjct: 587 LAAKGER-FVANDCALG-PQDR----LWLVGGPNMGGKSTFLRQNALIVLLAQAGGFVPA 640 Query: 686 SYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATL 745 A +G+VD+LFSRVG++DNLA GRSTFMVEM+ETA+IL+QAT++SFVILDE+GRGT+T Sbjct: 641 RSATVGLVDRLFSRVGASDNLARGRSTFMVEMVETAAILSQATDRSFVILDEVGRGTSTY 700 Query: 746 DGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKV 805 DGL++AWA E +H NRCR L ATH+HEL L++S ++ + ++ LH++ Sbjct: 701 DGLALAWAVAEAVHTINRCRCLFATHYHELARLAESCDALSLHHVRAREWKGDLVLLHEL 760 Query: 806 IPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK------DMRLYYPEIQT 859 G AD SYG+ V +LAG+P VI RA +L+ EK D+ L+ I+ Sbjct: 761 ADGPADKSYGLAVARLAGVPAPVIKRAKSVLEKLEKGRAATGGLAAGLDDLPLFAAAIEA 820 Query: 860 KESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 E K + + E++ L++D +SP AL LY +KA Sbjct: 821 AEEKVDALR------ERLNGLDIDALSPREALDLLYELKA 854 >gi|296284983|ref|ZP_06862981.1| DNA mismatch repair protein MutS [Citromicrobium bathyomarinum JL354] Length = 865 Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/890 (40%), Positives = 519/890 (58%), Gaps = 50/890 (5%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY +K + L+FYRMGDF+ELFFDDA +A+ L I LT RG+ G+ +PMCGVP Sbjct: 1 MMEQYHALKREAGECLLFYRMGDFFELFFDDAKIAAGVLDIALTSRGESGGEAVPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRG-------NKSLVRRNVVRLVTPGTLT 140 VH+A+ Y+ +LI+ GHR+AI EQ+E+P EA+ R +K LV R ++R VT GTLT Sbjct: 61 VHSADGYLARLIRAGHRVAIAEQVETPDEARARAKAEGKPSSKVLVARKIIRFVTAGTLT 120 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 ED LL P +N L A+ +R IA DISTG ++ D + + + R+ REI+ Sbjct: 121 EDTLLEPRRANQLAALCELRGRVGIAACDISTGRMELEECEADGVAAALSRLGAREIVAP 180 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 E + + A Y+++ G+ F R+ + + + T+D FG+FS+ AA Sbjct: 181 E-DWADAPYEAIARAPGD---------FASERGRKRLEELHGVATLDAFGTFSRAMLAAA 230 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 ++Y+ + P + P + + + ID A+R++LEI T +G R SLL T+D Sbjct: 231 GGLLAYLDHAGRGSMPFLLPPTVNETGAVMAIDEASRTSLEITATQNGERAGSLLGTVDR 290 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 +T AG RL AE +++PL T I RL + F ++PIL ++ L++ PD+ R+L+R Sbjct: 291 CVTSAGARLLAEDLSAPLARRTAIEARLALVRLFHEDPILRGDTREALRAIPDIARALAR 350 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL-PQ-----SLEKT 434 L RG P+D+ +RDG+ + ND LR L +L PQ +L Sbjct: 351 LVADRGSPRDLGQVRDGLAQARRL------NDALTRLRDHPPLLDELLPQLTGHGALVDE 404 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 LS L PT + +GGF+ G DA+LD R ++R IA+++ +Y ET I LKIK Sbjct: 405 LSRALVPSPPTERGNGGFIAAGYDAALDALRETSGNARRAIAAMEARYRSETGISALKIK 464 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 HN LGYFIEV + L + F HRQTM+N RF ++ L + +RI A A Sbjct: 465 HNGVLGYFIEVPARHGDAL---MGPDSGFTHRQTMANAVRFNSVHLHEEASRIAEAGGHA 521 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L E FE L ++ E + + +A ID++ ALA A E ++C P ID++ + Sbjct: 522 LAAEEAHFEALVETVVAARERIAQTADALARIDVAAALAERAAEGDWCAPQIDDAPCLEI 581 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 GRHP+VE L + + F+ NDC L+ + +LWL+ GPNMGGKSTFLR NALIV Sbjct: 582 VAGRHPVVEAALAKAGER-FVPNDCGLA-----ETDRLWLIGGPNMGGKSTFLRANALIV 635 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++AQ GSYVPA+ A IG+VD+LFSRVG++DNLA GRSTFMVEM+ETA+IL +A+ +SFVI Sbjct: 636 LLAQAGSYVPATSARIGLVDRLFSRVGASDNLARGRSTFMVEMVETAAILARASERSFVI 695 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDEIGRGT+T DGL++AWA E +HE NRCR L ATH+HEL L++S ++ + Sbjct: 696 LDEIGRGTSTYDGLALAWAVAEAIHENNRCRCLFATHYHELARLAESCDALSLHHVRARE 755 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ------K 848 ++ LH+V G AD SYG+ V KLAG+P V+ RA +L EK Sbjct: 756 WQGDLVLLHEVAEGPADRSYGLAVAKLAGVPPEVVDRASAVLAKLEKGREETGGLAAGLG 815 Query: 849 DMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 D+ L+ +Q ++ + + S D L L++D +SP AL LY +K Sbjct: 816 DLPLFSAAVQAEQQECD-SLRDTL-----SALDVDALSPREALDMLYQLK 859 >gi|269958935|ref|YP_003328724.1| DNA mismatch repair protein MutS [Anaplasma centrale str. Israel] gi|269848766|gb|ACZ49410.1| DNA mismatch repair protein MutS [Anaplasma centrale str. Israel] Length = 819 Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/812 (41%), Positives = 513/812 (63%), Gaps = 34/812 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP++RQY +K L+FYR+GDFYELFFDDA++ASR L I LTKRG PMCG Sbjct: 11 TPIIRQYKSLKDQYEGCLLFYRLGDFYELFFDDAVVASRALDIVLTKRGA----GTPMCG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H+A+ Y+ +L+K+GH++AICEQ+E+ EA+KRG+++LV+R+VVR+VTPGTL ED LL Sbjct: 67 IPTHSADSYLGRLVKLGHKVAICEQLETVEEARKRGHRALVKRDVVRIVTPGTLLEDGLL 126 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 +++NYL ++R+ + +AW+D+S GIF + +S + + S+I RI PRE++ S++ Sbjct: 127 EASENNYLACLSRVGDSYGVAWMDLSAGIFNVRSSRLENIDSEIQRIRPRELLISDRLKE 186 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAIS 265 E + + + FFD +E + Y + T+ G+F+ VE +A + + Sbjct: 187 QREIELILRRHRCAVTSHSESFFDVKKAEKVLCGIYGVNTLRGLGNFTDVEVSACGSLVE 246 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y++ TQ N P +GYP+ D +S + ID AA NLE+ T SG +E SL+ ID ++T Sbjct: 247 YVRTTQKNNLPKLGYPKVCDSKSFVLIDGAALRNLELFCTQSGEKEGSLVSVIDRTVTAI 306 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 G RL +A P + IN+R D++ FF+++ + I+ +++ PD+ R L+R+K+ + Sbjct: 307 GSRLLKRHLAFPSSCPHVINSRQDAVEFFVKSRNICESIRDVMRGIPDMERILTRIKLLK 366 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELR-----GAVEKLKKLPQSLEKTLSSMLS 440 P+D+ ++ + + + + L+ D P +R G EKL KL +S + Sbjct: 367 CSPRDVCMLGKALAKILRLQQIMLEVDNPMLVRIVGEFGEHEKLLKL-------ISGTIL 419 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 ++ RDGGF+ +A L + +S +++ L+ KY + T I +LKI +N+ LG Sbjct: 420 ENNAANARDGGFINPACNARLATVVRIESESDKLMQDLRDKYRKLTGIGSLKIAYNSVLG 479 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IE +S LK + FIHRQ++++ R TT EL +LE IT A + + +E + Sbjct: 480 YYIETPASHK--LKDTI-----FIHRQSLAHTMRHTTAELRELEETITAAKSEIMELEAQ 532 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F L I E+++S++ A+ +A +D+ I+LA LA E Y RPI+D+S F VK GRHP Sbjct: 533 IFRGLCLRISEEAQSVELAANAVAELDVLISLARLAAENKYVRPIVDDSREFAVKRGRHP 592 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE ++ FIAND +LS G++WL+TGPNM GKSTFLRQNALI I+A +G Sbjct: 593 VVETGVR------FIANDVNLS-----EDGRMWLITGPNMAGKSTFLRQNALIAIVAHIG 641 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA AHIG++DK+FSRVG++D+++ G STFMVEM ETA+ILNQAT++S VILDE+GR Sbjct: 642 SFVPAESAHIGVIDKIFSRVGASDSISLGYSTFMVEMAETAAILNQATDRSLVILDEVGR 701 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GT DG SIA A IE++H+ + R + ATH+HEL S LK +++ + ++ Sbjct: 702 GTGIHDGFSIALAVIEHIHDVTKSRAICATHYHELPKFSSYLKNVQCFYMKIEEWQGQVV 761 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 FLH+++ GI+ SYGI V +LAG P V+ RA Sbjct: 762 FLHELVAGISGKSYGIYVAELAGFPKNVLERA 793 >gi|222475013|ref|YP_002563428.1| DNA mismatch repair protein (mutS) [Anaplasma marginale str. Florida] gi|222419149|gb|ACM49172.1| DNA mismatch repair protein (mutS) [Anaplasma marginale str. Florida] Length = 819 Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/812 (41%), Positives = 513/812 (63%), Gaps = 34/812 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP++RQY +K L+FYR+GDFYELFFDDA++ASR L I LTKRG PMCG Sbjct: 11 TPIIRQYKSLKDQYEGCLLFYRLGDFYELFFDDAVVASRALDIVLTKRGA----GTPMCG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H+A+ Y+ +L+K+GH++AICEQ+E+ EA+KRG+++LV+R+VVR+VTPGTL ED LL Sbjct: 67 IPTHSADSYLGRLVKLGHKVAICEQLETVEEARKRGHRALVKRDVVRIVTPGTLLEDGLL 126 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 +++NYL ++R+ + +AW+D+S GIF + +S + + S+I RI PRE++ S++ Sbjct: 127 EASENNYLACLSRVGDSYGVAWMDLSAGIFNVRSSRLENIDSEIQRIRPRELLISDRLKE 186 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAIS 265 E + + + FFD +E + Y + T+ G+F+ VE +A + + Sbjct: 187 QREVELILRRHRCAVTSHSESFFDVKKAEKVLCGIYGVNTLRGLGNFTDVEVSACGSLVE 246 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y++ TQ N P +GYP+ D +S + ID AA NLE+ T SG +E +L+ ID ++T Sbjct: 247 YVRTTQKNNLPKLGYPKVCDSKSFVLIDGAALRNLELFCTQSGEKEGALVSVIDRTVTAI 306 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 G RL +A P + IN+R D++ FF+++ + I+ +++ PD+ R L+R+K+ + Sbjct: 307 GSRLLKRHLAFPSSCPHVINSRQDAVEFFVKSRNICESIRDVMRGIPDMERILTRIKLLK 366 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELR-----GAVEKLKKLPQSLEKTLSSMLS 440 P+D+ ++ + + + + L+ D P +R G EKL KL +S + Sbjct: 367 CSPRDVCMLGKALAKILRLQQIMLEVDNPMLVRIVGEFGEHEKLLKL-------ISGTIL 419 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 ++ RDGGF+ +A L + +S +++ L+ KY + T I +LKI +N+ LG Sbjct: 420 ENNAANARDGGFINPACNARLATVVRIESESDKLMQDLRDKYRKLTGIGSLKIAYNSVLG 479 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IE +S LK + FIHRQ++++ R TT EL +LE IT A + + +E + Sbjct: 480 YYIETPASHK--LKDTI-----FIHRQSLAHTMRHTTAELRELEETITAAKSEIMELEAQ 532 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F L I E+++S++ A+ +A +D+ I+LA LA E Y RPI+D+S F VK GRHP Sbjct: 533 IFRGLCLRISEEAQSVELAANAVAELDVLISLARLAVENKYVRPIVDDSREFAVKRGRHP 592 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE ++ FIAND +LS G++WL+TGPNM GKSTFLRQNALI I+A +G Sbjct: 593 VVETGVR------FIANDVNLS-----EDGRMWLITGPNMAGKSTFLRQNALIAILAHIG 641 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA AHIG++DK+FSRVG++D+++ G STFMVEM ETA+ILNQAT++S VILDE+GR Sbjct: 642 SFVPAESAHIGVIDKIFSRVGASDSISLGYSTFMVEMAETAAILNQATDRSLVILDEVGR 701 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GT DG SIA A IE++H+ + R + ATH+HEL S LK +++ + ++ Sbjct: 702 GTGIHDGFSIALAVIEHIHDVTKSRAICATHYHELPKFSSYLKNVQCFYMKIEEWQGQVV 761 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 FLH+++ GI+ SYGI V +LAG P V+ RA Sbjct: 762 FLHELVAGISGKSYGIYVAELAGFPKNVLERA 793 >gi|56416649|ref|YP_153723.1| DNA mismatch repair protein [Anaplasma marginale str. St. Maries] gi|56387881|gb|AAV86468.1| DNA mismatch repair protein [Anaplasma marginale str. St. Maries] Length = 819 Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/812 (41%), Positives = 513/812 (63%), Gaps = 34/812 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP++RQY +K L+FYR+GDFYELFFDDA++ASR L I LTKRG PMCG Sbjct: 11 TPIIRQYKSLKDQYEGCLLFYRLGDFYELFFDDAVVASRALDIVLTKRGA----GTPMCG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H+A+ Y+ +L+K+GH++AICEQ+E+ EA+KRG+++LV+R+VVR+VTPGTL ED LL Sbjct: 67 IPTHSADSYLGRLVKLGHKVAICEQLETVEEARKRGHRALVKRDVVRIVTPGTLLEDGLL 126 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 +++NYL ++R+ + +AW+D+S GIF + +S + + S+I RI PRE++ S++ Sbjct: 127 EASENNYLACLSRVGDSYGVAWMDLSAGIFNVRSSRLENIDSEIQRIRPRELLISDRLKE 186 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAIS 265 E + + + FFD +E + Y + T+ G+F+ VE +A + + Sbjct: 187 QREIELILRRHRCAVTSHSESFFDVKKAEKVLCGIYGVNTLRGLGNFTDVEVSACGSLVE 246 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y++ TQ N P +GYP+ D +S + ID AA NLE+ T SG +E +L+ ID ++T Sbjct: 247 YVRTTQKNNLPKLGYPKVCDSKSFVLIDGAALRNLELFCTQSGEKEGALVSVIDRTVTAI 306 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 G RL +A P + IN+R D++ FF+++ + I+ +++ PD+ R L+R+K+ + Sbjct: 307 GSRLLKRHLAFPSSCPHVINSRQDAVEFFVKSRNICESIRDVMRGIPDMERILTRIKLLK 366 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELR-----GAVEKLKKLPQSLEKTLSSMLS 440 P+D+ ++ + + + + L+ D P +R G EKL KL +S + Sbjct: 367 CSPRDVCMLGKALAKILRLQQIMLEVDNPMLVRIVGEFGEHEKLLKL-------ISGTIL 419 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 ++ RDGGF+ +A L + +S +++ L+ KY + T I +LKI +N+ LG Sbjct: 420 ENNAANARDGGFINPACNARLATVVRIESESDKLMQDLRDKYRKLTGIGSLKIAYNSVLG 479 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IE +S LK + FIHRQ++++ R TT EL +LE IT A + + +E + Sbjct: 480 YYIETPASHK--LKDTI-----FIHRQSLAHTMRHTTAELRELEETITAAKSEIMELEAQ 532 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F L I E+++S++ A+ +A +D+ I+LA LA E Y RPI+D+S F VK GRHP Sbjct: 533 IFRGLCLRISEEAQSVELAANAVAELDVLISLARLAVENKYVRPIVDDSREFAVKRGRHP 592 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE ++ FIAND +LS G++WL+TGPNM GKSTFLRQNALI I+A +G Sbjct: 593 VVETGVR------FIANDVNLS-----EDGRMWLITGPNMAGKSTFLRQNALIAILAHIG 641 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA AHIG++DK+FSRVG++D+++ G STFMVEM ETA+ILNQAT++S VILDE+GR Sbjct: 642 SFVPAESAHIGVIDKIFSRVGASDSISLGYSTFMVEMAETAAILNQATDRSLVILDEVGR 701 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GT DG SIA A IE++H+ + R + ATH+HEL S LK +++ + ++ Sbjct: 702 GTGIHDGFSIALAVIEHIHDVTKSRAICATHYHELPKFSSYLKNVQCFYMKIEEWQGQVV 761 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 FLH+++ GI+ SYGI V +LAG P V+ RA Sbjct: 762 FLHELVAGISGKSYGIYVAELAGFPKNVLERA 793 >gi|255004120|ref|ZP_05278921.1| DNA mismatch repair protein MutS [Anaplasma marginale str. Virginia] Length = 819 Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/812 (41%), Positives = 512/812 (63%), Gaps = 34/812 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP++RQY +K L+FYR+GDFYELFFDDA++ASR L I LTKRG PMCG Sbjct: 11 TPIIRQYKSLKDQYEGCLLFYRLGDFYELFFDDAVVASRALDIVLTKRGA----GTPMCG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H+A+ Y+ +L+K+GH++AICEQ+E+ EA+KRG+++LV+R+VVR+VTPGTL ED LL Sbjct: 67 IPTHSADSYLGRLVKLGHKVAICEQLETVEEARKRGHRALVKRDVVRIVTPGTLLEDGLL 126 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 +++NYL ++R+ + +AW+D+S GIF + +S + + S+I RI PRE++ S + Sbjct: 127 EASENNYLACLSRVGDSYGVAWMDLSAGIFNVRSSRLENIDSEIQRIRPRELLISYRLKE 186 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAIS 265 E + + + FFD +E + Y + T+ G+F+ VE +A + + Sbjct: 187 QREVELILRRHRCAVTSHSESFFDVKKAEKVLCGIYGVNTLRGLGNFTDVEVSACGSLVE 246 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y++ TQ N P +GYP+ D +S + ID AA NLE+ T SG +E +L+ ID ++T Sbjct: 247 YVRTTQKNNLPKLGYPKVCDSKSFVLIDGAALRNLELFCTQSGEKEGALVSVIDRTVTAI 306 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 G RL +A P + IN+R D++ FF+++ + I+ +++ PD+ R L+R+K+ + Sbjct: 307 GSRLLKRHLAFPSSCPHVINSRQDAVEFFVKSRNICESIRDVMRGIPDMERILTRIKLLK 366 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELR-----GAVEKLKKLPQSLEKTLSSMLS 440 P+D+ ++ + + + + L+ D P +R G EKL KL +S + Sbjct: 367 CSPRDVCMLGKALAKILRLQQIMLEVDNPMLVRIVGEFGEHEKLLKL-------ISGTIL 419 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 ++ RDGGF+ +A L + +S +++ L+ KY + T I +LKI +N+ LG Sbjct: 420 ENNAANARDGGFINPACNARLATVVRIESESDKLMQDLRDKYRKLTGIGSLKIAYNSVLG 479 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IE +S LK + FIHRQ++++ R TT EL +LE IT A + + +E + Sbjct: 480 YYIETPASHK--LKDTI-----FIHRQSLAHTMRHTTAELRELEETITAAKSEIMELEAQ 532 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F L I E+++S++ A+ +A +D+ I+LA LA E Y RPI+D+S F VK GRHP Sbjct: 533 IFRGLCLRISEEAQSVELAANAVAELDVLISLARLAVENKYVRPIVDDSREFAVKRGRHP 592 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE ++ FIAND +LS G++WL+TGPNM GKSTFLRQNALI I+A +G Sbjct: 593 VVETGVR------FIANDVNLS-----EDGRMWLITGPNMAGKSTFLRQNALIAILAHIG 641 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA AHIG++DK+FSRVG++D+++ G STFMVEM ETA+ILNQAT++S VILDE+GR Sbjct: 642 SFVPAESAHIGVIDKIFSRVGASDSISLGYSTFMVEMAETAAILNQATDRSLVILDEVGR 701 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GT DG SIA A IE++H+ + R + ATH+HEL S LK +++ + ++ Sbjct: 702 GTGIHDGFSIALAVIEHIHDVTKSRAICATHYHELPKFSSYLKNVQCFYMKIEEWQGQVV 761 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 FLH+++ GI+ SYGI V +LAG P V+ RA Sbjct: 762 FLHELVAGISGKSYGIYVAELAGFPKNVLERA 793 >gi|85709591|ref|ZP_01040656.1| DNA mismatch repair protein [Erythrobacter sp. NAP1] gi|85688301|gb|EAQ28305.1| DNA mismatch repair protein [Erythrobacter sp. NAP1] Length = 864 Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/885 (41%), Positives = 523/885 (59%), Gaps = 39/885 (4%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY+ +KS +SL+FYRMGDF+ELFFDDA +A+ L I LT RG+H G+ + MCGVP Sbjct: 1 MMEQYLALKSEAGESLLFYRMGDFFELFFDDAKVAANILDIALTSRGEHDGEPVAMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRG-------NKSLVRRNVVRLVTPGTLT 140 VH+A Y+ +LIK G R+AI EQ+E+P EAK R +K+LV R++VR VT GTLT Sbjct: 61 VHSAEGYLARLIKAGQRVAIAEQVETPDEAKARAKREGKPASKALVGRDIVRFVTAGTLT 120 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 E+ LL+P +N L+A+A +R +A DISTG + + L +++ R+ E++ Sbjct: 121 EEALLNPRAANLLVALADVRGTIGLAACDISTGTMTLEECSPAMLGAELARLGATEVVVP 180 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 E H ++ F F + + ++T+D FG FS+ AA Sbjct: 181 EG-WEHGPEEASF---------HARSAFSSDGGSDALQKVHGVSTLDGFGDFSRAMLAAA 230 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 I Y+ P + P D + + +D A R +LEIL + +G+R SL+ +D Sbjct: 231 GGLIGYLDHVGRGTLPLLLPPVLRDNSAGMVMDEATRGSLEILESQNGARTGSLVAALDR 290 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 TGAG RL A+ +++PL D I RL + F+ + PI ++ +L++ PD+ R+L R Sbjct: 291 CSTGAGSRLLAQDLSAPLLDHAAIEDRLSLVQFWRERPIERANLRDVLRALPDIGRALGR 350 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILN-LFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 L GRG P+D+ IRDG+ + L ++D P L V +L +L LS L Sbjct: 351 LVAGRGSPRDLGQIRDGLGEAWRLYYWLSREDDRPALLEALVPQLAG-HGALTDLLSRAL 409 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 PT + +GGF+ +G DASLDE R + ++R IA+++ +Y EET I +LKIKHN L Sbjct: 410 VPSPPTERSNGGFIAEGYDASLDELREVSGNARRAIAAMEARYREETGIASLKIKHNGVL 469 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GYFIEV S L + F HRQTM RF +L L + +RI+ A AL E Sbjct: 470 GYFIEVPSRHGDAL---MAPDSGFTHRQTMKGAVRFNSLSLHEEASRISEAGGRALAAEE 526 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 FE L A++E E++ + +A ID+S A A A E ++CRP I ++ GRH Sbjct: 527 AHFEDLVGAVVEAREAIAATAAALARIDVSAANAERASEGDWCRPEISEEYALDIEAGRH 586 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE L + + F+ANDC+L C + +LWL+ GPNMGGKSTFLRQNALIV+MAQ Sbjct: 587 PVVEAALAKVGDR-FVANDCNLGCDD-----RLWLIGGPNMGGKSTFLRQNALIVLMAQA 640 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 G +VPA+ A IG+VD+LFSRVG++DNLA GRSTFMVEM+ETA+IL+QAT +SFVILDE+G Sbjct: 641 GCFVPAASARIGLVDRLFSRVGASDNLARGRSTFMVEMVETAAILSQATQRSFVILDEVG 700 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGT+T DGL++AWA +E +H CR L ATH+HEL+ L++S + ++ + + Sbjct: 701 RGTSTYDGLALAWAVVEGVHSRIECRCLFATHYHELSRLAESCESLSLHHVRAREWKGDL 760 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ------KDMRLY 853 + LH++ G AD SYG+ V KLAG+P V++RA +L+ E+ ++ L+ Sbjct: 761 VLLHELAEGPADRSYGLAVAKLAGVPKDVVARAKAVLEKLERSREETGGLAAGLGELPLF 820 Query: 854 YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + ++ + D L K++ +LD +SP AL LY +K Sbjct: 821 AAAVPEPQA----TVEDAL-AAKLRDTDLDALSPRDALDLLYDLK 860 >gi|114327080|ref|YP_744237.1| DNA mismatch repair protein MutS [Granulibacter bethesdensis CGDNIH1] gi|122327938|sp|Q0BV38|MUTS_GRABC RecName: Full=DNA mismatch repair protein mutS gi|114315254|gb|ABI61314.1| DNA mismatch repair protein mutS [Granulibacter bethesdensis CGDNIH1] Length = 926 Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/888 (39%), Positives = 515/888 (57%), Gaps = 38/888 (4%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 +TP M Q+ +K+ +PD+L+F+RMGDFYELFF DA A+ L I LTKRG H G+ IPM Sbjct: 49 GATPAMAQWFVLKNQHPDALLFFRMGDFYELFFQDAENAAATLDIQLTKRGLHEGEPIPM 108 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVPVH A Y+ +LI+ G R+AI EQ+E+P K R K +RR+VVRLVTPGT+TE+ Sbjct: 109 CGVPVHAAEMYLSRLIRRGWRVAIVEQMENP---KNRAGKGPIRRDVVRLVTPGTITEET 165 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 LL N L+A+ + AW+DISTG+F+ + + L + + R+DP EI+ Sbjct: 166 LLDAGRPNLLLAITQSGNRLGAAWLDISTGLFETESLDESGLTALLGRLDPAEILCP--- 222 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 SL + + D + + +R+A+ Y+++ ++ FGSF+ E AA A Sbjct: 223 ------SSLHLEMWDARRGPEQPVSDPANARARLAEAYDVSHINVFGSFTDAEAMAAMQA 276 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 + Y++ QM P +G+P L +D++ R++LEI R G E++LL + ++T Sbjct: 277 LDYVRDAQMGALPRLGHPVPVGEAGRLAMDASTRASLEIDRARDGGTERTLLSAVQRTLT 336 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 AGGR+ A + +PLTD T I R D + ++ P L +++ L+ PD+ R+L R+ + Sbjct: 337 PAGGRMLAAWLGAPLTDRTVITARQDGWGWLLEQPTLSMRLRETLRGCPDMARALGRIAL 396 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 GRG P+D+A IRDG + L L+ LP L + LP L + L + L+D + Sbjct: 397 GRGTPRDLAAIRDGAHIAMEAAGL-LEGILPSAL-AELHAALHLPPDLPEMLEAALADPV 454 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P DGG + G D LD R LRD S+++IA+LQ +YA+ + +LKI+H+ LGY I Sbjct: 455 PARIEDGGVIASGFDGELDAERGLRDDSRKVIAALQTEYAQRYGVASLKIRHHAQLGYMI 514 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EV + + L+ E I RQ M+N RFT +L +L+ RIT A A E+ Sbjct: 515 EVPAVAVETLRTVPE----LILRQGMANGARFTHPDLSELDRRITEAAERARQREMIVIT 570 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L + + S+ ++ +A +D+ + A LA+ +CRP++ + ++ GRHP+VE Sbjct: 571 ALRQKVEAHAGSIAACAEALARLDVLQSAARLAESGTWCRPVMTDDQTLTIEAGRHPVVE 630 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 L + PF+ ND DLS S ++ LLTGPNM GKST+LRQNALIVI+AQ G V Sbjct: 631 AAL-EGGPTPFMPNDTDLSA-----SRRVMLLTGPNMAGKSTYLRQNALIVILAQAGLPV 684 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA AHIGIVD+LFSRVG++D+LA G+STFMVEM ETA+IL+QA +S V++DEIGRGT+ Sbjct: 685 PARAAHIGIVDRLFSRVGASDDLARGQSTFMVEMTETAAILHQAGPRSLVVVDEIGRGTS 744 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 TLDGL+IAWA +E LH R + ATHFHEL L L T++V + ++FLH Sbjct: 745 TLDGLAIAWAVLEALHSRIGARTIFATHFHELARLQGELPMLRPYTMKVQEWRGKVVFLH 804 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK------------LYHHNQKDMR 851 +V G S+G+ V KLAG+P + RA +L E+ L+ + + Sbjct: 805 EVAEGAGGRSWGVHVAKLAGVPAATVRRAGQLLTALEERSVGLTDNATLPLFAASHGNET 864 Query: 852 LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 P E+K + +E + + D+++P AL +Y K+ Sbjct: 865 ETEPAEGIHEAKPASLPPE--LIEALGQMEPDKLTPREALDLMYHFKS 910 >gi|255002993|ref|ZP_05277957.1| DNA mismatch repair protein MutS [Anaplasma marginale str. Puerto Rico] Length = 818 Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/812 (41%), Positives = 511/812 (62%), Gaps = 35/812 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP++RQY +K L+FYR+GDFYELFFDDA++ASR L I LTKRG PMCG Sbjct: 11 TPIIRQYKSLKDQYEGCLLFYRLGDFYELFFDDAVVASRALDIVLTKRGA----GTPMCG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H+A+ Y+ +L+K+GH++AICEQ+E+ EA+KRG+++LV+R+VVR+VTPGTL ED LL Sbjct: 67 IPTHSADSYLGRLVKLGHKVAICEQLETVEEARKRGHRALVKRDVVRIVTPGTLLEDGLL 126 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 +++NYL ++R+ + +AW+D+S GIF + +S + I + RI PRE++ S++ Sbjct: 127 EASENNYLACLSRVGDSYGVAWMDLSAGIFNVRSSRLEN-IDSVQRIRPRELLISDRLKE 185 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAIS 265 E + + + FFD +E + Y + T+ G+F+ VE +A + + Sbjct: 186 QREIELILRRHRCAVTSHSESFFDVKKAEKVLCGIYGVNTLRGLGNFTDVEVSACGSLVE 245 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y++ TQ N P +GYP+ D +S + ID AA NLE+ T SG +E +L+ ID ++T Sbjct: 246 YVRTTQKNNLPKLGYPKVCDSKSFVLIDGAALRNLELFCTQSGEKEGALVSVIDRTVTAI 305 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 G RL +A P + IN+R D++ FF+++ + I+ +++ PD+ R L+R+K+ + Sbjct: 306 GSRLLKRHLAFPSSCPHVINSRQDAVEFFVKSRNICESIRDVMRGIPDMERILTRIKLLK 365 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELR-----GAVEKLKKLPQSLEKTLSSMLS 440 P+D+ ++ + + + + L+ D P +R G EKL KL +S + Sbjct: 366 CSPRDVCMLGKALAKILRLQQIMLEVDNPMLVRIVGEFGEHEKLLKL-------ISGTIL 418 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 ++ RDGGF+ +A L + +S +++ L+ KY + T I +LKI +N+ LG Sbjct: 419 ENNAANARDGGFINPACNARLATVVRIESESDKLMQDLRDKYRKLTGIGSLKIAYNSVLG 478 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IE +S LK + FIHRQ++++ R TT EL +LE IT A + + +E + Sbjct: 479 YYIETPASHK--LKDTI-----FIHRQSLAHTMRHTTAELRELEETITAAKSEIMELEAQ 531 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F L I E+++S++ A+ +A +D+ I+LA LA E Y RPI+D+S F VK GRHP Sbjct: 532 IFRGLCLRISEEAQSVELAANAVAELDVLISLARLAVENKYVRPIVDDSREFAVKRGRHP 591 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE ++ FIAND +LS G++WL+TGPNM GKSTFLRQNALI I+A +G Sbjct: 592 VVETGVR------FIANDVNLS-----EDGRMWLITGPNMAGKSTFLRQNALIAILAHIG 640 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA AHIG++DK+FSRVG++D+++ G STFMVEM ETA+ILNQAT++S VILDE+GR Sbjct: 641 SFVPAESAHIGVIDKIFSRVGASDSISLGYSTFMVEMAETAAILNQATDRSLVILDEVGR 700 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GT DG SIA A IE++H+ + R + ATH+HEL S LK +++ + ++ Sbjct: 701 GTGIHDGFSIALAVIEHIHDVTKSRAICATHYHELPKFSSYLKNVQCFYMKIEEWQGQVV 760 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 FLH+++ GI+ SYGI V +LAG P V+ RA Sbjct: 761 FLHELVAGISGKSYGIYVAELAGFPKNVLERA 792 >gi|111073623|emb|CAL29486.1| DNA mismatch repair protein, MutS [Wolbachia endosymbiont of Onchocerca volvulus] Length = 812 Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/830 (41%), Positives = 517/830 (62%), Gaps = 57/830 (6%) Query: 43 LVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIG 102 ++FYR+GDFYELFFDDA+ A++ L I LTKRG G++IPMCGVP H + Y+ KLI +G Sbjct: 1 MLFYRLGDFYELFFDDAIKAAKLLNIVLTKRGNLCGQNIPMCGVPAHNSESYLHKLIDLG 60 Query: 103 HRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTE 162 ++AIC+Q+E+ EAK+RG+KS+V+R+VVR+VTPGT+ ED LL ++YL ++ E Sbjct: 61 FKVAICDQLETANEAKRRGHKSIVKRDVVRIVTPGTIIEDSLLEDKSNSYLASIVEENEE 120 Query: 163 WAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA 222 +AI W+++STG F + +N L +D++R+ P+E++ SEK + + +S+ ++ Sbjct: 121 YAIGWLELSTGKFFYTITNLKALDNDLLRVSPKELLISEKLIEDKKIRSILKSYKISITQ 180 Query: 223 QPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPE 282 FF+++ S + ++Y I + G+FS+VE A + Y++ TQ P + P+ Sbjct: 181 HAQSFFEYNKSYRTLCEFYKIRELGVIGNFSKVEVIACGVLLEYVRVTQKGCIPRLELPK 240 Query: 283 REDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDST 342 QS + ID++AR NLE+ T G R+ SL+ ID+++T +GGRL + +ASPL S Sbjct: 241 PYKQQSFMLIDASARRNLELFSTQFGERKGSLISVIDHTVTASGGRLLKQMLASPLACSK 300 Query: 343 KINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG----- 397 +N RL ++ FF+ + L +++IL S PD+ RSLSRL IGRG PKDI +++ G Sbjct: 301 AVNLRLSTVEFFVNHHKLRKKVREILSSIPDIERSLSRLVIGRGSPKDINLLKVGLGKTL 360 Query: 398 --------IRSGIN----------ILNLFLKNDLP------------EELRGAVEKLKKL 427 I SG N + N +K + +EL + L Sbjct: 361 ELSEFLCKIESGKNEFLLRRYIIPVSNAEIKTQISASSSRMTVKPGEDELSAIHKSLGNH 420 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 + E ++L +DL + K +GGF+ + L E + + ++I L+ Y + T Sbjct: 421 KELFELLNDAVLDNDLNSIK-EGGFINPQYNRELSELSYVLNNVNKLITKLRKSYCDLTG 479 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 I +LKI HNN LGY++EV++S + + FIHRQ+++N R+TT EL +LEN+I Sbjct: 480 IASLKIVHNNILGYYVEVSTSHKL-------TSNIFIHRQSLANSIRYTTSELKELENKI 532 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 A ++ + +E++ F L + I ++SE + A+ +A +D+ + A +A + NY +PIID Sbjct: 533 FAARDAIINLEIKIFGELCSKIAKESEKIALAANALAKLDVRTSFAEIAVQNNYVKPIID 592 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 +S F + +GRHP+VE K FIAN +L + L+TGPNM GKSTFL Sbjct: 593 DSKEFNIYNGRHPVVEIDGK------FIANSINLV--------GMHLITGPNMAGKSTFL 638 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQNALI I+A MGS+VPA AHIG+VDK+FSRVG+ DN+ +G STFM+EM+ETA+I+NQA Sbjct: 639 RQNALIAILAHMGSFVPADSAHIGVVDKIFSRVGATDNVTAGYSTFMIEMLETATIVNQA 698 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 T +S VILDEIGRGT DGLSIA A IE++H+ N+CR + ATH+HELT + K LK Sbjct: 699 TERSLVILDEIGRGTGVYDGLSIAQAVIEHIHDVNKCRAIFATHYHELTKVGKYLKNIKC 758 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILK 837 ++V + N ++FLH+V+ GIAD SYGI V +LAG P++V+ RA + K Sbjct: 759 FCVKVKEWNGKVVFLHEVVEGIADESYGIYVARLAGFPDSVLDRASAVFK 808 >gi|149185440|ref|ZP_01863756.1| DNA mismatch repair ATPase [Erythrobacter sp. SD-21] gi|148830660|gb|EDL49095.1| DNA mismatch repair ATPase [Erythrobacter sp. SD-21] Length = 874 Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/888 (40%), Positives = 521/888 (58%), Gaps = 40/888 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ +K ++L+FYRMGDF+ELFFDDA A++ L I LT RG+H G +PMCG Sbjct: 6 TPMMQQYLALKEEAGEALLFYRMGDFFELFFDDAKRAAQVLDIALTTRGEHGGAPVPMCG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRG-------NKSLVRRNVVRLVTPGT 138 VPVH+A Y+ +LIK G R+AI EQ E+P EAK+R +K+LV R++VR VT GT Sbjct: 66 VPVHSAEGYLARLIKGGCRVAIAEQTETPDEAKERTKREGKPVSKALVSRDIVRFVTAGT 125 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREII 198 LTE+ LL P +N L+AVA +R IA DISTG ++ +RL + + R+ E++ Sbjct: 126 LTEEALLEPRRANLLVAVAPVRDGVGIAACDISTGRLELEECGPERLDAALARLGASEVV 185 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + + F+T +++P F E+R+ + + T++ G FS+ Sbjct: 186 GPDDW-----EDAPFDT-----ISRPRHDFRSEDGEARLKALHGLATLEGLGDFSRPMLA 235 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AAA I+Y+ P + P + L +D+A RS+LEIL +G RE SL+ I Sbjct: 236 AAAGLIAYLDHAGRGKLPFLLPPVARGSGAHLAMDAATRSSLEILAAQNGGREGSLIACI 295 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D TGAG R AE +++PL D I RL S+ F ++P+L ++ +L+ +PD+ R+L Sbjct: 296 DRCATGAGARQLAEDLSAPLADLAAIEMRLASVQHFHEDPLLRADLRAVLRQAPDIGRAL 355 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLF-LKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 RL GRG P+D+ IR G+ + ++ DLP L ++ L +L L+ Sbjct: 356 GRLVAGRGSPRDLGQIRYGLSEARRVRDMLSASTDLPPLLVRTIDALGG-HAALVDHLAR 414 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 L PT + GGF+ G D +LD R +++ IA+L+ KY EET +LKIKHN Sbjct: 415 ALVPSPPTERSQGGFIASGYDHALDALRETSGNARKAIAALEAKYREETATPSLKIKHNK 474 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 LGYFIEV + L + F HRQTM+ RF ++ L + +RI A AL Sbjct: 475 VLGYFIEVPAKHGDKL---MAQDSGFTHRQTMAGAVRFNSVGLHEEASRIAEAGAHALAA 531 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E FE L + E + + +A ID+S ALA A E ++ RP I + V G Sbjct: 532 EESHFEELVGEVTAAREGIAATAAALARIDVSAALAERAVEGDWARPAILHEPCLEVTGG 591 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ L + + F+ANDC L + +LWL+ GPNMGGKSTFLRQNALI+++A Sbjct: 592 RHPVVEQALAKTGER-FVANDCSLGSDD-----RLWLIGGPNMGGKSTFLRQNALIMLLA 645 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q GS+VPA+ A IG+ D+LFSRVG++DNLA GRSTFMVEM+ETA+IL+QAT++SFVILDE Sbjct: 646 QAGSFVPATAARIGLADRLFSRVGASDNLARGRSTFMVEMVETAAILSQATDRSFVILDE 705 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 +GRGT+T DG+++AWA +E +HE +CR L ATH+HEL+ L+ + ++ + Sbjct: 706 VGRGTSTYDGMALAWAVVEAVHEQLKCRCLFATHYHELSRLADTCDALSLHHVRAREWKG 765 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ------KDMR 851 ++ LH++ G AD SYG+ V KLAG+P VI RA +L EK D+ Sbjct: 766 DLVLLHELAKGAADRSYGLSVAKLAGVPPPVIKRAKAVLDKLEKGRAETGGLAAGLGDLP 825 Query: 852 LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 L+ Q +E + + + E + L++D +SP AL LY +KA Sbjct: 826 LFAVTAQAEEEQCDALR------EALDALDVDSLSPREALDELYRLKA 867 >gi|88607128|ref|YP_505434.1| DNA mismatch repair protein [Anaplasma phagocytophilum HZ] gi|123494801|sp|Q2GJL7|MUTS_ANAPZ RecName: Full=DNA mismatch repair protein mutS gi|88598191|gb|ABD43661.1| DNA mismatch repair protein MutS [Anaplasma phagocytophilum HZ] Length = 820 Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/829 (41%), Positives = 508/829 (61%), Gaps = 34/829 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP++RQY +K + L+ YR+GDFYELFF+DA++AS+ L I LTKRG D PMCG Sbjct: 8 TPVLRQYRALKEQYGECLLLYRLGDFYELFFEDAVIASKTLNIVLTKRGT----DTPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H++ YI +L+K G+++A+CEQIE+ EA+KR ++LVRR V R+VTPGTL ED LL Sbjct: 64 VPYHSSESYIGRLVKSGYKVAVCEQIETAEEARKRSVRALVRREVTRIVTPGTLVEDSLL 123 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 ++NYL ++ I + +AW+++STG+F + S + L S+I R+ P E++ S+K L Sbjct: 124 DAKENNYLACISNIGERYGVAWMELSTGLFHVRASKLEDLDSEIQRLGPSELLISDK-LK 182 Query: 206 HAEYKSLFETLGNVAVAQPN-VFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 + L A+ N FFD +E + Y +TTV G F +VE +A + + Sbjct: 183 EQQSMELVLKRHRCAITSHNESFFDSKRAEKVLCGVYGVTTVQGLGDFEEVEVSACGSLL 242 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 Y++ TQ + P + YP+ D S + ID A NLE+ T SG ++ SL+ TID+++T Sbjct: 243 EYVRMTQRGSLPKLSYPKVRDSNSFVLIDGPALRNLELFSTQSGEKKGSLISTIDHTVTA 302 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 G R+ +A P+ IN R D++ FF+ N L I+ ++ PD+ R L+R+K Sbjct: 303 MGSRMLKRYLAFPVACHNVINGRQDAVEFFVSNRSLCEVIRGVINGFPDIERILTRVKFS 362 Query: 385 RGEPKDIAVIRDGIRSGINILNLF-LKNDLPEELRGAVEK-LKKLP--QSLEKTLSSMLS 440 + PKDI ++ G + +F L + + K L L + L K +S ++ Sbjct: 363 KCSPKDIHLL------GRALSKIFELSRIISRSTHAIISKILVSLGDHRDLLKLISEVML 416 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 ++ T +DGGF+ G + L E +++ S +I L+ KY T I +LKI NN LG Sbjct: 417 ENNATITKDGGFINPGCNERLAELARIQNDSGVLIQRLRDKYRALTGISSLKILSNNLLG 476 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IEV+SS S + F+ RQ+++N TR+TT EL +LE RI +A + + +E + Sbjct: 477 YYIEVSSSYKV-------SDESFVRRQSLANSTRYTTAELKELEERIVSAQSESADLEAQ 529 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F+ L + I ++ + + A++ +A +D+ LA +A E NY RPI+D+S F + GRHP Sbjct: 530 IFKGLCSRIADECQDIGLAAEAVAELDVLTTLAEVAVENNYVRPIVDDSKQFKIVRGRHP 589 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE FIANDCDLS N + L+TGPNM GKSTFLRQNALI ++A +G Sbjct: 590 VVE------VGTDFIANDCDLSEGN-----SMSLITGPNMAGKSTFLRQNALIAVLAHIG 638 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA +AHIG++DK+FSRVG++DN+A G STFMVEM+ETA+ILNQAT++S VILDEIGR Sbjct: 639 SFVPAEHAHIGVIDKIFSRVGASDNIALGHSTFMVEMVETAAILNQATSKSLVILDEIGR 698 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTA DGLSIA A IE++H+ + R + ATH+HEL LS + L++ + ++ Sbjct: 699 GTAINDGLSIALAAIEHIHDVTKSRAICATHYHELPKLSSHFENIRFFCLRIEEWKGEVV 758 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 FLH++IPGI+ SYGI V LAG P + RA + F++ H+ D Sbjct: 759 FLHELIPGISSRSYGIHVAGLAGFPKGALERAKFFMSKFDEAEHYRSID 807 >gi|294013487|ref|YP_003546947.1| DNA mismatch repair protein MutS [Sphingobium japonicum UT26S] gi|292676817|dbj|BAI98335.1| DNA mismatch repair protein MutS [Sphingobium japonicum UT26S] Length = 883 Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/900 (40%), Positives = 527/900 (58%), Gaps = 49/900 (5%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 ++ + + +TPMM QY+ +K+ D L+FYRMGDF+ELFF+DA A+ L I LT RG+H Sbjct: 5 IDTSTQQATPMMAQYLALKAEAQDCLLFYRMGDFFELFFEDAKAAAATLDIALTSRGEHG 64 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G IPMCGVPVH+A Y+ +LIK GHR+AI EQ E+P EAK RG+KSLV R +VR VT G Sbjct: 65 GAPIPMCGVPVHSAESYLARLIKAGHRVAIAEQTETPAEAKARGSKSLVARAIVRYVTAG 124 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFKISTSNHDRLISDIMRID 193 TLTE+ LL N L A+A++ E + +A DISTG F+ T L +++ R+ Sbjct: 125 TLTEETLLDSRRDNMLAALAQVGGEEADEYGLAAADISTGRFETLTLRAADLPAELARLR 184 Query: 194 PREIIFSEK---EL--SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDT 248 P EI+ + EL SH ++ F + S +E+ + + + T+D Sbjct: 185 PSEIVLPDGLDLELPDSHPFDRAAFSS---------------SRAEAALKRIFGVATLDG 229 Query: 249 FGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG 308 FG FS+ E A + Y+ P + P R+ + + ID+A R +LEI T+SG Sbjct: 230 FGQFSRAELAAMGGLLGYLDHAGKGTLPFLAPPVRKTSGAHVAIDAATRESLEITATMSG 289 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKIL 368 +R SLL +D ++TGAG RL A+ +++PL D I RL + F + +L + ++ L Sbjct: 290 TRAGSLLGAVDRTVTGAGARLLAQDLSAPLMDQPAIEARLGLVQLFHDDAMLRDQLRVTL 349 Query: 369 KSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP 428 ++ PD+ R+L RL +GRG P+D+ +RDG+ + + L + Sbjct: 350 RALPDIGRALGRLAMGRGSPRDLGQLRDGLGEARLLRERLGRLPDQPLLLAQLLPSLDGH 409 Query: 429 QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 +L +LS L PT +GG++ DG DA+LDE R L +R IA+L+ KY E+T I Sbjct: 410 GALVDSLSRALVPSPPTETANGGYIADGYDAALDELRRLAGDGRRAIAALEAKYREQTGI 469 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 +LKI+HN LGY +EV + +A L ++ F HRQT++ + RF +++L + +R+ Sbjct: 470 ASLKIRHNGVLGYHVEVPARAADQL---MQPDSGFTHRQTLAGVVRFNSVDLHEQASRVA 526 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII-- 606 A AL+ E E L + + + + A+ +A +D++ ALA A E + RP Sbjct: 527 QAGAHALVAEAAHLEELIESTLARKAEIARAADALARLDVAAALAERAAEGGWQRPHFLP 586 Query: 607 --DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 + GRHP+VE L++ +PF+ANDC L S +LWL+TGPNMGGKS Sbjct: 587 EDGEGPCLEITGGRHPVVEDALRRDG-QPFVANDCRLGA-----SDRLWLVTGPNMGGKS 640 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 TFLRQNA+IVI+AQ G+YVPA A + +VD+LFSRVG++DNLA GRSTFMVEM+ETA+IL Sbjct: 641 TFLRQNAIIVILAQAGAYVPAQSATLTLVDRLFSRVGASDNLAKGRSTFMVEMVETAAIL 700 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR 784 QAT +SFVILDE+GRGT+T DGL++AWA +E +HE NRCR L ATH+HELT L+++L Sbjct: 701 AQATERSFVILDEVGRGTSTYDGLALAWAVVEAVHEVNRCRCLFATHYHELTRLAETLSS 760 Query: 785 FHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYH 844 ++ + ++ LH+V G AD SYG+ V +LAGLP V+ RA D+L E Sbjct: 761 LSLHHVRAREWKGDLVLLHEVAEGPADRSYGLAVARLAGLPPAVLKRAKDVLSRLEAGKA 820 Query: 845 HNQK------DMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 D+ L+ + E K + + + ++ D +SP AL LY +K Sbjct: 821 KTGGIAAGLDDLPLFAAAVAQVEEKADPLRA------ALDGIDADALSPREALDQLYRLK 874 >gi|148555672|ref|YP_001263254.1| DNA mismatch repair protein MutS [Sphingomonas wittichii RW1] gi|189083195|sp|A5VA00|MUTS_SPHWW RecName: Full=DNA mismatch repair protein mutS gi|148500862|gb|ABQ69116.1| DNA mismatch repair protein MutS [Sphingomonas wittichii RW1] Length = 904 Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/915 (41%), Positives = 535/915 (58%), Gaps = 52/915 (5%) Query: 6 SSPQKLYSEQI------DLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDA 59 SPQ S ++ D+ + TPMM QY+ +K+ D L+FYRMGDF+ELFFDDA Sbjct: 12 GSPQVAISVRMAQTAKKDMAPPASAPTPMMAQYLALKAAAEDCLLFYRMGDFFELFFDDA 71 Query: 60 LLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKK 119 AS CL I LT RG+H G+ IPMCGVP H+A Y+ +LIK GHR+AI +Q ESP EAKK Sbjct: 72 KTASACLDIALTARGEHDGQPIPMCGVPAHSAEGYLARLIKAGHRVAIADQTESPAEAKK 131 Query: 120 R-GNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVA--------RIRTEWAIAWIDI 170 R G+K+LV R +VR+VT GTLTE+ LL +N+L+AVA RI IA DI Sbjct: 132 RAGSKALVGRAIVRVVTAGTLTEEALLDSRAANWLVAVAGAGQGADRRI----GIAAADI 187 Query: 171 STGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDH 230 STG F+I+ L +++ R+D EI+ E FE AVA P F+ Sbjct: 188 STGRFEIAGLIPSALDAELARLDAAEIVVPED----------FEEPPAGAVAWPREHFES 237 Query: 231 SISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTL 290 E R+ + T+D FG+F++ E AA A I+Y+++ + P + P R + + Sbjct: 238 VRGEERLKRLLGVATLDGFGAFTRAELAAAGALIAYLERAGQGSLPFLQPPRRRVVADHM 297 Query: 291 FIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDS 350 ID+A R +LEI + +G R+ SLL +D ++TGAG RL +++PLTD I RLD Sbjct: 298 MIDAATRESLEITLSQAGVRKGSLLDAVDRTVTGAGARLLGADLSAPLTDVGAIEARLDL 357 Query: 351 INFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLK 410 + F + L ++ L++ PDV R+L RL RG P+D+ +RDG+ + L + Sbjct: 358 VALFEGDGALRERLRGALRALPDVGRALGRLVARRGSPRDLGQLRDGLDQARLLHELLGR 417 Query: 411 N-DLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRD 469 +P L G + +L + L L L P GG++ +G D +LD R Sbjct: 418 AAPMPALLAGLLPQLVGHDE-LVDLLRRALVATPPIDAAQGGYIAEGYDPALDALRGQGG 476 Query: 470 QSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTM 529 + ++ IA+L+ +Y ET I +LKIKHN LGY IEV + A L + + F HRQT+ Sbjct: 477 EGRKAIAALEARYRAETGIPSLKIKHNGVLGYHIEVQAKHADPL---MTADSGFTHRQTL 533 Query: 530 SNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDIS 589 + + RF +L + R+ + AL E E L A + ++ + + +A +D++ Sbjct: 534 AGVVRFNAPDLHEQAMRVGQSGEHALAAEAAHLEELMAAALGRTAEIAATADALARLDVA 593 Query: 590 IALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNS 649 ALA A E + RP + + F V GRHP+VE + Q ++ F+ANDC LS + Sbjct: 594 AALAERAAEGGWTRPHFEPHSCFDVIGGRHPVVEAAVAAQGAR-FVANDCRLS-----DQ 647 Query: 650 GKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASG 709 +LWL+TGPNMGGKSTFLRQNA I I+AQ GS VPA+ A +GIVD+LFSRVG++DNLA G Sbjct: 648 ERLWLVTGPNMGGKSTFLRQNAAIAILAQAGSPVPATSARLGIVDRLFSRVGASDNLARG 707 Query: 710 RSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLA 769 RSTFMVEM+ETA+IL QAT +SFVILDE+GRGT+T DGL+IAWA +E +H+ NRCR L A Sbjct: 708 RSTFMVEMVETAAILAQATERSFVILDEVGRGTSTYDGLAIAWAVVEAVHDINRCRCLFA 767 Query: 770 THFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVI 829 TH+HELT L++ L ++ + ++ LH++ G AD SYGI V KLAGL V+ Sbjct: 768 THYHELTRLAERLDALSLHHVRAREWKGELVLLHELADGPADRSYGIAVAKLAGLSPPVL 827 Query: 830 SRAYDILKTFEKLYHHNQK------DMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLD 883 +RA D+LK E D+ L+ Q +E+ + +++ I+ +++D Sbjct: 828 ARARDVLKKLEAGRAATGGLAAGLDDLPLFAAAAQVEEAAPDPLRHE------IETIDVD 881 Query: 884 EMSPLTALKTLYAVK 898 +SP AL LY +K Sbjct: 882 SLSPREALDILYRLK 896 >gi|296115101|ref|ZP_06833742.1| DNA mismatch repair protein MutS [Gluconacetobacter hansenii ATCC 23769] gi|295978202|gb|EFG84939.1| DNA mismatch repair protein MutS [Gluconacetobacter hansenii ATCC 23769] Length = 882 Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/885 (41%), Positives = 527/885 (59%), Gaps = 38/885 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 + +TP M Q+ +K+ +P++L+F+RMGDFYELFF DA A+ L I+LT RG H G I Sbjct: 15 EGATPAMAQWFALKAEHPEALLFFRMGDFYELFFADAEAAAAALDISLTARGTHAGMPIA 74 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVPVH A Y+ +LI+ G R+++ EQ E+P + + K +RR VVRLVTPGTLTED Sbjct: 75 MCGVPVHAAPAYLARLIRRGFRVSVAEQTEAPRKGRA-AAKGPLRREVVRLVTPGTLTED 133 Query: 143 QLLSPTDSNYLMAVA--RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 +LL N L + R +AWIDISTG+F+ + D L + R+DP EI+ + Sbjct: 134 ELLEAGRQNLLACIVAERGTGRLGVAWIDISTGLFETANLPADGLQDLLGRLDPAEILCA 193 Query: 201 EKELSHAEYKSLFETLGNVAV--AQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + LG+ A A P + + + + R+A+ + ++D FG+FS E Sbjct: 194 DDI-----------ALGDFAARRAPPVIPMNAAAARRRMAETFGAASLDAFGTFSDGEAM 242 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 A A AI YI+++Q P + P D L +D A R++L++LRT G +L + Sbjct: 243 AGATAIDYIRRSQAGQLPRLSRPHPHDSSEVLGLDPATRASLDLLRTRDGDNTHTLFAAV 302 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D ++T AG RL E IA+PLTD+ +I TR D+ + + P + ++ L+ +PDV R+L Sbjct: 303 DRTVTAAGSRLLGEWIAAPLTDARRITTRQDAWAWLLDKPQVRQSLRDALRPAPDVARAL 362 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN-DLPEELRGAVEKLKKLPQSLEKTLSS 437 RL +GRG+P+D A IR + + ++ + ++ P + A L K + LE L+ Sbjct: 363 GRLSLGRGQPRDAAAIRAALSTARHVARIVRESPQAPSLVTRATAHLDKATE-LEALLAR 421 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 LSD LP DGG + G D LD R LRD S+RIIA+LQ +YA+ I NLKI+H+ Sbjct: 422 ALSDTLPARLEDGGVIATGYDGELDGERELRDGSRRIIAALQQEYADAFGISNLKIRHHA 481 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 LGY IEV S++++ LK ++ I RQ ++ RF+T L+ L+ RI A A Sbjct: 482 QLGYVIEVPSAASARLK----DREDLILRQGTASAARFSTDRLVSLDQRIIEAAERAAAR 537 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E F L I+++ +L + + +A++DI + A LA +CR I + T F + D Sbjct: 538 ERTLFAELVRTILDEP-ALPDIASALAVLDIIQSCAELAGGGTWCRAAISDDTTFDLTDC 596 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE L + + F N CDLS D+ ++ LLTGPNM GKSTFLRQ AL VI+A Sbjct: 597 RHPVVEAALPRDAR--FTPNSCDLS--PDR---RVMLLTGPNMAGKSTFLRQTALAVIVA 649 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q G V A A IGIVD+LFSRVG+AD+LA GRSTFMVEM ETA+ILNQA +S V++DE Sbjct: 650 QAGLPVCAKAARIGIVDRLFSRVGAADDLARGRSTFMVEMTETAAILNQAGPRSMVVVDE 709 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGTATLDGL+IAWA +E +H T RCR + ATHFHEL++L++SL R T+ V + Sbjct: 710 IGRGTATLDGLAIAWAVLEAMHSTLRCRAIFATHFHELSELAESLPRLSPHTMSVREWKG 769 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 +IF H+V+PG A S+G+ V +LAG+P V+ RA +L EK H + L+ I Sbjct: 770 EVIFQHEVVPGTARRSWGVHVARLAGVPEPVVRRAGRLLAGLEKERHAAAPALPLFE-RI 828 Query: 858 QT----KESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 T E+ L + +E + L+ DE++P AL LY +K Sbjct: 829 DTPPPVAEATPALPEK---VIEMVIGLDPDELTPRAALDALYRLK 870 >gi|58040303|ref|YP_192267.1| DNA mismatch repair protein MutS [Gluconobacter oxydans 621H] gi|58002717|gb|AAW61611.1| DNA mismatch repair protein MutS [Gluconobacter oxydans 621H] Length = 883 Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/892 (41%), Positives = 522/892 (58%), Gaps = 39/892 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 ++++P M Q+ ++K PD+L+F+RMGDFYELFF DA A+ L I LT RG H G+ IP Sbjct: 7 ENASPAMAQWFDLKHQEPDALLFFRMGDFYELFFSDAQAAAMALDIALTARGTHQGEPIP 66 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVPV A Y+ +LI+ G R+A+ EQ ++P + ++ K + R +VR+VTPGTLTED Sbjct: 67 MCGVPVAAAPAYLSRLIRRGFRVAVAEQTQAPPKKGEKPQKGPLARAIVRVVTPGTLTED 126 Query: 143 QLLSPTDSNYLMAVARIRTEWA----IAWIDISTGIFKISTSNHDRLISDIMRIDPREII 198 +LL +N L+A+AR + A AWIDISTG F+ ++ L + R+D EI+ Sbjct: 127 ELLEAGRANLLLAIARSPEKRAKMIGAAWIDISTGAFETASVPESALPELMARLDAAEIL 186 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 SE +L +Y S L VAV P + + + +A Y + +D G F + Sbjct: 187 -SEPDLIPPDYAS---RLAPVAV-PPTL----DSARTLVARAYGVAQIDALGDFPPEQAI 237 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 A A++Y++++Q P + P + L ID A R++L+ILRT G + SLL + Sbjct: 238 ACTMALNYVQRSQAGALPRLSRPIPQGTDGVLGIDPATRASLDILRTRDGETKHSLLGAV 297 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 + T AG RL A+ +ASPLTD+T I R + + P L + IL+ +PD R+L Sbjct: 298 TRTATAAGSRLLAQWLASPLTDATAITDRQNGWLWLQSIPGLSGALGDILRRTPDPARAL 357 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLF---LKNDLPEELRGAVEKLKKLPQSLEKTL 435 R+ GRG+P+D+A IRD + + +I LF + P +R L +L + L Sbjct: 358 GRISAGRGQPRDLAAIRDTLIAANDITALFQPACDPNTPTLIRTLTAGLYGRADTLLEQL 417 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + +++ LP DG F+ G +A LD R LRD+S+RIIA++Q + +E+ + NLKIKH Sbjct: 418 QAAVAETLPARIEDGDFIAPGYNAELDRYRGLRDESRRIIAAMQGELSEKFGVSNLKIKH 477 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 + LGY IEV S++ + L+ + E RQ ++L RF+T EL L+ I A + A Sbjct: 478 HAQLGYVIEVPSAAGTKLRDNPE----LSFRQGTASLARFSTEELAGLDRAILEAADKAS 533 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E F L I+ Q+ +LD ++ +A+ D+ + +LA+ ++CRP + +ST F + Sbjct: 534 ALERRIFAELCARIL-QTPALDEVAEFLALADVLRSCGLLAEGGSWCRPTVTDSTEFNLV 592 Query: 616 DGRHPIVEKTLKQQSSKP--FIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 RHP+VE L + S FI NDC L P + + LLTGPNM GKSTFLRQ AL Sbjct: 593 ACRHPVVEAALAESGSADARFIPNDCAL--PPEHRA---MLLTGPNMAGKSTFLRQTALA 647 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 VI+AQ G VPA A IG+VD+LFSRVG AD+LA GRSTFMVEM ETA+ILNQA +S V Sbjct: 648 VILAQAGLPVPAKSAQIGVVDRLFSRVGGADDLARGRSTFMVEMTETAAILNQAGPKSLV 707 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGTATLDGLSIAWAT+E LH R + ATHFHEL L++ L R T+ V Sbjct: 708 VVDEIGRGTATLDGLSIAWATLEALHTQLGSRTIFATHFHELGALTEFLPRLAPYTMAVK 767 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 + +IF H+V PG A S+G+ V KLAG+P +V++RA +L FE+ Q D R Sbjct: 768 EWRGEVIFQHEVRPGAARKSWGLHVAKLAGIPQSVVNRASRLLTQFER----EQADSRSS 823 Query: 854 YPEIQT-------KESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P + + + I+ LN D++SP AL LY +K Sbjct: 824 LPLFEAVAEPEIPPAPEPAAPPIPTPLEDAIRALNPDDLSPRDALDALYELK 875 >gi|209542482|ref|YP_002274711.1| DNA mismatch repair protein MutS [Gluconacetobacter diazotrophicus PAl 5] gi|209530159|gb|ACI50096.1| DNA mismatch repair protein MutS [Gluconacetobacter diazotrophicus PAl 5] Length = 873 Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/889 (41%), Positives = 527/889 (59%), Gaps = 32/889 (3%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 +TP M Q+ +K+ +P++L+F+RMGDFYE+FF DA A+ L I LT RG H IPM Sbjct: 8 GATPAMAQWFSLKAEHPEALLFFRMGDFYEMFFSDAEAAAGALDIALTARGTHGDIPIPM 67 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVPV A+ Y+ +LI+ G R+A+ EQ E P + K G K + R VVRLVTPGTLTED+ Sbjct: 68 CGVPVGAASSYLARLIRRGFRVAVAEQTEPPRKPGKGGPKGPLARAVVRLVTPGTLTEDE 127 Query: 144 LLSPTDSNYLMAVA----RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 LL N L+AVA R W +AWIDISTG F+ ++ + L+ + R+DP EI Sbjct: 128 LLEAGRQNLLLAVASRGGRGTRGWGVAWIDISTGTFETASVPAEGLMDLLGRLDPAEI-- 185 Query: 200 SEKELSHAEYKSLFETLGNVAV--AQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 L+ AE LG+ A A + + R+A+ +++ ++D FG+FS E Sbjct: 186 ----LAAAEID-----LGDFAARRAPATIPPGPEAARRRVAETFHVASLDAFGTFSDEEA 236 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 A A A+ Y++++Q P + P+ + L +D A R++L++LRT G E +LL + Sbjct: 237 VAGAMALDYVRRSQAGQMPRLSRPQAHENGGVLGLDPATRASLDLLRTRDGGTEHTLLAS 296 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 + ++T G RL AE IA+PLT I R D ++ I+ + +++ L+ +PD+ R+ Sbjct: 297 VGRTVTAPGSRLLAEWIAAPLTRDAAIAARQDGWSWLIEEGGVRAALRQGLRGTPDIARA 356 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFL--KNDLPEELRGAVEKLKKLPQSLEKTL 435 L+RL +GRG P+D A IRDG+ I + P L A+ L + LE L Sbjct: 357 LARLSLGRGLPRDAAAIRDGLAIARRIAQALTDGRTAPPALLADAMRHLGEA-TDLEARL 415 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 L++DLP DGG + G DA LD R+LRD S+R+IA LQ YA++ + +LKI+H Sbjct: 416 KQALAEDLPARVEDGGVIAAGFDAELDAERALRDDSRRVIAGLQNDYAQKFGLASLKIRH 475 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 + LGY IEV +++A L++ + I RQ ++ RF+T EL+ L+ RI A A Sbjct: 476 HAQLGYVIEVPAATAPRLRE----RTDLILRQGTASAARFSTEELVSLDRRIAEAAERAA 531 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 E F L I+++ A +A++D+ + A LA +CRP + + F + Sbjct: 532 TRERRIFAALVREILDEPAPPVIAG-ALAVLDVLQSCADLAAGGMWCRPEVTDDDAFTLT 590 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 RHP+VE L + S+ F NDC L + + ++ LLTGPNM GKSTFLRQ AL VI Sbjct: 591 ACRHPVVEAALPR--SERFTPNDCVL-----EPAQRVMLLTGPNMAGKSTFLRQTALAVI 643 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +AQ G VPA A IG+VD+LFSRVG++D+LA GRSTFMVEM ETA+ILNQA +S V++ Sbjct: 644 LAQAGLPVPAKAARIGVVDRLFSRVGASDDLARGRSTFMVEMTETAAILNQAGPRSLVVV 703 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGTATLDGL+IAW+ +E +H T RCR + ATHFHEL +L++SL R T+ V + Sbjct: 704 DEIGRGTATLDGLAIAWSVLEAMHSTLRCRSIFATHFHELAELAESLPRLSPHTMSVREW 763 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 +IF H+VIPG A S+G+ V +LAG+P V+ RA +L EK + + L+ P Sbjct: 764 KGQVIFQHEVIPGSARRSWGVHVARLAGVPEPVVRRAARLLAGLEKERAVGARPLPLFAP 823 Query: 856 EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTLEK 904 T ++ + ++ L+ DE++P TAL +YA+K LE+ Sbjct: 824 ADSTPPAEEPDPGVPEPVRRMLEQLDPDELTPRTALDMVYAIKKLMLEE 872 >gi|94496583|ref|ZP_01303159.1| DNA mismatch repair protein MutS [Sphingomonas sp. SKA58] gi|94423943|gb|EAT08968.1| DNA mismatch repair protein MutS [Sphingomonas sp. SKA58] Length = 914 Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/904 (39%), Positives = 527/904 (58%), Gaps = 57/904 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY+ +K+ D L+FYRMGDF+ELFFDDA LA+ L I LT RG H G PMCG Sbjct: 40 TPMMAQYLALKAQAQDCLLFYRMGDFFELFFDDAKLAAATLDIALTSRGDHEGAPTPMCG 99 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH+A Y+ +LIK GHR+AI EQ E+P +AK RG+K+LV R++VR VT GTLTE+ LL Sbjct: 100 VPVHSAESYLARLIKGGHRVAIAEQTETPAQAKARGSKALVARDIVRYVTAGTLTEETLL 159 Query: 146 SPTDSNYLMAVARI----RTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 N L+A+A++ E IA DISTG F+ T L +++ R+ P E + ++ Sbjct: 160 DARRDNMLVALAQVGGETSGEVGIAAADISTGRFETLTCPIVDLPAELARLRPSETVLAD 219 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 + + G A+A F S +++ + + + T+D FG F + E A Sbjct: 220 G--------ATMDVPG--AIAFDRAAFSSSRAQAALKRLFGVATLDGFGQFGRAELAAMG 269 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 ++Y+ P + P R+ + + ID+A R +LEI+ T +G+R SLL ID + Sbjct: 270 GLVAYLDHAGKGTLPFLAPPMRKASGAHIAIDAATRESLEIVATTAGTRAGSLLAAIDRT 329 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +TGAG RL A+ I++PL D + I RL + F + L + ++ L++ PD+ R+L R+ Sbjct: 330 VTGAGARLLAQDISAPLMDLSAIEARLGLVQMFHDDAGLRDQVRGALRALPDIGRALGRV 389 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 +GRG P+D+ +RDG+ + + L + + L+ L Sbjct: 390 AVGRGSPRDLGQLRDGLGEARMLRERLGRLPDQPPLLQQLLPALDGHGQMVDALARALIP 449 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 PT +GG++ DG DA+LDE R + +R IA+L+ KY E+T I LKI+HN LGY Sbjct: 450 APPTETANGGYIADGYDAALDELRRIAGDGRRAIAALEAKYREQTGIGALKIRHNGVLGY 509 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +EV + +A L + F HRQT++ + RF +++L + R+ A AL+ E Sbjct: 510 HVEVPARAADAL---MAPDSGFTHRQTLAGVVRFNSVDLHEEAGRVAQAGAHALVAEAAH 566 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG---- 617 E L+NA++++ + A+ +A +D++ ALA A E + RP +F+ DG Sbjct: 567 LEDLTNAVLDRKADIARAADALARLDVAAALAERAAEGGWQRP------HFVAADGVGGH 620 Query: 618 ----------RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 RHP+VE L+++ +PF+ANDC L S +LWL+TGPNMGGKSTFL Sbjct: 621 GGQCLDIVGGRHPVVEDALRKEG-QPFVANDCRLG-----ESDRLWLVTGPNMGGKSTFL 674 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQNALIVI+AQ G YVPA A + +VD+LFSRVG++DNLA GRSTFMVEM+ETA+IL QA Sbjct: 675 RQNALIVILAQAGGYVPAQSATMTLVDRLFSRVGASDNLAKGRSTFMVEMVETAAILAQA 734 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 + +SFVILDE+GRGT+T DGL++AWA +E +HE N+CR L ATH+HELT L+++L Sbjct: 735 SERSFVILDEVGRGTSTYDGLALAWAVVEAVHEVNQCRCLFATHYHELTRLAETLPSLSL 794 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ 847 ++ + ++ LH++ G AD SYG+ V +LAGLP V+ RA D+L E Sbjct: 795 HHVRAREWKGDLVLLHELAQGPADRSYGLAVARLAGLPPAVLKRAKDVLARLEAGKAKTG 854 Query: 848 K------DMRLY-YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAW 900 D+ L+ Q E + L E I+ ++ D +SP AL +Y +K Sbjct: 855 GIAAGLDDLPLFAAAAAQEDEPVDPLR-------EAIEAIDADALSPREALDHIYRLKQL 907 Query: 901 TLEK 904 +++ Sbjct: 908 VVQE 911 >gi|162147863|ref|YP_001602324.1| DNA mismatch repair protein MutS [Gluconacetobacter diazotrophicus PAl 5] gi|161786440|emb|CAP56022.1| DNA mismatch repair protein mutS [Gluconacetobacter diazotrophicus PAl 5] Length = 873 Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/889 (41%), Positives = 527/889 (59%), Gaps = 32/889 (3%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 +TP M Q+ +K+ +P++L+F+RMGDFYE+FF DA A+ L I LT RG H IPM Sbjct: 8 GATPAMAQWFSLKAEHPEALLFFRMGDFYEMFFSDAEAAAGALDIALTARGTHGDIPIPM 67 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVPV A+ Y+ +LI+ G R+A+ EQ E P + K G K + R VVRLVTPGTLTED+ Sbjct: 68 CGVPVGAASSYLARLIRRGFRVAVAEQTEPPRKPGKGGPKGPLARAVVRLVTPGTLTEDE 127 Query: 144 LLSPTDSNYLMAVA----RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 LL N L+AVA R W +AWIDISTG F+ ++ + L+ + R+DP EI Sbjct: 128 LLEAGRQNLLLAVASRGGRGTRGWGVAWIDISTGTFETASVPAEGLMDLLGRLDPAEI-- 185 Query: 200 SEKELSHAEYKSLFETLGNVAV--AQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 L+ AE LG+ A A + + R+A+ +++ ++D FG+FS E Sbjct: 186 ----LAAAEID-----LGDFAARRAPATIPPGPEAARRRVAETFHVASLDAFGTFSDEEA 236 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 A A A+ Y++++Q P + P+ + L +D A R++L++LRT G E +LL + Sbjct: 237 VAGAMALDYVRRSQAGQMPRLSRPQAHENGGVLGLDPATRASLDLLRTRDGGTEHTLLAS 296 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 + ++T G RL AE IA+PLT I R D ++ I+ + +++ L+ +PD+ R+ Sbjct: 297 VGRTVTAPGSRLLAEWIAAPLTRDAAIAARQDGWSWLIEEGGVRAALRQGLRGTPDIARA 356 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFL--KNDLPEELRGAVEKLKKLPQSLEKTL 435 L+RL +GRG P+D A IRDG+ I + P L A+ L + LE L Sbjct: 357 LARLSLGRGLPRDAAAIRDGLAIARRIAQALTDGRTAPPALLADAMRHLGEA-TDLETRL 415 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 L++DLP DGG + G DA LD R+LRD S+R+IA LQ YA++ + +LKI+H Sbjct: 416 KQALAEDLPARVEDGGVIAAGFDAELDAERALRDDSRRVIAGLQNDYAQKFGLASLKIRH 475 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 + LGY IEV +++A L++ + I RQ ++ RF+T EL+ L+ RI A A Sbjct: 476 HAQLGYVIEVPAATAPRLRE----RTDLILRQGTASAARFSTEELVSLDRRIAEAAERAA 531 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 E F L I+++ A +A++D+ + A LA +CRP + + F + Sbjct: 532 TRERRIFAALVREILDEPAPPVIAG-ALAVLDVLQSCADLAAGGMWCRPEVTDDDAFTLT 590 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 RHP+VE L + S+ F NDC L + + ++ LLTGPNM GKSTFLRQ AL VI Sbjct: 591 ACRHPVVEAALPR--SERFTPNDCVL-----EPAQRVMLLTGPNMAGKSTFLRQTALAVI 643 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +AQ G VPA A IG+VD+LFSRVG++D+LA GRSTFMVEM ETA+ILNQA +S V++ Sbjct: 644 LAQAGLPVPAKAARIGVVDRLFSRVGASDDLARGRSTFMVEMTETAAILNQAGPRSLVVV 703 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGTATLDGL+IAW+ +E +H T RCR + ATHFHEL +L++SL R T+ V + Sbjct: 704 DEIGRGTATLDGLAIAWSVLEAMHSTLRCRSIFATHFHELAELAESLPRLSPHTMSVREW 763 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 +IF H+VIPG A S+G+ V +LAG+P V+ RA +L EK + + L+ P Sbjct: 764 KGQVIFQHEVIPGSARRSWGVHVARLAGVPEPVVRRAARLLAGLEKERAVGARPLPLFAP 823 Query: 856 EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTLEK 904 T ++ + ++ L+ DE++P TAL +YA+K LE+ Sbjct: 824 ADSTPPAEEPDPGVPEPVRRMLEQLDPDELTPRTALDMVYAIKKLMLEE 872 >gi|103488268|ref|YP_617829.1| DNA mismatch repair protein MutS [Sphingopyxis alaskensis RB2256] gi|98978345|gb|ABF54496.1| DNA mismatch repair protein MutS [Sphingopyxis alaskensis RB2256] Length = 864 Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/878 (39%), Positives = 518/878 (58%), Gaps = 27/878 (3%) Query: 29 MRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPV 88 M QY +K D L+FYRMGDF+ELFFDDA A+ L I LT RG+H G+ +PMCGVPV Sbjct: 1 MAQYWALKEKAGDCLLFYRMGDFFELFFDDAKAAAATLDIALTSRGEHDGQPVPMCGVPV 60 Query: 89 HTANHYIQKLIKIGHRIAICEQIESPLEAKKRG-NKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A Y+ +LI+ GHR+AI EQ+E+P EAK RG +K+LV R++VR VT GTLTE+ LL Sbjct: 61 HAAESYLARLIRAGHRVAIAEQVETPAEAKARGGSKALVARDIVRFVTAGTLTEESLLEG 120 Query: 148 TDSNYLMAVARI--RTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 +N L A+A + E AIA DISTG F++ T D + +++ R+ P E++ SE Sbjct: 121 RSANRLAALAEVGGEREVAIAAADISTGRFEVVTVRPDAVDAELARLAPSELLLSESA-- 178 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAIS 265 + L + V +P F + ++ R+ ++ + T+D FG FS+ E A A ++ Sbjct: 179 ----EDLPISSARQVVRRPASDFASTAAQKRLEAFFGVRTLDGFGQFSRSEIAAMGALLA 234 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y+ + P R + ID+A R +LE++RT++G+RE SLL TID ++T A Sbjct: 235 YLDHVGTGGPTFLQPPVRHLASDRMAIDAATRESLELVRTMAGTREGSLLGTIDRTVTAA 294 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 G RL A+ +ASPLTD I RLD ++ Q+ + ++ L++ PD R+L RL R Sbjct: 295 GARLLADDLASPLTDRAAILDRLDLVDALAQDALWRGDLRAALRALPDAGRALGRLVARR 354 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPT 445 G P+D+A +RD + ++ + L + +L L+ L + P Sbjct: 355 GGPRDLAQLRDALGGARSLRERLARRADLPPLLARLLPGLDGHGALVDELTRALVETPPV 414 Query: 446 FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEV 505 GG++ +G D +LD R ++ IA+L+ +Y + T I +LKI+HN LGY +EV Sbjct: 415 DAAQGGYIAEGYDHALDALRETARDGRKAIAALEAEYRDRTGIASLKIRHNGVLGYHVEV 474 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEIL 565 + A L + F HRQT++ + RF + +L D R+T A A+ E E L Sbjct: 475 PAKHADAL---MAEGSGFTHRQTLAGVVRFNSADLHDAAMRVTQAGVHAVAAEAAHLEAL 531 Query: 566 SNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKT 625 + A + + E++ + V+A +D++ ALA A N+CRP + + V GRHP+VE Sbjct: 532 TAAAVARREAIAASCDVLARLDVAAALADHAMSHNWCRPDLADVPCLEVVGGRHPVVEAA 591 Query: 626 LKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPA 685 L + + F+ ND LS + +LWL+TGPNMGGKSTFLRQNA+I+++AQ G +VPA Sbjct: 592 LAKAGER-FVPNDVSLS-----ETDRLWLVTGPNMGGKSTFLRQNAVIIVLAQAGGFVPA 645 Query: 686 SYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATL 745 + A +G+VD+LFSRVG++DNLA GRSTFMVEM+ETA+IL QAT SFVILDE+GRGT+T Sbjct: 646 ASARLGLVDRLFSRVGASDNLARGRSTFMVEMVETAAILAQATPDSFVILDEVGRGTSTY 705 Query: 746 DGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKV 805 DGL++AW+ +E +HE N+CR L ATH+HELT L+++L ++ + ++ LH+V Sbjct: 706 DGLALAWSVVEAVHEVNKCRCLFATHYHELTRLAETLDALSLHHVRAREWQGDLVLLHEV 765 Query: 806 IPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY-----YPEIQTK 860 G AD SYG+ V +LAG+P V+ RA +L KL +K L P Sbjct: 766 AAGPADRSYGLAVARLAGVPPAVVKRAETVLA---KLEAGREKTGGLAAGLDDLPLFAAT 822 Query: 861 ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ ++ D L + + ++ D ++P AL LY +K Sbjct: 823 LAEAPVAARDALR-DALAAIDPDALTPRDALDVLYRLK 859 >gi|307297057|ref|ZP_07576873.1| DNA mismatch repair protein MutS [Sphingobium chlorophenolicum L-1] gi|306877583|gb|EFN08811.1| DNA mismatch repair protein MutS [Sphingobium chlorophenolicum L-1] Length = 869 Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/886 (40%), Positives = 512/886 (57%), Gaps = 41/886 (4%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY+ +K+ D L+FYRMGDF+ELFF+DA A+ L I LT RG+H G IPMCGVP Sbjct: 1 MMAQYLALKAEAQDCLLFYRMGDFFELFFEDAKAAAATLDIALTSRGEHGGAPIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 VH+A Y+ +LIK GHR+AI EQ E+P +AK RG+KSLV R +VR VT GTLTE+ LL Sbjct: 61 VHSAESYLARLIKAGHRVAIAEQTETPAQAKARGSKSLVARAIVRYVTAGTLTEETLLDS 120 Query: 148 TDSNYLMAVARI----RTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK- 202 N L+A+A++ E+ +A DISTG F+ T L +++ R+ P EI+ + Sbjct: 121 RRDNMLVALAQVGGGEAGEYGLAAADISTGRFETLTLRAADLPAELARLRPSEIVLPDGL 180 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 EL + T F +E+ + + + T+D FG FS+ E A Sbjct: 181 ELDLPDSHPFDRTA-----------FSSGRAEAALKRIFGVATLDGFGQFSRAELAAMGG 229 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 + Y+ P + P + + ID+A R +LEI T+SG+R SLL +D ++ Sbjct: 230 LLGYLDHAGKGTLPFLAPPSAKTSGGHMAIDAATRESLEITATMSGTRAGSLLGAVDRTV 289 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 TGAG RL A+ +++PL D I RL + F + +L + ++ L++ PD+ R+L RL Sbjct: 290 TGAGARLLAQDLSAPLMDQAAIEARLGLVQLFHDDSMLRDQLRVALRALPDIGRALGRLA 349 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 +GRG P+D+ +RDG+ + + L + +L +LS L Sbjct: 350 MGRGSPRDLGQLRDGLGEARLLRERLGRLPDQPLLLAQLLPSLDGHGALVDSLSRSLVPS 409 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 PT +GG++ DG D +LDE R L +R IA+L+ KY E+T I +LKI+HN LGY Sbjct: 410 PPTETANGGYIADGYDPALDELRRLAGDGRRAIAALEAKYREQTGIASLKIRHNGVLGYH 469 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 +EV + +A L ++ F HRQT++ + RF +++L + R+ A AL+ E Sbjct: 470 VEVPARAADPL---MQPDSGFTHRQTLAGVVRFNSIDLHEQAGRVAQAGAHALVAEAAHL 526 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII----DNSTNFIVKDGR 618 E L A + + + A+ +A +D++ ALA A E + RP + GR Sbjct: 527 EELIEATLARKAEIARAADALARLDVAAALAERAAEGGWQRPHFLPEDGEGPCLDITGGR 586 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE L++ +PF+ANDC L S +LWL+TGPNMGGKSTFLRQNA+IVI+AQ Sbjct: 587 HPVVEDALRRDG-QPFVANDCRLGA-----SDRLWLVTGPNMGGKSTFLRQNAIIVILAQ 640 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 G+YVPA A + +VD+LFSRVG++DNLA GRSTFMVEM+ETA+IL QAT +SFVILDE+ Sbjct: 641 AGAYVPAQSATLTLVDRLFSRVGASDNLAKGRSTFMVEMVETAAILAQATERSFVILDEV 700 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGL++AWA +E +HE NRCR L ATH+HELT L+++L ++ + Sbjct: 701 GRGTSTYDGLALAWAVVEAVHEVNRCRCLFATHYHELTRLAETLSSLSLHHVRAREWKGD 760 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK------DMRL 852 ++ LH+V G AD SYG+ V +LAGLP V+ RA D+L E D+ L Sbjct: 761 LVLLHEVAEGPADRSYGLAVARLAGLPPAVLKRAKDVLSRLEAGKARTGGIAAGLDDLPL 820 Query: 853 YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + E K + + + ++ D +SP AL LY +K Sbjct: 821 FAAATAQVEEKVDPLRT------ALDGIDADALSPREALDQLYRLK 860 >gi|332188673|ref|ZP_08390388.1| DNA mismatch repair protein MutS [Sphingomonas sp. S17] gi|332011290|gb|EGI53380.1| DNA mismatch repair protein MutS [Sphingomonas sp. S17] Length = 856 Score = 636 bits (1641), Expect = e-180, Method: Compositional matrix adjust. Identities = 368/883 (41%), Positives = 522/883 (59%), Gaps = 35/883 (3%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY+ +K+ D L+FYRMGDF+ELFFDDA +AS L I LT RG+H G+ IPMCGVP Sbjct: 1 MMAQYLTLKAEAEDCLLFYRMGDFFELFFDDARIASGVLDIALTSRGEHGGEKIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGN-KSLVRRNVVRLVTPGTLTEDQLLS 146 VH A Y+Q+LIK GHR+AI EQ E+P EAK RG K+LV R +VR+VT GTLTE+ LL Sbjct: 61 VHAATAYLQRLIKAGHRVAIAEQTETPAEAKARGGSKALVSRGIVRVVTAGTLTEEALLD 120 Query: 147 PTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSH 206 N+ +A+ A+A DISTG F + D L +++ R+ E++ +E Sbjct: 121 AKSDNWCVAIGEAGGAVALAAADISTGRFVVIDVKADALGAELARLAAAEVVAAENAAHA 180 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISY 266 +L +P+ FD E R+ Y + T+D FG FS+ +AA ++Y Sbjct: 181 EAATTL----------RPSATFDSGSGEDRLKRLYGVATLDGFGQFSRAGLSAAGGLVAY 230 Query: 267 IKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAG 326 + T P + P + ID+A R +LE+ +T SG R+ SLL +D ++TGAG Sbjct: 231 LDHTAKGALPFLRPPVLCQAAGAMAIDAATRESLELTQTASGQRKGSLLDAVDRTVTGAG 290 Query: 327 GRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRG 386 GR A I +PL D I RLD + F + L + L++ PD+ R++ R+ GRG Sbjct: 291 GRALAGDIGAPLMDRDAIEARLDLVQHFHDDAALRERSRAALRALPDIGRAIGRIAAGRG 350 Query: 387 EPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTF 446 P+D+ +RDG+ G L+ L D P LR +L+ + ++ L L P Sbjct: 351 SPRDLGQLRDGL-DGAWTLSEQLA-DGPPLLRETTPRLRGHGELID-LLRRALVPSPPIE 407 Query: 447 KRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVT 506 +GG++ G D +LD+ R +R IA+L+ ++ ++T I LKI+HN LGY +EV Sbjct: 408 ASEGGYIAAGYDVALDDLRDAGAGGRRAIAALEAEFRQKTGITALKIRHNGVLGYHVEVP 467 Query: 507 SSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILS 566 + SA L K F HRQT++ + RF T EL ++ +++ A AL E E L+ Sbjct: 468 ARSADALMK---PDSGFTHRQTLAGVVRFNTPELHEVASKVAQAGAHALAAEAAHLEELT 524 Query: 567 NAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTL 626 A + ES+ + +A +D++I LA A E + RP + + F V GRHP+VE + Sbjct: 525 AAALASRESIAATADALARLDVAIGLAERAVEGGWVRPELVDHACFEVTGGRHPVVEAAV 584 Query: 627 KQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPAS 686 + S + F+ANDC LS + +LWL+TGPNMGGKSTFLRQNALI ++AQ GSYVPA+ Sbjct: 585 AR-SGERFVANDCQLS-----ETSRLWLVTGPNMGGKSTFLRQNALIAVLAQAGSYVPAT 638 Query: 687 YAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLD 746 +A IG+VD+LFSRVG++DNLA GRSTFMVEM+ETA+IL QAT +SFVILDE+GRGT+T D Sbjct: 639 HAKIGLVDRLFSRVGASDNLARGRSTFMVEMVETAAILAQATPRSFVILDEVGRGTSTYD 698 Query: 747 GLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVI 806 GL+IAWA +E +HE NRCR L ATH+HELT L++ + ++ + ++ LH+V Sbjct: 699 GLAIAWAVVEAIHEDNRCRCLFATHYHELTRLAERCEALSLHHVRAREWKGELVLLHEVS 758 Query: 807 PGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK------DMRLYYPEIQTK 860 G AD SYG+ V +LAG+P T ++RA +L E D+ L+ Q + Sbjct: 759 EGPADRSYGLAVARLAGMPPTTVARAKAVLAKLEAGRAKTGGLAAGLDDLPLFAAAAQIE 818 Query: 861 ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTLE 903 E + + + + VEK L++D +SP AL LY +KA E Sbjct: 819 EEQCDAIRAE---VEK---LDVDALSPREALDALYKLKALARE 855 >gi|58698275|ref|ZP_00373193.1| DNA mismatch repair protein MutS [Wolbachia endosymbiont of Drosophila ananassae] gi|58535199|gb|EAL59280.1| DNA mismatch repair protein MutS [Wolbachia endosymbiont of Drosophila ananassae] Length = 789 Score = 632 bits (1630), Expect = e-179, Method: Compositional matrix adjust. Identities = 340/812 (41%), Positives = 508/812 (62%), Gaps = 61/812 (7%) Query: 66 LGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSL 125 L I LTKRG G+DIPMCGVP H++ Y+ KLI +G ++AIC+Q+E+ EAKKRG KS+ Sbjct: 2 LNIVLTKRGNSCGQDIPMCGVPAHSSESYLHKLIDLGFKVAICDQLETADEAKKRGYKSI 61 Query: 126 VRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRL 185 V+R+VVR+VTPGT+ ED LL +NYL ++ E+AI+W+++STG F + ++ L Sbjct: 62 VKRDVVRVVTPGTIIEDSLLEDKSNNYLASIVEQNDEYAISWLELSTGKFFHTLTSLKAL 121 Query: 186 ISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITT 245 SD++RI PRE++ SEK + +S+ + FF++S S + ++Y I Sbjct: 122 DSDLLRISPRELLISEKFTEDEKIRSVLKNYKISITQHAQSFFEYSKSHRTLCEFYKIRE 181 Query: 246 VDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT 305 + + G+FS+VE A A + Y++ TQ + P + +P+ Q+ + ID++AR NLE+ T Sbjct: 182 LGSIGNFSKVEIMACGALLEYVRVTQRGSIPRLEFPKTYKQQNFMLIDASARRNLELFST 241 Query: 306 LSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQ 365 G ++ SL+ ID+++T +GGRL + +ASPL S IN RL + FF+ N I+ Sbjct: 242 QFGEKKGSLISVIDHTVTASGGRLLKQMLASPLACSKAINLRLSTAQFFVNNHEPRRKIR 301 Query: 366 KILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFL----------KNDLPE 415 +IL + PD+ RSLSRL +GRG PKD+ +++ G+ + L+ FL K+++ Sbjct: 302 EILSNIPDIERSLSRLILGRGSPKDMNLLKIGLGKTLE-LSEFLSTLHNYCLSEKSEINS 360 Query: 416 ELRGAVEKLKKLPQSLEKTLSS-------------------------MLSDDLPTFKRDG 450 ++ +K P S + +SS +L ++L + K +G Sbjct: 361 QMSFQCLTKEKEPVSTTQVISSDESELSTIHKSLGNHKDLFELLNSAILDNNLSSVK-EG 419 Query: 451 GFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSA 510 GF+ ++ L E + + S +++ L+ Y + T I LKI HNN LGY++EV+++ Sbjct: 420 GFIHSKYNSELSELSYILNNSNKLVTKLRESYRDLTGIAALKILHNNILGYYVEVSANHK 479 Query: 511 SVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAII 570 + D FIHRQ+++N R+TT EL +LEN+I A ++A+ +E++ F L + + Sbjct: 480 I-------TSDIFIHRQSLANSMRYTTNELKELENKILTARDAAIGLEMKIFSELCSEVA 532 Query: 571 EQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQS 630 ++SE + A+ +A +DI A A LA + NY +PIID+S F + GRHP+VE K Sbjct: 533 KESEKIALAANALAKLDIRTAFAELAVQNNYVKPIIDDSKEFNICSGRHPVVEVNNK--- 589 Query: 631 SKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHI 690 FIAN +L+ + L+TGPNM GKSTFLRQNALI ++A MGS+VPA AHI Sbjct: 590 ---FIANSINLA--------GIHLITGPNMAGKSTFLRQNALIAVLAHMGSFVPAESAHI 638 Query: 691 GIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSI 750 G++DK+FSRVG+ DN+ +G STFMVEMIETA+I+NQAT++S VILDEIGRGT DGLSI Sbjct: 639 GVIDKIFSRVGATDNITAGYSTFMVEMIETATIVNQATDRSLVILDEIGRGTGVYDGLSI 698 Query: 751 AWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIA 810 A A IE++H N+CR + ATH+HELT +SK LK +++ + N +IFLH+VI GIA Sbjct: 699 AQAVIEHIHNVNKCRAIFATHYHELTKVSKYLKNVKCFCVKIREWNGEVIFLHEVIEGIA 758 Query: 811 DHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 D SYGI V KLAG P++V++RA ++ FE+L Sbjct: 759 DESYGIHVAKLAGFPDSVLNRASEV---FEEL 787 >gi|258542749|ref|YP_003188182.1| DNA mismatch repair protein MutS [Acetobacter pasteurianus IFO 3283-01] gi|256633827|dbj|BAH99802.1| DNA mismatch repair protein MutS [Acetobacter pasteurianus IFO 3283-01] gi|256636886|dbj|BAI02855.1| DNA mismatch repair protein MutS [Acetobacter pasteurianus IFO 3283-03] gi|256639939|dbj|BAI05901.1| DNA mismatch repair protein MutS [Acetobacter pasteurianus IFO 3283-07] gi|256642995|dbj|BAI08950.1| DNA mismatch repair protein MutS [Acetobacter pasteurianus IFO 3283-22] gi|256646050|dbj|BAI11998.1| DNA mismatch repair protein MutS [Acetobacter pasteurianus IFO 3283-26] gi|256649103|dbj|BAI15044.1| DNA mismatch repair protein MutS [Acetobacter pasteurianus IFO 3283-32] gi|256652090|dbj|BAI18024.1| DNA mismatch repair protein MutS [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655147|dbj|BAI21074.1| DNA mismatch repair protein MutS [Acetobacter pasteurianus IFO 3283-12] Length = 884 Score = 632 bits (1630), Expect = e-179, Method: Compositional matrix adjust. Identities = 362/908 (39%), Positives = 532/908 (58%), Gaps = 56/908 (6%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K +TP M Q+ +K+ NP++L+F+RMGDFYELFFDDA A+ L I LT RG H G+ IP Sbjct: 7 KGATPAMAQWFTLKAENPEALLFFRMGDFYELFFDDATAAAAALDIALTARGTHAGEPIP 66 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVPV A Y+ +LI+ G R+A+ EQ E+P + + NK + R VVR++TPGTLTED Sbjct: 67 MCGVPVAAAPAYLARLIRRGFRVAVAEQTETPRKGRS-ANKGPLARGVVRVITPGTLTED 125 Query: 143 QLLSPTDSNYLMAVARIR----------------TEWAIAWIDISTGIFKISTSNHDRLI 186 +LL P SN L+A+A T AWID+STG+F+ + L Sbjct: 126 ELLEPGRSNLLLALALTAPQTKGKGKKAEASFADTVIGAAWIDVSTGLFETESLTGKGLP 185 Query: 187 SDIMRIDPREIIFSE-KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITT 245 + + R+DP EI+ L+ E + ET+ + A + R+A +++ + Sbjct: 186 ALLGRLDPAEILAPAILNLADYEARRAPETVASGA----------DTARQRLASAFDVAS 235 Query: 246 VDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT 305 ++ FG+F+ E AAA A+ Y++++Q P + +P ++ L ID A R++L+ILR Sbjct: 236 IEAFGTFTDEESVAAAMAVEYVQRSQAGKLPRLAHPVPQNESGILGIDPATRASLDILRA 295 Query: 306 LSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQ 365 G E +L ++ +++ AG R+ AE +A+PLT + +I R + + ++ + ++ Sbjct: 296 RDGGDEHTLFSAVNRTVSAAGARMLAEWLAAPLTHAGQIAARQEGWWWLKEDALRREALR 355 Query: 366 KILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKND--LPEELRGAVEK 423 LK +PD+ R+L RL +GRG+P+D+A +RDG+ + D LP L AV + Sbjct: 356 GTLKKAPDIARALGRLSLGRGQPRDLAAMRDGLMVAREAARILTAADASLPPALHQAVTR 415 Query: 424 LKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 L Q+LE L+ L+++LP DGG + G DA LDE R LRD S+R+IA LQ KYA Sbjct: 416 LGG-GQALEAELARALAENLPARLDDGGVIAQGYDAKLDEYRGLRDDSRRLIAGLQAKYA 474 Query: 484 EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDL 543 + +LKI+H+ LGY +EV ++++ LK K I RQ ++ RF T EL L Sbjct: 475 AHYGLNSLKIRHHAQLGYVMEVPVAASAKLK----DKPELILRQGTASNARFATEELSTL 530 Query: 544 ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCR 603 + RIT A A E E F L ++ + S+ +Q +A++D+ + A LA +CR Sbjct: 531 DARITEAAEKASQREKELFGALVEQVLAE-RSMPVLAQALAVLDVLQSCADLAGNGTWCR 589 Query: 604 PIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 P + F ++ RHP+VE L + F N CDL+ P + + LLTGPNM GK Sbjct: 590 PEVTEDFAFALEGCRHPVVEAALPAGTR--FTPNTCDLA-PQQR----VMLLTGPNMAGK 642 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 ST+LRQ AL VI+AQ G VPA IG+VD+LFSRVG++D+LA GRSTFMVEM ETA+I Sbjct: 643 STYLRQTALAVILAQGGFPVPADRVRIGVVDQLFSRVGASDDLARGRSTFMVEMTETAAI 702 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLK 783 LNQA +S V++DEIGRGTATLDGL+IAWA +E LH + RCR + ATHFHEL+ L +L Sbjct: 703 LNQAGPRSLVVVDEIGRGTATLDGLAIAWAVLEALHSSVRCRAIFATHFHELSRLVDTLP 762 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY 843 R T+ V + I+FLH+V+ G A S+G+ V +LAG+P+ V+ RA +L+ E+ Sbjct: 763 RLSLHTMAVREWRGQIVFLHEVLAGSAKKSWGVHVARLAGVPHAVVDRAGRLLRELERAE 822 Query: 844 HHNQKDMRLY-YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTL 902 + + + L+ + E +N LSK ++ ++ D ++P AL LY L Sbjct: 823 NTIPEPLPLFDTQKTLPPEPQNTLSK-------RLMDIDPDSLTPRAALDLLY-----EL 870 Query: 903 EKYSTDED 910 K + ED Sbjct: 871 RKEAAQED 878 >gi|329114651|ref|ZP_08243410.1| DNA mismatch repair protein MutS [Acetobacter pomorum DM001] gi|326696131|gb|EGE47813.1| DNA mismatch repair protein MutS [Acetobacter pomorum DM001] Length = 946 Score = 630 bits (1626), Expect = e-178, Method: Compositional matrix adjust. Identities = 359/894 (40%), Positives = 531/894 (59%), Gaps = 49/894 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K +TP M Q+ +K+ NP++L+F+RMGDFYELFFDDA A+ L I LT RG H G+ IP Sbjct: 71 KGATPAMAQWFTLKAENPEALLFFRMGDFYELFFDDATAAAAALDIALTARGTHAGEPIP 130 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVPV A Y+ +LI+ G R+A+ EQ E+P + + NK + R VVR++TPGTLTED Sbjct: 131 MCGVPVAAAPAYLARLIRRGFRVAVAEQTETPRKGRP-ANKGPLARGVVRVITPGTLTED 189 Query: 143 QLLSPTDSNYLMAVARIRTEW--------------AIAWIDISTGIFKISTSNHDRLISD 188 +LL P SN L+A+A + AWID+STG+F+ + L + Sbjct: 190 ELLEPGRSNLLLALALTAPQGKGKKAEASFADTVIGAAWIDVSTGLFETESLTGKGLPAL 249 Query: 189 IMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDT 248 + R+DP E++ + L+ A+Y++ A V + R+A +++ +++ Sbjct: 250 LGRLDPAEVL-APAVLNLADYEARR--------APETVASGADTARQRLASAFDVASIEA 300 Query: 249 FGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG 308 FG+F+ E AAA A+ Y++++Q P + +P ++ L ID A R++L+ILR G Sbjct: 301 FGTFTDEESVAAAMAVEYVQRSQAGKLPRLAHPVPQNESGILGIDPATRASLDILRARDG 360 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKIL 368 E +L ++ +++ AG R+ AE +A+PLT + +I R + + ++ + ++ IL Sbjct: 361 GDEHTLFSAVNRTVSAAGARMLAEWLAAPLTHAGQIAARQEGWWWLKEDSVRREALRGIL 420 Query: 369 KSSPDVPRSLSRLKIGRGEPKDIAVIRDGI---RSGINILNLFLKNDLPEELRGAVEKLK 425 K +PD+ R+L RL +GRG+P+D+A +RDG+ R IL LP L AV +L Sbjct: 421 KKAPDIARALGRLSLGRGQPRDLAAMRDGLMVAREAARILTAS-AGSLPPVLHQAVTRLG 479 Query: 426 KLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE 485 Q+LE L L+++LP DGG + G DA LDE R LRD S+R+IA LQ KYA Sbjct: 480 G-GQALEAELMRALAENLPARLDDGGVIAQGYDAKLDEYRGLRDDSRRLIAGLQAKYAAH 538 Query: 486 TKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 + +LKI+H+ LGY +EV ++++ LK K I RQ ++ RF T EL L+ Sbjct: 539 YGLNSLKIRHHAQLGYVMEVPVAASAKLK----DKPELILRQGTASNARFATEELSTLDA 594 Query: 546 RITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPI 605 RIT A A E E F L ++ + S+ +Q +A++D+ + A LA +CRP Sbjct: 595 RITEAAEKASQREKELFSALVEQVLAE-RSMPVLAQALAVLDVLQSCADLAGSGTWCRPE 653 Query: 606 IDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKST 665 + F ++ RHP+VE L + F N CDL+ P + + LLTGPNM GKST Sbjct: 654 VTEDFAFALEGCRHPVVEAALPAGTR--FTPNTCDLA-PQQR----VMLLTGPNMAGKST 706 Query: 666 FLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILN 725 +LRQ AL VI+AQ G VPA IG+VD+LFSRVG++D+LA GRSTFMVEM ETA+ILN Sbjct: 707 YLRQTALAVILAQGGFPVPADRVRIGVVDQLFSRVGASDDLARGRSTFMVEMTETAAILN 766 Query: 726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRF 785 QA +S V++DEIGRGTATLDGL+IAW+ +E LH + RCR + ATHFHEL+ L +L R Sbjct: 767 QAGPRSLVVVDEIGRGTATLDGLAIAWSVLEALHSSVRCRAIFATHFHELSRLVDTLPRL 826 Query: 786 HNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH 845 T+ V + I+FLH+V+ G A S+G+ V +LAG+P+ V+ RA +L+ E+ + Sbjct: 827 SLHTMAVREWRGQIVFLHEVLAGSAKKSWGVHVARLAGVPHAVVDRAGRLLRELERAENT 886 Query: 846 NQKDMRLY-YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + L+ + E +N LSK +E ++ D ++P AL LY ++ Sbjct: 887 IPEPLPLFDTQKALPPEPQNTLSKR---LIE----IDPDSLTPRAALDLLYELR 933 >gi|15604167|ref|NP_220682.1| DNA mismatch repair protein MutS [Rickettsia prowazekii str. Madrid E] gi|6647605|sp|Q9ZDM9|MUTS_RICPR RecName: Full=DNA mismatch repair protein mutS gi|3860859|emb|CAA14759.1| DNA MISMATCH REPAIR PROTEIN MUTS (mutS) [Rickettsia prowazekii] Length = 891 Score = 629 bits (1621), Expect = e-178, Method: Compositional matrix adjust. Identities = 353/899 (39%), Positives = 548/899 (60%), Gaps = 47/899 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 N +T MM+QY++IK + D L+ +RMGDFYELF++DA+LAS LGI LTKRGK+ ++ Sbjct: 16 NYNVATKMMQQYLDIKFAHLDCLLLFRMGDFYELFYEDAILASNILGIALTKRGKNCEEE 75 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR-GNKSLVRRNVVRLVTPGTL 139 IPMCGVP H HY+ KLI+ +++AIC+Q+E+P EAKKR G K++V R+V R++TPGT+ Sbjct: 76 IPMCGVPYHALEHYLTKLIEENYKVAICDQLETPEEAKKRDGYKAVVTRDVTRIITPGTI 135 Query: 140 TEDQLLSPTDSNYL--MAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPRE 196 E+ L+S T+ NYL + + + + +I +D+ST IF I+ + +++++ R+ RE Sbjct: 136 IEENLISVTEPNYLTSLVIPKNKKTASICCVDLSTSKIFVINVPETE-ILNELARLKSRE 194 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 I+ SE S S+ + Q + FF + E I D+Y I + G S + Sbjct: 195 ILLSENLKSSNISDSILKQFNCRITYQVDSFFAINKCEKIILDFYKIRDIKGIGEISNSQ 254 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 A + + Y+ TQ N P + P+ + + + ID + R NLEI+ L G+ S+L Sbjct: 255 ICAIGSILEYLSLTQKQNIPHLPIPKIINFHNYMTIDFSTRRNLEIVTNLQGNLYGSVLN 314 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 T+++++T GGRL ++SPLT+ KIN RL+ FF N ++ I+++LK++ D+ R Sbjct: 315 TLNHTVTTQGGRLLYHFLSSPLTNIAKINHRLNITEFFYSNLGIVTRIRELLKNTSDIER 374 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN---DLPEELRGAVEKLKKLPQSLEK 433 L+R+ + R +D+ I+ + + I LF ++ +LP +EK+ K P S + Sbjct: 375 CLTRITMNRSSGRDLLSIKYTLETAKTIKGLFSESYGLNLPH----FIEKIIK-PLSGDA 429 Query: 434 TLSSMLS----DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 L +++ +D P DGG ++ + + L + K + L+ +Y +ET+I+ Sbjct: 430 ELYNLIHMSIREDAPNNLNDGGIIKYEFHPKIAQLNDLINNKKLHVEKLKDQYRKETRIE 489 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 +LKI HNN LG+FI++T + + K L+ K FIHRQT N R+TT EL +LEN + N Sbjct: 490 SLKISHNNVLGFFIDITPKNVN---KILDPK--FIHRQTTINSVRYTTYELQNLENELVN 544 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 A + +E E + + +IE+S L + ++ +D+ A +A E +Y +P N Sbjct: 545 AQTLVIRLEKELYTDICRKVIEKSSYLKILANSLSGLDVFCNFAYIADEYDYTKPEFTND 604 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 +F + GRHP+VE L++ +SK F+ NDC LS + ++WL+TGPNM GKST+LRQ Sbjct: 605 LSFDIVKGRHPVVEAALRK-TSKSFVYNDCHLS-----EAERIWLITGPNMAGKSTYLRQ 658 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 NA+I I+AQ+GS+VPA A IG+VDK+FSR+G+AD+L G+STFM EM+ET++IL Q+T Sbjct: 659 NAIITIIAQIGSFVPAKSAKIGVVDKIFSRIGAADDLIKGQSTFMAEMLETSAILAQSTK 718 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 S +ILDE+GRGT+T DG+SIAW+ +EY+H+ +CR L ATH+HELT + L N T Sbjct: 719 NSLIILDEVGRGTSTYDGVSIAWSVLEYIHDKLQCRCLFATHYHELTVMKNFLPALQNYT 778 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 + + +S + I+FLH +I G ++ SYG+ V LAGLP +VI+RA IL FEK+ +K+ Sbjct: 779 IAIEESGKDILFLHNIILGASNKSYGLHVAALAGLPTSVINRAAQILLKFEKISISKEKN 838 Query: 850 MRLYYPEIQTKESKNNLS----------KNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + NNLS N KL E+ K ++ D++SP AL+ +Y K Sbjct: 839 I--------LSNASNNLSLFNFEHEKPISNSKL-DEEFKTIDPDKISPKEALELIYKFK 888 >gi|292571897|gb|ADE29812.1| DNA mismatch repair protein MutS [Rickettsia prowazekii Rp22] Length = 891 Score = 629 bits (1621), Expect = e-177, Method: Compositional matrix adjust. Identities = 353/899 (39%), Positives = 548/899 (60%), Gaps = 47/899 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 N +T MM+QY++IK + D L+ +RMGDFYELF++DA+LAS LGI LTKRGK+ ++ Sbjct: 16 NYNVATKMMQQYLDIKFAHLDCLLLFRMGDFYELFYEDAILASNILGIALTKRGKNCEEE 75 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR-GNKSLVRRNVVRLVTPGTL 139 IPMCGVP H HY+ KLI+ +++AIC+Q+E+P EAKKR G K++V R+V R++TPGT+ Sbjct: 76 IPMCGVPYHALEHYLTKLIEENYKVAICDQLETPEEAKKRDGYKAVVTRDVTRIITPGTI 135 Query: 140 TEDQLLSPTDSNYL--MAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPRE 196 E+ L+S T+ NYL + + + + +I +D+ST IF I+ + +++++ R+ RE Sbjct: 136 IEENLISVTEPNYLTSLVIPKNKKTASICCVDLSTSKIFVINVPETE-ILNELARLKSRE 194 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 I+ SE S S+ + Q + FF + E I D+Y I + G S + Sbjct: 195 ILLSENLKSSNISDSILKQFNCRITYQVDSFFAINKCEKIILDFYKIRDIKGIGEISNSQ 254 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 A + + Y+ TQ N P + P+ + + + ID + R NLEI+ L G+ S+L Sbjct: 255 ICAIGSILEYLSLTQKQNIPHLPIPKIINFHNYMTIDFSTRRNLEIVTNLQGNLYGSVLN 314 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 T+++++T GGRL ++SPLT+ KIN RL+ FF N ++ I+++LK++ D+ R Sbjct: 315 TLNHTVTTQGGRLLYHFLSSPLTNIAKINHRLNITEFFYSNLGIVTRIRELLKNTSDIER 374 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN---DLPEELRGAVEKLKKLPQSLEK 433 L+R+ + R +D+ I+ + + I LF ++ +LP +EK+ K P S + Sbjct: 375 CLTRITMNRSSGRDLLSIKYTLETAKTIKGLFSESYGLNLPH----FIEKIIK-PLSGDA 429 Query: 434 TLSSMLS----DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 L +++ +D P DGG ++ + + L + K + L+ +Y +ET+I+ Sbjct: 430 ELYNLIHMSIREDAPNNLNDGGIIKYEFHPKIAQLNDLINNKKLHVEKLKDQYRKETRIE 489 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 +LKI HNN LG+FI++T + + K L+ K FIHRQT N R+TT EL +LEN + N Sbjct: 490 SLKISHNNVLGFFIDITPKNVN---KILDPK--FIHRQTTINSVRYTTYELQNLENELVN 544 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 A + +E E + + +IE+S L + ++ +D+ A +A E +Y +P N Sbjct: 545 AQTLVIRLEKELYTDICRKVIEKSSYLKILANSLSGLDVFCNFAYIADEYDYTKPEFTND 604 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 +F + GRHP+VE L++ +SK F+ NDC LS + ++WL+TGPNM GKST+LRQ Sbjct: 605 LSFDIVKGRHPVVEAALRK-TSKSFVYNDCHLS-----EAERIWLITGPNMAGKSTYLRQ 658 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 NA+I I+AQ+GS+VPA A IG+VDK+FSR+G+AD+L G+STFM EM+ET++IL Q+T Sbjct: 659 NAIITIIAQIGSFVPAKSAKIGVVDKIFSRIGAADDLIKGQSTFMTEMLETSAILAQSTK 718 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 S +ILDE+GRGT+T DG+SIAW+ +EY+H+ +CR L ATH+HELT + L N T Sbjct: 719 NSLIILDEVGRGTSTYDGVSIAWSVLEYIHDKLQCRCLFATHYHELTVMKNFLPALQNYT 778 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 + + +S + I+FLH +I G ++ SYG+ V LAGLP +VI+RA IL FEK+ +K+ Sbjct: 779 IAIEESGKDILFLHNIILGASNKSYGLHVAALAGLPTSVINRAAQILLKFEKIAISKEKN 838 Query: 850 MRLYYPEIQTKESKNNLS----------KNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + NNLS N KL E+ K ++ D++SP AL+ +Y K Sbjct: 839 I--------LSNASNNLSLFNFEHEKPISNSKL-DEEFKTIDPDKISPKEALELIYKFK 888 >gi|256996831|dbj|BAI22706.1| DNA mismatch repair protein [Acetobacter pasteurianus] Length = 884 Score = 626 bits (1615), Expect = e-177, Method: Compositional matrix adjust. Identities = 356/895 (39%), Positives = 530/895 (59%), Gaps = 49/895 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K +TP M Q+ +K+ NP++L+F+RMGDFYELFFDDA A+ L I LT RG H G+ IP Sbjct: 7 KGATPAMAQWFTLKAENPEALLFFRMGDFYELFFDDATAAAAALDIALTARGTHAGEPIP 66 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVPV A Y+ +LI+ G R+A+ EQ E+P + + NK + R VVR++TPGTLTED Sbjct: 67 MCGVPVAAAPAYLARLIRRGFRVAVAEQTETPRKGRP-ANKGPLARGVVRVITPGTLTED 125 Query: 143 QLLSPTDSNYLMA----VARIR------------TEWAIAWIDISTGIFKISTSNHDRLI 186 +LL P SN L+A +I+ T AWID+STG+F+ + L Sbjct: 126 ELLEPGRSNLLLALALTAPQIKGRGKKAEASFADTVIGAAWIDVSTGLFETESLTGKGLP 185 Query: 187 SDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTV 246 + + R+DP EI+ + L+ A+Y++ A V + R+A +++ ++ Sbjct: 186 ALLGRLDPAEIL-APAVLNLADYEARR--------APETVASGADTARQRLASAFDVASI 236 Query: 247 DTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL 306 + FG+F+ E AAA A+ Y++++Q P + +P ++ L ID A R++L+ILR Sbjct: 237 EAFGTFTDEESVAAAMAVEYVQRSQAGKLPRLAHPVPQNESGILGIDPATRASLDILRAR 296 Query: 307 SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK 366 G E +L ++ +++ AG R+ AE +A+PLT + +I R + + ++ + ++ Sbjct: 297 DGGDEHTLFSAVNRTVSAAGARMLAEWLAAPLTHAGQIAARQEGWWWLKEDALRREALRG 356 Query: 367 ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKND--LPEELRGAVEKL 424 LK +PD+ R+L RL +GRG+P+D+A +RDG+ + D LP L AV +L Sbjct: 357 TLKKAPDIARALGRLSLGRGQPRDLAAMRDGLMVAREAARILTAADASLPPALHQAVTRL 416 Query: 425 KKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAE 484 Q+LE + L+++LP DGG + G DA LDE R LRD S+R+IA LQ KYA Sbjct: 417 GG-GQALEAEPARALAENLPARLDDGGVIAQGYDAKLDEYRGLRDDSRRLIAGLQAKYAA 475 Query: 485 ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLE 544 + +LKI+++ LGY +EV ++++ LK K I RQ ++ RF T EL L+ Sbjct: 476 HYGLNSLKIRYHAQLGYVMEVPVAASAKLK----DKPELILRQGTASNARFATEELSTLD 531 Query: 545 NRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP 604 RIT A A E E F L ++ + S+ +Q +A++D+ + A LA +CRP Sbjct: 532 ARITEAAEKASQREKELFGALVEQVLAE-RSMPVLAQALAVLDVLQSCADLAGNGTWCRP 590 Query: 605 IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 + F ++ RHP+VE L + F N CDL+ P + + LLTGPNM GKS Sbjct: 591 EVTEDFAFALEGCRHPVVEAALPAGTR--FTPNTCDLA-PQQR----VMLLTGPNMAGKS 643 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 T+LRQ AL VI+AQ G VPA IG+VD+LFSRVG++D+LA GRSTFMVEM ETA+IL Sbjct: 644 TYLRQTALAVILAQGGFPVPADRVRIGVVDQLFSRVGASDDLARGRSTFMVEMTETAAIL 703 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR 784 NQA +S V++DEIGRGTATLDGL+IAWA +E LH + RCR + ATHFHEL+ L +L R Sbjct: 704 NQAGPRSLVVVDEIGRGTATLDGLAIAWAVLEALHSSVRCRAIFATHFHELSRLVDTLPR 763 Query: 785 FHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYH 844 T+ V + I+FLH+V+ G A S+G+ V +LAG+P+ V+ RA +L+ E+ + Sbjct: 764 LSLHTMAVREWRGQIVFLHEVLAGSAKKSWGVHVARLAGVPHAVVDRAGRLLRELERAEN 823 Query: 845 HNQKDMRLY-YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + L+ + E +N LSK ++ ++ D ++P AL LY ++ Sbjct: 824 TIPEPLPLFDTQKTLPPEPQNTLSK-------RLMDIDPDSLTPRAALDLLYELR 871 >gi|218674359|ref|ZP_03524028.1| DNA mismatch repair protein [Rhizobium etli GR56] Length = 529 Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust. Identities = 297/529 (56%), Positives = 395/529 (74%), Gaps = 9/529 (1%) Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 PR+LSRL + RG P+D+A IR G+++ + + LPEEL A+ LK LP SLE Sbjct: 1 PRALSRLALDRGGPRDLAAIRQGLQAAGGVAAMLADAMLPEELGEALFGLKALPASLETL 60 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L+ L+D+LP KRDGGFLRDGA A LDE R+LRDQS+R+IA LQL+YAEET I++LKIK Sbjct: 61 LAETLADELPLLKRDGGFLRDGASAELDEVRALRDQSRRVIAGLQLQYAEETGIRSLKIK 120 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 HNN LGYFIEVT+ +A + E+K RFIHRQTM++ RFTT EL DLE+RI NA + A Sbjct: 121 HNNILGYFIEVTAGNAGPMTDTAEAKARFIHRQTMASAMRFTTTELADLESRIANAADRA 180 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L IELE+F+ ++ A++ ++E++ + ++ +A+ID++ LA+LA+EQ YCRP +D S F + Sbjct: 181 LSIELEAFDRMTAAVVAEAEAIKSGARALAVIDVAAGLALLAEEQAYCRPQVDGSKMFAI 240 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 + GRHP+VE+ L++Q+ PF+AN CDLS + G +WLLTGPNMGGKSTFLRQNALI Sbjct: 241 EGGRHPVVEQALRRQAGGPFVANHCDLSPKDGAKDGAIWLLTGPNMGGKSTFLRQNALIA 300 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 I+AQMGS+VPA+ AHIGIVD+LFSRVG++D+LA GRSTFMVEM+ETA+ILNQA+++S VI Sbjct: 301 ILAQMGSFVPATSAHIGIVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQASDRSLVI 360 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDEIGRGTAT DGLSIAWA +E+LHE NRCRGL ATHFHELT LS+ L R NAT++V + Sbjct: 361 LDEIGRGTATFDGLSIAWAAVEHLHEANRCRGLFATHFHELTVLSEKLGRLSNATMRVKE 420 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----D 849 + +IFLH+V PG AD SYGIQV +LAGLP +V++RA D+L E N D Sbjct: 421 WDGDVIFLHEVGPGAADRSYGIQVARLAGLPASVVARARDVLTRLEDADRKNPASQLIDD 480 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L+ ++ +++ SK + E +K ++LD+M+P A+ LY +K Sbjct: 481 LPLFQVAVRREDAARGPSKVE----EALKAMSLDDMTPREAMDALYDLK 525 >gi|157803980|ref|YP_001492529.1| DNA mismatch repair protein MutS [Rickettsia canadensis str. McKiel] gi|166232131|sp|A8EZG1|MUTS_RICCK RecName: Full=DNA mismatch repair protein mutS gi|157785243|gb|ABV73744.1| hypothetical protein A1E_04085 [Rickettsia canadensis str. McKiel] Length = 891 Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust. Identities = 345/893 (38%), Positives = 533/893 (59%), Gaps = 35/893 (3%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 N +T MM+QY++IK + D L+ +RMGDFYE+F++DA +AS+ LGI LTKRGK+ ++ Sbjct: 16 NYDVATKMMQQYLDIKFAHLDCLLLFRMGDFYEMFYEDATIASKVLGIALTKRGKNGEEE 75 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGN-KSLVRRNVVRLVTPGTL 139 IPMCG+P H +Y+ KLIK H+IAIC+Q+E+P EAK +G K++V R+V R++TPGT+ Sbjct: 76 IPMCGIPYHALENYLTKLIKENHKIAICDQLETPEEAKNKGGYKAVVSRDVTRIITPGTI 135 Query: 140 TEDQLLSPTDSNYL--MAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREI 197 E+ ++ + NYL + + + + ++ ++D+ST + +++++ R+ PREI Sbjct: 136 IEENFIASDEPNYLASLVIPQNKETASLCYVDLSTSEIFVVNVPEAEILNELARLKPREI 195 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 + SE S ++F+ L Q + FF + E I D+Y + + G S + Sbjct: 196 LLSENLRSSNLADNIFKQLNFRITYQVDSFFAVNKCEKIILDFYKMKDIKGIGEISSGQI 255 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 + + Y+ TQ N P + P + S + ID A R NLEI+ G + S+L T Sbjct: 256 CTIGSILEYLSLTQKQNIPHLPIPRIINFHSYMAIDVATRRNLEIVTNSQGGSKGSVLST 315 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 I++++T GGRL ++SPLTD TKIN RL+ +FF NP +++ I++ LK D+ R Sbjct: 316 INHTVTKQGGRLLYNFLSSPLTDITKINQRLNITDFFYSNPAIVSKIREYLKRISDIERC 375 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN---DLPEELRGAVEKLKKLPQSLEKT 434 L+R+ + R D+ I+ + + I +F +LP+ + ++ L + L Sbjct: 376 LTRITMNRSSGHDLLSIKYTLETATIIKGVFFDVYGVNLPDFIEKIIKPLTG-NEELYNL 434 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + + + +D P +GG ++ + + L + K I L+ +Y +ET I +LKI Sbjct: 435 IEATIREDAPHNLNEGGIIKHEYHPKVAQLHDLINNGKLHIEKLRDQYRKETGIDSLKIC 494 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 HNN +G FI++T+ +A+ + + +FIHRQT N R+TT EL LE+ + NA Sbjct: 495 HNNVIGLFIDITAKNANKI-----TDPKFIHRQTTVNSVRYTTNELQKLESNLVNAKTLV 549 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E + + +I +S L + ++ +D+ A +A E +Y +P N +F + Sbjct: 550 ISLEKALYADICRQVIVKSSYLRMLAISLSRLDVFCNFAYVADEYDYVKPEFTNDLSFNI 609 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 GRHP+VEK L Q+ SK F+ NDC LS ++WL+TGPNM GKSTFLRQNA+I Sbjct: 610 VKGRHPVVEKAL-QRESKSFVYNDCRLS-----EFERIWLITGPNMAGKSTFLRQNAIIA 663 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMAQ+GS+VPA A IG+VDK+FSR+G+AD+L G+STFM EM+ET++IL Q+T S +I Sbjct: 664 IMAQIGSFVPAKSAKIGVVDKIFSRIGAADDLIKGQSTFMAEMLETSAILAQSTKNSLII 723 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDE+GRGT+T DG+SIAW+ +EY+H+ +CR L ATH+HELT +S L N T+ + + Sbjct: 724 LDEVGRGTSTYDGVSIAWSVLEYIHDKLKCRCLFATHYHELTFMSNFLPALQNYTIAIEE 783 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 + I+FLH +I G AD SYGI V LAGLP +VI+RA IL FEK K+ Sbjct: 784 LGKDILFLHNIISGAADRSYGIHVAALAGLPASVINRAEQILLKFEKTSTIKGKN----- 838 Query: 855 PEIQTKESKN----NLSKN-----DKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 I + ES N NL N +KL+ K + ++ D++SP AL+ +Y +K Sbjct: 839 --ILSTESNNFSLFNLKPNKTTISNKLYA-KFRTIDPDKLSPKEALELIYELK 888 >gi|91205203|ref|YP_537558.1| DNA mismatch repair protein [Rickettsia bellii RML369-C] gi|122425878|sp|Q1RJJ5|MUTS_RICBR RecName: Full=DNA mismatch repair protein mutS gi|91068747|gb|ABE04469.1| DNA mismatch repair protein MutS [Rickettsia bellii RML369-C] Length = 888 Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust. Identities = 351/891 (39%), Positives = 539/891 (60%), Gaps = 36/891 (4%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 ++T MM+QY++IK + D L+ +RMGDFYE+F++DA+LAS LGI LTKRGK+ +++PM Sbjct: 14 AATKMMQQYLDIKFAHLDCLLLFRMGDFYEMFYEDAVLASGVLGIALTKRGKNGDEEVPM 73 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGN-KSLVRRNVVRLVTPGTLTED 142 CGVP H +Y+ KLI+ +++AIC+Q+E+P EAK RG K++V RNV R++TPGT+ E+ Sbjct: 74 CGVPYHALENYLTKLIEENYKVAICDQLETPEEAKNRGGYKAVVNRNVTRIITPGTVIEE 133 Query: 143 QLLSPTDSNYL--MAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 L++ + NYL + V + + A+ + D+ST + +++++ R+ PREI+ S Sbjct: 134 NLITTVEPNYLASLVVPKNKDTAALCYADLSTSTIFVVNVPELEILNELARLKPREILLS 193 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 E S ++ + L Q + FF + E I D+Y + + G S + A Sbjct: 194 EHLRSSDLASNISKQLNFRITYQVDSFFAVNKCEKIILDFYKMKDIKGVGEISNSQICAI 253 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 + + Y+ TQ N P + P+ D S + ID + R NLEI+ G + SLL T+++ Sbjct: 254 GSILEYLTLTQKENIPNLPKPKIIDFHSYMTIDFSTRRNLEIVTNSCGGNKGSLLSTLNH 313 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 ++T GGRL ++SPLTD+ KIN RL+ FF N + ++++LK + D+ R L+R Sbjct: 314 TVTKQGGRLLYNFLSSPLTDTHKINQRLNITEFFHSNLDITAKVRELLKKTSDIERCLTR 373 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKN---DLPEELRGAVEKLKKLPQSLEKTLSS 437 + + RG +D+ I+ + + +I +F N +LP + V+ L + L + Sbjct: 374 ITMNRGSGRDLLSIKYTLETANSIKEIFFDNYGFELPSFIEKIVKPLIR-NDELYNLIEE 432 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + +D P DGG ++ + + L + K I L+ +Y +ET I +LKI HNN Sbjct: 433 SICEDAPNNLNDGGVIKHSYHPKVLQLHDLINNGKLHIEKLKDQYKKETGIDSLKISHNN 492 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 +G FI++T+ +A+ + + +FIHRQT N R+TT EL LE+ + NA + + Sbjct: 493 VIGLFIDITAKNANKI-----NDPKFIHRQTTVNSVRYTTAELQKLESDLVNAKTLVVSL 547 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E E +E + + +QS+ L + ++ ID+ A +A E +Y RP + +F + G Sbjct: 548 EKELYEDICKRVTKQSDYLRILASSLSGIDVFCNFAYIASENDYTRPEFTDDLSFDIVKG 607 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ L ++ K F+ NDC LS + ++WL+TGPNM GKSTFLRQNA+I I+A Sbjct: 608 RHPVVEEALNKER-KSFVHNDCHLS-----EAERIWLITGPNMAGKSTFLRQNAIIAIIA 661 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+GS+VPA A IG+VDK+FSR+G+AD+L G+STFM EM+ET++IL Q+T S +ILDE Sbjct: 662 QIGSFVPAKSARIGMVDKIFSRIGAADDLIKGQSTFMAEMLETSAILAQSTKNSLIILDE 721 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 +GRGT+T DG+SIAW+ +EY+H+ +CR L ATH+HELT + L N T+ + +S + Sbjct: 722 VGRGTSTYDGVSIAWSVLEYIHDKLKCRCLFATHYHELTIMDNFLPAMQNYTIAIEESGK 781 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 I+FLH +I G AD SYGI V LAGLP +VI+RA IL FEK K+ I Sbjct: 782 DILFLHNIIAGAADRSYGIHVAALAGLPASVINRAEQILLKFEKNAAGKGKN-------I 834 Query: 858 QTKESKNNLS---------KNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + ES NNLS +N KL EK K ++ D++SP AL+ LY +K+ Sbjct: 835 LSTES-NNLSLFAIESPKLQNSKL-EEKFKTIDPDKLSPKEALELLYQLKS 883 >gi|51473494|ref|YP_067251.1| DNA mismatch repair protein [Rickettsia typhi str. Wilmington] gi|81692305|sp|Q68X73|MUTS_RICTY RecName: Full=DNA mismatch repair protein mutS gi|51459806|gb|AAU03769.1| DNA mismatch repair protein MutS [Rickettsia typhi str. Wilmington] Length = 891 Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust. Identities = 346/894 (38%), Positives = 533/894 (59%), Gaps = 37/894 (4%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 N +T MM+QY++IK + D L+ +RMGDFYELF++DA+LAS LGI LTKRGK+ ++ Sbjct: 16 NYDVATKMMQQYLDIKFAHLDCLLLFRMGDFYELFYEDAILASNILGIALTKRGKNCEEE 75 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGN-KSLVRRNVVRLVTPGTL 139 IPMCGVP H HY+ KLI +++AIC+Q+E+P EAKKRG K++V R+V R++TPGT+ Sbjct: 76 IPMCGVPYHALEHYLTKLITENYKVAICDQLETPEEAKKRGGYKAVVTRDVTRIITPGTI 135 Query: 140 TEDQLLSPTDSNYL--MAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREI 197 E+ L+S + NYL + + + + +I ++D+ST I +++++ R+ REI Sbjct: 136 IEENLISAAEPNYLTSLVMTKNKKTASICYVDLSTSKIFIVNVPETEILNELARLKSREI 195 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 + SE S S+ + Q + FF + E I D+Y I + G S + Sbjct: 196 LLSENLKSSNLADSILKQFNCRITYQVDSFFAINKCEKIILDFYKIRDIKGIGEISSSQI 255 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 A + + Y+ TQ N P + P+ + S + ID + R NLEI+ + G+ S+L T Sbjct: 256 CAIGSILEYLSLTQKQNIPNLPIPKIINFHSYMTIDFSTRRNLEIVTNIQGNLHGSVLNT 315 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +++++T GGRL ++SPLT+ KIN RL+ FF N ++ I+++LK++ D+ R Sbjct: 316 LNHTVTKQGGRLLYHFLSSPLTNIAKINRRLNITEFFYSNLGIVTRIRELLKNTSDIERC 375 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN---DLPEELRGAVEKLKKLPQSLEKT 434 L+R+ + R +D+ I+ + + I LF ++ +LP + ++ L L Sbjct: 376 LTRITMNRSSGRDLLSIKYTLETAKIINGLFSESHSLNLPNFIGKIIKPLSG-DAELYNL 434 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + + +D P DGG ++ + + L + K + L+ +Y +ET I +LKI Sbjct: 435 IDMSIREDAPNNLNDGGIIKHEFHPKVAQLNDLINNGKLHVEKLKDQYRKETGIDSLKIS 494 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 HNN LG FI++T+ + + K L+ K FIHRQT N R+TT EL +LEN + NA Sbjct: 495 HNNVLGLFIDITAKNVN---KILDPK--FIHRQTTVNSVRYTTYELQNLENELVNAQTLV 549 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E E + + +IE+S L + ++ +D+ A +A E NY +P N +F + Sbjct: 550 ISLEKELYTDICRKVIEKSSYLRILANSLSGLDVFCNFAYIADEYNYTKPEFTNDLSFDI 609 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 GRHP+VE L ++SK F+ NDC LS + ++ L+TGPNM GKST+LRQNA+I Sbjct: 610 VKGRHPVVEAAL-LKTSKSFVYNDCHLS-----EAERICLITGPNMAGKSTYLRQNAIIT 663 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 I+AQ+GS+VPA A IG+VDK+FSR+G+AD+L G+STFM EM+ET++IL Q+T S +I Sbjct: 664 IIAQIGSFVPAKSAKIGVVDKIFSRIGAADDLIKGQSTFMAEMLETSAILAQSTKNSLII 723 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDE+GRGT+T DG+SIAW+ +EY+H+ +CR L ATH+HELT + L N T+ + + Sbjct: 724 LDEVGRGTSTYDGVSIAWSVLEYIHDKLKCRCLFATHYHELTVMKNFLPALQNYTIAIEE 783 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 S + I+FLH +I G ++ SYG+ V LAGLP +VI+RA IL FEK+ K++ Sbjct: 784 SGKDILFLHNIILGTSNKSYGLHVAALAGLPTSVINRAAQILLKFEKISISKGKNI---- 839 Query: 855 PEIQTKESKNNLS----------KNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + NNLS N KL E+ K ++ D++SP AL+ +Y K Sbjct: 840 ----VSTASNNLSLFNFEPQKHISNSKL-DEEFKTIDPDKISPKEALELIYKFK 888 >gi|157827459|ref|YP_001496523.1| DNA mismatch repair protein MutS [Rickettsia bellii OSU 85-389] gi|166232130|sp|A8GX86|MUTS_RICB8 RecName: Full=DNA mismatch repair protein mutS gi|157802763|gb|ABV79486.1| DNA mismatch repair protein [Rickettsia bellii OSU 85-389] Length = 888 Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust. Identities = 350/891 (39%), Positives = 539/891 (60%), Gaps = 36/891 (4%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 ++T MM+QY++IK + D L+ +RMGDFYE+F++DA+LAS LGI LTKRGK+ +++PM Sbjct: 14 AATKMMQQYLDIKFAHLDCLLLFRMGDFYEMFYEDAVLASGVLGIALTKRGKNGDEEVPM 73 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGN-KSLVRRNVVRLVTPGTLTED 142 CGVP H +Y+ KLI+ +++AIC+Q+E+P EAK RG K++V RNV R++TPGT+ E+ Sbjct: 74 CGVPYHALENYLTKLIEENYKVAICDQLETPEEAKNRGGYKAVVNRNVTRIITPGTVIEE 133 Query: 143 QLLSPTDSNYL--MAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 L++ + NYL + V + + A+ + D+ST + +++++ R+ PREI+ S Sbjct: 134 NLITTAEPNYLASLVVPKNKDTAALCYADLSTSTIFVVNVPELEILNELARLKPREILLS 193 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 E S ++ + L Q + FF + E I D+Y + + G S + A Sbjct: 194 EHLRSSDLASNISKQLNFRITYQVDSFFAVNKCEKIILDFYKMKDIKGVGEISNSQICAI 253 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 + + Y+ TQ N P + P+ D S + ID + R NLEI+ G + SLL T+++ Sbjct: 254 GSILEYLTLTQKENIPNLPKPKIIDFHSYMTIDFSTRRNLEIVTNSCGGNKGSLLSTLNH 313 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 ++T GGRL ++SPLTD+ KIN RL+ FF N + ++++LK + D+ R L+R Sbjct: 314 TVTKQGGRLLYNFLSSPLTDTHKINQRLNITEFFHSNLDITAKVRELLKKTSDIERCLTR 373 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKN---DLPEELRGAVEKLKKLPQSLEKTLSS 437 + + RG +D+ I+ + + +I +F N +LP + V+ L + L + Sbjct: 374 ITMNRGSGRDLLSIKYTLETANSIKEIFFDNYGFELPSFIEKIVKPLIR-NDELYNLIEE 432 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + +D P DGG ++ + + L + K I L+ +Y +ET I +LKI HNN Sbjct: 433 SICEDAPNNLNDGGVIKHSYHPKVLQLHDLINNGKLHIEKLKDQYKKETGIDSLKISHNN 492 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 +G FI++T+ +A+ + + +FIHRQT N R+TT EL LE+ + NA + + Sbjct: 493 VIGLFIDITAKNANKI-----NDPKFIHRQTTVNSVRYTTAELQKLESDLVNAKTLVVSL 547 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E E +E + + +QS+ L + ++ ID+ A +A E +Y RP + +F + G Sbjct: 548 EKELYEDICKRVTKQSDYLRILASSLSGIDVFCNFAYIASENDYTRPEFTDDLSFDIVKG 607 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ L ++ K F+ NDC LS + ++WL+TGPNM GKSTF+RQNA+I I+A Sbjct: 608 RHPVVEEALNKER-KSFVHNDCHLS-----EAERIWLITGPNMAGKSTFMRQNAIIAIIA 661 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+GS+VPA A IG+VDK+FSR+G+AD+L G+STFM EM+ET++IL Q+T S +ILDE Sbjct: 662 QIGSFVPAKSARIGMVDKIFSRIGAADDLIKGQSTFMAEMLETSAILAQSTKNSLIILDE 721 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 +GRGT+T DG+SIAW+ +EY+H+ +CR L ATH+HELT + L N T+ + +S + Sbjct: 722 VGRGTSTYDGVSIAWSVLEYIHDKLKCRCLFATHYHELTIMDNFLPAMQNYTIAIEESGK 781 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 I+FLH +I G AD SYGI V LAGLP +VI+RA IL FEK K+ I Sbjct: 782 DILFLHNIIAGAADRSYGIHVAALAGLPASVINRAEQILLKFEKNAAGKGKN-------I 834 Query: 858 QTKESKNNLS---------KNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + ES NNLS +N KL EK K ++ D++SP AL+ LY +K+ Sbjct: 835 LSTES-NNLSLFAIESPKLQNSKL-EEKFKTIDPDKLSPKEALELLYQLKS 883 >gi|67458875|ref|YP_246499.1| DNA mismatch repair protein [Rickettsia felis URRWXCal2] gi|75536684|sp|Q4UM86|MUTS_RICFE RecName: Full=DNA mismatch repair protein mutS gi|67004408|gb|AAY61334.1| DNA mismatch repair protein MutS [Rickettsia felis URRWXCal2] Length = 886 Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust. Identities = 346/892 (38%), Positives = 533/892 (59%), Gaps = 33/892 (3%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 N +T MM+QY++IK + D L+ +RMGDFYE+F++DA+LAS LGI LTKRGK+ ++ Sbjct: 11 NYDVATKMMQQYLDIKFAHLDCLLLFRMGDFYEMFYEDAILASNVLGIALTKRGKNGEEE 70 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGN-KSLVRRNVVRLVTPGTL 139 I MCGVP H +Y+ KLI+ +++AIC+Q+E+P EAK RG K++V R+V R++TPGT+ Sbjct: 71 IAMCGVPYHALENYLTKLIEENYKVAICDQLETPEEAKNRGGYKAVVTRDVTRIITPGTI 130 Query: 140 TEDQLLSPTDSNYL--MAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREI 197 E+ L++ + NYL + + + + ++ ++D+ST + +++++ R+ PREI Sbjct: 131 IEENLIASAEPNYLASLVITKNKETASLCYVDLSTSEIFVVNVPEAEILNELARLKPREI 190 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 + SE S S+F+ L Q + FF + E I D+Y + + G S + Sbjct: 191 LLSENLRSSNLADSIFKQLNFRITYQVDSFFAINKCEKIILDFYKMKDIKGIGEISSSQI 250 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 A + + Y+ TQ N P + P + S + ID A R NLEI+ G+ + SLL T Sbjct: 251 CAIGSILEYLSLTQKQNIPHLPIPRIINFHSYMTIDFATRRNLEIVTNSQGTLKGSLLNT 310 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +++++T GGRL ++SPLT+ KIN RL+ FF N ++ I+++LK + D+ R Sbjct: 311 LNHTVTKQGGRLLYNFLSSPLTNIAKINHRLNITEFFYSNLEIVKRIRELLKKTSDIERC 370 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN---DLPEELRGAVEKLKKLPQSLEKT 434 L+R+ + R +D+ I+ + + I +F +LP+ + ++ L L Sbjct: 371 LTRITMNRSSGRDLLSIKYTLEAATIIKGVFFDAYGFNLPDFIEKIIKPLSG-DAELYNL 429 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + + +D P DGG ++ + + L + K I L+ +Y +ET I +LKI Sbjct: 430 IDESIREDAPNNLNDGGIIKHEYHPKVAQLHDLINNGKLHIEKLKDQYCKETGIDSLKIS 489 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 HNN +G FI++T+ + + K L+ K FIHRQT N R+TT EL LE+ + NA Sbjct: 490 HNNVIGLFIDITAKNVN---KILDPK--FIHRQTTVNSVRYTTTELQKLESELANAKTLV 544 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E E + + N +IE++ L + ++ +D+ A +A E +Y +P + +F + Sbjct: 545 ISLEKELYADICNQVIEKASYLRMLASSLSGLDVFCNFAYIADEYDYVKPEFTDDLSFDI 604 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 GRHP+VEK LK++S K F+ NDC LS ++WL+TGPNM GKSTFLRQNA+I Sbjct: 605 VKGRHPVVEKALKRES-KSFVYNDCHLS-----EFERIWLITGPNMAGKSTFLRQNAIIA 658 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 I+AQ+GS+VPA A IG+VDK+FSR+G+AD+L G+STFM EM+ET++IL Q+T S +I Sbjct: 659 IIAQIGSFVPAKSAKIGVVDKIFSRIGAADDLIRGQSTFMAEMLETSAILAQSTKNSLII 718 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDE+GRGT+T DG+SIAW+ +EY+H+ +CR L ATH+HELT +S L N T+ + + Sbjct: 719 LDEVGRGTSTYDGVSIAWSVLEYIHDKLKCRCLFATHYHELTVMSNFLPALQNYTIAIEE 778 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 S + I+FLH +I G AD SYGI V LAGLP +VI+RA IL FEK K+ Sbjct: 779 SGKDILFLHNIISGAADRSYGIHVAALAGLPASVINRAEQILLKFEKTSTGKGKN----- 833 Query: 855 PEIQTKESKN----NLSKNDKLFV----EKIKCLNLDEMSPLTALKTLYAVK 898 I + ES N NL N E+ + + D++SP AL+ +Y +K Sbjct: 834 --ILSTESNNLSLFNLEPNKTTISSKLDEQFRTIAPDKLSPKEALELIYELK 883 >gi|325110084|ref|YP_004271152.1| DNA mismatch repair protein MutS [Planctomyces brasiliensis DSM 5305] gi|324970352|gb|ADY61130.1| DNA mismatch repair protein MutS [Planctomyces brasiliensis DSM 5305] Length = 925 Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust. Identities = 339/895 (37%), Positives = 519/895 (57%), Gaps = 46/895 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM ++ E+K +PDSL+ +RMGDFYELF+DDA++A++ LG+TLT R K I M G Sbjct: 52 TPMMERFFEVKRQHPDSLLLFRMGDFYELFYDDAVIAAKILGLTLTSRDKGSANPISMAG 111 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H+ ++Y+QKLI+ GHR AIC+Q+E P +AK LV+R V R+VTPGTLTED LL Sbjct: 112 FPYHSLDNYLQKLIRNGHRAAICDQVEDPKQAK-----GLVKREVTRIVTPGTLTEDALL 166 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 P +NYL AV + +AW+++STG F+++ + D L ++ R+ P E++ ++++ Sbjct: 167 DPRQNNYLAAVCLYKKTAGLAWLELSTGRFQLAEVDPDNLSDELSRLHPAELLINQEQRD 226 Query: 206 HAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTF---GSFSQVEKTAAA 261 S L ++ + + P F ++ ++ + +++ F G + V TAA Sbjct: 227 DERLASASLALPHMLMTERPPWSFAGEQPYEQLCKHFRVRSLEGFDIEGPSTAV--TAAG 284 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 + Y+++TQ I E + L ID A R +LE+ TL G R+ +LL ID Sbjct: 285 VLLEYVQETQRTAIDHIRRIEPYSPEERLLIDEATRRSLELTHTLREGKRQGTLLDVIDE 344 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 ++T G RL E I++PLT+ I R D++ + NP+L+N ++ L ++ D+ R +R Sbjct: 345 TVTAMGARLIGEWISNPLTNRQHITRRADAVEELVGNPLLLNEFREQLDNTYDLQRLATR 404 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKT---L 435 + GR P+D+ + L+L K L + + +L +L E + Sbjct: 405 VATGRCSPRDLTWL-------AKTLSLLPATKKSLSQCQAARLHELHQLLDECEDVCADI 457 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 SS L +D P DG +R G + LDE R L K IA Q + E T I+NLK+ Sbjct: 458 SSCLVEDPPINVADGDLVRAGYNDRLDELRDLSRGGKEWIARYQAEEIERTGIQNLKVGF 517 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY++EVT++ A + +D +I +QT+ N RF T +L + E ++ +A +L Sbjct: 518 NKVFGYYLEVTAAQAQKVPED------YIRKQTLKNQERFITPQLKEHEEKVLSADQQSL 571 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E E F+ L + +Q + L +++ +A +D+ + A A ++CRP++ S V Sbjct: 572 ALETEIFQQLRERVADQLQRLQQSAETLAELDVLGSFAHTAANNDFCRPVLTESPVLRVV 631 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDK---------NSGKLWLLTGPNMGGKSTF 666 DGRHP+++ L + F+ ND L P ++G++ ++TGPNM GKST+ Sbjct: 632 DGRHPVLDHILPRGQ---FVPNDIHLGQPEKAEADEESTLPDAGRVQIITGPNMAGKSTY 688 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ AL+ ++AQ GS+VPA A +G+VD++F+RVG++D L+ G+STFMVEM ETA ILN Sbjct: 689 IRQAALVTLLAQAGSFVPAREATVGLVDRIFARVGASDELSKGQSTFMVEMTETARILNT 748 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 ATN+S VILDEIGRGT+T DGLS+AWA EYLH+T R L ATH+HELT+L ++L Sbjct: 749 ATNRSLVILDEIGRGTSTYDGLSLAWAVTEYLHDTIGARTLFATHYHELTELEQTLSAVR 808 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN 846 N + V + + +IFLHK++PG AD SYGI V +LAG+P V+ RA +IL T E H Sbjct: 809 NWNVSVYEKDGDVIFLHKIVPGAADRSYGIHVARLAGVPTDVLRRAGEILSTLES--DHV 866 Query: 847 QKDMRLYYPEIQTKESKN--NLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + + P QT + +EK+K L+LD ++P AL LY ++ Sbjct: 867 DETGKPTIPPRQTSPQRQLTLFEAPPHPVIEKLKKLDLDALTPKAALDRLYELRG 921 >gi|34580662|ref|ZP_00142142.1| DNA mismatch repair protein MutS [Rickettsia sibirica 246] gi|28262047|gb|EAA25551.1| DNA mismatch repair protein MutS [Rickettsia sibirica 246] Length = 886 Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust. Identities = 342/899 (38%), Positives = 535/899 (59%), Gaps = 33/899 (3%) Query: 14 EQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR 73 +++ + N +T MM+QY++IK + D L+ +RMGDFYE+F++DA+LAS LGI LTKR Sbjct: 4 QELKQKYNYDVATKMMQQYLDIKFAHLDCLLLFRMGDFYEMFYEDAILASNVLGIALTKR 63 Query: 74 GKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGN-KSLVRRNVVR 132 GK+ ++I MCGVP H +Y+ KLI+ +++AIC+Q+E+P EAK RG K++V R+V R Sbjct: 64 GKNGEEEIAMCGVPYHALENYLTKLIEANYKVAICDQLETPEEAKNRGGYKAVVTRDVTR 123 Query: 133 LVTPGTLTEDQLLSPTDSNYL--MAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIM 190 ++TPGT+ E+ L++ + NYL + + + + ++ ++D+ST + +++++ Sbjct: 124 IITPGTIIEENLIASAEPNYLASLVIPKNKETASLCYVDLSTSEIVVVNVPETEILNELA 183 Query: 191 RIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG 250 R+ PREI+ SE S S+F+ L Q + FF + E I D+Y + + G Sbjct: 184 RLKPREILLSENLRSSNLADSIFKQLNFRITYQVDSFFAINKCEKIILDFYKMKDIKGIG 243 Query: 251 SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR 310 S + A + + Y+ TQ N P + P S + ID + R NLEI+ G Sbjct: 244 EISSSQICAIGSVLEYLSLTQKQNIPHLPIPRIIKFHSYMTIDFSTRRNLEIVTHSQGGS 303 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 + SLL T+++++T GGRL ++SPLT+ KIN RL+ FF N ++ I+++LK Sbjct: 304 QGSLLSTLNHTVTKQGGRLLYNFLSSPLTNIAKINHRLNITEFFYSNLEIVKKIRELLKK 363 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN---DLPEELRGAVEKLKKL 427 + D+ R L+R+ + R +D+ I+ + + I +F +LP+ + ++ L Sbjct: 364 TSDIERCLTRITMNRSSGRDLLSIKYTLETATIIKGVFFDAYGFNLPDFIEKIIKPLSG- 422 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 L + + +D P DGG ++ + + L + K I L+ +Y +ET Sbjct: 423 DAELYNLIDKTIREDAPNNLNDGGIIKHKYHPKVAQLHDLINNGKLYIEKLKDQYRKETG 482 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 I +LKI HNN +G FI++T+ + + K L+ K FIHRQT N R+TT EL LE+ + Sbjct: 483 IDSLKISHNNVIGLFIDITAKNVN---KILDPK--FIHRQTTVNHVRYTTAELQKLESEL 537 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 NA + +E E + + + +IE++ L + ++ +D+ A +A E +Y +P Sbjct: 538 VNAKTLVISLEKELYADICSQVIEKASYLRMLASSLSGLDVFCNFAYIADEYDYVKPEFT 597 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 + +F + GRHP+VE+ L QQ SK F+ NDC LS ++WL+TGPNM GKSTFL Sbjct: 598 DDLSFDIVKGRHPVVERAL-QQESKSFVYNDCHLS-----ELERIWLITGPNMAGKSTFL 651 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQNA+I I+AQ+GS+VPA A IG+VDK+FSR+G+AD+L G+STFM EM+ET++IL Q+ Sbjct: 652 RQNAIIAIIAQIGSFVPAKSAKIGVVDKIFSRIGAADDLIKGQSTFMAEMLETSAILAQS 711 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 T S +ILDE+GRGT+T DG+SIAW+ +EY+H+ +CR L ATH+HELT +S L N Sbjct: 712 TKNSLIILDEVGRGTSTYDGVSIAWSVLEYIHDKLKCRCLFATHYHELTVMSNFLPALQN 771 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK------ 841 T+ + +S + I+FLH +I G AD SYG+ V LAGLP +VI+RA IL FEK Sbjct: 772 YTIAIEESGKDILFLHNIISGAADRSYGLHVAALAGLPASVINRAEQILLKFEKTSTGKG 831 Query: 842 --LYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + ++ L+Y E N + N KL K ++ D++SP AL+ +Y +K Sbjct: 832 KNILSTESNNLSLFYLE------PNKTTINSKL-DNKFSTIDPDKLSPKEALELIYELK 883 >gi|229586554|ref|YP_002845055.1| DNA mismatch repair protein MutS [Rickettsia africae ESF-5] gi|259511174|sp|C3PN02|MUTS_RICAE RecName: Full=DNA mismatch repair protein mutS gi|228021604|gb|ACP53312.1| DNA mismatch repair protein MutS [Rickettsia africae ESF-5] Length = 890 Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust. Identities = 340/892 (38%), Positives = 530/892 (59%), Gaps = 33/892 (3%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 N +T MM+QY++IK + D L+ +RMGDFYE+F++DA+LAS LGI LTKRGK+ ++ Sbjct: 15 NYDVATKMMQQYLDIKFAHLDCLLLFRMGDFYEMFYEDAILASNVLGIALTKRGKNGEEE 74 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGN-KSLVRRNVVRLVTPGTL 139 I MCGVP H +Y+ KLI+ +++AIC+Q+E+P EAK RG K++V R+V R++TPGT+ Sbjct: 75 IAMCGVPYHALENYLTKLIEANYKVAICDQLETPEEAKNRGGYKAVVTRDVTRIITPGTI 134 Query: 140 TEDQLLSPTDSNYL--MAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREI 197 E+ L++ + NYL + + + + ++ ++D+ST + +++++ R+ PREI Sbjct: 135 IEENLIASAEPNYLASLVIPKNKETASLCYVDLSTSEIVVVNVPETEILNELARLKPREI 194 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 + SE S S+F+ L Q + FF + E I D+Y + + G S + Sbjct: 195 LLSENLRSSNLADSIFKQLNLRITYQVDSFFAINKCEKIILDFYKMKDIKGIGEISSSQI 254 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 A + + Y+ TQ N P + P S + ID + R NLEI+ G + SLL T Sbjct: 255 CAIGSVLEYLSLTQKQNIPHLPIPRIIKFHSYMTIDFSTRRNLEIVTNSQGGSQGSLLST 314 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +++++T GGRL ++SPLT+ KIN RL+ FF N ++ I+++LK + D+ R Sbjct: 315 LNHTVTKQGGRLLYNFLSSPLTNIAKINHRLNITEFFYSNLEIVKKIRELLKKTSDIERC 374 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN---DLPEELRGAVEKLKKLPQSLEKT 434 L+R+ + R +D+ I+ + + I +F +LP+ + ++ L L Sbjct: 375 LTRITMNRSSGRDLLSIKYTLETATIIKGVFFDAYGFNLPDFIEKIIKPLSG-DAELYNL 433 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + + +D P DGG ++ + + L + K I L+ +Y +ET I +LKI Sbjct: 434 IDETIREDAPNNLNDGGIIKHEYHPKVAQLHDLINNGKLYIEKLKDQYRKETGIDSLKIS 493 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 HNN +G FI++T+ + + K L+ K FIHRQT N R+TT EL LE+ + NA Sbjct: 494 HNNVIGLFIDITAKNVN---KILDPK--FIHRQTTVNHVRYTTAELQKLESELVNAKTLV 548 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E E + + + +IE++ L + ++ +D+ A +A E +Y +P + +F + Sbjct: 549 ISLEKELYADICSQVIEKASYLRILASSLSGLDVFCNFAYIADEYDYVKPEFTDDLSFDI 608 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 GRHP+VEK L Q+ SK F+ NDC LS ++WL+TGPNM GKSTFLRQNA+I Sbjct: 609 VKGRHPVVEKAL-QRESKSFVYNDCHLS-----ELERIWLITGPNMAGKSTFLRQNAIIA 662 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 I+AQ+GS+VPA A IG+VDK+FSR+G+AD+L G+STFM EM+ET++IL Q+T S +I Sbjct: 663 IIAQIGSFVPAKSAKIGVVDKIFSRIGAADDLIKGQSTFMAEMLETSAILAQSTKNSLII 722 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDE+GRGT+T DG+SIAW+ +EY+H+ +CR L ATH+HELT +S L N T+ + + Sbjct: 723 LDEVGRGTSTYDGVSIAWSVLEYIHDKLKCRCLFATHYHELTVMSNFLPALQNYTIAIEE 782 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK--------LYHHN 846 S + I+FLH +I G AD SYG+ V LAGLP +VI+RA IL FEK + Sbjct: 783 SGKDILFLHNIISGAADRSYGLHVASLAGLPASVINRAEQILLKFEKTSTGKGKNILSTE 842 Query: 847 QKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ L+Y E + L K K + ++ D++SP AL+ +Y +K Sbjct: 843 SNNLSLFYLEPNKTTISSKLDK-------KFRTIDPDKLSPKEALELIYELK 887 >gi|157964373|ref|YP_001499197.1| DNA mismatch repair protein MutS [Rickettsia massiliae MTU5] gi|189083185|sp|A8F164|MUTS_RICM5 RecName: Full=DNA mismatch repair protein mutS gi|157844149|gb|ABV84650.1| DNA mismatch repair protein MutS [Rickettsia massiliae MTU5] Length = 891 Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust. Identities = 344/895 (38%), Positives = 531/895 (59%), Gaps = 33/895 (3%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 N +T MM+QY++IK + D L+ +RMGDFYE+F++DA+LAS LGI LTKRGK+ ++ Sbjct: 16 NYDVATKMMQQYLDIKFAHLDCLLLFRMGDFYEMFYEDAILASNVLGIALTKRGKNGEEE 75 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGN-KSLVRRNVVRLVTPGTL 139 I MCGVP H +Y+ KLI+ +++AIC+Q+E+P EAK RG K++V R+V R++TPGT+ Sbjct: 76 IAMCGVPYHALENYLTKLIEENYKVAICDQLETPEEAKNRGGYKAVVTRDVTRIITPGTI 135 Query: 140 TEDQLLSPTDSNYL--MAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREI 197 E+ L++ + NYL + + + + ++ ++D+ST + +++++ R+ PREI Sbjct: 136 IEENLIASAEPNYLASLVIPKNKETASLCYVDLSTSEIVVVNVPETEILNELARLKPREI 195 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 + SE S S+F+ L Q + FF + E I D+Y + + G S + Sbjct: 196 LLSENLRSSNLADSIFKQLNFRITYQVDSFFAINKCEKIILDFYKMKDIKGIGEISSSQI 255 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 A + + Y+ TQ N P + P + S + ID + R NLEI+ G + SLL T Sbjct: 256 CAIGSVLEYLSLTQKQNIPHLPIPRIINFHSYMTIDFSTRRNLEIVTNSQGGSQGSLLST 315 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +++++T GGRL ++SPLT+ KIN RL+ FF N ++ I+++LK + D+ R Sbjct: 316 LNHTVTKQGGRLLYNFLSSPLTNIAKINHRLNITEFFYSNLEIVKKIRELLKKTSDIERC 375 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN---DLPEELRGAVEKLKKLPQSLEKT 434 L+R+ + R +D+ I+ + + I +F +LP+ + ++ L L Sbjct: 376 LTRITMNRSSGRDLLSIKYTLETATIIKGVFCDAYGVNLPDFIEKIIKPLSG-DAELYNL 434 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + + +D P DGG ++ + + L + K I L+ +Y +ET I +LKI Sbjct: 435 IDETIREDAPNNLNDGGIIKHEYHPKVAQLHDLINNGKLHIDKLKDQYRKETGIDSLKIS 494 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 HNN +G FI++T+ + + K L+ K FIHRQT N R+TT EL LE+ + NA Sbjct: 495 HNNVIGLFIDITAKNVN---KILDPK--FIHRQTTVNHVRYTTAELQKLESELVNAKTLV 549 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E + + + +IE++ L + + +D+ A +A E +Y +P ++ +F + Sbjct: 550 ISLEKALYADICSQVIEKASYLRMLASSLNGLDVFCNFAYIADEYDYVKPEFTDALSFDI 609 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 GRHP+VEK L Q+ SK F+ NDC LS ++WL+TGPNM GKSTFLRQNA+I Sbjct: 610 VKGRHPVVEKAL-QRESKSFVYNDCHLS-----ELERIWLITGPNMAGKSTFLRQNAIIA 663 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 I+AQ+GS+VPA A IG+VDK+FSR+G+AD+L G+STFM EM+ET++IL Q+T S +I Sbjct: 664 IIAQIGSFVPAKSAKIGVVDKIFSRIGAADDLIKGQSTFMAEMLETSAILAQSTKNSLII 723 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDE+GRGT+T DG+SIAW+ +EY+H+ +CR L ATH+HELT +S L N T+ + + Sbjct: 724 LDEVGRGTSTYDGVSIAWSVLEYIHDKLKCRCLFATHYHELTVMSNFLPALQNYTIAIEE 783 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 S + I+FLH +I G AD SYG+ V LAGLP +VI+RA IL FEK K+ Sbjct: 784 SGKDILFLHNIISGAADRSYGLHVAALAGLPASVINRAKQILLKFEKTSTGKGKN----- 838 Query: 855 PEIQTKESKN----NLSKNDKLFV----EKIKCLNLDEMSPLTALKTLYAVKAWT 901 I + ES N NL N EK ++ D++SP AL+ +Y +K W Sbjct: 839 --ILSMESNNLSLFNLEPNKTTISSKLDEKFSTIDPDKLSPKEALELIYELKKWV 891 >gi|15892324|ref|NP_360038.1| DNA mismatch repair protein [Rickettsia conorii str. Malish 7] gi|24638062|sp|Q92IL9|MUTS_RICCN RecName: Full=DNA mismatch repair protein mutS gi|15619468|gb|AAL02939.1| DNA mismatch repair protein MutS [Rickettsia conorii str. Malish 7] Length = 890 Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust. Identities = 340/892 (38%), Positives = 529/892 (59%), Gaps = 33/892 (3%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 N +T MM+QY++IK + D L+ +RMGDFYE+F++DA+LAS LGI LTKRGK+ ++ Sbjct: 15 NYDVATKMMQQYLDIKFAHLDCLLLFRMGDFYEMFYEDAILASNVLGIALTKRGKNGEEE 74 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGN-KSLVRRNVVRLVTPGTL 139 I MCGVP H +Y+ KLI+ +++AIC+Q+E+P EAK RG K++V R+V R++TPGT+ Sbjct: 75 IAMCGVPYHALENYLTKLIEANYKVAICDQLETPEEAKNRGGYKAVVTRDVTRIITPGTI 134 Query: 140 TEDQLLSPTDSNYL--MAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREI 197 E+ L++ + NYL + + + + ++ ++D+ST + +++++ R+ PREI Sbjct: 135 IEENLIASAEPNYLASLVIPKNKETASLCYVDLSTSEIVVVNVPETEILNELARLKPREI 194 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 + SE S S+F+ L Q + FF + E I D+Y + + G S + Sbjct: 195 LLSENLRSSNLADSIFKQLNFRITYQVDSFFAINKCEKIILDFYKMKDIKGIGEISSSQI 254 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 A + + Y+ TQ N P + P S + ID + R NLEI+ G + SLL T Sbjct: 255 CAIGSVLEYLSLTQKQNIPHLPIPRIIKFHSYMTIDFSTRRNLEIVTNSQGGSQGSLLST 314 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +++++T GGRL ++SPLT+ KIN RL+ FF N ++ I+++LK + D+ R Sbjct: 315 LNHTVTKQGGRLLYNFLSSPLTNIAKINHRLNITEFFYSNLEIVKKIRELLKKTSDIERC 374 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN---DLPEELRGAVEKLKKLPQSLEKT 434 L+R+ + R +D+ I+ + + I +F +LP+ + ++ L L Sbjct: 375 LTRITMNRSSGRDLLSIKYTLETATIIKGVFFDAYGFNLPDFIEKIIKPLSG-DAELYNL 433 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + + +D P DGG ++ + + L + K I L+ +Y +ET I +LKI Sbjct: 434 IDETIREDAPNNLNDGGIIKHEYHPKVAQLHDLINNGKLYIEKLKDQYRKETGIDSLKIS 493 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 HNN +G FI++T+ + + K L+ K FIHRQT N R+TT EL LE+ + NA Sbjct: 494 HNNVIGLFIDITAKNVN---KILDPK--FIHRQTTVNHVRYTTAELQKLESELVNAKTLV 548 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E E + + + +IE++ L + ++ +D+ A +A E +Y +P + +F + Sbjct: 549 ISLEKELYADICSQVIEKASYLRMLASSLSGLDVFCNFAYIADEYDYVKPEFTDDLSFDI 608 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 GRHP+VEK L Q+ SK F+ NDC LS ++WL+TGPNM GKSTFLRQNA+I Sbjct: 609 VKGRHPVVEKAL-QRESKSFVYNDCHLS-----ELERIWLITGPNMAGKSTFLRQNAIIA 662 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 I+AQ+GS+VPA A IG+VDK+FSR+G+AD+L G+STFM EM+ET++IL Q+T S +I Sbjct: 663 IIAQIGSFVPAKSAKIGVVDKIFSRIGAADDLIKGQSTFMAEMLETSAILAQSTKNSLII 722 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDE+GRGT+T DG+SIAW+ +EY+H+ +CR L ATH+HELT +S L N T+ + + Sbjct: 723 LDEVGRGTSTYDGVSIAWSVLEYIHDKLKCRCLFATHYHELTVMSNFLPALQNYTIAIEE 782 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK--------LYHHN 846 S + I+FLH +I G AD SYG+ V LAGLP +VI+RA IL FEK + Sbjct: 783 SGKDILFLHNIISGAADRSYGLHVAALAGLPASVINRAEQILLKFEKTSTGKGKNILSTE 842 Query: 847 QKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ L+Y E + L K K ++ D++SP AL+ +Y +K Sbjct: 843 SNNLSLFYLEPNKTTISSKLDK-------KFSTIDPDKLSPKEALELIYELK 887 >gi|165932981|ref|YP_001649770.1| DNA mismatch repair protein MutS [Rickettsia rickettsii str. Iowa] gi|189083186|sp|B0BWY8|MUTS_RICRO RecName: Full=DNA mismatch repair protein mutS gi|165908068|gb|ABY72364.1| DNA mismatch repair protein [Rickettsia rickettsii str. Iowa] Length = 890 Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust. Identities = 339/892 (38%), Positives = 530/892 (59%), Gaps = 33/892 (3%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 N +T MM+QY++IK + D L+ +RMGDFYE+F++DA+LAS LGI LTKRGK+ ++ Sbjct: 15 NYDVATKMMQQYLDIKFAHLDCLLLFRMGDFYEMFYEDAILASNVLGIALTKRGKNGEEE 74 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGN-KSLVRRNVVRLVTPGTL 139 I MCGVP H +Y+ KLI+ +++AIC+Q+E+P EAK RG K++V R+V R++TPGT+ Sbjct: 75 IAMCGVPYHALENYLTKLIEENYKVAICDQLETPEEAKNRGGYKAVVTRDVTRIITPGTI 134 Query: 140 TEDQLLSPTDSNYL--MAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREI 197 E+ L++ + NYL + + + + ++ ++D+ST + +++++ R+ PREI Sbjct: 135 IEENLIASAEPNYLASLVIPKNKETASLCYVDLSTSEIVVVNVPETEILNELARLKPREI 194 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 + SE S S+F+ L Q + FF + + I D+Y + + G S + Sbjct: 195 LLSENLRSSNLADSIFKQLNFRITYQVDSFFAINKCKKIILDFYKMKDIKGIGEISSSQI 254 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 A + + Y+ TQ N P + P + S + ID + R NLEI+ G + SLL T Sbjct: 255 CAIGSVLEYLSLTQKQNIPHLPIPRIINFHSYMTIDFSTRRNLEIVTNSQGDSQGSLLST 314 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +++++T GGRL ++SPLT+ KIN RL+ FF N ++ I+++LK + D+ R Sbjct: 315 LNHTVTKQGGRLLYNFLSSPLTNIAKINHRLNITEFFYSNLEIVKKIRELLKKTSDIERC 374 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN---DLPEELRGAVEKLKKLPQSLEKT 434 L+R+ + R +D+ I+ + + I +F +LP+ + ++ L L Sbjct: 375 LTRITMNRSSGRDLLSIKYTLETATIIKEVFFDAYGFNLPDFIEKIIKPLSG-DAELYNL 433 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + + +D P DGG ++ + + L + K I L+ +Y +ET I +LKI Sbjct: 434 IDETIREDAPNNLNDGGIIKHEYHPKVAQLHDLINNGKLYIEKLKDQYRKETGIDSLKIS 493 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 HNN +G FI++T+ + + K L+ K FIHRQT N R+TT EL LE+ + NA Sbjct: 494 HNNVIGLFIDITAKNVN---KILDPK--FIHRQTTVNHVRYTTAELQKLESELVNAKTLV 548 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E E + + + +IE++ L + ++ +D+ A +A E +Y +P + +F + Sbjct: 549 ISLEKELYADICSQVIEKASYLRMLASSLSGLDVFCNFAYIADEYDYVKPEFTDDLSFDI 608 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 GRHP+VEK L Q+ SK F+ NDC LS ++WL+TGPNM GKSTFLRQNA+I Sbjct: 609 VKGRHPVVEKAL-QRESKSFVYNDCHLS-----ELERIWLITGPNMAGKSTFLRQNAIIA 662 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 I+AQ+GS+VPA A IG+VDK+FSR+G+AD+L G+STFM EM+ET++IL Q+T S +I Sbjct: 663 IIAQIGSFVPAKSAKIGVVDKIFSRIGAADDLIKGQSTFMAEMLETSAILAQSTKNSLII 722 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDE+GRGT+T DG+SIAW+ +EY+H+ +CR L ATH+HELT +S L N T+ + + Sbjct: 723 LDEVGRGTSTYDGVSIAWSVLEYIHDKLKCRCLFATHYHELTVMSNFLPALQNYTIAIEE 782 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK--------LYHHN 846 S + I+FLH +I G AD SYG+ V LAGLP +VI+RA IL FEK + Sbjct: 783 SGKDILFLHNIISGAADRSYGLHVAALAGLPESVINRAEQILLKFEKTSTGKGKNILSTE 842 Query: 847 QKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ L+Y E + L K K ++ D++SP AL+ +Y +K Sbjct: 843 SNNLSLFYLEPNKTTISSKLDK-------KFSTIDPDKLSPKEALELIYELK 887 >gi|157828277|ref|YP_001494519.1| DNA mismatch repair protein MutS [Rickettsia rickettsii str. 'Sheila Smith'] gi|166232132|sp|A8GRI6|MUTS_RICRS RecName: Full=DNA mismatch repair protein mutS gi|157800758|gb|ABV76011.1| DNA mismatch repair protein [Rickettsia rickettsii str. 'Sheila Smith'] Length = 886 Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust. Identities = 339/892 (38%), Positives = 530/892 (59%), Gaps = 33/892 (3%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 N +T MM+QY++IK + D L+ +RMGDFYE+F++DA+LAS LGI LTKRGK+ ++ Sbjct: 11 NYDVATKMMQQYLDIKFAHLDCLLLFRMGDFYEMFYEDAILASNVLGIALTKRGKNGEEE 70 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGN-KSLVRRNVVRLVTPGTL 139 I MCGVP H +Y+ KLI+ +++AIC+Q+E+P EAK RG K++V R+V R++TPGT+ Sbjct: 71 IAMCGVPYHALENYLTKLIEENYKVAICDQLETPEEAKNRGGYKAVVTRDVTRIITPGTI 130 Query: 140 TEDQLLSPTDSNYL--MAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREI 197 E+ L++ + NYL + + + + ++ ++D+ST + +++++ R+ PREI Sbjct: 131 IEENLIASAEPNYLASLVIPKNKETASLCYVDLSTSEIVVVNVPETEILNELARLKPREI 190 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 + SE S S+F+ L Q + FF + + I D+Y + + G S + Sbjct: 191 LLSENLRSSNLADSIFKQLNFRITYQVDSFFAINKCKKIILDFYKMKDIKGIGEISSSQI 250 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 A + + Y+ TQ N P + P + S + ID + R NLEI+ G + SLL T Sbjct: 251 CAIGSVLEYLSLTQKQNIPHLPIPRIINFHSYMTIDFSTRRNLEIVTNSQGDSQGSLLST 310 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +++++T GGRL ++SPLT+ KIN RL+ FF N ++ I+++LK + D+ R Sbjct: 311 LNHTVTKQGGRLLYNFLSSPLTNIAKINHRLNITEFFYSNLEIVKKIRELLKKTSDIERC 370 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN---DLPEELRGAVEKLKKLPQSLEKT 434 L+R+ + R +D+ I+ + + I +F +LP+ + ++ L L Sbjct: 371 LTRITMNRSSGRDLLSIKYTLETATIIKEVFFDAYGFNLPDFIEKIIKPLSG-DAELYNL 429 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + + +D P DGG ++ + + L + K I L+ +Y +ET I +LKI Sbjct: 430 IDETIREDAPNNLNDGGIIKHEYHPKVAQLHDLINNGKLYIEKLKDQYRKETGIDSLKIS 489 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 HNN +G FI++T+ + + K L+ K FIHRQT N R+TT EL LE+ + NA Sbjct: 490 HNNVIGLFIDITAKNVN---KILDPK--FIHRQTTVNHVRYTTAELQKLESELVNAKTLV 544 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E E + + + +IE++ L + ++ +D+ A +A E +Y +P + +F + Sbjct: 545 ISLEKELYADICSQVIEKASYLRMLASSLSGLDVFCNFAYIADEYDYVKPEFTDDLSFDI 604 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 GRHP+VEK L Q+ SK F+ NDC LS ++WL+TGPNM GKSTFLRQNA+I Sbjct: 605 VKGRHPVVEKAL-QRESKSFVYNDCHLS-----ELERIWLITGPNMAGKSTFLRQNAIIA 658 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 I+AQ+GS+VPA A IG+VDK+FSR+G+AD+L G+STFM EM+ET++IL Q+T S +I Sbjct: 659 IIAQIGSFVPAKSAKIGVVDKIFSRIGAADDLIKGQSTFMAEMLETSAILAQSTKNSLII 718 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDE+GRGT+T DG+SIAW+ +EY+H+ +CR L ATH+HELT +S L N T+ + + Sbjct: 719 LDEVGRGTSTYDGVSIAWSVLEYIHDKLKCRCLFATHYHELTVMSNFLPALQNYTIAIEE 778 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK--------LYHHN 846 S + I+FLH +I G AD SYG+ V LAGLP +VI+RA IL FEK + Sbjct: 779 SGKDILFLHNIISGAADRSYGLHVAALAGLPESVINRAEQILLKFEKTSTGKGKNILSTE 838 Query: 847 QKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ L+Y E + L K K ++ D++SP AL+ +Y +K Sbjct: 839 SNNLSLFYLEPNKTTISSKLDK-------KFSTIDPDKLSPKEALELIYELK 883 >gi|149174706|ref|ZP_01853331.1| DNA mismatch repair protein [Planctomyces maris DSM 8797] gi|148846400|gb|EDL60738.1| DNA mismatch repair protein [Planctomyces maris DSM 8797] Length = 866 Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust. Identities = 338/891 (37%), Positives = 521/891 (58%), Gaps = 49/891 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TPMM +Y+E+K NP +L+ +RMGDFYELF +DA +A+R LGITLT R K IP Sbjct: 6 KKLTPMMERYLEVKRQNPGTLLLFRMGDFYELFHEDAEIAARILGITLTSRDKTSSNPIP 65 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M G P H+ ++Y+ KLI G+R +IC+Q+E P +AK +V+R V R+VTPGTLT+D Sbjct: 66 MAGFPHHSLDNYLYKLIHAGYRASICDQVEDPKKAK-----GMVKREVTRVVTPGTLTDD 120 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK 202 LL P ++N+L ++ ++ +AW+++STG F S + + L+ ++ RI P E IF+E Sbjct: 121 ALLDPHENNFLASIYFGKSNIGLAWLELSTGRFLTSNTTAEHLVDELARIHPAECIFAE- 179 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK-TAAA 261 + ++ L + +P F SE R+ D++ T++ F + TAA Sbjct: 180 --GNTALQNAVGHLDTMLTERPPWSFAEGESEKRLLDHFGTKTLEGFNLEAGTPSITAAG 237 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 A + Y++ TQ P I E + L ID A R +LE+ RT+ G RE SL+ +D Sbjct: 238 ALLEYVQDTQKSAIPHINQIEPYERGDRLLIDEATRRSLELTRTIREGKREGSLISVLDE 297 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 ++T G RL + IA+PLT ++I RLD++ QNP+L +++ L + D+ R +R Sbjct: 298 TVTSMGARLLTDWIANPLTSLSQIERRLDAVEELSQNPVLCTEVREQLAKTYDLQRLTAR 357 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE-------- 432 + GR +D++ + L L L +L G + +L QSLE Sbjct: 358 IATGRASARDLSFLAQ---------TLALLPKLKAKLSG---RKAELLQSLEADIDLCAE 405 Query: 433 --KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 + +M+ +D P +GG +R G LDE RSL K IA + + +E I N Sbjct: 406 VRSDIETMIIEDPPLTLNEGGVIRPGFSEELDELRSLSKGGKEWIAGYRNEESERIGIPN 465 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ +N GY++EV+++ A+ + D +I +QT+ N R+ T EL + E ++ A Sbjct: 466 LKVGYNKVFGYYLEVSAAHAAKVP------DHYIRKQTLKNQERYITPELKEYEEKVLKA 519 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 + A+ +E F+ L + +++ ++++A ID+ LA LA Y RP + Sbjct: 520 EDRAVELEQSMFDELRERVAKEAPRTQKTAEILAQIDVLFGLAHLATHAGYTRPEMTEEP 579 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 +++ RHP++++ Q S F+ ND L P G++ ++TGPNM GKST++RQ Sbjct: 580 VLDIRESRHPVLDRL---QPSGEFVPNDVLLGEP----YGRVQIITGPNMAGKSTYIRQA 632 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 AL+ +MAQ+GS++PAS A IGI D++F+RVG++D L+ G+STFMVEM E A ILN A+ + Sbjct: 633 ALLTLMAQIGSFIPASEARIGIADRIFARVGASDELSKGQSTFMVEMTEAARILNSASER 692 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S VILDEIGRGT+T DG+S+AW+ E+LH+ + R L ATH+HELT+L+++LK+ N + Sbjct: 693 SLVILDEIGRGTSTYDGISLAWSMTEFLHDKIKARTLFATHYHELTELTQTLKQASNWNV 752 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM 850 V + + I+FLHK++ G A+ SYGI V +LAG+P+ VI RA IL T EK H ++ Sbjct: 753 AVHEQDGEIVFLHKIVEGSANKSYGIHVARLAGIPDQVIQRANQILSTLEK-DHIDETGQ 811 Query: 851 RLYYPEIQTKESKNNLS---KNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P I K S LS +++I+ LN+DEM+PL AL+ LY ++ Sbjct: 812 TTIPPRIDRKSSHQQLSLFGNTAHPVLDEIRDLNVDEMTPLAALEELYRIR 862 >gi|290990159|ref|XP_002677704.1| predicted protein [Naegleria gruberi] gi|284091313|gb|EFC44960.1| predicted protein [Naegleria gruberi] Length = 846 Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust. Identities = 357/867 (41%), Positives = 514/867 (59%), Gaps = 88/867 (10%) Query: 29 MRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPV 88 M QY +IK + D L+ +RMGDFYE+FF+DA+ AS+ L ITLTKRGKHLG+DIPMCG+P Sbjct: 1 MNQYFKIKEKHSDYLLLFRMGDFYEIFFEDAVKASQVLHITLTKRGKHLGQDIPMCGIPH 60 Query: 89 HTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPT 148 H + Y+QKLIK G +AIC+Q+E P EAKK NK +V R + RLVTPGTLTED+ L + Sbjct: 61 HALDAYLQKLIKNGVVVAICDQVEDPAEAKK--NKKIVERQITRLVTPGTLTEDRFLEAS 118 Query: 149 DSNYLMAVA-----------RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREI 197 + NYL A+ + ++W+++STG F + L S+++R+ P EI Sbjct: 119 EHNYLAAIGLPEKFSTNDENHKEQQVTLSWVELSTGEFNYLNCSFGNLQSELLRLSPSEI 178 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYY-NITTVDTFGSFSQVE 256 + S FE + V + + +V S A++ N +D S+S V Sbjct: 179 LIP----------SNFEYVFKVRLEEYHVTLRKPASYQHYANFIQNHFKLDKLSSYSGV- 227 Query: 257 KTAAAAAISYIKKTQMVNK------------PTIGYPEREDIQSTLFIDSAARSNLEILR 304 + I I Q+V PT+ PE+ ++ + ID A R +LE+ R Sbjct: 228 ----SYLIILISHYQIVGHNYMWNDFGLCQMPTLSTPEKFKMERNMSIDLATRKSLELTR 283 Query: 305 TLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPI 364 TLSGSR+ SLL ID +T G RL + R+ASPL ++I RLD + + ++ +LI+ I Sbjct: 284 TLSGSRKGSLLSIIDKCVTAPGARLLSNRLASPLAVPSEIEDRLDCVEYLTEDKVLIDQI 343 Query: 365 QKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKND------LPEELR 418 + LK+ D+ R++ RL + RG PKD+ + + + + L+N+ LP L Sbjct: 344 RDYLKNCYDIERAIQRLSMSRGSPKDLFTVAATVSQCQQLKEIILENEARRHTKLPTVLA 403 Query: 419 GAVEKLKKLPQ--SLEKTLSSMLS-DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRII 475 VE+L Q ++ + LS+M +DLPT +GGF+R G LDE L S+ +I Sbjct: 404 KVVEELNSDVQLEAMNEILSAMKEYEDLPTSVSEGGFIRVGYSTELDEWLKLSQHSETLI 463 Query: 476 ASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRF 535 LQ +Y ++T I LKIK+NN +GYF+E+ SS + L K+ F H+QTM+N+ RF Sbjct: 464 QDLQKEYKDKTGISTLKIKNNNVMGYFVEIPSSQRDRI---LPFKE-FSHKQTMTNVVRF 519 Query: 536 TTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAIL 595 T +L +L+ ++ A A+ +EL+ F L ++ +++L +++Q IA ID+ +LA+L Sbjct: 520 KTDKLEELQEKLGKAQQEAIDMELKIFFQLQKKLLIIAKTLLSSAQSIASIDLYSSLALL 579 Query: 596 AKEQNYCRPIIDNSTNFI----------------VKDGRHPIVEKTLKQQSSKPFIANDC 639 A+E++Y RP N T FI ++ GRHPIVE +Q F++NDC Sbjct: 580 ARERSYTRP---NVTPFIESEELEKSKKKVPILNIQKGRHPIVEYA-QQNVGLTFVSNDC 635 Query: 640 DLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSR 699 + N +L LLTG NM GKST+LRQNALI+I+AQMG +VPA A +VDK+FSR Sbjct: 636 TMF----NNENRLMLLTGANMAGKSTYLRQNALIIILAQMGCFVPAQKAEFMVVDKIFSR 691 Query: 700 VGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLH 759 VG++DNLA+ +STFMVEM+ETA+ILNQATN+SFVI+DE+GRGT+ L+GLSIA A I++LH Sbjct: 692 VGASDNLANDQSTFMVEMVETANILNQATNKSFVIMDELGRGTSVLEGLSIATAVIQHLH 751 Query: 760 ETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS-DSNEGIIFLHKVIP--------GIA 810 +CR L ATHFHEL + +K LK L+V + + I F +K++P + Sbjct: 752 NKIQCRALFATHFHELIEKAKELKFMKPYKLEVRVNKSNNITFTYKIVPDEIIDGQSAAS 811 Query: 811 DH-SYGIQVGKLAGLPNTVISRAYDIL 836 H SY IQV KLAG+P+ V A IL Sbjct: 812 THSSYAIQVAKLAGVPSIVTDEAEKIL 838 >gi|78222636|ref|YP_384383.1| DNA mismatch repair protein MutS [Geobacter metallireducens GS-15] gi|123572094|sp|Q39VR6|MUTS_GEOMG RecName: Full=DNA mismatch repair protein mutS gi|78193891|gb|ABB31658.1| DNA mismatch repair protein MutS [Geobacter metallireducens GS-15] Length = 872 Score = 603 bits (1556), Expect = e-170, Method: Compositional matrix adjust. Identities = 347/893 (38%), Positives = 518/893 (58%), Gaps = 48/893 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL-GKDIPMC 84 TPMMRQY+EIK+ +PDS++F+R+GDFYE+F DDA+ ASR L ITLT RGK G D+P+C Sbjct: 5 TPMMRQYLEIKADHPDSILFFRLGDFYEMFLDDAVKASRILDITLTSRGKGGDGADVPLC 64 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H+A YI KLI+ G ++AICEQ+E P + K +V+R VV++VTPG + E + Sbjct: 65 GVPYHSAAPYIAKLIEAGEKVAICEQVEDP-----KTTKGIVKRQVVKVVTPGLVVESES 119 Query: 145 LSPTDSNYLMAVARIRT-EWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEK 202 LSP ++N+L+++ W +A++DISTG F+++ HD ++ +PREI+ Sbjct: 120 LSPKENNFLLSLFDGNNGRWGVAYLDISTGEFRLTEVEGHDAAWGEVACANPREILVP-- 177 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVF-------FDHSISESRIADYYNITTVDTFGSFSQV 255 A ++ G +A F +D +E I +++ + + G Sbjct: 178 ----ASFRENMRGEGRGDLAAGRTFTYVDDWVYDRDYTERLIKNHFGVASPGALGCDGYA 233 Query: 256 EK-TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQS 313 E AAAA + Y+++TQ I Q L +D A R NLE+ TLS G R S Sbjct: 234 EGLQAAAAVLHYLQETQKGRVDHIRELRAYRTQEFLVLDEATRRNLELTATLSEGKRRGS 293 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T GGR + I PL KI R D++ +P L I++ L+ D Sbjct: 294 LLGLLDRTATAMGGRKLRQWINYPLVIVEKIKERQDAVGELANDPALRAGIREALEGVYD 353 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSL 431 + R R+ + KD+ ++ ++ +L+L L EL ++ + ++ + + Sbjct: 354 LERLNGRISLASSGAKDLVALKASLQRIPPLLSLLESTGTALLGELCKGIDPMDEVAELI 413 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + + DD P R+GG + DG A LDE R++ + K IA L+ K T I +L Sbjct: 414 GRGIV----DDPPFVLREGGIIADGYHAELDELRAISREGKGFIARLEAKEKARTGITSL 469 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 KI++N GY+IEVT ++ + +D +I RQT++N RF T EL + E ++ A Sbjct: 470 KIRYNKVFGYYIEVTKTNLGSIPED------YIRRQTLANAERFITPELKEYEEKVLGAE 523 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + +E F+ + ++ + E L + +A +D+ +LA +A E+NYCRP ID+ Sbjct: 524 ERIVELEYSLFQQIRQSVAAEGERLARTADRLATLDVLASLADVAHERNYCRPGIDDGDT 583 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 + +GRHP+VE S+ F+ ND L D +L ++TGPNM GKSTF+RQ A Sbjct: 584 LSISEGRHPVVEAL---NVSERFVPNDVLL----DNGENQLVIITGPNMAGKSTFMRQVA 636 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LIV+MAQ+GS+VPA+ A IG+VD++F+RVG++DNLA G+STFMVEM+ETA+IL AT +S Sbjct: 637 LIVLMAQLGSFVPATEARIGVVDRIFTRVGASDNLARGQSTFMVEMMETAAILRNATPKS 696 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRC--RGLLATHFHELTDLSKSLKRFHNAT 789 V+LDEIGRGT+T DG+SIAWA EYLH+T RC + L ATH+HELT+L+ + + N Sbjct: 697 LVVLDEIGRGTSTFDGVSIAWAVAEYLHDTARCAAKTLFATHYHELTELAVTRGKIKNCN 756 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 + V + N+ +IFL K++ G A HSYGIQV +LAGLP VI RA +IL EK + Sbjct: 757 VAVKEWNDQVIFLRKIVEGGASHSYGIQVARLAGLPIEVIERAKEILHNLEKGEYVEGGV 816 Query: 850 MRLYYPE-IQTKESKNNLS---KNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 R+ + +S LS + D L +++ LN+ ++PL AL L +K Sbjct: 817 PRISRGKRAAAPKSSPQLSLFEQGDDLLRQRLTGLNIAALTPLEALNILDELK 869 >gi|238650746|ref|YP_002916599.1| DNA mismatch repair protein [Rickettsia peacockii str. Rustic] gi|238624844|gb|ACR47550.1| DNA mismatch repair protein [Rickettsia peacockii str. Rustic] Length = 890 Score = 601 bits (1550), Expect = e-169, Method: Compositional matrix adjust. Identities = 337/892 (37%), Positives = 527/892 (59%), Gaps = 33/892 (3%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 N +T MM+QY++IK + D L+ +RMGDFYE+F++DA+LAS LGI LTK GK+ ++ Sbjct: 15 NYDVATKMMQQYLDIKFAHLDCLLLFRMGDFYEMFYEDAILASNVLGIALTKHGKNGEEE 74 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGN-KSLVRRNVVRLVTPGTL 139 I MCGVP H +Y+ KLI+ +++AIC+Q+E+P EAK RG K++V R+V R++TPGT+ Sbjct: 75 IAMCGVPYHALENYLTKLIEENYKVAICDQLETPEEAKNRGGYKAVVTRDVTRIITPGTI 134 Query: 140 TEDQLLSPTDSNYL--MAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREI 197 E+ L++ + NYL + + + + ++ ++D+ST + +++++ R+ PREI Sbjct: 135 IEENLIASAEPNYLASLVIPKNKETASLCYVDLSTSEIVVVNVPETEILNELARLKPREI 194 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 + SE S S+F+ L Q + F + + I D+Y + + G S + Sbjct: 195 LLSENLRSSNLADSIFKQLNFRITYQVDSVFAINKCKKIILDFYKMKDIKGIGEISSSQI 254 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 A + + Y+ TQ N P + P + S + ID + R NLEI+ G + SLL T Sbjct: 255 CAIGSVLEYLSLTQKQNIPHLPIPRIINFHSYMTIDFSTRRNLEIVTNSQGGSQGSLLST 314 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +++ +T GGRL ++SPLT+ KIN RL+ FF N ++ I+++LK + D+ R Sbjct: 315 LNHMVTKQGGRLLYNFLSSPLTNIAKINHRLNITEFFYSNLEIVKKIRELLKKTSDIERC 374 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN---DLPEELRGAVEKLKKLPQSLEKT 434 L+R+ + R +D+ I+ + + I +F +LP+ + ++ L L Sbjct: 375 LTRITMNRSSGRDLLSIKYTLETATIIKGVFFDAYGFNLPDFIEKIIKPLSG-DAELYNL 433 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + + +D P DGG ++ + + L + K I L+ +Y +ET I +LKI Sbjct: 434 IDETIREDAPNNLNDGGIIKHEYHPKVAQLHDLINNGKLYIEKLKDQYRKETGIDSLKIS 493 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 HNN +G FI++T+ + + K L+ K FIHRQT N R+TT EL LE+ + NA Sbjct: 494 HNNVIGLFIDITAKNVN---KILDPK--FIHRQTTVNHVRYTTAELQKLESELVNAKTLV 548 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E E + + + +IE++ L + ++ +D+ A +A E +Y +P + +F + Sbjct: 549 ISLEKELYADICSHVIEKASYLRMLANSLSGLDVFCNFAYIADEYDYVKPEFTDDLSFDI 608 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 GRHP+VEK L Q+ SK F+ NDC LS ++WL+TGPNM GKSTFLRQNA+I Sbjct: 609 VKGRHPVVEKAL-QRESKSFVYNDCHLS-----ELERIWLITGPNMAGKSTFLRQNAIIA 662 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 I+AQ+GS+VPA A IG+VDK+FSR+G+AD+L G+STFM EM+ET++IL Q+T S +I Sbjct: 663 IIAQIGSFVPAKSAKIGVVDKIFSRIGAADDLIKGQSTFMAEMLETSAILAQSTKNSLII 722 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDE+GRGT+T DG+SIAW+ +EY+H+ +CR L ATH+HELT +S L N T+ + + Sbjct: 723 LDEVGRGTSTYDGVSIAWSVLEYIHDKLKCRCLFATHYHELTVMSNFLPALQNYTIAIEE 782 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK--------LYHHN 846 S + I+FLH +I G AD SYG+ V LAGLP +VI+RA IL FEK + Sbjct: 783 SGKDILFLHNIISGAADRSYGLHVAALAGLPASVINRAEQILLKFEKTSTGKGKNILSTE 842 Query: 847 QKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ L+Y E + L K K ++ D++SP AL+ +Y +K Sbjct: 843 SNNLSLFYLEPNKTTISSKLDK-------KFSTIDPDKLSPKEALELIYELK 887 >gi|254796716|ref|YP_003081552.1| DNA mismatch repair protein MutS [Neorickettsia risticii str. Illinois] gi|254589940|gb|ACT69302.1| DNA mismatch repair protein MutS [Neorickettsia risticii str. Illinois] Length = 815 Score = 601 bits (1550), Expect = e-169, Method: Compositional matrix adjust. Identities = 325/816 (39%), Positives = 486/816 (59%), Gaps = 31/816 (3%) Query: 27 PMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGV 86 P M++Y+E++ PD+++FYR+GDFYE+FF+DA S LG+ LT+RG + GKDIPMCGV Sbjct: 7 PAMKRYLEVRCQYPDAVIFYRVGDFYEMFFEDAREVSALLGLHLTRRGTYKGKDIPMCGV 66 Query: 87 PVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLS 146 PV + YI KL+K+G ++AICEQ+E+ EAKKRG ++VRR+VVRLVTPGTLTED LL Sbjct: 67 PVSSYEVYINKLVKLGRKVAICEQLETAEEAKKRGATAIVRRDVVRLVTPGTLTEDNLLV 126 Query: 147 PTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSH 206 ++NYL VA + E IAW+DIST ++++ L S +++ +P+E++ + Sbjct: 127 SGENNYLFCVAPGKNEIGIAWLDISTKKIVFTSASPASLESYLVKTEPKEVLLPDT--ID 184 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISY 266 +E + L E +PN F +E+ + +YN+ + + S E A A I+Y Sbjct: 185 SELRKLIEQHNIHITRRPNNLFQFEYAENELRGFYNVLQLGFMDARSPCEIVACGALIAY 244 Query: 267 IKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAG 326 + TQM + +P+R + L +D++ LE++ + + + SLL+ ID + T G Sbjct: 245 ARATQMGELKQLEFPKRYERGHYLELDASTVRGLELIESQTPGEKNSLLQVIDQTCTAGG 304 Query: 327 GRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRG 386 RL I SPL +I TR D + FF L ++ L + PD R+LSR+ + RG Sbjct: 305 KRLLKSYIVSPLISVEEIQTRQDRVEFFFIQEELRKKVRTELSNIPDAERALSRIALNRG 364 Query: 387 EPKDIAVIRDGIRSGINI---LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 EP D + +++ + + + FLK+D +R +K + +E ++ L Sbjct: 365 EPIDCLAVLSCMKASLLLAEHFSSFLKDDY---IRSIYDKCAPNDELMETLRTAFL---- 417 Query: 444 PTFKR--DGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 PT R DG FL L E L + ++ L + Y T I +LK+ NN +GY Sbjct: 418 PTSNRKVDGPFLDPTYHPKLLELNMLSTNADVVMNDLLITYKRNTGINSLKLGKNNLIGY 477 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 ++EV SA VL + FIHRQ++ N R+TTLEL +LE +I A + +ELE Sbjct: 478 YVEV-PKSAPVLDSKV-----FIHRQSLLNNIRYTTLELQNLEAQIAKANENYRKLELEL 531 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 F L I+ L +A +D+ ++ A +A ++ Y RP +DNS + GRHP Sbjct: 532 FRELCEKILASESPLKEMIAAMAELDVIVSFAEIAVQRKYVRPQVDNSNELRISGGRHPF 591 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE+ F+ ND + + ++ +LTGPNM GKST+LRQNALI ++AQMGS Sbjct: 592 VEQV------NAFVPNDLAFT-----SEERVCVLTGPNMAGKSTYLRQNALITVLAQMGS 640 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA AHIG+VD++FSR+G++DN+A G+STFMVEM+ETA+I+N AT +S VILDE+GRG Sbjct: 641 FVPADSAHIGVVDRVFSRIGASDNIARGKSTFMVEMMETANIVNNATCRSLVILDEVGRG 700 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 T+TLDG+SIA A +EYLH++ C+ + ATH++EL DL L R +++V + I Sbjct: 701 TSTLDGISIAQAVLEYLHDSVNCKTIFATHYNELCDLESKLPRMKCYSIEVKRWRDEIFL 760 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILK 837 ++KV+PG D SYGI L+G+P ++I RA +I K Sbjct: 761 MYKVVPGRGDKSYGIHTAMLSGIPESIIRRATEIAK 796 >gi|88608613|ref|YP_506224.1| DNA mismatch repair protein MutS [Neorickettsia sennetsu str. Miyayama] gi|88600782|gb|ABD46250.1| DNA mismatch repair protein MutS [Neorickettsia sennetsu str. Miyayama] Length = 815 Score = 601 bits (1549), Expect = e-169, Method: Compositional matrix adjust. Identities = 322/816 (39%), Positives = 482/816 (59%), Gaps = 31/816 (3%) Query: 27 PMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGV 86 P M++Y+E++ PD++VFYR+GDFYE+FF+DA S LG+ LT+RG + GKDIPMCGV Sbjct: 7 PAMKRYLEVRCQYPDAVVFYRVGDFYEMFFEDAREVSHLLGLHLTRRGTYKGKDIPMCGV 66 Query: 87 PVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLS 146 PV + YI KL+K+G ++AICEQ+E+ EAKKRG ++VRR+VVRLVTPGTLTED LL Sbjct: 67 PVSSCEVYINKLVKLGRKVAICEQLETAEEAKKRGATAIVRRDVVRLVTPGTLTEDNLLV 126 Query: 147 PTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSH 206 ++NYL+ VA + E +AW+DIST +++N L S + +I+P+E++ + Sbjct: 127 SGENNYLLCVAPGKNEIGLAWLDISTKKIVFTSANPASLESYLAKIEPKEVLLPDA--ID 184 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISY 266 +E + + E +PN F + + + +YN+ + + S E A A I+Y Sbjct: 185 SELRKVIEQHNIHITRRPNNLFQFDYAANELRGFYNVLQLGFMDARSPCEIVACGALIAY 244 Query: 267 IKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAG 326 + TQM + +P+R + L +D++ LE++ + + + SLL+ ID + T G Sbjct: 245 ARATQMGELKRLEFPKRYEKGYYLALDASTIRGLELIESQTPGEKNSLLQVIDQTCTAGG 304 Query: 327 GRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRG 386 RL I SPL +I R D + FF L ++ L + PD R+LSR+ + RG Sbjct: 305 KRLLKSYIVSPLISVEEIQARQDKVEFFFIQEELRKKVRTELANIPDAERALSRIALNRG 364 Query: 387 EPKDIAVIRDGIRSGI---NILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 EP D + +RS + + FL+N G + + ++ + ++ + L Sbjct: 365 EPIDCLAVHSCMRSSLLLAECFSAFLEN-------GYIRSIYDKCAPDDELMETLRTAFL 417 Query: 444 PTFKR--DGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 PT R DG FL L E L + +I L Y T I +LK+ NN +GY Sbjct: 418 PTSNRKVDGPFLDPTHHPKLLELNRLSTNADVVINDLLNTYKRNTGINSLKLGKNNLIGY 477 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 ++EV S+ L + FIHRQ++ N R+TTLEL +LE +I A + +ELE Sbjct: 478 YVEVPKSAP------LLDSEVFIHRQSLLNNIRYTTLELQNLEAQIAKANENYRKLELEL 531 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 F L I+ L IA +D+ + A +A ++ Y RP +DNS + GRHP Sbjct: 532 FRELCGKILASEGPLKEMIAAIAELDVIASFAEIAVQRKYVRPQVDNSNELRISGGRHPF 591 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE+ F+ ND + ++ ++ +LTGPNM GKST+LRQNALI I+AQMGS Sbjct: 592 VEQV------NAFVPNDLAFT-----SAERVCVLTGPNMAGKSTYLRQNALITILAQMGS 640 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA AHIG+VD++FSR+G++DN+A G+STFMVEM+ETA+I+N AT +S VILDE+GRG Sbjct: 641 FVPADSAHIGVVDRVFSRIGASDNIAMGKSTFMVEMMETANIVNNATCRSLVILDEVGRG 700 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 T+TLDG+SIA A +EYLH++ C+ + ATH++EL DL L R +++V + ++ Sbjct: 701 TSTLDGISIAQAVLEYLHDSVNCKTIFATHYNELCDLESKLPRMKCYSIEVKRWRDEVLL 760 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILK 837 ++K++PG D+SYGI L+G+P +I RA +I K Sbjct: 761 MYKIVPGRGDNSYGIHTAMLSGIPEAIIRRATEIAK 796 >gi|239947887|ref|ZP_04699640.1| DNA mismatch repair protein MutS [Rickettsia endosymbiont of Ixodes scapularis] gi|239922163|gb|EER22187.1| DNA mismatch repair protein MutS [Rickettsia endosymbiont of Ixodes scapularis] Length = 889 Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust. Identities = 339/892 (38%), Positives = 529/892 (59%), Gaps = 33/892 (3%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 N +T MM+QY++IK + D L+ +RMGDFYE+F++DA+LAS LGI LTKRGK+ ++ Sbjct: 14 NYDVATKMMQQYLDIKFAHLDCLLLFRMGDFYEMFYEDAILASNVLGIALTKRGKNGEEE 73 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGN-KSLVRRNVVRLVTPGTL 139 I MCGVP H +Y+ KLI+ +++AIC+Q+E+P EAK RG K++V R+V R++TPGT+ Sbjct: 74 IAMCGVPYHALENYLTKLIEENYKVAICDQLETPEEAKNRGGYKAVVTRDVTRIITPGTI 133 Query: 140 TEDQLLSPTDSNYL--MAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREI 197 E+ L++ + NYL + + + + ++ ++D+ST + +++++ R+ PREI Sbjct: 134 IEENLIASAEPNYLASLVIPKNKETASLCYVDLSTSENFVVNVPEAEILNELARLKPREI 193 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 + SE S S+F+ L Q + FF + I D+Y + + G S + Sbjct: 194 LLSENLRSSNLADSIFKQLNFRITYQVDSFFAVNKCGKIILDFYKMKDIKGVGEISSSQI 253 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 A + + Y+ TQ N P + P + S + ID A R NLEI+ G + SLL T Sbjct: 254 CAIGSILEYLSLTQKQNIPHLPIPRIINFHSYMTIDFATRRNLEIVTNSQGGSKGSLLST 313 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +++++T GGRL ++SPLTD KIN RL+ FF N ++ +++LK + D+ R Sbjct: 314 LNHTVTKQGGRLLYNFLSSPLTDIAKINHRLNITEFFYSNLEIVKRTRELLKKTSDIERC 373 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN---DLPEELRGAVEKLKKLPQSLEKT 434 L+R+ + R +D+ I+ + + I +F +LP+ + ++ L + L Sbjct: 374 LTRITMNRSSGRDLLSIKYTLETATIIKGVFFDAYGFNLPDFIEKIIKPLSG-NEELYNL 432 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + + ++ P +GG ++ + + L + K I L+ +Y +ET I +LKI Sbjct: 433 IDETIRENAPNNLNEGGIIKHEYHPKVAQLHDLINNGKLHIEKLKEQYRKETGIDSLKIS 492 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 HNN +G FI++T+ + + + + +FIHRQT N R+TT EL LE+ + NA Sbjct: 493 HNNVIGLFIDITAKNINKI-----TDSKFIHRQTTVNNVRYTTAELQKLESDLVNAKTLV 547 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E E + + + +IE++ L + ++ +D+ A +A E +Y + + +F + Sbjct: 548 ISLEKELYADICSQVIEKASYLRILASSLSGLDVFCNFAYIADEYDYVKAEFTDDLSFDI 607 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 GRHP+VEK L QQ SK F+ NDC LS ++WL+TGPNM GKSTFLRQNA+I Sbjct: 608 VKGRHPVVEKAL-QQESKSFVYNDCHLS-----ELERIWLITGPNMAGKSTFLRQNAIIA 661 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 I+AQ+GS+VPA A IG+VDK+FSR+G+AD+L G+STFM EM+ET++IL Q+T S +I Sbjct: 662 IIAQIGSFVPAKSAKIGVVDKIFSRIGAADDLIKGQSTFMAEMLETSAILAQSTKNSLII 721 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDE+GRGT+T DG+SIAW+ +EY+H+ +CR L ATH+HELT +S L N T+ + + Sbjct: 722 LDEVGRGTSTYDGVSIAWSVLEYIHDKLKCRCLFATHYHELTVMSNFLPALQNYTIAIEE 781 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 S + I+FLH +I G AD SYG+ V LAGLP +VI+RA IL FEK K+ Sbjct: 782 SGKDILFLHNIISGAADRSYGLHVAALAGLPASVINRAEQILLKFEKTSTGKGKN----- 836 Query: 855 PEIQTKESKN----NLSKNDKLFV----EKIKCLNLDEMSPLTALKTLYAVK 898 I + ES N NL N EK + ++ D++SP AL+ +Y +K Sbjct: 837 --ILSTESNNLSLFNLEPNKTTISNKLDEKFRTIDPDKLSPKEALELIYELK 886 >gi|157825535|ref|YP_001493255.1| DNA mismatch repair protein MutS [Rickettsia akari str. Hartford] gi|166232129|sp|A8GMX2|MUTS_RICAH RecName: Full=DNA mismatch repair protein mutS gi|157799493|gb|ABV74747.1| DNA mismatch repair protein [Rickettsia akari str. Hartford] Length = 886 Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust. Identities = 341/892 (38%), Positives = 529/892 (59%), Gaps = 33/892 (3%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 N +T MM+QY++IK + D L+ +RMGDFYE+F+DDA+LAS LGI LTKRGK+ ++ Sbjct: 11 NYDVATKMMQQYLDIKFAHLDCLLLFRMGDFYEMFYDDAILASNVLGIALTKRGKNGEEE 70 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGN-KSLVRRNVVRLVTPGTL 139 I MCGVP H HY+ KLI+ +++AIC+Q+E+P +AK RG K++V R+V R++TPGT+ Sbjct: 71 IAMCGVPYHALEHYLTKLIEANYKVAICDQLETPEDAKNRGGYKAVVTRDVTRIITPGTI 130 Query: 140 TEDQLLSPTDSNYL--MAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREI 197 E+ L++ + NYL + + + + +I ++D+ST + +++++ R+ PREI Sbjct: 131 IEENLIASAEPNYLASLVIPQNKETASICYVDLSTSEIFVVNVPEAEILNELARLKPREI 190 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 + SE S S+F+ L Q + F + + I D+Y + + G S + Sbjct: 191 LVSENLRSSNLADSIFKQLNFRITYQVDSCFAINKCKKIILDFYKMKDIKGIGEISSSQI 250 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 + + Y+ TQ N P + P + S + ID + R NL I+ GS SLL T Sbjct: 251 CVIGSILEYLSLTQKQNIPHLPIPRIINFHSYMTIDFSTRHNLAIVINSQGSSNGSLLNT 310 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 I++++T GGRL ++SPLT+ KIN RL+ FF N ++ I+++LK + D+ R Sbjct: 311 INHTVTKQGGRLLYNFLSSPLTNIAKINHRLNITEFFYSNLEIVQRIRELLKKTSDIERC 370 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN---DLPEELRGAVEKLKKLPQSLEKT 434 L+R+ + R D+ I+ + + I +F +LP+ + ++ L L Sbjct: 371 LTRITMNRSSGCDLLSIKYTLEAATIIKGVFFDAYGFNLPDFIEKIIKPLAG-DAELYHL 429 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + + D+P DGG ++ + + L + K I L+ +Y +ET I +LKI Sbjct: 430 IDESIRADVPNNLNDGGIIKHEYHPKVAQLHDLINNRKLHIEKLKDQYRKETGIDSLKIS 489 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 HNN +G FI++T+ + + K L+ K FIHRQT N R+TT EL LE+ + NA Sbjct: 490 HNNVIGLFIDITAKNVN---KILDPK--FIHRQTTVNNVRYTTTELQKLESELVNAKTLV 544 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E + + + +I+++ L + ++++D+ A +A E +Y +P + + +F + Sbjct: 545 ISLEKALYADICSQVIKKAAYLRMLASSLSVLDVFCNFAYIADEYDYVKPELTDDLSFDI 604 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 GRHP+VEK L Q+ SK F+ NDC LS ++WL+TGPNM GKSTFLRQNA+I Sbjct: 605 VKGRHPVVEKVL-QRESKSFVYNDCHLS-----ELKRIWLITGPNMAGKSTFLRQNAIIA 658 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 I+AQ+GS+VPA A IG+VDK+FSR+G+AD+L G+STFM EM+ET++IL Q+T S +I Sbjct: 659 IIAQIGSFVPAKSAKIGVVDKIFSRIGAADDLIKGQSTFMAEMLETSAILAQSTKNSLII 718 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDE+GRGT+T DG+SIAW+ +EY+H+ +CR L ATH+HELT ++ L N T+ + + Sbjct: 719 LDEVGRGTSTYDGVSIAWSVLEYIHDKLKCRCLFATHYHELTVMNNFLPALQNYTIAIEE 778 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 S + I+FLH +I G AD SYGI V LAGLP +VI+RA IL FEK K+ Sbjct: 779 SGKDILFLHNIISGAADRSYGIHVAALAGLPASVINRAEQILLKFEKTSTGKGKN----- 833 Query: 855 PEIQTKESKN----NLSKNDKL----FVEKIKCLNLDEMSPLTALKTLYAVK 898 I + ES N NL N E+ + ++ D++SP AL+ +Y +K Sbjct: 834 --ILSTESNNLRLFNLEHNQTTIRSKLEEQFRTIDPDQLSPKAALELIYELK 883 >gi|87310334|ref|ZP_01092464.1| DNA mismatch repair protein [Blastopirellula marina DSM 3645] gi|87286833|gb|EAQ78737.1| DNA mismatch repair protein [Blastopirellula marina DSM 3645] Length = 873 Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust. Identities = 352/885 (39%), Positives = 517/885 (58%), Gaps = 38/885 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD-IPMC 84 TPMM+QY+E K + D+++F+RMGDFYELF DDA A+R LG+TLT R K G++ PM Sbjct: 4 TPMMQQYLEAKGVCGDAILFFRMGDFYELFNDDAKTAARVLGMTLTSRDK--GENATPMA 61 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G P H ++Y+ KLI +G+R+AIC+Q+E+P EAK +VRR + R+VTPGTLT+D L Sbjct: 62 GFPHHQLDNYLGKLIHLGYRVAICDQVENPKEAK-----GIVRREITRIVTPGTLTDDAL 116 Query: 145 LSPTDSNYLMAVA-----RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 L P +SNYL AVA E +AW+++STG F RL + RI P E + Sbjct: 117 LEPRESNYLAAVALPGKKETAAEVGVAWVEMSTGRFFSGVFPTARLADQLARIAPSECLV 176 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG--SFSQVEK 257 E+ S+ L E++ + +P F + + ++ T++ FG Q+ Sbjct: 177 PEE--SNVVPTHLHESI--LMTYRPAWAFGKEGAGEVLKRHFETMTLEGFGFGDQDQLAV 232 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLK 316 AA A + Y+++TQ + I STL ID A R +LE+ RT+ G R+ SLL Sbjct: 233 CAAGAVLEYLEETQRTSLLHIERLTPYRASSTLEIDEATRRSLELTRTMRDGRRDGSLLA 292 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 ID +T G RL + +++PLTD +I+ RLD + + P L +++ LK D+ R Sbjct: 293 AIDRCVTVMGSRLLGDWLSNPLTDLEEIHRRLDGVEELVLEPALARDLRESLKEVYDLER 352 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 L+R+ GR P+D+ I + +I + +E+ L + L+ Sbjct: 353 LLARVMTGRASPRDLGYICKTLERLPHIKAKITSRR--SSMLRLLEERLDLCSEIRSQLA 410 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 L D LP RDGG + G +A LD R L K+ IA Q + E T I NLK+ N Sbjct: 411 EALDDSLPLSPRDGGVICTGFNADLDHLRGLAAGGKQWIAEYQKQEIERTGIANLKVGFN 470 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY++EVT+ + + D +I +QT+ N R+ T EL + E ++ +A A Sbjct: 471 KVFGYYLEVTNVNRERIPTD------YIRKQTLKNAERYITPELKEYEEKVLSADEKAKD 524 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E E F L +A+ ++ + + V+A +D ++LA LA+E+NYCRP + S + D Sbjct: 525 LEYELFGQLRDAVQLDAKRIQQTADVLANLDCLLSLAELARERNYCRPQVGESAVLRILD 584 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+++ LK+ F+ ND L D SG + L+TGPNM GKST++RQ ALI +M Sbjct: 585 GRHPVLD--LKEIEGG-FVPNDAQL----DSESGFIGLITGPNMAGKSTYIRQVALISLM 637 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQMGS+VPA A +GIVD++F+RVG++D L+ G+STFMVEM ETA ILN ATN+S VILD Sbjct: 638 AQMGSFVPAREADLGIVDRIFARVGASDELSRGQSTFMVEMTETARILNTATNRSLVILD 697 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DG+S+AW+ +EYLH+ CR L ATH+HELTDL SL N + V + + Sbjct: 698 EIGRGTSTYDGVSLAWSIVEYLHDKIGCRTLFATHYHELTDLRSSLPGVVNLNVAVKEWD 757 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 + +IFLHK++PG AD SYGI V +LAG+P V RA IL E + + + ++ + Sbjct: 758 DKVIFLHKIVPGAADKSYGIYVARLAGVPREVNERAKQILNQLESEHLDSGGNAKIASKK 817 Query: 857 IQTKESKNNLS---KNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + ++ LS ++ +EK++ +++DE +PL AL+ L A K Sbjct: 818 ERRPKTDLQLSLFGPHEHPLLEKLREVDVDETTPLQALQLLQAWK 862 >gi|298505934|gb|ADI84657.1| DNA mismatch repair ATPase MutS-1 [Geobacter sulfurreducens KN400] Length = 871 Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust. Identities = 338/890 (37%), Positives = 513/890 (57%), Gaps = 43/890 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL-GKDIPMC 84 TPMMRQY+EIK+ +PD+++F+R+GDFYE+F DDA+ ASR L ITLT R K G DIP+C Sbjct: 5 TPMMRQYLEIKADHPDAILFFRLGDFYEMFLDDAVKASRILDITLTSRNKGGDGADIPLC 64 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H+A YI KL++ G ++AICEQ+E P + K +V+R VV++VTPG + + + Sbjct: 65 GVPFHSAAPYIAKLVEAGEKVAICEQVEDP-----KSVKGIVKREVVKVVTPGLVIDAES 119 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFS--- 200 LSP ++NYL+++ W +A++D+STG F+++ T + D +++ ++PREI+ Sbjct: 120 LSPKENNYLLSLFPGPDRWGVAYLDLSTGDFRVTETDSADAAWAEVACVNPREILMPLSF 179 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ-VEKTA 259 ++ +E L G + +D +E + +++ + + + G S A Sbjct: 180 RDGVAGSERPDL--AAGRMLSYVDEWVYDAEYAERMVRNHFGVASAEAAGCGSMDCGLRA 237 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQSLLKTI 318 AA + Y+++TQ + I Y + Q L +D ++R NLE+ T+ G R SLL + Sbjct: 238 VAAVLHYLQQTQKGDVRHISYLQAYRTQEFLVLDESSRRNLELNATIGDGKRRGSLLGLL 297 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D ++T GGR + I PL KIN RLD++ + + ++ L D+ R Sbjct: 298 DRTVTAMGGRKLKQWINYPLVSIEKINERLDAVEELVADAEFRQGVRAALDGVYDLERLN 357 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLS 436 R+ + KD+ +R + +++ L + L LR ++ L +E+ + Sbjct: 358 GRISLASASAKDLVALRASLVRLPSLIALLTPAASTLLARLRDGIDLLA----DVEELIG 413 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + D P R+GG + G + LDE RS+ + K IA L+ + T I +LK+++N Sbjct: 414 RGIVPDPPFVLREGGIIAQGYHSELDELRSISREGKGFIARLEAQEKARTGISSLKVRYN 473 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+IEVT S+ S + D +I RQT++N RF T EL + E ++ A + + Sbjct: 474 KVFGYYIEVTKSNLSAIPDD------YIRRQTLANAERFITPELKEYEEKVLGAEDRIVE 527 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E F+ + + Q E + + +A +D+ ALA +A + Y RP +D +V Sbjct: 528 LEYALFQDIRQRVAAQGERIARTADRLATLDVLAALADVAHDHRYVRPTVDEGDAIVVTG 587 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE S+ F+AND L D +L ++TGPNM GKSTF+RQ ALIV+M Sbjct: 588 GRHPVVEAL---NRSERFVANDVQL----DNGENQLVIITGPNMAGKSTFMRQVALIVLM 640 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ GS+VPA A IG+VD++F+RVG++DNLA G+STFMVEM+ETA+IL AT +S V+LD Sbjct: 641 AQTGSFVPADEASIGVVDRIFTRVGASDNLARGQSTFMVEMMETAAILRNATPRSLVVLD 700 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRC--RGLLATHFHELTDLSKSLKRFHNATLQVSD 794 EIGRGT+T DG+SIAWA EYLH+T RC + L ATH+HELT+L+ + R N + V + Sbjct: 701 EIGRGTSTFDGVSIAWAVAEYLHDTERCAAKTLFATHYHELTELAVTRNRVKNCNVAVKE 760 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN------QK 848 N+ +IFL K++ G A HSYGIQV +LAGLP VI RA +IL EK + + Sbjct: 761 WNDQVIFLRKIVEGGASHSYGIQVARLAGLPQEVIERAKEILHNLEKGEYAEGGIPRIAR 820 Query: 849 DMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 R P+ + S + D L +I LN+ ++PL AL L +K Sbjct: 821 GKRAGAPKPSPQLSL--FDQGDDLLRRRIAGLNIAALTPLEALNILDELK 868 >gi|95929133|ref|ZP_01311877.1| DNA mismatch repair protein MutS [Desulfuromonas acetoxidans DSM 684] gi|95134631|gb|EAT16286.1| DNA mismatch repair protein MutS [Desulfuromonas acetoxidans DSM 684] Length = 869 Score = 596 bits (1536), Expect = e-168, Method: Compositional matrix adjust. Identities = 333/891 (37%), Positives = 526/891 (59%), Gaps = 39/891 (4%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPMMRQY+EIKS PD+++F+R+GDFYE+F DDA+ A+R L ITLT R K+ ++ Sbjct: 1 MATPTPMMRQYLEIKSQYPDAILFFRLGDFYEMFLDDAVTAARILDITLTSRNKNSDDEV 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 P+CGVP H+A YI KL+ GH++A+CEQ+E P + K +V+R+VVR+VTPG + E Sbjct: 61 PLCGVPYHSAQPYIAKLVASGHKVAVCEQVEDP-----KSVKGIVKRDVVRVVTPGMVLE 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFS 200 +L+P ++N+LM +A + + +A +DISTG F++ S + L +I PREI+ Sbjct: 116 SDMLTPDENNFLMVLAHCDSAYGVAIVDISTGEFRVTSVESPADLGREIDGNQPREIVLC 175 Query: 201 E--KELSHAEYKSLF-ETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVE 256 E +E+ + F E + NV P F+ ++ R+ ++ ++D FG Sbjct: 176 ECDEEVLRDQLAGHFQERMVNVL---PEWVFEGEDAQQRLYRFFQCDSLDAFGCQQLPAA 232 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLL 315 AA AA+ Y+++TQ I + +Q + +D A R NLE+ TL G R+ SLL Sbjct: 233 ICAAGAALYYVEETQKNTVEHIRTLKTYHVQDFMVLDEATRRNLELTATLIDGKRQGSLL 292 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D ++T GGR + I PL D I R + ++ + P+L + + + L D+ Sbjct: 293 GALDRTVTAMGGRKLRQWINQPLIDCQAIVQRHELVSELVDAPLLRDELGQCLDDVYDLE 352 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEK 433 R +R+ + KD+ +R + I+ L++ + L G ++ L + + Sbjct: 353 RLSARISMASANAKDLVALRHSLEQLPAIIAQASELQSTMGTTLAGEIDPLD----DVLR 408 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 +S+ ++D+ P R+GG +RDG LDE R + + K I L+ K E+T I LK+ Sbjct: 409 LISASIADNPPFVLREGGLIRDGYHEELDELRLISREGKSWIIGLEKKEREQTGINTLKV 468 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 + N GY+I+V + S + + E K QT++N R+ T EL + E+++ A Sbjct: 469 RFNKVFGYYIDVPKTQISKVPESYERK------QTLANSERYFTPELKEYEDKVLGAEER 522 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + +E E F+ + + + Q + ++ +A +D+ + A +A E+NY +P++D T Sbjct: 523 LVALEYELFQQIRSQVAAQGARIQQTAEALAQLDVMVCFAAVAHERNYVQPVMDQGTALT 582 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +++GRHP++E + FI ND L D + +L ++TGPNM GKSTF+RQ ALI Sbjct: 583 IEEGRHPVIESM---NLGERFIPNDVQL----DTETDQLLIITGPNMAGKSTFMRQVALI 635 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MAQ+GS VPA AHIG+VD++F+RVG++DNLA G+STFMVEM ETA+ILN AT++S + Sbjct: 636 TLMAQVGSLVPAKSAHIGVVDRIFTRVGASDNLARGQSTFMVEMSETANILNHATSRSLI 695 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQ 791 ILDEIGRGT+T DG+SIAWA EYLH+ ++ + L ATH+HELTDL+ + +R N + Sbjct: 696 ILDEIGRGTSTFDGVSIAWAVAEYLHDNDQVAAKTLFATHYHELTDLALTRERIANFNIA 755 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR 851 V + N+ I+FL K++ G A HSYGIQV +LAGLP+ VI RA ++L E Q + R Sbjct: 756 VREWNDQIVFLRKIVAGGASHSYGIQVARLAGLPDAVIGRAKEVLANLEGGEFSTQGEPR 815 Query: 852 LYYPEIQTKESKNN----LSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 L Q + K+ + +D ++++ ++++ +SPL AL L +K Sbjct: 816 LARSRQQPHQVKSPQMSLFNADDDPVRQQLQKVDVNTLSPLEALNLLDELK 866 >gi|39996921|ref|NP_952872.1| DNA mismatch repair protein MutS [Geobacter sulfurreducens PCA] gi|48428288|sp|P61667|MUTS_GEOSL RecName: Full=DNA mismatch repair protein mutS gi|39983809|gb|AAR35199.1| DNA mismatch repair protein MutS [Geobacter sulfurreducens PCA] Length = 871 Score = 595 bits (1535), Expect = e-168, Method: Compositional matrix adjust. Identities = 339/891 (38%), Positives = 513/891 (57%), Gaps = 45/891 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL-GKDIPMC 84 TPMMRQY+EIK+ +PD+++F+R+GDFYE+F DDA+ ASR L ITLT R K G DIP+C Sbjct: 5 TPMMRQYLEIKADHPDAILFFRLGDFYEMFLDDAVKASRILDITLTSRNKGGDGADIPLC 64 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H+A YI KL++ G ++AICEQ+E P + K +V+R VV++VTPG + + + Sbjct: 65 GVPFHSAAPYIAKLVEAGEKVAICEQVEDP-----KSVKGIVKREVVKVVTPGLVIDAES 119 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKE 203 LSP ++NYL+++ W +A++D+STG F+++ T + D +++ ++PREI+ Sbjct: 120 LSPKENNYLLSLFPGPDRWGVAYLDLSTGDFRVTETDSADAAWAEVACVNPREILMP--- 176 Query: 204 LSHAEYKSLFE----TLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ-VEKT 258 LS + + E G + +D +E + +++ + + + G S Sbjct: 177 LSFRDGGAGSERPDLAAGRMLSYVDEWVYDAEYAERMVRNHFGVASAEAAGCGSMDCGLR 236 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQSLLKT 317 A AA + Y+++TQ + I Y + Q L +D ++R NLE+ T+ G R SLL Sbjct: 237 AVAAVLHYLQQTQKGDVRHISYLQAYRTQEFLVLDESSRRNLELNATIGDGKRRGSLLGL 296 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D ++T GGR + I PL KIN RLD++ + + ++ L D+ R Sbjct: 297 LDRTVTAMGGRKLKQWINYPLVSIEKINERLDAVEELVADAEFRQGVRAALDGVYDLERL 356 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTL 435 R+ + KD+ +R + +++ L + L LR ++ L +E+ + Sbjct: 357 NGRISLASASAKDLVALRASLVRLPSLIALLTPAASTLLARLRDGIDLLA----DVEELI 412 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + D P R+GG + G + LDE RS+ + K IA L+ + T I +LK+++ Sbjct: 413 GRGIVPDPPFVLREGGIIAQGYHSELDELRSISREGKGFIARLEAQEKARTGISSLKVRY 472 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+IEVT S+ S + D +I RQT++N RF T EL + E ++ A + + Sbjct: 473 NKVFGYYIEVTKSNLSAIPDD------YIRRQTLANAERFITPELKEYEEKVLGAEDRIV 526 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E F+ + + Q E + + +A +D+ ALA +A + Y RP +D +V Sbjct: 527 ELEYALFQDIRQRVAAQGERIARTADRLATLDVLAALADVAHDHRYVRPTVDEGDAIVVT 586 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE S+ F+AND L D +L ++TGPNM GKSTF+RQ ALIV+ Sbjct: 587 GGRHPVVEAL---NRSERFVANDVQL----DNGENQLVIITGPNMAGKSTFMRQVALIVL 639 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ GS+VPA A IG+VD++F+RVG++DNLA G+STFMVEM+ETA+IL AT +S V+L Sbjct: 640 MAQTGSFVPADEASIGVVDRIFTRVGASDNLARGQSTFMVEMMETAAILRNATPRSLVVL 699 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRC--RGLLATHFHELTDLSKSLKRFHNATLQVS 793 DEIGRGT+T DG+SIAWA EYLH+T RC + L ATH+HELT+L+ + R N + V Sbjct: 700 DEIGRGTSTFDGVSIAWAVAEYLHDTERCAAKTLFATHYHELTELAVTRNRVKNCNVAVK 759 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN------Q 847 + N+ +IFL K++ G A HSYGIQV +LAGLP VI RA +IL EK + Sbjct: 760 EWNDQVIFLRKIVEGGASHSYGIQVARLAGLPQEVIERAKEILHNLEKGEYAEGGIPRIA 819 Query: 848 KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + R P+ + S + D L +I LN+ ++PL AL L +K Sbjct: 820 RGKRAGAPKPSPQLSL--FDQGDDLLRRRIAGLNIAALTPLEALNILDELK 868 >gi|148259924|ref|YP_001234051.1| DNA mismatch repair protein [Acidiphilium cryptum JF-5] gi|146401605|gb|ABQ30132.1| DNA mismatch repair protein MutS [Acidiphilium cryptum JF-5] Length = 882 Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust. Identities = 340/884 (38%), Positives = 498/884 (56%), Gaps = 33/884 (3%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 +TP M Q+ + K+ PD+L+F+RMGDFYELFF+DA AS L I LT RG H G+ I M Sbjct: 8 GATPAMAQWFQAKADYPDALIFFRMGDFYELFFEDAEAASAALDIALTARGTHQGEPIAM 67 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVPV + Y+ +LI+ G R+A+ EQ+E+P AK RG K+L+ R VVRL+TPGT+TE+ Sbjct: 68 CGVPVSQRDTYLTRLIRRGFRVAVAEQVEAPEAAKARGGKALIERAVVRLITPGTITEEA 127 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREII-FSEK 202 LL ++ L+A+ AW+D+ST F+ + L + + R+DP EI+ ++ Sbjct: 128 LLDQGRASLLLALVPRAGRIGAAWLDVSTASFETADLAGGELAALLGRLDPAEILSGADI 187 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 EL E + P ++ +A +++ ++D FG+F+ E AAA Sbjct: 188 ELGAHEGRR----------TDPGPPPAAELARRDLARLFDVASLDAFGAFTDQEAQAAAV 237 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 A+ Y++++Q P I P R + +D+A R++L++LRT G SL + ++ Sbjct: 238 ALRYVERSQAGTLPRIARPVRAGETGLMAMDAATRASLDLLRTADGGEAGSLFGAVRRTV 297 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL- 381 T AG R+ A IA+PL + R + P + ++ L+ +PD+ R+L+RL Sbjct: 298 TAAGARMLAGWIAAPLDAIGPLRARQAGWQSLLDAPGTLAALRTSLRGAPDLARALARLG 357 Query: 382 ----KIGRGEPKDIAVIRDGI---RSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 K GR P+D+ +RD + R+ L + D L G + KL P L Sbjct: 358 LAGRKAGRLSPRDLGQVRDSLAAARAVAEGLAPAVAADPAHPLAGDLAKLAAGPD-LGPL 416 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L + L + P D +R G D LD R LRD ++++IA+LQ + A + +LK++ Sbjct: 417 LEAALVETPPARIGDAPAIRAGFDGELDGERRLRDDTRQVIAALQTELASRYGVASLKVR 476 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 H++ LGY +E +++ L+ E I RQ +++ RFT EL DL+ RI A A Sbjct: 477 HHSQLGYVLEAPAAAVEALRAFPE----LILRQGLASAARFTHPELSDLDRRIAEAHERA 532 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 E + L A++ + +L + +A +D + A LA+ +C P + F + Sbjct: 533 AAREALVLDHLLAAVMREEAALAECAAALARLDALQSAATLAESGRWCAPELSEDAAFSI 592 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 GRHP+VE L + FIAND DLS +L LLTGPNM GKSTFLRQNAL++ Sbjct: 593 IAGRHPVVEAALPAGTR--FIANDADLSPER-----RLMLLTGPNMAGKSTFLRQNALVI 645 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 I+AQ G VPA A IG+VD+LFSRVG+AD+LA+GRSTFMVEMIETASILNQA +SFVI Sbjct: 646 ILAQAGLPVPAEQARIGLVDRLFSRVGAADDLAAGRSTFMVEMIETASILNQAGPRSFVI 705 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT T DGL+IA A +E LH + RCR + ATHFH+L L +L R T++V Sbjct: 706 IDEIGRGTGTQDGLAIAQAVLEALHGSIRCRSIFATHFHDLVQLGAALPRLRPCTMRVKS 765 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 ++FLH+VI G A+ S+G+ V KLAGLP VI RA +L+ E+ + L+ Sbjct: 766 WRGSVVFLHEVIEGAAERSWGVHVAKLAGLPEPVIRRAEALLRAAER-GGGEAGALPLFA 824 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L D + + D++SP AL+ +YA + Sbjct: 825 AAGEDPAPPAELPAADGWHAALAEA-DPDQLSPRAALELIYAWR 867 >gi|281204299|gb|EFA78495.1| DNA mismatch repair protein [Polysphondylium pallidum PN500] Length = 946 Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust. Identities = 345/861 (40%), Positives = 511/861 (59%), Gaps = 54/861 (6%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRG-KHL 77 ++ + TP M QY K P ++ +R+GDFYE+F+DDA S L ITLT RG K Sbjct: 98 QQQSQHETPAMLQYHHFKQKYPKHILLFRIGDFYEMFYDDAKEVSSLLHITLTTRGIKST 157 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 +IPMCG P H A YI+KLI+ G +A+C+Q+E RG+K + R V TPG Sbjct: 158 KNEIPMCGFPQHAAETYIEKLIRHGKTVAVCDQVEDVKSRSGRGSKVVKREVVRV-YTPG 216 Query: 138 TLTEDQLLSPT--DSNYLMAVARIRTE------------------WAIAWIDISTGIFKI 177 T+TED+ L +NYL+++ I + +A++W+DISTG F + Sbjct: 217 TVTEDRFLQQYHHQNNYLLSIVPIGIKQKSLSTLPNNHQFTSTQRFALSWLDISTGSFNV 276 Query: 178 STSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVF-FDHS---IS 233 S + D L ++++I P EI+ S+K + + ++ + + ++F FD + Sbjct: 277 SETTFDCLAGELVKISPSEILISQKLVECDQLNAILKPYHLSSSEDCSIFYFDKNREMFQ 336 Query: 234 ESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFID 293 E+ DY ++ D F FS + + ++Y+ TQ+ P I P+ Q+++FID Sbjct: 337 EAYGDDYIDVE--DQFPQFSTDQLGCIGSILNYVFSTQLGVIPHIDLPQSYSTQTSMFID 394 Query: 294 SAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINF 353 + R++LEI +T G R+ SLL TID +IT G RL RI SP +IN RL+ + + Sbjct: 395 HSTRNSLEITKTFQGIRKGSLLDTIDKTITSTGSRLLHSRIQSPCLSIVEINQRLNLVQY 454 Query: 354 FIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDL 413 F + P LI I+K+L D+ R + R+ I R P+D++ I + S ++ + L + L Sbjct: 455 FQERPDLIKEIRKLLMRCYDLERCIQRVYIKRAGPRDLSSIGSTLAS-LSYIKAMLSDSL 513 Query: 414 PE-----------ELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLD 462 + +++ ++ + + L+ TLS L D+ P DGGF++ G LD Sbjct: 514 KKKQKAGHSQFDRDIKHLIDGIANFDELLD-TLSEALVDNPPFILSDGGFIQPGYSKELD 572 Query: 463 ETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDR 522 E SL+ QSK +I LQ+ ++ I +LKIKHN +LGY+IE+ S+ + K Sbjct: 573 ELMSLQTQSKSVIEQLQMDTRKQLSIPSLKIKHNQSLGYYIEILSAHREKIPK------H 626 Query: 523 FIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQ-SESLDNASQ 581 FIH QT+ + RF + +L +LE +I ++ AL +E + F L++ I E E + ASQ Sbjct: 627 FIHAQTLMSHMRFKSSQLYELEEKINRSSAMALELEQKIFNQLADKISESYGEKIKKASQ 686 Query: 582 VIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE--KTLKQQSSKPFIANDC 639 +A IDIS +LA++A E++Y RPI+ + + GRHP VE + +K + K FI NDC Sbjct: 687 SLANIDISCSLALVAIERSYTRPILTENPILNIVGGRHPTVEYAQLVKTGTMKQFITNDC 746 Query: 640 DLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSR 699 L D LWL+TGPNMGGKSTFLRQNALI IM+Q+GS+VPA A +GI+D +FSR Sbjct: 747 HLDSQKD---SLLWLITGPNMGGKSTFLRQNALISIMSQIGSFVPADRAEVGIMDSIFSR 803 Query: 700 VGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLH 759 VGS+D+LA+ RSTFMVEMIETASIL +AT +SFVI+DE+GRGTATLDGL+IA + IEYL Sbjct: 804 VGSSDDLANDRSTFMVEMIETASILKKATQRSFVIMDEVGRGTATLDGLAIAQSIIEYL- 862 Query: 760 ETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVG 819 E+ +CR L ATH+HELT L+ +K+ L V + N ++F HK++PG+++ SYGI Sbjct: 863 ESIKCRTLFATHYHELTKLATVMKKIKCHALAVKEENGELLFTHKIMPGVSNKSYGIFCA 922 Query: 820 KLAGLPNTVISRAYDILKTFE 840 +LAG+P T+I RA ++L E Sbjct: 923 QLAGMPPTIIKRAKELLLKLE 943 >gi|94266424|ref|ZP_01290119.1| MutS 1 protein [delta proteobacterium MLMS-1] gi|93452966|gb|EAT03465.1| MutS 1 protein [delta proteobacterium MLMS-1] Length = 879 Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust. Identities = 348/902 (38%), Positives = 516/902 (57%), Gaps = 57/902 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD----I 81 TPM++QY+EIK+ +PD+++FYRMGDFYE+FFDDA A+ LGITLT RG G+D I Sbjct: 4 TPMLQQYLEIKNQHPDAILFYRMGDFYEMFFDDATTAAAILGITLTARGS--GQDGAEKI 61 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+ Y+ KLIK G R+AICEQ+E P +K LV R VVR+V+PG + E Sbjct: 62 PMCGVPYHSMGGYLAKLIKAGKRVAICEQMEEPGPGRK-----LVHREVVRVVSPGMVIE 116 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFS 200 +QLL ++ YL A+ W +A +D+STG F + + L+ ++ R P EI+ Sbjct: 117 EQLLDDKENRYLAALCHHHRVWGLALLDLSTGEFLVGEQERPEALLDELSRFQPAEILLP 176 Query: 201 EKELSHAEYKSLFETLG--NVAVAQ------PNVFFDHSISESRIADYYNITTVDTFGSF 252 L E L N + Q P F + + +++ + + FG Sbjct: 177 TPPDDQPAPPPLAELLPELNAQLPQCCLSRRPATEFQPEAARELLLEHFAVANLAGFGCE 236 Query: 253 SQVEK-TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SR 310 TAA ++ +++TQ V I + + L +D A R NLE++RT+SG R Sbjct: 237 QLTAGLTAAGGLLACLRQTQKVELSHINRLRLIEREQVLLLDEATRRNLELIRTISGHER 296 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 E SLL +DY+ T G R + + +PLT IN RLD + + + L +++ LK+ Sbjct: 297 EGSLLAALDYTRTPMGARQLKKSLLTPLTAVQAINRRLDGVETLLYDQQLAGALEQALKA 356 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF-----LKNDLPEELRGAVEKLK 425 D+ R SR+ +G +D+ +R + I L L +L EL G +E+L+ Sbjct: 357 VYDLERLNSRVVLGSANARDLTALRLSLEQLPPIKELLTPRDGLLGELGRELVG-LEELQ 415 Query: 426 KLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE 485 +L L++ + DD P ++G +R G A LDE R++ K +IA+L+ + E Sbjct: 416 QL-------LAAAIRDDAPVGLKEGNLIRPGYHAELDELRAILSDGKGMIAALEARERER 468 Query: 486 TKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 T I NLK+ +N GY++EV+ + + + +D FI +QT+ N R+ T EL + EN Sbjct: 469 TGIANLKVGYNRVFGYYLEVSKARSGEVPED------FIRKQTLVNAERYITPELKEFEN 522 Query: 546 RITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPI 605 +I+ A L +E F + + E + + + +A+ID+ ALAI A +Y RP Sbjct: 523 KISGAAEKQLELEYRLFREVRAQVAAAGEQILHNAARLAMIDLLAALAIAAGRHHYNRPR 582 Query: 606 IDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKST 665 +D+ I+ +GRHP++E+ L F+ ND +L D+ +L ++TGPNM GKST Sbjct: 583 VDDGDEIIINEGRHPVIERNLPPGR---FVPNDIEL----DRQQRELMIITGPNMAGKST 635 Query: 666 FLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILN 725 LRQ ALIV+MAQ+GS+VPA+ AHIG+VD++F+RVG+ DNL G+STFMVEM ETA+ILN Sbjct: 636 VLRQTALIVLMAQVGSFVPAAAAHIGVVDRIFTRVGAMDNLRRGQSTFMVEMNETANILN 695 Query: 726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLK 783 AT QS VILDEIGRGT+T DGL+IAWA E L + + R L ATH+HELT+L+ + Sbjct: 696 NATPQSLVILDEIGRGTSTFDGLAIAWAVAEALADKDGQGVRTLFATHYHELTELAATRS 755 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY 843 R HN + V + N+ IIFLHK++PG SYGIQV LAG+P TV++RA ++L E+ Sbjct: 756 RIHNFHIAVREWNDTIIFLHKLLPGGVSRSYGIQVAALAGVPPTVVARAKELLHNIEQGE 815 Query: 844 HHNQKDMRL-------YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYA 896 + Q R+ + K S+ L D +++ + D ++PL ALK +Y Sbjct: 816 FNRQGQPRIAGDQPAAAHHGAADKPSQLRLFAADDPLRRRLRKIQPDNLAPLEALKLIYE 875 Query: 897 VK 898 ++ Sbjct: 876 LR 877 >gi|326403122|ref|YP_004283203.1| DNA mismatch repair protein MutS [Acidiphilium multivorum AIU301] gi|325049983|dbj|BAJ80321.1| DNA mismatch repair protein MutS [Acidiphilium multivorum AIU301] Length = 882 Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust. Identities = 339/884 (38%), Positives = 498/884 (56%), Gaps = 33/884 (3%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 +TP M Q+ + K+ PD+L+F+RMGDFYELFF+DA AS L I LT RG H G+ I M Sbjct: 8 GATPAMAQWFQAKADYPDALIFFRMGDFYELFFEDAEAASAALDIALTARGTHQGEPIAM 67 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVPV + Y+ +LI+ G R+A+ EQ+E+P AK RG K+L+ R VVRL+TPGT+TE+ Sbjct: 68 CGVPVSQRDTYLTRLIRRGFRVAVAEQVEAPEAAKARGGKALIERAVVRLITPGTITEEA 127 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREII-FSEK 202 LL ++ L+A+ AW+D+ST F+ + L + + R+DP EI+ ++ Sbjct: 128 LLDQGRASLLLALVPRAGRIGAAWLDVSTASFETADLAGGELAALLGRLDPAEILSGADI 187 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 EL E + P ++ +A +++ ++D FG+F+ E AAA Sbjct: 188 ELGAHEGRR----------TDPGPPPAAELARRDLARLFDVASLDAFGAFTDQEAQAAAV 237 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 A+ Y++++Q P I P R + +D+A R++L++LRT G SL + ++ Sbjct: 238 ALRYVERSQAGTLPRIARPVRAGETGLMAMDAATRASLDLLRTADGGEAGSLFGAVRRTV 297 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL- 381 T AG R+ A IA+PL + R + P + ++ L+ +PD+ R+L+RL Sbjct: 298 TAAGARMLAGWIAAPLDAIGPLRARQAGWQSLLDAPGTLAALRTSLRGAPDLARALARLG 357 Query: 382 ----KIGRGEPKDIAVIRDGI---RSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 K GR P+D+ +RD + R+ L + D L + KL P+ L Sbjct: 358 LAGRKAGRLSPRDLGQVRDSLAAARAVAEGLAPAVAADPAHPLADDLAKLAAGPE-LGPL 416 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L + L + P D +R G D LD R LRD ++++IA+LQ + A + +LK++ Sbjct: 417 LEAALVETPPARIGDAPAIRAGFDGELDGERRLRDDTRQVIAALQTELASRYGVASLKVR 476 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 H++ LGY +E +++ L+ E I RQ +++ RFT EL DL+ RI A A Sbjct: 477 HHSQLGYVLEAPAAAVEALRAFPE----LILRQGLASAARFTHPELSDLDRRIAEAHERA 532 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 E + L A++ + +L + +A +D + A LA+ +C P + F + Sbjct: 533 AAREALVLDHLLAAVMREEAALAECAAALARLDALQSAATLAESGRWCAPELSEDAAFSI 592 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 GRHP+VE L + FIAND DLS +L LLTGPNM GKSTFLRQNAL++ Sbjct: 593 IAGRHPVVEAALPAGTR--FIANDADLSPER-----RLMLLTGPNMAGKSTFLRQNALVI 645 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 I+AQ G VPA A IG+VD+LFSRVG+AD+LA+GRSTFMVEMIETASILNQA +SFVI Sbjct: 646 ILAQAGLPVPAEQARIGLVDRLFSRVGAADDLAAGRSTFMVEMIETASILNQAGPRSFVI 705 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT T DGL+IA A +E LH + RCR + ATHFH+L L +L R T++V Sbjct: 706 IDEIGRGTGTRDGLAIAQAVLEALHGSIRCRSIFATHFHDLVQLGAALPRLRPCTMRVKS 765 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 ++FLH+VI G A+ S+G+ V KLAGLP VI RA +L+ E+ + L+ Sbjct: 766 WRGSVVFLHEVIEGAAERSWGVHVAKLAGLPEPVIRRADALLRAAER-GGGEAGALPLFA 824 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L D + + D++SP AL+ +YA + Sbjct: 825 AAGEDPAPPAELPAADGWHAALAEA-DPDQLSPRAALELIYAWR 867 >gi|222055849|ref|YP_002538211.1| DNA mismatch repair protein MutS [Geobacter sp. FRC-32] gi|221565138|gb|ACM21110.1| DNA mismatch repair protein MutS [Geobacter sp. FRC-32] Length = 870 Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust. Identities = 343/886 (38%), Positives = 521/886 (58%), Gaps = 36/886 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL-GKDIPMC 84 TPMMRQY+EIK+ PD+++F+R+GDFYE+F DDA+ ASR L ITLT R K+ G D+P+C Sbjct: 5 TPMMRQYLEIKADYPDAVLFFRLGDFYEMFLDDAVKASRILDITLTSRNKNSDGADVPLC 64 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G+P H+A YI KLI+ G ++AICEQ+E P AK +VRR VV+++TPG + + Sbjct: 65 GIPYHSAGPYITKLIEAGEKVAICEQVEDPKSAK-----GIVRREVVKVITPGLVVDGSS 119 Query: 145 LSPTDSNYLMAVARI-RTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEK 202 LSP D+NYL+++ W ++++D+STG F+++ + D ++++I + PREI+ Sbjct: 120 LSPKDNNYLLSIHNDDGNRWGLSYLDLSTGEFRLTELDSLDAVVAEIACVGPREILLPSF 179 Query: 203 ELSHAEYKSLFE-TLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT-AA 260 + + K L T G V + +DH +A ++ + + G V A Sbjct: 180 FRDNGKMKELARATAGLVVTHVEDWVYDHEYCRRLLAGHFAGASPSSLGCDGLVSGLYAV 239 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQSLLKTID 319 A + Y+++TQ + + L +D A R NLE+ TL+ G R+ SLL +D Sbjct: 240 GAVLHYLQETQKGKAAHVTSIKAYTNAEHLLLDEATRRNLELTATLAEGKRKGSLLGLMD 299 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T GGR + I PL + I R D++ +Q+ I +L D+ R Sbjct: 300 RTTTAMGGRKIKQWINYPLVTNRGITDRQDAVEALLQDAGSRAEIAALLNGVYDLERLNG 359 Query: 380 RLKIGRGEPKDIAVIRDG---IRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 R+ + KD+ ++D I + +L F N L G E L LP+ +E + Sbjct: 360 RISLASAGAKDLVAMKDSLARIPAIKEVLVAFSSNLLA----GLNEGLNPLPELIE-LIE 414 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + ++ P R+GG + DG +A LDE R++ + K IA L+ + + T I +LKI++N Sbjct: 415 RGIVENPPFVLREGGIIADGYNAELDELRAISREGKGFIARLEAQEKKRTGISSLKIRYN 474 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+IEVT ++ + D +I +QT++N R+ T EL + E+++ A + Sbjct: 475 KVFGYYIEVTRTNLDSIPAD------YIRKQTLANAERYITPELKEYEDKVLGAEDRIRD 528 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E F+ + A + + +A +D+ ++LA LA E NYCRP +D+ TN + D Sbjct: 529 LEFSLFQEIREAAAGHGNLIARTADCLATVDVLVSLAELAHENNYCRPKVDDGTNLAIVD 588 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP++E L Q + F+ ND L ND+N ++ ++TGPNM GKSTF+RQ ALIV+M Sbjct: 589 GRHPVIE-ALNQ--GERFVPNDTLLD--NDEN--QIIVITGPNMAGKSTFMRQVALIVLM 641 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A MGS+VPA+ A IG+VD++F+RVG++DNLA G+STFMVEM+E A+IL AT +S VILD Sbjct: 642 AHMGSFVPATEARIGMVDRIFTRVGASDNLARGQSTFMVEMMEAANILRNATPKSLVILD 701 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 EIGRGT+T DG+SIAWA EYLH+ + L ATH+HELT+LS + +R N + V + Sbjct: 702 EIGRGTSTFDGVSIAWAVAEYLHDNGEHAAKTLFATHYHELTELSVTRRRIKNFNIAVKE 761 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 NE IIFL K++PG A HSYGIQV +LAGLP VI RA +IL EK + + R+ Sbjct: 762 WNEQIIFLRKIVPGGASHSYGIQVARLAGLPLEVIERAKEILVNLEKGEYAEEGIPRIAR 821 Query: 855 PEIQT-KESKNNLSKN-DKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + T S+ +L +N + L +++ +++ ++PL AL L +K Sbjct: 822 EKKATVPTSQLSLFQNTEDLLRKRLLSIDVATLTPLEALNLLDELK 867 >gi|294055569|ref|YP_003549227.1| DNA mismatch repair protein MutS [Coraliomargarita akajimensis DSM 45221] gi|293614902|gb|ADE55057.1| DNA mismatch repair protein MutS [Coraliomargarita akajimensis DSM 45221] Length = 857 Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust. Identities = 328/839 (39%), Positives = 497/839 (59%), Gaps = 41/839 (4%) Query: 23 KSSTPMMRQYIEIKS-INPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 K TPMM+Q+ EI++ ++ D+L+ +R+GDFYE+F DA ++ LGITLT R + Sbjct: 7 KKLTPMMQQWHEIRAQLSDDTLLMFRLGDFYEIFKQDAEWGAKLLGITLTHR-----HGM 61 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PM G+P H A+ YIQKL+ G +IAIC+Q+E+P K LV+R + R++TPGT Sbjct: 62 PMAGIPFHAADSYIQKLLDQGVKIAICDQMETPKPGK------LVKRELTRIITPGTRLA 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFS 200 D + +++L+A+ + AW+D++TG F I++ + L + +DPREI+ Sbjct: 116 DSQIDAQRNHFLLALTMEKQRLNAAWLDLTTGEFFIASEEKPENLFAAFEGVDPREILVP 175 Query: 201 EK-------ELSHAEYKSLFETL--GNVAVAQPNVFFDHSISESRIADYYNITTVDTFG- 250 E SH ++ +L++ L G A P+ FD + + + + +D FG Sbjct: 176 ENLSQQWGLPHSHEKFDALYQHLTDGRAVTAVPDYHFDSTSGAQTVMETLGVLNLDGFGI 235 Query: 251 SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR 310 + A A ++Y +T + TL +D A NLEI ++ + +R Sbjct: 236 DRNHPALGTAGALVTYATETLCAKPENLRKLSEYSSDKTLLLDPATLRNLEIFKSAANTR 295 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 + SLL +D +IT AG R+ + +P D +I R + F+ P L +Q++L+ Sbjct: 296 QGSLLAAMDGTITPAGARMLERWLCAPELDLEEIQRRQACVEEFVNTPGLSTELQQLLRG 355 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI-LNLFLKNDLPEELRGAVEKLKKLPQ 429 D+ R L RL+ P+++ +RD + + +I +NL D P + E++ + Sbjct: 356 IRDIERILGRLQNRMRNPRELGGVRDTLNALPSIAVNLLEFPDTP--VAAIAERIHNF-E 412 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 +L +TL L+D+LP DGG +RDG D LD R L S++ + +L+ E T IK Sbjct: 413 ALCETLGHGLADELPGKIDDGGTIRDGYDEQLDHFRGLTRDSQQWLTEFELQEQERTGIK 472 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 NL+I++N GYFIEVT ++ S++ +D ++ +QTM N R+TT L + E I + Sbjct: 473 NLRIRYNGAFGYFIEVTKANVSLVPED------YVRKQTMKNAERYTTDTLKEREREILH 526 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 A ++ E E F L AI+E ++ L + +A ID+ I +LA+E +YC+P +D+S Sbjct: 527 AEEKSIAREEELFNGLIAAILEHADHLKETAAALAEIDVFIGWGVLAREWDYCKPELDHS 586 Query: 610 TNFIVKDGRHPIVEKTLKQQ-----SSKPFIANDCDLSCPN-DKNSGKLWLLTGPNMGGK 663 I+ GRHP+VE+ ++ + + F+ NDC LS +S ++ L+TGPNM GK Sbjct: 587 DALIIDQGRHPVVEQMMRDERLGLAGTHAFVPNDCRLSSSGIGDDSPQIALITGPNMAGK 646 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 ST++RQ ALIV+MAQ G++VPA H+G+VD++FSRVG++D LA G STFMVEM ETA+I Sbjct: 647 STYIRQVALIVLMAQSGAWVPARNCHLGLVDRIFSRVGASDELARGNSTFMVEMNETANI 706 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLH--ETNRCRGLLATHFHELTDLSKS 781 LN A+ +S VILDEIGRGT+T DGLSIAWA IE+LH + + R L ATH+HELT LS++ Sbjct: 707 LNNASPRSLVILDEIGRGTSTYDGLSIAWAVIEHLHPKDADGPRTLFATHYHELTQLSQT 766 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 L R N ++ V + N+ IIF+ +VI G AD SYGIQV +LAGLPNTVI RA +IL+ E Sbjct: 767 LDRLENYSVAVKEWNDEIIFVRQVIRGAADRSYGIQVARLAGLPNTVIDRAKNILERLE 825 >gi|189424210|ref|YP_001951387.1| DNA mismatch repair protein MutS [Geobacter lovleyi SZ] gi|254766629|sp|B3E6P2|MUTS_GEOLS RecName: Full=DNA mismatch repair protein mutS gi|189420469|gb|ACD94867.1| DNA mismatch repair protein MutS [Geobacter lovleyi SZ] Length = 872 Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust. Identities = 332/891 (37%), Positives = 509/891 (57%), Gaps = 46/891 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY+EIK+ +P+S++F+RMGDFYE+F DDAL+ASR L ITLT R K+ +IP CG Sbjct: 7 TPMMRQYLEIKAQHPESILFFRMGDFYEMFLDDALVASRILDITLTSRNKNSADEIPFCG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI +L++ G+R+A+CEQIE P + K LV+R+VV++VTP +TE + L Sbjct: 67 VPFHSAQPYIARLVEAGYRVAVCEQIEDP-----KQTKGLVKRDVVKVVTPALVTESESL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISD---IMRIDPREIIFSEK 202 +P ++++L+A+ W AW+D+STG F T+N D L + I PRE++ ++ Sbjct: 122 TPDENSFLLALCSSGQRWGCAWLDLSTGEFL--TANSDNLAGAATLLASIAPRELLLPDQ 179 Query: 203 ELSHAEYKSLFETLGNVAVAQPNV-----FFDHSISESRIADYYNITTVDTFG-SFSQVE 256 + L L VA +P D I + + + + G + +++ Sbjct: 180 L-----RRDLPPELALVAGDRPRAAVADWVLDKDYCSKLICSQFGVASPEMLGLAVTELS 234 Query: 257 KT--AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-S 313 + A + Y+++ + P + L +D A R NLE+ T++ +++ S Sbjct: 235 EALLATGMVLHYLQENRHATLPHLRDLTIVRQNDHLALDPATRRNLELTATMTDNKKSGS 294 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T G R + ++ PL I RL+++ +NP L + +++ LK D Sbjct: 295 LLGCLDRTATAMGARTLKQWLSYPLVQVAPIRRRLEAVEELKENPALQDQLREQLKGVHD 354 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R R+ + +D+ + D + + + L L LR E+L L Q + Sbjct: 355 LERLNGRVSMAGAGGRDLRSLHDSLEQ-VPQIRLALTEATAPLLRDLTEELDPL-QDIRS 412 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 ++ ++ P R+GG + DG A LDE R++ + K IA ++ + + T I +LKI Sbjct: 413 LINQAIAPAPPFSLREGGIIADGYHAELDELRAISREGKGYIARMEAQERDRTGISSLKI 472 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 ++N GY+IEVT S+ S + D +I RQT++ R+ T EL E ++ A + Sbjct: 473 RYNKVFGYYIEVTKSNLSSVP------DNYIRRQTIATGERYITEELKSYEEKVLGAEDR 526 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 +E F+ + Q + + +A +D+ +LA++A+E++YC+P++D+ Sbjct: 527 ICELEYTLFQEVRERTAAQGGRVSRTASALASLDVLASLALVAQERDYCKPVVDDGDTLE 586 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + +GRHP+VE + F+ ND L D+ +L ++TGPNM GKST++RQ ALI Sbjct: 587 IIEGRHPVVEA---MNLGERFVPNDTRL----DQEQHQLLMITGPNMAGKSTYMRQVALI 639 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MAQ+GS+VPAS A IGI D++F+RVG+ DNLA G+STFMVEM+ETA IL AT +S V Sbjct: 640 TLMAQVGSFVPASRATIGIADQIFTRVGAGDNLARGQSTFMVEMMETAHILRSATTKSLV 699 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRC--RGLLATHFHELTDLSKSLKRFHNATLQ 791 +LDEIGRGT+T DGLSIAWA EYLH+TN C R L ATH+HEL DL+ + + N T+ Sbjct: 700 VLDEIGRGTSTFDGLSIAWAVAEYLHDTNHCKARTLFATHYHELADLAATREGITNLTVA 759 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR 851 V + N+ +IFL +IPG A HSYGIQV +LAG+P VI RA ++LKT E+ Q R Sbjct: 760 VKEWNDQVIFLRTIIPGAASHSYGIQVARLAGMPRNVIERAKEVLKTLEE-GEFEQGSPR 818 Query: 852 LYYPEIQTKESKNN----LSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 L I + + L E++K LN+ M+PL AL L +K Sbjct: 819 LSKSSIAPPRKETAQFTLFEQQGDLLRERLKKLNISVMTPLEALNLLDELK 869 >gi|94263067|ref|ZP_01286886.1| MutS 1 protein [delta proteobacterium MLMS-1] gi|93456610|gb|EAT06718.1| MutS 1 protein [delta proteobacterium MLMS-1] Length = 879 Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust. Identities = 345/901 (38%), Positives = 514/901 (57%), Gaps = 55/901 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD----I 81 TPM++QY+EIK+ +PD+++FYRMGDFYE+FFDDA A+ LGITLT RG G+D I Sbjct: 4 TPMLQQYLEIKNQHPDAILFYRMGDFYEMFFDDATTAAAILGITLTARGS--GQDGAEKI 61 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+ Y+ KLIK G R+AICEQ+E P +K LV R VVR+V+PG + E Sbjct: 62 PMCGVPYHSMGGYLAKLIKAGKRVAICEQMEEPGPGRK-----LVHREVVRVVSPGMVIE 116 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFS 200 +QLL ++ YL A+ W +A +D+STG F + + L+ ++ R P EI+ Sbjct: 117 EQLLDDKENRYLAALCHHHRVWGLALLDLSTGEFLVGEQERPEALLDELSRFQPAEILLP 176 Query: 201 EKELSHAEYKSLFETLG--NVAVAQ------PNVFFDHSISESRIADYYNITTVDTFG-- 250 + L E L N + Q P F + + +++ + + FG Sbjct: 177 TPPDDQPDPPPLAELLPELNAQLPQCCLSRRPAAEFQPEAARELLLEHFAVANLAGFGCE 236 Query: 251 --SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG 308 + A + +K ++ + + ERE + L +D A R NLE++RT+SG Sbjct: 237 QLTAGLAAAGGLLACLRQTQKVELSHINRLRLIEREQV---LLLDEATRRNLELIRTISG 293 Query: 309 -SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI 367 RE SLL +DY+ T G R + + +PLT IN RLD + + + L +++ Sbjct: 294 HEREGSLLAALDYTRTPMGARQLKKSLLTPLTAVQAINRRLDGVETLLYDQQLAGALEQA 353 Query: 368 LKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKND-LPEELRGAVEKLKK 426 LK+ D+ R SR+ +G +D+ +R + I L D L EL + L++ Sbjct: 354 LKAVYDLERLNSRVVLGSANARDLTALRLSLEQLPPIKELLTPRDGLLGELGRELADLEE 413 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 L Q L++ + DD P ++G +R G A LDE R++ K +IA+L+ + E T Sbjct: 414 LQQ----LLAAAIRDDAPVGLKEGNLIRPGYHAELDELRAILSDGKGMIAALEARERERT 469 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 I NLK+ +N GY++EV+ + + + +D FI +QT+ N R+ T EL + EN+ Sbjct: 470 GIANLKVGYNRVFGYYLEVSKARSGEVPED------FIRKQTLVNAERYITPELKEFENK 523 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 I+ A L +E F + + E + + + +A+ID+ ALAI A +Y RP + Sbjct: 524 ISGAAEKQLELEYRLFREVRAQVAAAGEQILHNAARLAMIDLLAALAIAAGRHHYNRPRV 583 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 D+ I+ +GRHP++E+ L F+ ND +L D+ +L ++TGPNM GKST Sbjct: 584 DDGDEIIINEGRHPVIERNLPPGR---FVPNDIEL----DRQQRELMIITGPNMAGKSTV 636 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 LRQ ALIV+MAQ+GS+VPA+ AHIG+VD++F+RVG+ D+L G+STFMVEM ETA+ILN Sbjct: 637 LRQTALIVLMAQLGSFVPAAAAHIGVVDRIFTRVGAMDDLRRGQSTFMVEMNETANILNN 696 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKR 784 AT QS VILDEIGRGT+T DGL+IAWA E L + + R L ATH+HELT+L+ + R Sbjct: 697 ATPQSLVILDEIGRGTSTFDGLAIAWAVAEALADKDGQGVRTLFATHYHELTELAATRSR 756 Query: 785 FHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYH 844 HN + V + N+ IIFLHK++PG SYGIQV LAG+P TV++RA ++L E+ Sbjct: 757 IHNFHIAVREWNDTIIFLHKLLPGGVSRSYGIQVAALAGVPPTVVARAKELLHNIEQGEF 816 Query: 845 HNQKDMRLY--YPEI-----QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAV 897 + Q R+ P + K S+ L D +++ + D ++PL ALK +Y + Sbjct: 817 NRQGQPRIAGDQPAVAHHGAADKPSQLRLFAADDPLRRRLRKIQPDNLAPLEALKLIYEL 876 Query: 898 K 898 + Sbjct: 877 R 877 >gi|296124289|ref|YP_003632067.1| DNA mismatch repair protein MutS [Planctomyces limnophilus DSM 3776] gi|296016629|gb|ADG69868.1| DNA mismatch repair protein MutS [Planctomyces limnophilus DSM 3776] Length = 891 Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust. Identities = 326/897 (36%), Positives = 517/897 (57%), Gaps = 50/897 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM++Y+E+K +P +++F+RMGDFYELF++DA +A+R LG+TLT R K+ +PM G Sbjct: 15 TPMMQRYLEVKDQHPAAILFFRMGDFYELFYEDAKVAARILGLTLTSRDKNSENPVPMAG 74 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H Y+QK+I+ GHR+AICEQ+E P + K +V+R V ++VTPGTLT+D LL Sbjct: 75 FPYHALTGYLQKMIRAGHRVAICEQVEDP-----KAAKGMVKREVTQIVTPGTLTDDSLL 129 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK--- 202 P ++N L A+ ++ +AW+++STG F +T ++ ++ R+ P E++ E+ Sbjct: 130 DPRETNLLAAILPGKSHSGLAWLELSTGRFICATLPASQIHDELARLQPAEVLTPERSRE 189 Query: 203 ELSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFG----SFSQVEK 257 +L+ A + LG AV + P + + + D + + T++ FG S S + Sbjct: 190 DLTIARIR-----LGAWAVTERPPWAYRPEEAHRLLLDQFGVATLEGFGFSGNSSSTTQA 244 Query: 258 T------AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSR 310 T AA A + Y+++TQ + E + L ID + R +LE+ RTL S R Sbjct: 245 TIEPGIIAAGALLEYVRETQKSQLIHLSRLEPYEPSQHLLIDESTRRSLELTRTLRSNQR 304 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 E SLL ID ++T G RL E +++PL + T I RL++++ + + +Q+ILK+ Sbjct: 305 EGSLLWAIDQTVTPMGARLLLEWLSNPLKERTAIEARLNAVSELVVDLRTTQSLQEILKT 364 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRD--GIRSGINILNLFLKNDLPEELRGAVEKLKKLP 428 D+ R +R+ GR P+D+ + + I ++ L EL ++ L Sbjct: 365 GYDIQRLTARIGTGRATPRDLVSLTRTLSLLPQIKARLAGRRSTLLNELEAKID----LH 420 Query: 429 QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 Q L + + + L D+ P +GG +R G D LDE R L K +A+ Q + T I Sbjct: 421 QDLREAIEAALVDEPPLNLTEGGAIRPGFDPQLDEWRDLARGGKEWMAAYQAEEVRRTGI 480 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 NLK+ N G+++E ++S A + + +I +QT+ N R+ T L + E+++ Sbjct: 481 ANLKVGFNRVFGFYLECSASQADKVPPE------YIRKQTLKNYERYITPALKEYEDKVL 534 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 A + ++ +E + F L + ++ L ++ +A++D+ + AILA + Y RP I + Sbjct: 535 QAESRSIALEQQLFSDLRQKVSSRAAELRVTAESLAVLDVLCSFAILATRRQYVRPEIAS 594 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 ++ GRHP++++ L + F+ ND L N G + L+TGPNM GKST++R Sbjct: 595 EPVLEIRQGRHPVLDQLL---PTGGFVPNDIRLGGSN----GLIQLITGPNMAGKSTYIR 647 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q AL+ I+ Q+GS+VPA A IG+ D++F+RVG++D L G+STFMVEM ETA IL+ AT Sbjct: 648 QAALLTILTQIGSFVPAESARIGLADRIFARVGASDELGRGQSTFMVEMTETARILHSAT 707 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA 788 S VILDEIGRGT+T DG+S+AWA E+LH+ CR ATH+HELT LS SLK N Sbjct: 708 ASSLVILDEIGRGTSTYDGISLAWAITEFLHDAVGCRTFFATHYHELTQLSASLKSVMNW 767 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF--EKLYHHN 846 + V + N+ ++F+H+++PG AD SYGI VG+LAGLP V+ RA +ILK E+ H + Sbjct: 768 NVAVREHNDDVVFMHQIVPGAADKSYGIHVGRLAGLPGVVLDRAREILKVLEAEQTDHLS 827 Query: 847 QKDMRLYYPEIQTKESKNN----LSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 Q + P +T+ S+ + +EKI+ L++ MSP A + L +++ Sbjct: 828 QDPGKSRLPARKTRRSREQQLTLFELAEHPILEKIRQLDVHGMSPEAAWQELARLRS 884 >gi|188586122|ref|YP_001917667.1| DNA mismatch repair protein MutS [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350809|gb|ACB85079.1| DNA mismatch repair protein MutS [Natranaerobius thermophilus JW/NM-WN-LF] Length = 869 Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust. Identities = 329/887 (37%), Positives = 526/887 (59%), Gaps = 38/887 (4%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRG--K 75 + +N + TPM++QY++IK PD+++F+R+GDFYE+FF+DA LA++ L I LTKR K Sbjct: 1 MAKNTRKITPMIQQYLDIKEEYPDAILFFRVGDFYEMFFEDAELAAKELEIVLTKRSVDK 60 Query: 76 HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVT 135 IP+ G+P H+ YI KL+ G+++AICEQ+E P +AK +V+R VV+L+T Sbjct: 61 KDSNPIPLAGIPYHSCETYIGKLLDKGYKVAICEQVEDPQQAK-----GIVKREVVQLIT 115 Query: 136 PGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIF---KISTSNHDRLISDIMRI 192 PGT+ + L + N+L+ + + +A +D+STG F +IS +N+D++I +I+ + Sbjct: 116 PGTVLDSNFLKEKEHNFLVGLCEDHNYFGLATVDVSTGDFFVTEISKTNYDKVIDEILTV 175 Query: 193 DPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSF 252 PREII E++ + S + G + + F+ + + +N+ +++ FG Sbjct: 176 SPREIIIDEEKTRADKILSKLKNYGILVTNKSQPTFNKACD--ILKSQFNVESLEGFGLA 233 Query: 253 SQVEKTAAAA-AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR- 310 Q A + Y+ TQ + + +S L +DS R NLE+ T+ R Sbjct: 234 DQKSSIIAGGFLVQYLIDTQKTTLEHLQNVKPYSTESYLVMDSNTRKNLELCETIRQQRK 293 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 E SLL +D ++T GGR+ I PL + IN RL ++ FF+ N + + + LK+ Sbjct: 294 EGSLLWVLDKTLTAMGGRMLRNWIQHPLLNVDAINHRLQAVEFFL-NFMYREELARTLKN 352 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS 430 D+ R L ++ R PKD+ + + + ++ +L LKND L +++L L Sbjct: 353 VYDLERVLGKIIYDRATPKDLIALSNSLEILPDVKDL-LKNDEDGTLNDLMDRLPDL-MD 410 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L + ++S + D P ++GG ++DG D LD+ + L K IA+L+ K E T IK+ Sbjct: 411 LVELINSAIVPDPPATVKEGGIIKDGFDEELDKIKDLSRGGKEWIANLEAKEKERTGIKS 470 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+++N GY+IEVT + ++ +D +I +QT+ N RF T +L + E++I A Sbjct: 471 LKVRYNKVFGYYIEVTKKNLDLVPED------YIRKQTLVNAERFVTPDLKEYEDKILKA 524 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 +E + F+ + + +I + + + A++++A +D +LA A E ++ P +DNS Sbjct: 525 EEEMTDLEYKIFQKIRSEVISRIKEIQEAAKILAELDCYRSLAASAAEYDFVPPQVDNSD 584 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 +K+GRHP+VE+ +++ PF+ ND L D + ++ L+TGPNM GKST++RQ Sbjct: 585 IIDIKEGRHPVVERVSQEE---PFVPNDTYL----DNGTEQIALITGPNMAGKSTYMRQV 637 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI++MAQMGSYVPA+ A IGIVDK+F+RVG+AD+L SG+STFMVEM E A+ILN AT+ Sbjct: 638 ALIIVMAQMGSYVPATSARIGIVDKIFTRVGAADDLVSGQSTFMVEMNEVANILNNATSN 697 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNA 788 SFVILDEIGRGT+T DG+SIA A +EYLH+ ++ C+ L ATHFHEL +L+ R N Sbjct: 698 SFVILDEIGRGTSTFDGISIARAVVEYLHQEDKVACKTLFATHFHELIELADEFARVVNY 757 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 ++ V + + +IFL ++ G D SYG+QV +LAG+P VI RA +IL E + + Sbjct: 758 SVSVKEEGDDMIFLREIEKGGTDRSYGVQVARLAGIPRKVIGRAKEILSYLESRETNTEI 817 Query: 849 DMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 M Y + + ++LS ++++ +N DE+SP AL +Y Sbjct: 818 PMTGY------QVTLDDLSAEKNKLIQELNNINPDELSPKDALDKIY 858 >gi|117924747|ref|YP_865364.1| DNA mismatch repair protein MutS [Magnetococcus sp. MC-1] gi|189083157|sp|A0L7L5|MUTS_MAGSM RecName: Full=DNA mismatch repair protein mutS gi|117608503|gb|ABK43958.1| DNA mismatch repair protein MutS [Magnetococcus sp. MC-1] Length = 868 Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust. Identities = 341/887 (38%), Positives = 508/887 (57%), Gaps = 42/887 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM+ QY+ IK+ +P++L+F+RMGDFYELFFDDA A+ L I LT RGK G+ IPM G Sbjct: 7 TPMIAQYLSIKAAHPETLLFFRMGDFYELFFDDAKQAAEALNIALTSRGKSEGEPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +PVH Y+ KLI+ G ++AICEQ+E P +K VRR VVR VTPGTLTE+ LL Sbjct: 67 IPVHARQTYLNKLIEAGFKVAICEQMEPP-----GASKGPVRREVVRTVTPGTLTEESLL 121 Query: 146 SPTDSNYLMAV--ARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFS-- 200 SP ++NYL++ A R A+A +D+STG F ++ D++ +++ R++P E++ Sbjct: 122 SPRENNYLVSYLPAAKRHPHALAALDLSTGEFFALTLEREDQVAAELSRLEPAELLIPDN 181 Query: 201 -EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKT 258 E E +K G+ + FD + +++ +T++++FG + S Sbjct: 182 WEPEPWLKGWKRCLSRRGSWS-------FDGKEGARVLLEHFQVTSLESFGVADSPPCLG 234 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQSLLKT 317 A + Y ++TQ I R Q + +D R NLE+ L GSR+ SLL Sbjct: 235 VCGALLHYCRETQKEALSHITGLSRLHQQEGMVLDETCRRNLELNYNLKDGSRKSSLLGV 294 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D IT G RL A+ I PL I TR +S+++ +N + +++ L+ D+ R Sbjct: 295 MDRCITPMGSRLLAQWINRPLQSLDAIATRQESVSWLRENLVAYQDLRERLRMVHDLERF 354 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKND-----LPEELRGAVEKLKKLPQSLE 432 LSR+ + R P+D+ +R ++ + + D +P LR + ++L Sbjct: 355 LSRIALRRASPRDLGGLRQTLQCLPQLYAILTPADGHSLAVPSLLRILADHFNG-HEALT 413 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 K L L+D+LP ++G +R G D +LD RSL K + L+++ E+T I +LK Sbjct: 414 KQLEQQLADELPLNLKEGETIRLGFDQTLDTLRSLSRDGKSYLTKLEVEEREKTGIPSLK 473 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 IK++ + GY +EVT + + R+I RQTM+N R+ T EL + E ++ A Sbjct: 474 IKYHRSFGYSMEVTKTHLDKVPP------RYIQRQTMTNGVRYVTEELKEYEEQLLTAEE 527 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 L E FE L+ + Q+E+L +++ IA +D+ A +A+E+NYCRP++ Sbjct: 528 RMLEREQLLFEALAEQVARQAETLQASARAIATLDVLANFAHIAEERNYCRPLLHEGAVI 587 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 + GRHP+VE Q S PF+AND L N + +G L+TGPNM GKST +RQ AL Sbjct: 588 EINQGRHPVVE----QFSDTPFVANDIRLD--NRQRTG---LITGPNMAGKSTLMRQVAL 638 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 IV++A G+ VPA A IG VD++F+RVG++D+LA GRSTFMVEM ETA IL+ A+ +S Sbjct: 639 IVLLAHTGACVPAGSAKIGRVDRIFTRVGASDDLAGGRSTFMVEMTETAHILHHASERSL 698 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 VILDEIGRGT+T DGLSIAWA E++H + R L ATH+HELT L L N T++V Sbjct: 699 VILDEIGRGTSTYDGLSIAWAVAEHIHTQCQARTLFATHYHELTQLESQLDGVFNLTVEV 758 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK-LYHHNQKDMR 851 + + I+FLH ++ G AD SYGI V +LAGLP V RA ++L E+ HH + Sbjct: 759 KEWKDQILFLHTIVRGAADRSYGIHVAQLAGLPRAVTRRAREVLADLEEHAVHHPDSMGQ 818 Query: 852 LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + P Q + + ++K ++ DE++P AL+ LY +K Sbjct: 819 GHAPASQPYQLTLFEDAPPSPALLELKRVDPDELTPKEALEALYRLK 865 >gi|218132528|ref|ZP_03461332.1| hypothetical protein BACPEC_00387 [Bacteroides pectinophilus ATCC 43243] gi|217992638|gb|EEC58640.1| hypothetical protein BACPEC_00387 [Bacteroides pectinophilus ATCC 43243] Length = 884 Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust. Identities = 344/893 (38%), Positives = 532/893 (59%), Gaps = 42/893 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD--IPM 83 TPMM+QY+E K D ++FYR+GDFYE+FFDDA+ ASR L +TLT GK G++ PM Sbjct: 5 TPMMQQYLETKKEYKDCILFYRLGDFYEMFFDDAVTASRELELTLT--GKDCGQEERAPM 62 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVP H Y+ +LI G+++AICEQ+E P AK +V+R V+R+VTPGT Q Sbjct: 63 CGVPYHAVESYLNRLISKGYKVAICEQVEDPKTAK-----GIVKREVIRVVTPGTNLNMQ 117 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEK 202 L + +NYLM++ + E ++ +D STG F S+ + LI +I + P EII +E Sbjct: 118 ALDESKNNYLMSIVYLGDELGVSVVDFSTGDYFVTEVSSGNILIDEINKFVPSEIIINEY 177 Query: 203 -ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAA 260 +S + + E LG A PN +FD S+ ++ ++++++ +D G + AA Sbjct: 178 FAMSGIDLDPVREKLGISVSALPNWYFDESLCVRKLCEHFHVSRLDGLGLADYSTGIVAA 237 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTID 319 A + Y+ +TQ + + + IDS++R NLE++ TL +++ SLL +D Sbjct: 238 GALLQYLLETQKNSLEHLTTLMPYTTGKYMLIDSSSRRNLELVETLREKQKRGSLLWVLD 297 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G R I PL D +I R D I F N I I++ L D+ R +S Sbjct: 298 KTKTAMGARRLRAMIEQPLIDHDEIINRQDVIAEFNDNVITREEIREYLNPVYDLERLMS 357 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 ++ P+D+ R ++ + +L +K ++ EKL L + + + + S + Sbjct: 358 KISCRTANPRDLLAFRSSLQMLPYVKDL-IKPFNSVLMQKIYEKLDPL-EDIYQLIDSAI 415 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 DD P R+GG +++G +A DE R + K +A L+ + E+T IKNL++K+N Sbjct: 416 VDDPPIVLREGGIIKEGYNAQADELRKAKTDGKTWLAGLEEREKEQTGIKNLRVKYNKVF 475 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY++EVT+S KDL D ++ +QT+SN R+TT EL +LE+ I A + +E Sbjct: 476 GYYLEVTNSY-----KDL-VPDNWVRKQTLSNAERYTTEELKNLEDVILGAEDKLYALEY 529 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 + F + + I Q + + ++ IA ID+ +LA++A++ NY RP I++ +KDGRH Sbjct: 530 DLFVDVRDKIASQVMRIQSTAKAIAEIDVFASLALVAEQNNYVRPKINDKGLIDIKDGRH 589 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VEK + S+ FIAND L D N+ ++ ++TGPNM GKST++RQ ALIV+MAQ+ Sbjct: 590 PVVEKMI---SNDMFIANDTLL----DNNANRISIITGPNMAGKSTYMRQTALIVLMAQV 642 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPAS A+IGIVD++F+RVG++D+LASG+STFMVEM E A+IL AT++S +ILDEIG Sbjct: 643 GSFVPASSANIGIVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSKSLLILDEIG 702 Query: 740 RGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 RGT+T DGLSIAWA +E++ N + L ATH+HELT+L +L +N + V + + Sbjct: 703 RGTSTFDGLSIAWAVVEHISNKNLLGAKTLFATHYHELTELEGTLGGVNNYCIAVKEQGD 762 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA---------YDILKTFEKLYHHNQK 848 I+FL K++ G AD SYGIQV KLAG+P++VI+RA DI + +++ +++K Sbjct: 763 DIVFLRKIVKGGADKSYGIQVAKLAGVPDSVIARAKELVNDLSDADISQKAKEIAQYDKK 822 Query: 849 DMRLYY---PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 Y E++ + + D V++I L++ M+P+ AL TLY ++ Sbjct: 823 KPDEKYIRKNELEVNQMSLFDTAKDDDIVDEINSLDIGNMTPIDALNTLYKLQ 875 >gi|327540783|gb|EGF27349.1| DNA mismatch repair protein MutS [Rhodopirellula baltica WH47] Length = 891 Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust. Identities = 342/911 (37%), Positives = 509/911 (55%), Gaps = 69/911 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY E K D+L+F+RMGDFYELF DDA +A+ LG+TLT R K M G Sbjct: 2 TPMMRQYHEAKEACGDALLFFRMGDFYELFLDDAKVAAGILGLTLTSRDKDSENPTAMAG 61 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+QKLI+ G R A+CEQ+E P + K LVRR + R+V+ GTLT++ LL Sbjct: 62 FPHHQLDQYLQKLIRAGFRAAVCEQVEDP-----KAAKGLVRREITRVVSAGTLTDEGLL 116 Query: 146 SPTDSNYLMAV------ARIRTE--------------WAIAWIDISTGIFKISTSNHDRL 185 P + NYL AV AR + + IAW ++S+G F+ RL Sbjct: 117 DPKEPNYLAAVFAPSQKAREKAQKEAAKTNDPSGGDVVGIAWAELSSGRFEAGVFPRARL 176 Query: 186 ISDIMRIDPREIIFSEKELS-HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNIT 244 ++ RI P E++ E + S H + + + A+P + + +E + ++ Sbjct: 177 DDELARIGPAEVLHCEDDASVHPDSTATWSW-----TARPAWSYAATDAEKSLCKQLSVA 231 Query: 245 TVDTFG--SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEI 302 ++ G V AA A + Y+K+TQ + + L ID+A R +LEI Sbjct: 232 NLEGLGFEDNGDVAIRAAGAVLCYLKETQRGSLDHFRSLTCHNRSPVLQIDAATRRSLEI 291 Query: 303 LRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILI 361 RT+ +GSRE +LL ID ++T G RL A+ +A+PL D+ I R D+++ F++N L Sbjct: 292 TRTMRTGSREGALLGVIDRTVTPMGSRLLADHLAAPLIDADAITYRTDAVDEFVRNNNLR 351 Query: 362 NPIQKILKSSPDVPRSLSRLKIGRGEPKD---IAVIRDGIRSGINILNLFLKNDLPEELR 418 + I+ +L + D+ R L+R+ GR P+D IAV G+ + LK L E Sbjct: 352 SDIRTVLGDTYDLTRLLARVATGRTGPRDLRQIAVTLSGLPA--------LKARLAERDS 403 Query: 419 GAVEKLKK---LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRII 475 + +L+ L L + L S L+D+ P DG F+R+G D+ LD R L KR I Sbjct: 404 ACLTRLESELHLCPELREQLESALNDECPPSAADGNFIREGFDSELDTLRELARGGKRWI 463 Query: 476 ASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRF 535 A Q + +ET I NLK+ +N GY++EV+++ + D FI +QT+ N R+ Sbjct: 464 AEYQQRQMDETGIANLKVGYNRVFGYYLEVSNAHKDKIPAD------FIRKQTLKNCERY 517 Query: 536 TTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAIL 595 T EL + E ++ A A E F +L + L + IA+ D+ +LA + Sbjct: 518 ITPELKEYEEKVLAADEKASSREQMLFTLLRENTHKHLAILQEVANAIAMTDVVASLAEV 577 Query: 596 AKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLL 655 A + ++ RP + + + ++ GRHP+++ T+ Q F+ NDC+ S +G + L+ Sbjct: 578 AAQHHWVRPTLTDDSVLRIEGGRHPVLDVTMAQGE---FVPNDCNQS----PETGMILLI 630 Query: 656 TGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMV 715 TGPNM GKST++RQ ALI ++AQ GS+VPA+ A IGI D++F+RVG++D L+ G+STFMV Sbjct: 631 TGPNMAGKSTYIRQVALITLLAQTGSFVPATSAEIGIADRIFARVGASDELSRGQSTFMV 690 Query: 716 EMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHEL 775 EM+ETA ILN AT++S VILDEIGRGT+T DGLS+AWA E+LHE R L ATH+HEL Sbjct: 691 EMVETARILNTATSRSLVILDEIGRGTSTYDGLSLAWAITEHLHEQIGARTLFATHYHEL 750 Query: 776 TDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI 835 L ++L R N ++ V + + ++FLH+++PG AD SYGIQV +LAG+P V RA D+ Sbjct: 751 AALQETLPRVANLSVAVKEWQDEVVFLHRIVPGSADKSYGIQVARLAGIPVEVNERAKDV 810 Query: 836 LKTFEKLYHHNQKDMRLYYPE--IQTKESKNN-----LSKNDKLFVEKIKCLNLDEMSPL 888 L E H + D P + K S + D +++I+ +++D MSP+ Sbjct: 811 LAQLEA-DHRDSLDRPTIAPPSGVNGKGSGDTYQLTLFGYADHPLIQEIETVDIDSMSPI 869 Query: 889 TALKTLYAVKA 899 A + L KA Sbjct: 870 QAWQFLQEAKA 880 >gi|313574689|emb|CBX26197.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] gi|313574691|emb|CBX26198.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] gi|313574693|emb|CBX26199.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] Length = 439 Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust. Identities = 267/438 (60%), Positives = 339/438 (77%) Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 N RLD++ + I + L + ++ LK D+PR+LSRL + RG P+D+ IR G+ S I Sbjct: 1 NARLDAVAYLIDDVSLCDGLRDALKQVADMPRALSRLALERGGPRDLGAIRQGLASAERI 60 Query: 405 LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDET 464 + + LPEEL A+ LK LP LE L SML+DDLP KRDGGFLR+GA+ LDE Sbjct: 61 AAILDQGLLPEELASALADLKALPSGLEAMLGSMLADDLPLLKRDGGFLREGANPELDEV 120 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 R+LRDQS+R+IA LQL+YAEET IK+LKIKHNN LGYFIEVT+ +A V+ E+K RFI Sbjct: 121 RALRDQSRRVIAGLQLQYAEETGIKSLKIKHNNVLGYFIEVTAGNADVMTATDEAKARFI 180 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 HRQTM+ RFTT EL DLE+RI NA AL +ELE+FE + A+++Q++++ + +A Sbjct: 181 HRQTMAGAMRFTTTELADLESRIANAAAEALTMELEAFERMVKAVVQQADAIKAGALALA 240 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 +ID++ +LA LA EQ YCRPI+D S F +K GRHP+VE+ L++QS+ PFIAN+CDLS Sbjct: 241 VIDVASSLAYLATEQAYCRPIVDASMTFSIKGGRHPVVEQALRRQSAGPFIANNCDLSAV 300 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 N +G +WLLTGPNMGGKSTFLRQNALI I+AQ+GS+VPA AHIG+VD+LFSRVG++D Sbjct: 301 NGGKNGAIWLLTGPNMGGKSTFLRQNALIAILAQIGSFVPAEAAHIGVVDRLFSRVGASD 360 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 +LA GRSTFMVEM+ETA+ILNQAT++S VILDEIGRGTAT DGLSIAWA++E+LHE NRC Sbjct: 361 DLARGRSTFMVEMVETAAILNQATDRSLVILDEIGRGTATFDGLSIAWASVEHLHEVNRC 420 Query: 765 RGLLATHFHELTDLSKSL 782 RGL ATHFHELT LS+ L Sbjct: 421 RGLFATHFHELTVLSEKL 438 >gi|313574685|emb|CBX26195.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] gi|313574687|emb|CBX26196.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] Length = 439 Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust. Identities = 267/438 (60%), Positives = 339/438 (77%) Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 N RLD++ + I + L + ++ LK D+PR+LSRL + RG P+D+ IR G+ S I Sbjct: 1 NARLDAVAYLIDDVSLCDDLRDALKQVADMPRALSRLALERGGPRDLGAIRQGLASAERI 60 Query: 405 LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDET 464 + + LPEEL A+ LK LP LE L SML+DDLP KRDGGFLR+GA+ LDE Sbjct: 61 AAILDQGLLPEELASALADLKALPSGLEAMLGSMLADDLPLLKRDGGFLREGANPELDEV 120 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 R+LRDQS+R+IA LQL+YAEET IK+LKIKHNN LGYFIEVT+ +A V+ E+K RFI Sbjct: 121 RALRDQSRRVIAGLQLQYAEETGIKSLKIKHNNVLGYFIEVTAGNADVMTATDEAKARFI 180 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 HRQTM+ RFTT EL DLE+RI NA AL +ELE+FE + A+++Q++++ + +A Sbjct: 181 HRQTMAGAMRFTTTELADLESRIANAAAEALTMELEAFERMVKAVVQQADAIKAGALALA 240 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 +ID++ +LA LA EQ YCRPI+D S F +K GRHP+VE+ L++QS+ PFIAN+CDLS Sbjct: 241 VIDVASSLAYLATEQAYCRPIVDASMTFSIKGGRHPVVEQALRRQSAGPFIANNCDLSAV 300 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 N +G +WLLTGPNMGGKSTFLRQNALI I+AQ+GS+VPA AHIG+VD+LFSRVG++D Sbjct: 301 NGGKNGAIWLLTGPNMGGKSTFLRQNALIAILAQIGSFVPAEAAHIGVVDRLFSRVGASD 360 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 +LA GRSTFMVEM+ETA+ILNQAT++S VILDEIGRGTAT DGLSIAWA++E+LHE NRC Sbjct: 361 DLARGRSTFMVEMVETAAILNQATDRSLVILDEIGRGTATFDGLSIAWASVEHLHEVNRC 420 Query: 765 RGLLATHFHELTDLSKSL 782 RGL ATHFHELT LS+ L Sbjct: 421 RGLFATHFHELTVLSEKL 438 >gi|108762375|ref|YP_632077.1| DNA mismatch repair protein MutS [Myxococcus xanthus DK 1622] gi|123374426|sp|Q1D5J6|MUTS_MYXXD RecName: Full=DNA mismatch repair protein mutS gi|108466255|gb|ABF91440.1| DNA mismatch repair protein MutS [Myxococcus xanthus DK 1622] Length = 893 Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust. Identities = 329/897 (36%), Positives = 508/897 (56%), Gaps = 43/897 (4%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 + S TPMMRQY+E+K+++PDSL+F+R+GDFYE+FF+DA+ AS L ITLT R K K Sbjct: 9 EIASLTPMMRQYMEVKALHPDSLLFFRLGDFYEMFFEDAVKASEILQITLTARSKGADK- 67 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGN-KSLVRRNVVRLVTPGTL 139 +PMCGVP H A YI +L+ G ++AICEQ+E P GN +VRR V R++TPG + Sbjct: 68 VPMCGVPYHAARRYIGRLVSEGLKVAICEQVEEP------GNGPGIVRREVTRVITPGMV 121 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIF-KISTSNHDRLISDIMRIDPREII 198 ++++L P SN+L AV+ W A ++ STG F + L + R++PRE++ Sbjct: 122 LDEEVLEPQASNFLAAVSWNDKGWGAALLEASTGEFMALEAPGIAELAESLSRVEPRELL 181 Query: 199 FSEKELSHAEYKSLFETLGNV-AVAQPNVF-FDHSISESRIADYYNITTVDTFG-SFSQV 255 + + E L L AVA+ F+ + + + ++ + ++ FG + + Sbjct: 182 VPDGKRDAPEVAQLLARLVRTPAVAEGEAASFEPTRAAGYLRSHFAVQSLSAFGLDDAPL 241 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSL 314 AA AA+ Y+K TQ + R++ L +D ++R+NLE+LR+L G R+ SL Sbjct: 242 AAGAAGAALRYLKDTQKTAAAHVDRLSRQERGGNLLMDESSRANLEVLRSLRDGGRKGSL 301 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D ++T G R A +ASPL +I+ RLD++ + + ILK D+ Sbjct: 302 LGVLDKTVTSLGARKLARWLASPLGSLPEIHARLDAVEELSGRSVWREELAGILKEVGDL 361 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R RL +G G +D+ + + ++ + + + P L+ L LP+ L + Sbjct: 362 ERLCGRLSLGAGNARDLRALGLSLAQLPRVVAVLARCESPL-LKSLTGPLSALPE-LAEL 419 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 LS ++++ P +DGG +R G A LD+ +L K ++ ++ + E T I +LK++ Sbjct: 420 LSRAVAEEPPVTLKDGGMIRAGFHAELDKLVALSTSGKDLLLQIEQREKERTGISSLKVR 479 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY++EVT S+ + KD +I +QT N RF T EL + E ++ A Sbjct: 480 YNKVFGYYLEVTKSNLDRVPKD------YIRKQTTVNSERFVTPELKEYEEQVLTAEERR 533 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 +E++ FE L ++ + + +A++ +A D ++ A A E Y RP +D S + Sbjct: 534 CALEIQLFEELRAQVVSAAPRIRSAAEAVATGDALLSFARCAAEYGYTRPEVDASVALSI 593 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 GRHP+VE+ L S F+ ND L D +L ++TGPNM GKST +RQ AL Sbjct: 594 TAGRHPVVERMLGAGDS--FVPNDVRLDPAED---AQLMVITGPNMAGKSTVMRQVALTA 648 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 +MAQ GS+VPA A IG+ D++F+RVG+ADNLA G+STFMVEM ET+ IL+ ATN+S +I Sbjct: 649 LMAQAGSFVPAKAARIGLCDRIFTRVGAADNLARGQSTFMVEMTETSHILHHATNKSLII 708 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDEIGRGT+T DGLSIAWA E+LH+T R L ATH+HEL DL++ R N + V + Sbjct: 709 LDEIGRGTSTFDGLSIAWAVAEHLHDTVGARALFATHYHELVDLARERPRVKNLCVAVKE 768 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--KLYHHNQKDMRL 852 N +IFL K++PG A SYGI+V KLAGLP V+ RA ++L+ E +L + + + Sbjct: 769 QNGKVIFLRKLVPGGASRSYGIEVAKLAGLPPEVVGRARELLQNLESGELDDAGRPRVAV 828 Query: 853 YYPE---------------IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 P+ ++ + ++ + ++ +K ++D M+PL AL L Sbjct: 829 RQPQGGRRGASTGQLGLFGMEPAQGGTGVTPAQQKALDALKGASIDRMTPLDALNLL 885 >gi|322419136|ref|YP_004198359.1| DNA mismatch repair protein MutS [Geobacter sp. M18] gi|320125523|gb|ADW13083.1| DNA mismatch repair protein MutS [Geobacter sp. M18] Length = 869 Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust. Identities = 331/878 (37%), Positives = 508/878 (57%), Gaps = 35/878 (3%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL-GKDIPMC 84 TPMMRQ++EIK+ +PD+++F+R GDFYE+F DDA+ ASR LGITLT R K+ G ++P+C Sbjct: 5 TPMMRQFLEIKAEHPDAILFFRCGDFYEMFLDDAVKASRILGITLTSRNKNADGSEVPLC 64 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H+ YI KL++ G ++AICEQ E P AK +V+R VV+++TPG + ED Sbjct: 65 GVPYHSCAPYIAKLVEAGEKVAICEQAEDPKLAK-----GIVKREVVKVITPGLVVEDAS 119 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIF--SE 201 LSP ++NYL+A+ + ++++D+STG F+++ S ++++ I PREII S Sbjct: 120 LSPKENNYLLALCCDGECYGLSYLDLSTGEFRVTELSGLQAALAEVACISPREIILPSSF 179 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAA 260 +E A+ + + ++ + V+ D + I + + T +T G + AA Sbjct: 180 REAPRAKEVAHLSSDRSITYFEEWVY-DADYCKRLIGNQFKGATAETLGCHTLPTALLAA 238 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQSLLKTID 319 A + Y+ TQ N P + L +D + R NLE+ TLS G R+ SLL +D Sbjct: 239 GAVLHYLADTQKGNAPHVTGITPYCQNQHLLLDESTRRNLELTATLSDGKRKGSLLGLMD 298 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 ++T GGR + I PL D KI R D++ I+ P + ++ +L D+ R Sbjct: 299 RTVTAMGGRKLKQWINYPLMDLEKIRQRQDAVEELIEAPGVRAELKTLLSGVYDLERLNG 358 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKTLSS 437 R+ + KD+A ++ + I P +EL ++ L ++ ++ Sbjct: 359 RISLASASAKDLAALKASLSRLPAIKEQVAPCAAPLLKELECGIDPLDEICD----LITR 414 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + +D P RDGG + DG +A LDE R++ + K IA L+ + T I +LKI++N Sbjct: 415 AIVEDPPFVLRDGGIIADGYNAELDELRAISREGKGFIARLEAQEKGRTGISSLKIRYNK 474 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IEVT ++ S + +D +I RQT++N R+ T EL + E ++ A + + Sbjct: 475 VFGYYIEVTKANVSAIPED------YIRRQTLANAERYITPELKEYEEKVLGAEDRIKEL 528 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E F+ + A Q E + + +A +D+ ++LA L+ ++ YCRP + + + +G Sbjct: 529 EFSLFQQVREAAAAQGERIARTADRLACLDLLVSLAELSHDRGYCRPEVHEGSELSITEG 588 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP++E+ SS+ F+ ND L D +L ++TGPNM GKSTF+RQ ALI +MA Sbjct: 589 RHPVIEEMY---SSERFVPNDTFL----DNGENQLIIITGPNMAGKSTFMRQVALITLMA 641 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 QMGS+VPA A I +VD++F+RVG++DNLA G STFMVEM+E+A+IL AT +S VILDE Sbjct: 642 QMGSFVPAEKARIPLVDRIFTRVGASDNLARGHSTFMVEMMESAAILRGATAKSLVILDE 701 Query: 738 IGRGTATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 IGRGT+T DG+SIAWA E+LH+ + + L ATH+HELT+L+ + N + V + Sbjct: 702 IGRGTSTFDGVSIAWAVAEFLHDNKAHAAKTLFATHYHELTELAVTRPGIKNFNIAVREW 761 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 +E IIFL K++PG A HSYGIQV +LAGLP VI RA +IL EK + RL Sbjct: 762 SERIIFLRKIVPGGASHSYGIQVARLAGLPQAVIDRAKEILTNLEKGEYGEGGVPRLARG 821 Query: 856 EIQTKESK--NNLSKNDKLFVEKIKCLNLDEMSPLTAL 891 + S + + L E++K + + ++PL AL Sbjct: 822 KKAVAPSPQLSLFDAGEDLIRERLKGVEVALLTPLEAL 859 >gi|313574695|emb|CBX26200.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] Length = 439 Score = 575 bits (1483), Expect = e-162, Method: Compositional matrix adjust. Identities = 268/438 (61%), Positives = 337/438 (76%) Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 N RLD++ + I + L + ++ LK D+PR+LSRL + RG P+D+ IR G+ S I Sbjct: 1 NARLDAVAYLIDDVSLCDDLRDALKHVADMPRALSRLALERGGPRDLGAIRQGLASAEKI 60 Query: 405 LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDET 464 + LP+EL A++ LK LP LE L SML+DDLP KRDGGFLRDGA+ LDE Sbjct: 61 ATILDGGLLPDELATALKDLKALPGGLEAMLGSMLADDLPLLKRDGGFLRDGANPELDEV 120 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 R+LRDQS+R+IA LQLKYA+ET IK+LKIKHNN LGYFIEVT+ +A V+ E+K RFI Sbjct: 121 RALRDQSRRVIAGLQLKYADETGIKSLKIKHNNVLGYFIEVTAGNADVMMATDEAKARFI 180 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 HRQTM+ RFTT EL DLE+RI NA AL +ELE+F + A+++Q+E++ + +A Sbjct: 181 HRQTMAGAMRFTTTELADLESRIANAAAQALTMELEAFARMVEAVVQQAEAIKAGAFALA 240 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 +ID++ +LA LA EQ YCRPI+D S F +K GRHP+VE+ L++QS+ PFIAN+CDLS Sbjct: 241 VIDVASSLAYLATEQAYCRPIVDASMTFAIKGGRHPVVEQALRRQSAGPFIANNCDLSAV 300 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 N +G +WLLTGPNMGGKSTFLRQNALI I+AQ+GS+VPA AHIGIVD+LFSRVG++D Sbjct: 301 NGGKNGAIWLLTGPNMGGKSTFLRQNALIAILAQIGSFVPAEAAHIGIVDRLFSRVGASD 360 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 +LA GRSTFMVEM+ETA+ILNQAT++S VILDEIGRGTAT DGLSIAWA +E+LHE NRC Sbjct: 361 DLARGRSTFMVEMVETAAILNQATDRSLVILDEIGRGTATFDGLSIAWAAVEHLHEVNRC 420 Query: 765 RGLLATHFHELTDLSKSL 782 RGL ATHFHELT LS+ L Sbjct: 421 RGLFATHFHELTVLSEKL 438 >gi|148264432|ref|YP_001231138.1| DNA mismatch repair protein MutS [Geobacter uraniireducens Rf4] gi|189030727|sp|A5G447|MUTS_GEOUR RecName: Full=DNA mismatch repair protein mutS gi|146397932|gb|ABQ26565.1| DNA mismatch repair protein MutS [Geobacter uraniireducens Rf4] Length = 872 Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust. Identities = 332/890 (37%), Positives = 513/890 (57%), Gaps = 42/890 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL-GKDIPMC 84 TPMMRQY+EIK+ PD+++F+R+GDFYE+F DDA+ ASR L ITLT R K+ G D+P+C Sbjct: 5 TPMMRQYLEIKAGYPDAILFFRLGDFYEMFLDDAVKASRILDITLTSRNKNSDGADVPLC 64 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G+P H+A YI KLI+ G ++AICEQ+E P + K +VRR VV+++TPG + + Sbjct: 65 GIPYHSATPYIAKLIEAGEKVAICEQVEDP-----KSVKGIVRREVVKVITPGLVVDSSN 119 Query: 145 LSPTDSNYLMAV-ARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEK 202 LSP ++NYL+++ T W ++++D+STG F+++ D ++++ + PREII Sbjct: 120 LSPKENNYLLSLYCDDATTWGLSYLDLSTGEFRVTELDGFDAAVAEVACVKPREIILPAV 179 Query: 203 ELSHAEYKSLFETLGNVAVA-QPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAA 260 + K L +A + +D + I ++ + G A Sbjct: 180 FRENGRMKELMPVTAGLATTFVDDWVYDLDYCKRLIGSHFGGASPSALGCDGLNTGLYAI 239 Query: 261 AAAISYIKKTQ-----MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQSL 314 A + Y+++TQ VN I Y RE L +D + R NLE+ TL+ G R+ SL Sbjct: 240 CAVLHYLQETQKGRAGHVNS-IIPYTNRE----YLVLDESTRRNLELTATLAEGKRKGSL 294 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D + T GGR + I PL I R D+I F+Q+P + +L D+ Sbjct: 295 LGLMDRTTTAMGGRKMKQWINYPLVTIQSITERQDAIEEFVQDPSRRTALVFLLNGVYDL 354 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R R+ + KD+ +++ + + I + L + LR E L LP L Sbjct: 355 ERLNGRISLASAGAKDLVAMKESL-ARIPGIKELLASSSSVLLRRLNEGLNPLPD-LVGL 412 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 ++ + ++ P RDGG + DG +A LDE R++ + K IA L+ + T I +LKI+ Sbjct: 413 IAGGIVENPPFVLRDGGIIADGYNAELDELRAISREGKGFIARLEAQEKGRTGINSLKIR 472 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+IEVT ++ + + D +I +QT++N R+ T EL + E+++ A + Sbjct: 473 YNKVFGYYIEVTKTNLTSIPAD------YIRKQTLANAERYITPELKEYEDKVLGAEDRI 526 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 +E F+ + + E + + +A +D+ +LA LA E+NYCRP++D+ T + Sbjct: 527 RELEFSLFQEIRETVTGHGEIVARTADCLATLDVLASLAELAHERNYCRPLVDDGTTLFI 586 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 +GRHP++E + F+ ND L D +L ++TGPNM GKSTF+RQ ALI Sbjct: 587 SEGRHPVIEA---MHQGERFVPNDTLL----DNGENQLIIITGPNMAGKSTFMRQVALIT 639 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 +MAQMGS+VPA+ AHI +VD++F+RVG++DNLA G+STFMVEM+E+A+IL AT +S VI Sbjct: 640 LMAQMGSFVPATEAHISLVDRIFTRVGASDNLARGQSTFMVEMMESANILRHATPKSLVI 699 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQV 792 LDEIGRGT+T DG+SIAWA E+LH+ ++ + L ATH+HELT+L+ + KR N + V Sbjct: 700 LDEIGRGTSTFDGVSIAWAVAEFLHDNDKHAAKTLFATHYHELTELAVTRKRIKNFNIAV 759 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 + NE IIFL K++ G A HSYGIQV +LAGLP VI RA +IL+ EK + R+ Sbjct: 760 KEWNEQIIFLRKIVSGGASHSYGIQVARLAGLPLEVIERAKEILQNLEKGEFAEEGIPRI 819 Query: 853 YYPEIQTKESKNN----LSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + + + + +++K +++ ++PL AL L +K Sbjct: 820 ARGKKSAGSAPASQLSLFDSGEDMLRKRLKGMDVTTLTPLEALNLLDELK 869 >gi|32474719|ref|NP_867713.1| DNA mismatch repair protein MutS [Rhodopirellula baltica SH 1] gi|44888173|sp|Q7UP05|MUTS_RHOBA RecName: Full=DNA mismatch repair protein mutS gi|32445258|emb|CAD75260.1| DNA mismatch repair protein MUTS [Rhodopirellula baltica SH 1] Length = 891 Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust. Identities = 341/911 (37%), Positives = 509/911 (55%), Gaps = 69/911 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY E K D+L+F+RMGDFYELF DDA +A+ LG+TLT R K M G Sbjct: 2 TPMMRQYHEAKEACGDALLFFRMGDFYELFLDDAKVAAGILGLTLTSRDKDSENPTAMAG 61 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+QKLI+ G R A+CEQ+E P + K LVRR + R+V+ GTLT++ LL Sbjct: 62 FPHHQLDQYLQKLIRAGFRAAVCEQVEDP-----KAAKGLVRREITRVVSAGTLTDEGLL 116 Query: 146 SPTDSNYLMAV------ARIRTE--------------WAIAWIDISTGIFKISTSNHDRL 185 P + NYL AV AR + + IAW ++S+G F+ RL Sbjct: 117 DPKEPNYLAAVFAPSQKAREKAQKEAAKTNDPSGGDVVGIAWAELSSGRFEAGVFPRARL 176 Query: 186 ISDIMRIDPREIIFSEKELS-HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNIT 244 ++ RI P E++ E + S H + + + A+P + + +E + ++ Sbjct: 177 DDELARIGPAEVLHCEDDASVHPDPTATWSW-----TARPAWSYAAADAEKSLCKQLSVA 231 Query: 245 TVDTFG--SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEI 302 ++ G V AA A + Y+K+TQ + + L ID+A R +LEI Sbjct: 232 NLEGLGFEDNGDVAIRAAGAVLCYLKETQRGSLDHFRSLTCHNRSPVLQIDAATRRSLEI 291 Query: 303 LRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILI 361 RT+ +GSRE +LL ID ++T G R+ A+ +A+PL D+ I R D+++ F++N L Sbjct: 292 TRTMRTGSREGALLGVIDRTVTPMGSRMLADHLAAPLIDADAITYRTDAVDEFVRNNNLR 351 Query: 362 NPIQKILKSSPDVPRSLSRLKIGRGEPKD---IAVIRDGIRSGINILNLFLKNDLPEELR 418 + I+ +L + D+ R L+R+ GR P+D IAV G+ + LK L E Sbjct: 352 SDIRTVLGDTYDLTRLLARVATGRTGPRDLRQIAVTLSGLPA--------LKARLAERDS 403 Query: 419 GAVEKLKK---LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRII 475 + +L+ L L + L S L+D+ P DG F+R+G D+ LD R L KR I Sbjct: 404 ACLTRLESELHLCPELREQLESALNDECPLSAADGNFIREGFDSELDTLRELARGGKRWI 463 Query: 476 ASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRF 535 A Q + +ET I NLK+ +N GY++EV+++ + D FI +QT+ N R+ Sbjct: 464 AEYQQRQMDETGIANLKVGYNRVFGYYLEVSNAHKDKIPAD------FIRKQTLKNCERY 517 Query: 536 TTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAIL 595 T EL + E ++ A A E F +L + L + IA+ D+ +LA + Sbjct: 518 ITPELKEYEEKVLAADEKASSREQMLFTLLRENTHKHLAILQEVANAIAMTDVVASLAEV 577 Query: 596 AKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLL 655 A + ++ RP + + + ++ GRHP+++ T+ Q F+ NDC + P +G + L+ Sbjct: 578 AAQHHWVRPTLTDDSVLRIEGGRHPVLDVTMAQGE---FVPNDC-IQSPE---TGMILLI 630 Query: 656 TGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMV 715 TGPNM GKST++RQ ALI ++AQ GS+VPA+ A IGI D++F+RVG++D L+ G+STFMV Sbjct: 631 TGPNMAGKSTYIRQVALITLLAQTGSFVPATSAEIGIADRIFARVGASDELSRGQSTFMV 690 Query: 716 EMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHEL 775 EM+ETA ILN AT++S VILDEIGRGT+T DGLS+AWA E+LHE R L ATH+HEL Sbjct: 691 EMVETARILNTATSRSLVILDEIGRGTSTYDGLSLAWAITEHLHEQIGARTLFATHYHEL 750 Query: 776 TDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI 835 L ++L R N ++ V + + ++FLH+++PG AD SYGIQV +LAG+P V RA D+ Sbjct: 751 AALQETLPRVANLSVAVKEWQDEVVFLHRIVPGSADKSYGIQVARLAGIPVEVNERAKDV 810 Query: 836 LKTFEKLYHHNQKDMRLYYPE--IQTKESKNN-----LSKNDKLFVEKIKCLNLDEMSPL 888 L E H + D P + K S + D +++I+ +++D MSP+ Sbjct: 811 LAQLEA-DHRDSLDRPTIAPPSGVNGKGSGDTYQLTLFGYADHPLIQEIETVDIDSMSPI 869 Query: 889 TALKTLYAVKA 899 A + L KA Sbjct: 870 QAWQFLQEAKA 880 >gi|77919111|ref|YP_356926.1| DNA mismatch repair protein MutS [Pelobacter carbinolicus DSM 2380] gi|90109850|sp|Q3A4F1|MUTS_PELCD RecName: Full=DNA mismatch repair protein mutS gi|77545194|gb|ABA88756.1| DNA mismatch repair protein MutS [Pelobacter carbinolicus DSM 2380] Length = 870 Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust. Identities = 320/894 (35%), Positives = 503/894 (56%), Gaps = 52/894 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY++IK+ PD+++F+R+GDFYE+F +DA+ ASR L ITLT R K +++P+CG Sbjct: 5 TPMMRQYLDIKAQYPDAILFFRLGDFYEMFMEDAVTASRILDITLTSRNKGAAEEVPLCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H+ Y+ +L++ GH++AICEQ+E P + K +V+R VVR+VTPG + + L Sbjct: 65 IPYHSCQPYVARLVEAGHKVAICEQVEDP-----KTVKGIVKREVVRVVTPGLVVDADTL 119 Query: 146 SPTDSNYLMAVARIRTE-WAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKE 203 +P ++N+L A+A E + IA +DI+TG F+++ + S+++ + PREI+ SE + Sbjct: 120 TPKENNFLAAIAVSAQERYGIAVLDITTGEFRVTEVEGREAACSEVVSLQPREILVSEDQ 179 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT-AAAA 262 E + + P+ D R+ ++N ++++FG E AA Sbjct: 180 QQFCEQLLQGASGSWLINPLPDWVCDLEACGQRLQSFFNCGSLESFGCARLPEAVRAAGG 239 Query: 263 AISYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQSLLKT 317 + Y+++TQ +P + Y R+ + +D++ R NLE+ TL G R+ SLL Sbjct: 240 VVYYVEQTQKGVAGHIRPLVTYHSRD----YMVLDNSTRRNLELTATLQDGGRKGSLLGV 295 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D ++T GGR + I PL D I R S+ + ++ ++ L D+ R Sbjct: 296 LDRTVTAMGGRKIRQWIHHPLVDLKAIRDRHLSVQELVGQSLVRGDLRADLDGVYDLERL 355 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 S++ +G KD+ +R IL ++L L + + + + Sbjct: 356 NSKIAMGHANAKDLVALRKSFEKLPRILQHL--DELSAPLAAGIGSRIDPLTDMAELIGR 413 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + +D P R+GG + DG LDE R +R K IA L+ E T I +LK++ N Sbjct: 414 AIVEDPPFVLREGGLMCDGYHLELDELRDIRRNGKEWIAKLEADERERTGIGSLKVRFNK 473 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IEVT + + +D + K QT++N RF T +L + E ++ A + + Sbjct: 474 VFGYYIEVTRTHLGRVPEDYQRK------QTLANAERFFTPQLKEYEEKVLGAEDRLFDL 527 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E E F+ L + EQ E + ++ +A +D+ ++LA +A +Y P +D+S +++DG Sbjct: 528 EFELFQDLRERVAEQGERVQRTAEALAELDVLLSLADVAHSCDYVCPTMDDSDRLVIRDG 587 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP++E + F+ ND ++ C ++ ++TGPNM GKST++RQ ALI +MA Sbjct: 588 RHPVIEAM---NLGEHFVPNDVEMDC----RENQIMVITGPNMAGKSTYMRQVALITLMA 640 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 MGS VPA+ AHIG+VD++F+RVG++DNLA G+STFMVEM E A ILN AT++S ++LDE Sbjct: 641 HMGSLVPAASAHIGLVDRIFTRVGASDNLAQGQSTFMVEMTEAAHILNHATSRSLIVLDE 700 Query: 738 IGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 IGRGT+T DG+SIAWA EYLH+ + L ATH+HELTDL + +R N + V + Sbjct: 701 IGRGTSTFDGISIAWAVAEYLHDNGHVAAKTLFATHYHELTDLILTCERVKNLNIAVREW 760 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--KLYHHNQKDMRLY 853 NE IIFL K++ G A HSYGIQV +LAGLP VI RA +IL E +L Q Sbjct: 761 NEQIIFLRKIVKGPASHSYGIQVARLAGLPVAVIDRAKEILVNLESGELAEEGQ------ 814 Query: 854 YPEIQTKESKNNLSKNDKLFV---------EKIKCLNLDEMSPLTALKTLYAVK 898 P + + N ++ + EK+ L++ +SPL L L+ ++ Sbjct: 815 -PRLAQRAGGGQHRPNPQMSLFDAAADPVREKLAALDISTISPLEGLNFLHELQ 867 >gi|313574697|emb|CBX26201.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] Length = 439 Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust. Identities = 268/438 (61%), Positives = 337/438 (76%) Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 N RLD++ + I + L + ++ LK D+PR+LSRL + RG P+D+ IR G+ S I Sbjct: 1 NARLDAVAYLIDDVSLCDDLRDALKHVADMPRALSRLALERGGPRDLGAIRQGLASAEKI 60 Query: 405 LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDET 464 + LP+EL A++ LK LP LE L SML+DDLP KRDGGFLRDGA+ LDE Sbjct: 61 ATILDGGLLPDELATALKDLKALPGGLEAMLGSMLADDLPLLKRDGGFLRDGANPELDEV 120 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 R+LRDQS+R+IA LQLKYA+ET IK+LKIKHNN LGYFIEVT+ +A V+ E+K RFI Sbjct: 121 RALRDQSRRVIAGLQLKYADETGIKSLKIKHNNVLGYFIEVTAGNADVMMATDEAKARFI 180 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 HRQTM+ RFTT EL DLE+RI NA AL +ELE+F + A+++Q+E++ + +A Sbjct: 181 HRQTMAGAMRFTTTELADLESRIANAAAQALTMELEAFARMVEAVVQQAEAIKAGAFALA 240 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 +ID++ +LA LA EQ YCRPI+D S F +K GRHP+VE+ L++QS+ PFIAN+CDLS Sbjct: 241 VIDVASSLAYLAIEQAYCRPIVDASMTFAIKGGRHPVVEQALRRQSAGPFIANNCDLSAV 300 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 N +G +WLLTGPNMGGKSTFLRQNALI I+AQ+GS+VPA AHIGIVD+LFSRVG++D Sbjct: 301 NGGKNGAIWLLTGPNMGGKSTFLRQNALIAILAQIGSFVPAEAAHIGIVDRLFSRVGASD 360 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 +LA GRSTFMVEM+ETA+ILNQAT++S VILDEIGRGTAT DGLSIAWA +E+LHE NRC Sbjct: 361 DLARGRSTFMVEMVETAAILNQATDRSLVILDEIGRGTATFDGLSIAWAAVEHLHEVNRC 420 Query: 765 RGLLATHFHELTDLSKSL 782 RGL ATHFHELT LS+ L Sbjct: 421 RGLFATHFHELTVLSEKL 438 >gi|313574717|emb|CBX26211.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] Length = 439 Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust. Identities = 267/438 (60%), Positives = 336/438 (76%) Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 N RLD++ + I + L + ++ LK D+PR+LSRL + RG P+D+ IR G+ S I Sbjct: 1 NARLDAVAYLIDDVSLSDGLRDALKQVADMPRALSRLALERGGPRDLGAIRQGLASAERI 60 Query: 405 LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDET 464 + + LP+EL A+ LK LP LE L SML+DDLP KRDGGFLRDGA+ LDE Sbjct: 61 AAILDQGLLPDELATALADLKALPSGLEAMLGSMLADDLPLLKRDGGFLRDGANPELDEV 120 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 R+LRDQS+R+IA LQLKYA+ET IK+LKIKHNN LGYFIEVT+ +A V+ E+K RFI Sbjct: 121 RALRDQSRRVIAGLQLKYADETGIKSLKIKHNNVLGYFIEVTAGNADVMMATDEAKARFI 180 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 HRQTM+ RFTT EL DLE+RI NA AL +ELE+F + A+++Q+E++ + +A Sbjct: 181 HRQTMAGAMRFTTTELADLESRIANAAAQALTMELEAFARMVEAVVQQAEAIKAGAFALA 240 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 ID++ +LA LA EQ YCRPI+D S F +K GRHP+VE+ L++QS+ PFIAN+CDLS Sbjct: 241 TIDVASSLAYLATEQAYCRPIVDASMTFAIKGGRHPVVEQALRRQSAGPFIANNCDLSAV 300 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 N +G +WLLTGPNMGGKSTFLRQNALI I+AQ+GS+VPA AHIG+VD+LFSRVG++D Sbjct: 301 NGGKNGAIWLLTGPNMGGKSTFLRQNALITILAQIGSFVPAEAAHIGVVDRLFSRVGASD 360 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 +LA GRSTFMVEM+ETA+ILNQAT++S VILDEIGRGTAT DGLSIAWA +E+LHE NRC Sbjct: 361 DLAGGRSTFMVEMVETAAILNQATDRSLVILDEIGRGTATFDGLSIAWAAVEHLHEVNRC 420 Query: 765 RGLLATHFHELTDLSKSL 782 RGL ATHFHELT LS+ L Sbjct: 421 RGLFATHFHELTVLSEKL 438 >gi|313574755|emb|CBX26230.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] Length = 439 Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust. Identities = 267/438 (60%), Positives = 338/438 (77%) Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 N RLD++ + I + L + ++ LK D+PR+LSRL + RG P+D+ IR G+ S I Sbjct: 1 NARLDAVAYLIDDVSLCDGLRDALKHVADMPRALSRLALERGGPRDLGAIRLGLVSAEKI 60 Query: 405 LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDET 464 + LP+EL A++ LK LP LE L SML+DDLP KRDGGFLR+GA+ LDE Sbjct: 61 ATILDDGLLPDELATALKDLKALPGGLEAMLGSMLADDLPLLKRDGGFLREGANPELDEV 120 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 R+LRDQS+R+IA LQLKYA+ET IK+LKIKHNN LGYFIEVT+ +A V+ E+K RFI Sbjct: 121 RALRDQSRRVIAGLQLKYADETGIKSLKIKHNNVLGYFIEVTAGNADVMMATDEAKARFI 180 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 HRQTM+ RFTT EL DLE+RI NA AL +ELE+FE + A+++Q+E++ + +A Sbjct: 181 HRQTMAGAMRFTTTELADLESRIANAAAQALTMELEAFERMVKAVVQQAEAIKAGALALA 240 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 +ID++ +LA LA EQ YCRPI+D S F +K GRHP+VE+ L++QS+ PFIAN+CDLS Sbjct: 241 VIDVASSLAYLATEQAYCRPIVDASMTFAIKGGRHPVVEQALRRQSAGPFIANNCDLSAV 300 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 N +G +WLLTGPNMGGKSTFLRQNALI I+AQ+GS+VPA AHIG+VD+LFSRVG++D Sbjct: 301 NGGKNGAIWLLTGPNMGGKSTFLRQNALIAILAQIGSFVPAEAAHIGVVDRLFSRVGASD 360 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 +LA GRSTFMVEM+ETA+ILNQAT++S VILDEIGRGTAT DGLSIAWA +E+LHE NRC Sbjct: 361 DLARGRSTFMVEMVETAAILNQATDRSLVILDEIGRGTATFDGLSIAWAAVEHLHEVNRC 420 Query: 765 RGLLATHFHELTDLSKSL 782 RGL ATHFHELT LS+ L Sbjct: 421 RGLFATHFHELTVLSEKL 438 >gi|313574699|emb|CBX26202.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] gi|313574701|emb|CBX26203.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] gi|313574705|emb|CBX26205.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] gi|313574707|emb|CBX26206.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] gi|313574709|emb|CBX26207.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] gi|313574711|emb|CBX26208.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] gi|313574719|emb|CBX26212.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] Length = 439 Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust. Identities = 267/438 (60%), Positives = 336/438 (76%) Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 N RLD++ + I + L + ++ LK D+PR+LSRL + RG P+D+ IR G+ S I Sbjct: 1 NARLDAVAYLIDDVSLSDGLRDALKQVADMPRALSRLALERGGPRDLGAIRQGLASAERI 60 Query: 405 LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDET 464 + + LP+EL A+ LK LP LE L SML+DDLP KRDGGFLRDGA+ LDE Sbjct: 61 AAILDQGLLPDELATALADLKALPSGLEAMLGSMLADDLPLLKRDGGFLRDGANPELDEV 120 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 R+LRDQS+R+IA LQLKYA+ET IK+LKIKHNN LGYFIEVT+ +A V+ E+K RFI Sbjct: 121 RALRDQSRRVIAGLQLKYADETGIKSLKIKHNNVLGYFIEVTAGNADVMMATDEAKARFI 180 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 HRQTM+ RFTT EL DLE+RI NA AL +ELE+F + A+++Q+E++ + +A Sbjct: 181 HRQTMAGAMRFTTTELADLESRIANAAAQALTMELEAFARMVEAVVQQAEAIKAGAFALA 240 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 ID++ +LA LA EQ YCRPI+D S F +K GRHP+VE+ L++QS+ PFIAN+CDLS Sbjct: 241 TIDVASSLAYLATEQAYCRPIVDASMTFAIKGGRHPVVEQALRRQSAGPFIANNCDLSAV 300 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 N +G +WLLTGPNMGGKSTFLRQNALI I+AQ+GS+VPA AHIG+VD+LFSRVG++D Sbjct: 301 NGGKNGAIWLLTGPNMGGKSTFLRQNALITILAQIGSFVPAEAAHIGVVDRLFSRVGASD 360 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 +LA GRSTFMVEM+ETA+ILNQAT++S VILDEIGRGTAT DGLSIAWA +E+LHE NRC Sbjct: 361 DLARGRSTFMVEMVETAAILNQATDRSLVILDEIGRGTATFDGLSIAWAAVEHLHEVNRC 420 Query: 765 RGLLATHFHELTDLSKSL 782 RGL ATHFHELT LS+ L Sbjct: 421 RGLFATHFHELTVLSEKL 438 >gi|115377553|ref|ZP_01464752.1| DNA mismatch repair protein MutS [Stigmatella aurantiaca DW4/3-1] gi|310821639|ref|YP_003953997.1| DNA mismatch repair protein MutS [Stigmatella aurantiaca DW4/3-1] gi|115365440|gb|EAU64476.1| DNA mismatch repair protein MutS [Stigmatella aurantiaca DW4/3-1] gi|309394711|gb|ADO72170.1| DNA mismatch repair protein MutS [Stigmatella aurantiaca DW4/3-1] Length = 918 Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust. Identities = 321/827 (38%), Positives = 479/827 (57%), Gaps = 29/827 (3%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L S TPMMRQY+E K++NPD+L+F+R+GDFYELFF+DA+ AS L ITLT R K G Sbjct: 36 DLASLTPMMRQYLETKALNPDALLFFRLGDFYELFFEDAVKASELLQITLTARSKT-GDR 94 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGN-KSLVRRNVVRLVTPGTL 139 IPMCGVP H+A YI +LI+ G ++AIC+Q+E+P GN +VRR V R++TPG + Sbjct: 95 IPMCGVPYHSARRYIGRLIEQGLKVAICDQMEAP------GNGPGIVRREVTRIITPGMV 148 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREII 198 +D++L P SN+L AV + A ++ STG F + + L+ + R++PRE++ Sbjct: 149 LDDEVLEPRASNFLAAVHWGEKGFGAALLEASTGEFFTVEVPSAQELVEALSRVEPRELL 208 Query: 199 FSEKELSHAEYKSLFETLGN---VAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQ 254 E E L L VA + F H + + ++ + +++ FG S + Sbjct: 209 VPEGLTDAPEVAFLTSRLPRTPAVAGLEKAAFEPHRAT-VYLRMHFAVASLEAFGLSDAP 267 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQS 313 + AA AA+ Y+K TQ P + R + + +D ++R+NLE+L+TL G R+ S Sbjct: 268 LATGAAGAALRYLKDTQKTAAPHVDRLSRMERAGHMLMDESSRANLEVLKTLRDGGRKGS 327 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T G R A +A+PL +I+ RLD++ Q + + +LK D Sbjct: 328 LLGVLDRTATCMGARKLARWLATPLCALPEIHARLDAVEELAQRSVWREELTTLLKEVAD 387 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R RL +G G +D+ + + + + P LR L LP+ L Sbjct: 388 LERLCGRLSLGAGNARDLRALGMSLALLPKLATALGRCSAPL-LRALSGPLGALPE-LAD 445 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + D+ P ++GG +R G + LDE +L K + ++ + + T I +LK+ Sbjct: 446 LLLRAVVDEPPLVIKEGGLIRQGFHSELDEIVALSTSGKDKLLEIEARERKRTGISSLKV 505 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 ++N GY++EVT S+ ++ KD +I +QT RF T EL + E ++ A Sbjct: 506 RYNKVFGYYLEVTRSNLELVPKD------YIRKQTTVGAERFITPELKEFEEKVLTAEER 559 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 +EL FE L ++ + + +A++ +A D ++ A + E Y RP++D S F Sbjct: 560 RCALELRLFEELRAQVVAAAPRIRSAAEAVATCDALLSFARCSAEYGYTRPVVDESEVFS 619 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + GRHP+VE+ L + + F+ ND L D N +L ++TGPNM GKST +RQ AL Sbjct: 620 LTGGRHPVVERVLA--AGEAFVPNDVRL----DPNDAQLLVITGPNMAGKSTVMRQVALT 673 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 V+MAQ G +VPA AHIG+ D++F+RVG+ADNLA G+STFMVEM ET+ IL+ AT +S V Sbjct: 674 VLMAQAGCFVPARAAHIGLCDRIFTRVGAADNLARGQSTFMVEMTETSHILHHATRRSLV 733 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ILDEIGRGT+T DGLSIAWA E+LH+ R L ATH+HEL DL++ R N + V Sbjct: 734 ILDEIGRGTSTFDGLSIAWAVAEHLHDKVGARTLFATHYHELVDLAREKPRVKNLCVAVK 793 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + ++FL K++PG A+ SYGI+V +LAGLP V+ RA DIL+ E Sbjct: 794 EQGGKVLFLRKLVPGGANRSYGIEVARLAGLPQEVVGRARDILQNLE 840 >gi|313574749|emb|CBX26227.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens str. C58] Length = 439 Score = 572 bits (1475), Expect = e-161, Method: Compositional matrix adjust. Identities = 266/438 (60%), Positives = 338/438 (77%) Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 N RLD++ + I + L + ++ LK D+PR+LSRL + RG P+D+ IR G+ S I Sbjct: 1 NARLDAVAYLIDDVSLCDGLRDALKHVADMPRALSRLALERGGPRDLGAIRQGLVSAEKI 60 Query: 405 LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDET 464 + LP+EL A+ LK LP +LE L SML+DDLP KRDGGFLR+GA+ LDE Sbjct: 61 AVILDGGLLPDELAKALRDLKALPGALEAMLGSMLADDLPLLKRDGGFLREGANPELDEV 120 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 R+LRDQS+R+IA LQL+YA+ET IK+LKIKHNN LGYFIEVT+ +A V+ E+K RFI Sbjct: 121 RALRDQSRRVIAGLQLQYADETGIKSLKIKHNNVLGYFIEVTAGNADVMMATDEAKARFI 180 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 HRQTM+ RFTT EL DLE+RI NA AL +ELE+FE + A+++Q+E++ + +A Sbjct: 181 HRQTMAGAMRFTTTELADLESRIANAAAEALTMELEAFERMVEAVVQQAEAIKAGALALA 240 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 +ID++ +LA LA EQ YCRPI+D S F +K GRHP+VE+ L++QS+ PFIAN+CDLS Sbjct: 241 VIDVASSLAYLATEQAYCRPIVDASMTFSIKGGRHPVVEQALRRQSAGPFIANNCDLSAV 300 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 N +G +WLLTGPNMGGKSTFLRQNALI I+AQ+GS+VPA AHIG+VD+LFSRVG++D Sbjct: 301 NGGKNGAIWLLTGPNMGGKSTFLRQNALIAILAQIGSFVPAEAAHIGVVDRLFSRVGASD 360 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 +LA GRSTFMVEM+ETA+ILNQAT++S VILDEIGRGTAT DGLSIAWA +E+LHE NRC Sbjct: 361 DLARGRSTFMVEMVETAAILNQATDRSLVILDEIGRGTATFDGLSIAWAAVEHLHEVNRC 420 Query: 765 RGLLATHFHELTDLSKSL 782 RGL ATHFHELT LS+ L Sbjct: 421 RGLFATHFHELTVLSEKL 438 >gi|118579497|ref|YP_900747.1| DNA mismatch repair protein MutS [Pelobacter propionicus DSM 2379] gi|189083167|sp|A1AMW9|MUTS_PELPD RecName: Full=DNA mismatch repair protein mutS gi|118502207|gb|ABK98689.1| DNA mismatch repair protein MutS [Pelobacter propionicus DSM 2379] Length = 870 Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust. Identities = 325/891 (36%), Positives = 509/891 (57%), Gaps = 38/891 (4%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + TPMMRQY+EIKS PD+++F+RMGDFYE+F DDALLASR L ITLT R K G +I Sbjct: 1 MADHTPMMRQYLEIKSGYPDAVLFFRMGDFYEMFLDDALLASRILDITLTSRNKGSGDEI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 P CGVP H+ YI KLI+ GH++AICEQ+E P + K +VRR VVR++TPG L E Sbjct: 61 PFCGVPYHSVTPYITKLIENGHKVAICEQVEDP-----KQTKGIVRREVVRVITPGLLIE 115 Query: 142 DQLLSPTDSNYLMAVARIRTE-WAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIF 199 + LSP D+NYL+A+ + E W +AW+D+STG F+++ + +++ + I+P E++ Sbjct: 116 TENLSPDDNNYLLALHQGAEEQWGVAWLDLSTGEFRVTELAGPGSALAEAVCINPAEVLL 175 Query: 200 SEKELSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++ L E L V++ P ++ + S I D + + D G Sbjct: 176 ADGVRLEEFPADLKEYLAQKIVSRAPAWVYERDYTSSLICDQFGAASPDVLGLEGLPSGL 235 Query: 259 -AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQSLLK 316 AA AA+ Y+++ + P I L +D A R NLEI +++ G + SLL Sbjct: 236 LAAGAALYYLRENRKSAIPHIRDIRVYQRSEHLALDPATRRNLEITASMAEGKKSGSLLG 295 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D ++T G R + + PL I +RLD++ ++ + + +K D+ R Sbjct: 296 CLDRTVTAMGARRLKQWLGYPLVGLEPIRSRLDAVEELLEGATTRDELAAQMKGIADLER 355 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKT 434 R+ + +D+ + D ++ + L ++ L +L ++ L + + Sbjct: 356 LNGRIGMASASGRDLRALHDSLQRIPPLRELMATMQTALLCQLTKEIDPL----EDILDL 411 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + + ++ P R+GG + G + LDE RS+ + K IA L+ + T I +LKI+ Sbjct: 412 VGRGIVENPPFSLREGGIIAPGYNPELDELRSISHEGKGFIARLEAQERARTGISSLKIR 471 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N GY IE+T S+ + + D +I RQT++N R+ T EL + E ++ A + Sbjct: 472 FNKVFGYSIEITKSNLASVPAD------YIRRQTLANAERYITEELKNYEEKVLGAEDRI 525 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 +E F+ + + + + ++ +A +D+ I+LA +A E+ YC+P++D+S + Sbjct: 526 HELEYSLFQEIRERVAGEGSRIACSASGLATLDVLISLAGVADERGYCKPLVDDSQVIDI 585 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 DGRHP++E + + F+ ND L D ++ ++TGPNM GKST++RQ ALI Sbjct: 586 HDGRHPVIEA---MKLGERFVPNDTLL----DGGESQILMITGPNMAGKSTYMRQVALIT 638 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 +MAQ GS+VPA+ A IGI D++F+RVG+ DNL+ G+STFM+EM+E A IL AT +S ++ Sbjct: 639 LMAQAGSFVPAASARIGIADRIFTRVGAGDNLSRGQSTFMLEMMEAAGILRNATPKSLIV 698 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRG--LLATHFHELTDLSKSLKRFHNATLQV 792 +DEIGRGT+T DG+SIAWA EY+H+T CR L ATH+HELT+L+ + +R N T+ V Sbjct: 699 MDEIGRGTSTFDGVSIAWAVAEYIHDTPTCRSRTLFATHYHELTELAATRERIRNFTVAV 758 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKT-----FEKLYHHNQ 847 + N+ +IFL ++PG A HSYGIQV +LAG+P VI RA +IL+ FE+ Sbjct: 759 REWNDQVIFLRTIVPGGASHSYGIQVARLAGMPADVIERAKEILRNLENGEFEEGAPRIA 818 Query: 848 KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 K R P+ + S ++ L ++K LN+ ++PL AL L +K Sbjct: 819 KSRRQRTPDPSPQFSL--FESDEDLLRTRLKKLNIATLTPLEALNLLDELK 867 >gi|313574703|emb|CBX26204.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] gi|313574713|emb|CBX26209.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] gi|313574715|emb|CBX26210.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] Length = 439 Score = 571 bits (1472), Expect = e-160, Method: Compositional matrix adjust. Identities = 267/438 (60%), Positives = 335/438 (76%) Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 N RLD++ + I + L + ++ LK D+PR+LSRL + RG P+D+ IR G+ S I Sbjct: 1 NARLDAVAYLIDDVSLSDGLRDALKQVADMPRALSRLALERGGPRDLGAIRQGLASAERI 60 Query: 405 LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDET 464 + + LP+EL A+ LK LP LE L SML+DDLP KRDGGFLRDGA+ LDE Sbjct: 61 AAILDQGLLPDELATALADLKALPSGLEAMLGSMLADDLPLLKRDGGFLRDGANPELDEV 120 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 R+LRDQS+R+IA LQLKYA+ET IK+LKIKHNN LGYFIEVT+ +A V+ E+K RFI Sbjct: 121 RALRDQSRRVIAGLQLKYADETGIKSLKIKHNNVLGYFIEVTAGNADVMMATDEAKARFI 180 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 HRQTM+ RFTT EL DLE+RI NA AL +ELE+F + A+++Q+E++ + +A Sbjct: 181 HRQTMAGAMRFTTTELADLESRIANAAAQALTMELEAFARMVEAVVQQAEAIKAGAFALA 240 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 ID++ +LA LA EQ YCRPI+D S F +K GRHP VE+ L++QS+ PFIAN+CDLS Sbjct: 241 TIDVASSLAYLATEQAYCRPIVDASMTFAIKGGRHPGVEQALRRQSAGPFIANNCDLSAV 300 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 N +G +WLLTGPNMGGKSTFLRQNALI I+AQ+GS+VPA AHIG+VD+LFSRVG++D Sbjct: 301 NGGKNGAIWLLTGPNMGGKSTFLRQNALITILAQIGSFVPAEAAHIGVVDRLFSRVGASD 360 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 +LA GRSTFMVEM+ETA+ILNQAT++S VILDEIGRGTAT DGLSIAWA +E+LHE NRC Sbjct: 361 DLARGRSTFMVEMVETAAILNQATDRSLVILDEIGRGTATFDGLSIAWAAVEHLHEVNRC 420 Query: 765 RGLLATHFHELTDLSKSL 782 RGL ATHFHELT LS+ L Sbjct: 421 RGLFATHFHELTVLSEKL 438 >gi|125973295|ref|YP_001037205.1| DNA mismatch repair protein MutS [Clostridium thermocellum ATCC 27405] gi|256003775|ref|ZP_05428763.1| DNA mismatch repair protein MutS [Clostridium thermocellum DSM 2360] gi|281417499|ref|ZP_06248519.1| DNA mismatch repair protein MutS [Clostridium thermocellum JW20] gi|171769986|sp|A3DDI3|MUTS_CLOTH RecName: Full=DNA mismatch repair protein mutS gi|125713520|gb|ABN52012.1| DNA mismatch repair protein MutS [Clostridium thermocellum ATCC 27405] gi|255992336|gb|EEU02430.1| DNA mismatch repair protein MutS [Clostridium thermocellum DSM 2360] gi|281408901|gb|EFB39159.1| DNA mismatch repair protein MutS [Clostridium thermocellum JW20] gi|316940473|gb|ADU74507.1| DNA mismatch repair protein MutS [Clostridium thermocellum DSM 1313] Length = 870 Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust. Identities = 336/888 (37%), Positives = 530/888 (59%), Gaps = 40/888 (4%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + S TPMM+QY+EIK D ++F+R+GDFYE+FF DA +ASR L ITLT + L + Sbjct: 1 MASLTPMMQQYLEIKEQYKDCILFFRLGDFYEMFFSDAEVASRELEITLTGKDCGLEERA 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A+ YI KLI G+++AICEQIE P AK LV+R+V+R+VTPGT+T+ Sbjct: 61 PMCGVPFHSADSYIAKLISKGYKVAICEQIEDPALAK-----GLVKRDVIRIVTPGTVTD 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIF---KISTSN-HDRLISDIMRIDPREI 197 +L +NYLM++ + + + IA +D++TG F I+ N ++L+ +I + P EI Sbjct: 116 SAMLDEKKNNYLMSIYKNKNYYGIACVDLTTGEFLSTHITFGNTFNKLMDEIAKFSPSEI 175 Query: 198 IFSEKELSHAE--YKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQV 255 + + E H E K+L + + FF+ S ++ +Y+ ++ +F + Sbjct: 176 VVN-GEFFHDENIKKTLKQRFDVYISGLEDKFFEKEFSIQKVRNYFKDYVIEE-NAFD-L 232 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSL 314 A+ A + Y+++TQ VN I I+ + +D A R NLE+ T+ +R+ SL Sbjct: 233 YINASGALLEYLEQTQKVNLSHIQNFNVYRIEEYMILDMATRRNLELTETMREKNRKGSL 292 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D ++T GGR + I PL + I RLD++N F + ++ + ++++L++ D+ Sbjct: 293 LWVLDRTMTSMGGRTLRKWIEQPLINLHDIKDRLDAVNEFKERFMIRSEVRELLRAVYDI 352 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLE 432 R ++++ +G +D+ I+ I I L LK DL ++ L + + ++ Sbjct: 353 ERLMTKVILGSANCRDLISIKHSIGQVPYIKELLRDLKADLNVLSYNELDTLTDVYEIID 412 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 K + DD P ++GG +++G + +D RS K+ IA L+ K E T IKNLK Sbjct: 413 KAIV----DDPPVAVKEGGIIKEGFNEEVDRLRSASKDGKKWIAHLESKERERTGIKNLK 468 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 + N GY+IEVT S S + D +I +QT++N R+ T EL ++EN + A + Sbjct: 469 VGFNKVFGYYIEVTKSYYS------QVPDDYIRKQTLANCERYITPELKEIENTVLGAED 522 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 + +E + F + N + ++ L ++ +A ID+ +LA +A ++Y P + + Sbjct: 523 RLVELEYQIFVDVRNKVAKEINRLKTTARSLARIDVLCSLAEVADRESYTMPEVTDDDKI 582 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 +KDGRHP+VEK + Q++ F+ ND L D + ++ ++TGPNM GKST++RQ AL Sbjct: 583 EIKDGRHPVVEKIIGQEA---FVPNDTYL----DMDENQIAIITGPNMAGKSTYMRQVAL 635 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 IV+MAQ+GS+VPA A IGIVD++F+RVG++D+LA+G+STFMVEM E A+IL AT++S Sbjct: 636 IVLMAQIGSFVPAKSAKIGIVDRIFTRVGASDDLAAGQSTFMVEMSEVANILGNATSKSL 695 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 ++LDEIGRGT+T DGLSIAWA IEY+ E R L ATH+HELT+L + ++ N + V Sbjct: 696 LVLDEIGRGTSTYDGLSIAWAVIEYIGEKIGARTLFATHYHELTELEERIEGIKNYCISV 755 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--KLYHHNQKDM 850 + E IIFL K++ G AD+SYG+QV +LAG+P+ VI RA +ILK E + ++ Sbjct: 756 EEKGEDIIFLRKILRGGADNSYGVQVARLAGIPDPVIHRAKEILKKLEDADITRKEKRIT 815 Query: 851 RLYYP-EIQTKESKNNLSKN--DKLFVEKIKCLNLDEMSPLTALKTLY 895 R P E Q N ++ D++ E +K L++ ++PL A+ LY Sbjct: 816 RRKQPIEGQIDVFTFNAAQRSYDEVLNE-LKSLDITTLTPLDAINVLY 862 >gi|313574747|emb|CBX26226.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] Length = 439 Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust. Identities = 265/438 (60%), Positives = 337/438 (76%) Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 N RLD++ + I + L + ++ LK D+PR+LSRL + RG P+D+ IR G+ S I Sbjct: 1 NARLDAVAYLIDDVSLSDGLRDALKHVADMPRALSRLALERGGPRDLGAIRQGLVSAEKI 60 Query: 405 LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDET 464 + LP+EL A+ LK LP +LE L SML+DDLP KRDGGFLR+GA+ LDE Sbjct: 61 AVILDGGLLPDELAKALRDLKALPGALEAMLGSMLADDLPLLKRDGGFLREGANPELDEV 120 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 R+LRDQS+R+IA LQL+YA+ET IK+LKIKHNN LGYFIEVT+ +A V+ E+K RFI Sbjct: 121 RALRDQSRRVIAGLQLQYADETGIKSLKIKHNNVLGYFIEVTAGNADVMMATDEAKARFI 180 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 HRQTM+ RFTT EL DLE+RI NA AL IELE+FE + A+++Q+E++ + +A Sbjct: 181 HRQTMAGAMRFTTTELADLESRIANAAAEALTIELEAFERMVKAVVQQAEAIKAGAIALA 240 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 +ID++ +LA LA EQ YCRPI+D S F + GRHP+VE+ L++QS+ PFIAN+CDLS Sbjct: 241 VIDVASSLAYLATEQAYCRPIVDASMTFAITGGRHPVVEQALRRQSAGPFIANNCDLSAI 300 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 + +G +WLLTGPNMGGKSTFLRQNALI I+AQ+GS+VPA AHIG+VD+LFSRVG++D Sbjct: 301 DGGKNGAIWLLTGPNMGGKSTFLRQNALIAILAQIGSFVPAEAAHIGVVDRLFSRVGASD 360 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 +LA GRSTFMVEM+ETA+ILNQAT++S VILDEIGRGTAT DGLSIAWA +E+LHE NRC Sbjct: 361 DLARGRSTFMVEMVETAAILNQATDRSLVILDEIGRGTATFDGLSIAWAAVEHLHEVNRC 420 Query: 765 RGLLATHFHELTDLSKSL 782 RGL ATHFHELT LS+ L Sbjct: 421 RGLFATHFHELTVLSEKL 438 >gi|253701106|ref|YP_003022295.1| DNA mismatch repair protein MutS [Geobacter sp. M21] gi|259511168|sp|C6DZZ3|MUTS_GEOSM RecName: Full=DNA mismatch repair protein mutS gi|251775956|gb|ACT18537.1| DNA mismatch repair protein MutS [Geobacter sp. M21] Length = 869 Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust. Identities = 329/878 (37%), Positives = 505/878 (57%), Gaps = 35/878 (3%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL-GKDIPMC 84 TPMMRQ++EIK+ +PD+++F+R GDFYE+F DDA+ ASR LGITLT R K+ G ++P+C Sbjct: 5 TPMMRQFLEIKAEHPDAILFFRCGDFYEMFLDDAVKASRILGITLTSRNKNADGSEVPLC 64 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G+P H+ YI KL++ G ++AICEQ E P +AK +V+R VV+++TPG + ED Sbjct: 65 GIPYHSCAPYIAKLVEAGEKVAICEQAEDPKQAK-----GIVKREVVKVITPGLVIEDAS 119 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEKE 203 LSP ++NYL+A+ + ++++D+STG F+++ + ++++ I PREII Sbjct: 120 LSPKENNYLLALCCDGECYGLSYLDLSTGEFRVTELDGLQAALAEVTCIGPREIILPVCF 179 Query: 204 LSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAAA 261 + K + + + ++ +D + +A+ + T ++ G AA Sbjct: 180 REEPKRKEVAHVIVDRSITYFEEWVYDPDYCKRLVANQFKGATAESLGCDRLPTALLAAG 239 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQSLLKTIDY 320 A + Y+ TQ + P + + L +D + R NLE+ TLS G R+ SLL +D Sbjct: 240 AVLHYLVDTQKGHAPHVTCITPYNESEHLLLDESTRRNLELTATLSEGKRKGSLLGLMDR 299 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 ++T GGR + I PL D KI R D+I ++ P ++ +L D+ R R Sbjct: 300 TVTAMGGRKLKQWINYPLMDLKKIWLRQDAIQELMEAPGTREAMKSLLAGVYDLERLNGR 359 Query: 381 LKIGRGEPKDIAVIRDGIR--SGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 + + KD++ +R + I L +EL ++ L +L +SS Sbjct: 360 ISLASASAKDLSALRSSLSRLPAIKEQVAACGAGLLKELDAGIDPLDEL----SDLISSA 415 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + DD P RDGG + DG + LDE R++ + K IA L+ + T I +LKI++N Sbjct: 416 IVDDPPFVLRDGGIIADGYNQELDELRAISREGKGFIARLEAQEKGRTGISSLKIRYNKV 475 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IEVT ++ S + D +I RQT++N R+ T EL + E ++ A + +E Sbjct: 476 FGYYIEVTKANVSAIPDD------YIRRQTLANAERYITPELKEYEEKVLGAEDRIKDLE 529 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 F+ + A Q E + ++ +A +D+ ++L+ LA ++ YCRP + + + +GR Sbjct: 530 FSLFQEVREAAAAQGERIARSADRLACLDVLVSLSELAHDKGYCRPEVHEGSELSITEGR 589 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP++E S++ F+ ND L D +L ++TGPNM GKSTF+RQ ALI +MAQ Sbjct: 590 HPVIED---MHSAERFVPNDTLL----DNGENQLIIITGPNMAGKSTFMRQVALISLMAQ 642 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 MGS+VPA A I +VD++F+RVG++DNLA G STFMVEM+E+A+IL AT +S VILDEI Sbjct: 643 MGSFVPADKALIPLVDRIFTRVGASDNLARGHSTFMVEMMESAAILRGATARSLVILDEI 702 Query: 739 GRGTATLDGLSIAWATIEYLHET--NRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 GRGT+T DG+SIAWA E+LH+ + + L ATH+HELT+L+ + N + V + N Sbjct: 703 GRGTSTFDGVSIAWAVAEFLHDNKIHAAKTLFATHYHELTELAVTRPGIKNFNIAVREWN 762 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 E IIFL K++PG A HSYGIQV +LAGLP VI RA +IL EK + RL + Sbjct: 763 ERIIFLRKIVPGGASHSYGIQVARLAGLPQAVIDRAKEILINLEKGEYGEGGVPRLARGK 822 Query: 857 IQTKESKNNLS---KNDKLFVEKIKCLNLDEMSPLTAL 891 +T LS D E++K + + ++PL AL Sbjct: 823 -KTPPPSPQLSLFGAGDDQIRERLKEIEVALLTPLEAL 859 >gi|51244692|ref|YP_064576.1| DNA mismatch repair protein [Desulfotalea psychrophila LSv54] gi|81692923|sp|Q6AQ04|MUTS_DESPS RecName: Full=DNA mismatch repair protein mutS gi|50875729|emb|CAG35569.1| probable DNA mismatch repair protein (MutS) [Desulfotalea psychrophila LSv54] Length = 879 Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust. Identities = 331/900 (36%), Positives = 524/900 (58%), Gaps = 50/900 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL-GKDIPMC 84 TPMM+QY ++K +P +++FYRMGDFYE+FF+DA+ AS+ LGITLT R K IPMC Sbjct: 7 TPMMQQYFKLKEQHPHTILFYRMGDFYEMFFEDAITASKILGITLTSRNKKSDSAQIPMC 66 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G+P H Y+ K+++ G R+AICEQ+E P A+ +V+R VV++VTPG +T++QL Sbjct: 67 GIPYHALQGYLAKMVEAGKRVAICEQVEDPSTAQ-----GIVKREVVQIVTPGVVTDNQL 121 Query: 145 LSPTDSNYLMAVARIRT-EWAIAWIDISTGIFKIS----TSNHDRLISDIMRIDP-REII 198 L +N++ A++R + + ++++DI+TG F ++ + ++ + R+ P ++ Sbjct: 122 LDAKSNNFVTAISRGKNNRYGLSFLDITTGEFIVADFAGSDGEADILDQLTRLTPTELLV 181 Query: 199 FSEKELSHAEYKSLFETL--GNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 E+ AE L TL G +P+ FD S ++ +++ + ++D FG + VE Sbjct: 182 SEEELEDFAETIDLATTLIPGLCITPRPHHLFDFDQSHEKLLEHFAVISLDGFGCETLVE 241 Query: 257 -KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSL 314 + AAA + YI++TQ I R ++ + L ID ++R NLE+ +T+ G+R SL Sbjct: 242 GQIAAAILLDYIEETQKSAIHHIEKLSRLELDAILQIDDSSRRNLELTQTIVGGNRSGSL 301 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D + T G R + I PL D +I RL+++ +F N + I+++L D+ Sbjct: 302 LSVLDLTTTPMGARFLKQAILFPLQDRARILRRLNAVGYFFNNSEARHQIRELLDQVYDI 361 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEKLKKLPQSLE 432 R SR+ +G +D+ ++ + +L K D E E+ ++ L+ L Q L+ Sbjct: 362 ERLNSRITLGSANGRDMLAMKQSLARLPEMLTELRKCDTDELIEIEQTLDTLEDLHQLLD 421 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 K++ D PT R+G +R+G +A LDE L K++I L+ K E T I LK Sbjct: 422 KSIHP----DPPTNIREGNLIREGYNAELDEIIVLLRDGKKLILDLEAKERERTGIAKLK 477 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 + +N GYFIEV+ + +S + + +I +QT+ N RF T EL + E ++ A + Sbjct: 478 VSYNRVFGYFIEVSRAQSSRVP------EHYIRKQTLVNAERFITPELKEFETKVLGAED 531 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 L +E + F + N + S + +A++D + A ++++ NY RP I + + Sbjct: 532 RRLELEYQLFATVRNELASHSSRFLATAHQLALLDFYASAAEVSQQYNYHRPEIRDDGSL 591 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 +++GRHP++E++L + F+ ND L D+ ++ ++TGPNM GKST LRQ AL Sbjct: 592 EIREGRHPVIERSL---PAGKFVPNDVYL----DQAENEILVITGPNMAGKSTVLRQTAL 644 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 IV+MAQMG YVPA A IG+VD++F+RVG+ D+L G+STFMVEM ETA+ILN AT +S Sbjct: 645 IVLMAQMGYYVPADSARIGVVDRIFTRVGAMDDLRRGQSTFMVEMSETANILNNATPRSL 704 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATL 790 VILDEIGRGT+T DGLSIAWA E+L + + + + ATH+HELTDL++ R N ++ Sbjct: 705 VILDEIGRGTSTYDGLSIAWAVTEHLVQKDGIGVKTMFATHYHELTDLARRYARIQNYSI 764 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF--------EKL 842 V + + +IFLHK+I G SYGIQV LAG+P V+ RA++IL + EK+ Sbjct: 765 AVREWQKSVIFLHKLIKGGTSRSYGIQVAALAGVPAQVVERAHEILHSIESGDFLAGEKV 824 Query: 843 YHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTL 902 QK++ + P + + KI+ ++LDE++P AL LYA+K T+ Sbjct: 825 GGQPQKELSEHKP-----HQPSLFAPPTDEIRTKIREMDLDELTPRQALDALYALKEMTV 879 >gi|330794507|ref|XP_003285320.1| hypothetical protein DICPUDRAFT_29143 [Dictyostelium purpureum] gi|325084772|gb|EGC38193.1| hypothetical protein DICPUDRAFT_29143 [Dictyostelium purpureum] Length = 850 Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust. Identities = 337/868 (38%), Positives = 512/868 (58%), Gaps = 80/868 (9%) Query: 29 MRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPMCGV 86 M QY KS+ PD+++ +++GDFYELF DA+ +S+ L ITLT + G++ IPMCG Sbjct: 1 MAQYNHFKSLYPDAILLFKLGDFYELFNQDAIESSKILNITLTTKRIGENKSMGIPMCGF 60 Query: 87 PVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLS 146 P H+++ +I+KLIK+G IAIC+Q+E EAKK G +++R VVR++TPGT+ E++ L Sbjct: 61 PTHSSDIHIEKLIKVGKTIAICDQVEDAREAKKNG--RVIKREVVRVITPGTIFEERFLK 118 Query: 147 PTDSNYLMAVARIR---------------TEWAIAWIDISTGIFKISTSNHDRLISDIMR 191 + +NYL + + ++I+W+D+STG F + + +D L+S++ R Sbjct: 119 SSQNNYLCNFLPVNYHQKDFSNQVLYNNTSRFSISWLDLSTGYFYTTETTYDNLLSELTR 178 Query: 192 IDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITT-----V 246 I P EI+ + + + L ++ N++ +F + + S+ + YN+ + Sbjct: 179 ISPNEILLPKSLIENPSISKLIKSF-NISTESDEIFKIKN-TLSKFNETYNLNLNYNQLI 236 Query: 247 DTFG--------SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQS-TLFIDSAAR 297 ++ G +FS E ++ + ++Y+ TQM N P + YP ++ S T+ ID + Sbjct: 237 NSNGFFDGTSERNFSIDELNSSGSILNYVINTQMGNIPHL-YPLKKFSSSNTMSIDFSTM 295 Query: 298 SNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQN 357 +LEI++TL ++ ++L +D ++T +G RL RI SP + +IN RL+ I FF +N Sbjct: 296 QSLEIIKTLQNQKKGTILDCLDKTLTSSGSRLLYSRIQSPSLNINEINNRLNLIEFFYEN 355 Query: 358 PILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEEL 417 + I+K+L D+ R L R+ I + P+D++ GI S + I ++ +K L E + Sbjct: 356 LDITKEIRKLLVRCLDLERCLQRVYISKAGPRDLS----GIGSTLAI-SMEIKRILDERI 410 Query: 418 RGAVEKLKKLPQ----------------SLEKTLSSMLSDDLPTFKRDGGFLRDGADASL 461 + KLK PQ L LSS L D+ P DG F+ G L Sbjct: 411 K----KLKPTPQINNLVENINNKLNDFKQLLLYLSSALVDNPPFNTSDGNFIEKGYSKEL 466 Query: 462 DETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKD 521 D T RD SK ++ +Q KY ++ + +LKIKHN +GY+ E+ S+ K + S Sbjct: 467 DNTIKARDNSKELVQEIQKKYRDQLSLPSLKIKHNQIIGYYFEIQST----FKNKIPS-- 520 Query: 522 RFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQ 581 FIH QT+ + RF + +L+ LE+ I + + AL IE+ F L + + + S Sbjct: 521 NFIHVQTLLSHMRFKSEDLLKLEDEINISVSKALEIEIGLFNQLCKLTLSFGDQIKETSD 580 Query: 582 VIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDL 641 V++IID+S LA++AKE+ Y +PII+ + + V +GRHP VE K S + ND D Sbjct: 581 VLSIIDVSTTLALIAKERLYVKPIINETKSLKVINGRHPTVELVTKNFISNDLVLND-DS 639 Query: 642 SCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVG 701 + ++ LWL+TGPNMGGKSTFLRQNA+I++MAQMGSYVPA YA IGIVD++FSRVG Sbjct: 640 NNHEKEDETLLWLITGPNMGGKSTFLRQNAIIILMAQMGSYVPADYAEIGIVDQIFSRVG 699 Query: 702 SADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHET 761 S+D+L++ RSTFMVEM+ETA IL +AT++SFVI+DE+GRGT+TLDG+SIA + IE+L Sbjct: 700 SSDDLSNDRSTFMVEMVETAQILKKATDKSFVIMDEVGRGTSTLDGISIAQSVIEHLVSD 759 Query: 762 NRCRGLLATHFHELTD---------LSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADH 812 N+ R L ATH+HELT +SK +K N + + I+F HK+IPGIA+ Sbjct: 760 NKSRTLFATHYHELTKKLNQEQDQFISKKIK---NYCCIIKEHQGEILFAHKIIPGIANK 816 Query: 813 SYGIQVGKLAGLPNTVISRAYDILKTFE 840 SYGI KLA LP V++RA IL E Sbjct: 817 SYGIYCAKLANLPEKVLNRANSILTNLE 844 >gi|86158123|ref|YP_464908.1| DNA mismatch repair protein MutS [Anaeromyxobacter dehalogenans 2CP-C] gi|123497694|sp|Q2IIJ3|MUTS_ANADE RecName: Full=DNA mismatch repair protein mutS gi|85774634|gb|ABC81471.1| DNA mismatch repair protein MutS [Anaeromyxobacter dehalogenans 2CP-C] Length = 882 Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust. Identities = 326/832 (39%), Positives = 493/832 (59%), Gaps = 27/832 (3%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 + E ++ TPMMRQY+E K+ PD+++F+R+GDFYE+FF+DAL AS L ITLT R K Sbjct: 1 MPEIAQAHTPMMRQYLETKARYPDAILFFRLGDFYEMFFEDALTASEALQITLTARSK-- 58 Query: 78 GKD-IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTP 136 G D +PMCGVP H A Y+ +L++ G ++AIC+Q+E P G LV+R V R+VTP Sbjct: 59 GDDKVPMCGVPYHAARGYVARLLEKGFKVAICDQVEEP------GKSQLVKREVTRVVTP 112 Query: 137 GTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD-RLISDIMRIDPR 195 G + +DQ+L P ++++L AVA +A +D STG + + D RL+ ++ R R Sbjct: 113 GMVLDDQVLDPREASWLGAVALEGGRAGLALLDASTGQLQCGEVDGDERLVDELRRAGVR 172 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQ 254 E++FS A +++ +G A + F+ + E R+ + + ++D FG S Sbjct: 173 ELVFSSAA-DGARTEAIARAVGAPAARRDAAEFERA--EDRLRKHLGVPSLDGFGVSGLP 229 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-S 313 + +AAAAA++Y+ TQ + R L +D A R+NLE+ RTLSG R++ + Sbjct: 230 LGLSAAAAALAYLADTQRAAPRHVDRISRLSTDDVLLLDEATRTNLELERTLSGGRKKGT 289 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D ++T GGR AE + PL D +I RLD++ + + L+ D Sbjct: 290 LLALLDRTVTAPGGRRLAEWLRYPLADLARIGARLDAVEELSGASVAREELAGALRPVAD 349 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R LSRL +G+G +D+ + + + + ++ L+ LR A +L+ L ++L Sbjct: 350 LERLLSRLVLGQGNARDLRALAGALLALPALADV-LEARGAALLREAGGRLRGL-EALAA 407 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + ++++ P R+GGF+R G A LDE ++ + K IA L+ K E T I +LK+ Sbjct: 408 HLDAAVAEEPPATLREGGFIRRGHSAELDEIVAISEDGKGWIAGLEAKERERTGIGSLKV 467 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 + N GY++EVT + ++ KD E RQT RF T EL E ++ A Sbjct: 468 RFNKVFGYYLEVTKPNLHLVPKDWE------RRQTTVGGERFVTPELKGFEEKVLTAEER 521 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 +E FE L A+ ++ + A+ +A D ++LA +A E+ Y RP +D S Sbjct: 522 RAALEERLFEALRQAVAAEAPRVRTAADAVATADALLSLARVAAERGYVRPEVDASEALE 581 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLS---CPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 + DGRHP+VE L + ++ ND ++ P G L ++TGPNM GKST +RQ Sbjct: 582 IVDGRHPVVEAVLPDGPAA-YVPNDVLVASRGAPECAEHGALLVITGPNMAGKSTVMRQA 640 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 AL+V++AQMG++VPA A IG+VD++F+RVG++D+LA GRSTFMVEM ETA+IL+ AT + Sbjct: 641 ALVVLLAQMGAFVPARRARIGLVDRIFTRVGASDDLARGRSTFMVEMTETAAILHNATRR 700 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V+LDEIGRGT+T DG+SIAWA E+LH+ CR L ATH+HEL DL++ N T+ Sbjct: 701 SLVVLDEIGRGTSTFDGVSIAWAVAEHLHDVTGCRTLFATHYHELQDLARERPAVRNLTV 760 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 V + + ++FL K++ G A SYGI+V KLAGLP V++RA +ILK E + Sbjct: 761 AVREVGDRVVFLRKLVQGGASRSYGIEVAKLAGLPAEVLARAREILKNLEAM 812 >gi|313574737|emb|CBX26221.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] gi|313574739|emb|CBX26222.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] gi|313574741|emb|CBX26223.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] gi|313574743|emb|CBX26224.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] Length = 439 Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust. Identities = 264/438 (60%), Positives = 336/438 (76%) Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 N RLD++ + I + L + ++ LK D+PR+LSRL + RG P+D+ IR G+ S I Sbjct: 1 NARLDAVAYLIDDVSLCDGLRDALKHVADMPRALSRLALERGGPRDLGAIRQGLVSAEKI 60 Query: 405 LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDET 464 + LP+EL A+ L LP +LE L SML+DDLP KRDGGFLR+GA+ LDE Sbjct: 61 AVILDGGLLPDELAKALRDLNALPGALEAMLGSMLADDLPLLKRDGGFLREGANPELDEV 120 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 R+LRDQS+R+IA LQL+YA+ET IK+LKIKHNN LGYFIEVT+ +A V+ E+K RFI Sbjct: 121 RALRDQSRRVIAGLQLQYADETGIKSLKIKHNNVLGYFIEVTAGNADVMMATDEAKARFI 180 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 HRQTM+ RFTT EL DLE+RI NA AL IELE+FE + A+++Q+E++ + +A Sbjct: 181 HRQTMAGAMRFTTTELADLESRIANAAAEALTIELEAFERMVKAVVQQAEAIKAGAIALA 240 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 +ID++ +LA LA EQ YCRPI+D S F + GRHP+VE+ L++QS+ PFIAN+CDLS Sbjct: 241 VIDVASSLAYLATEQAYCRPIVDASMTFAITGGRHPVVEQALRRQSAGPFIANNCDLSAI 300 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 + +G +WLLTGPNMGGKSTFLRQNALI I+AQ+GS+VPA AHIG+VD+LFSRVG++D Sbjct: 301 DGGKNGAIWLLTGPNMGGKSTFLRQNALIAILAQIGSFVPAEAAHIGVVDRLFSRVGASD 360 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 +LA GRSTFMVEM+ETA+ILNQAT++S VILDEIGRGTAT DGLSIAWA +E+LHE NRC Sbjct: 361 DLARGRSTFMVEMVETAAILNQATDRSLVILDEIGRGTATFDGLSIAWAAVEHLHEVNRC 420 Query: 765 RGLLATHFHELTDLSKSL 782 RGL ATHFHELT LS+ L Sbjct: 421 RGLFATHFHELTVLSEKL 438 >gi|189030692|sp|A8MFD4|MUTS_ALKOO RecName: Full=DNA mismatch repair protein mutS Length = 880 Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust. Identities = 336/903 (37%), Positives = 539/903 (59%), Gaps = 55/903 (6%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 ++ TPMM+QY+EIK+ D+L+F+R+GDFYELFFDDA ASR L ITLT R L Sbjct: 1 MRKLTPMMQQYMEIKNQYKDALMFFRLGDFYELFFDDAETASRELEITLTARDCGLESKA 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H AN YI KL+ G+++AICEQ+E P AK +V+R+VVR++TPGTL + Sbjct: 61 PMCGVPYHAANGYIDKLVSKGYKVAICEQVEDPSVAK-----GIVKRDVVRVITPGTLID 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFK----ISTSNHDRLISDIMRIDPREI 197 LL +NYL+++ +++DISTG + TS LI +I +I+P E+ Sbjct: 116 TNLLEDKKNNYLVSLYMSSLGCGFSYVDISTGELLSTEIVGTSIEQNLIDEISKIEPNEL 175 Query: 198 IF---SEKELSHAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFG-SF 252 I+ E ++ + + + L N+ +++ + + F+ S + ++I + +NI TV++ G S Sbjct: 176 IYFVEEEDKIGTNFIEGIRKKL-NIHISKYDPWTFEESYAMNQIKNQFNILTVESLGFSL 234 Query: 253 SQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQS---TLFIDSAARSNLEILRTLSG- 308 + + A A I Y+K TQ K T+ + + +I + + +D + R NLE+ T+ G Sbjct: 235 NHLGINATGALIHYLKSTQ---KRTLSHINKINIYTFTEKMVLDISTRRNLELTETIRGK 291 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKIL 368 +++ SLL +D + T GGR+ + I PL + IN RL+++ + +L +++ L Sbjct: 292 NKKGSLLWILDKTQTAMGGRMIRKWIEEPLLNIQNINRRLEAVATLKNDILLRCELKESL 351 Query: 369 KSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKND--LPEELRGAVEKLKK 426 K D+ R ++ G P+D+ ++ + +I LF + L +EL ++ L+ Sbjct: 352 KQIYDLERLSGKIAFGSATPRDLVALKKSVAFLPDIKKLFENENSGLLKELLNNIDTLED 411 Query: 427 LPQSLEKTLSSMLSDDLPTFK-RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE 485 + +E SS+L D P+ +DGG +++G + LDE + K IA L+ + Sbjct: 412 IQALIE---SSIL--DEPSISLKDGGIIKEGYNDELDELYVAAREGKHWIAKLEQAEKDR 466 Query: 486 TKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 T IK+LK+ +N GY+IE+T S+ + + + +I +QT++N R+ T EL +LE+ Sbjct: 467 TGIKSLKVGYNKIFGYYIEITKSNLHL------APENYIRKQTLANCERYITPELKELED 520 Query: 546 RITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPI 605 +I A ++ IE E F + N ++ + E + ++ +A +D+ + A A E NY +P Sbjct: 521 KILGAEEKSIAIEYEQFIEIRNMLLHEIERIQRTARAVAELDVLYSFAEAASENNYVKPT 580 Query: 606 IDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKST 665 +++S +K+GRHP+VEK L+ + FI+ND ++ +++ L ++TGPNM GKST Sbjct: 581 VNSSETIDIKEGRHPVVEKVLE---NNMFISNDTYINTEDEQ----LLMITGPNMAGKST 633 Query: 666 FLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILN 725 ++RQ ALI++MAQ+GS+VPA+ A IGI D++F+RVG+ D+L+ G+STFMVEM E A+I+N Sbjct: 634 YMRQVALIILMAQIGSFVPATSATIGITDRIFTRVGANDDLSQGQSTFMVEMSEMATIVN 693 Query: 726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRF 785 AT +S +I+DEIGRGT+T DGLSIAW+T EY+ ++ R L +TH+HELT LS++ + Sbjct: 694 LATKKSLLIVDEIGRGTSTFDGLSIAWSTAEYICQSLGSRTLFSTHYHELTKLSETYRGI 753 Query: 786 HNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH 845 N + V + E +IFLHKV+ G AD SYGIQV KLAGLP +I+RA IL E+ Sbjct: 754 KNYKVLVKEDKEDVIFLHKVVKGNADRSYGIQVAKLAGLPAAIITRASHILSDLER--ES 811 Query: 846 NQKDMRLYYPEIQTKESKNNLSKNDKLF----------VEKIKCLNLDEMSPLTALKTLY 895 QK+ + + + + N+K V+ +K +NL E +P+ AL LY Sbjct: 812 IQKEQYIIESTAENTLTASTDVANEKQLKLDDFIESEIVKDLKKINLLETTPMDALNILY 871 Query: 896 AVK 898 ++ Sbjct: 872 QLQ 874 >gi|313574745|emb|CBX26225.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] Length = 439 Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust. Identities = 263/438 (60%), Positives = 335/438 (76%) Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 N RLD++ + I + L + ++ LK D+PR+LSRL + RG P+D+ IR G+ S I Sbjct: 1 NARLDAVAYLIDDVSLSDGLRDALKHVADMPRALSRLALERGGPRDLGAIRQGLVSAEKI 60 Query: 405 LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDET 464 + LP+EL A+ LK LP +LE L SML+DDLP KRDGGFLR+GA+ LDE Sbjct: 61 AVILDGGLLPDELAKALRDLKALPGALEAMLGSMLADDLPLLKRDGGFLREGANPELDEV 120 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 R+LRDQS+R+IA LQL+YA+ET IK+LKIKHNN LGYFIEVT+ +A V+ E+K RFI Sbjct: 121 RALRDQSRRVIAGLQLQYADETGIKSLKIKHNNVLGYFIEVTAGNADVMMATDEAKARFI 180 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 HRQTM+ RFTT EL DLE+RI NA AL +ELE+FE + A+++ +E++ + +A Sbjct: 181 HRQTMAGAMRFTTTELADLESRIANAAAEALTMELEAFERMVEAVVQHAEAIKAGALALA 240 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 +ID++ +LA LA EQ YCRPI+D S F + GRHP+VE+ L++QS+ PFIAN+CDLS Sbjct: 241 VIDVASSLAHLATEQAYCRPIVDASMTFAITGGRHPVVEQALRRQSAGPFIANNCDLSAI 300 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 +G +WLLTGPNMGGKSTFLRQNALI I+AQ+GS+VPA AHIG+VD+LFSRVG++D Sbjct: 301 GGGKNGAIWLLTGPNMGGKSTFLRQNALIAILAQIGSFVPAEAAHIGVVDRLFSRVGASD 360 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 +LA GRSTFMVEM+ETA+ILNQAT++S VILDEIGRGTAT DGLSIAWA +E+LHE NRC Sbjct: 361 DLARGRSTFMVEMVETAAILNQATDRSLVILDEIGRGTATFDGLSIAWAAVEHLHEVNRC 420 Query: 765 RGLLATHFHELTDLSKSL 782 RGL ATHFHELT LS+ L Sbjct: 421 RGLFATHFHELTVLSEKL 438 >gi|197122562|ref|YP_002134513.1| DNA mismatch repair protein MutS [Anaeromyxobacter sp. K] gi|238689851|sp|B4UCY7|MUTS_ANASK RecName: Full=DNA mismatch repair protein mutS gi|196172411|gb|ACG73384.1| DNA mismatch repair protein MutS [Anaeromyxobacter sp. K] Length = 882 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 335/903 (37%), Positives = 511/903 (56%), Gaps = 47/903 (5%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 + E ++ TPMMRQY+E K+ PD+++F+R+GDFYE+FF+DAL AS L ITLT R K Sbjct: 1 MPEIAQAHTPMMRQYLETKARYPDAILFFRLGDFYEMFFEDALTASEALQITLTARSK-- 58 Query: 78 GKD-IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTP 136 G D +PMCGVP H A Y+ +L++ G ++AIC+Q+E P G LV+R V R+VTP Sbjct: 59 GDDKVPMCGVPYHAARGYVARLLEKGFKVAICDQVEEP------GKSQLVKREVTRVVTP 112 Query: 137 GTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD-RLISDIMRIDPR 195 G + +DQ+L P ++++L AVA +A +D STG + + D RL+ ++ R R Sbjct: 113 GMVLDDQVLDPREASWLGAVALDDGRAGLALLDASTGQLQCGEVDGDERLVDELRRAGVR 172 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQ 254 E++FS A +++ +G A + F+ + E R+ + + ++D FG S Sbjct: 173 ELVFSSAA-DGARAEAIARAVGAPAARRDAAEFERA--EDRLRKHLGVPSLDGFGVSGLP 229 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-S 313 + AAAAA++Y+ TQ + R L +D A R+NLE+ RTLSG R++ + Sbjct: 230 LGLAAAAAALAYLADTQRAAPRHVDRISRLSTDDVLLLDEATRTNLELERTLSGGRKKGT 289 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D ++T GGR AE + PLTD +I RLD++ + + L+ D Sbjct: 290 LLALLDRTVTAPGGRRLAEWLRYPLTDLARIGARLDAVEELTGAAVAREELALALRPVAD 349 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R LSRL +G+G +D+ + + + + + LR A +L+ L ++L Sbjct: 350 LERLLSRLVLGQGNARDLRALAGALLALPALAAVLEARG-AARLREAGARLRGL-EALAA 407 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + ++++ P R+GG +R G A LDE ++ + K IA+L+ K E T I +LK+ Sbjct: 408 HLDAAVAEEPPATLREGGIIRRGHSAELDEIVAIAEDGKGWIAALEAKERERTGIGSLKV 467 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 + N GY++EVT + ++ KD E RQT RF T EL LE ++ A Sbjct: 468 RFNKVFGYYLEVTRPNLHLVPKDWE------RRQTTVGGERFVTPELKTLEEKVLTAEER 521 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 +E FE L A+ ++ + A+ +A D ++L+ +A E+ Y RP +D S Sbjct: 522 RAALEERLFEALRQAVAAEAPRVRTAADAVATADALLSLSRVAAERGYVRPEVDASEALE 581 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLS---CPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 + DGRHP+VE L + ++ ND ++ P G L ++TGPNM GKST +R+ Sbjct: 582 IVDGRHPVVEAVLPDGPAA-YVPNDVLVASRDAPECAEHGALLVITGPNMAGKSTVMREA 640 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 AL+V++AQMG++VPA A IG+VD++F+RVG++D+LA GRSTFMVEM ETA+IL+ AT + Sbjct: 641 ALVVLLAQMGAFVPARRARIGLVDRIFTRVGASDDLARGRSTFMVEMTETAAILHNATRR 700 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V+LDEIGRGT+T DG+SIAWA E+LH+ CR L ATH+HEL DL++ N T+ Sbjct: 701 SLVVLDEIGRGTSTFDGVSIAWAVAEHLHDVTGCRTLFATHYHELQDLARERPAVRNLTV 760 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM 850 V + + ++FL K++ G A SYGI+V KLAGLP V++RA +ILK E + Sbjct: 761 AVREVGDRVVFLRKLVQGGASRSYGIEVAKLAGLPAEVLARAREILKNLEAMEVDEGG-- 818 Query: 851 RLYYPEIQTKESKNNLSKNDKL---------------FVEKIKCLNLDEMSPLTALKTLY 895 +P + + +L + I+ ++LD + PL AL L Sbjct: 819 ---HPALARGRRRRAGPSAAQLGLFGGGAAADPAAEEVAKAIRAIDLDALRPLDALNLLA 875 Query: 896 AVK 898 K Sbjct: 876 GWK 878 >gi|313574733|emb|CBX26219.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] Length = 439 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 267/438 (60%), Positives = 339/438 (77%) Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 N RLD++ + I + L + ++ LK D+PR+LSRL + RG P+D+ IR G+ S +I Sbjct: 1 NARLDAVAYLIDDVSLCDGLRDALKQVADMPRALSRLALERGGPRDLGAIRQGLASAESI 60 Query: 405 LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDET 464 + + LP+EL A+ LK LP LE L SML+DDLP KRDGGFLR+GA+ LDE Sbjct: 61 AAILDQGLLPDELAAALADLKALPGGLEAMLGSMLADDLPLLKRDGGFLREGANPELDEV 120 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 R+LRDQS+R+IA LQLKYA+ET IK+LKIKHNN LGYFIEVT+ +A V+ E+K RFI Sbjct: 121 RALRDQSRRVIAGLQLKYADETGIKSLKIKHNNVLGYFIEVTAGNADVMTATDEAKARFI 180 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 HRQTM+ RFTT EL DLE+RI NA AL +ELE+FE + A+++Q+E++ + +A Sbjct: 181 HRQTMAGAMRFTTTELADLESRIANAAAQALTMELEAFERMVKAVVQQAEAIKAGALALA 240 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 +ID++ +LA LA EQ YCRPI+D S F +K GRHP+VE+ L++QS+ PFIAN+CDLS Sbjct: 241 VIDVASSLAYLATEQAYCRPIVDASMTFAIKGGRHPVVEQALRRQSAGPFIANNCDLSAV 300 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 N +G +WLLTGPNMGGKSTFLRQNALI I+AQ+GS+VPA AHIG+VD+LFSRVG++D Sbjct: 301 NGGKNGAIWLLTGPNMGGKSTFLRQNALIAILAQIGSFVPAKAAHIGVVDRLFSRVGASD 360 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 +LA GRSTFMVEM+ETA+ILNQAT++S VILDEIGRGTAT DGLSIAWA +E+LHE NRC Sbjct: 361 DLARGRSTFMVEMVETAAILNQATDRSLVILDEIGRGTATFDGLSIAWAAVEHLHEVNRC 420 Query: 765 RGLLATHFHELTDLSKSL 782 RGL ATHFHELT LS+ L Sbjct: 421 RGLFATHFHELTVLSEKL 438 >gi|313574735|emb|CBX26220.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] Length = 439 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 267/438 (60%), Positives = 339/438 (77%) Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 N RLD++ + I + L + ++ LK D+PR+LSRL + RG P+D+ IR G+ S +I Sbjct: 1 NARLDAVAYLIDDVSLCDGLRDALKQVADMPRALSRLALERGGPRDLGAIRQGLASAESI 60 Query: 405 LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDET 464 + + LP+EL A+ LK LP LE L SML+DDLP KRDGGFLR+GA+ LDE Sbjct: 61 AAILDQGLLPDELAAALADLKALPGGLEAMLGSMLADDLPLLKRDGGFLREGANPELDEV 120 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 R+LRDQS+R+IA LQLKYA+ET IK+LKIKHNN LGYFIEVT+ +A V+ E+K RFI Sbjct: 121 RALRDQSRRVIAGLQLKYADETGIKSLKIKHNNVLGYFIEVTAGNADVMTATDEAKARFI 180 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 HRQTM+ RFTT EL DLE+RI NA AL +ELE+FE + A+++Q+E++ + +A Sbjct: 181 HRQTMAGAMRFTTTELADLESRIANAAAQALTMELEAFERMVKAVVQQAETIKAGALALA 240 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 +ID++ +LA LA EQ YCRPI+D S F +K GRHP+VE+ L++QS+ PFIAN+CDLS Sbjct: 241 VIDVASSLAYLATEQAYCRPIVDASMTFAIKGGRHPVVEQALRRQSAGPFIANNCDLSAV 300 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 N +G +WLLTGPNMGGKSTFLRQNALI I+AQ+GS+VPA AHIG+VD+LFSRVG++D Sbjct: 301 NGGKNGAIWLLTGPNMGGKSTFLRQNALIAILAQIGSFVPAEAAHIGVVDRLFSRVGASD 360 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 +LA GRSTFMVEM+ETA+ILNQAT++S VILDEIGRGTAT DGLSIAWA +E+LHE NRC Sbjct: 361 DLARGRSTFMVEMVETAAILNQATDRSLVILDEIGRGTATFDGLSIAWAAVEHLHEVNRC 420 Query: 765 RGLLATHFHELTDLSKSL 782 RGL ATHFHELT LS+ L Sbjct: 421 RGLFATHFHELTVLSEKL 438 >gi|153853167|ref|ZP_01994576.1| hypothetical protein DORLON_00561 [Dorea longicatena DSM 13814] gi|149753953|gb|EDM63884.1| hypothetical protein DORLON_00561 [Dorea longicatena DSM 13814] Length = 876 Score = 565 bits (1457), Expect = e-158, Method: Compositional matrix adjust. Identities = 331/895 (36%), Positives = 528/895 (58%), Gaps = 50/895 (5%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY++ K PD ++FYR+GDFYE+FFDDAL AS+ L ITLT + L + PMCGVP Sbjct: 1 MMQQYMQTKKEYPDCILFYRLGDFYEMFFDDALTASKELEITLTGKNCGLEERAPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H + Y+ +L+ G+++AICEQ+E P AK LV+R+VVR+VTPGT + Q L Sbjct: 61 YHAVDGYLNRLVSKGYKVAICEQMEDPATAK-----GLVKRDVVRIVTPGTNLDTQALDE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEK-ELS 205 T +NY+M +A + ++ D+STG + ++ N ++L +I + P E+I +E +S Sbjct: 116 TKNNYIMCIAYASDHYGVSVADVSTGEYMVTEIENSEKLFDEIYKFMPSELICNEAFYMS 175 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAI 264 +++ L E LG + + +FD +I E + ++++ T++ G + AA A + Sbjct: 176 GMDFELLKEKLGITVYSLDSWYFDDAICERILKEHFHAGTIEGLGLADYDCGVIAAGALM 235 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT 323 Y+ +TQ + I + + +DS+ R NLE+ TL +++ SLL +D + T Sbjct: 236 QYLVETQKRDLSHISHLTIYAAGKYMLLDSSTRRNLELCETLRDKQKRGSLLWVLDKTKT 295 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G R + I PL D I RLD+++ ++N I I++ L D+ R + ++ Sbjct: 296 AMGARTLRKYIEQPLIDKNAIEKRLDAVDELMKNAISREEIREYLSPVYDLERLVCKITY 355 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 P+D+ + + +I + P L+ E+L L + L K +S + +D Sbjct: 356 QSANPRDLIAFQTSLAMLPHIKCILSDMQTPL-LKELYEELDTL-EDLCKLVSDSIREDP 413 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P ++GG ++DG +A +D+ R+ + K +A L+ E+T IKNL+IK+N GY++ Sbjct: 414 PIAMKEGGIIKDGYNAEVDKLRNAKSDGKDWLAKLETDEREKTGIKNLRIKYNKVFGYYL 473 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EVT+S KDL D + +QT++N R+ EL +LE+ I A + +E + + Sbjct: 474 EVTNSF-----KDL-VPDYYTRKQTLANAERYIIPELKELEDTILGAEDKLYALEYQLYS 527 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 + + I ++ + ++ IA +D +LA++A++ NY RP +++ +KDGRHP+VE Sbjct: 528 EVRDTIGKEVVRIQKTAKAIAKLDAFASLALVAEQNNYVRPKMNDKGLIDIKDGRHPVVE 587 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 K + S+ FI ND L NDK ++ ++TGPNM GKST++RQ ALIV+MAQ+GS+V Sbjct: 588 KMI---SNDMFICNDTYL---NDKKD-RISIITGPNMAGKSTYMRQTALIVLMAQIGSFV 640 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PAS A+IG+VD++F+RVG++D+LASG+STFMVEM E A+IL AT++S +ILDEIGRGT+ Sbjct: 641 PASSANIGVVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSKSLLILDEIGRGTS 700 Query: 744 TLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 T DGLSIAWA IEY+ + + L ATH+HELT+L ++ +N + V + + IIF Sbjct: 701 TFDGLSIAWAVIEYISNSKLLGAKTLFATHYHELTELEGKIENVNNYCIAVKEKGDDIIF 760 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM--RLYYPEIQT 859 L K++ G AD SYGIQV +LAG+P +V RA +I++ Q D+ R+ E+Q Sbjct: 761 LRKIVKGGADKSYGIQVARLAGVPQSVTDRAKEIVEEL------VQADVTGRIKDIEVQG 814 Query: 860 KESKNNLSKN----------------DKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +ES +K+ D +++IK L+L ++P+ AL TLY ++ Sbjct: 815 QESSKQKTKHFDEVDLAQMSLFDTVKDDDVIKEIKDLDLANLTPIDALNTLYQLQ 869 >gi|254442076|ref|ZP_05055552.1| DNA mismatch repair protein MutS [Verrucomicrobiae bacterium DG1235] gi|198256384|gb|EDY80692.1| DNA mismatch repair protein MutS [Verrucomicrobiae bacterium DG1235] Length = 869 Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust. Identities = 333/852 (39%), Positives = 493/852 (57%), Gaps = 56/852 (6%) Query: 23 KSSTPMMRQYIEIKSINP-DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 K TPMM+QY E+K P ++L+ +R+GDFYE+F +DA+ ++ LGITLTKR D Sbjct: 5 KKITPMMQQYYEVKKGLPANTLLLFRLGDFYEMFHEDAVTGAQVLGITLTKR-----SDY 59 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 M G+P H A YI K++KIG ++AIC+Q+E+P K LV+R + R++TPGT E Sbjct: 60 QMAGIPFHAAEQYISKVLKIGMKVAICDQVETPQAGK------LVKRALTRILTPGTTIE 113 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFS 200 D L ++YL A+ ++ +++AWID+STG F+I+ S D L+ ++ IDP E++ Sbjct: 114 DNQLDSQRNHYLAAIEYDKSGFSLAWIDLSTGEFRIAHDSKPDDLLPVLVSIDPAELLLI 173 Query: 201 EKELSHAEYKS----LFETLGNVAVA-----QPNVFFDHSISESRIADYYNITTVDTFGS 251 E +S +FE L + A + QP FD + D + ++ FG Sbjct: 174 EGTQESWRKQSHNNPVFEELIHFANSRSTSEQPGFQFDSDSGAQSVMDILGVINLEGFGI 233 Query: 252 FSQVEKTAAAAAISYIKKTQMVNKPTIGYPERE-DIQSTLFIDSAARSNLEILRTLSGSR 310 + A A+ + + +KP RE +++L ID A NLEI ++ G R Sbjct: 234 EKTHDALGCAGALLHYANETLCSKPENLSSIREYSAKASLLIDPATLRNLEIFKSTRGLR 293 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 E SL++ I+ T AG RL + + +P D ++N RLDS+ F +NP+ +Q LKS Sbjct: 294 EGSLIEAINGCKTAAGARLLEQWLIAPERDIPELNRRLDSVEQFFRNPMAATELQTTLKS 353 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGA-------- 420 DV R LSR+ P+++ IRD ++ I +L D+P + A Sbjct: 354 VRDVKRILSRMLNRLRNPRELGGIRDTLQQIPEIRSLVEEASPDVPPDANSAGSQFTTHS 413 Query: 421 -----VEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRII 475 + +L LP +L + L L ++LP+ DGG++ G D LD SL +K + Sbjct: 414 SLLTILHRLHPLP-ALAELLDRALKEELPSKLDDGGYIAKGYDPELDRMLSLTTDNKVWL 472 Query: 476 ASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRF 535 A L+ E T IKNLK+K+N GYFIEVT S+ + + ++ +I +QT N RF Sbjct: 473 ADLESTERERTGIKNLKVKYNGAFGYFIEVTKSNLANVPEN------YIRKQTTVNAERF 526 Query: 536 TTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAIL 595 T +L E I +A ++ E E F L AI+E+S +L ++ +A +D+ + + Sbjct: 527 ITEDLKAKEKEIFHAEENSKRREEELFLGLIEAILEESSALTETAEALAELDVFCGWSEI 586 Query: 596 AKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQS-----SKPFIANDCDLSCPNDKNSG 650 A+ ++C+P +D S + GRHP+VE+ L++ + S F+ ND +S + Sbjct: 587 ARRWDFCKPELDESDRLEISQGRHPVVEQMLRKDTQGLAGSHAFVPNDIGISA----SEN 642 Query: 651 KLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGR 710 ++ L+TGPNM GKSTF+RQ ALI +MAQ+G +VPAS A IG+VD++FSRVG++D+LA G Sbjct: 643 QIHLITGPNMAGKSTFIRQVALITLMAQVGCWVPASAAKIGVVDRIFSRVGASDDLARGN 702 Query: 711 STFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC--RGLL 768 STFMVEM ETA+ILN AT +S +ILDEIGRGT+T DGLSIAW+ IE+LH + L Sbjct: 703 STFMVEMNETANILNNATERSLIILDEIGRGTSTYDGLSIAWSVIEHLHRDPETGPKTLF 762 Query: 769 ATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTV 828 ATH+ ELT L K L R N ++ V + N+ I+F+ +V+ G AD SYGIQV +LAGLP V Sbjct: 763 ATHYQELTQLDKHLGRLENYSVAVKEWNDDIVFVRQVVKGAADRSYGIQVARLAGLPTPV 822 Query: 829 ISRAYDILKTFE 840 I RA +IL+ E Sbjct: 823 IDRAKEILQRLE 834 >gi|313574731|emb|CBX26218.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] Length = 439 Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust. Identities = 268/438 (61%), Positives = 338/438 (77%) Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 N RLD++ + I + L + ++ LK D+PR+LSRL + RG P+D+ IR G+ S I Sbjct: 1 NARLDAVAYLIDDVSLCDGLRDALKHVADMPRALSRLALERGGPRDLGAIRLGLVSAEKI 60 Query: 405 LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDET 464 + LP+EL A+ LK LP LE L SML+DDLP KRDGGFLR+GA+ LDE Sbjct: 61 AAILDDGLLPDELAAALADLKALPSGLEAMLGSMLADDLPLLKRDGGFLREGANPELDEV 120 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 R+LRDQS+R+IA LQLKYA+ET IK+LKIKHNN LGYFIEVT+ +A V+ E+K RFI Sbjct: 121 RALRDQSRRVIAGLQLKYADETGIKSLKIKHNNVLGYFIEVTAGNADVMTATDEAKARFI 180 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 HRQTM+ RFTT EL DLE+RI NA AL +ELE+FE + A+++Q+E++ + +A Sbjct: 181 HRQTMAGAMRFTTTELADLESRIANAAAQALTMELEAFERMVKAVVQQAEAIKAGALALA 240 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 +ID++ +LA LA EQ YCRPI+D S F +K GRHP+VE+ L++QS+ PFIAN+CDLS Sbjct: 241 VIDVASSLAYLATEQAYCRPIVDASMTFAIKGGRHPVVEQALRRQSAGPFIANNCDLSAV 300 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 ND +G +WLLTGPNMGGKSTFLRQNALI I+AQ+GS+VPA AHIG+VD+LFSRVG++D Sbjct: 301 NDGKNGAIWLLTGPNMGGKSTFLRQNALIAILAQIGSFVPAEAAHIGVVDRLFSRVGASD 360 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 +LA GRSTFMVEM+ETA+ILNQAT++S VILDEIGRGTAT DGLSIAWA +E+LHE NRC Sbjct: 361 DLARGRSTFMVEMVETAAILNQATDRSLVILDEIGRGTATFDGLSIAWAAVEHLHEVNRC 420 Query: 765 RGLLATHFHELTDLSKSL 782 RGL ATHFHELT LS+ L Sbjct: 421 RGLFATHFHELTVLSEKL 438 >gi|313574729|emb|CBX26217.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] Length = 439 Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust. Identities = 267/438 (60%), Positives = 337/438 (76%) Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 N RLD++ + I + L + ++ LK D+PR+LSRL + RG P+D+ IR G+ S I Sbjct: 1 NARLDAVAYLIDDVSLCDGLRDALKQVADMPRALSRLALERGGPRDLGAIRQGLASAEKI 60 Query: 405 LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDET 464 + + LP+EL A+ LK LP LE L SML+DDLP KRDGGFLR+GA+ LDE Sbjct: 61 AAILDQGLLPDELAAALADLKALPGGLEAMLGSMLADDLPLLKRDGGFLREGANPELDEV 120 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 R+LRDQS+R+IA LQLKYA+ET IK+LKIKHNN LGYFIEVT+ +A V+ E+K RFI Sbjct: 121 RALRDQSRRVIAGLQLKYADETGIKSLKIKHNNVLGYFIEVTAGNADVMMATDEAKARFI 180 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 HRQTM+ RFTT EL DLE+RI NA AL +ELE+FE + A++ Q+E++ + +A Sbjct: 181 HRQTMAGAMRFTTTELADLESRIANAAAQALTMELEAFERMVKAVVHQAEAIKAGALALA 240 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 +ID++ +LA LA EQ YCRPI+D S F +K GRHP+VE+ L++QS+ PFIAN+CDLS Sbjct: 241 VIDVASSLAYLATEQAYCRPIVDASMTFAIKGGRHPVVEQALRRQSAGPFIANNCDLSAV 300 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 N +G +WLLTGPNMGGKSTFLRQNALI I+AQ+GS+VPA AHIG+VD+LFSRVG++D Sbjct: 301 NGGKNGAIWLLTGPNMGGKSTFLRQNALIAILAQIGSFVPAEAAHIGVVDRLFSRVGASD 360 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 +LA GRSTFMVEM+ETA+ILNQAT++S VILDEIGRGTAT DGLSIAWA +E+LHE NRC Sbjct: 361 DLARGRSTFMVEMVETAAILNQATDRSLVILDEIGRGTATFDGLSIAWAAVEHLHEVNRC 420 Query: 765 RGLLATHFHELTDLSKSL 782 RGL ATHFHELT LS+ L Sbjct: 421 RGLFATHFHELTVLSEKL 438 >gi|313574661|emb|CBX26183.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] gi|313574675|emb|CBX26190.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] Length = 439 Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust. Identities = 266/438 (60%), Positives = 335/438 (76%) Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 N RLD++ + I + L + ++ LK D+PR+LSRL + RG P+D+ IR G+ S I Sbjct: 1 NARLDAVAYLIDDVSLCDGLRDALKQVADMPRALSRLALERGGPRDLGAIRQGLASAERI 60 Query: 405 LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDET 464 + + LPEEL A+ L LP LE L SML+DDLP KRDGGFLR+GA+ LDE Sbjct: 61 AAILDQGLLPEELAAALADLMALPGGLEAMLGSMLADDLPLLKRDGGFLREGANPELDEV 120 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 R+LRDQS+R+IA LQL+YAEET IK+LKIKHNN LGYFIEVT+ +A V+ E+K RFI Sbjct: 121 RALRDQSRRVIAGLQLQYAEETGIKSLKIKHNNVLGYFIEVTAGNADVMMATDEAKARFI 180 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 HRQTM+ RFTT EL DLE+RI NA AL +ELE+FE + A+++Q+E++ + +A Sbjct: 181 HRQTMAGAMRFTTTELADLESRIANAAAEALTMELEAFERMVEAVVQQAEAIKAGALALA 240 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 +ID++ +LA LA EQ YCRPI+D S F + GRHP+VE+ L++QS+ PFIAN+CDLS Sbjct: 241 VIDVASSLAYLATEQAYCRPIVDASMTFAITGGRHPVVEQALRRQSAGPFIANNCDLSAA 300 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 +G +WLLTGPNMGGKSTFLRQNALI I+AQ+GS+VPA AHIGIVD+LFSRVG++D Sbjct: 301 EGGKNGAIWLLTGPNMGGKSTFLRQNALIAILAQIGSFVPAEAAHIGIVDRLFSRVGASD 360 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 +LA GRSTFMVEM+ETA+ILNQAT++S VILDEIGRGTAT DGLSIAWA +E+LHE NRC Sbjct: 361 DLARGRSTFMVEMVETAAILNQATDRSLVILDEIGRGTATFDGLSIAWAAVEHLHEVNRC 420 Query: 765 RGLLATHFHELTDLSKSL 782 RGL ATHFHELT LS+ L Sbjct: 421 RGLFATHFHELTVLSEKL 438 >gi|296132996|ref|YP_003640243.1| DNA mismatch repair protein MutS [Thermincola sp. JR] gi|296031574|gb|ADG82342.1| DNA mismatch repair protein MutS [Thermincola potens JR] Length = 882 Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust. Identities = 332/900 (36%), Positives = 514/900 (57%), Gaps = 50/900 (5%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + S TPM++QY+EIKS PD+++F+R+GDFYE+FF+DA AS+ L ITLT R K + Sbjct: 1 MSSYTPMIQQYLEIKSQYPDAILFFRLGDFYEMFFEDAEKASKELEITLTARDGGNDKKV 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H A YI KLI G+ +AICEQ+E P AK +V+R V+R++TPGT+ E Sbjct: 61 PMCGVPFHAATTYIAKLINKGYNVAICEQVEDPGAAK-----GIVKREVIRVITPGTVLE 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS----TSNHDRLISDIMRIDPREI 197 + +L +N+L+AV + + +A D+STG F ++ ++LI +I R+ P E Sbjct: 116 ENMLDEKQNNFLIAVNKDDFGYGLAVADVSTGYFAVTELRGAKALNQLIDEISRLQPVEC 175 Query: 198 IFSEKELSHAEYKSLFETLGNVAVA---QPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 + + + + + + E L V ++ +V F + S + ++ +++ FG Sbjct: 176 LIPDNLVKNMDLTT--EILKQVKLSLHSYSSVHFSIKNATSTLLRHFATGSLEGFGCLEM 233 Query: 255 -VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQ 312 V + A A ++++ +TQ + I S + +D + R NLE+ RT+ SR+ Sbjct: 234 SVGISCAGALMAFLAETQKNSLKHINKLIPYTTTSYMLLDPSTRRNLELTRTIRDSSRKG 293 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 +LL +DY+ T GGRL + PLTD T I TRLD++ + N + +QK+ Sbjct: 294 TLLWVLDYTQTAMGGRLLKTWLEQPLTDITAIETRLDTVEELVNNVFMRGDLQKLFTEVY 353 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP--QS 430 D+ R R+ G +D+ ++ ++ + + K P G ++ ++L + Sbjct: 354 DLERLAGRIAFGSANARDLIALKKSLQVLPKVKEILEKAYSP----GLIQLYRQLDILED 409 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 + + S + D+ P RDGG ++ G + +D R K IA L+ + E T IK+ Sbjct: 410 VASLIESAIDDNPPITLRDGGIIKKGYNEEIDRLRKASRDGKTWIAELERREKERTGIKS 469 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ +N GY+IEVT ++ + D +I +QT++N RF T +L + E+ I A Sbjct: 470 LKVGYNKVFGYYIEVTRANLDAVPDD------YIRKQTLANAERFITPDLKEYESLILGA 523 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 +E E F+ + I + + A+ ++A +D+ IA A A NY +PII++ Sbjct: 524 EEKITQLEYELFQAVREKISNSTARIQQAASIVAQLDVYIAFAEAAIRNNYTKPIINDDG 583 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSG-KLWLLTGPNMGGKSTFLRQ 669 + DGRHP+VEK + + S F+ ND L C SG ++ ++TGPNM GKST++RQ Sbjct: 584 IIKITDGRHPVVEKFMPEGS---FVPNDTYLDC-----SGYRMDIITGPNMAGKSTYMRQ 635 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALIV+MAQ+GSYVPAS A IGIVD++F+RVG++D+LA+G+STFMVEM E A+ILN AT Sbjct: 636 VALIVLMAQIGSYVPASEARIGIVDRIFTRVGASDDLATGQSTFMVEMNEVANILNNATA 695 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHN 787 +S +ILDE+GRGT+T DGLSIAWA EY+ + + + L ATH+HELT+L+ N Sbjct: 696 KSLIILDEVGRGTSTFDGLSIAWAVAEYILDPEKIGAKTLFATHYHELTELADIYPGVQN 755 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ 847 + V + + IIFL K+IPG AD SYGIQV +LAGLP V+ +A +IL+T E + + Sbjct: 756 HNIAVKEKGDDIIFLRKIIPGGADRSYGIQVARLAGLPGEVLGKAKEILRTLE--VNEDA 813 Query: 848 KDMRLYYPEIQTKESKNNLSKNDKLFVE---------KIKCLNLDEMSPLTALKTLYAVK 898 + + K S N ++F E +I L+L ++PL AL LY ++ Sbjct: 814 VKTKREVAAARKKCSDGNNVIQLRMFDEPAAGDAVAKEILSLDLLNLTPLEALNYLYKLQ 873 >gi|150390307|ref|YP_001320356.1| DNA mismatch repair protein MutS [Alkaliphilus metalliredigens QYMF] gi|172052479|sp|A6TR79|MUTS_ALKMQ RecName: Full=DNA mismatch repair protein mutS gi|149950169|gb|ABR48697.1| DNA mismatch repair protein MutS [Alkaliphilus metalliredigens QYMF] Length = 880 Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust. Identities = 342/907 (37%), Positives = 530/907 (58%), Gaps = 71/907 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY +IK PDSL+F+RMGDFYELFF DA ASR L ITLT R L + PMCG Sbjct: 5 TPMMQQYFDIKKQYPDSLLFFRMGDFYELFFQDAETASRELEITLTGRSCGLEERAPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A YI +L+ G+++AICEQIE +AK +V+R+VVR++TPGTL + QLL Sbjct: 65 VPHHAATGYIDRLVSNGYKVAICEQIEDVSQAK-----GIVKRDVVRVITPGTLIDTQLL 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IF--KISTSNHDRLISDIM-RIDPREIIF-- 199 +NYLM+V RT + +A++DISTG +F +I + H +++ D M R+ P+E+++ Sbjct: 120 DDKKNNYLMSVFGSRTGFGLAYVDISTGDLFATEIKENIHPQMLIDEMGRVLPQELLYFI 179 Query: 200 -SEKE----LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSF-S 253 ++KE +S + + F T G + + F + ++I D++N+ +++ G S Sbjct: 180 ETDKEDPTIISMIKKRFDFYTNGYEEWSYEDTF-----ALNQIKDHFNVVSLEGLGFHPS 234 Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQ 312 + AA A Y+K TQ I + I + +D R NLE+ T+ S S++ Sbjct: 235 HLGINAAGALFHYLKTTQKRALEHINHINVYSIHEKMTLDINTRKNLELTETIRSKSKKG 294 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 SLL +D + T GGR+ + I +PL D IN RL+++ + L +++ LK Sbjct: 295 SLLGVLDKTSTAMGGRMLRKWIEAPLIDPVIINKRLEAVQLLKEQIELRQELKESLKKIY 354 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE 432 D+ R ++ G P+D+ +++ + +I+N E+++G E + L QS++ Sbjct: 355 DLERLAGKISYGSVTPRDLIALKNSLSYLPSIINGL------EKIQG--ETFQSLVQSID 406 Query: 433 --KTLSSMLS----DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 + S++ +D P +DGG +++G +DE ++ + ++ IA L+ K + Sbjct: 407 PLDEVHSLVELSILEDAPLSSKDGGIIQEGYHKEVDELKNASTEGRQWIAQLEQKERVNS 466 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 IK+LKIK+N GY+IE+T S+ S++ + +I +QT++N R+ T EL ++E++ Sbjct: 467 GIKSLKIKYNKIFGYYIEITKSNLSMVPTE------YIRKQTLANCERYVTPELKEIESK 520 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 I A +L+E F + I + + ++ IA +D+ + A +A E N+ +P I Sbjct: 521 ILGAEEKVILLEYHLFIEVREKIAHEITRIQQTARAIAELDVLYSFAEIAAENNFIKPHI 580 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 + S + +GRHP+VE T ++S F+ ND + D + ++TGPNM GKST+ Sbjct: 581 NTSNEIKIVEGRHPVVELTFNKES---FVPNDTYM----DNRDCSMSIITGPNMAGKSTY 633 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ ALIV+MAQ+GS+VPAS A IGIVD++F+R+G++D+LA G STFMVEM E A+ILN Sbjct: 634 MRQVALIVLMAQIGSFVPASEASIGIVDRIFTRIGASDDLAQGHSTFMVEMSEMANILNN 693 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT S VILDEIGRGT+T DGLSIAWA IEY+ + + + L +TH+HELT+L ++ Sbjct: 694 ATANSLVILDEIGRGTSTFDGLSIAWAVIEYMQQYKKSKTLFSTHYHELTELEGKIQGVK 753 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN 846 N + V + E I+FL KV+ G SYGIQV KLAGLP + RA +IL EK Sbjct: 754 NYNILVEEDGEEIVFLRKVVSGSTSKSYGIQVAKLAGLPLNTLIRAQEILSDLEK----- 808 Query: 847 QKDMRLYYP---EIQ-TKESKNNLSKNDKL-----------FVEKIKCLNLDEMSPLTAL 891 K+ + P EI ++ES+ N + + +E I+ LNL E +P+TA+ Sbjct: 809 -KNNEIKIPAEEEIALSRESEGNSRDTNGIQLDLTSFSYNEIIEDIRSLNLLETTPMTAM 867 Query: 892 KTLYAVK 898 LY ++ Sbjct: 868 NLLYQLQ 874 >gi|313574669|emb|CBX26187.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] Length = 439 Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust. Identities = 266/438 (60%), Positives = 337/438 (76%) Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 N RLD++ + I + L + ++ LK D+PR+LSRL + RG P+D+ IR G+ S I Sbjct: 1 NARLDAVAYLIDDVSLCDGLRDALKQVADMPRALSRLALERGGPRDLGAIRQGLASAERI 60 Query: 405 LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDET 464 + + LP+EL A+ LK LP LE L SML+DDLP KRDGGFLR+GA+ LD+ Sbjct: 61 AAILDQGLLPQELAAALADLKALPGGLEAMLGSMLADDLPLLKRDGGFLREGANPELDDV 120 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 R+LRDQS+R+IA LQL+YAEET IK+LKIKHNN LGYFIEVT+ +A V+ E+K RFI Sbjct: 121 RALRDQSRRVIAGLQLQYAEETGIKSLKIKHNNVLGYFIEVTAGNADVMMATDEAKARFI 180 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 HRQTM+ RFTT EL DLE+RI NA AL +ELE+FE + A+++Q+E++ + +A Sbjct: 181 HRQTMAGAMRFTTTELADLESRIANAAAEALTMELEAFERMVEAVVQQAEAIKAGALALA 240 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 +ID++ +LA LA EQ YCRPI+D S F +K GRHP+VE+ L++QS+ PFIAN+CDLS Sbjct: 241 VIDVASSLAYLATEQAYCRPIVDASMTFAIKGGRHPVVEQALRRQSAGPFIANNCDLSAA 300 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 +G +WLLTGPNMGGKSTFLRQNALI I+AQ+GS+VPA AHIGIVD+LFSRVG++D Sbjct: 301 EGGKNGAIWLLTGPNMGGKSTFLRQNALIAILAQIGSFVPAEAAHIGIVDRLFSRVGASD 360 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 +LA GRSTFMVEM+ETA+ILNQAT++S VILDEIGRGTAT DGLSIAWA +E+LHE NRC Sbjct: 361 DLARGRSTFMVEMVETAAILNQATDRSLVILDEIGRGTATFDGLSIAWAAVEHLHEVNRC 420 Query: 765 RGLLATHFHELTDLSKSL 782 RGL ATHFHELT LS+ L Sbjct: 421 RGLFATHFHELTVLSEKL 438 >gi|313574751|emb|CBX26228.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] Length = 439 Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust. Identities = 265/438 (60%), Positives = 340/438 (77%) Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 N RLD++ + I + L + ++ LK D+PR+LSRL + RG P+D+ IR G+ S I Sbjct: 1 NARLDAVAYLIDDVSLCDGLRDALKQVADMPRALSRLALERGGPRDLGAIRQGLASAEKI 60 Query: 405 LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDET 464 + + LP+EL A+ LK LP LE L SML+D+LP KRDGGFLR+GA++ LDE Sbjct: 61 AAILDQGLLPDELAAALADLKALPGGLEAMLGSMLADELPLLKRDGGFLREGANSELDEV 120 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 R+LRDQS+R+IA LQL+YA+ET IK+LKIKHNN LGYFIEVT+ +A V+ E+K RFI Sbjct: 121 RALRDQSRRVIAGLQLRYADETGIKSLKIKHNNVLGYFIEVTAGNADVMTTTDEAKARFI 180 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 HRQTM+ RFTT EL DLE+RI NA AL +ELE+FE + A+++Q+E++ + +A Sbjct: 181 HRQTMAGAMRFTTTELADLESRIANAAAQALTMELEAFERMVKAVVQQAEAIKAGALALA 240 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 +ID++ +LA LA EQ YCRPI+D S F +K GRHP+VE+ L++QS+ PFIAN+CDLS Sbjct: 241 VIDVASSLAYLATEQAYCRPIVDASMTFSIKGGRHPVVEQALRRQSAGPFIANNCDLSAV 300 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 N+ +G +WLLTGPNMGGKSTFLRQNALI I+AQ+GS+VPA AHIG+VD+LFSRVG++D Sbjct: 301 NNGKNGAIWLLTGPNMGGKSTFLRQNALIAILAQIGSFVPAEAAHIGVVDRLFSRVGASD 360 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 +LA GRSTFMVEM+ETA+ILNQAT++S VILDEIGRGTAT DGLSIAWA +E+LHE NRC Sbjct: 361 DLARGRSTFMVEMVETAAILNQATDRSLVILDEIGRGTATFDGLSIAWAAVEHLHEVNRC 420 Query: 765 RGLLATHFHELTDLSKSL 782 RGL ATHFHELT LS+ L Sbjct: 421 RGLFATHFHELTVLSEKL 438 >gi|313574753|emb|CBX26229.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] Length = 439 Score = 563 bits (1451), Expect = e-158, Method: Compositional matrix adjust. Identities = 267/438 (60%), Positives = 339/438 (77%) Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 N RLD+I + I + L + ++ LK D+PR+LSRL + RG P+D+ IR G+ S I Sbjct: 1 NARLDAIAYLIDDVSLSDGLRDALKQVADMPRALSRLALERGGPRDLGAIRQGLASAEKI 60 Query: 405 LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDET 464 + + LP+EL A+ LK LP LE L SML+D+LP KRDGGFLR+GA+ LDE Sbjct: 61 AAILDQGLLPDELAAALADLKALPGGLEAMLGSMLADELPLLKRDGGFLREGANPELDEV 120 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 R+LRDQS+R+IA LQLKYA+ET IK+LKIKHNN LGYFIEVT+ +A V+ E+K RFI Sbjct: 121 RALRDQSRRVIAGLQLKYADETGIKSLKIKHNNVLGYFIEVTAGNADVMTTTDEAKARFI 180 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 HRQTM+ RFTT EL DLE+RI NA AL +ELE+FE + A+++Q+E++ + +A Sbjct: 181 HRQTMAGAMRFTTTELADLESRIANAAAQALTMELEAFERMVKAVVQQAEAIKAGALALA 240 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 +ID++ +LA LA EQ YCRPI+D S F +K GRHP+VE+ L++QS+ PFIAN+CDLS Sbjct: 241 VIDVASSLAYLATEQAYCRPIVDASMTFSIKGGRHPVVEQALRRQSAGPFIANNCDLSAV 300 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 N+ +G +WLLTGPNMGGKSTFLRQNALI I+AQ+GS+VPA AHIG+VD+LFSRVG++D Sbjct: 301 NNGKNGAIWLLTGPNMGGKSTFLRQNALIAILAQIGSFVPAEAAHIGVVDRLFSRVGASD 360 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 +LA GRSTFMVEM+ETA+ILNQAT++S VILDEIGRGTAT DGLSIAWA +E+LHE NRC Sbjct: 361 DLARGRSTFMVEMVETAAILNQATDRSLVILDEIGRGTATFDGLSIAWAAVEHLHEVNRC 420 Query: 765 RGLLATHFHELTDLSKSL 782 RGL ATHFHELT LS+ L Sbjct: 421 RGLFATHFHELTVLSEKL 438 >gi|220917347|ref|YP_002492651.1| DNA mismatch repair protein MutS [Anaeromyxobacter dehalogenans 2CP-1] gi|254766610|sp|B8JA66|MUTS_ANAD2 RecName: Full=DNA mismatch repair protein mutS gi|219955201|gb|ACL65585.1| DNA mismatch repair protein MutS [Anaeromyxobacter dehalogenans 2CP-1] Length = 882 Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust. Identities = 337/905 (37%), Positives = 513/905 (56%), Gaps = 51/905 (5%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 + E ++ TPMMRQY+E K+ PD+++F+R+GDFYE+FF+DAL AS L ITLT R K Sbjct: 1 MPEIAQAHTPMMRQYLETKARYPDAILFFRLGDFYEMFFEDALTASEALQITLTARSK-- 58 Query: 78 GKD-IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTP 136 G D +PMCGVP H A Y+ +L++ G ++AIC+Q+E P G LV+R V R+VTP Sbjct: 59 GDDKVPMCGVPYHAARGYVARLLEKGFKVAICDQVEEP------GKSQLVKREVTRVVTP 112 Query: 137 GTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD-RLISDIMRIDPR 195 G + +DQ+L P ++++L AVA +A +D STG + + D RL+ ++ R R Sbjct: 113 GMVLDDQVLDPREASWLGAVALEDGRAGLALLDASTGQLQCGEVDGDERLVDELRRAGVR 172 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQ 254 E++FS A ++ G A + FD + E R+ + + ++D FG S Sbjct: 173 ELVFSSAA-DGARTDAIARAAGAPAARRDAAEFDRA--EDRLRKHLGVPSLDGFGVSGLP 229 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-S 313 + AAAAA++Y+ TQ + R L +D A R+NLE+ RTLSG R++ + Sbjct: 230 LGLAAAAAALAYLADTQRATPRHVDRISRLSTDDVLLLDEATRTNLELERTLSGGRKKGT 289 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D ++T GGR AE + PLTD +I RLD++ + + L+ D Sbjct: 290 LLALLDRTVTAPGGRRLAEWLRYPLTDLARIGARLDAVEELTGAAVAREELALALRPVAD 349 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R LSRL +G+G +D+ + + + + + L+ LR A +L+ L ++L Sbjct: 350 LERLLSRLVLGQGNARDLRALAGALLALPALAGV-LEARGAARLREAGARLRGL-EALAA 407 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + ++++ P R+GGF+R G A LDE ++ + K IA+++ K E T I +LK+ Sbjct: 408 HLDAAVAEEPPATLREGGFIRRGHSAELDEIVAIAEDGKGWIAAMEAKERERTGIGSLKV 467 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 + N GY++EVT + ++ KD E RQT RF T EL E ++ A Sbjct: 468 RFNKVFGYYLEVTKPNLHLVPKDWE------RRQTTVGGERFVTPELKTFEEKVLTAEER 521 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 +E FE L A+ ++ + A+ +A D ++L+ +A E+ Y RP +D S Sbjct: 522 RAALEERLFEALRQAVAAEAPRVRTAADAVATADALLSLSRVAAERGYVRPEVDASEALE 581 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLS---CPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 + DGRHP+VE L + ++ ND ++ P G L ++TGPNM GKST +RQ Sbjct: 582 IVDGRHPVVEAVLPDGPAA-YVPNDVLVASRGAPECGEHGALLVITGPNMAGKSTVMRQA 640 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 AL+V++AQMG++VPA A IG+VD++F+RVG++D+LA GRSTFMVEM ETA+IL+ AT + Sbjct: 641 ALVVLLAQMGAFVPARRARIGLVDRIFTRVGASDDLARGRSTFMVEMTETAAILHNATRR 700 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V+LDEIGRGT+T DG+SIAWA E+LH+ CR L ATH+HEL DL++ N T+ Sbjct: 701 SLVVLDEIGRGTSTFDGVSIAWAVAEHLHDVTGCRTLFATHYHELQDLARERPAVRNLTV 760 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL-------- 842 V + + ++FL K++ G A SYGI+V KLAGLP V++RA +ILK E + Sbjct: 761 AVREVGDRVVFLRKLVQGGASRSYGIEVAKLAGLPAEVLARAREILKNLEAMEVDEGGHP 820 Query: 843 ---------YHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKT 893 + + L+ + +++K I+ ++LD + PL AL Sbjct: 821 ALARGRRRRAGPSAAQLGLFGGGAPADPAAEDVAK-------AIRAIDLDALRPLDALNL 873 Query: 894 LYAVK 898 L K Sbjct: 874 LAGWK 878 >gi|51892895|ref|YP_075586.1| DNA mismatch repair protein MutS [Symbiobacterium thermophilum IAM 14863] gi|81692094|sp|Q67NK1|MUTS_SYMTH RecName: Full=DNA mismatch repair protein mutS gi|51856584|dbj|BAD40742.1| DNA mismatch repair protein [Symbiobacterium thermophilum IAM 14863] Length = 875 Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust. Identities = 322/892 (36%), Positives = 515/892 (57%), Gaps = 45/892 (5%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIP 82 +TPM QY++IK PD ++FYR+GDFYE F DDA L +R L + LT R GK +G+ +P Sbjct: 6 ATPMFAQYLQIKEQYPDCILFYRLGDFYETFMDDAELVARELELVLTGRDAGKDMGR-VP 64 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M G+P H A YI +LI+ G+++AIC+Q+E P +AK LV+R+V R+VTPGTL E Sbjct: 65 MAGIPYHAAEAYIARLIEKGYKVAICDQLEDPKKAK-----GLVKRDVTRVVTPGTLVEP 119 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR----LISDIMRIDPREII 198 +LL +N+L A+A RT + +A +D+STG F + N L+ +I R++PRE+I Sbjct: 120 RLLPEKANNFLAAIAWSRTGFGLAVVDLSTGEFAAAQMNGADSLRLLLEEIGRLEPREVI 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEK 257 + + G F+H+ + ++ +++ + FG ++ Sbjct: 180 LEPGLAAEPSVTGPLKASGIAVSVFEGRHFNHANAYRKLTEHFGTANLSGFGCEDLELAT 239 Query: 258 TAAAAAISYIKKTQ-----MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSRE 311 +AA AA++Y+++ V+ + YP + +D A R NLE+ R+L G R Sbjct: 240 SAAGAALAYLEEMHKASLGHVSGLAVYYP-----GDYMVLDPATRRNLELTRSLRDGGRR 294 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 +LL +D ++T G RL + PL D +I+ R +++ + P+L ++ +L+ Sbjct: 295 GTLLWVMDRTVTAMGARLLKSWLERPLLDLRQIHARHEAVGELVHRPVLRADLRALLQEV 354 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSL 431 D+ R R+ +G +D+ ++ + + + + L++ E L ++L L + Sbjct: 355 HDLERLAGRVAVGSANARDLVALKQSL-VALPSIRVALEDVRAERLVELRDQLDML-DDV 412 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + ++D+ P +GG L+DG +DE R + K IA ++ + E T IK+L Sbjct: 413 RDLIEHAIADEPPVALTEGGILKDGFHPEVDELRRIARDGKAWIAQVEARERERTGIKSL 472 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 KI +N GY++ VT + ++ D +I +QT++N RF T EL +LE ++ +A Sbjct: 473 KIGYNKVFGYYLAVTKPNLPLVPPD------YIRKQTLANEERFITPELKELEEKVLHAA 526 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + +E E F + + + + +++ +A +D + A +A YCRP++D ST Sbjct: 527 ERVMDLEYELFVEIRQRVAAEVTRIQRSARAVAELDALASFAEVASLYGYCRPLVDGSTV 586 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 +K RHP++E+ +++ + F+ ND + D ++ L+TGPNMGGKST +RQ A Sbjct: 587 LELKGSRHPVLERVMEEGA---FVPNDLLV----DTGENRVLLITGPNMGGKSTVMRQAA 639 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 L VI+AQ GS+VPA AHIG+VD++F+RVG++D+LA+GRSTFMVEM E A+IL+ AT +S Sbjct: 640 LAVILAQAGSFVPAESAHIGLVDRVFTRVGASDDLATGRSTFMVEMTEVANILHSATERS 699 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 V+LDE+GRGTAT DGLSIAWA E++H+ CR L ATH+HEL +L L N ++ Sbjct: 700 LVVLDEVGRGTATFDGLSIAWAITEHIHQAIGCRTLFATHYHELCELEGILPGVKNYSVA 759 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR 851 V + E IIFL K++ G AD SYGIQVG+LAGLP +V+ RA +IL T E+ +K R Sbjct: 760 VMEKGEDIIFLRKLVRGGADRSYGIQVGRLAGLPASVVERAREILATLEE-QEGERKSRR 818 Query: 852 LYYPEIQTKESKNNLS----KNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + ++ L+ K D + VE++ LN+ ++P+ AL TLY ++A Sbjct: 819 EAAAQRLRRQPAVQLTFFEPKKDPV-VEELLGLNVMALTPIEALNTLYQLQA 869 >gi|313574725|emb|CBX26215.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] gi|313574727|emb|CBX26216.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] Length = 439 Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust. Identities = 266/438 (60%), Positives = 340/438 (77%) Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 N RLD++ + I + L + ++ LK D+PR+LSRL + RG P+D+ IR G+ S I Sbjct: 1 NPRLDAVAYLIDDVSLCDGLRDALKHVADMPRALSRLALERGGPRDLGAIRQGLVSAEKI 60 Query: 405 LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDET 464 + + LPEEL A++ LK LP +LE L+SML+DDLP KRDGGFLR+GA+ LDE Sbjct: 61 GVILDQGLLPEELAAALKALKALPSALEAMLASMLADDLPLLKRDGGFLREGANPDLDEV 120 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 R+LRDQS+R+IA LQL+YA+ET IK+LKIKHNN LGYFIEVT+ +A V+ E+K RFI Sbjct: 121 RALRDQSRRVIAGLQLQYADETGIKSLKIKHNNVLGYFIEVTAGNADVMMATDEAKARFI 180 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 HRQTM+ RFTT EL DLE+RI NA AL +ELE+FE + A+++Q+E++ + +A Sbjct: 181 HRQTMAGAMRFTTTELADLESRIANAAAEALTMELEAFERMVAAVVQQAEAIKAGAVALA 240 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 +ID++ +LA LA EQ YCRPI+D S F +K GRHP+VE+ L++QS+ PFIAN+CDLS Sbjct: 241 VIDVASSLAYLATEQAYCRPIVDASMTFAIKGGRHPVVEQALRRQSAGPFIANNCDLSAA 300 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 +G +WLLTGPNMGGKSTFLRQNALI I+AQ+GS+VPA AHIG+VD+LFSRVG++D Sbjct: 301 EGGKNGAIWLLTGPNMGGKSTFLRQNALIAILAQIGSFVPAEAAHIGVVDRLFSRVGASD 360 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 +LA GRSTFMVEM+ETA+ILNQAT++S VILDEIGRGTAT DGLSIAWA +E+LHE NRC Sbjct: 361 DLARGRSTFMVEMVETAAILNQATDRSLVILDEIGRGTATFDGLSIAWAAVEHLHEVNRC 420 Query: 765 RGLLATHFHELTDLSKSL 782 RGL ATHFHELT LS+ L Sbjct: 421 RGLFATHFHELTVLSEKL 438 >gi|158320586|ref|YP_001513093.1| DNA mismatch repair protein MutS [Alkaliphilus oremlandii OhILAs] gi|158140785|gb|ABW19097.1| DNA mismatch repair protein MutS [Alkaliphilus oremlandii OhILAs] Length = 874 Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust. Identities = 334/897 (37%), Positives = 535/897 (59%), Gaps = 55/897 (6%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY+EIK+ D+L+F+R+GDFYELFFDDA ASR L ITLT R L PMCGVP Sbjct: 1 MMQQYMEIKNQYKDALMFFRLGDFYELFFDDAETASRELEITLTARDCGLESKAPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H AN YI KL+ G+++AICEQ+E P AK +V+R+VVR++TPGTL + LL Sbjct: 61 YHAANGYIDKLVSKGYKVAICEQVEDPSVAK-----GIVKRDVVRVITPGTLIDTNLLED 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFK----ISTSNHDRLISDIMRIDPREIIF---S 200 +NYL+++ +++DISTG + TS LI +I +I+P E+I+ Sbjct: 116 KKNNYLVSLYMSSLGCGFSYVDISTGELLSTEIVGTSIEQNLIDEISKIEPNELIYFVEE 175 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFG-SFSQVEKT 258 E ++ + + + L N+ +++ + + F+ S + ++I + +NI TV++ G S + + Sbjct: 176 EDKIGTNFIEGIRKKL-NIHISKYDPWTFEESYAMNQIKNQFNILTVESLGFSLNHLGIN 234 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQS---TLFIDSAARSNLEILRTLSG-SREQSL 314 A A I Y+K TQ K T+ + + +I + + +D + R NLE+ T+ G +++ SL Sbjct: 235 ATGALIHYLKSTQ---KRTLSHINKINIYTFTEKMVLDISTRRNLELTETIRGKNKKGSL 291 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D + T GGR+ + I PL + IN RL+++ + +L +++ LK D+ Sbjct: 292 LWILDKTQTAMGGRMIRKWIEEPLLNIQNINRRLEAVATLKNDILLRCELKESLKQIYDL 351 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKND--LPEELRGAVEKLKKLPQSLE 432 R ++ G P+D+ ++ + +I LF + L +EL ++ L+ + +E Sbjct: 352 ERLSGKIAFGSATPRDLVALKKSVAFLPDIKKLFENENSGLLKELLNNIDTLEDIQALIE 411 Query: 433 KTLSSMLSDDLPTFK-RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 SS+L D P+ +DGG +++G + LDE + K IA L+ + T IK+L Sbjct: 412 ---SSIL--DEPSISLKDGGIIKEGYNDELDELYVAAREGKHWIAKLEQAEKDRTGIKSL 466 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 K+ +N GY+IE+T S+ + + + +I +QT++N R+ T EL +LE++I A Sbjct: 467 KVGYNKIFGYYIEITKSNLHL------APENYIRKQTLANCERYITPELKELEDKILGAE 520 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 ++ IE E F + N ++ + E + ++ +A +D+ + A A E NY +P +++S Sbjct: 521 EKSIAIEYEQFIEIRNMLLHEIERIQRTARAVAELDVLYSFAEAASENNYVKPTVNSSET 580 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 +K+GRHP+VEK L+ + FI+ND ++ +++ L ++TGPNM GKST++RQ A Sbjct: 581 IDIKEGRHPVVEKVLE---NNMFISNDTYINTEDEQ----LLMITGPNMAGKSTYMRQVA 633 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LI++MAQ+GS+VPA+ A IGI D++F+RVG+ D+L+ G+STFMVEM E A+I+N AT +S Sbjct: 634 LIILMAQIGSFVPATSATIGITDRIFTRVGANDDLSQGQSTFMVEMSEMATIVNLATKKS 693 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 +I+DEIGRGT+T DGLSIAW+T EY+ ++ R L +TH+HELT LS++ + N + Sbjct: 694 LLIVDEIGRGTSTFDGLSIAWSTAEYICQSLGSRTLFSTHYHELTKLSETYRGIKNYKVL 753 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR 851 V + E +IFLHKV+ G AD SYGIQV KLAGLP +I+RA IL E+ QK+ Sbjct: 754 VKEDKEDVIFLHKVVKGNADRSYGIQVAKLAGLPAAIITRASHILSDLER--ESIQKEQY 811 Query: 852 LYYPEIQTKESKNNLSKNDKLF----------VEKIKCLNLDEMSPLTALKTLYAVK 898 + + + + N+K V+ +K +NL E +P+ AL LY ++ Sbjct: 812 IIESTAENTLTASTDVANEKQLKLDDFIESEIVKDLKKINLLETTPMDALNILYQLQ 868 >gi|313574657|emb|CBX26181.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] gi|313574659|emb|CBX26182.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] gi|313574663|emb|CBX26184.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] gi|313574671|emb|CBX26188.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] Length = 439 Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust. Identities = 265/438 (60%), Positives = 336/438 (76%) Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 N RLD++ + I + L + ++ LK D+PR+LSRL + RG P+D+ IR G+ S I Sbjct: 1 NARLDAVAYLIDDVSLCDGLRDALKQVADMPRALSRLALERGGPRDLGAIRQGLASAERI 60 Query: 405 LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDET 464 + + LP+EL A+ LK LP LE L SML+DDLP KRDGGFLR+GA+ LD+ Sbjct: 61 AAILDQGLLPQELAAALADLKALPGELEAMLGSMLADDLPLLKRDGGFLREGANPELDDV 120 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 R+LRDQS+R+IA LQL+YAEET IK+LKIKHNN LGYFIEVT+ +A V+ E+K RFI Sbjct: 121 RALRDQSRRVIAGLQLQYAEETGIKSLKIKHNNVLGYFIEVTAGNADVMMATDEAKARFI 180 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 HRQTM+ RFTT EL DLE+RI NA AL +ELE+FE + A+++Q+E++ + +A Sbjct: 181 HRQTMAGAMRFTTTELADLESRIANAAAEALTMELEAFERMVEAVVQQAEAIKAGALALA 240 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 +ID++ +LA LA EQ YCRPI+D S F + GRHP+VE+ L++QS+ PFIAN+CDLS Sbjct: 241 VIDVASSLAYLATEQAYCRPIVDASMTFAITGGRHPVVEQALRRQSAGPFIANNCDLSAA 300 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 +G +WLLTGPNMGGKSTFLRQNALI I+AQ+GS+VPA AHIGIVD+LFSRVG++D Sbjct: 301 EGGKNGAIWLLTGPNMGGKSTFLRQNALIAILAQIGSFVPAEAAHIGIVDRLFSRVGASD 360 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 +LA GRSTFMVEM+ETA+ILNQAT++S VILDEIGRGTAT DGLSIAWA +E+LHE NRC Sbjct: 361 DLARGRSTFMVEMVETAAILNQATDRSLVILDEIGRGTATFDGLSIAWAAVEHLHEVNRC 420 Query: 765 RGLLATHFHELTDLSKSL 782 RGL ATHFHELT LS+ L Sbjct: 421 RGLFATHFHELTVLSEKL 438 >gi|323703567|ref|ZP_08115212.1| DNA mismatch repair protein MutS [Desulfotomaculum nigrificans DSM 574] gi|323531470|gb|EGB21364.1| DNA mismatch repair protein MutS [Desulfotomaculum nigrificans DSM 574] Length = 873 Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust. Identities = 326/889 (36%), Positives = 514/889 (57%), Gaps = 42/889 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY+EIK PD+++F+R+GDFYE+FF+DA LASR L ITLT R + +PMCG Sbjct: 4 TPMMRQYLEIKEQYPDAILFFRLGDFYEMFFEDAKLASRELEITLTGRDAGEPERVPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A++YI KLI G++IAICEQ+E P AK LV+R V+R++TPGT+ + +L Sbjct: 64 VPFHAADNYIAKLIDKGYKIAICEQVEDPKSAK-----GLVKREVIRVITPGTVIDGNML 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH----DRLISDIMRIDPREIIFSE 201 S D+NYL+AV RI + +A D+STG+F+++ ++L+ +++R+ PRE++ Sbjct: 119 SDKDNNYLVAVCRIGQSYGLAVSDLSTGLFQVTQMTGQWALNQLLDELIRLAPREVVLPH 178 Query: 202 KELSHAEYKSLFETL-GNVAVAQPNVFFDHSISESRIADYYN---ITTVDTFGSFSQVEK 257 K F+ L G + + F ++ I +++ T +D + S + Sbjct: 179 SLWQDEGVKKSFQELEGTTITSLADQIFTQEQAQQAITEHFGQAKTTALDCWQSPAVC-- 236 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLK 316 AA + Y+ +TQ I QS + +D AR NLEI ++L G ++ SLL Sbjct: 237 GAAGGLLHYLLETQKRKLQHITEITSYFTQSYMILDGIARRNLEICKSLRDGGKKGSLLS 296 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D + + GGRL + PL D IN RLD++ + + +L + + LK+ D+ R Sbjct: 297 VLDLTRSAMGGRLLKAWLEQPLIDIKAINERLDAVQELVDSVLLRDELATALKNVYDMER 356 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 +R G +D+ + ++ + L L N + L+ ++ L + L+ L Sbjct: 357 LTARAAYGSANARDMLALLASLQM-LPPLRQALTNCQSKLLKRIYDQFDTL-EDLKGLLE 414 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 S +++D P RDGG ++ G +D+ R++ K +A L+ + E+T IK+LK+ N Sbjct: 415 SSIAEDAPITLRDGGLIKAGYSQEVDQLRAVARDGKSWLAGLESREKEKTGIKSLKVGFN 474 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY++EVT ++ +++ + + RQT++N RF T EL + E+ I A + + Sbjct: 475 KVFGYYLEVTKANLNLVP------EYYQRRQTLANAERFITPELKEYESMILGAEDRLVE 528 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E F + N + + + + + ++A +D+ +ALA +A Q Y RP ++NS + + Sbjct: 529 LEYNLFVDVRNQVAAEVSRIQHTALLVAQVDVLVALAEVAARQGYVRPEVNNSGVIEITE 588 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE L F+ ND + D + +L L+TGPNMGGKST+ RQ ALIV+M Sbjct: 589 GRHPVVEINL---GPGCFVPNDTYI----DTDRHRLALITGPNMGGKSTYQRQVALIVLM 641 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+GS+VPAS A IGIVD++F+RVG++D+L SG+STFMVEM+ET I++ AT+QS VI+D Sbjct: 642 AQVGSFVPASKASIGIVDRIFARVGASDDLTSGQSTFMVEMLETKQIMDHATSQSLVIID 701 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 E+GRGT+ L+G++IA A IE+LH+ CR L +TH+HEL +L L N V + Sbjct: 702 ELGRGTSNLEGMAIAQAVIEFLHDVVGCRTLFSTHYHELAELEGRLAGLKNYATAVKEQG 761 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR-LYYP 855 + + FL KVI A SYGI +LAGLP +I RA +++ E NQ+ + + Sbjct: 762 DEVTFLRKVIRDQASKSYGIHCARLAGLPGQIIQRANQLVQQLE----FNQRAAQEVVAG 817 Query: 856 EIQTKESKNNLS----KNDKL--FVEKIKCLNLDEMSPLTALKTLYAVK 898 + Q S L+ KN++ F ++I L++ M+PL +L LY ++ Sbjct: 818 KTQVAASVEQLALFPEKNEEHDEFKKEIVALDIANMTPLESLNYLYQLQ 866 >gi|302389749|ref|YP_003825570.1| DNA mismatch repair protein MutS [Thermosediminibacter oceani DSM 16646] gi|302200377|gb|ADL07947.1| DNA mismatch repair protein MutS [Thermosediminibacter oceani DSM 16646] Length = 863 Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust. Identities = 342/894 (38%), Positives = 523/894 (58%), Gaps = 58/894 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY EIK D +VF+R+GDFYE+FFDDA +A+R L I LT R +PM G Sbjct: 3 TPMLKQYREIKEKYKDYIVFFRLGDFYEMFFDDAHIAARELEIALTSRDPE--NRVPMAG 60 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A+ YI KLI G+++ ICEQ+E P +AK +V+R VV+++TPGT+TE L Sbjct: 61 VPYHAADQYIYKLISKGYKVVICEQVEDPKQAK-----GIVKREVVKIITPGTITEISAL 115 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-----DRLISDIMRIDPREIIFS 200 +NYL+ + R ++ IA D+ TG F ++T H L+ ++ +++PRE + + Sbjct: 116 EEKKNNYLVCIYRENNDFGIAATDLMTGEF-LTTEIHCAYPYQELLDELSKLEPRECLVN 174 Query: 201 EKELSHAEYKSLFETLGNVAVA-QPNVFFD-HSISESRIADYYNITTVDTFGS-FSQVEK 257 L T N+ + + N +F S E ++ + D F F+ + Sbjct: 175 AGFLQDTFLNKAVNTNFNILLTFKENDYFQAESARELLMSQFSGNELEDIFKRPFATI-- 232 Query: 258 TAAAAAISYIKKTQMVNKP---TIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQS 313 A+ A ++Y+++TQ ++ +I Y ER + + +D R NLE+ ++L G ++ S Sbjct: 233 -ASGACLNYLRETQRLSLSHINSIRYYERTEYMA---LDVTCRRNLELTQSLMDGKKQGS 288 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D ++T GGR + I PL D KI R D++ QN L +++ LK+ D Sbjct: 289 LLWVLDKTVTSMGGRTLRKWIEQPLIDIIKIKERQDAVEELYQNYFLRQELREQLKNLYD 348 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSL 431 + R +L G +D+ I++ ++ I L ++ L L ++ L + + L Sbjct: 349 LERLTGKLVCGNLNARDLLAIKNTVKHFPKIKELLAGCRSKLLITLYNELDLLNDVYELL 408 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 EK ++ DD P ++GG ++DG D+ +D R + K IA L+ K E T IK+L Sbjct: 409 EKAIN----DDPPISVKEGGIIKDGFDSEVDRLRKASTEGKSWIAELERKERERTGIKSL 464 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 K+ +N GY+IE+T ++ S++ KD +I +QT++N RF T EL + E+ I A Sbjct: 465 KVGYNKVFGYYIEITKANLSLVPKD------YIRKQTLANGERFITEELKEYESLIMGAE 518 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 L +E + F + +I + L ++QV++++D ++LA +A NY +P + + Sbjct: 519 EKLLDLEYQIFCKIREDLITKITRLKKSAQVVSVLDALVSLAEVASSNNYVKPELTLNDE 578 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 + +GRHP+VE TLK + FI ND ++C + S ++TGPNM GKST++RQ A Sbjct: 579 INIVEGRHPVVELTLKDEM---FIPNDTHINCSDSMIS----IITGPNMAGKSTYMRQVA 631 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LIV+MAQ+GS+VPA A IGIVD++F+R+G++DNLASG+STFMVEM E A+IL AT +S Sbjct: 632 LIVLMAQIGSFVPAKSAQIGIVDRIFTRIGASDNLASGQSTFMVEMTEVANILKHATPKS 691 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 +ILDEIGRGT+T DGLSIAWA IEY+H+ + + L ATH+HE+T L K LK N + Sbjct: 692 LLILDEIGRGTSTYDGLSIAWAVIEYIHKNIKAKTLFATHYHEITQL-KKLKGVKNFKVM 750 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR 851 V + E IIFL K++PG AD SYGI+V KLAGLP +VI RA +ILK E+ R Sbjct: 751 VKERGEDIIFLRKIVPGEADRSYGIEVAKLAGLPKSVILRAQEILKDLEQ-----NDGAR 805 Query: 852 LYYPEI-QTKESK------NNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P+I TK++ N S ++ + IK L+++ ++PL AL LY++K Sbjct: 806 AREPQIAATKDTPFDDVQLNIESLKNEQVIRMIKELDINTITPLEALNLLYSIK 859 >gi|66819423|ref|XP_643371.1| hypothetical protein DDB_G0275999 [Dictyostelium discoideum AX4] gi|60471499|gb|EAL69456.1| hypothetical protein DDB_G0275999 [Dictyostelium discoideum AX4] Length = 898 Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust. Identities = 335/900 (37%), Positives = 514/900 (57%), Gaps = 105/900 (11%) Query: 29 MRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLT--KRGKHLGKDIPMCGV 86 M QY K P+ ++F+R+GDFYE+F +DA +AS LGITLT K+GK+ ++IPMCGV Sbjct: 1 MEQYSGFKKKYPNEILFFRLGDFYEMFDEDAKIASNLLGITLTSRKQGKNRNREIPMCGV 60 Query: 87 PVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLS 146 P H+A +I KL+K+G +AIC+Q+E EAK+ + ++ R +VR++TPGTL ED+ L+ Sbjct: 61 PSHSAEIHIAKLVKLGKSVAICDQVEDSNEAKE--GRRIINRQIVRIITPGTLYEDRYLT 118 Query: 147 PTDSNYLMAVA-----------------------------------------RIRTEWAI 165 ++SNYL ++ ++++I Sbjct: 119 -SNSNYLCSILPNGFELNDYLMVADDSSNNNNSNSNSNNNNNISNNISNTKFSASSQFSI 177 Query: 166 AWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPN 225 +W+DISTG F IS+S + L S++ RI P+EI+ L++ + S NV++ Sbjct: 178 SWLDISTGDFFISSSTLENLSSELNRIQPKEILIP-ASLNYNQQISKILKPYNVSMENDL 236 Query: 226 VFFDHSISESRIADYYNITTVDTFGS-------FSQVEKTAAAAAISYIKKTQMV----- 273 F++ +I + + + FS E +A + +SYI KT + Sbjct: 237 KSFNYKKKTFKIFNEAFNNNNNNEINNEYFENEFSNDELNSAGSILSYIIKTNIGIGNNN 296 Query: 274 ---NKP--TIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGR 328 + P ++ P+R D +++FID + +LEI +T G ++ SLL++ID +IT GGR Sbjct: 297 DNSSNPLFSLNLPKRIDSHNSMFIDYSTMQSLEITKTYQGDKKGSLLESIDKTITPQGGR 356 Query: 329 LFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEP 388 L RI SP + +IN+RL+ + FF N L N ++ L + D+ R + RLKI + P Sbjct: 357 LLFSRIQSPSLELKEINSRLNQLEFFYNNMELTNEVRSFLNAGSDIERCIQRLKINKSGP 416 Query: 389 KDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT--------LSSMLS 440 +D+ I ++S ++ L ++ E + +L +++T LS+ L Sbjct: 417 RDLHTIGSTLQSIFHLKESLQSKLLTMKINEQTESINQLLLKIQQTHLTPLLNHLSAALI 476 Query: 441 DDLPTFK-RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 D P+ DGGF+++G LD + + S +I + Y + KI LK+ N+ + Sbjct: 477 DSPPSISVNDGGFIKEGYSKELDRYKLISRNSDALINEFRETYRNKLKIPKLKVNKNSII 536 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IE++SS + + FIH QT+ ++ RF + +LI LE+ I A + L E+ Sbjct: 537 GYYIEISSSDRDKIPLN------FIHIQTLLSVMRFKSSDLIILEDEINRAASKVLEYEI 590 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI------ 613 + + +L + + + S + S VIA +DIS +LA ++K++ Y +PI+ N+ N Sbjct: 591 QLYYVLVDLVCKYSNEIKQVSSVIANLDISTSLAKISKQRRYIKPILVNNNNNNNNNIVV 650 Query: 614 -------------VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 +KDGRHP VE S+ FI ND L+ D LWL+TGPNM Sbjct: 651 DNDNNDNDRLILDIKDGRHPTVE-----NSTTEFIGNDLQLNKGID--DANLWLITGPNM 703 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GGKSTFLRQNALI++MAQMGS+VPASYA IGIVD +FSRVGS+D+L++ +STFMVEM+ET Sbjct: 704 GGKSTFLRQNALIILMAQMGSFVPASYAKIGIVDAIFSRVGSSDDLSNDKSTFMVEMVET 763 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 ASIL +ATN+SFVI+DE+GRGT+TLDG+SIA + +EYL++ NRCR L ATH+HELT Sbjct: 764 ASILKKATNRSFVIMDEVGRGTSTLDGISIAQSVVEYLNQVNRCRTLFATHYHELTKNLD 823 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 L + + + I+F HK++PG+++ SYGI K+AG+PN+V+ R+ IL E Sbjct: 824 ETPHIKCYCLAIQEDEDEILFTHKIVPGMSNKSYGIFCAKMAGIPNSVLERSKSILFELE 883 >gi|116623848|ref|YP_826004.1| DNA mismatch repair protein MutS [Candidatus Solibacter usitatus Ellin6076] gi|122253305|sp|Q01X96|MUTS_SOLUE RecName: Full=DNA mismatch repair protein mutS gi|116227010|gb|ABJ85719.1| DNA mismatch repair protein MutS [Candidatus Solibacter usitatus Ellin6076] Length = 869 Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust. Identities = 331/886 (37%), Positives = 511/886 (57%), Gaps = 45/886 (5%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 +STP+MRQY IK P++L+ +R+GDFYELFF+DA+ A+R L ITLT R K G IPM Sbjct: 4 ASTPLMRQYNSIKEQVPNALLMFRLGDFYELFFEDAVTAARELEITLTARNKEKGNAIPM 63 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVP H A YI +LI+ G R+AIC+Q+E AKK LVRR + R+VTPGT + Sbjct: 64 CGVPYHAAEGYISRLIQKGFRVAICDQVEDAKLAKK-----LVRREITRVVTPGTAMDSN 118 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF-SEK 202 L+ ++N+L AV R + A+A +D+STG F+++ + + + + RE++F + Sbjct: 119 LVRSRENNFLAAVGRSGSRSAVAHVDVSTGEFRVTEMEPEEVAGALEHLGAREVLFPGDL 178 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 L E +S L V + F H S+ + D++ + ++D G ++ AA Sbjct: 179 PLLTGEDRS---GLRFVRTELEDWVFTHDYSDRTLRDHFKLLSLDGCGLANRAAAIGAAG 235 Query: 263 A-ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS------REQSLL 315 A + Y++ TQ + P D ++ +DS NLE++ L + + ++L Sbjct: 236 AILHYLRDTQRAALDHLDRPTYYDRADSMVLDSVTVRNLELIEPLFAADAGGIHAQPTVL 295 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D ++TG GGRL +R+ P + +I RLD++ Q IL ++K L D+ Sbjct: 296 GVLDQTLTGMGGRLLRQRLLRPSMNRAEIEQRLDAVGELQQQTILRAELRKQLSGILDLE 355 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R L+++ +G P+D+ + + I L LR ++L +L L Sbjct: 356 RLLAKVTLGSAGPRDVLALGRSLEK-IPALKRCFDTQQAARLRNLHDRLDELADVASLIL 414 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 +SD+ P DGG +R G LDE R L K+ IA ++ + + T I +LK++ Sbjct: 415 DC-ISDEPPLNLVDGGTIRAGFHPELDELRDLSQNGKQYIAQIEARERQRTGIGSLKVRF 473 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 NN GY+IE+T ++ + D E K QT++N RFTT EL D E ++ +A + L Sbjct: 474 NNVFGYYIEITRANQHLAPADYERK------QTLANAERFTTPELKDYERKVLDAEDKIL 527 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E E F + ++ + A+ +A +D++ +LA +A E Y RP +S + Sbjct: 528 TLEKELFSDVRKRAAAHAQRIRAAAAAVAELDVTASLAQVAAENRYQRPCFSDSGEMRIM 587 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP++E+ +Q++ + FI ND L+ D L ++TGPNMGGKST+LRQ ALI I Sbjct: 588 AGRHPVIERLTEQEAGR-FIPNDLYLNDSTDL----LAIITGPNMGGKSTYLRQAALIAI 642 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +AQ+GS+VPA A + ++D++F+R+G++DNLA GRSTFMVEM ETA ILN AT +SF++L Sbjct: 643 LAQIGSFVPAESASLPVIDRIFTRIGASDNLARGRSTFMVEMTETAVILNTATPRSFIVL 702 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGTAT DGL++AWA +EY+H+ R + L ATH+HELT+L++ L N + V ++ Sbjct: 703 DEVGRGTATYDGLALAWAVVEYIHQRTRAKTLFATHYHELTELAEQLSGVRNLMVSVKEA 762 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 + IIFL KV PG AD SYGI+V +LAGLP +VI RA D+LK E+ H ++ Sbjct: 763 GDHIIFLRKVEPGKADRSYGIEVARLAGLPISVIERARDVLKLHERTEHAVSGEL----- 817 Query: 856 EIQTKESKNNLSKNDKLF-------VEKIKCLNLDEMSPLTALKTL 894 +S+++ ++F E+I+ +N+DE+ P+ AL+ L Sbjct: 818 ----VKSEDHGPVQIQMFEPVGYGIAERIRAINVDELRPIEALQLL 859 >gi|313574665|emb|CBX26185.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] gi|313574667|emb|CBX26186.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] gi|313574683|emb|CBX26194.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] Length = 439 Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust. Identities = 265/438 (60%), Positives = 335/438 (76%) Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 N RLD++ + I + L + ++ LK D+PR+LSRL + RG P+D+ IR G+ S I Sbjct: 1 NARLDAVAYLIDDVSLCDGLRDALKQVADMPRALSRLALERGGPRDLGAIRQGLASAERI 60 Query: 405 LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDET 464 + + LP+EL A+ LK LP LE L SML+DDLP KRDGGFLR+GA+ LD+ Sbjct: 61 AAILDQGLLPQELAAALADLKALPGGLEAMLGSMLADDLPLLKRDGGFLREGANPELDDV 120 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 R+LRDQS+R+IA LQL+YAEET IK+LKIKHNN LGYFIEVT+ +A V+ E+K RFI Sbjct: 121 RALRDQSRRVIAGLQLQYAEETGIKSLKIKHNNVLGYFIEVTAGNADVMMATDEAKARFI 180 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 HRQTM+ RFTT EL DLE+RI NA AL +ELE+FE + A++ Q+E++ + +A Sbjct: 181 HRQTMAGAMRFTTTELADLESRIANAAAEALTMELEAFERMVEAVVRQAEAIKAGALALA 240 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 +ID++ +LA LA EQ YCRPI+D S F + GRHP+VE+ L++QS+ PFIAN+CDLS Sbjct: 241 VIDVASSLAYLATEQAYCRPIVDASMTFAITGGRHPVVEQALRRQSAGPFIANNCDLSAA 300 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 +G +WLLTGPNMGGKSTFLRQNALI I+AQ+GS+VPA AHIGIVD+LFSRVG++D Sbjct: 301 EGGKNGAIWLLTGPNMGGKSTFLRQNALIAILAQIGSFVPAEAAHIGIVDRLFSRVGASD 360 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 +LA GRSTFMVEM+ETA+ILNQAT++S VILDEIGRGTAT DGLSIAWA +E+LHE NRC Sbjct: 361 DLARGRSTFMVEMVETAAILNQATDRSLVILDEIGRGTATFDGLSIAWAAVEHLHEVNRC 420 Query: 765 RGLLATHFHELTDLSKSL 782 RGL ATHFHELT LS+ L Sbjct: 421 RGLFATHFHELTVLSEKL 438 >gi|310778160|ref|YP_003966493.1| DNA mismatch repair protein MutS [Ilyobacter polytropus DSM 2926] gi|309747483|gb|ADO82145.1| DNA mismatch repair protein MutS [Ilyobacter polytropus DSM 2926] Length = 869 Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust. Identities = 306/829 (36%), Positives = 506/829 (61%), Gaps = 42/829 (5%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TP+M+QY EIK N DS++F+R+GDFYE+FFDDA++AS+ LGITLT R K G+++ Sbjct: 1 MSNETPLMKQYREIKEENRDSILFFRLGDFYEMFFDDAVIASKELGITLTSRNKEKGQNV 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 P+ G+P H++ Y+ KL++ G+++A+CEQ+E P AK +V+R VV+++TPGT+ + Sbjct: 61 PLAGIPYHSSASYMAKLVRKGYKVAVCEQVEDPKTAK-----GIVKREVVKVITPGTVID 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLIS----DIMRIDPREI 197 L +NYL+ V IA++DI+TG FK + D +IS ++ +I P EI Sbjct: 116 TDYLDDKSNNYLLCVYIKGDRAGIAYVDITTGEFKTTELEGDDIISKALNEVHKISPNEI 175 Query: 198 IFSEKELSHAEYKSLFETLGNVA-VAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 I EK S+ Y F+ ++ + V F + SE + DY+ + ++D++G + E Sbjct: 176 IVEEK--SYENYADKFKNYAAISELTMQKVSFVKN-SEEILKDYFRVISLDSYGLQGKKE 232 Query: 257 KTAAAA-AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS-- 313 AA A A+ YI + Q N+ I E+ + + ++ + NLE++ RE+S Sbjct: 233 AVAAGAMALEYILELQKCNELPINKISYENSEEHMELNLTTQKNLELIHN---QREKSNL 289 Query: 314 --LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 LL +D T G R+ I +PL +I R + I +FI ++ I++ILK+ Sbjct: 290 GTLLWVLDSCKTSMGTRMLKSYIKNPLLKVEEIEKRQEDIGYFIDEVLIREEIREILKNI 349 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSL 431 D+ R + ++ +G +D+ ++ IR + IL + L +EKL ++ + Sbjct: 350 YDIERLIGKVIMGTENGRDLIALKKSIRGALEILKILGNRQL---FDSDLEKLIEVYNLI 406 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 EK+++ ++ P R+GG ++ G ++ LD+ + K I ++ + E+T IKNL Sbjct: 407 EKSIN----EEPPFSVREGGMIKGGYNSELDDLHDISKSGKNYILDIETREREKTGIKNL 462 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 K+K+N GYFIEVT ++++++ ++ +I +QT++N R+ T EL D E+++ NA Sbjct: 463 KVKYNKVFGYFIEVTRANSALVPEE------YIRKQTLTNAERYITPELKDYESKVLNAK 516 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 +E + F+ +S+ I E++ +Q +A +D+ +L+ +A + NY +P + + Sbjct: 517 EKIEALEYQIFKDISSEIKEENRVFQELAQNLAYLDVVTSLSDVAIKNNYVKPEVFEGFS 576 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 +K GRHPIVEK + F+ ND L +DK+ + +LTGPNM GKST+++Q A Sbjct: 577 MEIKGGRHPIVEKLV---GPGEFVKNDILLD--DDKS---IIILTGPNMAGKSTYMKQLA 628 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LI++MAQ+GSYVPA +A IGIVDK+F+RVG++D+L SG+STFMVEM E A+I+N AT +S Sbjct: 629 LIILMAQIGSYVPAEFAKIGIVDKIFTRVGASDDLVSGQSTFMVEMSEVANIVNNATEKS 688 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 FVILDE+GRGT+T DG+SIA + EY+H+ + + ATH+HELT+L L++ N ++ Sbjct: 689 FVILDEVGRGTSTFDGISIASSITEYIHDKIGSKTVFATHYHELTELEGKLEKAENYRIE 748 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 V ++ ++FL +++ G AD SYGI+V +LAGLP +++++ LK+ E Sbjct: 749 VKETENDVVFLREIVKGGADKSYGIEVARLAGLPREILNKSKATLKSLE 797 >gi|313574723|emb|CBX26214.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] Length = 439 Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust. Identities = 264/438 (60%), Positives = 336/438 (76%) Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 N RLD++ + I + L + ++ LK D+PR+LSRL + RG P+D+ IR G+ S I Sbjct: 1 NARLDAVAYLIDDVSLCDGLRDALKHVADMPRALSRLALERGGPRDLGAIRQGLVSAEKI 60 Query: 405 LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDET 464 + LP+EL A++ LK LP +LE L SML+DDLP KRDGGFLR+GA+ LDE Sbjct: 61 AAILDDGLLPDELAMALKDLKALPGALEAMLGSMLADDLPLLKRDGGFLREGANPELDEV 120 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 R+LRDQS+R+IA LQLKYA+ET IK+LKIKHNN LGYFIEVT+ +A V+ E+K RFI Sbjct: 121 RALRDQSRRVIAGLQLKYADETGIKSLKIKHNNVLGYFIEVTAGNADVMMATDEAKARFI 180 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 HRQTM+ RFTT EL DLE+RI NA AL +ELE+F + A+++Q+E++ + +A Sbjct: 181 HRQTMAGAMRFTTTELADLESRIANAAAHALTMELEAFARMVEAVVQQAEAIKAGAAALA 240 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 ID++ +LA LA EQ YCRPI+D S F ++ GRHP+VE+ L++QS+ PFIAN+CDLS Sbjct: 241 TIDVASSLAYLATEQAYCRPIVDASMTFAIRGGRHPVVEQALRRQSAGPFIANNCDLSAT 300 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 +G +WLLTGPNMGGKSTFLRQNALI I+AQ+GS+VPA AHIG+VD+LFSRVG++D Sbjct: 301 EGGKNGAIWLLTGPNMGGKSTFLRQNALIAILAQIGSFVPAEAAHIGVVDRLFSRVGASD 360 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 +LA GRSTFMVEM+ETA+ILNQAT++S VILDEIGRGTAT DGLSIAWA +E+LHE NRC Sbjct: 361 DLARGRSTFMVEMVETAAILNQATDRSLVILDEIGRGTATFDGLSIAWAAVEHLHEANRC 420 Query: 765 RGLLATHFHELTDLSKSL 782 RGL ATHFHELT LS+ L Sbjct: 421 RGLFATHFHELTVLSEKL 438 >gi|262196608|ref|YP_003267817.1| DNA mismatch repair protein MutS [Haliangium ochraceum DSM 14365] gi|262079955|gb|ACY15924.1| DNA mismatch repair protein MutS [Haliangium ochraceum DSM 14365] Length = 880 Score = 559 bits (1440), Expect = e-157, Method: Compositional matrix adjust. Identities = 313/888 (35%), Positives = 502/888 (56%), Gaps = 44/888 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY+EIK +PD+++F+R+GDFYE+F++DA +A++ L +TLT R K +PM G Sbjct: 9 TPMMRQYMEIKDQHPDAVLFFRLGDFYEMFYEDAEVAAKALDLTLTCRHKDSANPVPMAG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A YI +L + G+++ +CEQ+E P + K +V+R V +++TPG + ++++L Sbjct: 69 VPHHAARGYIARLTEQGYKVVVCEQVEDP-----KLVKGIVKRAVAQVITPGVVLDEEVL 123 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204 P YL A+A + ++++D+STG F+ + + D L+ ++ R+ PREI+ + L Sbjct: 124 DPKQPRYLAAIACEGGRYGLSFLDVSTGEFRATELDSEDGLLDELARVRPREILAGARNL 183 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT----AA 260 AE L T + + H+ +++ ++ D+ S E+ AA Sbjct: 184 --AEGGPLTATQRDFNQVTYSPVEPHTWGQAKTL-LVSLLAGDS-ASLGLEERILASRAA 239 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 A I Y + TQ + + + T+ +D AA +NLE+ TL G R +LL ID Sbjct: 240 ADVIGYARSTQPTGVLPVSRLQLYEPGDTMMLDEAAIANLELTETLIGGRRAGTLLSVID 299 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T GGRL + PL++ I R D++ +F+++ L ++++L+ D+ R + Sbjct: 300 ETCTAPGGRLLRHWLLYPLSEVAPIRRRQDAVGYFVEHASLRRSVREVLEGVHDLERLAA 359 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----------- 428 R+ +G P+D+ +RD + + + +L P G L +P Sbjct: 360 RVGLGVATPRDLGRLRDSL---VQLPSLSALLASPVVQAGGESPLDAVPALLRFNNAILG 416 Query: 429 --QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 L+ LS L D+ R+GGF+R G +DE+RSL D SK I +++ + E T Sbjct: 417 ELAELQGLLSRALVDEPGPLAREGGFIRAGYCRIVDESRSLADGSKEAILAIETRERERT 476 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 I +LK+K+N GY+IEVT ++ + + + ++ +QT++ R+ T EL +LE + Sbjct: 477 GIGSLKVKYNRVFGYYIEVTKANLARVPAE------YVRKQTIATGERYVTTELAELETK 530 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 + A L E E F L A+ E++ L + + +A ID LA +A ++Y P + Sbjct: 531 VLGAQERLLEREQELFAELCAAVGERAGGLRDVGERVAGIDCLANLAEIAHVRDYRCPEV 590 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 D+ + +GRHP+VE+T+ + F+ NDC L D ++ L+TGPNM GKST+ Sbjct: 591 DDGERLEIVEGRHPVVERTV---PTGRFVPNDCQL----DPREAQILLITGPNMAGKSTY 643 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ A IV++AQMGS+VPA A +GIVD++++RVG+ADNLA G STFMVEM ET++I+ Sbjct: 644 MRQVAQIVVLAQMGSFVPAKRARVGIVDRVYTRVGAADNLARGESTFMVEMRETSAIMRG 703 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT +S V+LDE+GRGT+T DG+SIAWA EYLH+ R L ATH+HEL LS+ R Sbjct: 704 ATRRSLVVLDEVGRGTSTFDGVSIAWAVTEYLHDAIGARTLFATHYHELCALSEVRPRVR 763 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN 846 N ++ + + I+FL +V+ G A SYGI+V +LAGLP +++SRA IL E + Sbjct: 764 NVSMAIREHEGDIVFLRQVVAGGASKSYGIEVARLAGLPRSLVSRARQILAQLEGGREWH 823 Query: 847 QKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 Q + Q+ + VE+++ L+ M+P+ AL+ L Sbjct: 824 QPSQLTLFSAAQSAPPDEPEGEAGGAIVERLRGLDPQRMTPIEALQVL 871 >gi|313574721|emb|CBX26213.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] Length = 439 Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust. Identities = 264/438 (60%), Positives = 336/438 (76%) Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 N RLD++ + I + L + ++ LK D+PR+LSRL + RG P+D+ IR G+ S I Sbjct: 1 NARLDAVAYLIDDVSLCDGLRDALKHVADMPRALSRLALERGGPRDLGAIRQGLVSAEKI 60 Query: 405 LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDET 464 + LP+EL A++ LK LP +LE L SML+DDLP KRDGGFLR+GA+ LDE Sbjct: 61 AAILDDGLLPDELAMALKDLKALPGALEAMLGSMLADDLPLLKRDGGFLREGANPELDEV 120 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 R+LRDQS+R+IA LQLKYA+ET IK+LKIKHNN LGYFIEVT+ +A V+ E+K RFI Sbjct: 121 RALRDQSRRVIAGLQLKYADETGIKSLKIKHNNVLGYFIEVTAGNADVMMATDEAKARFI 180 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 HRQTM+ RFTT EL DLE+RI NA AL +ELE+F + A+++Q+E++ + +A Sbjct: 181 HRQTMAGAMRFTTTELADLESRIANAAAQALTMELEAFARMVEAVVQQAEAIKAGAAALA 240 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 ID++ +LA LA EQ YCRPI+D S F ++ GRHP+VE+ L++QS+ PFIAN+CDLS Sbjct: 241 TIDVASSLAYLATEQAYCRPIVDASMTFAIRGGRHPVVEQALRRQSAGPFIANNCDLSAT 300 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 +G +WLLTGPNMGGKSTFLRQNALI I+AQ+GS+VPA AHIG+VD+LFSRVG++D Sbjct: 301 EGGKNGAIWLLTGPNMGGKSTFLRQNALIAILAQIGSFVPAEAAHIGVVDRLFSRVGASD 360 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 +LA GRSTFMVEM+ETA+ILNQAT++S VILDEIGRGTAT DGLSIAWA +E+LHE NRC Sbjct: 361 DLARGRSTFMVEMVETAAILNQATDRSLVILDEIGRGTATFDGLSIAWAAVEHLHEVNRC 420 Query: 765 RGLLATHFHELTDLSKSL 782 RGL ATHFHELT LS+ L Sbjct: 421 RGLFATHFHELTVLSEKL 438 >gi|313574673|emb|CBX26189.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] Length = 439 Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust. Identities = 262/438 (59%), Positives = 335/438 (76%) Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 N RLD++ + I + L + ++ LK D+PR+LSRL + RG P+D+ IR G+ S + Sbjct: 1 NARLDAVAYLIDDVSLCDGLRDALKQVADMPRALSRLALERGGPRDLGAIRQGLASAERV 60 Query: 405 LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDET 464 + + LP+EL A+ LK LP LE L SML+DDLP KRDGGFLR+GA+ LD+ Sbjct: 61 AAILDQGLLPQELAAALADLKALPGGLEAMLGSMLADDLPLLKRDGGFLREGANPELDDV 120 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 R+LRDQS+R+IA LQL+YAEET IK+LKIKHNN LGYFIEVT+ +A V+ E+K RFI Sbjct: 121 RALRDQSRRVIAGLQLQYAEETGIKSLKIKHNNVLGYFIEVTAGNADVMMATDEAKARFI 180 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 HRQTM+ RFTT EL DLE+RI NA AL +ELE+F + A+++Q+E++ + +A Sbjct: 181 HRQTMAGAMRFTTTELADLESRIANAAAEALTMELEAFGRMVEAVVQQAEAIKAGALALA 240 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 ++D++ +LA LA EQ YCRPI+D S F + GRHP+VE+ L++QS+ PFIAN+CDLS Sbjct: 241 VVDVASSLAYLATEQAYCRPIVDASMTFAINGGRHPVVEQALRRQSAGPFIANNCDLSAA 300 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 +G +WLLTGPNMGGKSTFLRQNALI I+AQ+GS+VPA AHIGIVD+LFSRVG++D Sbjct: 301 EGGKNGAIWLLTGPNMGGKSTFLRQNALIAILAQIGSFVPAEAAHIGIVDRLFSRVGASD 360 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 +LA GRSTFMVEM+ETA+ILNQAT++S VILDEIGRGTAT DGLSIAWA +E+LHE NRC Sbjct: 361 DLARGRSTFMVEMVETAAILNQATDRSLVILDEIGRGTATFDGLSIAWAAVEHLHEVNRC 420 Query: 765 RGLLATHFHELTDLSKSL 782 RGL ATHFHELT LS+ L Sbjct: 421 RGLFATHFHELTVLSEKL 438 >gi|328866866|gb|EGG15249.1| mutS like protein [Dictyostelium fasciculatum] Length = 1062 Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust. Identities = 332/852 (38%), Positives = 512/852 (60%), Gaps = 50/852 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRG-KHLGKDIPMC 84 TP M+QY K + P ++ +R+GDFYE+F DDA+ S L ITLT RG K+ +IPMC Sbjct: 211 TPAMQQYYHFKKLYPSHILLFRIGDFYEMFNDDAITVSSLLHITLTSRGIKNTTSEIPMC 270 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G P H+A++YI+KLI+ G +A+C+Q+ES +++K +G+K + R+ V VTPGT+ ED+ Sbjct: 271 GFPYHSADNYIEKLIRHGKTVAVCDQVES-VQSKSKGSKVVKRQVVRV-VTPGTVYEDRF 328 Query: 145 LSPTDSNYLMAV--------------ARIRTE--------WAIAWIDISTGIFKISTSNH 182 L P +NYL+++ +R++++ + ++W+D+STG F +S + + Sbjct: 329 LQPFQNNYLLSLYPSNESMIKKNNTTSRVKSKEEDMTNQKFILSWLDLSTGQFYLSQTTY 388 Query: 183 DRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAV---AQPNVFFDHSISESRIAD 239 D L +I RI P EI+ + + + + + + +V + + +++ +HS+ + Sbjct: 389 DNLAGEIYRISPSEILLPKIFIDNQDITKMLKPY-HVTIEDTSNYSLYNNHSMFKEAYDG 447 Query: 240 YYNITTV-DTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARS 298 ++ V D+F +FS + A + ++YI TQ+ P + ++ Q ++ ID + R+ Sbjct: 448 IDDLQMVSDSFPNFSVEQLGVAGSILNYIYNTQLGRIPHVYQLQQYSQQQSMSIDYSTRN 507 Query: 299 NLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP 358 +LE+ +TL +R+ SLL ID + T G RL R+ SP +IN RL+ + +F N Sbjct: 508 SLELTKTLQNTRKGSLLDVIDKTQTATGSRLLHYRLQSPSLSIEEINCRLNLLEYFHDNN 567 Query: 359 ILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELR 418 L+ ++ L D+ R L R+ IG+ P+D+A I + S N+ ++ K+ + R Sbjct: 568 DLVRETRRHLSRCHDLERCLQRVYIGKAGPRDLASIGSTLSSLSNLKSIISKHLSSKANR 627 Query: 419 GAV--EKLKKLPQS------LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQ 470 G V ++L +L S L LS L D+ P +DGGF++ L E + RD Sbjct: 628 GHVGNKQLIQLVDSIADFDQLLNELSEALVDNPPIGTQDGGFIQQSYSKELKEFINTRDH 687 Query: 471 SKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMS 530 SK +I+ +Q KY + LKIK+ +G+F E+ S++ + + FIH QT+ Sbjct: 688 SKELISGIQKKYRSSLSLSTLKIKYTQAIGHFFEILSTNRHKIP------NHFIHVQTLM 741 Query: 531 NLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISI 590 + RF + +LI++E +I A + A IE++ F+ L + I E + + ASQ++A IDIS Sbjct: 742 SHMRFKSSDLIEMEEKINRAQSQAYEIEIQIFQQLCDLIKEYGDKIKEASQILAQIDIST 801 Query: 591 ALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE--KTLKQQSSKPFIANDCDLSCPNDKN 648 +LA+++ E+NY RP I + GRHP VE + K S K FI NDC L D N Sbjct: 802 SLALISHERNYIRPKISEKPILNIIGGRHPTVEVAQMEKIGSFKQFITNDCHLDY--DTN 859 Query: 649 SGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLAS 708 +G L L+TGPNMGGKSTF+RQNALI IMAQMG +VPA A IGI D +FSRVGS+D+LA+ Sbjct: 860 TG-LILITGPNMGGKSTFIRQNALITIMAQMGCFVPADSAEIGISDSVFSRVGSSDDLAN 918 Query: 709 GRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLL 768 RSTFMVEM+ETASIL +AT++S VI+DE+GRGT+TLDG +IA A IE+L+ N+ R L Sbjct: 919 DRSTFMVEMVETASILKKATSRSLVIMDEVGRGTSTLDGAAIARAVIEHLY-ANKTRTLF 977 Query: 769 ATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTV 828 ATH HELT L+ + L V + ++ ++F HKV+PGI++ SYGI +LAG+P +V Sbjct: 978 ATHHHELTSLASHMPNIQCYALAVKEEDDDLLFTHKVMPGISNKSYGIFCARLAGVPLSV 1037 Query: 829 ISRAYDILKTFE 840 I R+ IL+ E Sbjct: 1038 IQRSQQILEQLE 1049 >gi|313574681|emb|CBX26193.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] Length = 439 Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust. Identities = 264/438 (60%), Positives = 336/438 (76%) Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 N RLD++ + I + L + ++ LK D+PR+LSRL + RG P+D+ IR G+ S I Sbjct: 1 NARLDAVAYLIDDVSLCDGLRDALKQVADMPRALSRLALERGGPRDLGAIRQGLASAERI 60 Query: 405 LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDET 464 + + LP+EL A+ LK LP LE L SML+DDLP KRDGGFLR+GA+ LD+ Sbjct: 61 AAILDQGLLPQELAAALADLKALPGGLEAMLGSMLADDLPLLKRDGGFLREGANPELDDV 120 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 R+LRDQS+R+IA LQL+YAEET IK+LKIKHNN LGYFIEVT+ +A V+ E+K FI Sbjct: 121 RALRDQSRRVIAGLQLQYAEETGIKSLKIKHNNVLGYFIEVTAGNADVMMATDEAKALFI 180 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 HRQTM+ RFTT EL DLE+RI NA AL +ELE+FE + A+++Q+E++ + +A Sbjct: 181 HRQTMAGAMRFTTTELADLESRIANAAAEALTMELEAFERMVEAVVQQAEAIKAGALALA 240 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 +ID++ +LA LA EQ YCRPI+D S F + GRHP+VE+ L++QS+ PFIAN+CDLS Sbjct: 241 VIDVASSLAYLATEQAYCRPIVDASMTFAITGGRHPVVEQALRRQSAGPFIANNCDLSAI 300 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 + +G +WLLTGPNMGGKSTFLRQNALI I+AQ+GS+VPA AHIGIVD+LFSRVG++D Sbjct: 301 DGGKNGAIWLLTGPNMGGKSTFLRQNALIAILAQIGSFVPAEAAHIGIVDRLFSRVGASD 360 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 +LA GRSTFMVEM+ETA+ILNQAT++S VILDEIGRGTAT DGLSIAWA +E+LHE NRC Sbjct: 361 DLARGRSTFMVEMVETAAILNQATDRSLVILDEIGRGTATFDGLSIAWAAVEHLHEVNRC 420 Query: 765 RGLLATHFHELTDLSKSL 782 RGL ATHFHELT LS+ L Sbjct: 421 RGLFATHFHELTVLSEKL 438 >gi|256822659|ref|YP_003146622.1| DNA mismatch repair protein MutS [Kangiella koreensis DSM 16069] gi|256796198|gb|ACV26854.1| DNA mismatch repair protein MutS [Kangiella koreensis DSM 16069] Length = 864 Score = 556 bits (1432), Expect = e-156, Method: Compositional matrix adjust. Identities = 317/892 (35%), Positives = 505/892 (56%), Gaps = 41/892 (4%) Query: 13 SEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTK 72 +EQ ++L TPMMRQY ++K + D L+FYRMGDFYELF+DDA A+ L ITLTK Sbjct: 4 TEQETSPKHLDQHTPMMRQYWQLKQDHMDYLLFYRMGDFYELFYDDAKRAAELLDITLTK 63 Query: 73 RGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVR 132 RG G+ IPM GVP H + Y+ +++K+G +AICEQI P +K V R VVR Sbjct: 64 RGSSAGEPIPMAGVPFHAVDSYLARIVKLGESVAICEQIGDPATSK-----GPVDRKVVR 118 Query: 133 LVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMR 191 +VTPGTL ++ LL L A + R + +A +D+++G F +S N + +++ R Sbjct: 119 IVTPGTLYDENLLDALSDKLLAAAYKKRNHYGLACLDMASGRFWLSEFDNKNAFQAELFR 178 Query: 192 IDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS 251 I P E+I ++ + + L + L QP+ FD + ++ +++ + ++ +FG Sbjct: 179 IKPAELILADNQ------QELTQGLTTANKWQPDWAFDFEQNRDKLLNHFAVQSLASFGC 232 Query: 252 FS-QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR 310 ++ AA A + Y K TQ+ N P I ++ + L +D A R NLE+ + G + Sbjct: 233 EDYELAICAAGAVLDYAKTTQLNNLPHIHLLQKLEHSDQLVLDPATRRNLELTENIQGGQ 292 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 +L + ++ + T G RL + +PL+ + RLDS+ + ++ IQ IL Sbjct: 293 NNTLFEVMNSTKTVMGARLLKRWLHAPLSSHDNVQKRLDSVENLTHDHAFVS-IQPILSE 351 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS 430 D+ R ++R+ + P+D+ ++ G+ +L+ + ++ + ++ L +L Q Sbjct: 352 IADIERIVTRIALASANPRDLKRLQQGLTQSTLLLDELQQLNIKLDQAQYIQPLPELQQL 411 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 LE L + P RDGG + G +A LDE RSL D + + SL+ + +E+ I Sbjct: 412 LEHALV----EQPPMVIRDGGVIAQGFNAELDELRSLADDANEFMLSLERREKQESGINT 467 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ +N G++IE++ + + ++ +I RQT+ N RF T EL + E ++ + Sbjct: 468 LKVGYNKVHGFYIEISRAQSH------QAPAHYIRRQTLKNAERFITPELKEYEEKVLTS 521 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 AL +E ++ L + + + + + IA ID+ + A + RP + N Sbjct: 522 KTRALALEKRLYDELIQELQQHVAKIQSTASAIAEIDVLACFSERATNLGFNRPTLSNKD 581 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 +K GRHP+VE S +PFI N+ +++ N + ++TGPNMGGKST++RQ Sbjct: 582 GIEIKQGRHPVVEF----HSKEPFIPNNLNIN-----NQERSLIITGPNMGGKSTYMRQT 632 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI ++A +GSYVPA +A IG +D++F+R+G++D+LASGRSTFMVEM ETA+ILN AT+ Sbjct: 633 ALITLLAYVGSYVPAEHAEIGPIDRIFTRIGASDDLASGRSTFMVEMSETANILNNATSN 692 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN--- 787 S ++LDEIGRGT+T DGL++A ATI+Y+HE + L ATH+ ELT ++ N Sbjct: 693 SLILLDEIGRGTSTFDGLALASATIQYIHEKLQSYTLFATHYFELTQQAEQWDAMVNLHF 752 Query: 788 -ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN 846 AT E +IF H++ G A+ SYGIQV +LAGLP TVI +A +L+ FE+ H Sbjct: 753 SATEHKDAGQEKLIFSHQIQAGPANQSYGIQVAQLAGLPKTVIQQARLLLQHFEQ---HG 809 Query: 847 QKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L E++ ES + + + + E ++ NLDEM+P AL+ LY +K Sbjct: 810 THETELPQIELELLESAQSNPELEAM-AELVQSANLDEMTPREALELLYKLK 860 >gi|325263900|ref|ZP_08130633.1| DNA mismatch repair protein MutS [Clostridium sp. D5] gi|324030938|gb|EGB92220.1| DNA mismatch repair protein MutS [Clostridium sp. D5] Length = 883 Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust. Identities = 323/898 (35%), Positives = 515/898 (57%), Gaps = 51/898 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+E K PD ++FYR+GDFYE+FF+DA+ SR L ITLT + L + PMCG Sbjct: 5 TPMMQQYMETKKQYPDCILFYRLGDFYEMFFEDAITVSRELEITLTGKSCGLEERAPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H ++Y+ KL++ G+++AICEQ+E P +AK LV+R+VVR+VTPGT Q L Sbjct: 65 VPYHAVDNYLNKLVERGYKVAICEQMEDPKQAK-----GLVKRDVVRIVTPGTNLAPQAL 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEK-E 203 T +NYLM + I + ++ DI+TG F + +L+ ++ + P EII +E Sbjct: 120 DETKNNYLMCIVYIADRYGLSIADITTGDYFVTEIPDSMKLMDELYKFMPSEIICNESFY 179 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAA 262 +S + L LG + +FD +I ++ +++++++ G +A A Sbjct: 180 MSGMDLDDLRNRLGIAIYSLDAWYFDDAICRQKLLEHFHVSSFAGLGLEDYDCGIISAGA 239 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYS 321 + Y+ +TQ N + + + +DS+ R NLE+ TL +++ SLL +D + Sbjct: 240 LLQYLLETQKNNLSHLTHITPYTTGKYMMLDSSTRRNLELCETLREKQKRGSLLWVLDKT 299 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G R + + PL + +I RLD++ N I I++ L D+ R ++R+ Sbjct: 300 KTAMGARTLRKYVEQPLIEKEEILRRLDAVEELKGNAISREEIREYLTPVYDLERLITRI 359 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 G P+D+ + + ++ + + P L G + L L + L + + D Sbjct: 360 TYGSANPRDLTALCSSLEMLPHVKYILEEMQSPL-LCGVRDDLDTL-EDLCTLIKDAVID 417 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 D P ++GG +RDG +D R + K+ +A L+ + E++ IKNLKIK+N GY Sbjct: 418 DPPLAMKEGGIIRDGYSEEVDTLRHAKSDGKQWLAKLEEEEREKSGIKNLKIKYNKVFGY 477 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 ++EVT+S KDL D + +QT++N R+ T EL +LE+ I A + +E E Sbjct: 478 YLEVTNSY-----KDL-VPDYYTRKQTLANAERYITPELKELEDTILGAEDKLYALEYEL 531 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 + + + I + E + ++ IA +D+ ++A++A+ NY RP I+ +KDGRHP+ Sbjct: 532 YSTVRDTIAGEVERIQKTAKAIAALDVFASIALVAERNNYVRPKINEKGIIDIKDGRHPV 591 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VEK + FI+ND L D ++ ++TGPNM GKST++RQ ALIV+MAQ+GS Sbjct: 592 VEKMIPNDM---FISNDTYL----DDKKQRISIITGPNMAGKSTYMRQAALIVLMAQLGS 644 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 YVPAS A+IG+VD++F+RVG++D+LASG+STFMVEM E A+IL AT++S +ILDEIGRG Sbjct: 645 YVPASNANIGLVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSKSLLILDEIGRG 704 Query: 742 TATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 T+T DGLSIAWA +EY+ +T+ + L ATH+HELT+L ++ +N + V + + I Sbjct: 705 TSTFDGLSIAWAVVEYISDTHLLGAKTLFATHYHELTELEGKIENVNNYCIAVKEKGDDI 764 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 +FL K++ G AD SYGIQV KLAG+P+ VI RA +I++ + +D+ EI Sbjct: 765 VFLRKIVKGGADKSYGIQVAKLAGVPDIVIDRAKEIVEEL------SDEDITTRVSEIAV 818 Query: 860 KESKNNL-------------------SKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 KE + + D +E++K +++ ++P+ AL +Y ++ Sbjct: 819 KEHETKKKPKVKKYDEVDIAQMSLFDTVKDGDVLEELKNIDVGNLTPIDALNAIYRLQ 876 >gi|153811376|ref|ZP_01964044.1| hypothetical protein RUMOBE_01768 [Ruminococcus obeum ATCC 29174] gi|149832503|gb|EDM87587.1| hypothetical protein RUMOBE_01768 [Ruminococcus obeum ATCC 29174] Length = 872 Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust. Identities = 319/885 (36%), Positives = 521/885 (58%), Gaps = 40/885 (4%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MMR+Y + K D ++FYR+GDFYE+FFDDA+L S+ L +TLT + L + PMCG+P Sbjct: 1 MMREYCKTKENYKDCILFYRLGDFYEMFFDDAILVSKELELTLTGKDCGLEERAPMCGIP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A YI++LI+ GH++AICEQ+E P +AK LV+R V+R+VTPGT + L Sbjct: 61 FHAAETYIKRLIEKGHKVAICEQVEDPKKAK-----GLVKREVIRVVTPGTTLDATSLDE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKE-LS 205 + +NYLM++ + + A DI+TG F +L+ +I + P EII ++ +S Sbjct: 116 SRNNYLMSIVSLEDHFGCAIADITTGDCFLTEVDKPQKLLDEINKFVPAEIICNDAFFMS 175 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI- 264 + + L + L N +FD S+ + + +++++ T++ G AA A+ Sbjct: 176 GVDTEDLKDRLRICIFPLDNWYFDDSLCQRTLKEHFHVNTLEGLGLQDYDSGVIAAGALF 235 Query: 265 SYIKKTQ---MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDY 320 Y+ +TQ + + TI +P D + IDS++R NLE++ TL +++ SLL +D Sbjct: 236 QYLNETQKTALSHMATI-HPYTAD--KFMLIDSSSRRNLELVETLREKQKRGSLLWVLDK 292 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G R + PL D+ +IN RL ++ Q P+L + I++ L D+ R +SR Sbjct: 293 TKTAMGARTLRGYVEQPLIDAEEINLRLGAVEELTQKPMLRDEIREYLNPIYDLERLISR 352 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + P+D+ + I + + + P L+ E + L + + + ++ Sbjct: 353 ISYQSANPRDMVAFASSLEMIPYIRQILQEFEAPI-LKQIFEDMDPL-EDVTDLIKRAIT 410 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D+ P ++DGG +R+G +A +D+ R R K+ +A L+ + E T IK LKIK++ G Sbjct: 411 DEPPLAQKDGGIIREGYNADVDKYRHSRTDGKKWLAELEAREKERTGIKTLKIKYSRVFG 470 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y +EVT+S KD + D ++ +QT++N R+ T EL DLE+ I A + +E E Sbjct: 471 YALEVTNSF-----KD-QVPDNYVRKQTLTNAERYITQELKDLEDLILGAEDRLYALEYE 524 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F + + + ++ + ++ IA +D+ +LA++A+ N+ RP I+ + +K+GRHP Sbjct: 525 LFADVRDKVGKEVVRIQKTAKAIAALDVFASLALVAERNNFVRPKINENGVLDIKNGRHP 584 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE+ ++ FIAND L D ++ ++TGPNM GKST++RQ ALIV+MAQ+G Sbjct: 585 VVEQMIENDM---FIANDTYL----DNQKKRVSIITGPNMAGKSTYMRQTALIVLMAQIG 637 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA A+IGIVD++F+RVG++D+LASG+STFMVEM E A+IL AT++S +ILDEIGR Sbjct: 638 SFVPAEKANIGIVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSRSLLILDEIGR 697 Query: 741 GTATLDGLSIAWATIEYLHETNRC--RGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GT+T DGL+IAW+ IE++ T C + L ATH+HELT+L + +N + V + + Sbjct: 698 GTSTFDGLAIAWSVIEHISNTKLCGAKTLFATHYHELTELEGKIPGVNNYCIAVKEKGDD 757 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--------KLYHHNQKDM 850 I+FL K++ G AD SYGIQV KLAG+P++VI+RA ++++ K +K Sbjct: 758 IVFLRKIVKGGADKSYGIQVAKLAGVPDSVINRAKELVEELSDADITAAVKDLTAPKKKQ 817 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 ++ Y ++ + + D V++I+ L++ ++P+ A+ LY Sbjct: 818 KIVYDQVDMAQMSLFDTVQDNDIVDEIRDLDMTHLTPMEAMNILY 862 >gi|154504380|ref|ZP_02041118.1| hypothetical protein RUMGNA_01884 [Ruminococcus gnavus ATCC 29149] gi|153795309|gb|EDN77729.1| hypothetical protein RUMGNA_01884 [Ruminococcus gnavus ATCC 29149] Length = 895 Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust. Identities = 320/904 (35%), Positives = 518/904 (57%), Gaps = 49/904 (5%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 E+ + TPMM+QYIE K D ++FYR+GDFYE+FF+DAL ASR L ITLT GK+ G Sbjct: 10 EKRVAELTPMMQQYIETKKQYQDCILFYRLGDFYEMFFEDALTASRELEITLT--GKNCG 67 Query: 79 KD--IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTP 136 ++ PMCGVP H Y+ KL+ G+++AICEQ+E P +AK +V+R VVR+VTP Sbjct: 68 QEEKAPMCGVPYHAVEGYLNKLVSKGYKVAICEQVEDPKQAK-----GIVKREVVRIVTP 122 Query: 137 GTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPR 195 GT + Q L T +NY+M + I + ++ D++TG F +L+ +I R P Sbjct: 123 GTNLDTQALDETKNNYIMCIVYIADRYGLSIADVTTGDYFVTELEESAKLLDEIYRFMPS 182 Query: 196 EIIFSEKE-LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFS 253 EII +E +S + L + LG + + +FD ++ ++ +++ + + G Sbjct: 183 EIICNESYYMSGMDLDDLKDRLGITIYSLDSWYFDDAVCRQKLLEHFKVASFAGLGLEDY 242 Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ- 312 +A A + Y+ +TQ + + + + +DS+ R NLE+ TL +++ Sbjct: 243 DCGIISAGALLQYLYETQKNSLAQLTHITAYTTGKYMMLDSSTRRNLELCETLREKQKRG 302 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 SLL +D + T G R+ + + PL + +I RLD++ + I I++ L Sbjct: 303 SLLWVLDKTKTAMGARMLRKYVEQPLIEKKEILRRLDAVEELKEQAICREEIREYLSPVY 362 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQS 430 D+ R ++++ G P+D+ + I + L+ L EE++ ++ L + Sbjct: 363 DLERLVTKITYGSANPRDLTAFGSSLTMLPPICCIMEDLRAPLLEEIKEELDPL----ED 418 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 + + ++++ P ++GG +RDG +D R + + K +A L+ + E+T IKN Sbjct: 419 ISALIKEAIAEEPPLAMKEGGIIRDGYSEEVDTLRRAKSEGKDWLAKLESEEREKTGIKN 478 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LKIK+N GY++EVT+S ++ D + +QT++N R+ EL +LE+ I A Sbjct: 479 LKIKYNKVFGYYLEVTNSFKDMVP------DYYTRKQTLANAERYIIPELKELEDTILGA 532 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 + +E E + + N I Q E + ++ IA +D+ +LA++A+ NY RP I+ Sbjct: 533 EDKLYALEYEIYCDVRNQIAAQVERIQTTAKAIAKVDVFASLALVAERSNYVRPKINEQG 592 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 +KDGRHP+VEK + + FI+ND L D ++ ++TGPNM GKST++RQ Sbjct: 593 VIDIKDGRHPVVEKMI---PNDMFISNDTYL----DDKKQRISIITGPNMAGKSTYMRQA 645 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALIV+MAQ+GS+VPAS A+IG+VD++F+RVG++D+LASG+STFMVEM E A+IL AT++ Sbjct: 646 ALIVLMAQLGSFVPASSANIGLVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSK 705 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRG---LLATHFHELTDLSKSLKRFHN 787 S +ILDEIGRGT+T DGLSIAWA +EY+ + N+ G L ATH+HELT+L + +N Sbjct: 706 SLLILDEIGRGTSTFDGLSIAWAVVEYISD-NKLLGAKTLFATHYHELTELEGKIHNVNN 764 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF-------- 839 + V + + I+FL K++ G AD SYGIQV KLAG+P+ VI+RA +I++ Sbjct: 765 YCIAVKEKGDDIVFLRKIVKGGADKSYGIQVAKLAGVPDVVITRAKEIVEELSDEDITTR 824 Query: 840 -----EKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 + +K Y E+ + + D +E++K +++ ++P+ AL T+ Sbjct: 825 VSEIASREKEQKKKQKTKKYDEVDMAQMSLFDTVKDDDVLEELKSIDVGNLTPVDALNTI 884 Query: 895 YAVK 898 Y ++ Sbjct: 885 YRLQ 888 >gi|206889472|ref|YP_002248548.1| DNA mismatch repair protein MutS [Thermodesulfovibrio yellowstonii DSM 11347] gi|238058946|sp|B5YJY3|MUTS_THEYD RecName: Full=DNA mismatch repair protein mutS gi|206741410|gb|ACI20467.1| DNA mismatch repair protein MutS [Thermodesulfovibrio yellowstonii DSM 11347] Length = 852 Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust. Identities = 315/828 (38%), Positives = 505/828 (60%), Gaps = 49/828 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+MRQY+ +K D++VF+R+GDFYE+F +DA++AS+ LGITLT R K K IPMCG Sbjct: 9 TPLMRQYLRVKEQYKDAIVFFRLGDFYEMFGEDAVIASKILGITLTSRDKSKEKAIPMCG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P +A+ YI+KL++ G+++AICEQI P + +K +V R V++++TPGT + + Sbjct: 69 IPYFSADSYIEKLLREGYKVAICEQIGDP-----KTSKGIVEREVIKVLTPGTYLPEGV- 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 ++ Y+M++ + + IA DI+TG F + ++ + + +I R +P+EI+ + Sbjct: 123 --RENIYIMSIYPSKGKIGIALADITTGQFFLYETDKN-ITDEIERFEPKEILIP----A 175 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS--FSQVEKTAAAAA 263 E FE + FD+ ++ + +++ + ++ ++G+ FS +A A Sbjct: 176 SFEDSLKFEISSYNKTFIEDWKFDYLLAYKTLLEHFKVASLKSYGAEEFSNA-ISAGGAL 234 Query: 264 ISYIKKTQMVNKPTIGYPERE--DIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 + Y+++ NK + + ++ + +D++ + NLEI +L GSRE SL+ +D + Sbjct: 235 LKYLEE----NKQQTEFKGIKILNLSEFMLLDASTKKNLEIFVSLDGSREGSLIWVLDET 290 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +T G R ++ PL + ++I R D I F + +L ++KILK PD+ R ++ Sbjct: 291 LTPMGARFLKNTLSCPLLNISEIEKRFDGIEAFCGDYLLREKLEKILKDFPDIERIALKI 350 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK------TL 435 K PK++ +++ ++ +L E LR E L L SL + + Sbjct: 351 KGKSINPKELNSLKNALKR---------IPELREVLRNKTEILNSLYNSLYELNELVTKI 401 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + L+++ P +GG RDG ++++DE R+LR +SK+ I +++ + ++T I +LKI + Sbjct: 402 ENALTENPPPVITEGGIFRDGYNSTIDELRALRTESKKYILNMEAEERKKTGINSLKIGY 461 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+IEVT + ++ +I +QT++N RF T EL +LE +I +A Sbjct: 462 NRVFGYYIEVTKPNLHLVP------SHYIRKQTLANAERFITEELKELELKIMSAEEKLK 515 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 ++E E F L N+I+ ++ + N + I ID ++LA +A + NY RP I+ +K Sbjct: 516 ILEQELFIELVNSILPFTDKILNNGETIGFIDFLLSLAKVASKYNYVRPEINEEDIIEIK 575 Query: 616 DGRHPIVEK--TLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 DGRHP++E+ L + FI ND L P D+ ++ +LTGPNM GKST++RQNALI Sbjct: 576 DGRHPVIERLIQLGKLYEGRFIPNDL-LIGPADQ---RIIILTGPNMAGKSTYMRQNALI 631 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 V+MAQ+GS+VPA YA IGIVD++F+R+G++D LA G+STFMVEMIETA+ILN AT +SF+ Sbjct: 632 VLMAQIGSFVPAKYAKIGIVDRIFTRIGASDYLAKGQSTFMVEMIETANILNNATPKSFI 691 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ILDE+GRGT+T DG+SIAW+ +EY+ E + R L ATH+HELTDL+ +L N T+ V Sbjct: 692 ILDEVGRGTSTFDGISIAWSVVEYIAEKIKARTLFATHYHELTDLAFNLDCIKNFTVVVK 751 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 + + IIFL K+ G AD SYGIQV +LAGLP +++RA +IL EK Sbjct: 752 EWGDEIIFLRKIQEGGADKSYGIQVARLAGLPLEILNRAREILHRLEK 799 >gi|168702353|ref|ZP_02734630.1| DNA mismatch repair protein [Gemmata obscuriglobus UQM 2246] Length = 861 Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust. Identities = 320/821 (38%), Positives = 488/821 (59%), Gaps = 36/821 (4%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY + K+ +P +V +R GDFYELF DDA L SR LGITLTKR IPM GVP Sbjct: 1 MMQQYHDAKNQHPGMIVLFRNGDFYELFEDDAELGSRVLGITLTKRDG----SIPMAGVP 56 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 VH HY+ L++ GHR+A+CEQ+E P KK ++ R V R+VTPGT+T+D LL P Sbjct: 57 VHKLEHYLGLLLRAGHRVAVCEQMEDPDPKKK-----IIHREVNRIVTPGTVTDDGLLDP 111 Query: 148 TDSNYLMAVARIRTEW-AIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSH 206 N+L+AVA + + +AW+D+STG F + RL ++ R+ E +++E L++ Sbjct: 112 RAPNHLVAVAPGKPGFFGLAWVDLSTGHFAATDVPAPRLQDELSRLSAVECLYAEG-LTN 170 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAIS 265 A ++ L VA+P+ FD + + + + ++ + T+ FG +Q AA A + Sbjct: 171 AVSQAAGTYLPKSRVARPDWTFDPATALAALKTHFAVGTLTGFGFDDAQSCLVAAGAVVI 230 Query: 266 YIKKTQMVNKPTIGY--PEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 Y+++T + I P R D + L +D R +LE+ RTL R+ SLL +D ++ Sbjct: 231 YLQETLKASLQHIRRLRPHRPD--ALLTLDEVTRRSLELTRTLRDNQRDGSLLSVLDRTV 288 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G RL + + +PLTD+T I+ RLD++ +++ L ++ L + D+ R +R+ Sbjct: 289 TPMGARLLHDSVLAPLTDATAISARLDAVEELLKDHALRQSVRDQLDACSDMQRLTTRVS 348 Query: 383 IGRGEPKDIAVIRDGIR--SGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + P+D+A I +R + ++ L ++L EK +L + + L + Sbjct: 349 TAKAGPRDLAAIARTLRHLPAVKAKLTGRRSKLLQDL----EKRLELCPDIRELLDKAIE 404 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 DD P ++GG +R G A LDE R+L K IA Q + T I +LK+ +N G Sbjct: 405 DDPPHIAKEGGVIRPGFSAELDELRALTTDGKNWIARYQAQEITRTGIGSLKVGYNEIDG 464 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y++E+T+++ + ++ + H++T+ N R+ T L + E ++ A + + +EL+ Sbjct: 465 YYLEITNANET------KTPPEYKHQKTLKNAKRYYTPALREYEEKVVTAQDKSRALELQ 518 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F L + + Q+ L N ++V+A +D+ ALA LA +NY RP ++DGRHP Sbjct: 519 LFVTLRDQVAVQTPRLLNTAEVLAALDMLAALAELAAARNYVRPAFVEEPVLDIRDGRHP 578 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 ++++ L + F+ ND P+D G WL+TGPNM GKSTFLRQ ALI +MA +G Sbjct: 579 VLDQILPPGT---FVPNDVAFG-PDD---GMFWLVTGPNMAGKSTFLRQAALITLMAHVG 631 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA A +G+ D++F+RVG++D L+ G+STFMVEM E A+ILN AT +S VILDEIGR Sbjct: 632 SFVPAKSAKVGLTDRIFTRVGASDELSRGQSTFMVEMTEAANILNNATARSLVILDEIGR 691 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GT+T DG+S+AWA EYLH+T CR L ATH+HEL L+ SL R N + V + + I+ Sbjct: 692 GTSTYDGVSLAWAMTEYLHDTLACRTLFATHYHELAQLAASLPRLRNYNVLVRELADEIV 751 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 FLHK+ PG A+ SYGI V +LAG+P +V++RA +L T EK Sbjct: 752 FLHKIAPGNAERSYGIHVARLAGVPGSVLARATAVLGTLEK 792 >gi|119946988|ref|YP_944668.1| DNA mismatch repair protein MutS [Psychromonas ingrahamii 37] gi|189083182|sp|A1T004|MUTS_PSYIN RecName: Full=DNA mismatch repair protein mutS gi|119865592|gb|ABM05069.1| DNA mismatch repair protein MutS [Psychromonas ingrahamii 37] Length = 856 Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust. Identities = 325/884 (36%), Positives = 510/884 (57%), Gaps = 41/884 (4%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 + L+ TPMM+Q++ IKS PD+L+FYRMGDFYELFFDDA AS+ LGI+LT+RGK G Sbjct: 6 QQLQQHTPMMQQFLTIKSEVPDTLLFYRMGDFYELFFDDARKASQLLGISLTQRGKTGGN 65 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H+ Y+ KLI +G IAICEQI P +K V R +VR++TPGT+ Sbjct: 66 AIPMAGVPYHSVEGYLAKLIAMGESIAICEQIGDPATSK-----GPVERKLVRIITPGTV 120 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREII 198 T++ LL+ N L +V +++ + IA +D+ +G F I+ H + L +++ R++P E++ Sbjct: 121 TDEALLNDRQDNLLCSVYQLQNSFGIASLDLGSGRFIINQFQHTETLQAELQRLNPAELL 180 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 + E + E+ L E L + +P F+ + S+ + ++ + FG ++V Sbjct: 181 YPE----NFEHMDLIEHLQTIR-RRPEWEFELATSKKILNQQFSTKDLIGFGVEKAEVAL 235 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA A + YIK TQ + P + + E ++ +D+A R NLE+ + LSG + +L + Sbjct: 236 CAAGALLQYIKDTQRTSLPHLQSIQLEKNIDSVILDAATRKNLELTQNLSGGFDNTLAEV 295 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPI---LINPIQKILKSSPDV 374 +D+++T G RL I P+ + + R I I+ + L +P+++I DV Sbjct: 296 LDFTVTPMGSRLLKRWIHQPIRNFNTLTYRQTMIQTLIEQDLSSALADPLKQI----GDV 351 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R ++RL + P+D+ +R + +L DLP EL G + K L L Sbjct: 352 ERVIARLALRSARPRDLTRLRTAFSLLPELQHLI--ADLPTELVGKLNKEMGLYPELLTL 409 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L + D+ P RDGG +++G + LD+ R+L + + L+ + + T I LK+ Sbjct: 410 LEKAVIDNPPVIIRDGGVIKEGYNEELDQWRNLAKGATDYLEQLETRERQATGISTLKVG 469 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+IE + S + ++ +I RQT+ N R+ EL + E+++ ++ A Sbjct: 470 YNRVHGYYIETSRSQSDIVPA------HYIRRQTLKNTERYIIAELKEHEDKVLSSRGKA 523 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L +E + +E L + ++ ++L + +Q +A +D+ LA A NY RP + + Sbjct: 524 LALEKKLYEQLIDLLLPHLQNLQSTAQALAELDVLNNLAERAVTLNYVRPTLQAENGIEI 583 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 ++GRHP+VE Q S PFIAN L NDK ++ ++TGPNMGGKST++RQ AL+V Sbjct: 584 EEGRHPVVE----QVSKTPFIANPVML---NDKR--RMLIITGPNMGGKSTYMRQVALMV 634 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 +MA +GS++PA A IG VD++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V+ Sbjct: 635 LMAHIGSFIPAQQAKIGPVDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLVL 694 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA E L + + L ATH+ ELT L +++ N L + Sbjct: 695 MDEIGRGTSTFDGLSLAWACAEQLAKKIQAYTLFATHYFELTKLPENIPELVNVHLDAVE 754 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 + I FLH V G A+ SYG+QV LAG+P V+S A +IL+ E +Q L Sbjct: 755 HGDAIAFLHAVQEGAANKSYGLQVAALAGVPKEVVSNAKNILRQLEL---GSQPQANLNE 811 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +QT + ++ N L + + +N DE++P AL+ +Y +K Sbjct: 812 KPLQTTLAFDDAQTNQALLL--LANINPDELTPKKALELIYLLK 853 >gi|167758190|ref|ZP_02430317.1| hypothetical protein CLOSCI_00528 [Clostridium scindens ATCC 35704] gi|167664087|gb|EDS08217.1| hypothetical protein CLOSCI_00528 [Clostridium scindens ATCC 35704] Length = 876 Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust. Identities = 325/894 (36%), Positives = 518/894 (57%), Gaps = 48/894 (5%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY++ K PD ++FYR+GDFYE+FFDDAL AS+ L ITLT + L + PMCGVP Sbjct: 1 MMQQYMQTKKEYPDCILFYRLGDFYEMFFDDALTASKELEITLTGKNCGLKERAPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H + Y+ +L+ G+++AICEQ+E P AK LV+R+VVR+VTPGT + Q L Sbjct: 61 YHAVDGYLNRLVSKGYKVAICEQMEDPATAK-----GLVKRDVVRIVTPGTNLDTQSLDE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEK-ELS 205 T +NY+M V I + ++ D++TG F + ++L +I + P E+I +E +S Sbjct: 116 TKNNYIMCVVYIADRYGLSVADVTTGDYFVTELDDSEKLFDEIYKFMPSELICNEAFYMS 175 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAI 264 + + E LG + +FD +I + + ++++++T++ G S AA A + Sbjct: 176 GMDLDLMKEKLGITIYSLDAWYFDDAICQRTLKEHFHVSTMEGLGLSDYDCGIIAAGALL 235 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT 323 Y+ +TQ + I + +DS+ R NLE+ TL ++ SLL +D + T Sbjct: 236 QYLIETQKRDLSHITRLSAYATGKYMLLDSSTRRNLELCETLREKHKRGSLLWVLDKTKT 295 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G R + I PL D I RLD+++ QN I I++ L D+ R + ++ Sbjct: 296 AMGARCLRKFIEQPLIDKNSIERRLDAVDELKQNAISREEIREYLTPVYDLERLVCKITY 355 Query: 384 GRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 P+D+ + + +I + +K+ L ++L ++ L+ L +E+ + + Sbjct: 356 QSANPRDLIAFKSSLSMLPHIKYILEEMKSPLLKDLYERLDTLEDLCHLVEEAIK----E 411 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 D P ++GG +RDG + +D RS + K +A L+ E+T IKNLKI++N GY Sbjct: 412 DPPLAMKEGGIIRDGYNEEVDRLRSAKSDGKDWLAKLETDEREKTGIKNLKIRYNKVFGY 471 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 ++EVT+S ++ D + +QT++N R+ EL +LE+ I A + +E + Sbjct: 472 YLEVTNSFKHMVP------DYYTRKQTLANAERYIIPELKELEDTILGAEDKLYALEYQL 525 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 + + I ++ + ++ IA +D ++A++A++ Y RP I+ +KDGRHP+ Sbjct: 526 YCEARDKIAKEVLRIQTTAKAIAQLDAFASMALVAEQSRYVRPKINEKGVIDIKDGRHPV 585 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VEK + FI+ND L NDK + ++ ++TGPNM GKST++RQ ALIV+MAQ+GS Sbjct: 586 VEKMIPNDM---FISNDTYL---NDKKN-RISIITGPNMAGKSTYMRQTALIVLMAQIGS 638 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA+ A IG+VD++F+RVG++D+LASG+STFMVEM E A+IL AT++S +ILDEIGRG Sbjct: 639 FVPAASADIGLVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSKSLLILDEIGRG 698 Query: 742 TATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 T+T DGLSIAWA IE++ + + L ATH+HELT+L + +N + V + + I Sbjct: 699 TSTFDGLSIAWAVIEHISSSRLLGAKTLFATHYHELTELEGKIDNVNNYCIAVKEKGDDI 758 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYH------------HNQ 847 IFL K++ G AD SYGIQV +LAG+P +V SRA +I+ E+L H H Q Sbjct: 759 IFLRKIVKGGADKSYGIQVARLAGVPESVTSRAREIV---EELVHADITTRIKDIAVHGQ 815 Query: 848 KDMRL---YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + RL +Y E+ + + D +E+IK L++ ++P+ AL TLY ++ Sbjct: 816 EPPRLKARHYDEVDLAQMSLFDTVKDDDVIEEIKSLDVSNLTPIDALNTLYQLQ 869 >gi|257413988|ref|ZP_04744892.2| DNA mismatch repair protein MutS [Roseburia intestinalis L1-82] gi|257201595|gb|EEU99879.1| DNA mismatch repair protein MutS [Roseburia intestinalis L1-82] Length = 900 Score = 552 bits (1423), Expect = e-155, Method: Compositional matrix adjust. Identities = 327/897 (36%), Positives = 529/897 (58%), Gaps = 51/897 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD--IPM 83 TPMM+QY++ K D ++FYR+GDFYE+FFDDA++ S+ L +TLT GK G + PM Sbjct: 24 TPMMQQYLKTKEEYKDCILFYRLGDFYEMFFDDAIVVSKELELTLT--GKSCGAEERAPM 81 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVP H Y+ KL+ GH++AICEQ+E P AK LV+R V+R+VTPGT T+ Q Sbjct: 82 CGVPYHAVEGYLNKLVANGHKVAICEQVEDPKLAK-----GLVKREVIRIVTPGTNTDMQ 136 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREIIFSEK 202 L + +NY+M + + ++ I+ DISTG + ++ + +R LI +I + P EII +E Sbjct: 137 ALDESKNNYIMCIVYLADKYGISLADISTGDYFVTEVDTERKLIDEINKFAPSEIICNES 196 Query: 203 -ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAA 260 +S + + LG + +F +E+ + +++ + +++ G S AA Sbjct: 197 FYMSGVDLSDMKNRLGIAVYSLEAWYFSDETAENTLKEHFKVQSLEGLGLSDYACGTIAA 256 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTID 319 A + Y+ +TQ + + + IDS+ R NLE++ TL +++ SLL +D Sbjct: 257 GALLRYLYETQKNDLGNLSAIHPYSTGKYMIIDSSTRRNLELVETLREKQKRGSLLWVLD 316 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G R + PL D T+I R ++I + I +++ L D+ R ++ Sbjct: 317 KTKTAMGARTLRAYVEQPLIDKTEIELRQEAIGELNDHVITREELREYLNPIYDLERLIT 376 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKND--LPEELRGAVEKLKKLPQSLEKTLSS 437 R+ P+D+ ++ I I +L + D L + ++ ++ +++L +++++ Sbjct: 377 RVTYRTANPRDLIAFKNSISMLPPIKSLLDEFDGALLKNIQNDIDAMEELCSLVDRSIM- 435 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 ++ P R+GG +++G + +D+ R+ + + K +A L+ K E+T IKNLKIK+N Sbjct: 436 ---EEPPISVREGGLIKEGYNEDVDKYRNAKTEGKTWLAELEAKEREKTGIKNLKIKYNK 492 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY++EVT+S KDL D F +QT++N R+ T EL +LE+ I A + + + Sbjct: 493 VFGYYLEVTNSY-----KDL-VPDYFTRKQTLANAERYITPELKELEDMILGAEDKLVSL 546 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + F + N I E+ + ++ IA +D+ ++LA++A + NYCRP + NS +K G Sbjct: 547 EYDLFCEVRNKIAEEVVRIQRTAKAIANLDVFVSLAVVADQNNYCRPKMTNSGVIDIKGG 606 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VEK + ++ FI ND L D + ++ ++TGPNM GKST++RQ ALIV+MA Sbjct: 607 RHPVVEKMI---TNDMFIDNDTYL----DNGNNRIAIITGPNMAGKSTYMRQAALIVLMA 659 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+GS+VPA+ A IGIVD++F+RVG++D+LASG+STFMVEM E A+IL AT+ S ++LDE Sbjct: 660 QIGSFVPATSAKIGIVDRIFTRVGASDDLASGQSTFMVEMNEVANILRNATSNSLLVLDE 719 Query: 738 IGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 IGRGT+T DGLSIAWA +E++ + L ATH+HELT+L L HN + V + Sbjct: 720 IGRGTSTFDGLSIAWAVVEHISNPRLLGAKTLFATHYHELTELEGKLNNVHNYCIAVKEK 779 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM--RLY 853 + I+FL K++ G AD SYGIQV KLAG+P++VI RA +I+ E+L ++ + + Sbjct: 780 GDDIVFLRKIVQGGADKSYGIQVAKLAGVPDSVIERAKEIV---EELSANDITSVTKNIT 836 Query: 854 YPEIQTKESKNNLSKND----KLF--------VEKIKCLNLDEMSPLTALKTLYAVK 898 TK+ K L + D LF +E++K +++ ++P+ AL LY ++ Sbjct: 837 PATAGTKKKKERLDEVDLTQMSLFDTVKDDDILEELKTIDVGNLTPIEALNKLYELQ 893 >gi|253583467|ref|ZP_04860665.1| DNA mismatch repair protein mutS [Fusobacterium varium ATCC 27725] gi|251834039|gb|EES62602.1| DNA mismatch repair protein mutS [Fusobacterium varium ATCC 27725] Length = 874 Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust. Identities = 332/910 (36%), Positives = 528/910 (58%), Gaps = 75/910 (8%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + TP+M QY EIK N D+L+F+R+GDFYE+FFDDA++AS+ LG+TLT R + G+D+ Sbjct: 1 MAGDTPLMSQYKEIKEQNKDNLLFFRLGDFYEMFFDDAVIASKELGLTLTSRNREKGQDV 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 P+ GVP H+ + YI KL+ G+++AICEQ+E P + K +V+R VVR++TPGT+ + Sbjct: 61 PLAGVPYHSVSSYIAKLVNKGYKVAICEQVEDP-----KSVKGIVKREVVRVITPGTVID 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD----RLISDIMRIDPREI 197 L +NYLM + + AIA++DI+TG FK S + +L+ +I +I P+EI Sbjct: 116 TDYLDEKSNNYLMGIKIDGNKGAIAYVDITTGEFKASELEGEDIIFKLLGEINKIAPKEI 175 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSIS--------ESRIADYYNITTVDTF 249 + EK Y +E L + N D +IS E + DY+ + ++++F Sbjct: 176 LLEEKT-----YDKYYEEL-----KKHNTLSDVNISKITEKRKCEDYLKDYFKVISLESF 225 Query: 250 G-SFSQVEKTAAAAAISYI---KKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT 305 G ++ +A ++Y+ +K + + I Y E+I ++ + NL+I+ Sbjct: 226 GLKDRKMAIVVSATILNYVVELQKGKELPVNNILYTSSENIME---LNITTQRNLDIV-- 280 Query: 306 LSGSREQ----SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILI 361 RE+ +LL +D +T G RL + I +PL D KIN R I FFI+N +L Sbjct: 281 -DNYREKNGVGTLLWVMDECMTSMGSRLLKKFIKNPLLDIEKINERQKDIAFFIENVLLR 339 Query: 362 NPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAV 421 I++ LKS D+ R + +L + +D+ ++ I++ + IL L N + V Sbjct: 340 EEIREKLKSIYDIERIIGKLILETENGRDLISLKISIKNSLEILKLLQGNSI---FSIEV 396 Query: 422 EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLK 481 + L + +EKT+ D+ P R+GG +R G + LDE L K I ++ + Sbjct: 397 KTLIDIYNLIEKTIV----DEPPFSVREGGIIRQGYNEMLDELHGLSKDGKDYILEIENR 452 Query: 482 YAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELI 541 E T IK LKIK+N GYFIEVT ++A ++ D +I +QT++N R+ +L Sbjct: 453 ERERTGIKGLKIKYNKVFGYFIEVTRANAHLVPAD------YIRKQTLANAERYIVPDLK 506 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 + E ++ NA + +E + F+ ++ I E L + + IA +D++ LA +A + +Y Sbjct: 507 EYEEKVLNAKDKIENLEYQLFKEVAYEIKSHKEILQDLAYKIAYLDVASDLAHIAIKNSY 566 Query: 602 CRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 +P I + + GRHPIVEK + + ++ N+ ++ ++ +LTGPNM Sbjct: 567 VQPEIHAGKDIEIIAGRHPIVEKLI---PAGEYVKNNIVFD-----DNKEMIILTGPNMS 618 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKST+++Q ALI+IMA MGSYVPA+YA IG+VDK+F+R+G++D+L +G+STFM+EM E A Sbjct: 619 GKSTYMKQVALIIIMAHMGSYVPANYAKIGLVDKIFTRIGASDDLLTGQSTFMLEMSEVA 678 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS 781 +I+N ATN+SF+ILDEIGRGT+T DG+SIA A EY+HE + + ATH+HELT L Sbjct: 679 NIVNSATNRSFIILDEIGRGTSTFDGISIATAITEYIHERIGAKTIFATHYHELTQLEDK 738 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 L R N ++V ++++ I+FL +++ G AD SYGI+V +LAGLP ++ R+ +LK E Sbjct: 739 LDRAENYRIEVKENDKEIVFLREIVKGGADKSYGIEVARLAGLPKEILDRSKSVLKNLED 798 Query: 842 LYHHNQKDMR-----LY---YPEIQTKESKNN-----LSKNDKLFVEKIKCLNLDEMSPL 888 +K ++ L+ E T+E KNN L+K K+ + ++ L+ + M+PL Sbjct: 799 RKQIIEKKLKGEQLILFGTPQKEESTEEEKNNLKGKELTKEQKIVMRVLEELDPNGMTPL 858 Query: 889 TALKTLYAVK 898 AL L +K Sbjct: 859 EALLKLNELK 868 >gi|332982487|ref|YP_004463928.1| DNA mismatch repair protein MutS [Mahella australiensis 50-1 BON] gi|332700165|gb|AEE97106.1| DNA mismatch repair protein MutS [Mahella australiensis 50-1 BON] Length = 882 Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust. Identities = 321/908 (35%), Positives = 515/908 (56%), Gaps = 58/908 (6%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + S TPMM+QY+++K D L+F+R+GDFYE+FFDDA+LAS+ L +TLT R + + Sbjct: 1 MASLTPMMQQYLQLKERYKDCLLFFRLGDFYEMFFDDAVLASKELELTLTGRDCGMEERA 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H + YI +L++ G+++AICEQ+E P AK LV R+V+R++TPGT+T+ Sbjct: 61 PMCGVPYHAVDTYIARLVEKGYKVAICEQMEDPALAK-----GLVERDVIRIITPGTITD 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 +L ++NYL+ IA++DISTG I+ L ++ RI P E++ +E Sbjct: 116 GSMLDEKENNYLLCAHVNGDNCGIAFVDISTGRCSITQLQTAGLADELARIQPAEMMANE 175 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFD-----HSISESRIADYYNITTVDTFGSFSQVE 256 A + ++ +V FD +++ E+ + + D S+ E Sbjct: 176 PFFDQAGMLKTVQQRLDIKPGHCSVEFDDVDKAYAMLEANM-------SADVLDYVSKEE 228 Query: 257 KTAAAAA----ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSRE 311 A A ISY+ +TQ IG E IQ + +D+A R NLE+ T+ SGS + Sbjct: 229 MPQAVCALASLISYLIETQKTALANIGGIEVYHIQQYMILDAATRRNLELCETMRSGSHK 288 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 +L+ +D++ T GGR+ I PL + +N R +++ P+ + I++ L Sbjct: 289 GTLMWVLDHTSTAMGGRMLKSWIEQPLLNINALNERQEAVEAMANQPLWKDDIKEALSGI 348 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSL 431 D+ R +S+ G +D+ ++ + L N+L L+G +LK L Q + Sbjct: 349 YDIERLMSKAVYGNINARDLIALKQSLG------RLPRLNELA--LQGKAARLKTLGQRI 400 Query: 432 E------KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE 485 + + ++DD P +DG ++DG D S+DE R + ++ I+ L+ + + Sbjct: 401 DVMDDIYTLIDKAIADDPPLSVKDGNIIKDGYDQSVDELRDISHNGRQWISRLEQQERDR 460 Query: 486 TKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 T IK+LK+ +N GY+IEVT S ++ D +I +QT++N R+ T EL ++EN Sbjct: 461 TGIKSLKVGYNKVFGYYIEVTKSYYDMVPAD------YIRKQTLANAERYITPELKEMEN 514 Query: 546 RITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPI 605 +I +A+ + +E + F + + ++ + + + IA +D +LA A E +Y RP+ Sbjct: 515 KILSASERLVALEYQIFADIRDTVVGHIKRVQQTASAIAELDCLCSLADAAIENHYVRPV 574 Query: 606 IDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKST 665 ++ ++++GRHP+VEK L + F+ ND L D + ++TGPNM GKST Sbjct: 575 LNEGQRIVIQNGRHPVVEKVLPPHT---FVPNDTLL----DNGEDMVCIITGPNMAGKST 627 Query: 666 FLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILN 725 ++RQ ALIV+MAQ+GS+VPA A IGIVD++F+RVG++D+L++G+STFMVEM E A IL+ Sbjct: 628 YMRQVALIVLMAQIGSFVPADMAEIGIVDRIFTRVGASDDLSTGQSTFMVEMTEVAHILH 687 Query: 726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLK 783 AT +S +ILDEIGRGT+T DGLSIAWA IEY+ + R + L ATH+HELT+L L Sbjct: 688 NATAKSLLILDEIGRGTSTFDGLSIAWAVIEYVADPGRLGAKTLFATHYHELTELEGRLT 747 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY 843 N + V + + +IFL K++ G + S+GIQV +LAGLP VI RA +IL Sbjct: 748 GVKNYYISVREHGDDVIFLRKIMRGGSGRSFGIQVARLAGLPQDVIDRAREILDILNA-S 806 Query: 844 HHNQKDMRLYY------PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAV 897 N+K + P+++ K+ + S + IK L+++ M+P+ AL L+ + Sbjct: 807 DINKKSISGNILGVKDRPKLKLKQQMDIFSYKIDGIMAYIKGLDVNSMTPIEALNVLHDI 866 Query: 898 KAWTLEKY 905 ++ L+ Y Sbjct: 867 QSQVLDIY 874 >gi|291280540|ref|YP_003497375.1| DNA mismatch repair ATPase MutS [Deferribacter desulfuricans SSM1] gi|290755242|dbj|BAI81619.1| DNA mismatch repair ATPase MutS [Deferribacter desulfuricans SSM1] Length = 851 Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust. Identities = 328/880 (37%), Positives = 510/880 (57%), Gaps = 48/880 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY E+K PD ++F+RMGDFYE+F DDA+ AS+ LGI LT R K+ IPMCG Sbjct: 9 TPMMKQYYEVKEKYPDCIIFFRMGDFYEMFDDDAIDASKILGIALTSRNKNDDNPIPMCG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+ Y+ KLI G ++AICEQ+E P AK +V+R V+R+VTP T+ E++ + Sbjct: 69 VPYHSYQTYLDKLISAGKKVAICEQLEDPATAK-----GIVKRGVIRVVTPATVIEEESI 123 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 D N+L++ + IA ID STG IS + + + S I + DP+EII K+L+ Sbjct: 124 KSADFNFLLSFYYTNNTYFIALIDTSTGDLFISETKN--IFSVIDKWDPKEII-GNKDLN 180 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAIS 265 + NV N + I D++NI + + G ++ T A I Sbjct: 181 ----------IKNVNFQLLNYSTFEKTVKMTIFDHFNIQSFTSIG----IDNTNNAIPIY 226 Query: 266 YIKK--TQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 + K ++ T+ P ++ L++DS A + LE+++ GS + +L + +++ Sbjct: 227 FALKYLDSLLLDVTLKKPVYLNLNDELYLDSIAVNTLELVKNQRDGSVKNTLFQVLNFCK 286 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G RL + PL D KI R + + FI + L N IQ +LK+ D+ R SRL Sbjct: 287 TALGERLLKFTLLRPLRDLNKIKYRQNVVEAFIFDQELKNNIQNLLKNVYDIERIASRLS 346 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKTLSSMLS 440 R +D+ +++ I+ I + ++ P +E + L+ + + ++K++ Sbjct: 347 AKRANARDLVWLKNSIKVLPEIKAYLINSNDPILKEFGEQFDNLEDIYELIDKSIV---- 402 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 DD P GG ++ G + +DE + ++D S ++A ++ K E+T I NLK+K+N G Sbjct: 403 DDPPLQITAGGIIKTGFNNHIDELKKVKDDSTTLLARIEQKEREKTGITNLKVKYNKVFG 462 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IEV+ S S + D FI +QT+ N RF T EL +LE +I A + +E + Sbjct: 463 YYIEVSKSHLS------KVPDYFIRKQTLVNAERFITDELKELEVKILEAESKLTELEYQ 516 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F + + ++ E + + + IA++D+ ++ + A Y +P I++S + +GRHP Sbjct: 517 QFIEIREKVEKEIERIRSQANKIALLDMLLSFSEAAIRYEYTKPHINDSNEIKIIEGRHP 576 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 ++E+T+ + PF+ ND ++ D+ L ++TGPNM GKST+LR ALI I+A G Sbjct: 577 VIEQTMNE----PFVPNDIFINTEKDR----LLIITGPNMAGKSTYLRMTALITILAHTG 628 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA A+IG+VD++F+R+G++DNLA G STFMVEM+ETA+ILN AT +S +ILDEIGR Sbjct: 629 SFVPAKEANIGLVDRIFTRIGASDNLAKGESTFMVEMVETANILNNATEKSLIILDEIGR 688 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GT+T DGLSIAWA EY+ + + + L ATH+HELTD++ + N T++V + N+ +I Sbjct: 689 GTSTYDGLSIAWAVAEYISKYIKAKTLFATHYHELTDIALTTYGVKNYTIEVREWNDEVI 748 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP-EIQT 859 FL K+IPG AD SYGI V KLAGLP VI+RA +IL T EK +L E+ Sbjct: 749 FLRKIIPGSADRSYGIHVAKLAGLPEEVINRANEILATLEKNEFSIDGSPKLAKKSEVVI 808 Query: 860 KESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 +E L D +E+++ ++++ M+PL AL TL +K Sbjct: 809 REPV--LIFEDHPVIEELRNIDINNMTPLEALNTLAKLKG 846 >gi|291538969|emb|CBL12080.1| DNA mismatch repair protein MutS [Roseburia intestinalis XB6B4] Length = 892 Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust. Identities = 326/897 (36%), Positives = 528/897 (58%), Gaps = 51/897 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD--IPM 83 TPMM+QY++ K D ++FYR+GDFYE+FFDDA++ S+ L +TLT GK G + PM Sbjct: 16 TPMMQQYLKTKEEYKDCILFYRLGDFYEMFFDDAIVVSKELELTLT--GKSCGAEERAPM 73 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVP H Y+ KL+ GH++AICEQ+E P AK LV+R V+R+VTPGT T+ Q Sbjct: 74 CGVPYHAVEGYLNKLVANGHKVAICEQVEDPKLAK-----GLVKREVIRIVTPGTNTDMQ 128 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREIIFSEK 202 L + +NY+M + + ++ I+ DISTG + ++ + +R LI +I + P EII +E Sbjct: 129 ALDESKNNYIMCIVYLADKYGISLADISTGDYFVTEVDTERKLIDEINKFAPSEIICNES 188 Query: 203 -ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAA 260 +S + + LG + +F +E+ + +++ + +++ G S AA Sbjct: 189 FYMSGVDLSDMKNRLGIAVYSLEAWYFSDETAENTLKEHFKVQSLEGLGLSDYACGTIAA 248 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTID 319 A + Y+ +TQ + + + IDS+ R NLE++ TL +++ SLL +D Sbjct: 249 GALLRYLYETQKNDLGNLSAIHPYSTGKYMIIDSSTRRNLELVETLREKQKRGSLLWVLD 308 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G R + PL D T+I R ++I + I +++ L D+ R ++ Sbjct: 309 KTKTAMGARTLRAYVEQPLIDKTEIELRQEAIGELNDHVITREELREYLNPIYDLERLIT 368 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKND--LPEELRGAVEKLKKLPQSLEKTLSS 437 R+ P+D+ ++ I I +L + D L + ++ ++ +++L +++++ Sbjct: 369 RVTYRTANPRDLIAFKNSISMLPPIKSLLDEFDGALLKNIQNDIDAMEELCSLVDRSIM- 427 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 ++ P R+GG +++G + +D+ R+ + + K +A L+ K E+T IKNLKIK+N Sbjct: 428 ---EEPPISVREGGLIKEGYNEDVDKYRNAKTEGKTWLAELEAKEREKTGIKNLKIKYNK 484 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY++EVT+S KDL D F +QT++N R+ T EL +LE+ I A + + + Sbjct: 485 VFGYYLEVTNSY-----KDL-VPDYFTRKQTLANAERYITPELKELEDMILGAEDKLVSL 538 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + F + N I E+ + ++ IA +D+ ++LA++A + NYCRP + NS +K G Sbjct: 539 EYDLFCEVRNKIAEEVVRIQRTAKAIANLDVFVSLAVVADQNNYCRPKMTNSGVIDIKGG 598 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VEK + ++ FI ND L D + ++ ++TGPNM GKST++RQ ALIV+MA Sbjct: 599 RHPVVEKMI---TNDMFIDNDTYL----DNGNNRIAIITGPNMAGKSTYMRQAALIVLMA 651 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+GS+VPA+ A I IVD++F+RVG++D+LASG+STFMVEM E A+IL AT+ S ++LDE Sbjct: 652 QIGSFVPATSAKISIVDRIFTRVGASDDLASGQSTFMVEMNEVANILRNATSNSLLVLDE 711 Query: 738 IGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 IGRGT+T DGLSIAWA +E++ + L ATH+HELT+L L HN + V + Sbjct: 712 IGRGTSTFDGLSIAWAVVEHISNPRLLGAKTLFATHYHELTELEGKLNNVHNYCIAVKEK 771 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM--RLY 853 + I+FL K++ G AD SYGIQV KLAG+P++VI RA +I+ E+L ++ + + Sbjct: 772 GDDIVFLRKIVQGGADKSYGIQVAKLAGVPDSVIERAKEIV---EELSANDITSVTKNIT 828 Query: 854 YPEIQTKESKNNLSKND----KLF--------VEKIKCLNLDEMSPLTALKTLYAVK 898 TK+ K L + D LF +E++K +++ ++P+ AL LY ++ Sbjct: 829 PATAGTKKKKERLDEVDLTQMSLFDTVKDDDILEELKTIDVGNLTPIEALNKLYELQ 885 >gi|320101926|ref|YP_004177517.1| DNA mismatch repair protein MutS [Isosphaera pallida ATCC 43644] gi|319749208|gb|ADV60968.1| DNA mismatch repair protein MutS [Isosphaera pallida ATCC 43644] Length = 896 Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust. Identities = 311/829 (37%), Positives = 480/829 (57%), Gaps = 34/829 (4%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 + + +TPMMRQY E+K+ +P++L+ +RMGDFYE+F DDA A LG+T+T R K G Sbjct: 2 DAIADATPMMRQYRELKARDPEALLLFRMGDFYEMFGDDAERAGELLGLTVTSRDK--GP 59 Query: 80 D-IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + +PM G P Y+ KL+ G R A+CEQ+E P AK LV+R +VR+VTPGT Sbjct: 60 NAVPMAGFPHPALESYLAKLVAAGVRAAVCEQVEDPKTAK-----GLVKREIVRIVTPGT 114 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREII 198 LT++ LL P SN+L AV ++ + +AW+++ST F +++++ + +I R+ P E++ Sbjct: 115 LTDEALLDPRASNHLAAVVEVKGKLGLAWVELSTARFTLTSTHRLEIQDEIARLAPAELL 174 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESR--IADYYNITTVDTFG-SFSQV 255 +E + ++L + + P +D ++R + + + ++T+ FG + + Sbjct: 175 IAETAVDAPWVRALRAAAPGMTIT-PRPSWDFLADQARQLLCEQFRVSTLSGFGVNDDAI 233 Query: 256 EKTAAAAAISYIKKTQ---MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSRE 311 E AA A ++Y+++TQ +++ + RE++ L +D R LE+ RTL G R+ Sbjct: 234 EIQAAGALLAYLRETQKSALLHLRRLHVHRREEV---LGLDETTRRGLELTRTLREGKRD 290 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 SLL ID ++T G RL AE + +PLT+ + R D++ +++ L +++ L + Sbjct: 291 GSLLHAIDLTVTPMGARLLAEWLNAPLTNLDALRRRHDAVGDLVEDAALREELRRGLATI 350 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSL 431 D+ R R+ GR P+D+ + + + + L L LR +L P+ + Sbjct: 351 QDLERLAGRMGTGRATPRDLVGLARSL-AALPTLKARLTARRSAALRQLEAQLDLCPE-I 408 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + + + DD P ++GG +RDG LDE R + K IA Q + T I +L Sbjct: 409 RQAIDETMVDDPPLALKEGGLIRDGFHPLLDELRDIASGGKSWIARFQAEQIRRTGIPSL 468 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 K+ N GY+IEVT S + D FI +QT+ N R+ T EL + E+R+ A Sbjct: 469 KVGFNKVFGYYIEVTHQHQSKVPPD------FIRKQTVKNAERYITAELKEYEDRVLRAE 522 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + A +E E F L + + ++ L + +A +D+ ALA LA + Y RP + + Sbjct: 523 DQARELEYELFIQLRDRVAAEAPRLVQVGEALAQLDVLAALAELAARRGYRRPELVSEPI 582 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 + GRHP+++ + + FI ND DL +SG + LLTGPNM GKST++RQ A Sbjct: 583 LKIVAGRHPVLDILMPEGR---FIPNDLDLG----GDSGTILLLTGPNMAGKSTYIRQAA 635 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 ++ I+AQMGS++P A IG+VD++F+RVG++D L G+STFMVEM ETA+IL+ AT +S Sbjct: 636 VLCILAQMGSFLPVKSATIGLVDRIFARVGASDELGRGQSTFMVEMTETANILHNATARS 695 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 VILDEIGRGT+T DG+S+AWA EYLH+ CR L ATH+HEL DL NA + Sbjct: 696 LVILDEIGRGTSTFDGVSLAWAIAEYLHDVIGCRALFATHYHELVDLETVKPGLRNANVS 755 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 V + N I+FLH+++PG AD SYGI V +LAG+PN V+ RA IL E Sbjct: 756 VLEQNGEIVFLHRIVPGGADQSYGIHVARLAGVPNPVLERAKAILAQLE 804 >gi|225567942|ref|ZP_03776967.1| hypothetical protein CLOHYLEM_04015 [Clostridium hylemonae DSM 15053] gi|225163230|gb|EEG75849.1| hypothetical protein CLOHYLEM_04015 [Clostridium hylemonae DSM 15053] Length = 875 Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust. Identities = 323/894 (36%), Positives = 516/894 (57%), Gaps = 49/894 (5%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY++ K PD ++FYR+GDFYE+FF+DAL ASR L ITLT + L + PMCG+P Sbjct: 1 MMQQYVDTKKEYPDCILFYRLGDFYEMFFEDALTASRELEITLTGKNCGLEERAPMCGIP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H + Y+ +L+ G+++AICEQ+E P AK LVRR VVR+VTPGT + Q L Sbjct: 61 YHAVDGYLNRLVSKGYKVAICEQMEDPAAAK-----GLVRREVVRIVTPGTNLDTQALDE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEK-ELS 205 T +NY+M V I + ++ D++TG F ++L +I + P E+I +E +S Sbjct: 116 TKNNYIMCVVYIADRYGLSVADVTTGDYFVTELETSEKLFDEIYKFMPSELICNEAFYMS 175 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAI 264 + L E LG A +FD ++ + + +++ ++++++ G A A + Sbjct: 176 GMDMDLLKERLGIAIYALDAWYFDDALCQRTLKEHFKVSSMESLGLGDYDCGVIGAGALL 235 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT 323 +Y+ +TQ + + + +DS+ R NLE+ TL +++ SLL +D + T Sbjct: 236 TYLTETQKTDLTHLSKLTGYAAGKYMMLDSSTRRNLELCETLREKQKRGSLLWVLDKTKT 295 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G R + I PL D +I RLD++ F + I I++ L D+ R + ++ Sbjct: 296 AMGARTLRKYIEQPLIDKEEIERRLDAVEEFKEGAIAREEIREYLSPVYDLERLVCKITY 355 Query: 384 GRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 P+D+ + + +I + +K+ L LRG + L L + L ++ + + Sbjct: 356 KSANPRDLTAFKSSLAMLPHIRCILGDMKSPL---LRGLFDSLDTL-EDLCSLITDAILE 411 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + P ++GG +R+G + +D R+ + K +A L+ + E+T IKNL+I+ N GY Sbjct: 412 EPPIAMKEGGIIREGYNEEVDRLRAAKSDGKEWLAKLEEQEREKTGIKNLRIRFNKVFGY 471 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 ++EVT+S +++ D + +QT++N R+ EL +LE+ I A + +E E Sbjct: 472 YLEVTNSFKNLVP------DYYTRKQTLANAERYIIPELKELEDTILGAEDKLYALEYEL 525 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 + + +AI + + ++ +A ID+ +LA++A+ NY RP I+ +KDGRHP+ Sbjct: 526 YCQVRDAIAAEIVRIQTTAKAVAQIDVFTSLALVAERNNYVRPKINERGIIDIKDGRHPV 585 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VEK + FIAND L ND+ + ++ ++TGPNM GKST++RQ ALIV+M+Q+GS Sbjct: 586 VEKMIPNDM---FIANDTFL---NDRKN-RISVITGPNMAGKSTYMRQTALIVLMSQIGS 638 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPAS A +G+VD++F+RVG++D+LASG+STFMVEM E A+IL AT +S +ILDEIGRG Sbjct: 639 FVPASSADVGLVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATGRSLLILDEIGRG 698 Query: 742 TATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 T+T DGLSIAWA IE++ + + L ATH+HELT+L + +N + V + + I Sbjct: 699 TSTFDGLSIAWAVIEHISNSRLLGAKTLFATHYHELTELEGKIDNVNNYCIAVKEKGDDI 758 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYH--------------H 845 +FL K++ G AD SYGIQV KLAG+P+TVI RA +I+ E+L H H Sbjct: 759 VFLRKIVKGGADKSYGIQVAKLAGVPDTVIERAKEIV---EELSHADITARVKDIAVNGH 815 Query: 846 NQKDMRLYYPEIQTKE-SKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 K Y E+ + S + K+D + E IK L++ ++P+ AL TLY ++ Sbjct: 816 EAKIKTKKYDEVDLAQMSLFDTVKDDDVIAE-IKNLDVSNLTPIDALNTLYQLQ 868 >gi|291536168|emb|CBL09280.1| DNA mismatch repair protein MutS [Roseburia intestinalis M50/1] Length = 853 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 311/822 (37%), Positives = 496/822 (60%), Gaps = 34/822 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD--IPM 83 TPMM+QY++ K D ++FYR+GDFYE+FFDDA++ S+ L +TLT GK G + PM Sbjct: 24 TPMMQQYLKTKEEYKDCILFYRLGDFYEMFFDDAIVVSKELELTLT--GKSCGAEERAPM 81 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVP H Y+ KL+ GH++AICEQ+E P AK LV+R V+R+VTPGT T+ Q Sbjct: 82 CGVPYHAVEGYLNKLVANGHKVAICEQVEDPKLAK-----GLVKREVIRIVTPGTNTDMQ 136 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREIIFSEK 202 L + +NY+M + + ++ I+ DISTG + ++ + +R LI +I + P EII +E Sbjct: 137 ALDESKNNYIMCIVYLADKYGISLADISTGDYFVTEVDTERKLIDEINKFAPSEIICNES 196 Query: 203 -ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAA 260 +S + + LG + +F +E+ + +++ + +++ G S AA Sbjct: 197 FYMSGVDLSDMKNRLGIAVYSLEAWYFSDETAENTLKEHFKVQSLEGLGLSDYACGTIAA 256 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTID 319 A + Y+ +TQ + + + IDS+ R NLE++ TL +++ SLL +D Sbjct: 257 GALLRYLYETQKNDLGNLSAIHPYSTGKYMIIDSSTRRNLELVETLREKQKRGSLLWVLD 316 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G R + PL D T+I R ++I + I +++ L D+ R ++ Sbjct: 317 KTKTAMGARTLRAYVEQPLIDKTEIELRQEAIGELNDHVITREELREYLNPIYDLERLIT 376 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKND--LPEELRGAVEKLKKLPQSLEKTLSS 437 R+ P+D+ ++ I I +L + D L + ++ ++ +++L +++++ Sbjct: 377 RVTYRTANPRDLIAFKNSISMLPPIKSLLDEFDGALLKNIQNDIDAMEELCSLVDRSIM- 435 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 ++ P R+GG +++G + +D+ R+ + + K +A L+ K E+T IKNLKIK+N Sbjct: 436 ---EEPPISVREGGLIKEGYNEDVDKYRNAKTEGKTWLAELEAKEREKTGIKNLKIKYNK 492 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY++EVT+S KDL D F +QT++N R+ T EL +LE+ I A + + + Sbjct: 493 VFGYYLEVTNSY-----KDL-VPDYFTRKQTLANAERYITPELKELEDMILGAEDKLVSL 546 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + F + N I E+ + ++ IA +D+ ++LA++A + NYCRP + NS +K G Sbjct: 547 EYDLFCEVRNKIAEEVVRIQRTAKAIANLDVFVSLAVVADQNNYCRPKMTNSGVIDIKGG 606 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VEK + ++ FI ND L D + ++ ++TGPNM GKST++RQ ALIV+MA Sbjct: 607 RHPVVEKMI---TNDMFIDNDTYL----DNGNNRIAIITGPNMAGKSTYMRQAALIVLMA 659 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+GS+VPA+ A IGIVD++F+RVG++D+LASG+STFMVEM E A+IL AT+ S ++LDE Sbjct: 660 QIGSFVPATSAKIGIVDRIFTRVGASDDLASGQSTFMVEMNEVANILRNATSNSLLVLDE 719 Query: 738 IGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 IGRGT+T DGLSIAWA +E++ + L ATH+HELT+L L HN + V + Sbjct: 720 IGRGTSTFDGLSIAWAVVEHISNPRLLGAKTLFATHYHELTELEGKLNNVHNYCIAVKEK 779 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILK 837 + I+FL K++ G AD SYGIQV KLAG+P++VI RA +I++ Sbjct: 780 GDDIVFLRKIVQGGADKSYGIQVAKLAGVPDSVIERAKEIVE 821 >gi|114566506|ref|YP_753660.1| DNA mismatch repair protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318429|sp|Q0AYB5|MUTS_SYNWW RecName: Full=DNA mismatch repair protein mutS gi|114337441|gb|ABI68289.1| DNA mismatch repair protein MutS [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 859 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 334/884 (37%), Positives = 508/884 (57%), Gaps = 52/884 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY++IK D+++F+R+GDFYE+FF+DA +ASR L I LT R G IPMCG Sbjct: 5 TPMMQQYLQIKEEQQDAILFFRLGDFYEMFFEDARIASRELEIVLTARDGGAGSKIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+ ++Y+ +LI G+++AICEQ+E P EAK +V+R V R+VTPGT+ E+QLL Sbjct: 65 VPYHSVDNYLARLINRGYKVAICEQVEDPREAK-----GIVKREVTRIVTPGTIIEEQLL 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST----SNHDRLISDIMRIDPREIIFSE 201 +N+L AV IA+IDISTG F +S + R+ S+I+RI P E + + Sbjct: 120 DQAKNNFLAAVEEEPLCTGIAYIDISTGEFWLSEIAGENARSRVESEILRISPAECLLAG 179 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSIS----ESRIADYYNITTVDTFG--SFSQV 255 ++ + N+ + V+ + +S ES + + ++++FG S+S Sbjct: 180 SGSLTGSWEEEWLRQQNITL---TVWDELPLSLERAESLLLRQLQVASLESFGLKSYSAG 236 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSL 314 K AAA I+++++TQ + I + L +D +R NLE+ TL G RE SL Sbjct: 237 IK-AAARIIAFLEETQKTSLQHIKSLRCYSSDNFLEMDFYSRRNLELTATLREGKREGSL 295 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D S T G RL I PL ++ +I RLD+++ L + +L D+ Sbjct: 296 LSILDESRTAMGKRLLRRWIEQPLREAGEIEERLDAVDELKNTLSLRTELTPLLSRINDL 355 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R ++ P+D+ G++S + ++N K P R + + +LE+ Sbjct: 356 ERLGGKIGASVASPRDLL----GLKSSLAVINDIKKALQP--CRSEILQRLAAMDALEEV 409 Query: 435 LS---SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + + ++D+ P ++G ++ G +DE R L + + + + + T IKNL Sbjct: 410 FALIDASINDEAPLGIKEGELIKTGYKQEIDELRELSQEGSNWLVEFENREKQRTGIKNL 469 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 K+ N GY+IE+T S+ S+ D + +QT+ N RF + EL E +I + Sbjct: 470 KVGFNKVFGYYIEITKSNLSLAPAD------YHRKQTLVNSERFISDELKQYEEKILGSR 523 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 +E + F + A+I + + IAI+D+ LA +A + NY RP IDNS Sbjct: 524 ERLYSLEYQEFIKIREALIPYLPRVMETAHAIAILDVLQGLAEVAYQNNYIRPEIDNSGK 583 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 ++ GRHP+VEK L++ F+ ND L D++ + ++TGPNMGGKSTF+RQ A Sbjct: 584 IRIRAGRHPVVEKALREAR---FVPNDLQL----DRDKARFAIITGPNMGGKSTFMRQAA 636 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 L+V+MAQMGS++PA A IG+VDK+F+RVG++D+LA+G+STFMVEMIE A+ILN A++ S Sbjct: 637 LLVLMAQMGSFIPAEEARIGLVDKIFTRVGASDDLAAGQSTFMVEMIEVANILNNASDNS 696 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 VILDEIGRGT+T DGLSIA A EYL E +R + L ATH+H+LT L++ L N ++ Sbjct: 697 LVILDEIGRGTSTYDGLSIAQAVSEYLLENSRSKVLFATHYHQLTRLAEKLPGIINLSVS 756 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR 851 V ++ ++FL KV+PG AD SYG+ V +LAGLP +I RA DIL+ EK KD R Sbjct: 757 VKETGNTVVFLKKVLPGKADKSYGLHVARLAGLPEKLIIRAEDILQGLEK-----NKDSR 811 Query: 852 LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 +Q L + V+++K L++D++SP AL+ LY Sbjct: 812 PAPTLLQPL-----LFSDSHPVVDELKQLHIDDLSPREALQLLY 850 >gi|315924593|ref|ZP_07920812.1| DNA mismatch repair protein MutS [Pseudoramibacter alactolyticus ATCC 23263] gi|315622123|gb|EFV02085.1| DNA mismatch repair protein MutS [Pseudoramibacter alactolyticus ATCC 23263] Length = 882 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 310/894 (34%), Positives = 508/894 (56%), Gaps = 41/894 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+++ PD+++ +R+GDFYE FFDDA+ AS+ L I LT + L + PMCG Sbjct: 4 TPMMQQYLKMHEKVPDTIMLFRVGDFYETFFDDAITASKALEIALTGKRCGLDEPAPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A YI KL++ G+++A+CEQ+E P AK +V+R+++++V+PGT+TE L+ Sbjct: 64 VPHHAAEPYIAKLVEKGYKVAVCEQMEDPAAAK-----GIVKRDIIKVVSPGTITEGGLI 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS----TSNHDRLISDIMRIDPREIIFSE 201 +NYL ++ R + +A++D+STG F + T++ L++++ +I+P EII + Sbjct: 119 QAKKNNYLASIFSDRRVFGLAYLDVSTGAFYATELPFTADSGELVNELGKIEPSEIIVNP 178 Query: 202 KELSHAEYKSLFET-LGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 + ET G + ++ + E I D + + +D+ G T A Sbjct: 179 MLYKQSALIQNLETRFGCMVGLSAAAHYEKAACERVIEDQFKVFALDSLGLKDHEAATRA 238 Query: 261 AAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTI 318 A A+ +Y+ ++Q I + I++ + +D + R NLE+ TL G + SLL + Sbjct: 239 AGALLAYVAESQKKVLGHINHLAYYRIEAYMLLDLSTRRNLELTETLRHGDKRGSLLWVL 298 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D + T GGRL + + +PL + KI R + + NP + ++ +L D+ R Sbjct: 299 DQTATAMGGRLLRQWVEAPLINREKIEIRQNLVAELAANPGALPELKTLLTKIYDLERIC 358 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 ++ G PKD+ ++ + + + L ++ + +L+ + L Q + K + + Sbjct: 359 GKISFGTVNPKDMLSLKQSL-AMLPQLKAWINSVAAPDLQSRYGEADDL-QDIFKLIDAG 416 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 ++DD P RDGG ++ G +A +D R + K I L+ E+T IK+LK+K+N Sbjct: 417 IADDAPFVLRDGGVIKTGYNAEIDRYREAHTKGKDWIRDLESAEREKTGIKSLKVKYNKV 476 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GYFIEVT ++ S++ +D +I +QT+SN+ RF T EL +E +I + +E Sbjct: 477 FGYFIEVTKANLSLVPED------YIRKQTLSNVERFYTPELKSMETQILGSEERLAQLE 530 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F + I+ Q+ + +Q +A +D +LA + E++Y RP I ++GR Sbjct: 531 YQLFTDIRETIMAQTRRIQQRAQDVAQLDALYSLAAVGVERHYVRPEIAEDGVIAFQNGR 590 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+ E ++ + F+AN+C L D+ ++ L+TGPNM GKST++RQ A++ +MAQ Sbjct: 591 HPVAEAIME---TGTFVANNCAL----DEGENRMMLITGPNMAGKSTYIRQVAILTLMAQ 643 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA AHIG+VD++F+R+G++D+L +G+STFMVEM E ++IL AT S VILDEI Sbjct: 644 IGSFVPADSAHIGVVDRIFTRIGASDDLTTGQSTFMVEMSEVSNILKNATRHSLVILDEI 703 Query: 739 GRGTATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 GRGT+T DG+SIAWA +EYL T + L ATH+HELT+L N ++ + ++ Sbjct: 704 GRGTSTFDGISIAWAVVEYLSNPLTIGAKTLFATHYHELTELEGVKPGIKNFSIALKETK 763 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF---EKLYHHNQKDMRL- 852 +G++FL K+ G AD SYGI+V +LAG P V +RA DIL E Y D Sbjct: 764 DGVVFLRKIKRGAADQSYGIEVAQLAGFPKIVTARAKDILAELNKGESAYRAGVLDGERA 823 Query: 853 --------YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +Y E+ + + L N++ +E +K L +D M+PL A+ L +K Sbjct: 824 AALDNQVSFYSEMLEQAKERMLDSNEQAALESLKDLEIDSMTPLEAMNALNDLK 877 >gi|302391923|ref|YP_003827743.1| DNA mismatch repair protein MutS [Acetohalobium arabaticum DSM 5501] gi|302204000|gb|ADL12678.1| DNA mismatch repair protein MutS [Acetohalobium arabaticum DSM 5501] Length = 893 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 321/912 (35%), Positives = 523/912 (57%), Gaps = 48/912 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TPMM+QY IK D+++ +R+GDFYE+F DDA LA+R L +TLT R K GK P Sbjct: 3 KELTPMMQQYFSIKDEYDDAILLFRLGDFYEMFADDAELAARELELTLTSRNKGKGKKTP 62 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M G+P H+A YI LI G+R+AICEQ+E P E LV+R VVR++TPGT+ ++ Sbjct: 63 MAGIPYHSAESYIATLIDKGYRVAICEQVEDPSETN-----GLVKREVVRVITPGTVIDN 117 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST----SNHDRLISDIMRIDPREII 198 ++L ++NYL AV + IA IDISTG F + LI ++ RI+P E + Sbjct: 118 EMLDDKNNNYLSAVVANEEGFGIATIDISTGDFSTTELTGEEAQSNLIDELARINPAECL 177 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEK 257 E + + + + F++S + + D++ + ++D FG + Sbjct: 178 VDTNLYEKTEVITYINQQLDPIINEIKERFNYSQAYDLLIDHFEVNSLDGFGCEDLKFAV 237 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQS 313 TAA A + ++ +TQ K T+G+ + ST + +D+ R NLE+ +T+ S + S Sbjct: 238 TAAGAVLDFLIETQ---KRTLGHLNQLTTYSTKDYMTLDANTRRNLELTKTIRDQSYKGS 294 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D ++T GGR + + PL D IN RLD++ N L ++ L D Sbjct: 295 LLWVLDQTVTAMGGRKLQKWLEQPLLDVEGINNRLDAVGELKDNIFLKEELKDNLTEVYD 354 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R +S++ G +D+ ++ I + I L + + +L+ A +KL L + + + Sbjct: 355 LERLMSKITYGSANARDLIALKTSIANLPAIKELLTQFE-SSKLKSAADKLDTL-EDVHE 412 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + S + ++ PT +G ++ G D LDE R ++ K IA+L+ + E T IK+LK+ Sbjct: 413 LIESSIKEEPPTTVTEGDIIKTGYDEELDEFRQAMNEGKDWIANLEKEEKERTGIKSLKV 472 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GY+IEVT ++ ++ D + +QT+SN R+ T EL + E++I A Sbjct: 473 GFNKVHGYYIEVTKANLDLVP------DNYERKQTLSNSERYITPELKEKESKILGAEEK 526 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 ++ +E + F + + +++E + + ++A +D+ +LA +A NYC P ++ S Sbjct: 527 SVELEYQLFTEIREKVAQETERVQKVADIVAQLDVLASLAEVAINNNYCHPEVNASDVID 586 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 ++DGRHP+VE+ L+++S F+ ND + C D+ ++TGPNM GKST++RQ AL+ Sbjct: 587 IEDGRHPVVEEMLEEES---FVPNDSYIDCDQDR----FLIITGPNMSGKSTYMRQVALM 639 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 V+M+Q+GS++PA A IGIVD++F+RVG++D+L +G+STFMVEM E A+ILN AT S V Sbjct: 640 VLMSQIGSFIPADEAKIGIVDRIFTRVGASDDLTTGQSTFMVEMNEVANILNNATQNSLV 699 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQ 791 ILDE+GRGT+T DGLSIAWA EY+ + + + L ATH+HELT+L L N + Sbjct: 700 ILDEVGRGTSTYDGLSIAWAVTEYISDQSNIGAKSLFATHYHELTELESKLPGVKNYNVA 759 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE-KLYHHNQKDM 850 V + I FL K++PG A+ SYGI+V K AG+P +VI RA ++L+ E ++ ++ Q + Sbjct: 760 VKEEGSDITFLRKIVPGKANDSYGIEVAKRAGVPKSVIDRANEVLEKLETEIDNYEQINN 819 Query: 851 RLYYPEIQTKE----SKNNLSKNDKL---------FVEKIKCLNLDEMSPLTALKTLYAV 897 L ++ + S++ L + ++L ++K+ L++ M+PL A+ L+ + Sbjct: 820 SLESEKVAEAKAEITSESELQQQNQLALFAAQNSELIQKLGELDIMSMTPLEAMNKLHQL 879 Query: 898 KAWTLEKYSTDE 909 + E+ + E Sbjct: 880 QQEAREELKSQE 891 >gi|254479232|ref|ZP_05092577.1| DNA mismatch repair protein MutS [Carboxydibrachium pacificum DSM 12653] gi|214034833|gb|EEB75562.1| DNA mismatch repair protein MutS [Carboxydibrachium pacificum DSM 12653] Length = 866 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 333/898 (37%), Positives = 515/898 (57%), Gaps = 67/898 (7%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S TPMM QY++IK D+++F+R+GDFYE+F++DA +A++ L I LT R + PM Sbjct: 2 SVTPMMEQYLKIKEKYKDAILFFRLGDFYEMFYEDAEIAAKELEIALTGRDAGTEERAPM 61 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H A+ YI KL+K G+++AICEQ+E P +AK LV+R+VVR+ TPGT+ + Sbjct: 62 AGVPYHAADFYIDKLVKKGYKVAICEQLEDPSKAK-----GLVKRDVVRIYTPGTIINPE 116 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSN---HDRLISDIMRIDPREIIF 199 + +NYL++V R + + I +D++TG ++ N R+ +I + P EII Sbjct: 117 SMDEKSNNYLVSVYREKDNYGICAVDVTTGELYATEIKNCKDGKRIYDEIAKYSPSEIIS 176 Query: 200 SEKELSHAEYKSLFETLGNVAV--AQPNVF----------FDHSISESRIADYYNITTVD 247 +E+ L + +Y +F+ N AV +P + FD + E + D + Sbjct: 177 NEEFLKNNKYIKVFKN-NNCAVNAYKPLNYEASSELIEKQFDKKVEELELED--KKFVIH 233 Query: 248 TFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT-L 306 + G A +SY+K+ Q + I S + +DS A NLEIL + Sbjct: 234 SLG-----------ALLSYLKELQKTSLKHINKLTLYQDNSYMGLDSNAIRNLEILESNR 282 Query: 307 SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK 366 + S++ SLL +D ++T GGRL + + PL D +I RLD++ N +++ Sbjct: 283 NKSKKGSLLGVLDRTVTPMGGRLLKKWLEEPLIDKDEIEKRLDAVEELFNNYRERIELKE 342 Query: 367 ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK 426 +L D+ R S++ PKD I+ +++ I N+ K L+ EKL Sbjct: 343 LLNKVYDLERLASKIVYQSVTPKDFISIKLSLQNLPKIKNILSKFS-SRLLKEIYEKLDV 401 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 L Q + + + + DD ++G ++DG + +D+ R + K IA+L+ + E+T Sbjct: 402 L-QDVYELIDKSIKDDPSNQLKEGNIIKDGYNEMVDKLRKASTEGKNWIANLEAEEREKT 460 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 IKNL+I +N GY+IEVT S+ + DR+I +QT++N R+ T EL ++E Sbjct: 461 GIKNLRIGYNKVFGYYIEVTKSNIP------QVPDRYIRKQTLANAERYVTPELKEIEET 514 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 I A + +E E F + + Q + N ++ IAIID+ I+ A +A+ Y +PI+ Sbjct: 515 ILGAEEKLIELEYELFNEIREKVELQIVRIQNTAKYIAIIDVLISFAEVAETNKYVKPIV 574 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 D ++K+GRHP+VE S + F+AND D+ N + ++TGPNM GKST+ Sbjct: 575 DYEDRIVIKEGRHPVVETI----SDEGFVANDIDIGPEN-----PIMIITGPNMAGKSTY 625 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ ALIV+MAQ+G +VPASYA IGIVDK+F+RVG++D++ +G+STFMVEM E A+IL+ Sbjct: 626 MRQVALIVLMAQVGCFVPASYARIGIVDKIFTRVGASDDIFAGQSTFMVEMSEVANILHS 685 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT++S +ILDE+GRGT+T DG+SIA A IEY+HE + + L ATH+HELT L L+ Sbjct: 686 ATSKSLIILDEVGRGTSTYDGMSIAQAVIEYIHEKIKAKTLFATHYHELTKLEGKLRGVR 745 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN 846 N + V + + IIFLHK++PG +D SYGIQV KLAGLP ++I RA +IL+ EK Sbjct: 746 NFNVSVEEREDDIIFLHKIVPGGSDRSYGIQVSKLAGLPYSIIERAKEILEALEK----- 800 Query: 847 QKDMRLYYPEIQTKESKNNLSKNDKL------FVEKIKCLNLDEMSPLTALKTLYAVK 898 K ++ E++ S+ ++ D +E+I + D M+PL AL LY +K Sbjct: 801 DKAVK---NELEEAVSQFAFTQMDIFSSAKDALIEEIANCDPDNMTPLQALIYLYKLK 855 >gi|253577912|ref|ZP_04855184.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850230|gb|EES78188.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 874 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 322/888 (36%), Positives = 515/888 (57%), Gaps = 43/888 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM++Y + K D ++FYR+GDFYE+FFDDALL +R L ITLT + L + PMCG Sbjct: 2 SPMMQEYCKTKEQYKDCILFYRLGDFYEMFFDDALLVTRELEITLTGKDCGLEERAPMCG 61 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A YI +LI+ GH++AICEQ+E P +AK LV+R VVR+VTPGT + L Sbjct: 62 VPYHAAETYINRLIERGHKVAICEQVEDPKKAK-----GLVKREVVRIVTPGTTLDAAAL 116 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEK-E 203 T +NYLM++ + + A DI+TG F +L+ +I + P EII ++ Sbjct: 117 DETKNNYLMSIVSMEEHFGCAIADITTGDCFLTEVDKPQKLLDEINKFVPAEIICNDSFY 176 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAAAA 262 +S+ + L LG + + +FD + + D++++ +++ G AA A Sbjct: 177 MSNIDTDDLQNRLGICVFSLDSWYFDDELCRRTLKDHFHVGSLEGLGVGDYDCGIIAAGA 236 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYS 321 Y+K+TQ + + + IDS++R NLE++ TL +++ SLL +D + Sbjct: 237 LFLYLKETQKTALSHMTTIRPYAAEKYMLIDSSSRRNLELVETLREKQKRGSLLWVLDKT 296 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G R + PL D +I RL+++ +N +L + I++ L D+ R +SR+ Sbjct: 297 KTAMGARTLRSYVEQPLIDRDEIEQRLEALEELNKNGMLRDEIREYLGPVYDLERLISRI 356 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT---LSSM 438 P+D+ S + +L ++K L E ++K+ + SLE + Sbjct: 357 SYKSANPRDLI----AFASSLEMLP-YIKQVLKEFKTPLLQKIYEDMDSLEDVTDLIKRA 411 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + +D P ++DGG +++G + +D+ R R K+ ++ L+ K E T IK +KIK+N Sbjct: 412 IVEDPPLAQKDGGIIKEGYNEDVDKFRRSRTDGKKWLSELEAKERERTGIKTMKIKYNRV 471 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY +E+T++ KDL D +I +QT++N R+ T EL +LE+ I A + +E Sbjct: 472 FGYSLEITNTF-----KDL-VPDNYIRKQTLTNAERYITQELKELEDLILGAEDKLYALE 525 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 E F + +A+ ++ + ++ +A +D+ +LA++A+ ++ RP + + +K+GR Sbjct: 526 YELFCDVRDAVGKEVMRIQKTAKAVAALDVFASLALVAERNHFVRPKTNTTGVIDIKNGR 585 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ ++ FIAND L D + ++ ++TGPNM GKST++RQ ALIV+MAQ Sbjct: 586 HPVVEQMIENDM---FIANDTYL----DNHKKRVSIITGPNMAGKSTYMRQTALIVLMAQ 638 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA A+IGIVD++F+RVG++D+LASG+STFMVEM E A+IL AT +S +ILDEI Sbjct: 639 IGSFVPAEKANIGIVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATARSLLILDEI 698 Query: 739 GRGTATLDGLSIAWATIEYLHETNRC--RGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 GRGT+T DGL+IAWA IE++ T C + L ATH+HELT+L + +N + V + Sbjct: 699 GRGTSTFDGLAIAWAVIEHISNTKLCGAKTLFATHYHELTELEGKIPGVNNYCIAVKEKG 758 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA---------YDILKTFEKLYHHNQ 847 + I+FL K++ G AD SYGIQV KLAG+P++VI RA DI + L + Sbjct: 759 DDIVFLRKIVQGGADKSYGIQVAKLAGVPDSVIQRAKELVEELSDADITAAVKDLTSAKK 818 Query: 848 KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 K + Y ++ + + D +++IK L++ M+P+ A+ TLY Sbjct: 819 K--KPVYDQMDMAQMSLFDTVKDNDIIDEIKGLDMGNMTPIEAMNTLY 864 >gi|20807804|ref|NP_622975.1| DNA mismatch repair protein [Thermoanaerobacter tengcongensis MB4] gi|44888228|sp|Q8RA71|MUTS_THETN RecName: Full=DNA mismatch repair protein mutS gi|20516362|gb|AAM24579.1| MutS-like ATPases involved in mismatch repair, family 2 [Thermoanaerobacter tengcongensis MB4] Length = 869 Score = 549 bits (1415), Expect = e-154, Method: Compositional matrix adjust. Identities = 332/898 (36%), Positives = 513/898 (57%), Gaps = 67/898 (7%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S TPMM QY++IK D+++F+R+GDFYE+F++DA +A++ L I LT R + PM Sbjct: 5 SVTPMMEQYLKIKEKYKDAILFFRLGDFYEMFYEDAEIAAKELEIALTGRDAGTEERAPM 64 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H A+ YI KL+K G+++AICEQ+E P +AK LV+R+VVR+ TPGT+ + Sbjct: 65 AGVPYHAADFYIDKLVKKGYKVAICEQLEDPSKAK-----GLVKRDVVRIYTPGTIINPE 119 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS----TSNHDRLISDIMRIDPREIIF 199 + +NYL++V R + + I +D++TG + N R+ +I + P EII Sbjct: 120 SMDEKSNNYLVSVYREKDNYGICAVDVTTGELYATEIKNCKNGKRIYDEIAKYSPSEIIS 179 Query: 200 SEKELSHAEYKSLFETLGNVAV--AQPNVF----------FDHSISESRIADYYNITTVD 247 +E+ L + +Y +F+ N AV +P + FD + E + D + Sbjct: 180 NEEFLKNNKYIKVFKN-NNCAVNAYKPLNYEASSELIEKQFDKKVEELELED--KKFVIH 236 Query: 248 TFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT-L 306 + G A +SY+K+ Q + I S + +DS A NLEIL + Sbjct: 237 SLG-----------ALLSYLKELQKTSLKHINKLTLYQDNSYMGLDSNAIRNLEILESNR 285 Query: 307 SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK 366 + S++ SLL +D ++T GGRL + + PL D +I RLD++ N +++ Sbjct: 286 NKSKKGSLLGVLDRTVTPMGGRLLKKWLEEPLIDKDEIEKRLDAVEELFNNYRERIELKE 345 Query: 367 ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK 426 +L D+ R S++ PKD I+ +++ I N+ K L+ EKL Sbjct: 346 LLNKVYDLERLASKIVYQSVTPKDFISIKLSLQNLPKIKNILSKFS-SRLLKEIYEKLDV 404 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 L Q + + + + DD ++G ++DG + +D+ R + K IA+L+ E+T Sbjct: 405 L-QDVYELIDKSIKDDPSNQLKEGNIIKDGYNEMVDKLRKASTEGKNWIANLEADEREKT 463 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 IKNL+I +N GY+IEVT S+ + DR+I +QT++N R+ T EL ++E Sbjct: 464 GIKNLRIGYNKVFGYYIEVTKSNIP------QVPDRYIRKQTLANAERYVTPELKEIEET 517 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 I A + +E E F + + Q + N ++ IAIID+ I+ A +A+ Y +PI+ Sbjct: 518 ILGAEEKLIELEYELFNEIREKVELQIVRIQNTAKYIAIIDVLISFAEVAETNKYVKPIV 577 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 D ++K+GRHP+VE S + F+AND D+ N + ++TGPNM GKST+ Sbjct: 578 DYEDRIVIKEGRHPVVETI----SDEGFVANDIDIGPEN-----PIMIITGPNMAGKSTY 628 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ ALIV+MAQ+G +VPASYA IGIVDK+F+RVG++D++ +G+STFMVEM E A+IL+ Sbjct: 629 MRQVALIVLMAQVGCFVPASYARIGIVDKIFTRVGASDDIFAGQSTFMVEMSEVANILHS 688 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT++S +ILDE+GRGT+T DG+SIA A IEY+HE + + L ATH+HELT L L+ Sbjct: 689 ATSKSLIILDEVGRGTSTYDGMSIAQAVIEYIHEKIKAKTLFATHYHELTKLEGKLRGVR 748 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN 846 N + V + + IIFLHK++PG +D SYGIQV KLAGLP ++I RA +IL+ E+ Sbjct: 749 NFNVSVEEREDDIIFLHKIVPGGSDRSYGIQVSKLAGLPYSIIERAKEILEALER----- 803 Query: 847 QKDMRLYYPEIQTKESKNNLSKNDKL------FVEKIKCLNLDEMSPLTALKTLYAVK 898 K ++ E++ S+ ++ D +E+I + D M+PL AL LY +K Sbjct: 804 DKAVK---NELEEAVSQFAFTQIDIFSSAKDALIEEIANCDPDNMTPLQALTYLYKLK 858 >gi|167630634|ref|YP_001681133.1| DNA mismatch repair protein muts [Heliobacterium modesticaldum Ice1] gi|167593374|gb|ABZ85122.1| DNA mismatch repair protein muts [Heliobacterium modesticaldum Ice1] Length = 910 Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust. Identities = 311/826 (37%), Positives = 480/826 (58%), Gaps = 31/826 (3%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 +K+ TPMM+QY EIK+ +PD+++F+R+GDFYE+F DALLASR L ITLT R L + I Sbjct: 1 MKAVTPMMKQYQEIKNRHPDAILFFRLGDFYEMFGPDALLASRELEITLTGREAGLEERI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A YI +L++ G+++AICEQ+E P AK +V+R +VR+VTPGTL + Sbjct: 61 PMCGVPYHSAQGYISRLVEKGYKVAICEQVEDPAAAK-----GIVKREIVRVVTPGTLMD 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLIS---DIMRIDPREI- 197 +L +NYL+AVA I EW +A +D+ TG F + L++ +++R+ P+E+ Sbjct: 116 TNVLEEKSNNYLVAVAHIADEWGLAALDVFTGDFMAARWYDCDLVALQAELLRLAPKELL 175 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVE 256 ++ + E ++ G + + P + + I +N+++++ FG + Sbjct: 176 VYPAVAANFPELTDGWKKQGILVSSYPAEDLTVEQATTVIKGQFNLSSLEAFGCAHWPAA 235 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLL 315 AAA + Y++ TQ N P I + +D A R NLE+ RT+ GSR+ SLL Sbjct: 236 IVAAAINLRYVQDTQKANLPHITRLRTYRTDHFMRLDPATRRNLELTRTMREGSRKGSLL 295 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 ID ++T GGRL I PLTD I R + + + +L ++ L++ D+ Sbjct: 296 GVIDKTVTAMGGRLIKRWIEQPLTDVEAICKRQAVVAALVDDGLLRQDVRAGLRAVYDLE 355 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN-DLPEELRGAVEKLKKLPQSLEKT 434 R ++ G +D+ + + + +L+ + + E+L ++ L + + + +T Sbjct: 356 RLAGKVAYGSANGRDLIALASSLEALPTVLDKLRQGPSVLEKLASRIDALTPVARRITET 415 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L DD P RDGG +R G +DE R + K +A ++ + E T I++LK+ Sbjct: 416 LV----DDPPVSVRDGGLIRSGFHPEVDELRKIAGSGKEWLAHIEQRERERTGIRSLKVG 471 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N GYFIEV+ ++ + + D +I RQT++N R+ T EL E +I A Sbjct: 472 FNKVFGYFIEVSKANMTSVPAD------YIRRQTLANGERYITPELKTYEEKILGAEEKL 525 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 +E F L ++I L ++ +A +D+ ALA +A EQ Y P I + T + Sbjct: 526 TQLEYRLFTELRSSIEALLPQLQKTAEQVAHLDVFAALAQVAVEQGYVCPDIHDGTEIHI 585 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 + GRHP+VE L F+ ND C + L L+TGPNM GKST++RQ ALIV Sbjct: 586 QGGRHPVVEAHL---GPGVFVPNDTRF-CDGET----LLLITGPNMAGKSTYMRQVALIV 637 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++AQ+GS+VPA+ A IG+VD++F+RVG++D+LA+G+STFMVEM E A IL+ AT++S V+ Sbjct: 638 LLAQVGSFVPATAAAIGVVDRIFTRVGASDDLATGQSTFMVEMTEVAHILHHATSRSLVV 697 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDE+GRGT+T DG++IAWA E + + L ATH+HEL L ++L T+ V + Sbjct: 698 LDEVGRGTSTFDGMAIAWAVAEAIQRLG-AKSLFATHYHELVRLEETLPGVRCYTIAVRE 756 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 S + I+FLH++ PG + SYGIQV +LAGLP++VI RA +IL E Sbjct: 757 SGDDIVFLHQIRPGGVNKSYGIQVARLAGLPSSVILRAREILANLE 802 >gi|169334038|ref|ZP_02861231.1| hypothetical protein ANASTE_00431 [Anaerofustis stercorihominis DSM 17244] gi|169258755|gb|EDS72721.1| hypothetical protein ANASTE_00431 [Anaerofustis stercorihominis DSM 17244] Length = 891 Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust. Identities = 336/917 (36%), Positives = 540/917 (58%), Gaps = 63/917 (6%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + S TPMM+QY++ PD+++FYR+GDFYE+FFDDA AS+ L + LT R L + Sbjct: 1 MASLTPMMKQYLQTHEEVPDTILFYRLGDFYEMFFDDAKTASKELDLVLTGRDCGLEEKA 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A+ YI KL++ G+++AICEQ+E P AK LV+R V R+++PGT+TE Sbjct: 61 PMCGVPYHSADTYIAKLVEKGYKVAICEQVEDPKTAK-----GLVKREVQRVISPGTITE 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDR---LISDIMRIDPREI 197 ++L ++NY+M + + E+ + + DI+TG F + S S +R L+S + RI+P +I Sbjct: 116 GKMLKEGENNYIMCIYYNKLEFGVTYCDITTGEFNVLSLSGENRGNELLSLLSRINPAQI 175 Query: 198 IFSEKELSHAEYKSLFETLGNVAVA-QPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 I + + K + V + P +F H ++ I + +N+ ++ + G +++ Sbjct: 176 IVNTILFEDLDLKKNISNVTKVMLEPHPLNYFFHDKAKEYILNQFNVYSLSSIGLDNNEI 235 Query: 256 EKTAAAAAISYIKKTQ---MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSRE 311 +A A + Y+ +TQ +++ I E +D + +D + NLEI+ L + +++ Sbjct: 236 IVRSAGALLKYLDETQKRALIHINEIKINEDKD---YMHLDYNTKRNLEIVENLRTNNKK 292 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 +LL +D ++T G R + + PLT+ KI R D+I FI + +++ I LK Sbjct: 293 DTLLDVLDNTVTSMGARELKKWVLEPLTNKDKIILRQDAIKLFIDDVMILEDITSNLKYV 352 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRD--GIRSGINIL--NLFLKNDLPEELRGAVEKLKKL 427 D+ R +SRL + +D+ +++ G+ I IL L + L E+ +++L + Sbjct: 353 KDMERIISRLSLDIANGRDLLALKESIGVIPRIRILLSKLMKSSPLLSEIYTKLDELSDI 412 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 +E S + DD ++GG ++ G + +DE ++L++ S +I+A+++ E+T Sbjct: 413 YDLIE----SSIDDDCQVSLKNGGIVKLGYNEEIDELKNLKNNSAQILANIEKDEKEKTG 468 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 IKNLKIK+N GYF+EVTSS AS++ D FI +QT++N R+ T EL D+E ++ Sbjct: 469 IKNLKIKYNKVFGYFLEVTSSYASLVP------DYFIRKQTLANSERYFTEELKDIEVKL 522 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 + E + + + N I+E + + +++IA+ID I+LAI+AK+ +Y +P I Sbjct: 523 LSVEEKLKEKEYKIYLDVKNRILENIKRIQVTAKMIAVIDAVISLAIVAKKNHYVKPTIT 582 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 + + I+K+GRHP+VEK + FI ND L D ++ ++TG NM GKST++ Sbjct: 583 ENGSIIIKEGRHPVVEKITGLDN---FIHNDTLL----DNEDNRILIITGANMAGKSTYI 635 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ ALI IMAQ+GS+VPA+ A I IVD++F+RVG++D+LASG+STFMVEM E ++IL A Sbjct: 636 RQVALISIMAQIGSFVPATSASISIVDRVFTRVGASDDLASGQSTFMVEMSEVSNILKYA 695 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRF 785 T S VILDE+GRGT+T DGLSIA A IEYL + ++ + L ATH+HELT+L Sbjct: 696 TKNSLVILDEVGRGTSTFDGLSIAHAVIEYLLDKSKIGAKTLFATHYHELTELEGEQNGV 755 Query: 786 HNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAY---DILKTFEKL 842 N ++++ + + I+FL K+ G D SYGI+VGKLAGLP+ VI R+ D+L+ E+ Sbjct: 756 KNYSIRLESNGDEIVFLRKIERGGIDKSYGIEVGKLAGLPDEVIKRSMQILDVLEENEET 815 Query: 843 YHHNQKDMRLYY---------------PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSP 887 Y M + P+ + + K L+K V KIK L ++ MSP Sbjct: 816 YKSKIDAMNAHIRMNSNSFTQLSIGQNPDDEKLKEKYTLNKK---AVNKIKTLPIESMSP 872 Query: 888 LTALKTLYAVKAWTLEK 904 + + +Y +K +LEK Sbjct: 873 IEVMNFVYELK-QSLEK 888 >gi|238924112|ref|YP_002937628.1| DNA mismatch repair protein MutS [Eubacterium rectale ATCC 33656] gi|238875787|gb|ACR75494.1| DNA mismatch repair protein MutS [Eubacterium rectale ATCC 33656] Length = 874 Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust. Identities = 326/890 (36%), Positives = 518/890 (58%), Gaps = 42/890 (4%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+ Y++ K D ++FYR+GDFYE+FFDDA++ S+ L +TLT + L + PMCGVP Sbjct: 1 MMQHYLQTKEQYKDCILFYRLGDFYEMFFDDAIMVSKELELTLTGKNCGLEERAPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A+ YI +L+ GH++AICEQ+E P +AK +V+R V+R+VTPGT T+ L Sbjct: 61 FHAADSYINRLVSNGHKVAICEQMEDPKQAK-----GIVKREVIRVVTPGTNTDMASLDE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREIIFSEK-ELS 205 +NY+M++ ++ IA D++TG F + + +R L+ ++ R +P EII +E +S Sbjct: 116 AKNNYIMSIVYTEDKYGIATCDVTTGDFFTTEVDAERKLLDEVSRFNPSEIICNEAFYMS 175 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK--TAAAAA 263 + + L A + +F ++ + ++++ T++ G E AA A Sbjct: 176 GIDVDDMKNRLSITVSALDSWYFSDGLANETLLSHFHVQTINALG-LEDYESGVIAAGAL 234 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSI 322 + Y+ +TQM + I I + IDS++R NLE++ TL +++ SLL +D + Sbjct: 235 LKYLYETQMNSLDNILELHPYSIGKYMIIDSSSRRNLELVDTLREKQKRGSLLWVLDKTR 294 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G RL + PL + +I R I N I + I++ L D+ R ++R+ Sbjct: 295 TAMGARLLRTYVEQPLIEKAEIIKRQKLIEALNANEITRDEIREYLNPIYDLERLITRIT 354 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAV-EKLKKLPQSLEKTLSSMLSD 441 P+D+ RD ++ I +D+P EL + E+ +L E LSS + D Sbjct: 355 YQSANPRDLIAFRDSLKMLPPIKQQL--SDIPCELTDEINEEFDELKDIYELLLSS-IED 411 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + P +RDG ++ G + +D R + + K +A L+ E+T IKNL+IK+N GY Sbjct: 412 EPPISQRDGDIIKAGYNEEVDRLRDAKTKGKTWLAELEAGEREKTGIKNLRIKYNKVFGY 471 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 ++EVT+S ++ D ++ +QT++N R+ T EL +LE+ I A + +E E Sbjct: 472 YLEVTNSFKDMVP------DYYVRKQTLTNAERYITPELKELEDTILGAEDRLTSLEYEL 525 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 F + I + ++ IA ID+ +LA++A + NYC+P I+ S +K+GRHP+ Sbjct: 526 FRDVRKQISCNVSRIQKTARAIAQIDVFASLALVASQNNYCKPKINESGIIDIKNGRHPV 585 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VEK + ++ FI ND L D++ ++ ++TGPNM GKST++RQ ALIV+MAQ+GS Sbjct: 586 VEKMI---TNDMFIENDTYL----DQHKNRISIITGPNMAGKSTYMRQTALIVLMAQIGS 638 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA A+IGIVD++F+RVG++D+LASG+STFMVEM E A+IL AT +S +ILDEIGRG Sbjct: 639 FVPAQTANIGIVDRIFTRVGASDDLASGQSTFMVEMNEVANILRNATAKSLLILDEIGRG 698 Query: 742 TATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 T+T DGLSIAWA +E++ + L ATH+HELT+L L +N + V + + I Sbjct: 699 TSTFDGLSIAWAVVEHISNPKLLGAKTLFATHYHELTELEGKLDSVNNYCIAVKEKGDDI 758 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAY---------DILKTFEKLYHHN-QKD 849 +FL K++ G AD SYGIQV KLAGLP++VI RA DI T + + N K Sbjct: 759 VFLRKIVKGGADRSYGIQVAKLAGLPDSVIERAKEIAEQLLANDITDTVKSISVDNGHKH 818 Query: 850 MRLYYPEIQ-TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + E+ T+ S + K+D + +++++ +++ M+PL AL LY ++ Sbjct: 819 KKEHLDEVDMTQISLFDTVKDDDI-IDELRSIDIGNMTPLDALNKLYQLQ 867 >gi|260587680|ref|ZP_05853593.1| DNA mismatch repair protein MutS [Blautia hansenii DSM 20583] gi|331084031|ref|ZP_08333138.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium 6_1_63FAA] gi|260541945|gb|EEX22514.1| DNA mismatch repair protein MutS [Blautia hansenii DSM 20583] gi|330402393|gb|EGG81963.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium 6_1_63FAA] Length = 904 Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust. Identities = 323/896 (36%), Positives = 511/896 (57%), Gaps = 38/896 (4%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 N+ S +PMM+ Y++ K D ++FYR+GDFYE+FF+DA + S+ L +TLT + + + Sbjct: 22 NIASISPMMQHYVKTKEEYKDCILFYRLGDFYEMFFEDAEIVSKELELTLTGKDCGMSER 81 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 PMCG+P H A Y+ +LI G+++AICEQ+E P + K +VRR V+R+VTPGT Sbjct: 82 APMCGIPFHAAEVYLNRLISKGYKVAICEQMEDP-----KQTKGIVRREVIRVVTPGTTL 136 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREIIF 199 Q L T +NY+M+V + + IA DI+TG+F ++ + R L+ +I + P E++ Sbjct: 137 NTQALDETKNNYIMSVVYVSNRFGIAIADITTGVFMVTEVDEIRKLLDEIYKFSPAELVC 196 Query: 200 SEK-ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 +E +S E L L A N +FD + + +++++ T++ G Sbjct: 197 NEAFTMSGIEIDELKNRLNISLSALDNWYFDDDLCARTLKEHFHVGTLEGLGLKDYNCAV 256 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLK 316 AA A +Y+ +TQ + + + IDS+ R NLE+ T+ + SLL Sbjct: 257 IAAGALFTYLLETQKNSMEHLRQITPYSTDKYMLIDSSTRRNLELTETMREKVKRGSLLW 316 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D + T G R+ I PL D +IN RLD++ + + I++ L D+ R Sbjct: 317 VLDKTKTAMGARMMRSFIEQPLIDEGEINARLDAVEEINCHEMDREEIREYLSPVYDMER 376 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 +SR+ P+D+ + I S I + L EEL+ E++ L Q L + L Sbjct: 377 LISRVSYQSANPRDLISFKSSI-SMIPYIRQLLSQFQCEELQKVYEEMDDL-QDLYQLLE 434 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + + D+ P ++GG +++G +D R + + K +A L+ + E+T I+ LKIK+N Sbjct: 435 ASIVDEPPLAMKEGGIIKEGYQEDIDHFREAKTKGKVWLAELEAEEKEKTGIRTLKIKYN 494 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY++EVT+S ++ D + +QT++N R+ T L +LE+ I A + Sbjct: 495 KVFGYYLEVTNSFKDMVP------DYYTRKQTLTNAERYITPRLKELEDMILGAEDKLYA 548 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E E+F + I + E + ++ IA +D +LA++A + RP I+ +K+ Sbjct: 549 LEYEAFVSIRTKIAAEVERIQKTARAIAKLDAYASLALVASRNQFVRPKINTKGVIDIKN 608 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VEK + S+ FI ND L D ++ ++TGPNM GKST++RQ+ALIV+M Sbjct: 609 GRHPVVEKMI---SNDMFIPNDTYL----DNGKNRVAVITGPNMAGKSTYMRQSALIVLM 661 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+GS+VPA A+IGIVD++F+RVG++D+LASG+STFMVEM E A+IL AT++S +ILD Sbjct: 662 AQIGSFVPAEKANIGIVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSKSLLILD 721 Query: 737 EIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 EIGRGT+T DGLSIAWA IE++ T + L ATH+HELT+L L +N + V + Sbjct: 722 EIGRGTSTFDGLSIAWAVIEHISNTRILGAKTLFATHYHELTELEGKLAGVNNYCIAVKE 781 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA---------YDILKTFEKLYHH 845 + I+FL K++ G AD SYGIQV KLAG+PN+VI RA DI T + + Sbjct: 782 RGDDIVFLRKIVKGGADKSYGIQVAKLAGVPNSVIERAKELVEELVSADITATVKNIASE 841 Query: 846 NQKDMR---LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 N+K +++ E+ ++ + D +E++K + LDE+ P+ AL LY ++ Sbjct: 842 NKKQKTKPAVHFDEVDMEQISLFDTVKDDDVIEELKSIQLDELRPVDALNILYRLQ 897 >gi|326791330|ref|YP_004309151.1| DNA mismatch repair protein MutS [Clostridium lentocellum DSM 5427] gi|326542094|gb|ADZ83953.1| DNA mismatch repair protein MutS [Clostridium lentocellum DSM 5427] Length = 915 Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust. Identities = 311/824 (37%), Positives = 483/824 (58%), Gaps = 31/824 (3%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY+ IK NPD L+F+R+GDFYE+FF+DA SR L ITLT + L + PMCG Sbjct: 7 TPMMAQYLTIKEENPDCLLFFRLGDFYEMFFEDAKTCSRELEITLTGKDCGLEERAPMCG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI +L++ G+++AICEQIE P +AK LV+R V+R+VTPGT+ E + Sbjct: 67 VPFHSAETYISRLVEKGYKVAICEQIEDPKQAK-----GLVKRGVIRIVTPGTILEGATV 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD----RLISDIMRIDPREIIFSE 201 S +NY+ ++ + + ++ D++TG + +T D +L+ ++ + P E + SE Sbjct: 122 SEGKNNYITSIVGMEGSYGLSVCDVTTGEWLTTTIIGDQSKRKLLDELAKFAPVECLLSE 181 Query: 202 KELSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTA 259 E + T N Q P D ++++ + ++NI ++ G S VE A Sbjct: 182 TLYQDDEIREFMRTRFNCLTEQIPAHTLDTTLAQRILLKHFNILSLGGIGLSEDGVETLA 241 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTI 318 A+ ++Y+++TQ + + ++ + + +D A R NLE+ TL R + SLL + Sbjct: 242 TASLLAYLQETQKTDLSHLMTLSIYNVDAFMLLDIATRRNLELTETLREKRRKGSLLWVL 301 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D++ T G R + I PL ++ +IN RLD+ + P+L + + L D+ R + Sbjct: 302 DHTKTAMGSRYIRKCIEQPLINAEEINHRLDATKELKEAPLLRADLFEALDHIYDIERLM 361 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEKLKKLPQSLEKTLS 436 S++ G KD+ ++ + I L + P L ++ + L Q ++K L Sbjct: 362 SKVSFGTCNAKDMIALKQSLEVLPTIKGLLVDCQAPGLISLNRQLDDMSDLYQLVDKALI 421 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 ++ P R+G ++ G + +D R ++ + + ++ + E+T IKNLKIK+N Sbjct: 422 ----EEAPISVREGNMIKTGYNEEVDHLRQVKTEGASWLMEIEAREKEKTGIKNLKIKYN 477 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GYF+EVT S ++ D FI +QT+SN R+ T EL +E + A + L Sbjct: 478 KVFGYFLEVTQSYNHLVP------DYFIRKQTLSNCERYITEELKKVEEEVLGADDKLNL 531 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E + F + +A++++ L S IA +D+ +LA +A Y +P + N ++ Sbjct: 532 LEYQLFTEIRDAVLKEMPRLLTTSAQIAALDMFCSLADVADTYGYVKPEMTTGYNLCIEK 591 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VEK L +Q FIAND L ++ ++ LLTGPNM GKST++RQ ALIV+M Sbjct: 592 GRHPVVEKMLGEQH---FIANDVIL----EEEHAEMMLLTGPNMAGKSTYMRQVALIVLM 644 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+GS+VPA A IG+VD++F+RVG++D+LASG+STFMVEM+E A+IL+ AT S +ILD Sbjct: 645 AQIGSFVPADSATIGVVDRIFTRVGASDDLASGQSTFMVEMMEVANILHHATKNSLLILD 704 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+TLDGLSIAW+ IE++ + L ATH+HELT L +++ N + V + Sbjct: 705 EIGRGTSTLDGLSIAWSIIEHITTEIGAKTLFATHYHELTVLEETMPNLKNYCIAVKEIG 764 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 E IIFLH+++ G DHSYGIQV KLAG+P+ V+ RA ILK + Sbjct: 765 EDIIFLHQIVKGSVDHSYGIQVAKLAGVPSAVLERAKAILKQLD 808 >gi|78043130|ref|YP_360229.1| DNA mismatch repair protein HexA [Carboxydothermus hydrogenoformans Z-2901] gi|90109842|sp|Q3ACA5|MUTS_CARHZ RecName: Full=DNA mismatch repair protein mutS gi|77995245|gb|ABB14144.1| DNA mismatch repair protein HexA [Carboxydothermus hydrogenoformans Z-2901] Length = 841 Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust. Identities = 337/884 (38%), Positives = 493/884 (55%), Gaps = 52/884 (5%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S TPMM+QY++IK D L+F+R+GDFYELFF+DA++ASR L I LT R + +PM Sbjct: 2 SFTPMMKQYLDIKKQYSDCLLFFRLGDFYELFFEDAVIASRELEIVLTGRDAGQEERVPM 61 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVP H+A YI KL+ G+++AICEQ+E P +AK LV+R V ++ TPGT+TE+ Sbjct: 62 CGVPYHSAQGYIAKLLSRGYKVAICEQVEDPKKAK-----GLVKREVTKIYTPGTVTEEF 116 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR---LISDIMRIDPREIIFS 200 L +NY++A+A A+A ++STG I++ + + L S+I R+ P E + Sbjct: 117 FLQEKTNNYIIALAEKDGLIALAVAEVSTGYLGITSVDEGKIEVLASEIRRLAPTEAVV- 175 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 L + + L + + + N E IA F + K A Sbjct: 176 ---LKNFKNNFLLKDITGIV----NYLEKLPAEEIEIA----------FKG-PEASKEAY 217 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 ISY+K+ + G PE I S L+ D + R NLEILR + SLL ID+ Sbjct: 218 KILISYLKRIEPAVLSIFGQPEFYQIDSYLYFDESTRKNLEILRNREDN-SSSLLGIIDF 276 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G R E + PL + I RLD++ + + L +++ LK+ D+ R + Sbjct: 277 TQTAMGARKLKEELTKPLLNLKAIADRLDAVEILVNDYELRENLRENLKNLYDLERLSIK 336 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE--KTLSSM 438 L G PKD+ I+ + +I N N + + E K LP+ E + Sbjct: 337 LVCGTINPKDLIKIKQSLPQIWHIKNSI--NHVKNKSVLFAEIYKNLPEMREVYNLIDKS 394 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + DD P +DGG +++G + ++DE R R++ + I + + K E T IK+LK+ +N Sbjct: 395 IVDDPPVSPKDGGIIKNGYNPTVDEYRKAREEGQDWIINYEKKERERTGIKSLKVNYNKV 454 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GYFIEVT ++ ++ D + K QTM N RF T EL EN I A+ +E Sbjct: 455 FGYFIEVTKANLHLVPADYQRK------QTMVNAERFITEELKHYENLILGASEKLANLE 508 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 E F + + I++ E L A+ +A++D I+LA+ A E ++ RP+I +K+GR Sbjct: 509 YELFCEIRSEILKYQEDLKRAASAVALLDFLISLAVAAIEYDFTRPVITAEPVLEIKNGR 568 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VEK++ + + F+ ND L D L L+TGPNM GKST++RQ ALIVI+AQ Sbjct: 569 HPVVEKSVGRAN---FVPNDLYL----DTKENSLLLITGPNMAGKSTYMRQAALIVILAQ 621 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA YA +G+VDK+ +R+G+ D+LA G+STFMVEMIE +IL AT++S ++LDE+ Sbjct: 622 IGSFVPAEYARVGLVDKILTRIGATDDLAKGQSTFMVEMIECNNILRNATSRSLILLDEV 681 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DG+SIA A IEY+ + + R L +TH+HELT L + N T+ V + E Sbjct: 682 GRGTSTYDGISIAEAIIEYIQKKIKARTLFSTHYHELTGLEGEIPGVKNFTVLVQEKGEE 741 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 + FLHKV+PG D SYGI V KLAGLP V+ RAY+IL FE K ++ Sbjct: 742 VKFLHKVVPGKTDKSYGIYVAKLAGLPREVVERAYEILARFE---DKGLKVKDTVPVQLS 798 Query: 859 TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTL 902 E K S K +E L+L M+PL AL LY ++ L Sbjct: 799 LFEEKPEPSGVIKELIE----LDLIRMTPLEALNKLYELRQKAL 838 >gi|94969724|ref|YP_591772.1| DNA mismatch repair protein MutS [Candidatus Koribacter versatilis Ellin345] gi|189030434|sp|Q1IN52|MUTS_ACIBL RecName: Full=DNA mismatch repair protein mutS gi|94551774|gb|ABF41698.1| DNA mismatch repair protein MutS [Candidatus Koribacter versatilis Ellin345] Length = 882 Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust. Identities = 331/920 (35%), Positives = 521/920 (56%), Gaps = 92/920 (10%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TP+M+Q+ ++K +P++L+F+R+GDFYELFFDDA++A+R L ITLT R K G +PMC Sbjct: 5 TTPLMKQWAQVKRDHPNALLFFRLGDFYELFFDDAVIAARELQITLTARNKEKGNSVPMC 64 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H A +YI KLI+ G ++A+C+Q+E P AKK LV+R V R++TPGT T D Sbjct: 65 GVPYHAAENYISKLIRRGFKVAVCDQVEDPKLAKK-----LVKREVTRVMTPGT-TADSQ 118 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS----TSNHDRLISDIMRIDPREIIFS 200 L ++N+L AVA A +D+STG F+ + + R+ +++ + PREI++ Sbjct: 119 LGSEENNFLAAVASHGDFVGFAALDLSTGEFRATEFKGSDARRRIQEELLTLRPREILYG 178 Query: 201 EK------------------ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYN 242 +L+ E S ET V P D++I + +++ Sbjct: 179 SSLPLFDAARPANAVSGAMPKLATVEGASWAETPLEDWVFAP----DYAIP--LVENHFG 232 Query: 243 ITTVDTFGSFSQVEKTAAAAAI-SYIKKTQ---MVNKPTIGYPEREDIQSTLFIDSAARS 298 + +++ FG ++ +AA AI Y+++TQ + + IG+ ER Q+ L +D+ Sbjct: 233 VLSLEGFGLANKASAASAAGAILHYVRQTQRGSLHHVDRIGFYER---QNCLVLDAVTVR 289 Query: 299 NLEILRTLSGSREQ--SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQ 356 NLE++ L + + +L + +D ++T G RL + P D+++IN RLD+I + Sbjct: 290 NLELIEPLFTNTGEGVTLFRALDATMTPMGKRLLRAWMLRPSIDTSEINARLDAIEMQVV 349 Query: 357 NPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEE 416 + + +++ + D+ R LSR+ + P+D+ + + F + LP+ Sbjct: 350 DTLGREELRRAMDGILDIERLLSRVTLETANPRDL----------LALAQCFGR--LPK- 396 Query: 417 LRGAVEKL-----------KKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETR 465 +R A+++ L + + L D+ P DGG +R+G DA+LDE R Sbjct: 397 VRAAMQRFTSARFLVLHGLLDDLADLRDRIFTTLVDEPPITLNDGGVVREGLDAALDELR 456 Query: 466 SLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIH 525 +L SK+ IA ++ + + T I +LKIK NN GY++E+++++ + D E K Sbjct: 457 NLSHNSKQFIAQIEERERKRTGIGSLKIKFNNVFGYYLEISNANKHLAPADYERK----- 511 Query: 526 RQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAI 585 QT+ N RFTT EL + E ++ +A + IE F L AI ++ + +A Sbjct: 512 -QTLVNAERFTTPELKEYEAKVLDAQEKIVEIERRIFGELRTAIAAEARRVRQTGLALAE 570 Query: 586 IDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPN 645 +D+ A LA +NYCRP D S F + + RHP++E S+ F+ ND L+ Sbjct: 571 VDVLANFAHLAATRNYCRPKFDQSGEFELIEARHPVIELPELTGSADRFVPNDLYLNA-- 628 Query: 646 DKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADN 705 + + +LTGPNMGGKST+LRQ AL+ +MAQMGS+VPA A + +VD++F+R+G+ADN Sbjct: 629 --TTHTVIVLTGPNMGGKSTYLRQAALVAVMAQMGSFVPARSARLSVVDRVFTRIGAADN 686 Query: 706 LASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCR 765 LA GRSTFMVEM ETA+ILN AT++S ++LDE+GRGT+T DGL+IAWA IE+LH R + Sbjct: 687 LARGRSTFMVEMTETAAILNTATDRSLILLDEVGRGTSTYDGLAIAWACIEFLHARTRAK 746 Query: 766 GLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLP 825 L ATH+HELT L+ L N + V +S ++FL +V PG AD SYGI+V KLAGLP Sbjct: 747 ALFATHYHELTVLADELSGVKNYHVSVKESGGNVVFLRRVEPGAADKSYGIEVAKLAGLP 806 Query: 826 NTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLF-------VEKIK 878 VI RA +LK E + + +K+ + + S +F V+++K Sbjct: 807 AEVIERARAVLKEHESVERQATSHL--------SKDERGSDSMQLTIFTPLSQKIVDQLK 858 Query: 879 CLNLDEMSPLTALKTLYAVK 898 +L+ ++P+ AL L+ +K Sbjct: 859 ETDLNRLTPIEALNLLHELK 878 >gi|91201084|emb|CAJ74142.1| strongly similar to DNA mismatch repair protein MutS [Candidatus Kuenenia stuttgartiensis] Length = 870 Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust. Identities = 327/887 (36%), Positives = 508/887 (57%), Gaps = 38/887 (4%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD-IP 82 + TPM+RQY EIK + D+L+F+RMGDFYELFF+DA +AS+ LGITLT R K G++ +P Sbjct: 3 TETPMIRQYNEIKKDHKDALLFFRMGDFYELFFEDAKIASKILGITLTSRSK--GENAVP 60 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M G+P H + Y +KLIK GH++AICEQ++ P EAK +V R V+R++TPGT+TED Sbjct: 61 MAGIPHHASESYTRKLIKAGHKVAICEQLQDPGEAK-----GIVDRGVIRIITPGTVTED 115 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK 202 LL ++NYL+A+ + + + ++WID+STG F+I +RL ++ R++P EI+ + Sbjct: 116 ALLDGKNNNYLLALWKDKEIFGLSWIDLSTGKFEIEDIREERLFDELARLNPSEIVLPDD 175 Query: 203 -ELSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 S+A + T N + P F S + +++ +++ FG A Sbjct: 176 ITESNATFTQRIRTECNAMITPLPAWEFSESTGYQALLEHFGTHSLEGFGCQDAGVALGA 235 Query: 261 AAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTI 318 A AI Y+K+TQ + I ++ + + + +D A + +LE+ +T+ + +RE SLL + Sbjct: 236 AGAILHYLKETQKTSLKHIAKIQKYETNNRVIMDRATQQSLELTQTIRNKNREGSLLGAL 295 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D + T G RL + + SPL + +I R + F + P L I IL D+ R Sbjct: 296 DQTKTPMGARLLKDWVISPLKNHDEIKYRQLGVREFTEKPELRREIIAILHDIYDIERIA 355 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINI---LNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 +++ GR +D+ ++ + + L+ F+ + + + ++ L +L +TL Sbjct: 356 AKVSCGRANARDLISLQQSLSKLPELKEKLDFFITAIISDREK-EIDPLDEL-----RTL 409 Query: 436 SSM-LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 M +S D P ++GG +++G DA+LDE R + K+ IA Q + T I +LK+ Sbjct: 410 IGMAISLDSPHSLKEGGIIKEGYDAALDELRYISKNGKQWIAHFQAEEIARTNINSLKVG 469 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+IE+T++ + +I +QT+ N R+ T EL + E ++ A A Sbjct: 470 YNKVFGYYIEITNTHRENIPP------AYIRKQTLKNAERYITPELKEYETKVLTAEERA 523 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 +E + F L + ++ L S+ IA ID+ LA +A E Y P I +S + Sbjct: 524 KDLEYDLFIQLRDKAGTFTKQLQGISEAIAQIDVLSTLAKIAVENRYAMPEITDSLELNI 583 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 DG HP++ L ++ F+ ND +L DK ++TGPNM GKST++RQ AL+V Sbjct: 584 NDGCHPVLTMELDRER---FVPNDINLDGVQDKT----MVITGPNMAGKSTYIRQTALLV 636 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMAQMGS++PA A IG VD++F+RVG++D L+ G+STFMVEM ETA+ILN AT +S +I Sbjct: 637 IMAQMGSFIPAKNATIGTVDRIFARVGASDELSKGQSTFMVEMNETANILNNATERSLII 696 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDE+GRGT+T DG+SIAWA EY+++ R L ATH+HELT+LS N + V + Sbjct: 697 LDEVGRGTSTFDGISIAWAITEYIYQNIGARTLFATHYHELTELSLLFSGIKNFNVAVKE 756 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL---YHHNQKDMR 851 E IIFL K++ G D SYGI V +LAG+P +I RA IL E + K Sbjct: 757 WGEEIIFLRKIVAGGTDKSYGIHVARLAGIPKQIIQRARSILNNLEAATLDINGKPKFAP 816 Query: 852 LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 L ++ + + + L +++IK L+LDE++P AL L +K Sbjct: 817 LKTDHVKKPRQRKLFASKEDLVIDEIKKLSLDEIAPADALNKLAELK 863 >gi|331089571|ref|ZP_08338470.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium 3_1_46FAA] gi|330404939|gb|EGG84477.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium 3_1_46FAA] Length = 883 Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust. Identities = 320/903 (35%), Positives = 518/903 (57%), Gaps = 61/903 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD--IPM 83 TPMM+QY+E KS D ++FYR+GDFYE+FF+DAL ASR L ITLT GK+ G++ PM Sbjct: 5 TPMMKQYMETKSQYQDCILFYRLGDFYEMFFEDALTASRELEITLT--GKNCGQEEKAPM 62 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVP H Y+ +L+ G+++AICEQ+E P + K +V+R VVR+VTPGT + Q Sbjct: 63 CGVPYHAVEGYLNRLVAKGYKVAICEQVEDP-----KTTKGIVKREVVRIVTPGTNLDTQ 117 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEK 202 L T +NY+M + I + ++ DISTG F + +L+ +I R P EII +E Sbjct: 118 ALDETKNNYIMCIVYIADRYGVSVADISTGDYFVTEIPDSAKLLDEIYRFSPSEIICNEA 177 Query: 203 -ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAA 260 +S + + + LG + + +FD + ++ +++ +++ G + +A Sbjct: 178 FYMSGVDMDGMKDRLGITIYSLESWYFDDEVCRKKLLEHFEVSSFAGLGLADYDCGIISA 237 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTID 319 A + Y+ +TQ + + + + IDS+ R NLE+ TL +++ SLL +D Sbjct: 238 GALLQYLLETQKNSLSNLTHITPYAAGKFMMIDSSTRRNLELCETLREKQKRGSLLWVLD 297 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G R + + PL D T+I RLD++ + I I++ L D+ R ++ Sbjct: 298 KTKTAMGARTLRKYVEQPLIDKTEIIRRLDAVQELKEQAISREEIREYLSPVYDLERLIT 357 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 ++ G P+D+ R + +L + +K +L ++L ++ L+ L ++K + Sbjct: 358 KIAYGSANPRDLTAFRSSLEMLPALLYILQEMKAELLKDLAVDLDPLEDLCILVKKAIR- 416 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 +D P ++G + DG + +D+ R + K +A L+ E+T IKNLKIK+N Sbjct: 417 ---EDPPIAMKEGNIINDGYNEEVDKLRRAKSDGKDWLAKLENDEREKTGIKNLKIKYNK 473 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY++EVT+S ++ + + +QT++N R+ T EL +LE+ I A + + Sbjct: 474 VFGYYLEVTNSYKEMVP------EYYTRKQTLANAERYITPELKELEDMILGAEDKLYAL 527 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E E + + + I Q E + ++ +A +D +LA++A+ NY RP I+ +K+G Sbjct: 528 EYELYSEVRDLIASQIERIQKTAKAVAALDAFASLALVAERNNYVRPKINEKGVIDIKEG 587 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ + + FI+ND L D ++ ++TGPNM GKST++RQ ALI +MA Sbjct: 588 RHPVVERMIPNEM---FISNDTYL----DDKKHRISIITGPNMAGKSTYMRQTALIALMA 640 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+GS+VPA A+IG+ D++F+RVG++D+LASG+STFMVEM E A+IL AT++S +ILDE Sbjct: 641 QIGSFVPAKSANIGLSDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSKSLLILDE 700 Query: 738 IGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 IGRGT+T DGLSIAWA IEY+ ++ + L ATH+HELT+L + +N + V + Sbjct: 701 IGRGTSTFDGLSIAWAVIEYISDSRLLGAKTLFATHYHELTELEGKIDNVNNYCIAVKEK 760 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 + I+FL K++ G AD SYGIQV KLAG+P VI RA +I++ + +D+ Sbjct: 761 GDDIVFLRKIVKGGADKSYGIQVAKLAGVPELVIGRAKEIVEEL------SDEDITARVS 814 Query: 856 EIQTKE--------------------SKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 EI +KE S + K+D + +E++K L++ M+P+ AL T+Y Sbjct: 815 EIASKERVVKKKPKVKKYDDVDIAQMSLFDTVKDDDV-LEELKNLDVGNMTPIDALNTIY 873 Query: 896 AVK 898 ++ Sbjct: 874 RLQ 876 >gi|313574677|emb|CBX26191.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] gi|313574679|emb|CBX26192.1| methyl-directed mismatch repair protein [Agrobacterium tumefaciens] Length = 439 Score = 546 bits (1406), Expect = e-153, Method: Compositional matrix adjust. Identities = 266/438 (60%), Positives = 333/438 (76%) Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 N RLD++ + I + L + ++ LK D+PR+LSRL + RG P+D+ IR G+ S I Sbjct: 1 NARLDAVAYLIDDVSLCDSLRDALKQVADMPRALSRLALERGGPRDLGAIRQGLASAERI 60 Query: 405 LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDET 464 + + LPEEL A+ LK LP LE L SML+DDLP KRDGGFLR+GA LD+ Sbjct: 61 AAILDQGLLPEELAAALADLKALPGGLEAMLGSMLADDLPLLKRDGGFLREGASPELDDV 120 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 R+LRDQS+R+IA LQL+YAEET IK+LKIKHNN LGYFIEVT+ +A V+ E+K RFI Sbjct: 121 RALRDQSRRVIAGLQLQYAEETGIKSLKIKHNNVLGYFIEVTAGNADVMMATDEAKARFI 180 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 HRQTM+ RFTT EL DLE+RI NA AL +ELE+F + A++ Q+E++ + +A Sbjct: 181 HRQTMAGAMRFTTTELADLESRIANAAAEALTMELEAFARMVEAVVHQAEAIKAGAAALA 240 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 IID++ +LA LA EQ YCRPI+D S F + GRHP+VE+ L++QS+ PFIAN+CDLS Sbjct: 241 IIDVASSLAYLATEQAYCRPIVDASMTFAITGGRHPVVEQALRRQSAGPFIANNCDLSAA 300 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 +G +WLLTGPNMGGKSTFLRQNALI I+AQ+GS+VPA AHIGIVD+LFSRVG++D Sbjct: 301 EGGKNGAIWLLTGPNMGGKSTFLRQNALIAILAQIGSFVPAEAAHIGIVDRLFSRVGASD 360 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 +LA GRSTFMVEM+ETA+ILNQAT++S VILDEIGRGTAT DGLSIAWA +E+LHE NRC Sbjct: 361 DLARGRSTFMVEMVETAAILNQATDRSLVILDEIGRGTATFDGLSIAWAAVEHLHEVNRC 420 Query: 765 RGLLATHFHELTDLSKSL 782 RGL ATHFHELT LS+ L Sbjct: 421 RGLFATHFHELTVLSEKL 438 >gi|326202164|ref|ZP_08192034.1| DNA mismatch repair protein MutS [Clostridium papyrosolvens DSM 2782] gi|325987959|gb|EGD48785.1| DNA mismatch repair protein MutS [Clostridium papyrosolvens DSM 2782] Length = 873 Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust. Identities = 329/902 (36%), Positives = 518/902 (57%), Gaps = 61/902 (6%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPMM+QY++IK D ++F+R+GDFYE+FF DA LASR L ITLT R L + Sbjct: 1 MGTVTPMMQQYLDIKEQYKDCILFFRLGDFYEMFFSDAELASRELEITLTGRDCGLEERA 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H AN+Y+ +L+ G+++AICEQ+E P AK +V+R+V+++VTPGT+T+ Sbjct: 61 PMCGVPFHAANNYVARLVSKGYKVAICEQVEDPALAK-----GIVKRDVIKVVTPGTVTD 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIF---KISTSN-HDRLISDIMRIDPREI 197 +L +NYLM++ + + +A +DI+TG F +I+ N ++L +I + P EI Sbjct: 116 ITMLDERKNNYLMSIYKNGNFYGLASVDITTGDFYGTRITWGNTREKLFDEIAKYLPSEI 175 Query: 198 IFSEKELSHAE-----------YKSLFET----LGNVAVAQPNVFFDHSISESRIADYYN 242 I + + + E Y S FE GN N F + ++ N Sbjct: 176 IVNTELCADNELTCEIKQRFNTYVSTFEEGSFEYGNAMDTLRNQFENRAL---------N 226 Query: 243 ITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEI 302 I D + A+ A ++Y++ TQ VN I ++ + +D+++R NLE+ Sbjct: 227 IQEYD-------IAVNASGALLTYLESTQKVNLSHIQNFNLYALEEYMILDASSRRNLEL 279 Query: 303 LRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILI 361 T+ S++ SLL +D ++T GGRL + I PL + I+ RL+++ + Sbjct: 280 TETMREKSKKGSLLWVLDKTMTSMGGRLLRKWIEQPLINHGDISLRLNAVEELKNKFMAR 339 Query: 362 NPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAV 421 +++LK D+ R + ++ +G +D+ +++ I S I + L E + Sbjct: 340 VEARELLKRVYDIERLMGKVILGSVNCRDLIALKNSI-SQIPYIKEILNGFETEYISSCY 398 Query: 422 EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLK 481 E+L L + + + + DD P ++GG ++DG + +D+ RS Q K IA+L+ Sbjct: 399 EQLDSL-EDVCNLIDISIIDDPPVTIKEGGIIKDGYNPEVDKLRSASIQGKDWIAALEAS 457 Query: 482 YAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELI 541 E+T IKNLK+ N GY+IEVT S S++ ++ +I +QT++N R+ T EL Sbjct: 458 EREKTGIKNLKVGFNRVFGYYIEVTKSYFSLVPEE------YIRKQTLANCERYITPELK 511 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 ++E+ I A +L+E F + + I EQ + + ++ +A ID+ +LA +A + Y Sbjct: 512 EIEDNILGAEEKIVLLEYSLFVQIKDKIAEQLSRIKSTARALAEIDVLASLAEVADREGY 571 Query: 602 CRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 C+P I S + DGRHP+VEK + F+ ND L D+ L ++TGPNM Sbjct: 572 CKPEISVSDKIEIVDGRHPVVEKMTDKSG---FVPNDTVLDMEEDR----LAIITGPNMA 624 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKST++RQ+ALIV+MAQ+GS+VPAS A IG+VD++F+RVG++D+LASG+STFMVEM E A Sbjct: 625 GKSTYMRQSALIVLMAQIGSFVPASSAKIGLVDRIFTRVGASDDLASGQSTFMVEMSEVA 684 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYL--HETNRCRGLLATHFHELTDLS 779 +IL AT +S ++LDEIGRGT+T DGLSIAWA IEY+ E CR L ATH+HELT+L Sbjct: 685 NILTNATKRSLLVLDEIGRGTSTFDGLSIAWAVIEYIVSKEQLGCRTLFATHYHELTELE 744 Query: 780 KSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF 839 L N + V + + +IFL K+I G AD SYGIQV KLAG+P VI RA +IL Sbjct: 745 GKLSGIKNYCITVKEKGDDVIFLRKIIRGGADGSYGIQVAKLAGVPQGVIDRAKEILANL 804 Query: 840 EKLYHHNQKDMRLYYPEIQTKES---KNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYA 896 + + +R ++ + + + D +E+I+ +++ ++P+ A+ LY Sbjct: 805 DDADINRNGKVRKIKKQVDGQLDLFAQAAKASADAEILEEIRKIDISRLTPIDAMNILYE 864 Query: 897 VK 898 ++ Sbjct: 865 LQ 866 >gi|119468991|ref|ZP_01612016.1| DNA mismatch repair protein [Alteromonadales bacterium TW-7] gi|119447643|gb|EAW28910.1| DNA mismatch repair protein [Alteromonadales bacterium TW-7] Length = 860 Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust. Identities = 323/885 (36%), Positives = 505/885 (57%), Gaps = 44/885 (4%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 +K TPMM+QY++IKS + D L+FYRMGDFYELFFDDA A++ L I+ T+RGK G I Sbjct: 11 IKQQTPMMQQYLKIKSEHRDILLFYRMGDFYELFFDDAKRAAQLLDISQTQRGKAGGDPI 70 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PM GVP H +Y+ +L+++G +AICEQ+ P +K V R VVR+VTPGT+++ Sbjct: 71 PMAGVPYHAVENYLARLVQMGESVAICEQVGDPATSK-----GPVERKVVRIVTPGTISD 125 Query: 142 DQLLSPTDSNYLMAVAR-IRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREIIF 199 + LL N L +V + + ++ +A++DI++G F + N D L S + R+ P E+++ Sbjct: 126 EALLQERQDNLLTSVWQNKKGQYGVAYLDINSGRFNVVEVNTDEALSSTLQRLSPAELLY 185 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT- 258 SE + E L E + A +P FD ++ + D + + FG VEK Sbjct: 186 SE----NFENTHLIEHIKG-ARRRPEWEFDLDTAQHLLCDQFGTKDLVGFG----VEKAH 236 Query: 259 ----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSL 314 AA + Y+K TQ + P I E + + +D+A R NLE+ LSG E +L Sbjct: 237 SALVAAGCLMQYVKDTQRIALPHIRAITLEHNEHAVILDAATRKNLELTVNLSGGFENTL 296 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 + +D + T G RL RI +P+ + ++N+RL++I+ + + L + + LK D+ Sbjct: 297 AQVLDKTATAMGSRLLKRRIHTPVRNKDELNSRLNAISAIL-DAQLCGELHESLKEIGDI 355 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R ++RL + P+D+ +R +++ + NL P + ++ +LP+ L+ Sbjct: 356 ERVIARLALCTARPRDLTRLRSALQALAPLHNLLSDASDPR-ITSIIKHSPELPE-LQAL 413 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L + D+ P RDGG + ++ LDE R+L + ++ L+ + E T I LKI Sbjct: 414 LERAVIDNPPVLIRDGGVIAPSYNSELDEWRNLSKGATDVLEQLEQRERERTGISTLKIG 473 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N G+FIEV+ +++ ++ D +I RQT+ N R+ EL + E+++ + + A Sbjct: 474 YNRVHGFFIEVSRANSHLVPAD------YIRRQTLKNNERYIIPELKEHEDKVLGSQSKA 527 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L +E + +E L I E L + +A +D+ LA A NY +P + ++ N + Sbjct: 528 LALEKQLYEELFEFIAPHIEQLQKMAAALADLDVLNNLAERAFALNYAKPELCDNDNISI 587 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 + GRHP+VE+ +K PFIAN +L+ + K+ ++TGPNMGGKST++RQ ALIV Sbjct: 588 QQGRHPVVEQVMKD----PFIANPVELN-----SQRKMLIITGPNMGGKSTYMRQTALIV 638 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 +MA +G YVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+ILN AT QS V+ Sbjct: 639 LMAHIGCYVPADSAKIGNIDRIFTRIGASDDLASGRSTFMVEMTETATILNNATAQSLVL 698 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+A+AT +L + L ATH+ ELT+L++ + N L + Sbjct: 699 MDEIGRGTSTYDGLSLAYATANHLASKISAKTLFATHYFELTELAEQTQGLVNVHLDAIE 758 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 N+ I F+H V+ G A S+G+QV LAG+P VIS+A LK E N + + Sbjct: 759 HNDTIAFMHTVLDGAASKSFGLQVAALAGVPKAVISQAKQKLKLLE-----NHQSVTAPN 813 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 E N L E++ ++ D +SP A + LY +KA Sbjct: 814 AEQHAFSFNNGAVIEPSLVEEQLSAIDPDNLSPRQAHELLYKLKA 858 >gi|332532869|ref|ZP_08408742.1| DNA mismatch repair protein MutS [Pseudoalteromonas haloplanktis ANT/505] gi|332037715|gb|EGI74166.1| DNA mismatch repair protein MutS [Pseudoalteromonas haloplanktis ANT/505] Length = 861 Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust. Identities = 326/882 (36%), Positives = 506/882 (57%), Gaps = 37/882 (4%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 +K TPMM+QY++IKS + D L+FYRMGDFYELFF DA A++ L I+ T RGK G I Sbjct: 11 IKQQTPMMQQYLKIKSEHRDILLFYRMGDFYELFFGDAKRAAQLLDISQTHRGKAGGDPI 70 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PM GVP H +Y+ +L+++G +AICEQ+ P +K V R VVR+VTPGT+++ Sbjct: 71 PMAGVPYHAVENYLARLVQMGESVAICEQVGDPATSK-----GPVDRKVVRIVTPGTISD 125 Query: 142 DQLLSPTDSNYLMAVARIRTE-WAIAWIDISTGIFKISTSNHDRLISD-IMRIDPREIIF 199 + LL N L +V + + + IA++DI++G F I N D S I R+ P E+++ Sbjct: 126 EALLQERQDNLLTSVWQSKKGLYGIAYLDINSGRFNIVEVNTDEAFSSTIQRLSPAELLY 185 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKT 258 SE E L E + A +P FD ++ + D + + FG + Sbjct: 186 SES----FENVHLIEHIKG-ARRRPEWEFDLDTAQHLLCDQFGTKDLVGFGVDKAHSALV 240 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA + Y+K TQ + P I E + + +D+A R NLE+ LSG E +L + + Sbjct: 241 AAGCLMQYVKDTQRIALPHIRAITLEHNEHAVILDAATRKNLELTVNLSGGFENTLAQVL 300 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D + T G RL RI +P+ + ++N+RL++I+ + + L + + LK DV R + Sbjct: 301 DKTATPMGSRLLKRRIHTPIRNKDELNSRLNAISAIL-DAQLCGELHESLKEIGDVERVI 359 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 +RL + P+D+ +R +++ + L + P + G ++ +LP L+ L Sbjct: 360 ARLALCTARPRDLTRLRSALQALAPLHTLLADANDPR-IAGIIKHSPELP-DLQALLERA 417 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + ++ P RDGG + G ++ LDE R+L + ++ L+L+ E T I LKI +N Sbjct: 418 VIENPPVLIRDGGVIAPGYNSELDEWRNLSKGATDVLEQLELRERERTGISTLKIGYNRV 477 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 G+FIEV+ ++A ++ D +I RQT+ N R+ EL + E+++ + + AL +E Sbjct: 478 HGFFIEVSRANAHLVPAD------YIRRQTLKNNERYIIPELKEHEDKVLGSQSKALALE 531 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + +E L I E L + +A +D+ LA A NY +P + ++ N +K GR Sbjct: 532 KQLYEELFRFIAPHIEQLQMMAAALADLDVLNNLAERAFALNYAKPELCDNDNISIKQGR 591 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ +K+ PFIAN +L+ + K+ ++TGPNMGGKST++RQ ALIV+MA Sbjct: 592 HPVVEQVMKE----PFIANPVELN-----SQRKMLIITGPNMGGKSTYMRQTALIVLMAH 642 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+ILN AT QS V++DEI Sbjct: 643 IGSYVPADSAKIGNIDRIFTRIGASDDLASGRSTFMVEMTETATILNNATAQSLVLMDEI 702 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGLS+A+AT ++L + L ATH+ ELT+L++ N L + N+ Sbjct: 703 GRGTSTYDGLSLAYATADHLASKISAKTLFATHYFELTELAEQTTGLVNVHLDAIEHNDT 762 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 I F+H V+ G A S+G+QV LAG+P VI++A LK E N + + E Q Sbjct: 763 IAFMHTVLDGAASKSFGLQVAALAGVPKAVIAQAKQKLKLLE-----NHQSVTAPNTEQQ 817 Query: 859 TKESKNNLSKNDKLFV-EKIKCLNLDEMSPLTALKTLYAVKA 899 N ++++ V E++ ++ D +SP A LY +KA Sbjct: 818 AFTFNNEIAQSTPSEVEEQLSAIDPDNLSPRQAHDLLYKLKA 859 >gi|182415560|ref|YP_001820626.1| DNA mismatch repair protein MutS [Opitutus terrae PB90-1] gi|177842774|gb|ACB77026.1| DNA mismatch repair protein MutS [Opitutus terrae PB90-1] Length = 855 Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust. Identities = 314/839 (37%), Positives = 471/839 (56%), Gaps = 50/839 (5%) Query: 26 TPMMRQYIEIKSINP-DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 TPMM+QY E++ P D+ + +R+GDF+E+FFDDA+ SR LG+TLTKR +D PMC Sbjct: 9 TPMMQQYFEVRRGLPKDTFLLFRLGDFFEMFFDDAIAGSRLLGLTLTKR-----QDFPMC 63 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G+P H A+ Y+ KL+ G ++A+C+Q E P +A K LVRR + R+++PGT Sbjct: 64 GIPAHAADTYVTKLLAAGKKVALCDQAE-PAKAGK-----LVRRQLTRILSPGTTLAANQ 117 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEKE 203 L ++YL A+A + AW+D+STG FK++T L+ + +DP E++ E E Sbjct: 118 LDAARNHYLCALAYDKLGLHAAWLDLSTGEFKVATDPSIANLLPVLTALDPAELLVIEGE 177 Query: 204 LSHAEYKSLFETL---------GNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 L+ + +T G + FD + + D + + FG Sbjct: 178 LARWQATPHDQTAVHALHAFCSGRLCSELAGYHFDTATGGKTVMDTLGVLNLQGFGLAHT 237 Query: 255 VEKTAAAAAISYIKKTQMVNKP-TIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 A A+ Y + KP + + TL +D A NLEI + G RE S Sbjct: 238 HPALGPAGAVVYYATENLCAKPENLRTLQEYRSARTLLLDPATLRNLEIFASARGGREGS 297 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L I+ ++T AG RL +A+P + +I R + + P+ + +++ L + D Sbjct: 298 LFGAINRTVTPAGARLLERWLAAPTLELPEIIRRQTLVAELLAQPMRLLALRESLTNVRD 357 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINI---LNLFLKNDLPEELRGAVEKLKKLPQS 430 +PR L RL+ P+++ +RD + ++ L F + L E Sbjct: 358 IPRILGRLQNRLRNPRELGGVRDTLAQLPSLRAELTAFGSSQLSALSSQLQEF-----AH 412 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L + L L+D+LP DG ++R G DA LD RSL +K ++ L+ E T I++ Sbjct: 413 LRELLPRALADELPADLADGNYIRSGYDAELDRLRSLTSDNKTWLSDLERTEQERTGIRS 472 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK++ NN GY+IEVT ++ ++ D +I RQT R+ T L E I +A Sbjct: 473 LKVRFTNNFGYYIEVTKANLHLVPSD------YIRRQTTVGGERYVTEALRQKEKEIFHA 526 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 +AL E E F L A++++S +L + ++ +A +D+ A+LA+E +YC+P++D+S Sbjct: 527 EENALAREFELFNALVAAVLDESIALTHTAEALAELDVLCGWALLAREWDYCQPVLDDSD 586 Query: 611 NFIVKDGRHPIVEK-------TLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 + +GRHP+VE+ TL + +S F+ ND L C + ++ L+TGPNM GK Sbjct: 587 VLEISEGRHPVVEQMLRSPDVTLPRGASAGFVPNDTALGC----SEAQIALITGPNMAGK 642 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 ST++RQ ALI ++AQ+G +VPA IG+VD++FSRVG++D+LA G STFMVEM ETA+I Sbjct: 643 STYIRQVALIALLAQIGCWVPAKSCRIGLVDRIFSRVGASDDLARGNSTFMVEMNETANI 702 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKS 781 LN T++S +ILDEIGRGT+T DGLSIAWA +E+LH R L ATH+ ELT L K Sbjct: 703 LNNTTDRSLIILDEIGRGTSTYDGLSIAWAVVEHLHRDPAKGPRTLFATHYQELTQLEKH 762 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 L R N ++ V + N+ I+F+ +VIPG AD SYGIQV +LAGLP +VI RA IL E Sbjct: 763 LTRLRNLSVAVKEWNDDIVFVRRVIPGAADRSYGIQVARLAGLPLSVIDRAKTILGKLE 821 >gi|283782023|ref|YP_003372778.1| DNA mismatch repair protein MutS [Pirellula staleyi DSM 6068] gi|283440476|gb|ADB18918.1| DNA mismatch repair protein MutS [Pirellula staleyi DSM 6068] Length = 869 Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust. Identities = 328/893 (36%), Positives = 497/893 (55%), Gaps = 62/893 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD-IPMC 84 TPMM+QY++ K D+L+ +RMGDFYELF DDA ASR LG+TLT R K G++ +PM Sbjct: 4 TPMMQQYLDAKQACGDALLLFRMGDFYELFHDDARTASRVLGLTLTTRDK--GENPVPMA 61 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G P H Y+ KLI G R A+CEQ+E P +AK LV+R V R+VTPGTLT+D L Sbjct: 62 GFPYHQLEGYLAKLIGGGLRAAVCEQVEDPRQAK-----GLVKREVTRVVTPGTLTDDAL 116 Query: 145 LSPTDSNYLMAVA-----RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 L P +SNYL A+ + T +AW D+STG F+ + RL ++ R+ P E + Sbjct: 117 LDPRESNYLAAMVLPDTLQPHTPVGLAWADLSTGRFQAAVFPFARLGDELARLQPSECLL 176 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 + + + +P F S++ + + +++ FG F + + A Sbjct: 177 GDDQPPPTCPFPPRMMI----TRRPEWTFARDTSQAVLQKQLQVASLEGFG-FDESDMLA 231 Query: 260 AAAA---ISYIKKTQMVNKPTIG--YPEREDIQSTLFIDSAARSNLEILRTL-SGSREQS 313 AA + Y+++TQ + I P R +L ID A R +LEI RT SG+RE S Sbjct: 232 IRAAGGILEYLRETQKTSLDHIDRLLPYRSG--ESLEIDEATRRSLEITRTFRSGAREGS 289 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL ID +IT G RL A+ + +PLT+ I R D++ + + I++ L D Sbjct: 290 LLSVIDQTITPPGSRLLADWVGAPLTNLAAIGARQDAVELLRNSATVRRQIREELAGVYD 349 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R ++R+ R P+D+A + G + L L LR + L L L++ Sbjct: 350 LERLIARVTTLRASPRDLAFV------GRTLARLPQLKALVAHLRAPL--LDDLQTRLDE 401 Query: 434 T------LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 + L++ L DD P RDG F+R G LD R + K IA Q E+T Sbjct: 402 SPALRDLLAAALEDDCPLLARDGNFIRQGFHGELDRLREMAHGGKAWIARYQADQIEKTG 461 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 I NLK+ N GY+IE+T++ ++ +I +QT+++ R+ T EL + E ++ Sbjct: 462 IPNLKVAFNKVFGYYIEITNAQKE------KTPPEYIRKQTVASAERYITPELKEYEEKV 515 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 A + +E + F L + + + +L + IA +D+ ALA LA +YCRP++ Sbjct: 516 LTADERSKELEYQLFVELRDKTHQFARALRMTAAAIAELDVLAALAQLADRPDYCRPVMT 575 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 + +GRHP+++ L + + F+ ND L + G + L+TGPNM GKST++ Sbjct: 576 EDQVVEIVEGRHPVLDAILPRGT---FVPNDTTLGT----DGGLVMLITGPNMAGKSTYI 628 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ A++ ++A +GS++PAS A IGI D++F+RVG++D L+ G+STFMVEM ETA ILN A Sbjct: 629 RQVAVLSLLAHVGSFLPASRATIGICDRIFARVGASDELSRGQSTFMVEMTETARILNSA 688 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 T +S VILDEIGRGT+T DG+S+AWA +E+LH+ CR L ATH+HELTDL+ SL N Sbjct: 689 TARSLVILDEIGRGTSTYDGISLAWAIVEHLHDQIGCRTLFATHYHELTDLAGSLAGVRN 748 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ 847 ++ V + + ++ LHK++PG AD SYGI +LAG+P +V RA IL E + Sbjct: 749 LSVAVREWQDQVVLLHKIVPGAADKSYGIHCARLAGVPRSVNERAKQILAKLEGENLDTE 808 Query: 848 KDMRLYYPEIQTKESKNN------LSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 +L +TK+S+ + + +E+++ L+L ++PL A++ L Sbjct: 809 GRPKLI---ARTKKSRKGDLQLTLFAPEEHPLLEQLRQLDLAGLTPLQAMQWL 858 >gi|167771419|ref|ZP_02443472.1| hypothetical protein ANACOL_02785 [Anaerotruncus colihominis DSM 17241] gi|167666059|gb|EDS10189.1| hypothetical protein ANACOL_02785 [Anaerotruncus colihominis DSM 17241] Length = 871 Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust. Identities = 304/828 (36%), Positives = 482/828 (58%), Gaps = 28/828 (3%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +++ +PMM+QY IK + D ++F+R+GDFYE+F+DDA+LASR L +TLT R + Sbjct: 4 DMQKLSPMMQQYFAIKEKHKDHILFFRLGDFYEMFYDDAVLASRELELTLTGRDCGQEER 63 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 PMCGVP H YI +LIK G+++AICEQ+E+P +AK +V+R+V+R+VTPGTL Sbjct: 64 APMCGVPFHACETYIARLIKKGYKVAICEQMENPADAK-----GVVKRSVIRVVTPGTLI 118 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD---RLISDIMRIDPREI 197 E +LS +NY+ + W +A D STG +S D +++++ R P EI Sbjct: 119 ESNMLSEDANNYIACIL-FDQGWGLACADSSTGQLFVSQFAADAQGEVVNELGRYCPSEI 177 Query: 198 IFSEKELSHAEYKSLFET-LGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 IF+E L E + + L VA N FD +E IA +++ + + Sbjct: 178 IFNEGILDQTEVTAFIQKKLHCVADLCDNDRFDPQAAEDLIARHFSKPSGALGLDGRPLA 237 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLL 315 A A ++Y+ +TQ I + + ++ +D AR NLE+ +T+ +G + +LL Sbjct: 238 SRALGALLAYLYETQQKGLERITDIAYVNPEQSMALDLTARRNLELTQTMRTGEKRGTLL 297 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T G RL + PL + IN RL+++ + +L + L D+ Sbjct: 298 WVLDRTKTAMGKRLMRAWLDKPLVNPAVINKRLNAVEELFSDTMLRCDLIDSLSGVFDLE 357 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R ++R+ G P++ + R + L ++ L A + L L + + L Sbjct: 358 RLMTRIIYGSASPREYKALEGACRK-MPALKARMEGCASAYLCEARDALDPL-EDVSDLL 415 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + + D+ P +DGG +R+G +LDE R+L SK+++ ++ + E+T IKN+KI + Sbjct: 416 ARAIVDEPPAAVKDGGVIREGYSPALDELRALIHDSKKLLVGIETQEKEKTGIKNMKIGY 475 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+IEV+ S+ ++ D +I +QT++N R+ T EL LE +I +A Sbjct: 476 NRVFGYYIEVSKSNLGLVP------DTYIRKQTLANCERYITQELKQLEEKILSAGERIA 529 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E E+FE + A+ Q + + +A +D+ +LA +A YCRP + S +++ Sbjct: 530 TLENETFEAVRAAVSAQLHRVQATASAVARLDVYCSLAAVASANGYCRPDVGLSDGILIR 589 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 DGRHP+VE+ + PF++ND L C ++ + ++TGPNM GKST++RQ ALIV+ Sbjct: 590 DGRHPVVEQLM---DGAPFVSNDTTLDCGENQ----IAIITGPNMAGKSTYMRQTALIVL 642 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+GS+VPA+ A IG+VD +++RVG++D+LASG+STFMVEM E A I+ QAT++S +IL Sbjct: 643 MAQIGSFVPAASACIGVVDGIYTRVGASDDLASGQSTFMVEMTEVAQIMKQATSKSLLIL 702 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQVS 793 DEIGRGT+T DG+SIA A +EY+ + R + L ATH+HELT L +L N + Sbjct: 703 DEIGRGTSTFDGMSIARAVLEYIADKKRVGAKTLFATHYHELTALEDTLSNVKNYNIACK 762 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 + +IFL +++PG AD SYGI+V KLAG+P+ +I RA +L+ E+ Sbjct: 763 KRGDELIFLRRIVPGGADDSYGIEVSKLAGVPDWIIRRARQVLEQLEQ 810 >gi|163814090|ref|ZP_02205482.1| hypothetical protein COPEUT_00243 [Coprococcus eutactus ATCC 27759] gi|158450539|gb|EDP27534.1| hypothetical protein COPEUT_00243 [Coprococcus eutactus ATCC 27759] Length = 866 Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust. Identities = 328/881 (37%), Positives = 506/881 (57%), Gaps = 43/881 (4%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY+E+K+ D ++FYR+GDFYE+FFDDAL ASR L ITLT R + PMCGVP Sbjct: 1 MMAQYMEVKNQYKDCILFYRLGDFYEMFFDDALTASRELEITLTGRDCGQEERAPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H + YI KLI+ G+++AICEQ+E P AK LV+R V+R+VTPGT +L Sbjct: 61 YHACDIYINKLIEKGYKVAICEQMEDPKLAK-----GLVKREVIRIVTPGTNMSQAILDE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFK-ISTSNHDRLISDIMRIDPREIIFSEKELS- 205 T +NYLM + E+ +A DI+TG F+ S+ +L +I + P EII + LS Sbjct: 116 TRNNYLMCIFGCNEEYGLAVCDITTGEFRSCHVSSTAKLYDEINKYSPTEIIGNGAFLSC 175 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT--AAAAA 263 + + E + P+ +F+ E I + + ++D G E + A Sbjct: 176 DLNFDYMKEKMKITISEAPSHYFNDDTCEDFIKRQFKVGSIDGLGIEDDQEDILISVGAL 235 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTLSGSREQ-SLLKTID 319 + Y+ +TQ K ++ + R D+ S + IDS++R NLE+ TL +++ SLL +D Sbjct: 236 LQYLHETQ---KNSLDHINRMDVYSIEDYMIIDSSSRRNLELTETLRDKQKRGSLLWVMD 292 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G R+ I PL I RLD+I + I + I++ L + D+ R ++ Sbjct: 293 KTKTAMGARMLRNMIEQPLIHKDDIEARLDAIAELNNSVIDRDEIREYLNTIYDLERLMT 352 Query: 380 RLKIGRGEPKDIAVIRDGIR---SGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 R+ + P+D+ + I + I +L F + L E +R ++ L L + L++ + Sbjct: 353 RISLRTANPRDLLAFKTSIHLLPAIIQVLGNFYSDGLTE-IREGIDDLHDLYELLDRAIV 411 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 D+ P R+GG +DG +D ++ K IA L+ + E+T IKNLKIK N Sbjct: 412 ----DEPPILIREGGIFKDGYLEDIDTLKNATTDGKNWIAELEAREREKTGIKNLKIKFN 467 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+ +VT+S S++ D FI +QT++N R+TT EL L I +++ + Sbjct: 468 KVFGYYFDVTNSYKSLVP------DYFIRKQTLANSERYTTEELDRLAGVILGSSDKLVA 521 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E ++ L + + + + + IA++D +L+ +A + Y RP I+N +KD Sbjct: 522 LEYNTYVELRDTLAAELTRVQRTAHNIAMLDALCSLSYVAIKNGYVRPDINNDGVINIKD 581 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VEK L ++ FI ND L + + ++ ++TGPNM GKST++RQ ALIV+M Sbjct: 582 GRHPVVEKML---NNDMFITNDTYL----NNHESRISIITGPNMAGKSTYMRQTALIVLM 634 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+GS+VPA+ A IGI D++F+RVG++D+LASG+STFMVEM E A+IL AT S +ILD Sbjct: 635 AQVGSFVPAASADIGICDRIFTRVGASDDLASGQSTFMVEMSEVANILRNATKNSLLILD 694 Query: 737 EIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 EIGRGT+T DGL+IAWA +EY+ + + L ATH+HELT+L L +N + V + Sbjct: 695 EIGRGTSTYDGLAIAWAVVEYISNSELLGAKTLFATHYHELTELEGKLSAVNNYCIAVKE 754 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL-KTFEKLYHHNQKDMRL- 852 + I+FL K++ G AD SYGIQV KLAG+P+ VI+RA +I + +K + K++++ Sbjct: 755 DGDDIVFLRKIVKGGADRSYGIQVAKLAGVPDVVIARANEICNQLIDKDITNKLKEIKIT 814 Query: 853 --YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTAL 891 + P+ + S + +E IKC++L M+P+ AL Sbjct: 815 NDFKPKNDDTQMSMFGSLAESQVIEDIKCVDLSNMTPMKAL 855 >gi|54310168|ref|YP_131188.1| DNA mismatch repair protein MutS [Photobacterium profundum SS9] gi|81697302|sp|Q6LMU0|MUTS_PHOPR RecName: Full=DNA mismatch repair protein mutS gi|46914609|emb|CAG21386.1| putative DNA mismatch repair protein MutS [Photobacterium profundum SS9] Length = 856 Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust. Identities = 321/887 (36%), Positives = 496/887 (55%), Gaps = 43/887 (4%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 + L++ TPMM+Q++ IK+ NPD+L+FYRMGDFYELFFDDA AS+ L ITLTKRG G+ Sbjct: 4 KGLETHTPMMQQFLRIKAENPDTLLFYRMGDFYELFFDDAKRASQLLDITLTKRGSSNGQ 63 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H Y+ KL++ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 64 PIPMAGLPYHAVEGYLAKLVQQGVSVAICEQIGDPAT-----SKGPVDRQVVRIVTPGTV 118 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LLS N + A+ + + A +DI++G F +S + + +++ R P E++ Sbjct: 119 SDEALLSERRDNLVAAIYQNSKGFGYATLDITSGRFMLSEPETEEAMQAELQRTSPAELL 178 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + E + E + +P FD + ++ + + FG VEKT Sbjct: 179 YPED----FTQMHIIEAIKGTR-RRPVWEFDLDTARQQLTMQFGTRDLIGFG----VEKT 229 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y+K TQ P I + ++ +D+A R NLE+ + LSG + + Sbjct: 230 ERGLSAAGCLLQYVKDTQRTALPHIRAITLDSKDHSVILDAATRRNLELTQNLSGGFDNT 289 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D++ T G RL + P+ D+ ++N RLD+I F + I + ++L D Sbjct: 290 LASVLDHTATPMGSRLLKRWLHQPIRDTKQLNHRLDAIAAFKDTGMFIE-VAEVLHHMGD 348 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R L+RL + P+D+A +R ++S + +L D+ + G + K L + Sbjct: 349 LERILARLALRSARPRDLARMRSALQSLPQLADLL--ADIEQPRIGELAKYSAPMDELCE 406 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + ++ P RDGG L G +A LDE R L D +K+ + L+ + E+ I +LK+ Sbjct: 407 LLERAIIENPPVIIRDGGVLAPGYNAELDEWRDLADGAKKFLDDLETREREQHGIDSLKV 466 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N G+FI+++ + + + D ++ RQT+ N R+ EL + E+++ ++ + Sbjct: 467 GFNQVHGFFIQISRGQSHL------APDHYVRRQTLKNAERYIIPELKEHEDKVLSSKSK 520 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E + +E L + ++ E L NA+ ++ +D+ LA A NYCRP + + T Sbjct: 521 ALGLEKKLWEELFDQLLPHLERLQNAASALSELDVLANLAERADTLNYCRPELTDQTGIE 580 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + GRHP+VE+ L S+PFIAN L +D+ ++ ++TGPNMGGKST++RQ ALI Sbjct: 581 IAAGRHPVVEQVL----SEPFIANPTSLH--HDR---RMLIITGPNMGGKSTYMRQTALI 631 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +GS+VPA IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT++S V Sbjct: 632 ALMAHVGSFVPAEAVKIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATSKSLV 691 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA+ E+L E L ATH+ ELT+L + N L Sbjct: 692 LMDEIGRGTSTYDGLSLAWASAEWLAEKISAMTLFATHYFELTELPSMMDGLANVHLDAV 751 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 + + I F+H V G A SYG+ V LAG+P VI RA L E H + Sbjct: 752 EHGDEIAFMHAVQEGAASKSYGLAVASLAGVPKAVIKRAKAKLTQLETTGHQQA----IK 807 Query: 854 YPEIQTKESKN-NLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 P +E + L E + +N DEM+P AL LY +KA Sbjct: 808 NPSKAPREEQQLTLLPEPSDVEEALAKVNPDEMTPRQALDELYRLKA 854 >gi|225572115|ref|ZP_03780979.1| hypothetical protein RUMHYD_00409 [Blautia hydrogenotrophica DSM 10507] gi|225040449|gb|EEG50695.1| hypothetical protein RUMHYD_00409 [Blautia hydrogenotrophica DSM 10507] Length = 877 Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust. Identities = 315/888 (35%), Positives = 506/888 (56%), Gaps = 36/888 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM++Y++ K D ++FYR+GDFYE+FF+DA LAS+ L ITLT + L + PMCG Sbjct: 4 SPMMQEYVKTKEEYKDCILFYRLGDFYEMFFEDATLASQELEITLTGKDCGLEERAPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A+ Y+ KLI+ G+++AICEQ+ P + K LV+R VVR+VTPGT+ + L Sbjct: 64 VPYHAADTYVNKLIEKGYKVAICEQVGDP-----KTTKGLVKREVVRVVTPGTVLDTVSL 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKE- 203 T +NY+M++ + A DI+TG F +L+ +I + P EII ++ Sbjct: 119 DETKNNYIMSIVFTENHFGCAIADITTGDCFVTEIDRAQKLLDEINKFVPAEIICNDSFF 178 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 +S + L +G A + FD E + D++ + T++ G A+ A Sbjct: 179 VSGLDTDDLKNRMGICIHALDSWHFDQDTCERALKDHFQVGTLEGIGLKDYDSGMIASGA 238 Query: 264 IS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYS 321 + Y+ +TQ + + +DS+ R NLE++ TL +++ SLL +D + Sbjct: 239 LFLYLTETQKTAMSHMTSIRPYSADKYMLLDSSTRRNLELVETLREKKKRGSLLGVLDKT 298 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G R+ + PL D KI RLD+I QN +L +++ L D+ R + R+ Sbjct: 299 RTAMGARMLRSYVEQPLIDKEKIEERLDAIEELNQNALLREELREYLGPIYDLERLVGRI 358 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 P+D+ R ++ + L L+ L E++ + + LE +S + + Sbjct: 359 SYKSANPRDLVAFRSSLKM-LPYLRELLREFHSPLLMQIHERMDAM-EELENLVSKAIVE 416 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + P +DGG ++DG + +D R + + K+ + L+ + E T I+++KIK+N GY Sbjct: 417 EPPLAMKDGGIIKDGYNEEVDNYRRSKSEGKQWLTQLEARERERTGIRSMKIKYNRVFGY 476 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 ++EVT+S + +D +I +QT+SN R+ T EL +LEN I A + +E E Sbjct: 477 YLEVTNSFKDQVPED------YIRKQTLSNSERYVTPELKELENLILGAEDKLYALEYEL 530 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 F + + + + + ++ +A +D+ +LA++A+ NY RP I+ +K+GRHP+ Sbjct: 531 FCQVRDTVGREVVRIQKTAKAVATLDVLASLALVAERNNYTRPKINTQGVIDIKNGRHPV 590 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE+ ++ FIAND L D N ++ ++TGPNM GKST++RQ+ALIV+MAQ+GS Sbjct: 591 VEQMIENDM---FIANDTYL----DNNKKRISVITGPNMAGKSTYMRQSALIVLMAQLGS 643 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA A+IGIVD++F+RVG++D+LASG+STFMVEM E A+IL AT +S +ILDEIGRG Sbjct: 644 FVPADKANIGIVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATAKSLLILDEIGRG 703 Query: 742 TATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 T+T DGLSIAWA IE++ + L ATH+HELT+L + +N + V + + I Sbjct: 704 TSTFDGLSIAWAVIEHISNPKILGAKTLFATHYHELTELEGKISGVNNYCVAVKEKGDDI 763 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAY---------DILKTFEKLYHHNQKDM 850 +FL K++ G AD SYGIQV +LAG+P +V+ RA DI T L +KD Sbjct: 764 VFLRKIVKGGADRSYGIQVARLAGVPESVLDRAKELVEELVDSDITATVRDLTAPKKKD- 822 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + Y ++ ++ + D +++I+ L++ ++P+ AL LY ++ Sbjct: 823 SIVYDQVDMEQMSLFDTVQDDDIIQEIRELDVSNLTPMDALNFLYRMQ 870 >gi|210621373|ref|ZP_03292609.1| hypothetical protein CLOHIR_00552 [Clostridium hiranonis DSM 13275] gi|210154797|gb|EEA85803.1| hypothetical protein CLOHIR_00552 [Clostridium hiranonis DSM 13275] Length = 956 Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust. Identities = 303/829 (36%), Positives = 486/829 (58%), Gaps = 30/829 (3%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 +E + K TPMM+QY+E K D ++FYR+GDFYE+FFDDA++AS+ L I LT + L Sbjct: 1 MEVDRKKLTPMMKQYMETKDRYKDCILFYRLGDFYEMFFDDAIVASKTLEIALTGKACGL 60 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 + PMCGVP H+AN YI KL++ G+++AI EQ+E P +AK +V+R+V+R++TPG Sbjct: 61 EERAPMCGVPFHSANSYISKLVENGYKVAIGEQLEDPAKAK-----GIVKRDVIRVITPG 115 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREI 197 T+ + LL +NYLM++ R + ++++DISTG + N D+++ +I +++P EI Sbjct: 116 TVLDGSLLENKKNNYLMSIYRNKNMIGLSYVDISTGELNATYLNEDKIVEEIAKVNPSEI 175 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVE 256 I ++ LS + T+GN+ + + F D ES I DY+ ++T + Sbjct: 176 ILND--LSFIDKIRDIATVGNIYINES--FDDGMEEESIIFDYFPSEYIETLDLDNDGLI 231 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLL 315 K + A ++YI TQ + + + +D R+NLE+ +T+ G +++ SLL Sbjct: 232 KKSIAIILNYIYSTQKQITSNMSSINVYNSSEYMVLDMFTRTNLELTQTIRGGKKKGSLL 291 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T GGRL + + PL + KI RL+ I + IL + +ILK D+ Sbjct: 292 HVLDRTSTAMGGRLLRKYVEQPLINKEKIEYRLNIIEEINDDYILKEDLIEILKKIYDIE 351 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKND---LPEELRGAVEKLKKLPQSLE 432 R ++ + PK++ ++ I + +L ++N + +E +++ L+ + Q +E Sbjct: 352 RICGKIAFEKVTPKELINLKHSIEK-LPLLKETVENSSCVILKEYINSMDTLEDIYQLIE 410 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 ++ +D +DG ++ G + LDE R + II ++ K E T +K+LK Sbjct: 411 DSIK----EDPAITIKDGNIIKSGYNNELDELRDISKNGANIIKDIEAKEKERTGVKSLK 466 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 I N GY+IE+T ++ + D + +I +QT+SN RF T EL ++E +I NA Sbjct: 467 IGFNKVFGYYIEITKTNLAQANID----ESYIRKQTLSNAERFITPELKEIEEKILNAEE 522 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 IE E F + +A+ + + + ++A +D+ ALA A + Y +P I+N Sbjct: 523 KIKAIEYEIFTEIRSAVYKNINRIQEVAHIVANVDVYAALAETASQNGYVKPNINNENRL 582 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 +K+GRHP+VE + ++ F+ ND L + ++TGPNM GKST++RQ A+ Sbjct: 583 EIKNGRHPVVENIVGIEN---FVPNDTYLKT----GENTINIITGPNMSGKSTYMRQTAI 635 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 I +MA +GS+VPA YA I I+D++F+RVG++D+L+ G+STFMVEM E + IL AT++S Sbjct: 636 IALMAHIGSFVPAEYADIPIMDRIFTRVGASDDLSQGQSTFMVEMNEVSMILKNATDKSL 695 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 VILDEIGRGT+T DG+S+AW+ +EY+ + +C+ L ATH+HELTDL N ++ V Sbjct: 696 VILDEIGRGTSTYDGISLAWSIVEYIQKNIKCKTLFATHYHELTDLEDEFDEVKNYSIGV 755 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 + +IFL K+IP AD SYGI V KLA LP+ VI+R+ +IL EK Sbjct: 756 KEDGNDVIFLRKIIPQAADKSYGIYVAKLAKLPDEVINRSSEILSDLEK 804 >gi|269122808|ref|YP_003305385.1| DNA mismatch repair protein MutS [Streptobacillus moniliformis DSM 12112] gi|268314134|gb|ACZ00508.1| DNA mismatch repair protein MutS [Streptobacillus moniliformis DSM 12112] Length = 848 Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust. Identities = 324/885 (36%), Positives = 521/885 (58%), Gaps = 52/885 (5%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 STP+M+QY EIK + ++F+R+GDFYE+FF+DA +ASR LG+TLT R K G +IP+ Sbjct: 2 STPLMKQYNEIKKDYMEYILFFRLGDFYEMFFEDAEIASRVLGLTLTARNKEKGMNIPLA 61 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G+P H++ YI KL+ G+++AICEQ E+P +AK +V+R VV++VT GT+ + Sbjct: 62 GIPYHSSKPYIAKLVNAGYKVAICEQTENPKDAK-----GIVKREVVQIVTSGTMQDVDY 116 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 L +NYL + +A++++DI+TG FK+ + D LIS+I +I+P+EI+ ++ Sbjct: 117 LDSKSNNYLACIYYSNQNYAMSYLDITTGEFKVLECDEDNLISEIYKIEPKEILLTQS-- 174 Query: 205 SHAEYKSLFETLG-NVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 ++ S+ + L N+++ + +E + DY+NI ++D++G F + A A Sbjct: 175 LKEKFGSIIDKLDINISIVTK-----VNDAEKFLKDYFNIVSLDSYGIFGKKAMIDACAC 229 Query: 264 I-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYS 321 I Y+ Q N+ TI E + + I S+ NLEI++ + SLL +D Sbjct: 230 ILDYVLAMQFNNELTIRKIEVINKSKFVEISSSTLRNLEIVKNQRDKTTYGSLLWVLDKC 289 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 + G R + + SPL + +IN R D I + + I I+ +L + D+ R L ++ Sbjct: 290 KSSTGSRKLKQLLQSPLLELDEINKRYDDIEYLCKEIIKREEIRNLLDNVYDIERLLGKV 349 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 KDI +++ I S I +L+ PE+ + + Q + + ++L + Sbjct: 350 IFSNENGKDINALKNTIYSSFKIRDLW-----PEKFKNID---FNILQEIHTKIDNILLE 401 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 D P R+G ++ G ++ LDE R++ + I+ ++ + E+T IKNLKIK+NN GY Sbjct: 402 DAPFSVREGNMIKSGVNSELDELRNIMNNGTGILLEIESREREKTGIKNLKIKYNNIFGY 461 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 FIEV+ S+ +++ + +I +QT+SN R+ T E+ E++I N+ +E Sbjct: 462 FIEVSKSNMNMVP------ETYIRKQTLSNAERYITEEIKSYEDKIINSKAKITELEYII 515 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 F+ LS+ I E S +A IDI I+ AI A E NY RP N F +KD RHP+ Sbjct: 516 FKNLSSYIKEFKNVFIELSNTLAYIDILISFAITALENNYVRPNF-NEEYFEIKDARHPV 574 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VEK + + FI+N+ +DKN + +LTGPNM GKST+++Q ALI IMAQ+GS Sbjct: 575 VEKLIGDNT---FISNNVYF---DDKN--RFIILTGPNMSGKSTYMKQIALISIMAQIGS 626 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPAS A++ +VDK+ +R+G++D++ SG+STFMVEM E ASI+N AT S +ILDE+GRG Sbjct: 627 FVPASSANLNMVDKILTRIGASDDILSGQSTFMVEMSEVASIINSATTNSLIILDEVGRG 686 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 T+T DGL+IA + +Y+ E + + ATH+HELT+L + N ++V + N + F Sbjct: 687 TSTYDGLAIASSISKYIVENINAKSIFATHYHELTELENEYETIKNYRIEVEEKNGKVNF 746 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY-------Y 854 L ++ G AD SYGI+V KLAGLP T+I + +LK+FE + Q + L+ Y Sbjct: 747 LRTIVKGGADRSYGIEVAKLAGLPKTIIRESTKLLKSFEVEKKNGQ--ISLFDNFEYENY 804 Query: 855 PEIQT-KESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +I+ +E+ +NL N+KL +K++ ++++ M+P+ AL L +K Sbjct: 805 DKIEKLEETIDNL--NEKL--DKLRNVDINNMTPINALNLLMQIK 845 >gi|83815782|ref|YP_445727.1| DNA mismatch repair protein [Salinibacter ruber DSM 13855] gi|123528693|sp|Q2S254|MUTS_SALRD RecName: Full=DNA mismatch repair protein mutS gi|83757176|gb|ABC45289.1| DNA mismatch repair protein MutS [Salinibacter ruber DSM 13855] Length = 908 Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust. Identities = 308/827 (37%), Positives = 485/827 (58%), Gaps = 30/827 (3%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 + TP+MRQY +IK +P +++ +RMGDFYE F DDA SR LGITLT+R D+P Sbjct: 9 RGRTPLMRQYYKIKERHPKAILLFRMGDFYESFDDDAKTVSRLLGITLTERNNGDADDVP 68 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M G P H + ++ KLI+ G R+AICEQ+E ++ + +VV +VTPG D Sbjct: 69 MAGFPHHALDSHLPKLIRSGLRVAICEQVEDADDSSGKVVDR----DVVEVVTPGVSFHD 124 Query: 143 QLLSPTDSNYLMAV----ARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREII 198 QLL+P SN+L A+ R + ++ID +TG F ++ + D+L I + P E+I Sbjct: 125 QLLNPKQSNFLAALHFGTGRDKDRIGFSFIDATTGEFSVTEAGLDQLQDLIQTVAPSEVI 184 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 +++ + + L E V Q + F + + + +++ ++ FG + Sbjct: 185 VDKRKTERLQ-QHLREVPFTV-TEQEDWVFKYDFAYQTLLEHFETHSLKGFGVDDMDLGV 242 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLK 316 A+ AA+ Y+ +TQ P + +R + +D + NLE+++++ E +L+ Sbjct: 243 VASGAALHYLGETQKGALPHVRKIKRYSKDEHIALDPETKRNLELVQSIQDDGHEGTLVS 302 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D + T GGR + PL D +I RLD++ + + L + +++ L D+ R Sbjct: 303 ILDETETPMGGRRLRAWLVRPLRDVGRIRHRLDAVEACVDDRTLRDDLREELNQMGDLER 362 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEK-LKKLPQSLEKTL 435 ++ GR P D+ I+ +R N+L L D + GA+E L+ P+ +++ + Sbjct: 363 LAGKVATGRAAPGDLIAIKHTLRRLPNVLGLLTDAD--SDALGAIEDDLRSCPEMVDR-I 419 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 S L DD P +GG +RDG LDE R++ + K +A+L+ + +E T I +LK+ Sbjct: 420 QSALVDDPPAKISEGGLIRDGYSEELDELRTIAQEGKDWVANLETEESERTDIPSLKVGF 479 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+IEVT++ A + +D +I +QT+ + R+ T EL ++E +I A Sbjct: 480 NKVFGYYIEVTNTHADKVPED------YIRKQTLVDSERYVTPELKEMEEKILTAEEKIE 533 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E E F L + I +Q+ L ++++A +D LA +A++ +Y RP +D+ ++ Sbjct: 534 TLEQELFNELRSQIAQQTGILQENAELLAHLDCFAGLAEVAEQHDYTRPSVDDGLTIDIE 593 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 +GRHP+VE+TL PFI ND L P+D+ ++ ++TGPNM GKS LRQ LIV+ Sbjct: 594 EGRHPVVEQTLP--PGDPFIPNDMALD-PDDE---QVLIITGPNMAGKSVALRQVGLIVL 647 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +AQ+GS+VPA A IG+VD++F+RVG++DNLA+G STF+VEM E A+ILN AT +S ++ Sbjct: 648 LAQVGSFVPAEAAQIGVVDRIFTRVGASDNLAAGESTFLVEMNEAANILNNATARSLILF 707 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQVS 793 DE+GRGT+T DGLSIAWA +EYLHE R L ATH+HEL ++ L+R HN +QVS Sbjct: 708 DEVGRGTSTFDGLSIAWAIVEYLHERPEVAARTLFATHYHELNAMADRLERVHNYRIQVS 767 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + I+FL K+IPG ADHSYGI+V K+AGLP+ VI+RA ++L+ E Sbjct: 768 EHEGEIVFLRKLIPGGADHSYGIEVAKMAGLPDAVIARAREVLQNLE 814 >gi|291546135|emb|CBL19243.1| DNA mismatch repair protein MutS [Ruminococcus sp. SR1/5] Length = 872 Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust. Identities = 315/887 (35%), Positives = 511/887 (57%), Gaps = 38/887 (4%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM++Y++ K D ++FYR+GDFYE+FFDDAL AS+ L ITLT + L + PMCGVP Sbjct: 1 MMKEYVKTKEEYSDCILFYRLGDFYEMFFDDALTASKELEITLTGKDCGLEERAPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A YI +LI+ G+++AICEQ+E P +AK LV+R VVR+VTPGT + L Sbjct: 61 FHAAETYINRLIEKGYKVAICEQVEDPKKAK-----GLVKREVVRIVTPGTTLDTMSLDE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEK-ELS 205 + +NYLM++ I + A DI+TG F +L+ +I + P EII ++ LS Sbjct: 116 SKNNYLMSIVSIGEHFGCAIADITTGDCFLTELDKPQKLLDEINKFTPAEIICNDAFLLS 175 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAIS 265 + L LG A +FD + + + +++++ ++ G A+ A+ Sbjct: 176 GVDVADLKGRLGICVFALDPWYFDDQLCQKTLKEHFHVGNLEGLGIGDYDSGIIASGALF 235 Query: 266 -YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT 323 Y+K+TQ + + + IDS++R NLE++ T+ +++ SLL +D + T Sbjct: 236 LYLKETQKTALSHMASIRPYSAEKYMLIDSSSRRNLELVETMREKQKRGSLLWVLDKTKT 295 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G R + PL D+ +I RL ++ P+ + I++ L D+ R +SR+ Sbjct: 296 AMGARTLRSYVEQPLIDAEEIEKRLGALEELNAKPMDRDEIREYLNPIYDLERLISRISY 355 Query: 384 GRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 P+D+ + I + K+ L ++ ++ L + + +++ D Sbjct: 356 KSANPRDLVSFASSLEMLPYIKQILAEFKSPLLMQINEDMDPLSDITDLIRNSIA----D 411 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 D P ++DGG +R+G + +D+ R R K+ ++ L+ + E T IK+LKIK+N GY Sbjct: 412 DPPLAQKDGGIIREGYNEDVDKFRRSRTDGKKWLSELEARERERTGIKSLKIKYNRVFGY 471 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +EVT++ KDL +D +I +QT++N R+ T EL DLE+ I A + +E E Sbjct: 472 SLEVTNTF-----KDLVPED-YIRKQTLTNAERYITQELKDLEDLILGAEDKLYALEFEL 525 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 F + + + + + ++ +A +D+ +LA++A+ N+ RP I+ + +++GRHP+ Sbjct: 526 FSDIRDQVGAEVVRIQRTAKAVAALDVFASLALVAQRNNFVRPKINETGLIDIRNGRHPV 585 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE+ ++ FI ND L D + ++ ++TGPNM GKST++RQ ALIV+MAQ+GS Sbjct: 586 VEQMIENDM---FIPNDTYL----DNHKKRISIITGPNMAGKSTYMRQTALIVLMAQIGS 638 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA A+IG+VD++F+RVG++D+LASG+STFMVEM E A+IL AT++S +ILDEIGRG Sbjct: 639 FVPADSANIGVVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSRSLLILDEIGRG 698 Query: 742 TATLDGLSIAWATIEYLHETNRC--RGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 T+T DGLSIAWA IE++ T C + L ATH+HELT+L L +N + V + + I Sbjct: 699 TSTFDGLSIAWAVIEHISNTKLCGAKTLFATHYHELTELEGKLSGVNNYCIAVKEKGDDI 758 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--------KLYHHNQKDMR 851 +FL K++ G AD SYGIQV KLAG+P++VI RA ++++ K +K + Sbjct: 759 VFLRKIVKGGADKSYGIQVAKLAGVPDSVIQRAKELVEELSDADITAAVKDLTAPKKKQK 818 Query: 852 LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + Y ++ + + D +E+IK L + ++P+ AL LY ++ Sbjct: 819 ITYDQLDMAQMSLFDTVQDNDIIEEIKNLEIGNLTPMEALNILYNLQ 865 >gi|220929119|ref|YP_002506028.1| DNA mismatch repair protein MutS [Clostridium cellulolyticum H10] gi|254766623|sp|B8I2Q5|MUTS_CLOCE RecName: Full=DNA mismatch repair protein mutS gi|219999447|gb|ACL76048.1| DNA mismatch repair protein MutS [Clostridium cellulolyticum H10] Length = 873 Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust. Identities = 316/827 (38%), Positives = 490/827 (59%), Gaps = 30/827 (3%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPMM+QY++IK D ++F+R+GDFYE+FF DA LASR L ITLT R L + Sbjct: 1 MGTVTPMMQQYLDIKEQYKDCILFFRLGDFYEMFFSDAELASRELEITLTGRDCGLEERA 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H A++YI +L+ G+++AICEQ+E P AK +V+R+VV++VTPGT+T+ Sbjct: 61 PMCGVPFHAADNYIARLVSKGYKVAICEQVEDPALAK-----GIVKRDVVKVVTPGTVTD 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIF---KISTSN-HDRLISDIMRIDPREI 197 +L +NYLM+V + + +A +DI+TG F +I+ N +L+ +I + P EI Sbjct: 116 ITMLDERKNNYLMSVYKNGNFYGLASVDITTGDFYATRITWGNTRGKLLDEIAKYLPSEI 175 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 I + + S E S + N V+ F++ S +A+++ T++ + Sbjct: 176 IVNNELNSDNELTSEIKQRFNTYVSTFEETSFEYGNSMDILANHFEKQTLNI--QEYDIA 233 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLL 315 A+ A + Y++ TQ VN I ++ + +D+++R NLE+ T+ S++ SLL Sbjct: 234 VNASGALLKYLESTQKVNLSHIQKFNSYALEEYMILDASSRRNLELTETMREKSKKGSLL 293 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D ++T GGRL + I PL + I+ RLD++ ++ +++LK D+ Sbjct: 294 WVLDKTMTSMGGRLLRKWIEQPLINHGDISLRLDAVEELKNKFMVRVEARELLKRVYDIE 353 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R + ++ +G +D+ +++ + I + L E ++ E+L L Sbjct: 354 RLMGKVVLGSVNCRDLIALKNSM-CQIPYIKSLLNGFEAEYIKNCGEQLDCLEDVCNLIE 412 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 S++ D+ P ++GG ++DG + +D+ R Q K IA+L+ E+T IKNLK+ Sbjct: 413 VSII-DEPPVTIKEGGIIKDGYNPEVDKLRMASIQGKDWIAALEASQREKTGIKNLKVGF 471 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+IEVT S S++ ++ +I +QT+SN R+ T EL ++E+ I A + Sbjct: 472 NRVFGYYIEVTKSYFSLVPEE------YIRKQTLSNCERYITPELKEIEDTILGAEEKII 525 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E F + I EQ + + ++ +A ID+ +LA +A + YC+P + S + Sbjct: 526 QLEYSLFVEIKEKIAEQLSRIKSTARALAEIDVLASLAEVADREGYCKPEVSLSDKIEII 585 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 +GRHP+VEK + F+ ND L D+ L ++TGPNM GKST++RQ ALIV+ Sbjct: 586 EGRHPVVEKMTDKSG---FVPNDTVLDMEEDR----LAIITGPNMAGKSTYMRQTALIVL 638 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+GS+VPA+ A IG+VD++F+RVG++D+LASG+STFMVEM E A+IL AT +S ++L Sbjct: 639 MAQIGSFVPAATAKIGLVDRIFTRVGASDDLASGQSTFMVEMSEVANILINATKRSLLVL 698 Query: 736 DEIGRGTATLDGLSIAWATIEYL--HETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 DEIGRGT+T DGLSIAWA IEY+ E CR L ATH+HELT+L L N + V Sbjct: 699 DEIGRGTSTFDGLSIAWAVIEYIVNKEQLGCRTLFATHYHELTELEGKLPGIKNYCITVK 758 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + E +IFL K+I G AD SYGIQV KLAG+P +VI RA +IL + Sbjct: 759 EKGEDVIFLRKIIRGGADGSYGIQVAKLAGVPQSVIDRAKEILSNLD 805 >gi|153814910|ref|ZP_01967578.1| hypothetical protein RUMTOR_01125 [Ruminococcus torques ATCC 27756] gi|317500422|ref|ZP_07958646.1| DNA mismatch repair protein MutS [Lachnospiraceae bacterium 8_1_57FAA] gi|145847941|gb|EDK24859.1| hypothetical protein RUMTOR_01125 [Ruminococcus torques ATCC 27756] gi|316898177|gb|EFV20224.1| DNA mismatch repair protein MutS [Lachnospiraceae bacterium 8_1_57FAA] Length = 877 Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust. Identities = 318/901 (35%), Positives = 516/901 (57%), Gaps = 61/901 (6%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD--IPMCG 85 MM+QY+E KS D ++FYR+GDFYE+FF+DAL ASR L ITLT GK+ G++ PMCG Sbjct: 1 MMKQYMETKSQYQDCILFYRLGDFYEMFFEDALTASRELEITLT--GKNCGQEEKAPMCG 58 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H Y+ +L+ G+++AICEQ+E P + K +V+R VVR+VTPGT + Q L Sbjct: 59 VPYHAVEGYLNRLVAKGYKVAICEQVEDP-----KTTKGIVKREVVRIVTPGTNLDTQAL 113 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEK-E 203 T +NY+M + I + ++ DISTG F + +L+ +I R P EII +E Sbjct: 114 DETKNNYIMCIVYIADRYGVSVADISTGDYFVTEIPDSAKLLDEIYRFSPSEIICNEAFY 173 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAA 262 +S + + + LG + + +FD + ++ +++ +++ G + +A A Sbjct: 174 MSGVDMDGMKDRLGITIYSLESWYFDDEVCRKKLLEHFEVSSFAGLGLADYDCGIISAGA 233 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYS 321 + Y+ +TQ + + + + IDS+ R NLE+ TL +++ SLL +D + Sbjct: 234 LLQYLLETQKNSLSNLTHITPYAAGKFMMIDSSTRRNLELCETLREKQKRGSLLWVLDKT 293 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G R + + PL D T+I RLD++ + I I++ L D+ R ++++ Sbjct: 294 KTAMGARTLRKYVEQPLIDKTEIIRRLDAVQELKEQAISREEIREYLSPVYDLERLITKI 353 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 G P+D+ R + +L + +K +L ++L ++ L+ L ++K + Sbjct: 354 AYGSANPRDLTAFRSSLEMLPALLYILQEMKAELLKDLAVDLDPLEDLCILVKKAIR--- 410 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 +D P ++G + DG + +D+ R + K +A L+ E+T IKNLKIK+N Sbjct: 411 -EDPPIAMKEGNIINDGYNEEVDKLRRAKSDGKDWLAKLENDEREKTGIKNLKIKYNKVF 469 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY++EVT+S ++ + + +QT++N R+ T EL +LE+ I A + +E Sbjct: 470 GYYLEVTNSYKEMVP------EYYTRKQTLANAERYITPELKELEDMILGAEDKLYALEY 523 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E + + + I Q E + ++ +A +D +LA++A+ NY RP I+ +K+GRH Sbjct: 524 ELYSEVRDLIASQIERIQKTAKAVAALDAFASLALVAERNNYVRPKINEKGVIDIKEGRH 583 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE+ + + FI+ND L D ++ ++TGPNM GKST++RQ ALI +MAQ+ Sbjct: 584 PVVERMIPNEM---FISNDTYL----DDKKHRISIITGPNMAGKSTYMRQTALIALMAQI 636 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPA A+IG+ D++F+RVG++D+LASG+STFMVEM E A+IL AT++S +ILDEIG Sbjct: 637 GSFVPAKSANIGLSDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSKSLLILDEIG 696 Query: 740 RGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 RGT+T DGLSIAWA IEY+ ++ + L ATH+HELT+L + +N + V + + Sbjct: 697 RGTSTFDGLSIAWAVIEYISDSRLLGAKTLFATHYHELTELEGKIDNVNNYCIAVKEKGD 756 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 I+FL K++ G AD SYGIQV KLAG+P VI RA +I++ + +D+ EI Sbjct: 757 DIVFLRKIVKGGADKSYGIQVAKLAGVPELVIGRAKEIVEEL------SDEDITARVSEI 810 Query: 858 QTKE--------------------SKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAV 897 +KE S + K+D + +E++K L++ M+P+ AL T+Y + Sbjct: 811 ASKERVVKKKPKVKKYDDVDIAQMSLFDTVKDDDV-LEELKNLDVGNMTPIDALNTIYRL 869 Query: 898 K 898 + Sbjct: 870 Q 870 >gi|331084834|ref|ZP_08333922.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410928|gb|EGG90350.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium 9_1_43BFAA] Length = 885 Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust. Identities = 321/899 (35%), Positives = 516/899 (57%), Gaps = 55/899 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+E K D ++FYR+GDFYE+FFDDA+ AS+ L ITLT + L + PMCG Sbjct: 8 TPMMQQYMETKKQYSDCILFYRLGDFYEMFFDDAITASKELEITLTGKNCGLEERAPMCG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+ + Y+ +L++ G+++AICEQ+E P +AK +V+R VVR+VT GT Q L Sbjct: 68 VPYHSVDSYLNRLVEKGYKVAICEQVEDPQQAK-----GIVKREVVRVVTAGTNMNAQAL 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREIIFSEK-E 203 T +NY+M + I + +A D+STG + ++ + R L+ +I + P EII +E Sbjct: 123 DETKNNYIMCIVYIADRYGLAVADVSTGDYFVTELDSGRKLLDEIHKFSPSEIICNESFY 182 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAA 262 +S + L LG + + FFD + + ++++ +++ G AA A Sbjct: 183 MSGLDLDDLRHRLGMMIYSIDTHFFDDEMCARILKEHFHAASLEGMGLGDYNCGVIAAGA 242 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYS 321 + Y+ +TQ + I + + +DS++R NLE+ TL +++ SLL +D + Sbjct: 243 LLKYLYETQKTSLSHITHITGYATGRYMLLDSSSRRNLELCETLREKQKRGSLLWVLDKT 302 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G R+ I PL D +I RL+++ I I++ L D+ R +SR+ Sbjct: 303 KTAMGARMLRSYIEQPLIDRHEIEQRLEAVEELKDKAISREEIREYLSPVYDLERLISRV 362 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEEL-RGAVEKLKKLPQSLEKTLSSMLS 440 P+D+ R+ + +I ++ ++ EEL + E+L L + L + L+ + Sbjct: 363 TYQSANPRDLISFRNSLEMLPHIK--YILTEMHEELLQQICEELDTL-EDLYQLLNESIM 419 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 ++ P ++GG ++DG DA +D R + + K +A L+ + E+T I+NLK+K+N G Sbjct: 420 EEPPLAMKEGGIIKDGYDADVDMLRQAKTEGKNWLAQLEEEEREKTGIRNLKVKYNKVFG 479 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y++EVT++ ++ D + +QT++N RF T L +LE+ I A + +E Sbjct: 480 YYLEVTNAYKELVP------DYYTRKQTLANAERFITPRLKELEDTILGAEDKLYALEYT 533 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 + + + I + + ++ +A ID+ +LA++A+ NY RP I+ +K GRHP Sbjct: 534 LYCKVRDRIASEVLRVQKTAKAVAKIDVFTSLALVAERNNYVRPKINEKGLIDIKGGRHP 593 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK FIAND L D ++ ++TGPNM GKST++RQ+ALIV+MAQ+G Sbjct: 594 VVEK---MTPDNMFIANDTLL----DDKKNRVSIITGPNMAGKSTYMRQSALIVLMAQIG 646 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA A+IGI D++F+RVG++D+LASG+STFMVEM E A+IL AT+ S +ILDEIGR Sbjct: 647 SFVPADSANIGICDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSSSLLILDEIGR 706 Query: 741 GTATLDGLSIAWATIEYLHETNR----CRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 GT+T DGLSIAWA +E H +N+ + L ATH+HELT+L L +N + V + Sbjct: 707 GTSTFDGLSIAWAVVE--HISNKKLLGAKTLFATHYHELTELEGKLDSVNNYCIAVKEQG 764 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 + I+FL K++ G AD SYGIQV KLAG+P +VI+RA +I+ ++ D+ E Sbjct: 765 DDIVFLRKIVKGGADKSYGIQVAKLAGVPESVIARAKEIVGEL------SEADITTKVRE 818 Query: 857 I--QTKESKNNLSKNDKL---------------FVEKIKCLNLDEMSPLTALKTLYAVK 898 I Q E+K K D++ +E++K +++ ++P+ AL T+Y ++ Sbjct: 819 ISAQGSETKARQKKYDEVDLAQISLFDTVKDDDVLEELKEIDVSNLTPMDALNTIYRLQ 877 >gi|257467997|ref|ZP_05632093.1| DNA mismatch repair protein MutS [Fusobacterium ulcerans ATCC 49185] gi|317062283|ref|ZP_07926768.1| DNA mismatch repair protein [Fusobacterium ulcerans ATCC 49185] gi|313687959|gb|EFS24794.1| DNA mismatch repair protein [Fusobacterium ulcerans ATCC 49185] Length = 874 Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust. Identities = 323/903 (35%), Positives = 526/903 (58%), Gaps = 61/903 (6%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + TP+M QY EIK N D+L+F+R+GDFYE+FFDDA++AS+ LG+TLT R + G+D+ Sbjct: 1 MAGDTPLMSQYKEIKEQNKDNLLFFRLGDFYEMFFDDAVIASKELGLTLTSRNREKGQDV 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 P+ GVP H+ + YI KL+ G+++AICEQ+E P + K +V+R VVR++TPGT+ + Sbjct: 61 PLAGVPYHSVSSYIAKLVNKGYKVAICEQVEDP-----KSVKGIVKREVVRVITPGTVID 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD----RLISDIMRIDPREI 197 L +NYLM + AIA++DI+TG FK S + +L+ +I + P+EI Sbjct: 116 TDYLDEKSNNYLMGIKIDGNRGAIAYVDITTGEFKASELEGEDIIFKLLGEINKTAPKEI 175 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVE 256 + E+ ++ +Y + + +++ + + E + DY+ + ++++FG ++ Sbjct: 176 LLEER--TYDKYYNELKKHNSLSDVNISKITEKRKCEDYLKDYFKVISLESFGLKDKKMA 233 Query: 257 KTAAAAAISYIKKTQM-----VNKPTIGYPEREDIQSTLFIDSAARSNLEIL---RTLSG 308 T +A ++Y+ + Q VN I Y E+I ++ + NL+I+ R +G Sbjct: 234 VTISATVLNYVAELQKGKELPVN--NILYTSSENIME---LNITTQKNLDIVDNYREKNG 288 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKIL 368 + +LL +D +T G RL + I +PL D KIN R I FFI+N +L +++ L Sbjct: 289 A--GTLLWVMDECMTSMGSRLLKKFIKNPLLDIEKINERQKDIAFFIENVLLREEVRERL 346 Query: 369 KSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP 428 K+ D+ R + +L + +D+ ++ I++ + IL L N + V+ L + Sbjct: 347 KNIYDIERIIGKLVLETENGRDLISLKISIKNSLEILKLLQGNSI---FSIEVKTLIDIY 403 Query: 429 QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 +EKT+ D+ P R+GG +R G + LDE L K I ++ + E T I Sbjct: 404 NLIEKTIV----DEPPFSVREGGIIRQGYNEMLDELHGLSKDGKDYILEIENRERERTGI 459 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 K LKIK+N GYFIEVT +++ ++ D +I +QT++N R+ +L + E ++ Sbjct: 460 KGLKIKYNKVFGYFIEVTRANSHLVPAD------YIRKQTLANAERYIVPDLKEYEEKVL 513 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 NA + +E + F+ +S I L + + IA +D+ LA +A + +Y +P + Sbjct: 514 NAKDKIENLEYQLFKEVSYEIKSHKGILQDLAYKIAYLDVMSNLAHIAIKNSYIQPEMHG 573 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 + GRHPIVEK + S ++ N+ L ++ ++ +LTGPNM GKST+++ Sbjct: 574 GKEIEIIAGRHPIVEKLI---PSGEYVKNNIVLD-----DNKEMIILTGPNMSGKSTYMK 625 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q ALI+IMA MGSYVPA+YA IG+VDK+F+R+G++D+L +G+STFM+EM E A+I+N AT Sbjct: 626 QVALIIIMAHMGSYVPANYAKIGLVDKIFTRIGASDDLLTGQSTFMLEMSEVANIVNSAT 685 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA 788 ++SF+ILDEIGRGT+T DG+SIA A EY+HE + + ATH+HELT L L R N Sbjct: 686 DRSFIILDEIGRGTSTFDGISIATAITEYIHERIGAKTIFATHYHELTQLEDKLDRAENY 745 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 ++V ++++ I+FL +++ G AD SYGI+V +LAGLP ++ R+ +LK E +K Sbjct: 746 RIEVKENDKEIVFLREIVKGGADKSYGIEVARLAGLPKEILDRSKSVLKNLEDRKQIIEK 805 Query: 849 DMR-----LY---YPEIQTKESKNN-----LSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 ++ L+ E +E KNN L+K K+ + ++ L+ + M+PL AL L Sbjct: 806 KLKGEQLILFGTPQKEEPVEEDKNNLKGKELTKEQKIVMRVLEELDPNGMTPLEALLKLN 865 Query: 896 AVK 898 +K Sbjct: 866 ELK 868 >gi|153004969|ref|YP_001379294.1| DNA mismatch repair protein MutS [Anaeromyxobacter sp. Fw109-5] gi|189030440|sp|A7HC64|MUTS_ANADF RecName: Full=DNA mismatch repair protein mutS gi|152028542|gb|ABS26310.1| DNA mismatch repair protein MutS [Anaeromyxobacter sp. Fw109-5] Length = 882 Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust. Identities = 324/832 (38%), Positives = 478/832 (57%), Gaps = 33/832 (3%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 + TPMMRQY+E K+ PD+L+F+R+GDFYELFF+DAL AS L ITLT R K G D Sbjct: 3 EIAQPTPMMRQYLETKARYPDALLFFRLGDFYELFFEDALTASEALQITLTARAK--GDD 60 Query: 81 -IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 +PMCGVP H A Y+ +L++ G ++AIC+Q+E P G ++V+R V R+VTPG + Sbjct: 61 KVPMCGVPHHAARGYVARLLEKGFKVAICDQVEEP------GKSAIVKREVTRVVTPGMV 114 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD-RLISDIMRIDPREII 198 +DQ+L P +++YL VA +A +D STG + D R + ++ R RE++ Sbjct: 115 FDDQVLDPREASYLGVVALAEGRAGLALLDASTGQLQCGEVPDDARAVDELRRAGVRELV 174 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ-VEK 257 A + + +G A +P D+ ++ R+ + + ++D FG + + Sbjct: 175 LPLGA-DAARAERIERAVGVPAARRPAA--DYERADDRLRRHLGVASLDGFGVGGEPLGL 231 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLK 316 AAAAA++Y+ TQ + R + L +D A R+NLE+ RTL+G R++ SLL Sbjct: 232 AAAAAALAYLADTQRATPRHVDRVSRLRTEDVLLLDEATRTNLELERTLNGGRKKGSLLA 291 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D S+T GGR AE + PLT+ I+ RLD++ + + L+ D R Sbjct: 292 LLDRSVTAPGGRRLAEWLRYPLTELAPIHARLDAVEELAGASVAREDLAAALRPVADAER 351 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 LSRL +G+G +D+ + + + + L L LR A E + L + L L Sbjct: 352 LLSRLVLGQGNARDLRALAGALLA-LPALAELLGGRAAALLRDAGEGTRGL-EELAAHLD 409 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 ++++ P R+GG +R G LDE ++ + K IA L+ + E T I +LK++ N Sbjct: 410 RAVAEEPPATLREGGIIRRGFSPELDEIVAVAEDGKGFIARLEAREKERTGIGSLKVRFN 469 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY++EVT ++ + D E RQT RF T EL E + A + Sbjct: 470 KVFGYYLEVTKANLHAVPSDYE------RRQTTVGGERFVTPELKRFEETVLTAEERRIA 523 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E FE L + E + + A+ +A D +ALA +A E+ YCRP +D S + D Sbjct: 524 VEGRLFEELRQRVAEAAPRIRTAADAVATADALLALARVAAERGYCRPEVDGSEVLEIVD 583 Query: 617 GRHPIVEKTLKQQSSKPFIANDC------DLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 GRHP+VE L + + F+ ND L C + G L ++TGPNM GKST +RQ Sbjct: 584 GRHPVVEAVLPEGPAG-FVPNDVLVASRGALEC---ERLGALHVITGPNMAGKSTVMRQA 639 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 AL+ ++AQMG++VPA A +GIVD++F+RVG++D+LA GRSTFMVEM ETA+IL+ AT + Sbjct: 640 ALVTLLAQMGAFVPARKARVGIVDRIFTRVGASDDLARGRSTFMVEMTETAAILHNATRR 699 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V+LDEIGRGT+T DG+SIAWA E+LH+ CR L ATH+HEL DL++ N T+ Sbjct: 700 SLVVLDEIGRGTSTFDGVSIAWAVAEHLHDQVGCRTLFATHYHELQDLARERPAVRNLTV 759 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 V + + ++FL K++ G A SYGI+V KLAGLP V++RA +ILK E L Sbjct: 760 AVREVGDRVVFLRKLVQGGASRSYGIEVAKLAGLPAEVLARAREILKNLEAL 811 >gi|288932103|ref|YP_003436163.1| DNA mismatch repair protein MutS [Ferroglobus placidus DSM 10642] gi|288894351|gb|ADC65888.1| DNA mismatch repair protein MutS [Ferroglobus placidus DSM 10642] Length = 820 Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust. Identities = 307/815 (37%), Positives = 475/815 (58%), Gaps = 45/815 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY IK D+L+F+R+GDFYELF DDA +AS+ LGI LT R K MCG Sbjct: 6 TPMMEQYYRIKQKYKDALLFFRVGDFYELFDDDARVASKELGIVLTSRDKKHA----MCG 61 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A YI+KLI+ G+++AICEQ+E P K LVRR VVR++TPGT+ E++LL Sbjct: 62 VPHHAAYSYIKKLIEKGYKVAICEQVEEP------TGKKLVRREVVRVITPGTVVEEELL 115 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 + T+SNYLMA+ + R + A+A++D+STG F S N D I ++++ P E + E Sbjct: 116 T-TESNYLMALFK-REKVALAFLDVSTGEFFVTSVKNVDEAICEVLKYSPVECLIPESFE 173 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 E + L + + + Q F+ S + D N ++ S+ E A A + Sbjct: 174 EVEELEKLVKNVRRIEDEQ----FNLKRSLEVLKDVANFQALE----LSEEEILACGAVL 225 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSIT 323 +Y K + + +KP + + E + +DS NLEI R L G R +LL ID ++T Sbjct: 226 NYAKNSLLFSKPALKLQKLER-SEYMVLDSTTIKNLEIFRNLVDGGRRGTLLDVIDKTVT 284 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL + + PL D T+I RLD++ + + +++ L+ D+ R ++RL++ Sbjct: 285 AMGSRLLKKWLQRPLLDVTEIERRLDAVEELKEKSFVRRVLRETLEDVYDLERIITRLEL 344 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 G+ PKD+ +++ +++ I ++ +L + +++L +EK + +D Sbjct: 345 GKANPKDLVALKNSLKAVGKIKKFDFQSKKLRDLVYGMNPMEELCSLIEKAIV----EDP 400 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P +DGG +R+G D LDE R + + + I L+ + + T I NL++ +NN GY+I Sbjct: 401 PANVKDGGVIREGFDEELDELRKAKKEQEEFIKRLEERERKRTGIDNLRVGYNNVFGYYI 460 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 E+ S A L + +I +QT+ N RFT EL D E +I ++E E FE Sbjct: 461 EIPKSKAKNLPR------YYIRKQTLVNAERFTIPELKDREEKILAYEERIRILEQEIFE 514 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 + ++ +E + ++++ +A +D+ +LA +A NY RP ++ + I++DGRHP VE Sbjct: 515 RIRREVVRHAEKVKDSAERVAELDVLCSLAEVATLYNYTRPKVNEGFDIIIRDGRHPAVE 574 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 T K F+ ND +L+ + ++ ++TGPNM GKST+LRQ ALI I+AQ+GS+V Sbjct: 575 TTTK------FVPNDVNLT-----ENSRILIITGPNMAGKSTYLRQVALITILAQIGSFV 623 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PASYA +GIVDK+F+R+G D++ GRSTFMVEM+E ILN AT +S ++LDE+G+ T Sbjct: 624 PASYAVVGIVDKIFTRIGLVDDITRGRSTFMVEMLEIGRILNNATKRSLILLDEVGKSTG 683 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T +GLS+AWA IEYLHE + L ATH+HEL+ L L N ++ + N + F Sbjct: 684 TKEGLSLAWAIIEYLHELG-AKVLFATHYHELSKLENELAGVKNYHFRLKEENGKVEFDR 742 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKT 838 K+ G + SYGI++ ++A LP V+ RAY+IL + Sbjct: 743 KIRRGFSKESYGIKIAEMANLPKRVVERAYEILNS 777 >gi|28210987|ref|NP_781931.1| DNA mismatch repair protein MutS [Clostridium tetani E88] gi|44888200|sp|Q895H2|MUTS_CLOTE RecName: Full=DNA mismatch repair protein mutS gi|28203426|gb|AAO35868.1| DNA mismatch repair protein mutS [Clostridium tetani E88] Length = 881 Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust. Identities = 316/856 (36%), Positives = 513/856 (59%), Gaps = 48/856 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+E+K D ++F+R+GDFYE+FF+DA AS+ L + LT R L K PMCG Sbjct: 4 TPMMQQYLEVKEKCKDCILFFRLGDFYEMFFEDAETASKELELVLTGRDCGLSKRAPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H+A++YI +L+ G++IAICEQ+E P AK +V+R++V++VTPGT ++ L Sbjct: 64 IPYHSASNYINRLVSKGYKIAICEQLEDPSAAK-----GIVKRDIVKIVTPGTYSDSNFL 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREIIFSEKE 203 + T +NY+M++ A+ + DISTG F ++ + D+ ++ +I + DP E++ + K+ Sbjct: 119 NETKNNYIMSLYIEDKSVAMCFCDISTGDFFATSHSLDKSIILDEISKFDPSELLLN-KD 177 Query: 204 LSH---AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 + E K+ F ++ + + F D+++ E + +D+ + +S V Sbjct: 178 IDKNILKEIKNRFTI--SITNLEKDYFKDYNLLEGQFSDF-------SKEEYSLVLIKCG 228 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 + YI +TQ ++ I + +I L +D +R NLEI T+ SR+ SLL +D Sbjct: 229 NGLLKYILETQKMSLGHIDCFKNYNIVDYLSMDINSRRNLEITETIRDKSRKGSLLWVLD 288 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 T G RL + PL + KI+ RL+++ + N L ++ LK D+ R + Sbjct: 289 KCSTAMGARLIRNWVEQPLINKEKIDKRLNAVEELVLNISLHEDLKDALKDIYDIQRIVG 348 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 ++ K++ +++ I I ++ L+ DL +++ +++LK + + LE S Sbjct: 349 KISSKNVNAKELLSLKNSIEKLPYIKDILSKLEADLFKDMLSNLDELKDIYELLE----S 404 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + D+ P +DG +++G + +DE R + K IA+L+ E T IK+LK+ +N Sbjct: 405 SIMDNPPITIKDGNLIKNGFNKEIDELRMAKSHGKEWIANLESSEREFTGIKSLKVGYNK 464 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GYFIEVT S+ S + + R++ +QT+SN R+ T EL ++E++I A + + Sbjct: 465 VFGYFIEVTKSNISSV-----PEGRYVRKQTLSNCERYITPELKEMEDKILGAEEKLISL 519 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E E F + N+I + + + ++ ++AI+D +L+ +A E NY +P I + I+KDG Sbjct: 520 EYEVFVSIRNSIEKDIDRMKISANIVAILDCLSSLSTVALENNYSKPKILEGNDIIIKDG 579 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VEK + S F+AND + D ++ L+TGPNM GKST++RQ ALI IMA Sbjct: 580 RHPVVEKMIPTGS---FVANDTTM----DTEDNQMLLITGPNMAGKSTYMRQVALITIMA 632 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+GS+VPA A I + DK+F+R+G++D+L++G+STFMVEM E ++IL AT++S +ILDE Sbjct: 633 QIGSFVPAKEASISLCDKIFTRIGASDDLSAGKSTFMVEMWEVSNILKNATSKSLIILDE 692 Query: 738 IGRGTATLDGLSIAWATIEYL--HETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 +GRGT+T DGLSIAWA IEY+ ++ R + L ATH+HEL L +K N ++ V + Sbjct: 693 VGRGTSTFDGLSIAWAVIEYICNNKNLRSKTLFATHYHELIQLENKIKGVKNYSVSVKEM 752 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 ++ I+FL K+I G AD SYGI+V KLAGLP VI RA +IL + E+ KD ++ Sbjct: 753 DKDIVFLRKIIEGGADQSYGIEVAKLAGLPEDVIIRAKEILNSIEQ-----NKDNKIELD 807 Query: 856 EIQTKESKNNLSKNDK 871 +I KE+KN++ K +K Sbjct: 808 DI--KENKNHIEKENK 821 >gi|294507623|ref|YP_003571681.1| DNA mismatch repair protein MutS [Salinibacter ruber M8] gi|294343951|emb|CBH24729.1| DNA mismatch repair protein MutS [Salinibacter ruber M8] Length = 903 Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust. Identities = 308/827 (37%), Positives = 484/827 (58%), Gaps = 30/827 (3%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 + TP+MRQY +IK +P +++ +RMGDFYE F DDA SR LGITLT+R D+P Sbjct: 9 RGRTPLMRQYYKIKERHPKAILLFRMGDFYESFDDDAKTVSRLLGITLTERNNGDADDVP 68 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M G P H + ++ KLI+ G R+AICEQ+E ++ + +VV +VTPG D Sbjct: 69 MAGFPHHALDSHLPKLIRSGLRVAICEQVEDADDSSGKVVDR----DVVEVVTPGVSFHD 124 Query: 143 QLLSPTDSNYLMAV----ARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREII 198 QLL+P SN+L A+ R + ++ID +TG F ++ + D+L I + P E+I Sbjct: 125 QLLNPKQSNFLAALHFGTGRDKDRIGFSFIDATTGEFSVTEAGLDQLQDLIQTVAPSEVI 184 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 +++ + + L E V Q + F + + + +++ ++ FG + Sbjct: 185 VDKRKTERLQ-QHLREVPFTV-TEQEDWVFKYDFAYQTLLEHFETHSLKGFGVDDMDLGV 242 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLK 316 A+ AA+ Y+ +TQ P + +R + +D + NLE+++++ E +L+ Sbjct: 243 VASGAALHYLGETQKGALPHVRKIKRYSKDEHIALDPETKRNLELVQSIQDDGHEGTLVS 302 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D + T GGR + PL D +I RLD++ + + L +++ L D+ R Sbjct: 303 ILDETETPMGGRRLRAWLVRPLRDVGRIRHRLDAVEACVDDRTLRGDLREELNQMGDLER 362 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEK-LKKLPQSLEKTL 435 ++ GR P D+ I+ +R N+L L D + GA+E L+ P+ +++ + Sbjct: 363 LAGKVATGRAAPGDLIAIKHTLRRLPNVLGLLADAD--SDALGAIEDDLRPCPEMVDR-I 419 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 S L DD P +GG +RDG LDE R++ + K +A+L+ + +E T I +LK+ Sbjct: 420 QSALVDDPPAKISEGGLIRDGYSEELDELRTIAQEGKDWVANLETEESERTDIPSLKVGF 479 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+IEVT++ A + +D +I +QT+ + R+ T EL ++E +I A Sbjct: 480 NKVFGYYIEVTNTHADKVPED------YIRKQTLVDSERYVTPELKEMEEKILTAEEKIE 533 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E E F L + I +Q+ L ++++A +D LA +A++ +Y RP +D+ ++ Sbjct: 534 TLEQELFNELRDQIAQQTGILQENAELLAHLDCFAGLAEVAEQHDYTRPSVDDGLTIDIE 593 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 +GRHP+VE+TL PFI ND L P+D+ ++ ++TGPNM GKS LRQ LIV+ Sbjct: 594 EGRHPVVEQTLP--PGDPFIPNDMALD-PDDE---QVLIITGPNMAGKSVALRQVGLIVL 647 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +AQ+GS+VPA A IG+VD++F+RVG++DNLA+G STF+VEM E A+ILN AT +S ++ Sbjct: 648 LAQVGSFVPAEAAQIGVVDRIFTRVGASDNLAAGESTFLVEMNEAANILNNATARSLILF 707 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQVS 793 DE+GRGT+T DGLSIAWA +EYLHE R L ATH+HEL ++ L+R HN +QVS Sbjct: 708 DEVGRGTSTFDGLSIAWAIVEYLHERPEVAARTLFATHYHELNAMADRLERVHNYRIQVS 767 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + I+FL K+IPG ADHSYGI+V K+AGLP+ VI+RA ++L+ E Sbjct: 768 EHEGEIVFLRKLIPGGADHSYGIEVAKMAGLPDAVIARAREVLQNLE 814 >gi|315127431|ref|YP_004069434.1| DNA mismatch repair protein [Pseudoalteromonas sp. SM9913] gi|315015944|gb|ADT69282.1| DNA mismatch repair protein [Pseudoalteromonas sp. SM9913] Length = 863 Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust. Identities = 309/822 (37%), Positives = 482/822 (58%), Gaps = 31/822 (3%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 +K TPMM+QY++IKS + D L+FYRMGDFYELFFDDA A++ L I+ T RGK G I Sbjct: 11 IKQQTPMMQQYLKIKSEHRDILLFYRMGDFYELFFDDAKRAAQLLDISQTHRGKAGGDPI 70 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PM GVP H +Y+ +L+++G +AICEQ+ P +K V R VVR+VTPGT+++ Sbjct: 71 PMAGVPYHAVENYLARLVQMGESVAICEQVGDPATSK-----GPVERKVVRIVTPGTISD 125 Query: 142 DQLLSPTDSNYLMAVAR-IRTEWAIAWIDISTGIFKISTSNHDRLISD-IMRIDPREIIF 199 + LL N L +V + + ++ IA++DI++G F + N D S + R+ P E+++ Sbjct: 126 EALLQERQDNLLTSVWQNKKGQYGIAYLDINSGRFNVVEVNTDEAFSSTLQRLAPAELLY 185 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKT 258 SE H E L E + A +P+ FD ++ + + + + FG + Sbjct: 186 SE----HFENTHLIEHIKG-ARRRPDWEFDLDTAQHLLCEQFGTKDLVGFGVDKAHSALV 240 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA + Y+K TQ + P I E + + +D+ R NLE+ LSG E +L + + Sbjct: 241 AAGCLMQYVKDTQRIALPHIRAITLEHNEHAVILDAPTRKNLELTVNLSGGFENTLAQVL 300 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D + T G RL RI +P+ + ++N+RL++I+ + + L + + LK D+ R + Sbjct: 301 DKTATAMGSRLLKRRIHTPIRNKDELNSRLNAISAIL-DVQLCSELHDALKEIGDIERVI 359 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 +RL + P+D+ +R +++ + L+ L + + + K+LP+ L+ L Sbjct: 360 ARLALHTARPRDLTRLRSALQA-LAPLHSLLNDATDARISHIIAHSKELPE-LQALLERA 417 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + D+ P RDGG + G ++ LDE R+L + ++ L+ + E T I LKI +N Sbjct: 418 VIDNPPVLIRDGGVIAPGYNSELDEWRNLSQGATDVLEQLEQRERERTGISTLKIGYNRV 477 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 G+FIEV+ +++ ++ D +I RQT+ N R+ EL + E+++ + + AL +E Sbjct: 478 HGFFIEVSRANSHLVPAD------YIRRQTLKNNERYIIPELKEHEDKVLGSQSKALALE 531 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + +E L I E L + VIA +D+ LA A+ NY +P + ++ N +K GR Sbjct: 532 KQLYEQLFEFIAPHIEQLQIMASVIADLDVLNNLAERAQTLNYAKPELCDNDNISIKQGR 591 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ +K PFIAN +L+ N K+ ++TGPNMGGKST++RQ ALIV+MA Sbjct: 592 HPVVEQVMK----DPFIANPVELN-----NQRKMLIITGPNMGGKSTYMRQTALIVLMAH 642 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +G YVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+ILN AT QS V++DEI Sbjct: 643 IGCYVPADSAKIGNIDRIFTRIGASDDLASGRSTFMVEMTETAAILNNATAQSLVLMDEI 702 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGLS+A+AT ++L + L ATH+ ELT+L++ N L + N+ Sbjct: 703 GRGTSTYDGLSLAYATADHLASKIAAKTLFATHYFELTELAEQTPGLVNVHLDAIEHNDT 762 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 I F+H V+ G A S+G+QV LAG+P VI++A L E Sbjct: 763 IAFMHTVLDGAASKSFGLQVAALAGVPKAVIAQAKQKLSLLE 804 >gi|310828245|ref|YP_003960602.1| DNA mismatch repair protein MutS [Eubacterium limosum KIST612] gi|308739979|gb|ADO37639.1| DNA mismatch repair protein MutS [Eubacterium limosum KIST612] Length = 877 Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust. Identities = 320/892 (35%), Positives = 503/892 (56%), Gaps = 41/892 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+E D+++F+R+GDFYE+FFDDAL AS+ L I LT R L + PMCG Sbjct: 4 TPMMQQYLETHEKVKDAILFFRLGDFYEMFFDDALKASKELEIALTGRDCGLDERAPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A YI KL++ G+++AICEQ+E P AK +V+R ++R+++PGT+ E +LL Sbjct: 64 VPYHAAESYITKLVEKGYKVAICEQMEDPSVAK-----GIVKREIIRVISPGTIAEGKLL 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIF---KISTSNHDRLISD-IMRIDPREIIFSE 201 +NYLM++ + + +A++DISTG F +IS N L+ D + +I P EI+ + Sbjct: 119 ESKKNNYLMSLYQEKNTIGLAYLDISTGDFFVTEISGKNTLALLMDEVGKIGPSEILVNP 178 Query: 202 KELSH-AEYKSLFETLGNVAVAQPNVFFDHSISESRIA---DYYNITTVDTFGSFSQVEK 257 K+L E G + P +F+ SESR+ D Y++T +D V Sbjct: 179 TLFKDTGTIKTLEEKFGIMTNLYPARYFEFKASESRLKEQFDVYSLTALDLERREHSVR- 237 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLK 316 AA A + YI +TQ I + + +D + R NLE+ T+ SG ++ SLL Sbjct: 238 -AAGALLRYIDETQKRVLTHINHVSYYKNDEYMILDLSTRRNLELTETIRSGEKKGSLLW 296 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D ++T GGR+ + +PL + I R D + ++P + ++ +L D+ R Sbjct: 297 VLDKTVTAMGGRMLRRWLEAPLLEKKAIEARQDMVEELYRHPGALKDLKGVLGKVYDLER 356 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN-DLPEELRGAVEKLKKLPQSLEKTL 435 ++ G PKD+ ++ + S + +L F D P + E L + + + Sbjct: 357 ICGKISFGTCNPKDMLSLKQSV-SALPLLQAFFAGIDAPVFRKRYGEA--DLLTDIYELI 413 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + + D+ P +DG ++ G + +D R ++ K I L+LK E T IK+LK+K+ Sbjct: 414 DASIDDNAPFALKDGKVIKRGYNEEIDGYREASEKGKDWIRDLELKERERTGIKSLKVKY 473 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GYFIE+T ++ +D +I +QT++N RF T EL ++E RI + Sbjct: 474 NRVFGYFIEITKTNLDQTPED------YIRKQTLANAERFFTPELKEMETRILGSEERLA 527 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E E F+ + II Q + ++ +A ID +LA +A NY +P I N ++ Sbjct: 528 QLEYELFQDVREKIIAQIARIQKRARDVAEIDALYSLAQVAIAGNYVKPEITNGPELEIE 587 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 +GRHP+VE+ + F+ N C D ++ L+TGPNM GKST++RQ A+I + Sbjct: 588 NGRHPVVEEII---GINHFVTNGCHF----DGKDLRMMLITGPNMAGKSTYIRQVAVIAL 640 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+GS++PA IGIVD++F+RVG++D+LA+G+STFMVEM E ++IL AT S VIL Sbjct: 641 MAQIGSFIPADSGRIGIVDRIFTRVGASDDLATGQSTFMVEMTEVSNILKNATQDSLVIL 700 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 DEIGRGT+T DG+SIAWA +EYL + + L ATH+HELT+L N ++ V Sbjct: 701 DEIGRGTSTFDGISIAWAVVEYLWDEQIIGAKTLFATHYHELTELEHLKPGIKNFSIGVR 760 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM--- 850 ++ EG++FL K+ PG AD SYGI+V +LAG P V +RA +IL ++ ++ M Sbjct: 761 ETPEGVVFLRKIKPGSADQSYGIEVARLAGFPPAVTNRAREILNILDQGEDTYREGMIAA 820 Query: 851 ---RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 +I + +S+ +K + IK L+++EM+P+ A+ LY +++ Sbjct: 821 EKPSFESAQINFFDRIPAMSEEEKAVLNSIKDLSINEMTPMEAMNQLYGLQS 872 >gi|291550404|emb|CBL26666.1| DNA mismatch repair protein MutS [Ruminococcus torques L2-14] Length = 888 Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust. Identities = 319/904 (35%), Positives = 512/904 (56%), Gaps = 43/904 (4%) Query: 14 EQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR 73 E ID+++ TPMM+ Y E K D ++FYR+GDFYE+FFDDAL ASR L ITLT + Sbjct: 2 ENIDIDK----LTPMMKIYCETKEQYKDCILFYRLGDFYEMFFDDALTASRELEITLTGK 57 Query: 74 GKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRL 133 L + PMCG+P H Y+ +L+ G+++AICEQ+E P AK +V+R VVR+ Sbjct: 58 SCGLDERAPMCGIPYHAVEGYLNRLVAKGYKVAICEQVEDPKTAK-----GIVKREVVRI 112 Query: 134 VTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRI 192 VTPGT + Q L T +NY+M + I + +A DISTG F + RL+ +I + Sbjct: 113 VTPGTNLDTQALDETKNNYIMCIVYIADRYGVAIADISTGDYFVTELPDSSRLMDEIYKF 172 Query: 193 DPREIIFSEK-ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG- 250 P EII +E +S + ++ + LG + + +FD ++ + ++ +++ + G Sbjct: 173 SPSEIICNEAFYMSGMDLDAMRDKLGITIYSLDSWYFDDAVCKDKLLEHFKVKNFAGLGL 232 Query: 251 SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR 310 + +A A + Y+ +TQ + + + + IDS+ R NLE+ TL + Sbjct: 233 ADYDCGIISAGALLIYLFETQKNSLSNLTHITPYITGKYMLIDSSTRRNLELCETLREKQ 292 Query: 311 EQ-SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 ++ SLL +D + T G R + + PL D ++IN RLD++ I I++ L Sbjct: 293 KRGSLLWVLDKTRTAMGARTLRKNVEQPLIDKSEINRRLDAVEELKNQAIAREEIREYLS 352 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 D+ R ++++ G P+D+ + G + + L++ L+ E L L + Sbjct: 353 PVYDLERLITKITYGSANPRDLTAFK-GSLEMLPPIRYILQDLQAPLLKEIYEDLDAL-E 410 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 L + ++ + +D P ++G +RDG + +D+ R + K +A L+ E+T IK Sbjct: 411 DLCELVTKAIREDPPLAMKEGNIIRDGYNEEVDKLRRAKSDGKDWLAKLENDEREKTGIK 470 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 NLKIK+N GY++EVT+S KDL D + +QT++N R+ T EL +LE+ I Sbjct: 471 NLKIKYNKVFGYYLEVTNSY-----KDL-VPDYYTRKQTLANAERYITPELKELEDMILG 524 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 A + +E E + + I Q E + ++ +A +D +LA++A+ NY RP I+ Sbjct: 525 AEDKLYALEYELYSEVRETIAGQVERIQQTAKAVAALDAFSSLALVAERNNYVRPKINEK 584 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 +K+GRHP+VE+ + FIAND L D ++ ++TGPNM GKST++RQ Sbjct: 585 GILDIKEGRHPVVERMIPNDM---FIANDTYL----DDKKHRISIITGPNMAGKSTYMRQ 637 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI +MAQ+GS+VPA A+I + D++F+RVG++D+LASG+STFMVEM E A+IL AT+ Sbjct: 638 TALIALMAQIGSFVPAESANICLSDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATS 697 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHN 787 +S +ILDEIGRGT+T DGLSIAWA +EY+ ++ + L ATH+HELT+L + +N Sbjct: 698 KSLLILDEIGRGTSTFDGLSIAWAVVEYISDSKLLGAKTLFATHYHELTELEGKIDNVNN 757 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE------- 840 + V + + I+FL K++ G AD SYGIQV KLAG+P+ VISRA +I++ Sbjct: 758 YCIAVKEKGDDIVFLRKIVKGGADKSYGIQVAKLAGVPDLVISRAKEIVEELSDEDITNR 817 Query: 841 ------KLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 K + +K Y E+ + + D ++++K +++ ++P+ AL T+ Sbjct: 818 VSEIAAKEHTAKKKSKAKKYDEVDMAQMSLFDTVKDDDVLDELKNIDVGNLTPIDALNTI 877 Query: 895 YAVK 898 Y ++ Sbjct: 878 YRLQ 881 >gi|225378113|ref|ZP_03755334.1| hypothetical protein ROSEINA2194_03773 [Roseburia inulinivorans DSM 16841] gi|225210114|gb|EEG92468.1| hypothetical protein ROSEINA2194_03773 [Roseburia inulinivorans DSM 16841] Length = 822 Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust. Identities = 300/818 (36%), Positives = 490/818 (59%), Gaps = 30/818 (3%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+ Y++ K D ++FYR+GDFYE+FFDDA+L S+ L +TLT + + + PMCG+P Sbjct: 1 MMQHYLQTKEEYKDCILFYRLGDFYEMFFDDAVLVSKELELTLTGKSCGMEERAPMCGIP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H Y+ +L+ GH++AICEQ+E P AK +V+R V+R+VTPGT + Q L Sbjct: 61 YHAVEGYLNRLVANGHKVAICEQVEDPKLAK-----GIVKREVIRVVTPGTNMDIQALDE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREIIFSEK-ELS 205 + +NY+M + + ++ I+ D+STG + ++ + +R LI +I + P EI+ +E +S Sbjct: 116 SKNNYIMCIVYLADKYGISLADVSTGDYYVTEVDSERKLIDEINKFAPSEIVCNESFYMS 175 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI- 264 + + + LG + +F +E+ + ++++ +++ G T AA A+ Sbjct: 176 GVDLEDMRHRLGITIYSLDAWYFSDETAETTLKGHFHVNSLEGLGLNDYAYGTIAAGALL 235 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT 323 Y+ +TQ N I + IDS+ R NLE++ T+ +++ SLL +D + T Sbjct: 236 KYLYETQKNNLDHISAIHPYSTGKFMIIDSSTRRNLELVETMREKQKRGSLLWVLDKTKT 295 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL + PL D +I R D+I ++ I +++ L D+ R ++R+ Sbjct: 296 AMGARLLRSYVEQPLIDKAEIEKRQDAIADINRHMITREELREYLNPIYDLERLITRVTY 355 Query: 384 GRGEPKDIAVIRD--GIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 P+D+ ++ G+ I L +L +E++ ++ L++L Q ++ ++ + Sbjct: 356 MSANPRDLIAFKNSIGMLPPIKTLLEDFDTELLKEIQTDMDSLEELYQLIDASIM----E 411 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + P R+GG ++DG + ++D+ R + + K +A L+ K E+T IKNLKIK N GY Sbjct: 412 EPPISVREGGLIKDGYNENVDKYRHAKTEGKTWLAELEAKEREKTGIKNLKIKFNKVFGY 471 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 ++EVT+S ++ D F +QT++N R+ T EL +LE+ I A + + +E + Sbjct: 472 YLEVTNSYRDLVP------DYFTRKQTLANAERYITPELKELEDMILGAEDKLINLEYDL 525 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 F + N I + + ++ +A +D ++LA++A + NYCRP I+ + +KDGRHP+ Sbjct: 526 FCEVRNRIAAEVVRIQKTAKAVAKLDTFVSLAVVADQNNYCRPKINENGVIDIKDGRHPV 585 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VEK + ++ FIAND L D + ++ ++TGPNM GKST++RQ A+IV+MAQ+GS Sbjct: 586 VEKMM---NNDMFIANDTYL----DNGNNRISIITGPNMAGKSTYMRQTAIIVLMAQIGS 638 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPAS A IGIVD++F+RVG++D+LASG+STFMVEM E A+IL AT+ S ++LDEIGRG Sbjct: 639 FVPASSAKIGIVDRIFTRVGASDDLASGQSTFMVEMNEVANILRNATSNSLLVLDEIGRG 698 Query: 742 TATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 T+T DGLSIAWA +E++ + L ATH+HELT+L L +N + V + + I Sbjct: 699 TSTFDGLSIAWAVVEHISNPKLLGAKTLFATHYHELTELEGKLHNVNNYCIAVKEKGDDI 758 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILK 837 +FL K++ G AD SYGIQV KLAG+P++VI RA I++ Sbjct: 759 VFLRKIVRGGADKSYGIQVAKLAGVPDSVIERAKQIVE 796 >gi|297617257|ref|YP_003702416.1| DNA mismatch repair protein MutS [Syntrophothermus lipocalidus DSM 12680] gi|297145094|gb|ADI01851.1| DNA mismatch repair protein MutS [Syntrophothermus lipocalidus DSM 12680] Length = 876 Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust. Identities = 325/886 (36%), Positives = 503/886 (56%), Gaps = 51/886 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY IK PD ++F+R+GDFYE+FF+DA +A++ L I LT R G +PMCG Sbjct: 5 TPMMEQYRAIKEQYPDCILFFRLGDFYEMFFEDAEIAAQILEIVLTARDGGSGVKVPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A+ YI +LI G+R+AICEQ+E P K LV+R VVR++TPGT+ + +L Sbjct: 65 VPFHAADTYISRLIAKGYRVAICEQVEDPAL-----TKGLVKREVVRVITPGTVVDVSML 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFK---ISTSNHDRLI-SDIMRIDPREII--- 198 ++NYL+A+A + +A ID+STG F+ +S L+ S++ R+ P E + Sbjct: 120 EAGENNYLVALAENESAIGLAVIDVSTGDFQATEVSGPEASSLVLSELYRLRPAECLIPA 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEK 257 ++++E E+ F+ +V ++ ++ +E+++ +++ + + G S Sbjct: 180 WTQRESILYEFTEKFQN--SVVTEMDPTYYQYAWAEAKLREFFEVEDLVELGLESCPAAV 237 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQSLLK 316 AAA +++++ T + + L +D R NLE+ R L G RE SLL Sbjct: 238 IAAAVIVAFLESTCRAQLKHLSRIRTYQPREYLGLDVNTRRNLELTRNLKDGKREGSLLA 297 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 ID T G RL + PL D IN RLD++ + L I++IL D+ R Sbjct: 298 VIDCCRTAMGRRLLQRWLEQPLVDVKAINERLDAVEEMYNSFSLRERIREILGDVHDIER 357 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNL-FLKNDLPEELRGAVEKLKKLP--QSLEK 433 R+ G P+++ +++ +++NL K LPE ++K+ +L + + + Sbjct: 358 LAGRIGSGVASPRELLALKN------SLINLPAFKALLPEVRTHLLKKILELDTLEDVYR 411 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L S+L ++ P R+GG ++ G + +DE R L + K + + E T IK+LK+ Sbjct: 412 LLDSVLDENAPASIREGGIIKPGCNPEVDELRKLAFEGKEWLLEYEQGERERTGIKSLKL 471 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GYFIEVT + ++ ++ +QT+ N R+ T +L + E ++ +A Sbjct: 472 GFNRVFGYFIEVTKPNVHLVP------SHYVRKQTLVNAERYITDDLKNYEEKVLSARER 525 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 +L+E E F++L + L + +A +D+ LA A +Y RP++D+S Sbjct: 526 LVLLEQELFQVLREEVACHVSRLQEVAGALAKLDVIACLAETAFRHDYVRPLVDDSDVIF 585 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 VK+GRHP+VE+ L +S F+ ND L D +L ++TGPNMGGKST++RQ ALI Sbjct: 586 VKNGRHPVVERFLGSES---FVPNDTYL----DDKERRLAIITGPNMGGKSTYMRQVALI 638 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 I+AQ+GS+VPA+ A IG+VD++F+RVG++D+L G+STFMVEM+E A IL AT +S V Sbjct: 639 TILAQVGSFVPATEARIGVVDQVFTRVGASDDLVGGQSTFMVEMVEVAHILKNATRKSLV 698 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ILDEIGRGT+T DG+SIA A +E++ + L ATH+HELT L + L N ++ V Sbjct: 699 ILDEIGRGTSTFDGMSIAQAVLEHICSHIGAKTLFATHYHELTGLDEVLPGVFNLSVSVK 758 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 +S +IFL KVIPG AD SYGIQV LAGLP VI RA +IL++ E + Sbjct: 759 ESAGAVIFLKKVIPGRADKSYGIQVAGLAGLPVGVIQRAGEILRSLES---------KGG 809 Query: 854 YPEIQTKESKN----NLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 +++ + N L + + VE++K L LD+M+PL AL+ LY Sbjct: 810 VDKVEAINASNVVQLALFQEEHPLVEELKQLELDDMTPLEALQLLY 855 >gi|217967464|ref|YP_002352970.1| DNA mismatch repair protein MutS [Dictyoglomus turgidum DSM 6724] gi|217336563|gb|ACK42356.1| DNA mismatch repair protein MutS [Dictyoglomus turgidum DSM 6724] Length = 853 Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust. Identities = 336/888 (37%), Positives = 509/888 (57%), Gaps = 50/888 (5%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 +++ TP+ RQY IK D+++ +R+GDFYE F +DA + S+ L I LT + GK I Sbjct: 1 MENMTPLYRQYKSIKDQFSDAILLFRLGDFYEAFEEDAKIISQELDIVLTSKEIGKGKRI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PM GVP H+ + Y+ KL++ +++AICEQ+E P AK LVRR VVR++TPGTL E Sbjct: 61 PMAGVPYHSLDSYLSKLVQKKYKVAICEQVEDPALAK-----GLVRREVVRVITPGTLVE 115 Query: 142 DQLLSPTDSNYLMAVARIRTEW-AIAWIDISTGIF---KISTSNHDRLI-SDIMRIDPRE 196 D LL ++N+L ++ + E+ A+A ID+STG F + + + +I S+++R+ P+E Sbjct: 116 DTLLEDKNNNFLSSIYALNREYLALATIDVSTGEFFATEWRGKDAEEIIYSELVRLKPKE 175 Query: 197 II--FSEKELSHAEYKSLFETLGNVAVAQPNVFF---DHSISESRIADYYNITTVDTFGS 251 II FS K+L L + + +F DH IS S + Y + G Sbjct: 176 IILPFSLKDLLSELLSDLKREVDPKITLLEDSYFEPSDHQISYSEPEENYPLAEKSING- 234 Query: 252 FSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSR 310 +SYIK+ I E Q L +DS A +LE+L T+ G R Sbjct: 235 -----------VLSYIKEVMFTIPTHIERVEFYKPQQYLILDSTAIKHLELLETVREGQR 283 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 SL+ +D ++T G RL + + PL + I R ++I F+ +++ILK Sbjct: 284 RGSLIWVLDKTLTSMGARLLKKWLLQPLLNVNAIKKRQEAIKEFLDKDPWRREMEEILKE 343 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS 430 PD+ R SR+ PK++ +R + S + +L L+ L+ E L L + Sbjct: 344 MPDLERINSRINYNTATPKELIYLRQAL-SFLPLLRKSLEKAESNRLKELKENLPNL-EP 401 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L + L L + P+ +DGG+++DG D +LDE R L +SK + +L+ + E T IK+ Sbjct: 402 LYEELDRALVESPPSHIKDGGYIKDGYDPNLDELRKLLRESKDWLINLENRERERTGIKS 461 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LKI +N GY+IEVT ++ +++ D +I +QT+ N RF T EL + EN+I +A Sbjct: 462 LKIGYNQVFGYYIEVTKANLNLVPSD------YIRKQTLVNAERFITPELKEWENKILHA 515 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 ++ IE E F+ L +I+ S+ + +Q IA ID+ I+LA A+E NY P I N Sbjct: 516 EDNIKKIEEELFQNLRKKVIKHSKDITTFAQTIAEIDVYISLAKAAREYNYVCPQITNDY 575 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 I+++GRHP++E+ L + F+ ND L+ DK L+TGPNM GKST++RQ Sbjct: 576 EVIIREGRHPVIERMLPPGT---FVPNDAYLN--KDKFID---LITGPNMAGKSTYIRQI 627 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI+I+AQMGS++PA A IG+VD++F+R+G+ D+++SG STF+VEM E +IL+ AT + Sbjct: 628 ALIIILAQMGSFIPAKEAKIGVVDRIFTRIGAWDDISSGESTFLVEMKEVGNILSHATER 687 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S +ILDE+GRGT+T DG+SIAWA +EY+H + + L ATH+HELT+L K LK N ++ Sbjct: 688 SLIILDEVGRGTSTYDGISIAWAIVEYIHNKIKAKTLFATHYHELTELEKELKHLKNLSV 747 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM 850 V + + IIFLHK+ AD SYGI V +LA LP VI RA IL EK +K++ Sbjct: 748 AVQEKGKDIIFLHKIAEKPADKSYGIYVAQLADLPKEVIERAEKILFELEKGREIKKKEI 807 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + +SK KN+ I LN +E++P+ AL ++ K Sbjct: 808 VQLPLFSEITDSKLEKLKNE------ILSLNTNELTPIQALLKIHEWK 849 >gi|206900896|ref|YP_002250799.1| DNA mismatch repair protein MutS [Dictyoglomus thermophilum H-6-12] gi|206739999|gb|ACI19057.1| DNA mismatch repair protein MutS [Dictyoglomus thermophilum H-6-12] Length = 853 Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust. Identities = 338/889 (38%), Positives = 517/889 (58%), Gaps = 52/889 (5%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 +++ TP+ RQY IK D+++ +R+GDFYE F +DA + S+ L I LT + G+ I Sbjct: 1 MENMTPLYRQYKSIKDQFSDAILLFRLGDFYEAFEEDAKIISQELDIVLTSKEIGKGRRI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PM GVP H + Y+ KL++ +++AICEQ+E P AK LV+R VVR++TPGTL E Sbjct: 61 PMAGVPYHALDSYLSKLVQKKYKVAICEQVEDPALAK-----GLVKREVVRVITPGTLVE 115 Query: 142 DQLLSPTDSNYLMAVARIRTEW-AIAWIDISTGIFKIS----TSNHDRLISDIMRIDPRE 196 D LL ++N+L ++ + E+ ++A ID+STG F + + + S+++R+ P+E Sbjct: 116 DTLLEDKNNNFLSSIYALNKEYISLATIDVSTGEFFATEWRGKEAEEIIYSELVRLKPKE 175 Query: 197 II--FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 II FS K+L + L L + + D+ S Y I D + Sbjct: 176 IILPFSLKDL----FSELLTDLKREVDPKITLLDDNYFQFSD----YAIKYSDDKEKYPL 227 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDI---QSTLFIDSAARSNLEILRTL-SGSR 310 E++ A ++YIK+ M PT + ER +I Q L +DS A +LE+L T+ G R Sbjct: 228 AERSVNGA-LNYIKEV-MFTIPT--HIERVEIYQPQQYLILDSTAIKHLELLETVREGQR 283 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 SL+ +D ++T G RL + I PL + I R +I F++ I+ ILK Sbjct: 284 RGSLIWVLDKTLTSMGARLLKKWILQPLLNVNAIKKRQGAIKEFLEKEPWRREIEDILKE 343 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS 430 PD+ R SR+ PK++ +R + S + +L L+ + L+ E L L + Sbjct: 344 MPDLERINSRINYNTATPKELIYLRQAL-SFLPLLRKSLEKAESDRLKELKENLPDL-EP 401 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L + L L + P+ +DGG+++DG D +LDE R L +SK + +L+ + E T IK+ Sbjct: 402 LYEELDRALVESPPSHIKDGGYIKDGYDPNLDELRRLLRESKDWLINLENRERERTGIKS 461 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LKI +N GY+IEVT ++ +++ D +I +QT+ N RF T EL + EN+I +A Sbjct: 462 LKIGYNQVFGYYIEVTKANLNLVPPD------YIRKQTLVNAERFITPELKEWENKILHA 515 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 ++ IE E F+ L +IE S + +Q+I ID+ I+LA A+E NY P + N Sbjct: 516 EDNIKKIEEELFQNLRKKVIEHSRDITTFAQIIGEIDVYISLAKAAREYNYVCPQVTNDY 575 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLW-LLTGPNMGGKSTFLRQ 669 + I+++GRHP++E+ L + F+ ND L N K L+TGPNM GKST++RQ Sbjct: 576 DVIIREGRHPVIERMLPPGT---FVPNDAYL------NREKFIDLITGPNMAGKSTYIRQ 626 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI+I+AQMGS++PA A IG+VD++F+R+G+ D+++SG STF+VEM E +IL+ AT Sbjct: 627 IALIIILAQMGSFIPAKEAKIGVVDRIFTRIGAWDDISSGESTFLVEMKEVGNILSHATE 686 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 +S +ILDE+GRGT+T DG+SIAWA +EY+H + + L ATH+HELT+L K L+ N + Sbjct: 687 RSLIILDEVGRGTSTYDGISIAWAIVEYIHNKIKAKTLFATHYHELTELEKELRHLKNLS 746 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 + V + + IIFLHK++ AD SYGI V +LA LP VI RA IL EK +K+ Sbjct: 747 VAVQEKGKEIIFLHKIVDKPADKSYGIYVAQLADLPREVIERAEKILLELEKGREIKKKE 806 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + P S+ SK +KL E I LN +E++P+ AL ++ K Sbjct: 807 V-IQLPLF----SEITDSKLEKLRNE-ILSLNTNELTPIQALLKIHEWK 849 >gi|189485482|ref|YP_001956423.1| DNA mismatch repair protein MutS [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287441|dbj|BAG13962.1| DNA mismatch repair protein MutS [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 845 Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust. Identities = 335/887 (37%), Positives = 508/887 (57%), Gaps = 63/887 (7%) Query: 29 MRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPV 88 M+QY IK+ ++F+R+GDFYE+F DDA+ A+ L + LT+R +G IPMCGVP Sbjct: 1 MKQYWNIKAKYSGMMLFFRLGDFYEMFGDDAVKAAPVLEVVLTRR---VG--IPMCGVPY 55 Query: 89 HTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPT 148 H+ N YI+KLI G ++AICEQ+E + K +V+R V +++TPGT+ ED LL Sbjct: 56 HSVNSYIRKLITKGFKVAICEQLE-----ESGTTKGIVKRGVTKVLTPGTILEDTLLESK 110 Query: 149 DSNYLMAVA--RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSH 206 ++N+LM+V A DISTG F +S + + +++++ +P E+I S + + Sbjct: 111 ENNFLMSVIFDDTAASATFAAADISTGEFFVSETTLKSIEAEVLKYNPGELIISAGSMQN 170 Query: 207 AEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAIS 265 ++ S F V+V+ N FFD +++ A+ + V FG + A A ++ Sbjct: 171 -KHISDFTAKLKVSVSDIDNSFFDIEKAQNITAELFGGNAVKKFGLNKKEIVCACGALLA 229 Query: 266 YIKKTQMVNKPT---IGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYS 321 YIK+ Q + I Y D +++D+AA NLE+L ++ SG E SLL +D + Sbjct: 230 YIKEMQPQSVSIFSEIKYIRNSDF---MYLDTAAIKNLELLNSMTSGKTENSLLSVMDST 286 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G R + + PL D +KI R + + FFI+NP + I + LK+ D+ R +R+ Sbjct: 287 KTPMGARTIRQWLIKPLLDISKIKNRQNIVRFFIKNPNVRKEIVEKLKTVSDIERITARV 346 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLF-----LKNDLPEELRGAVEKLKKLPQSLEKTLS 436 G PKD+ +++ +++ NI + L ++PE + + +S Sbjct: 347 SSGSANPKDLTALKNSLKTINNISGIIKSAEGLGFNIPENAQ------------ITNKIS 394 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 S LSD+ P +DG +++G +A LDE R + +K I++L+ K + I NLKI + Sbjct: 395 SYLSDEPPVSLKDGNAIKNGVNAELDELRKMSTDTKAYISNLEAKERAASGINNLKIGYT 454 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 + GY+IE++ S+A+ K ++ +QT++ R+ T EL LE +I +A L Sbjct: 455 SVFGYYIEISKSNAASAPK------HYVRKQTVTAGERYITEELKILEEKILSAQEKTLR 508 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E F L I + + SQ+I+ IDI A A E NY P I +KD Sbjct: 509 LENSLFNNLVQEISVFTADILKTSQIISEIDIFCGFAENATEYNYVCPKISEGRELSIKD 568 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE+ LK F AND D+NS K+ +LTGPNM GKST+LRQ ALIVIM Sbjct: 569 GRHPVVERILKNGE---FTANDIAF----DENS-KIMILTGPNMSGKSTYLRQTALIVIM 620 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+GS+VP+ A IG+VDK+F+R+G+ DNLA G STFMVEM ETA+ILNQ T +S +ILD Sbjct: 621 AQIGSFVPSQSAEIGLVDKIFTRIGAGDNLAGGESTFMVEMSETANILNQYTQRSLIILD 680 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNR-----CRGLLATHFHELTDLSKSLKRFHNATLQ 791 E+GRGT+T DG+SIAWA IE+L + R + L ATH+ ELT LS++LK N ++ Sbjct: 681 EVGRGTSTYDGMSIAWAIIEFLADDKRKANTGAKTLFATHYFELTGLSETLKGVVNYSVD 740 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR 851 + + N +IFLHK++ G AD SYGI V K+AG+P+ VI RAY+IL EK + + R Sbjct: 741 IKEWNGDVIFLHKIVKGSADKSYGIHVAKIAGMPHQVIERAYEILSRLEK--NSVEYSKR 798 Query: 852 LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P+I+ S + + ++K +++D +SP+ A ++ K Sbjct: 799 DESPQIEFFSD----SGGEPQILTELKNIDIDSLSPIEAFNIMHNWK 841 >gi|218781834|ref|YP_002433152.1| DNA mismatch repair protein MutS [Desulfatibacillum alkenivorans AK-01] gi|226723055|sp|B8FJL5|MUTS_DESAA RecName: Full=DNA mismatch repair protein mutS gi|218763218|gb|ACL05684.1| DNA mismatch repair protein MutS [Desulfatibacillum alkenivorans AK-01] Length = 889 Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust. Identities = 308/885 (34%), Positives = 512/885 (57%), Gaps = 43/885 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM+RQY+ IK+ +PDS++F+RMGDFYE+FF+DA AS+ L ITLT R K+ +PMCG Sbjct: 7 TPMVRQYLSIKAEHPDSILFFRMGDFYEMFFEDAEKASKALDITLTSRNKNDPDPVPMCG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+AN Y+ +L++ G ++AIC+Q++ P EAK LV R VV++VTPG + + L Sbjct: 67 VPHHSANGYVARLVEQGFKVAICDQVQDPSEAK-----GLVERKVVQVVTPGMQLDGRYL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKEL 204 + +N++ A R +A++DISTG F ++ + + +I+R+ P+E++ EK Sbjct: 122 DASQNNFVCAAVTGRGGVGLAFLDISTGAFLVTQVTTPESAFQEILRMGPKELVLPEKFE 181 Query: 205 SHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAAAA 262 +A + + ++ F+++ + R+ +++ +++ FG + AA A Sbjct: 182 ENARAAAAMRMADQLPTSRLEGKDFENARTRDRLLEHFKTRSLEGFGIQDLPLAVRAAGA 241 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYS 321 + Y+++ Q + + L+ID + NLE+L+ + +G+R+ +L+ +D + Sbjct: 242 LLHYVQQAQRQEITHVTKIQAYFQDQFLWIDDNSARNLELLKNIRNGTRQGALISVLDKT 301 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +T G RL + + PL D IN RLD++ + + +++ LK D+ R SR Sbjct: 302 VTAMGARLMSYLLRYPLIDPQVINLRLDAVEQAKDLARVRDEVREALKEVHDLERLRSRT 361 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAV--EKLKKLPQSLEKTLSSML 439 +G +D+A + + ++ + L +N L G + L + +++++ Sbjct: 362 ALGHANGRDLAAMGESLKQLPRLWALLKENFESPLLCGEATDDGLTDVADLIDRSIR--- 418 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 +D P RDGG ++ G + LDE +L K +IA L+ + E T I LK+++N Sbjct: 419 -EDAPPGVRDGGMIKPGFNEELDEVAALATDVKGLIAGLEAQEKERTGISTLKVRYNKVF 477 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IE++ + + ++ +QT+ N R+ T EL + E ++ A + +E Sbjct: 478 GYYIEISKNQTKSIPP------HYVRKQTLVNAERYITDELKEFETKVLGAEERRVALEY 531 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 F + + I +++ L+ AS +IA +D+ AL +A YCRP++D +++ RH Sbjct: 532 NIFTQIVDRINGENDRLEKASHLIAWVDVLAALGHVADHNGYCRPVVDMGQTLDLQESRH 591 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VEK L Q F+ N+ ++ + + + ++TGPNM GKST LRQ AL VIMAQM Sbjct: 592 PVVEKMLPGQR---FVPNNIAMNNLDQQ----ILMITGPNMAGKSTVLRQAALCVIMAQM 644 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPA A +G+VDK+F+RVG+ DNL+ G STFMVEM ETA+ILN +++S VILDEIG Sbjct: 645 GSFVPAEKAVVGVVDKIFTRVGALDNLSQGESTFMVEMQETANILNNVSHRSLVILDEIG 704 Query: 740 RGTATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 RGT+T DGLSIAWA EYLH+ + + + ATH+HELTDL+K+ R N + V++ N+ Sbjct: 705 RGTSTFDGLSIAWAVAEYLHDYKDHGVKTMFATHYHELTDLTKTHPRVKNFNIAVNEWND 764 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY-PE 856 IIFLH ++ G + SYGIQV +LAG+P +VI R+ +L+T E + ++ R+ Y + Sbjct: 765 EIIFLHSLVEGGTNKSYGIQVARLAGIPASVIRRSKQVLQTIE-----DSEEARVAYSAK 819 Query: 857 IQTKESKNNLSKNDKLF-------VEKIKCLNLDEMSPLTALKTL 894 K K ++ LF + ++ ++++ M+PL A+ L Sbjct: 820 ASGKSGKKDVQVQMSLFPTPGELAAQALERMDINVMTPLEAMNVL 864 >gi|77359644|ref|YP_339219.1| DNA mismatch repair protein [Pseudoalteromonas haloplanktis TAC125] gi|115299212|sp|Q3IDC8|MUTS_PSEHT RecName: Full=DNA mismatch repair protein mutS gi|76874555|emb|CAI85776.1| methyl-directed mismatch repair ATP-binding protein, dimer/tetramer, associates to MutL, triggers MutH activity on hemimethylated GATC [Pseudoalteromonas haloplanktis TAC125] Length = 861 Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust. Identities = 323/882 (36%), Positives = 506/882 (57%), Gaps = 37/882 (4%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 +K TPMM+QY++IKS + D L+FYRMGDFYELFFDDA A++ L I+ T+RGK G I Sbjct: 11 IKQQTPMMQQYLKIKSEHRDILLFYRMGDFYELFFDDAKRAAQLLDISQTQRGKAGGDPI 70 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PM GVP H +Y+ +L+++G +AICEQ+ P +K V R VVR+VTPGT+++ Sbjct: 71 PMAGVPYHAVENYLARLVQMGESVAICEQVGDPATSK-----GPVDRKVVRIVTPGTISD 125 Query: 142 DQLLSPTDSNYLMAVARIRT-EWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREIIF 199 + LL N L +V + + + IA++DI++G F + N D S I R+ P E+++ Sbjct: 126 EALLQERQDNLLTSVWQSKNGTYGIAYLDINSGRFNVVEVNTDEAFTSTIQRLAPAELLY 185 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKT 258 SE E L E + A +P FD ++ + + + + FG + Sbjct: 186 SES----FENVHLIEHIKG-ARRRPEWEFDLDTAQHLLCEQFGTKDLVGFGVDKAHCALV 240 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA + Y+K TQ + P I E + + +D+A R NLE+ LSG E +L + + Sbjct: 241 AAGCLMQYVKDTQRIALPHIRAITLEHNEHAVILDAATRKNLELTVNLSGGFENTLAQVL 300 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D + T G RL RI +P+ + ++N+RL++I+ + + L + + L+ DV R + Sbjct: 301 DKTATPMGSRLLKRRIHTPVRNKDELNSRLNAISAIL-DVQLCGELHESLREIGDVERVI 359 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 +RL + P+D+ +R +++ + L+ L + + +++ +LP L+ L Sbjct: 360 ARLALCTARPRDLTRLRSALQA-LAPLHTLLNDASDPRIASIIKQSPELP-DLQALLERA 417 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + ++ P RDGG + G ++ LDE R+L + ++ L+L+ T I LKI +N Sbjct: 418 VIENPPVLIRDGGVIAPGYNSELDEWRNLSKGATDVLDQLELRERARTGISTLKIGYNRV 477 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 G+FIEV+ ++A ++ D +I RQT+ N R+ EL + E+++ + + AL +E Sbjct: 478 HGFFIEVSRANAHLVPAD------YIRRQTLKNNERYIIPELKEHEDKVLGSQSKALALE 531 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + +E L I E L + +A +D+ LA A NY +PI+ ++ N +K GR Sbjct: 532 KQLYEELFRFIAPHIEQLQIMAAALADLDVLNNLAERALTLNYAKPILCDNDNISIKQGR 591 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ +K+ PFIAN +L+ K+ ++TGPNMGGKST++RQ ALIV+MA Sbjct: 592 HPVVEQVMKE----PFIANPVELNAQR-----KMLIITGPNMGGKSTYMRQTALIVLMAH 642 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+ILN AT QS V++DEI Sbjct: 643 IGSYVPADSAKIGNIDRIFTRIGASDDLASGRSTFMVEMTETATILNNATAQSLVLMDEI 702 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGLS+A+AT ++L + L ATH+ ELT+L++ N L + N+ Sbjct: 703 GRGTSTYDGLSLAYATADHLASKISAKTLFATHYFELTELAEQTPGLVNVHLDAIEHNDT 762 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 I F+H V+ G A S+G+QV LAG+P +VI++A LK E N + + E Q Sbjct: 763 IAFMHTVLDGAASKSFGLQVAALAGVPRSVINQAKQKLKLLE-----NHQSVTAPNIEQQ 817 Query: 859 TKESKNNLSKNDKLFVE-KIKCLNLDEMSPLTALKTLYAVKA 899 N + VE ++ ++ D +SP A LY +KA Sbjct: 818 AFTFNNQAQQISPSEVELQLTAIDPDNLSPRQAHDLLYKLKA 859 >gi|167040248|ref|YP_001663233.1| DNA mismatch repair protein MutS [Thermoanaerobacter sp. X514] gi|256750830|ref|ZP_05491715.1| DNA mismatch repair protein MutS [Thermoanaerobacter ethanolicus CCSD1] gi|300914332|ref|ZP_07131648.1| DNA mismatch repair protein MutS [Thermoanaerobacter sp. X561] gi|307724432|ref|YP_003904183.1| DNA mismatch repair protein MutS [Thermoanaerobacter sp. X513] gi|166854488|gb|ABY92897.1| DNA mismatch repair protein MutS [Thermoanaerobacter sp. X514] gi|256750413|gb|EEU63432.1| DNA mismatch repair protein MutS [Thermoanaerobacter ethanolicus CCSD1] gi|300889267|gb|EFK84413.1| DNA mismatch repair protein MutS [Thermoanaerobacter sp. X561] gi|307581493|gb|ADN54892.1| DNA mismatch repair protein MutS [Thermoanaerobacter sp. X513] Length = 867 Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust. Identities = 326/894 (36%), Positives = 514/894 (57%), Gaps = 62/894 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY++IK D+++F+R+GDFYE+F++DA +A++ L I LT R + PM G Sbjct: 4 TPMMEQYLKIKEKYKDAILFFRLGDFYEMFYEDAEIAAKELEIALTGRDAGTEERAPMAG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A+ YI KLIK G+++AICEQ+E P +AK LV+R+VVR+ TPGT+ + + Sbjct: 64 VPYHAADFYIDKLIKKGYKVAICEQLEDPAKAK-----GLVKRDVVRIYTPGTIINPESM 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSN---HDRLISDIMRIDPREIIFSE 201 +NYL++V + R + I +D++TG ++ N R+ +I + P EII +E Sbjct: 119 DEKTNNYLVSVFKGRDNYGICAVDVTTGDLYATELKNCKDTKRVYDEITKYAPSEIIANE 178 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 L + +Y +F+ N A+ D+ I +N + + + A Sbjct: 179 DFLKNNKYIKIFKN-NNCAINIYEKQLDYEEKIKLIETQFNKKSEELGIKDKPYMANSLA 237 Query: 262 AAISYIKKTQM-----VNKPTIGYPEREDIQSTLFIDSAARSNLEILRT-LSGSREQSLL 315 A SY+++ Q +NK I ED S + +DS A NLEIL + + S++ SLL Sbjct: 238 ALFSYLQELQKTALKHINKLLI----YED-NSYMGLDSNAIKNLEILESNKNKSKKGSLL 292 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D ++T GGRL + + PL + I+ RL ++ + ++++L D+ Sbjct: 293 GVLDKTVTPMGGRLLKKWLEEPLLNKEHIDARLQAVEELFNDYKNRQDLKQLLNKIYDLE 352 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEE-----LRGAVEKLKKLPQS 430 R S++ PKD I+ +++ NL ++ E+ L+ EK L Q Sbjct: 353 RLASKIVYQSINPKDFISIK------LSLQNLPYIKEILEKFNSRLLKEICEKFDIL-QD 405 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 + + + + DD T ++G ++DG + ++D+ R + K IA+L+ + E+T IKN Sbjct: 406 IYELIDKSIKDDPSTQLKEGNIIKDGYNETVDKLRKASTEGKNWIANLEAEEREKTGIKN 465 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 L+I +N GY+IEVT S+ + +RFI +QT++N R+ T EL ++E I A Sbjct: 466 LRIGYNKVFGYYIEVTKSNIP------QVPERFIRKQTLANAERYVTPELKEIEETILGA 519 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 + +E + F + + Q + N ++ IAIID+ I+ A +A+ Y +PI+D S Sbjct: 520 EEKLIELEYQLFNEIREKVELQIVRIQNTAKYIAIIDVLISFAEVAETNRYIKPIVDYSD 579 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 ++K+GRHP++E S + F+AND D+ N + ++TGPNM GKST++RQ Sbjct: 580 RIVIKEGRHPVIETI----SDESFVANDIDIGSEN-----PIMIITGPNMAGKSTYMRQV 630 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALIV+MAQ+GS+VPASYA IGIVDK+F+RVG++D++ +G+STFMVEM E A+IL AT++ Sbjct: 631 ALIVLMAQIGSFVPASYAKIGIVDKIFTRVGASDDIFAGQSTFMVEMSEVANILKSATSK 690 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S +ILDE+GRGT+T DG+SIA A IEY+HE + + L ATH+HELT L +K N + Sbjct: 691 SLIILDEVGRGTSTYDGMSIAHAVIEYIHEKIKAKTLFATHYHELTKLEGKMKGVRNYNV 750 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM 850 V + + IIFL K++PG AD SYGIQV KLAGLP +++ RA +IL + E N K + Sbjct: 751 SVEEREDDIIFLRKIVPGGADKSYGIQVSKLAGLPYSIVERAKEILNSLE-----NDKAI 805 Query: 851 RLYYPEIQTKESKNNLSKNDKL------FVEKIKCLNLDEMSPLTALKTLYAVK 898 + E++ + ++ D ++ I ++D M+P+ AL LY +K Sbjct: 806 K---SELENASQQLAFTQIDIFSTAKDSLIDDIANCDVDNMTPIQALNYLYELK 856 >gi|307546337|ref|YP_003898816.1| DNA mismatch repair protein MutS [Halomonas elongata DSM 2581] gi|307218361|emb|CBV43631.1| DNA mismatch repair protein [Halomonas elongata DSM 2581] Length = 861 Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust. Identities = 321/887 (36%), Positives = 490/887 (55%), Gaps = 51/887 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY++IK +PD L+FYRMGDFYELFFDDA A+ L ITLT+RG+ GK IPM G Sbjct: 9 TPMMAQYLKIKREHPDVLLFYRMGDFYELFFDDAKRAAALLDITLTQRGQSAGKPIPMAG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A Y+ +L+ G +AICEQ+ P K V R VVR+VTPGTL ++ LL Sbjct: 69 VPYHSAEGYLARLVAAGESVAICEQMGDP-----NTTKGPVERKVVRIVTPGTLYDEALL 123 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSEKEL 204 N ++A+ W +AW+++S+G F + ++++ R+DP E++ +E L Sbjct: 124 DARRDNLVVALHAAGEHWGLAWLELSSGRFSVLEVEGEAEAMAELTRLDPAELLVAES-L 182 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAA 263 + L Q + FD + + D + + + FG + + TAA Sbjct: 183 TLPPGLEAHRGLRR----QNDWLFDLESATRTLCDQFAVQDLRGFGCAHLEAAITAAGVL 238 Query: 264 ISYIKKTQMVNKP---TIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 I Y + TQ P IG R+D + ID+A+R NLEI L G + +L +D Sbjct: 239 IDYARDTQRSQLPHVTAIGVESRDD---AVVIDAASRRNLEIGVNLGGGTDNTLASVLDT 295 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G RL + PL D +++ R ++ + + P ++ LK+ DV R L+R Sbjct: 296 TSTAMGSRLLKRWLNRPLRDRAQVSGRQAAVAALLDGDGFVAP-REALKAIGDVERILAR 354 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + + P+D+A +RD + + + + D L ++ P +L TLS L Sbjct: 355 VALYSARPRDLARLRDALNALPELEAELARFDEGTALDDLKRRIHPYP-TLADTLSRALM 413 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 ++ P RDGG + +G DA LDE R L + + + L+ + E T + LK+ +N G Sbjct: 414 ENPPVVIRDGGVIAEGFDAELDEHRGLAEHAGDYLIELETRERERTGLPGLKVGYNRVHG 473 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IE+ + A D +I RQT+ N RF EL + E++ +A + AL E Sbjct: 474 YYIEIPRAQARDAPVD------YIRRQTLKNAERFIIPELKEFEDKALSAKSRALAREKL 527 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 ++ L + + + +L Q +A +D+ LA A+ ++ RP + + F ++ GRHP Sbjct: 528 LYDGLLDDLNAELSTLQATGQALAALDVLATLAERARALDFVRPELPETAGFSIRGGRHP 587 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE Q S PF+ ND ++ + ++ ++TGPNMGGKST++RQ ALI ++A G Sbjct: 588 VVE----QVSETPFVPNDLNMD-----DERRMLVITGPNMGGKSTYMRQAALITLLAHTG 638 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA A IG VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT+ S V++DEIGR Sbjct: 639 SFVPADAASIGPVDRIFTRIGSSDDLAGGRSTFMVEMTETANILHNATDHSLVLMDEIGR 698 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GT+T DGLS+AWA+ E L + R L ATH+ E+T L++ N L ++ EGI+ Sbjct: 699 GTSTFDGLSLAWASAEQLTRS-RAFTLFATHYFEMTALAEQASGVANVHLTATEHKEGIV 757 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 F+H+V G A SYG+QV +LAG+P VI+RA + L + E Q+++ + T Sbjct: 758 FMHRVEDGPASQSYGLQVAQLAGVPQAVIARAREKLASLE------QQEIDQGQRSLSTD 811 Query: 861 ESKNNLS--KNDKLF-------VEKIKCLNLDEMSPLTALKTLYAVK 898 +S + S + LF +E + L LD+M+P AL+ LY K Sbjct: 812 DSAASGSAPQQADLFASAPHPMLESLGSLGLDDMTPRQALEWLYHWK 858 >gi|268326266|emb|CBH39854.1| DNA mismatch repair protein [uncultured archaeon] Length = 864 Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust. Identities = 315/887 (35%), Positives = 503/887 (56%), Gaps = 42/887 (4%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTK--RGKHLGK 79 + TPMM+QY +IK D+++F+R+GDFYE F +DA +AS+ L I LT RGK Sbjct: 1 MAERTPMMKQYYQIKEKYSDAIIFFRVGDFYETFGEDAKVASKELNIALTATGRGKGATG 60 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H YI++LI G+++AICEQIE + +K + +R VVRL+TPGT+ Sbjct: 61 KIPMAGVPYHAVTPYIKQLIMKGYKVAICEQIED------KASKKIEKREVVRLITPGTI 114 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREII 198 ED L SNYLM V + + IA +D+STG F ++ + L++++ R+ P EII Sbjct: 115 IEDAFLEERHSNYLMCVNLLGGKVGIAIVDVSTGEFSLTELEDESSLLNELERVKPAEII 174 Query: 199 FS---EKELSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFG-SFS 253 E EL L +++ + +FD+ + + + +++ + ++D FG S Sbjct: 175 LPDSLELELE----------LDTCTISRYDDYYFDYKNAYTTLINHFGVISLDGFGCSDL 224 Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQ 312 +V TAA A SY++ TQ I P+ I + +DS NLEI + G++ Sbjct: 225 KVGITAAGAVTSYLRDTQKRILAHIKSPKTFFISDYMVLDSVTVRNLEIFNNIRDGTQRG 284 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 +L+ +D ++TG G RL + + PL D +I +R + +N F + +L ++ + K Sbjct: 285 TLVSVLDKTLTGMGSRLLKKNLQFPLLDPGEIRSREEVVNAFYGDILLRESLKTVFKEIS 344 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS-L 431 D+ R +SR+ G +D+ ++ + I +L LKN ++++ + LK S + Sbjct: 345 DMERIISRVSYGNANARDLIALKRSLMQ-IEVLRETLKNSRAKKIKDVLRALKSSTFSKV 403 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + + ++ P ++GG +++ + LDE R+++ +R +A + T IK+L Sbjct: 404 VALVERAIIEEPPITVKEGGLIKETFNTELDELRTIKHAGRRWLAEFEEHEKANTGIKSL 463 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 K+ +N GY+IEV S + + +I +QT++ R+ T EL E + +A Sbjct: 464 KVGYNKVFGYYIEVRKSWIAKVPTT------YIRKQTLTEAERYITEELKVYEAKALSAE 517 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 +E E FE + + +Q + + A+ IA +D+ +A A +A YC P++D S Sbjct: 518 ERIKELEYELFERIRKEVAKQGKEIQEAANSIAELDMLLAFAEVAAGNGYCCPVVDESDE 577 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 ++ +GRHP+VEK ++ F+ N+ L DKN+ +L ++TGPNM GKSTF+RQ A Sbjct: 578 IVIVEGRHPVVEKGVRD----GFVPNNIQL----DKNN-RLMIITGPNMSGKSTFMRQTA 628 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LI +MAQ+GS+VPA A +G+VD++F+RVG+ D+L+ G+S+FMVEM ETA+ILN AT +S Sbjct: 629 LITLMAQLGSFVPAKEARVGVVDRIFTRVGAYDDLSMGQSSFMVEMSETANILNNATERS 688 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 +ILDEIGRGT+TLDG+SIAW+ EY+HE + L ATHF+ELT+L+ SL + Sbjct: 689 LIILDEIGRGTSTLDGVSIAWSVAEYVHERINAKTLFATHFYELTELADSLDSTKCFNVS 748 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR 851 + + + I F+ KV+ G SYGIQV KLAGLP VI A +L E+ + Sbjct: 749 IKEVADEIFFVRKVVEGRGTKSYGIQVAKLAGLPEEVIESAKSMLIRMEREVEKESERKD 808 Query: 852 LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ E K VE+++ +NL+++SP+ AL LY +K Sbjct: 809 EGERGVKKAEVKKEYVVQTHPVVEELRAINLEKISPIEALNKLYEMK 855 >gi|312143591|ref|YP_003995037.1| DNA mismatch repair protein MutS [Halanaerobium sp. 'sapolanicus'] gi|311904242|gb|ADQ14683.1| DNA mismatch repair protein MutS [Halanaerobium sp. 'sapolanicus'] Length = 868 Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust. Identities = 322/888 (36%), Positives = 513/888 (57%), Gaps = 47/888 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY +K + D+++F+R+GDFYE+F +DA A+R L I LT R K G+ I M G Sbjct: 5 TPMMQQYYNLKRKHQDAILFFRLGDFYEMFGEDAKKAARLLDIALTSRNKGGGEKIDMAG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI+KLIK G ++AICEQ+E P EA +V R+V+R++TPGT+ E+++L Sbjct: 65 VPAHSAASYIEKLIKKGIKVAICEQLEDPSEAS-----GIVERDVIRVITPGTVIENEIL 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIF---KISTSNHDRLISDIMRIDPREIIFSEK 202 + ++NYL A + ++ + A+ DISTG F + S D+L +I RI P+E++ E Sbjct: 120 ADNENNYLAAAFKYQSNYGFAYTDISTGEFYLTEFSAEAADKLSDEINRIAPQELLTDEN 179 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 + L G F++ E + ++NI +++ FG AA Sbjct: 180 TAKMDKINQLQAQYGFTINETEKKDFNYLKEE--MLSHFNINSLEGFGCEDMETAVYAAG 237 Query: 263 AI-SYIKKTQ--MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTI 318 I +Y+K+TQ V + T +P ++ + +D+A R NLE+ +T+ ++ SLL + Sbjct: 238 QILAYLKQTQKRTVKQITTLHPYY--LEDYMVLDAATRRNLELTKTIRDNKTSGSLLSIV 295 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D +IT GGR + I PL + +I R DSI + N ++N + ++ D+ R + Sbjct: 296 DQTITSMGGRTIKKWINQPLINQKEIVKRHDSIEELLDNFRILNKCRDLMADIYDLERIM 355 Query: 379 SRLKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 S++ +D+ +R+ + G+ L K +L E++ + L + + K + Sbjct: 356 SKITYQSANGRDLIALRNSLAKLPGLEKLIADFKTELFSEIQDGFDSL----EDIFKLID 411 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + D+ PT +GG ++D + LDE RSL +Q K I++LQ + E+T I LK+ N Sbjct: 412 DSIIDEPPTTITEGGIIKDNYNKKLDELRSLANQGKDWISALQKEEREKTGINTLKVGFN 471 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY++EVT+S + +R+ +QT+SN R+ +L + E + A Sbjct: 472 KVFGYYLEVTNSHLDKVP------ERYERKQTLSNSERYIIPKLKEKEAEVLGAEEKIND 525 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E + F + + I ++ + ++ + +IA ID+ ++ A LA E NY RP I++ I+K+ Sbjct: 526 LEYKLFVEIRDEIAQEVDRINKTASLIAEIDVLMSFAFLAIENNYNRPEINSGEEIIIKN 585 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VEK +Q F+ANDC L D+ + ++TGPNM GKST++RQ ALIV++ Sbjct: 586 GRHPVVEKMFSEQ----FVANDCYL----DQTKQRFIIITGPNMSGKSTYMRQIALIVLL 637 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+GS+VPA A IG+ D++F+RVG++D+L +G+STFMVEM E A+I+N +T++S +ILD Sbjct: 638 AQVGSFVPADEATIGLTDRIFTRVGASDDLTTGQSTFMVEMNEVANIVNNSTDRSLIILD 697 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 E+GRGT+T DG+SIAWA EYL+ R R L ATH+HELT L N + V + Sbjct: 698 EVGRGTSTYDGVSIAWAVSEYLNNPERIGARTLFATHYHELTRLEDEYDGIKNYNVLVKE 757 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 ++G+ FLH++ G AD SYGI+V +LAGLP +I A IL E+ N K M L Sbjct: 758 DSDGVHFLHRIGEGRADDSYGIEVARLAGLPEEIIISAQKILSRLEE----NNK-MPLRK 812 Query: 855 PEIQTKESKNN----LSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E ++SK+ + ++K+ ++ +M+PL A+ LY +K Sbjct: 813 REKSLQDSKHQQLPLFEDKENPILKKLDEKDIMDMTPLDAMNFLYKLK 860 >gi|320354737|ref|YP_004196076.1| DNA mismatch repair protein MutS [Desulfobulbus propionicus DSM 2032] gi|320123239|gb|ADW18785.1| DNA mismatch repair protein MutS [Desulfobulbus propionicus DSM 2032] Length = 889 Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust. Identities = 329/891 (36%), Positives = 495/891 (55%), Gaps = 41/891 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRG-KHLGKDIPMC 84 TPM++QY+EIK P +++FYRMGDFYE+FF+DA++A++ LGITLT R K IPMC Sbjct: 8 TPMLQQYLEIKEQYPGTILFYRMGDFYEMFFEDAVVAAKVLGITLTSRSHKDEANKIPMC 67 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H + Y+ K++K G+R+AICEQ+E P EAK +VRR V+R+VTPG T+DQL Sbjct: 68 GVPFHAVSGYLGKMVKAGYRVAICEQVEDPKEAK-----GIVRREVIRVVTPGVTTDDQL 122 Query: 145 LSPTDSNYLMAVARIRTE-----WAIAWIDISTGIFKI-----STSNHDRLISDIMRIDP 194 L Y+ A+ + +A +DISTG F+I S + L+ R+ P Sbjct: 123 LDEKADCYVCALVVQKKSTKEHLAGLALLDISTGRFQICEVSFSPKDPGALVDVFSRLRP 182 Query: 195 REIIFSEKEL-SHAEYKSLF-ETLGNVAV-AQPNVFFDHSISESRIADYYNITTVDTFGS 251 E++ + EL + A L + +G + + A+P+ F+ + + + +++ + FG Sbjct: 183 AELLIPQAELDTLAPLTHLLSQQMGQLCLTARPDFHFETVTAIATLTEHFRTANLAGFGC 242 Query: 252 FSQVEKT-AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGS 309 + AA A + Y+++TQ + L ID A+R NLE+ TL G Sbjct: 243 DAYTAAIDAAGALLLYLRETQKSELAHVKRIMPLHQSGYLIIDDASRRNLELTETLVGGQ 302 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 R+ SLL T+D + T G RL + PL D +I RLD + I+ P + N ++ +L Sbjct: 303 RQGSLLATLDRTATPMGARLLRRWLLFPLQDRKEILRRLDGVEELIEQPAVRNTLRSLLD 362 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 S D+ R SRL +G G +D++ I+ + + + L+ L LR E+ L Sbjct: 363 SIYDLERLSSRLVLGHGNARDLSAIKTSL-AQLPDLHHQLNGCTSSLLRAIAERFDIL-D 420 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 L + + S + DD P R+G +R+ +A LD L K++I L+ + + I Sbjct: 421 DLHRLIDSAIRDDAPITLREGNLIREDYNAELDHLLRLLRDGKQMILDLEHAERQRSGIA 480 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LK+ +N GY+ E++ S E + FI +QT+ N RF T EL +LEN I Sbjct: 481 KLKVGYNKVFGYYFEISRSQTQ------ELPEYFIRKQTLVNAERFITPELKELENAIVT 534 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 A + L +E F + +++ L + +A +D+ A +A YCRP I+ + Sbjct: 535 AHDRRLELEYALFLDIREHLVQNDHRLLQVAAQLAELDVLACFAEVATRYRYCRPQINTN 594 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 + +GRHP++E+++ F+ ND L D+ +L ++TGPNM GKST LRQ Sbjct: 595 RTITISEGRHPVIERSM---DPGRFVPNDVHL----DQERHELLIITGPNMAGKSTVLRQ 647 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALIV+MA +G +VPA A + IVD++F+RVG+ D+L G+STFMVEM ETA+ILN AT Sbjct: 648 TALIVLMAHIGCFVPAESADLCIVDRIFTRVGAMDDLRRGQSTFMVEMNETANILNNATE 707 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC--RGLLATHFHELTDLSKSLKRFHN 787 S VILDEIGRGT+T DGL+IAWA E L N + L ATH+HELTDL+ + + N Sbjct: 708 DSLVILDEIGRGTSTYDGLAIAWAVAEELAHKNGLGIKTLFATHYHELTDLAATSDKIQN 767 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ 847 ++ V + N+ IIFLHK++ G + SYGIQV LAG+P VI+RAY ILK E+ Q Sbjct: 768 YSIAVKEWNDSIIFLHKLVKGATNRSYGIQVAALAGVPEHVITRAYTILKNIEQGEFTLQ 827 Query: 848 KDMRLYYPEIQTKESKNNL---SKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 ++ + K++ L S + ++ +N D ++P AL +Y Sbjct: 828 GQPKIAAGKSGKKQNPMQLPLFSPATHPLTDLLRTINPDLLTPKQALDFIY 878 >gi|91773655|ref|YP_566347.1| DNA mismatch repair protein [Methanococcoides burtonii DSM 6242] gi|121691668|sp|Q12VC9|MUTS_METBU RecName: Full=DNA mismatch repair protein mutS gi|91712670|gb|ABE52597.1| DNA mismatch repair protein MutS [Methanococcoides burtonii DSM 6242] Length = 887 Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust. Identities = 318/896 (35%), Positives = 511/896 (57%), Gaps = 52/896 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL-GKDIPMC 84 TP M+QY + K + D+L+F+RMGDFYE F +DA + ++ L ITLT RGK + G+ +P+ Sbjct: 5 TPAMKQYYDAKKQHSDALIFFRMGDFYESFGEDAKIIAKELEITLTTRGKDIEGEKMPLA 64 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G+P H ++Y+ +LIK G+++AICEQ+E P +AK +++R VVR+VTPGT + + Sbjct: 65 GIPYHALDNYLPRLIKKGYKVAICEQLEDPKKAK-----GIIKRGVVRVVTPGTAIDTSM 119 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST----SNHDRLISDIMRIDPREIIFS 200 + +NYLM+++ ++ ++++D+STG F + S +DR+ S+ R+ P E I S Sbjct: 120 FTDPSNNYLMSISGGDGDYGVSFLDVSTGEFLTTQFADKSPYDRIASEAARMRPSECIIS 179 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 S + L + + FD S + ++N++T++ G T++ Sbjct: 180 RTMFSDERLVERLKELNVLVQGFKDEAFDVDSSRKLLERHFNVSTLEGMGCAGLPYATSS 239 Query: 261 A-AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTI 318 A AA+ Y TQM + + +DS NLEI++ + G + S+LK + Sbjct: 240 AGAALDYALTTQMRELGHVSELSTYSDSEFMMLDSITLRNLEIVKNVRGEGNDTSILKVL 299 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D + T GGRL + + PL + I+ RLD++ + +L ++ L D+ R + Sbjct: 300 DDTNTPMGGRLLQKWLLKPLINVDSIDHRLDALECLANDTMLRFDVRSHLSFVKDIERLI 359 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEEL---RGAVEKLKKLPQSLEKTL 435 R+ G +D+ ++ + S I+ + E L R + ++L +++ K + Sbjct: 360 GRVVYGNSNARDLIALKRSLGSVPQIVESMGDDPGCEMLINIRDGLLGFEQL-ENIVKLI 418 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + D+ P R+GG +R G + LDE + + K IAS Q K + T IK+LK+ + Sbjct: 419 DDAIVDEPPVSVREGGMIRSGYNEKLDELKGMSTGGKTWIASFQQKERDRTGIKSLKVGY 478 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+IE+T S+ + + D +I +QTM N RF T EL + E+ I +A Sbjct: 479 NRVFGYYIEITKSNIAQIPDD------YIRKQTMRNAERFYTPELKEWEDVILSADEKIT 532 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E E F +++ I + L + +I +D + +LA +A N+ RP I + +++ Sbjct: 533 ALENELFTEITSRIASHASDLQRIAVLIGQLDCTASLAEVAVNNNFVRPNITSDCKILIR 592 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 +GRHP+VEKT++ F+ ND ++ C +++ L+TGPNM GKST++RQ +LIVI Sbjct: 593 EGRHPVVEKTVRGG----FVPNDTEMDCVDEQ----FLLITGPNMAGKSTYMRQVSLIVI 644 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ GS+VPAS+A IGIVD++F+RVG+ D+LASG+STFMVEM+E A+ILN AT +S V+L Sbjct: 645 MAQAGSFVPASHASIGIVDRVFTRVGAFDDLASGQSTFMVEMVELANILNNATPKSLVLL 704 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQVS 793 DEIGRGT+T DG SIA A +EY+H R R L ATH+H+LT++S SLKR N + V Sbjct: 705 DEIGRGTSTYDGYSIAKAVVEYIHNKGRVGVRSLFATHYHQLTNISSSLKRVKNYHIAVK 764 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE------------- 840 + + ++FL K++PG D SYGI V +LAG+P+ V RA ++L+ E Sbjct: 765 EDGDDLVFLRKIVPGATDKSYGIHVARLAGVPHKVTQRAKEVLQDIEDESVISKESDSKR 824 Query: 841 --KLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 K + L+ PE S +++ D + VE++K L+++ M+P+ AL L Sbjct: 825 GRKKKSAQYTQLMLFDPE----GSSAPVAEPDPV-VEELKELDVNSMTPIEALNKL 875 >gi|89092115|ref|ZP_01165070.1| DNA mismatch repair protein [Oceanospirillum sp. MED92] gi|89083850|gb|EAR63067.1| DNA mismatch repair protein [Oceanospirillum sp. MED92] Length = 854 Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust. Identities = 323/882 (36%), Positives = 485/882 (54%), Gaps = 35/882 (3%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 ++N TPMM+QY+ IK+ +PD LVFYRMGDFYELF+DDA A+ L I+LT RGK G Sbjct: 3 KQNASGHTPMMQQYLRIKAQHPDQLVFYRMGDFYELFYDDAKKAAELLDISLTARGKSAG 62 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM G+P H A Y+ K+++ G + ICEQ+ P +K V R V R++TPGT Sbjct: 63 EPIPMAGIPYHAAEGYVGKIVRAGESVVICEQVGDPATSK-----GPVERAVARIITPGT 117 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREI 197 ++++ LL N L+A+ ++ E+ A +DI++G F + N D LIS++ R+ P E Sbjct: 118 VSDEALLDENRDNLLVALNQVGDEYGFAIVDIASGRFSLMQVDNQDTLISELERLRPSET 177 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS-FSQVE 256 +F+E+ + +L E + P F+ + + + + + FG V Sbjct: 178 LFNEE----SPLATLLEKRKGLRPQAP-WHFESDTANELLRQQFKVKDLSGFGCDHLPVA 232 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 TAA + Y K TQ P I + E + +D+A R NLEI + LSG + +L K Sbjct: 233 ITAAGCLLQYAKDTQRTALPHIRRIQIEQHNDCVALDAATRKNLEIDQNLSGGFDNTLAK 292 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 ID T G RL + P+ D + R SI + +QN IQK LK+ D+ R Sbjct: 293 VIDKCRTPMGSRLLRRWLHRPIQDRATLLARQASIQW-LQNNYKFEEIQKPLKNIGDIER 351 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 L+R+ + P+D+ ++ + S + + D P A++ + + P+ L L Sbjct: 352 ILARIALRSARPRDLERLKSALASLPELQSQLKTTDAPLISELAIQ-ISQFPE-LSDLLL 409 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + D+ P RDGG + +G D LDE R + + + + L+ + E T I LK+ +N Sbjct: 410 KAIIDNPPVVIRDGGVIAEGFDEELDELRGISENAGAYLIELETRERERTGIATLKVGYN 469 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GYFIE+ + + L + +I RQT+ N R+ T EL + E++ +A + AL Sbjct: 470 RVHGYFIEIGKAQNAELPAE------YIRRQTLKNAERYITPELKEFEDKALSAKSRALA 523 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 E +E L + + L ++S IA +D+ LA A +Y P + ++ Sbjct: 524 REKALYEQLLETLAAELSPLQDSSAAIAELDVLNNLAERASTLDYVPPTLTEEPQIKIQR 583 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE L PF+AND DL N K+ ++TGPNMGGKST++RQ ALI ++ Sbjct: 584 GRHPVVETVL----DDPFVANDLDLD-----NERKMLIITGPNMGGKSTYMRQAALITLL 634 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A +GSYVPAS A IGIVDK+F+R+GS+D+LA GRSTFMVEM ETA+I++ AT +S V++D Sbjct: 635 AHIGSYVPASAATIGIVDKIFTRMGSSDDLAGGRSTFMVEMTETANIMHNATARSLVLMD 694 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 E+GRGT+T DGLS+AWA E L L ATH+ ELT L N L + N Sbjct: 695 EVGRGTSTFDGLSLAWACAENLARETNAFTLFATHYFELTSLPDQAANVFNVHLTAVEHN 754 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 + I+FLH+V G A SYG+QV +LAG+P VI +A L E+ + M P Sbjct: 755 DHIVFLHEVKDGPASQSYGLQVAQLAGVPLNVIEQAKAKLNQLEQDVAVGAQ-MIAPPPP 813 Query: 857 IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +Q + + + ++++K ++ D++SP AL+ LYA+K Sbjct: 814 VQN----DMFAAPEHKAIKELKKISPDDLSPKQALEHLYALK 851 >gi|268325178|emb|CBH38766.1| DNA mismatch repair protein [uncultured archaeon] Length = 864 Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust. Identities = 315/887 (35%), Positives = 502/887 (56%), Gaps = 42/887 (4%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTK--RGKHLGK 79 + TPMM QY +IK D+++F+R+GDFYE F +DA +AS+ L I LT RGK Sbjct: 1 MAERTPMMEQYYQIKEKYSDAIIFFRVGDFYETFGEDAKVASKELNIALTATGRGKGATG 60 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H YI++LI G+++AICEQIE + +K + +R VVRL+TPGT+ Sbjct: 61 KIPMAGVPYHAVTPYIKQLIMKGYKVAICEQIED------KASKKIEKREVVRLITPGTI 114 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREII 198 ED L SNYLM V + + IA +D+STG F ++ + L++++ R+ P EII Sbjct: 115 IEDAFLEERHSNYLMCVNLLGGKVGIAIVDVSTGEFSLTELEDESSLLNELERVKPAEII 174 Query: 199 FS---EKELSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFG-SFS 253 E EL L +++ + +FD+ + + + +++ + ++D FG S Sbjct: 175 LPDSLELELE----------LDTCTISRYDDYYFDYKNAYTTLINHFGVISLDGFGCSDL 224 Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQ 312 +V TAA A SY++ TQ I P+ I + +DS NLEI + G++ Sbjct: 225 KVGITAAGAVTSYLRDTQKRILAHIKSPKTFFISDYMVLDSVTVRNLEIFNNIRDGTQRG 284 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 +L+ +D ++TG G RL + + PL D +I +R + +N F + +L ++ + K Sbjct: 285 TLVSVLDKTLTGMGSRLLKKNLQFPLLDPGEIRSREEVVNAFYGDILLRESLKTVFKEIS 344 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS-L 431 D+ R +SR+ G +D+ ++ + I +L LKN ++++ + LK S + Sbjct: 345 DMERIISRVSYGNANARDLIALKRSLMQ-IEVLRETLKNSRAKKIKDVLRALKSSTFSKV 403 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + + ++ P ++GG +++ + LDE R+++ +R +A + T IK+L Sbjct: 404 VALVERAIIEEPPITVKEGGLIKETFNTELDELRTIKHAGRRWLAEFEEHEKANTGIKSL 463 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 K+ +N GY+IEV S + + +I +QT++ R+ T EL E + +A Sbjct: 464 KVGYNKVFGYYIEVRKSWIAKVPTT------YIRKQTLTEAERYITEELKVYEAKALSAE 517 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 +E E FE + + +Q + + A+ IA +D+ +A A +A YC P++D S Sbjct: 518 ERIKELEYELFERIRKEVAKQGKEIQEAANSIAELDMLLAFAEVAAGNGYCCPVVDESDE 577 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 ++ +GRHP+VEK ++ F+ N+ L DKN+ +L ++TGPNM GKSTF+RQ A Sbjct: 578 IVIVEGRHPVVEKGVRD----GFVPNNIQL----DKNN-RLMIITGPNMSGKSTFMRQTA 628 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LI +MAQ+GS+VPA A +G+VD++F+RVG+ D+L+ G+S+FMVEM ETA+ILN AT +S Sbjct: 629 LITLMAQLGSFVPAKEARVGVVDRIFTRVGAYDDLSMGQSSFMVEMSETANILNNATERS 688 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 +ILDEIGRGT+TLDG+SIAW+ EY+HE + L ATHF+ELT+L+ SL + Sbjct: 689 LIILDEIGRGTSTLDGVSIAWSVAEYVHERINAKTLFATHFYELTELADSLDSTKCFNVS 748 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR 851 + + + I F+ KV+ G SYGIQV KLAGLP VI A +L E+ + Sbjct: 749 IKEVADEIFFVRKVVEGRGTKSYGIQVAKLAGLPEEVIESAKSMLILMEREVEKESERKD 808 Query: 852 LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ E K VE+++ +NL+++SP+ AL LY +K Sbjct: 809 EGERGVKKAEVKKEYVVQTHPVVEELRAINLEKISPIEALNKLYEMK 855 >gi|238916921|ref|YP_002930438.1| DNA mismatch repair protein MutS [Eubacterium eligens ATCC 27750] gi|238872281|gb|ACR71991.1| DNA mismatch repair protein MutS [Eubacterium eligens ATCC 27750] Length = 884 Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust. Identities = 325/900 (36%), Positives = 514/900 (57%), Gaps = 52/900 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD--IPM 83 +PMM+ Y+ K+ D ++FYR+GDFYE+FFDDAL+ S+ L +TLT GK G++ PM Sbjct: 5 SPMMQHYLATKAEYKDCILFYRLGDFYEMFFDDALVVSKELELTLT--GKDCGQEERAPM 62 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVP H A YI +L+ GH++AICEQ+E P +AK +V+R V+++VTPGT Q Sbjct: 63 CGVPFHAAETYINRLVSNGHKVAICEQMEDPKQAK-----GIVKREVIKVVTPGTNLNSQ 117 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEK 202 L T +NYLM++ + +A D STG F ++ LI +I + P EII +E Sbjct: 118 ALDETKNNYLMSIVYLGDVLGVAIADYSTGDFFVTEIETGAELIDEINKFVPSEIILNEY 177 Query: 203 -ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAA 260 +S + + E L N +FD ++++ +++++ +D G V AA Sbjct: 178 FAMSGIDLTFISEKLSISVSTLENWYFDDDSCKAKLKEHFHVNMLDGLGIKDYPVGIDAA 237 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTID 319 A + Y+ +TQ + I + IDS++R NLE++ T+ +++ SLL +D Sbjct: 238 GALLIYLTQTQKSDMSHITSIVPYTTGKYMLIDSSSRRNLELVETMREKQKKGSLLWVLD 297 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G R + PL + +I R D+I N I I++ L D+ R ++ Sbjct: 298 KTKTAMGARALRNLVLQPLINRDEIIRRQDAIEELSDNAIDREEIREYLGPIYDLERIMT 357 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 ++ P+D+ ++ + +I N K D+ R E++ L + L + + Sbjct: 358 KISCKSANPRDLIAFKNSLEMIPHIKNQIGHFKCDV---FRQCFEQMDDL-KDLYNLVDT 413 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + DD P RDGG ++DG A DE R+ + + K +A L+ + E+T IKNLK+K+N Sbjct: 414 AIIDDPPITMRDGGMIKDGFSAEADELRNAKIKGKEWLAELESREKEKTGIKNLKVKYNK 473 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY++EVT+S +++ + ++ +QT++ R+TT EL LE+ I A + + Sbjct: 474 VFGYYLEVTNSFKNLVPAE------WVRKQTLTGSERYTTDELKHLEDIILGAEDKLYSL 527 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + F + + + + N ++ +A+ID+ +L+++A + N+ RP I+ +K+G Sbjct: 528 EYDLFCEVRERVAAEVVRIQNTAKAVAMIDVYASLSVVATQNNFIRPKINEKGIIDIKNG 587 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VEK + S+ FIAND L D ++ ++TGPNM GKST++RQ ALIV+MA Sbjct: 588 RHPVVEKMI---SNDMFIANDTYL----DNGMNRISIITGPNMAGKSTYMRQTALIVLMA 640 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q GS+VPA A+I IVD++F+RVG++D+LASG+STFMVEM E A+IL AT +S +ILDE Sbjct: 641 QTGSFVPADSANICIVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATPKSLIILDE 700 Query: 738 IGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 IGRGT+T DGLSIAWA +EY+ T + L ATH+HELT+L +L +N + V ++ Sbjct: 701 IGRGTSTFDGLSIAWAVVEYIANTKYLGAKTLFATHYHELTELEGTLDGVNNYCIAVKEN 760 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISR----------------AYDILKTF 839 + I+FL K++ G AD SYGIQV KLAG+P+ V++R A DI + Sbjct: 761 GDDIVFLRKIVKGGADKSYGIQVAKLAGVPDVVLNRAKELVVDLSDADISQKAKDIAQYS 820 Query: 840 EKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 +KL N K ++ E++ + + +D V I L++ M+P+ AL TLY ++ Sbjct: 821 KKLDKMNDKYRKVNDLEVKQMSLFDTVKDDD--IVTDIMNLDISNMTPIDALNTLYKLQG 878 >gi|323486939|ref|ZP_08092254.1| hypothetical protein HMPREF9474_04005 [Clostridium symbiosum WAL-14163] gi|323399711|gb|EGA92094.1| hypothetical protein HMPREF9474_04005 [Clostridium symbiosum WAL-14163] Length = 886 Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust. Identities = 328/899 (36%), Positives = 504/899 (56%), Gaps = 61/899 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM QY+E K PD ++FYR+GDFYE+FF+DAL ASR L ITLT + L + PMCG Sbjct: 5 SPMMTQYLETKKQYPDCILFYRLGDFYEMFFEDALTASRELEITLTGKDCGLEERAPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H Y+ KL++ G+++AI EQ+E P AK LV+R V+R+VTPGT+T Q L Sbjct: 65 VPYHALEGYLSKLVQKGYKVAIGEQVEDPKTAK-----GLVKREVIRVVTPGTITNSQAL 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREIIFSEK-E 203 + +NYLM + + I+ D+STG + ++ +R LI +I + P EII +E Sbjct: 120 EESKNNYLMGIVYTDGIFGISVADVSTGDYLVTEVKSERNLIDEIYKFSPSEIICNEAFY 179 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAA 262 +S + L L V N FF + D++++ ++ G S + AA A Sbjct: 180 MSGIDLDDLKNRLHAVISDLDNRFFSDEFCRKLLRDHFHVENLEGLGLSDYETGTIAAGA 239 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTLSGSREQ-SLLKTI 318 + Y+ +TQ K ++ + R +T + +D++ R NLE++ TL +++ +LL + Sbjct: 240 VLQYLYETQ---KNSLEHLTRITPYTTGQFMMLDTSTRRNLELIETLREKQKRGTLLWVL 296 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D + T G R+ + PL +I R ++I N I I + L D+ R L Sbjct: 297 DKTKTAMGARMLRSFVEQPLIHKEEILKRQNAIEELNMNYISREEICEYLNPIYDLERLL 356 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLS 436 R+ P+D+ R+ + +I ++ +++L E+ G ++ L + L+K + Sbjct: 357 GRISYKTANPRDLISFRNSLEMLPHIKHILKEFRSELLTEIEGQLDPL----EDLKKLID 412 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + DD P RDGG ++DG D R + + K +A L+ K E T IKNLKIK+N Sbjct: 413 EAIIDDPPVSVRDGGIIKDGFHEEADRLRHAKTEGKTWLAELEQKEKESTGIKNLKIKYN 472 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+ EVT+S KDL D FI +QT++N R+TT L +LE+ I A + Sbjct: 473 KVFGYYFEVTNSF-----KDL-VPDYFIRKQTLTNAERYTTDRLKELEDVIMGAEDKLFS 526 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E E F + + I + + + + +A+ D+ +L+++A NY +P I+ +K+ Sbjct: 527 LEYELFCQVRDGIAAEVKRIQETAHAVALTDVLTSLSVVAIRNNYVKPSINEKGIIHIKN 586 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE+ + S F+AND L D ++ ++TGPNM GKST++RQ ALI +M Sbjct: 587 GRHPVVEQMM---SGGMFVANDTYL----DNGKNRVSIITGPNMAGKSTYMRQTALITLM 639 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+GS+VPA A IG+ D++F+RVG++D+LASG+STFMVEM E A+IL AT S +ILD Sbjct: 640 AQVGSFVPADEADIGLCDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATRSSLLILD 699 Query: 737 EIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 EIGRGT+T DGLSIAWA +EY+ T + L ATH+HELT+L ++ +N + V + Sbjct: 700 EIGRGTSTFDGLSIAWAVVEYISNTKLLGAKTLFATHYHELTELEGTMSGVNNYCIAVKE 759 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 + I+FL K++ G AD SYGIQV KLAG+P VI RA ++++ + D+ Sbjct: 760 QGDDIVFLRKIVKGGADKSYGIQVAKLAGVPELVIERAKELVEEL------SDADITARA 813 Query: 855 PEIQTKE----SKNNLSKNDKL---------------FVEKIKCLNLDEMSPLTALKTL 894 EI + LSK D++ ++++ L ++ MSP+ AL TL Sbjct: 814 KEIAENGPGIVAHKKLSKPDEVDLLQMSIFDTVSEEDIIKELMELEINRMSPIDALTTL 872 >gi|197301744|ref|ZP_03166814.1| hypothetical protein RUMLAC_00470 [Ruminococcus lactaris ATCC 29176] gi|197299184|gb|EDY33714.1| hypothetical protein RUMLAC_00470 [Ruminococcus lactaris ATCC 29176] Length = 877 Score = 539 bits (1389), Expect = e-151, Method: Compositional matrix adjust. Identities = 318/899 (35%), Positives = 518/899 (57%), Gaps = 57/899 (6%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD--IPMCG 85 MM+QY+E KS D ++FYR+GDFYE+FF+DAL ASR L ITLT GK+ G++ PMCG Sbjct: 1 MMKQYMETKSQYQDCILFYRLGDFYEMFFEDALTASRELEITLT--GKNCGQEERAPMCG 58 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H Y+ +L+ G+++AICEQ+E P +AK +V+R VVR+VTPGT + Q L Sbjct: 59 VPYHAVEGYLNRLVAKGYKVAICEQVEDPKQAK-----GIVKREVVRIVTPGTNLDTQAL 113 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEK-E 203 T +NY+M + I + ++ DISTG F + RL+ +I + P EII +E Sbjct: 114 DETKNNYIMCIVYIADRYGVSIADISTGDYFVTELPDGSRLMDEIYKFSPSEIICNEAFY 173 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAA 262 +S + ++ E LG + + +FD ++ ++ +++ +++ G +A A Sbjct: 174 MSGMDLDTMKEKLGITIYSLDSWYFDDAMCREKLLEHFKVSSFAGLGLEDYDCGVISAGA 233 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYS 321 ++Y+ +TQ + + + + +DS+ R NLE+ TL +++ SLL +D + Sbjct: 234 LLTYLLETQKNSLSNLTHLTPYVTGKYMMLDSSTRRNLELCETLREKQKRGSLLWVLDKT 293 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G R + + PL D +IN RLD++ + I I++ L D+ R ++++ Sbjct: 294 RTAMGARTLRKFVEQPLIDKNEINRRLDAVEELKEQAISREEIREYLSPVYDLERLITKI 353 Query: 382 KIGRGEPKDIAVIRDG------IRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 G P+D+ + IR + + + L ++ E+L A+E L L + Sbjct: 354 TYGSANPRDLTAFKSSLEMLPPIRYILEEMKVPLLQEIYEDL-DALEDLCDL-------V 405 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + + ++ P ++G +R+G + +D+ R + K +A L+ E+T IKNLKIK+ Sbjct: 406 TKAIREEPPIAMKEGNIIREGYNEEVDKLRRAKSDGKDWLAKLEEDEREKTGIKNLKIKY 465 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY++EVT+S KDL D + +QT++N R+ T EL +LE+ I A + Sbjct: 466 NKVFGYYLEVTNSY-----KDL-VPDYYTRKQTLANAERYITPELKELEDMILGAEDKLY 519 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E E + + I Q E + ++ +A +D+ +LA++A+ +Y RP I+ +K Sbjct: 520 ALEYELYSEVRETIAAQVERIQKTAKAVAGLDVFTSLALVAERNHYVRPKINEKGIIDIK 579 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 +GRHP+VEK + FI+ND L D ++ ++TGPNM GKST++RQ ALI + Sbjct: 580 EGRHPVVEKMIPNDM---FISNDTYL----DDKKNRISIITGPNMAGKSTYMRQTALIAL 632 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+G +VPA A+IG+ D++F+RVG++D+LASG+STFMVEM E A+IL AT++S +IL Sbjct: 633 MAQVGCFVPAQSANIGLSDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSKSLLIL 692 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 DEIGRGT+T DGLSIAWA +EY+ ++ + L ATH+HELT+L ++ +N + V Sbjct: 693 DEIGRGTSTFDGLSIAWAVVEYISDSKLLGAKTLFATHYHELTELEGKIENVNNYCIAVK 752 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE------------- 840 + + I+FL K++ G AD SYGIQV KLAG+P+ VI+RA +I++ Sbjct: 753 EKGDDIVFLRKIVKGGADKSYGIQVAKLAGVPDLVINRAKEIVEELSDEDITSRVSEIAA 812 Query: 841 KLYHHNQKDMRLYYPEIQTKE-SKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + +K Y E+ + S + K+D + E +K +++ ++P+ AL TLY ++ Sbjct: 813 REHTAKKKGRSKKYDEVDIAQMSLFDTVKDDDVLNE-LKEIDVTNLTPIDALNTLYRLQ 870 >gi|220932004|ref|YP_002508912.1| DNA mismatch repair protein MutS [Halothermothrix orenii H 168] gi|254766630|sp|B8CX98|MUTS_HALOH RecName: Full=DNA mismatch repair protein mutS gi|219993314|gb|ACL69917.1| DNA mismatch repair protein MutS [Halothermothrix orenii H 168] Length = 896 Score = 539 bits (1389), Expect = e-151, Method: Compositional matrix adjust. Identities = 339/925 (36%), Positives = 511/925 (55%), Gaps = 84/925 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY IK+ D+++F+R+GDFYE+F DDA +A+R L + LT R K G+ PM G Sbjct: 5 TPMMQQYQSIKNKYKDAILFFRLGDFYEMFNDDAKIAARELDLALTARNKGGGEKAPMAG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI KL++ G+++AICEQIE P EAK LV R VVR++TPGT+ E+++L Sbjct: 65 VPCHSAESYIAKLLEKGYKVAICEQIEDPSEAK-----GLVSREVVRIITPGTIIENEML 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH---DRLISDIMRIDPREIIFSEK 202 ++NYL + + +++DISTG F ++ + D++ ++ RI PRE+I K Sbjct: 120 KDKENNYLASAICYKDHLGFSYVDISTGEFYVTQFSQKFSDKVWDELDRIQPREVIIC-K 178 Query: 203 ELSHAEYKSLFETLGNVA--VAQPNVFFDHSISESRIADY------YNITTVDTFGSFSQ 254 EL E N A Q N +++S E A Y + ++ FG + Sbjct: 179 ELEETE---------NFADKKKQMNFVYNYSRIEKVKAAYNFLLEHFKTNSLSGFGCEDK 229 Query: 255 VEKT-AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ- 312 AA I+++K TQ I ++ + +DSA R NLE+ T+ G++ + Sbjct: 230 PAAILAAGEIINFLKDTQKRTLEHINRITTYNLTDYMVLDSATRYNLELTSTIRGNKHKG 289 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 SLL +D +IT GGRL + I PL D KI TRLD++ + N +L+ I++ LK Sbjct: 290 SLLNVLDQTITSMGGRLIKKWINQPLIDRNKIETRLDAVEELVNNYLLLQEIREHLKGIY 349 Query: 373 DVPRSLSRLKIGRGEPKDIAVIR------DGIRSGINILNLFLKNDLPEELRGAVEKLKK 426 D+ R L ++ G +D+A ++ I+ + LN L ++ E ++ Sbjct: 350 DLERILGKVSYGSANARDLAALKYSILKLPQIKKDLEQLNTKLFKNMHETFDPLID---- 405 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 L L + D+ P R+GG ++DG + LDE R R + K IA+LQ E T Sbjct: 406 ----LAGLLDRSIVDEPPVSVREGGLIKDGYSSELDELRKARTEGKDWIANLQKTERERT 461 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 I +LK+ N GY+IE+T ++ + D + +QT+SN RF T EL + E Sbjct: 462 GISSLKVGFNKVFGYYIEITKANLDRVP------DNYTRKQTLSNSERFITPELKEKEAL 515 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 + A +E + F + + + + + + + +I+ +D+ +LA A E++Y RP I Sbjct: 516 VLGAEEKINDLEYKLFVKIRDIVRDNIKRIKKTAAIISKLDVLTSLAQNALERDYNRPRI 575 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 +N + GRHP+VE K F+ ND L D + ++TGPNM GKST+ Sbjct: 576 NNDGVIEIIKGRHPVVEDMGKG----AFVPNDTYL----DLEEERFIIITGPNMSGKSTY 627 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ ALIV+MAQMGS+VPA A IGIVD++F+RVG++D+L +G+STFMVEM E A+I+N Sbjct: 628 MRQVALIVLMAQMGSFVPADKATIGIVDRIFTRVGASDDLTTGQSTFMVEMNEVANIVNN 687 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKR 784 AT S +ILDE+GRGT+T DGLSIAWA EY++ +R R L ATH+HELT L ++ Sbjct: 688 ATRNSLIILDEVGRGTSTYDGLSIAWAVSEYINNPDRIGARTLFATHYHELTQL-ENRPG 746 Query: 785 FHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK--- 841 N + V + +G+ FLHK+IPG A SYGI+V +LAGLP +I RA +IL EK Sbjct: 747 IKNYNVLVEEDEDGVHFLHKIIPGKASESYGIEVAQLAGLPMEIIIRAQEILAELEKKGK 806 Query: 842 ------------LYHHNQKDM----RLYYPEIQTKESKNN------LSKNDKLFVEKIKC 879 + H + D+ E TK + N+ L K++ +EKIK Sbjct: 807 ESTKTGKGENKNISHKTESDLINNIHESDKEYLTKRNTNDKVQQLPLFKSEYRVIEKIKN 866 Query: 880 LNLDEMSPLTALKTLYAVKAWTLEK 904 ++ M+P+ A+ L+ ++ EK Sbjct: 867 KDIVNMTPMEAINFLFEIQKELKEK 891 >gi|297569846|ref|YP_003691190.1| DNA mismatch repair protein MutS [Desulfurivibrio alkaliphilus AHT2] gi|296925761|gb|ADH86571.1| DNA mismatch repair protein MutS [Desulfurivibrio alkaliphilus AHT2] Length = 884 Score = 539 bits (1388), Expect = e-151, Method: Compositional matrix adjust. Identities = 337/905 (37%), Positives = 515/905 (56%), Gaps = 59/905 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRG-KHLGKDIPMC 84 TPM++QY+EIK+ + ++++FYRMGDFYE+FFDDA+ A+R LGITLT RG K + IPMC Sbjct: 4 TPMLQQYLEIKNQHSEAILFYRMGDFYEMFFDDAVEAARILGITLTARGNKGDEEKIPMC 63 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H+A+ Y+ +LIK G R+AICEQ+E P +AK LVRR VVR+V+PG + E+QL Sbjct: 64 GVPYHSASSYLARLIKAGKRVAICEQMEDPAQAK-----GLVRREVVRVVSPGLVLEEQL 118 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 L ++ YL A+ R + ++ +D+STG F + L+ ++ R++P EI+ + Sbjct: 119 LEDKENLYLAAITRHDKLFGLSLLDLSTGEFAAGEFGTTEELLDELNRLNPSEILLPAAD 178 Query: 204 LSHAEYKSLFETLGNVAVAQ-------------PNVFFDHSISESRIADYYNITTVDTFG 250 H G + A+ P F + +++ T++ FG Sbjct: 179 ELHEGPGDGNPGAGLLLSAELAARLPHCCLTSHPATAFQPPRGRELLLEHFQTTSLAGFG 238 Query: 251 S-FSQVEKTAAAAAISYIKKTQMVNKPTIGYPERE---DIQSTLFIDSAARSNLEILRTL 306 Q AA A ++Y+++TQ K + + E+ + + L +D A R NLE+ ++ Sbjct: 239 CEHFQAGLGAAGALLAYLQETQ---KSALSHLEKLRPIEQEHVLLLDEATRRNLELTTSI 295 Query: 307 S-GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQ 365 S G R+ SLL +D + T G R + + SPL D IN RLD++ + L + Sbjct: 296 SDGRRDGSLLAALDLTRTPMGARQLKKSLLSPLKDVEAINRRLDAVEQLLTEQELGRQLD 355 Query: 366 KILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLK 425 + L + D+ R SR +GR +D++ + G+++ L L L G + +L Sbjct: 356 EALAAIYDLERLNSRAVLGRANARDLSAL------GVSLGRLPLIRQLLASQPGLLGQLG 409 Query: 426 KLPQSL---EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 + L + L+S + DD P R+G +R G +A LDE +++ K++IA L+ + Sbjct: 410 QQIDELADLHQLLTSAIRDDAPVGLREGNLIRPGFNAELDELVAMQRDGKQLIAGLEARE 469 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T I NLK+ +N GY++EV+ + + +D FI +QT+ N RF T EL + Sbjct: 470 RERTGIANLKVGYNKVFGYYLEVSRGKLAEVPED------FIRKQTLVNAERFITPELKE 523 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E++++ A L +E F + + + ++ +A+ID+ ALA A NY Sbjct: 524 FESKVSGAEEKRLELEYRLFCQIREQVAAAGSRIMQSAGCLAMIDLLAALARGAARFNYV 583 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 RP+++ + +GRHP++E+ L F+ ND L D++S ++ ++TGPNM G Sbjct: 584 RPVVNAGEEIRIVEGRHPVIERNLPPGR---FVPNDVHL----DQDSKEVMIITGPNMAG 636 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST LRQ ALIV+MAQMG +VPA+ A IG+VD++F+RVG+ D+L G+STFMVEM ETA+ Sbjct: 637 KSTVLRQTALIVLMAQMGGFVPAAEAGIGVVDRIFTRVGAMDDLRRGQSTFMVEMNETAN 696 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSK 780 ILN AT QS VILDEIGRGT+T DGL+IAWA E L + + + ATH+HELT+L+ Sbjct: 697 ILNNATPQSLVILDEIGRGTSTFDGLAIAWAVAEALVQKGGKGVKTMFATHYHELTELAA 756 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + R HN + V + N+ I+FLHK++PG SYGIQV LAG+P TV++RA ++L E Sbjct: 757 TEPRIHNFHIAVREWNDTIVFLHKLLPGGVSRSYGIQVAALAGVPATVVARAKELLHNIE 816 Query: 841 KLYHHNQKDMRLYY-------PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKT 893 + Q R+ P K S+ L D +++ +N D ++PL ALK Sbjct: 817 QGEFTRQGQPRIAVGAQKTAAPGETGKPSQLRLFAEDDPLRRRLEEINPDNLAPLEALKL 876 Query: 894 LYAVK 898 LY +K Sbjct: 877 LYELK 881 >gi|289578351|ref|YP_003476978.1| DNA mismatch repair protein MutS [Thermoanaerobacter italicus Ab9] gi|289528064|gb|ADD02416.1| DNA mismatch repair protein MutS [Thermoanaerobacter italicus Ab9] Length = 866 Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust. Identities = 325/897 (36%), Positives = 519/897 (57%), Gaps = 68/897 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY++IK D+++F+R+GDFYE+F++DA +A++ L I LT R + PM G Sbjct: 4 TPMMEQYLKIKEKYKDAILFFRLGDFYEMFYEDAEIAAKELEIALTGRDAGTEERAPMAG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A+ YI KLIK G+++AICEQ+E P +AK LV+R+VVR+ TPGT+ + + Sbjct: 64 VPYHAADFYIDKLIKKGYKVAICEQLEDPAKAK-----GLVKRDVVRIYTPGTIINPESM 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSN---HDRLISDIMRIDPREIIFSE 201 +NYL++V + R + I +D++TG ++ N + ++ +I++ P EII +E Sbjct: 119 DEKTNNYLVSVFKERDNYGICAVDVTTGDLYATEIKNCKDNKKVYDEIIKYAPSEIIANE 178 Query: 202 KELSHAEYKSLFETLGNVAV--AQPNVF-----------FDHSISESRIADY-YNITTVD 247 L + +Y +F++ N AV + ++ F+ + E I D Y + ++ Sbjct: 179 DFLKNNKYIKIFKS-NNCAVNTYEKKLYYEEKSKIIKNQFNKKLEELGIKDKPYVVNSLS 237 Query: 248 T-FGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT- 305 T F ++++KTA + +NK I ED S + +DS A NLEIL + Sbjct: 238 TLFCYLNELQKTA----------LKHINKLLI----YED-NSYMGLDSNAIKNLEILESN 282 Query: 306 LSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQ 365 + S++ SLL +D ++T GGRL + + PL + I+ RL ++ + ++ Sbjct: 283 KNKSKKGSLLGVLDKTVTPMGGRLLKKWLEEPLLNKEHIDARLQAVEELFNDYKNRQDLK 342 Query: 366 KILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLK 425 ++L D+ R S++ PKD I+ +++ + + L+ L+ EK Sbjct: 343 QLLNKIYDLERLSSKIVYQSINPKDFISIKLSLQN-LPYIKEILQRFSSRLLKDIYEKFD 401 Query: 426 KLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE 485 L Q + + + + DD T ++G ++DG + ++D+ R + K IA+L+ + E+ Sbjct: 402 TL-QDIYELIDKSIKDDPSTQLKEGNIIKDGYNETVDKLRKASVEGKNWIANLEAEEREK 460 Query: 486 TKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 T IKNL+I +N GY+IEVT S+ + +R+I +QT++N R+ T EL ++E Sbjct: 461 TGIKNLRIGYNKVFGYYIEVTKSNIP------QVPERYIRKQTLANAERYVTPELKEIEE 514 Query: 546 RITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPI 605 I A + +E + F + I Q + + ++ IA ID+ I+ A +A+ Y +PI Sbjct: 515 AILGAEEKLIELEYQLFNEIREKIELQIVRIQDTAKYIATIDVLISFAEVAETNRYTKPI 574 Query: 606 IDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKST 665 +D S ++K+GRHP++E S + F+AND ++ N + ++TGPNM GKST Sbjct: 575 VDYSDRIVIKEGRHPVIETI----SDESFVANDIEIGPEN-----PIMIITGPNMAGKST 625 Query: 666 FLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILN 725 ++RQ ALIV+MAQ+GS+VPASYA IGIVDK+F+RVG++D++ +G+STFMVEM E A+IL Sbjct: 626 YMRQVALIVLMAQIGSFVPASYAKIGIVDKIFTRVGASDDIFAGQSTFMVEMSEVANILK 685 Query: 726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRF 785 AT++S +ILDE+GRGT+T DG+SIA A IEY+HE + + L ATH+HELT L +K Sbjct: 686 SATSKSLIILDEVGRGTSTYDGMSIAHAVIEYIHEKIKAKTLFATHYHELTKLEGKMKGV 745 Query: 786 HNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK---- 841 N + V + + IIFL K++PG AD SYGIQV KLAGLP +++ RA +ILK+ E Sbjct: 746 RNYNVSVEEREDDIIFLRKIVPGGADKSYGIQVSKLAGLPYSIVERAKEILKSLENDTVI 805 Query: 842 LYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + +L + +I S +E+I +LD M+P+ AL LY +K Sbjct: 806 KFELENATQQLAFTQIDI------FSTAKDSLIEEIANCDLDNMTPIQALNYLYKLK 856 >gi|226324941|ref|ZP_03800459.1| hypothetical protein COPCOM_02733 [Coprococcus comes ATCC 27758] gi|225206289|gb|EEG88643.1| hypothetical protein COPCOM_02733 [Coprococcus comes ATCC 27758] Length = 883 Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust. Identities = 313/895 (34%), Positives = 518/895 (57%), Gaps = 46/895 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY++ K D ++FYR+GDFYE+FFDDAL AS+ L ITLT + L + PMCG Sbjct: 6 TPMMKQYMQTKEEYKDCILFYRLGDFYEMFFDDALTASKELEITLTGKNCGLEERAPMCG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H + Y+ +L+ G+++AICEQ+E P AK +V+R V+R+VTPGT + Q L Sbjct: 66 IPYHAVDSYLNRLVSKGYKVAICEQVEDPKTAK-----GIVKREVIRVVTPGTNLDTQGL 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEK-E 203 T +NY+M + + + ++ D++TG + ++ + +L+ ++ + P EI+ +E Sbjct: 121 DETKNNYIMCIVYMADRYGLSVADVTTGEYLVTELDSQTKLMDELYKFMPSEIVCNEAFY 180 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAA 262 +S + L L + +FD ++ + +++ + +++ G S + A+ A Sbjct: 181 MSGLDLDDLKNRLHMAIYSLEAWYFDDALCRETLQEHFKVASLEGIGLSDYECGMIASGA 240 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYS 321 + Y+++TQ + + R + + +DSA R NLE++ TL +++ SLL +D + Sbjct: 241 LLKYLEETQKNSLSHMSRLTRYATGNYMVLDSATRRNLELVETLREKQKRGSLLWVLDKT 300 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G R + + PL D I RLD++ N I I++ L D+ R + ++ Sbjct: 301 KTAMGARTLRKYVEQPLIDKESIVKRLDAVAELKDNAICREEIREYLNPVYDLERLVGKI 360 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 P+D+ + + S + + LK+ + L+ E+L L + L + + + Sbjct: 361 TYQSANPRDLIAFQSSL-SMLPSVKCILKDMESDLLKEIYEELDPL-EELCDLVGRAIQE 418 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + P ++GG ++DG + +D R + + K +A L+ K E+T IKNL+I++N GY Sbjct: 419 EPPLAMKEGGIIKDGYNEEVDRLRKAKSEGKNWLADLETKEREKTGIKNLRIRYNKVFGY 478 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 ++EVT+S KDL D + +QT++N R+ EL +LE+ I A + +E E Sbjct: 479 YLEVTNSF-----KDL-VPDYYTRKQTLANAERYIIPELKELEDTILGAEDKLCALEYEL 532 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 + + N I + + ++ +A +D+ +LA++A+ NY RP I+ ++DGRHP+ Sbjct: 533 YCEVRNTIAAELTRIQRTAKAVAKLDVIASLALVAERNNYVRPKINEKGVIDIRDGRHPV 592 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VEK + + FIAND L D ++ ++TGPNM GKST++RQ ALIV+MAQ+GS Sbjct: 593 VEKMI---PNDMFIANDTYL----DDKKQRISIITGPNMAGKSTYMRQAALIVLMAQLGS 645 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPAS A+IG+VD++F+RVG++D+LASG+STFMVEM E A+IL AT++S +ILDEIGRG Sbjct: 646 FVPASSANIGLVDRIFTRVGASDDLASGQSTFMVEMNEVANILRNATSKSLLILDEIGRG 705 Query: 742 TATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 T+T DGLSIAWA +EY+ + + L ATH+HELT+L + +N + V + + I Sbjct: 706 TSTFDGLSIAWAVVEYISNSKLLGAKTLFATHYHELTELEGKISNVNNYCIAVKEKGDDI 765 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN----QKDMRLYYP 855 +FL K++ G AD SYGIQV KLAG+P+ VI+RA +I+ E+L + K++ + Sbjct: 766 VFLRKIVKGGADKSYGIQVAKLAGVPDPVINRAKEIV---EELVTADITGKVKNIAVQGS 822 Query: 856 EIQTKESKN------------NLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E + K K + K+D + E +K L++ M+P+ A+ LY ++ Sbjct: 823 ETKKKTQKKLDEVDLTQFSLFDTVKDDDVLNE-LKELDISHMTPMDAMNKLYQLQ 876 >gi|313903996|ref|ZP_07837376.1| DNA mismatch repair protein MutS [Eubacterium cellulosolvens 6] gi|313471145|gb|EFR66467.1| DNA mismatch repair protein MutS [Eubacterium cellulosolvens 6] Length = 878 Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust. Identities = 304/892 (34%), Positives = 512/892 (57%), Gaps = 41/892 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM+ Y+ K D +VFYR+GDFYE+FFDDA S L +TLT + L + PMCG Sbjct: 4 SPMMQDYLSTKEEYKDCVVFYRVGDFYEMFFDDAKRVSEELELTLTGKDCGLEERAPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H A+ YI KL+ +GH++AICEQ+ P + +K LV+R V+R+VTPGT+ + L Sbjct: 64 IPYHAADTYITKLVDLGHKVAICEQVGDP-----KNSKGLVKREVIRVVTPGTILSAEEL 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD-RLISDIMRIDPREIIFSEKEL 204 T +NY+M++ + + ++ DI+TG + + + RL+ +I + P EII ++ + Sbjct: 119 DETRNNYIMSIVCMADRYGVSLADITTGQCMVCEMDTESRLLDEIQKFMPAEIICNQSLM 178 Query: 205 -SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG--SFSQVEKTAAA 261 S + L A + +FD + +++++ + G F+ AA Sbjct: 179 VSGVDTDELRSRFRIAVTALEDFYFDDENCRKILKKHFHVSDMKGLGIDDFN-CGTIAAG 237 Query: 262 AAISYIKKTQMVN--KPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTI 318 A SY+ +TQ N + T P D + +DS+ R NLE++ TL +++ SLL + Sbjct: 238 ALFSYLYETQKTNMDQMTAITPYFSD--RYMLLDSSTRRNLELVETLREKQKRGSLLGVL 295 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D + T G R+ + PL + +I RL ++ ++ P++ + I++ L+ D+ R Sbjct: 296 DRTKTAMGARMLRSFVEQPLINKDEIEKRLTAVEELVKMPMIRDEIREYLQPVYDLERLA 355 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 SR+ P+D+ + + + + L E++R E L L + L + + Sbjct: 356 SRITYQSANPRDLIAFKTSLEM-LPFIRQLLSGFEGEQIREIRENLDPL-EDLYDAVQAA 413 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + DD P ++GG +RDG + +D R + ++ ++ L+ + E+T IK L++K++ Sbjct: 414 IIDDPPLAMKEGGIIRDGYNEMVDSFREAKKNGQKWLSDLEAEEREKTGIKTLRVKYSRV 473 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY IEVT+S + ++ ++ +QT++ R+TT+ L ++E +I A + +E Sbjct: 474 FGYCIEVTNSFKDKVPEE------YMRKQTLTGSERYTTVRLKEIEEQIVGAEDRLGSLE 527 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 E F + N I + + +Q IA +D+ + A +++ Y RP ++ S +K+GR Sbjct: 528 YELFSEVRNTIAQNVARVQKTAQAIAALDVFCSFAYISERNRYVRPKLNKSGKLDIKEGR 587 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ + FIAND L D+N ++ ++TGPNM GKST++RQ+ALIV+MAQ Sbjct: 588 HPVVERMI---PDDLFIANDTYL----DQNDHRVAVITGPNMAGKSTYMRQSALIVLMAQ 640 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +G +VPA+ A+IGIVD++F+RVG++D+LASG+STFMVEM E A+IL AT S +ILDEI Sbjct: 641 IGCFVPAASANIGIVDRIFTRVGASDDLASGQSTFMVEMSEVANILRNATGNSLLILDEI 700 Query: 739 GRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 GRGT+T DGL+IAWA E++ +T + + L ATH+HELT+L + HN + V + Sbjct: 701 GRGTSTFDGLAIAWAVTEFVADTKKIGAKTLFATHYHELTELEGKIAGVHNYCIAVKEKG 760 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK---------LYHHNQ 847 + I+FL K++ G AD SYGIQV +LAG+P V++RA D+++ K + + Sbjct: 761 DDIVFLRKIVQGGADKSYGIQVARLAGVPEPVLARAKDLVEQLSKADITAAVSDIASTKK 820 Query: 848 KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 K + +Y + ++ +++D +++IK L++ M+PL A+ LY +++ Sbjct: 821 KVKKTHYDTVDMQQMSLFDTRDDNRIIDEIKELDISTMTPLEAMNVLYHLQS 872 >gi|225174620|ref|ZP_03728618.1| DNA mismatch repair protein MutS [Dethiobacter alkaliphilus AHT 1] gi|225169747|gb|EEG78543.1| DNA mismatch repair protein MutS [Dethiobacter alkaliphilus AHT 1] Length = 867 Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust. Identities = 316/899 (35%), Positives = 516/899 (57%), Gaps = 64/899 (7%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 +K+ TPM+RQY EIK N D ++ +R+GDFYELFFDDA + +R L ITLT R K D+ Sbjct: 1 MKTETPMIRQYREIKEHNQDKILLFRVGDFYELFFDDAKIGARELEITLTARDK----DV 56 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 P+ G P H N Y+ +LI+ G+++AICEQ+E P +AK +V+R +V+++TPGT+TE Sbjct: 57 PLAGFPYHALNTYLSRLIERGYKVAICEQVEDPKQAK-----GIVKREIVQVITPGTVTE 111 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST---SNHDRLISD-IMRIDPREI 197 LL +NYL++V R + +A +D+STG F +S S R ++D + R++P EI Sbjct: 112 TSLLDEKSNNYLVSVYVGRGGFGLAAVDVSTGQFVMSQERGSQAARFLADELCRLNPAEI 171 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESR--IADYYNITTVDTFGSFSQV 255 I +E + LG P ++++ +++ + + + +D+ G Sbjct: 172 IVNEGAKDNQVLTEAMARLGTQVAINPCRDKNYALKQAQETLLSQFAVQNLDSLGCADLF 231 Query: 256 -EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-S 313 +AA AA++Y+ + N + PE + + + +D+A R NLE+ RT+ R+ S Sbjct: 232 FAVSAAGAALAYLHDNRQGNLSHLQQPEVYNAEGYMVLDAATRRNLELTRTIREERKYGS 291 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + + GGRL + PL D I RLD++ + ++++ + ++L D Sbjct: 292 LLWVLDKTRSALGGRLLKRWLEQPLLDKAAICERLDAVEELAGDFLMLDELSELLDEVYD 351 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R LS++ +D+ +RS + +L + E+L E+++ L Sbjct: 352 LERLLSKVHYESANARDLV----ALRSTLAVLPA-----VREKLLSGGERMQTLARHLPV 402 Query: 429 -QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 + L L+ L DD P RDGG +RD +D+ R + I S++ + E T Sbjct: 403 LEDLSLYLTEALCDDPPLSVRDGGLVRDRFHPDVDKLRHACRHGRDYILSMEQRERERTG 462 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 IK+LK+ +N GY+IE+T ++A + + D +I +QT++N R+ T EL + E + Sbjct: 463 IKSLKVGYNKVFGYYIEITRANAHL------TPDDYIRKQTLANAERYITPELKEYEATV 516 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 A +E E F+ + + + + A+ +A +D+ +LA +A++ Y RP +D Sbjct: 517 LGAEEKICALEYELFQEVRRKVGANTMEIQEAAAALAQLDVFQSLARVARDYRYVRPQVD 576 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 + +++GRHP+VE+ ++ F+ ND L D+++ +L ++TGPNM GKST++ Sbjct: 577 DGDVVDIREGRHPVVERVMQDSM---FVPNDTRL----DRDNQRLLMITGPNMAGKSTYM 629 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ ALIV++AQ+GS+VPA+ A+IG+VD++F+R+G+AD+L G+STFMVEM E A+IL++A Sbjct: 630 RQTALIVLLAQVGSFVPAASANIGLVDRIFTRIGAADDLVGGQSTFMVEMSEVANILSRA 689 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 T++S V+LDE+GRGT+T DG+SIA A +E+L+ R L ATH+HELTDL+ L N Sbjct: 690 TDKSLVLLDEVGRGTSTFDGISIARAVVEHLYGKVGARTLFATHYHELTDLASDLPAVQN 749 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYH--- 844 V + E I+FLHKVI G DHSYGIQV +LAGLP VISR+ +IL + E Sbjct: 750 MATAVKEKGEDIVFLHKVIAGSVDHSYGIQVARLAGLPQRVISRSREILNSLESPTQAVR 809 Query: 845 -----HNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + MRL+ P+ + +++++ +L +PL A++ LY ++ Sbjct: 810 ETAAASEAEQMRLFMPDPELTG-----------LMDEVQEADLMTTTPLEAMQMLYKLQ 857 >gi|298676066|ref|YP_003727816.1| DNA mismatch repair protein MutS [Methanohalobium evestigatum Z-7303] gi|298289054|gb|ADI75020.1| DNA mismatch repair protein MutS [Methanohalobium evestigatum Z-7303] Length = 887 Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust. Identities = 315/893 (35%), Positives = 508/893 (56%), Gaps = 39/893 (4%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR-GKHLGKD 80 + TP M+QY E+K D+L+F+RMGDFYE F +DA S L ITLT R G G+ Sbjct: 1 MSKQTPAMQQYYEMKKKYSDALLFFRMGDFYECFDEDAKTVSEELEITLTNRNGNKKGEK 60 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 P+ G+P H ++Y+ +LIK G+++AICEQ+E P EAK +V+R VVR+VTPGT Sbjct: 61 RPLAGIPYHAVDNYLPRLIKKGYKVAICEQLEDPREAK-----GVVKRGVVRVVTPGTAI 115 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSN----HDRLISDIMRIDPRE 196 + + + +NYLMA++ E+ ++++D+STG F + + +DR+ S+I R+ P E Sbjct: 116 DSTMFTDAANNYLMAISEKNNEFGLSFLDVSTGEFLTTQLSDEPPYDRIASEIARMRPAE 175 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QV 255 I +++E L + + + F+ + + ++ ++N++T+ G + Sbjct: 176 CILPPYLYNNSEIAQLLKDMKITLHEYDSSAFETNTARLQLLQHFNVSTLKGMGCDDLTL 235 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSL 314 +A+ A + Y +TQM + + + +DS NLE+++++ G + ++ Sbjct: 236 AISASGATLQYTLETQMRELGHVHTLKSYSDSDFMVLDSITLRNLEVIKSVRGEGNDATI 295 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 LK +D + T GGRL + + PL KIN RLD++ + ++ ++ L DV Sbjct: 296 LKVLDDTKTPMGGRLLQKWLVKPLISIDKINRRLDAVQNLKEETLVRFDLRSYLSYVKDV 355 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ--SLE 432 R + R+ G +D+ ++ + +I+ + D + L+ +L + + Sbjct: 356 ERLIGRIVYGNSNARDLVALKKSLEVVPDIIGCLKECDQSDILKEIHNELSSFTELGDIT 415 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 + + ++D+ P R+GG ++ G LDE + + SK IAS Q + E T I +LK Sbjct: 416 ELIEKGITDEPPATVREGGLIKPGYSEELDELKDMSRHSKEWIASFQKQERERTGINSLK 475 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 + +N GY+IEVT + + D +I +QTM+N RF T EL + EN I +A Sbjct: 476 VGYNKVFGYYIEVTKPNIKYVPDD------YIRKQTMANAERFYTPELKERENMIISADE 529 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 + +E F +++ + S++L + +I +D+ LA +A NY RP + + + Sbjct: 530 KIVSLEYNLFTDINSKVASHSKNLQRTATLIGKLDVLANLAEIAVNNNYVRPEVTDDCDI 589 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 +++GRHP+VE + F+ANDC+++C +++ L+TGPNM GKST++RQN+L Sbjct: 590 TIREGRHPVVENKV----DSGFVANDCEMNCTDNQ----FLLITGPNMAGKSTYMRQNSL 641 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 I IMAQ GS+VPASYA IGIVD++F+RVG+ D+LASG+STFMVEM+E A+ILN AT +S Sbjct: 642 ITIMAQAGSFVPASYASIGIVDRVFTRVGAFDDLASGQSTFMVEMVELANILNNATPKSL 701 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATL 790 V+LDEIGRGT+T DG SIA A +EY+H+ + R L ATH+H+LTDL LKR N + Sbjct: 702 VLLDEIGRGTSTFDGYSIAKAVVEYIHKKDGVGVRSLFATHYHQLTDLENKLKRVSNYHI 761 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD- 849 V + + ++FL K++PG D SYGIQV + AG+P V SRA +ILK EK +D Sbjct: 762 AVKEEGDNLVFLRKIVPGATDKSYGIQVARYAGVPKKVTSRAREILKDIEKNASIGDEDN 821 Query: 850 --------MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 +L + + + +N+ V ++K LN +E++P+ AL L Sbjct: 822 KKDKKKKYTQLVFFDPDQSQKQNDKEDERHPVVNELKDLNTNELTPIDALNKL 874 >gi|258543981|ref|ZP_05704215.1| DNA mismatch repair protein MutS [Cardiobacterium hominis ATCC 15826] gi|258520759|gb|EEV89618.1| DNA mismatch repair protein MutS [Cardiobacterium hominis ATCC 15826] Length = 862 Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust. Identities = 320/879 (36%), Positives = 478/879 (54%), Gaps = 33/879 (3%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 + TPMM+QY+ IK PD+LVFYRMGDFYELFFDDA LGI++T RG+ GK IPM Sbjct: 5 AHTPMMQQYLGIKKDYPDTLVFYRMGDFYELFFDDARRGGELLGISVTTRGQSAGKPIPM 64 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVPVH ++YI KL+K G ICEQI P AK V R V R++TPGTLT++ Sbjct: 65 AGVPVHAIDNYIAKLVKQGQTAVICEQIGDPALAK-----GPVERAVTRIITPGTLTDEA 119 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEK 202 LL N L+ + + +AW DIS+ + +S T D L S+I R+ P EI+ + Sbjct: 120 LLDEASDNILLCLTPTGEHYHLAWADISSARYHLSETLTLDALKSEIERLRPAEILIPDS 179 Query: 203 ELSHAEYKSLFETLG--NVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTA 259 + LG QP+ +FD + + + +Y T++ +G + Sbjct: 180 --------ARLPDLGANKRPRRQPDWYFDADSALNLLLQHYQTKTLNGYGIADDDPAIRP 231 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A + Y+ T P + P+RE+ +L ID+A+R NLE+ TL G ++SL+ +I+ Sbjct: 232 AGCLLQYLYDTHKQTLPPLAPPQRENRDDSLTIDAASRRNLELEYTLGGDAKRSLIGSIN 291 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T AG R I PL D T I R D++ + + + ++ L+ S D+ R + Sbjct: 292 HCQTPAGSRNLKRWINRPLRDHTAIAARHDAVAALLASNER-DALRDSLRHSADIERITT 350 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ +G P+++A +RD + +I L A + + L+ L Sbjct: 351 RIALGSARPRELAQLRDTLNRCPDIAAHLAPAAQTSALLAAHHPALLALAPVAEHLTRAL 410 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + P +DGG + G DA LD L S I+A L+ +++ + NLK+ +NN Sbjct: 411 VESPPLITKDGGIIAPGYDAELDRLNQLAHDSHSILAQLEAAEKQKSGLNNLKMGYNNIH 470 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IE+ S + + + +I RQT+ N R+ T EL LE+++ A + AL +E Sbjct: 471 GYYIEIPRSQSDL------APLHWIRRQTLKNSERYITEELKTLEDQVLGARDQALALEK 524 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 + +E L A+ + ++L ++ +A D A A LA++ +Y RP + ++ GRH Sbjct: 525 QHYEALLAALDQHRDALYRCARALAETDTLAAYAHLAEKNHYQRPSLHAEPLLHIEQGRH 584 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE+ L S+PFIAND DL+ +L ++TGPNMGGKST++RQ ALI+I+A Sbjct: 585 PVVEQHL----SEPFIANDLDLN-----KRRQLHIITGPNMGGKSTYMRQAALILILACA 635 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPA A IG + ++++R+G++D+LA GRSTFMVEM ETA+ILN A S VI+DE+G Sbjct: 636 GSYVPAKSARIGDLRRIYTRIGASDDLAGGRSTFMVEMTETANILNNADAHSLVIMDEVG 695 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGT T DGLS+AWA E L N L ATH+ ELT+L+++ K N L + ++ I Sbjct: 696 RGTGTYDGLSLAWAAAERLASQNHALTLFATHYFELTELAETHKNIKNIHLAAVEHHDNI 755 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 IF+H V G A SYG+QV +LAG+P I A L+ E H ++ T Sbjct: 756 IFMHHVEEGAASKSYGLQVARLAGVPVDTIHAATAKLRQLETRRDHGSPRLKQNELLPLT 815 Query: 860 KESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + E++ N DE++P A + +Y K Sbjct: 816 APAPAAPDPKLQALAEELALTNPDELTPRAAHELIYRWK 854 >gi|167765541|ref|ZP_02437605.1| hypothetical protein CLOSS21_00035 [Clostridium sp. SS2/1] gi|167712726|gb|EDS23305.1| hypothetical protein CLOSS21_00035 [Clostridium sp. SS2/1] Length = 875 Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust. Identities = 318/889 (35%), Positives = 515/889 (57%), Gaps = 44/889 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY++IK N D ++FYR+GDFYE+FFDDAL AS+ L ITLT + L + PMCG Sbjct: 8 TPMMQQYMQIKEENKDCILFYRLGDFYEMFFDDALTASKELEITLTGKNCGLEERAPMCG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H + Y+ KL++ G+++ ICEQ+E P +AK +V+R +VR+VTPGT Q L Sbjct: 68 VPYHAVDSYLNKLVEKGYKVGICEQVEDPSQAK-----GIVKREIVRIVTPGTNISQQSL 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISD-IMRIDPREIIFSEKEL 204 +NYLM + + I+++D++TG F+ + + + D I + +P EII ++ L Sbjct: 123 DDEKNNYLMCIFANDGSYGISFVDVTTGDFRTTAMDSLAKVRDEIFKFEPAEIICNDAFL 182 Query: 205 -SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ-VEKTAAAA 262 S ++ L + + V + FD +E RI + + ++ G + A A Sbjct: 183 ISGMDFDYLKDKMSIVISSIEPYHFDEEQAEERIKRQFKVGNLEGLGLVDHPMGVIATGA 242 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYS 321 + Y+ +TQ + + + E + + IDS++R NLE+ TL +++ SLL +D + Sbjct: 243 LLGYLHETQKSSLDHLMHIEAYETSEFMIIDSSSRRNLELCETLRDKQKKGSLLWVLDKT 302 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G R+ + PL D KI R D++ I+ +++ L D+ R ++++ Sbjct: 303 KTAMGARMLRNMVEQPLVDKKKIEERYDAVTTLTDQTIVREELREYLNPIYDLERLMTKV 362 Query: 382 KIGRGEPKDIAVIRDGIR--SGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 P+D+ + + I + K+ L LR ++ L+ + LE ++ Sbjct: 363 SYKTANPRDMIAFKTSLELLPAIKTVLEECKDPLLSGLREDLDPLEDIHNLLEDSII--- 419 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 ++ P ++GG +++G +D+ + + + K+ + L+ + E+T IKNLKIK N Sbjct: 420 -EEPPLAIKEGGIIKEGFKEDIDKLKRAKTEGKQWLMELEEREREKTGIKNLKIKFNKVF 478 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+++VT+S KDL D +I +QT++N R+TT EL L + I + + +E Sbjct: 479 GYYLDVTNSY-----KDL-VPDHYIRKQTLANSERYTTEELNQLADTILGSEDRLYALEY 532 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E++ ++ + + E + + VIA ID +LA +A+ ++ RP ++ +KDGRH Sbjct: 533 ETYVMIRETLAGEMERISRTANVIAQIDALASLAYVAERNHFVRPKLNVRGTIDIKDGRH 592 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE+ + FI+ND L D ++ ++TGPNM GKST++RQ ALIV+MAQ+ Sbjct: 593 PVVEQVIPNDM---FISNDTYL----DNKKNRVAIITGPNMAGKSTYMRQVALIVLMAQI 645 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPA+ A+IGIVD++F+RVG++D+LASG+STFMVEM E A+IL AT S +ILDEIG Sbjct: 646 GSFVPAAKANIGIVDRIFTRVGASDDLASGQSTFMVEMSEVANILRNATKNSLLILDEIG 705 Query: 740 RGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 RGT+T DGLSIAWA +EY+ + + L ATH+HELT+L + HN + V + + Sbjct: 706 RGTSTFDGLSIAWAVVEYISNSKLLGAKTLFATHYHELTELEGKIDSVHNYCIAVKEQGD 765 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN----QKDMRLY 853 I+FL K++ G AD SYG+QV KLAG+P+ VI+RA +I + E+ H+ KD+ + Sbjct: 766 DIVFLRKIVKGGADKSYGVQVAKLAGVPDAVINRAKEIARELEE---HDLTSGAKDI-MP 821 Query: 854 YPEIQT----KESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 Y E Q +ES ++ F+ +++ +L +M+PL AL LY ++ Sbjct: 822 YGEAQQLSFFRESDEPTMEHP--FMAELREKDLSDMTPLEALNYLYVLQ 868 >gi|291559008|emb|CBL37808.1| DNA mismatch repair protein MutS [butyrate-producing bacterium SSC/2] Length = 875 Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust. Identities = 320/889 (35%), Positives = 517/889 (58%), Gaps = 44/889 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY++IK N D ++FYR+GDFYE+FFDDAL AS+ L ITLT + L + PMCG Sbjct: 8 TPMMQQYMQIKEENKDCILFYRLGDFYEMFFDDALTASKELEITLTGKNCGLEERAPMCG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H + Y+ KL++ G+++ ICEQ+E P +AK +V+R +VR+VTPGT Q L Sbjct: 68 VPYHAVDSYLNKLVEKGYKVGICEQVEDPSQAK-----GIVKREIVRIVTPGTNISQQSL 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISD-IMRIDPREIIFSEKEL 204 +NYLM + + I+++D++TG F+ ++ + + D I + +P EII ++ L Sbjct: 123 DDEKNNYLMCIFANDGSYGISFVDVTTGDFRTTSMDSLAKVRDEIFKFEPAEIICNDAFL 182 Query: 205 -SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ-VEKTAAAA 262 S ++ L + + V + FD +E RI + + ++ G + A A Sbjct: 183 ISGMDFDYLKDKMSIVISSIEPYHFDEEQAEERIKRQFKVGNLEGLGLLDHPMGVIATGA 242 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYS 321 + Y+ +TQ + + + E + + IDS++R NLE+ TL +++ SLL +D + Sbjct: 243 LLGYLHETQKSSLDHLMHIEAYETSEFMIIDSSSRRNLELCETLRDKQKKGSLLWVLDKT 302 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G R+ + PL D KI R D+I I+ +++ L D+ R ++++ Sbjct: 303 KTAMGARMLRNMVEQPLVDKKKIEERYDAITTLTDQTIVREELREYLNPIYDLERLMTKV 362 Query: 382 KIGRGEPKDIAVIRDGIR--SGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 P+D+ + + I + K+ L LR ++ L+ + LE ++ Sbjct: 363 SYKTANPRDMIAFKTSLELLPAIKTVLEECKDPLLSGLREDLDPLEDIHNLLEDSII--- 419 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 ++ P ++GG +++G +D+ + + + K+ + L+ + E+T IKNLKIK N Sbjct: 420 -EEPPLAIKEGGIIKEGFKEDIDKLKRAKTEGKQWLMELEEREREKTGIKNLKIKFNKVF 478 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+++VT+S KDL D +I +QT++N R+TT EL L + I + + +E Sbjct: 479 GYYLDVTNSY-----KDL-VPDHYIRKQTLANSERYTTEELNQLADTILGSEDRLYALEY 532 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E++ ++ + + E + + VIA ID +LA +A+ ++ RP ++ +KDGRH Sbjct: 533 ETYVMIRETLAGEMERISRTANVIAQIDALASLAYVAERNHFVRPKLNVRGTIDIKDGRH 592 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE+ + FI+ND L N KN ++ ++TGPNM GKST++RQ ALIV+MAQ+ Sbjct: 593 PVVEQVIPNDM---FISNDTYLD--NKKN--RVAIITGPNMAGKSTYMRQVALIVLMAQI 645 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPA+ A+IGIVD++F+R G++D+LASG+STFMVEM E A+IL AT S +ILDEIG Sbjct: 646 GSFVPAAKANIGIVDRIFTRAGASDDLASGQSTFMVEMSEVANILRNATKNSLLILDEIG 705 Query: 740 RGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 RGT+T DGLSIAWA +EY+ + + L ATH+HELT+L + HN + V + + Sbjct: 706 RGTSTFDGLSIAWAVVEYISNSKLLGAKTLFATHYHELTELEGKIDSVHNYCIAVKEQGD 765 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN----QKDMRLY 853 I+FL K++ G AD SYG+QV KLAG+P+ VI+RA +I + E+ H+ KD+ + Sbjct: 766 DIVFLRKIVKGGADKSYGVQVAKLAGVPDAVINRAKEIARELEE---HDLTSGAKDI-MP 821 Query: 854 YPEIQT----KESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 Y E Q +ES ++ F+ +++ +L +M+PL AL LY ++ Sbjct: 822 YGEAQQLSFFRESDEPTMEHP--FMAELREKDLSDMTPLEALNYLYVLQ 868 >gi|297544629|ref|YP_003676931.1| DNA mismatch repair protein MutS [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842404|gb|ADH60920.1| DNA mismatch repair protein MutS [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 866 Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust. Identities = 324/897 (36%), Positives = 519/897 (57%), Gaps = 68/897 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY++IK D+++F+R+GDFYE+F++DA +A++ L I LT R + PM G Sbjct: 4 TPMMEQYLKIKEKYKDAILFFRLGDFYEMFYEDAEIAAKELEIALTGRDAGTEERAPMAG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A+ YI KLIK G+++AICEQ+E P +AK LV+R+VVR+ TPGT+ + + Sbjct: 64 VPYHAADFYIDKLIKKGYKVAICEQLEDPAKAK-----GLVKRDVVRIYTPGTIINPESM 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSN---HDRLISDIMRIDPREIIFSE 201 +NYL++V + R + I +D++TG ++ N + ++ +I++ P EII +E Sbjct: 119 DEKTNNYLVSVFKERDNYGICAVDVTTGDLYATEIKNCKDNKKVYDEIIKYAPSEIIANE 178 Query: 202 KELSHAEYKSLFETLGNVAV--AQPNVF-----------FDHSISESRIADY-YNITTVD 247 L + +Y +F++ N AV + ++ F+ + E I D Y + ++ Sbjct: 179 DFLKNNKYIKIFKS-NNCAVNTYEKKLYYEEKSKIIENQFNKKLEELGIKDKPYVVNSLS 237 Query: 248 T-FGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT- 305 T F ++++KTA + +NK I ED S + +DS A NLEIL + Sbjct: 238 TLFCYLNELQKTA----------LKHINKLLI----YED-NSYMGLDSNAIKNLEILESN 282 Query: 306 LSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQ 365 + S++ SLL +D ++T GGRL + + PL + I+ RL ++ + ++ Sbjct: 283 KNKSKKGSLLGVLDKTVTPMGGRLLKKWLEEPLLNKEHIDARLQAVEELFNDYKNRQDLK 342 Query: 366 KILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLK 425 ++L D+ R S++ PKD I+ +++ + + L+ L+ EK Sbjct: 343 QLLNKIYDLERLSSKIVYQSINPKDFISIKLSLQN-LPYIKEILQRFSSRLLKDIYEKFD 401 Query: 426 KLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE 485 L Q + + + + DD T ++G ++DG + ++D+ R + K IA+L+ + E+ Sbjct: 402 TL-QDIYELIDKSIKDDPSTQLKEGNIIKDGYNETVDKLRKASVEGKNWIANLEAEEREK 460 Query: 486 TKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 T IKNL+I +N GY+IEVT S+ + +++I +QT++N R+ T EL ++E Sbjct: 461 TGIKNLRIGYNKVFGYYIEVTKSNIP------QVPEKYIRKQTLANAERYVTPELKEIEE 514 Query: 546 RITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPI 605 I A + +E + F + I Q + + ++ IA ID+ I+ A +A+ Y +PI Sbjct: 515 AILGAEEKLIELEYQLFNEIREKIELQIVRIQDTAKYIATIDVLISFAEVAETNRYTKPI 574 Query: 606 IDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKST 665 +D S ++K+GRHP++E S + F+AND ++ N + ++TGPNM GKST Sbjct: 575 VDYSDRIVIKEGRHPVIETI----SDESFVANDIEIGPEN-----PIMIITGPNMAGKST 625 Query: 666 FLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILN 725 ++RQ ALIV+MAQ+GS+VPASYA IGIVDK+F+RVG++D++ +G+STFMVEM E A+IL Sbjct: 626 YMRQVALIVLMAQIGSFVPASYAKIGIVDKIFTRVGASDDIFAGQSTFMVEMSEVANILK 685 Query: 726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRF 785 AT++S +ILDE+GRGT+T DG+SIA A IEY+HE + + L ATH+HELT L +K Sbjct: 686 SATSKSLIILDEVGRGTSTYDGMSIAHAVIEYIHEKIKAKTLFATHYHELTKLEGKMKGV 745 Query: 786 HNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK---- 841 N + V + + IIFL K++PG AD SYGIQV KLAGLP +++ RA +ILK+ E Sbjct: 746 RNYNVSVEEREDDIIFLRKIVPGGADKSYGIQVSKLAGLPYSIVERAKEILKSLENDTVI 805 Query: 842 LYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + +L + +I S +E+I +LD M+P+ AL LY +K Sbjct: 806 KFELENAAQQLAFTQIDI------FSTAKDSLIEEIANCDLDNMTPIQALNYLYKLK 856 >gi|169632885|ref|YP_001706621.1| DNA mismatch repair protein MutS [Acinetobacter baumannii SDF] gi|238688262|sp|B0VUC9|MUTS_ACIBS RecName: Full=DNA mismatch repair protein mutS gi|169151677|emb|CAP00467.1| methyl-directed mismatch repair, recognize exocyclic adducts of guanosine [Acinetobacter baumannii] Length = 881 Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust. Identities = 341/901 (37%), Positives = 503/901 (55%), Gaps = 54/901 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L S TPMM+QY+++K +L+FYRMGDFYELFF+DA LA++ LGITLT RGK G Sbjct: 9 DLSSHTPMMQQYLKVKKDYQHALLFYRMGDFYELFFEDAHLAAKLLGITLTHRGKANGNP 68 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM GVP H+A Y+ +L+K G +AICEQ+ + K V R VVR++TPGTLT Sbjct: 69 IPMAGVPYHSAEGYLARLVKAGRTVAICEQV------GEVTGKGPVERKVVRILTPGTLT 122 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH--DRLISDIMRIDPREII 198 +D LL+ S+ L+A+ + + A +D+S GIFK+ ++ ++L ++ R+ P EI+ Sbjct: 123 DDALLTSYQSSNLVALCIHQNQIGFALLDLSAGIFKVQQQDYKPEQLPIELARLMPSEIL 182 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 E + + + + L +PNV F+ + ++ + D ++++T+ FG + K Sbjct: 183 IDEDLVDPNIIEQIKKHLDCPVTKRPNVDFNLNNAQKTLCDQFSVSTLSGFGLDPLPLAK 242 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFI--DSAARSNLEILRTLSGSREQSLL 315 AAAA I Y K+TQ P I E QST FI D R NLEI+ L SL Sbjct: 243 AAAAALIHYAKETQKTALPHIRSILLE--QSTDFIALDPITRRNLEIIEPLF-EHGTSLF 299 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 + ++ T GGRL + + P+ D+ ++ RLD+I IQ +P++ +LK D+ Sbjct: 300 QLVNDCQTAMGGRLLSRTLMQPVRDTALLDARLDAIEQLIQG-YHESPVRLVLKEIGDIE 358 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKL-KKLPQ----- 429 R LSR+ +G P+D+ +R FL+N L ++ KL +L Q Sbjct: 359 RVLSRVALGSARPRDLVQLRHACAQ-----IPFLRNALAPVVQAKKSKLLGQLDQELGDF 413 Query: 430 -SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 SL + L + + ++ P RDG + +G DA LDE R +RD + + + L++K E T I Sbjct: 414 KSLHQHLMAAIVENPPVLLRDGNVIAEGYDAELDELRQIRDHAGQFLIDLEIKERERTGI 473 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 LKI +N GY+IE+T + A D +I RQT+ N R+ T EL E+++ Sbjct: 474 STLKIGYNRVSGYYIELTRAQAEQAPAD------YIRRQTLKNAERYITPELKSFEDKVL 527 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 ++ + AL E FE L + E L S IA ID+ A A+ N+ RP Sbjct: 528 SSESRALAREKALFEALLENLRENIAHLQMMSSAIAQIDVIANFAHQARLNNWARPEFTP 587 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 T ++ GRHP+VE S PF ND L + ++ ++TGPNMGGKSTF+R Sbjct: 588 ETGIKIQGGRHPVVEAL----SKAPFTPNDTFLDVQH-----RMAIITGPNMGGKSTFMR 638 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q ALI ++A GSYVPA A +G +D++F+R+GSAD+L++G+STFMVEM ET+ IL+ AT Sbjct: 639 QTALISLLAYCGSYVPARAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHAT 698 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA 788 NQS V++DE+GRGT+T DGLS+AWA + L + +C L ATH+ ELT+L S N Sbjct: 699 NQSLVLMDEVGRGTSTYDGLSLAWACVVDLTKRVKCLCLFATHYFELTELG-SEPGIDNY 757 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN-- 846 + + N +I LHKV G A S+G+QV KLAG+P VI A L+ EK + Sbjct: 758 HVTAQELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQ 817 Query: 847 ---QKDMRL-----YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 Q D+ P IQ E + + ++ +K + +D ++P AL+ LY +K Sbjct: 818 TSVQSDLFATLDSEVTPSIQVIEKVIEVEVSSPA-LDLLKQIEVDNLTPRQALEQLYELK 876 Query: 899 A 899 A Sbjct: 877 A 877 >gi|313114064|ref|ZP_07799616.1| DNA mismatch repair protein MutS [Faecalibacterium cf. prausnitzii KLE1255] gi|310623473|gb|EFQ06876.1| DNA mismatch repair protein MutS [Faecalibacterium cf. prausnitzii KLE1255] Length = 871 Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust. Identities = 314/897 (35%), Positives = 511/897 (56%), Gaps = 63/897 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM+QY+EIK + D ++FYR+GDFYE+FFDDAL AS+ L +TLT + + + PMCG Sbjct: 5 SPMMQQYLEIKKQHKDEILFYRIGDFYEMFFDDALTASKELDLTLTGKQCGMEERAPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+ Y+ +LI G+++AICEQ+E P +AK LV+R+++R+VTPGT+ E +L Sbjct: 65 VPFHSYEGYVARLIAKGYKVAICEQVEDPAKAK-----GLVKRDIIRVVTPGTVIESSML 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRL----ISDIMRIDPREIIFSE 201 +NY+ ++ + + + D+STG I+ N D++ I+++ R P E++ + Sbjct: 120 QDDRNNYIASIFLKGKKAGLCFADVSTGTAHITELNADKIAPAVITELCRYHPSEVLMNP 179 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDT-FG-SFSQVEKTA 259 L E + + +V I E R A +++ FG ++Q A Sbjct: 180 GLLDCREVTAYIKKNMTCSV--------ELIEEERYAPGLVTASLENQFGRDWAQTTGIA 231 Query: 260 A--------AAAISYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTLS 307 A AA + Y+ TQ+ K I Y + + ++ + R+NLE+ TL Sbjct: 232 ADGLVRFAMAALLEYLHDTQIKGVERLKTVITYNKAQFMR----LSPVTRANLELTETLR 287 Query: 308 GSREQ-SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK 366 G ++ +LL +D + T G R+ I PL S IN RL+++ ++ + + + Sbjct: 288 GREKRGTLLWVLDKTSTSMGKRMLRSWIEQPLISSALINHRLNAVESLVKQTMARGDLTE 347 Query: 367 ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEKL 424 L D+ R ++R G PK+I + + PE EL ++ L Sbjct: 348 ELGYIADMERLMTRAVYGSATPKEIYTLAQTCDRLPGLRRQAEACGCPELAELAVQIDPL 407 Query: 425 KKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAE 484 + ++ + + + + P+ +DGG + G A +DE RS+RD +K ++A L+ + + Sbjct: 408 ----EDIKARIYAAVDPEAPSTLKDGGVIAKGYHAEVDELRSIRDNTKGVLAQLEARLRQ 463 Query: 485 ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLE 544 ET I LKI +N+ GYFIEV++S S++ + +I +QT+++ R+ T EL +LE Sbjct: 464 ETGIPKLKIGYNHVFGYFIEVSNSYKSMVP------ETYIRKQTLTSGERYITQELKELE 517 Query: 545 NRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP 604 ++I A + +E F L +I Q + + + +A +D+ ALA +A E NYCRP Sbjct: 518 SKILGAHERLITLEHRLFSELLESISAQLDRIQRTANAVAQLDVLTALAQVAAENNYCRP 577 Query: 605 IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 I+D+S + +GRHP+VE+ LK F+ ND L+C D+ ++TGPNM GKS Sbjct: 578 IVDDSDELTITEGRHPVVEQMLK---GSLFVPNDTTLNCGADR----CLIITGPNMAGKS 630 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 T++RQNALI +MAQ+GS+VPAS H+G+VD +F+R+G++D+L++G+STFMVEM E A IL Sbjct: 631 TYMRQNALIALMAQIGSFVPASSCHVGVVDAIFTRIGASDDLSAGQSTFMVEMTEVAEIL 690 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNR---CRGLLATHFHELTDLSKS 781 AT +S V+LDEIGRGT+T DG+SIA A +E++ + + C+ L ATH+HELT+L Sbjct: 691 KNATAKSLVVLDEIGRGTSTFDGMSIARAVVEHIADPAKGLGCKTLFATHYHELTELEGG 750 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 + N + V E I FL +++ G AD SYGI+V KLAGLP +V RA+++L+ E Sbjct: 751 VDGVKNYNIAVKKRGEDITFLRRIVRGPADDSYGIEVAKLAGLPGSVTRRAHEVLRALEA 810 Query: 842 LYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 N+ + ++ + +Q S S+ ++K++ L+++ ++P+ AL LY +K Sbjct: 811 TAPKNKVE-QMDFDALQEYNSPAVPSE----MMDKLEALDVETLTPIEALNFLYELK 862 >gi|212634214|ref|YP_002310739.1| DNA mismatch repair protein MutS [Shewanella piezotolerans WP3] gi|226723065|sp|B8CJQ5|MUTS_SHEPW RecName: Full=DNA mismatch repair protein mutS gi|212555698|gb|ACJ28152.1| MutS 1 protein [Shewanella piezotolerans WP3] Length = 860 Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust. Identities = 324/887 (36%), Positives = 494/887 (55%), Gaps = 45/887 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +NL+ TPMMRQY+ +K+ +PD L+FYRMGDFYELF++DA LAS LGI+LT RGK G Sbjct: 7 QNLEKHTPMMRQYLTLKAQHPDMLLFYRMGDFYELFYEDAKLASELLGISLTARGKSGGD 66 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H Y+ KL+++ +AICEQI P +K V R VVR+VTPGTL Sbjct: 67 PIPMAGLPYHAVEGYLAKLVQLRVSVAICEQIGDPATSK-----GPVERKVVRIVTPGTL 121 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREII 198 T++ LL N L A+ + ++ + A +DI++G F I+ +N + L +++ R +P E++ Sbjct: 122 TDEALLQERQDNLLAALYQGKSGYGYATLDIASGRFVITELANTEALEAELQRTNPAELL 181 Query: 199 FSEKELSHAEYKSLFETLG-NVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVE 256 +SE ++ + G N +P FD + + + + ++ FG +++ Sbjct: 182 YSE------DFSQMSLIAGMNGTRRRPEWEFDFDTCQRLLLNQFGTKDLNGFGIEGARLS 235 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 AA + Y+K TQ P I R + ++ +D+A R NLE+ L G +L Sbjct: 236 LQAAGCLMQYVKDTQRTALPHINSIVRFNQTDSIVLDAATRRNLELTVNLQGGHTNTLAS 295 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFI--QNPILINPIQKILKSSPDV 374 +D ++T G R+ + PL D I R SI I +N L+ + LK+ DV Sbjct: 296 VLDSTVTAMGSRMLQRWLHQPLRDHQVIKARQSSIAELIATENYQLL---AEDLKALGDV 352 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R +R+ + P+D A +R + + L LK L+ + + + P+ L Sbjct: 353 ERITARIALRNARPRDFARLRQAL-GLLPQLQQTLKASSEPHLQYLSQVIGEFPEEL-AL 410 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 LS + D+ P RDGG +RDG DA LDE R L + + L+ + E+T I LK+ Sbjct: 411 LSRAVVDNPPMLIRDGGVIRDGYDAELDEWRVLSAGATDYLTQLEAREKEQTGISTLKVG 470 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+IEV+ + ++ + RQT+ N R+ EL + E ++ ++ A Sbjct: 471 YNRVHGYYIEVSRRESDLVPLS------YQRRQTLKNTERYIIAELKEHEEKVLSSQGKA 524 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L +E + +E L + I+ + L + A +D+ A A+ NY P + +++ V Sbjct: 525 LALEKQLWEELFDLILPKLHELQEFATAAAELDVLCNFAECAETLNYACPELSDASGIHV 584 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 + GRHP+VE Q S PFIAN L+ + K+ ++TGPNMGGKST++RQ ALI Sbjct: 585 EAGRHPVVE----QVSQSPFIANPVTLN-----SQRKMLIVTGPNMGGKSTYMRQIALIT 635 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 +MA +G YVPA +A IG VD++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V+ Sbjct: 636 LMAHIGCYVPAEHAVIGPVDRIFTRIGASDDLASGRSTFMVEMTETANILHNATPNSLVL 695 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AW+ EYL L ATH+ ELT L + +K N L + Sbjct: 696 MDEIGRGTSTYDGLSLAWSAAEYLANNLNAMTLFATHYFELTQLPEQIKNVENVHLDAVE 755 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 + I+F+H V G A SYG+QV LAG+PN+VI A +KL+H +D L Sbjct: 756 HGDSIVFMHAVQEGPASRSYGLQVAALAGVPNSVICAAK------QKLHHLESRDHALEQ 809 Query: 855 P---EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E+ +++ + ++ +E ++ LN DE++P AL LY +K Sbjct: 810 SKNGEMAVQQTISFPTQPTSPVIEALEKLNPDELTPRQALDYLYNLK 856 >gi|307267462|ref|ZP_07548949.1| DNA mismatch repair protein MutS [Thermoanaerobacter wiegelii Rt8.B1] gi|306917519|gb|EFN47806.1| DNA mismatch repair protein MutS [Thermoanaerobacter wiegelii Rt8.B1] Length = 867 Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust. Identities = 325/894 (36%), Positives = 513/894 (57%), Gaps = 62/894 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY++IK D+++F+R+GDFYE+F++DA +A++ L I LT R + PM G Sbjct: 4 TPMMEQYLKIKEKYKDAILFFRLGDFYEMFYEDAEIAAKELEIALTGRDVGTEERAPMAG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A+ YI KLIK G+++AICEQ+E P +AK LV+R+VVR+ TPGT+ + + Sbjct: 64 VPYHAADFYIDKLIKKGYKVAICEQLEDPAKAK-----GLVKRDVVRIYTPGTIINPESM 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSN---HDRLISDIMRIDPREIIFSE 201 +NYL++V + R + I +D++TG ++ N R+ +I + P EII +E Sbjct: 119 DEKTNNYLVSVFKGRDNYGICAVDVTTGDLYATELKNCKDTKRVYDEITKYAPSEIIANE 178 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 L + +Y +F+ N A+ D+ I +N + + + A Sbjct: 179 DFLKNNKYVKIFKN-NNCAINIYEKQLDYEEKIKLIETQFNKKSEELGIKDKPYMANSLA 237 Query: 262 AAISYIKKTQM-----VNKPTIGYPEREDIQSTLFIDSAARSNLEILRT-LSGSREQSLL 315 A SY+++ Q +NK I ED S + +DS A NLEIL + + S++ SLL Sbjct: 238 ALFSYLQELQKTALKHINKLLI----YED-NSYMGLDSNAIKNLEILESNKNKSKKGSLL 292 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D ++T GGRL + + PL + I+ RL ++ + ++++L D+ Sbjct: 293 GVLDKTVTPMGGRLLKKWLEEPLLNKEHIDARLQAVEELFNDYKNRQDLKQLLNKIYDLE 352 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEE-----LRGAVEKLKKLPQS 430 R S++ PKD I+ +++ NL ++ E+ L+ EK L Q Sbjct: 353 RLASKIVYQSINPKDFISIK------LSLQNLPYIKEILEKFNSRLLKEICEKFDIL-QD 405 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 + + + + DD T ++G ++DG + ++D+ R + K IA+L+ + E+T IKN Sbjct: 406 IYELIDKSIKDDPSTQLKEGNIIKDGYNETVDKLRKASTEGKNWIANLEAEEREKTGIKN 465 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 L+I +N GY+IEVT S+ + +RFI +QT++N R+ T EL ++E I A Sbjct: 466 LRIGYNKVFGYYIEVTKSNIP------QVPERFIRKQTLANAERYVTPELKEIEETILGA 519 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 + +E + F + + Q + N ++ IAIID+ I+ A +A+ Y +PI+D S Sbjct: 520 EEKLIELEYQLFNEIREKVELQIVRIQNTAKYIAIIDVLISFAEVAETNRYIKPIVDYSD 579 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 ++ +GRHP++E S + F+AND D+ N + ++TGPNM GKST++RQ Sbjct: 580 RIVITEGRHPVIETI----SDESFVANDIDIGSEN-----PIMIITGPNMAGKSTYMRQV 630 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALIV+MAQ+GS+VPASYA IGIVDK+F+RVG++D++ +G+STFMVEM E A+IL AT++ Sbjct: 631 ALIVLMAQIGSFVPASYAKIGIVDKIFTRVGASDDIFAGQSTFMVEMSEVANILKSATSK 690 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S +ILDE+GRGT+T DG+SIA A IEY+HE + + L ATH+HELT L +K N + Sbjct: 691 SLIILDEVGRGTSTYDGMSIAHAVIEYIHEKIKAKTLFATHYHELTKLEGKMKGVRNYNV 750 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM 850 V + + IIFL K++PG AD SYGIQV KLAGLP +++ RA +IL + E N K + Sbjct: 751 SVEEREDDIIFLRKIVPGGADKSYGIQVSKLAGLPYSIVERAKEILNSLE-----NDKVI 805 Query: 851 RLYYPEIQTKESKNNLSKNDKL------FVEKIKCLNLDEMSPLTALKTLYAVK 898 + E++ + ++ D ++ I ++D M+P+ AL LY +K Sbjct: 806 K---SELENASQQLAFTQIDIFSTAKDSLIDDIANCDVDNMTPIQALNYLYELK 856 >gi|160945081|ref|ZP_02092307.1| hypothetical protein FAEPRAM212_02600 [Faecalibacterium prausnitzii M21/2] gi|158442812|gb|EDP19817.1| hypothetical protein FAEPRAM212_02600 [Faecalibacterium prausnitzii M21/2] Length = 871 Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust. Identities = 316/900 (35%), Positives = 520/900 (57%), Gaps = 69/900 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM+QY+EIK+ + D ++FYR+GDFYE+FFDDA+ ASR L +TLT + L + PMCG Sbjct: 5 SPMMQQYLEIKNQHKDEILFYRIGDFYEMFFDDAVTASRELDLTLTGKQCGLAERAPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+ Y+ +LI G+++AICEQ+E P +AK LV+R+++R+VTPGT+ E +L Sbjct: 65 VPFHSYEGYVARLIAKGYKVAICEQVEDPAKAK-----GLVKRDIIRVVTPGTVIESSML 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRL----ISDIMRIDPREIIFSE 201 +NY+ ++ + + + D+STG I+ D++ I+++ R P E++ + Sbjct: 120 QDDRNNYIASLYLKGKKAGLCFADVSTGTAHITELAADKIAPAVITELCRYHPSEVLLNP 179 Query: 202 KELSHAEYKSLFETLGNVAVA-------QPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 L E + + + +V P + ++ E D+ T + G Sbjct: 180 GLLDCREVTAYIKKNMSCSVELVEDERYAPGLVAS-ALEEQFGRDWPQTTGIAAEG---- 234 Query: 255 VEKTAAAAAISYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR 310 + + A AA + Y+ TQ+ K I Y E + ++ + R+NLE+ TL G Sbjct: 235 LVRFAMAALLEYLHDTQIKGVERLKTVITYNEAQFMR----LSPVTRANLELTETLRGRE 290 Query: 311 EQ-SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 ++ +LL +D + T G R+ I PL S IN RL+++ ++ ++ + + L Sbjct: 291 KRGTLLWVLDKTSTAMGKRMLRSWIEQPLISSPLINHRLNAVEALVRQTMVRGDLTEELH 350 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRD------GIRSGINILNLFLKNDLPE--ELRGAV 421 D+ R ++R G PK+I + G+R N PE EL ++ Sbjct: 351 YIADLERLMTRTVYGSATPKEIYTLAQTCDRLPGLRKQAEGCNC------PELAELAASI 404 Query: 422 EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLK 481 + L + ++ + + + D P+ +DGG + G A +DE RS+RD +K ++A L+ + Sbjct: 405 DPL----EDIKARIYAAVDPDAPSTLKDGGVIAKGYHAEVDELRSIRDNTKGVLAQLEAR 460 Query: 482 YAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELI 541 +ET I LKI +N+ GYFIEV++S +++ + +I +QT+++ R+ T EL Sbjct: 461 LRQETGIPKLKIGYNHVFGYFIEVSNSYKNLVP------ETYIRKQTLTSGERYITQELK 514 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 +LE++I A + +E F+ L +I Q + + + IA +D+ ALA +A E NY Sbjct: 515 ELESKILGAHERLISLERRLFDELLESIGAQLDRIQRTANAIAQLDVLAALAQVAAENNY 574 Query: 602 CRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 CRP++D+S + +GRHP+VE+ LK F+ ND L+C D+ ++TGPNM Sbjct: 575 CRPVVDDSDVLTITEGRHPVVEQVLK---GSMFVPNDTTLNCTTDR----CLIITGPNMA 627 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKST++RQNALI +MAQ+GS+VPA+ H+G+VD +F+R+G++D+LA+G+STFMVEM E A Sbjct: 628 GKSTYMRQNALIALMAQIGSFVPAASCHVGVVDAIFTRIGASDDLAAGQSTFMVEMTEVA 687 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNR---CRGLLATHFHELTDL 778 IL AT +S V+LDEIGRGT+T DG+SIA A +E++ + + C+ L ATH+HELT+L Sbjct: 688 EILKNATAKSLVVLDEIGRGTSTFDGMSIARAVVEHIADPAKGLGCKTLFATHYHELTEL 747 Query: 779 SKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKT 838 +++ N + V E I FL +++ G AD SYGI+V KLAGLP +V RA+++L+T Sbjct: 748 EGTVEGVKNYNIAVKKRGEDITFLRRIVRGPADDSYGIEVAKLAGLPGSVTRRAHEVLRT 807 Query: 839 FEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E N+ + ++ + +Q S S+ +EK++ ++++ ++P+ AL LY +K Sbjct: 808 LEASAPKNKVE-QMDFDALQEYNSPAVPSE----MMEKLEAVDVETLTPIEALNFLYELK 862 >gi|88604449|ref|YP_504627.1| DNA mismatch repair protein MutS [Methanospirillum hungatei JF-1] gi|88189911|gb|ABD42908.1| DNA mismatch repair protein MutS [Methanospirillum hungatei JF-1] Length = 892 Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust. Identities = 319/882 (36%), Positives = 504/882 (57%), Gaps = 35/882 (3%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL-GKDIPMC 84 TP M+Q+ + K PD ++F+RMGDFYE F +DA + +R L ITLT RG+ G+DIP+ Sbjct: 23 TPAMQQFYDAKQQYPDCVIFFRMGDFYETFCEDAQICARELDITLTSRGRMPDGQDIPLA 82 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H + Y+ ++I G+++AICEQ+E P +AK +V+R VVR+VTPGT+ + L Sbjct: 83 GVPYHAVDTYLSRMISKGYKVAICEQVEDPKKAK-----GIVKRAVVRVVTPGTVIDAAL 137 Query: 145 LSPTDSNYLMAVA--RIRTEWAIAWIDISTGIFKI----STSNHDRLISDIMRIDPREII 198 LS + YLMAV + + +++IDISTG F+ S D + S+ R P E I Sbjct: 138 LSTEQARYLMAVYPDQKKKRVGLSFIDISTGDFQFTEIPSQDMQDGIRSEAARYHPSECI 197 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + + +++ + +Q + F + +E + + I+ + V T Sbjct: 198 IPAG--AGEDLVRFLQSIVPLVSSQDSSLFAKASAEEVLCRQFTISNPEDLPCAGYVAGT 255 Query: 259 -AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLK 316 AA AA++Y +KTQ + I R DI S L +D+ NLE+L+ + + E +L+ Sbjct: 256 IAAGAALAYAQKTQFDSLSHIRSVHRSDIGSHLVLDAVTLRNLEVLQNIRDRTEEGTLVA 315 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 TID ++T G RL +RIA+PL D IN RLD++++FI + + ++ + PD+ R Sbjct: 316 TIDLTLTPMGRRLLRKRIAAPLLDPNVINRRLDAVSYFIDRSAVRHDVRTRIHRFPDLER 375 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKND-LPEELRGAVEKLKKLPQSLEKTL 435 R+ G P+D+ + + + LF D +P+EL GA+ ++ + L + Sbjct: 376 IAGRISYGNASPRDLVTLAAANDAVKRLKTLFSTEDGIPDELSGAIAGIRDI-TPLADLI 434 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + + D P R GG ++DG LD R++ K+ IA L+ + E T IK+LKIK+ Sbjct: 435 TRAIVQDPPALIRKGGVIQDGYHEELDHLRTISRNGKQWIADLEQQEKERTGIKSLKIKY 494 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+IE+T ++ + + D E RQT +N R+T L ++E++I A Sbjct: 495 NAVFGYYIEITKANLASVPDDYE------RRQTTANGERYTVPALREMESQIATADERLQ 548 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E E F + ++ +L +Q I ID+ LA +A + Y RP + + +++ Sbjct: 549 SLEEEIFRDIIEKASQEVPALQEIAQAIGKIDLYAGLAEVALKNQYVRPELVDEPTLLIR 608 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 + RHP+VE ++ F+ ND +LS +D+ + ++TG NM GKST++R ALI+I Sbjct: 609 ECRHPVVESSI----GGGFVPNDAELSAGSDQ----ILIITGANMAGKSTYMRSVALIII 660 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +AQMGS+VPA+YA IG+VD++F+RVG+ D+LASG+STFMVEM+E A+ILN AT +S VIL Sbjct: 661 LAQMGSFVPATYARIGVVDRIFTRVGAFDDLASGQSTFMVEMMELATILNHATEKSLVIL 720 Query: 736 DEIGRGTATLDGLSIAWATIEYLH--ETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 DEIGRGT+TLDG IA A +E+LH + R L ATHFHE+ + LKR N V Sbjct: 721 DEIGRGTSTLDGYCIAKAVLEHLHGKRSKGPRCLFATHFHEIVGIEADLKRVRNCHFAVK 780 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 ++++ +IFL K++PG D SYGI V +LAG+P +V+SR+ +++K ++ Y Sbjct: 781 ETDKDVIFLRKLVPGATDRSYGIHVAQLAGVPASVVSRSEELMKRIMSGEDPMGGGVKRY 840 Query: 854 YPEIQTKESKNNLSK-NDKLFVEKIKCLNLDEMSPLTALKTL 894 I + + E+++ L ++E++P+ AL L Sbjct: 841 TQMILLDAGTEPVREAGPDPLREELRSLQVNEITPIQALSIL 882 >gi|323691987|ref|ZP_08106235.1| DNA mismatch repair protein MutS [Clostridium symbiosum WAL-14673] gi|323503910|gb|EGB19724.1| DNA mismatch repair protein MutS [Clostridium symbiosum WAL-14673] Length = 880 Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust. Identities = 327/897 (36%), Positives = 502/897 (55%), Gaps = 61/897 (6%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY+E K PD ++FYR+GDFYE+FF+DAL ASR L ITLT + L + PMCGVP Sbjct: 1 MMTQYLETKKQYPDCILFYRLGDFYEMFFEDALTASRELEITLTGKDCGLEERAPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H Y+ KL++ G+++AI EQ+E P AK LV+R V+R+VTPGT+T Q L Sbjct: 61 YHALEGYLSKLVQKGYKVAIGEQVEDPKTAK-----GLVKREVIRVVTPGTITNSQALEE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREIIFSEK-ELS 205 + +NYLM + + I+ D+STG + ++ +R LI +I + P EII +E +S Sbjct: 116 SKNNYLMGIVYTDGIFGISVADVSTGDYLVTEVKSERNLIDEIYKFSPSEIICNEAFYMS 175 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAI 264 + L L V N FF + D++++ ++ G S + AA A + Sbjct: 176 GIDLDDLKNRLHAVISDLDNRFFSDEFCRKLLRDHFHVENLEGLGLSDYETGTIAAGAVL 235 Query: 265 SYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTLSGSREQ-SLLKTIDY 320 Y+ +TQ K ++ + R +T + +D++ R NLE++ TL +++ +LL +D Sbjct: 236 QYLYETQ---KNSLDHLTRITPYTTGQFMMLDTSTRRNLELIETLREKQKRGTLLWVLDK 292 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G R+ + PL +I R ++I N I I + L D+ R L R Sbjct: 293 TKTAMGARMLRSFVEQPLIHKEEILKRQNAIEELNMNYISREEICEYLNPIYDLERLLGR 352 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 + P+D+ R+ + +I ++ +++L E+ G ++ L + L+K + Sbjct: 353 ISYKTANPRDLISFRNSLEMLPHIKHILKEFRSELLTEIEGQLDPL----EDLKKLIDEA 408 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + DD P RDGG ++DG D R + + K +A L+ K E T IKNLKIK+N Sbjct: 409 IIDDPPVSVRDGGIIKDGFHEEADRLRHAKTEGKTWLAELEQKEKESTGIKNLKIKYNKV 468 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+ EVT+S KDL D FI +QT++N R+TT L +LE+ I A + +E Sbjct: 469 FGYYFEVTNSF-----KDL-VPDYFIRKQTLTNAERYTTDRLKELEDVIMGAEDKLFSLE 522 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 E F + + I + + + + +A+ D+ +L+++A NY +P I+ +K+GR Sbjct: 523 YELFCQVRDGIAAEVKRIQETAHAVALTDVLTSLSVVAVRNNYVKPSINEKGIIHIKNGR 582 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ + S F+AND L D ++ ++TGPNM GKST++RQ ALI +MAQ Sbjct: 583 HPVVEQMM---SGGMFVANDTYL----DNGKNRVSIITGPNMAGKSTYMRQTALITLMAQ 635 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA A IG+ D++F+RVG++D+LASG+STFMVEM E A+IL AT S +ILDEI Sbjct: 636 VGSFVPADEADIGLCDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATRSSLLILDEI 695 Query: 739 GRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 GRGT+T DGLSIAWA +EY+ T + L ATH+HELT+L ++ +N + V + Sbjct: 696 GRGTSTFDGLSIAWAVVEYISNTKLLGAKTLFATHYHELTELEGTMSGVNNYCIAVKEQG 755 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 + I+FL K++ G AD SYGIQV KLAG+P VI RA ++++ + D+ E Sbjct: 756 DDIVFLRKIVKGGADKSYGIQVAKLAGVPELVIERAKELVEEL------SDADITARAKE 809 Query: 857 IQTKE----SKNNLSKNDKL---------------FVEKIKCLNLDEMSPLTALKTL 894 I + LSK D++ ++++ L ++ MSP+ AL TL Sbjct: 810 IAENGPGIVAHKKLSKPDEVDLLQMSIFDTVSEEDIIKELMELEINRMSPIDALTTL 866 >gi|326389401|ref|ZP_08210968.1| DNA mismatch repair protein MutS [Thermoanaerobacter ethanolicus JW 200] gi|325994406|gb|EGD52831.1| DNA mismatch repair protein MutS [Thermoanaerobacter ethanolicus JW 200] Length = 867 Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust. Identities = 325/895 (36%), Positives = 513/895 (57%), Gaps = 64/895 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY++IK D+++F+R+GDFYE+F++DA +A++ L I LT R + PM G Sbjct: 4 TPMMEQYLKIKEKYKDAILFFRLGDFYEMFYEDAEIAAKELEIALTGRDAGTEERAPMAG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A+ YI KLIK G+++AICEQ+E P +AK LV+R+VVR+ TPGT+ + + Sbjct: 64 VPYHAADFYIDKLIKKGYKVAICEQLEDPAKAK-----GLVKRDVVRIYTPGTIINPESM 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHD---RLISDIMRIDPREIIFSE 201 +NYL++V + R + I +D++TG ++ N R+ +I + P EII +E Sbjct: 119 DEKTNNYLVSVFKGRDNYGICAVDVTTGDLYATELKNCKDIKRVYDEITKYAPSEIIANE 178 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 L + +Y +F+ N AV D+ I +N + + + A Sbjct: 179 DFLKNNKYIKIFKN-NNCAVNIYEKQLDYEEKIKLIETQFNKKSEELGIKDKPYMANSLA 237 Query: 262 AAISYIKKTQM-----VNKPTIGYPEREDIQSTLFIDSAARSNLEILRT-LSGSREQSLL 315 A SY+++ Q +NK I ED S + +DS A NLEIL + + S++ SLL Sbjct: 238 ALFSYLQELQKTALKHINKLLI----YED-NSYMGLDSNAIKNLEILESNRNKSKKGSLL 292 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D ++T GGRL + + PL + I+ RL+++ + +++ L D+ Sbjct: 293 GVLDKTVTPMGGRLLKKWLEEPLLNKEHIDARLEAVEELFNDYKNRQDLKQFLNKIYDLE 352 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEE-----LRGAVEKLKKLPQS 430 R S++ PKD I+ +++ NL ++ E+ L+ EK L Q Sbjct: 353 RLASKIVYQSINPKDFISIK------LSLQNLPYIKEILEKFNSRLLKEICEKFDTL-QD 405 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 + + + + DD T ++G ++DG + ++D+ R + K IA+L+ + E+T IKN Sbjct: 406 IYELIDKSIKDDPSTQLKEGNIIKDGYNETVDKLRKASTEGKNWIANLEAEEREKTGIKN 465 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 L+I +N GY+IEVT S+ + +R+I +QT++N R+ T EL ++E I A Sbjct: 466 LRIGYNKVFGYYIEVTKSNIP------QVPERYIRKQTLANAERYVTPELKEIEETILGA 519 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 + +E + F + + Q + N ++ IA ID+ I+ A +A+ Y +PI+D S Sbjct: 520 EEKLIELEYQLFNEIREKVELQIVRIQNTAKYIATIDVLISFAEVAETNRYIKPIVDYSD 579 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 ++K+GRHP++E S + F+AND D+ N + ++TGPNM GKST++RQ Sbjct: 580 RIVIKEGRHPVIETI----SDESFVANDIDIGPEN-----PIMIITGPNMAGKSTYMRQV 630 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALIV+MAQ+GS+VPASYA IGIVDK+F+RVG++D++ +G+STFMVEM E A+IL AT++ Sbjct: 631 ALIVLMAQIGSFVPASYAKIGIVDKIFTRVGASDDIFAGQSTFMVEMSEVANILKSATSK 690 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S +ILDE+GRGT+T DG+SIA A IEY+HE + + L ATH+HELT L ++ N + Sbjct: 691 SLIILDEVGRGTSTYDGMSIAHAVIEYIHEKIKAKTLFATHYHELTKLEGKMRGVRNYNV 750 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE-------KLY 843 V + + IIFL K++PG AD SYGIQV KLAGLP +++ RA +IL + E +L Sbjct: 751 SVEEREDDIIFLRKIVPGGADKSYGIQVSKLAGLPYSIVERAKEILNSLESDKVIKSELE 810 Query: 844 HHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + +Q +L + +I S ++ I ++D M+P+ AL LY +K Sbjct: 811 NASQ---QLAFTQIDI------FSTAKDSLIDDIASCDVDNMTPIQALNYLYELK 856 >gi|281356593|ref|ZP_06243084.1| DNA mismatch repair protein MutS [Victivallis vadensis ATCC BAA-548] gi|281316720|gb|EFB00743.1| DNA mismatch repair protein MutS [Victivallis vadensis ATCC BAA-548] Length = 843 Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust. Identities = 315/834 (37%), Positives = 500/834 (59%), Gaps = 39/834 (4%) Query: 18 LEENLKSSTPMMRQYIEIK-SINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKH 76 +++NL TPMMRQY E K SI PD+++ +RMGDFYE FF+DA + S L +TLTKR Sbjct: 1 MQDNL---TPMMRQYREAKDSIPPDAVLLFRMGDFYEEFFEDAEVVSSTLELTLTKR--- 54 Query: 77 LGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTP 136 + +PMCG P H + Y+ +L+ G ++A+ EQ+E P A+ +V+R V R++TP Sbjct: 55 --QGVPMCGFPHHALDTYLPRLVAAGVKVAVAEQMEDPKFAQ-----GIVKRQVTRVITP 107 Query: 137 GTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPR 195 GT+ ++ LL+P+ +N+L+++A + + A+A +DISTG F+++ S+ +L +++ R+ R Sbjct: 108 GTIMDNALLNPSCNNFLVSLAAAKEKRALACLDISTGEFRVTEISDGHKLCTELNRLGAR 167 Query: 196 EIIFSEKELSH-AEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFGSFS 253 E + S + + E ET + + N FD S +E + +++ + T+D FG + Sbjct: 168 ECVISHRLAAELRETDGFPETRNKILWTELDNDDFDFSRAEEFLKEHFKVATLDGFGCRN 227 Query: 254 -QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSRE 311 + +AA A + Y + + I E + +L +DS ++ NLE++ T+ G + Sbjct: 228 LPLAVSAAGAVLRYATENLRQDAKHILKLEVYSVDHSLELDSISQRNLELVETMFGGGKS 287 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 SLL +D+++T GGR + PL + I RLD++ +P+ + +++ + Sbjct: 288 GSLLGVLDHTVTPMGGRRLRNWVLRPLCEHDAIVARLDAVEQLKLDPLTLAELRETIGVV 347 Query: 372 PDVPRSLSRLKIGRGEPKDIA--VIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 D+ R + RL IG P+D + G+ G+ L L E+L +L+ P+ Sbjct: 348 RDLERIVGRLNIGSANPRDFQTLAVSLGVLPGVKTLLEVFDAPLLEQLNN---RLELFPE 404 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 EK +S ++D+ P DGG +R G LDE R+ K ++ +Q + E T IK Sbjct: 405 LSEK-ISQAIADEPPALLSDGGVIRPGYSQQLDELRAAATDGKGWLSQIQQREQERTGIK 463 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 +LK+K N+ GY+IEV+ ++ + + +D +I +QT+ N RF T EL +LE++I Sbjct: 464 SLKVKFNSVFGYYIEVSKANLASVPED------YIRKQTLVNAERFITPELKELESKILG 517 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 + A +E + F+ L + + + NA+ +A +D ++LA A+ +Y RP I Sbjct: 518 SEEKARALEYQLFQELREFALGFTGGIQNAANALADVDALLSLAECARLHHYNRPGIFED 577 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 I+K GRHP+++ + S+ F+ NDC L D + ++ L+TGPNM GKST++RQ Sbjct: 578 DRLIIKGGRHPVLDAAMT--GSEKFVPNDCLL----DGDRNRMMLITGPNMAGKSTYIRQ 631 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 AL+V+MAQMGS++PA A +G+VD++F+RVG+AD+LA G+STFMVEM+ETA+ILN T Sbjct: 632 TALLVVMAQMGSFIPADSAEVGLVDRIFTRVGAADDLARGQSTFMVEMVETANILNHVTP 691 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHN 787 +S VILDEIGRGT+T DGLSIAWA E+LH+ RCR ATH+HELT+L+++ + +N Sbjct: 692 KSLVILDEIGRGTSTFDGLSIAWAVAEFLHDDPGCRCRTQFATHYHELTELAQTRRGVNN 751 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 + V + + IIFL ++IPG D SYGI V KLAG+P VI RA IL+ EK Sbjct: 752 YNVAVKEYGDQIIFLRQIIPGATDRSYGIHVAKLAGIPTPVIERANVILELLEK 805 >gi|160880513|ref|YP_001559481.1| DNA mismatch repair protein MutS [Clostridium phytofermentans ISDg] gi|189030711|sp|A9KL10|MUTS_CLOPH RecName: Full=DNA mismatch repair protein mutS gi|160429179|gb|ABX42742.1| DNA mismatch repair protein MutS [Clostridium phytofermentans ISDg] Length = 932 Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust. Identities = 310/825 (37%), Positives = 496/825 (60%), Gaps = 42/825 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD--IPM 83 TPMM+QY+E K D ++FYR+GDFYE+FF+DAL+AS+ L ITLT GK+ G++ PM Sbjct: 5 TPMMQQYVETKEQYKDCILFYRLGDFYEMFFEDALVASKELEITLT--GKNCGQEERAPM 62 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CG+P H A YI KLI G+++AICEQ+E P AK +V+R V+R+VTPGT Q Sbjct: 63 CGIPYHAAEGYISKLIGKGYKVAICEQVEDPKLAK-----GIVKREVIRIVTPGTNLNTQ 117 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEK 202 L T +NYLM + I+ +DI+TG + ++ N+ +++ +I + P EI+ + Sbjct: 118 TLDETRNNYLMGIIFTDEHCGISTVDITTGDYYVTEVENNRKILDEIYKYTPSEIVCN-P 176 Query: 203 ELSHAEYKSLFETLGN---VAVAQ-PNVFFDHSISESRIADYYNITTVDTFG--SFSQVE 256 E H E L N +AV+ + ++D S + +++ + ++D G +S V Sbjct: 177 EFFHCGLD--VEDLKNRYQIAVSTFEDWYYDSEQSVKTLKEHFKVGSLDGLGLKDYS-VG 233 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLL 315 AA A + Y+ TQ + + + + IDS++R NLE+ TL +++ SLL Sbjct: 234 VNAAGAILKYLYNTQKNSLSHLTHITPYVTSRYMVIDSSSRRNLELTETLREKQKRGSLL 293 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T G R+ + PL +I+ R D+I+ N I I++ L D+ Sbjct: 294 WVLDKTKTAMGARMLRSFVEQPLITMDEISARYDAISELNDNVITREEIREYLNYIYDLE 353 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEK 433 R + ++ P+D+ + +I L ++ L +++ ++ L L +++ Sbjct: 354 RLMGKISYKSANPRDLIAFASSLSMLPHIKYLLSTCESALLKQIHEEMDALDDLQNLIDR 413 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 +++ ++ P ++GG +++G +D R + + K +A L+ K E+T IKNLK+ Sbjct: 414 SIA----EEPPIGIKEGGIIKEGFHTEVDTLRKAKTEGKVWLAELEAKEKEQTGIKNLKV 469 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 K+N GY++EVT+S A+++ ++ +I +QT+SN R+TT EL +LE++I NA + Sbjct: 470 KYNRVFGYYLEVTNSYANLVPEN------WIRKQTLSNAERYTTPELKELEDKILNAEDR 523 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 +E + F + + I E+ + + ++ +A ID +LA +A+ + RP ++ + Sbjct: 524 LFSLEYDLFAEIRDQIAEEVKRIQKTAKAVANIDAFASLAYVAERNQFIRPELNTNGTID 583 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +K+GRHP+VE+ + + F++ND L D ++ ++TGPNM GKST++RQ ALI Sbjct: 584 IKEGRHPVVEQMI---PNDMFVSNDTYL----DNAEKRISIITGPNMAGKSTYMRQTALI 636 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 V+MAQ+GS+VPASYA+IGIVD++F+RVG++D+LASG+STFMVEM E A+IL AT S + Sbjct: 637 VLMAQVGSFVPASYANIGIVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATKNSLL 696 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQ 791 ILDEIGRGT+T DGLSIAWA IE++ T+ + L ATH+HELT+L + +N + Sbjct: 697 ILDEIGRGTSTFDGLSIAWAVIEHISNTSMLGAKTLFATHYHELTELEGKISGVNNYCIA 756 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 V + E I+FL K+I G AD SYGIQV KLAG+PN+V+ RA +I+ Sbjct: 757 VKEQGEDIVFLRKIIGGGADKSYGIQVAKLAGVPNSVLVRAREIV 801 >gi|325121601|gb|ADY81124.1| DNA mismatch repair protein [Acinetobacter calcoaceticus PHEA-2] Length = 879 Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust. Identities = 339/901 (37%), Positives = 506/901 (56%), Gaps = 56/901 (6%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L S TPMM+QY+++K+ +L+FYRMGDFYELFF+DA LA++ LGITLT RGK G+ Sbjct: 9 DLSSHTPMMQQYLKVKTDYQHALLFYRMGDFYELFFEDAHLAAKLLGITLTHRGKASGRP 68 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM GVP H+A Y+ +L+K G +AICEQ+ + K V R VVR++TPGTLT Sbjct: 69 IPMAGVPYHSAEGYLARLVKAGRTVAICEQV------GEVTGKGPVERKVVRILTPGTLT 122 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH--DRLISDIMRIDPREII 198 +D LLS S+ L+++ + + A +D+S GIFK+ ++ ++L ++ R+ P EI+ Sbjct: 123 DDALLSSYQSSNLVSLCIHQNQIGFALLDLSAGIFKVQQQDYKPEQLPIELARLMPSEIL 182 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 E + + + + L +PNV F+ + ++ + D + ++T+ FG + K Sbjct: 183 IDEDLVDTNIIEQIKKHLDCPVTKRPNVDFNLNNAQKTLCDQFTVSTLSGFGLDPLPLAK 242 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFI--DSAARSNLEILRTLSGSREQSLL 315 AAAA I Y K+TQ P I + E QST FI D R NLEI+ L SL Sbjct: 243 AAAAALIHYAKETQKTALPHIRSIQLE--QSTDFIALDPITRRNLEIIEPLF-EHGTSLF 299 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 + ++ T GGRL + + P+ D+ ++ RLD+I IQ NP++ +LK D+ Sbjct: 300 QLVNDCQTAMGGRLLSRTLMQPVRDTALLDARLDAIEQLIQG-YHENPVRLVLKEIGDIE 358 Query: 376 RSLSRLKIGRGEPKDIAVIRDG------IRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 R LSR+ +G P+D+ +R +R+ + + K+ L +L + K L Q Sbjct: 359 RVLSRVALGSARPRDLVQLRHACAQIPALRTALTPVIQAKKSKLLLQLDEELGDFKALHQ 418 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 L + + ++ P RDG + +G DA LDE R +RD + + + L++K E T I Sbjct: 419 HL----MAAIVENPPVLLRDGNVIAEGYDAELDELRQIRDHAGQFLIDLEIKERERTGIN 474 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LKI +N GY+IE+T + A D +I RQT+ N R+ T EL E+++ + Sbjct: 475 TLKIGYNRVSGYYIELTRAQAEQAPAD------YIRRQTLKNAERYITPELKSFEDKVLS 528 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 + + AL E FE L + E L S IA ID+ A A+ N+ RP Sbjct: 529 SESRALSREKALFEALLENLRENIAHLQMMSSAIAQIDVIANFAHQARLNNWARPEFTPE 588 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 T ++ GRHP+VE K PF ND L + ++ ++TGPNMGGKSTF+RQ Sbjct: 589 TGIKIQAGRHPVVEALNK----APFTPNDTFLDAQH-----RMAIITGPNMGGKSTFMRQ 639 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI ++A GSYVPA +G +D++F+R+GSAD+L++G+STFMVEM ET+ IL+ ATN Sbjct: 640 TALISLLAYCGSYVPAKAVKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATN 699 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 QS V++DE+GRGT+T DGLS+AWA + L + +C L ATH+ ELT+L S N Sbjct: 700 QSLVLMDEVGRGTSTYDGLSLAWACVVDLTKRVKCLCLFATHYFELTELG-SEAGIDNYH 758 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK-LYHHNQK 848 + + N +I LHKV G A S+G+QV KLAG+P VI A L+ EK H Q Sbjct: 759 VTAQELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQT 818 Query: 849 DMR--LYYPEIQTKESKNNLSKNDKLF--------VEKIKCLNLDEMSPLTALKTLYAVK 898 + L+ P ++ + L +K+ ++ +K + +D +SP AL+ LY +K Sbjct: 819 SFQNDLFAP----PDANSGLQIIEKVVEIEVSSPALDLLKQIEVDNLSPRQALEQLYELK 874 Query: 899 A 899 A Sbjct: 875 A 875 >gi|325661608|ref|ZP_08150232.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium 4_1_37FAA] gi|325472135|gb|EGC75349.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium 4_1_37FAA] Length = 876 Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust. Identities = 319/897 (35%), Positives = 514/897 (57%), Gaps = 55/897 (6%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY+E K D ++FYR+GDFYE+FFDDA+ AS+ L ITLT + L + PMCGVP Sbjct: 1 MMQQYMETKKQYSDCILFYRLGDFYEMFFDDAITASKELEITLTGKNCGLEERAPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H+ + Y+ +L++ G+++AICEQ+E P +AK +V+R VVR+VT GT Q L Sbjct: 61 YHSVDSYLNRLVEKGYKVAICEQVEDPQQAK-----GIVKREVVRVVTAGTNMNAQALDE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREIIFSEK-ELS 205 T +NY+M + I + +A D+STG + ++ + R L+ +I + P EII +E +S Sbjct: 116 TKNNYIMCIVYIADRYGLAVADVSTGDYFVTELDSGRKLLDEIHKFSPSEIICNESFYMS 175 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAI 264 + L LG + + FFD + + ++++ +++ G AA A + Sbjct: 176 GLDLDDLRHRLGMMIYSIDTHFFDDEMCARILKEHFHAASLEGMGLGDYNCGVIAAGALL 235 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT 323 Y+ +TQ + I + + +DS++R NLE+ TL +++ SLL +D + T Sbjct: 236 KYLYETQKTSLSHITHITGYATGRYMLLDSSSRRNLELCETLREKQKRGSLLWVLDKTKT 295 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G R+ I PL D +I RL+++ I I++ L D+ R +SR+ Sbjct: 296 AMGARMLRSYIEQPLIDRHEIEQRLEAVEELKDKAISREEIREYLSPVYDLERLISRVTY 355 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEEL-RGAVEKLKKLPQSLEKTLSSMLSDD 442 P+D+ R+ + +I ++ ++ EEL + E+L L + L + L+ + ++ Sbjct: 356 QSANPRDLISFRNSLEMLPHIK--YILTEMHEELLQQICEELDTL-EDLYQLLNESIMEE 412 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P ++GG ++DG DA +D R + + K +A L+ + E+T I+NLK+K+N GY+ Sbjct: 413 PPLAMKEGGIIKDGYDADVDMLRQAKTEGKNWLAQLEEEEREKTGIRNLKVKYNKVFGYY 472 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 +EVT++ ++ D + +QT++N RF T L +LE+ I A + +E + Sbjct: 473 LEVTNAYKELVP------DYYTRKQTLANAERFITPRLKELEDTILGAEDKLYALEYTLY 526 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 + + I + + ++ +A ID+ +LA++A+ NY RP I+ +K GRHP+V Sbjct: 527 CKVRDRIASEVLRVQKTAKAVAKIDVFTSLALVAERNNYVRPKINEKGLIDIKGGRHPVV 586 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 EK FIAND L D ++ ++TGPNM GKST++RQ+ALIV+MAQ+GS+ Sbjct: 587 EK---MTPDNMFIANDTLL----DDKKNRVSIITGPNMAGKSTYMRQSALIVLMAQIGSF 639 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA A+IGI D++F+RVG++D+LASG+STFMVEM E A+IL AT+ S +ILDEIGRGT Sbjct: 640 VPADSANIGICDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSSSLLILDEIGRGT 699 Query: 743 ATLDGLSIAWATIEYLHETNR----CRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 +T DGLSIAWA +E H +N+ + L ATH+HELT+L L +N + V + + Sbjct: 700 STFDGLSIAWAVVE--HISNKKLLGAKTLFATHYHELTELEGKLDSVNNYCIAVKEQGDD 757 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI- 857 I+FL K++ G AD SYGIQV KLAG+P +VI+RA +I+ ++ D+ EI Sbjct: 758 IVFLRKIVKGGADKSYGIQVAKLAGVPESVIARAKEIVGEL------SEADITTKVREIS 811 Query: 858 -QTKESKNNLSKNDKL---------------FVEKIKCLNLDEMSPLTALKTLYAVK 898 Q E+K K D++ +E++K +++ ++P+ AL T+Y ++ Sbjct: 812 AQGSETKARQKKYDEVDLAQISLFDTVKDDDVLEELKEIDVSNLTPMDALNTIYRLQ 868 >gi|261367034|ref|ZP_05979917.1| DNA mismatch repair protein MutS [Subdoligranulum variabile DSM 15176] gi|282571152|gb|EFB76687.1| DNA mismatch repair protein MutS [Subdoligranulum variabile DSM 15176] Length = 872 Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust. Identities = 320/891 (35%), Positives = 500/891 (56%), Gaps = 43/891 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD-- 80 ++ +PMM+QY EIK +P+ ++FYR+GDFYE+F+DDAL ASR L +TLT GK+ GK+ Sbjct: 4 QAVSPMMQQYFEIKKQHPNEILFYRVGDFYEMFYDDALTASRELELTLT--GKNCGKEER 61 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 PMCGVP H+ Y+ +LI G+++AICEQ+E P AK LV+R+++R+VTPGT+ Sbjct: 62 APMCGVPFHSYETYVARLIAKGYKVAICEQMEDPALAK-----GLVKRDIIRVVTPGTVI 116 Query: 141 EDQLLSPTDSNYLMAV--ARIRTEW--AIAWIDISTGIFKISTSNHDRL----ISDIMRI 192 E +L+ +NYL ++ R R W I + DISTG + + N +++ I+++ R Sbjct: 117 ESSMLAEDKNNYLCSIYCKRRRGHWRAGICFADISTGEARATELNAEKIGGAIITELCRY 176 Query: 193 DPREIIFSEKELSHAEYKSLFETLGNVAVA-QPNVFFDHSISESRIADYYNITTVDTFG- 250 P EI+ L + + + V + + ++ ES +A + T G Sbjct: 177 MPSEILICPPMLDFKDVTGYIKQHTSALVELREEACYKDALLESTMAGQFGPEWRTTLGY 236 Query: 251 SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR 310 + A AA ++Y+++TQ I + + + R+NLE+ T+ G Sbjct: 237 DEDALVPYAVAALLNYLQETQKHGLERIKTVDNYADAQYMRLSPVTRANLELTETMRGRE 296 Query: 311 EQ-SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 ++ +LL +D + T G RL I PL D+ IN RL ++ I +++ L Sbjct: 297 KRGTLLWVLDKTETSMGKRLLRSWIEQPLVDAEAINARLSAVQALYTANIARADLKEALS 356 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKL 427 D+ R +R+ G P+++ + D + P +L ++ L L Sbjct: 357 HVFDIERLTTRILYGSATPREVKALGDTCARLPEVKTQASACGAPLLTQLADQIDPLDDL 416 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 Q + ++ L DD P +DGG +R G ++ +DE R + K +A+L+ K EET Sbjct: 417 LQKI----TTALVDDPPATLKDGGAIRAGYNSEVDELRDIMHGGKGYLANLETKLREETG 472 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 I LKI N GY+IEV+ S + D F +QT++ R+ T EL +LEN+I Sbjct: 473 IPKLKIGFNKVFGYYIEVSRSYTDSVP------DSFTRKQTLTTGERYITPELKELENKI 526 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 A L++E + F L + I Q + + +A +D+ A +A + NY P++D Sbjct: 527 LGANERLLVLEHQLFADLLSEISAQIVRIQRTALAVAQLDVLAGFAEVALQNNYVLPVVD 586 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 S +K+GRHP++E+ LK F+ ND L D+ ++ L+TGPNM GKST++ Sbjct: 587 QSGVIEIKEGRHPVIEQMLK---GTLFVPNDTLL----DEGENRMLLITGPNMAGKSTYM 639 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQNALI +MAQ+G +VPA+ AHIG+VD +F+RVG++D+LA+G+STFMVEM E A IL A Sbjct: 640 RQNALIALMAQIGCFVPAASAHIGVVDAIFTRVGASDDLAAGQSTFMVEMTEVAEILRHA 699 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 + S VILDEIGRGT+T DG+SIA A +EY+ + C+ L ATH+HELT + + + N Sbjct: 700 SKNSLVILDEIGRGTSTFDGMSIARAVVEYICDNIGCKTLFATHYHELTSMDQDIYGVKN 759 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ 847 + V E I FL +++ G AD SYGI+V KLAGLP++V RA+ +L+ E Sbjct: 760 YNIAVKKRGEDITFLRRIVAGPADDSYGIEVAKLAGLPSSVTKRAHAVLRQLEASAPGRN 819 Query: 848 KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + M+L + +T E+ NN S ++ V+K+ ++++ ++PL AL LY +K Sbjct: 820 QTMQL---DFETVEAYNNPSVPSEV-VDKLHSVDIETLTPLEALNFLYELK 866 >gi|167753644|ref|ZP_02425771.1| hypothetical protein ALIPUT_01924 [Alistipes putredinis DSM 17216] gi|167658269|gb|EDS02399.1| hypothetical protein ALIPUT_01924 [Alistipes putredinis DSM 17216] Length = 888 Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust. Identities = 320/907 (35%), Positives = 510/907 (56%), Gaps = 61/907 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M+QY +K+++PD+++ +R+GDFYE F DDA+ AS LGITLT+R + + G Sbjct: 10 TPLMKQYYAVKAVHPDAILLFRVGDFYETFGDDAIKASGILGITLTRRANGAATFVELAG 69 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KL++ G R+AICEQ+E P + K LV+R V+ LVTPG + D +L Sbjct: 70 FPYHAIDTYLPKLVRAGERVAICEQLEDPKQVK-----GLVKRGVIELVTPGVVLGDNIL 124 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH---DRLISDIMRIDPREIIFSEK 202 + ++ YL AV R +A++DISTG F + + D+LIS++ P+EII+ Sbjct: 125 ANKENTYLAAVYFGRKNTGVAFLDISTGEFYAAEGSDAYIDKLISNLA---PKEIIYQRG 181 Query: 203 ELSHAEYKSLF-ETLG--NVAVAQPNVFFDHSISESRIADYYNITTVDTFG--SFSQVEK 257 Y+ F + G + F S++ ++ + ++ FG FS Sbjct: 182 ------YEDRFSDAFGSRHYTYRLDEWVFSESVNRDKLCKQFGTQSLKGFGIEQFSS-GI 234 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLK 316 +AA A + Y++ T+ N I R D + +++D NLE+ + +GSRE+ + Sbjct: 235 SAAGAILYYLEFTEHKNTAHISSISRIDQEDYVWVDKFTIRNLELFSS-NGSREKCAFAD 293 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D ++T GGRL IA P+ + +IN RLD + F P L + + + D+ R Sbjct: 294 VVDRTLTPMGGRLLKRWIALPIKEIDRINERLDVVQRFYDEPDLAESVAEQISQVGDLER 353 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 SR+ R P++I +++ + S I +L L++ E L E++ L + E+ Sbjct: 354 IASRIAAARVTPREIVQLKNSL-SAIELLKALLESTDDERLHALAEQIDLLAEVRERIAR 412 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + D + GG + DG DA LD+ R + K + +Q + +E T I LKI +N Sbjct: 413 EVYPDPQNNQIQRGGIIADGVDAELDDLRRIALHGKDFLNRIQQRESEATGIP-LKISYN 471 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 N GY+IEV ++ KD + + +I +QT++N R+ T EL + E +I A LL Sbjct: 472 NVFGYYIEVRNT-----HKD-KVPESWIRKQTLANAERYITEELKEYEEKILGAEEKMLL 525 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 IE + L I +L + V+A ID + A +A+E+NY RP +D+ T ++ Sbjct: 526 IEQRIYAELIGFITHSLGALQRDAAVVARIDCLQSFARIARERNYVRPTLDDGTRIEIRQ 585 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP++E + + +I ND L D ++ ++TGPNM GKS LRQ ALI++M Sbjct: 586 GRHPVIETLMP--VGEEYIPNDLLL----DDKEQQIVMITGPNMSGKSALLRQTALIILM 639 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQMGS+VPA AHIG+VDK+F+RVG++DN++ G STFMVEM+E+ASILN +++S V+LD Sbjct: 640 AQMGSFVPAKAAHIGVVDKIFTRVGASDNISQGESTFMVEMLESASILNNVSDRSIVLLD 699 Query: 737 EIGRGTATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 EIGRGT+T DG+SIAWA +EYLH T R + L ATH+HEL ++ + R N + V + Sbjct: 700 EIGRGTSTYDGISIAWAMVEYLHNHPTARAKTLFATHYHELNEMEQMCPRVKNYHVSVKE 759 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ------- 847 ++ I+FL K+ G +HS+GI V ++AG+P +V++RA +ILK E +Y +N+ Sbjct: 760 VDKTIVFLRKLERGGTEHSFGIHVARMAGMPASVVARAEEILKNLELVYGNNEIVPSKSP 819 Query: 848 -KDMRLYYPEIQTKESKNNLSK---------NDKLFVE---KIKCLNLDEMSPLTALKTL 894 + R P ++ + ++ +D + V+ +IK L+++ ++P+ AL L Sbjct: 820 RRRDRKALPGVREAAEAGDQTRGMQLSMFQLDDPVLVQIRDQIKGLDINALTPIEALNKL 879 Query: 895 YAVKAWT 901 +K T Sbjct: 880 NEIKKIT 886 >gi|302039393|ref|YP_003799715.1| DNA mismatch repair protein MutS [Candidatus Nitrospira defluvii] gi|300607457|emb|CBK43790.1| DNA mismatch repair protein MutS [Candidatus Nitrospira defluvii] Length = 882 Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust. Identities = 327/905 (36%), Positives = 498/905 (55%), Gaps = 73/905 (8%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 TP+MRQY +IK D+++F+R+GDFYE+F +DA+ AS+ L I LT R K G IP+C Sbjct: 6 GTPLMRQYRDIKQAYRDAILFFRVGDFYEMFQEDAVEASKLLSIALTSRDKSSGTPIPLC 65 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H A +YI KL++ G +A+CEQ+E P AK LVRR VVRL TPGTL + + Sbjct: 66 GVPYHAATNYIAKLLRAGRTVALCEQVEDPKLAK-----GLVRREVVRLYTPGTLIDSEF 120 Query: 145 LSPTDSNYLMAVA-RIRT--------EWAIAWIDISTGIFKISTSNHDR----LISDIMR 191 L T+SN L AV+ R+R+ + +A +++STG + +S + + L ++ R Sbjct: 121 LPSTESNVLAAVSVRLRSAGTGRKDCSYGLATLEVSTGDYWLSEFHGPQAEAALRDELAR 180 Query: 192 IDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS 251 ++PRE++F E LS E + + G QP +FD + + +++ +++ FG Sbjct: 181 LEPRELLFPEN-LSPDELQWTADLTGPRCCTQPATWFDQEQGRIALQEQFHVHSLEAFGC 239 Query: 252 -FSQVEKTAAAAAISYIKKTQ------MVNKPTIGYPEREDIQSTLFIDSAARSNLEILR 304 + A AA + Y+++TQ + P + R+D + +DS NLE+++ Sbjct: 240 HILTLGIQAGAAVLRYVRETQPSAPLDHIRPPRV----RQD-DDAMHLDSVTIRNLELVK 294 Query: 305 TLSGSREQS------LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP 358 + E S LL +D ++T G RL E + PL +S I RL +++ + Sbjct: 295 PAGRAEESSNQSPYTLLGILDRTVTAMGSRLLREWLLRPLVNSAAIEVRLTAVDELKRQI 354 Query: 359 ILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEE 416 + ++ L+ D+ R SR+ +G P+D+ ++ + S I L + L + Sbjct: 355 DIRVRLRTALRIVQDISRLCSRMSLGVANPRDVLALKISVSSLPAIQAELSALDSPLIAD 414 Query: 417 LRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIA 476 LR + + Q L + + + + P RDG L+ G +DE R + K IA Sbjct: 415 LRSSWDN----AQDLYELIEGAIEQEAPVSIRDGSILKSGFHPEVDELRKASREGKGWIA 470 Query: 477 SLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFT 536 L+ K E T +++LKI++N GY+IE+T ++ + D +I +QT+ N RF Sbjct: 471 GLEAKERERTGVESLKIRYNQVFGYYIELTKANLGKVPPD------YIRKQTLVNAERFM 524 Query: 537 TLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILA 596 T EL +LE R+T A +E FE L + ++ L S+ +AI+D+ ALA A Sbjct: 525 TTELKELEERVTGADTKLTALEQALFEQLRTRLATETARLQEISRRLAILDVVAALAETA 584 Query: 597 KEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLT 656 Y RP +D + GRHP+VE+ S FI ND L D + +L +LT Sbjct: 585 ALNRYVRPTVDEGDGLHILQGRHPVVERL---DLSGGFIPNDTHL----DLATSRLHILT 637 Query: 657 GPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVE 716 GPNM GKST+LRQ ALI +MAQMGS+VPA+ A IG+ D++F+RVG++DNLA G+STFMVE Sbjct: 638 GPNMAGKSTYLRQVALITLMAQMGSFVPATEARIGLTDRIFTRVGASDNLAGGQSTFMVE 697 Query: 717 MIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHE 774 M E+A ILN AT +S ++LDEIGRGT+T DGLSIAWA EY+ + R R L ATH+HE Sbjct: 698 MTESAHILNCATPRSLILLDEIGRGTSTYDGLSIAWAIAEYIQDPQRLGARTLFATHYHE 757 Query: 775 LTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYD 834 +T L + N + V + + ++FL K+I G AD SYGI V +LAGLP+ VI RA Sbjct: 758 MTQLESLREGITNYCVAVQERDGRVLFLRKIIRGGADRSYGIHVAQLAGLPDQVIHRAKA 817 Query: 835 ILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKL-----FVEKIKCLNLDEMSPLT 889 +L E + ++++ +L + L +E+++ ++L M+PL Sbjct: 818 VLAQLESSSSSGRP----------VQDNQQSLHFDATLPPPHPMLEEVRQMDLFSMTPLD 867 Query: 890 ALKTL 894 AL L Sbjct: 868 ALNRL 872 >gi|295696238|ref|YP_003589476.1| DNA mismatch repair protein MutS [Bacillus tusciae DSM 2912] gi|295411840|gb|ADG06332.1| DNA mismatch repair protein MutS [Bacillus tusciae DSM 2912] Length = 879 Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust. Identities = 325/914 (35%), Positives = 512/914 (56%), Gaps = 90/914 (9%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S TPMM+QY+++K PD+L+ +R+GDFYELFF+DA +A+R L ITLT R G+ +PM Sbjct: 2 SYTPMMQQYLDVKGRCPDALLMFRLGDFYELFFEDAEIAARELEITLTGRDAGGGRRVPM 61 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVP H + YI L++ G+++AIC+Q+E P AK LVRR + R+VTPGTL ED+ Sbjct: 62 CGVPYHAVDGYIAALVERGYKVAICDQMEDPALAK-----GLVRREITRIVTPGTLLEDR 116 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH--DRLISDIMRIDPREIIFSE 201 + + AV I W++A+ D+STG + + + H ++++ D +R P E + E Sbjct: 117 GKEEKEQRLIGAVIPIPEGWSVAFADLSTG-DRWAGAAHSIEQVMDDGLRYRPAEWLIPE 175 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE---KT 258 E G + V Q + + +I R T ++ G E + Sbjct: 176 ------------EAAGELWVTQLSKSTE-AILTHRGRGKKTFTRMENGGWDDLPEAGGEE 222 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLF--IDSAARSNLEILRTL-SGSREQSLL 315 A AA SYI++TQ + + + + + + +D+ AR NLE+++T+ G R SLL Sbjct: 223 ALAAIASYIEETQ--RRQLVHWKPVQPLHDATYMAVDAFARRNLELVQTVREGRRTGSLL 280 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D ++T GGRL + + PL D I R D I + I N +++ L+ D+ Sbjct: 281 WLLDETVTAMGGRLLRQWLEKPLIDPVAIARRQDGIEELVGEWIRRNQLREDLRRVYDLE 340 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGA-------VEKLKKLP 428 R L R+ G P+D+ + +L L L GA +E+ Sbjct: 341 RLLGRVSYGSAGPRDLRAVAQ---------SLSQAPKLAAGLAGAGSSILADIERRLDPC 391 Query: 429 QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 + + L L+DD P ++ G +RDG LDE R + + IA+L+ + E T I Sbjct: 392 EEVRDLLDRALADDPPATAKEPGVIRDGFSPELDELRRASREGRSWIAALEQQERERTGI 451 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 K+LKI +N GY+IEVT ++ +++ ++ E RQT++ R+ T EL ++E+RI Sbjct: 452 KSLKIGYNRVFGYYIEVTKANLALVPREYE------RRQTLAASERYVTPELKEMESRIL 505 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 +A A IE + F L + +++ L + +A +D+ ALA +A ++ Y RP++D+ Sbjct: 506 DAQERAEAIEYQLFVELRSTVVKALPRLQRLAGAMAELDVLCALAEVAAKRRYTRPVVDD 565 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 S+ ++ GRHP+VE L + F+ ND L D + ++ L+TGPNM GKST++R Sbjct: 566 SSVIEIRGGRHPVVEAVLPDGT---FVPNDTFL----DGDHRRVALITGPNMAGKSTYMR 618 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q ALIV++AQ+GS+VPA +A IGIVD+LF+R+G+AD+L +G+STFMVEM+E A+IL AT Sbjct: 619 QVALIVLLAQVGSFVPADFARIGIVDRLFTRIGAADDLVAGQSTFMVEMVELATILRNAT 678 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFH 786 +S +ILDEIGRGT+T DG+SIA A +EY+H+ R R L ATH+HELT L+ L H Sbjct: 679 PRSLIILDEIGRGTSTYDGMSIARAAVEYIHDPTRVGARTLFATHYHELTGLADELPGVH 738 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYH-- 844 N + +V + + GI+FLH+++ AD SYGI V +LAGLP ++ RA IL + E++ Sbjct: 739 NFSTEVREDSGGIVFLHRLVDRPADRSYGIHVARLAGLPEDLLERAEAILTSMERVQQGL 798 Query: 845 -------------HNQKDMRLYYPEIQTKESKNNLSKNDK----------LFVEKIKCLN 881 +D+ P++ +E+ + +D +E+++ Sbjct: 799 SQTAAACVGGEGGGADRDL----PKV-PQETGGRFTADDAEQGLDEAPLHPVLERLRNAR 853 Query: 882 LDEMSPLTALKTLY 895 + +M+P+ AL+ LY Sbjct: 854 VLDMTPIQALQELY 867 >gi|293608587|ref|ZP_06690890.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292829160|gb|EFF87522.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 879 Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust. Identities = 338/899 (37%), Positives = 502/899 (55%), Gaps = 52/899 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L S TPMM+QY+++K+ +L+FYRMGDFYELFF+DA LA++ LGITLT RGK G+ Sbjct: 9 DLSSHTPMMQQYLKVKTDYQHALLFYRMGDFYELFFEDAHLAAKLLGITLTHRGKASGRP 68 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM GVP H+A Y+ +L+K G +AICEQ+ + K V R VVR++TPGTLT Sbjct: 69 IPMAGVPYHSAEGYLARLVKAGRTVAICEQV------GEVTGKGPVERKVVRILTPGTLT 122 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH--DRLISDIMRIDPREII 198 +D LLS S+ L+++ + + A +D+S GIFK+ ++ ++L ++ R+ P EI+ Sbjct: 123 DDALLSSYQSSNLVSLCIHQNQIGFALLDLSAGIFKVQQQDYKPEQLPIELARLMPSEIL 182 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 E + + + + L +PNV F+ + ++ + D + ++T+ FG + K Sbjct: 183 IDEDLVDTNIIEQIKKHLDCPVTKRPNVDFNLNNAQKTLCDQFTVSTLSGFGLDPLPLAK 242 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFI--DSAARSNLEILRTLSGSREQSLL 315 AAAA I Y K+TQ P I + E QST FI D R NLEI+ L SL Sbjct: 243 AAAAALIHYAKETQKTALPHIRSIQLE--QSTDFIALDPITRRNLEIIEPLF-EHGTSLF 299 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 + ++ T GGRL + + P+ D+ ++ RLD+I IQ NP++ +LK D+ Sbjct: 300 QLVNDCQTAMGGRLLSRTLMQPVRDTALLDARLDAIEQLIQG-YHENPVRLVLKEIGDIE 358 Query: 376 RSLSRLKIGRGEPKDIAVIRDG------IRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 R LSR+ +G P+D+ +R +R+ + + K+ L +L + K L Q Sbjct: 359 RVLSRVALGSARPRDLVQLRHACAQIPALRTALTPVIQAKKSKLLVQLDEELGDFKALHQ 418 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 L + + ++ P RDG + +G DA LDE R +RD + + + L++K E T I Sbjct: 419 HL----MAAIVENPPVLLRDGNVIAEGYDAELDELRQIRDHAGQFLIDLEIKERERTGIN 474 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LKI +N GY+IE+T + A D +I RQT+ N R+ T EL E+++ + Sbjct: 475 TLKIGYNRVSGYYIELTRAQAEQAPAD------YIRRQTLKNAERYITPELKSFEDKVLS 528 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 + + AL E FE L + E L S IA ID+ A A+ N+ RP Sbjct: 529 SESRALSREKALFEALLENLRENIAHLQMMSSAIAQIDVIANFAHQARLNNWARPEFTPE 588 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 T ++ GRHP+VE K PF ND L + ++ ++TGPNMGGKSTF+RQ Sbjct: 589 TGIKIQAGRHPVVEALNK----APFTPNDTFLDAQH-----RMAIITGPNMGGKSTFMRQ 639 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI ++A GSYVPA +G +D++F+R+GSAD+L++G+STFMVEM ET+ IL+ ATN Sbjct: 640 TALISLLAYCGSYVPAKAVKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATN 699 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 QS V++DE+GRGT+T DGLS+AWA + L + +C L ATH+ ELT+L S N Sbjct: 700 QSLVLMDEVGRGTSTYDGLSLAWACVVDLTKRVKCLCLFATHYFELTELG-SEAGIDNYH 758 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 + + N +I LHKV G A S+G+QV KLAG+P VI A L+ EK Q Sbjct: 759 VTAQELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLRILEK--QQQQHL 816 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVE---------KIKCLNLDEMSPLTALKTLYAVKA 899 + ++ N+ S+ + VE +K + +D +SP AL+ LY +KA Sbjct: 817 QTSFQNDLFAPPDANSGSQIIEKVVEIEVSSPALDLLKQIEVDNLSPRQALEQLYELKA 875 >gi|149911456|ref|ZP_01900073.1| DNA mismatch repair protein [Moritella sp. PE36] gi|149805487|gb|EDM65494.1| DNA mismatch repair protein [Moritella sp. PE36] Length = 855 Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust. Identities = 311/881 (35%), Positives = 496/881 (56%), Gaps = 39/881 (4%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 ++L + TPMM+Q+ ++K+ P+ L+FYRMGDFYELF+DDA AS+ LGI+LTKRGK G Sbjct: 9 QDLTNHTPMMQQFFKLKAEQPEILLFYRMGDFYELFYDDAKKASQLLGISLTKRGKSNGN 68 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H+ Y+ KL++ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 69 PIPMAGIPYHSLEGYLAKLVRSGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTV 123 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREII 198 +++ LL+ + N L A+ + + A +D+ +G F I+ S+ + L++++ R DP E++ Sbjct: 124 SDEALLTEHNDNLLAALFQDGNTFGYATLDMGSGRFLINQFSSEETLLAELQRTDPAELL 183 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 + E L ++ + L +P FD S + + + FG + V Sbjct: 184 YCES-LESVQHINHLRGLRR----RPEWEFDLQTGRSVLCQQFGTKDLIAFGVENAPVAL 238 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA + Y+K+TQ P I + E + + +D+A R NLE+ + LSG + +L + Sbjct: 239 CAAGCLMQYVKETQRTALPHIRSVKLEQTEQMVVMDAATRRNLELTQNLSGGFDNTLAEV 298 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D++ T G RL + P+ DS + R SI + L N +Q IL++ D+ R Sbjct: 299 LDHTSTPMGSRLLKRWLHQPIRDSLVLQQRQSSIQSLLDVGAL-NDLQPILRTIGDIERI 357 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 ++RL + P+D+ +R+ + + L ++D E ++++L LE+ L+ Sbjct: 358 IARLSLRSARPRDLVRLRNAFQQLPALHTLLAEHD--AEHLSSLQQLAGEFSELEQLLTF 415 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + D+ P RDGG + G + LDE R+L + + +L+ + ++T I LK+ +N Sbjct: 416 AVIDNPPVLIRDGGVIAPGYNQELDEWRALSKGATDYLKALEEREKQQTGIPTLKVGYNR 475 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GYFIEV S L+ D + +I RQT+ N R+ EL + E+++ ++ +L + Sbjct: 476 VHGYFIEV-----SRLQSD-QVPATYIRRQTLKNTERYIIPELKEHEDKVLSSQGKSLAL 529 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + +E L + ++ +L +++ ++ +D+ A A+ NYCRP I + +G Sbjct: 530 EKQLYEQLLDKLLPYIPALQDSAAALSELDVLCNFAERAETLNYCRPTISVKPGIDIING 589 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ + ++PFIAN L+ ++ ++TGPNMGGKST++RQ ALI +MA Sbjct: 590 RHPVVEQVM----TEPFIANPVQLNPER-----RMLIITGPNMGGKSTYMRQTALITLMA 640 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GS+VPA ++D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V++DE Sbjct: 641 HIGSFVPAEQVTTSLIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATANSLVLMDE 700 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGT+T DGLS+AWA EYL + L ATH+ ELT L++ N L + + Sbjct: 701 IGRGTSTYDGLSLAWACAEYLTNKIQAYTLFATHYFELTTLAEQHSSLVNVHLDAVEHGD 760 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 I+F+H V G AD SYG+QV LAG+P VI A L E L H P + Sbjct: 761 SIVFMHAVQDGAADRSYGLQVAALAGVPKPVIHAAKVKLHELELLSHQ---------PVV 811 Query: 858 QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 K + + ++ + LN+D M+P AL+ LY +K Sbjct: 812 TGKRPQLEATPISHPVIDDLSALNIDNMTPREALEVLYRLK 852 >gi|262164037|ref|ZP_06031776.1| DNA mismatch repair protein MutS [Vibrio mimicus VM223] gi|262027565|gb|EEY46231.1| DNA mismatch repair protein MutS [Vibrio mimicus VM223] Length = 888 Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust. Identities = 314/883 (35%), Positives = 487/883 (55%), Gaps = 37/883 (4%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E+L TPMM+QY+ +K+ NPD L+FYRMGDFYELF+DDA AS L I+LTKRG G+ Sbjct: 36 ESLSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRGASAGE 95 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 96 PIPMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTV 150 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 T++ LLS N + A+ + A +DI++G F++S + + +++ R PRE++ Sbjct: 151 TDEALLSERVDNLIAAIYHHNGRFGYATMDITSGRFQLSEPQTEEEMAAELQRTSPRELL 210 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 F E A + GN +P F+ + ++ ++ + + FG +Q+ Sbjct: 211 FPE---DFAPVHLMANRQGNRR--RPIWEFELATAKQQLNQQFGTRDLVGFGVEQAQLGL 265 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA I Y+K TQ P I + ++ +D+A R NLE+ L+G + +L Sbjct: 266 CAAGCLIQYVKDTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTYNLAGGTDNTLADV 325 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D+ T G R+ I P+ DS +N RLD+I ++ L + +LK D+ R Sbjct: 326 LDHCATPMGSRMLKRWIHQPMRDSATLNQRLDAIGE-LKEAALYAELHPVLKQIGDIERI 384 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEKLKKLPQSLEKTL 435 L+RL + P+D+A +R ++ + L + + P +LR + + L LE+ + Sbjct: 385 LARLALRSARPRDLARLRHAMQQLPELHTLLTELEQPHLAQLRTHAQPMDDLCDLLERAI 444 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 ++ P RDGG + DG A LDE R L + + + L+ + + I LK+ + Sbjct: 445 K----ENPPVVIRDGGVIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGY 500 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 NN G++I+V+ + ++ ++ RQT+ N R+ EL E+++ N+ + AL Sbjct: 501 NNVHGFYIQVSRGQSHLVPP------HYVRRQTLKNAERYIIEELKQHEDKVLNSKSRAL 554 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E + +E L + ++ E L + IA +D+ LA A+ YCRP + + Sbjct: 555 AVEKQLWEELFDLLLPHLEQLQQLAASIAQLDVLQNLAERAESLEYCRPTLVKEAGIRIL 614 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ + ++PFIAN +L+ ++ ++TGPNMGGKST++RQ ALI + Sbjct: 615 GGRHPVVEQVM----NEPFIANPIELN-----PQRRMLIITGPNMGGKSTYMRQTALIAL 665 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MA +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT+ S V++ Sbjct: 666 MAHIGSYVPAESAQIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATSHSLVLM 725 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA+ E+L L ATH+ ELT+L SL N L + Sbjct: 726 DEIGRGTSTYDGLSLAWASAEWLAREIGALTLFATHYFELTELPNSLPHLANVHLDAVEH 785 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 + I F+H V G A S+G+ V LAG+P VI A L+ E L + + Sbjct: 786 GDSIAFMHAVQEGAASKSFGLAVAGLAGVPKPVIKNARAKLQQLELLSSQPAETRKPSRV 845 Query: 856 EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +I + S L + + + L+ DE++P AL LY +K Sbjct: 846 DIANQLS---LIPEPSVVEQALAELDPDELTPRQALDALYRLK 885 >gi|92112754|ref|YP_572682.1| DNA mismatch repair protein MutS [Chromohalobacter salexigens DSM 3043] gi|122420681|sp|Q1QZX5|MUTS_CHRSD RecName: Full=DNA mismatch repair protein mutS gi|91795844|gb|ABE57983.1| DNA mismatch repair protein MutS [Chromohalobacter salexigens DSM 3043] Length = 859 Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust. Identities = 327/879 (37%), Positives = 486/879 (55%), Gaps = 43/879 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY++IK +P+ L+FYRMGDFYELF+DDA A+ L ITLT+RG+ G+ IPM G Sbjct: 9 TPMMAQYLKIKREHPEVLLFYRMGDFYELFYDDAKRAASLLDITLTQRGQSAGQPIPMAG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A Y+ +L+K G +AICEQI P AK V R VVR+VTPGTL ++ LL Sbjct: 69 VPYHSAESYLARLVKSGESVAICEQIGDPATAK-----GPVERKVVRIVTPGTLHDEALL 123 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSEKEL 204 N ++AV W +AW+++S+G F + L+S+I R+DP E++ +E Sbjct: 124 DARRDNLVLAVHPQGDRWGLAWLELSSGHFSVLEVDGESDLLSEIQRLDPAELLAAE--- 180 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAA 263 S + +L E G Q + FD + + D + + + FG + TAA Sbjct: 181 SLSLPPALAERPGFRR--QSDWLFDLESATRLLCDQFGVADLRGFGCAHLTTALTAAGVL 238 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 I Y + TQ P + E + ID+A+R NLEI L G + +L +D + T Sbjct: 239 IDYARDTQRSRLPHVTGIAVETRDEAVVIDAASRRNLEIDTNLGGGFDNTLASVLDTTAT 298 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G R + PL D +I +R ++ I ++ LK+ D+ R L+R+ + Sbjct: 299 AMGSRQLKRWLNRPLRDIAQIQSRQAAVQCLIDADRHAT-LRDALKAIGDIERILARVAL 357 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRG-AVEKLKK----LPQSLEKTLSSM 438 P+D+A +RD + N L L++DL E G A++ LK P+ L +TLS Sbjct: 358 YSARPRDLARLRDAL----NALPA-LEHDLAELDEGTAIDALKHHIRPYPE-LAETLSRA 411 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 L D+ P RDGG + G DA LDE R L + + + L+ + E T + LK+ +N Sbjct: 412 LVDNPPVVIRDGGVIGTGFDAELDEYRGLAEHAGDYLVELETRERERTGLVGLKVGYNRV 471 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IE+ + A E+ +I RQT+ N RF EL + E++ +A + AL E Sbjct: 472 HGYYIEIPRAQAR------EAPAEYIRRQTLKNAERFIIPELKEFEDKALSAKSRALARE 525 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 ++ L + ++L ++ +A +D+ A A ++ RP + + ++ GR Sbjct: 526 KLLYDGLLETLNVDLQALQGTARALATLDVLACFAERALALDFVRPRLSDQPGLRIRGGR 585 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE S PF+ ND L + +L ++TGPNMGGKST++RQ ALI ++A Sbjct: 586 HPVVEHV----SDHPFVPNDLMLD-----ETRRLLVITGPNMGGKSTYMRQAALIALLAH 636 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 GS VPA A IG VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT S V++DEI Sbjct: 637 TGSCVPADEAEIGPVDRIFTRIGSSDDLAGGRSTFMVEMTETATILHNATEHSLVLMDEI 696 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGLS+AWA+ E+L E R L ATH+ E+T L++ N L ++ +G Sbjct: 697 GRGTSTFDGLSLAWASAEHLVE-RRAFTLFATHYFEMTALTEPYDSVANVHLTAAEHRDG 755 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR--LYYPE 856 I+F+H+V G A SYG+QV +LAG+P V++RA + L T E+ H Q R L + Sbjct: 756 IVFMHRVEEGPASQSYGLQVAQLAGVPPRVVARAREKLATLEQQEVH-QAGTRGGLGDSD 814 Query: 857 IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 + + + VE ++ L+LD +SP A+ LY Sbjct: 815 AAAPQQADLFASAPHPVVEALEKLDLDAISPRQAMALLY 853 >gi|229530349|ref|ZP_04419737.1| DNA mismatch repair protein MutS [Vibrio cholerae 12129(1)] gi|229332122|gb|EEN97610.1| DNA mismatch repair protein MutS [Vibrio cholerae 12129(1)] Length = 886 Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust. Identities = 314/889 (35%), Positives = 489/889 (55%), Gaps = 49/889 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E+L TPMM+QY+ +K+ NPD L+FYRMGDFYELF+DDA AS L I+LTKRG G+ Sbjct: 34 ESLSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRGASAGE 93 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 94 PIPMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTV 148 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 T++ LLS N + A+ + A +DI++G F++S + + +++ R PRE++ Sbjct: 149 TDEALLSERIDNLIAAIYHHNGRFGYATMDITSGRFQLSEPQTEEEMAAELQRTSPRELL 208 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 F E + + GN +P F+ ++ ++ + + FG +++ Sbjct: 209 FPE---DFSPVHLMASRQGNRR--RPIWEFELDTAKQQLNQQFGTRDLVGFGVEQAKLGL 263 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA I Y+K TQ P I + ++ +D+A R NLE+ LSG + +L + Sbjct: 264 CAAGCLIQYVKDTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTHNLSGGTDNTLAEV 323 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D+ T G R+ I P+ D+ +N RLD+I ++ L + +LK D+ R Sbjct: 324 LDHCATPMGSRMLKRWIHQPMRDNATLNQRLDAITE-LKETALYGELHPVLKQIGDIERL 382 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTL 435 L+RL + P+D+A +R ++ + ++ LK ELR E + +L LE+ + Sbjct: 383 LARLALRSARPRDLARLRHAMQQLPELHSVMSELKQPHLTELRTHAEPMDELCDLLERAI 442 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 ++ P RDGG + DG A LDE R L + + + L+ + + I LK+ + Sbjct: 443 K----ENPPVVIRDGGVIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGY 498 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 NN G++I+V+ + ++ ++ RQT+ N R+ EL E+++ N+ + AL Sbjct: 499 NNVHGFYIQVSRGQSHLVPP------HYVRRQTLKNAERYIIEELKQHEDKVLNSKSRAL 552 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E + +E L + ++ E L + +A +D+ LA A+ YCRP + ++ Sbjct: 553 ALEKQLWEELFDLLLPHLEQLQQLAASVAQLDVLQNLAERAENLEYCRPTLVQEAGIHIQ 612 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ + ++PFIAN +L+ ++ ++TGPNMGGKST++RQ ALI + Sbjct: 613 GGRHPVVERVM----NEPFIANPIELN-----PQRRMLIITGPNMGGKSTYMRQTALIAL 663 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MA +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V++ Sbjct: 664 MAHIGSYVPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLM 723 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA+ E+L + L ATH+ ELT+L L N L + Sbjct: 724 DEIGRGTSTYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEH 783 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 +GI F+H V G A SYG+ V LAG+P VI A L+ E L P Sbjct: 784 GDGIAFMHAVQEGAASKSYGLAVAGLAGVPKPVIKNARAKLQQLELLSSQ---------P 834 Query: 856 EIQTKESKNNLSKNDKLFVE------KIKCLNLDEMSPLTALKTLYAVK 898 K S+ +++ L E + ++ D+++P AL LY +K Sbjct: 835 AETRKPSRVDIANQLSLIPEPSAVEQALAGVDPDQLTPRQALDMLYQLK 883 >gi|307243914|ref|ZP_07526039.1| DNA mismatch repair protein MutS [Peptostreptococcus stomatis DSM 17678] gi|306492736|gb|EFM64764.1| DNA mismatch repair protein MutS [Peptostreptococcus stomatis DSM 17678] Length = 880 Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust. Identities = 318/887 (35%), Positives = 524/887 (59%), Gaps = 38/887 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM++Y+E K PD ++FYR+GDFYE+FFDDALLASR L I LT + L + PMCG Sbjct: 9 SPMMKKYLETKDEYPDCILFYRLGDFYEMFFDDALLASRILDIALTGKACGLEERAPMCG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A+ Y+ +L++ G+++AI EQ+E P AK LV+R VV++VTPGTL ED L Sbjct: 69 VPYHSASSYLTRLVEAGYKVAIGEQVEDPATAK-----GLVKREVVKIVTPGTLLEDDSL 123 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 T +NYLMA+ + +IA++DISTG S + D + +++ +I PREI+ + +L Sbjct: 124 EKTSNNYLMAIYYQGQDASIAYVDISTGELNTSLISLDGVKNEVAKILPREILSNSPDLL 183 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSI-SESRIADYYNITTVDTFG-SFSQVEKTAAAAA 263 + +L ++A N FD S+ ++ I D + +D G + + A Sbjct: 184 GS-----LASLSDMANIYLNEDFDISLLDKTVIYDRFEPAYLDKLGLDKDNLILYSLAII 238 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSI 322 ++YI KTQM+N+ + + +D R NLE+ +T+ S+++ SLL+ +D + Sbjct: 239 LNYISKTQMMNETNLNTINIYQSGDYMALDLFTRINLELTKTIRTSKKKGSLLQVLDATS 298 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G R+ + I PL I+ RL+ + + IL + ++ + S D+ R +++ Sbjct: 299 TPMGARMLKKHIEQPLIKKDMIDHRLNITHEIKDDYILRDELKTSVSSIFDLERICAKIA 358 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 R PKD+ +++ ++ I++ + N L+ + L L + + + + D+ Sbjct: 359 YDRVSPKDLVNLKNSLQVLPYIVDT-ISNSKASGLKDFIGSLDCL-KDIYILIKDSIKDE 416 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 T +DG +++ LD+ R + +I ++ + E+T K+LKI +N GY+ Sbjct: 417 PSTGIKDGNIIKEAYSHELDQLRDISQNGAFMIRDIEQREREKTGAKSLKIGYNKVFGYY 476 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IE+T AS+L+ D++ D +I +QT+ N RF T EL ++E++I NA + +E E F Sbjct: 477 IEITK--ASLLQIDID--DSYIRKQTLVNAERFITPELKEIEDKILNAEDKIKAMEYEFF 532 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 + +S + + + + + IA +D+ I+ AI+A + NY RP I+ + ++ GRHP++ Sbjct: 533 KNISRQVYQNIDRIQIVASKIAQLDLYISNAIIANKYNYVRPNINQNGVLAIEGGRHPVI 592 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 E+ + +++ FI ND D+ N N ++TGPNM GKST++RQ ALI +MA +GS+ Sbjct: 593 EQIIGEEN---FINNDTDIGYDNMIN-----IITGPNMSGKSTYMRQVALITLMAHIGSF 644 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA+YA+I IVD++F+RVG++D+LA G+STFMVEM E + IL+ A++ S +ILDEIGRGT Sbjct: 645 VPATYANIPIVDRIFTRVGASDDLAQGQSTFMVEMDEVSQILSNASSDSLIILDEIGRGT 704 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFL 802 +T DG+S+AW+ +EY+++ + L ATH+HELTDL R N ++ V + + I+FL Sbjct: 705 STYDGISLAWSIVEYIYKRIGAKTLFATHYHELTDLEDKYPRIKNYSVAVQEEGDDIVFL 764 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN--------QKDMRLYY 854 K+I G AD SYGI V KLA LP VI RA IL EK + N +K+++L + Sbjct: 765 RKIIAGAADRSYGIYVAKLAKLPGQVIERADQILVELEKNHIENSASIDQSREKNIQLSF 824 Query: 855 PEIQTKESKNNLSKNDKLFVEKI-KCLNLDEM--SPLTALKTLYAVK 898 + + + + +K++ + I + L++D M +P+ + T+Y +K Sbjct: 825 DMVVNQAQNKEIEEKNKVYKKFIGQVLDIDIMNSTPMDIMNTMYELK 871 >gi|260549540|ref|ZP_05823758.1| mismatch repair ATPase [Acinetobacter sp. RUH2624] gi|260407333|gb|EEX00808.1| mismatch repair ATPase [Acinetobacter sp. RUH2624] Length = 881 Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust. Identities = 340/901 (37%), Positives = 502/901 (55%), Gaps = 54/901 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L + TPMM+QY+++K +L+FYRMGDFYELFF+DA LA++ LGITLT RGK G Sbjct: 9 DLSNHTPMMQQYLKVKKDYQHALLFYRMGDFYELFFEDAHLAAKLLGITLTHRGKANGNP 68 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM GVP H+A Y+ +L+K G +AICEQ+ + K V R VVR++TPGTLT Sbjct: 69 IPMAGVPYHSAEGYLARLVKAGRTVAICEQV------GEVTGKGPVERKVVRILTPGTLT 122 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH--DRLISDIMRIDPREII 198 +D LL+ S+ L+A+ + + A +D+S GIFK+ ++ ++L ++ R+ P EI+ Sbjct: 123 DDALLTSYQSSNLVALCIHQNQIGFALLDLSAGIFKVQQQDYKPEQLPIELARLMPSEIL 182 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 E + + + + L +PNV F+ + ++ + D ++++T+ FG + K Sbjct: 183 IDEDLVDQNIIEQIKKHLDCPVTKRPNVDFNLNNAQKTLCDQFSVSTLSGFGLDPLPLAK 242 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFI--DSAARSNLEILRTLSGSREQSLL 315 AAAA I Y K+TQ P I E QST FI D R NLEI+ L SL Sbjct: 243 AAAAALIHYAKETQKTALPHIRSILLE--QSTDFIALDPITRRNLEIIEPLF-EHGTSLF 299 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 + ++ T GGRL + + P+ D+ ++ RLD+I IQ +P++ +LK D+ Sbjct: 300 QLVNDCQTAMGGRLLSRTLMQPVRDTALLDARLDAIEQLIQG-YHESPVRLVLKEIGDIE 358 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKL-KKLPQ----- 429 R LSR+ +G P+D+ +R FL+N L ++ KL +L Q Sbjct: 359 RVLSRVALGSARPRDLVQLRHACAQ-----IPFLRNALAPVVQAKKSKLLGQLDQELGDF 413 Query: 430 -SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 SL + L + + ++ P RDG + +G DA LDE R +RD + + + L++K E T I Sbjct: 414 KSLHQHLMAAIVENPPVLLRDGNVIAEGYDAELDELRQIRDHAGQFLIDLEIKERERTGI 473 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 LKI +N GY+IE+T S A D +I RQT+ N R+ T EL E+++ Sbjct: 474 STLKIGYNRVSGYYIELTRSQAEQAPAD------YIRRQTLKNAERYITPELKSFEDKVL 527 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 ++ + AL E FE L + E L S IA ID+ A A+ N+ RP Sbjct: 528 SSESRALAREKALFEALLENLRENIAHLQMMSSAIAQIDVIANFAHQARLNNWARPEFTP 587 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 T ++ GRHP+VE S PF ND L + ++ ++TGPNMGGKSTF+R Sbjct: 588 ETGIKIQGGRHPVVEAL----SKAPFTPNDTFLDAQH-----RMAIITGPNMGGKSTFMR 638 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q ALI ++A GSYVPA A +G +D++F+R+GSAD+L++G+STFMVEM ET+ IL+ AT Sbjct: 639 QTALISLLAYCGSYVPARAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHAT 698 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA 788 NQS V++DE+GRGT+T DGLS+AWA + L + +C L ATH+ ELT+L S N Sbjct: 699 NQSLVLMDEVGRGTSTYDGLSLAWACVVDLTKRIKCLCLFATHYFELTELG-SEPGIDNY 757 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN-- 846 + + N +I LHKV G A S+G+QV KLAG+P VI A L+ EK + Sbjct: 758 HVTAQELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQ 817 Query: 847 ---QKDMRL-----YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 Q D+ P Q E + + ++ +K + +D ++P AL+ LY +K Sbjct: 818 TSVQSDLFATLDSEVTPSTQVIEKVIEVEVSSPA-LDLLKQIEVDNLTPRQALEQLYELK 876 Query: 899 A 899 A Sbjct: 877 A 877 >gi|307354004|ref|YP_003895055.1| DNA mismatch repair protein MutS [Methanoplanus petrolearius DSM 11571] gi|307157237|gb|ADN36617.1| DNA mismatch repair protein MutS [Methanoplanus petrolearius DSM 11571] Length = 881 Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust. Identities = 321/897 (35%), Positives = 518/897 (57%), Gaps = 53/897 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL-GKDIPMC 84 TP MRQ+ E+KS +P +++F++MGDFYE F +DA + SR L ITLT RG+ G+ +P+ Sbjct: 6 TPAMRQFYEMKSKHPGTVLFFQMGDFYETFGEDAEVVSRELDITLTSRGRDKNGEKMPLA 65 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP+H YI +L+K G+R+A+C+QIE P +AK +V+R+VVR++TPGT+ + + Sbjct: 66 GVPIHAGESYISRLVKKGYRVAVCDQIEDPKKAK-----GIVKRDVVRIITPGTIIDSGM 120 Query: 145 LSPTDSNYLMAV--ARIRTEWAIAWIDISTGIFKISTSNHDRLIS----DIMRIDPREII 198 + + +YLM+V R + A++DISTG F IS S + + S +I R P E I Sbjct: 121 IENSGPSYLMSVMPGRDGEDLGFAFLDISTGEFFISGSGNGEMFSQINSEIARYRPSECI 180 Query: 199 FSEKELSHAEYKSLFETLGNVAV-AQPNVFFDHSISESRIADYYNITTVDTFGSFSQ-VE 256 E + + S + T NV V + FD + + + + + + +++ +G + Sbjct: 181 VPE---NCPKKISDYITGRNVLVTGYDTLHFDIDTARNYLLEKFEVNSLEGYGCMGMDLS 237 Query: 257 KTAAAAAISYIKKTQMVNKPTI-GYPEREDIQSTLFIDSAARSNLEIL---RTLSGSREQ 312 AA A +SY +TQ + I G+ R ++ +D+ NLE+L RT G + Sbjct: 238 VCAAGACLSYACETQKSDLSHIRGFSTRLP-SGSMVLDAITLRNLEVLENIRTRQG--KN 294 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 SL +D + T G R+ + +PL D IN+RL+++ FF N + ++ +L Sbjct: 295 SLYDILDETKTPMGSRVLRSWLTAPLVDRDNINSRLNAVEFFFNNLYIRESLRFLLHRYA 354 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDL--PEELR---GAVEKLKKL 427 D+ R +R+ G P+++ +++ + I +LF + PE + G++E L + Sbjct: 355 DIERIAARISYGNAGPRELVTLKNSLAKIPEIRSLFSEEGAVTPELISCSLGSIESLDEC 414 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 + +E+++ D+ P R GG ++ G + LDE R +K IA Q + T Sbjct: 415 VELIERSIE----DEPPVLARTGGVIKKGYNHDLDELRDSSGSAKEWIAQFQQDERDRTG 470 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 IK+LK+ +N GY+IEVT S+ ++ ++ + K QT +N RFT +L + E+ I Sbjct: 471 IKSLKVSYNKVFGYYIEVTKSNLKLVPQEYQRK------QTTANGERFTLPQLQEKESLI 524 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 NA + +E + ++ + + E+ E + +++I +D+ A L+ NY RP+I+ Sbjct: 525 VNAEERFIALEQDLYDGILTELREKVEEILETAKMIGRLDVLADFAHLSSNFNYVRPVIE 584 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 +S ++ DGRHP+VE+ QSS F+ ND + D + ++ ++TG NM GKST++ Sbjct: 585 DSARLLISDGRHPVVER---NQSSG-FVPNDAGI----DSSDNQILIITGANMAGKSTYM 636 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 R+ AL+ IMAQ G +VPAS A IGI+D++F+RVG+ D+L+SG+STFMVEM+E A+ILN Sbjct: 637 REVALLCIMAQAGCFVPASGAVIGIIDRIFTRVGAFDDLSSGQSTFMVEMLELANILNNV 696 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC--RGLLATHFHELTDLSKSLKRF 785 T++S VILDEIGRGT+TLDG SIA A IEYLH + R L ATHFHE+ D+ +KR Sbjct: 697 TDKSLVILDEIGRGTSTLDGYSIACAVIEYLHGSGSSGPRTLFATHFHEMVDIEGKMKRV 756 Query: 786 HNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH 845 N V D+ I+FL K+IPG +D SYGI V KLAG+P V+ R+ +IL+ ++ + Sbjct: 757 KNYHFAVKDTGSDIVFLRKLIPGASDKSYGIHVAKLAGIPRKVLKRSEEILREEQEKEYC 816 Query: 846 NQKDMRLYYPEI----QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ Y ++ Q + L +N K ++K+K L+ D ++P AL +Y ++ Sbjct: 817 TGGRIQPRYTQMLLVDQPTAVEPALDENTKSLLKKVKDLDPDSLTPREALAVIYQLR 873 >gi|295105666|emb|CBL03210.1| DNA mismatch repair protein MutS [Faecalibacterium prausnitzii SL3/3] Length = 871 Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust. Identities = 310/889 (34%), Positives = 518/889 (58%), Gaps = 47/889 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM+QY+EIK+ + D ++FYR+GDFYE+FFDDA+ ASR L +TLT + L + PMCG Sbjct: 5 SPMMQQYLEIKNQHKDEILFYRIGDFYEMFFDDAVTASRELDLTLTGKQCGLAERAPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+ Y+ +LI G+++AICEQ+E P +AK LV+R+++R+VTPGT+ E +L Sbjct: 65 VPFHSYEGYVARLIAKGYKVAICEQVEDPAKAK-----GLVKRDIIRVVTPGTVIESSML 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRL----ISDIMRIDPREIIFSE 201 +NY+ ++ + + + D+STG I+ D++ I+++ R P E++ + Sbjct: 120 QDDRNNYIASLYLKGKKAGLCFADVSTGTAHITELTADKIAPAVITELCRYHPSEVLLNP 179 Query: 202 KELSHAEYKSLFETLGNVAVA-QPNVFFDHSISESRIADYYNITTVDTFGSFSQ-VEKTA 259 L E + + + +V + + + S + + + T G ++ + + A Sbjct: 180 GLLDCREVTAYIKKNMSCSVELVEDERYAPGLVASALEEQFGRDWPQTTGMVAEGLVRFA 239 Query: 260 AAAAISYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SL 314 AA + Y+ TQ+ K I Y E + ++ + R+NLE+ TL G ++ +L Sbjct: 240 MAALLEYLHDTQIKGVERLKTVITYNEAQFMR----LSPVTRANLELTETLRGREKRGTL 295 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D + T G R+ I PL S IN RL+++ ++ ++ + + L D+ Sbjct: 296 LWVLDKTSTAMGKRMLRSWIEQPLISSQLINHRLNAVEALVRQTMVRGDLTEELHYIADM 355 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEKLKKLPQSLE 432 R ++R G PK+I + + PE EL +++ L + ++ Sbjct: 356 ERLMTRTVYGSATPKEIYTLAQTCDRLPGLRKQAEGCSCPELAELAASIDPL----EDIK 411 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 + + + + P+ +DGG + G A +DE RS+RD +K ++A L+ + +ET I LK Sbjct: 412 ARIYAAVDPEAPSTLKDGGVIAKGYHAEVDELRSIRDNTKGVLAQLEARLRQETGIPKLK 471 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 I +N+ GYFIEV++S +++ + +I +QT+++ R+ T EL +LE++I A Sbjct: 472 IGYNHVFGYFIEVSNSYKNLVP------ETYIRKQTLTSGERYITQELKELESKILGAHE 525 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 + +E F+ L +I Q + + + IA +D+ ALA +A E NYCRP++D+S Sbjct: 526 RLISLERRLFDELLESIGAQLDRIQRTANAIAQLDVLAALAQVAAENNYCRPVVDDSDVL 585 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 + +GRHP+VE+ LK F+ ND L+C D+ ++TGPNM GKST++RQNAL Sbjct: 586 TITEGRHPVVEQVLK---GSMFVPNDTTLNCTTDR----CLIITGPNMAGKSTYMRQNAL 638 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 I +MAQ+GS+VPA+ H+G+VD +F+R+G++D+LA+G+STFMVEM E A IL AT +S Sbjct: 639 IALMAQIGSFVPAASCHVGVVDAIFTRIGASDDLAAGQSTFMVEMTEVAEILKNATAKSL 698 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNR---CRGLLATHFHELTDLSKSLKRFHNAT 789 V+LDEIGRGT+T DG+SIA A +E++ + + C+ L ATH+HELT+L +++ N Sbjct: 699 VVLDEIGRGTSTFDGMSIARAVVEHIADPAKGLGCKTLFATHYHELTELEGTVEGVKNYN 758 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 + V E I FL +++ G AD SYGI+V KLAGLP +V RA+++L+T E N+ + Sbjct: 759 IAVKKRGEDITFLRRIVRGPADDSYGIEVAKLAGLPGSVTRRAHEVLRTLEASAPKNKVE 818 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ + +Q S S+ +EK++ ++++ ++P+ AL LY +K Sbjct: 819 -QMDFDALQEYNSPAVPSE----MMEKLEAVDVETLTPIEALNFLYELK 862 >gi|258623524|ref|ZP_05718525.1| DNA mismatch repair protein MutS [Vibrio mimicus VM573] gi|258584186|gb|EEW08934.1| DNA mismatch repair protein MutS [Vibrio mimicus VM573] Length = 888 Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust. Identities = 313/883 (35%), Positives = 488/883 (55%), Gaps = 37/883 (4%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E+L TPMM+QY+ +K+ NPD L+FYRMGDFYELF+DDA AS L I+LTKRG G+ Sbjct: 36 ESLSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRGASAGE 95 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 96 PIPMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTV 150 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 T++ LLS N + A+ + A +DI++G F++S + + +++ R PRE++ Sbjct: 151 TDEALLSERVDNLIAAIYHHNGRFGYATMDITSGRFQLSEPQTEEEMAAELQRTSPRELL 210 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 F E A + GN +P F+ + ++ ++ + + FG +Q+ Sbjct: 211 FPE---DFAPVHLMANRQGNRR--RPIWEFELATAKQQLNQQFGTRDLVGFGVEQAQLGL 265 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA I Y+K TQ P I + ++ +D+A R NLE+ L+G + +L Sbjct: 266 CAAGCLIQYVKDTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTYNLAGGTDNTLADV 325 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D+ T G R+ I P+ D+ +N RLD+I ++ L + +LK D+ R Sbjct: 326 LDHCATPMGSRMLKRWIHQPMRDTATLNQRLDAIGE-LKEAALYADLHPVLKQIGDIERI 384 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEKLKKLPQSLEKTL 435 L+RL + P+D+A +R ++ + L + + P +LR + + +L LE+ + Sbjct: 385 LARLALRSARPRDLARLRHAMQQLPELHTLLTELEQPHLAQLRTYAQPMDELCDLLERAI 444 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 ++ P RDGG + DG A LDE R L + + + L+ + + I LK+ + Sbjct: 445 K----ENPPVVIRDGGVIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGY 500 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 NN G++I+V+ + ++ ++ RQT+ N R+ EL E+++ N+ + AL Sbjct: 501 NNVHGFYIQVSRGQSHLVPP------HYVRRQTLKNAERYIIEELKQHEDKVLNSKSRAL 554 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E + +E L + ++ E L + IA +D+ LA A+ YCRP + + Sbjct: 555 AVEKQLWEELFDLLLPHLEQLQQLAASIAQLDVLQNLAERAENLEYCRPTLVKEAGIRIL 614 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ + ++PFIAN +L+ ++ ++TGPNMGGKST++RQ ALI + Sbjct: 615 GGRHPVVEQVM----NEPFIANPIELN-----PQRRMLIITGPNMGGKSTYMRQTALIAL 665 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MA +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT+ S V++ Sbjct: 666 MAHIGSYVPAESAQIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATSHSLVLM 725 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA+ E+L L ATH+ ELT+L SL N L + Sbjct: 726 DEIGRGTSTYDGLSLAWASAEWLAREIGALTLFATHYFELTELPNSLPHLANVHLDAVEH 785 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 + I F+H V G A S+G+ V LAG+P VI A L+ E L + + Sbjct: 786 GDSIAFMHAVQEGAASKSFGLAVAGLAGVPKPVIKNARAKLQQLELLSSQPAETRKPSRV 845 Query: 856 EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +I + S L + + + L+ DE++P AL LY +K Sbjct: 846 DIANQLS---LIPEPSVVEQALAELDPDELTPRQALDALYRLK 885 >gi|262278524|ref|ZP_06056309.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262258875|gb|EEY77608.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 879 Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust. Identities = 338/900 (37%), Positives = 504/900 (56%), Gaps = 54/900 (6%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L S TPMM+QY+++K+ +L+FYRMGDFYELFF+DA LA++ LGITLT RGK G+ Sbjct: 9 DLSSHTPMMQQYLKVKTDYQHALLFYRMGDFYELFFEDAHLAAKLLGITLTHRGKASGRP 68 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM GVP H A Y+ +L+K G +AICEQ+ + K V R VVR++TPGTLT Sbjct: 69 IPMAGVPYHAAEGYLARLVKAGRTVAICEQV------GEVTGKGPVDRKVVRILTPGTLT 122 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH--DRLISDIMRIDPREII 198 +D LLS S+ L+++ + + A +D+S GIFK+ ++ ++L ++ R+ P EI+ Sbjct: 123 DDALLSSYQSSNLVSLCIHQNQIGFALLDLSAGIFKVQQQDYKPEQLPIELARLMPSEIL 182 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 E + + + + L +PNV F+ + ++ + D + ++T+ FG + K Sbjct: 183 IDEDLVDTNIIEQIKKHLDCPVTKRPNVDFNQNNAQKTLCDQFTVSTLSGFGLDPLPLAK 242 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFI--DSAARSNLEILRTLSGSREQSLL 315 AAAA I Y K+TQ P I + E QST FI D R NLEI+ L SL Sbjct: 243 AAAAALIHYAKETQKTALPHIRSIQLE--QSTDFIALDPITRRNLEIIEPLF-EHGTSLF 299 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 + ++ T GGRL + + P+ D+ ++ RLD+I IQ +P++ +LK D+ Sbjct: 300 QLVNDCQTAMGGRLLSRTLMQPVRDTALLDARLDAIEQLIQG-YHESPVRLVLKEIGDIE 358 Query: 376 RSLSRLKIGRGEPKDIAVIRDG------IRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 R LSR+ +G P+D+ +R +R+ + + K+ L +L + K L Q Sbjct: 359 RVLSRVALGSARPRDLVQLRHACAQIPALRTALTPVIQAKKSKLLVQLDQELGDFKALHQ 418 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 L + + ++ P RDG + +G DA LDE R +RD + + + L++K E T I Sbjct: 419 HL----MAAIVENPPVLLRDGNVIAEGYDADLDELRQIRDHAGQFLIDLEIKERERTGIN 474 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LKI +N GY+IE+T + A D +I RQT+ N R+ T EL E+++ + Sbjct: 475 TLKIGYNRVSGYYIELTRAQAEQAPAD------YIRRQTLKNAERYITPELKSFEDKVLS 528 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 + + AL E FE L + E L S IA ID+ A A+ N+ RP Sbjct: 529 SESRALAREKALFEALLENLRENIAHLQMMSSAIAQIDVVANFAHQARLNNWARPEFTPE 588 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 T ++ GRHP+VE K PF ND L + ++ ++TGPNMGGKSTF+RQ Sbjct: 589 TGIKIQAGRHPVVEALNK----APFTPNDTFLD-----SQHRMAIITGPNMGGKSTFMRQ 639 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI ++A GSY+PA A +G +D++F+R+GSAD+L++G+STFMVEM ET+ IL+ ATN Sbjct: 640 TALISLLAYCGSYIPAKAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATN 699 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 QS V++DE+GRGT+T DGLS+AWA + L + +C L ATH+ ELT+L N Sbjct: 700 QSLVLMDEVGRGTSTYDGLSLAWACVVDLTKRVKCLCLFATHYFELTELGGE-AGIDNYH 758 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK-LYHHNQK 848 + + N +I LHKV G A S+G+QV KLAG+P VI A L+ EK H Q Sbjct: 759 VTAQELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQT 818 Query: 849 DMR--LYYP-------EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + L+ P +I K + +S ++ +K + +D +SP AL+ LY +KA Sbjct: 819 SFQNDLFAPPDANAGSQIIEKVVEIEVSSPA---LDLLKQIEVDNLSPRQALEQLYELKA 875 >gi|325295187|ref|YP_004281701.1| DNA mismatch repair protein mutS [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065635|gb|ADY73642.1| DNA mismatch repair protein mutS [Desulfurobacterium thermolithotrophum DSM 11699] Length = 842 Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust. Identities = 315/887 (35%), Positives = 509/887 (57%), Gaps = 67/887 (7%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD-- 80 K TP ++QY+E+K DS++ +RMGDFYE+FF+DA +A++ L I LT R GK Sbjct: 3 KKLTPALKQYLELKEKYKDSILMFRMGDFYEMFFEDAEIAAKELEIALTSRA--FGKSSE 60 Query: 81 -IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 PMCGVP H YI KL++ G+++AICEQ+E P KK +V R VVR++TPGT Sbjct: 61 KAPMCGVPHHAVESYIGKLVRKGYKVAICEQLEEPKPGKK-----VVDRGVVRVITPGTY 115 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 ED+ + +L+++ + ++IAW ++STG +T N + L S + + P+EII Sbjct: 116 FEDE----NEDRFLLSIYPNKNNFSIAWTELSTGDLYFATVNREDLKSILSKFKPKEIIV 171 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 E + YK + E L + + Y+ + ++ S+ EK A Sbjct: 172 PE---GFSGYKVIKEVLPETLIQEKE------------KGYFEVKETNSPEVESKSEKRA 216 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTI 318 + + +I++TQ+ P I P+R + +++D + NLE++ ++G E SL + Sbjct: 217 LSGLLEFIEETQLDFTPKIKPPKRYTGEKYIYLDPQTQKNLELIEPIAGKLESASLFGVL 276 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSI-----NFFIQNPILINPIQKILKSSPD 373 + + TG G RL I PL D +I RLD++ +FF+ + IL ++L D Sbjct: 277 NKTKTGMGRRLLKFWILHPLKDKKEIEERLDAVEELKDSFFVADEIL-----ELLSKVYD 331 Query: 374 VPRSLSRLKIGRGEPKDIAVIRD--GIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSL 431 + R LS++ G P+D+A R+ G+ + L K+ L ++ + L + L Sbjct: 332 IERLLSKITSGIASPRDLASFRNSLGVLPDLKKLLADFKSSLLSQIYKNFDDLYDIYCEL 391 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 E+ +L ++ P R+GG +++G + LDE R ++++ ++I+ ++ + + T I +L Sbjct: 392 ER----VLVENPPFTSREGGLIKEGVNPELDELRRIKNEGEKILKEIEERERKRTGISSL 447 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 KI NN GY+IEV+ ++ ++ ++ +I RQT+ N RF T EL + E +I +A Sbjct: 448 KIGFNNVFGYYIEVSKANLHLVPEN------YIRRQTLVNAERFITPELKEFEEKILSAQ 501 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 IE + F L + + ++ + ++ IA ID+ ++ + +A E+ Y +P + + Sbjct: 502 ERIEKIEYQLFVELRKFVSKNADRISKTAEKIATIDVLLSFSKIANERGYTKPRVTEGYS 561 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 +K+G+HP++EK L++ FI ND +L+ + ++TGPNMGGKS FLRQ A Sbjct: 562 IKIKNGKHPVLEKFLEED----FIPNDTELT-----EKEFILIVTGPNMGGKSVFLRQTA 612 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LI IMAQ+GS+VPA A IGIVD++FSRVG+ADNL+ G STFM+EM+ETA+IL A +S Sbjct: 613 LITIMAQIGSFVPAEEAEIGIVDRIFSRVGAADNLSKGLSTFMMEMVETANILQNAGKRS 672 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 +ILDEIGRGT+T DG+SIA A +EY+ + L ATH+HELT+L +K N + Sbjct: 673 LIILDEIGRGTSTYDGMSIAKAVVEYISGKVGAKTLFATHYHELTELEGKVKGVKNFHVT 732 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR 851 V + +E I+F HKV+PG ++ SYGI V +LAGLP VI RA +IL E+ K++ Sbjct: 733 VEEIDEKIVFTHKVLPGASEKSYGIHVAELAGLPKEVIDRAKEILYQLER----GGKELP 788 Query: 852 LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 L + KE+ ++ +KL +++++ + + +PL AL L +K Sbjct: 789 LLRL-AEEKETSWSIGLEEKL-IKELEAIEISTTTPLEALMILSRLK 833 >gi|73669015|ref|YP_305030.1| DNA mismatch repair protein MutS [Methanosarcina barkeri str. Fusaro] gi|90109848|sp|Q46CE2|MUTS_METBF RecName: Full=DNA mismatch repair protein mutS gi|72396177|gb|AAZ70450.1| DNA mismatch repair protein MutS [Methanosarcina barkeri str. Fusaro] Length = 900 Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust. Identities = 332/922 (36%), Positives = 514/922 (55%), Gaps = 74/922 (8%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK-HLGKDI 81 K TP M QY E K PD+L+F+RMGDFYE F +DA ++ L ITLT RGK G+ + Sbjct: 3 KMMTPAMCQYYEAKQAYPDTLIFFRMGDFYESFGEDAKTIAKELEITLTARGKDKSGERM 62 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 P+ G+P H + Y+ +LI G+++AICEQ+E P +AK +V+R VVR+VTPGT + Sbjct: 63 PLAGIPYHAIDTYLPRLINKGYKVAICEQLEDPKKAK-----GIVKRGVVRVVTPGTAID 117 Query: 142 DQLLSPTDSNYLMAVA-----------RIRTEWAIAWIDISTGIFKIS----TSNHDRLI 186 + S +NYLMAVA E ++++DISTG F + + N ++L+ Sbjct: 118 SSMFSDASNNYLMAVAGREIGKPGKNAENEFEIGVSFLDISTGEFLTTQFRDSENFEKLL 177 Query: 187 SDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQ---PNVFFDHSISESRIADYYNI 243 S++ R+ P E I S E +L E L + Q P++ E R+ +++ + Sbjct: 178 SELARMRPSECILPS---SLYENPALAERLRAQTIVQEFAPDISGAKEAGE-RLKNHFRV 233 Query: 244 TTVDTFGSFS-QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEI 302 T++ G + +A AA+ Y + TQM I + +DS NLEI Sbjct: 234 ATLEGMGCENLDFAVYSAWAALEYAQTTQMRELTHINTLRTYSNSEFMILDSVTLRNLEI 293 Query: 303 LRTLSG-SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILI 361 ++ + E SL + ++++ T G R + + PL KIN RLD++ P+L Sbjct: 294 VKNVRDEGDENSLYRILNHTKTPMGSRALKKWLLKPLLSVEKINYRLDAVEELTAKPLLR 353 Query: 362 NPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN---DLPEELR 418 ++ L D+ R + R+ G +D+ ++ + + + + L+N + ++ Sbjct: 354 YDLRNWLSDVRDIERLVGRVVYGNSNARDLVALKKSLEALPPVRDSLLENIESTILNDIA 413 Query: 419 GAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASL 478 + +L ++L + + + D+ P R+GG ++ G +A LDE + + S++ IA+ Sbjct: 414 VGLASFSEL-ENLAEMIDRAIVDEPPISVREGGMIKSGYNAELDELKDIASNSRQWIANF 472 Query: 479 QLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTL 538 Q K E + IK+LK+ +N GY+IEVT++++S + +D +I +QTM+N RF T Sbjct: 473 QQKERERSGIKSLKVGYNKIFGYYIEVTNANSSQVPED------YIRKQTMANAERFFTP 526 Query: 539 ELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKE 598 EL + E+ I A A+ +E E F + + S L ++ I +D+ LA +A+ Sbjct: 527 ELKEKESLILTANEKAIALEYEIFTEILQTLSAHSRELQETAERIGTLDVLTDLAEVAEN 586 Query: 599 QNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGP 658 NY RP + + +++DGRHP+VE T+ F+ ND ++ C ++ L+TGP Sbjct: 587 NNYIRPQLTDDCKILIRDGRHPVVENTVHGG----FVPNDTEMDCKENQ----FLLVTGP 638 Query: 659 NMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMI 718 NM GKST++RQ ALI IMAQ+GS+VPASYA IGI+D++F+R+G+ D+LASG+STFMVEM+ Sbjct: 639 NMAGKSTYMRQTALIAIMAQVGSFVPASYASIGIIDQVFTRIGAFDDLASGQSTFMVEMV 698 Query: 719 ETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC--RGLLATHFHELT 776 E A+ILN A+ +S V+LDEIGRGT+T DG SIA A +E+LH + R L ATH+H+LT Sbjct: 699 ELANILNNASPRSLVLLDEIGRGTSTYDGYSIAKAVVEFLHNRGKVGVRALFATHYHQLT 758 Query: 777 DLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 L + LKR N + V + ++FL K++PG D SYGIQV +LAG+P VI RA +IL Sbjct: 759 ALEEKLKRVKNYHVAVKEEGHELVFLRKIVPGATDRSYGIQVARLAGVPEKVIERANEIL 818 Query: 837 KTFEKLY-------HHNQK-----------DMRLYYPEIQTKESKNNLSK-NDKLFVEKI 877 K E+ N K M L+ P +S N +K N VE + Sbjct: 819 KELERENVLEEVEDSKNGKKRKSKATARYTQMMLFDP----GDSGGNTAKVNRPSPVETV 874 Query: 878 -KCLNLDEMSPLTALKTLYAVK 898 K LN+DEM+P+ AL L+ +K Sbjct: 875 LKKLNVDEMTPIEALNKLHELK 896 >gi|293115594|ref|ZP_05792223.2| DNA mismatch repair protein MutS [Butyrivibrio crossotus DSM 2876] gi|292808993|gb|EFF68198.1| DNA mismatch repair protein MutS [Butyrivibrio crossotus DSM 2876] Length = 900 Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust. Identities = 325/896 (36%), Positives = 511/896 (57%), Gaps = 47/896 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD--IPM 83 +PMM++Y+E K D ++FYR+GDFYE+FFDDA+ SR L +TLT GK G++ PM Sbjct: 22 SPMMQKYLETKKEYEDCVLFYRLGDFYEMFFDDAINVSRELELTLT--GKDCGQEERAPM 79 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CG+P H A+ YI +L++ G+++AICEQ+E P AK LV+R V+++VTPGT Sbjct: 80 CGIPYHAADSYINRLVEKGYKVAICEQVEDPKTAK-----GLVKREVIKVVTPGTNFNPM 134 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREIIFSEK 202 L T +NY+M VA + +A DI+TG F I+ + +R LI +I + P EI+F+E Sbjct: 135 ALDETKNNYIMCVAYMPDSIGLATSDITTGEFLITEVSSERELIDEINKFTPSEILFNEA 194 Query: 203 -ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAA 260 +S L + L +FD E I ++N+ T+D G S + AA Sbjct: 195 FTISGINISDLKDRLSFAESVLEPWYFDDKNDEDIILRHFNVATLDGLGISDYKTAVVAA 254 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTID 319 A ++Y+ +TQ + P + + IDS+ R NLE++ T+ +++ SLL +D Sbjct: 255 GALLNYLYETQKNSLPHLTRITPYATGRYMIIDSSTRRNLELVETMREKQKKGSLLWVLD 314 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL I PL I R ++ FI N + +++ L D+ R + Sbjct: 315 KTKTAMGARLLRNMIEQPLLIKDDIVARQKAVTEFINNYVDCAELREYLNPVYDLERLVG 374 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 R+ P+D+ + I I L K+ L + + ++ L+ + +E ++ Sbjct: 375 RISTKSASPRDLIAFKGSIAMLPPIKKLLASFKSSLIKSIYEELDVLEDICSLIEASIV- 433 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 D+ P +DGG +++G + +D R + K+ + +L+ E T IKNLKIK+N Sbjct: 434 ---DEPPIAIKDGGLIKEGYNEEIDRLRHAKTDGKQWLLNLEASEKERTGIKNLKIKYNK 490 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+ EVT+S +++ D +I +QT++N RFTTL+L +LE I +A + + Sbjct: 491 VFGYYFEVTNSFKNMVPDD------YIRKQTLTNAERFTTLKLKELEEVILSAEDKLFSL 544 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + F + + I + + ++ +A D+ LAI+A + NY P I+ ++ G Sbjct: 545 EYDLFTEVRDRIAGEVLRIQTTAKAVAKADVFSNLAIVAMQNNYVCPTINEKGLIEIEGG 604 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VEK + S+ F+ ND L D + ++ ++TGPNM GKST++RQ ALIV+MA Sbjct: 605 RHPVVEKMI---SNGLFVENDTIL----DNHKNRISIITGPNMAGKSTYMRQTALIVLMA 657 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+GSY+PA+ A+IGIVD++F+RVG++D+LASG+STFMVEM E A+IL AT+ S +ILDE Sbjct: 658 QIGSYIPATKANIGIVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSDSLLILDE 717 Query: 738 IGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 IGRGT+T DGLSIAWA +E++ + L ATH+HELT+L ++ +N + V + Sbjct: 718 IGRGTSTFDGLSIAWAVVEHISNPKLLGAKTLFATHYHELTELEGQMESVNNYCIAVKEQ 777 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF---------EKLYHHN 846 + IIFL K++ G AD SYGIQV KLAG+P++VI RA +I+ +++ Sbjct: 778 GDDIIFLRKIVKGGADKSYGIQVAKLAGVPSSVIERAKEIVAELADNDISAKAKEIARLG 837 Query: 847 QKDMRLYYPEIQTKESKNNLSKNDKL----FVEKIKCLNLDEMSPLTALKTLYAVK 898 L P+ K+ +S D + +++IK L L +M+P+ AL TL+ ++ Sbjct: 838 ISKEALKIPDSVGKDKYVQMSLFDAVNNDDIIDEIKDLELTKMTPIDALNTLFRIQ 893 >gi|283797910|ref|ZP_06347063.1| DNA mismatch repair protein MutS [Clostridium sp. M62/1] gi|291074377|gb|EFE11741.1| DNA mismatch repair protein MutS [Clostridium sp. M62/1] Length = 881 Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust. Identities = 306/818 (37%), Positives = 471/818 (57%), Gaps = 30/818 (3%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM Y+E K PD ++FYR+GDFYE+FF+DA ASR L ITLT + L + PMCGVP Sbjct: 1 MMTHYLETKKQYPDCILFYRLGDFYEMFFEDAKTASRELEITLTGKECGLEERAPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H Y+ KL++ G+++AI EQ+E P AK LV+R V+R+VTPGT+T Q L Sbjct: 61 YHAVESYLNKLVQKGYKVAIAEQMEDPKTAK-----GLVKREVIRVVTPGTITNSQALEE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREIIFSEK-ELS 205 + +NYLM + + + I+ +DISTG + ++ +R L+ +I + P EII +E +S Sbjct: 116 SKNNYLMGIVYMDGMFGISSVDISTGDYLVTEVKSERTLLDEIFKFAPSEIICNEAFYMS 175 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAI 264 + + L L V A N FF + +++++ +D G S + AA A + Sbjct: 176 GVDLEELKNRLHVVVTALENRFFSDDSCRRLLREHFHVNHLDGLGLSEYEAGTIAAGAVL 235 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT 323 SY+ +TQ + + +D++ R NLE+ TL +++ +LL +D + T Sbjct: 236 SYLYETQKSTLDHLTAITPYTTGQYMMLDTSTRRNLELTETLREKQKRGTLLWVLDKTKT 295 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G R+ + PL D I R ++I N I + + L + D+ R + R+ Sbjct: 296 AMGARMLRSFVEQPLIDREGILARQNAIEELNMNYISREEMAEYLNAIYDLERLIGRISY 355 Query: 384 GRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 P+D+ ++ + +I + DL E+ ++ L++L +E + D Sbjct: 356 KTANPRDLIAFKNSLAMLPHIKKILGEFGADLLREVDSGMDTLEELTALIEHAIV----D 411 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 D P RDGG ++DG D R + + K +A+L+ + E+T IKNLKIK N GY Sbjct: 412 DPPISVRDGGIIKDGYSEEADRLRHAKTEGKDWLAALEAEEREKTGIKNLKIKFNKVFGY 471 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 + EVT+S KD + D F+ RQT++N RFTT L +LE I A + +E + Sbjct: 472 YFEVTNSF-----KD-QVPDYFVRRQTLTNAERFTTDRLKELEGTILGAEDRLFSLEYDL 525 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 F + + Q E + ++ IA++D+ I+L+ +A NY +P I+ +K+GRHP+ Sbjct: 526 FCQVRDTAGAQVEKIQQTAKAIALLDVLISLSTVATRHNYVKPKINERGVIHIKNGRHPV 585 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE+ ++ F++ND L D ++ ++TGPNM GKST++RQ ALI +MAQ+GS Sbjct: 586 VEQMMRDDM---FVSNDTYL----DNGKNRISIITGPNMAGKSTYMRQTALITLMAQIGS 638 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA A+IG+ D++F+RVG++D+LASG+STFMVEM E A+IL AT S +ILDEIGRG Sbjct: 639 FVPADEANIGLCDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATRNSLLILDEIGRG 698 Query: 742 TATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 T+T DGLSIAWA +EY+ T + L ATH+HELT+L ++ +N + V + + I Sbjct: 699 TSTFDGLSIAWAVVEYISNTKTLGAKTLFATHYHELTELEGAISGVNNYCIAVKEQGDNI 758 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILK 837 +FL K++ G AD SYGIQV KLAG+P VI+RA ++++ Sbjct: 759 VFLRKIVKGGADKSYGIQVAKLAGVPEQVITRAKELVE 796 >gi|90412105|ref|ZP_01220112.1| DNA mismatch repair protein [Photobacterium profundum 3TCK] gi|90327083|gb|EAS43462.1| DNA mismatch repair protein [Photobacterium profundum 3TCK] Length = 845 Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust. Identities = 320/882 (36%), Positives = 493/882 (55%), Gaps = 49/882 (5%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+Q++ IK+ NPD+L+FYRMGDFYELFFDDA AS+ L ITLTKRG G IPM G+P Sbjct: 1 MMQQFLRIKAENPDTLLFYRMGDFYELFFDDAKRASQLLDITLTKRGSSNGHPIPMAGLP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H Y+ KL++ G +AICEQI P +K V R VVR+VTPGT++++ LLS Sbjct: 61 YHAVEGYLAKLVQQGVSVAICEQIGDPAT-----SKGPVDRQVVRIVTPGTVSDEALLSE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEK-ELS 205 N + A+ + + A +DI++G F +S + + +++ R P E+++ E L Sbjct: 116 RRDNLVAAIYQNSKGFGYATLDITSGRFMLSEPETEEAMQAELQRTSPAELLYPEDFTLM 175 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK-----TAA 260 H + E + +P FD + ++ + + FG VEK +AA Sbjct: 176 H-----MIEAIKGTR-RRPIWEFDLDTARQQLTMQFGTRDLIGFG----VEKAERGLSAA 225 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 + Y+K TQ P I + ++ +D+A R NLE+ + LSG + +L +D+ Sbjct: 226 GCLLQYVKDTQRTALPHIRAITLDSKDHSVILDAATRRNLELTQNLSGGFDNTLASVLDH 285 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G RL + P+ D+ ++N RLD+I F + I + ++L D+ R L+R Sbjct: 286 TATPMGSRLLKRWLHQPIRDTKQLNHRLDAIAAFKDTGMFIE-VAEVLHHMGDLERILAR 344 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEKLKKLPQSLEKTLSSM 438 L + P+D+A +R ++S + + + P EL + + L + LE+ + Sbjct: 345 LALRSARPRDLARMRSALQSLPQLAEVLADIEQPRIGELANSSAPMDDLCELLERAII-- 402 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 ++ P RDGG L G +A LDE R L D +K+ + L+ + E+ I +LK+ N Sbjct: 403 --ENPPVIIRDGGVLAPGYNAELDEWRDLADGAKKFLDDLETREREQHGIDSLKVGFNQV 460 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 G+FI+++ + + + D ++ RQT+ N R+ EL + E+++ N+ + AL +E Sbjct: 461 HGFFIQISRGQSHL------APDHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALGLE 514 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + +E L + ++ E L NA+ ++ +D+ LA A NYCRP + + T + GR Sbjct: 515 KKLWEELFDQLLPHLEQLQNAASALSELDVLANLAERADTLNYCRPELTDQTGIEIAAGR 574 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ L S+PFIAN +S +D+ ++ ++TGPNMGGKST++RQ ALI +MA Sbjct: 575 HPVVEQVL----SEPFIANP--ISLHHDR---RMLIITGPNMGGKSTYMRQTALIALMAH 625 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT++S V++DEI Sbjct: 626 VGSFVPAEAVKIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATSKSLVLMDEI 685 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGLS+AWA+ E+L E L ATH+ ELT+L + N L + + Sbjct: 686 GRGTSTYDGLSLAWASAEWLAEKIAAMTLFATHYFELTELPSMMDGLANVHLDAVEHGDE 745 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 I F+H V G A SYG+ V LAG+P VI RA L E H + P Sbjct: 746 IAFMHAVQEGAASKSYGLAVASLAGVPKAVIKRAKAKLTQLETTGHQQA----IKNPSKA 801 Query: 859 TKESKN-NLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 +E + L E + +N DEM+P AL LY +KA Sbjct: 802 PREEQQLTLLPEPSDVEEALAKVNPDEMTPRQALDELYRLKA 843 >gi|262190767|ref|ZP_06048994.1| DNA mismatch repair protein MutS [Vibrio cholerae CT 5369-93] gi|262033352|gb|EEY51863.1| DNA mismatch repair protein MutS [Vibrio cholerae CT 5369-93] Length = 862 Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust. Identities = 311/883 (35%), Positives = 489/883 (55%), Gaps = 37/883 (4%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E+L TPMM+QY+ +K+ NPD L+FYRMGDFYELF+DDA AS L I+LTKRG G+ Sbjct: 10 ESLSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRGASAGE 69 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 70 PIPMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTV 124 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 T++ LLS N + A+ + A +DI++G F++S + + +++ R PRE++ Sbjct: 125 TDEALLSERVDNLIAAIYHHNGRFGYATMDITSGRFQLSEPQTEEEMAAELQRTSPRELL 184 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 F E + + GN +P F+ ++ ++ + + FG +++ Sbjct: 185 FPE---DFSPVHLMASRQGNRR--RPIWEFELDTAKQQLNQQFGTRDLVGFGVEQAKLGL 239 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA I Y+K TQ P I + ++ +D+A R NLE+ L+G + +L + Sbjct: 240 CAAGCLIQYVKDTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTHNLAGGTDNTLAEV 299 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D+ T G R+ I P+ D+ +N RLD+I ++ L + +LK D+ R Sbjct: 300 LDHCATPMGSRMLKRWIHQPMRDNATLNQRLDAITE-LKETALYGELHPVLKQIGDIERI 358 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTL 435 L+RL + P+D+A +R ++ + ++ LK ELR E + +L LE+ + Sbjct: 359 LARLALRSARPRDLARLRHAMQQLPELHSVMSELKQPHLTELRTHAEPMDELCDLLERAI 418 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 ++ P RDGG + DG A LDE R L + + + L+ + + I LK+ + Sbjct: 419 K----ENPPVVIRDGGVIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGY 474 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 NN G++I+V+ + ++ ++ RQT+ N R+ EL E+++ N+ + AL Sbjct: 475 NNVHGFYIQVSRGQSHLVPP------HYVRRQTLKNAERYIIEELKQHEDKVLNSKSRAL 528 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E + +E L + ++ E L + +A +D+ LA A+ YCRP + ++ Sbjct: 529 ALEKQLWEELFDLLLPHLEQLQQLAASVAQLDVLQNLAERAENLEYCRPTLVQEAGIHIQ 588 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ + ++PFIAN +L+ ++ ++TGPNMGGKST++RQ ALI + Sbjct: 589 GGRHPVVERVM----NEPFIANPIELNPQR-----RMLIITGPNMGGKSTYMRQTALIAL 639 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MA +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V++ Sbjct: 640 MAHIGSYVPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLM 699 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA+ E+L + L ATH+ ELT+L L N L + Sbjct: 700 DEIGRGTSTYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEH 759 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 +GI F+H V G A SYG+ V LAG+P VI A L+ E L + + + Sbjct: 760 GDGIAFMHAVQEGAASKSYGLAVAGLAGVPKPVIKNARAKLQQLELLSSQPAETRKPSHV 819 Query: 856 EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +I + S L + + ++ D+++P AL LY +K Sbjct: 820 DIANQLS---LIPEPSAVEQALAGVDPDQLTPRQALDMLYQLK 859 >gi|308048571|ref|YP_003912137.1| DNA mismatch repair protein MutS [Ferrimonas balearica DSM 9799] gi|307630761|gb|ADN75063.1| DNA mismatch repair protein MutS [Ferrimonas balearica DSM 9799] Length = 854 Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust. Identities = 314/888 (35%), Positives = 491/888 (55%), Gaps = 52/888 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 NL+ TPMMRQY+ IK+ +PD L+FYRMGDFYELFFDDA A+ L I+LT RG G Sbjct: 8 NLEQHTPMMRQYLTIKAQHPDVLLFYRMGDFYELFFDDAKRAAELLDISLTARGHAAGDP 67 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM GVP H Y+ +L++ G +AICEQI P +K V R VVR+VTPGT+T Sbjct: 68 IPMAGVPYHAVEGYLARLVQQGVSVAICEQIGDPAT-----SKGPVERQVVRIVTPGTVT 122 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIF 199 ++ LL N L AV R ++ A +DI++G F ++ ++ + L +++ R P E+++ Sbjct: 123 DEALLQERQDNLLAAVYESRGQYGYATLDIASGRFVVNELADDEALQAELQRTRPAELLY 182 Query: 200 SEKELSHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 E LF + + +P F+ + + + + + + FG Q Sbjct: 183 PE----------LFPRMDLIDHLKGCRRRPEWEFELGTARALLNEQFGTRDLTGFG-VEQ 231 Query: 255 VEKTAAAAA--ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 E+ AA + Y+K TQ P I +E S + +D+A R NLE+ + L+G + Sbjct: 232 AERALCAAGCLMQYVKDTQRTALPHIRALVKEQDGSAIVLDAATRRNLELTQNLAGGFDN 291 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 +L +D + T G RL + PLT + + RLDS+ ++ + ++LK Sbjct: 292 TLAAVLDRTTTAMGSRLLKRWLHQPLTQRSVLEGRLDSVACLKDQTAYLD-LAELLKPVG 350 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP-EELRGAVEKLKKLPQSL 431 D+ R L+RL + P+D+ +R + + L +LP +L +L + P+ L Sbjct: 351 DLERVLARLALRSARPRDLTRLRQALGQLPQLRELL--AELPGRQLAQLHNQLGEFPEQL 408 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + L+ + D+ P RDGG L +G +A LDE R+L + + L+ + E + I L Sbjct: 409 D-LLTRAIKDNPPVVIRDGGVLAEGYNAELDELRALSQGATDFLTQLEQQERERSGIATL 467 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 K+ +N G+FIEV+ + ++++ + ++ RQT+ N R+ EL +LE+++ + Sbjct: 468 KVGYNKVHGFFIEVSRAQSALVPSN------YVRRQTLKNTERYIVPELKELEDKVLTSQ 521 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + AL +E +E L + ++ +L ++ A +D+ LA A +Y RP + Sbjct: 522 SQALALEKRLYEELFDLLLPVLPALQESAFACAELDVLQNLAERADTLDYHRPQLSEQPG 581 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 + +GRHP+VE+ + S+PFIAN LS ++ ++TGPNMGGKST++RQ A Sbjct: 582 IQIDNGRHPVVEQVM----SEPFIANPVLLSPQR-----RMLIVTGPNMGGKSTYMRQTA 632 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LI ++A +GS+VPA +A +G VD++F+R+G++D+LASGRSTFMVEM ETA+ILN AT +S Sbjct: 633 LITLLAHIGSFVPAEHAVVGPVDRIFTRIGASDDLASGRSTFMVEMTETANILNNATERS 692 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 V++DEIGRGT+T DGLS+AWA ++L ++ R L ATH+ ELT+L L+ HN L Sbjct: 693 LVLMDEIGRGTSTYDGLSLAWAAAQHLAKSIRAMTLFATHYFELTELPSQLEGVHNVHLD 752 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR 851 + + I F+H V G A SYG+QV LAG+P V++ A L E+ Sbjct: 753 AVEHGDTIAFMHAVQEGPASRSYGLQVAALAGVPKLVVAAAKQRLSQLEQQPR------- 805 Query: 852 LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 P + + L VE ++ L+ D ++P AL LY +KA Sbjct: 806 -VAPSAEVSGGQLPLLPEPHPVVELLERLDPDALTPRQALDMLYQLKA 852 >gi|121728557|ref|ZP_01681579.1| DNA mismatch repair protein MutS [Vibrio cholerae V52] gi|121629169|gb|EAX61610.1| DNA mismatch repair protein MutS [Vibrio cholerae V52] Length = 886 Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust. Identities = 313/889 (35%), Positives = 489/889 (55%), Gaps = 49/889 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E+L TPMM+QY+ +K+ NPD L+FYRMGDFYELF+DDA AS L I+LTKRG G+ Sbjct: 34 ESLSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRGASAGE 93 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 94 PIPMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTV 148 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 T++ LLS N + A+ + A +DI++G F++S + + +++ R PRE++ Sbjct: 149 TDEALLSERVDNLIAAIYHHNGRFGYATMDITSGRFQLSEPQTEEEMAAELQRTSPRELL 208 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 F E + + GN +P F+ ++ ++ + + FG +++ Sbjct: 209 FPE---DFSPVHLMASRQGNRR--RPIWEFELDTAKQQLNQQFGTRDLVGFGVEQAKLGL 263 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA I Y+K TQ P I + ++ +D+A R NLE+ L+G + +L + Sbjct: 264 CAAGCLIQYVKDTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTHNLAGGTDNTLAEV 323 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D+ T G R+ I P+ D+ +N RLD+I ++ L + +LK D+ R Sbjct: 324 LDHCATPMGSRMLKRWIHQPMRDNATLNQRLDAITE-LKETALYGELHPVLKQIGDIERI 382 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTL 435 L+RL + P+D+A +R ++ + ++ LK ELR E + +L LE+ + Sbjct: 383 LARLALRSARPRDLARLRHAMQQLPELHSVMSELKQPHLTELRTHAEPMDELCDLLERAI 442 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 ++ P RDGG + DG A LDE R L + + + L+ + + I LK+ + Sbjct: 443 K----ENPPVVIRDGGVIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGY 498 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 NN G++I+V+ + ++ ++ RQT+ N R+ EL E+++ N+ + AL Sbjct: 499 NNVHGFYIQVSRGQSHLVPP------HYVRRQTLKNAERYIIEELKQHEDKVLNSKSRAL 552 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E + +E L + ++ E L + +A +D+ LA A+ YCRP + ++ Sbjct: 553 ALEKQLWEELFDLLMPHLEQLQQLAASVAQLDVLQNLAERAENLEYCRPTLVQEAGIHIQ 612 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ + ++PFIAN +L+ ++ ++TGPNMGGKST++RQ ALI + Sbjct: 613 GGRHPVVERVM----NEPFIANPIELN-----PQRRMLIITGPNMGGKSTYMRQTALIAL 663 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MA +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V++ Sbjct: 664 MAHIGSYVPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLM 723 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA+ E+L + L ATH+ ELT+L L N L + Sbjct: 724 DEIGRGTSTYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEH 783 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 +GI F+H V G A SYG+ V LAG+P VI A L+ E L P Sbjct: 784 GDGIAFMHAVQEGAASKSYGLAVAGLAGVPKPVIKNARAKLQQLELLSSQ---------P 834 Query: 856 EIQTKESKNNLSKNDKLFVE------KIKCLNLDEMSPLTALKTLYAVK 898 K S+ +++ L E + ++ D+++P AL LY +K Sbjct: 835 AETRKPSRVDIANQLSLIPEPSAVEQALAGVDPDQLTPRQALDMLYQLK 883 >gi|260555570|ref|ZP_05827791.1| DNA mismatch repair protein MutS [Acinetobacter baumannii ATCC 19606] gi|260412112|gb|EEX05409.1| DNA mismatch repair protein MutS [Acinetobacter baumannii ATCC 19606] Length = 881 Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust. Identities = 339/901 (37%), Positives = 502/901 (55%), Gaps = 54/901 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L + TPMM+QY+++K +L+FYRMGDFYELFF+DA LA++ LGITLT RGK G Sbjct: 9 DLSNHTPMMQQYLKVKKDYQHALLFYRMGDFYELFFEDAHLAAKLLGITLTHRGKANGNP 68 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM GVP H+A Y+ +L+K G +AICEQ+ + K V R VVR++TPGTLT Sbjct: 69 IPMAGVPYHSAEGYLARLVKAGRTVAICEQV------GEVTGKGPVERKVVRILTPGTLT 122 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH--DRLISDIMRIDPREII 198 +D LL+ S+ L+A+ + + A +D+S GIFK+ ++ ++L ++ R+ P EI+ Sbjct: 123 DDALLTSYQSSNLVALCIHQNQIGFALLDLSAGIFKVQQQDYKPEQLPIELARLMPSEIL 182 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 E + + + + L +PNV F+ + ++ + D ++++T+ FG + K Sbjct: 183 IDEDLVDPNIIEQIKKHLDCPVTKRPNVDFNLNNAQKTLCDQFSVSTLSGFGLDPLPLAK 242 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFI--DSAARSNLEILRTLSGSREQSLL 315 AAAA I Y K+TQ P I E QST FI D R NLEI+ L SL Sbjct: 243 AAAAALIHYAKETQKTALPHIRSILLE--QSTDFIALDPITRRNLEIIEPLF-EHGTSLF 299 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 + ++ T GGRL + + P+ D+ ++ RLD+I IQ +P++ +LK D+ Sbjct: 300 QLVNDCQTAMGGRLLSRTLMQPVRDTALLDARLDAIEQLIQG-YHESPVRLVLKEIGDIE 358 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKL-KKLPQ----- 429 R LSR+ +G P+D+ +R FL+N L ++ KL +L Q Sbjct: 359 RVLSRVALGSARPRDLVQLRHACAQ-----IPFLRNALAPVVQAKKTKLLGQLDQELGDF 413 Query: 430 -SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 SL + L + + ++ P RDG + +G DA LDE R +RD + + + L++K E T I Sbjct: 414 KSLHQHLMAAIVENPPVLLRDGNVIAEGYDAELDELRQIRDHAGQFLIDLEIKERERTGI 473 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 LKI +N GY+IE+T + A D +I RQT+ N R+ T EL E+++ Sbjct: 474 STLKIGYNRVSGYYIELTRAQAEQAPAD------YIRRQTLKNAERYITPELKSFEDKVL 527 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 ++ + AL E FE L + E L S IA ID+ A A+ N+ RP Sbjct: 528 SSESRALAREKALFEALLENLRENIAHLQMMSSAIAQIDVIANFAHQARLNNWARPEFTP 587 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 T ++ GRHP+VE S PF ND L + ++ ++TGPNMGGKSTF+R Sbjct: 588 ETGIKIQGGRHPVVEAL----SKAPFTPNDTFLDVQH-----RMAIITGPNMGGKSTFMR 638 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q ALI ++A GSYVPA A +G +D++F+R+GSAD+L++G+STFMVEM ET+ IL+ AT Sbjct: 639 QTALISLLAYCGSYVPARAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHAT 698 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA 788 NQS V++DE+GRGT+T DGLS+AWA + L + +C L ATH+ ELT+L S N Sbjct: 699 NQSLVLMDEVGRGTSTYDGLSLAWACVVDLTKRVKCLCLFATHYFELTELG-SEPGIDNY 757 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN-- 846 + + N +I LHKV G A S+G+QV KLAG+P VI A L+ EK + Sbjct: 758 HVTAQELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQ 817 Query: 847 ---QKDMRL-----YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 Q D+ P Q E + + ++ +K + +D ++P AL+ LY +K Sbjct: 818 ISVQSDLFATLDSEVTPSTQVIEKVIEVEASSPA-LDLLKQIEVDNLTPRQALEQLYELK 876 Query: 899 A 899 A Sbjct: 877 A 877 >gi|153214934|ref|ZP_01949717.1| DNA mismatch repair protein MutS [Vibrio cholerae 1587] gi|124115007|gb|EAY33827.1| DNA mismatch repair protein MutS [Vibrio cholerae 1587] Length = 862 Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust. Identities = 313/889 (35%), Positives = 489/889 (55%), Gaps = 49/889 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E+L TPMM+QY+ +K+ NPD L+FYRMGDFYELF+DDA AS L I+LTKRG G+ Sbjct: 10 ESLSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRGASAGE 69 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 70 PIPMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTV 124 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 T++ LLS N + A+ + A +DI++G F++S + + +++ R PRE++ Sbjct: 125 TDEALLSERVDNLIAAIYHHNGRFGYATMDITSGRFQLSEPQTEEEMAAELQRTSPRELL 184 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 F E + + GN +P F+ ++ ++ + + FG +++ Sbjct: 185 FPE---DFSPVHLMASRQGNRR--RPIWEFELDTAKQQLNQQFGTRDLVGFGVEQAKLGL 239 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA I Y+K TQ P I + ++ +D+A R NLE+ L+G + +L + Sbjct: 240 CAAGCLIQYVKDTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTHNLAGGTDNTLAEV 299 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D+ T G R+ I P+ D+ +N RLD+I ++ L + +LK D+ R Sbjct: 300 LDHCATPMGSRMLKRWIHQPMRDNATLNQRLDAITE-LKETALYGELHPVLKQIGDIERI 358 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTL 435 L+RL + P+D+A +R ++ + ++ LK ELR E + +L LE+ + Sbjct: 359 LARLALRSARPRDLARLRHAMQQLPELHSVMSELKQPHLTELRTHAEPMNELCDLLERAI 418 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 ++ P RDGG + DG A LDE R L + + + L+ + + I LK+ + Sbjct: 419 K----ENPPVVIRDGGVIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGY 474 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 NN G++I+V+ + ++ ++ RQT+ N R+ EL E+++ N+ + AL Sbjct: 475 NNVHGFYIQVSRGQSHLVPP------HYVRRQTLKNAERYIIEELKQHEDKVLNSKSRAL 528 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E + +E L + ++ E L + +A +D+ LA A+ YCRP + ++ Sbjct: 529 ALEKQLWEELFDLLLPHLEQLQQLAASVAQLDVLQNLAERAENLEYCRPTLVQEAGIHIQ 588 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ + ++PFIAN +L+ ++ ++TGPNMGGKST++RQ ALI + Sbjct: 589 GGRHPVVERVM----NEPFIANPIELNPQR-----RMLIITGPNMGGKSTYMRQTALIAL 639 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MA +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V++ Sbjct: 640 MAHIGSYVPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLM 699 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA+ E+L + L ATH+ ELT+L L N L + Sbjct: 700 DEIGRGTSTYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEH 759 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 +GI F+H V G A SYG+ V LAG+P VI A L+ E L P Sbjct: 760 GDGIAFMHAVQEGAASKSYGLAVAGLAGVPKPVIKNARAKLQQLELLSSQ---------P 810 Query: 856 EIQTKESKNNLSKNDKLFVE------KIKCLNLDEMSPLTALKTLYAVK 898 K S+ +++ L E + ++ D+++P AL LY +K Sbjct: 811 AETRKPSRVDIANQLSLIPEPSAVEQALAGVDPDQLTPRQALDMLYQLK 859 >gi|153826936|ref|ZP_01979603.1| DNA mismatch repair protein MutS [Vibrio cholerae MZO-2] gi|254291220|ref|ZP_04962016.1| DNA mismatch repair protein MutS [Vibrio cholerae AM-19226] gi|149739239|gb|EDM53507.1| DNA mismatch repair protein MutS [Vibrio cholerae MZO-2] gi|150422914|gb|EDN14865.1| DNA mismatch repair protein MutS [Vibrio cholerae AM-19226] Length = 862 Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust. Identities = 313/889 (35%), Positives = 489/889 (55%), Gaps = 49/889 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E+L TPMM+QY+ +K+ NPD L+FYRMGDFYELF+DDA AS L I+LTKRG G+ Sbjct: 10 ESLSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRGASAGE 69 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 70 PIPMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTV 124 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 T++ LLS N + A+ + A +DI++G F++S + + +++ R PRE++ Sbjct: 125 TDEALLSERVDNLIAAIYHHNGRFGYATMDITSGRFQLSEPQTEEEMAAELQRTSPRELL 184 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 F E + + GN +P F+ ++ ++ + + FG +++ Sbjct: 185 FPE---DFSPVHLMASRQGNRR--RPIWEFELDTAKQQLNQQFGTRDLVGFGVEQAKLGL 239 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA I Y+K TQ P I + ++ +D+A R NLE+ L+G + +L + Sbjct: 240 CAAGCLIQYVKDTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTHNLAGGTDNTLAEV 299 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D+ T G R+ I P+ D+ +N RLD+I ++ L + +LK D+ R Sbjct: 300 LDHCATPMGSRMLKRWIHQPMRDNATLNQRLDAITE-LKETALYGELHPVLKQIGDIERI 358 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTL 435 L+RL + P+D+A +R ++ + ++ LK ELR E + +L LE+ + Sbjct: 359 LARLALRSARPRDLARLRHAMQQLPELHSVMSELKQPHLTELRTHAEPMDELCDLLERAI 418 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 ++ P RDGG + DG A LDE R L + + + L+ + + I LK+ + Sbjct: 419 K----ENPPVVIRDGGVIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGY 474 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 NN G++I+V+ + ++ ++ RQT+ N R+ EL E+++ N+ + AL Sbjct: 475 NNVHGFYIQVSRGQSHLVPP------HYVRRQTLKNAERYIIEELKQHEDKVLNSKSRAL 528 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E + +E L + ++ E L + +A +D+ LA A+ YCRP + ++ Sbjct: 529 ALEKQLWEELFDLLLPHLEQLQQLAASVAQLDVLQNLAERAENLEYCRPTLVQEAGIHIQ 588 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ + ++PFIAN +L+ ++ ++TGPNMGGKST++RQ ALI + Sbjct: 589 GGRHPVVERVM----NEPFIANPIELNPQR-----RMLIITGPNMGGKSTYMRQTALIAL 639 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MA +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V++ Sbjct: 640 MAHIGSYVPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLM 699 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA+ E+L + L ATH+ ELT+L L N L + Sbjct: 700 DEIGRGTSTYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEH 759 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 +GI F+H V G A SYG+ V LAG+P VI A L+ E L P Sbjct: 760 GDGIAFMHAVQEGAASKSYGLAVAGLAGVPKPVIKNARAKLQQLELLSSQ---------P 810 Query: 856 EIQTKESKNNLSKNDKLFVE------KIKCLNLDEMSPLTALKTLYAVK 898 K S+ +++ L E + ++ D+++P AL LY +K Sbjct: 811 AETRKPSRVDIANQLSLIPEPSAVEQALAGVDPDQLTPRQALDMLYQLK 859 >gi|229606175|ref|YP_002876823.1| DNA mismatch repair protein MutS [Vibrio cholerae MJ-1236] gi|254850775|ref|ZP_05240125.1| DNA mismatch repair protein MutS [Vibrio cholerae MO10] gi|229368830|gb|ACQ59253.1| DNA mismatch repair protein MutS [Vibrio cholerae MJ-1236] gi|254846480|gb|EET24894.1| DNA mismatch repair protein MutS [Vibrio cholerae MO10] Length = 879 Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust. Identities = 313/889 (35%), Positives = 489/889 (55%), Gaps = 49/889 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E+L TPMM+QY+ +K+ NPD L+FYRMGDFYELF+DDA AS L I+LTKRG G+ Sbjct: 27 ESLSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRGASAGE 86 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 87 PIPMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTV 141 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 T++ LLS N + A+ + A +DI++G F++S + + +++ R PRE++ Sbjct: 142 TDEALLSERVDNLIAAIYHHNGRFGYATMDITSGRFQLSEPQTEEEMAAELQRTSPRELL 201 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 F E + + GN +P F+ ++ ++ + + FG +++ Sbjct: 202 FPE---DFSPVHLMASRQGNRR--RPIWEFELDTAKQQLNQQFGTRDLVGFGVEQAKLGL 256 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA I Y+K TQ P I + ++ +D+A R NLE+ L+G + +L + Sbjct: 257 CAAGCLIQYVKDTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTHNLAGGTDNTLAEV 316 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D+ T G R+ I P+ D+ +N RLD+I ++ L + +LK D+ R Sbjct: 317 LDHCATPMGSRMLKRWIHQPMRDNATLNQRLDAITE-LKETALYGELHPVLKQIGDIERI 375 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTL 435 L+RL + P+D+A +R ++ + ++ LK ELR E + +L LE+ + Sbjct: 376 LARLALRSARPRDLARLRHAMQQLPELHSVMSELKQPHLTELRTHAEPMDELCDLLERAI 435 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 ++ P RDGG + DG A LDE R L + + + L+ + + I LK+ + Sbjct: 436 K----ENPPVVIRDGGVIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGY 491 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 NN G++I+V+ + ++ ++ RQT+ N R+ EL E+++ N+ + AL Sbjct: 492 NNVHGFYIQVSRGQSHLVPP------HYVRRQTLKNAERYIIEELKQHEDKVLNSKSRAL 545 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E + +E L + ++ E L + +A +D+ LA A+ YCRP + ++ Sbjct: 546 ALEKQLWEELFDLLMPHLEQLQQLAASVAQLDVLQNLAERAENLEYCRPTLVQEAGIHIQ 605 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ + ++PFIAN +L+ ++ ++TGPNMGGKST++RQ ALI + Sbjct: 606 GGRHPVVERVM----NEPFIANPIELN-----PQRRMLIITGPNMGGKSTYMRQTALIAL 656 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MA +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V++ Sbjct: 657 MAHIGSYVPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLM 716 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA+ E+L + L ATH+ ELT+L L N L + Sbjct: 717 DEIGRGTSTYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEH 776 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 +GI F+H V G A SYG+ V LAG+P VI A L+ E L P Sbjct: 777 GDGIAFMHAVQEGAASKSYGLAVAGLAGVPKPVIKNARAKLQQLELLSSQ---------P 827 Query: 856 EIQTKESKNNLSKNDKLFVE------KIKCLNLDEMSPLTALKTLYAVK 898 K S+ +++ L E + ++ D+++P AL LY +K Sbjct: 828 AETRKPSRVDIANQLSLIPEPSAVEQALAGVDPDQLTPRQALDMLYQLK 876 >gi|239503730|ref|ZP_04663040.1| DNA mismatch repair protein [Acinetobacter baumannii AB900] Length = 881 Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust. Identities = 339/901 (37%), Positives = 502/901 (55%), Gaps = 54/901 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L + TPMM+QY+++K +L+FYRMGDFYELFF+DA LA++ LGITLT RGK G Sbjct: 9 DLSNHTPMMQQYLKVKKDYQHALLFYRMGDFYELFFEDAHLAAKLLGITLTHRGKANGNP 68 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM GVP H+A Y+ +L+K G +AICEQ+ + K V R VVR++TPGTLT Sbjct: 69 IPMAGVPYHSAEGYLARLVKAGRTVAICEQV------GEVTGKGPVERKVVRILTPGTLT 122 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH--DRLISDIMRIDPREII 198 +D LL+ S+ L+A+ + + A +D+S GIFK+ ++ ++L ++ R+ P EI+ Sbjct: 123 DDALLTSYQSSNLVALCIHQNQIGFALLDLSAGIFKVQQQDYKPEQLPIELARLMPSEIL 182 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 E + + + + L +PNV F+ + ++ + D ++++T+ FG + K Sbjct: 183 IDEDLVDPNIIEQIKKHLDCPVTKRPNVDFNLNNAQKTLCDQFSVSTLSGFGLDPLPLAK 242 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFI--DSAARSNLEILRTLSGSREQSLL 315 AAAA I Y K+TQ P I E QST FI D R NLEI+ L SL Sbjct: 243 AAAAALIHYAKETQKTALPHIRSILLE--QSTDFIALDPITRRNLEIIEPLF-EHGTSLF 299 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 + ++ T GGRL + + P+ D+ ++ RLD+I IQ +P++ +LK D+ Sbjct: 300 QLVNDCQTAMGGRLLSRTLMQPVRDTALLDARLDAIEQLIQG-YHESPVRMVLKEIGDIE 358 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKL-KKLPQ----- 429 R LSR+ +G P+D+ +R FL+N L ++ KL +L Q Sbjct: 359 RVLSRVALGSARPRDLVQLRHACAQ-----IPFLRNALAPVVQAKKSKLLGQLDQELGDF 413 Query: 430 -SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 SL + L + + ++ P RDG + +G DA LDE R +RD + + + L++K E T I Sbjct: 414 KSLHQHLMAAIVENPPVLLRDGNVIAEGYDAELDELRQIRDHAGQFLIDLEIKERERTGI 473 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 LKI +N GY+IE+T + A D +I RQT+ N R+ T EL E+++ Sbjct: 474 STLKIGYNRVSGYYIELTRAQAEQAPAD------YIRRQTLKNAERYITPELKSFEDKVL 527 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 ++ + AL E FE L + E L S IA ID+ A A+ N+ RP Sbjct: 528 SSESRALAREKALFEALLENLRENIAHLQMMSSAIAQIDVIANFAHQARLNNWARPEFTP 587 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 T ++ GRHP+VE S PF ND L + ++ ++TGPNMGGKSTF+R Sbjct: 588 ETGIKIQGGRHPVVEAL----SKAPFTPNDTFLDVQH-----RMAIITGPNMGGKSTFMR 638 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q ALI ++A GSYVPA A +G +D++F+R+GSAD+L++G+STFMVEM ET+ IL+ AT Sbjct: 639 QTALISLLAYCGSYVPARAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHAT 698 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA 788 NQS V++DE+GRGT+T DGLS+AWA + L + +C L ATH+ ELT+L S N Sbjct: 699 NQSLVLMDEVGRGTSTYDGLSLAWACVVDLTKRVKCLCLFATHYFELTELG-SEPGIDNY 757 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN-- 846 + + N +I LHKV G A S+G+QV KLAG+P VI A L+ EK + Sbjct: 758 HVTAQELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQ 817 Query: 847 ---QKDMRL-----YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 Q D+ P Q E + + ++ +K + +D ++P AL+ LY +K Sbjct: 818 TSVQSDLFATLDSEVTPSTQVIEKVIEVEVSSPA-LDLLKQIEVDNLTPRQALEQLYELK 876 Query: 899 A 899 A Sbjct: 877 A 877 >gi|312793677|ref|YP_004026600.1| DNA mismatch repair protein muts [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180817|gb|ADQ40987.1| DNA mismatch repair protein MutS [Caldicellulosiruptor kristjanssonii 177R1B] Length = 863 Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust. Identities = 321/886 (36%), Positives = 509/886 (57%), Gaps = 44/886 (4%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 ++ TPMM+QY+EIK D ++F+R+GDFYE+FF+DA++AS+ L I LT R + Sbjct: 1 MQELTPMMQQYMEIKQKVKDCILFFRLGDFYEMFFEDAIVASKELEIALTSRDCGNNEKA 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A YI KLI+ G+++AICEQ+E P AK +V+R + R++TPGT + Sbjct: 61 PMCGVPYHSATSYIAKLIEKGYKVAICEQVEDPKLAK-----GIVKREITRIITPGTFID 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD--RLISDIMRIDPREIIF 199 + + T +N++ +++ R+E+A+ ++D+STG D +L+++I + +P EI+ Sbjct: 116 ENI--STANNFICCISKDRSEFALTFVDVSTGEMYSCLLEEDLQKLLNEIGKYNPSEILI 173 Query: 200 SEKELSHAEYKSLFETLGN--VAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 S E L+E L + Q F D I + N+ +D S Sbjct: 174 SRSE------DELYEFLKKNCTSFVQMIEFVDLQKCYEVIENQINVGKIDERLILS---- 223 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLK 316 + Y+ +TQ ++ I E +Q+ L ID + NLE+ ++ SR+ SLL Sbjct: 224 --VGNLLKYLIETQKISFDYIRRYEFYRVQNYLQIDINTKRNLELTESIIQRSRKNSLLG 281 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D + T G RL + I PL D +IN RLDS+ N ++ I+++L D+ R Sbjct: 282 ILDQTKTSMGSRLLKKWIERPLIDVIEINRRLDSVEQLKSNYSILVQIEELLSRMYDIER 341 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 S+ KD+ ++ I + L L + + L+ E L L + + + Sbjct: 342 LSSKFAYKNVNAKDLLSLKRSIEV-LPALKKLLSSFSAQLLKEIYEGLDTL-EDIYALID 399 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 S +++D P ++GG ++DG + +D R++ SK ++ + K T IKNL+I +N Sbjct: 400 SSINEDAPVTLKEGGIIKDGFNEEVDRLRNISKNSKELLVQYEEKERNLTGIKNLRIGYN 459 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+IEVT S+ S++ DR+I +QT++N R+ T EL LE+ I A + Sbjct: 460 KVFGYYIEVTKSNYSLVP------DRYIRKQTLANAERYITEELKKLEDEILGADQKLIE 513 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E + F + + I Q E + + IAI+D+ + A +A + Y RP + K+ Sbjct: 514 LEYQLFCEIRDRIEAQIERIQKTASYIAILDVLCSFARIAIDNEYVRPNVCLGDRIYFKN 573 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VEK + + + FI ND +L D+ ++ ++TGPNM GKST++RQ ALIVIM Sbjct: 574 GRHPVVEKMIGRGN---FIPNDTEL----DQAENRVLIITGPNMAGKSTYMRQVALIVIM 626 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQMG +VPA AHIGIVDK+FSR+G++D+++SG+STFMVEM E A+IL AT +S +I D Sbjct: 627 AQMGCFVPADEAHIGIVDKIFSRIGASDDISSGQSTFMVEMSEVANILKNATPKSLIIFD 686 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 E+GRGT+T DGLSIAWA +EY+ + ++ + L ATH+HELT+L + + N + V + Sbjct: 687 EVGRGTSTYDGLSIAWAVLEYVADKSKIGAKTLFATHYHELTELEERIPGVKNYRVDVKE 746 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 + IIFL K++ G D SYGI V +LAG+P V+ RA +ILK E+ N+K++R Sbjct: 747 EGKNIIFLRKIVRGGCDSSYGIHVARLAGIPEEVLKRAEEILKQLEEA-DINRKNIRKLR 805 Query: 855 PEIQTK--ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 EI+ + E + S + ++KI+ L++ ++P+ AL L +K Sbjct: 806 KEIKKEFTEQIDFFSYKKEEIIDKIEKLDILNITPVQALNILSELK 851 >gi|255744237|ref|ZP_05418190.1| DNA mismatch repair protein MutS [Vibrio cholera CIRS 101] gi|262149031|ref|ZP_06028175.1| DNA mismatch repair protein MutS [Vibrio cholerae INDRE 91/1] gi|262169846|ref|ZP_06037536.1| DNA mismatch repair protein MutS [Vibrio cholerae RC27] gi|255738177|gb|EET93569.1| DNA mismatch repair protein MutS [Vibrio cholera CIRS 101] gi|262021580|gb|EEY40291.1| DNA mismatch repair protein MutS [Vibrio cholerae RC27] gi|262031176|gb|EEY49796.1| DNA mismatch repair protein MutS [Vibrio cholerae INDRE 91/1] Length = 861 Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust. Identities = 313/889 (35%), Positives = 489/889 (55%), Gaps = 49/889 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E+L TPMM+QY+ +K+ NPD L+FYRMGDFYELF+DDA AS L I+LTKRG G+ Sbjct: 9 ESLSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRGASAGE 68 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 69 PIPMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTV 123 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 T++ LLS N + A+ + A +DI++G F++S + + +++ R PRE++ Sbjct: 124 TDEALLSERVDNLIAAIYHHNGRFGYATMDITSGRFQLSEPQTEEEMAAELQRTSPRELL 183 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 F E + + GN +P F+ ++ ++ + + FG +++ Sbjct: 184 FPE---DFSPVHLMASRQGNRR--RPIWEFELDTAKQQLNQQFGTRDLVGFGVEQAKLGL 238 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA I Y+K TQ P I + ++ +D+A R NLE+ L+G + +L + Sbjct: 239 CAAGCLIQYVKDTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTHNLAGGTDNTLAEV 298 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D+ T G R+ I P+ D+ +N RLD+I ++ L + +LK D+ R Sbjct: 299 LDHCATPMGSRMLKRWIHQPMRDNATLNQRLDAITE-LKETALYGELHPVLKQIGDIERI 357 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTL 435 L+RL + P+D+A +R ++ + ++ LK ELR E + +L LE+ + Sbjct: 358 LARLALRSARPRDLARLRHAMQQLPELHSVMSELKQPHLTELRTHAEPMDELCDLLERAI 417 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 ++ P RDGG + DG A LDE R L + + + L+ + + I LK+ + Sbjct: 418 K----ENPPVVIRDGGVIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGY 473 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 NN G++I+V+ + ++ ++ RQT+ N R+ EL E+++ N+ + AL Sbjct: 474 NNVHGFYIQVSRGQSHLVPP------HYVRRQTLKNAERYIIEELKQHEDKVLNSKSRAL 527 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E + +E L + ++ E L + +A +D+ LA A+ YCRP + ++ Sbjct: 528 ALEKQLWEELFDLLMPHLEQLQQLAASVAQLDVLQNLAERAENLEYCRPTLVQEAGIHIQ 587 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ + ++PFIAN +L+ ++ ++TGPNMGGKST++RQ ALI + Sbjct: 588 GGRHPVVERVM----NEPFIANPIELNPQR-----RMLIITGPNMGGKSTYMRQTALIAL 638 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MA +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V++ Sbjct: 639 MAHIGSYVPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLM 698 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA+ E+L + L ATH+ ELT+L L N L + Sbjct: 699 DEIGRGTSTYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEH 758 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 +GI F+H V G A SYG+ V LAG+P VI A L+ E L P Sbjct: 759 GDGIAFMHAVQEGAASKSYGLAVAGLAGVPKPVIKNARAKLQQLELLSSQ---------P 809 Query: 856 EIQTKESKNNLSKNDKLFVE------KIKCLNLDEMSPLTALKTLYAVK 898 K S+ +++ L E + ++ D+++P AL LY +K Sbjct: 810 AETRKPSRVDIANQLSLIPEPSAVEQALAGVDPDQLTPRQALDMLYQLK 858 >gi|15640557|ref|NP_230186.1| DNA mismatch repair protein MutS [Vibrio cholerae O1 biovar El Tor str. N16961] gi|147675773|ref|YP_001216036.1| DNA mismatch repair protein MutS [Vibrio cholerae O395] gi|153819112|ref|ZP_01971779.1| DNA mismatch repair protein MutS [Vibrio cholerae NCTC 8457] gi|153823618|ref|ZP_01976285.1| DNA mismatch repair protein MutS [Vibrio cholerae B33] gi|227080718|ref|YP_002809269.1| DNA mismatch repair protein MutS [Vibrio cholerae M66-2] gi|229507146|ref|ZP_04396652.1| DNA mismatch repair protein MutS [Vibrio cholerae BX 330286] gi|229508991|ref|ZP_04398479.1| DNA mismatch repair protein MutS [Vibrio cholerae B33] gi|229519659|ref|ZP_04409102.1| DNA mismatch repair protein MutS [Vibrio cholerae RC9] gi|298500962|ref|ZP_07010763.1| DNA mismatch repair protein MutS [Vibrio cholerae MAK 757] gi|31076851|sp|Q9KUI6|MUTS_VIBCH RecName: Full=DNA mismatch repair protein mutS gi|172047734|sp|A5F9C4|MUTS_VIBC3 RecName: Full=DNA mismatch repair protein mutS gi|254766646|sp|C3LS25|MUTS_VIBCM RecName: Full=DNA mismatch repair protein mutS gi|9654962|gb|AAF93703.1| DNA mismatch repair protein MutS [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126510344|gb|EAZ72938.1| DNA mismatch repair protein MutS [Vibrio cholerae NCTC 8457] gi|126518867|gb|EAZ76090.1| DNA mismatch repair protein MutS [Vibrio cholerae B33] gi|146317656|gb|ABQ22195.1| DNA mismatch repair protein MutS [Vibrio cholerae O395] gi|227008606|gb|ACP04818.1| DNA mismatch repair protein MutS [Vibrio cholerae M66-2] gi|227012361|gb|ACP08571.1| DNA mismatch repair protein MutS [Vibrio cholerae O395] gi|229344348|gb|EEO09323.1| DNA mismatch repair protein MutS [Vibrio cholerae RC9] gi|229353916|gb|EEO18850.1| DNA mismatch repair protein MutS [Vibrio cholerae B33] gi|229355891|gb|EEO20811.1| DNA mismatch repair protein MutS [Vibrio cholerae BX 330286] gi|297540210|gb|EFH76270.1| DNA mismatch repair protein MutS [Vibrio cholerae MAK 757] Length = 862 Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust. Identities = 313/889 (35%), Positives = 489/889 (55%), Gaps = 49/889 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E+L TPMM+QY+ +K+ NPD L+FYRMGDFYELF+DDA AS L I+LTKRG G+ Sbjct: 10 ESLSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRGASAGE 69 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 70 PIPMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTV 124 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 T++ LLS N + A+ + A +DI++G F++S + + +++ R PRE++ Sbjct: 125 TDEALLSERVDNLIAAIYHHNGRFGYATMDITSGRFQLSEPQTEEEMAAELQRTSPRELL 184 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 F E + + GN +P F+ ++ ++ + + FG +++ Sbjct: 185 FPE---DFSPVHLMASRQGNRR--RPIWEFELDTAKQQLNQQFGTRDLVGFGVEQAKLGL 239 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA I Y+K TQ P I + ++ +D+A R NLE+ L+G + +L + Sbjct: 240 CAAGCLIQYVKDTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTHNLAGGTDNTLAEV 299 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D+ T G R+ I P+ D+ +N RLD+I ++ L + +LK D+ R Sbjct: 300 LDHCATPMGSRMLKRWIHQPMRDNATLNQRLDAITE-LKETALYGELHPVLKQIGDIERI 358 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTL 435 L+RL + P+D+A +R ++ + ++ LK ELR E + +L LE+ + Sbjct: 359 LARLALRSARPRDLARLRHAMQQLPELHSVMSELKQPHLTELRTHAEPMDELCDLLERAI 418 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 ++ P RDGG + DG A LDE R L + + + L+ + + I LK+ + Sbjct: 419 K----ENPPVVIRDGGVIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGY 474 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 NN G++I+V+ + ++ ++ RQT+ N R+ EL E+++ N+ + AL Sbjct: 475 NNVHGFYIQVSRGQSHLVPP------HYVRRQTLKNAERYIIEELKQHEDKVLNSKSRAL 528 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E + +E L + ++ E L + +A +D+ LA A+ YCRP + ++ Sbjct: 529 ALEKQLWEELFDLLMPHLEQLQQLAASVAQLDVLQNLAERAENLEYCRPTLVQEAGIHIQ 588 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ + ++PFIAN +L+ ++ ++TGPNMGGKST++RQ ALI + Sbjct: 589 GGRHPVVERVM----NEPFIANPIELNPQR-----RMLIITGPNMGGKSTYMRQTALIAL 639 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MA +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V++ Sbjct: 640 MAHIGSYVPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLM 699 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA+ E+L + L ATH+ ELT+L L N L + Sbjct: 700 DEIGRGTSTYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEH 759 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 +GI F+H V G A SYG+ V LAG+P VI A L+ E L P Sbjct: 760 GDGIAFMHAVQEGAASKSYGLAVAGLAGVPKPVIKNARAKLQQLELLSSQ---------P 810 Query: 856 EIQTKESKNNLSKNDKLFVE------KIKCLNLDEMSPLTALKTLYAVK 898 K S+ +++ L E + ++ D+++P AL LY +K Sbjct: 811 AETRKPSRVDIANQLSLIPEPSAVEQALAGVDPDQLTPRQALDMLYQLK 859 >gi|153802561|ref|ZP_01957147.1| DNA mismatch repair protein MutS [Vibrio cholerae MZO-3] gi|124121924|gb|EAY40667.1| DNA mismatch repair protein MutS [Vibrio cholerae MZO-3] Length = 862 Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust. Identities = 314/889 (35%), Positives = 487/889 (54%), Gaps = 49/889 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E+L TPMM+QY+ +K+ NPD L+FYRMGDFYELF+DDA AS L I+LTKRG G+ Sbjct: 10 ESLSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRGASAGE 69 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 70 PIPMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTV 124 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 T++ LLS N + A+ + A +DI++G F++S + + +++ R PRE++ Sbjct: 125 TDEALLSERIDNLIAAIYHHNGRFGYATMDITSGRFQLSEPQTEEEMAAELQRTSPRELL 184 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 F E + + GN +P F+ ++ ++ + + FG +Q+ Sbjct: 185 FPE---DFSPVHLMASRQGNRR--RPIWEFELDTAKQQLNQQFGTRDLVGFGVEQAQLGL 239 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA I Y+K TQ P I + ++ +D+A R NLE+ L+G + +L + Sbjct: 240 CAAGCLIQYVKDTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTHNLAGGTDNTLAEV 299 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D+ T G R+ I P+ D+ +N RLD+I ++ L + +LK D+ R Sbjct: 300 LDHCATPMGSRMLKRWIHQPMRDNATLNQRLDAITE-LKETALYGELHPVLKQIGDIERI 358 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTL 435 L+RL + P+D+A +R ++ + ++ LK ELR E + L LE+ + Sbjct: 359 LARLALRSARPRDLARLRHAMQQLPELHSVMSELKQPHLTELRTHAEPMDGLCDLLERAI 418 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 ++ P RDGG + DG A LDE R L + + + L+ + + I LK+ + Sbjct: 419 K----ENPPVVIRDGGVIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGY 474 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 NN G++I+V+ + ++ ++ RQT+ N R+ EL E+++ N+ + AL Sbjct: 475 NNVHGFYIQVSRGQSHLVPP------HYVRRQTLKNAERYIIEELKQHEDKVLNSKSRAL 528 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E + +E L + ++ E L + +A +D LA A+ YCRP + ++ Sbjct: 529 ALEKQLWEELFDLLLPHLEQLQQLAASVAQLDALQNLAERAENLEYCRPTLVQEAGIHIQ 588 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ + ++PFIAN +L+ ++ ++TGPNMGGKST++RQ ALI + Sbjct: 589 GGRHPVVERVM----NEPFIANPIELNPQR-----RMLIITGPNMGGKSTYMRQTALIAL 639 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MA +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V++ Sbjct: 640 MAHIGSYVPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLM 699 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA+ E+L + L ATH+ ELT+L L N L + Sbjct: 700 DEIGRGTSTYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEH 759 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 +GI F+H V G A SYG+ V LAG+P VI A L+ E L P Sbjct: 760 GDGIAFMHAVQEGAASKSYGLAVAGLAGVPKPVIKNARAKLQQLELLSSQ---------P 810 Query: 856 EIQTKESKNNLSKNDKLFVE------KIKCLNLDEMSPLTALKTLYAVK 898 K S+ +++ L E + ++ D+++P AL LY +K Sbjct: 811 AETRKPSRVDIANQLSLIPEPSAVEQALAGVDPDQLTPRQALDMLYQLK 859 >gi|126179893|ref|YP_001047858.1| DNA mismatch repair protein MutS [Methanoculleus marisnigri JR1] gi|125862687|gb|ABN57876.1| DNA mismatch repair protein MutS [Methanoculleus marisnigri JR1] Length = 872 Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust. Identities = 319/879 (36%), Positives = 482/879 (54%), Gaps = 35/879 (3%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD-IPMC 84 TP MRQY K+ PD+++F+RMGDFYE F +DA + +R L ITLT RG+ D +P+ Sbjct: 6 TPAMRQYYSAKARYPDAVLFFRMGDFYETFGEDAGVVARELDITLTARGRDKNGDRMPLA 65 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H A YI +L+ G+++ IC+Q+E P AK +V+R+V R++TPGTL + + Sbjct: 66 GVPHHAAEGYIARLVNKGYKVVICDQVEDPKTAK-----GIVKRDVTRVITPGTLIDSSM 120 Query: 145 LSPTDSNYLMAVARIRTE-WAIAWIDISTGIFKISTSNHDR----LISDIMRIDPREIIF 199 L+ ++YLMAVA R E + +A++D+STG F +S+ + R ++S+++R P E I Sbjct: 121 LASAGAHYLMAVAPDRKETFGLAFLDVSTGEFFVSSGSGGREYAEIVSEVVRYRPTEAIV 180 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 E + E+LG + FD + R+ + TT+D +G A Sbjct: 181 PES--FGDTLPARLESLGVPVSRYRDDAFDPDAAYERLCGQFGTTTLDGYGCAGMPGAVA 238 Query: 260 AAAA-ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS-LLKT 317 AA A + Y ++TQ + I + +D+ NLEI + G + S LL Sbjct: 239 AAGAALCYAQETQQSSLSHISGLSTRVPSGNMALDAITLRNLEITAGIRGEGDGSTLLSA 298 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D + T G R + +PL I RLD++ +F + + ++ L D R Sbjct: 299 LDVTETSMGSRTMRSFLIAPLLGKDAIEARLDAVEWFFDHALERQALRATLGDFADTERI 358 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 R+ G P+D+A +RD + + ++ LF D P + A++ + ++ + Sbjct: 359 AGRIAYGNAGPRDLATLRDSLCAIPDVKTLF-PTDAPVRVHDALDAMSDH-AAVTDLIGR 416 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + D+ P R GG +R+G +A LDE R L K IA Q + E T IK+LK+ +N Sbjct: 417 AIVDEPPATARAGGMIREGYNAKLDELRHLATSGKDWIAEFQQQERERTGIKSLKVGYNR 476 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IEVT + ++ + E RQT +N R+T +L + E I A + Sbjct: 477 VFGYYIEVTRPNLHLVPPEYE------RRQTTANGERYTIPDLREKEAMIATAEERLTAL 530 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E E + L ++ + + ++ + ++D+ ALA +A Y RP I+ S +++DG Sbjct: 531 EAEIYTELVRTLVAEVAGIQATARAVGLLDVYSALAEVAARYGYTRPAIEESGRVVIRDG 590 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ L PF+ ND +L D + ++ ++TG NM GKST++R AL IMA Sbjct: 591 RHPVVERHLPV----PFVPNDTEL----DSAADQIMIITGANMAGKSTYMRAVALCCIMA 642 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+GS+VPA +A IGIVD++F+RVG+ D+LASG+STFMVEM+E A+ILN AT S VILDE Sbjct: 643 QVGSFVPARHATIGIVDRVFTRVGAFDDLASGQSTFMVEMLELANILNNATAGSLVILDE 702 Query: 738 IGRGTATLDGLSIAWATIEYLH--ETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 IGRGT+TLDG +IA A +E+LH R L ATHFH+L DL +LKR N V D+ Sbjct: 703 IGRGTSTLDGCAIARAVVEFLHGKAVAGPRTLFATHFHDLIDLEGTLKRVKNFHFAVKDT 762 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 ++FL K+IPG D SYG+ V LAG+P V RA +ILK Y Sbjct: 763 GTDVVFLRKIIPGATDRSYGVHVAHLAGIPKKVTDRAMEILKEASAREFSGGPRAPRYTQ 822 Query: 856 EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 + + + +N V ++K LN +EM+P+ AL TL Sbjct: 823 MLLVDPGERAVQENPA--VRELKDLNPNEMTPIEALTTL 859 >gi|229512805|ref|ZP_04402272.1| DNA mismatch repair protein MutS [Vibrio cholerae TMA 21] gi|229350054|gb|EEO15007.1| DNA mismatch repair protein MutS [Vibrio cholerae TMA 21] Length = 880 Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust. Identities = 313/889 (35%), Positives = 489/889 (55%), Gaps = 49/889 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E+L TPMM+QY+ +K+ NPD L+FYRMGDFYELF+DDA AS L I+LTKRG G+ Sbjct: 28 ESLSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRGASAGE 87 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 88 PIPMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTV 142 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 T++ LLS N + A+ + A +DI++G F++S + + +++ R PRE++ Sbjct: 143 TDEALLSERVDNLIAAIYHHNGRFGYATMDITSGRFQLSEPQTEEEMAAELQRTSPRELL 202 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 F E + + GN +P F+ ++ ++ + + FG +++ Sbjct: 203 FPE---DFSPVHLMASRQGNRR--RPIWEFELDTAKQQLNQQFGTRDLVGFGVEQAKLGL 257 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA I Y+K TQ P I + ++ +D+A R NLE+ L+G + +L + Sbjct: 258 CAAGCLIQYVKDTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTHNLAGGTDNTLAEV 317 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D+ T G R+ I P+ D+ +N RLD+I ++ L + +LK D+ R Sbjct: 318 LDHCATPMGSRMLKRWIHQPMRDNATLNQRLDAITE-LKETALYGELHPVLKQIGDIERI 376 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTL 435 L+RL + P+D+A +R ++ + ++ LK ELR E + +L LE+ + Sbjct: 377 LARLALRSARPRDLARLRHAMQQLPELHSVMSELKQPHLTELRTHAEPMNELCDLLERAI 436 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 ++ P RDGG + DG A LDE R L + + + L+ + + I LK+ + Sbjct: 437 K----ENPPVVIRDGGVIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGY 492 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 NN G++I+V+ + ++ ++ RQT+ N R+ EL E+++ N+ + AL Sbjct: 493 NNVHGFYIQVSRGQSHLVPP------HYVRRQTLKNAERYIIEELKQHEDKVLNSKSRAL 546 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E + +E L + ++ E L + +A +D+ LA A+ YCRP + ++ Sbjct: 547 ALEKQLWEELFDLLLPHLEQLQQLAASVAQLDVLQNLAERAENLEYCRPTLVQEAGIHIQ 606 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ + ++PFIAN +L+ ++ ++TGPNMGGKST++RQ ALI + Sbjct: 607 GGRHPVVERVM----NEPFIANPIELN-----PQRRMLIITGPNMGGKSTYMRQTALIAL 657 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MA +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V++ Sbjct: 658 MAHIGSYVPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLM 717 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA+ E+L + L ATH+ ELT+L L N L + Sbjct: 718 DEIGRGTSTYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEH 777 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 +GI F+H V G A SYG+ V LAG+P VI A L+ E L P Sbjct: 778 GDGIAFMHAVQEGAASKSYGLAVAGLAGVPKPVIKNARAKLQQLELLSSQ---------P 828 Query: 856 EIQTKESKNNLSKNDKLFVE------KIKCLNLDEMSPLTALKTLYAVK 898 K S+ +++ L E + ++ D+++P AL LY +K Sbjct: 829 AETRKPSRVDIANQLSLIPEPSAIEQALAGVDPDQLTPRQALDMLYQLK 877 >gi|146329025|ref|YP_001210174.1| DNA mismatch repair protein MutS [Dichelobacter nodosus VCS1703A] gi|189030715|sp|A5EX62|MUTS_DICNV RecName: Full=DNA mismatch repair protein mutS gi|146232495|gb|ABQ13473.1| DNA mismatch repair protein MutS [Dichelobacter nodosus VCS1703A] Length = 861 Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust. Identities = 324/877 (36%), Positives = 476/877 (54%), Gaps = 39/877 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP M+QY+ IK PD L+FYRMGDFYELFFDDA A L IT+T RGK GK IPM G Sbjct: 9 TPAMQQYLTIKEDFPDLLLFYRMGDFYELFFDDAKKAGALLNITVTARGKIRGKPIPMAG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H +Y+ KL+K G ICEQ+ K LV R V R++TPGTLT++ LL Sbjct: 69 VPAHALENYLAKLVKQGMSAVICEQV-------GEVGKGLVERAVTRIITPGTLTDENLL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTS-NHDRLISDIMRIDPREIIFSEKEL 204 + L+++ + + A+ DI+ G F+++ N L S+I R+ P EI+ E Sbjct: 122 DEARDSILLSLFCFQNNYFFAYADITRGDFQLTMGLNEQELQSEIERLRPAEILMPET-- 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAA 263 A + L QP+ +FD S I +YY TT+D FG + +AA Sbjct: 180 --ANVPAFITALK--PHRQPDWYFDSDSSYRLICEYYQTTTIDGFGIAPDDPALSAAGCL 235 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 + Y+ T + P + +++ L +D+ R NLE+ TL+G + SL+ TI+ T Sbjct: 236 LQYLHDTHKYHLPPLKPLQKQHDHQYLLLDATTRRNLELEYTLNGESKHSLIATINRCST 295 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 AG R I PL I R +++ + + L + I K L+++ D+ R +R+ + Sbjct: 296 AAGVRTLKRWINQPLIQHEYILERQEAVTALLTHADL-DEIAKTLRATADIERITTRIAL 354 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEE--LRGAVEKLKKLPQSLEKTLSSMLSD 441 +P+++A +RD + + +N L+ L A + L PQ L L L + Sbjct: 355 QTAKPRELAQLRDTLMQ-LPAINALLQTSAAHSPLLAAATQALMHCPQ-LGDLLMKALVE 412 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 P ++GG G LD L D S +++ ++ + +T + LKI N GY Sbjct: 413 APPLTLKEGGIFAAGYLPELDALHELTDHSAQLLEKMEQEEKAQTGLNTLKIGFNRVHGY 472 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +I++ S A+ + +I RQT+ N R+ T L LE R+ NA + AL +E ++ Sbjct: 473 YIDIPRSQAA------NAPAHWIRRQTLKNSERYVTESLKTLEERLLNAQDEALALEKQA 526 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 + L + +Q + L + +A D+ A LAKE +YCRP N + GRHP+ Sbjct: 527 YTELLITLDKQRDDLYRLATALAESDVLTCFARLAKEHHYCRPQFSNQIEIQITAGRHPV 586 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE Q S++PFIAND L +L +LTGPNMGGKST++RQ ALIVI+A GS Sbjct: 587 VE----QLSAQPFIANDLVL-----HQKRQLLILTGPNMGGKSTYMRQTALIVILALAGS 637 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 YVPA A IG ++++F+R+G++D+LA GRSTFMVEM ETA+ILN A S VI+DEIGRG Sbjct: 638 YVPAKEARIGRINRIFTRIGASDDLAGGRSTFMVEMTETANILNNADEHSLVIMDEIGRG 697 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 T+T DGLS+AWA ++L + NR L ATH+ ELT L + + N L ++ E I+F Sbjct: 698 TSTFDGLSLAWAVADHLLQKNRALTLFATHYFELTALVERHQHGANIHLSAAEDQEHIVF 757 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKE 861 L+ + G SYG+ V KLAG+P VI A L+ E+ + R + + + Sbjct: 758 LYHIEEGATSKSYGLHVAKLAGVPQAVIHNANAKLRQLEE----KRVPQRAHQALLPIES 813 Query: 862 SKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 K +LS K +++I+ +N DE+SP A + LY +K Sbjct: 814 QKPSLSPQIKNILQQIQEINPDELSPKAAHEWLYQLK 850 >gi|121590678|ref|ZP_01678011.1| DNA mismatch repair protein MutS [Vibrio cholerae 2740-80] gi|121547464|gb|EAX57572.1| DNA mismatch repair protein MutS [Vibrio cholerae 2740-80] Length = 862 Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust. Identities = 311/889 (34%), Positives = 489/889 (55%), Gaps = 49/889 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E+L TPMM+QY+ +K+ NPD L+FYRMGDFYELF+DDA AS L I+LTKRG G+ Sbjct: 10 ESLSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRGASAGE 69 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 70 PIPMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTV 124 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 T++ LLS N + A+ + A +DI++G F++S + + +++ R PRE++ Sbjct: 125 TDEALLSERVDNLIAAIYHHNGRFGYATMDITSGRFQLSEPQTEEEMAAELQRTSPRELL 184 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 F E + + GN +P F+ ++ ++ + + FG +++ Sbjct: 185 FPE---DFSPVHLMASRQGNRR--RPIWEFELDTAKQQLNQQFGTRDLVGFGVEQAKLGL 239 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA I Y+K TQ P I + ++ +D+A R NLE+ L+G + +L + Sbjct: 240 CAAGCLIQYVKDTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTHNLAGGTDNTLAEV 299 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D+ T G R+ I P+ D+ +N RLD+I ++ L + +LK D+ R Sbjct: 300 LDHCATPMGSRMLKRWIHQPMRDNATLNQRLDAITE-LKETALYGELHPVLKQIGDIERI 358 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEKLKKLPQSLEKTL 435 L+RL + P+D+A +R ++ + +L + P +LR + + +L LE+ + Sbjct: 359 LARLALRSARPRDLARLRHAMQQLPELHSLLTELGQPHLAQLRTHAQPMDELCDLLERAI 418 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 ++ P RDGG + DG A LDE R L + + + L+ + + I LK+ + Sbjct: 419 K----ENPPVVIRDGGVIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGY 474 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 NN G++I+V+ + ++ ++ RQT+ N R+ EL E+++ N+ + AL Sbjct: 475 NNVHGFYIQVSRGQSHLVPP------HYVRRQTLKNAERYIIEELKQHEDKVLNSKSRAL 528 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E + +E L + ++ E L + +A +D+ LA A+ YCRP + ++ Sbjct: 529 ALEKQLWEELFDLLMPHLEQLQQLAASVAQLDVLQNLAERAENLEYCRPTLVQEAGIHIQ 588 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ + ++PFIAN +L+ ++ ++TGPNMGGKST++RQ ALI + Sbjct: 589 GGRHPVVERVM----NEPFIANPIELNPQR-----RMLIITGPNMGGKSTYMRQTALIAL 639 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MA +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V++ Sbjct: 640 MAHIGSYVPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLM 699 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA+ E+L + L ATH+ ELT+L L N L + Sbjct: 700 DEIGRGTSTYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEH 759 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 +GI F+H V G A SYG+ V LAG+P VI A L+ E L P Sbjct: 760 GDGIAFMHAVQEGAASKSYGLAVAGLAGVPKPVIKNARAKLQQLELLSSQ---------P 810 Query: 856 EIQTKESKNNLSKNDKLFVE------KIKCLNLDEMSPLTALKTLYAVK 898 K S+ +++ L E + ++ D+++P AL LY +K Sbjct: 811 AETRKPSRVDIANQLSLIPEPSAVEQALAGVDPDQLTPRQALDMLYQLK 859 >gi|327483356|gb|AEA77763.1| DNA mismatch repair protein MutS [Vibrio cholerae LMA3894-4] Length = 861 Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust. Identities = 313/889 (35%), Positives = 488/889 (54%), Gaps = 49/889 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E+L TPMM+QY+ +K+ NPD L+FYRMGDFYELF+DDA AS L I+LTKRG G+ Sbjct: 9 ESLSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRGASAGE 68 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 69 PIPMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTV 123 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 T++ LLS N + A+ + A +DI++G F++S + + +++ R PRE++ Sbjct: 124 TDEALLSERVDNLIAAIYHHNGRFGYATMDITSGRFQLSEPQTEEEMAAELQRTSPRELL 183 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 F E + + GN +P F+ ++ ++ + + FG +++ Sbjct: 184 FPE---DFSPVHLMASRQGNRR--RPIWEFELDTAKQQLNQQFGTRDLVGFGVEQAKLGL 238 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA I Y+K TQ P I + ++ +D+A R NLE+ L+G + +L + Sbjct: 239 CAAGCLIQYVKDTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTHNLAGGTDNTLAEV 298 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D+ T G R+ I P+ D+ +N RLD+I ++ L + +LK D+ R Sbjct: 299 LDHCATPMGSRMLKRWIHQPMRDNATLNQRLDAITE-LKETALYGELHPVLKQIGDIERI 357 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTL 435 L+RL + P+D+A +R ++ + ++ LK ELR E + L LE+ + Sbjct: 358 LARLALRSARPRDLARLRHAMQQLPELHSVMSELKQPHLTELRTHAEPMDGLCDLLERAI 417 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 ++ P RDGG + DG A LDE R L + + + L+ + + I LK+ + Sbjct: 418 K----ENPPVVIRDGGVIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGY 473 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 NN G++I+V+ + ++ ++ RQT+ N R+ EL E+++ N+ + AL Sbjct: 474 NNVHGFYIQVSRGQSHLVPP------HYVRRQTLKNAERYIIEELKQHEDKVLNSKSRAL 527 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E + +E L + ++ E L + +A +D+ LA A+ YCRP + ++ Sbjct: 528 ALEKQLWEELFDLLLPHLEQLQQLAASVAQLDVLQNLAERAENLEYCRPTLVQEAGIHIQ 587 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ + ++PFIAN +L+ ++ ++TGPNMGGKST++RQ ALI + Sbjct: 588 GGRHPVVERVM----NEPFIANPIELNPQR-----RMLIITGPNMGGKSTYMRQTALIAL 638 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MA +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V++ Sbjct: 639 MAHIGSYVPAENARIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLM 698 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA+ E+L + L ATH+ ELT+L L N L + Sbjct: 699 DEIGRGTSTYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEH 758 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 +GI F+H V G A SYG+ V LAG+P VI A L+ E L P Sbjct: 759 GDGIAFMHAVQEGAASKSYGLAVAGLAGVPKPVIKNARAKLQQLELLSSQ---------P 809 Query: 856 EIQTKESKNNLSKNDKLFVE------KIKCLNLDEMSPLTALKTLYAVK 898 K S+ +++ L E + ++ D+++P AL LY +K Sbjct: 810 AETRKPSRVDIANQLSLIPEPSAVEQALAGVDPDQLTPRQALDMLYQLK 858 >gi|262401760|ref|ZP_06078326.1| DNA mismatch repair protein MutS [Vibrio sp. RC586] gi|262352177|gb|EEZ01307.1| DNA mismatch repair protein MutS [Vibrio sp. RC586] Length = 861 Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust. Identities = 312/883 (35%), Positives = 488/883 (55%), Gaps = 37/883 (4%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E+L TPMM+QY+ +K+ NPD L+FYRMGDFYELF+DDA AS L I+LTKRG G+ Sbjct: 9 ESLSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRGASAGE 68 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 69 PIPMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTV 123 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 T++ LLS N + A+ + A +DI++G F++S + + +++ R PRE++ Sbjct: 124 TDEALLSERVDNLIAAIYHHNGHFGYATMDITSGRFQLSEPQTEEEMAAELQRTSPRELL 183 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 F E A + GN +P F+ + ++ ++ ++ + FG +Q+ Sbjct: 184 FPE---DFAPVHLMANRQGNRR--RPIWEFELATAKQQLNQQFSTRDLVGFGVEQAQLGL 238 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA I Y+K TQ P I ++ +D+A R NLE+ L+G + +L Sbjct: 239 CAAGCLIQYVKDTQRTALPHIRSLTWVRQDQSVILDAATRRNLELTHNLAGGTDNTLADV 298 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D+ T G R+ + P+ D+ +N RLD+I ++ L + +LK D+ R Sbjct: 299 LDHCATPMGSRMLKRWVHQPMRDNATLNQRLDAITE-LKETTLYGELHPVLKQIGDIERI 357 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEKLKKLPQSLEKTL 435 L+RL + P+D+A +R ++ + ++ + + P ELR + + +L LE+ + Sbjct: 358 LARLALRSARPRDLARLRHAMQQLPELHSVMSELEQPHLTELRTHAQPMDELCDLLERAI 417 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 ++ P RDGG + DG LDE R L + + + L+ + + I LK+ + Sbjct: 418 K----ENPPVVIRDGGVIADGYSTELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGY 473 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 NN G++I+V+ + ++ ++ RQT+ N R+ EL E+++ N+ + AL Sbjct: 474 NNVHGFYIQVSRGQSHLVPP------HYVRRQTLKNAERYIIEELKQHEDKVLNSKSRAL 527 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E + +E L + ++ E L + IA +D+ LA A+ YCRP + + Sbjct: 528 AVEKQLWEELFDLLLPHLEQLQQLAASIAQLDVLQNLAERAESLEYCRPTLVKEAGIRIL 587 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ + ++PFIAN +L+ ++ ++TGPNMGGKST++RQ ALI + Sbjct: 588 GGRHPVVEQVM----NEPFIANPIELNPQR-----RMLIITGPNMGGKSTYMRQTALIAL 638 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MA +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT+ S V++ Sbjct: 639 MAHIGSYVPAESAQIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATSHSLVLM 698 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA+ E+L L ATH+ ELT+L SL N L + Sbjct: 699 DEIGRGTSTYDGLSLAWASAEWLAREIGALTLFATHYFELTELPNSLPHLANVHLDAVEH 758 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 + I F+H V G A SYG+ V LAG+P VI A L+ E L + + Sbjct: 759 GDSIAFMHAVQEGAASKSYGLAVAGLAGVPKPVIKNARAKLQQLELLSSQPAETRKPNRV 818 Query: 856 EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +I + S L + + + L+ DE++P AL LY +K Sbjct: 819 DIANQLS---LIPEPSVVEQALAELDPDELTPRQALDALYRLK 858 >gi|254226841|ref|ZP_04920412.1| DNA mismatch repair protein MutS [Vibrio cholerae V51] gi|125620638|gb|EAZ49001.1| DNA mismatch repair protein MutS [Vibrio cholerae V51] Length = 862 Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust. Identities = 313/889 (35%), Positives = 488/889 (54%), Gaps = 49/889 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E+L TPMM+QY+ +K+ NPD L+FYRMGDFYELF+DDA AS L I+LTKRG G+ Sbjct: 10 ESLSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRGASAGE 69 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 70 PIPMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTV 124 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 T++ LLS N + A+ + A +DI++G F++S + + +++ R PRE++ Sbjct: 125 TDEALLSERVDNLIAAIYHHNGRFGYATMDITSGRFQLSEPQTEEEMAAELQRTSPRELL 184 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 F E + + GN +P F+ ++ ++ + + FG +++ Sbjct: 185 FPE---DFSPVHLMASRQGNRR--RPIWEFELDTAKQQLNQQFGTRDLVGFGVEQAKLGL 239 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA I Y+K TQ P I + ++ +D+A R NLE+ L+G + +L + Sbjct: 240 CAAGCLIQYVKDTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTHNLAGGTDNTLAEV 299 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D+ T G R+ I P+ D+ +N RLD+I ++ L + +LK D+ R Sbjct: 300 LDHCATPMGSRMLKRWIHQPMRDNATLNQRLDAITE-LKETALYGELHPVLKQIGDIERI 358 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTL 435 L+RL + P+D+A +R ++ + ++ LK ELR E + L LE+ + Sbjct: 359 LARLALRSARPRDLARLRHAMQQLPELHSVMSELKQPHLTELRTHAEPMDGLCDLLERAI 418 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 ++ P RDGG + DG A LDE R L + + + L+ + + I LK+ + Sbjct: 419 K----ENPPVVIRDGGVIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGY 474 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 NN G++I+V+ + ++ ++ RQT+ N R+ EL E+++ N+ + AL Sbjct: 475 NNVHGFYIQVSRGQSHLVPP------HYVRRQTLKNAERYIIEELKQHEDKVLNSKSRAL 528 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E + +E L + ++ E L + +A +D+ LA A+ YCRP + ++ Sbjct: 529 ALEKQLWEELFDLLLPHLEQLQQLAASVAQLDVLQNLAERAENLEYCRPTLVQEAGIHIQ 588 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ + ++PFIAN +L+ ++ ++TGPNMGGKST++RQ ALI + Sbjct: 589 GGRHPVVERVM----NEPFIANPIELNPQR-----RMLIITGPNMGGKSTYMRQTALIAL 639 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MA +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V++ Sbjct: 640 MAHIGSYVPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLM 699 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA+ E+L + L ATH+ ELT+L L N L + Sbjct: 700 DEIGRGTSTYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEH 759 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 +GI F+H V G A SYG+ V LAG+P VI A L+ E L P Sbjct: 760 GDGIAFMHAVQEGAASKSYGLAVAGLAGVPKPVIKNARAKLQQLELLSSQ---------P 810 Query: 856 EIQTKESKNNLSKNDKLFVE------KIKCLNLDEMSPLTALKTLYAVK 898 K S+ +++ L E + ++ D+++P AL LY +K Sbjct: 811 AETRKPSRVDIANQLSLIPEPSAIEQALAGVDPDQLTPRQALDMLYQLK 859 >gi|169796507|ref|YP_001714300.1| DNA mismatch repair protein MutS [Acinetobacter baumannii AYE] gi|184157560|ref|YP_001845899.1| DNA mismatch repair protein MutS [Acinetobacter baumannii ACICU] gi|213156380|ref|YP_002318800.1| DNA mismatch repair protein MutS [Acinetobacter baumannii AB0057] gi|215483970|ref|YP_002326195.1| DNA mismatch repair protein MutS [Acinetobacter baumannii AB307-0294] gi|301347835|ref|ZP_07228576.1| DNA mismatch repair protein MutS [Acinetobacter baumannii AB056] gi|301511666|ref|ZP_07236903.1| DNA mismatch repair protein MutS [Acinetobacter baumannii AB058] gi|301597647|ref|ZP_07242655.1| DNA mismatch repair protein MutS [Acinetobacter baumannii AB059] gi|332855545|ref|ZP_08435931.1| DNA mismatch repair protein MutS [Acinetobacter baumannii 6013150] gi|332870218|ref|ZP_08439113.1| DNA mismatch repair protein MutS [Acinetobacter baumannii 6013113] gi|332874294|ref|ZP_08442213.1| DNA mismatch repair protein MutS [Acinetobacter baumannii 6014059] gi|226723048|sp|B7GW85|MUTS_ACIB3 RecName: Full=DNA mismatch repair protein mutS gi|226723049|sp|B7IBV9|MUTS_ACIB5 RecName: Full=DNA mismatch repair protein mutS gi|238688089|sp|B0VAU7|MUTS_ACIBY RecName: Full=DNA mismatch repair protein mutS gi|238690992|sp|B2HX50|MUTS_ACIBC RecName: Full=DNA mismatch repair protein mutS gi|169149434|emb|CAM87320.1| methyl-directed mismatch repair, recognize exocyclic adducts of guanosine [Acinetobacter baumannii AYE] gi|183209154|gb|ACC56552.1| Mismatch repair ATPase (MutS family) [Acinetobacter baumannii ACICU] gi|213055540|gb|ACJ40442.1| DNA mismatch repair protein MutS [Acinetobacter baumannii AB0057] gi|213985940|gb|ACJ56239.1| DNA mismatch repair protein MutS [Acinetobacter baumannii AB307-0294] gi|322507874|gb|ADX03328.1| mutS [Acinetobacter baumannii 1656-2] gi|323517471|gb|ADX91852.1| DNA mismatch repair protein MutS [Acinetobacter baumannii TCDC-AB0715] gi|332727402|gb|EGJ58834.1| DNA mismatch repair protein MutS [Acinetobacter baumannii 6013150] gi|332732385|gb|EGJ63642.1| DNA mismatch repair protein MutS [Acinetobacter baumannii 6013113] gi|332737519|gb|EGJ68427.1| DNA mismatch repair protein MutS [Acinetobacter baumannii 6014059] Length = 881 Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust. Identities = 334/899 (37%), Positives = 499/899 (55%), Gaps = 50/899 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L + TPMM+QY+++K +L+FYRMGDFYELFF+DA LA++ LGITLT RGK G Sbjct: 9 DLSNHTPMMQQYLKVKKDYQHALLFYRMGDFYELFFEDAHLAAKLLGITLTHRGKANGNP 68 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM GVP H+A Y+ +L+K G +AICEQ+ + K V R VVR++TPGTLT Sbjct: 69 IPMAGVPYHSAEGYLARLVKAGRTVAICEQV------GEVTGKGPVERKVVRILTPGTLT 122 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH--DRLISDIMRIDPREII 198 +D LL+ S+ L+A+ + + A +D+S GIFK+ ++ ++L ++ R+ P EI+ Sbjct: 123 DDALLTSYQSSNLVALCIHQNQIGFALLDLSAGIFKVQQQDYKPEQLPIELARLMPSEIL 182 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 E + + + + L +PNV F+ + ++ + D ++++T+ FG + K Sbjct: 183 IDEDLVDPNIIEQIKKHLDCPVTKRPNVDFNLNNAQKTLCDQFSVSTLSGFGLDPLPLAK 242 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AAAA I Y K+TQ P I E + +D R NLEI+ L SL + Sbjct: 243 AAAAALIHYAKETQKTALPHIRSILLEQSSDFIALDPITRRNLEIIEPLF-EHGTSLFQL 301 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 ++ T GGRL + + P+ D+ ++ RLD+I IQ +P++ +LK D+ R Sbjct: 302 VNDCQTAMGGRLLSRTLMQPVRDTALLDARLDAIEQLIQG-YHESPVRLVLKEIGDIERV 360 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKL-KKLPQ------S 430 LSR+ +G P+D+ +R FL+N L ++ KL +L Q S Sbjct: 361 LSRVALGSARPRDLVQLRHACAQ-----IPFLRNALAPVVQAKKSKLLGQLDQELGDFKS 415 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L + L + + ++ P RDG + +G DA LDE R +RD + + + L++K E T I Sbjct: 416 LHQHLMAAIVENPPVLLRDGNVIAEGYDAELDELRQIRDHAGQFLIDLEIKERERTGIST 475 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LKI +N GY+IE+T + A D +I RQT+ N R+ T EL E+++ ++ Sbjct: 476 LKIGYNRVSGYYIELTRAQAEQAPAD------YIRRQTLKNAERYITPELKSFEDKVLSS 529 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 + AL E FE L + E L S IA ID+ A A+ N+ RP T Sbjct: 530 ESRALAREKALFEALLENLRENIAHLQMMSSAIAQIDVIANFAHQARLNNWARPEFTPET 589 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 ++ GRHP+VE S PF ND L + ++ ++TGPNMGGKSTF+RQ Sbjct: 590 GIKIQGGRHPVVEAL----SKAPFTPNDTFLDVQH-----RMAIITGPNMGGKSTFMRQT 640 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI ++A GSYVPA A +G +D++F+R+GSAD+L++G+STFMVEM ET+ IL+ ATNQ Sbjct: 641 ALISLLAYCGSYVPARAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQ 700 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V++DE+GRGT+T DGLS+AWA + L + +C L ATH+ ELT+L S N + Sbjct: 701 SLVLMDEVGRGTSTYDGLSLAWACVVDLTKRVKCLCLFATHYFELTELG-SEPGIDNYHV 759 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN---- 846 + N +I LHKV G A S+G+QV KLAG+P VI A L+ EK + Sbjct: 760 TAQELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQTS 819 Query: 847 -QKDMRL-----YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 Q D+ P Q E + + ++ +K + +D ++P AL+ LY +KA Sbjct: 820 VQSDLFATLDSEVTPSTQVIEKVIEVEVSSPA-LDLLKQIEVDNLTPRQALEQLYELKA 877 >gi|166031820|ref|ZP_02234649.1| hypothetical protein DORFOR_01521 [Dorea formicigenerans ATCC 27755] gi|166028273|gb|EDR47030.1| hypothetical protein DORFOR_01521 [Dorea formicigenerans ATCC 27755] Length = 874 Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust. Identities = 327/891 (36%), Positives = 517/891 (58%), Gaps = 44/891 (4%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY++ K D ++FYR+GDFYE+FFDDAL+AS+ L ITLT + L + PMCGVP Sbjct: 1 MMQQYMKTKEEYKDCILFYRLGDFYEMFFDDALVASKELDITLTGKNCGLEERAPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H + Y+ +L+ G+++AICEQ+E P AK +V+R VVR+ TPGT + Q L Sbjct: 61 FHAVDGYLNRLVSKGYKVAICEQMEDPATAK-----GIVKREVVRIATPGTNLDMQALDE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSN-HDRLISDIMRIDPREIIFSEKE-LS 205 T +NY+M V + + ++ D++TG + ++ N ++L +I ++ P E+I +E +S Sbjct: 116 TKNNYIMCVVYMEDRFGLSVADVTTGDYFVTEINTEEKLFDEIYKLMPSELICNEAFFMS 175 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAI 264 + L LG + +FD +I + + +++ + ++ G + A+ A + Sbjct: 176 GMNIEDLKNRLGITIYSLDPWYFDDAICQDTLKEHFKVGSLTGLGLADYDCGIIASGALL 235 Query: 265 SYIKKTQMVNKPTIGYPER---EDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDY 320 Y+K+TQ K ++ + R + +DSA R NLE+ TL +++ SLL +D Sbjct: 236 IYLKETQ---KTSLSHMSRLIPYAAGKYMLLDSATRRNLELCETLREKQKRGSLLWVLDK 292 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G R + I PL I RLD++N + N I I++ L D+ R +S+ Sbjct: 293 TKTAMGARNLRKYIEQPLVQKYDIEKRLDALNELLDNAISREEIREYLSPIYDLERLVSK 352 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + P+D+ + S + + L L+ E L L + L + + Sbjct: 353 ITYQSANPRDMIAFESSL-SMLPHIKYILSEMTSPLLKELYEDLDTL-EDLCTLIKDAIQ 410 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 +D P ++GG +RDG + +D+ RS + K +A L+ E+T IKNLKIK+N G Sbjct: 411 EDPPLAMKEGGIIRDGYNPEVDKLRSAKSDGKDWLAKLESDEREKTGIKNLKIKYNKVFG 470 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y++EVT+S KDL D + +QT++N R+ EL +LE+ I A + +E E Sbjct: 471 YYLEVTNSF-----KDL-VPDYYTRKQTLANAERYIIPELKELEDTILGAEDKLYSLEYE 524 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 + + + + + + ++VIA ID +LA++A++ NY RP I+ +KDGRHP Sbjct: 525 LYSDIRSRVAKDVVRVQKTAKVIAQIDTLASLALVAEQNNYVRPKINEKGVIDIKDGRHP 584 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + FI+ND L NDK ++ ++TGPNM GKST++RQ ALIV+MAQ+G Sbjct: 585 VVEKMIPNDM---FISNDTYL---NDKKD-RIAIITGPNMAGKSTYMRQTALIVLMAQIG 637 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPAS A IG+VD++F+RVG++D+LASG+STFMVEM E A+IL AT++S +ILDEIGR Sbjct: 638 SFVPASKADIGLVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSKSLLILDEIGR 697 Query: 741 GTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GT+T DGLSIAWA IE++ + + L ATH+HELT+L + +N + V ++ + Sbjct: 698 GTSTFDGLSIAWAVIEHISNSKLLGAKTLFATHYHELTELEGKIDNVNNYCIAVKENGDD 757 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ-KDMR-LYYPE 856 IIFL K++ G AD SYGIQV KLAG+P +V RA +I++ + ++ KD+ L P+ Sbjct: 758 IIFLRKIVKGGADKSYGIQVAKLAGVPESVTDRAKEIVEELVQTDITSRIKDIAVLGAPK 817 Query: 857 IQTKESKN---------NLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + K+ + + K+D + E +K L+L ++P+ AL TLY ++ Sbjct: 818 PKAKKYDDVDLAQMSLFDTVKDDDVLKE-LKELDLGNLTPIEALNTLYQLQ 867 >gi|153829924|ref|ZP_01982591.1| DNA mismatch repair protein MutS [Vibrio cholerae 623-39] gi|148874612|gb|EDL72747.1| DNA mismatch repair protein MutS [Vibrio cholerae 623-39] Length = 862 Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust. Identities = 313/889 (35%), Positives = 489/889 (55%), Gaps = 49/889 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E+L TPMM+QY+ +K+ NPD L+FYRMGDFYELF+DDA AS L I+LTKRG G+ Sbjct: 10 ESLSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRGASAGE 69 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 70 PIPMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTV 124 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 T++ LLS N + A+ + A +DI++G F++S + + +++ R PRE++ Sbjct: 125 TDEALLSERVDNLIAAIYHHNGRFGYATMDITSGRFQLSEPQTEEEMAAELQRTSPRELL 184 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 F E + + GN +P F+ ++ ++ + + FG +++ Sbjct: 185 FPE---DFSPVHLMASRQGNRR--RPIWEFELDTAKQQLNQQFGTRDLVGFGVEQAKLGL 239 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA I Y+K TQ P I + ++ +D+A R NLE+ L+G + +L + Sbjct: 240 CAAGCLIQYVKDTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTHNLAGGTDNTLAEV 299 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D+ T G R+ I P+ D+ +N RLD+I ++ L + +LK D+ R Sbjct: 300 LDHCATPMGSRMLKRWIHQPMRDNATLNQRLDAITE-LKETALYGELHPVLKQIGDIERI 358 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTL 435 L+RL + P+D+A +R ++ + ++ LK ELR E + +L LE+ + Sbjct: 359 LARLALRSARPRDLARLRHAMQQLPELHSVMSELKQPHLTELRTHAEPMDELCDLLERAI 418 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 ++ P RDGG + DG A LDE R L + + + L+ + + I LK+ + Sbjct: 419 K----ENPPVVIRDGGVIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGY 474 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 NN G++I+V+ + ++ ++ RQT+ N R+ EL E+++ N+ + AL Sbjct: 475 NNVHGFYIQVSRGQSHLVPP------HYVRRQTLKNAERYIIEELKQHEDKVLNSKSRAL 528 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E + +E L + ++ E L + +A +D+ LA A+ YCRP + ++ Sbjct: 529 ALEKQLWEELFDLLLPHLEQLQQLAASVAQLDVLQNLAERAENLEYCRPTLVQEAGIHIQ 588 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ + ++PFIAN +L+ ++ ++TGPNMGGKST++RQ ALI + Sbjct: 589 GGRHPVVERVV----NEPFIANPIELNPQR-----RMLIITGPNMGGKSTYMRQTALIAL 639 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MA +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V++ Sbjct: 640 MAHIGSYVPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLM 699 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA+ E+L + L ATH+ ELT+L L N L + Sbjct: 700 DEIGRGTSTYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEH 759 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 +GI F+H V G A SYG+ V LAG+P VI A L+ E L P Sbjct: 760 GDGIAFMHAVQEGAASKSYGLAVAGLAGVPKPVIKNARAKLQQLELLSSQ---------P 810 Query: 856 EIQTKESKNNLSKNDKLFVE------KIKCLNLDEMSPLTALKTLYAVK 898 K S+ +++ L E + ++ D+++P AL LY +K Sbjct: 811 AETRKPSRVDIANQLSLIPEPSAIEQALAGVDPDQLTPRQALDMLYQLK 859 >gi|312875821|ref|ZP_07735811.1| DNA mismatch repair protein MutS [Caldicellulosiruptor lactoaceticus 6A] gi|311797302|gb|EFR13641.1| DNA mismatch repair protein MutS [Caldicellulosiruptor lactoaceticus 6A] Length = 863 Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust. Identities = 320/886 (36%), Positives = 510/886 (57%), Gaps = 44/886 (4%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 ++ TPMM+QY+EIK D ++F+R+GDFYE+FF+DA++AS+ L I LT R + Sbjct: 1 MQELTPMMQQYMEIKQKVKDCILFFRLGDFYEMFFEDAIVASKELEIALTSRDCGNNEKA 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A YI KLI+ G+++AICEQ+E P AK +V+R + R++TPGT + Sbjct: 61 PMCGVPYHSATSYIAKLIEKGYKVAICEQVEDPKLAK-----GIVKREITRIITPGTFID 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD--RLISDIMRIDPREIIF 199 + + T +N++ +++ R+E+A+ ++D+STG D +L+++I + +P EI+ Sbjct: 116 ENI--STANNFICCISKDRSEFALTFVDVSTGEMYSCLLEEDLQKLLNEIGKYNPSEILI 173 Query: 200 SEKELSHAEYKSLFETLGN--VAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 S E L+E L + Q F D I + N+ +D S Sbjct: 174 SRSE------DELYEFLKKNCTSFVQMIEFVDLQKCYEVIENQINVGKIDERLILS---- 223 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLK 316 + Y+ +TQ ++ I E +Q+ L ID + NLE+ ++ S++ SLL Sbjct: 224 --VGNLLKYLIETQKISFDYIRRFEFYRVQNYLQIDINTKRNLELTESIIQRSKKNSLLG 281 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D + T G RL + I PL D +IN RLDS+ N ++ I+++L D+ R Sbjct: 282 ILDRTKTSMGSRLLKKWIERPLIDVIEINRRLDSVEQLKSNYSILVQIEELLSRMYDIER 341 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 S+ KD+ ++ I + L L + + L+ E L L + + + Sbjct: 342 LSSKFAYKNVNAKDLLSLKRSIEV-LPALKKLLSSFSAQLLKEIYEGLDTL-EDIYALID 399 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 S +++D P ++GG ++DG + +D R++ SK ++ + K T IKNL+I +N Sbjct: 400 SSINEDAPVTLKEGGIIKDGFNEEVDRLRNISKNSKELLVQYEEKERNLTGIKNLRIGYN 459 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+IEVT S+ S++ DR+I +QT++N R+ T EL LE+ I A + Sbjct: 460 KVFGYYIEVTKSNYSLVP------DRYIRKQTLANAERYITEELKKLEDEILGADQKLIE 513 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E + F + + I Q E + + IAI+D+ + A +A + Y RP + +K+ Sbjct: 514 LEYQLFCEIRDRIEAQIERIQKTASYIAILDVLCSFARIAIDNEYVRPNVCLGDRIYIKN 573 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VEK + + + FI ND +L D+ ++ ++TGPNM GKST++RQ ALIVIM Sbjct: 574 GRHPVVEKMIGRGN---FIPNDTEL----DQAENRVLIITGPNMAGKSTYMRQVALIVIM 626 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQMG +VPA AHIGIVDK+FSR+G++D+++SG+STFMVEM E A+IL AT +S +I D Sbjct: 627 AQMGCFVPADEAHIGIVDKIFSRIGASDDISSGQSTFMVEMSEVANILKNATPKSLIIFD 686 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 E+GRGT+T DGLSIAWA +EY+ + ++ + L ATH+HELT+L + + N + V + Sbjct: 687 EVGRGTSTYDGLSIAWAVLEYVADKSKIGAKTLFATHYHELTELEERIPGVKNYRVDVKE 746 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 + IIFL K++ G D SYGI V +LAG+P V+ RA +ILK E+ N+K++R Sbjct: 747 EGKNIIFLRKIVRGGCDSSYGIHVARLAGIPEEVLKRAGEILKQLEEA-DINRKNIRKLR 805 Query: 855 PEIQTK--ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 EI+ + E + S + ++KI+ L++ ++P+ AL L +K Sbjct: 806 KEIKKEFTEQIDFFSYKKEEIIDKIEKLDILNITPVQALNILSELK 851 >gi|323705358|ref|ZP_08116933.1| DNA mismatch repair protein MutS [Thermoanaerobacterium xylanolyticum LX-11] gi|323535260|gb|EGB25036.1| DNA mismatch repair protein MutS [Thermoanaerobacterium xylanolyticum LX-11] Length = 857 Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust. Identities = 329/889 (37%), Positives = 517/889 (58%), Gaps = 51/889 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD--IPM 83 TPMM QY++IK DS++F+R+GDFYE+FFDDA++AS+ L I LT GK G++ PM Sbjct: 4 TPMMEQYLKIKEKYKDSILFFRIGDFYEMFFDDAVIASKELEIVLT--GKDCGQEERAPM 61 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H A+ YI KL+K G+++AICEQ+E P AK LV R+V+R+ TPGT+ Sbjct: 62 AGVPFHAADFYIDKLVKKGYKVAICEQLEDPAYAK-----GLVERDVIRVFTPGTVINTN 116 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTG---IFKISTSNHDRLISD-IMRIDPREIIF 199 L +NYL+++ + + ++++D+ TG + +I+ N R I D IMR P EII Sbjct: 117 SLEEKSNNYLLSIFKEGDGYGLSFVDVLTGELFVTQITKCNDIRKIYDEIMRYSPSEIIA 176 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSI--SESRIADYYNITTVDTFGSFSQVEK 257 + E K L + L + V +D + +E I +N + D + Sbjct: 177 NN---DFFELKRLVKILNSSKVFINK--YDKVLNNAEDIIITQFNRSLKDLKLERKKYAI 231 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS--GSREQSLL 315 + A+ + Y+K+ Q V + + S + +D+ NLEI+ +++ S+ +LL Sbjct: 232 KSLASVLLYLKEMQKVELKQLNNLTYYEDNSFMLLDNNTIRNLEIVYSINRDHSKSGTLL 291 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D ++T GGRL + PL D KIN RL+S++ + I+ ILK D+ Sbjct: 292 SVLDQTVTPMGGRLLKRWLEEPLIDVEKINYRLNSVSELYNDYKGRLDIRDILKGIYDLE 351 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEK 433 R S+L KD+ I+ I + L K++ +E+ ++ L+ + ++K Sbjct: 352 RLSSKLVYQNINAKDLLSIKISIERLPKLKQLLDKYKSNYLKEIFSKLDTLQDIHDLIDK 411 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 ++ DD + ++G ++DG D ++DE R K IA+L+ E+T IK LKI Sbjct: 412 SIK----DDPSSNVKEGNIIKDGFDKNIDELRRASIDGKSWIANLESYEKEKTGIKTLKI 467 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GY+IEV+ S S + ++ +I +QT++N R+ T EL ++E +I A Sbjct: 468 GYNKVFGYYIEVSKSYISSVPEN------YIRKQTLANAERYITPELKEIEEKILGAETK 521 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + +E E F+ + I + + S+ IAI+D+ ++LA +A+ NY +PI+++S + Sbjct: 522 LVEMEYEIFDRIREQIKNEIYRIQMTSRYIAILDVLVSLATVAETNNYVKPIVNSSDRIV 581 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +KDGRHP++E + FI+ND ++ +DK + ++TGPNM GKST++RQ ALI Sbjct: 582 IKDGRHPVIETIMDDS----FISNDIEI---DDKKP--IMIITGPNMAGKSTYMRQVALI 632 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 V+MAQ+GS+VPASYA IG+VD++F+RVG++D+L SG+STFMVEM E + ILN AT S + Sbjct: 633 VLMAQIGSFVPASYAEIGVVDRIFTRVGASDDLFSGQSTFMVEMNEVSLILNSATKNSLI 692 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ILDE+GRGT+T DG+SIA A +EY+H+ + + + ATH+HELT+L L N + V Sbjct: 693 ILDEVGRGTSTYDGMSIACAILEYIHDKIKAKTMFATHYHELTNLEDKLDGIKNYNISVE 752 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 ++++ IIFL K+IPG AD SYGIQV KLAGLP+ VI A IL E D+ + Sbjct: 753 ETDDEIIFLRKIIPGAADKSYGIQVAKLAGLPDEVIQNAKKILNNLE------NSDLEVA 806 Query: 854 YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTL 902 + T+ +L K + +E+I L+++ ++P+ AL LY +K L Sbjct: 807 TTFMPTQIDIFSLEK--ETLIEEIVDLDIENITPIQALNYLYDLKKKAL 853 >gi|304316821|ref|YP_003851966.1| DNA mismatch repair protein MutS [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778323|gb|ADL68882.1| DNA mismatch repair protein MutS [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 857 Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust. Identities = 324/886 (36%), Positives = 506/886 (57%), Gaps = 45/886 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD--IPM 83 TPMM QY +IK DS++F+R+GDFYE+FFDDA++A++ L I LT GK G+D PM Sbjct: 4 TPMMEQYFKIKEKYKDSILFFRIGDFYEMFFDDAIIAAKELEIVLT--GKDCGQDERAPM 61 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H A+ YI KL+K G+++AICEQ+E P AK LV R+V+R+ TPGT+ Sbjct: 62 AGVPFHAADFYIDKLVKKGYKVAICEQLEDPASAK-----GLVDRDVIRVFTPGTVINTN 116 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTG---IFKISTSNHDRLISD-IMRIDPREIIF 199 + +NYL+++ + + ++++D+ TG + +I + R I D IMR +P EII Sbjct: 117 SIEEKSNNYLLSIFKDENNYGLSFVDVMTGDLFVTQIIKCDDIRKIYDEIMRYNPSEIIA 176 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 + S K L + + + ++ ES I++ +N + + + Sbjct: 177 NNDFFS---LKKLVRVINSSKIYINKYENNYQDFESIISNQFNKSLNELGLEGKNYAIKS 233 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT--LSGSREQSLLKT 317 + Y+K+ Q V + + S + +D+ NLEI+++ + SR+ +LL Sbjct: 234 LTTVLIYLKELQKVQLSQLNNLTYYEDNSFMLLDNNTIKNLEIVQSPNRNNSRDGTLLSV 293 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D ++T GGRL I PL D KIN RLDS++ + + ++ LK D+ R Sbjct: 294 LDQTVTPMGGRLLKRWIEEPLIDIEKINLRLDSVDELFNDFKGRSDLRNALKGIYDLERL 353 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 S+L KD+ I+ I I +L K + L+ KL L Q + + Sbjct: 354 SSKLVYQNINAKDLLSIKVSIERLPKIKDLISKYN-SIYLKEIFLKLDTL-QDIYDLIDK 411 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + D+ T ++G ++DG D ++DE R K I +L+L E T IK LK+ +N Sbjct: 412 SIKDEPSTSVKEGNIIKDGFDKNVDELRKAATNGKSWITNLELNEKERTGIKTLKVGYNK 471 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GYFIEV+ S S + ++ +I +QT++N R+ T EL ++E +I A + + Sbjct: 472 VFGYFIEVSKSYISSVPQN------YIRKQTLANAERYITPELKEIEEKILGAETKLVEL 525 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E E F + I + + S+ IA++D+ +LA++A+ NY +PI+++ ++KDG Sbjct: 526 EYEIFNGIREQIKNEINRIQMTSKYIAVLDVLTSLAMVAESNNYVKPIVNDGDRILIKDG 585 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP++E + FI+ND ++ + ++TGPNM GKST++RQ ALIV+MA Sbjct: 586 RHPVIETIVDDS----FISNDIEID-----EKKPIMIITGPNMAGKSTYMRQVALIVLMA 636 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+GS+VPASYA IGIVD++F+RVG++D+L SG+STFMVEM E + ILN AT +S +ILDE Sbjct: 637 QVGSFVPASYAEIGIVDRIFTRVGASDDLFSGQSTFMVEMNEVSVILNSATQKSLIILDE 696 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 +GRGT+T DG+SIA A +EY+H+ + + + ATH+HELT L L N + V ++N+ Sbjct: 697 VGRGTSTYDGMSIACAILEYIHDKIKAKTMFATHYHELTKLENQLNGIKNYNISVDETND 756 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 IIFL K+IPG AD SYGIQV KLAGLPN VI A IL + E + N + + Sbjct: 757 EIIFLRKIIPGSADKSYGIQVAKLAGLPNDVIDNAKKILNSLE---NSNGE------VAV 807 Query: 858 QTKESKNNLSKNDK-LFVEKIKCLNLDEMSPLTALKTLYAVKAWTL 902 +T ++ ++ +K + +I L+++ ++P+ AL LY +K L Sbjct: 808 ETAATQMDIFSFEKDALIAEIADLDIENITPIQALNYLYGLKKKAL 853 >gi|224369489|ref|YP_002603653.1| DNA mismatch repair protein MutS [Desulfobacterium autotrophicum HRM2] gi|259511164|sp|C0QFS1|MUTS_DESAH RecName: Full=DNA mismatch repair protein mutS gi|223692206|gb|ACN15489.1| MutS [Desulfobacterium autotrophicum HRM2] Length = 895 Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust. Identities = 337/916 (36%), Positives = 513/916 (56%), Gaps = 71/916 (7%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 +K TPMM QY+ IK PD+++FYRMGDFYE+F DDAL A+ L I LT R K I Sbjct: 3 VKKETPMMEQYLSIKKRYPDTILFYRMGDFYEMFLDDALKAAPVLEIALTSRNKTQEDPI 62 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP A+ YI KLI+ G ++A+CEQ+E P R + +V+R VVR++TPG + Sbjct: 63 PMCGVPHRAADVYIAKLIESGLKVAVCEQMEDP-----RSAQGIVKREVVRVITPGMILN 117 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR------LISDIMRIDPR 195 + LL +N+L A+ + +A +DISTG+F+ + + L+ + +RID + Sbjct: 118 EDLLDKKSNNFLAALCICQGAAGLACMDISTGMFRTTQTVAVNGKVPLSLVDEALRIDAK 177 Query: 196 EIIFSEKELSHAEYKSL---FETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSF 252 E++ Y L FET+ V N D + R+ + + +++ FG Sbjct: 178 ELLLPASFKGDPTYSQLIKAFETIQISYVGNENFKLDSA--RERLKEKFRTRSLEGFGCE 235 Query: 253 SQVEKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS-R 310 TAAA AI SY+++TQ+ + ER ++ + L ID + NLE+L+ + S + Sbjct: 236 DLTAGTAAAGAILSYVQETQLRETDHVLTLERYELNTYLIIDDRSCRNLELLKNIQTSDK 295 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 + SL+ +D +IT GGRL I PL I RLD++ +NP + N ++ LK Sbjct: 296 KGSLISVLDCTITAMGGRLLKAWIRYPLISMDGIEARLDAVAEAKENPGIRNSLRTHLKD 355 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLK--NDLPEEL-RG-AVEKLKK 426 D+ R S++ +G P+D+ ++ + L L K N L L +G +E +K Sbjct: 356 VYDLERLGSKISMGHANPRDLTALKISLYK----LPLLFKDLNQLSASLLQGHGIEDREK 411 Query: 427 LPQSL---EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 + L ++ + +D P +GG + DG LDE + + IA K Sbjct: 412 VSTELFELADLINQTIREDAPLALNEGGIICDGYSPELDEILEIARNGRSWIAKTGAKEK 471 Query: 484 EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDL 543 E+T + +LKIK N GYFIEV+ + + D +I +QT+ N RF T EL ++ Sbjct: 472 EKTGLSSLKIKFNKVFGYFIEVSKIQSQ------QVPDHYIRKQTLVNAERFITDELKEV 525 Query: 544 ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCR 603 E+++ NA +E F + +I++++ S+ +Q +A +D+ +ALA A+E NY R Sbjct: 526 ESKVLNAQERRSSLEYALFCKVRESIVQRTPSIFKIAQFLAEVDVVLALATTAEENNYTR 585 Query: 604 PIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 P ++ ++DGRHP+VEK + + +I N L D S ++ ++TGPNM GK Sbjct: 586 PALNKDQVLDIEDGRHPVVEKMV---VGERYIPNSIRL----DNTSDQVQIITGPNMAGK 638 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 ST LRQ ALI +MAQMGS+VPA+ A + I+D++F+RVG+ DNL+ G+STFMVEM ETA+I Sbjct: 639 STVLRQVALISLMAQMGSFVPAARADLCIIDRIFTRVGALDNLSLGQSTFMVEMEETANI 698 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKS 781 +N A S VILDEIGRGT+T DG+SIAWA EYLH+ + + L ATH+HELT L K Sbjct: 699 VNNAKENSLVILDEIGRGTSTFDGMSIAWAVAEYLHDLDGKGVKTLFATHYHELTRLEKL 758 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE- 840 R N + V + N+ IIFL +++PG + SYGIQV +LAG+P+ VI++A IL + E Sbjct: 759 KPRVKNFNIAVKEFNDNIIFLRRLVPGGTNKSYGIQVARLAGVPDAVITKAKQILASIEQ 818 Query: 841 ---KLYHHNQKDMRLYYPEIQTKESKNNLS-------KNDKLFV-----EKIKCL---NL 882 ++ ++K ++ K++KNN S + LF E IK L ++ Sbjct: 819 SPDQVVTQDKKQVK--------KQTKNNHSARSGSRQQQMDLFAGHDYDEIIKVLDQTDI 870 Query: 883 DEMSPLTALKTLYAVK 898 M+P+ AL ++ +K Sbjct: 871 STMTPIDALNLIHELK 886 >gi|114320641|ref|YP_742324.1| DNA mismatch repair protein MutS [Alkalilimnicola ehrlichii MLHE-1] gi|122311686|sp|Q0A8K3|MUTS_ALHEH RecName: Full=DNA mismatch repair protein mutS gi|114227035|gb|ABI56834.1| DNA mismatch repair protein MutS [Alkalilimnicola ehrlichii MLHE-1] Length = 878 Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust. Identities = 313/888 (35%), Positives = 484/888 (54%), Gaps = 34/888 (3%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQ++ IK+ +PD L+FYRMGDFYELF++DA A++ L ITLT RG+ G+ IPM G Sbjct: 13 TPMMRQFLRIKAEHPDILLFYRMGDFYELFYEDAERAAKLLDITLTTRGQSAGEPIPMAG 72 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH Y+ +L++ G +AICEQI P +K V R VVR+VTPGTLT++ LL Sbjct: 73 VPVHAVESYLARLVRQGESVAICEQIGDP-----DNSKGPVERQVVRIVTPGTLTDEALL 127 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKEL 204 SN L A++ ++ W +A +++S+G F ++ ++ L +D+ R++P E++ E Sbjct: 128 EERQSNILAALSCHQSRWGLASLELSSGRFSLTEPADEQALAADLERLNPAELLVDE--- 184 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ-VEKTAAAAA 263 A +G +P F+ + + + + + FG+ AA A Sbjct: 185 --ALTLPTGLAVGPGLTRRPPWHFELDTATDLLTEQFGTRDLAGFGAQDHSAGLAAAGAL 242 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 + Y+++TQ P I + E + ID+A+R NLE+ R LSG E +L +D ++ Sbjct: 243 LQYVRETQRSALPHIRRLQVEHGDQAIVIDAASRRNLELERNLSGGTEHTLASVLDSTVN 302 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL + PL D T + R ++ + L +++ L+ DV R L+R+ + Sbjct: 303 AMGSRLLRRWLNRPLRDRTTLQARHQAVEILMAES-LTEALRRQLRGISDVERILARVAL 361 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 G P+D+ +R+ + +I P L + + PQ+L+ L L D Sbjct: 362 GSARPRDLTGLRETLARLPDIQATLTGAGAPR-LVDLAAQCGEHPQTLDH-LRRALVDQP 419 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P RDGG + +G DA+LDE R+L + + + L+ + E T I LK+ +N GY+I Sbjct: 420 PVVIRDGGVIAEGYDATLDELRTLSENADNYLLELEQRERERTGISTLKVGYNRVHGYYI 479 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EVT + A + + ++ RQT+ + R+ EL E+++ +A AL E +E Sbjct: 480 EVTRAQADAVPAE------YVRRQTLKGVERYILPELKAFEDKVLSAREKALAREKVLYE 533 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L ++ L + + +A +D A A A+ +Y RP + + ++ GRHP+VE Sbjct: 534 QLLASLASDLAPLQDTAAALAELDTLAAFAERAQALDYSRPELRDGAGLRIEAGRHPVVE 593 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 +L PF+ ND L +D+ ++ ++TGPNMGGKST++RQ ALI +MA +GS+V Sbjct: 594 YSL----DGPFVPNDLTL---DDRR--RMLIITGPNMGGKSTYMRQVALITLMAHIGSFV 644 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA A +G VD++F+R+G++D+LA GRSTFMVEM ETA+IL+ AT QS V++DEIGRGT+ Sbjct: 645 PARAASLGPVDRIFTRIGASDDLAGGRSTFMVEMTETANILHNATAQSLVLMDEIGRGTS 704 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DGL++AWAT E L R L ATH+ E+T L + N L + E I+FLH Sbjct: 705 TFDGLALAWATAERLARDQRAYTLFATHYFEMTALPEQCPGASNVHLDAVEHGERIVFLH 764 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESK 863 V PG A SYG+QV LAG+P V+ A + L+ E+ R ++ Sbjct: 765 AVKPGPASQSYGLQVAALAGVPGPVLEAAREKLRALEE----ESSRQRAEPDQLSLFAEP 820 Query: 864 NNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTLEKYSTDEDS 911 + + ++ DE+SP AL LY +KA T + D+ + Sbjct: 821 APPPPLPSAAEQALSEVDPDELSPRQALDLLYRLKALTSGEEGADKKA 868 >gi|269140215|ref|YP_003296916.1| DNA mismatch repair protein [Edwardsiella tarda EIB202] gi|267985876|gb|ACY85705.1| DNA mismatch repair protein [Edwardsiella tarda EIB202] gi|304560046|gb|ADM42710.1| DNA mismatch repair protein MutS [Edwardsiella tarda FL6-60] Length = 852 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 312/882 (35%), Positives = 485/882 (54%), Gaps = 38/882 (4%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +NL + TPMM+QY+ +K+ +PD L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 DNLDAHTPMMQQYLRLKAQHPDILLFYRMGDFYELFYDDARRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H +Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGVPYHAVENYLAKLVQLGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTV 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LLS N L A+ + + A +DIS+G F+ + + D + +++ R +P E++ Sbjct: 120 SDEALLSERQDNLLAAIWQSPNGFGYATLDISSGRFRAAEPQDADSMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 + E+ + A L E + +P F+ + ++ + + FG + + Sbjct: 180 YPEEFAAMA----LIEQRRGLR-RRPMWEFELETARQQLNLQFGTRDLSGFGVEQAPLAL 234 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA + Y K TQ P I E Q + +D+A R NLE+ + L+G +E +L Sbjct: 235 RAAGCLLQYAKDTQRTMLPHIRAITMERQQDGIIMDAATRRNLELTQNLAGGQENTLAAV 294 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D S+T G R+ + P+ D + R D+I + LI+ +Q +L+ D+ R Sbjct: 295 LDASVTAMGSRMLKRWLHMPIRDRQALQRRQDAIEALLP---LIDELQPLLRQVGDLERI 351 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 L+RL + P+D+A +R + + L L E L + + +L + L Sbjct: 352 LARLALRSARPRDLARMRVAFQQ-LPTLQTLLGERGGEALAPLARQAGRF-DALCELLER 409 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 L D P RDGG + G A LDE R+L D + + L+++ E+ + LK+ N Sbjct: 410 ALVDTPPVLVRDGGVIASGYHAELDEWRALADGASDYLDRLEIREREKLGLDTLKVGFNA 469 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+I+V+ + ++ ++ RQT+ N R+ EL + E+++ + AL + Sbjct: 470 VHGYYIQVSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSKGKALAL 523 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + ++ L + ++ L ++ +A +D+ LA A Y RP + +++G Sbjct: 524 EKQLYDELFDLLLPHLAELQQSATALAELDVLSGLAERADRYGYVRPQLSERAGINIEEG 583 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ LK+ PFIAN LS ++ ++ ++TGPNMGGKST++RQ ALIV+MA Sbjct: 584 RHPVVEQVLKE----PFIANPLTLS-----SARRMLVITGPNMGGKSTYMRQAALIVLMA 634 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GS+VPA A IG VD++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V++DE Sbjct: 635 HIGSFVPAQRAVIGPVDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEHSLVLMDE 694 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGT+T DGLS+AWA E L + L ATH+ ELT L + L+ +N L + E Sbjct: 695 IGRGTSTYDGLSLAWACAESLASRIKAMTLFATHYFELTTLPEKLEGVYNVHLDALEHGE 754 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 I F+H V G A SYG+ V LAG+P VI RA L+ E L H + + Sbjct: 755 TIAFMHSVQDGAASKSYGLAVAALAGVPREVIKRARQKLRELETLSQHGSQS------QA 808 Query: 858 QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + + + +E + ++ D ++P AL LY +K Sbjct: 809 DSAQLPLLVEAEPSAALEALTAIDPDALTPRQALDWLYRLKG 850 >gi|260893758|ref|YP_003239855.1| DNA mismatch repair protein MutS [Ammonifex degensii KC4] gi|260865899|gb|ACX53005.1| DNA mismatch repair protein MutS [Ammonifex degensii KC4] Length = 865 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 316/884 (35%), Positives = 505/884 (57%), Gaps = 58/884 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR-GKHLGKDIPMC 84 TPMM+QY+EIK PD+++F+ +GDFYE+FF+DA+ A+ L + LT R LG+ +PMC Sbjct: 5 TPMMQQYLEIKKQYPDAILFFHLGDFYEMFFEDAVKAAPILEVALTSRDAGRLGR-VPMC 63 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H+A+ YI +L+ G ++A+CEQ+E P +AK LV+R V R++TPGT E + Sbjct: 64 GVPCHSASSYIARLVSHGFKVALCEQLEDPSQAK-----GLVKRGVTRVITPGTFFEGET 118 Query: 145 LSPTDSNYLMAVARIRTE-WAIAWIDISTGIFKIST----SNHDRLISDIMRIDPREIIF 199 T +Y++AVA + + +A ++ TG F++++ D+L+ ++ R+ P E++ Sbjct: 119 ADKTSHSYVVAVAPGSGKTYGLASAEVGTGEFRVTSFTGAGAQDKLMDELFRLQPAEVVL 178 Query: 200 SE--KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 E +EL H ++ + +F D + +++ + Y + G + Sbjct: 179 PEGNEELKHLVRAAV--PAAALTFWPQELFRDLARAKAALEGY------EREGEWETEAV 230 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQSLLK 316 AA +Y+ +TQ + + + +D+A R NLE+ R+L+ GSR +LL+ Sbjct: 231 LAAGVLAAYLAETQKRELKHLKKISSYRPEGFMLLDAATRRNLELTRSLADGSRRGTLLE 290 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +DY++TG GGR + I PL D I RL+++ + ++ + I+ LK D+ R Sbjct: 291 VLDYTLTGMGGRRLRDWIEQPLLDPAAIEERLEAVAYLVEQAVEREEIRARLKKMGDIER 350 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE---- 432 SRL G +D+ ++D +L L ++ E L GA L +L LE Sbjct: 351 LASRLSFGLANARDLLSLKD---------SLILAGEIKERLSGAEGLLGRLRDQLENLDD 401 Query: 433 --KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 ++ ++ D P ++GG +R+G +D R++R + + +A L+ K E T IK+ Sbjct: 402 IASLIAEAIAPDPPATLQEGGLIREGYHPEVDRLRAIRRDAHKYLAELEAKEKERTGIKS 461 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LKI +N GY+IEVT + ++ D + RQT++ RF T EL + E I A Sbjct: 462 LKIGYNRVFGYYIEVTKPNLHLVPPD------YQRRQTLTQAERFITPELKEYEEMILGA 515 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 +E E F + + + + + A++ I ID +LA+ A + NY RP + +S Sbjct: 516 EERLYSLEYELFCQVRDQVQAHLDRILRAARAIGQIDALASLAVAALKGNYVRPRVSSSD 575 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 +K+GRHP+VE+ L + F+ ND L P+ + + ++TGPNMGGKST++RQ Sbjct: 576 IIRIKEGRHPVVERALGPGN---FVPNDTWLGGPDKRVA----IITGPNMGGKSTYMRQV 628 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALIV+MAQ+GS+VPA+ A IG+VD++F+RVG+ADNL G+STFMVEM E +IL QAT++ Sbjct: 629 ALIVLMAQIGSFVPAAEAEIGVVDRIFTRVGAADNLYGGQSTFMVEMGECRTILTQATSR 688 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V++DE+GRGT+T DG+SIA A +EYL + + L +TH+HELTDL++ L N T+ Sbjct: 689 SLVVMDEVGRGTSTYDGMSIARAIVEYLVHRIKAKTLFSTHYHELTDLAR-LPGVFNLTV 747 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM 850 V + + FL++V+PG AD SYG+ V LAGLP VI RA +IL+ E+ +++ Sbjct: 748 AVREEAGRVSFLYRVLPGKADKSYGLHVAALAGLPKEVIERAKEILEELER-----RQEK 802 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 +L P + + L E + L+LD+++PL AL L Sbjct: 803 KLEKPCRVVQLDMFSCGVEHPLLAELAR-LDLDQVTPLQALNLL 845 >gi|229520831|ref|ZP_04410253.1| DNA mismatch repair protein MutS [Vibrio cholerae TM 11079-80] gi|229342064|gb|EEO07060.1| DNA mismatch repair protein MutS [Vibrio cholerae TM 11079-80] Length = 879 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 313/889 (35%), Positives = 488/889 (54%), Gaps = 49/889 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E+L TPMM+QY+ +K+ NPD L+FYRMGDFYELF+DDA AS L I+LTKRG G+ Sbjct: 27 ESLSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRGASAGE 86 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 87 PIPMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTV 141 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 T++ LLS N + A+ + A +DI++G F++S + + +++ R PRE++ Sbjct: 142 TDEALLSERVDNLIAAIYHHNGRFGYATMDITSGRFQLSEPQTEEEMAAELQRTSPRELL 201 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 F E + + GN +P F+ ++ ++ + + FG +++ Sbjct: 202 FPE---DFSPVHLMASRQGNRR--RPIWEFELDTAKQQLNQQFGTRDLVGFGVEQAKLGL 256 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA I Y+K TQ P I + ++ +D+A R NLE+ L+G + +L + Sbjct: 257 CAAGCLIQYVKDTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTHNLAGGTDNTLAEV 316 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D+ T G R+ I P+ D+ +N RLD+I ++ L + +LK D+ R Sbjct: 317 LDHCATPMGSRMLKRWIHQPMRDNATLNQRLDAITE-LKETALYGELHPVLKQIGDIERI 375 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTL 435 L+RL + P+D+A +R ++ + ++ LK ELR E + L LE+ + Sbjct: 376 LARLALRSARPRDLARLRHAMQQLPELHSVMSELKQPHLTELRTHAEPMDGLCDLLERAI 435 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 ++ P RDGG + DG A LDE R L + + + L+ + + I LK+ + Sbjct: 436 K----ENPPVVIRDGGVIADGYSAELDEWRDLANGATEFLEHLEAEERDRHGIDTLKVGY 491 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 NN G++I+V+ + ++ ++ RQT+ N R+ EL E+++ N+ + AL Sbjct: 492 NNVHGFYIQVSRGQSHLVPP------HYVRRQTLKNAERYIIEELKQHEDKVLNSKSRAL 545 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E + +E L + ++ E L + +A +D+ LA A+ YCRP + ++ Sbjct: 546 ALEKQLWEELFDLLLPHLEQLQQLAASVAQLDVLQNLAERAENLEYCRPTLVQEAGIHIQ 605 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ + ++PFIAN +L+ ++ ++TGPNMGGKST++RQ ALI + Sbjct: 606 GGRHPVVERVM----NEPFIANPIELNPQR-----RMLIITGPNMGGKSTYMRQTALIAL 656 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MA +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V++ Sbjct: 657 MAHIGSYVPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLM 716 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA+ E+L + L ATH+ ELT+L L N L + Sbjct: 717 DEIGRGTSTYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEH 776 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 +GI F+H V G A SYG+ V LAG+P VI A L+ E L P Sbjct: 777 GDGIAFMHAVQEGAASKSYGLAVAGLAGVPKPVIKNARAKLQQLELLSSQ---------P 827 Query: 856 EIQTKESKNNLSKNDKLFVE------KIKCLNLDEMSPLTALKTLYAVK 898 K S+ +++ L E + ++ D+++P AL LY +K Sbjct: 828 AETRKPSRVDIANQLSLIPEPSAVEQALAGVDPDQLTPRQALDMLYQLK 876 >gi|258623794|ref|ZP_05718751.1| DNA mismatch repair protein MutS [Vibrio mimicus VM603] gi|258583917|gb|EEW08709.1| DNA mismatch repair protein MutS [Vibrio mimicus VM603] Length = 888 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 313/883 (35%), Positives = 487/883 (55%), Gaps = 37/883 (4%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E+L TPMM+QY+ +K+ NPD L+FYRMGDFYELF+DDA AS L I+LTKRG G+ Sbjct: 36 ESLSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRGASAGE 95 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 96 PIPMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTV 150 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 T++ LLS N + A+ + A +DI++G F++S + + +++ R PRE++ Sbjct: 151 TDEALLSERVDNLIAAIYHHNGHFGYATMDITSGRFQLSEPQTEEEMAAELQRTSPRELL 210 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 F E A + GN +P F+ + ++ ++ + + FG +Q+ Sbjct: 211 FPE---DFAPVHLMANRQGNRR--RPIWEFELATAKQQLNQQFGTRDLVGFGVEQAQLGL 265 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA I Y+K TQ P I + ++ +D+A R NLE+ L+G + +L Sbjct: 266 CAAGCLIQYVKDTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTYNLAGGTDNTLADV 325 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D+ T G R+ I P+ D +N RLD+I ++ L + +LK D+ R Sbjct: 326 LDHCATPMGSRMLKRWIHQPMRDIATLNQRLDAIGE-LKETALYAELHPVLKQIGDIERI 384 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEKLKKLPQSLEKTL 435 L+RL + P+D+A +R ++ + +L + P +LR + + +L LE+ + Sbjct: 385 LARLALRSARPRDLARLRHAMQQLPELHSLLTELGQPHLAQLRTHAQPMDELCNLLERAI 444 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 ++ P RDGG + DG A LDE R L + + + L+ + + I LK+ + Sbjct: 445 K----ENPPVVIRDGGVIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGY 500 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 NN G++I+V+ + ++ ++ RQT+ N R+ EL E+++ N+ + AL Sbjct: 501 NNVHGFYIQVSRGQSHLVPP------HYVRRQTLKNAERYIIEELKQHEDKVLNSKSRAL 554 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E + +E L + ++ E L + IA +D+ LA A+ YCRP + + Sbjct: 555 AVEKQLWEELFDLLLPHLEQLQQLAASIAQLDVLQNLAERAESLEYCRPTLVKEAGIRIL 614 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ + ++PFIAN +L+ ++ ++TGPNMGGKST++RQ ALI + Sbjct: 615 GGRHPVVEQVM----NEPFIANPIELN-----PQRRMLIITGPNMGGKSTYMRQTALIAL 665 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MA +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT+ S V++ Sbjct: 666 MAHIGSYVPAESAQIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATSHSLVLM 725 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA+ E+L L ATH+ ELT+L SL N L + Sbjct: 726 DEIGRGTSTYDGLSLAWASAEWLAREIGALTLFATHYFELTELPNSLPHLANVHLDAVEH 785 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 + I F+H V G A S+G+ V LAG+P VI A L+ E L + + Sbjct: 786 GDSIAFMHAVQEGAASKSFGLAVAGLAGVPKPVIKNARAKLQQLELLSSQPAETRKPSRV 845 Query: 856 EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +I + S L + + + L+ DE++P AL LY +K Sbjct: 846 DIANQLS---LIPEPSVVEQALAELDPDELTPRQALDALYRLK 885 >gi|262172377|ref|ZP_06040055.1| DNA mismatch repair protein MutS [Vibrio mimicus MB-451] gi|261893453|gb|EEY39439.1| DNA mismatch repair protein MutS [Vibrio mimicus MB-451] Length = 862 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 311/883 (35%), Positives = 489/883 (55%), Gaps = 37/883 (4%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E+L TPMM+QY+ +K+ NPD L+FYRMGDFYELF+DDA AS L I+LTKRG G+ Sbjct: 10 ESLSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRGASAGE 69 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 70 PIPMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTV 124 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 T++ LLS N + ++ + A +DI++G F++S + + +++ R PRE++ Sbjct: 125 TDEALLSERVDNLIASIYHHNGRFGYATMDITSGRFQLSEPQTEEEMAAELQRTSPRELL 184 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 F E A + GN +P F+ + ++ ++ + + FG +Q+ Sbjct: 185 FPE---DFAPVHLMANRQGNRR--RPIWEFELATAKQQLNQQFGTRDLVGFGVEQAQLGL 239 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA I Y+K TQ P I + ++ +D+A R NLE+ L+G + +L Sbjct: 240 CAAGCLIQYVKDTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTYNLAGGTDNTLADV 299 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D+ T G R+ I P+ D+ +N RLD+I ++ L + +LK D+ R Sbjct: 300 LDHCATPMGSRMLKRWIHQPMRDTATLNQRLDAIGE-LKEAALYAELHPVLKQIGDIERI 358 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEKLKKLPQSLEKTL 435 L+RL + P+D+A +R ++ + +L + P +LR + + +L LE+ + Sbjct: 359 LARLALRSARPRDLARLRHAMQQLPELHSLLTELGQPHLAQLRTHAQPMDELCNLLERAI 418 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 ++ P RDGG + DG A LDE R L + + + L+ + + I LK+ + Sbjct: 419 K----ENPPVVIRDGGVIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGY 474 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 NN G++I+V+ + ++ ++ RQT+ N R+ EL E+++ N+ + AL Sbjct: 475 NNVHGFYIQVSRGQSHLVPP------HYVRRQTLKNAERYIIEELKQHEDKVLNSKSRAL 528 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E + +E L + ++ E L + +A +D+ LA A+ YCRP + + Sbjct: 529 AVEKQLWEELFDLLLPHLEQLQQLAASLAQLDVLQNLAERAESLEYCRPTLVKEAGIRIL 588 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ + ++PFIAN +L+ ++ ++TGPNMGGKST++RQ ALI + Sbjct: 589 GGRHPVVEQVM----NEPFIANPIELNPQR-----RMLIITGPNMGGKSTYMRQTALIAL 639 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MA +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT+ S V++ Sbjct: 640 MAHIGSYVPAESAQIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATSHSLVLM 699 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA+ E+L L ATH+ ELT+L SL N L + Sbjct: 700 DEIGRGTSTYDGLSLAWASAEWLAREIGALTLFATHYFELTELPNSLPHLANVHLDAVEH 759 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 + I F+H V G A S+G+ V LAG+P VI A L+ E L + + Sbjct: 760 GDSIAFMHAVQEGAASKSFGLAVAGLAGVPKPVIKNARAKLQQLELLSSQPAETRKPSRV 819 Query: 856 EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +I + S L + +++ L+ DE++P AL LY +K Sbjct: 820 DIANQLS---LIPEPSVVEQELAELDPDELTPRQALDALYRLK 859 >gi|303241530|ref|ZP_07328031.1| DNA mismatch repair protein MutS [Acetivibrio cellulolyticus CD2] gi|302590948|gb|EFL60695.1| DNA mismatch repair protein MutS [Acetivibrio cellulolyticus CD2] Length = 872 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 320/892 (35%), Positives = 516/892 (57%), Gaps = 54/892 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY++IK D ++F+R+GDFYE+FF DA AS+ L ITLT + L + PMCG Sbjct: 5 TPMMQQYLDIKGQYKDCILFFRLGDFYEMFFSDAETASKELEITLTGKDCGLDERAPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A+ YI +LI G+++AICEQIE P AK +V+R+V+R+VTPGT+T+ +L Sbjct: 65 VPFHSADSYICRLINKGYKVAICEQIEDPAMAK-----GIVKRDVIRVVTPGTVTDSAML 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIF---KISTSNHD-RLISDIMRIDPREIIFSE 201 +NYLM++ + +T + IA++DI+TG F I+ N + +L+ +I R P E++ + Sbjct: 120 DDKKNNYLMSLYKHKTYFGIAFVDITTGDFTSTSIALGNTESKLMDEIARFAPSEMVVNS 179 Query: 202 KELSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTV--DTFGSFSQVEKT 258 + LS + N+ ++ + +F+ S+ ++ Y++ + + F + Sbjct: 180 EFLSDENLVKTLKKRFNLYISTIEDKYFEIGYSKEKLKSYFSDHEICENEFDIYIN---- 235 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKT 317 A+ A + YI++TQ VN I + I+ + +D A R NLE+ T+ +R+ SLL Sbjct: 236 ASGALLEYIEQTQKVNLDHIQSFNKYRIEEYMVLDVATRRNLELTETMREKNRKGSLLWV 295 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D ++T GGR + I PL + I R ++N F ++ ++++LK D+ R Sbjct: 296 LDRTMTSMGGRTLRKWIEQPLINIYDIRDRHLAVNEFKDKFMVRMEVRELLKRVYDMERL 355 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 + ++ +G +D+ +++ I I + LK DL E L + + + + Sbjct: 356 MGKIVLGSANCRDLVSLKNSI-GQIPYIKELLK-DLNESLNKESNRNIDALADIFEIIDK 413 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + D+ P ++GG +++G + +D+ + K + L+ E+T IKNLK+ N Sbjct: 414 AICDEPPVSVKEGGIIKEGYNEEVDKLKRASVDGKTWLVELENSEREKTGIKNLKVGFNK 473 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY++EVT S S++ + +I +QT++N RF T EL +E+ + A + + + Sbjct: 474 VFGYYLEVTKSYFSLVPPN------YIRKQTLANCERFITEELKVIEDTVLGAEDKLVEL 527 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + F + N + + + ++ +A +D+ +LA +A ++Y P I+N + DG Sbjct: 528 EYQIFVEVRNKVAGEITRIKRTAKALAQVDVICSLAEVADRESYTMPEINNEDVIHITDG 587 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VEK + Q F+ ND L+ D+ + ++TGPNM GKST++RQ ALIV+MA Sbjct: 588 RHPVVEKMIDQGE---FVPNDTYLNMSEDQ----IAIITGPNMAGKSTYMRQVALIVLMA 640 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+GS+VPA A IGI D++F+RVG++D+LA+G+STFMVEM E A+IL+ AT++S +ILDE Sbjct: 641 QIGSFVPAKSAVIGIADRIFTRVGASDDLAAGQSTFMVEMSEVANILSNATSRSILILDE 700 Query: 738 IGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 IGRGT+T DGLSIAW+ IE++ + R R L ATH+HELT+L S+ N + V + Sbjct: 701 IGRGTSTYDGLSIAWSVIEHISDRKRIGARTLFATHYHELTELEGSIDGVKNYCISVEEK 760 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 E IIFL K+I G AD+SYGIQV +LAG+P VI+RA +ILK E D + Sbjct: 761 GEDIIFLRKIIRGGADNSYGIQVARLAGVPVPVINRAKEILKELE--------DADINKM 812 Query: 856 EIQTKESKNNLSKNDKLFVEKIKCLNLDE------------MSPLTALKTLY 895 E++ K +K + +F + +N DE ++PL AL LY Sbjct: 813 EVRLKRAKKPIEGQIDVFSFNTQQINSDEVLNELKNIDVSTLTPLDALNVLY 864 >gi|170727679|ref|YP_001761705.1| DNA mismatch repair protein MutS [Shewanella woodyi ATCC 51908] gi|238688717|sp|B1KPS7|MUTS_SHEWM RecName: Full=DNA mismatch repair protein mutS gi|169813026|gb|ACA87610.1| DNA mismatch repair protein MutS [Shewanella woodyi ATCC 51908] Length = 858 Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust. Identities = 324/889 (36%), Positives = 482/889 (54%), Gaps = 50/889 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 ++L+ TPMMRQY+ +K+ NPD L+FYRMGDFYELF+DDA AS LGI+LT RGK G Sbjct: 7 QDLEKHTPMMRQYLTLKAENPDVLLFYRMGDFYELFYDDAKKASELLGISLTARGKSGGD 66 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H Y+ KL+++ +AICEQ+ P +K V R VVRLVTPGTL Sbjct: 67 PIPMAGLPYHAVEGYLAKLVQLRVSVAICEQVGDPATSK-----GPVERKVVRLVTPGTL 121 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREII 198 T++ LL N L AV + + A +DIS+G F I+ + + L +++ R P E++ Sbjct: 122 TDEALLQERQDNLLAAVYHGKKGFGYATLDISSGRFVIAELESCEALEAELQRTSPAELL 181 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 +SE + S S FE +P FD S+ + D + + FG +++ Sbjct: 182 YSE-DFSEMSLISAFEGTRR----RPEWEFDFDTSQKLLLDQFGTKDLQGFGLDGARLSL 236 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA + Y+K TQ P I R + ++ +D+A R NLE+ L G +L Sbjct: 237 QAAGCLMQYVKDTQRTALPHINSIVRFNQGDSIILDAATRRNLELTMNLQGGHSNTLATV 296 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D + T G R+ I PL D +I R ++ ++N L + + +LKS DV R Sbjct: 297 LDNTTTPMGSRMLQRWIHEPLRDRQRIEARQSALEEILENG-LYDELHPLLKSLGDVERI 355 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 +RL + P+D + ++ + I + + L+ + + P+ L L S Sbjct: 356 TARLALRNARPRDFSRLKHALAILPEIQQILARCQ-SAHLQSLARIISEFPEEL-ALLDS 413 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + D+ P RDGG L+ G +A LD+ R L + +A L+ + E T I LK+ +N Sbjct: 414 AIVDNPPMLIRDGGVLKPGYNAELDQWRDLSQGATDYLAELEAREKEATGISTLKVGYNR 473 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IEV+ + ++ + RQT+ N R+ EL + E ++ ++ AL + Sbjct: 474 VHGYYIEVSRRESDLVPLS------YQRRQTLKNTERYIVAELKEHEEKVLSSQGKALAL 527 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + ++ L + I+ Q L +Q A +D+ A A NY RP++ + ++ G Sbjct: 528 EKQLWDQLFDLILPQLHELQLFAQGAAELDVLANFAERADTLNYQRPVLTDIPGIQIESG 587 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP++E Q S PFIAN LS + K+ ++TGPNMGGKST++RQ ALI +MA Sbjct: 588 RHPVIE----QVSQTPFIANPVTLS-----PARKMLIVTGPNMGGKSTYMRQVALITLMA 638 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +G YVPA A IG VD++F+R+G+AD+LASGRSTFMVEM ETA+IL+ AT +S V++DE Sbjct: 639 HIGCYVPAQSATIGPVDRIFTRIGAADDLASGRSTFMVEMTETANILHNATPKSLVLMDE 698 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGT+T DGLS+AW+ EYL + L ATH+ ELT L + + N L + + Sbjct: 699 IGRGTSTYDGLSLAWSAAEYLAQKIEAMTLFATHYFELTQLPELISNVANVHLDAIEHGD 758 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 I+F+H V G A SYG+QV LAG+PN VI A L E +HN Sbjct: 759 TIVFMHAVQDGAASKSYGLQVAALAGVPNPVILAAKHKLHHLESRDNHN----------- 807 Query: 858 QTKESKNNLSKNDKLFVEKIK--------CLNLDEMSPLTALKTLYAVK 898 T+++ ++ + +F + IK + DE+SP AL LY +K Sbjct: 808 -TQQTDSSGVQQSMVFPDPIKSPLEEAMESIRPDELSPKQALDILYRLK 855 >gi|299770825|ref|YP_003732851.1| DNA mismatch repair protein MutS [Acinetobacter sp. DR1] gi|298700913|gb|ADI91478.1| DNA mismatch repair protein MutS [Acinetobacter sp. DR1] Length = 879 Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust. Identities = 337/899 (37%), Positives = 501/899 (55%), Gaps = 52/899 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L + TPMM+QY+++K +L+FYRMGDFYELFF+DA LA++ LGITLT RGK G Sbjct: 9 DLSTHTPMMQQYLKVKKDYQHALLFYRMGDFYELFFEDAHLAAKLLGITLTHRGKANGNP 68 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM GVP H+A Y+ +L+K G +AICEQ+ + K V R VVR++TPGTLT Sbjct: 69 IPMAGVPYHSAEGYLARLVKAGRTVAICEQV------GEVTGKGPVDRKVVRILTPGTLT 122 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH--DRLISDIMRIDPREII 198 +D LLS S+ L+++ + + A +D+S GIFK+ ++ ++L ++ R+ P EI+ Sbjct: 123 DDALLSSYQSSNLVSLCIHQNQIGFALLDLSAGIFKVQQQDYKPEQLPIELARLMPSEIL 182 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 E + + + + L +PNV F+ + ++ + D + ++T+ FG + K Sbjct: 183 IDEDLVDTNIIEQIKKHLECPVTKRPNVDFNLNNAQKTLCDQFTVSTLSGFGLDPLPLAK 242 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFI--DSAARSNLEILRTLSGSREQSLL 315 AAAA I Y K+TQ P I + E QST FI D R NLEI+ L SL Sbjct: 243 AAAAALIHYAKETQKTALPHIRSIQLE--QSTDFIALDPITRRNLEIIEPLF-EHGTSLF 299 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 + ++ T GGRL + + P+ D+ ++ RLD+I IQ +P++ +LK D+ Sbjct: 300 QLVNDCQTAMGGRLLSRTLMQPVRDTALLDARLDAIEQLIQG-YHESPVRLVLKEIGDIE 358 Query: 376 RSLSRLKIGRGEPKDIAVIRDG------IRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 R LSR+ +G P+D+ +R +R+ + + K+ L +L + K L Q Sbjct: 359 RVLSRVALGSARPRDLVQLRHACAQIPALRTALTPVIQAKKSKLLVQLDQELGDFKALHQ 418 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 L + + ++ P RDG + +G DA LDE R +RD + + + L++K E T I Sbjct: 419 HL----MAAIVENPPVLLRDGNVIAEGYDADLDELRQIRDHAGQFLIDLEIKERERTGIN 474 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LKI +N GY+IE+T + A D +I RQT+ N R+ T EL E+++ + Sbjct: 475 TLKIGYNRVSGYYIELTRAQAEQAPAD------YIRRQTLKNAERYITPELKSFEDKVLS 528 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 + + AL E FE L + E L S IA ID+ A A+ N+ RP Sbjct: 529 SESRALAREKALFEALLENLRENIAHLQMMSSAIAQIDVVANFAHQARLNNWARPEFTPE 588 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 T ++ GRHP+VE K PF ND L + ++ ++TGPNMGGKSTF+RQ Sbjct: 589 TGIKIQAGRHPVVEALNK----APFTPNDTFLDAQH-----RMAIITGPNMGGKSTFMRQ 639 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI ++A GSYVPA A +G +D++F+R+GSAD+L++G+STFMVEM ET+ IL+ ATN Sbjct: 640 TALISLLAYCGSYVPAKTAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATN 699 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 QS V++DE+GRGT+T DGLS+AWA + L + +C L ATH+ ELT+L S N Sbjct: 700 QSLVLMDEVGRGTSTYDGLSLAWACVVDLTKRVKCLCLFATHYFELTELG-SEAGIDNYH 758 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 + + N +I LHKV G A S+G+QV KLAG+P VI A L+ EK Q Sbjct: 759 VTAQELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLRILEK--QQQQHL 816 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVE---------KIKCLNLDEMSPLTALKTLYAVKA 899 + ++ N+ S+ + VE +K + +D +SP AL+ LY +KA Sbjct: 817 QTSFQNDLFAPPDANSGSQIIEKVVEIEVSSPALDLLKQIEVDNLSPRQALEQLYELKA 875 >gi|116748176|ref|YP_844863.1| DNA mismatch repair protein MutS [Syntrophobacter fumaroxidans MPOB] gi|171460791|sp|A0LG76|MUTS_SYNFM RecName: Full=DNA mismatch repair protein mutS gi|116697240|gb|ABK16428.1| DNA mismatch repair protein MutS [Syntrophobacter fumaroxidans MPOB] Length = 889 Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust. Identities = 322/909 (35%), Positives = 497/909 (54%), Gaps = 50/909 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+EIK PD+L+ YRMGDFYE+F DDA+ AS L I LT R + IPMCG Sbjct: 5 TPMMQQYLEIKEKYPDALLLYRMGDFYEMFMDDAVTASGLLEIALTSRDRQSEVRIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A YI +L+ G ++AIC+Q+E P R K LVRR V R++TPG + + Q L Sbjct: 65 VPYHAAEGYIARLVSAGKKVAICDQVEDP-----RKAKGLVRREVTRVITPGLVLDAQNL 119 Query: 146 SPTDSNYLMAVAR--IRTEWAIAWIDISTGIFK-ISTSNHDRLISDIMRIDPREIIFSEK 202 + NYL AV+ + +A++D+ST FK + + + L+ +++R+ PRE++ S+ Sbjct: 120 AAKQPNYLAAVSNSTAGERFGLAFLDVSTAEFKMVEIESREALLEELIRVSPRELLLSDD 179 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAA 261 + H + L + G FD +E + ++ + +++ FG S + AA Sbjct: 180 D-EHPWAEELPKLYGIALTPLGADRFDGKRAEEALVGHFRVHSLEGFGISGMDLGIRAAG 238 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQSLLKTIDY 320 A ++Y++ + + I + +D A NLEI + S R+ SL+ +D Sbjct: 239 AILAYMQANLLGSCDHITRLLPYSRGDFMIVDEAGVRNLEIFHSQSFQGRKGSLIDILDE 298 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGR + + PL D +IN R ++I N + +L DV R R Sbjct: 299 TKTAMGGRKLQQWLRYPLLDLARINNRREAIAELAANAPMRGETLGLLSRISDVERLNGR 358 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEKLKKLPQSLEKTLSSM 438 G P+D+ ++ +++ + + P ELR + L + +E+TL Sbjct: 359 NSTGTSTPRDLVALKKSLQNLPALGAALAELTSPRLSELRARWDDLADVADIIERTLL-- 416 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 D P GG + G LD L +K +A +++ +T I +LK+++N Sbjct: 417 --DPPPPGLAAGGVISAGVSEELDHFVRLSRDAKGWMADYEVQQRRDTGISSLKVRYNKV 474 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IE+++++ + + + + +QT+ N RF T EL E ++ A L +E Sbjct: 475 FGYYIEISNANLNSVP------EHYFRKQTLVNAERFITEELKTFETQVLQAEEKRLELE 528 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F L I ++ + A+ IA +D ALA +A +YCRP++D S ++DGR Sbjct: 529 QQIFADLRARIAREAGRIQAAADRIADLDCVSALAEVACRYDYCRPVMDESDAIRIRDGR 588 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP++E LK + F+ ND D+ D+ ++ ++TGPNM GKST LRQ ALIV+M Sbjct: 589 HPVIEHYLKDGT---FVPNDLDM----DQRDQQVLVITGPNMAGKSTILRQAALIVLMGH 641 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPAS AHIG+VD++F+RVG++D+LA GRSTFMVEM ETA+IL+ AT +S +ILDEI Sbjct: 642 IGSFVPASEAHIGLVDRIFTRVGASDDLARGRSTFMVEMQETANILHHATPRSLIILDEI 701 Query: 739 GRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 GRGT+T DGLSIAWA E+LH+ + L ATH+HELT+L++S R N + + + Sbjct: 702 GRGTSTYDGLSIAWAVAEHLHDFQEKGIKTLFATHYHELTELARSRPRVRNFNVAIREWQ 761 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY----------HHN 846 + I+F HK++ G A SYGIQV +LAGLP V RA +IL+ E + Sbjct: 762 QEILFFHKLVQGGASRSYGIQVARLAGLPEEVTGRAREILQQLESGHAPFAAAPSGAARR 821 Query: 847 QKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTLEKYS 906 + R P IQ + ++ + ++I L+LD M+P+ AL+ L+A+K E+ Sbjct: 822 GRPAREKEPGIQM----SLFQRSPEWLRDRILALDLDNMTPIAALQNLHALK----EQIR 873 Query: 907 TDEDSEPLS 915 EP S Sbjct: 874 GSAGEEPAS 882 >gi|146297052|ref|YP_001180823.1| DNA mismatch repair protein MutS [Caldicellulosiruptor saccharolyticus DSM 8903] gi|172046026|sp|A4XL47|MUTS_CALS8 RecName: Full=DNA mismatch repair protein mutS gi|145410628|gb|ABP67632.1| DNA mismatch repair protein MutS [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 863 Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust. Identities = 317/896 (35%), Positives = 509/896 (56%), Gaps = 64/896 (7%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 ++ TPMM+QY+EIK D ++F+R+GDFYE+FFDDA++AS+ L I LT R + Sbjct: 1 MQELTPMMQQYMEIKQRVKDCILFFRLGDFYEMFFDDAIIASKELEIALTARDCGNNEKA 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A+ YI KLI+ G+++AICEQ+E P AK +V+R + R++TPGT + Sbjct: 61 PMCGVPYHSAHSYIAKLIEKGYKVAICEQVEDPKLAK-----GVVKREITRIITPGTFID 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD--RLISDIMRIDPREIIF 199 + +N++ VAR+ +++A+ ++DISTG +D ++I++I + P EI+ Sbjct: 116 ENF--SKANNFICCVARVESDFALTFVDISTGEMYACLIENDIQKMINEISKYAPSEILI 173 Query: 200 SE-----KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 S E+ Y S + + + + + D + + I D ++ + Sbjct: 174 SHLDNELYEVIRENYNSFVQRIEFIEIDRCYDLIDKQMQITNINDKVALSVGNLLNYLVD 233 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQS 313 +K + +YIKK + +Q+ L ID + + NLE+ ++ + S++ S Sbjct: 234 TQKIS----FNYIKKFEFYR-----------VQNYLQIDLSTKRNLELTESIIARSKKNS 278 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D + T G RL + + PL D +IN RLD++ N L+ I+ +L+ D Sbjct: 279 LFGILDQAKTSMGSRLIKKWLERPLIDVVEINRRLDAVEELYNNFPLLMQIEGLLEGIYD 338 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSL 431 + R S+ KD+ ++ I + L K+ L +EL ++ L + + Sbjct: 339 IERLSSKFAYKSINAKDLLSLKKSIEVLPRLKELLGEFKSPLLKELYNELDTL----EDV 394 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + S +++D P ++GG ++DG + +D R++ SK ++ + K T IKNL Sbjct: 395 YSLIDSSINEDAPVGLKEGGIIKDGFNDHVDRLRNISKNSKELLIQYEEKERNLTGIKNL 454 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 KI +N GY+IEVT S+ S++ +R+I +QT++N R+ T EL LE+ I NA Sbjct: 455 KIGYNKVFGYYIEVTKSNYSLVP------ERYIRKQTLANAERYVTEELKKLEDEIINAE 508 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + +E E F + + I Q E + + IAIID + A +A + Y +PI+ Sbjct: 509 QKLVELEYELFCQIRDKIESQIERIQKTASCIAIIDALCSFAHIAIDNRYTKPIVYLGDR 568 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 +K+GRHP+VEK + + F+ ND +L ND+N ++ ++TGPNM GKST++RQ A Sbjct: 569 IYIKNGRHPVVEKMIGYSN---FVPNDTELD--NDQN--RVLIITGPNMAGKSTYMRQVA 621 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LIVIMAQMG +VPA A IGIVDK+FSR+G++D+++SG+STFMVEM E A+IL AT +S Sbjct: 622 LIVIMAQMGCFVPAEEAQIGIVDKIFSRIGASDDISSGQSTFMVEMSEVANILKNATPKS 681 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNAT 789 +I DE+GRGT+T DGLSIAWA +E++ + ++ + L ATH+HELT+L + + N Sbjct: 682 LIIFDEVGRGTSTYDGLSIAWAVLEFVADKSKIGAKTLFATHYHELTELEEKISGVKNYR 741 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 + V + + IIFL K++ G D SYGI V +LAG+P V+ RA ILK E+ + ++ Sbjct: 742 VDVKEEGKNIIFLRKIVRGGCDSSYGIHVARLAGIPEEVLQRAEQILKKLEEADINRKEA 801 Query: 850 MRLYYPEIQTKESKNNLSKNDKLF-------VEKIKCLNLDEMSPLTALKTLYAVK 898 RL KE K ++ + F +EKI+ L++ ++P+ AL L +K Sbjct: 802 KRL------RKEIKREFTEQIEFFSYKKDEIIEKIENLDILNITPIQALNILSELK 851 >gi|167037586|ref|YP_001665164.1| DNA mismatch repair protein MutS [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116001|ref|YP_004186160.1| DNA mismatch repair protein MutS [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856420|gb|ABY94828.1| DNA mismatch repair protein MutS [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929092|gb|ADV79777.1| DNA mismatch repair protein MutS [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 867 Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust. Identities = 324/894 (36%), Positives = 510/894 (57%), Gaps = 62/894 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY++IK D+++F+R+GDFYE+F++DA +A++ L I LT R + PM G Sbjct: 4 TPMMEQYLKIKEKYKDAILFFRLGDFYEMFYEDAEIAAKELEIALTGRDAGTEERAPMAG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A+ YI KLIK G+++AICEQ+E P +AK LV+R+VVR+ TPGT+ + + Sbjct: 64 VPYHAADFYIDKLIKKGYKVAICEQLEDPAKAK-----GLVKRDVVRIYTPGTIINPESM 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHD---RLISDIMRIDPREIIFSE 201 +NYL++V + R + I +D++TG ++ N R+ +I + P EII +E Sbjct: 119 DEKTNNYLVSVFKGRDNYGICAVDVTTGDLYATELKNCKDIKRVYDEITKYAPSEIIANE 178 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 L + +Y +F+ N AV D+ I +N + + + A Sbjct: 179 DFLKNNKYIKIFKN-NNCAVNIYEKQLDYEEKIKLIETQFNKKSEELGIKDKPYMANSLA 237 Query: 262 AAISYIKKTQM-----VNKPTIGYPEREDIQSTLFIDSAARSNLEILRT-LSGSREQSLL 315 A SY+++ Q +NK I ED S + +DS A NLEIL + + S++ SLL Sbjct: 238 ALFSYLQELQKTALKHINKLLI----YED-NSYMGLDSNAIKNLEILESNRNKSKKGSLL 292 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D ++T GGRL + + PL I+ RL+++ + +++ L D+ Sbjct: 293 GVLDKTVTPMGGRLLKKWLEEPLLSKEHIDARLEAVEELFNDYKNRQDLKQFLNKIYDLE 352 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEE-----LRGAVEKLKKLPQS 430 R S++ PKD I+ +++ NL ++ E+ L+ EK L Q Sbjct: 353 RLASKIVYQSINPKDFISIK------LSLQNLPYIKEILEKFNSRLLKEICEKFDTL-QD 405 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 + + + + DD T ++G ++ G + +D+ R + K IA+L+ + E+T IKN Sbjct: 406 IYELIDKSIKDDPSTQLKEGNIIKGGYNEIVDKLRKASTEGKNWIANLEAEEREKTGIKN 465 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 L+I +N GY+IEVT S+ + +R+I +QT++N R+ T EL ++E I A Sbjct: 466 LRIGYNKVFGYYIEVTKSNIP------QVPERYIRKQTLANAERYVTPELKEIEETILGA 519 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 + +E + F + + Q + N ++ IA ID+ I+ A +A+ Y +PI+D S Sbjct: 520 EEKLIELEYQLFNEIREKVELQIVRIQNTAKYIATIDVLISFAEVAETNRYIKPIVDYSD 579 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 ++K+GRHP++E S + F+AND D+ N + ++TGPNM GKST++RQ Sbjct: 580 RIVIKEGRHPVIETI----SDESFVANDIDIGPEN-----PIMIITGPNMAGKSTYMRQV 630 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALIV+MAQ+GS+VPASYA IGIVDK+F+RVG++D++ +G+STFMVEM E A+IL AT++ Sbjct: 631 ALIVLMAQIGSFVPASYAKIGIVDKIFTRVGASDDIFAGQSTFMVEMSEVANILKSATSK 690 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S +ILDE+GRGT+T DG+SIA A IEY+HE + + L ATH+HELT L +K N + Sbjct: 691 SLIILDEVGRGTSTYDGMSIAHAVIEYIHEKIKAKTLFATHYHELTKLEGKMKGVRNYNV 750 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM 850 V + + IIFL K++PG AD SYGIQV KLAGLP +++ RA +IL + E N K + Sbjct: 751 SVEEREDDIIFLRKIVPGGADKSYGIQVSKLAGLPYSIVERAKEILNSLE-----NDKVI 805 Query: 851 RLYYPEIQTKESKNNLSKNDKL------FVEKIKCLNLDEMSPLTALKTLYAVK 898 + E++ + ++ D ++ I ++D M+P+ AL LY +K Sbjct: 806 K---SELENASQQLAFTQIDIFSTAKDSLIDDIANCDVDNMTPIQALNYLYELK 856 >gi|222529489|ref|YP_002573371.1| DNA mismatch repair protein MutS [Caldicellulosiruptor bescii DSM 6725] gi|254766611|sp|B9MJU0|MUTS_ANATD RecName: Full=DNA mismatch repair protein mutS gi|222456336|gb|ACM60598.1| DNA mismatch repair protein MutS [Caldicellulosiruptor bescii DSM 6725] Length = 863 Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust. Identities = 321/888 (36%), Positives = 510/888 (57%), Gaps = 48/888 (5%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 ++ TPMM+QY+EIK D ++F+R+GDFYE+FF+DA++AS+ L I LT R + Sbjct: 1 MQELTPMMQQYMEIKQKVKDCILFFRLGDFYEMFFEDAIVASKELEIALTSRDCGNNEKA 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A YI KLI+ G+++AICEQ+E P AK +V+R + R++TPGT + Sbjct: 61 PMCGVPYHSATSYIAKLIEKGYKVAICEQVEDPKLAK-----GIVKREITRIITPGTFID 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD--RLISDIMRIDPREIIF 199 D + T +N++ +++ R+E+A+ ++D+STG D +L+++I + P EI+ Sbjct: 116 DNI--STANNFICCISKDRSEFALTFVDVSTGEMYSCLLEEDLQKLVNEIGKYSPSEILI 173 Query: 200 SEKELSHAEYKSLFETLGN--VAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 S E L+E L + Q F D I + N+ +D EK Sbjct: 174 SNIE------DELYEFLKKNCTSFVQMIEFVDLQKCHEIIENQINVGKID--------EK 219 Query: 258 TAAAAA--ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSL 314 + + Y+ +TQ ++ I E +Q+ L ID + NLE+ ++ SR+ SL Sbjct: 220 LILSVGNLLKYLTETQKISFDYIRRFEFYRVQNYLQIDINTKRNLELTESIIQRSRKNSL 279 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D + T G RL + I PL D +IN RLDS+ N + ++++L D+ Sbjct: 280 LGILDQTKTSMGSRLLKKWIERPLIDIIEINKRLDSVEELKSNYSTLVQVEELLSRMYDI 339 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R S+ KD+ ++ I + L FL + E L+ E L L + + Sbjct: 340 ERLSSKFAYKNVNAKDLLSLKKSIEV-LPTLKQFLSSFDSELLKEIYEGLDTL-EDIYAL 397 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + S +++D P ++GG +++G + +D R++ SK ++ + K T IKNL+I Sbjct: 398 IDSSINEDAPVSLKEGGIIKEGFNEEVDRLRNISKNSKELLVEYEEKERNLTGIKNLRIG 457 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+IEVT S+ S++ DR+I +QT++N R+ T EL LE+ I A Sbjct: 458 YNKVFGYYIEVTKSNYSLVP------DRYIRKQTLANAERYITEELKKLEDEILGADQKL 511 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E + F + + I Q E + + IA +D+ + A +A + Y RP + + Sbjct: 512 IELEYQLFCEIRDRIEAQIERIQKTASNIANLDVLCSFARIAIDNEYVRPNVYLGDRIYI 571 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 K+GRHP+VEK + + + FI ND +L D+ ++ ++TGPNM GKST++RQ ALIV Sbjct: 572 KNGRHPVVEKMIGRGN---FIPNDTEL----DQAENRVLIITGPNMAGKSTYMRQVALIV 624 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMAQMG +VPA AHIG+VDK+FSR+G++D+++SG+STFMVEM E A+IL AT +S +I Sbjct: 625 IMAQMGCFVPADEAHIGVVDKIFSRIGASDDISSGQSTFMVEMSEVANILKNATPKSLII 684 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQV 792 DE+GRGT+T DGLSIAWA +EY+ + ++ + L ATH+HELT+L + + N + V Sbjct: 685 FDEVGRGTSTYDGLSIAWAVLEYVADKSKIGAKTLFATHYHELTELEERIPGVKNYRVDV 744 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 + + IIFL K++ G D SYGI V +LAG+P V+ RA +ILK E+ N+K++R Sbjct: 745 KEEGKNIIFLRKIVRGGCDSSYGIHVARLAGIPEEVLKRAEEILKQLEEA-DINRKNIRK 803 Query: 853 YYPEIQTK--ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 EI+ + E + S + ++KI+ L++ ++P+ AL L +K Sbjct: 804 LRREIKKEFTEQIDFFSYKKEEIIDKIEKLDILNITPIQALNILSELK 851 >gi|187734854|ref|YP_001876966.1| DNA mismatch repair protein MutS [Akkermansia muciniphila ATCC BAA-835] gi|187424906|gb|ACD04185.1| DNA mismatch repair protein MutS [Akkermansia muciniphila ATCC BAA-835] Length = 823 Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust. Identities = 316/833 (37%), Positives = 471/833 (56%), Gaps = 69/833 (8%) Query: 28 MMRQYIEIKSINP-DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGV 86 MM QY+ +K P D L+F+R+GDFYE+FF+DA AS LG+TLTKR IPMCGV Sbjct: 1 MMDQYLRMKKGLPEDVLLFFRLGDFYEMFFEDAKEASAILGLTLTKR-----HGIPMCGV 55 Query: 87 PVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLS 146 P H+A YI +L+K G R+AI EQ P K LV R + R+++ GTL + LL Sbjct: 56 PHHSAEGYIGRLVKGGKRVAIAEQTTIPQPGK------LVERELTRVISAGTLADMNLLD 109 Query: 147 PTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEKELS 205 + NY++A+ + + + +A +D +TG F ++ H D L+ ++ RI+P E++ S+ Sbjct: 110 SSRHNYIVALYKDKKRFGLACVDHTTGEFSVAQFEHMDLLLDELSRINPSELLVSD---- 165 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDH-----SISESRIADYYNITTVDTFGSFSQVEKTAA 260 E F P +++D S + + +++ + ++D FG A Sbjct: 166 --EQTDCFPG------THPTLYYDGYTFLPSTAIPNLLNHFRVHSLDGFGCGEMTAALGA 217 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTLSGSREQSLLKT 317 + A+ + Q+ +PT + R +++T + ID A++ NL+++ + G + SLL T Sbjct: 218 SGAVLHYLGYQL-RRPT-DHLRRISVRATENAVLIDQASQRNLDLVDSRGGVK-LSLLGT 274 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D + T G R + + PL D K+ R + I +Q P L++ +++ LK+ D+ R Sbjct: 275 LDRTSTPMGARKLRDWLLHPLCDLEKLLARQEVIAVLLQEPYLMSKLRESLKNVRDMERL 334 Query: 378 LSRLKIGRGEPKD----------IAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL 427 R+ G G +D I +RD + S L D+ E +R + +L Sbjct: 335 TGRISQGAGNARDLQALASSLARIPALRDDLES------LPGGGDMLESIRSRMGCFDEL 388 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 L++ L D+ P ++GG +R+G A LDE R K +A LQ K + T Sbjct: 389 VDLLQRALV----DEPPVTIKEGGIIREGYHAGLDELRLASRDGKEWLARLQEKERKRTG 444 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 I +LKI+ NN GY+IEVT S + D + K QT+ N RF T EL +EN I Sbjct: 445 IDSLKIRFNNVFGYYIEVTKSHYDKVPPDYQRK------QTLVNAERFITPELKQMENTI 498 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 A + +E E F +L + + + + +A +D+ + LA A++ YCRP++D Sbjct: 499 LGADERSRQVEYEQFLLLREEVGRHIDDIQITADAMADLDVLLGLAEGAQQYRYCRPVLD 558 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 NS + +GRHP++E+ + S F+ ND L + +L LLTGPNM GKST++ Sbjct: 559 NSMTLRIVNGRHPVIEQNV---SGDVFVPNDAFL----EPEENRLILLTGPNMAGKSTYI 611 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ ALI +MAQ+G+YVPA AHIG+VD++F RVG++D+LA G+STFMVEM ET+ ILN A Sbjct: 612 RQVALITLMAQIGAYVPAESAHIGLVDRIFCRVGASDDLARGQSTFMVEMSETSLILNNA 671 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 T +S +ILDEIGRGTAT DGLSIAWA EYLH+ + R L ATH+HELTDL+ S + N Sbjct: 672 TERSLIILDEIGRGTATFDGLSIAWAVAEYLHDELKSRTLFATHYHELTDLANSRQGVQN 731 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + V + E I+FL K++PG AD SYGIQV +LAG+P ++ RA IL E Sbjct: 732 YNVAVREWKEEIVFLRKIVPGAADKSYGIQVARLAGMPAVIVDRAKAILSHLE 784 >gi|269121342|ref|YP_003309519.1| DNA mismatch repair protein MutS [Sebaldella termitidis ATCC 33386] gi|268615220|gb|ACZ09588.1| DNA mismatch repair protein MutS [Sebaldella termitidis ATCC 33386] Length = 868 Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust. Identities = 313/892 (35%), Positives = 516/892 (57%), Gaps = 49/892 (5%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S TP+M+QY EIK + DS++F+R+GDFYE+FF DA+ AS+ LG+TLT R K G D+P+ Sbjct: 2 SETPLMKQYREIKENHQDSILFFRLGDFYEMFFQDAVTASKELGLTLTSRNKEKGMDVPL 61 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G+P H++ YI KL+ G+++AICEQ+E P R K +V+R VV++VTPGT+ + Sbjct: 62 AGIPYHSSASYITKLVNKGYKVAICEQVEDP-----RTVKGIVKREVVKIVTPGTVIDVD 116 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI----STSNHDRLISDIMRIDPREIIF 199 L T +NYL++V + + IA++DI+TG FK+ S++ + +++ +I+P+EI+ Sbjct: 117 SLDATSNNYLLSVKHLDNKTGIAYLDITTGEFKVLEIEDDSDYSKTFNELYKIEPKEILV 176 Query: 200 SEKELSHAE-YKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 E + E K F+ ++ + E+ + DY+NI ++++FG S ++ Sbjct: 177 ---EFNFYEALKDKFDDYSKKIDSKVTLVNKLRDPENFLTDYFNIVSLESFGISEAKAAV 233 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS---- 313 AA + Y Q+ + E +I + I+S R NLE+ R RE++ Sbjct: 234 HAAGMILDYALSMQVDGDLPLEKIEYINITNFAEINSTTRRNLELTRN---QREKTSYGT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D T G R + I +PL + +I R D + +F+ N ++ I++ L D Sbjct: 291 LLWVLDKCKTSMGTRFLKKIINNPLLEIEEIKKRQDDLQYFMDNILIREEIKEKLGEVYD 350 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R ++ +G KD+ ++ I S + I++ L E K L Q + Sbjct: 351 LERLAGKIVLGNENGKDLTALKKSIISSLEIMDF-----LRETAFFTGIDTKTLTQ-IRD 404 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + + +D P R+G ++ G + LDE + K + ++ + E T IKNLKI Sbjct: 405 IIEESIKEDAPFSIREGNIIKRGYNQELDEIFKIMSSGKDYLLEIEAREKERTGIKNLKI 464 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 K+N GYF+EV++S+ KDL +D +I +QT+SN R+ T EL + E++I N+ + Sbjct: 465 KYNKVFGYFLEVSNSN-----KDLVPED-YIRKQTLSNAERYITEELKEYEDKIINSKSK 518 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 IE F+ +S I E+ E L+ S+++A +D+ I+ A+ A E NY RP + Sbjct: 519 VEEIEYYLFKEISGKIKEKREVLNKLSEILAYLDVIISFAVTAIENNYVRPEFVDDYVIE 578 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +++GRHP+VEK + ++ F++N+ + G +LTGPNM GKST+++Q LI Sbjct: 579 IEEGRHPVVEKLIGRED---FVSNNVRMD-----REGNFIILTGPNMAGKSTYMKQIGLI 630 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 I+AQ+GSYVPA A + IVDK+ +R+G+AD++ SG+STFMVEM E ++I+N AT +S + Sbjct: 631 QILAQIGSYVPAQSARLSIVDKILTRIGAADDIVSGQSTFMVEMSEVSNIINSATERSLI 690 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ILDE+GRGT+T DG+SIA A EY+H+ + + + ATH+HELT+L + N ++V Sbjct: 691 ILDEVGRGTSTFDGISIATAITEYIHDKIKAKTIFATHYHELTELEEKFDSILNYRIEVE 750 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH-----NQK 848 + + ++FL K++ G AD SYGI+V +LAGLP V+ + IL+ EK N + Sbjct: 751 ERSNSVVFLRKIVRGGADKSYGIEVARLAGLPKEVLLNSKKILRGLEKRKELIEKTVNVE 810 Query: 849 DMRLYYPEIQTKESKNNLSKN--DKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L+ +E K NL ++ ++L + I+ ++++ ++P+ AL L +K Sbjct: 811 QLSLFAANDMVEEEKKNLKEDLYEELLFD-IENIDINNVTPMEALGLLGELK 861 >gi|170718184|ref|YP_001785210.1| DNA mismatch repair protein MutS [Haemophilus somnus 2336] gi|189030729|sp|B0UWV7|MUTS_HAES2 RecName: Full=DNA mismatch repair protein mutS gi|168826313|gb|ACA31684.1| DNA mismatch repair protein MutS [Haemophilus somnus 2336] Length = 859 Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust. Identities = 318/896 (35%), Positives = 488/896 (54%), Gaps = 64/896 (7%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 ++ TPMM+QY++IK+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG+ G+ Sbjct: 6 TFENHTPMMKQYLKIKAENPDVLLFYRMGDFYELFYDDAKKAAELLDISLTKRGQSAGQP 65 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 +PM GVP H Y+ KL+++G +AICEQ+ P+ AK V R VVR+VTPGT++ Sbjct: 66 VPMAGVPYHAIEGYLAKLVQLGESVAICEQVGEPVIAK-----GPVERQVVRIVTPGTVS 120 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIF 199 ++ LL N + + + +T++ +A +D+++G F+IS + L +++ RI P E+++ Sbjct: 121 DEALLPEKQDNLIATIYQEKTQFGLAVLDMTSGCFQISELQDAASLQAELQRIQPVELLY 180 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT- 258 SE E K L E + +P F+ S + + + + FG VEK Sbjct: 181 SEA----LEDKHLIEQFKGLR-RRPLWEFELSTAIQLLNRQFGTKDLRGFG----VEKAV 231 Query: 259 ----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSL 314 AA + Y K+TQ P I T+ ID++ R NLE+ + L+G E +L Sbjct: 232 LGLCAAGCLLQYAKETQRTALPHIQSISLLQNSDTVQIDASTRRNLELTQNLAGGTENTL 291 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 +D +T G RL I P+ + K+ R I +Q L+ +Q +L+ D+ Sbjct: 292 AAILDKCVTPMGSRLLKRWIHQPIRNIEKLQYRQQHIQMLLQQN-LVEELQPLLRQVGDM 350 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE-- 432 R L+R+ + P+D+ +R + E++ +L K+P + Sbjct: 351 ERILARVALRSARPRDLTRLRTAL----------------EQIPFIQHQLTKIPHFVAFS 394 Query: 433 ----------KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L + D+ P RDGG + +G + LDE RSL + + R + L+ + Sbjct: 395 QQIADFSVQLALLQRAIIDNPPLLIRDGGVIAEGYNEELDEWRSLSEGATRYLKDLEQRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 T I LKI N GY+I+++ A ++ ++ RQT+ N+ R+ EL Sbjct: 455 RANTGIDTLKIGFNAVHGYYIQISQGQAH------KAPLHYVRRQTLKNVERYIIPELKT 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E ++ A ++L +E + ++ + + ++ L AS +A +D+ LA A+ NY Sbjct: 509 YEEKVLKAKGASLALEKQLYDEIFDQLLPHLGDLQLASLTLAELDVLTNLAERAETLNYV 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 +P + GRHP+VE+ LK+ PFIAN +L N K L ++TGPNMGG Sbjct: 569 QPQFSTQVGLQIMQGRHPVVEQVLKE----PFIANPVEL---NQKR--HLLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+ Sbjct: 620 KSTYMRQTALITLMAYIGSFVPAESAVIGPIDRIFTRIGASDDLASGRSTFMVEMTEMAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+QAT QS V++DEIGRGT+T DGLS+AWA E L + R L ATH+ ELT L + + Sbjct: 680 ILHQATEQSLVLIDEIGRGTSTYDGLSLAWACAEQLAQKIRSLTLFATHYFELTGLPEKI 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + HN L + N+ I F+H V G A SYG+ V LAG+P VI A LK E L Sbjct: 740 EGIHNVHLDAFEHNDSIAFMHSVQEGAASKSYGLAVAALAGVPQNVIKSAKQKLKQLETL 799 Query: 843 YHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 N + ++Q + + +N +E +K L+ +E+SP AL+ LY +K Sbjct: 800 SQQNSYQSQSVLTQVQGELTLMEEEENTSAVIETLKTLDPNELSPKQALECLYQLK 855 >gi|312622277|ref|YP_004023890.1| DNA mismatch repair protein muts [Caldicellulosiruptor kronotskyensis 2002] gi|312202744|gb|ADQ46071.1| DNA mismatch repair protein MutS [Caldicellulosiruptor kronotskyensis 2002] Length = 863 Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust. Identities = 320/886 (36%), Positives = 509/886 (57%), Gaps = 44/886 (4%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 ++ TPMM+QY+EIK D ++F+R+GDFYE+FF+DA++AS+ L I LT R + Sbjct: 1 MQELTPMMQQYMEIKQKVKDCILFFRLGDFYEMFFEDAIVASKELEIALTSRDCGNNEKA 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A YI KLI+ G+++AICEQ+E P AK +V+R + R++TPGT + Sbjct: 61 PMCGVPYHSATSYIAKLIEKGYKVAICEQVEDPKLAK-----GIVKREITRIITPGTFID 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD--RLISDIMRIDPREIIF 199 D + T +N++ +++ R+E+A+ ++D+STG D +L+++I + P EI+ Sbjct: 116 DNI--STANNFICCISKGRSEFALTFVDVSTGEMYSCLLEEDLQKLVNEIGKYSPSEILI 173 Query: 200 SEKELSHAEYKSLFETLGN--VAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 S E L+E L + Q F D I + N+ +D S Sbjct: 174 SNIE------DELYEFLKKNCASFVQMIEFVDLQKCYEVIENQINVGKIDERLILS---- 223 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLK 316 + Y+ +TQ ++ I E +Q+ L ID + NLE+ ++ SR+ SLL Sbjct: 224 --VGNLLKYLIETQKISFDYIRRYEFYRVQNYLQIDINTKRNLELTESIIQRSRKNSLLG 281 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D + T G RL + I PL D +IN RLDS+ N ++ I+++L D+ R Sbjct: 282 ILDQTKTSMGSRLLKKWIERPLIDVIEINRRLDSVEQLKSNYSILVQIEELLSRMYDIER 341 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 S+ KD+ ++ I + L L + + L+ E L L + + + Sbjct: 342 LSSKFAYKNVNAKDLLSLKRSIEV-LPALKKLLSSFSAQLLKEIYEGLDTL-EDIYALID 399 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 S +++D P ++GG ++DG + +D R++ SK ++ + K T IKNL+I +N Sbjct: 400 SSINEDAPVTLKEGGIIKDGFNEEVDRLRNISKNSKELLVQYEEKERNLTGIKNLRIGYN 459 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+IEVT S+ S++ DR+I +QT++N R+ T EL LE+ I A + Sbjct: 460 KVFGYYIEVTKSNYSLVP------DRYIRKQTLANAERYITEELKKLEDEILGADQKLIE 513 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E + F + + I Q E + + IAI+D+ + A +A + Y RP + +K+ Sbjct: 514 LEYQLFCEIRDRIEAQIERIQKTASNIAILDVLCSFARIAIDNEYVRPNVYLGDRIYIKN 573 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VEK + + + FI ND +L D+ ++ ++TGPNM GKST++RQ ALIVIM Sbjct: 574 GRHPVVEKMIGRGN---FIPNDTEL----DQAENRVLIITGPNMAGKSTYMRQVALIVIM 626 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQMG +VPA A+IG+VDK+FSR+G++D+++SG+STFMVEM E A+IL AT +S +I D Sbjct: 627 AQMGCFVPADEAYIGVVDKIFSRIGASDDISSGQSTFMVEMSEVANILKNATPKSLIIFD 686 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 E+GRGT+T DGLSIAWA +EY+ + ++ + L ATH+HELT+L + + N + V + Sbjct: 687 EVGRGTSTYDGLSIAWAVLEYVADKSKIGAKTLFATHYHELTELEERIPGVKNYRVDVKE 746 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 + IIFL K++ G D SYGI V +LAG+P V+ RA +ILK E+ N+K++R Sbjct: 747 EGKNIIFLRKIVRGGCDSSYGIHVARLAGIPEEVLKRAEEILKQLEEA-DINRKNIRKLR 805 Query: 855 PEIQTK--ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 EI+ + E + S + ++KI+ L++ ++P+ AL L +K Sbjct: 806 KEIKKEFTEQIDFFSYKKEEIIDKIEKLDILNITPIQALNILSELK 851 >gi|134299738|ref|YP_001113234.1| DNA mismatch repair protein MutS [Desulfotomaculum reducens MI-1] gi|189030714|sp|A4J5Q6|MUTS_DESRM RecName: Full=DNA mismatch repair protein mutS gi|134052438|gb|ABO50409.1| DNA mismatch repair protein MutS [Desulfotomaculum reducens MI-1] Length = 868 Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust. Identities = 315/886 (35%), Positives = 499/886 (56%), Gaps = 49/886 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY++IK +P++++F+R+GDFYE+FF+DA LAS+ L ITLT R + +PMCG Sbjct: 4 TPMMQQYLDIKKQHPNTILFFRLGDFYEMFFEDAKLASQELEITLTGRDAGEPERVPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A+ YI KLI+ G+++AICEQ+E P + K +V+R V+R++TPGTL + +L Sbjct: 64 VPFHAADSYISKLIEKGYKVAICEQVEDP-----KVTKGIVKREVIRVITPGTLMDGSML 118 Query: 146 SPTDSNYLMAVARIRTE-WAIAWIDISTGIFKIS-TSNH---DRLISDIMRIDPREIIFS 200 S D+NYL+A+++ + +A D+STG+F+++ H + L+ +I+R+ PRE++ + Sbjct: 119 SEKDNNYLVAISQTSSNNCGMAVADLSTGLFQVTEMEGHWSLESLLDEILRLTPREVLLT 178 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS-FSQVEK-- 257 H + F L P+ F +++DY + + FG S V K Sbjct: 179 PDLKKHEKTVQAFNFL-------PSTVFTTLEETQQVSDYIELLN-NQFGQKVSAVYKDR 230 Query: 258 ----TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQ 312 AA + Y+ TQ I ++ + +D AR NLEI ++L G + Sbjct: 231 PAVCMAAGILLQYLINTQKRQLNHITEITAYSPRAYMMLDGIARRNLEISKSLRDGDKRG 290 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 +LL +D + T GGR+ + PL D+ KI RLD++ + + +L I LK Sbjct: 291 TLLWVLDATKTAMGGRMLKNWLEQPLIDTLKIQERLDAVEELVNSILLREEISGALKQIY 350 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE 432 D+ R +R G +D+ +R + + ++ L L+ + L L Sbjct: 351 DLERLAARAAYGSANGRDMIALRGSLEK-LPFIHDALAAVSSTRLKRIYTEFNTL-SDLR 408 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 K L L+++ P RDGG ++DG D +D+ R+ K +A L+ + E T IKNLK Sbjct: 409 KVLDLALAENPPVSLRDGGLIKDGFDQEVDQLRNAARDGKTWLAGLEAREKENTGIKNLK 468 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 + N GY++EVT ++ S++ + + RQT++N RF T EL + E+ I A + Sbjct: 469 VGFNKVFGYYLEVTRANLSMVP------EYYQRRQTLANAERFITPELKEYESMILGAED 522 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 + +E F + + + S+ + +++ ID ++LA +A + RP + ++ Sbjct: 523 RLVELEYNLFVAIRAKVAAEVSSIQKTAALLSEIDALVSLAEVAVRNGFVRPEVTDNGII 582 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 +KDGRHP+VE T Q F+ ND L D +L L+TGPNMGGKST+ RQ AL Sbjct: 583 EIKDGRHPVVENT---QGLGGFVPNDTYL----DIKEERLCLITGPNMGGKSTYQRQVAL 635 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 IV+MAQ+GS+VPA A IGIVD++F+RVG++D+L SG+STFMVEM ET I++ AT +S Sbjct: 636 IVLMAQVGSFVPAQRARIGIVDRIFARVGASDDLTSGQSTFMVEMYETKQIIDHATAKSL 695 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 VI+DE+GRGT+ L+G++IA + IE+LH+ CR L +TH+HEL +L L+ N V Sbjct: 696 VIIDELGRGTSNLEGMAIAQSVIEFLHDEVGCRTLFSTHYHELAELEGLLRGLKNYATAV 755 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 + + ++FL KV+ A SYG+ +LAGLP ++I RA +++ E H + + Sbjct: 756 KEQGDEVVFLRKVVRSKASKSYGVHCARLAGLPTSIIRRASELVMQLE---FHQRAAQEV 812 Query: 853 YYPEIQTKESKNNLS----KNDKLFVEKIKCLNLDEMSPLTALKTL 894 + Q + L+ + D++ E+I LNL M+PL +L L Sbjct: 813 VAGKTQIAAASEQLAMFTPQEDQV-KEEILALNLTNMTPLESLNFL 857 >gi|332140351|ref|YP_004426089.1| DNA mismatch repair protein(MutS) [Alteromonas macleodii str. 'Deep ecotype'] gi|327550373|gb|AEA97091.1| DNA mismatch repair protein(MutS) [Alteromonas macleodii str. 'Deep ecotype'] Length = 863 Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust. Identities = 318/893 (35%), Positives = 494/893 (55%), Gaps = 57/893 (6%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MMRQY+ IK+ +P+ L+FYRMGDFYELF+DDA A+ L I+LT RGK G+ IPM GVP Sbjct: 1 MMRQYLSIKAQHPNILLFYRMGDFYELFYDDAKKAAELLDISLTARGKSGGEPIPMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H Y+ +L+K+G +AICEQ+ P +K V R V R+VTPGT+T++ LL Sbjct: 61 YHAVESYLSRLVKMGESVAICEQVGDPATSK-----GPVERAVQRIVTPGTVTDEALLEE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREIIFSEKELSH 206 N L AV + +A +D+++G F + + D L+++I RI+P E+++ E Sbjct: 116 RRDNILAAVCGHSMHYGLATLDVTSGRFVVFECDSDESLLAEIQRINPAELLYPEG---- 171 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI-S 265 E SL E + +P FD + ++ + T+D FG + AA + Sbjct: 172 FESLSLVENRKGLR-RRPEWEFDVDTANEQLNAQFETKTLDGFGIKGVTKGLGAAGCVLQ 230 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y+K TQ P I + E S + +D+A R NLE+ LSG +E +L +D + T Sbjct: 231 YVKDTQRTALPHIRRIQTEQQDSRVQLDAATRRNLELTHNLSGGQENTLFSVMDTTTTAM 290 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINP--IQKILKSSPDVPRSLSRLKI 383 G R+ I SPLTD ++ +RLD+I+ FI + +P I+ LK D+ R ++RL + Sbjct: 291 GSRMLQRIIHSPLTDQHELQSRLDAIDTFIND----DPEDIRNALKHIGDIERIMARLAL 346 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 P+D A +++ + ++ + + D + +R E + P+ L+ L+S + D+ Sbjct: 347 RSARPRDFARLKNAFNALPDLQDALARFDTGQ-IRSIGETIGTYPE-LQALLNSAIIDNP 404 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P RDGG + +G +A LDE R L + + +++ + E T I LK+ +N G+FI Sbjct: 405 PVVIRDGGVIAEGYNAELDELRKLSQGATDYLDAMEQRERERTGISTLKVGYNKVHGFFI 464 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 E++ +++++ + +I RQT+ N R+ T EL + E+++ ++ +AL +E + +E Sbjct: 465 EISRANSALAPAE------YIRRQTLKNTERYITPELKEHEDKVLSSQGAALALEKQLYE 518 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L + L + +A +D+ A A ++ RP + GRHP+VE Sbjct: 519 ALFDNFAPYLNKLIETAAALAKLDVLCCFAERAVSLDWHRPKLSQECALTYDAGRHPVVE 578 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 +K PFIAN L ++ ++TGPNMGGKST++RQ ALI ++A +GSYV Sbjct: 579 NVMKD----PFIANPLQLDTER-----RMLVITGPNMGGKSTYMRQTALIALLACIGSYV 629 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA AHIG +D++F+R+G++D+LASGRSTFMVEM ETA+ILN AT S V++DEIGRGT+ Sbjct: 630 PAENAHIGKLDRIFTRIGASDDLASGRSTFMVEMTETANILNNATENSLVLMDEIGRGTS 689 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DGLS+AWA YL + L ATH+ ELT+L ++ N L + + I F+H Sbjct: 690 TYDGLSLAWACASYLAKQLNAYTLFATHYFELTELPETQAGVVNVHLNAMEFEDTIRFMH 749 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESK 863 V G A+ S+G+QV +LAG+P VI A L E + + R T +++ Sbjct: 750 TVSEGAANKSFGLQVAQLAGVPKPVIKAAQQKLAILESSHVMTSDESR----GSDTSQAQ 805 Query: 864 NNLSKN-----------DKLF-------VEKIKCLNLDEMSPLTALKTLYAVK 898 +N S+ + LF VE ++ L+ DE+SP AL +Y +K Sbjct: 806 SNTSRKIDNGSNAKGQAEMLFPDKPHPVVEALENLSPDELSPRQALDLIYTLK 858 >gi|225027641|ref|ZP_03716833.1| hypothetical protein EUBHAL_01900 [Eubacterium hallii DSM 3353] gi|224954955|gb|EEG36164.1| hypothetical protein EUBHAL_01900 [Eubacterium hallii DSM 3353] Length = 876 Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust. Identities = 327/899 (36%), Positives = 517/899 (57%), Gaps = 57/899 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD--IPM 83 TPMM QY +IK+ D ++FYR+GDFYE+F++DAL ASR L ITLT GK+ G++ PM Sbjct: 5 TPMMEQYFQIKNKYKDCILFYRLGDFYEMFYEDALTASRELEITLT--GKNCGQEEKAPM 62 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVP H+ YI KL++ G R+AICEQ+E P + K +V+R+V+R+VTPGT Q Sbjct: 63 CGVPFHSCEPYINKLVEKGFRVAICEQVEDP-----KAAKGIVKRDVIRVVTPGTNVMTQ 117 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEK 202 L + +N++M+V + I D+STG F+ + H D L ++ + P EII ++ Sbjct: 118 SLDESKNNFIMSVFCEDDLFGIGVCDLSTGEFRTTQVEHQDALFDEMNKFQPSEIICNDA 177 Query: 203 -ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG----SFSQVEK 257 + ++ + + +G V + +F+ E I + YN+ ++ G F + Sbjct: 178 FCICGMDFDFIKDKVGAVISPVASYYFEKDNCEMLIKEQYNLANLEGIGLTDYPFGVI-- 235 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQS 313 A+ A + Y+ +TQ K ++ + + ST + IDS+ R NLE+ TL ++ S Sbjct: 236 -ASGALLQYLHETQ---KNSLSHLMELKVYSTENYMVIDSSTRRNLELCETLREKGKKGS 291 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T G R+ + I PL T I RLD++ N + +++ + S D Sbjct: 292 LLWVLDKTKTAMGARMLRKMIEQPLIHKTAIQDRLDAVEMLKDNLMAREELREYMNSIYD 351 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE- 432 + R ++ P+D+ ++ I L ++K+ L + +G + K+ +LE Sbjct: 352 LERLTMKVSYRSANPRDLI----SFKTSIQYLP-YIKDILAQFSKGVLAKMAGDLDTLED 406 Query: 433 --KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 + L + + +D P ++GG +++G D +D + + K +A L+ + E+T IKN Sbjct: 407 LHELLEASIEEDPPIPIKEGGIIKEGFDEEIDHLKKAKTDGKTWLAELEEREREKTGIKN 466 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 L++++N GY+IEVT+S KDL + +I RQT++N R+TT EL +L I A Sbjct: 467 LRVRYNKVFGYYIEVTNSY-----KDL-VPEYYIRRQTLANAERYTTEELSELARTILGA 520 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 + +E E++ + + + E + + VIA D+ +LA++A+ Y RP ++ Sbjct: 521 EDRLYALEYETYVAIREKLAAEMERIQKTASVIAWTDVFASLALVAETNQYVRPTLNQRG 580 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 +KDGRHP+VEK + S + F+AND L D ++ ++TGPNM GKST++RQ Sbjct: 581 VIDIKDGRHPVVEKMM---SGELFVANDTLL----DHKKNRVDIITGPNMAGKSTYMRQT 633 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALIV+MAQ+GS+VPA A+IG+VD++F+RVG++D+LASG+STFMVEM E A+IL AT Sbjct: 634 ALIVLMAQIGSFVPAKSANIGLVDRIFTRVGASDDLASGQSTFMVEMSEVANILRHATKD 693 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHET--NRCRGLLATHFHELTDLSKSLKRFHNA 788 S +ILDEIGRGT+T DGLSIAWA +EY+ + + + L ATH+HELT+L L +N Sbjct: 694 SLLILDEIGRGTSTFDGLSIAWAVVEYIAGSSLSGAKTLFATHYHELTELEGKLPGVNNY 753 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL-YHHNQ 847 + V + + IIFL K+I G AD SYGIQV KLAG+P VI RA +I E+ N Sbjct: 754 CIAVQEKGDTIIFLRKIIKGSADKSYGIQVAKLAGVPEVVIERAKEIAAELEESDITANT 813 Query: 848 KDMRLYYPE------IQTKESKNNLSKNDKL--FVEKIKCLNLDEMSPLTALKTLYAVK 898 K++ + E I ++ +++ K E +K L++ M+P+ A+ LY ++ Sbjct: 814 KNIGKKHTEEVEPVQISLFDTMGMVAEQPKKSEVEETLKKLDISNMTPMEAMNQLYELQ 872 >gi|268317098|ref|YP_003290817.1| DNA mismatch repair protein MutS [Rhodothermus marinus DSM 4252] gi|262334632|gb|ACY48429.1| DNA mismatch repair protein MutS [Rhodothermus marinus DSM 4252] Length = 898 Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust. Identities = 316/830 (38%), Positives = 479/830 (57%), Gaps = 31/830 (3%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E TP+MRQY +IKS P++++ +RMGDFYE F +DA + SR LGITLTKR Sbjct: 7 EKQVGQTPLMRQYYKIKSRYPNAILLFRMGDFYETFDEDAHIVSRVLGITLTKRSNGQAA 66 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 D+P+ G P H ++Y+ KL++ G+R+AICEQ+E P A+K + VV +VTPG Sbjct: 67 DVPLAGFPHHALDNYLPKLVRAGYRVAICEQLEDPKFARKVVKRD-----VVEVVTPGVS 121 Query: 140 TEDQLLSPTDSNYLMAVA-----RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDP 194 + LL P +NYL AV R A++D STG F ++ + RL + I P Sbjct: 122 FHEHLLDPKRANYLAAVVWGTERGERDRIGFAFLDASTGEFSVTEAPAHRLEDLLQTIQP 181 Query: 195 REIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS- 253 E++ +++ + L V Q + F + + ++ ++ FG Sbjct: 182 AEVLVDKRQRDRLQG---VRGLSFVVTPQEDWVFSFDYAYEVLLRHFKTHSLKGFGVDDL 238 Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQ 312 ++ AA AA+ Y+ +TQ P + R + +D + NLE++ +L G++E Sbjct: 239 RLGLQAAGAALHYLGETQKGRLPHVRRLTRYVTDEYMVLDPQTKRNLELVASLQDGTQEG 298 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 SL++ +D ++T GGRL + PL + +I RLD++ +++ L +++ L+ Sbjct: 299 SLVQILDETLTPMGGRLLRRWLLRPLKNVRQIEKRLDAVEALVRDRRLRERLREELRQVG 358 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE 432 D+ R +R+ GR P+D+ +R + I + L + + LR E+L Q +E Sbjct: 359 DLERLAARVCTGRATPRDLMHLRLTLEQ-IPPIKQVLADVSCDTLRRLAEQLTLCTQVVE 417 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 + + L DD P DGG +RDG A LDE R + K IA LQ K E T I +LK Sbjct: 418 R-IRQALVDDPPASLSDGGVIRDGFSAELDELREIARSGKDFIARLQQKEIERTGIPSLK 476 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 + N GY+IEVT++ + + +I +QT+ N R+ T EL + E +I +A Sbjct: 477 VGFNKVFGYYIEVTNAHRNKIPP------HYIRKQTLVNAERYITPELKEYEEKILSAEE 530 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 +E E F L + E + L + ++A++D+ +LA +A Y RP + T Sbjct: 531 KIASLEAELFNRLRLEVAEATAELQLNASLLAMLDVFCSLAEVADRYGYTRPELHEGTEL 590 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 ++++GRHP+VE+TL +PFI ND L D ++ ++ ++TGPNM GKS LRQ L Sbjct: 591 LIEEGRHPVVERTLP--PGEPFIPNDIYL----DTHAQQILIITGPNMAGKSVVLRQTGL 644 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 IV++AQ+GS+VPA A IGIVD++F+RVG++DNLA+G STF+VEM ETA+ILN AT +S Sbjct: 645 IVLLAQIGSFVPARRARIGIVDRIFTRVGASDNLAAGESTFLVEMNETANILNNATPRSL 704 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATL 790 ++LDE+GRGT+T DGLSIAWA +EYLHET R L ATH+HEL +L++ R N + Sbjct: 705 ILLDEVGRGTSTFDGLSIAWALVEYLHETPSVAARTLFATHYHELNELAERFPRVKNFRV 764 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 QV + + +IFLHK++PG ADHSYGI+V ++AGLP VI+RA +IL+ E Sbjct: 765 QVEEHDGRVIFLHKLVPGGADHSYGIEVARMAGLPEPVIARAREILRHLE 814 >gi|90408946|ref|ZP_01217080.1| DNA mismatch repair protein [Psychromonas sp. CNPT3] gi|90309947|gb|EAS38098.1| DNA mismatch repair protein [Psychromonas sp. CNPT3] Length = 852 Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust. Identities = 325/883 (36%), Positives = 496/883 (56%), Gaps = 42/883 (4%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 + LK TPMM+Q++ IKS PD+L+FYRMGDFYE+FFDDA S+ LGI+LT+RGK G Sbjct: 6 QELKKHTPMMQQFLTIKSEVPDTLLFYRMGDFYEMFFDDARKVSQLLGISLTQRGKTGGN 65 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H+ Y+ KL+ +G +AICEQI P +K V R +VR++TPGT+ Sbjct: 66 AIPMAGVPYHSVEGYLGKLLALGESVAICEQIGDPATSK-----GPVDRKIVRIITPGTI 120 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREII 198 T++ LL N L A+ + + + IA +DIS+G F I+ H+ L +++ R++P E++ Sbjct: 121 TDEALLDDRQDNLLCALYQQQNNFGIASLDISSGRFVINQFQHEETLQAELQRLNPAELL 180 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 + E E L E L + +P FD + + ++ + FG ++ Sbjct: 181 YVET----FEALHLIEHLPSTR-RRPEWEFDLGTARKTLNQQFSTQDLVGFGVDKAEFAL 235 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA A + YIK TQ + P + + E T+ +D+A R NLE+ + LSG + +L + Sbjct: 236 CAAGALLQYIKDTQRTSLPHLQSIKLEQTIDTVILDAATRKNLELTQNLSGGTDHTLAQI 295 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D S+T G RL I P+ + +N R I I + L N + + LK D+ R Sbjct: 296 LDVSVTPMGSRLLKRWIHQPIRNVNILNYRQTMIQTLI-DLDLCNALAEPLKQIGDIERV 354 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVE-KLKKLPQSLEKTLS 436 ++RL + P+D+ +R + NL +LP EL + ++ P+ L L Sbjct: 355 IARLALRSARPRDLTRLRSAFALLPELQNLL--AELPHELVHKLSTEMGNYPELL-TLLE 411 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + + D+ P RDGG + G ++ LDE R+L + + L+++ E T I LK+ +N Sbjct: 412 NAIIDNPPVIIRDGGVIAPGYNSELDEWRNLAKGATDYLKELEIRERESTGISTLKVGYN 471 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+IE + +A + ++ RQT+ N R+ EL + E+++ + AL Sbjct: 472 RVHGYYIETSRHAADAVPA------HYVRRQTLKNTERYIIAELKEHEDKVLVSQGKALA 525 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E + + L ++ ++L +Q +A +D+ LA A NY RP + I+ D Sbjct: 526 LEKKLYAQLIEQLLPYLKALQFTAQSLAELDVLNTLAERALTLNYVRPTLSPDRGIIITD 585 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE Q + PFIAN L+ +D+ ++ ++TGPNMGGKST++RQ ALIV+M Sbjct: 586 GRHPVVE----QVNKTPFIANPVALA--DDR---RMLIITGPNMGGKSTYMRQVALIVLM 636 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A +GS++PA A IG VD++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V++D Sbjct: 637 AHIGSFIPAQSATIGPVDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLVLMD 696 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DGLS+AWA E L + L ATH+ ELT L +++K N L ++ Sbjct: 697 EIGRGTSTFDGLSLAWACAEELALKIQAYTLFATHYFELTALPETIKEVVNVHLDAAEDG 756 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH-NQKDMRLYYP 855 + IIFLH V G A+ SYG+QV LAG+P+ V+ A L+ E ++ N L P Sbjct: 757 DNIIFLHAVHDGAANKSYGLQVAALAGVPSRVVKNAKRKLQQLELTSNNTNITAQTLMTP 816 Query: 856 EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + +E + +K +N DE+SP AL LY +K Sbjct: 817 VEEVEEDGVH---------RLLKQINPDELSPKQALALLYQLK 850 >gi|238921110|ref|YP_002934625.1| DNA mismatch repair protein MutS [Edwardsiella ictaluri 93-146] gi|259511166|sp|C5BGI4|MUTS_EDWI9 RecName: Full=DNA mismatch repair protein mutS gi|238870679|gb|ACR70390.1| DNA mismatch repair protein MutS, putative [Edwardsiella ictaluri 93-146] Length = 852 Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust. Identities = 316/885 (35%), Positives = 484/885 (54%), Gaps = 44/885 (4%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +NL + TPMM+QY+ +K+ +PD L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 DNLDAHTPMMQQYLRLKAQHPDILLFYRMGDFYELFYDDARRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H +Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGVPYHAVENYLAKLVQLGESVAICEQIGDPA-----ASKGPVERKVVRIVTPGTV 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LLS N L A+ + + A +DIS+G F+ + + D + +++ R +P E++ Sbjct: 120 SDEALLSERQDNLLAAIWQSPNGFGYATLDISSGRFRAAEPQDADSMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + E+ S A L E + +P F+ + ++ + + FG Q + Sbjct: 180 YPEEFTSMA----LIEQRRGLR-RRPMWEFELETARQQLNLQFGTRDLSGFG-VEQAPQA 233 Query: 259 --AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 AA + Y K TQ P I E Q + +D+A R NLE+ + L+G +E +L Sbjct: 234 LRAAGCLLQYAKDTQRTMLPHIRAITMERQQDGIIMDAATRRNLELTQNLAGGQENTLAA 293 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D S+T G R+ + P+ D + R D+I + LI+ +Q +L+ D+ R Sbjct: 294 VLDASVTAMGSRMLKRWLHMPIRDRQALQRRQDAIEALLP---LIDDLQPLLRQVGDLER 350 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 L+RL + P+D+A +R + + L L E L + + +L + L Sbjct: 351 ILARLALRSARPRDLARMRVAFQQ-LPTLQTLLGERGSEALAPLARQAGRF-DALCELLE 408 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 L + P RDGG + G A LDE R+L D + + L+++ E+ + LK+ N Sbjct: 409 RALVETPPVLVRDGGVIASGYHAELDEWRALADGASDYLDRLEVREREKLGLDTLKVGFN 468 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+I+V+ + ++ ++ RQT+ N R+ EL + E+++ + AL Sbjct: 469 AVHGYYIQVSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSKGKALA 522 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E + ++ L + ++ +L ++ +A +D+ LA A Y RP + T + + Sbjct: 523 LEKQLYDELFDLLLPHLAALQQSATALAELDVLSGLAERADRYGYVRPQLSERTGINIDE 582 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE+ L++ PFIAN LS + ++ ++TGPNMGGKST++RQ ALIV+M Sbjct: 583 GRHPVVEQVLRE----PFIANPLTLS-----GARRMLVITGPNMGGKSTYMRQAALIVLM 633 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A +GS+VPA A IG VD++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V++D Sbjct: 634 AHIGSFVPAQRAVIGPVDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEHSLVLMD 693 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DGLS+AWA E L + L ATH+ ELT L + L+ +N L + Sbjct: 694 EIGRGTSTYDGLSLAWACAESLASRIKAMTLFATHYFELTTLPEKLEGVYNVHLDALEHG 753 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR--LYY 854 E I F+H V G A SYG+ V LAG+P VI RA L+ E L H + Sbjct: 754 ETIAFMHSVQDGAASKSYGLAVAALAGVPREVIKRARQKLRELETLSQHGNQSQADGAQL 813 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 P + E L E + ++ D ++P AL LY +K Sbjct: 814 PLLVEAEPSAAL--------EALTAIDPDVLTPRQALDWLYRLKG 850 >gi|312127451|ref|YP_003992325.1| DNA mismatch repair protein muts [Caldicellulosiruptor hydrothermalis 108] gi|311777470|gb|ADQ06956.1| DNA mismatch repair protein MutS [Caldicellulosiruptor hydrothermalis 108] Length = 863 Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust. Identities = 319/886 (36%), Positives = 510/886 (57%), Gaps = 44/886 (4%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 ++ TPMM+QY+EIK D ++F+R+GDFYE+FF+DA++AS+ L I LT R + Sbjct: 1 MQELTPMMQQYMEIKQKVRDCILFFRLGDFYEMFFEDAIVASKELEIALTSRDCGNNEKA 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A YI KLI+ G+++AICEQ+E P AK +V+R + R++TPGT + Sbjct: 61 PMCGVPYHSATSYIAKLIEKGYKVAICEQVEDPKLAK-----GIVKREITRIITPGTFID 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD--RLISDIMRIDPREIIF 199 + L T +N++ +++ R+E+A+ ++D+STG D +L+++I + P EI+ Sbjct: 116 ENL--STANNFICCISKDRSEFALTFVDVSTGEMYSCLLEEDLQKLLNEIGKYSPSEIL- 172 Query: 200 SEKELSHAEYKSLFETLGN--VAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 +SH E L+E L + Q F D I + N+ +D S Sbjct: 173 ----ISHIE-DELYEFLKKNCASFVQMIEFVDLQKCYEVIENQINVGKIDERLILS---- 223 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLK 316 + Y+ +TQ ++ I E +Q+ L ID + NLE+ ++ S++ SLL Sbjct: 224 --VGNLLKYLTETQKISFDYIRRFEFYRVQNYLQIDINTKRNLELTESIIQRSKKNSLLG 281 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D + T G RL + I PL D +IN RLDS+ N + ++++L D+ R Sbjct: 282 ILDQTKTSMGSRLLKKWIERPLIDVIEINRRLDSVEELKSNYSTLVQVEELLSRMYDIER 341 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 S+ KD+ ++ I + L L + + L+ E L L + + + Sbjct: 342 LSSKFAYKNVNAKDLLSLKRSIEV-LPALKKLLSSFSAQLLKEIYEGLDTL-EDIYALVD 399 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + +++D P ++GG ++DG + +D R++ SK ++ + K T IKNL+I +N Sbjct: 400 NSINEDAPVTLKEGGIIKDGFNEEVDRLRNISKNSKELLVQYEEKERNLTGIKNLRIGYN 459 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+IEVT S+ S++ DR+I +QT++N R+ T EL LE+ I A + Sbjct: 460 KVFGYYIEVTKSNYSLVP------DRYIRKQTLANAERYITEELKKLEDEILGADQKLIE 513 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E + F + + I Q E + + IAI+D+ + A +A + Y RP + +K+ Sbjct: 514 LEYQLFCEIRDRIEAQIERIQKTASYIAILDVLCSFARIAIDNEYVRPNVYLGDRIYIKN 573 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VEK + + + FI ND +L D+ ++ ++TGPNM GKST++RQ ALIVIM Sbjct: 574 GRHPVVEKMIGRGN---FIPNDTEL----DQAENRVLIITGPNMAGKSTYMRQVALIVIM 626 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQMG +VPA AHIGIVDK+FSR+G++D+++SG+STFMVEM E A+IL AT +S ++ D Sbjct: 627 AQMGCFVPADEAHIGIVDKIFSRIGASDDISSGQSTFMVEMSEVANILKNATPKSLIVFD 686 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 E+GRGT+T DGLSIAWA +EY+ + ++ + L ATH+HELT+L + + N + V + Sbjct: 687 EVGRGTSTYDGLSIAWAVLEYVADKSKIGAKTLFATHYHELTELEERIPGVKNYRVDVKE 746 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 + IIFL K++ G D SYGI V +LAG+P V+ RA +ILK E+ N+K++R Sbjct: 747 EGKNIIFLRKIVRGGCDSSYGIHVARLAGIPEEVLKRAEEILKQLEEA-DINRKNIRKLR 805 Query: 855 PEIQTK--ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 EI+ + E + S + ++KI+ L++ ++P+ AL L +K Sbjct: 806 KEIKKEFTEQMDFFSYKKEEIIDKIEKLDILNITPIQALNILSELK 851 >gi|88858313|ref|ZP_01132955.1| DNA mismatch repair protein [Pseudoalteromonas tunicata D2] gi|88819930|gb|EAR29743.1| DNA mismatch repair protein [Pseudoalteromonas tunicata D2] Length = 859 Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust. Identities = 319/907 (35%), Positives = 507/907 (55%), Gaps = 68/907 (7%) Query: 8 PQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLG 67 P L+SE + TPMM+QY+ IK+ + D L+FYRMGDFYELFFDDA A++ L Sbjct: 2 PLDLFSEH-----TISQQTPMMQQYLRIKAEHRDILLFYRMGDFYELFFDDAKRAAQLLD 56 Query: 68 ITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVR 127 I+ T RG+ G IPM GVP H +Y+ +L+++G +AICEQI P +K V Sbjct: 57 ISQTHRGRAGGAPIPMAGVPYHAVENYLARLVQMGESVAICEQIGDPATSK-----GPVE 111 Query: 128 RNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRT-EWAIAWIDISTGIFKISTSNHDRLI 186 R VVR++TPGT++++ LL N L A+ + + IA++DI++G F ++ +N + Sbjct: 112 RKVVRIITPGTISDEALLKERQDNLLTAIYLAKEGTFGIAYLDINSGRFYLTQANTEESC 171 Query: 187 SDIM-RIDPREIIFSEKELSH---AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYN 242 I+ RI P E+++ E + + YK + +P FD + + + + + Sbjct: 172 HSILQRIQPAELLYPENFTAMHLISSYKG--------SRRRPEWEFDLNTASTILCQQFE 223 Query: 243 ITTVDTFGSFSQVEK-TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLE 301 + FG E AA + Y+K TQ + P I E + + +D+A R NLE Sbjct: 224 TKDLIGFGVQDAHEALIAAGCLMQYVKDTQRIALPHINAIALEQNELHVILDAATRKNLE 283 Query: 302 ILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILI 361 + LSG + +L + +D + T G RL R+ +P D ++N RLD+++ I N L Sbjct: 284 LTINLSGDIDNTLAQVLDKTATPMGSRLLKRRLHTPTRDHNELNARLDAVSE-IMNCGLF 342 Query: 362 NPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLK---NDLPEELR 418 N +LK D+ R ++RL + P+D++ +R+ ++ + NL N L + Sbjct: 343 NDFYDVLKQIGDIERIVARLALRSARPRDLSRLRNALQQLHLVQNLLAHTSSNRLSD--- 399 Query: 419 GAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASL 478 +++ + ++ L + ++ P RDGG + G A LDE R+L + I+ +L Sbjct: 400 --IKRASAVIPHIQSLLEQAIIENPPVLIRDGGVIAPGYHAELDEWRALSQGATDIVEAL 457 Query: 479 QLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTL 538 + K E T I LKI +N G++IEV+ + A + + +I RQT+ N R+ Sbjct: 458 EAKERERTGIATLKIGYNRVHGFYIEVSRAYADQVPPE------YIRRQTLKNNERYIIP 511 Query: 539 ELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKE 598 EL + E+++ + + AL +E + +E L + ++ + + ++ +D+ A A+ Sbjct: 512 ELKEHEDKVLGSQSKALALEKQLYEGLFDQLLPHLKQFQQLAASLSELDVINNFAERAET 571 Query: 599 QNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGP 658 NYCRP + ++ + + +GRHP+VE + S+PFIAN L+ + K+ ++TGP Sbjct: 572 LNYCRPTLIDNQDITIVEGRHPVVEHVM----SEPFIANPTHLA-----PTRKMLIITGP 622 Query: 659 NMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMI 718 NMGGKST++RQ ALIV++A +G +VPAS A+IGIVD++F+R+G++D+LASGRSTFMVEM Sbjct: 623 NMGGKSTYMRQTALIVLLAHVGCFVPASQANIGIVDRIFTRIGASDDLASGRSTFMVEMT 682 Query: 719 ETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDL 778 ETA+ILN AT S V++DEIGRGT+T DGLS+AWAT EYL + L ATH+ ELT+L Sbjct: 683 ETANILNNATQHSLVLMDEIGRGTSTYDGLSLAWATAEYLAHKISAKTLFATHYFELTEL 742 Query: 779 SKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKT 838 ++ + N L + N+ I F H V+ G A S+G+QV LAG+P +VI +A L+ Sbjct: 743 AEQVPGLVNVHLDAIEHNDTIAFKHTVLDGPASKSFGLQVAALAGVPKSVIKQAKQKLRL 802 Query: 839 FEK---LYHHNQKDM----RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTAL 891 E+ + + Q D+ + PEI E+ ++ +N DE++P AL Sbjct: 803 LEQHQLVNNSGQFDLLTQATVNLPEISEVET-------------QLAAINPDELTPKEAL 849 Query: 892 KTLYAVK 898 LY +K Sbjct: 850 ALLYRLK 856 >gi|237809472|ref|YP_002893912.1| DNA mismatch repair protein MutS [Tolumonas auensis DSM 9187] gi|237501733|gb|ACQ94326.1| DNA mismatch repair protein MutS [Tolumonas auensis DSM 9187] Length = 865 Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust. Identities = 307/881 (34%), Positives = 498/881 (56%), Gaps = 35/881 (3%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 ++L + TPMM+QY+ +K+ +PD L+FYRMGDFYELF+DDA A+ L I+LTKRG+ G+ Sbjct: 9 QSLTTHTPMMQQYLGLKAQHPDILLFYRMGDFYELFYDDARKAAELLDISLTKRGQSAGQ 68 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H Y+ +L+++G +AICEQI P +K V R VVR++TPGTL Sbjct: 69 PIPMAGVPYHAVEGYLSRLVQLGESVAICEQIGDPATSK-----GPVERKVVRIITPGTL 123 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREII 198 T++ LL+ N ++AV + + +A +D+++G F I+ + + L +++ R++P E++ Sbjct: 124 TDEALLNERQDNLIVAVDFVAPHYGLAAMDVASGRFVINQFTRQETLAAELQRLNPAELL 183 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 +SE + + L + G +P F+ S S + + + + FG ++ Sbjct: 184 YSE---NFPDLTQLGQRRG--MRRRPAWEFEFSTSYHLLCNQFETQDLRGFGVEEEKIAL 238 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA A + Y++ TQ P I E + + +D+A R NLE+ LSG + +L Sbjct: 239 QAAGALLQYVRDTQRTALPHIQGIRLEKSEQMVVMDAATRRNLELTGNLSGGFDNTLAAV 298 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D + T G RL + P+ ++ R D I + ++ + + +LK DV R Sbjct: 299 LDATATPMGSRLLKRWLHQPIRSKNQLQQRQDVITELLDQQMM-SALMPVLKQIGDVERI 357 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 ++RL + P+D++ +R + + + N ++L A+ +L + LE+ + Sbjct: 358 IARLALRSARPRDLSRLRVAFQQLPELQIILQNNPTLQQLAQAISTFPELQELLERAVV- 416 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 ++ P RDGG + G LDE R L + + R + L+L+ + T I LK+ +N Sbjct: 417 ---ENPPVVLRDGGVIASGYHPELDELRDLENGATRYLEQLELRERQRTGITTLKVSYNK 473 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 G++I+VT ++A ++ D +I RQT+ N R+ EL + E+++ A + AL + Sbjct: 474 VHGFYIDVTKANAHLVPVD------YIRRQTLKNNERYLIPELKEYEDKVLTAQSRALAL 527 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + +E L + ++ +L ++ +A +D+ LA A+ +Y RP + + +K G Sbjct: 528 EKQLYEDLLDQLLPHLPALQVSAAAVAELDVLNNLAERAQTLDYHRPELVDEPGIQIKAG 587 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE++L+ PFIAND L ND ++ ++TGPNMGGKST++RQ ALIV++A Sbjct: 588 RHPVVEQSLQ----TPFIANDLQL---NDLR--RMLIITGPNMGGKSTYMRQTALIVLLA 638 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT+QS V++DE Sbjct: 639 YIGSYVPAEAARIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATHQSLVLMDE 698 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGT+T DGLS+AWA E L + L ATH+ ELT L++ N + + Sbjct: 699 IGRGTSTYDGLSLAWACAEQLAQKINAYTLFATHYFELTQLAEQQANIVNVHFDAIEHGD 758 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 + F+H V G A+ SYGIQV LAG+P VI++A L E H+ Sbjct: 759 SVAFMHTVQEGAANRSYGIQVAALAGVPRAVINQARAKLHELES-RDHSAPQALASGSAS 817 Query: 858 QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E+ ++ +++ ++ L+ D +SP AL LY +K Sbjct: 818 AAPETHYSIKESE--LYRALEQLDPDSLSPRDALDWLYKIK 856 >gi|291459239|ref|ZP_06598629.1| DNA mismatch repair protein MutS [Oribacterium sp. oral taxon 078 str. F0262] gi|291418493|gb|EFE92212.1| DNA mismatch repair protein MutS [Oribacterium sp. oral taxon 078 str. F0262] Length = 900 Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust. Identities = 310/819 (37%), Positives = 477/819 (58%), Gaps = 29/819 (3%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K +PMM+QY++ K PD+L+FYR+GDFYE+FF+DA AS L + LT + G+ P Sbjct: 4 KKFSPMMQQYLDSKKEYPDALLFYRIGDFYEMFFEDAKKASEALDLVLTGKDCGGGERAP 63 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCG+P H A+ YI +L+ G+++AI EQ+E P AK LV+R V+R+VTPGTLT + Sbjct: 64 MCGIPYHAADSYIARLVSRGYKVAIAEQMEDPKLAK-----GLVKREVIRVVTPGTLTSE 118 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREIIFS 200 +L +N+LM++ + ++ DISTG F + T +R L+ +I R PREI+ + Sbjct: 119 SVLDERKNNFLMSIFYDGARFGVSTADISTGEF-LCTDCGERGELLDEISRFSPREIVCN 177 Query: 201 EK-ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 +S E + L E + + F ++ + +++ T S ++EK + Sbjct: 178 HSFMISGMEIEELRERFSLLVTELSDSVFQEENADRLLERHFHATLSGIGLSDRELEKLS 237 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTI 318 AA A+SYI +TQ + I R + +DSA++ NLE+ TL +++ SLL + Sbjct: 238 AAGALSYIYETQKGSVSHIANIRRYQSSQFMILDSASQRNLELTETLREKKKRGSLLWVL 297 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D + T G RL + PL D +I R D++ + I + + L + D+ R L Sbjct: 298 DRTRTAMGARLLRRFLEQPLIDVGEIRRRQDAVEELCSHYIEREELSEYLNTIYDLERLL 357 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLS 436 R+ P+D+ + +R +I ++L E+ +++L L Q +++ L Sbjct: 358 GRISYQSANPRDLLAFKQSLRLLPDIRQQISGFHSELIREIYEEMDELSDLYQLIDEALV 417 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 +D P RDGG +R+G D R R + K +A L+ E+T IK+L+I++N Sbjct: 418 ----EDPPLSARDGGLIREGYHEEADHFRLARKKGKEWLAELESSEREKTGIKSLRIRYN 473 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY IEV++S +++ D FI +QT++ R+TT L +L+N I A Sbjct: 474 RIFGYCIEVSNSFKNLVP------DYFIRKQTLTGAERYTTDRLEELQNEILGAEEKLNA 527 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E F L + I E + +S+ IA++D ++L+ +A E+ Y RP I++ +++ Sbjct: 528 LEYGIFCQLRDRIAENIPRVQKSSREIALLDCMLSLSRVAAERGYVRPKINSEGRIRIRE 587 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE+ L++ F++ND L DK ++ ++TGPNM GKST++RQ ALIV+M Sbjct: 588 GRHPVVERLLREGM---FVSNDTLL----DKGEERISIITGPNMAGKSTYMRQVALIVLM 640 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A +GS+VPA A I + D++F+RVG++D+LASG+STFMVEM E A+IL A+ S +ILD Sbjct: 641 ASIGSFVPAEEADIAVCDRIFTRVGASDDLASGQSTFMVEMNEVANILRNASADSLLILD 700 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DGLSIAWA +EYL + + + L ATH+HELT+L L +N + VS + Sbjct: 701 EIGRGTSTFDGLSIAWAVVEYLSQMVKAKTLFATHYHELTELEGRLPGVNNYCVAVSKHD 760 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI 835 E IIFL K+IPG AD SYGI V LAG+P+ VI RA +I Sbjct: 761 EDIIFLRKIIPGGADQSYGIDVAGLAGVPSPVIERAKEI 799 >gi|294141937|ref|YP_003557915.1| DNA mismatch repair protein MutS [Shewanella violacea DSS12] gi|293328406|dbj|BAJ03137.1| DNA mismatch repair protein MutS [Shewanella violacea DSS12] Length = 855 Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust. Identities = 324/892 (36%), Positives = 487/892 (54%), Gaps = 53/892 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +NL+ TPMMRQY+ +K+ NP+ L+FYRMGDFYELF+DDA AS LGI+LT RGK G Sbjct: 7 QNLEKHTPMMRQYLTLKAENPEMLLFYRMGDFYELFYDDAKRASELLGISLTARGKSGGD 66 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H Y+ KL+++ +AICEQI P +K V R VVRLVTPGTL Sbjct: 67 PIPMAGLPYHAVEGYLAKLVQLRVSVAICEQIGDPATSK-----GPVERKVVRLVTPGTL 121 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREII 198 T++ LL N L AV + + A +D+S+G F +S + + L +++ R P E++ Sbjct: 122 TDEALLQERQDNLLAAVYHGKAGFGYATLDLSSGRFVVSELESREALEAELQRTSPAELL 181 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 +SE + S + F N +P FD S + D + + FG +++ Sbjct: 182 YSE-DFSEMSLITRF----NGKRRRPEWEFDFDTSRKLLLDQFKTKDLRGFGLENARLSL 236 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA + Y+K TQ P I R + ++ +D+A R NLE+ L G RE +L Sbjct: 237 QAAGCLMQYVKDTQRTALPHINSIVRFNQDDSIVLDAATRRNLELTINLQGGRENTLSAI 296 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D + T G R+ + PL D +I +RL ++ + + + N + LK+ D+ R Sbjct: 297 LDNTTTPMGSRMLQRWLHEPLRDRQQIESRLGALTELLDSGLFDN-LTPHLKALGDIERI 355 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 +RL + P+D + ++ + I L P L+ + + P L L Sbjct: 356 TARLALRSARPRDFSRLKQALSVLPEIQQLLASCQSPH-LKRLATIMSEFPDEL-ALLDR 413 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + D+ P RDGG LRDG + LD+ R+L + + L+ + E T I LK+ +N Sbjct: 414 AIIDNPPMLIRDGGVLRDGYNEELDQWRALSKGATDYLKELEAREKESTGISTLKVGYNR 473 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IEV+ + ++ + RQT+ N R+ EL + E ++ ++ AL + Sbjct: 474 VHGYYIEVSRRESDLVPLS------YQRRQTLKNTERYIVAELKEHEEKVLSSQGKALAL 527 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + +E L + I+ + L +Q A +D+ A A+ NY P + + + ++ G Sbjct: 528 EKQLWEQLFDLILPKLHELQLFAQGAAELDVISNFAERAETLNYRCPTLTDISGIHIESG 587 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE Q S PFIAN L+ ++ K+ ++TGPNMGGKST++RQ ALI +MA Sbjct: 588 RHPVVE----QVSQSPFIANPVTLN-----STRKMLIVTGPNMGGKSTYMRQVALITLMA 638 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GSYVPA A IG VD++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT QS V++DE Sbjct: 639 HIGSYVPAQEAVIGPVDRIFTRIGASDDLASGRSTFMVEMTETANILHNATTQSLVLMDE 698 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGT+T DGLS+AW+ EYL E L ATH+ ELT L + N L + + Sbjct: 699 IGRGTSTYDGLSLAWSAAEYLAEKIGAMTLFATHYFELTQLPDLIDNVENVHLDAIEHGD 758 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 I+F+H V G A SYG+QV LAG+P VI+ A KL+H +D Sbjct: 759 TIVFMHAVQEGAASKSYGLQVAALAGVPARVIAAAK------HKLHHLESRD-------- 804 Query: 858 QTKESKNNLSKNDKLFVEK--------IKCLNLDEMSPLTALKTLYAVKAWT 901 +K++ + S+ +F E+ ++ +N D++SP AL+ LY +K T Sbjct: 805 -SKDANHEPSQQTMVFPEQKISQVEDALQSINPDDLSPKQALEILYRLKQLT 855 >gi|258515354|ref|YP_003191576.1| DNA mismatch repair protein MutS [Desulfotomaculum acetoxidans DSM 771] gi|257779059|gb|ACV62953.1| DNA mismatch repair protein MutS [Desulfotomaculum acetoxidans DSM 771] Length = 897 Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust. Identities = 310/830 (37%), Positives = 493/830 (59%), Gaps = 46/830 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY++IK + D+++F+R+GDFYE+FF+DA ASR L ITLT R + IPMCG Sbjct: 4 TPMIKQYLQIKERHTDAILFFRLGDFYEMFFEDAHCASRELDITLTGREGGREERIPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A YI +L++ G+++AICEQ+E P + K +VRR VVR++TPGT+ + Sbjct: 64 VPYHAAEGYIARLVEKGYKVAICEQVEDP-----KAVKGIVRREVVRVITPGTILSGSFI 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD--RLISDIMRIDPREIIFSEKE 203 +N++++V+R + + +A +D+ TG+F ++ D L +I R+ P E + + Sbjct: 119 EDKRNNFIISVSREKEHYGLAVVDLGTGLFMVTEFAIDDTALAEEISRLQPSEAVVARDS 178 Query: 204 LSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 S +E +F + N+ ++Q P FF + + + D NI + +E TAA Sbjct: 179 FSKSELGIIFSGIFNITISQQPLDFFTFTQAYKSLVD--NIGE-EKLTENKLLEMTAAVC 235 Query: 263 A----ISYIKKTQM-----VNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQ 312 A ++Y+K+TQ +N T+ P R + +D+ R NLE+ ++L G++ Sbjct: 236 AAGGLLTYLKETQKTALQHLNAITVYKPSR-----FMVLDATTRKNLELTKSLREGTKWG 290 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 SLL +D ++T GGRL + PL + KIN RLD++ I++ + +++IL Sbjct: 291 SLLWVLDRTVTAMGGRLLKNWLEQPLLSAAKINLRLDAVAELIKDGFIRYDLKEILSKLY 350 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKND--LPEELRGAVEKLKKLPQS 430 D+ R R+ G +D+ I+ + I + + L +L +E L +L Sbjct: 351 DLERLTGRIAYGTAGARDLNAIKVSLAVLPQIKEILARTSSVLLSKLSEQIEILDELYDL 410 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 LE+ + D+ P R+GG ++ G + +D RS +K +A ++ + E T IK+ Sbjct: 411 LERAVI----DNPPVSVREGGMIKTGFNEKVDYLRSAGKDAKNWVAEMEARERERTGIKS 466 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ N GY++EVT S+ ++ ++ +I +QT++N R+ T +L + EN I A Sbjct: 467 LKVGFNKVFGYYLEVTKSNIHLVPEE------YIRKQTLANAERYITPQLKEYENMILGA 520 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 + +E F L N + ++ +L +++ A D +ALA A E+ Y RP I+++ Sbjct: 521 RDKLNELEYSIFIDLRNIVADKIPALQKSARAAARADALMALAETAVEERYLRPSINSNG 580 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 +K+GRHP+VE+ LK + F+ ND D+ ++ +L LLTGPNM GKST++RQ Sbjct: 581 LIKIKEGRHPVVERVLK---TGEFVPNDTDI----NEQDRRLVLLTGPNMAGKSTYMRQV 633 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALIV++AQ+GS+VPA YA IGIVD++F+RVG+AD+LA G+STFMVEM E I+ AT Q Sbjct: 634 ALIVLLAQVGSFVPADYAEIGIVDRIFTRVGAADDLAGGQSTFMVEMNECKVIVENATAQ 693 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S +I+DE+GRGT+T DG+SIA A IEY++ + + L +TH+HELTDL + L N T+ Sbjct: 694 SLIIMDEVGRGTSTYDGISIARALIEYINRDLKAKTLFSTHYHELTDLDQ-LHGVVNHTV 752 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 V ++ +GI+FL KVIPG AD SYGI V +LAG+P ++ RA ++L + E Sbjct: 753 AVQETGDGIVFLRKVIPGKADRSYGIHVARLAGIPENILLRADEVLNSLE 802 >gi|110834670|ref|YP_693529.1| DNA mismatch repair protein MutS [Alcanivorax borkumensis SK2] gi|122959403|sp|Q0VNJ1|MUTS_ALCBS RecName: Full=DNA mismatch repair protein mutS gi|110647781|emb|CAL17257.1| DNA mismatch repair protein MutS [Alcanivorax borkumensis SK2] Length = 859 Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust. Identities = 313/886 (35%), Positives = 486/886 (54%), Gaps = 35/886 (3%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L TPMM+QY+ IK+ +PD LVFYRMGDFYELFF DA A+R L ITLT+RG+ GK Sbjct: 4 DLSQHTPMMQQYLGIKAEHPDQLVFYRMGDFYELFFGDAQKAARLLDITLTQRGQSAGKP 63 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM G+P H A +Y+ +L+K+G +AI EQI P AK V R VVR+VTPGT++ Sbjct: 64 IPMAGIPYHAAENYLARLVKLGESVAIAEQIGDPALAK-----GPVERKVVRIVTPGTVS 118 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIF 199 ++ LL N L AV ++ A +D++ G F ++ ++L + + R P E++ Sbjct: 119 DEALLEERRDNLLCAVFDHNNQYGCASLDLAAGRFLVTQVEGAEQLQALLERWSPAELLI 178 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 SE+ + T +P+ FD + ++ + + + FG S V +A Sbjct: 179 SEEHGLPGRWSDRPGTR-----KRPSWEFDEDAARRQLCQQFQVQDLAGFGEPSPVAVSA 233 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A A + Y K+TQ P I E + +D+A R NLE+ TL G + +L +D Sbjct: 234 AGALLGYAKETQRGELPHITGLTVESFDDAVAMDAATRRNLELTETLDGQEQHTLAWVLD 293 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL + PL + T + R D I+ Q + +L D+ R L Sbjct: 294 STKTAMGARLLKRWVHQPLRNRTTLTQRQDQIDALRQG-WCFESARDVLNDIGDMERILG 352 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ + P+D+ + +++ ++ D EL +E++ + P +E L + + Sbjct: 353 RVALRSARPRDLTRLHASLKALPPLIGTLPAADCFCEL---IERIGQFPNQVE-LLGTAV 408 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 ++ P RDGG + G LDE RS+ + + I+ ++ + E T++ L++K+N Sbjct: 409 IENPPMLIRDGGVIAPGYSEELDELRSISENAGAILVDIETRERERTQLSTLRVKYNRVH 468 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IE++ + D + RQT+ N RF T EL + E++ +A++ AL +E Sbjct: 469 GYYIELSRRESDQAPTD------YQRRQTLKNAERFITPELKEFEDKALSASSKALALEK 522 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP-IIDNSTNFIVKDGR 618 +E L + +L ++ +A +D+ +LA A+ N+ P ++D+ + DGR Sbjct: 523 RLYEALLEKVAADLHALQRSAAAVAELDVLASLAERAEALNWVLPQLVDDEAIIEIVDGR 582 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ L F+ N L N+ ++ ++TGPNMGGKST++RQ ALI ++A Sbjct: 583 HPVVEQVL----DDAFVPNSLHLD-----NARRMVIITGPNMGGKSTYMRQTALIALLAH 633 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS VPA+ A IG +D++F+R+GS+D+LA GRSTFMVEM ETA+ILN AT QS V++DEI Sbjct: 634 LGSCVPAASARIGSLDRIFTRIGSSDDLAGGRSTFMVEMSETANILNNATAQSLVLMDEI 693 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGLS+AWA E+L + L ATH+ ELT L + L +NA L S+ + Sbjct: 694 GRGTSTFDGLSLAWAAAEHLARNLKSFTLFATHYFELTQLPEQLPGIYNAHLTASEHDNR 753 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK---LYHHNQKDMRLYYP 855 I+FLH+V G A SYG+QV +LAG+P++VI RA + L+ E+ L P Sbjct: 754 IVFLHRVQEGPASRSYGLQVAQLAGVPSSVIHRAGEKLRELEQSKPLAPSATPPSSYAAP 813 Query: 856 EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWT 901 ++ +L + L+ DE++P AL+ LY +K T Sbjct: 814 SPAAAPAQASLFNEPNAIELALTDLDPDELTPKQALEALYTLKKLT 859 >gi|261253951|ref|ZP_05946524.1| DNA mismatch repair protein MutS [Vibrio orientalis CIP 102891] gi|260937342|gb|EEX93331.1| DNA mismatch repair protein MutS [Vibrio orientalis CIP 102891] Length = 859 Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust. Identities = 314/893 (35%), Positives = 493/893 (55%), Gaps = 55/893 (6%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 E+ + TPMM+QY+++K+ NPD ++FYRMGDFYELF+DDA AS+ L I+LTKRG G Sbjct: 6 EKEKQKHTPMMQQYLKLKAENPDIMLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAG 65 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT Sbjct: 66 EPIPMAGVPFHAVEGYLAKLVQLGESVAICEQIGDPATSK-----GPVDRAVVRIVTPGT 120 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREI 197 +T++ LLS N + A+ ++ A +D+++G F++ + + +++ R PRE+ Sbjct: 121 VTDEALLSERLDNLIAAIYYHNGKFGYATLDVTSGRFQLMEPETEEAMAAELQRTSPREL 180 Query: 198 IFSEK-ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 +F E E H + N +P F+ ++ ++ + + FG +++ Sbjct: 181 LFPEDFEPVH------LMSARNGNRRRPVWEFELDTAKQQLNQQFGTRDLVGFGVENAKL 234 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA I Y+K TQ P I + ++ +D+A R NLE+ + L+G + +L Sbjct: 235 GLCAAGCLIQYVKDTQRTALPHIRSLTFDRQDHSVILDAATRRNLELTQNLAGGTDNTLA 294 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 + +D++ T G R+ + P+ D +N RLD+I+ ++ L + +LK D+ Sbjct: 295 EVLDHTATAMGSRMLKRWLHQPMRDIDTLNHRLDAISE-LKEAALFGDLHPVLKQIGDIE 353 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEK--LKKLPQ-- 429 R L+RL + P+D+A +R F LPE EL G++ L KL Q Sbjct: 354 RILARLALRSARPRDMARLR------------FAMQQLPELSELMGSLNHSYLTKLAQYA 401 Query: 430 ----SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE 485 + + L + ++ P RDGG + +G +A LDE R L D + + ++ E Sbjct: 402 APMDQVCELLERAIKENPPVVIRDGGVIAEGYNAELDEWRKLADGATEYLEQMEQDERER 461 Query: 486 TKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 I LK+ +NN G+FI+V+ + ++ ++ RQT+ N R+ EL + E+ Sbjct: 462 HGIDTLKVGYNNVHGFFIQVSRGQSHLVPP------HYVRRQTLKNAERYIIPELKEHED 515 Query: 546 RITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPI 605 ++ N+ + AL +E + +E L + ++ E L N + ++ ID+ LA A +YCRP Sbjct: 516 KVLNSKSKALALEKQLWEELFDLLLPHLEQLQNLASAVSQIDVLQNLAERADSLDYCRPS 575 Query: 606 IDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKST 665 + ++ GRHP+VE+ + + PFIAN DL+ K+ ++TGPNMGGKST Sbjct: 576 LTKEPGIHIQAGRHPVVEQVMDE----PFIANPIDLNPQR-----KMLIITGPNMGGKST 626 Query: 666 FLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILN 725 ++RQ ALI +MA +GSYVPA A IG VD++F+R+G++D+LASGRSTFMVEM ETA+IL+ Sbjct: 627 YMRQTALIALMAHIGSYVPAESAQIGSVDRIFTRIGASDDLASGRSTFMVEMTETANILH 686 Query: 726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRF 785 AT S V++DEIGRGT+T DGLS+AWA+ E+L + L ATH+ ELT+L + Sbjct: 687 NATANSLVLMDEIGRGTSTYDGLSLAWASAEWLAKELGSMTLFATHYFELTELPNQIPHL 746 Query: 786 HNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH 845 N L + + I F+H V G A SYG+ V LAG+P +VI A L E+L Sbjct: 747 ANVHLDAVEHGDSIAFMHAVQEGAASKSYGLAVAGLAGVPKSVIKNARAKLTQLEQL--- 803 Query: 846 NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 Q + L ++ +L E + ++ D+++P AL+ LY +K Sbjct: 804 GQNEASLTPSSAVDIANQLSLIPEPSEVEEALANIDPDDLTPRQALEELYRLK 856 >gi|300870934|ref|YP_003785805.1| DNA mismatch repair protein MutS [Brachyspira pilosicoli 95/1000] gi|300688633|gb|ADK31304.1| DNA mismatch repair protein, MutS [Brachyspira pilosicoli 95/1000] Length = 896 Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust. Identities = 322/863 (37%), Positives = 500/863 (57%), Gaps = 53/863 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY EIK DS++ +RMGDFYE+FF+DA + S LG+TLTKR ++PM G Sbjct: 22 TPMMRQYKEIKDKYSDSILLFRMGDFYEVFFEDAKIVSELLGLTLTKRA-----NVPMAG 76 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H ++Y+ KL+K G +IAIC+Q+E P AK +V+R+V +++TPGT+ E++ L Sbjct: 77 VPYHAIDNYLSKLVKSGKKIAICDQMEDPKTAK-----GIVKRDVTQVITPGTIAENKYL 131 Query: 146 SPTDSNYLMAVARIRTE--WAIAWIDISTGIFKISTSNH-------DRLISDIMRIDPRE 196 +NYL ++ ++E AIA DISTG ++ + D + +I+R P+E Sbjct: 132 ESKSNNYLASIIVSKSENNVAIAICDISTGELYVTEFENNNTKDFLDEICEEIIRFYPKE 191 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFGSFSQV 255 I+ E K + N+ + PN ++S + + +++ ++ +FG + Sbjct: 192 IMTVESVKESKIIKEIQNRFSNIFFSTTPNYTAEYSYAYKLLTNHFKTISLKSFGIEDKH 251 Query: 256 EKTAAAAAISY----IKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSR 310 + ++ Y + KT + + I R+D ++ +D A S+LEIL T+ + + Sbjct: 252 LIVSLLGSLIYYLQELSKTSLEHISNIKLYNRKD---SMTLDYATISSLEILETIRNDNN 308 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 + +L TID + T G R I PL D +IN RL+++ +F +N + I +L Sbjct: 309 KMTLFDTIDKTKTSMGARYLKRIIVEPLLDIDEINKRLNNVEYFYKNQKFMYRIMDMLSD 368 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS 430 D+ R S+L +GR PK++ ++ + S + I+ + N+ + + +K + Sbjct: 369 VGDIERLASKLALGRINPKELVSLKRFLFSSLQIITELVLNNFNDVNFEEIGDIKIITDL 428 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 +E+ + +D +G ++D D L + R + + I+ L+ +Y T I N Sbjct: 429 IERAIL----EDPKIVLNEGDIIKDDYDEKLKKYNEARREGRTWISELENEYKSITSINN 484 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LKI++NN +GY+IE+T S+ S++ KD FI RQT+ R+TT +L++ E I A Sbjct: 485 LKIRYNNVIGYYIEITKSNISLVPKD------FIKRQTLVGSERYTTSKLMEYEKTINEA 538 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 + +E + F + N + E S+ +++I++ID+ +LA LA E+NY +PII + Sbjct: 539 NEKSYALEYDIFIEVRNKVNEYLTSILKMAKIISVIDVYASLACLAAEENYTKPIITDDG 598 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 +K+GRHP+VE LK +S FIAND L N+ L ++TGPNM GKST+LRQ Sbjct: 599 IIDIKEGRHPVVEANLKNES---FIANDTYLDNKNEH----LLIITGPNMSGKSTYLRQT 651 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALIV++AQ+GS+VPA A I IVD++F+RVG++DN+A G STF+VEM ETA ILN T++ Sbjct: 652 ALIVLLAQIGSFVPAKSAKISIVDRIFTRVGASDNIAKGESTFLVEMNETAYILNHCTDR 711 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYL--HETNRCRGLLATHFHELTDLSKSLKRFHNA 788 S VI+DEIGRGT+T DGLSIAWA +EYL E + + L ATH+HELT L + L+ N Sbjct: 712 SLVIMDEIGRGTSTYDGLSIAWAIVEYLVNEENKKSKTLFATHYHELTML-EDLEGVKNY 770 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 + V + + IIF+ KVI G A+ SYGI K+AG P+ VI RA +ILK E N+ Sbjct: 771 KVLVEEYKDEIIFMKKVIEGAAESSYGIYAAKIAGAPHKVIQRASEILKKLE-----NEA 825 Query: 849 DMRLYYPEIQTKESKNNLSKNDK 871 +++ EI K+S + L N K Sbjct: 826 GIQVENIEINNKKSPDILPFNSK 848 >gi|255280936|ref|ZP_05345491.1| DNA mismatch repair protein MutS [Bryantella formatexigens DSM 14469] gi|255268384|gb|EET61589.1| DNA mismatch repair protein MutS [Bryantella formatexigens DSM 14469] Length = 875 Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust. Identities = 305/819 (37%), Positives = 480/819 (58%), Gaps = 32/819 (3%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY+E K PD ++FYR+GDFYE+FFDDAL ASR L ITLT + L + PMCGVP Sbjct: 1 MMQQYLETKKNYPDCILFYRLGDFYEMFFDDALTASRELEITLTGKNCGLEERAPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H ++Y+ KL+ G+++AICEQ+E P AK +V+R V+R+VTPGT + L Sbjct: 61 YHAVDNYLNKLVSKGYKVAICEQMEDPKLAK-----GIVKREVIRIVTPGTNLDTLALDE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISD-IMRIDPREIIFSEKEL-S 205 T +NYLM + + + ++ DISTG + ++ + R ++D I + P+EII ++ L S Sbjct: 116 TRNNYLMCIVCMADRFGVSVADISTGAYLVTELDSARKLTDEIFKFSPKEIICTQAFLMS 175 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG--SFSQVEKTAAAAA 263 + + L LG + +FD + + ++++ + D G F+ AA A Sbjct: 176 GIDVEDLKARLGITIYTLDDWYFDDELCRRALTEHFHTESTDGLGLGDFN-CGVIAAGAL 234 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 + Y+ +TQ + + + +DS+ R NLE+ TL R+ SLL +D + Sbjct: 235 LQYLIETQKTSISNLTQLTPYTSGKYMVLDSSTRRNLELCETLREKQRKGSLLWVLDKTK 294 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G R+ I PL D +I R ++ N I I++ L D+ R +S++ Sbjct: 295 TAMGARMLRSFIEQPLIDIDEIELRQQAVAELKSNAIAREEIREYLNPVYDLERLISKIS 354 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 P+D+ + + +I + K+ L +R ++ L+ L +E+++ Sbjct: 355 YQTANPRDLVAFKSSLSMLPHIKYIMGDFKSALLCNIREDIDVLEDLCTLVEQSII---- 410 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 +D P R+G +RDG +D R + + K +A L+ K E+T IKN+K+K+N G Sbjct: 411 EDPPISIREGNLIRDGFHEEVDRLRQAKTEGKTWLADLEAKEREKTGIKNMKVKYNRVFG 470 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y++EVT+S ++ D + +QT++N R+ T EL +LE+ I A + + +E E Sbjct: 471 YYLEVTNSYKDMVP------DYYTRKQTLANAERYITPELKELEDVILGAEDRLVSLEYE 524 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F + + I + + ++ +A ID+ +LA++A++ NY P +++ ++DGRHP Sbjct: 525 LFCEVRDKIASEILRIQKTAKAVAGIDVFASLALVAEQNNYVCPKMNSRGLIQIRDGRHP 584 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK +K FIAND L D + ++ ++TGPNM GKST++RQ ALIV+MAQ+G Sbjct: 585 VVEKMIKNDM---FIANDTLL----DNHKNRISIITGPNMAGKSTYMRQTALIVLMAQIG 637 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPAS A IGIVD++F+RVG++D+LASG+STFMVEM E A+IL AT+ S +ILDEIGR Sbjct: 638 SFVPASEAKIGIVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSDSLLILDEIGR 697 Query: 741 GTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GT+T DGLSIAWA +E++ + L ATH+HELT+L L +N + V + + Sbjct: 698 GTSTFDGLSIAWAVVEHISNPKLLGAKTLFATHYHELTELEGKLSSVNNYCIAVRERGDD 757 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILK 837 I+FL K++ G AD SYGIQV KLAG+P+++I RA ++++ Sbjct: 758 IVFLRKIVRGGADKSYGIQVAKLAGVPDSIIERAKELVQ 796 >gi|303257833|ref|ZP_07343843.1| DNA mismatch repair protein MutS [Burkholderiales bacterium 1_1_47] gi|330998745|ref|ZP_08322473.1| DNA mismatch repair protein MutS [Parasutterella excrementihominis YIT 11859] gi|302859436|gb|EFL82517.1| DNA mismatch repair protein MutS [Burkholderiales bacterium 1_1_47] gi|329576242|gb|EGG57758.1| DNA mismatch repair protein MutS [Parasutterella excrementihominis YIT 11859] Length = 881 Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust. Identities = 313/843 (37%), Positives = 482/843 (57%), Gaps = 40/843 (4%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK-HL 77 E++L S TP MRQ+I+IK NP L+ YRMGDFYE FF+DA L R LG+TLT R + Sbjct: 14 EQDLLSFTPAMRQFIQIKRDNPTLLIMYRMGDFYETFFEDAELVHRVLGLTLTSRSSTNS 73 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G IPM G+P T + Y+ +L+ G + ICEQ+ +P K L+ R +VR +TPG Sbjct: 74 GTRIPMAGIPYMTLDQYLVRLVNQGFSVGICEQLGTP-------GKGLMERKLVRTITPG 126 Query: 138 TLTEDQLLSPTDSNYLMAV--ARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPR 195 TLT++ LL+ + L+AV + +AW+ IS+G+FK + L+++I RI+P Sbjct: 127 TLTDESLLNDRSESTLLAVYIQGKGSAVGLAWMTISSGVFKAMETTEAGLLNEIERINPS 186 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAV-AQPNVFFDHSISESRIADYYNITTVDTFG-SFS 253 EI+ ++ + AE E + +V A P+ FD +E + + +T++ FG + S Sbjct: 187 EILIADHDRELAE-----ERFPDRSVSALPDWHFDRIRAEKTLLKQFGTSTLEPFGIADS 241 Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 + TAA Y + TQ + I RE L +D+A+R NLEI+RTL G + + Sbjct: 242 DLLITAAGVVAEYARSTQGTDLTHITAITRETDNDHLGLDAASRRNLEIVRTLRGEQTNT 301 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L T+D+ T G R A + SP D ++ R D++ + + + I + LKS PD Sbjct: 302 LFSTLDHCRTAMGSRRLASWLTSPCRDQSEATKRSDAVEILLGSMEKLENINEFLKSIPD 361 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN--DLPEELRGAVEKLKKLPQSL 431 R+ +R+ +G +P+++A +RD + S LN+ +N DL EL + LP+ L Sbjct: 362 FERTATRIALGSVKPRELAALRDALPS----LNVIAENLSDLDSELLKETAEELPLPEEL 417 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + L + L + TF RDG + +G +A LDE R+L++ + + + + E T I NL Sbjct: 418 YQLLCASLKKEPSTFIRDGNVIAEGFNAELDELRALKNHGGQFLVDYEAREKERTGIPNL 477 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 +++ N+ GYFIEV + D + RQT+ N+ R+ T EL E++ +A Sbjct: 478 RVEFNSVQGYFIEVPKGQIDKVPAD------YRRRQTLKNVERYITPELKAFEDKAVSAE 531 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + +E + +E L + L N++ ++ +D + A A + +P T+ Sbjct: 532 ERSKALEKQLYEELILKCKPFCQDLLNSAHGVSALDALSSFAQHADTYRWIKPNFVPVTS 591 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 +K RHP+VE+T++ ++ NDCDL + +L ++TGPNMGGKST++R A Sbjct: 592 VEIKGARHPVVEETIEN-----YVPNDCDLDAQH-----RLHIITGPNMGGKSTYMRSIA 641 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LIV++A GS+VPA A IG++DK+ +R+G+AD+LA G STFMVEM ETASIL QAT++S Sbjct: 642 LIVLLAYSGSFVPAESADIGVIDKILTRIGAADDLARGLSTFMVEMTETASILRQATDKS 701 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 V++DE+GRGT+T DGLS+A A E L R L ATH+ ELT L K+L N + Sbjct: 702 LVLMDEVGRGTSTFDGLSLAAAIAEDLVVNCRSLTLFATHYFELTQLEKTLPDVVNVHVA 761 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI-LKTFEKLYHHNQKDM 850 ++S++ I+FLH++ PG A+ SYGI V KLAG+P +VI A + LK E+ + K + Sbjct: 762 AAESSKNIVFLHEIRPGAANQSYGIAVAKLAGIPRSVIRGAQKVLLKLEERAAQTDDKQL 821 Query: 851 RLY 853 L+ Sbjct: 822 DLF 824 >gi|153954199|ref|YP_001394964.1| DNA mismatch repair protein MutS [Clostridium kluyveri DSM 555] gi|219854807|ref|YP_002471929.1| hypothetical protein CKR_1464 [Clostridium kluyveri NBRC 12016] gi|189030764|sp|A5N8I5|MUTS_CLOK5 RecName: Full=DNA mismatch repair protein mutS gi|254766624|sp|B9E1Z0|MUTS_CLOK1 RecName: Full=DNA mismatch repair protein mutS gi|146347080|gb|EDK33616.1| MutS [Clostridium kluyveri DSM 555] gi|219568531|dbj|BAH06515.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 871 Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust. Identities = 306/828 (36%), Positives = 474/828 (57%), Gaps = 43/828 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY+EIK D ++F+R+GDFYE+FFDDA +A+ L + LT R L + PMCG Sbjct: 4 TPMMRQYMEIKENYKDCILFFRLGDFYEMFFDDAKIAAAELELVLTARECGLKEKAPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H A YI +++ G++IAICEQ+E P ++K +V+R +++++TPGT + L Sbjct: 64 IPYHAAKSYIGRMVNKGYKIAICEQLEDPAQSK-----GIVKRGIIKVITPGTYMDSYFL 118 Query: 146 SPTDSNYLMAVARIRTE---WAIAWIDISTGIFKISTS--NHDRLISDIMRIDPREIIFS 200 ++NY+M + E A+ + DISTG F + + N ++ +I + +PREII Sbjct: 119 DENENNYIMCLYINNNEGSNCALCFADISTGEFNCTDTPFNLSVILDEICKFNPREIIIQ 178 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT-- 258 E ++ + + E +F R + F + E T Sbjct: 179 E-DIDSNILQGIVEVFNETFSRVDECYFQKGEEVLR----------EQFKDLNLREYTPE 227 Query: 259 ---AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SL 314 A + YIK TQ N I + +I L ID ++ NLEI+ +L S+++ SL Sbjct: 228 IIKCGGALVKYIKHTQKTNLSHINKFQYYNIVDYLTIDINSKRNLEIVESLRESKKKGSL 287 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L ID + T GGR + I PL D KI RLDS+ + N +++ LK+ D+ Sbjct: 288 LGVIDKTNTSMGGRQLRKWIEQPLIDRNKIMERLDSVEEILNNICYHEDLKEALKNIYDI 347 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R ++ K++ ++ I I + + L N L+ + L +L + + Sbjct: 348 ERLAGKISSKSVNAKELNSLKSSIEK-IPDIKVILSNFETSLLKNMYKNLDEL-KDIYML 405 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L + D+ ++G +++G D+ +D + + + K IASL+ E TKIK+LKI Sbjct: 406 LDKAILDNPSVSLKEGNLIKEGYDSEIDRLKEAKVKGKDWIASLESSERELTKIKSLKIG 465 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+IEVT S+ +++ + R+I +QT+SN R+ T EL ++E++I A Sbjct: 466 YNKVFGYYIEVTKSNLNLV-----PEHRYIRKQTLSNAERYITPELKEMEDKILGAEEKL 520 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E +F + + + ++ + N++++I+ +D +LA A E NYC+P I S + Sbjct: 521 IYLEYNAFVEVRDKVEKEVTRIQNSARIISEVDCLTSLARAALENNYCKPEITLSDRVYI 580 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 ++GRHP+VE L S+ F++ND D+ D +L L+TGPNM GKST++RQ AL+ Sbjct: 581 EEGRHPVVENML---STGEFVSNDTDI----DTGENQLLLITGPNMAGKSTYMRQVALVT 633 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMAQ+GS+VPA A I I DK+F+R+G++D+LASG+STFMVEM E ++IL ATN+S ++ Sbjct: 634 IMAQIGSFVPAKSASISICDKIFTRIGASDDLASGKSTFMVEMWEVSNILKNATNKSLIL 693 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQV 792 LDE+GRGT+T DGLSIAW+ IEY+ + RC+ L ATH+HELT L +K N + V Sbjct: 694 LDEVGRGTSTYDGLSIAWSVIEYICRESKLRCKTLFATHYHELTKLEGKIKGVKNYCVSV 753 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + I+FL K+I G AD SYGI+V KLAGLP V+ RA +IL + E Sbjct: 754 KEVENNIVFLRKIIRGGADQSYGIEVAKLAGLPEEVLKRAREILNSLE 801 >gi|257439842|ref|ZP_05615597.1| DNA mismatch repair protein MutS [Faecalibacterium prausnitzii A2-165] gi|257197751|gb|EEU96035.1| DNA mismatch repair protein MutS [Faecalibacterium prausnitzii A2-165] Length = 871 Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust. Identities = 319/900 (35%), Positives = 509/900 (56%), Gaps = 69/900 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM+QY++IK D ++FYR+GDFYE+FFDDAL ASR L +TLT + + + PMCG Sbjct: 5 SPMMQQYMDIKKQYKDEILFYRIGDFYEMFFDDALTASRELDLTLTGKQCGMEERAPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+ Y+ +LI G+++AICEQ+E P +AK LV+R+++R+VTPGT+ E +L Sbjct: 65 VPFHSYEGYVARLIAKGYKVAICEQMEDPSKAK-----GLVKRDIIRVVTPGTVIESSML 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRL----ISDIMRIDPREIIFSE 201 +NY+ ++ I + D+STG I+ +++ I+++ R P E++ + Sbjct: 120 QDDKNNYIASIFLKGNAAGICFADVSTGTAHITELKREKIVPAVIAELCRYHPSEVLMNP 179 Query: 202 -----KELSHAEYKSLFETL----------GNVAVAQPNVFFDHSISESRIADYYNITTV 246 +EL+ K++ ++ G VA++ N F ++ T++ Sbjct: 180 GMLDCRELTGYIKKNMTCSVELVEEERYAPGLVAISLENQFG---------RNWDETTSI 230 Query: 247 DTFGSFSQVEKTAAAAAISYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEI 302 D G + + A AA + Y+ TQ+ K I Y E + +Q + R+NLE+ Sbjct: 231 DKKG----LVRFAMAALLEYLHTTQIKGVERLKTVISYNEAQYMQ----LSPVTRANLEL 282 Query: 303 LRTLSGSREQ-SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILI 361 TL G ++ +LL +D + T G RL I PL S IN RLD++ + + Sbjct: 283 TETLRGREKRGTLLWVLDKTSTAMGKRLLRTWIEQPLLSSDAINHRLDAVESLVNQTVQR 342 Query: 362 NPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAV 421 + + L D+ R ++R G PK+I + + L ++ EL V Sbjct: 343 GDLIEELHYIADLERMMTRTVYGSATPKEIYAMAQTCER-LPSLRQQAESCGCAELSEIV 401 Query: 422 EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLK 481 ++ L +K ++ + D P+ +DGG + G +DE RS+RD +K ++A L+ + Sbjct: 402 SRIDPLSDIKDKIYAA-VDPDAPSTLKDGGVIAKGYHPEVDELRSIRDNTKGVLAQLETR 460 Query: 482 YAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELI 541 +ET I LKI +N+ GYFIEV++S + + + +I +QT++ R+ T EL Sbjct: 461 LRQETGIPKLKIGYNHVFGYFIEVSNSYKA------QVPESYIRKQTLTTGERYITQELK 514 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 +LEN+I A + +E F L +I Q + + + +A +D+ ALA +A E NY Sbjct: 515 ELENKILGAHERLIALEHRLFNELLESIGAQLDRIQRTANAVAELDVLAALAQVAAENNY 574 Query: 602 CRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 CRP +D S + +GRHP+VE+ LK F+ ND L+C D+ ++TGPNM Sbjct: 575 CRPAVDESDQLTIVEGRHPVVEQMLK---GSLFVPNDTTLNCGEDR----CLIITGPNMA 627 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKST++RQNALI +MAQ+GS+VPA H+G+VD +F+R+G++D+L++G+STFMVEM E A Sbjct: 628 GKSTYMRQNALIALMAQIGSFVPARECHVGVVDAIFTRIGASDDLSAGQSTFMVEMTEVA 687 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNR---CRGLLATHFHELTDL 778 IL AT++S V+LDEIGRGT+T DG+SIA A +E++ + + C+ L ATH+HELTDL Sbjct: 688 EILKNATSRSLVVLDEIGRGTSTFDGMSIARAVVEHISDPAKGLGCKTLFATHYHELTDL 747 Query: 779 SKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKT 838 ++ N + V E I FL +++ G AD SYGI+V KLAGLP TV RA+++L+ Sbjct: 748 EGTISGVKNYNIAVKKRGEDITFLRRIVRGPADDSYGIEVAKLAGLPGTVTRRAHEVLRA 807 Query: 839 FEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E N+ + ++ + +Q S S+ +EK+ L+++ ++P+ AL LY +K Sbjct: 808 LEATAPKNKVE-QMDFDALQEYNSPAVPSE----VLEKLDALDVETLTPIEALNFLYELK 862 >gi|255655930|ref|ZP_05401339.1| DNA mismatch repair protein [Clostridium difficile QCD-23m63] gi|296450648|ref|ZP_06892401.1| DNA mismatch repair protein MutS [Clostridium difficile NAP08] gi|296879235|ref|ZP_06903230.1| DNA mismatch repair protein MutS [Clostridium difficile NAP07] gi|296260492|gb|EFH07334.1| DNA mismatch repair protein MutS [Clostridium difficile NAP08] gi|296429778|gb|EFH15630.1| DNA mismatch repair protein MutS [Clostridium difficile NAP07] Length = 947 Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust. Identities = 306/837 (36%), Positives = 491/837 (58%), Gaps = 52/837 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+E+K+ D ++F+R+GDFYE+FF+DAL+AS+ L I LT + L + PMCG Sbjct: 9 TPMMKQYLEVKNRYKDCILFFRLGDFYEMFFEDALVASKALEIALTGKACGLEERAPMCG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+AN YI KL++ G+++AI EQ+E P AK +VRR V+R++TPGT+ + LL Sbjct: 69 VPFHSANSYISKLVENGYKVAIGEQMEDPSTAK-----GIVRREVIRVITPGTVLDGNLL 123 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 +NYL+++ + T + ++DISTG + N D++I +I +I P EII ++ + Sbjct: 124 ENKKNNYLLSLYKDGTNIGLTYVDISTGETNATCLNEDKVIEEIAKIHPTEIIINDLDF- 182 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE--------- 256 E L ++A N++ + S S+ +Y +I + + F V Sbjct: 183 -------IEKLRDIATVS-NIYINESFSD----NYLDINILKEY--FPDVYLQKLKFDDK 228 Query: 257 ---KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ- 312 K++ + ++YI TQ I + + +D R+NLE+ +T+ G++++ Sbjct: 229 GLIKSSLSILLNYIYNTQKQITSNINNINIYNSSEYMVLDMFTRTNLELTQTIRGNKKKG 288 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 SLL +D + T GGRL + + PL + +KI RLD I + IL + ILK+ Sbjct: 289 SLLHVLDKTSTAMGGRLLRKYVEEPLINKSKIENRLDVIEEIKDDFILREDLNDILKNIY 348 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI---LNLFLKNDLPEELRGAVEKLKKLPQ 429 D+ R ++ R PK++ +++ I N+ +NL L E + G ++KL + Sbjct: 349 DIERICGKIAFERVTPKELIHLKNSIEKLPNLKDTINLSNAKILKEYVSG-MDKLDDIYN 407 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 +++ ++L + T K DG ++ L E R + ++ ++ + E+T +K Sbjct: 408 LIDE---AILEEPTITIK-DGNIIKSDFSDELKELREISKNGAFLVKEIENREREKTGVK 463 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 +LKI N GY+IE+T ++ K D + +I +QT+SN R+ T EL ++E +I + Sbjct: 464 SLKIGFNKVFGYYIEITKANFKQAKLD----ETYIRKQTLSNAERYITPELKEIEEKILH 519 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 A +E E F + + I + + + ++ IA ID+ ++LA +A NY +P I+ + Sbjct: 520 AEEKIKSLEYEIFVEIRDTIYKNIDRIQKVAKTIANIDVFVSLATVAHINNYVKPAINEN 579 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 +++GRHP+VE + +++ F+ ND L ++ + ++TGPNM GKST++RQ Sbjct: 580 NKLDIRNGRHPVVENIVGEEN---FVPNDTYL----NRGENIINIITGPNMSGKSTYMRQ 632 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 A+I +MA +GS+VPA YA I I+D++F+RVG++D+L+ G+STFMVEM E + IL AT Sbjct: 633 TAIIALMAHIGSFVPAEYADIPILDRIFTRVGASDDLSQGQSTFMVEMNEVSLILKNATE 692 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 +S VILDEIGRGT+T DG+S+AW+ +EY+ + RC+ L ATH+HELTDL + K N + Sbjct: 693 RSLVILDEIGRGTSTYDGISLAWSIVEYIQKNIRCKTLFATHYHELTDLEEEFKEVKNYS 752 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN 846 + V + EGIIFL K+IP AD SYGI V KLA LP+ VI RA ILK EK + +N Sbjct: 753 IAVKEDGEGIIFLRKIIPQGADKSYGIYVAKLAKLPDEVIERAKYILKDLEKNHVYN 809 >gi|170758982|ref|YP_001787121.1| DNA mismatch repair protein MutS [Clostridium botulinum A3 str. Loch Maree] gi|189030710|sp|B1KSA3|MUTS_CLOBM RecName: Full=DNA mismatch repair protein mutS gi|169405971|gb|ACA54382.1| DNA mismatch repair protein MutS [Clostridium botulinum A3 str. Loch Maree] Length = 932 Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust. Identities = 306/825 (37%), Positives = 489/825 (59%), Gaps = 38/825 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY+E+K D ++F+R+GDFYE+FF+DA +AS+ L + LT R L + PMCG Sbjct: 4 TPMMRQYLEVKESCKDCILFFRLGDFYEMFFEDAKVASKELELVLTGRDCGLEERAPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H AN YI +L+ G++IAICEQ+E P +K +V+R +++++TPGT T+ L Sbjct: 64 IPYHAANTYIGRLVSAGYKIAICEQLEDP-----SASKGIVKRGIIKIITPGTYTDSSFL 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREIIFSEKE 203 +NY+M+ ++++ DISTG F + SN ++ +I + PREI+ E+ Sbjct: 119 EENKNNYIMSFYLDDNMCSMSFADISTGEFNSTHSNFKEAVVLDEISKFAPREIVL-EEN 177 Query: 204 LSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 + + ++ E N+++++ FD++I + + N + + + K +A Sbjct: 178 IKESFIHTIKERFPNISISKIKEENFDYNIDNNLREQFNNFSE----NEYETIVKKSANG 233 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS-REQSLLKTIDYS 321 + YI TQ I + I L ID +R NLEI L ++ SLL +D + Sbjct: 234 LLYYIFHTQKNILSNINKIDYYSIVDYLTIDVNSRRNLEITENLREKIKKGSLLWVLDKT 293 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T GGR I PL + T I RL+++ + N L +++ LKS D+ R + ++ Sbjct: 294 NTAMGGRQLRRWIEQPLINKTPIENRLNAVEELLNNISLQEDLKEDLKSIYDIERIVGKV 353 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFL---KNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 K++ ++ I + + +L K+DL + ++ L+ + + L+K L Sbjct: 354 ASKSVNAKELISLKCSI-GKVPYIKKYLSSFKSDLFLNMEQCIDTLEDIHKLLDKALL-- 410 Query: 439 LSDDLPTFK-RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 D P+ ++G +++G + +D R + K+ IASL+ K EET IK+LK+ +N Sbjct: 411 ---DNPSLSVKEGNIIKEGFNEEVDSLREAKSNGKKWIASLEQKEKEETGIKSLKVSYNK 467 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GYFIE+T ++ +++ + R+I +QT+SN R+ T EL ++E +I A + I Sbjct: 468 VFGYFIEITKANLNLV-----PEGRYIRKQTLSNAERYITPELKEMEEKILGAEEKLIDI 522 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + F + + I E + + +++I+ ID +LA +A E NY +P I+ ++++G Sbjct: 523 EYKLFTEIRDFIEENIDRMQKTARIISDIDCLCSLATVALENNYIKPNINAKDEILIEEG 582 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VEK + + FI+ND + D +L L+TGPNM GKST++RQ ALI IMA Sbjct: 583 RHPVVEKVIPKGE---FISNDSLI----DTKENQLILITGPNMAGKSTYMRQVALITIMA 635 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+GS+VPA A+I I DK+F+R+G++D+LA+G+STFMVEM E ++IL AT++S V+LDE Sbjct: 636 QIGSFVPAKEANISICDKIFTRIGASDDLAAGKSTFMVEMWEVSNILKNATSKSLVLLDE 695 Query: 738 IGRGTATLDGLSIAWATIEYL--HETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 +GRGT+T DGLSIAW+ IEY+ ++ RC+ L ATH+HELT L ++K N ++ VS+ Sbjct: 696 VGRGTSTYDGLSIAWSVIEYICNNKNLRCKTLFATHYHELTKLEDNIKGVKNYSVSVSEL 755 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 I+FL K+I G AD SYGI+V KLAGLP+ VI+RA +IL+ E Sbjct: 756 ENEIVFLRKIIRGGADQSYGIEVAKLAGLPSPVINRAKEILQHIE 800 >gi|210612717|ref|ZP_03289432.1| hypothetical protein CLONEX_01634 [Clostridium nexile DSM 1787] gi|210151410|gb|EEA82418.1| hypothetical protein CLONEX_01634 [Clostridium nexile DSM 1787] Length = 875 Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust. Identities = 308/896 (34%), Positives = 515/896 (57%), Gaps = 53/896 (5%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY+E K D ++FYR+GDFYE+FFDDAL ++ L ITLT + L + PMCGVP Sbjct: 1 MMQQYMETKEQYKDCILFYRLGDFYEMFFDDALTVTKELDITLTGKNCGLEERAPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H Y+ KL++ G+++AICEQ+E P AK +V+R VVR+VTPGT Q L Sbjct: 61 YHAVEGYLTKLVQKGYKVAICEQVEDPKLAK-----GIVKREVVRIVTPGTNINTQALDE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISD-IMRIDPREIIFSEK-ELS 205 T +NY+M + I + ++ D+STG + ++ + R + D I + P EII +E +S Sbjct: 116 TKNNYIMCIVYIADRYGLSVADVSTGDYFVTELDSGRKLGDEIAKFSPSEIICNESLYMS 175 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAI 264 + + L LG + +FD ++ + D++ +++++ G + AA A + Sbjct: 176 GLDLEDLKNRLGITIYSLDTWYFDDAMCTKVLKDHFKVSSLEGLGLTDYNCGLIAAGALL 235 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT 323 Y+ +TQ + + + +DS++R NLE+ TL +++ SLL +D + T Sbjct: 236 QYLYETQKTSLAHLTGIISYTTGKYMLLDSSSRRNLELCETLREKQKRGSLLWVLDKTKT 295 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G R + PL ++ RLD++ + I I++ L D+ R +S++ Sbjct: 296 AMGARTLRSFVEQPLIHKEEVIKRLDAVGELKDDAISREEIREYLTPVYDLERLISKISY 355 Query: 384 GRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 P+D+ + + +I + +K L +EL ++ L++L Q ++ + + Sbjct: 356 QSANPRDLIAFKSSLEMLPHIKYILGDMKTPLLKELYEELDTLEELCQLIQHAIC----E 411 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + P ++GG +++G +D+ R+ + + K +A L+ + E+T IKNLKIK+N GY Sbjct: 412 EPPLAMKEGGIIKEGYHPDVDKLRNAKTEGKTWLAELETEEREKTGIKNLKIKYNKVFGY 471 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 ++EVT+S ++ D + +QT++N R+ L +LE+ I A + +E E Sbjct: 472 YLEVTNSYKELVP------DYYTRKQTLANAERYIIPRLKELEDTILGAEDKLYALEYEL 525 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 + + + I ++ + ++ IA ID+ +LA++A+ NY RP I+ +K+GRHP+ Sbjct: 526 YCNVRDTIADEVVRIQKTAKAIAQIDVFASLALVAERNNYVRPKINEKGVIDIKNGRHPV 585 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VEK + + FIAND L D ++ ++TGPNM GKST++RQ ALIV+MAQ+GS Sbjct: 586 VEKMI---PNDMFIANDTYL----DDKKNRVSIITGPNMAGKSTYMRQTALIVLMAQIGS 638 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA A+IGIVD++F+RVG++D+LASG+STFMVEM E A+IL AT++S +ILDEIGRG Sbjct: 639 FVPAETANIGIVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSKSLLILDEIGRG 698 Query: 742 TATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 T+T DGLSIAWA +E++ + L ATH+HELT+L + +N + V + + I Sbjct: 699 TSTFDGLSIAWAVVEHISNGKLLGAKTLFATHYHELTELEGKIDSVNNYCIAVKEKGDDI 758 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM--RLYYPEI 857 +FL K++ G AD SYGIQV KLAG+P +VI+RA +I+ ++ D+ R+ + Sbjct: 759 VFLRKIVKGGADKSYGIQVAKLAGVPESVIARAKEIVSEL------SEADITTRVRDISV 812 Query: 858 QTKESKNNLSKNDKL---------------FVEKIKCLNLDEMSPLTALKTLYAVK 898 Q+ ++K + K D++ +++++ L++ ++P+ AL T+Y ++ Sbjct: 813 QSGDTKKKMKKYDEVDLAQMSLFDTVKDDDVLKELEELDVAHLTPMDALNTIYRLQ 868 >gi|148379759|ref|YP_001254300.1| DNA mismatch repair protein [Clostridium botulinum A str. ATCC 3502] gi|153930881|ref|YP_001384057.1| DNA mismatch repair protein MutS [Clostridium botulinum A str. ATCC 19397] gi|189030760|sp|A7FUL0|MUTS_CLOB1 RecName: Full=DNA mismatch repair protein mutS gi|229486458|sp|A5I2S2|MUTS_CLOBH RecName: Full=DNA mismatch repair protein mutS gi|148289243|emb|CAL83339.1| DNA mismatch repair protein [Clostridium botulinum A str. ATCC 3502] gi|152926925|gb|ABS32425.1| DNA mismatch repair protein MutS [Clostridium botulinum A str. ATCC 19397] Length = 932 Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust. Identities = 309/826 (37%), Positives = 483/826 (58%), Gaps = 40/826 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY+E+K D ++F+R+GDFYE+FF+DA +AS+ L + LT R L + PMCG Sbjct: 4 TPMMRQYLEVKESCKDCILFFRLGDFYEMFFEDAKVASKELELVLTGRDCGLEERAPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H AN YI +L+ G++IAICEQ+E P +K +V+R +++++TPGT T+ L Sbjct: 64 IPYHAANTYIGRLVSAGYKIAICEQLEDP-----SASKGIVKRGIIKIITPGTYTDSSFL 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREIIFSE-- 201 +NY+M+ A+++ DISTG F + SN ++ +I + PREI+ E Sbjct: 119 EENKNNYIMSFYLDDNMCAMSFADISTGEFNSTHSNFKEAVVLDEISKFAPREIVLEENI 178 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 KE K F + + Q N FD++I + + N + + K +A Sbjct: 179 KESFIHTIKERFPNISISKIKQEN--FDYNIDNNLKEQFNNFNE----NEYETIVKKSAN 232 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 + YI TQ I + I L ID +R NLEI L +++ SLL +D Sbjct: 233 GLLYYIFHTQKNILSNINKIDYYSIVDYLTIDVNSRRNLEITENLREKTKKGSLLWALDK 292 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGR I PL + I RL+++ + N L +++ LKS D+ R + + Sbjct: 293 TNTAMGGRQLRRWIEQPLINKNPIENRLNAVEELLNNISLQEDLKEDLKSIYDIERIVGK 352 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKN---DLPEELRGAVEKLKKLPQSLEKTLSS 437 + K++ ++ I + + +L N DL + ++ L+ + + L+K L Sbjct: 353 VASKSVNAKELISLKCSI-GKVPYIKEYLSNFKSDLFLNMEQCIDTLEDIHKLLDKALL- 410 Query: 438 MLSDDLPTFK-RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 D P+ ++G +++G + +D R + K+ IASL+ K EET IK+LK+ +N Sbjct: 411 ----DNPSLSVKEGNIIKEGFNEEVDSLREAKSNGKKWIASLEQKEKEETGIKSLKVSYN 466 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GYFIE+T ++ +++ + R+I +QT+SN R+ T EL ++E +I A + Sbjct: 467 KVFGYFIEITKANLNLV-----PEGRYIRKQTLSNAERYITPELKEMEEKILGAEEKLID 521 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 IE + F + + I E + + +++I+ ID +LA +A E NY +P I+ ++++ Sbjct: 522 IEYKLFTEIRDFIEENIDRMQKTARIISDIDCLCSLATVALENNYIKPNINAKDEILIEE 581 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VEK + + FI+ND + D +L L+TGPNM GKST++RQ ALI IM Sbjct: 582 GRHPVVEKVIPKGE---FISNDSLI----DTKENQLILITGPNMAGKSTYMRQVALITIM 634 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+GS+VPA A+I I DK+F+R+G++D+LA+G+STFMVEM E ++IL AT++S V+LD Sbjct: 635 AQIGSFVPAKKANISICDKIFTRIGASDDLAAGKSTFMVEMWEVSNILKNATSKSLVLLD 694 Query: 737 EIGRGTATLDGLSIAWATIEYL--HETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 E+GRGT+T DGLSIAW+ IEY+ ++ RC+ L ATH+HELT L +++ N ++ VS+ Sbjct: 695 EVGRGTSTYDGLSIAWSVIEYICNNKNLRCKTLFATHYHELTKLEDNIEGVKNYSVSVSE 754 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 I+FL K+I G AD SYGI+V KLAGLP+ VI+RA +IL+ E Sbjct: 755 LENEIVFLRKIIKGGADQSYGIEVAKLAGLPSPVINRAKEILQHIE 800 >gi|291522251|emb|CBK80544.1| DNA mismatch repair protein MutS [Coprococcus catus GD/7] Length = 882 Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust. Identities = 321/896 (35%), Positives = 515/896 (57%), Gaps = 48/896 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD--IPM 83 TPMM+QY+ IK D ++FYR+GDFYE+F+DDAL ASR L ITLT GK+ G++ PM Sbjct: 5 TPMMQQYMAIKEQYKDCILFYRLGDFYEMFYDDALTASRELEITLT--GKNCGQEERAPM 62 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVP H + Y+ KL+ G+++AICEQ E P +AK +V+R V+R+VTPGT Q Sbjct: 63 CGVPYHAVDVYLNKLVAKGYKVAICEQAEDPKQAK-----GIVKREVIRIVTPGTNLSQQ 117 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEK 202 L +NYLM + ++ +A DISTG F + + L +I R P EII ++ Sbjct: 118 ALDEGRNNYLMCLVYDNNQFGLAITDISTGDFYTTEVATLKELYDEIHRFSPSEIICNDS 177 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFF-DHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 F+ +V+V+ + ++ D ++S +I +++ + ++D G T A Sbjct: 178 FYMSGASLDDFKDRLHVSVSTLDTWYMDEAVSVQKIKEHFKVASLDGLGLTDFPSGTLAV 237 Query: 262 AAIS-YIKKTQ--MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKT 317 A+ Y+ +TQ ++ T P R + IDSA NLE++ TL +++ SLL Sbjct: 238 GALLLYLYETQKNTLDNLTKITPYRSG--GYMIIDSATNRNLELIETLREKQKKGSLLWV 295 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D + T G RL I PL + KI R D++ + I I++ L + D+ R Sbjct: 296 LDKTKTAMGARLMRNWIEQPLIEKKKITARQDAVEELYNDMITREEIREYLNAVYDLERL 355 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 ++R+ P+D+ + + I + L EL+ E++ L + + + Sbjct: 356 VTRISYRTANPRDLIAFKTSL-GMIPPVKQLLSQAKSAELKEIDERMDCL-EDIYDLIEK 413 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + D+ P R+GG +++G + +D+ R R + K +A L+ + E+T IKNL++++N Sbjct: 414 SIQDEPPIMIREGGMIKEGYNEDVDKFRLSRTEGKTWLAELEAREKEKTGIKNLRVRYNK 473 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY++EVT+S ++ +D + +QT++N R+ T EL +LE+ I A + + Sbjct: 474 VFGYYLEVTNSYKELVPED------WTRKQTLANAERYITPELKELEDMILGAEDKLAAL 527 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + + + ++I EQ + ++ IA +D+ +LA +A+ +Y RP I+ ++ G Sbjct: 528 EYDLYCEVRDSIGEQVVRIQETAKAIAHLDVLASLACVAQSNDYVRPSINTKGVIDIQGG 587 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VEK +++ FI ND L D + ++ ++TGPNM GKST++RQ+ALIV+MA Sbjct: 588 RHPVVEK---MNNNQMFIDNDTYL----DNKNHRISIITGPNMAGKSTYMRQSALIVLMA 640 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+GS+VPA A+IGIVD++F+RVG++D+LASG+STFMVEM E A+IL AT++S +ILDE Sbjct: 641 QIGSFVPAKSANIGIVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSRSLLILDE 700 Query: 738 IGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 IGRGT+T DGLSIAWA +E++ + L ATH+HELT+L L +N + V + Sbjct: 701 IGRGTSTFDGLSIAWAVVEHISNPKLLGAKTLFATHYHELTELEGKLDSVNNYCIAVREQ 760 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE-------------KL 842 + IIFL K+I G AD SYGIQV +LAG+P++VI RA +I E + Sbjct: 761 GDDIIFLRKIIRGGADKSYGIQVARLAGVPDSVIDRAKEIASWLEETDVTDKAKNLQVRT 820 Query: 843 YHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ +R P + + S ++ D ++++ L++ M+P+ AL TLY ++ Sbjct: 821 SAKKKEVVREAVPA-EKQMSLFDIYPADHPVLKELAELDVSNMTPIQALNTLYELQ 875 >gi|302871703|ref|YP_003840339.1| DNA mismatch repair protein MutS [Caldicellulosiruptor obsidiansis OB47] gi|302574562|gb|ADL42353.1| DNA mismatch repair protein MutS [Caldicellulosiruptor obsidiansis OB47] Length = 863 Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust. Identities = 317/886 (35%), Positives = 506/886 (57%), Gaps = 44/886 (4%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 ++ TPMM+QY+EIK D ++F+R+GDFYE+FF+DA++AS+ L I LT R + Sbjct: 1 MQELTPMMQQYMEIKQKVKDCILFFRLGDFYEMFFEDAIVASKELEIALTSRDCGNNEKA 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A YI KLI+ G+++AICEQ+E P AK +V+R + R++TPGT + Sbjct: 61 PMCGVPYHSATSYIAKLIEKGYKVAICEQVEDPKLAK-----GIVKREITRIITPGTFID 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD--RLISDIMRIDPREIIF 199 + T +N++ ++R R+E+A+ ++D+STG D +L+++I + +P EI+ Sbjct: 116 ENF--STANNFICCISRNRSEFALTFVDVSTGEMYSCLIEEDLQKLLNEIGKYNPSEILI 173 Query: 200 SEKELSHAEYKSLFETLGN--VAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 S E L+E L + Q F D I + N+ +D S Sbjct: 174 SRSE------DELYEYLKKNCTSFVQMIEFVDLQECYEVIENQINVGKIDERLILS---- 223 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLK 316 + Y+ +TQ ++ I E +Q+ L ID + NLE+ ++ S++ SLL Sbjct: 224 --VGNLLKYLTETQKISFDYIRRFEFYRVQNYLQIDINTKRNLELTESIIQRSKKNSLLG 281 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D + T G RL + I PL D +IN RLDS+ + ++ I+++L D+ R Sbjct: 282 ILDQTKTSMGSRLLKKWIERPLIDVIEINRRLDSVEQLKSSYSILVQIEELLSRMYDIER 341 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 S+ KD+ ++ I + L L + + L+ E L + + + Sbjct: 342 LSSKFAYKNVNAKDLLSLKRSIEV-LPALKKLLSSFSAQLLKEIYEDFDTL-EDIHSLID 399 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 S +++D P ++ G ++DG + +D R++ SK ++ + K T IKNL+I +N Sbjct: 400 SSINEDAPVTLKECGIIKDGFNEEVDRLRNISKNSKELLVQYEEKERNLTGIKNLRIGYN 459 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+IEVT S+ S++ DR+I +QT++N R+ T EL LE+ I A + Sbjct: 460 KVFGYYIEVTKSNYSLVP------DRYIRKQTLANAERYVTEELKKLEDEILGADQKLIE 513 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E + F + + I Q E + + IAI+D+ + A +A + Y RP + +K+ Sbjct: 514 LEYQLFCEIRDRIEAQIERIQKTASYIAILDVLCSFARIAIDNEYVRPNVYLGDKIYIKN 573 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VEK + + + FI ND +L D+ ++ ++TGPNM GKST++RQ ALIVIM Sbjct: 574 GRHPVVEKMIGRGN---FIPNDTEL----DQVENRVLIITGPNMAGKSTYMRQVALIVIM 626 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQMG +VPA AHIGIVDK+FSR+G++D+++SG+STFMVEM E A+IL AT +S +I D Sbjct: 627 AQMGCFVPADEAHIGIVDKIFSRIGASDDISSGQSTFMVEMSEVANILKNATPKSLIIFD 686 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 E+GRGT+T DGLSIAWA +EY+ + ++ + L ATH+HELT+L + + N + V + Sbjct: 687 EVGRGTSTYDGLSIAWAVLEYVADKSKIGAKTLFATHYHELTELEEKIPGVKNYRVDVKE 746 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 + ++FL K++ G D SYGI V +LAG+P V+ RA +ILK E+ N+K +R Sbjct: 747 EGKNVVFLRKIVRGGCDSSYGIHVARLAGIPEEVLKRAEEILKQLEEA-DINRKSIRKLR 805 Query: 855 PEIQTK--ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 EI+ + E + S + ++KI+ L++ ++PL AL L +K Sbjct: 806 KEIKKEFTEQIDFFSYKKEEIIDKIEKLDILNITPLQALNILSELK 851 >gi|170755080|ref|YP_001781348.1| DNA mismatch repair protein MutS [Clostridium botulinum B1 str. Okra] gi|189030762|sp|B1IM68|MUTS_CLOBK RecName: Full=DNA mismatch repair protein mutS gi|169120292|gb|ACA44128.1| DNA mismatch repair protein MutS [Clostridium botulinum B1 str. Okra] Length = 932 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 305/825 (36%), Positives = 487/825 (59%), Gaps = 38/825 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY+E+K D ++F+R+GDFYE+FF+DA +AS+ L + LT R L + PMCG Sbjct: 4 TPMMRQYLEVKESCKDCILFFRLGDFYEMFFEDAKVASKELELVLTGRDCGLEERAPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H AN YI +L+ G++IAICEQ+E P +K +V+R +++++TPGT T+ L Sbjct: 64 IPYHAANTYIGRLVSAGYKIAICEQLEDP-----SASKGIVKRGIIKIITPGTYTDSSFL 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREIIFSEKE 203 +NY+M+ A+++ DISTG F + SN ++ +I + PREI+ E+ Sbjct: 119 EENKNNYIMSFYLDDNMCAMSFADISTGEFNSTHSNFKEAVVLDEISKFAPREIVL-EEN 177 Query: 204 LSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 + + ++ E N+++++ FD++I + + N + + K +A Sbjct: 178 IKESFIHTIKERFPNISISKIKEENFDYNIDNNLKEQFNNFNE----NEYETIVKKSANG 233 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYS 321 + YI TQ I + I L ID +R NLEI L +++ SLL +D + Sbjct: 234 LLYYIFHTQKNILSNINKIDYYSIVDYLTIDVNSRRNLEITENLREKTKKGSLLWVLDKT 293 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T GGR I PL + I RL+++ + N L +++ LKS D+ R + ++ Sbjct: 294 NTAMGGRQLRRWIEQPLINKNPIENRLNAVEELLNNISLQEDLKEDLKSIYDIERIVGKV 353 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKN---DLPEELRGAVEKLKKLPQSLEKTLSSM 438 K++ ++ I + + +L N DL + ++ L+ + + L+K L Sbjct: 354 ASKSVNAKELISLKCSI-GKVPYIKKYLSNFKSDLFLNMEQCIDTLEDIHKLLDKALL-- 410 Query: 439 LSDDLPTFK-RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 D P+ ++G +++G + +D R + K+ IASL+ K EET IK+LK+ +N Sbjct: 411 ---DNPSLSVKEGNIIKEGFNEEVDSLREAKSNGKKWIASLEQKEKEETGIKSLKVSYNK 467 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GYFIE+T ++ +++ + R+I +QT+SN R+ T EL ++E +I A + I Sbjct: 468 VFGYFIEITKANLNLV-----PEGRYIRKQTLSNAERYITPELKEMEEKILGAEEKLIDI 522 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + F + + I E + + +++I+ ID +LA +A E NY +P I+ ++++G Sbjct: 523 EYKLFTKIRDFIEENIDRMQKTARIISDIDCLCSLATVALENNYIKPNINAKNEILIEEG 582 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VEK + + FI+ND + D +L L+TGPNM GKST++RQ ALI IMA Sbjct: 583 RHPVVEKVIPKGE---FISNDSLI----DTKENQLILITGPNMAGKSTYMRQVALITIMA 635 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+GS+VPA A+I I DK+F+R+G++D+LA+G+STFMVEM E ++IL AT++S V+LDE Sbjct: 636 QIGSFVPAKKANISICDKIFTRIGASDDLAAGKSTFMVEMWEVSNILKNATSKSLVLLDE 695 Query: 738 IGRGTATLDGLSIAWATIEYL--HETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 +GRGT+T DGLSIAW+ IEY+ ++ RC+ L ATH+HELT L +++ N ++ VS+ Sbjct: 696 VGRGTSTYDGLSIAWSVIEYICNNKNLRCKTLFATHYHELTKLEDNIEGVKNYSVSVSEL 755 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 I+FL K+I G AD SYGI+V KLAGLP+ VI+RA +IL+ E Sbjct: 756 ENEIVFLRKIIRGGADQSYGIEVAKLAGLPSPVINRAKEILQHIE 800 >gi|163802978|ref|ZP_02196865.1| DNA mismatch repair protein [Vibrio sp. AND4] gi|159173268|gb|EDP58096.1| DNA mismatch repair protein [Vibrio sp. AND4] Length = 853 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 311/887 (35%), Positives = 488/887 (55%), Gaps = 52/887 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 + TPMM+QY+++K+ NP+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IP Sbjct: 5 QKHTPMMQQYLKLKAENPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIP 64 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+T++ Sbjct: 65 MAGVPFHAVEGYLAKLVQLGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTVTDE 119 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFK-ISTSNHDRLISDIMRIDPREIIFSE 201 LLS N + ++ + ++ A +DI++G F+ + + + +++ R PRE++F E Sbjct: 120 ALLSERVDNLIASIYHHKGKFGYATLDITSGRFQLVEPETEEAMAAELQRTAPRELLFPE 179 Query: 202 KELSHAEYKSLFETLG-----NVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 FE + N +P F+ ++ ++ + + FG + + Sbjct: 180 D----------FEPIHLMSNRNGNRRRPVWEFELDTAKQQLNQQFGTRDLVGFGVEHASL 229 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA I Y+K TQ P I + ++ +D+A R NLE+ + LSG + +L Sbjct: 230 GLCAAGCLIQYVKDTQRTALPHIRSLTVDRQDHSVILDAATRRNLELTQNLSGGSDNTLA 289 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 + +D+ T G R+ + P+ ++ RLDSI + + + IQ I K D+ Sbjct: 290 EVLDHCATPMGSRMLKRWLHQPMRCVDTLDNRLDSIGELKEQGLFTD-IQPIFKQIGDIE 348 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 R L+RL + P+D+A +R ++ + + L + ++L + ++ LE+ Sbjct: 349 RILARLALRSARPRDMARLRHAMQQLPELEAVTSSLAHPYLKKLAEFAAPMDEVCDLLER 408 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + ++ P R+GG + +G +A LDE R L D + + L+ E I LK+ Sbjct: 409 AIK----ENPPVVIREGGVIAEGYNAELDEWRKLADGATEYLEKLEADERERHGIDTLKV 464 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N G+FI+V+ + ++ ++ RQT+ N R+ EL + E+++ N+ + Sbjct: 465 GYNAVHGFFIQVSRGQSHLVPP------HYVRRQTLKNAERYIISELKEHEDKVLNSKSK 518 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E + +E L + ++ E + N + I+ +D+ LA A +YCRP +D Sbjct: 519 ALAVEKKLWEELFDLLMPHLEKMQNLASAISQLDVLQNLAERADSLDYCRPTLDKEAGIR 578 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 ++ GRHP+VE Q +S+PFIAN +L C N K + ++TGPNMGGKST++RQ ALI Sbjct: 579 IQSGRHPVVE----QVTSEPFIANPIEL-CSNRK----MLIITGPNMGGKSTYMRQTALI 629 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +GSYVPA AHIG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V Sbjct: 630 ALMAHIGSYVPAESAHIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLV 689 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA+ E+L L ATH+ ELT+L L N L Sbjct: 690 LMDEIGRGTSTYDGLSLAWASAEWLATQIGAMTLFATHYFELTELPNLLPNLANVHLDAV 749 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 + + I F+H V G A SYG+ V LAG+P VI A + L E+L N Sbjct: 750 EHGDSIAFMHAVQEGAASKSYGLAVAGLAGVPKPVIKNARNKLSQLEQLGQGNDS----- 804 Query: 854 YPEIQTKESKNNLS--KNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P + N LS + + +N D+++P AL+ LY +K Sbjct: 805 -PRASRVDVANQLSLIPEPSEVEQAVSNINPDDLTPRQALEELYRLK 850 >gi|167745632|ref|ZP_02417759.1| hypothetical protein ANACAC_00324 [Anaerostipes caccae DSM 14662] gi|167654944|gb|EDR99073.1| hypothetical protein ANACAC_00324 [Anaerostipes caccae DSM 14662] Length = 872 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 314/887 (35%), Positives = 502/887 (56%), Gaps = 40/887 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY+ IK N D ++FYR+GDFYE+FFDDAL ASR L ITLT + + + PMCG Sbjct: 5 TPMMEQYMAIKEQNQDCILFYRLGDFYEMFFDDALTASRELEITLTGKNCGMEERAPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H + Y+ KL++ G+++AICEQ+E P + K +V+R V+R+VTPGT Q L Sbjct: 65 VPFHAVDSYLNKLVEKGYKVAICEQVEDP-----KQTKGIVKREVIRIVTPGTNISQQSL 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEK-E 203 +NYLM + + ++ +D++TG F+ ++ + +++ +I + P EII ++ Sbjct: 120 EDEKNNYLMCIFCSDDSFGLSVVDVTTGDFRTTSMDELHKVVDEIFKFAPAEIICNDAFM 179 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAA 262 +S + + + + LG + +FD E+ I +++ ++ G S + K A A Sbjct: 180 ISGVDIEFIKDKLGVSVSNIDHYYFDEEQGEAAIKSQFHVGNLNGLGLSDHPMGKIATGA 239 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYS 321 + Y+ +TQ + + + IDS++R NLE+ TL +++ SLL +D + Sbjct: 240 LLLYLHETQKNALNHLMSVSPYETSEYMIIDSSSRRNLELCETLRDKKKKGSLLGVLDKT 299 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G RL I PL D KI R D++ + I I++ L D+ R ++++ Sbjct: 300 KTAMGARLLRSMIEQPLIDRVKIEERYDALTSLTKQAIAREEIREYLNPVYDLERLMTKV 359 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 P+D+ ++ ++ + + L+ L G E L L + + L + + Sbjct: 360 SYQTINPRDMIALKVSLQ-WLPPIKTILEECGDSLLSGLREDLDTL-EDVAGLLEDAILE 417 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + P ++GG ++DG +D+ + + K+ + L+ + T IK LK+K N GY Sbjct: 418 EPPIAVKEGGIIKDGFSEQIDQLKRAKTDGKQWLMQLEERERRATGIKTLKVKFNKVFGY 477 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +++VT+S KD + + +I +QT++N R+TT EL L + I A + +E E+ Sbjct: 478 YLDVTNSY-----KD-KVPEHYIRKQTLTNSERYTTEELNKLADTILGAEDRLCALEYET 531 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 F + + + E + + VIA +D+ +LA +A++ Y RP ++ +K+GRHP+ Sbjct: 532 FASIRETLAGEMERIKKTAGVIAYLDVLCSLACVAEQNGYVRPKLNTKGLIDIKEGRHPV 591 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE+ + S+ FI+ND L D ++ ++TGPNM GKST++RQ+ALIV+MAQ+GS Sbjct: 592 VEQMM---SNDMFISNDTYL----DSKRHRVSIITGPNMAGKSTYMRQSALIVLMAQIGS 644 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA A+IGIVD++F+RVG++D+LASG+STFMVEM E A+IL AT S +ILDEIGRG Sbjct: 645 FVPAQKANIGIVDRIFTRVGASDDLASGQSTFMVEMSEVANILRNATKDSLLILDEIGRG 704 Query: 742 TATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 T+T DGLSIAWA +EY+ + L ATH+HELT+L + +N + V + + I Sbjct: 705 TSTYDGLSIAWAVVEYISNPKLLGAKTLFATHYHELTELEGKIGSVNNYCIAVKEQGDNI 764 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 +FL K++ G AD SYGIQV KLAG+P+ VI RA +I+ + D+ +IQ Sbjct: 765 VFLRKIVKGGADKSYGIQVAKLAGVPDMVIQRAKEIVSEL------SDSDIVSQAQKIQV 818 Query: 860 KESKNNLS--KNDKL------FVEKIKCLNLDEMSPLTALKTLYAVK 898 LS ND F+ +I+ +L M+PL AL LY ++ Sbjct: 819 SSEPQQLSLFANDSEPMMEHPFMAEIRKKDLSSMTPLEALNYLYILQ 865 >gi|260779399|ref|ZP_05888290.1| DNA mismatch repair protein MutS [Vibrio coralliilyticus ATCC BAA-450] gi|260604489|gb|EEX30789.1| DNA mismatch repair protein MutS [Vibrio coralliilyticus ATCC BAA-450] Length = 854 Score = 529 bits (1363), Expect = e-148, Method: Compositional matrix adjust. Identities = 314/893 (35%), Positives = 491/893 (54%), Gaps = 63/893 (7%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 + TPMM+QY+++K+ NPD L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IP Sbjct: 5 QKHTPMMQQYLKLKAENPDILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIP 64 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+T++ Sbjct: 65 MAGVPFHAVEGYLAKLVQLGESVAICEQIGDPATSK-----GPVERQVVRIVTPGTVTDE 119 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSE 201 LLS N + A+ ++ A +D+++G F++ + + +++ R PRE++F E Sbjct: 120 ALLSERIDNLIAAIYHHDGKFGYATLDVTSGRFQLMEPETEEAMAAELQRTAPRELLFPE 179 Query: 202 KELSHAEYKSLFETLGNVAVA-----QPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 FE + +A +P F+ ++ ++ + + FG + + Sbjct: 180 D----------FEPVELMAARNGNRRRPVWEFELDTAKQQLNQQFGTRDLVGFGVEQAHL 229 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA I Y+K TQ P I + ++ +D+A R NLEI + L+G + +L Sbjct: 230 GLCAAGCLIQYVKDTQRTALPHIRSLTYDRQDHSVILDAATRRNLEITQNLAGGTDNTLA 289 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 + ID++ T G R+ + P+ D +N RLD+I+ ++ L + ILK D+ Sbjct: 290 EVIDHTATPMGSRMLKRWLHQPMRDINTLNHRLDAISE-LKELTLFADLHPILKQIGDIE 348 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEK--LKKLPQ-- 429 R L+RL + P+D+A +R ++ LPE E G + L KL Q Sbjct: 349 RILARLALRSARPRDMARLRHAMQQ------------LPELAETMGTLAHPYLTKLGQYA 396 Query: 430 ----SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE 485 ++ + L + ++ P RDGG + +G +A LDE R L D + + ++ E Sbjct: 397 APQEAVCELLERAIKENPPVVIRDGGVIAEGYNAELDEWRKLADGATEYLEKMEQDERER 456 Query: 486 TKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 I LK+ +NN G+FI+V+ + ++ ++ RQT+ N R+ EL + E+ Sbjct: 457 HGIDTLKVGYNNVHGFFIQVSRGQSHLVPP------HYVRRQTLKNAERYIIPELKEHED 510 Query: 546 RITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPI 605 ++ N+ + AL +E + +E L + ++ E L N + I+ ID+ LA A +YCRP+ Sbjct: 511 KVLNSKSKALALEKQLWEELFDLLMPHLEKLQNLASAISQIDVLQNLAERADSLDYCRPV 570 Query: 606 IDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKST 665 + ++ GRHP+VE+ + + PFIAN +L+ K+ ++TGPNMGGKST Sbjct: 571 MSQEPGIHIQSGRHPVVEQVMDE----PFIANPIELNPQR-----KMLIITGPNMGGKST 621 Query: 666 FLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILN 725 ++RQ ALI +MA +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ Sbjct: 622 YMRQTALIALMAHIGSYVPAESAQIGSIDRIFTRIGASDDLASGRSTFMVEMTETANILH 681 Query: 726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRF 785 AT S V++DEIGRGT+T DGLS+AWA+ E+L + L ATH+ ELT+L + Sbjct: 682 NATTNSLVLMDEIGRGTSTYDGLSLAWASAEWLAKELGSMTLFATHYFELTELPNQIPHL 741 Query: 786 HNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH 845 N L + + I F+H V G A SYG+ V LAG+P +VI A L E+L Sbjct: 742 ANVHLDAVEHGDTIAFMHAVQEGAASKSYGLAVAGLAGVPKSVIKNARAKLTQLEQLSQG 801 Query: 846 NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + +I + S L E + ++ D+++P AL+ LY +K Sbjct: 802 ESSSVTSSAVDIANQLS---LIPEPSEVEEALSGIDPDDLTPRQALEELYRLK 851 >gi|229829057|ref|ZP_04455126.1| hypothetical protein GCWU000342_01142 [Shuttleworthia satelles DSM 14600] gi|229792220|gb|EEP28334.1| hypothetical protein GCWU000342_01142 [Shuttleworthia satelles DSM 14600] Length = 895 Score = 529 bits (1363), Expect = e-148, Method: Compositional matrix adjust. Identities = 304/843 (36%), Positives = 496/843 (58%), Gaps = 40/843 (4%) Query: 17 DLEEN---LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR 73 DLE+N LK TPMM YI K NP ++FYR+GDFYE+FFDDA+ SR L +TLT + Sbjct: 6 DLEKNPQFLKDLTPMMEHYIATKRENPTCILFYRLGDFYEMFFDDAISVSRELELTLTGK 65 Query: 74 GKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRL 133 L + PMCGVP H Y+ +L++ G+++AIC+Q+E P EAK +V+R V R+ Sbjct: 66 ACGLPERAPMCGVPYHAVESYLNRLVQKGYKVAICDQLEDPREAK-----GMVKRGVTRI 120 Query: 134 VTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRI 192 VTPGT L +NY++++ + + ++ D+STG F ++ + DR L+ ++ + Sbjct: 121 VTPGTNMNASSLEEGKNNYILSIIYVGNTFGLSAADVSTGDFFVTELDSDRKLMDELSKY 180 Query: 193 DPREIIFSEK-ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG- 250 P E++ ++ + + +L + + +F+ + + ++++++ + G Sbjct: 181 HPSELVCNDSMSMCGLDLDALRDRFHMAISPLESYYFEDEACLNLLREHFHVSDLTALGL 240 Query: 251 -SFSQVEKTAAAAAISYIKKTQ---MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL 306 F + AA A + Y+ +TQ + N I P R + + +D+A R NLE++ TL Sbjct: 241 KDFP-IGSIAAGALLKYLIETQKSDLANMSAIS-PYRGG--NYMLLDAATRRNLELVETL 296 Query: 307 -SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQ 365 + SLL +D + T G R+ RI PL D +I R D+++ + + I I+ Sbjct: 297 REKEKRGSLLWVLDKTRTAMGARMLRSRIEQPLIDEEEIINRYDALDEMLSDMISREEIR 356 Query: 366 KILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLK 425 + L D+ R ++R+ P+D+ + + + + L + ++ ++ + Sbjct: 357 EYLNPVYDLERLITRITYQTANPRDLVAFASSV-AVLPAIRALLADFSSRNMKRILDDMD 415 Query: 426 KLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE 485 L + ++ +SS ++++ P +GG +R G + +D R+ K+ +A L+ + E+ Sbjct: 416 PL-EDIKTLISSAIAEEPPISSHEGGIIRAGYNQEIDRLRAAATDGKQWLAELETREREK 474 Query: 486 TKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 T IKNL+IK+N GY++EVT+S +++ D FI +QT++N RF T EL +LEN Sbjct: 475 TGIKNLRIKYNRVFGYYLEVTNSYLNLVP------DYFIRKQTLTNAERFYTPELKELEN 528 Query: 546 RITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPI 605 I + + L +E E F + + + ++ + ++ IA +D +LA +A++ +CRP Sbjct: 529 TILGSADRLLALENELFCQVRDRVGQEVVRIQKTARAIASLDFYQSLAKVAEDNRFCRPR 588 Query: 606 IDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKST 665 ++ +K+GRHP+VEK L+ FIAND L D S +L ++TGPNM GKST Sbjct: 589 LNKRGILEIKNGRHPVVEKMLRDGD---FIANDTYL----DNKSHRLSIITGPNMAGKST 641 Query: 666 FLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILN 725 ++RQNA+IV+MAQ+GS+VPA A+I +VD++F+RVG++D+LASG+STFMVEM E A+IL Sbjct: 642 YMRQNAIIVLMAQVGSFVPAEAANISVVDRIFTRVGASDDLASGQSTFMVEMSEVANILR 701 Query: 726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLK 783 AT++S +ILDEIGRGT+T DGLSIAWA +EY+ + + L ATH+HELT+L + Sbjct: 702 NATSKSLLILDEIGRGTSTFDGLSIAWAMVEYIANSRLIGAKTLFATHYHELTELEGRID 761 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY 843 +N + V + + I+FL K++PG AD SYGIQV KLAG+P+ VI RA +I E+L Sbjct: 762 GVNNYCVAVKEKGDEIVFLRKIVPGGADRSYGIQVAKLAGVPDGVIERAKEI---SEELS 818 Query: 844 HHN 846 H+ Sbjct: 819 DHD 821 >gi|260914563|ref|ZP_05921031.1| DNA mismatch repair protein MutS [Pasteurella dagmatis ATCC 43325] gi|260631354|gb|EEX49537.1| DNA mismatch repair protein MutS [Pasteurella dagmatis ATCC 43325] Length = 860 Score = 529 bits (1363), Expect = e-148, Method: Compositional matrix adjust. Identities = 332/897 (37%), Positives = 491/897 (54%), Gaps = 59/897 (6%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +NL TPMMRQY+ +K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG G+ Sbjct: 2 DNLDLHTPMMRQYLALKAENPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGHSAGQ 61 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 62 PIPMAGVPYHAVEGYLAKLVQLGESVAICEQIGDPATSK-----GPVERQVVRIVTPGTV 116 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREI 197 +++ LL N + A+ + ++ + +A +DIS+G F+IS DR L +++ RI P EI Sbjct: 117 SDESLLPERQDNLIAALYQEKSRFGLAILDISSGSFQISEPE-DRASLQAELQRISPVEI 175 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 ++ E+ A + L +P F+ + + +N + FG VEK Sbjct: 176 LYCEELADFAAIEHL-----KGLRRRPIWEFELGTAIQLLNRQFNTKDLRGFG----VEK 226 Query: 258 T-----AAAAAISYIKKTQMVNKPTIG----YPEREDIQSTLFIDSAARSNLEILRTLSG 308 AA + Y K TQ P I E+IQ +D+A R NLE+ + L+G Sbjct: 227 AILGLCAAGCLLQYAKDTQRTALPHIQSITLLQNSENIQ----LDAATRRNLELTQNLAG 282 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKIL 368 E +L +D +T G RL I P+ D K+ R I ++ L+ +Q L Sbjct: 283 GTENTLSSVLDKCVTAMGSRLLKRWIHQPIRDRRKLLQRQHIIGALLEQD-LVAQLQPYL 341 Query: 369 KSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP 428 D+ R L+R+ + P+D+ +R + +I + L+N L ++ + + Sbjct: 342 NQIGDMERILARVALRSARPRDLTRLRTALAQLPSIRQI-LENQTSPNLTALLQPIGEFS 400 Query: 429 QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 L+ L L D+ P RDGG + +G +A LDE RSL D + R + L+ + E T I Sbjct: 401 AQLD-LLQRALIDNPPMLIRDGGVIAEGYNAELDEWRSLSDGATRYLEDLERRERESTGI 459 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 LKI N GY+I+++ A ++ ++ RQT+ N R+ EL E+++ Sbjct: 460 DTLKIGFNAVHGYYIQISQGQAH------KAPMHYVRRQTLKNAERYIIPELKTYEDKVL 513 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 A +AL +E + +E + + ++ +L AS +A +D+ LA A+ NY P + Sbjct: 514 KAKGAALALEKQLYEEIFDELLPHLGALQLASLTLAELDVLTNLAERAETLNYVAPQFSD 573 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 +++GRHP+VE+ LK+ PFIAN L+ L ++TGPNMGGKST++R Sbjct: 574 EIGVNIQNGRHPVVEQVLKE----PFIANPVHLTPQR-----HLLIITGPNMGGKSTYMR 624 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q ALI +MA MGS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT Sbjct: 625 QTALITLMAYMGSFVPAESAVIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQAT 684 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA 788 S V++DEIGRGT+T DGLS+AWA E+L + R L ATH+ ELT L + L N Sbjct: 685 ANSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKLRSLTLFATHYFELTVLPEQLAGTANV 744 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ- 847 L + N+ I F+H V G A SYG+ V LAG+P +VI A L EKL N Sbjct: 745 HLDALEHNDTIAFMHSVQEGAASKSYGLAVAALAGVPQSVIKLAKQKLAQLEKLSQQNAD 804 Query: 848 ---KDMRLYYPEIQTKESKNNLSKND---KLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +D+R ++ + + L + D E ++ L+ DE+SP AL LY +K Sbjct: 805 QRIQDLR----QLNQTQGELALMEEDDGKNAVWEMLEKLDPDELSPKQALAYLYQLK 857 >gi|50084669|ref|YP_046179.1| DNA mismatch repair protein MutS [Acinetobacter sp. ADP1] gi|81695872|sp|Q6FC54|MUTS_ACIAD RecName: Full=DNA mismatch repair protein mutS gi|49530645|emb|CAG68357.1| methyl-directed mismatch repair, recognize exocyclic adducts of guanosine [Acinetobacter sp. ADP1] Length = 881 Score = 529 bits (1363), Expect = e-148, Method: Compositional matrix adjust. Identities = 340/903 (37%), Positives = 505/903 (55%), Gaps = 60/903 (6%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L S TPMM+QY ++K + +L+FYRMGDFYELFFDDA A++ LGITLT RGK G+ Sbjct: 9 DLSSYTPMMQQYFKVKLEHQHALLFYRMGDFYELFFDDARKAAKLLGITLTHRGKANGEP 68 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM GVP H A Y+ +L++ G +AICEQ+ A R K+ + R VVR++TPGT+T Sbjct: 69 IPMAGVPYHAAEGYLARLVRAGQTVAICEQVGEGENAGSRC-KAPMERKVVRIITPGTIT 127 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH--DRLISDIMRIDPREII 198 +D LL S+ L+A+ + + IA +D+S IFK+ ++L ++ R+ P EI+ Sbjct: 128 DDALLGSYQSSNLVALCIQQNKIGIALLDLSASIFKVQQHEFKTEQLYIELARLMPSEIV 187 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 E + + + + + +PNV F+ + ++ + D + +TT+ FG + K Sbjct: 188 VDEDLVDQNILEQIKKQIECSITKRPNVDFNLNNAQKTLCDQFGVTTLSGFGIDHLPLAK 247 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFI--DSAARSNLEILRTLSGSREQSLL 315 AAAA I Y K+TQ P I + E QST FI D R NLEI+ L SL Sbjct: 248 AAAAALIHYAKETQKTALPHIRSIQLE--QSTDFIALDPITRRNLEIIDPLF-EHGTSLF 304 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILI----NPIQKILKSS 371 I+ T GGRL + + P+ D+ ++ RLD+ +LI +P++ +LK Sbjct: 305 NLINDCQTAMGGRLLSRILMQPIRDTAILDARLDATE-----QLLIGYHESPVRLVLKEI 359 Query: 372 PDVPRSLSRLKIGRGEPKD----------IAVIRDGIRSGINILNLFLKNDLPEELRGAV 421 D+ R LSR+ +G P+D I +R + I + L N+L EL G Sbjct: 360 GDIERVLSRVALGTARPRDLVQLRQACAQIPFLRHALLPAIQTKSSKLLNELDHEL-GDF 418 Query: 422 EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLK 481 + L +L L S + ++ P RDG + +G DA LDE R +RD + + + L++K Sbjct: 419 KDLHQL-------LLSAIVENPPVLLRDGNVIAEGYDAELDELRKIRDHAGQFLVDLEIK 471 Query: 482 YAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELI 541 E + I LKI +N GY+IE+T + A ++ +I RQT+ N R+ T EL Sbjct: 472 ERESSGIPTLKIGYNRVSGYYIELTRAQAE------QAPAYYIRRQTLKNAERYITPELK 525 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 E+++ ++ + AL E FE L + + +L S IA ID+ A A+ QN+ Sbjct: 526 SFEDKVLSSESRALAREKLLFESLLETLKKNIANLQMMSSAIAQIDVLANFAHQARLQNW 585 Query: 602 CRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 RP + DGRHP+VE S P+ ND L + ++ ++TGPNMG Sbjct: 586 NRPDFSPEIGIKIHDGRHPVVEAL----SKTPYTPNDTFLD-----SQHRMAIITGPNMG 636 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKSTF+RQ ALI ++A GSYVPA A +G +D++F+R+GSAD+L++G+STFMVEM ET+ Sbjct: 637 GKSTFMRQTALISLLAYCGSYVPAKSAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETS 696 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS 781 IL+ AT+QS V++DE+GRGT+T DGLS+AWA + L + +C L ATH+ ELT+L S Sbjct: 697 QILHHATHQSLVLMDEVGRGTSTYDGLSLAWACVLDLTKRIKCLCLFATHYFELTELG-S 755 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 N + + N +I LHKV G A S+G+QV KLAG+P +VI A LK EK Sbjct: 756 ESAIDNYHVTAKEMNGNLILLHKVQHGPASQSHGLQVAKLAGIPASVIKEAQKRLKILEK 815 Query: 842 LYHHN-----QKDMRLYYPEI-QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 Q D+ PE+ Q E+K + K + ++ +K L++D ++P AL+ LY Sbjct: 816 QQQQYFQTAVQNDL-FAIPELPQIDETKIEIKKTSPV-LDHLKQLDVDSLTPRQALEALY 873 Query: 896 AVK 898 +K Sbjct: 874 QLK 876 >gi|304440469|ref|ZP_07400358.1| DNA mismatch repair protein MutS [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371221|gb|EFM24838.1| DNA mismatch repair protein MutS [Peptoniphilus duerdenii ATCC BAA-1640] Length = 864 Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust. Identities = 326/895 (36%), Positives = 514/895 (57%), Gaps = 60/895 (6%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L+ TPMMRQY+E K D+++FYR+GDFYE+FFDDA+ AS+ L + LT RG L Sbjct: 5 DLEKVTPMMRQYLETKKNYEDAILFYRLGDFYEMFFDDAITASKELDLALTGRGGGLDDK 64 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCG+P H +Y+ KLI G+++AIC+Q+E P AK +V+R V ++VTPGT T Sbjct: 65 IPMCGIPHHVFKNYLSKLIDKGYKVAICDQVEDPKLAK-----GIVKREVTKVVTPGTFT 119 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTS-------NHDRLISDIM-RI 192 + + +N++ ++ +I ++D STG+ +STS + D I I+ +I Sbjct: 120 DTDYIEAGSNNFMTSLYVRDNSVSITYVDYSTGML-LSTSKVFLNEGSRDEYIDLIVSKI 178 Query: 193 DPREIIF---SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESR---IADYY--NIT 244 P+E++ +E+ + K+ N+ + + H SE + + Y NI+ Sbjct: 179 SPKEVVINSDAERYFDKSVLKNYINE-KNIEEIKNKEYLKHLSSELKDELLNSKYRENIS 237 Query: 245 TVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILR 304 S V KT +++I K +N ++ + +D + NLEIL+ Sbjct: 238 LEILLNYLSNVSKTK----LNHIVKIADIN-----------LEQKMILDENSMRNLEILK 282 Query: 305 TLSGSREQ-SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINP 363 L+ +R+ SLL+ +DY+ T G RL I PL + +I R D + F + IL++ Sbjct: 283 GLNSNRKSGSLLEVLDYTKTSMGQRLLRRWIEEPLLNVDEIKKRQDYVEEFKSDFILLDD 342 Query: 364 IQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEK 423 ++ IL S D+ R + ++ P + ++ + S + L +L+ + L + Sbjct: 343 VRSILSSIIDMERQMVKISDNEINPNEFNALKGSLASVME-LKSYLEGSNFKNLNEISYE 401 Query: 424 LKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 LK L +E+ + SM+ +D P D F++DG + LDE L K+ + L+ K Sbjct: 402 LKPLYNIIEE-IDSMIVEDAPVKTVDVKFIKDGYNEELDELFRLSKDGKKFLIDLEAKEK 460 Query: 484 EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDL 543 EET IKNLKIK+N LGYFIEVT S+ ++ +R+I +QT+ RF T+EL ++ Sbjct: 461 EETGIKNLKIKYNKILGYFIEVTKSALDMVP------ERYIRKQTLVGSERFFTIELKEM 514 Query: 544 ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCR 603 E++I NA + A ++L+ ++ L + + L S++++ ID+ LA A E + R Sbjct: 515 ESKILNAHDEANSLQLKLYDNLIENFKKYTSLLLEVSEIVSRIDVLQGLAKSAIENRFIR 574 Query: 604 PIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 P ++ I+KDGRHPIVE + S FI ND L DKN + ++TGPNM GK Sbjct: 575 PELNEDNTIIIKDGRHPIVEFKNRDDS---FIPNDTILDM--DKNL--IHIITGPNMAGK 627 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 ST++RQ ALIVIMAQ+GS+VPA +IGIVD++F+R+G++DNL+ G STFMVEM E A+I Sbjct: 628 STYMRQIALIVIMAQIGSFVPAKSCNIGIVDRIFTRIGASDNLSKGESTFMVEMKEVANI 687 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLK 783 L AT++S +ILDE+GRGT+T DG+SIAW+ +EY+ E + + ATH+HEL+ + ++ K Sbjct: 688 LKNATDKSLIILDEVGRGTSTFDGMSIAWSIVEYISENIGAKTVFATHYHELSKIEETYK 747 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY 843 N ++V E IIFL K++ G D+SYGI V KLAG+ V RA +ILK+ EK Sbjct: 748 NVSNLNIKVKKDGEEIIFLRKIVEGWTDNSYGIDVAKLAGIDEKVTKRAEEILKSLEKTK 807 Query: 844 HHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 N K + ++ ++S ++ +++ F++ +K L+ D ++P AL +Y +K Sbjct: 808 DLNVKVKK----DVVFEKSLFDVKRDN--FIDDLKKLDPDSLTPREALDLVYEIK 856 >gi|15217083|gb|AAK92494.1|AF400582_3 mismatch repair protein [Acinetobacter sp. ADP1] Length = 881 Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust. Identities = 340/903 (37%), Positives = 505/903 (55%), Gaps = 60/903 (6%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L S TPMM+QY ++K + +L+FYRMGDFYELFFDDA A++ LGITLT RGK G+ Sbjct: 9 DLSSYTPMMQQYFKVKLEHQHALLFYRMGDFYELFFDDARKAAKFLGITLTHRGKANGEP 68 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM GVP H A Y+ +L++ G +AICEQ+ A R K+ + R VVR++TPGT+T Sbjct: 69 IPMAGVPYHAAEGYLARLVRAGQTVAICEQVGEGENAGSRC-KAPMERKVVRIITPGTIT 127 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH--DRLISDIMRIDPREII 198 +D LL S+ L+A+ + + IA +D+S IFK+ ++L ++ R+ P EI+ Sbjct: 128 DDALLGSYQSSNLVALCIQQNKIGIALLDLSASIFKVQQHEFKTEQLYIELARLMPSEIV 187 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 E + + + + + +PNV F+ + ++ + D + +TT+ FG + K Sbjct: 188 VDEDLVDQNILEQIKKQIECSITKRPNVDFNLNNAQKTLCDQFGVTTLSGFGIDHLPLAK 247 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFI--DSAARSNLEILRTLSGSREQSLL 315 AAAA I Y K+TQ P I + E QST FI D R NLEI+ L SL Sbjct: 248 AAAAALIHYAKETQKTALPHIRSIQLE--QSTDFIALDPITRRNLEIIDPLF-EHGTSLF 304 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILI----NPIQKILKSS 371 I+ T GGRL + + P+ D+ ++ RLD+ +LI +P++ +LK Sbjct: 305 NLINDCQTAMGGRLLSRILMQPIRDTAILDARLDATE-----QLLIGYHESPVRLVLKEI 359 Query: 372 PDVPRSLSRLKIGRGEPKD----------IAVIRDGIRSGINILNLFLKNDLPEELRGAV 421 D+ R LSR+ +G P+D I +R + I + L N+L EL G Sbjct: 360 GDIERVLSRVALGTARPRDLVQLRQACAQIPFLRHALLPAIQTKSSKLLNELDHEL-GDF 418 Query: 422 EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLK 481 + L +L L S + ++ P RDG + +G DA LDE R +RD + + + L++K Sbjct: 419 KDLHQL-------LLSAIVENPPVLLRDGNVIAEGYDAELDELRKIRDHAGQFLVDLEIK 471 Query: 482 YAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELI 541 E + I LKI +N GY+IE+T + A ++ +I RQT+ N R+ T EL Sbjct: 472 ERESSGIPTLKIGYNRVSGYYIELTRAQAE------QAPAYYIRRQTLKNAERYITPELK 525 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 E+++ ++ + AL E FE L + + +L S IA ID+ A A+ QN+ Sbjct: 526 SFEDKVLSSESRALAREKLLFESLLETLKKNIANLQMMSSAIAQIDVLANFAHQARLQNW 585 Query: 602 CRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 RP + DGRHP+VE S P+ ND L + ++ ++TGPNMG Sbjct: 586 NRPDFSPEIGIKIHDGRHPVVEAL----SKTPYTPNDTFLD-----SQHRMAIITGPNMG 636 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKSTF+RQ ALI ++A GSYVPA A +G +D++F+R+GSAD+L++G+STFMVEM ET+ Sbjct: 637 GKSTFMRQTALISLLAYCGSYVPAKSAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETS 696 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS 781 IL+ AT+QS V++DE+GRGT+T DGLS+AWA + L + +C L ATH+ ELT+L S Sbjct: 697 QILHHATHQSLVLMDEVGRGTSTYDGLSLAWACVLDLTKRIKCLCLFATHYFELTELG-S 755 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 N + + N +I LHKV G A S+G+QV KLAG+P +VI A LK EK Sbjct: 756 ESAIDNYHVTAKEMNGNLILLHKVQHGPASQSHGLQVAKLAGIPASVIKEAQKRLKILEK 815 Query: 842 LYHHN-----QKDMRLYYPEI-QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 Q D+ PE+ Q E+K + K + ++ +K L++D ++P AL+ LY Sbjct: 816 QQQQYFQTAVQNDL-FAIPELPQIDETKIEIKKTSPV-LDHLKQLDVDSLTPRQALEALY 873 Query: 896 AVK 898 +K Sbjct: 874 QLK 876 >gi|322806037|emb|CBZ03604.1| DNA mismatch repair protein MutS [Clostridium botulinum H04402 065] Length = 932 Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust. Identities = 305/825 (36%), Positives = 486/825 (58%), Gaps = 38/825 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY+E+K D ++F+R+GDFYE+FF+DA +AS+ L + LT R L + PMCG Sbjct: 4 TPMMRQYLEVKESCKDCILFFRLGDFYEMFFEDAKVASKELELVLTGRDCGLEERAPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H AN YI +L+ G++IAICEQ+E P +K +V+R +++++TPGT T+ L Sbjct: 64 IPYHAANTYIGRLVSAGYKIAICEQLEDP-----SASKGIVKRGIIKIITPGTYTDSSFL 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREIIFSEKE 203 +NY+M+ A+++ DISTG F + SN ++ +I + PREI+ E Sbjct: 119 EENKNNYIMSFYLDDNMCAMSFADISTGEFNSTHSNFKEAVVLDEISKFAPREIVLGEN- 177 Query: 204 LSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 + + ++ E N+++++ FD++I + + N + + K +A Sbjct: 178 IKESFIHTIKERFPNISISKIKEENFDYNIDNNLKEQFNNFNE----NEYETIVKKSANG 233 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYS 321 + YI TQ I + I L ID +R NLEI L +++ SLL +D + Sbjct: 234 LLYYIFHTQKNILSNINKIDYYSIVDYLTIDVNSRRNLEITENLREKTKKGSLLWVLDKT 293 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T GGR I PL + + I RL+++ + N L ++ LKS D+ R + ++ Sbjct: 294 NTAMGGRQLRRWIEQPLINKSPIENRLNAVEELLNNISLQEDLKGDLKSIYDIERIVGKV 353 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKN---DLPEELRGAVEKLKKLPQSLEKTLSSM 438 K++ ++ I + + +L N DL + ++ L+ + + L+K L Sbjct: 354 ASKSVNAKELISLKCSI-GKVPYIKKYLSNFKSDLFLNMEQCIDTLEDIHKLLDKALL-- 410 Query: 439 LSDDLPTFK-RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 D P+ ++G +++G + +D R + K+ IASL+ K EET IK+LK+ +N Sbjct: 411 ---DNPSLSVKEGNIIKEGFNEEVDSLREAKSNGKKWIASLEQKEKEETGIKSLKVSYNK 467 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GYFIE+T ++ +++ + R+I +QT+SN R+ T EL ++E +I A + I Sbjct: 468 VFGYFIEITKANLNLV-----PEGRYIRKQTLSNAERYITPELKEMEEKILGAEEKLIDI 522 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + F + + I E + + +++I+ ID +LA +A E NY +P I+ ++++G Sbjct: 523 EYKLFTKIRDFIEENIDRMQKTARIISDIDCLCSLATVALENNYIKPNINAKDEILIEEG 582 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VEK + + FI+ND + D +L L+TGPNM GKST++RQ ALI IMA Sbjct: 583 RHPVVEKVIPKGE---FISNDSLI----DTKENQLILITGPNMAGKSTYMRQVALITIMA 635 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+GS+VPA A+I I DK+F+R+G++D+LA+G+STFMVEM E ++IL AT++S V+LDE Sbjct: 636 QIGSFVPAKKANISICDKIFTRIGASDDLAAGKSTFMVEMWEVSNILKNATSKSLVLLDE 695 Query: 738 IGRGTATLDGLSIAWATIEYL--HETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 +GRGT+T DGLSIAW+ IEY+ ++ RC+ L ATH+HELT L +++ N ++ VS+ Sbjct: 696 VGRGTSTYDGLSIAWSVIEYICNNKNLRCKTLFATHYHELTKLEDNIEGVKNYSVSVSEL 755 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 I+FL K+I G AD SYGI+V KLAGLP+ VI+RA +IL+ E Sbjct: 756 ENEIVFLRKIIRGGADQSYGIEVAKLAGLPSPVINRAKEILQHIE 800 >gi|332799274|ref|YP_004460773.1| DNA mismatch repair protein mutS [Tepidanaerobacter sp. Re1] gi|332697009|gb|AEE91466.1| DNA mismatch repair protein mutS [Tepidanaerobacter sp. Re1] Length = 869 Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust. Identities = 335/902 (37%), Positives = 522/902 (57%), Gaps = 68/902 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY EIK D +VF+R+GDFYE+FFDDA + S+ L ITLT R +PM G Sbjct: 3 TPMIQQYKEIKDKYRDYIVFFRLGDFYEMFFDDAYICSKELEITLTSRDS--DNKVPMAG 60 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A+ YI KL+ G+++ ICEQ+E P AK +V+R VV++VTPGT+T+ L Sbjct: 61 VPYHAADQYIAKLVAKGYKVVICEQVEDPKLAK-----GIVKREVVKIVTPGTITDLNAL 115 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKI----STSNHDRLISDIMRIDPREIIFSE 201 +NYL V + + E+ +A++D+ TG F I S+ + +I+++ R PRE + + Sbjct: 116 EENKNNYLGCVFKNKHEFGLAFVDLMTGEFDITNLKSSYPYHEIINEVSRFSPRECL-AN 174 Query: 202 KELSHAEY--KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK-- 257 ELS + + L E L + +FD +S + I + FG +++K Sbjct: 175 HELSQEKSLNRKLKENLKLCFTFRDATYFDE---QSAL-----ILLMSQFGE-EKIKKLE 225 Query: 258 ------TAAAAAISYIKKTQMVNKP---TIGYPEREDIQSTLFIDSAARSNLEILRTLSG 308 AA A + Y+ +TQ +N +I + E D + +D NLEI L Sbjct: 226 NRKPALIAAGACLRYLNETQKLNLSHINSISFYENHDF---MVLDFICSKNLEITENLRD 282 Query: 309 SREQ-SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI 367 ++ SLL +D + T G RL + + PL D KI R D+I + L + +++ Sbjct: 283 RKKTGSLLWVMDKTSTAMGARLLRKWLEQPLLDILKIKQRQDAIEELFNDFFLRSDLKEQ 342 Query: 368 LKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKND--LPEELRGAVEKLK 425 LK+ D+ R +L G +D+ I++ I+S I ++ + + L ++ ++ L+ Sbjct: 343 LKNIYDIERLSGKLVCGNANARDLLAIKNTIKSLPQIKHILTRCNSKLLHQIYEQLDPLE 402 Query: 426 KLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE 485 + LEK++ +D P ++ ++DG ++ +D R + K IA L+ K E Sbjct: 403 DICLLLEKSIF----EDPPLTIKEANVIKDGYNSEIDMLRKASREGKAWIADLERKERES 458 Query: 486 TKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 T IK+LKI N GY+IEVT S+ S++ ++ +I +QT++N R+ T EL + E+ Sbjct: 459 TGIKSLKIGFNKVFGYYIEVTKSNLSMVPEN------YIRKQTLANAERYITEELKEYES 512 Query: 546 RITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPI 605 I NA +E F + + +I++ L ++ ++++D+ ++LA ++ NY +P Sbjct: 513 LILNANEKLQELEYNLFCEIRDQLIKEIPRLKQSAYNLSLLDVLLSLAEVSYSNNYIKPE 572 Query: 606 IDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKST 665 ++ S + DGRHP+VE T Q + FI ND + C ++ S ++TGPNM GKST Sbjct: 573 VNLSDEINIIDGRHPVVELT---QKEELFIPNDTQIDCSDNLIS----VITGPNMAGKST 625 Query: 666 FLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILN 725 ++RQ ALIV+MAQ+G ++PA A IGIVD++F+R+G++DNLA G+STFMVEM E A ILN Sbjct: 626 YMRQVALIVLMAQIGCFIPAKKAKIGIVDRIFTRIGASDNLALGQSTFMVEMTEVADILN 685 Query: 726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRF 785 ATN+S +ILDE+GRGT+T DGLSIAWA IEY+ + + + L ATH+HELT L K LK Sbjct: 686 NATNKSLLILDEVGRGTSTFDGLSIAWAVIEYIQKNLKAKTLFATHYHELTAL-KKLKGV 744 Query: 786 HNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH 845 N + V + + +IFL K++PG AD SYGIQV KLAG+PN VI+RA IL E+ Sbjct: 745 KNYKITVKEKGDDVIFLRKIVPGEADKSYGIQVAKLAGVPNAVINRARKILVDLEQNQTQ 804 Query: 846 NQKDMRLYY-------PEIQTKESKNNLS--KNDKLFVEKIKCLNLDEMSPLTALKTLYA 896 Q ++ + + T E + NLS KN+++ +E+IK +N+D ++PL AL L++ Sbjct: 805 TQGELAISHIAACSDKSSQSTNEYQLNLSALKNEEI-IEQIKSVNIDTITPLEALNFLFS 863 Query: 897 VK 898 +K Sbjct: 864 IK 865 >gi|293391481|ref|ZP_06635815.1| DNA mismatch repair protein MutS [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952015|gb|EFE02134.1| DNA mismatch repair protein MutS [Aggregatibacter actinomycetemcomitans D7S-1] Length = 866 Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust. Identities = 319/895 (35%), Positives = 487/895 (54%), Gaps = 50/895 (5%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 LE+NL TPMM+QY+++K+ NPD L+FYRMGDFYELF+DDA AS L I+LTKRG+ Sbjct: 3 LEDNLTQHTPMMKQYLQLKAENPDILLFYRMGDFYELFYDDAKRASALLDISLTKRGQSA 62 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G+ IPM GVP H Y+ KL+++G +AICEQ+ P AK V R +VR+VTPG Sbjct: 63 GQPIPMAGVPYHAVEGYLAKLVQLGESVAICEQVGDPNTAK-----GPVERQIVRIVTPG 117 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPRE 196 T++++ LL N + AV + + + +A +D+++G F++ L +++ RI P E Sbjct: 118 TVSDEALLPERQDNLIAAVYQEKDHFGLATLDMTSGRFQVCEPQSPADLQTELQRIAPVE 177 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 +++ E A+++ + G +P F+ + ++ +N + FG VE Sbjct: 178 LLYCE---DFADFQLIEHAKG--LRRRPIWEFELKTAIQQLCHQFNTKDLRGFG----VE 228 Query: 257 KT-----AAAAAISYIKKTQMVNKPTIG----YPEREDIQSTLFIDSAARSNLEILRTLS 307 K AA + Y ++TQ P I E+IQ +D+A R NLE+ + LS Sbjct: 229 KAILGLCAAGCLLQYARETQRTALPHIQSIYLVQHSENIQ----LDAATRRNLELTQNLS 284 Query: 308 GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI 367 G E +L +D +T G RL I P+ D K+ R +I ++ + + +Q Sbjct: 285 GGTENTLAAVLDKCVTPMGSRLLKRWIHQPICDVAKLMQRQQAIGAILEQDLAAD-LQPY 343 Query: 368 LKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL 427 L+ D+ R L+R+ + P+D+ +R + I NL L ++ ++L Sbjct: 344 LQQVGDMERILARVALRTARPRDLTRLRTALEQIPYIKNL-LAEKTSAKMTALYQQLGDF 402 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 + L + + P RDGG + G A LDE R+L D + R + L+ K E T Sbjct: 403 SVQFD-LLQRAIIESPPVLIRDGGVIAPGYHAELDEWRALADGATRYLEELEQKERESTG 461 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 I LKI N GY+I+++ A ++ ++ RQT+ N R+ EL E+++ Sbjct: 462 IDTLKIGFNAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKTYEDKV 515 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 A ++L +E + ++ + ++ L A +A +D+ LA A+ NY P Sbjct: 516 LKAKGASLALEKQLYDEIFAQLLPHLSRLQLAGLALAELDVLTNLAERAENLNYVAPTFS 575 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 T +++GRHP+VE+ LK+ PFIAN L+ ++TGPNMGGKST++ Sbjct: 576 EQTGIHIRNGRHPVVEQVLKE----PFIANPTKLT-----EQQHFLIITGPNMGGKSTYM 626 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ ALI +MA MGS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QA Sbjct: 627 RQTALITLMAYMGSFVPADSAVIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQA 686 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 T +S V++DEIGRGT+T DGLS+AWA E+L + R L ATH+ ELT L + + N Sbjct: 687 TEKSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKIRSLTLFATHYFELTILPEHVSGIGN 746 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ 847 L + N+ I+F+H V G A SYG+ V LAG+P VI A L EKL + N Sbjct: 747 IHLDAMEHNDTIVFMHAVQQGAASKSYGLAVAALAGVPQQVIKLAKQKLAQLEKLSNQNT 806 Query: 848 ----KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +D+RL + +N + + ++ L+ DE+SP AL LY +K Sbjct: 807 NQQIQDLRLLNQRQGELAFERAEDENKDMLLHMLQELDPDELSPKQALAYLYQLK 861 >gi|21227785|ref|NP_633707.1| DNA mismatch repair protein MutS [Methanosarcina mazei Go1] gi|44888226|sp|Q8PWA7|MUTS_METMA RecName: Full=DNA mismatch repair protein mutS gi|20906191|gb|AAM31379.1| DNA mismatch repair protein [Methanosarcina mazei Go1] Length = 900 Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust. Identities = 326/917 (35%), Positives = 513/917 (55%), Gaps = 70/917 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK-HLGKDIPMC 84 TP MRQY E K PD+L+F+RMGDFYE F +DA ++ L ITLT RGK G+ +P+ Sbjct: 6 TPAMRQYYEAKQAYPDTLIFFRMGDFYESFGEDAKTIAKELEITLTARGKDRSGERMPLA 65 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G+P H + Y+ +LI G+++AICEQ+E P +AK +V+R VVR+VTPGT + + Sbjct: 66 GIPYHAIDTYLPRLINKGYKVAICEQLEDPKQAK-----GVVKRGVVRVVTPGTAIDSSM 120 Query: 145 LSPTDSNYLMAVA-----------RIRTEWAIAWIDISTGIFKIS----TSNHDRLISDI 189 +NYLMAVA E+ ++++DISTG F + + + D+L+S++ Sbjct: 121 FPDASNNYLMAVAGKEVGKTGKSGEKEMEFGLSFLDISTGEFLTTQFTDSGSFDKLLSEL 180 Query: 190 MRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISES--RIADYYNITTVD 247 R+ P E I ++ L + L + Q I E+ ++ ++ ++T++ Sbjct: 181 ARMKPAECILPPTLYGNS---VLVDRLREQTIVQEFAPEISGIEEAGEKLKIHFRVSTLE 237 Query: 248 TFGSFS-QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL 306 G + +A +A+ Y K TQM + I + +DS NLEI++ + Sbjct: 238 GMGCEKLEFGVYSAWSALEYAKTTQMRDLAHINTLRTYSNTEFMVLDSVTLRNLEIVKNV 297 Query: 307 SGSREQ-SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQ 365 + SL +T+ ++ T G R+ + + PL +IN RLD++ NP+L I+ Sbjct: 298 RDEGDHNSLYRTLSFTKTPMGSRILKKWLLKPLLSVEQINHRLDAVEELAGNPLLRYDIR 357 Query: 366 KILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLK 425 L D+ R + R+ G +D+ ++ + + +I + L+ E L+G E L Sbjct: 358 DWLSEVRDIERLVGRIVYGNANARDLVALKKSLDAVPSIRDCLLEKAGAEMLKGIAEGLA 417 Query: 426 KLPQ--SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 + L K + + + ++ P R+GG ++ G LDE R + SK+ IA+ Q K Sbjct: 418 SFSEIEELAKMIGNAIVEEPPVSVREGGMIKSGFSEELDELRDISSNSKQWIAAFQQKEK 477 Query: 484 EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDL 543 + T IK+LKI +N GY+IEVT++++S + D +I +QTM+N RF T EL + Sbjct: 478 DRTGIKSLKIGYNKVFGYYIEVTNANSSQVPDD------YIRKQTMANAERFFTPELKEK 531 Query: 544 ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCR 603 E+ I A + A+ +E E F ++ + S+ L ++ I ++D+ LA +A+ NY R Sbjct: 532 ESLILTANDKAVALEYEIFTEITETLSAHSKELQETAERIGVLDVLADLAEVAENNNYTR 591 Query: 604 PIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 P + +++DGRHP+VE T+ S F+ ND ++ C ++ L+TGPNM GK Sbjct: 592 PQLTEDCKILIRDGRHPVVESTV----SGGFVPNDTEMDCKENQ----FLLVTGPNMAGK 643 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 ST++RQ ALI IMAQ GS+VPASYA IG++D++F+R+G+ D+LASG+STFMVEM+E A+I Sbjct: 644 STYMRQTALIAIMAQAGSFVPASYASIGVIDQVFTRIGAFDDLASGQSTFMVEMVELANI 703 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC--RGLLATHFHELTDLSKS 781 LN A+ +S V+LDEIGRGT+T DG SIA A +E+LH + R L ATH+H+LT L + Sbjct: 704 LNNASPKSLVLLDEIGRGTSTYDGYSIAKAVVEFLHNRGKVGIRALFATHYHQLTSLEEK 763 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 LKR N + V + ++FL K++PG D SYGI V +LAG+P VI RA +IL+ E+ Sbjct: 764 LKRVKNYHIAVKEEGHELVFLRKIVPGATDRSYGIHVARLAGVPEKVIERANEILRELER 823 Query: 842 LYHHNQKD------------------MRLYYPEIQT--KESKNNLSKNDKLFVEKIKCLN 881 + + M L+ P ++ E K LS + +K +N Sbjct: 824 ESVLEESEDCENGKKRKGKATTRYTQMLLFDPGSRSGNSEVKRGLSPVEA----ALKKMN 879 Query: 882 LDEMSPLTALKTLYAVK 898 +DEM+P+ A+ L+ +K Sbjct: 880 VDEMTPIEAMNKLHELK 896 >gi|209694223|ref|YP_002262151.1| DNA mismatch repair protein MutS [Aliivibrio salmonicida LFI1238] gi|238058941|sp|B6ENH6|MUTS_ALISL RecName: Full=DNA mismatch repair protein mutS gi|208008174|emb|CAQ78317.1| DNA mismatch repair protein MutS [Aliivibrio salmonicida LFI1238] Length = 855 Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust. Identities = 319/879 (36%), Positives = 489/879 (55%), Gaps = 40/879 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ +KS NPD L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IPM G Sbjct: 10 TPMMQQYLRLKSENPDILLFYRMGDFYELFYDDAKRASQLLEISLTKRGSSAGEPIPMAG 69 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H Y+ KL++ G +AICEQI P +K V R VVR+VTPGT+T++ LL Sbjct: 70 LPYHAVEGYLAKLVQQGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTVTDEALL 124 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKEL 204 N + A+ + ++ A +DI++G FK+S S + +++++ R P E++FSE Sbjct: 125 PERFDNLIAAIYHHKGQFGYATLDITSGRFKVSEPSTEESMLAELQRTSPTELLFSED-- 182 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAA 263 E L E N +P F+ ++ ++ + + FG ++ AA Sbjct: 183 --FEPVHLLEKR-NGNRRRPVWEFELDTAKQQLNQQFGTRDLVGFGVENAEFGLCAAGCL 239 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 I Y+K TQ P I + ++ +D+A R NLEI + L+G +L + +D++ T Sbjct: 240 IQYVKDTQRTTLPHIRSIVMDRQDDSVILDAATRRNLEITQNLAGGFNHTLSEVLDHTST 299 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL + P+ +N RLD+I N L + LK DV R L+RL + Sbjct: 300 AMGSRLLKRWLHQPIRTHDVLNQRLDAIGELKSNG-LYAELSPQLKQIGDVERILARLAL 358 Query: 384 GRGEPKDIAVIRDGIRSGINILN---LFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 P+D+A +R+ ++ + F + L E + L + S+ + L + Sbjct: 359 RSARPRDLARLRNALQQLPELAQSTQAFEQTHLLE-----LASLAQPIDSICELLERAVK 413 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 ++ P RDGG L DG + LD+ R L + + ++ L+ + E I LK+ +NN G Sbjct: 414 ENPPVVIRDGGVLADGYNEELDQWRDLANGAALFLSKLEQEERERHDIDTLKVGYNNVHG 473 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 ++I+++ + ++ ++ RQT+ N R+ EL E+++ ++ + AL IE + Sbjct: 474 FYIQISKGQSH------KAPAHYVRRQTLKNAERYIIPELKAHEDKVLSSKSKALAIEKK 527 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 +E L + ++ E L + I+ +D+ LA A NYCRP + + ++ GRHP Sbjct: 528 LWEELFDQLLPHLEQLQLMANAISELDVLSNLAERADTLNYCRPTLSSDIGMKIEGGRHP 587 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE+ + S PFIAN +L ND K+ ++TGPNMGGKST++RQ ALI +MA +G Sbjct: 588 VVEQVM----SDPFIANPINL---NDDR--KMLIITGPNMGGKSTYMRQTALIALMAHVG 638 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 YVPA AHIG++D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V++DEIGR Sbjct: 639 CYVPADSAHIGLLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATQHSLVLMDEIGR 698 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GT+T DGLS+AWA+ E+L L ATH+ ELT+L N L + + I Sbjct: 699 GTSTYDGLSLAWASAEWLATKINAMTLFATHYFELTELPNLFSGLANVHLDAVEHGDEIA 758 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 F+H V G A+ SYG+ V LAG+P VI +A L+ E NQ L +I+ + Sbjct: 759 FMHAVQEGAANKSYGLAVASLAGVPKAVIKKAKQKLQQLENGQPKNQS---LTSTQIK-Q 814 Query: 861 ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 E + +L E + +N D++SP AL+ LY +KA Sbjct: 815 EHQLSLIPEPSEVEEALAKVNPDDLSPRQALEALYRLKA 853 >gi|227356591|ref|ZP_03840978.1| DNA mismatch repair protein [Proteus mirabilis ATCC 29906] gi|227163347|gb|EEI48274.1| DNA mismatch repair protein [Proteus mirabilis ATCC 29906] Length = 854 Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust. Identities = 314/894 (35%), Positives = 496/894 (55%), Gaps = 63/894 (7%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +N +S TPMM+QY+++K+ +P+ L+FYRMGDFYELFFDDA ASR L I+LTKRG+ G+ Sbjct: 5 QNFESHTPMMQQYLKLKAEHPEILLFYRMGDFYELFFDDAKKASRLLDISLTKRGQSAGQ 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H +Y+ KL+++G +AICEQI P +K V R V+R+VTPGT+ Sbjct: 65 PIPMAGVPHHAVENYLAKLVQLGESVAICEQIGDPATSK-----GPVERKVIRIVTPGTV 119 Query: 140 TEDQLLSPTDSNYLMAVARIRT-EWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 T++ LL N L A+ + + + A +DI++G F+++ + + + +++ R P E+ Sbjct: 120 TDEALLEERQDNLLAAIWQDKNGAFGYATLDITSGRFRVTEMPDSESMAAELQRTHPAEL 179 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQ-----PNVFFDHSISESRIADYYNITTVDTFG-S 251 ++ E FE++ + Q P F+ ++ ++ + + FG Sbjct: 180 LYPET----------FESMALIERQQGLRRRPIWEFECETAKQQLNLQFGTRDLTGFGVE 229 Query: 252 FSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 +++ AA + Y+K TQ P I E Q T+ +D+A R NLE+ + L+G + Sbjct: 230 NARLALCAAGCLLQYVKDTQRTALPHIRSITMERPQDTIILDAATRRNLELTQNLAGGCD 289 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 +L +D +T G R+ I +PL ++ R D+I+ P+ +Q L+ Sbjct: 290 NTLASVLDLCVTPMGSRMLKRWIHTPLRQREQLIKRQDAISAL--QPLYFE-LQPFLRQV 346 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQ 429 D+ R L+RL + P+D++ +R + +I + + D+P +EL+ + + +L + Sbjct: 347 GDLERVLARLALRSARPRDLSRMRHAFQQYQDIHQVLDQADMPYIKELQQRISQFDELRE 406 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 LE + + P RDGG + G +A LDE R+L D + + L+++ E+ I Sbjct: 407 LLENAIV----ETPPVLVRDGGVIAPGYNAELDEWRALADGASDYLEKLEVREREKWGID 462 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LK+ N GY+I+V+ ++++ ++ RQT+ N R+ EL + E+++ Sbjct: 463 TLKVGFNGVHGYYIQVSRGQSNLVPM------HYVRRQTLKNAERYIIPELKEYEDKVLT 516 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 + AL IE +E L ++ +L +++ +A D+ LA A+ NY RP + Sbjct: 517 SKGKALAIEKMLYEELFEKLLPHLTALQTSAEALAETDVLANLAERAESLNYTRPELTEK 576 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 T + DGRHP+VE+ L S+PFI+N L+ +L ++TGPNMGGKST++RQ Sbjct: 577 TGIQITDGRHPVVEQVL----SEPFISNPLQLAPQR-----RLLIITGPNMGGKSTYMRQ 627 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI ++A +GS+VPA A IG +D++F+RVG++D+LASGRSTFMVEM ETA+IL+ AT Sbjct: 628 AALITLLAYIGSFVPAEKAVIGPIDRIFTRVGASDDLASGRSTFMVEMTETANILHNATE 687 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + L+ N Sbjct: 688 NSLVLMDEIGRGTSTYDGLSLAWACAENLANRIKAMTLFATHYFELTTLPEKLEGTANIH 747 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN--- 846 L + E I F+H V G A SYG+ V LAG+P VI RA LK E L H+ Sbjct: 748 LDAVEHGETIAFMHSVQEGAASKSYGLAVAALAGVPKEVIRRAKQKLKELETLSGHSGAS 807 Query: 847 --QKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + +I+ E + L+K D D ++P AL+ LY +K Sbjct: 808 HVETSQLMLLADIEPSEVELALNKIDP-----------DSLTPKQALELLYHLK 850 >gi|317485559|ref|ZP_07944436.1| DNA mismatch repair protein MutS [Bilophila wadsworthia 3_1_6] gi|316923239|gb|EFV44448.1| DNA mismatch repair protein MutS [Bilophila wadsworthia 3_1_6] Length = 903 Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust. Identities = 320/897 (35%), Positives = 478/897 (53%), Gaps = 53/897 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM QY+ IK PD+L+FYRMGDFYELFF+DA +ASR L I LT R + IPMCG Sbjct: 28 TPMFEQYLRIKEGYPDALLFYRMGDFYELFFEDAEVASRELQIALTSRNPNAEAPIPMCG 87 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ +L+ G++IA C+Q+E P R K LV R V R+ TPGT ED L Sbjct: 88 VPWHAAEGYVSQLLNKGYKIAFCDQVEDP-----RAAKGLVERAVTRVYTPGTAVEDVSL 142 Query: 146 SPTDSNYLMAVARIRTEWA-------IAWIDISTGIFK-ISTSNHDRLISDIMRIDPREI 197 P YL A+ W+ AW+D+STG + + L +I PRE+ Sbjct: 143 EPKGHTYLGALF-----WSADTDRGGFAWVDVSTGYWAGLHVKKSQELWQWAQKIAPREL 197 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQP-NVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 + E A+ + AV P FD+ S R+ ++ + G + E Sbjct: 198 LLPED----ADVPASLHLTDIQAVRVPLRSHFDYKRSAERVLAAQSVAELGALGLEGRKE 253 Query: 257 KTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 A A+ +Y+++TQM + + E D+ L ID NLE+ R L G + L Sbjct: 254 LVQACGALLAYLEQTQMQDTKHLAPFEPLDLGQHLLIDDVTERNLELFRRLDGRKGVGTL 313 Query: 316 K-TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 + ID + T GGRL ER+ +P + I D+I + I +P +++ L D+ Sbjct: 314 RHVIDSTQTPMGGRLLEERLRNPWRELAPIQETQDAIAWLIAHPENRKKLRETLSGVYDL 373 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDL--PEELRGAVEKLKKLPQSLE 432 R +R+ + R P+D+ +R + + + + +D P LR E L Sbjct: 374 ERLSTRIALNRTSPRDMLSLRQSLAALPPVKSAITSSDADTPRVLRSITEHWDDLGDH-A 432 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 TL L+DD P F +GG + G +A LDE L + + + +L + + + I LK Sbjct: 433 ATLQKALADDPPQFITEGGLFKQGYNAELDELLDLVEHGENRVKALLDEEQKASGISKLK 492 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 + +N GY+ E++ + + FI RQT++N RFTT+ L +LE ++ +A + Sbjct: 493 LGYNRVFGYYFELSKAVGGT------PPEHFIRRQTLANAERFTTVRLKELEEKLLSAAD 546 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 +E + F+ L A+ E + + ++A +D +LA A N+ RP++ + Sbjct: 547 RRKSLEYKLFQQLRGALAEARPRILFMADMLAQLDYWQSLAETAVRHNWSRPVLHTGQSI 606 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 +++GRHP+VE + + + F+ ND + D+ +L L+TGPNM GKST LRQ AL Sbjct: 607 TIREGRHPVVEGIIGEAA---FVPNDLHMD--EDR---RLLLITGPNMAGKSTVLRQTAL 658 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 I ++AQMGS+VPA A +G+ D++FSRVG++DNLA G+STFMVEM+ETA IL QAT +S Sbjct: 659 ICLLAQMGSFVPAREAQLGLCDRIFSRVGASDNLAQGQSTFMVEMMETARILRQATKRSL 718 Query: 733 VILDEIGRGTATLDGLSIAWATIEYL--HETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 VILDEIGRGT+T DGL++AWA E L R L ATH+HELT L + H + Sbjct: 719 VILDEIGRGTSTFDGLALAWAVAEELARRAGGSIRTLFATHYHELTALEGKIPGVHTMNI 778 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--KLYHHNQK 848 + + N I+FL ++IPG +D SYGI+V +LAG+P V+ RA +IL E K ++ Sbjct: 779 AIREWNGEIVFLRRLIPGPSDRSYGIEVARLAGVPQPVVQRAREILAQLEQNKGSSPVRQ 838 Query: 849 DMRLYYPEIQTKESKNN-------LSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 M P IQ E+K +++ + + ++ N D ++PL ALK + K Sbjct: 839 VMPNLLPGIQLPEAKPKKAVEEVAVAEPEHPLLVALRDTNPDALTPLEALKRITEWK 895 >gi|168180373|ref|ZP_02615037.1| DNA mismatch repair protein MutS [Clostridium botulinum NCTC 2916] gi|226949041|ref|YP_002804132.1| DNA mismatch repair protein MutS [Clostridium botulinum A2 str. Kyoto] gi|254766622|sp|C1FNT9|MUTS_CLOBJ RecName: Full=DNA mismatch repair protein mutS gi|182668882|gb|EDT80860.1| DNA mismatch repair protein MutS [Clostridium botulinum NCTC 2916] gi|226844101|gb|ACO86767.1| DNA mismatch repair protein MutS [Clostridium botulinum A2 str. Kyoto] Length = 932 Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust. Identities = 305/825 (36%), Positives = 488/825 (59%), Gaps = 38/825 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY+E+K D ++F+R+GDFYE+FF+DA +AS+ L + LT R L + PMCG Sbjct: 4 TPMMRQYLEVKESCKDCILFFRLGDFYEMFFEDAKVASKELELVLTGRDCGLEERAPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H AN YI +L+ G++IAICEQ+E P +K +V+R +++++TPGT T+ L Sbjct: 64 IPYHAANTYIGRLVSAGYKIAICEQLEDP-----SASKGIVKRGIIKIITPGTYTDSSFL 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREIIFSEKE 203 +NY+M+ A+++ DISTG F + SN ++ +I + PREI+ E+ Sbjct: 119 EENKNNYIMSFYLDDNMCAMSFADISTGEFNSTHSNFKEAVVLDEISKFAPREIVL-EEN 177 Query: 204 LSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 + + ++ E N+++++ FD++I + + N + + K +A Sbjct: 178 IKESFIHTIKERFPNISISKIKEENFDYNIDNNLKEQFNNFNE----NEYETIVKKSANG 233 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYS 321 + YI TQ I + I L ID +R NLEI L +++ SLL +D + Sbjct: 234 LLYYIFHTQKNILSNINKIDYYSIVDYLTIDVNSRRNLEITENLREKTKKGSLLWVLDKT 293 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T GGR I PL + I RL+++ + N L +++ LKS D+ R + ++ Sbjct: 294 NTAMGGRQLRRWIEQPLINKNPIENRLNAVEELLNNISLQEDLKEDLKSIYDIERIVGKV 353 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFL---KNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 K++ ++ I + + +L K+DL + ++ L+ + + L+K L Sbjct: 354 ASKSVNAKELISLKCSI-GKVPYIKKYLSGFKSDLFLNMEQCIDTLEDIHKLLDKALL-- 410 Query: 439 LSDDLPTFK-RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 D P+ ++G +++G + +D R + K+ IASL+ K EET IK+LK+ +N Sbjct: 411 ---DNPSLSVKEGNIIKEGFNEEVDSLREAKSNGKKWIASLEQKEKEETGIKSLKVSYNK 467 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GYFIE+T ++ +++ + R+I +QT+SN R+ T EL ++E +I A + I Sbjct: 468 VFGYFIEITKANLNLV-----PEGRYIRKQTLSNAERYITPELKEMEEKILGAEEKLIDI 522 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + F + + I E + + +++I+ ID +LA +A E NY +P I+ ++++G Sbjct: 523 EYKLFTEIRDFIEENIDRMQKTARIISDIDCLCSLATVALENNYIKPNINAKDEILIEEG 582 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VEK + + FI+ND + D +L L+TGPNM GKST++RQ ALI IMA Sbjct: 583 RHPVVEKVIPKGE---FISNDSLI----DTKENQLILITGPNMAGKSTYMRQVALITIMA 635 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+GS+VPA A+I I DK+F+R+G++D+LA+G+STFMVEM E ++IL AT++S V+LDE Sbjct: 636 QIGSFVPAKKANISICDKIFTRIGASDDLAAGKSTFMVEMWEVSNILKNATSKSLVLLDE 695 Query: 738 IGRGTATLDGLSIAWATIEYL--HETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 +GRGT+T DGLSIAW+ IEY+ ++ RC+ L ATH+HELT L +++ N ++ VS+ Sbjct: 696 VGRGTSTYDGLSIAWSVIEYICNNKNLRCKTLFATHYHELTKLEDNIEGVKNYSVSVSEL 755 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 I+FL K+I G AD SYGI+V KLAGLP+ VI+RA +IL+ E Sbjct: 756 ENEIVFLRKIIRGGADQSYGIEVAKLAGLPSPVINRAKEILQHIE 800 >gi|323496140|ref|ZP_08101200.1| DNA mismatch repair protein MutS [Vibrio sinaloensis DSM 21326] gi|323318884|gb|EGA71835.1| DNA mismatch repair protein MutS [Vibrio sinaloensis DSM 21326] Length = 854 Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust. Identities = 310/893 (34%), Positives = 492/893 (55%), Gaps = 63/893 (7%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 + TPMM+QY+++K+ NPD L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IP Sbjct: 5 QKHTPMMQQYLKLKAENPDILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIP 64 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+T++ Sbjct: 65 MAGVPFHAVEGYLAKLVQLGESVAICEQIGDPATSK-----GPVERAVVRIVTPGTVTDE 119 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSE 201 LLS N + A+ ++ A +D+++G F++ + + +++ R PRE++F E Sbjct: 120 ALLSERIDNLIAAIYHHDGKFGYATLDVTSGRFQLMEPETEEAMAAELQRTAPRELLFPE 179 Query: 202 KELSHAEYKSLFETLG-----NVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 FE + N +P F+ ++ ++ + + FG +++ Sbjct: 180 D----------FEPVHLMSSRNGNRRRPVWEFEIDTAKQQLNQQFGTRDLVGFGVEHAKL 229 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA I Y+K TQ P I + ++ +D+A R NLEI + L+G + +L Sbjct: 230 GLCAAGCLIQYVKDTQRTALPHIRSLTYDRQDHSVILDAATRRNLEITQNLAGGTDNTLA 289 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 + +D+S T G R+ + P+ D +N RLD+I+ ++ L + +LK D+ Sbjct: 290 QVLDHSATAMGSRMLKRWLHQPMRDIDTLNHRLDAISE-LKEAALFADLHPVLKQIGDIE 348 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAV-----EKLKKLP 428 R L+RL + P+D+A +R + LPE EL G++ +L K Sbjct: 349 RILARLALRSARPRDMARLR------------YAMQQLPELSELMGSLNHSYLSQLAKYA 396 Query: 429 QSLEKT---LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE 485 +++ L + ++ P RDGG + +G +A LDE R L D + + L+ E Sbjct: 397 APMDEVCELLEQAIKENPPVVIRDGGVIAEGYNAELDEWRKLADGATEYLEKLEQDERER 456 Query: 486 TKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 I +LK+ +NN G+FI+V+ + ++ ++ RQT+ N R+ EL + E+ Sbjct: 457 HGIDSLKVGYNNVHGFFIQVSRGQSHLVPP------HYVRRQTLKNAERYIIPELKEHED 510 Query: 546 RITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPI 605 ++ N+ + AL +E + +E L + ++ E + N + ++ ID+ LA A +YCRP Sbjct: 511 KVLNSKSKALALEKQLWEELFDLLLPHLEQMQNLASAVSQIDVLQNLAERADSLDYCRPT 570 Query: 606 IDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKST 665 + ++ GRHP+VE+ + + PFIAN +L+ + K+ ++TGPNMGGKST Sbjct: 571 LTKEAGIHIQSGRHPVVEQVMDE----PFIANPIELNP-----ARKMLIITGPNMGGKST 621 Query: 666 FLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILN 725 ++RQ ALI +MA +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ Sbjct: 622 YMRQTALIALMAHIGSYVPAEAAQIGSIDRIFTRIGASDDLASGRSTFMVEMTETANILH 681 Query: 726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRF 785 AT+ S V++DEIGRGT+T DGLS+AWA+ E+L + L ATH+ ELT+L + Sbjct: 682 NATSNSLVLMDEIGRGTSTYDGLSLAWASAEWLAKELGSMTLFATHYFELTELPNQIPHL 741 Query: 786 HNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH 845 N L + + I F+H V G A SYG+ V LAG+P +VI A L E + + Sbjct: 742 ANVHLDAVEHGDSIAFMHAVQEGAASKSYGLAVAGLAGVPKSVIKNARAKLTQLELIGQN 801 Query: 846 NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +I + S L E + ++ D+++P AL+ LY +K Sbjct: 802 ESSSASGPAVDIANQLS---LIPEPSEVEEALANIDPDDLTPRQALEELYRLK 851 >gi|294496664|ref|YP_003543157.1| DNA mismatch repair protein MutS [Methanohalophilus mahii DSM 5219] gi|292667663|gb|ADE37512.1| DNA mismatch repair protein MutS [Methanohalophilus mahii DSM 5219] Length = 881 Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust. Identities = 310/893 (34%), Positives = 510/893 (57%), Gaps = 42/893 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD---IP 82 TP M+QY K +PDSL+F+RMGDFYE F +DA ++ L ITLT RGK GKD +P Sbjct: 5 TPAMQQYYAAKEQHPDSLIFFRMGDFYESFGEDAKTIAQELDITLTTRGK--GKDGEKMP 62 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 + G+P H ++Y+ +L++ G+++A+CEQ+E P AK + VVR+VTPGT+ + Sbjct: 63 LAGIPYHAVDNYLPRLVRKGYKVAVCEQLEDPKNAKGVVKRG-----VVRVVTPGTVIDS 117 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSN----HDRLISDIMRIDPREII 198 +LS +NYLMA+A ++ +A++D+STG F + N D + ++ R+ P E I Sbjct: 118 SMLSDPSNNYLMAIAGRDKDFGVAFLDVSTGEFLTTQINDQPPFDGIAGEVARMRPAECI 177 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEK 257 + + + E +S L D + ++ + ++ ++T++ G K Sbjct: 178 VLPQLMENEELQSRLAELKLSTTEFDAASTDPAYADRHLCEHLGVSTLEGMGCAGLPFAK 237 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLK 316 AA+ A+ Y +TQM + + + +DS NLE+++ + G R+ ++L+ Sbjct: 238 MAASCALEYALETQMRELNHVQFLHTYSSSEFMILDSITLRNLEVVKNVRGEGRDTTILQ 297 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D + T G RL + I PL + + IN RLD++ N +L ++ L DV R Sbjct: 298 VLDETKTPMGSRLLQKWILKPLLNVSHINKRLDAVEELSDNTLLRFDVRSHLSYVKDVER 357 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ--SLEKT 434 + R+ G +D+ ++ +++ ++L L+ + L V+ +K + +L Sbjct: 358 LVGRVVYGNSNARDLVALKKSLQAIPSLLET-LEGEHKAMLARIVQGMKDFREIDTLTDL 416 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + + ++ P R+GG ++ G LDE + + +K IAS Q K + T IK+LK+ Sbjct: 417 IERAIVEEPPLSVREGGLIKPGYSEELDELKEISSNAKSWIASFQQKERDRTGIKSLKVG 476 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N +GY++EVT + S + D +I +QTM+N RF T +L D E +I +A Sbjct: 477 YNKVIGYYLEVTKPNIS------QVPDDYIRKQTMTNAERFYTPQLKDWEGKILSADEKR 530 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E E F + + + S+ L + ++ +D+ +LA +A NY RP I + ++ Sbjct: 531 VALEYELFNEVISVVANHSKQLQEMAVLLGELDVLASLAEVAVNNNYVRPSITDDCRILI 590 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 + GRHP+VE ++ FI ND ++ C +++ L+TGPNM GKST++RQ ALIV Sbjct: 591 RQGRHPVVENSV----DGGFIPNDVEMDCSDEQ----FLLITGPNMAGKSTYMRQVALIV 642 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMAQ GS+VPAS+A +GIVD++F+RVG+ D+LASG+STFMVEM+E A+ILN +T +S V+ Sbjct: 643 IMAQAGSFVPASHASVGIVDRIFTRVGAFDDLASGQSTFMVEMVELANILNNSTAKSLVL 702 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQV 792 LDEIGRGT+T DG SIA A +EY+H R R L ATH+H+LT++++SLKR N + V Sbjct: 703 LDEIGRGTSTYDGYSIAKAVVEYIHNKGRQGVRSLFATHYHQLTEIAESLKRVKNYHIAV 762 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE-------KLYHH 845 + + ++FL K++PG D SYGI V +LAG+P+ V RA IL+ E + Sbjct: 763 KEDGDDLVFLRKIVPGATDKSYGIHVARLAGVPHKVTKRAQSILEDIESESVISRESEGS 822 Query: 846 NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ Y ++ + + K+ E+I+ L+L+ ++P+ AL L+A++ Sbjct: 823 RKRRSGAKYTQLLLVDPEKGDEKDFDPVAEEIRDLDLNNLTPMEALNRLHAIQ 875 >gi|157961022|ref|YP_001501056.1| DNA mismatch repair protein MutS [Shewanella pealeana ATCC 700345] gi|189083192|sp|A8H1T4|MUTS_SHEPA RecName: Full=DNA mismatch repair protein mutS gi|157846022|gb|ABV86521.1| DNA mismatch repair protein MutS [Shewanella pealeana ATCC 700345] Length = 859 Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust. Identities = 316/886 (35%), Positives = 490/886 (55%), Gaps = 36/886 (4%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 ++L+ TPMMRQY+ +K+ +PD L+FYRMGDFYELF++DA AS LGI+LT RGK G Sbjct: 7 QSLEKHTPMMRQYLTLKAQHPDMLLFYRMGDFYELFYEDAKKASELLGISLTARGKSGGD 66 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H Y+ KL+++ +AICEQ+ P +K V R VVR+VTPGTL Sbjct: 67 PIPMAGLPYHAVEGYLAKLVQLRVSVAICEQVGDPATSK-----GPVERKVVRIVTPGTL 121 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREII 198 T++ LL N L A+ + +T + A +D+++G F ++ +N + L +++ R +P E++ Sbjct: 122 TDEALLQERQDNLLAALYQGKTGYGYATLDVASGRFVVTELANTEALEAELQRTNPAELL 181 Query: 199 FSEKELSHAEYKSLFETLG-NVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVE 256 +SE ++ + G N +P FD+ + + + + + FG +++ Sbjct: 182 YSE------DFSQMSLIAGMNGTRRRPEWEFDYDTCQRMLLNQFGTKDLKGFGIEDARLS 235 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 AA + Y+K TQ P I R + ++ +D+A R NLE+ L G RE +L Sbjct: 236 LQAAGCLMQYVKDTQRTALPHINSIVRFNQSDSIVLDAATRRNLELTVNLQGGRENTLAS 295 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D ++T G R+ I PL D I R SI + + + LK+ DV R Sbjct: 296 VLDNTVTPMGSRMLQRWIHQPLRDHDIIRARQASIAELMMTGDF-ETLSEDLKALGDVER 354 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 +R+ + P+D A +R + + + L L L+ + + P+ ++ LS Sbjct: 355 ITARIALRNARPRDFARLRQAL-TLLPQLQQTLSAASAPHLKYLSQVIGVFPEEVD-LLS 412 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + D+ P RDGG +R+G + LD+ R L + + + L+ + E+T I LK+ +N Sbjct: 413 RAVVDNPPMLIRDGGVIREGYNEELDQWRKLSEGATDYLHELEAREKEQTGISTLKVGYN 472 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+IEV+ + ++ + RQT+ N R+ EL + E ++ ++ AL Sbjct: 473 RVHGYYIEVSRRESDLVPLS------YQRRQTLKNTERYIIPELKEHEEKVLSSQGRALA 526 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E + +E L + I+ + L + +Q A +D+ A A+ NY P + + + ++ Sbjct: 527 LEKQLWEQLFDLILPKLHELQDFAQASAELDVLCNFAERAESLNYHCPELSSISGIHIEA 586 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE Q S PFIAN L+ K+ ++TGPNMGGKST++RQ ALI +M Sbjct: 587 GRHPVVE----QVSQSPFIANPVTLNAQR-----KMLIVTGPNMGGKSTYMRQVALITLM 637 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A +G YVPA A IG VD++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V++D Sbjct: 638 AHIGCYVPAEQAVIGPVDRIFTRIGASDDLASGRSTFMVEMTETANILHNATPNSLVLMD 697 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DGLS+AW+ EYL + + L ATH+ ELT L + L N L + Sbjct: 698 EIGRGTSTYDGLSLAWSAAEYLAKQLQAMTLFATHYFELTQLPEQLSNVENVHLDAVEHG 757 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 + I+F+H V G A SYG+QV LAG+PN VIS A L E H Q++ + Sbjct: 758 DSIVFMHAVQEGAASRSYGLQVAALAGVPNCVISAAKHKLHQLESRDHDVQQNTE----Q 813 Query: 857 IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTL 902 T+++ + + VE ++ LN DE++P AL LY +K L Sbjct: 814 QGTQQNMSFVPSAPSPAVEALQKLNPDELTPRQALDYLYNLKKLAL 859 >gi|168184856|ref|ZP_02619520.1| DNA mismatch repair protein MutS [Clostridium botulinum Bf] gi|237795209|ref|YP_002862761.1| DNA mismatch repair protein MutS [Clostridium botulinum Ba4 str. 657] gi|259511163|sp|C3KX35|MUTS_CLOB6 RecName: Full=DNA mismatch repair protein mutS gi|182672081|gb|EDT84042.1| DNA mismatch repair protein MutS [Clostridium botulinum Bf] gi|229263070|gb|ACQ54103.1| DNA mismatch repair protein MutS [Clostridium botulinum Ba4 str. 657] Length = 932 Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust. Identities = 309/831 (37%), Positives = 492/831 (59%), Gaps = 50/831 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+E+K D ++F+R+GDFYE+FF+DA +AS+ L + LT R L + PMCG Sbjct: 4 TPMMKQYLEVKESCKDCILFFRLGDFYEMFFEDAKVASKELELVLTGRDCGLEERAPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H AN YI +L+ G++IAICEQ+E P +K +V+R +++++TPGT T+ L Sbjct: 64 IPYHAANTYIGRLVSAGYKIAICEQLEDP-----SASKGIVKRGIIKIITPGTYTDSSFL 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREIIFSEKE 203 +NY+M++ A+++ DISTG F + SN ++ +I + PREI+ E+ Sbjct: 119 EENKNNYIMSLYLDDNMCAMSFADISTGEFNSTHSNFKEAVVLDEISKFAPREIVL-EEN 177 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITT--VDTFGSFSQVE----- 256 + + ++ E N+++++ I E A YNI + F +F++ E Sbjct: 178 IKESFIHTIKERFPNISISK--------IKEENFA--YNIDNNLKEQFNNFNENEYETIV 227 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLL 315 K +A + YI TQ I + I L ID +R NLEI L +++ SLL Sbjct: 228 KKSANGLLYYIFHTQKNILSNINKIDYYSIVDYLTIDVNSRRNLEITENLREKTKKGSLL 287 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T GGR I PL + I RL+++ + N L +++ LKS D+ Sbjct: 288 WVLDKTNTAMGGRQLRRWIEQPLINKNPIENRLNAVEELLNNISLQEDLKEDLKSIYDIE 347 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFL---KNDLPEELRGAVEKLKKLPQSLE 432 R + ++ K++ ++ I + + +L K+DL + ++ L+ + + L+ Sbjct: 348 RIVGKVASKSVNAKELISLKCSI-GKVPYIKKYLSSFKSDLFLNMEKCIDTLEDIHKLLD 406 Query: 433 KTLSSMLSDDLPTFK-RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 K L D P+ ++G +++G + +D R + K+ IASL+ K EET IK+L Sbjct: 407 KALL-----DNPSLSVKEGNIIKEGFNEEVDSLREAKSNGKKWIASLEQKEKEETGIKSL 461 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 K+ +N GYFIE+T ++ +++ + R+I +QT+SN R+ T EL ++E +I A Sbjct: 462 KVSYNKVFGYFIEITKANLNLV-----PEGRYIRKQTLSNAERYITPELKEMEEKILGAE 516 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + IE + F + + I E + + +++I+ ID +LA +A E NY +P I+ Sbjct: 517 EKLIDIEYKLFTKIRDFIEENIDRMQKTARIISDIDCLCSLATVALENNYIKPNINAKDE 576 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 ++++GRHP+VEK + + FI+ND + D +L L+TGPNM GKST++RQ A Sbjct: 577 ILIEEGRHPVVEKVIPKGE---FISNDSLI----DTKENQLILITGPNMAGKSTYMRQVA 629 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LI IMAQ+GS+VPA A+I I DK+F+R+G++D+LA+G+STFMVEM E ++IL AT++S Sbjct: 630 LITIMAQIGSFVPAKKANISICDKIFTRIGASDDLAAGKSTFMVEMWEVSNILKNATSKS 689 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYL--HETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 V+LDE+GRGT+T DGLSIAW+ IEY+ ++ RC+ L ATH+HELT L +++ N + Sbjct: 690 LVLLDEVGRGTSTYDGLSIAWSVIEYICNNKNLRCKTLFATHYHELTKLEDNIEGVKNYS 749 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + VS+ I+FL K+I G AD SYGI+V KLAGLP+ VI+RA +IL+ E Sbjct: 750 VSVSELENEIVFLRKIIRGGADQSYGIEVAKLAGLPSPVINRAKEILQHIE 800 >gi|119774182|ref|YP_926922.1| DNA mismatch repair protein MutS [Shewanella amazonensis SB2B] gi|166232133|sp|A1S4E6|MUTS_SHEAM RecName: Full=DNA mismatch repair protein mutS gi|119766682|gb|ABL99252.1| DNA mismatch repair protein MutS [Shewanella amazonensis SB2B] Length = 854 Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust. Identities = 320/889 (35%), Positives = 487/889 (54%), Gaps = 56/889 (6%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L+ TPMMRQY+ +K+ +PD L+FYRMGDFYELF+DDA AS L I+LT RGK G Sbjct: 8 DLEKHTPMMRQYLTMKAAHPDMLLFYRMGDFYELFYDDAKRASEMLSISLTARGKSGGDP 67 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM G+P H Y+ KL+++G +AICEQI P AK V R VVR+VTPGTLT Sbjct: 68 IPMAGIPYHAVEGYLAKLVQLGQSVAICEQIGDPATAK-----GPVERKVVRVVTPGTLT 122 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIF 199 ++ LL N L AV + + + A +D+++G F I+ + + L +++ R P E+++ Sbjct: 123 DEALLQERQDNLLAAVYQGKVGYGFATLDVASGRFVIAELPSREALEAELQRTSPAELLY 182 Query: 200 SEKELSHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFG-SFS 253 SE F +G + +P FD+ + + + + FG + + Sbjct: 183 SED----------FGDMGLINHIRGKRRRPEWEFDYDTCIKMLLEQFGTRDLRGFGIADA 232 Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 ++ AA + Y+K TQ P I R + ++ +D+A R NLE+ +LSGSRE + Sbjct: 233 RLSLQAAGCLMQYVKDTQRTALPHINSIVRFNQGDSIILDAATRRNLELTVSLSGSRENT 292 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ I PL I R ++ ++ L ++ LK+ D Sbjct: 293 LASVLDNTVTAMGSRMLQRWIHQPLRCHDTIRGRQQAVQELLETG-LYEDLRAELKALGD 351 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF---LKNDLPEELRGAVEKLKKLPQS 430 + R L+RL + P+D A +RD + IL L L+ L+ L P+ Sbjct: 352 IERILARLALRSARPRDFARLRDAL----GILPLIRERLQRCDARHLKSLNILLGDFPEE 407 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 E L + D+ P RDGG +R+G D+ LDE R L D + ++L+ E T I Sbjct: 408 YE-LLCRAIVDNPPVLIRDGGVIREGYDSELDEWRKLSDGGIDYLEQMELREKERTGIAT 466 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ N GY+IEV+ + ++++ + RQT+ N R+ T EL + E ++ ++ Sbjct: 467 LKVGFNRVHGYYIEVSRAQSALVPI------AYQRRQTLKNTERYITPELKEYEEKVLSS 520 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 AL +E + +E L + I+ + + L + + + +D+ A A NY P + ++T Sbjct: 521 QGKALALEKQLWEELFDLILPKLQELQDFALAASELDVLANFADRADLFNYHCPELSDTT 580 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 +++ GRHP+VE+ S PFI N +LS N ++ ++TGPNMGGKST++RQ Sbjct: 581 GILIEAGRHPVVERV----SQSPFIPNPVELS-----NHRRMLIVTGPNMGGKSTYMRQV 631 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI +MA +GS+VPA A IG VD++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT Sbjct: 632 ALITLMAHIGSFVPAERALIGPVDRIFTRIGASDDLASGRSTFMVEMTETANILHNATAN 691 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V++DEIGRGT+T DG+S+AW+ EYL + L ATH+ ELT L + L HN L Sbjct: 692 SLVLMDEIGRGTSTYDGMSLAWSAAEYLAQKLGAMTLFATHYFELTQLPEMLPGVHNVHL 751 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM 850 + ++ I F+H V G A SYG+QV LAG+P VI A L E H Sbjct: 752 DAIEHDDTIAFMHAVQEGAASKSYGLQVAALAGVPANVIKAAKHKLLQLESRDHGVDMSK 811 Query: 851 RLYYPEIQTKE-SKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + P T E S L +++ ++ +++SP AL+ L+ +K Sbjct: 812 QQALPLTMTPEPSAAEL---------RLEAIDPNDLSPRQALELLFELK 851 >gi|312135299|ref|YP_004002637.1| DNA mismatch repair protein muts [Caldicellulosiruptor owensensis OL] gi|311775350|gb|ADQ04837.1| DNA mismatch repair protein MutS [Caldicellulosiruptor owensensis OL] Length = 863 Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust. Identities = 319/886 (36%), Positives = 507/886 (57%), Gaps = 44/886 (4%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 ++ TPMM+QY+EIK D ++F+R+GDFYE+FF+DA++AS+ L I LT R + Sbjct: 1 MQELTPMMQQYMEIKQKVKDCILFFRLGDFYEMFFEDAIVASKELEIALTSRDCGNNEKA 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A YI KLI+ G+++AICEQ+E P AK +V+R + R++TPGT + Sbjct: 61 PMCGVPYHSATSYIAKLIEKGYKVAICEQVEDPKLAK-----GIVKREITRIITPGTFID 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD--RLISDIMRIDPREIIF 199 + L T +N++ +++ R E+A+ ++D+STG D +L+++I + +P EI+ Sbjct: 116 ENL--STANNFICCISKNRFEFALTFVDVSTGEMYSCLIEEDLQKLLNEIGKYNPSEILI 173 Query: 200 SEKELSHAEYKSLFETLGN--VAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 S E L+E L + Q F D I + N+ +D S Sbjct: 174 SRSE------DELYEYLKKNCTSFVQMIEFVDLQKCYEIIENQINVGKIDERLILS---- 223 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLK 316 + Y+ +TQ ++ I E IQ+ L ID + NLE+ ++ S++ SLL Sbjct: 224 --VGNLLKYLTETQKISFDYIRRFEFYRIQNYLQIDINTKRNLELTESIIQRSKKNSLLG 281 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D + T G RL + I PL D +IN RLDS+ + ++ I+++L D+ R Sbjct: 282 ILDQTKTSMGSRLLKKWIERPLIDVIEINRRLDSVEQLKSSYSILVQIEELLSRMYDIER 341 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 S+ KD+ ++ I + L L + + L+ E L L + + + Sbjct: 342 LSSKFAYKNVNAKDLLSLKRSIEV-LPALKKLLSSFSAQLLKEIYEGLDTL-EDIYALVD 399 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 S +++ P ++GG ++DG + +D R++ SK ++ + K T IKNL+I +N Sbjct: 400 SSINEGAPVTLKEGGIIKDGFNEEVDRLRNISKNSKELLVQYEEKERNLTGIKNLRIGYN 459 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+IEVT S+ S++ DR+I +QT++N R+ T EL LE+ I A + Sbjct: 460 KVFGYYIEVTKSNYSLVP------DRYIRKQTLANAERYVTEELKKLEDEILGADQKLIE 513 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E + F + + I Q E + + IAI+D+ + A +A + Y RP + +K+ Sbjct: 514 LEYQLFCEIRDRIEAQIERIQKTASYIAILDVLCSFARIAIDNEYVRPNVYLGDKIYIKN 573 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VEK + + + FI ND +L D+ ++ ++TGPNM GKST++RQ ALIVIM Sbjct: 574 GRHPVVEKMIGRGN---FIPNDTEL----DQVENRILIITGPNMAGKSTYMRQVALIVIM 626 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQMG +VPA AHIGIVDK+FSR+G++D+++SG+STFMVEM E A+IL AT +S +I D Sbjct: 627 AQMGCFVPADEAHIGIVDKIFSRIGASDDISSGQSTFMVEMSEVANILKNATPKSLIIFD 686 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 E+GRGT+T DGLSIAWA +EY+ + ++ + L ATH+HELT+L + + N + V + Sbjct: 687 EVGRGTSTYDGLSIAWAVLEYVADKSKIGAKTLFATHYHELTELEERIPGVKNYRVDVKE 746 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 + +IFL K++ G D SYGI V +LAG+P V+ RA +ILK E+ N+K +R Sbjct: 747 EGKNVIFLRKIVRGGCDSSYGIHVARLAGIPEDVLKRAEEILKQLEEA-DINRKSIRKLR 805 Query: 855 PEIQTK--ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 EI+ + E + S + ++KI+ L++ ++P+ AL L +K Sbjct: 806 REIKKEFTEQIDFFSYKKEEIIDKIEKLDILNITPVQALNILSELK 851 >gi|311745087|ref|ZP_07718872.1| DNA mismatch repair protein MutS [Algoriphagus sp. PR1] gi|126577600|gb|EAZ81820.1| DNA mismatch repair protein MutS [Algoriphagus sp. PR1] Length = 868 Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust. Identities = 308/881 (34%), Positives = 498/881 (56%), Gaps = 35/881 (3%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M+QY IK+ +P +L+ +R+GDFYE F +DA+ AS+ L I LTKR I + G Sbjct: 10 TPLMKQYNAIKAKHPGALLLFRVGDFYETFGEDAVKASKVLDIVLTKRANGSASHIELAG 69 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H+ + Y+ KL++ G+R+AIC+Q+E P + K +V+R V LVTPG DQ+L Sbjct: 70 FPHHSLDTYLPKLVRAGNRVAICDQLEDP-----KSVKGIVKRGVTELVTPGLSFNDQVL 124 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 +NYL ++ + + IA++D+STG F + N L + P EIIFS+ Sbjct: 125 DTKRNNYLASIHFGKDKHGIAFLDLSTGEFMCAEGNSSYLEKLVQSFAPSEIIFSK---- 180 Query: 206 HAEYKSLFETLGN--VAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 A KS E L + + + + + + ++ ++ + FG Q T AA A Sbjct: 181 -AAKKSAQELLKDDYITFHCEDWVYQYDFTYEKLKTHFKTANLKGFGIEDQELGTVAAGA 239 Query: 264 I-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 + Y+++T+ I R + +++D NLE++ L++ +D ++ Sbjct: 240 VLHYLEETEHKEIQHISAISRIAEEKYVWLDKFTIRNLELVYP-QHEGGVPLIQILDQTV 298 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G R+ + + PL + T I RL+ ++FF QN LI I LK D+ R +S++ Sbjct: 299 TPMGSRMMKKWMVLPLKEKTAIEERLNVVDFFYQNSTLIEEIVSELKHIGDLERLISKVV 358 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 +GR P++I I+ +++ I I + D P L+ ++L LEK + + L +D Sbjct: 359 VGRANPREINQIKKALKAIIPIKEMLKGQDNPT-LKRLSDQLNLCEYLLEK-IENELKED 416 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P GG ++DG D LDE R+L + K + LQ + + T I +LKI N GY+ Sbjct: 417 APMLTHQGGIIKDGVDDELDEYRNLANSGKDFLVQLQQREVKNTGITSLKIAFNKVFGYY 476 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 +EVT + + ++ +I +QT+ N R+ T EL + E +I NA + +E + F Sbjct: 477 LEVTHAHKDKVPQE------WIRKQTLVNAERYITPELKEYEEKILNAEERLVGLEQKYF 530 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 L + + +++I +D+ ++ A +A +Y RP I ++ KDGRHP++ Sbjct: 531 LELVQEAAKYVTQIQQNARIIGTMDVLLSFAQIALTNDYSRPKISDTETLEYKDGRHPVI 590 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 E+ L + ++ ND L D +S ++ ++TGPNM GKS LRQ ALIV+MAQMGS+ Sbjct: 591 ERQL--SPGENYVPNDVYL----DHDSQQIMIITGPNMAGKSALLRQTALIVLMAQMGSF 644 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPAS+A +GI+DK+F+RVG++DNL+ G STFMVEM ETASILN +++S V++DEIGRGT Sbjct: 645 VPASFARVGIIDKVFTRVGASDNLSKGESTFMVEMTETASILNNLSSRSLVLMDEIGRGT 704 Query: 743 ATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 +T DG+SIAW+ +EYLH T + + L ATH+HEL L++ + N + V + +I Sbjct: 705 STYDGISIAWSIVEYLHNHTTFKAKTLFATHYHELNQLTEDFPKIKNFNVSVKEVGNKVI 764 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 F+ K+ PG ++HS+GI V ++AG+PN V+ RA +I+ EK N++ + + EI Sbjct: 765 FMRKLKPGGSEHSFGIHVAQMAGMPNPVVLRAAEIMAHLEKDKALNEQ--KENFKEIPKN 822 Query: 861 ESKNNLSKNDKLFVEK---IKCLNLDEMSPLTALKTLYAVK 898 + +L + D F E I+ ++++ +SP+ AL L+ +K Sbjct: 823 NYQMSLFEMDPKFKEAKELIEEIDINAISPIEALLKLHEIK 863 >gi|153940053|ref|YP_001391055.1| DNA mismatch repair protein MutS [Clostridium botulinum F str. Langeland] gi|189030763|sp|A7GE45|MUTS_CLOBL RecName: Full=DNA mismatch repair protein mutS gi|152935949|gb|ABS41447.1| DNA mismatch repair protein MutS [Clostridium botulinum F str. Langeland] gi|295319105|gb|ADF99482.1| DNA mismatch repair protein MutS [Clostridium botulinum F str. 230613] Length = 932 Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust. Identities = 304/825 (36%), Positives = 488/825 (59%), Gaps = 38/825 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY+E+K D ++F+R+GDFYE+FF+DA +AS+ L + LT R L + PMCG Sbjct: 4 TPMMRQYLEVKESCKDCILFFRLGDFYEMFFEDAKVASKELELVLTGRDCGLEERAPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H AN Y+ +L+ G++IAICEQ+E P +K +V+R +++++TPGT T+ L Sbjct: 64 IPYHAANTYVGRLVSAGYKIAICEQLEDP-----SASKGIVKRGIIKIITPGTYTDSSFL 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREIIFSEKE 203 +NY+M+ A+++ DISTG F + SN ++ +I + PREI+ E+ Sbjct: 119 EENKNNYIMSFYLDDNMCAMSFADISTGEFNSTHSNFKEAVVLDEISKFAPREIVL-EEN 177 Query: 204 LSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 + + ++ E N+++++ FD++I + + N + + K +A Sbjct: 178 IKESFIHTIKERFPNISISKIKEENFDYNIDNNLKEQFNNFNE----NEYETIVKKSANG 233 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYS 321 + YI TQ I + I L ID +R NLEI L +++ SLL +D + Sbjct: 234 LLYYIFHTQKNILSNINKIDYYSIVDYLTIDVNSRRNLEITENLREKTKKGSLLWVLDKT 293 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T GGR I PL + I RL+++ + N L +++ LKS D+ R + ++ Sbjct: 294 NTAMGGRQLRRWIEQPLINKNPIENRLNAVEELLNNISLQEDLKEDLKSIYDIERIVGKV 353 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFL---KNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 K++ ++ I + + +L K+DL + ++ L+ + + L+K L Sbjct: 354 ASKSVNAKELISLKCSI-GKVPYIKKYLSGFKSDLFLNMEQCIDTLEDIHKLLDKALL-- 410 Query: 439 LSDDLPTFK-RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 D P+ ++G +++G + +D R + K+ IASL+ K EET IK+LK+ +N Sbjct: 411 ---DNPSLSVKEGNIIKEGFNEEVDSLREAKSNGKKWIASLEQKEKEETGIKSLKVSYNK 467 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GYFIE+T ++ +++ + R+I +QT+SN R+ T EL ++E +I A + I Sbjct: 468 VFGYFIEITKANLNLV-----PEGRYIRKQTLSNAERYITPELKEMEEKILGAEEKLIDI 522 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + F + + I E + + +++I+ ID +LA +A E NY +P I+ ++++G Sbjct: 523 EYKLFTEIRDFIEENIDRMQKTARIISDIDCLCSLATVALENNYIKPNINAKDEILIEEG 582 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VEK + + FI+ND + D +L L+TGPNM GKST++RQ ALI IMA Sbjct: 583 RHPVVEKVIPKGE---FISNDSLI----DTKENQLILITGPNMAGKSTYMRQVALITIMA 635 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+GS+VPA A+I I DK+F+R+G++D+LA+G+STFMVEM E ++IL AT++S V+LDE Sbjct: 636 QIGSFVPAKKANISICDKIFTRIGASDDLAAGKSTFMVEMWEVSNILKNATSKSLVLLDE 695 Query: 738 IGRGTATLDGLSIAWATIEYL--HETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 +GRGT+T DGLSIAW+ IEY+ ++ RC+ L ATH+HELT L +++ N ++ VS+ Sbjct: 696 VGRGTSTYDGLSIAWSVIEYICNNKNLRCKTLFATHYHELTKLEDNIEGVKNYSVSVSEL 755 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 I+FL K+I G AD SYGI+V KLAGLP+ VI+RA +IL+ E Sbjct: 756 ENEIVFLRKIIRGGADQSYGIEVAKLAGLPSPVINRAKEILQHIE 800 >gi|307718809|ref|YP_003874341.1| DNA mismatch repair protein MutS [Spirochaeta thermophila DSM 6192] gi|306532534|gb|ADN02068.1| DNA mismatch repair protein MutS [Spirochaeta thermophila DSM 6192] Length = 867 Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust. Identities = 328/898 (36%), Positives = 489/898 (54%), Gaps = 67/898 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY E K + ++F+R+GDFYE+F DDA ASR LGITLT+R IPMCG Sbjct: 6 TPMMQQYWEFKKRYREEILFFRLGDFYEMFADDAKEASRILGITLTQR-----NGIPMCG 60 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H A +YI +L++ G +IAICEQ+E P K RG L RR V+ ++TPGT+T+++LL Sbjct: 61 IPFHAAQNYIARLLRAGKKIAICEQVEVP--EKGRG---LARREVIEVITPGTVTDEELL 115 Query: 146 SPTDSNYLMAVARIRTEW-AIAWIDISTGIFKIST---SNHDRLISDIMRIDPREIIFSE 201 +N+L+A A E +++ +++STG F T S + L ++ RI P E+I E Sbjct: 116 EKQKNNFLLAAAPAGKERVSLSCVELSTGEFLAGTAPGSFAEILARELARISPSELILPE 175 Query: 202 KELSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTA 259 + E + + + G + V + P+ +FD S R+ ++ + FG E Sbjct: 176 SAMEEPEIEKVLDAHGEIYVNRFPDWYFDPRTSFERLVRHFRSVNLKAFGLEEDSPELIT 235 Query: 260 AAAAISYIKKTQMVNKPTIG--YPEREDIQSTLFIDSAARSNLEILRTLS-GSREQSLLK 316 A + Y++ T P + +P RE + L +D NLE+++ + G +L + Sbjct: 236 AGPLLQYLEDTCHTLLPHVRSIHPYRE--EDALLLDETTIRNLELVKNIQDGGEHFTLYR 293 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 ++++ T G RL I PL I RL+++ ++ L+ ++K+ S D+ R Sbjct: 294 VLNHTTTPMGARLLRRWILYPLVTPADIEARLEAVEHLYRDQHLLQTLRKLFASMLDIER 353 Query: 377 SLSRLKIGRGEPKDIAVIRDGIR---------SGINILNLFLKNDLPEELRGAVEKLKKL 427 +R+ + + KD+ I I SGI + FL LP +L E L L Sbjct: 354 LATRVALDKAHAKDLLAIAGTIEAYEEAFALLSGIEAFSSFL---LPMDL---FETLSTL 407 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 SL L D+ T +G +R+G D +D R+LRD S+ I+ + E + Sbjct: 408 ADSL----LPALMDNPSTSLNEGNIIREGYDPEVDRCRTLRDHSQEILDRYLQEERERSG 463 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 I +LK+K+N +GYF EVT ++A ++ FI RQT+ RFTT LI+LE+++ Sbjct: 464 ISSLKLKYNKVIGYFFEVTRANAHLVP------SYFIPRQTLVQTQRFTTERLIELESQL 517 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 A + +E + F L E L + +A ID +LA A Y RP++ Sbjct: 518 AEAEERLVELERKIFMDLRERTKTHLEGLLALGKSVAAIDCLQSLAYAATRYGYTRPVVT 577 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 VK+GRHP+VE L S F+ ND L P L ++TGPNM GKSTFL Sbjct: 578 TELVLDVKEGRHPVVEAHLPTGS---FVPNDLLLDPPRRT----LAVITGPNMAGKSTFL 630 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQNALIV+MAQMGS+VPA A IGI D+LF RVG++DN+A G STF+VEM ETA IL+ A Sbjct: 631 RQNALIVLMAQMGSFVPAKEAVIGIADRLFCRVGASDNIARGESTFLVEMNETAYILHHA 690 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 T +S +I+DE+GRGT T+DGLSIAWA +EYL E + R L ATHFHELT ++ N Sbjct: 691 TPRSVIIMDEVGRGTGTIDGLSIAWAVVEYLLERVKARTLFATHFHELTKITHPA--VFN 748 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ 847 ++ V + +GI+FL +V G A+ SYGI V +LAG+P V+ RA + E+ + Sbjct: 749 LSMAVREDRDGIVFLKRVRAGAAEKSYGIHVARLAGVPEAVVKRA----RAIEEALSRRE 804 Query: 848 KDMR-----LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAW 900 +D+ P +++ + L +L E++ +++ +PL AL A+ W Sbjct: 805 EDLTGTEGGPSIPPADSRDEQPELFSPYELLAEELSHFDVERHTPLEALN---AIARW 859 >gi|145631568|ref|ZP_01787335.1| DNA mismatch repair protein [Haemophilus influenzae R3021] gi|144982837|gb|EDJ90359.1| DNA mismatch repair protein [Haemophilus influenzae R3021] Length = 861 Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust. Identities = 317/889 (35%), Positives = 497/889 (55%), Gaps = 44/889 (4%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 EEN + TPMM+QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG+ G Sbjct: 4 EENFQQHTPMMQQYLKLKAENPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGQSAG 63 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM G+P H Y+ KL+++G +AICEQI P +K V R +VR+VTPGT Sbjct: 64 QPIPMAGMPYHAVEGYLAKLVQLGESVAICEQIGDPTTSK-----GPVERQIVRIVTPGT 118 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N + AV + + ++ +A +D+++G F++ ++ + L +++ RI P E+ Sbjct: 119 VSDEALLPERQDNLIAAVYQEKEKFGLATLDMTSGRFQLCEPADKETLRAELQRIAPVEL 178 Query: 198 IFSEK--ELSHAEY-KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 ++ E+ E++ E+ K L +P F+ S + + + + + FG Sbjct: 179 LYCEEFNEIAAIEHCKGLRR--------RPIWEFELSTAITLLNRQFGTKDLRAFG---- 226 Query: 255 VEKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS 309 VEK+ AA + Y K+TQ P I Q + +D+A R NLE+ + L+G Sbjct: 227 VEKSPLGLSAAGCLLQYAKETQRTALPHIQSISLIQNQDCIQLDAATRRNLELTQNLAGG 286 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 E +L +D +T G RL I P+ D K+ R SI + N L++ +Q L+ Sbjct: 287 TENTLSSVLDKCVTPMGSRLLKRWIHQPVRDVEKLKQRQQSIAEIL-NFDLVDELQPYLQ 345 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 D+ R L+R+ + P+D+ +R + I +L ++ P L ++ + Sbjct: 346 LVGDMERILARVALRSARPRDLTRLRTALEQ-IPVLRTIVQQKTPPFLTALFSQIADFSE 404 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 + L L + P RDGG + G +A LDE R L D + + + +L+ + E T I Sbjct: 405 QYD-LLQRALIETPPLLIRDGGVIAKGYNAELDEWRMLSDGATQYLENLEKRERESTGID 463 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LKI N GY+I+++ A ++ ++ RQT+ N R+ EL + E+++ Sbjct: 464 TLKIGFNAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKEYEDKVLK 517 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 + +AL +E + ++ L + ++ SL AS ++ +D+ + LA A NY P + Sbjct: 518 SKGAALALEKQLYDELFDLLLPHLGSLQLASLALSELDVLVNLAERADTLNYVMPTFCDE 577 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 + +K+GRHP+VE+ LK PFIAN +L+ ++ L ++TGPNMGGKST++RQ Sbjct: 578 VSVKIKNGRHPVVEQVLK----DPFIANPVELN-----HNRHLLIITGPNMGGKSTYMRQ 628 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI ++A +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT Sbjct: 629 TALITLLAYIGSFVPADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATA 688 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 QS V++DEIGRGT+T DGLS+AWA E+L + R L ATH+ ELT L + L+ N Sbjct: 689 QSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLEGIANIH 748 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 L + N I F+H V G A SYG+ V LAG+P +VI A L EK H+ + Sbjct: 749 LDALEHNNTIAFMHAVQDGAASKSYGLAVAALAGVPQSVIKLAKQKLTQLEKNSGHSAEQ 808 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E + + + E I+ L+ D++SP AL LY +K Sbjct: 809 QIQALREANHNQGELFFEQETDALREAIEKLDPDDLSPKQALAYLYQLK 857 >gi|254448222|ref|ZP_05061684.1| DNA mismatch repair protein MutS [gamma proteobacterium HTCC5015] gi|198262089|gb|EDY86372.1| DNA mismatch repair protein MutS [gamma proteobacterium HTCC5015] Length = 886 Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust. Identities = 312/890 (35%), Positives = 493/890 (55%), Gaps = 53/890 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ IK+ +P LVFYRMGDFYELFF+DA A++ +GITLT RG+ G+ IPM G Sbjct: 27 TPMMQQYLAIKAEHPHQLVFYRMGDFYELFFEDAQKAAKLIGITLTARGQSAGEPIPMAG 86 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ +L+K+G + ICEQ+ P +K V R V R++TPGT+T++ LL Sbjct: 87 VPHHAAEGYLARLLKLGESVVICEQVGDPAT-----SKGPVERKVTRIITPGTVTDEALL 141 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFK-ISTSNHDRLISDIMRIDPREIIFSEKEL 204 L A+ + IA+ID STG F+ I L++++ RI P E++ +E ++ Sbjct: 142 EERREQLLAAMYSREQQHGIAYIDTSTGAFRVIEVEGEASLMAELERIRPAELLLTETDM 201 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAA 263 E+ + + L + V++P FD +E + + + + FG + + +AA Sbjct: 202 DAPEHPT--QRL-HGRVSRPAWHFDQDTAERLLKEQFGTQDLSGFGCAHLSLALSAAGCL 258 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 ++Y+K TQ P I E + +D+A+R NLEI R LSG + +LL +D + + Sbjct: 259 LNYLKDTQRTALPHITGLTVEHRDDAILLDAASRRNLEIDRNLSGGEDNTLLSVLDTTRS 318 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINP-IQKILKSSPDVPRSLSRLK 382 G R + PL + R ++ +LIN + LK D+ R SRL Sbjct: 319 AMGSRNLQRWLRRPLRQREVLRQRHGAVEAL--QDVLINASLADGLKQIGDIERICSRLS 376 Query: 383 IGRGEPKDIAVIRDGI------RSGINILNLFLKNDLPEELRGAVEKLKKLPQSL--EKT 434 + P+D+ +R + R + LNL + + L+++ Q+L ++T Sbjct: 377 LKSARPRDLIQLRQTLSALPELRQPLASLNLESAD---------IALLQRIHQTLAPQET 427 Query: 435 LSSMLS----DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L +L D+ P RDGG +R+G DA LDE R L + + + L+ + E T I Sbjct: 428 LQDLLERAVIDNPPVLIRDGGVIREGYDAELDELRGLSQNADQFLTDLEQRERERTGIST 487 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ +N GY+IEV + + + + ++ RQT+ + R+ T EL E+++ +A Sbjct: 488 LKVAYNRVHGYYIEVGRTHSDNIPTE------YVRRQTLKAVERYITPELKGFEDKVLSA 541 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 AL E ++ L + ++ + ++ ++ +A +D LA A NYCRP + +S Sbjct: 542 RERALAREKALYDELLDQLLNELPTIQTLARALADLDTLNCLAERATALNYCRPEMVDSP 601 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 ++ GRHP+VE + PF ND L + ++ ++TGPNMGGKST++RQ Sbjct: 602 GVNIEQGRHPVVETLV----DDPFTPNDAVLG-----DDQRMLMITGPNMGGKSTYMRQT 652 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALIV++A +GS+VPAS +G +D++F+R+G++D+LA GRSTFMVEM E A+IL+ A++ Sbjct: 653 ALIVLLAHVGSFVPASACRLGPIDQIFTRIGASDDLAGGRSTFMVEMTEAANILHNASDN 712 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V++DEIGRGT+T DGLS+AWA E+L E R L ATH+ ELT L S+ N L Sbjct: 713 SLVLMDEIGRGTSTYDGLSLAWACAEHLAEKTRALTLFATHYFELTSLPDSIDGIANVHL 772 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM 850 + + G++F+H V G A+ SYG+QV +LAG+P V++ A L E+ + Sbjct: 773 DAVEHDSGLVFMHSVKDGPANQSYGLQVARLAGVPPAVVANARKRLALLEQG---AAQAS 829 Query: 851 RLYYPEIQTKESKNNLSKNDK-LFVEKIKCLNLDEMSPLTALKTLYAVKA 899 P++ E+ + +D+ E + L+ DE+SP AL+ +Y +KA Sbjct: 830 AQQTPQLGLFEAPPADAGSDQNPLEEALADLDPDELSPKQALEEIYHLKA 879 >gi|309389297|gb|ADO77177.1| DNA mismatch repair protein MutS [Halanaerobium praevalens DSM 2228] Length = 868 Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust. Identities = 317/884 (35%), Positives = 502/884 (56%), Gaps = 43/884 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY ++K+ DS++F+R+GDFYE+F DA A++ L I LT R K G+ IPM G Sbjct: 5 TPMMKQYHDLKNKYQDSILFFRLGDFYEMFGQDAKKAAKILDIALTARNKGGGEKIPMAG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI+KLIK G ++AICEQ+E P + +V+R+V+R+VTPGT+ E+++L Sbjct: 65 VPYHSAASYIEKLIKNGIKVAICEQLEDP-----SASSGIVKRDVIRVVTPGTVIENEIL 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS---TSNHDRLISDIMRIDPREIIFSEK 202 + ++NYL A + + ++ DISTG F ++ S D+L +I RI PREI+ +K Sbjct: 120 AENENNYLAAAFKYGNYYGFSYTDISTGEFYLTEFPASETDKLKDEINRISPREILLDQK 179 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISE--SRIADYYNITTVDTFGSFS-QVEKTA 259 A+ K L + L N+ N+ + I D++ + +++ FG + A Sbjct: 180 ---IAQTK-LIKELQNIYNFTLNILENKKYDRLYQGILDHFQLKSLEGFGCEEMKAAVYA 235 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTI 318 A ++Y+ TQ I + ++ + +DSA+R NLE+ T+ R SLL I Sbjct: 236 AGQVLAYLGDTQKRTINQITLLKAYHLEDYMVLDSASRRNLELTATIRDNQRSGSLLSII 295 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D ++T GGR + I PL I R ++ I N +++ ++ L D+ R + Sbjct: 296 DQTVTSMGGREIKKWINQPLIQKKAIEQRHTALEEIIDNYQVLDKLRAELNEIYDLERIM 355 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLS 436 S++ +D+ +++ + + NL LK+DL E++ + L+ + +EK + Sbjct: 356 SKITYQSANARDLVALKNSLAKLPAVENLMQNLKSDLIIEMQTKFDLLEDMHDLIEKAIK 415 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 S + PT +GG + ++SLD+ R L K I LQ + E+T I LK+ N Sbjct: 416 S----EPPTTITEGGIIASDYNSSLDQLRDLVSSGKDWITKLQKEEREKTGINTLKVGFN 471 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY++EVT+S + +R+ +QT+SN R+ +L + E + A Sbjct: 472 KVFGYYLEVTNSHTDKVP------ERYERKQTLSNSERYIIPKLKEKEAEVLGAEEKIND 525 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E + F + I ++ E ++ + VIA +D+ +A + LA E NY +P ++N +K+ Sbjct: 526 LEHKLFIEIREKIAQEVERINQTAAVIAQLDVLLAFSYLAIENNYTKPEVNNGPAIKIKN 585 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VEK +Q F+ NDC L D+ + ++TGPNM GKST++RQ ALIV+M Sbjct: 586 GRHPVVEKMFTEQ----FVPNDCYL----DQTEQRFVIITGPNMSGKSTYMRQVALIVLM 637 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+GSYVPA A IG+ D++F+RVG++D+L +G+STFMVEM E A+I+N +T +S +ILD Sbjct: 638 AQVGSYVPAEEALIGLTDRIFTRVGASDDLTTGQSTFMVEMNEVANIVNNSTEKSLIILD 697 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 E+GRGT+T DG+SIAW+ EYL+ R R L ATH+HELT L N + V + Sbjct: 698 EVGRGTSTYDGVSIAWSVSEYLNNPERIGARTLFATHYHELTRLEDEYPGIKNYNVLVEE 757 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 G+ FLH++I G AD SYGI+V +LAGLP +I A IL EK +NQ +R Sbjct: 758 DKNGVHFLHRIIEGRADDSYGIEVARLAGLPEEIIISAQKILNRLEK---NNQMPVRKLE 814 Query: 855 PEIQTKESKN--NLSKNDKLFVEKIKCLNLDEMSPLTALKTLYA 896 + + + +K + ++K+ ++ EM+P+ A+ LY+ Sbjct: 815 KTVTDSQHQQLPLFNKENNPVLKKLDEQDILEMTPMDAMNFLYS 858 >gi|284108785|ref|ZP_06386450.1| DNA mismatch repair protein [Candidatus Poribacteria sp. WGA-A3] gi|283829859|gb|EFC34150.1| DNA mismatch repair protein [Candidatus Poribacteria sp. WGA-A3] Length = 874 Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust. Identities = 309/889 (34%), Positives = 500/889 (56%), Gaps = 45/889 (5%) Query: 27 PMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGV 86 P+++QY +IK D++VF+R+GDFYE+F++DA A+ L I LT R K+ +P+CGV Sbjct: 8 PLLKQYWDIKRHYADAIVFFRVGDFYEMFYEDAKEAATLLNIALTTRDKNSPNPVPLCGV 67 Query: 87 PVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLS 146 P H A Y+ KL+K G +A+CEQ+E P + K LV+R VVRL TPGT+ +D+LL Sbjct: 68 PYHAATSYLAKLLKAGKTVALCEQVEDP-----KAAKGLVKREVVRLYTPGTIFDDELLD 122 Query: 147 PTDSNYLMAV------ARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIF 199 +N+L A+ A R + +A ID+STG F I+ + D ++ +++R+ P+E++ Sbjct: 123 AKAANFLAALSVQLDPADSRCGFGLASIDLSTGQFLIAEFTEQDLMLDELIRLGPQEVLI 182 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 E+ + A K L QP+ F+ S+ + ++ + D G + Sbjct: 183 PEQTDTIALDKLLAPLRLPRVTPQPSAHFELHASQEFLQVHFGVDRPDVLGLSPEGPGVQ 242 Query: 260 AAAAI-SYIKKTQ------MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 A I Y+K+TQ + KP + P RE + +D+ NLE+++TL+ +E Sbjct: 243 AGGCILRYLKQTQPTLEHHHIQKPELLEPTRE-----MHLDAMTMRNLELVQTLNPDQEH 297 Query: 313 S-LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 + LL +D ++T G RL + + PL D+ I RL++++ F+ N L ++ LK Sbjct: 298 ATLLSILDQTVTAMGSRLLRQWVVRPLIDNESIQRRLNAVSTFLDNLKLRLHVRSFLKDL 357 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSL 431 D+ R SR+ IG P+D+ +++ + ++ LF + + + L ++ + + + Sbjct: 358 HDLERLSSRIVIGTATPRDVLRLKESLTILPKLVQLF--DGIADPLLNSLLQRWDVLSDV 415 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + + + P ++G ++G D +DE R++ + + L+ + E++ I +L Sbjct: 416 TALIEDSIDPNAPASVKEGPIFQNGVDPVIDELRTMSRNGVQWLTDLEQREREQSGIDSL 475 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 KIK+N GY+ EVT ++ S + + F +QT+ N R+TT +L +E +++ A Sbjct: 476 KIKYNQVFGYYFEVTKANLSRVP------EYFRRKQTLVNAERYTTQDLEGIEAQLSGAN 529 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 E E F+ + + + ++ +A++D+ A +A Y +P + + Sbjct: 530 EKLRRAEQERFQTMLQTLSGHVFRIQKMAKHVALMDVLSNFAEVAARNRYVKPDMHDGGI 589 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 +K+GRHP+VE+ + FI ND L D ++ +L LLTGPNM GKSTFLRQ Sbjct: 590 ICIKNGRHPVVEQF---DLPEGFIPNDSYL----DFDAHRLLLLTGPNMAGKSTFLRQTG 642 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LIV+MA MG +VPAS A IG++D+LF+RVG++DNLA G STFMVEM+ETA IL AT++S Sbjct: 643 LIVLMAHMGCFVPASEAKIGVIDRLFTRVGASDNLALGLSTFMVEMLETAKILRGATSRS 702 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNAT 789 ++LDEIGRGT+T DGLS+AWA E++ + R L ATH+HE+T+L + N T Sbjct: 703 LILLDEIGRGTSTYDGLSLAWAIAEHIQDRRILGARTLFATHYHEMTELETFREGVQNLT 762 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 + V + + +IFL K+ G A SYGI VGKLAGLP+T+I+RA ++L E+ + Sbjct: 763 VAVKEEKDDVIFLRKITQGKATRSYGIHVGKLAGLPSTLIARAQEVLAQLEQETASESRS 822 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 R+Y Q E + + S +E+IK L L M+PL AL L ++ Sbjct: 823 NRIYQ---QGLEHEGSFSPQPHPLIEEIKQLELFAMTPLEALNRLAEIQ 868 >gi|197335682|ref|YP_002155290.1| DNA mismatch repair protein MutS [Vibrio fischeri MJ11] gi|238690254|sp|B5FAC8|MUTS_VIBFM RecName: Full=DNA mismatch repair protein mutS gi|197317172|gb|ACH66619.1| DNA mismatch repair protein MutS [Vibrio fischeri MJ11] Length = 854 Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust. Identities = 315/880 (35%), Positives = 492/880 (55%), Gaps = 43/880 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ +KS NPD L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IPM G Sbjct: 10 TPMMQQYLRLKSENPDILLFYRMGDFYELFYDDAKRASQLLEISLTKRGSSAGEPIPMAG 69 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H Y+ KL++ G +AICEQI P +K V R VVR+VTPGT+T++ LL Sbjct: 70 IPYHAVEGYLAKLVQQGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTVTDEALL 124 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSN-HDRLISDIMRIDPREIIFSEKEL 204 N + A+ + ++ A +DI++G FK+S N + +++++ R P E++FSE Sbjct: 125 PERFDNLIAAIYHHKGQFGYATLDITSGRFKVSEPNTEEAMLAELQRTAPTELLFSED-- 182 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAA 263 E L E N +P F+ ++ ++ + + + FG ++ AA Sbjct: 183 --FEPVHLLEKR-NGNRRRPVWEFELDTAKQQLNNQFGTRDLVGFGVERAEFGLCAAGCL 239 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 I Y+K TQ P I + ++ +D+A R NLEI + L+G +L + +D++ T Sbjct: 240 IQYVKDTQRTTLPHIRSIIMDHQDDSVILDAATRRNLEITQNLAGGFNHTLAEILDHTST 299 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL + P+ +N RLD+I ++ + + I LK+ DV R L+RL + Sbjct: 300 AMGSRLLKRWLHQPVRTHDVLNQRLDAIGELKESGLFAD-IAPQLKNIGDVERILARLAL 358 Query: 384 GRGEPKDIAVIRDGIRSGINILNL---FLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 P+D+A +R+ ++ + F +N L L + + + + + LE+ + Sbjct: 359 RSARPRDLARLRNALQQLPELSQTTQEFQQNHLLT-LAASAQPIDSICELLERAIK---- 413 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 ++ P RDGG L DG + LD+ R L + + + + L+ + E I LK+ +NN G Sbjct: 414 ENPPVVIRDGGVLADGYNEELDQWRDLANGATQYLEKLEQEERERHDIDTLKVGYNNVHG 473 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 ++I+++ + ++ ++ RQT+ N R+ EL + E+++ N+ + AL IE Sbjct: 474 FYIQISKGQSH------KAPAHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALAIEKR 527 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 +E L + ++ E L + + I+ +D+ LA A NYCRP++ T ++ GRHP Sbjct: 528 LWEELFDQLLPHLEQLQSMANAISELDVLSNLAERADTLNYCRPVLTKETGINIEGGRHP 587 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE+ + S PFIAN L+ P+ K + ++TGPNMGGKST++RQ ALI +MA +G Sbjct: 588 VVEQVM----SDPFIANPIKLN-PDRK----MLIITGPNMGGKSTYMRQTALIALMAHVG 638 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 YVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V++DEIGR Sbjct: 639 CYVPADSAEIGTLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKHSLVLMDEIGR 698 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GT+T DGLS+AWA+ E+L L ATH+ ELT+L N L + + I Sbjct: 699 GTSTYDGLSLAWASAEWLATKINAMTLFATHYFELTELPNLFTGLANVHLDAVEHGDEIA 758 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 F+H V G A+ SYG+ V LAG+P +VI +A +KL H + + K Sbjct: 759 FMHAVQEGAANKSYGLAVASLAGVPKSVIKKAK------QKLQHLESGQVSVPATSTTVK 812 Query: 861 ESKN-NLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 E +L E + +N D+++P AL+ LY +KA Sbjct: 813 EEHQLSLIPEISEVEEALANVNPDDLTPRQALEELYRLKA 852 >gi|78357019|ref|YP_388468.1| DNA mismatch repair protein MutS [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|90109846|sp|Q30ZX3|MUTS_DESDG RecName: Full=DNA mismatch repair protein mutS gi|78219424|gb|ABB38773.1| DNA mismatch repair protein MutS [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 904 Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust. Identities = 311/920 (33%), Positives = 492/920 (53%), Gaps = 81/920 (8%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM QY+ IK+ PD+L+FYRMGDFYELFF+DA +A+R L I LT R + +PMCG Sbjct: 9 TPMFEQYMNIKAEYPDALLFYRMGDFYELFFEDAEVAARELQIALTCRNPNAENKVPMCG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI +L+ G+++AICEQ+E P EAK LV+R V+R++T GT ED+ L Sbjct: 69 VPHHSARSYISQLVDKGYKVAICEQMEDPREAK-----GLVKRGVIRVLTSGTALEDENL 123 Query: 146 SPTDSNYLMAVARIRTEWA--IAWIDISTGIFK-ISTSNHDRLISDIMRIDPREIIFSEK 202 SP YL A+ ++E A AW+D STG + + + L + ++ PRE++ ++ Sbjct: 124 SPKAHTYLGALCWDKSEGAGGFAWVDFSTGEWSGLQSRKEQELWQWVQKMAPRELLLADT 183 Query: 203 -------ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQV 255 EL+ ++ + E +FD+ S +I + + G ++ Sbjct: 184 LTPPASLELTETQFSKVPE----------RAYFDYKRSAEKIMSAQQVAELGALGLENRK 233 Query: 256 EKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-S 313 E A A+ +Y+ +TQ + + + ++ L +D NLE+ R L G + + + Sbjct: 234 ELVRACGALLTYLSQTQKQDLNHLCQFKPLNLNRHLLLDEITERNLELFRRLDGRKGKGT 293 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D+++T GGRL ER+ P + I+ ++++ F + L +++ L + D Sbjct: 294 LWHVLDHTVTPMGGRLLQERLKHPWREQAPIDETQEAVSHFFAHNTLRRQLREALDTVYD 353 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFL-------KNDLPEELRGAVEKLKK 426 + R +R+ + R P+D +R +++ + L + PEE GA Sbjct: 354 IERLSTRIFLNRATPRDYVALRQSLKALPAVRELLEAPQTGDGRYATPEEQLGAA----- 408 Query: 427 LPQSLEKTLSSM-------------LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKR 473 LP L + L S L D+ P +GG R G +LDE L + Sbjct: 409 LPPFLHRMLKSWDDLADYHDLLEKALVDNPPHVITEGGLFRQGFHPALDELMDLSEHGAS 468 Query: 474 IIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLT 533 + L + + T I +K+ +N GY+ EV S + E D F+ RQT++N Sbjct: 469 KLHDLLAEVQQTTGISKIKLGNNRVFGYYFEVPKSVSE------ELPDTFVRRQTLANAE 522 Query: 534 RFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALA 593 R+T+ L +LE ++ +A + +EL+ F+ L + + + + ++A +D LA Sbjct: 523 RYTSERLKELEEKLFSAADKRKTMELKLFQQLREHVAQARPRVLFMADLLATLDHWQGLA 582 Query: 594 ILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLW 653 A+ N+ RP++ + + ++++GRHP+VE Q FI ND + + +L Sbjct: 583 EAARHWNWVRPVLHDGQDIVIREGRHPVVEAV---QGPAGFIPNDLRID-----DQRRLL 634 Query: 654 LLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTF 713 L+TGPNM GKST LRQ A+I I+AQ+GS+VPA A IG+ D++FSRVG++DNLA G+STF Sbjct: 635 LITGPNMAGKSTVLRQAAIICILAQIGSFVPAREARIGLCDRIFSRVGASDNLAQGQSTF 694 Query: 714 MVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC--RGLLATH 771 MVEM+ETA IL QAT +S VILDEIGRGT+T DGL++AWA +E L + + R L ATH Sbjct: 695 MVEMMETARILRQATRRSLVILDEIGRGTSTFDGLALAWAVVEELMKKQQAGIRTLFATH 754 Query: 772 FHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISR 831 +HELT L ++ HN + + + I+FL +++PG +D SYG++V KLAG+P V+ R Sbjct: 755 YHELTSLEGTIPGVHNMNIAIKEWGGEIVFLRRLVPGPSDRSYGVEVAKLAGVPQNVVQR 814 Query: 832 AYDILKTFEKL-----------YHHNQKDMRLY--YPEIQTKESKNNLSKNDKLFVEKIK 878 A IL+ E+ YH Q + P + E ++ + + ++ Sbjct: 815 ARQILELLEQKSKADGTRRPASYHEAQPLLPGMPEPPSTASAEPPQTVTPPEPPVLTALR 874 Query: 879 CLNLDEMSPLTALKTLYAVK 898 L+ D ++PL AL L K Sbjct: 875 DLDTDNLTPLEALTVLTEWK 894 >gi|269960385|ref|ZP_06174758.1| DNA mismatch repair protein MutS [Vibrio harveyi 1DA3] gi|269834812|gb|EEZ88898.1| DNA mismatch repair protein MutS [Vibrio harveyi 1DA3] Length = 921 Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust. Identities = 318/892 (35%), Positives = 488/892 (54%), Gaps = 62/892 (6%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 + TPMM+QY+++K+ NP+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IP Sbjct: 73 QKHTPMMQQYLKLKAENPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIP 132 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+T++ Sbjct: 133 MAGVPFHAVEGYLAKLVQLGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTVTDE 187 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFK-ISTSNHDRLISDIMRIDPREIIFSE 201 LLS N + A+ + ++ A +D+++G F+ + + + +++ R PRE++F E Sbjct: 188 ALLSERIDNLIAAIYQHNGKFGYATLDVTSGRFQLVEPETEEAMAAELQRTAPRELLFPE 247 Query: 202 K-ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTA 259 E H + N +P F+ ++ ++ + + FG + + A Sbjct: 248 DFEAVH------LMSSRNGNRRRPVWEFELDTAKQQLNQQFGTRDLVGFGVEHASLGLCA 301 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A I Y+K TQ P I + ++ +D+A R NLE+ + LSG + +L + +D Sbjct: 302 AGCLIQYVKDTQRTALPHIRSLTFDRQDHSVILDAATRRNLELTQNLSGGTDNTLAEVLD 361 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G R+ + P+ +N RLD+I I++ L IQ I K D+ R L+ Sbjct: 362 HCATPMGSRMLKRWLHQPMRCVDTLNNRLDAIGE-IKDQSLFTDIQPIFKQIGDIERILA 420 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRG-----AVEKLKKLPQ----- 429 RL + P+D+A +R ++ LPE L A LKKL Q Sbjct: 421 RLALRSARPRDMARLRHAMQQ------------LPE-LEAVTSSLAHPYLKKLAQFAAPM 467 Query: 430 -SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 + L + ++ P R+GG + +G +A LDE R L D + + L+ E I Sbjct: 468 DQVCDLLERAIKENPPVVIREGGVIAEGYNAELDEWRKLADGATEYLEKLEADERERHGI 527 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 LK+ +N G+FI+V+ + ++ ++ RQT+ N R+ EL + E+++ Sbjct: 528 DTLKVGYNAVHGFFIQVSRGQSHLVPP------HYVRRQTLKNAERYIIPELKEHEDKVL 581 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 N+ + AL +E + +E L + ++ E + N + I+ +D+ LA A +YCRP +D Sbjct: 582 NSKSKALAVEKKLWEELFDLLMPNLEKMQNLASAISQLDVLQNLAERADSLDYCRPTLDK 641 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 ++ GRHP+VE Q +S+PFIAN +LS ++ K+ ++TGPNMGGKST++R Sbjct: 642 EAGISIQAGRHPVVE----QVTSEPFIANPIELS-----SARKMLIITGPNMGGKSTYMR 692 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q ALI +MA +GSYVPA AHIG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT Sbjct: 693 QTALIALMAHIGSYVPAESAHIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNAT 752 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA 788 S V++DEIGRGT+T DGLS+AWA+ E+L L ATH+ ELT+L L N Sbjct: 753 KNSLVLMDEIGRGTSTYDGLSLAWASAEWLATQIGSMTLFATHYFELTELPNLLPNLANV 812 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 L + + I F+H V G A SYG+ V LAG+P VI A L E+L Sbjct: 813 HLDAVEHGDSIAFMHAVQEGAASKSYGLAVAGLAGVPKPVIKNARHKLSQLEQLGQGTDS 872 Query: 849 DMRLYYPEIQTKESKNNLS--KNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P T + N LS + + ++ D+++P AL+ LY +K Sbjct: 873 ------PRPSTVDVANQLSLIPEPSDVEQALSNIDPDDLTPRQALEELYRLK 918 >gi|113460154|ref|YP_718210.1| DNA mismatch repair protein MutS [Haemophilus somnus 129PT] gi|123131917|sp|Q0I1B8|MUTS_HAES1 RecName: Full=DNA mismatch repair protein mutS gi|112822197|gb|ABI24286.1| DNA mismatch repair protein MutS [Haemophilus somnus 129PT] Length = 856 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 317/896 (35%), Positives = 484/896 (54%), Gaps = 64/896 (7%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 ++ TPMM+QY++IK+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG+ G+ Sbjct: 3 TFENHTPMMKQYLKIKAENPDVLLFYRMGDFYELFYDDAKKAAELLDISLTKRGQSAGQP 62 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 +PM GVP H Y+ KL+ +G +AICEQ+ P+ AK V R VVR+VTPGT++ Sbjct: 63 VPMAGVPYHAIEGYLAKLVHLGESVAICEQVGEPVIAK-----GPVERQVVRIVTPGTVS 117 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIF 199 ++ LL N + + + +T++ +A +D+++G F+IS + L +++ RI P E+++ Sbjct: 118 DEALLPEKQDNLIATIYQEKTQFGLAVLDMTSGCFQISELQDAASLQAELQRIQPVELLY 177 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT- 258 SE E K L E + +P F+ S + + + + FG VEK Sbjct: 178 SEA----LEDKHLIEQFKGLR-RRPLWEFELSTAIQLLNRQFGTKDLRGFG----VEKAV 228 Query: 259 ----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSL 314 AA + Y K+TQ P I T+ ID++ R NLE+ + L+G E +L Sbjct: 229 LGLCAAGCLLQYAKETQRTALPHIQSISLLQNSDTVQIDASTRRNLELTQNLAGGTENTL 288 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 +D +T G RL I P+ + K+ R I +Q L+ +Q +L+ D+ Sbjct: 289 AAILDKCVTPMGSRLLKRWIHQPIRNIEKLQCRQQHIQMLLQQN-LVEELQPLLRQVGDM 347 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE-- 432 R L+R+ + P+D+ +R + E++ +L K+P + Sbjct: 348 ERILARVALRSARPRDLTRLRTAL----------------EQIPFIQHQLTKIPHFVAFS 391 Query: 433 ----------KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L + D+ P RDGG + +G + LDE RSL + + R + L+ + Sbjct: 392 QQIADFSVQLALLQRAIIDNPPLLIRDGGVIAEGYNEELDEWRSLSEGATRYLKDLEQRE 451 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 T I LKI N GY+I+++ A ++ ++ RQT+ N R+ EL Sbjct: 452 RANTGIDTLKIGFNAVHGYYIQISQGQAH------KAPLHYVRRQTLKNAERYIIPELKT 505 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E ++ A ++L +E + ++ + + ++ L AS +A +D+ LA A+ NY Sbjct: 506 YEEKVLKAKGASLALEKQLYDEIFDQLLPHLGDLQLASLTLAELDVLTNLAERAETLNYV 565 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 +P + GRHP+VE+ LK PFIAN +L N K L ++TGPNMGG Sbjct: 566 QPQFSTQIGLQIMQGRHPVVEQVLK----DPFIANPVEL---NQKR--HLLIITGPNMGG 616 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+ Sbjct: 617 KSTYMRQTALITLMAYIGSFVPAESAVIGPIDRIFTRIGASDDLASGRSTFMVEMTEMAN 676 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+QAT QS V++DEIGRGT+T DGLS+AWA E L + R L ATH+ ELT L + + Sbjct: 677 ILHQATEQSLVLIDEIGRGTSTYDGLSLAWACAEQLAQKIRSLTLFATHYFELTVLPEKI 736 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 HN L + N+ I F+H + G A SYG+ V LAG+P VI A LK E L Sbjct: 737 DGIHNVHLDAIEHNDNIAFMHSIQEGAASKSYGLAVAALAGVPQNVIKSAKQKLKQLETL 796 Query: 843 YHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 N + ++Q + + +N +E +K L+ +E+SP AL+ LY +K Sbjct: 797 SQQNSCQSQSVLTQVQGELTLMEEEENTSAVIETLKTLDPNELSPKQALECLYQLK 852 >gi|20089412|ref|NP_615487.1| DNA mismatch repair protein MutS [Methanosarcina acetivorans C2A] gi|44888230|sp|Q8TTB4|MUTS_METAC RecName: Full=DNA mismatch repair protein mutS gi|19914310|gb|AAM03967.1| DNA mismatch repair protein [Methanosarcina acetivorans C2A] Length = 900 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 330/913 (36%), Positives = 503/913 (55%), Gaps = 62/913 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK-HLGKDIPMC 84 TP MRQY E K PD+L+F+RMGDFYE F +DA ++ L ITLT RGK G+ +P+ Sbjct: 6 TPAMRQYYEAKQAYPDTLIFFRMGDFYESFGEDAKTIAKELEITLTARGKDRTGERMPLA 65 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G+P H + Y+ +LI G+++AICEQ+E P +AK +V+R VVR+VTPGT + + Sbjct: 66 GIPYHAIDTYLPRLINKGYKVAICEQLEDPKKAK-----GVVKRGVVRVVTPGTAIDSSM 120 Query: 145 LSPTDSNYLMAVA-----------RIRTEWAIAWIDISTGIFKIS----TSNHDRLISDI 189 S +NYLMAVA E+ I+++DISTG F + + N D+L+S++ Sbjct: 121 FSDASNNYLMAVAGREGGKSGKNGEKEMEFGISFLDISTGEFLTTQFTDSENFDKLLSEL 180 Query: 190 MRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTF 249 R+ P E I ++E V P VF E ++ ++ + T++ Sbjct: 181 ARMHPAECILPPSLYGNSELTGKLREHTIVQEFAPEVFGTEEAGE-KLKTHFGVATLEGM 239 Query: 250 GSFS-QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG 308 G + +A AA+ Y K TQM + I + +DS NLEI++ + Sbjct: 240 GCQKLEFAVYSAWAALEYAKTTQMRDLTHINTLRTYSNTEFMILDSITLRNLEIVKNVRD 299 Query: 309 -SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI 367 E SL +T++ + T G R + + PL KIN RLD+I ++ +L I+ Sbjct: 300 EGDENSLYRTLNCTRTPMGNRTLKKWLLKPLLSVEKINPRLDAIEELAEDSLLRYDIRDW 359 Query: 368 LKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL 427 L D+ R + R+ G +D+ ++ + ++ + L+ E L+ E L Sbjct: 360 LSDVRDIERLVGRIVYGNASARDLVALKKSLGVVPSLRDSLLEKARFEMLKEIAEGLASF 419 Query: 428 PQ--SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE 485 + L + + + D+ P R+GG ++ G LDE R + SK+ IA+ Q K E Sbjct: 420 SELEELAEMIEIAIMDEPPVSVREGGMIKSGYSPELDELRDISSNSKQWIAAFQQKERER 479 Query: 486 TKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 + IK+LK+ +N GY+IEVT +++S + +D +I +QTM+N RF T EL + E+ Sbjct: 480 SGIKSLKVGYNKVFGYYIEVTHANSSQVPED------YIRKQTMANAERFFTPELKEKES 533 Query: 546 RITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPI 605 I A A+ +E E F ++ + +S L ++ I +D+ +LA + NY RP Sbjct: 534 LILTANEKAVALEYEIFAEITRTLSARSRELQETAERIGTLDVLASLAEATENNNYTRPQ 593 Query: 606 IDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKST 665 + +++DGRHP+VE T+ S F+ ND ++ C ++ L+TGPNM GKST Sbjct: 594 LTEDCKILIRDGRHPVVESTV----SGGFVPNDTEMDCKENQ----FLLVTGPNMAGKST 645 Query: 666 FLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILN 725 ++RQ ALI IMAQ+GS+VPASYA +GI+D++F+R+G+ D+LASG+STFMVEM+E A+ILN Sbjct: 646 YMRQTALIAIMAQVGSFVPASYASVGIIDQVFTRIGAFDDLASGQSTFMVEMVELANILN 705 Query: 726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC--RGLLATHFHELTDLSKSLK 783 A+ +S V+LDEIGRGT+T DG SIA A +E+LH + R L ATH+H+LT L + LK Sbjct: 706 NASPKSLVLLDEIGRGTSTYDGYSIAKAVVEFLHNRGKVGIRALFATHYHQLTALEEKLK 765 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY 843 R N + V + ++FL K++PG D SYGI V +LAG+P VI RA +ILK E+ Sbjct: 766 RVKNYHIAVKEDGHELVFLRKIVPGATDRSYGIHVARLAGVPEKVIERANEILKELEREN 825 Query: 844 -------HHNQK-----------DMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEM 885 N K M L+ P ++ S+ +K +K +N DEM Sbjct: 826 VLEEAEDGENGKKKKSKATARYTQMLLFDPGSGSRSSEK--AKGLSPVEAALKKVNPDEM 883 Query: 886 SPLTALKTLYAVK 898 +P+ AL L+ +K Sbjct: 884 TPIEALNKLHELK 896 >gi|254786792|ref|YP_003074221.1| DNA mismatch repair protein MutS [Teredinibacter turnerae T7901] gi|259511176|sp|C5BMR5|MUTS_TERTT RecName: Full=DNA mismatch repair protein mutS gi|237683787|gb|ACR11051.1| DNA mismatch repair protein MutS [Teredinibacter turnerae T7901] Length = 864 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 321/887 (36%), Positives = 488/887 (55%), Gaps = 41/887 (4%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 E NL+ TPMM+QY+ IK+ +P+ LVFYRMGDFYELF++DA A++ L +TLT RGK G Sbjct: 9 EVNLEQHTPMMQQYLRIKAQHPNELVFYRMGDFYELFYEDARKAAKLLDVTLTARGKSNG 68 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM GVP H A +Y+ KL+K+G +AICEQI P K V R V+R+VTPGT Sbjct: 69 EPIPMAGVPYHAAENYLAKLVKLGVSVAICEQIGDPAT-----TKGPVERKVMRVVTPGT 123 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREI 197 ++++ LL N+L+A++ +++ IA +D+ +G F + D LIS+I R+ P EI Sbjct: 124 VSDEALLDEHRDNWLVAISAHESQFGIACLDMGSGRFSVFEIEGEDALISEIERLRPAEI 183 Query: 198 IFSEKELSHAEYKSLFETLGNVA--VAQPNVFFDHSISESRIADYYNITTVDTFGSFS-Q 254 + + +L + N A +P FD + ++ +D FG Sbjct: 184 L-------APDLLTLPPGVRNKAGYRGRPEWEFDIESGLRSLCAHFATKDLDGFGCRGLT 236 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSL 314 V AA +Y K+TQ I E+ +T+ +D+A R NLE+ L+GS E +L Sbjct: 237 VALGAAGCLYAYAKETQRTELSHIASLVVENPDNTVSLDAATRRNLELDINLNGSEENTL 296 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 ++ + T GGRL I +PL D +++R +I ++N +Q+ LK D+ Sbjct: 297 FSVLNTTATAMGGRLLRRWINTPLRDLHTLHSRQSAIAALLEN-YRFEQVQQELKHIGDL 355 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R L R+ + P+D+ + + + + L LK+ E L ++ + P L + Sbjct: 356 ERILGRIALRSARPRDLTRLLNSL-AIYPQLQPLLKSAECETLATLASEINEFP-GLVQE 413 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L L ++ P R+GG + +G D LDE R + + + L+ + E T + LK+ Sbjct: 414 LDKALVENPPVVIREGGVIAEGYDEELDELRGISTNAGEFLVKLETQERERTGLNTLKVG 473 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GYFIE++ S A ++ +I RQT+ N RF T EL E++ +A + A Sbjct: 474 YNRVHGYFIEISKSQAE------KAPAEYIRRQTLKNAERFITPELKTFEDKALSAKSRA 527 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L E +E L + E L ++ +A +D+ A A +P + Sbjct: 528 LSREKALYEQLIEKLNEHLRELQISAVAVAELDVLNTFAERAHALKLVKPEFRGEAGIEI 587 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 + GRHP+VE+ L + PFI ND L+ ++ ++TGPNMGGKST++RQ ALIV Sbjct: 588 EKGRHPVVEQVL----TDPFIPNDLTLNAQQ-----RMLIITGPNMGGKSTYMRQTALIV 638 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++AQ+GSYVPA +G+VD++F+R+GS+D+LA GRSTFMVEM ETA+ILN AT+ S V+ Sbjct: 639 LLAQVGSYVPAEACRLGLVDRIFTRIGSSDDLAGGRSTFMVEMTETANILNNATSDSLVL 698 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA +E+L E + L ATH+ E+T L L N L ++ Sbjct: 699 MDEIGRGTSTYDGLSLAWACVEHLAEKLKSFTLFATHYFEITALPAQLPTVKNVHLDATE 758 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM--RL 852 + I+FLH + G A SYG+QV KLAG+P V+ +A D+L E + + R Sbjct: 759 YQDNIVFLHNIQAGPASKSYGLQVAKLAGIPGAVLRQAKDVLHKLETGKPESPAPVASRS 818 Query: 853 YYPEIQTKE-SKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P +Q ++ SK +K I D++SP AL+ +Y +K Sbjct: 819 SKPSMQADMFAEPQPSKVEKRLATVIP----DDLSPRQALELVYELK 861 >gi|317131677|ref|YP_004090991.1| DNA mismatch repair protein MutS [Ethanoligenens harbinense YUAN-3] gi|315469656|gb|ADU26260.1| DNA mismatch repair protein MutS [Ethanoligenens harbinense YUAN-3] Length = 871 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 301/830 (36%), Positives = 465/830 (56%), Gaps = 43/830 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY+ +K + D ++F+R+GDFYE+FFDDA LASR L +TLT + L + PMCG Sbjct: 5 TPMMRQYMAVKEQHKDEILFFRLGDFYEMFFDDARLASRELELTLTGKDCGLDERAPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+ +YI +L++ G+++AICEQ E P AK LV+R +VR+VTPGT+ E +L Sbjct: 65 VPYHSCENYIARLVEKGYKVAICEQAEDPKLAK-----GLVKREIVRVVTPGTVIEGSML 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD----RLISDIMRIDPREIIFSE 201 + +NYL AV + + + D+STG + + +L ++ R PRE++F+ Sbjct: 120 DESRNNYLAAVCVRDGQAGVVFADVSTGEAHATLLAGEELDVKLTGELGRFAPREVLFNG 179 Query: 202 KELSHAEYKSLFETLGNVAVAQPN--VFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 L+ A + +V QP F + ++ G V A Sbjct: 180 GSLALAGVERFARERLGASVTQPQEEAFSPDVAPLCAQFGKPDAAALELDGKEPAVR--A 237 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTI 318 A ++Y+++TQ+ + + + +D + R NLE+ TL G ++ +LL + Sbjct: 238 LNALLAYLRQTQITGLERLNQLDVYSDAQFMRLDLSTRRNLELCETLRGREKRGTLLWVL 297 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D + T G RL I PL I RL +++ + +L + +IL D+ R + Sbjct: 298 DRTKTAMGKRLLRAWIEQPLLHPGPITRRLAAVDELFSDAVLREDVMEILDGVHDLERLM 357 Query: 379 SRLKIGRGEPKDIAVIRD------GIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE 432 +R+ G +++ + + G++ + L +D+ + LP E Sbjct: 358 TRIVYGTANARELRALAETIGRLPGLKERVAPCKARLLSDI-------ARNIDPLPDLFE 410 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 ++ + +D P R+GG +R G A +D R + K +A ++ + E+T IKNLK Sbjct: 411 -LITKAVEEDPPVSVREGGLIRPGYHAEIDSLREIMRGGKGFLAEVEAREKEKTGIKNLK 469 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 I +N GY+IEVT S+ + + +D +I +QT++N R+ T EL +LE R+ A Sbjct: 470 IGYNRVFGYYIEVTKSNIAQVPED------YIRKQTLTNCERYITQELKELEGRVLGAQE 523 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 + +E + F+ + + EQ + + + +A +D+ + A A YCRP + Sbjct: 524 RVVQLEYDVFDGVRRQVAEQLHRIQSTAGALAGLDVLCSFAQAAAMNRYCRPDLGVDGRI 583 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 +KDGRHP+VE L S PF+ ND +L D + ++ ++TGPNM GKST++RQ AL Sbjct: 584 SIKDGRHPVVEAIL---SGVPFVPNDTEL----DMDGDRVAIITGPNMAGKSTYMRQVAL 636 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 I +MAQ+GS+VPAS AHIG+VD +F+RVG++D+LASG+STFMVEM E ASIL AT S Sbjct: 637 ITLMAQIGSFVPASAAHIGVVDSIFTRVGASDDLASGQSTFMVEMTEVASILENATQNSL 696 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRC--RGLLATHFHELTDLSKSLKRFHNATL 790 V+LDEIGRGT+T DG+SIA A +E++ + RC + L ATH+HELT L L N ++ Sbjct: 697 VLLDEIGRGTSTFDGMSIARAVVEHVADLKRCGAKTLFATHYHELTVLEDQLSGVRNYSV 756 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 V E + FL ++IPG AD SYGI+V KLAG+P V++RA +IL+ E Sbjct: 757 AVKKHGEELTFLRRIIPGGADDSYGIEVAKLAGIPARVVTRAREILRELE 806 >gi|315181177|gb|ADT88091.1| DNA mismatch repair protein [Vibrio furnissii NCTC 11218] Length = 853 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 306/887 (34%), Positives = 494/887 (55%), Gaps = 52/887 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 + TPMM+QY+++K+ NP+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IP Sbjct: 5 QKHTPMMQQYLKLKAENPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIP 64 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+T++ Sbjct: 65 MAGVPFHAVEGYLAKLVQLGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTVTDE 119 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSE 201 LLS N + A+ + A +DI++G F++ ++ + + ++ R PRE++F E Sbjct: 120 ALLSERVDNLIAAIYHHDGRFGYATLDITSGRFQLCEPTSEEAMAGELQRTSPRELLFPE 179 Query: 202 KELSHAEYKSLFETLGNVAVAQ-----PNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 FE + +A + P F+ ++ ++ + + FG +++ Sbjct: 180 D----------FEPVQLMASRKGNRRRPVWEFELDTAKQQLNQQFGTRDLVGFGVEQAKL 229 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA I Y+K TQ P I + ++ +D+A R NLE+ + L+G + +L Sbjct: 230 GLCAAGCLIQYVKDTQRTALPHIRSLTFDRQDQSVILDAATRRNLELTQNLAGGTDNTLA 289 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 + +D+ T G R+ + P+ +N RLD+I Q+ L + +LK D+ Sbjct: 290 EVLDHCATPMGSRMLKRWLHQPMRGLDTLNQRLDAIGELKQH-ALFAELHPVLKQIGDIE 348 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEK 433 R L+RL + P+D+A +R ++ + ++ LP +LR + + L + LE+ Sbjct: 349 RILARLALRSARPRDLARLRHALQQLPELADVLSSLTLPYLGQLRDDAQPMDNLCELLEQ 408 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + ++ P RDGG + DG +A LDE R L + + + L+ E I LK+ Sbjct: 409 AIK----ENPPVVIRDGGVIADGYNAELDEWRDLANGATEYLDKLEADERERHGIDTLKV 464 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N G++I+V+ + ++ ++ RQT+ N R+ EL + E+++ N+ + Sbjct: 465 GYNAVHGFYIQVSRGQSHLVPP------HYVRRQTLKNAERYIIPELKEHEDKVLNSKSK 518 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E + +E L + ++ E + N + ++ ID+ LA A+ +YCRP + + Sbjct: 519 ALALEKQLWEALFDQLLPHLEQMQNLASALSQIDVLQNLAERAESLDYCRPTLSDEPGIR 578 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 ++ GRHP+VE+ + S+PFIAN +L+ K+ ++TGPNMGGKST++RQ ALI Sbjct: 579 IQAGRHPVVEQVM----SEPFIANPIELNPQR-----KMLIITGPNMGGKSTYMRQTALI 629 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 ++A +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT +S V Sbjct: 630 ALLAHIGSYVPAEAAQIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATERSLV 689 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA+ E+L + L ATH+ ELT+L +L N L Sbjct: 690 LMDEIGRGTSTYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNALPHLANVHLDAV 749 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 + + I F+H V G A SYG+ V LAG+P VI A L E+L ++ Sbjct: 750 EHGDSIAFMHAVQEGAASKSYGLAVAGLAGVPKAVIKNARTKLTQLEQL------SLQQP 803 Query: 854 YPEIQTKESKNNLS--KNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + T + N LS + + ++ D+++P AL+ LY +K Sbjct: 804 SSKPNTVDIANQLSLIPEPSEVEQSLAEIDPDDLTPRQALEALYRLK 850 >gi|88813098|ref|ZP_01128339.1| DNA mismatch repair protein [Nitrococcus mobilis Nb-231] gi|88789582|gb|EAR20708.1| DNA mismatch repair protein [Nitrococcus mobilis Nb-231] Length = 855 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 320/884 (36%), Positives = 477/884 (53%), Gaps = 50/884 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TPMM+QY+ IK+ +PD L+FYRMGDFYELF+DDA A+R L ITLT RG+ G+ IP Sbjct: 9 KPHTPMMQQYLRIKAEHPDILMFYRMGDFYELFYDDARRAARLLDITLTSRGESAGEPIP 68 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVPVH Y+ KL++ G +AICEQ P K V R VVR+VTPGTLT++ Sbjct: 69 MAGVPVHAYESYLSKLVRRGESVAICEQFGDPAT-----TKGPVERRVVRIVTPGTLTDE 123 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSN-HDRLISDIMRIDPREIIFSE 201 LL S L AV + IA +++++G F +S N D L +++ R+ P E++ +E Sbjct: 124 ALLDERRSALLAAVKCNAERFGIAALELASGRFTVSEINGADELQAELERLRPAELLLAE 183 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAA 260 + A S+ + G +P+ FD ++ ++ + + FG + AA Sbjct: 184 DVAAPA---SIAQRPG--LTHRPSWHFDIQTAQRLLSRQFGTQDLHGFGVVDLPLAIGAA 238 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 + Y+ TQ P I E + +L +D+ +R NLE+ LSG+ E +L +D Sbjct: 239 GCLLQYVSDTQRAALPHIRSLRVEAREDSLLLDATSRRNLELEYNLSGATEHTLAWVLDS 298 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 ++TG G RL I PL D ++ R ++ F+ N L +++ L DV R +R Sbjct: 299 AVTGMGSRLLRRWINRPLRDHERLRHRQQALAAFMGNGHLTQ-LREQLHGLADVERITAR 357 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSL---EKT--- 434 + + P+D+ +R +R I D P +L L ++L KT Sbjct: 358 IAMKSARPRDLTGLRAALRRVPEIRATLEHCDAP--------RLAALAEALGDHSKTSDL 409 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L L D P RDGG + +G D LDE R LR + + + L+ + E T I NLK+ Sbjct: 410 LGRALVDTPPVLLRDGGVIAEGYDPPLDELRGLRRNADQYLLELEQREREATGIANLKVS 469 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+IE++ + + + D ++ RQT+ R+ T EL E++I +A A Sbjct: 470 YNRVHGYYIEISRGQSDL------APDHYLRRQTLKGAERYITPELKSFEDKILSARERA 523 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 LL E +E L + ++L ++ +A +D LA A+ +Y RP + + Sbjct: 524 LLREKMLYEELLERLAAGLDALLRCAEALAEVDTLACLAERAEALSYTRPELTAQPRVWI 583 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 + GRHP+VE+ L++ PF+AND L +S ++ ++TGPNMGGKSTF+RQ ALIV Sbjct: 584 EGGRHPVVEQVLEE----PFVANDLSLD-----DSNRMLIVTGPNMGGKSTFMRQTALIV 634 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++A +GS+VPA+ A IG +D++F+R+G++D+L GRSTFMVEM ETA+IL+ AT +S V+ Sbjct: 635 LLAHIGSFVPANQAVIGPIDRIFTRIGASDDLTGGRSTFMVEMTETAAILHNATPESLVL 694 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDEIGRGT T DGL++AWAT L L ATH+ ELT L + N L ++ Sbjct: 695 LDEIGRGTGTFDGLALAWATAADLAGRLGAFTLFATHYFELTALPEHYTSARNVHLDAAE 754 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 GI+FLH + G A+ SYG+QV LAG+P VI+ A L+ E+ Sbjct: 755 HGTGIVFLHALKEGPANQSYGLQVATLAGIPPAVITAARHKLRQLEETARARPPTRAAQL 814 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P + L E ++ L D ++P AL+ LY +K Sbjct: 815 PLFDPSPGQPAL--------ECLRELEPDTLTPRQALELLYELK 850 >gi|317472765|ref|ZP_07932077.1| DNA mismatch repair protein MutS [Anaerostipes sp. 3_2_56FAA] gi|316899757|gb|EFV21759.1| DNA mismatch repair protein MutS [Anaerostipes sp. 3_2_56FAA] Length = 872 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 313/887 (35%), Positives = 501/887 (56%), Gaps = 40/887 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY+ IK N D ++FYR+GDFYE+FFDDAL ASR L ITLT + + + PMCG Sbjct: 5 TPMMEQYMAIKEQNQDCILFYRLGDFYEMFFDDALTASRELEITLTGKNCGMEERAPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H + Y+ KL++ G+++AICEQ+E P + K +V+R V+R+VTPGT Q L Sbjct: 65 VPFHAVDSYLNKLVEKGYKVAICEQVEDP-----KQTKGIVKREVIRIVTPGTNISQQSL 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEK-E 203 +NYLM + + ++ +D++TG F+ ++ + +++ +I + P EII ++ Sbjct: 120 EDEKNNYLMCIFCSDDSFGLSVVDVTTGDFRTTSMDELHKVVDEIFKFAPAEIICNDAFM 179 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAA 262 +S + + + + LG + +FD E+ I +++ ++ G S + K A A Sbjct: 180 ISGVDIEFIKDKLGVSVSNIDHYYFDEEQGEAAIKSQFHVGNLNGLGLSDHPMGKIATGA 239 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYS 321 + Y+ +TQ + + + IDS++R NLE+ TL +++ SLL +D + Sbjct: 240 LLLYLHETQKNALNHLMSVSPYETSEYMIIDSSSRRNLELCETLRDKKKKGSLLGVLDKT 299 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G RL I PL D KI R D++ + I I++ L D+ R ++++ Sbjct: 300 KTAMGARLLRSMIEQPLIDRVKIEERYDALTSLTKQAIAREEIREYLNPVYDLERLMTKV 359 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 P+D+ ++ ++ + + L+ L G E L L + + L + + Sbjct: 360 SYQTINPRDMIALKVSLQ-WLPPIKTILEECGDSLLSGLREDLDTL-EDVAGLLEDAILE 417 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + ++GG ++DG +D+ + + K+ + L+ + T IK LK+K N GY Sbjct: 418 EPSIAVKEGGIIKDGFSEQIDQLKRAKTDGKQWLMQLEERERRATGIKTLKVKFNKVFGY 477 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +++VT+S KD + + +I +QT++N R+TT EL L + I A + +E E+ Sbjct: 478 YLDVTNSY-----KD-KVPEHYIRKQTLTNSERYTTEELNKLADTILGAEDRLCALEYET 531 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 F + + + E + + VIA +D+ +LA +A++ Y RP ++ +K+GRHP+ Sbjct: 532 FASIRETLAGEMERIKKTAGVIAYLDVLCSLACVAEQNGYVRPKLNTKGLIDIKEGRHPV 591 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE+ + S+ FI+ND L D ++ ++TGPNM GKST++RQ+ALIV+MAQ+GS Sbjct: 592 VEQMM---SNDMFISNDTYL----DSKRHRVSIITGPNMAGKSTYMRQSALIVLMAQIGS 644 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA A+IGIVD++F+RVG++D+LASG+STFMVEM E A+IL AT S +ILDEIGRG Sbjct: 645 FVPAQKANIGIVDRIFTRVGASDDLASGQSTFMVEMSEVANILRNATKDSLLILDEIGRG 704 Query: 742 TATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 T+T DGLSIAWA +EY+ + L ATH+HELT+L + +N + V + + I Sbjct: 705 TSTYDGLSIAWAVVEYISNPKLLGAKTLFATHYHELTELEGKIGSVNNYCIAVKEQGDNI 764 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 +FL K++ G AD SYGIQV KLAG+P+ VI RA +I+ + D+ +IQ Sbjct: 765 VFLRKIVKGGADKSYGIQVAKLAGVPDMVIQRAKEIVSEL------SDSDIVSQAQKIQV 818 Query: 860 KESKNNLS--KNDKL------FVEKIKCLNLDEMSPLTALKTLYAVK 898 LS ND F+ +I+ +L M+PL AL LY ++ Sbjct: 819 SSEPQQLSLFANDSEPMMEHPFMAEIRKKDLSSMTPLEALNYLYILQ 865 >gi|197286081|ref|YP_002151953.1| DNA mismatch repair protein MutS [Proteus mirabilis HI4320] gi|238690090|sp|B4F220|MUTS_PROMH RecName: Full=DNA mismatch repair protein mutS gi|194683568|emb|CAR44439.1| DNA mismatch repair protein [Proteus mirabilis HI4320] Length = 854 Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust. Identities = 313/894 (35%), Positives = 495/894 (55%), Gaps = 63/894 (7%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +N +S TPMM+QY+++K+ +P+ L+FYRMGDFYELFFDDA ASR L I+LTKRG+ G+ Sbjct: 5 QNFESHTPMMQQYLKLKAEHPEILLFYRMGDFYELFFDDAKKASRLLDISLTKRGQSAGQ 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H +Y+ KL+++G +AICEQI P +K V R V+R+VTPGT+ Sbjct: 65 PIPMAGVPHHAVENYLAKLVQLGESVAICEQIGDPATSK-----GPVERKVIRIVTPGTV 119 Query: 140 TEDQLLSPTDSNYLMAVARIRT-EWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 T++ LL N L A+ + + + A +DI++G F+++ + + + +++ R P E+ Sbjct: 120 TDEALLEERQDNLLAAIWQDKNGAFGYATLDITSGRFRVTEMPDSESMAAELQRTHPAEL 179 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQ-----PNVFFDHSISESRIADYYNITTVDTFG-S 251 ++ E FE++ + Q P F+ ++ ++ + + FG Sbjct: 180 LYPET----------FESMALIERQQGLRRRPIWEFECETAKQQLNLQFGTRDLTGFGVE 229 Query: 252 FSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 +++ AA + Y+K TQ P I E Q T+ +D+A R NLE+ + L+G + Sbjct: 230 NARLALCAAGCLLQYVKDTQRTGLPHIRSITMERPQDTIILDAATRRNLELTQNLAGGCD 289 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 +L +D +T G R+ I +PL ++ R D+I+ P+ +Q L+ Sbjct: 290 NTLASVLDLCVTPMGSRMLKRWIHTPLRQREQLIKRQDAISAL--QPLYFE-LQPFLRQV 346 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQ 429 D+ R L+RL + P+D++ +R + +I + + D+P +EL+ + + +L + Sbjct: 347 GDLERVLARLALRSARPRDLSRMRHAFQQYQDIHQVLDQADMPYIKELQQRISQFDELRE 406 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 LE + + P RDGG + G +A LDE R+L D + + L+++ E+ I Sbjct: 407 LLENAIV----ETPPVLVRDGGVIASGYNAELDEWRALADGASDYLEKLEVREREKWGID 462 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LK+ N GY+I+V+ ++++ ++ RQT+ N R+ EL + E+++ Sbjct: 463 TLKVGFNGVHGYYIQVSRGQSNLVPM------HYVRRQTLKNAERYIIPELKEYEDKVLT 516 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 + AL IE +E L ++ +L +++ +A D+ LA A+ NY RP + Sbjct: 517 SKGKALAIEKMLYEELFEKLLPHLTALQTSAEALAETDVLANLAERAESLNYTRPELTEK 576 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 T + GRHP+VE+ L S+PFI+N L+ +L ++TGPNMGGKST++RQ Sbjct: 577 TGIQITGGRHPVVEQVL----SEPFISNPLQLAPQR-----RLLIITGPNMGGKSTYMRQ 627 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI ++A +GS+VPA A IG +D++F+RVG++D+LASGRSTFMVEM ETA+IL+ AT Sbjct: 628 AALITLLAYIGSFVPAEKAVIGPIDRIFTRVGASDDLASGRSTFMVEMTETANILHNATE 687 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + L+ N Sbjct: 688 NSLVLMDEIGRGTSTYDGLSLAWACAENLANRIKAMTLFATHYFELTTLPEKLEGTANIH 747 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN--- 846 L + E I F+H V G A SYG+ V LAG+P VI RA LK E L H+ Sbjct: 748 LDAVEHGETIAFMHSVQEGAASKSYGLAVAALAGVPKEVIRRAKQKLKELETLSGHSGAS 807 Query: 847 --QKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + +I+ E + L+K D D ++P AL+ LY +K Sbjct: 808 HVETSQLMLLADIEPSEVELALNKIDP-----------DSLTPKQALELLYHLK 850 >gi|126699586|ref|YP_001088483.1| DNA mismatch repair protein [Clostridium difficile 630] gi|123174308|sp|Q187T6|MUTS_CLOD6 RecName: Full=DNA mismatch repair protein mutS Length = 949 Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust. Identities = 304/840 (36%), Positives = 486/840 (57%), Gaps = 58/840 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+E+K+ D ++F+R+GDFYE+FF+DAL+AS+ L I LT + L + PMCG Sbjct: 11 TPMMKQYLEVKNRYKDCILFFRLGDFYEMFFEDALVASKALEIALTGKACGLEERAPMCG 70 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+AN YI KL++ G+++AI EQ+E P AK +VRR V+R++TPGT+ + LL Sbjct: 71 VPFHSANSYISKLVENGYKVAIGEQMEDPSTAK-----GIVRREVIRVITPGTVLDGNLL 125 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 +NYL+++ + T + ++DISTG + N D++I +I +I P EII ++ + Sbjct: 126 ENKKNNYLLSLYKDGTNIGLTYVDISTGETNATCLNEDKVIEEIAKIHPTEIIINDLDF- 184 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE--------- 256 E L ++A N++ + S S+ +Y +I + + F V Sbjct: 185 -------IEKLRDIATVS-NIYINESFSD----NYLDINILKEY--FPDVYLQKLKFDDK 230 Query: 257 ---KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ- 312 K++ + ++YI TQ I + + +D R+NLE+ +T+ G++++ Sbjct: 231 GLIKSSLSILLNYIYNTQKQITSNINNINIYNSSEYMVLDMFTRTNLELTQTIRGNKKKG 290 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 SLL +D + T GGRL + + PL + +KI RLD I + IL + ILK+ Sbjct: 291 SLLHVLDKTSTAMGGRLLRKYVEEPLINKSKIENRLDVIEEIKDDFILREDLNDILKNIY 350 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGI------RSGINILNLFLKNDLPEELRGAVEKLKK 426 D+ R ++ R PK++ +++ I + IN+ N + L+ V ++ K Sbjct: 351 DIERICGKIAFERVTPKELIHLKNSIEKLPNLKDTINLSNAKI-------LKEYVSEMDK 403 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 L ++L + T K DG ++ L E R + ++ ++ + E+T Sbjct: 404 LDDIYNLIDEAILEEPTITIK-DGNIIKSDFSDELKELREISKNGAFLVKEIENREREKT 462 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 +K+LKI N GY+IE+T ++ K D + +I +QT+SN R+ T EL ++E + Sbjct: 463 GVKSLKIGFNKVFGYYIEITKANFKQAKLD----ETYIRKQTLSNAERYITPELKEIEEK 518 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 I +A +E E F + + I + + + ++ IA ID+ ++LA +A NY +P I Sbjct: 519 ILHAEEKIKSLEYEIFVEIRDTIYKNIDRIQKVAKTIANIDVFVSLATVAHINNYVKPAI 578 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 + + +++GRHP+VE + +++ F+ ND L ++ + ++TGPNM GKST+ Sbjct: 579 NENNKLDIRNGRHPVVENIVGEEN---FVPNDTYL----NRGENIINIITGPNMSGKSTY 631 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ A+I +MA +GS+VPA A I I+D++F+RVG++D+L+ G+STFMVEM E + IL Sbjct: 632 MRQTAIIALMAHIGSFVPAESADIPILDRIFTRVGASDDLSQGQSTFMVEMNEVSLILKN 691 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT +S VILDEIGRGT+T DG+S+AW+ +EY+ + RC+ L ATH+HELTDL + K Sbjct: 692 ATERSLVILDEIGRGTSTYDGISLAWSIVEYIQKNIRCKTLFATHYHELTDLEEEFKEVK 751 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN 846 N ++ V + EGIIFL K+IP AD SYGI V KLA LP+ VI RA ILK EK + +N Sbjct: 752 NYSIAVKEDGEGIIFLRKIIPQGADKSYGIYVAKLAKLPDEVIERAKYILKDLEKNHVYN 811 >gi|300113486|ref|YP_003760061.1| DNA mismatch repair protein MutS [Nitrosococcus watsonii C-113] gi|299539423|gb|ADJ27740.1| DNA mismatch repair protein MutS [Nitrosococcus watsonii C-113] Length = 863 Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust. Identities = 323/897 (36%), Positives = 488/897 (54%), Gaps = 71/897 (7%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TPMM+QY+ IK+ P +L+ YRMGDFYELF+DDA A+ L ITLT RG+ G+ IP Sbjct: 8 KPHTPMMQQYLRIKAEYPATLLLYRMGDFYELFYDDAQRAAELLDITLTSRGQSAGEPIP 67 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M G+P H + Y+ +L++ G +AICEQ+ P +K V R V R++TPGT+TE+ Sbjct: 68 MAGIPYHALDSYLARLVRQGESVAICEQVGDPAT-----SKGPVERQVARIITPGTVTEE 122 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSE 201 LL N L A+ R + A +D+ +G F I ++ IS++ RI P E++ SE Sbjct: 123 ALLEARRDNLLAALQREGDVFGFAVLDLCSGRFNILEVASESATISELARIRPAELLVSE 182 Query: 202 K-ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 L+ + K+ V P FD ++ ++ + + FG + KTA Sbjct: 183 DLALTLVDSKT-----DAVVRPLPPWHFDRESAQRQLCQQFGTQNLAGFGC--EEMKTAI 235 Query: 261 AAA---ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLK 316 AAA + Y++ TQ + P I + E ++++ +D + R NLE+ +LSG S +L+ Sbjct: 236 AAAGCLLHYVQDTQRAHLPHIHALQVERQETSIILDPSTRRNLELEESLSGHSNHNTLIA 295 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D + T G RL + PL D T + R ++ ++ L + +QK+L+ D+ R Sbjct: 296 VLDRTATAMGSRLLRRYLHRPLRDQTLLKQRQQALAALLEGG-LTDILQKLLRGIGDIER 354 Query: 377 SLSRLKIGRGEPKDIAVIRDG------IRSGINILNL--FLKNDLPEELRGAVEKLKKLP 428 LSR+ + P+D+ +R IR + LN L L E+L G KL +L Sbjct: 355 ILSRVALRSARPRDLVQLRQALGLLPKIRESLLQLNRDSILLQSLQEDL-GPFPKLHEL- 412 Query: 429 QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 L + ++ P RDGG + G D+ LDE R L + + + L+ + E TKI Sbjct: 413 ------LQRAICENPPVLIRDGGVIALGFDSELDELRHLSGNAGQFLVELEQRERERTKI 466 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 LKI +N GY++E+T + A D +I RQT+ R+ T EL E+++ Sbjct: 467 PTLKIGYNKVHGYYLEITRAQAHQAPPD------YIRRQTLKGAERYITPELKGFEDQVL 520 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 +A AL E +E L +E +L + +A +D+ LA AK Y P++ + Sbjct: 521 SARERALAREKALYEGLLEQFMEPLPALRACANALAELDVLHNLAERAKTLEYVVPLLSD 580 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 ++++GRHP+VE+TL+ PF+ ND L + + ++ ++TGPNMGGKST++R Sbjct: 581 QPGILIEEGRHPVVEQTLE----NPFVPNDLTL-----QETRRMLIITGPNMGGKSTYMR 631 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q ALIV++A +GS+VPA A IG +D++F+R+G+AD+LA GRSTFMVEM ETA+IL+ AT Sbjct: 632 QTALIVLLAHIGSFVPARRAVIGPIDRIFTRIGAADDLAGGRSTFMVEMTETANILHNAT 691 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA 788 S V+LDE+GRGT+T DGLS+AWA YL R L ATH+ ELT L + L N Sbjct: 692 QYSLVLLDEVGRGTSTFDGLSLAWAVASYLVNNARSLTLFATHYFELTALPEHLDGVANL 751 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 L ++ E I+FLH V G A SYG+QV LAG+P VI++A L E Sbjct: 752 HLTATEHKERIVFLHAVKEGPASQSYGLQVAALAGVPQEVIAQARQRLMKLES------- 804 Query: 849 DMRLYYPEIQTKESKNNLSKNDKL-------FVEKIKCLNLDEMSPLTALKTLYAVK 898 + K + + ++ D L V+ ++ L+ DE++P AL LY +K Sbjct: 805 -------NAEQKSTHGDGAQLDLLALSAEHPAVQILRELDPDELTPRQALTKLYELK 854 >gi|260767192|ref|ZP_05876134.1| DNA mismatch repair protein MutS [Vibrio furnissii CIP 102972] gi|260617800|gb|EEX42977.1| DNA mismatch repair protein MutS [Vibrio furnissii CIP 102972] Length = 853 Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust. Identities = 308/894 (34%), Positives = 494/894 (55%), Gaps = 66/894 (7%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 + TPMM+QY+++K+ NP+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IP Sbjct: 5 QKHTPMMQQYLKLKAENPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIP 64 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+T++ Sbjct: 65 MAGVPFHAVEGYLAKLVQLGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTVTDE 119 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSE 201 LLS N + A+ + A +DI++G F++ + + + +++ R PRE++F E Sbjct: 120 ALLSERVDNLIAAIYHHDGRFGYATLDITSGRFQLCEPESEEAMAAELQRTSPRELLFPE 179 Query: 202 KELSHAEYKSLFETLGNVAVAQ-----PNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 FE + +A + P F+ ++ ++ + + FG +++ Sbjct: 180 D----------FEPVQLMASRKGNRRRPVWEFELDTAKQQLNQQFGTRDLVGFGVEQAKL 229 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA I Y+K TQ P I + ++ +D+A R NLE+ + L+G + +L Sbjct: 230 GLCAAGCLIQYVKDTQRTALPHIRSLTFDRQDQSVILDAATRRNLELTQNLAGGTDNTLA 289 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 + +D+ T G R+ + P+ +N RLD+I Q+ L + +LK D+ Sbjct: 290 EVLDHCATPMGSRMLKRWLHQPMRGLDTLNQRLDAIGELKQH-ALFAELHPVLKQIGDIE 348 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEK 433 R L+RL + P+D+A +R ++ + ++ LP +LR + + L + LE+ Sbjct: 349 RILARLALRSARPRDLARLRHALQQLPELADVLSSLTLPYLGQLRDDAQPMDNLCELLEQ 408 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + ++ P RDGG + DG +A LDE R L + + + L+ E I LK+ Sbjct: 409 AIK----ENPPVVIRDGGVIADGYNAELDEWRDLANGATEYLDKLEADERERHGIDTLKV 464 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N G++I+V+ + ++ ++ RQT+ N R+ EL + E+++ N+ + Sbjct: 465 GYNAVHGFYIQVSRGQSHLVPP------HYVRRQTLKNAERYIIPELKEHEDKVLNSKSK 518 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E + +E L + ++ E + N + ++ ID+ LA A+ +YCRP + + Sbjct: 519 ALALEKQLWEALFDQLLPHLEQMQNLASALSQIDVLQNLAERAESLDYCRPTLSDEPGIR 578 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 ++ GRHP+VE+ + S+PFIAN +L+ K+ ++TGPNMGGKST++RQ ALI Sbjct: 579 IQAGRHPVVEQVM----SEPFIANPIELNPQR-----KMLIITGPNMGGKSTYMRQTALI 629 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 ++A +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT +S V Sbjct: 630 ALLAHIGSYVPAEAAQIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATERSLV 689 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA+ E+L + L ATH+ ELT+L +L N L Sbjct: 690 LMDEIGRGTSTYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNALPHLANVHLDAV 749 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 + + I F+H V G A SYG+ V LAG+P VI A L E+L Sbjct: 750 EHGDSIAFMHAVQEGAASKSYGLAVAGLAGVPKAVIKNARTKLTQLEQL----------- 798 Query: 854 YPEIQTKESKNN---LSKNDKLFVEKIKC------LNLDEMSPLTALKTLYAVK 898 +Q SK N ++ L E + ++ D+++P AL+ LY +K Sbjct: 799 --SLQQPSSKPNTVDIANQLSLIPEPSEVEQTLAEIDPDDLTPRQALEALYRLK 850 >gi|90580347|ref|ZP_01236154.1| DNA mismatch repair protein [Vibrio angustum S14] gi|90438649|gb|EAS63833.1| DNA mismatch repair protein [Vibrio angustum S14] Length = 859 Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust. Identities = 319/900 (35%), Positives = 490/900 (54%), Gaps = 66/900 (7%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 + L+ TPMM+Q++ IK+ NPD L+FYRMGDFYE+FFDDA AS+ L I+LTKRG G+ Sbjct: 4 KGLEKHTPMMQQFLRIKAENPDILLFYRMGDFYEMFFDDAKRASQLLDISLTKRGSTNGE 63 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H Y+ KL++ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 64 PIPMAGVPYHAVEGYLAKLVQQGVSVAICEQIGDPATSK-----GPVERKVVRIVTPGTV 118 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSN-HDRLISDIMRIDPREII 198 +++ LL+ N + A+ ++ A +DI++G F ++ N + + +++ R P E++ Sbjct: 119 SDEALLNERRDNLIAAIYTANNKFGYATLDITSGRFMLTEPNSEEEMQAELQRTSPAELL 178 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 + E Y L E +P F+ + ++ + + FG +++ Sbjct: 179 YPED----FTYLHLVEPFKG-KRRRPIWEFELDTARQQLTLQFGTRDLIGFGVENAELGL 233 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 +AA + Y+K TQ P I + + +D+A R NLE+ + L+G + +L Sbjct: 234 SAAGCLMQYVKDTQRTALPHIRAITLDTKDHAVILDAATRRNLELTQNLAGGYDNTLAAV 293 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D + T G RL + P+ D ++N RLD+I F + + ++ + +L+ D+ R Sbjct: 294 LDQTATPMGSRLLKRWLHQPIRDQKQLNGRLDAIEAFKNSGMFVD-VSGVLRHMGDLERI 352 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS------- 430 L+RL + P+D+A +R ++ LPE E L ++PQ+ Sbjct: 353 LARLALRSARPRDLARMRTAMQY------------LPE----LAELLAEIPQTRINDLAT 396 Query: 431 -------LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 L + L + ++ P RDGG L G +A LDE R L D + + + L+ Sbjct: 397 HAAPMDELCELLEHAIIENPPVIIRDGGVLAPGYNAELDEWRDLADGATKFLEELEASER 456 Query: 484 EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDL 543 E I +LK+ N G+FI+V+ + ++ ++ RQT+ N R+ EL + Sbjct: 457 ERHDIDSLKVGFNQVHGFFIQVSRGQSHLVPS------HYVRRQTLKNAERYIIPELKEH 510 Query: 544 ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCR 603 E+++ N+ + AL +E + +E L + ++ E L NA+ ++ +D+ LA A NYCR Sbjct: 511 EDKVLNSKSKALALEKKLWEELFDKLLPHLEQLQNAASALSELDVLTNLAERADSLNYCR 570 Query: 604 PIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 P + T + GRHP+VE L S+PFIAN L D+ ++ ++TGPNMGGK Sbjct: 571 PELMTETGIEITAGRHPVVEHVL----SEPFIANPISLH--QDR---RMLIITGPNMGGK 621 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 ST++RQ ALI +MA +GS+VPA IG +D++F+R+G++D+LASGRSTFMVEM ETA+I Sbjct: 622 STYMRQTALIALMAHVGSFVPAEAVKIGPLDRIFTRIGASDDLASGRSTFMVEMTETANI 681 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLK 783 L+ AT QS V++DEIGRGT+T DGLS+AWA+ E+L + L ATH+ ELT+L L Sbjct: 682 LHNATKQSLVLMDEIGRGTSTYDGLSLAWASAEWLADKISAMTLFATHYFELTELPSLLT 741 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY 843 N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E Sbjct: 742 GLANVHLDAVEHGDEIAFMHAVQEGAASKSYGLAVASLAGVPKAVIKRAKIKLQQLEASG 801 Query: 844 HHNQKDMRLYYPEIQT----KESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 H L EI T +E + +L E + +N DE++P AL LY +KA Sbjct: 802 HQQA----LQPNEITTGAPKEEHQLSLIPEPSEVEEALANVNPDELTPRQALDELYRLKA 857 >gi|302386431|ref|YP_003822253.1| DNA mismatch repair protein MutS [Clostridium saccharolyticum WM1] gi|302197059|gb|ADL04630.1| DNA mismatch repair protein MutS [Clostridium saccharolyticum WM1] Length = 884 Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust. Identities = 306/819 (37%), Positives = 473/819 (57%), Gaps = 30/819 (3%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM Y+E K PD ++FYR+GDFYE+FFDDA+ S+ L ITLT + L + PMCG Sbjct: 5 SPMMTHYMETKKEYPDCILFYRLGDFYEMFFDDAVTVSKELEITLTGKECGLEERAPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H + Y+ +L++ G+++AI EQ+E P R K LV+R V+R+VTPGT+T Q L Sbjct: 65 VPYHAVDTYLNRLVQKGYKVAIAEQMEDP-----RLAKGLVKREVIRVVTPGTITSAQAL 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISD-IMRIDPREIIFSEK-E 203 + +NYLM + I + IA DISTG F ++ +R ++D I + P EII +E Sbjct: 120 DESKNNYLMGIVYIGETFGIAVADISTGDFLVTEVESERELTDEINKFTPSEIICNEAFY 179 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 +S + + + V + + FF + + +++ + + G AA A Sbjct: 180 VSGVDIEEIKNRHHAVISSLDHHFFSDEVCRKILKEHFKVGALAGLGLEDYDNGVIAAGA 239 Query: 264 I-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYS 321 + Y+ +TQ + I + ID++ R NLE+L TL +++ SLL +D + Sbjct: 240 VMEYMYETQKSSLSHITTITPYSTGQYMIIDTSTRRNLELLETLREKQKRGSLLWVLDRT 299 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G R+ I PL +I R ++I + I I + L D+ R + R+ Sbjct: 300 KTAMGARMLRTYIEQPLIHKPEITKRQNAIEELNMSFISREEICEYLNPIYDLERLIGRI 359 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 P+D+ + + +I NL +D+ ++L G ++ L + + + + + Sbjct: 360 SYKTANPRDLIAFKSSLEMLPHIKNLLKEFSSDMLKDLWGELDPL----EDVRELIGRAI 415 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 DD P RDGG +RDG D+ RS + + K +A L+ + E+T IKNLK+K N Sbjct: 416 IDDPPVTLRDGGIIRDGFHEEADKLRSAKTEGKNWLADLESQEKEKTGIKNLKVKFNKVF 475 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+ EVT+S KDL D FI +QT++N R+TT +L +LEN I A + +E Sbjct: 476 GYYFEVTNSF-----KDL-VPDYFIRKQTLANAERYTTDQLKELENVILGAEDKLFSLEY 529 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 F + +++ +Q + ++ IA ID+ +L+ +A NY +P I+ +K+GRH Sbjct: 530 SLFCQVRDSVADQVLRIQKTARAIAGIDVLTSLSSVATRNNYVKPQINEKGLIDIKNGRH 589 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VEK ++ F++ND L D ++ ++TGPNM GKST++RQ ALIV++AQ+ Sbjct: 590 PVVEKMMRDDL---FVSNDTYL----DNGKNRVSIITGPNMAGKSTYMRQTALIVLLAQI 642 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPA A+IGI D++F+RVG++D+LASG+STFMVEM E A+IL AT S ++LDEIG Sbjct: 643 GSFVPAEEANIGICDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATKNSLIVLDEIG 702 Query: 740 RGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 RGT+T DGLSIAWA +E++ + L ATH+HELT+L ++ +N + V + + Sbjct: 703 RGTSTFDGLSIAWAVVEHISNPKILGAKTLFATHYHELTELEGTMSGVNNYCIAVKEQGD 762 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 I+FL K+I G AD SYG+QV KLAG+P++VI RA ++L Sbjct: 763 DIVFLRKIIKGGADKSYGVQVAKLAGVPDSVIVRAKELL 801 >gi|145639468|ref|ZP_01795073.1| DNA mismatch repair protein [Haemophilus influenzae PittII] gi|145271515|gb|EDK11427.1| DNA mismatch repair protein [Haemophilus influenzae PittII] Length = 861 Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust. Identities = 316/889 (35%), Positives = 497/889 (55%), Gaps = 44/889 (4%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 EEN + TPMM+QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG+ G Sbjct: 4 EENFQQHTPMMQQYLKLKAENPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGQSAG 63 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM G+P H Y+ KL+++G +AICEQI P +K V R +VR+VTPGT Sbjct: 64 QPIPMAGMPYHAVEGYLAKLVQLGESVAICEQIGDP-----ATSKGPVERQIVRIVTPGT 118 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N + AV + + ++ +A +D+++G F++ ++ + L +++ RI P E+ Sbjct: 119 VSDEALLPERQDNLIAAVYQEKEKFGLATLDMTSGRFQLCEPADKETLRAELQRIVPVEL 178 Query: 198 IFSEK--ELSHAEY-KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 ++ E+ E++ E+ K L +P F+ S + + + + + FG Sbjct: 179 LYCEEFNEMAAIEHCKGLRR--------RPIWEFELSTAITLLNRQFGTKDLRAFG---- 226 Query: 255 VEKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS 309 VEK+ AA + Y K+TQ P I Q + +D+A R NLE+ + LSG Sbjct: 227 VEKSPLGLSAAGCLLQYAKETQRTALPHIQSISLIQNQDCIQLDAATRRNLELTQNLSGG 286 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 E +L +D +T G RL I P+ D K+ R SI + N L++ +Q L+ Sbjct: 287 TENTLASVLDKCVTPMGSRLLKRWIHQPIRDVEKLKQRQQSIAEIL-NFDLVDELQPYLQ 345 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 D+ R L+R+ + P+D+ +R + I +L ++ P L ++ + Sbjct: 346 LVGDMERILARVALRSARPRDLTRLRTALEQ-IPVLRTIVQQKTPPFLTALFSQIADFSE 404 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 + L L + P RDGG + +G A LDE R L D + + + +L+ + E T I Sbjct: 405 QYD-LLQRALIETPPLLIRDGGVIAEGYHAELDEWRMLSDGATQYLENLEKRERESTGID 463 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LKI N GY+I+++ A ++ ++ RQT+ N R+ EL + E+++ Sbjct: 464 TLKIGFNAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKEYEDKVLK 517 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 + +AL +E + ++ L + ++ SL AS ++ +D+ + LA A NY P + Sbjct: 518 SKGAALALEKQLYDELFDLLLPHLGSLQLASLALSELDVLVNLAERADTLNYVMPTFCDE 577 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 + +++GRHP+VE+ LK PFIAN +L+ ++ L ++TGPNMGGKST++RQ Sbjct: 578 VSVKIENGRHPVVEQVLK----DPFIANPVELN-----HNRHLLVITGPNMGGKSTYMRQ 628 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI ++A +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT Sbjct: 629 TALITLLAYIGSFVPADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATE 688 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 QS V++DEIGRGT+T DGLS+AWA E+L + R L ATH+ ELT L + L+ N Sbjct: 689 QSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLEGIANIH 748 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 L + N I F+H V G A SYG+ V LAG+P +VI A L EK ++ + Sbjct: 749 LDALEHNNSIAFMHAVQDGAASKSYGLAVAALAGVPQSVIKLAKQKLTQLEKNSSYSAEQ 808 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E + + + E I+ L+ D++SP AL LY +K Sbjct: 809 QIQALREANHNQGELLFEQETDALREAIEKLDPDDLSPKQALAYLYQLK 857 >gi|255306973|ref|ZP_05351144.1| DNA mismatch repair protein [Clostridium difficile ATCC 43255] Length = 947 Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust. Identities = 304/840 (36%), Positives = 486/840 (57%), Gaps = 58/840 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+E+K+ D ++F+R+GDFYE+FF+DAL+AS+ L I LT + L + PMCG Sbjct: 9 TPMMKQYLEVKNRYKDCILFFRLGDFYEMFFEDALVASKALEIALTGKACGLEERAPMCG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+AN YI KL++ G+++AI EQ+E P AK +VRR V+R++TPGT+ + LL Sbjct: 69 VPFHSANSYISKLVENGYKVAIGEQMEDPSTAK-----GIVRREVIRVITPGTVLDGNLL 123 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 +NYL+++ + T + ++DISTG + N D++I +I +I P EII ++ + Sbjct: 124 ENKKNNYLLSLYKDGTNIGLTYVDISTGETNATCLNEDKVIEEIAKIHPTEIIINDLDF- 182 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE--------- 256 E L ++A N++ + S S+ +Y +I + + F V Sbjct: 183 -------IEKLRDIATVS-NIYINESFSD----NYLDINILKEY--FPDVYLQKLKFDDK 228 Query: 257 ---KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ- 312 K++ + ++YI TQ I + + +D R+NLE+ +T+ G++++ Sbjct: 229 GLIKSSLSILLNYIYNTQKQITSNINNINIYNSSEYMVLDMFTRTNLELTQTIRGNKKKG 288 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 SLL +D + T GGRL + + PL + +KI RLD I + IL + ILK+ Sbjct: 289 SLLHVLDKTSTAMGGRLLRKYVEEPLINKSKIENRLDVIEEIKDDFILREDLNDILKNIY 348 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGI------RSGINILNLFLKNDLPEELRGAVEKLKK 426 D+ R ++ R PK++ +++ I + IN+ N + L+ V ++ K Sbjct: 349 DIERICGKIAFERVTPKELIHLKNSIEKLPNLKDTINLSNAKI-------LKEYVSEMDK 401 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 L ++L + T K DG ++ L E R + ++ ++ + E+T Sbjct: 402 LDDIYNLIDEAILEEPTITIK-DGNIIKSDFSDELKELREISKNGAFLVKEIENREREKT 460 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 +K+LKI N GY+IE+T ++ K D + +I +QT+SN R+ T EL ++E + Sbjct: 461 GVKSLKIGFNKVFGYYIEITKANFKQAKLD----ETYIRKQTLSNAERYITPELKEIEEK 516 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 I +A +E E F + + I + + + ++ IA ID+ ++LA +A NY +P I Sbjct: 517 ILHAEEKIKSLEYEIFVEIRDTIYKNIDRIQKVAKTIANIDVFVSLATVAHINNYVKPAI 576 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 + + +++GRHP+VE + +++ F+ ND L ++ + ++TGPNM GKST+ Sbjct: 577 NENNKLDIRNGRHPVVENIVGEEN---FVPNDTYL----NRGENIINIITGPNMSGKSTY 629 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ A+I +MA +GS+VPA A I I+D++F+RVG++D+L+ G+STFMVEM E + IL Sbjct: 630 MRQTAIIALMAHIGSFVPAESADIPILDRIFTRVGASDDLSQGQSTFMVEMNEVSLILKN 689 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT +S VILDEIGRGT+T DG+S+AW+ +EY+ + RC+ L ATH+HELTDL + K Sbjct: 690 ATERSLVILDEIGRGTSTYDGISLAWSIVEYIQKNIRCKTLFATHYHELTDLEEEFKEVK 749 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN 846 N ++ V + EGIIFL K+IP AD SYGI V KLA LP+ VI RA ILK EK + +N Sbjct: 750 NYSIAVKEDGEGIIFLRKIIPQGADKSYGIYVAKLAKLPDEVIERAKYILKDLEKNHVYN 809 >gi|254975573|ref|ZP_05272045.1| DNA mismatch repair protein [Clostridium difficile QCD-66c26] gi|255092961|ref|ZP_05322439.1| DNA mismatch repair protein [Clostridium difficile CIP 107932] gi|255314702|ref|ZP_05356285.1| DNA mismatch repair protein [Clostridium difficile QCD-76w55] gi|255517377|ref|ZP_05385053.1| DNA mismatch repair protein [Clostridium difficile QCD-97b34] gi|255650483|ref|ZP_05397385.1| DNA mismatch repair protein [Clostridium difficile QCD-37x79] gi|260683593|ref|YP_003214878.1| DNA mismatch repair protein [Clostridium difficile CD196] gi|260687253|ref|YP_003218387.1| DNA mismatch repair protein [Clostridium difficile R20291] gi|260209756|emb|CBA63548.1| DNA mismatch repair protein [Clostridium difficile CD196] gi|260213270|emb|CBE04805.1| DNA mismatch repair protein [Clostridium difficile R20291] gi|328887644|emb|CAJ68852.2| DNA mismatch repair protein MutS [Clostridium difficile] Length = 947 Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust. Identities = 304/840 (36%), Positives = 486/840 (57%), Gaps = 58/840 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+E+K+ D ++F+R+GDFYE+FF+DAL+AS+ L I LT + L + PMCG Sbjct: 9 TPMMKQYLEVKNRYKDCILFFRLGDFYEMFFEDALVASKALEIALTGKACGLEERAPMCG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+AN YI KL++ G+++AI EQ+E P AK +VRR V+R++TPGT+ + LL Sbjct: 69 VPFHSANSYISKLVENGYKVAIGEQMEDPSTAK-----GIVRREVIRVITPGTVLDGNLL 123 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 +NYL+++ + T + ++DISTG + N D++I +I +I P EII ++ + Sbjct: 124 ENKKNNYLLSLYKDGTNIGLTYVDISTGETNATCLNEDKVIEEIAKIHPTEIIINDLDF- 182 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE--------- 256 E L ++A N++ + S S+ +Y +I + + F V Sbjct: 183 -------IEKLRDIATVS-NIYINESFSD----NYLDINILKEY--FPDVYLQKLKFDDK 228 Query: 257 ---KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ- 312 K++ + ++YI TQ I + + +D R+NLE+ +T+ G++++ Sbjct: 229 GLIKSSLSILLNYIYNTQKQITSNINNINIYNSSEYMVLDMFTRTNLELTQTIRGNKKKG 288 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 SLL +D + T GGRL + + PL + +KI RLD I + IL + ILK+ Sbjct: 289 SLLHVLDKTSTAMGGRLLRKYVEEPLINKSKIENRLDVIEEIKDDFILREDLNDILKNIY 348 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGI------RSGINILNLFLKNDLPEELRGAVEKLKK 426 D+ R ++ R PK++ +++ I + IN+ N + L+ V ++ K Sbjct: 349 DIERICGKIAFERVTPKELIHLKNSIEKLPNLKDTINLSNAKI-------LKEYVSEMDK 401 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 L ++L + T K DG ++ L E R + ++ ++ + E+T Sbjct: 402 LDDIYNLIDEAILEEPTITIK-DGNIIKSDFSDELKELREISKNGAFLVKEIENREREKT 460 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 +K+LKI N GY+IE+T ++ K D + +I +QT+SN R+ T EL ++E + Sbjct: 461 GVKSLKIGFNKVFGYYIEITKANFKQAKLD----ETYIRKQTLSNAERYITPELKEIEEK 516 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 I +A +E E F + + I + + + ++ IA ID+ ++LA +A NY +P I Sbjct: 517 ILHAEEKIKSLEYEIFVEIRDTIYKNIDRIQKVAKTIANIDVFVSLATVAHINNYVKPAI 576 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 + + +++GRHP+VE + +++ F+ ND L ++ + ++TGPNM GKST+ Sbjct: 577 NENNKLDIRNGRHPVVENIVGEEN---FVPNDTYL----NRGENIINIITGPNMSGKSTY 629 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ A+I +MA +GS+VPA A I I+D++F+RVG++D+L+ G+STFMVEM E + IL Sbjct: 630 MRQTAIIALMAHIGSFVPAESADIPILDRIFTRVGASDDLSQGQSTFMVEMNEVSLILKN 689 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT +S VILDEIGRGT+T DG+S+AW+ +EY+ + RC+ L ATH+HELTDL + K Sbjct: 690 ATERSLVILDEIGRGTSTYDGISLAWSIVEYIQKNIRCKTLFATHYHELTDLEEEFKEVK 749 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN 846 N ++ V + EGIIFL K+IP AD SYGI V KLA LP+ VI RA ILK EK + +N Sbjct: 750 NYSIAVKEDGEGIIFLRKIIPQGADKSYGIYVAKLAKLPDEVIERAKYILKDLEKNHVYN 809 >gi|24374941|ref|NP_718984.1| DNA mismatch repair protein [Shewanella oneidensis MR-1] gi|44888216|sp|Q8EBR9|MUTS_SHEON RecName: Full=DNA mismatch repair protein mutS gi|24349656|gb|AAN56428.1|AE015779_5 DNA mismatch repair protein MutS [Shewanella oneidensis MR-1] Length = 856 Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust. Identities = 315/886 (35%), Positives = 482/886 (54%), Gaps = 46/886 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 ++L+ TPMMRQY+ +K+ + D L+FYRMGDFYELF+DDA AS LGI+LT RGK G Sbjct: 7 DDLEKHTPMMRQYLSMKAEHHDMLLFYRMGDFYELFYDDAKRASELLGISLTARGKSGGD 66 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H Y+ KL++IG +AICEQI P +K V R VVR+VTPGTL Sbjct: 67 PIPMAGIPYHAVEGYLAKLVQIGQSVAICEQIGDPATSK-----GPVERKVVRIVTPGTL 121 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREII 198 T++ LL N L AV + + + A +D+S+G F I+ + L +++ R +P EI+ Sbjct: 122 TDEALLQERQDNLLAAVYQGKVGFGYATLDVSSGRFVIAELETKESLEAELQRTNPVEIL 181 Query: 199 FSEK-----ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SF 252 +SE L H + K +P FD+ S + + + FG + Sbjct: 182 YSEDFGALDLLHHFKGKR----------RRPEWEFDYDTSIKLLLAQFGTKDLHGFGITD 231 Query: 253 SQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 +++ AA + Y+K TQ P I R + T+ +D+A R NLE+ + LSG R+ Sbjct: 232 ARLSLQAAGCLMQYVKDTQRTALPHINAITRFNQTDTIVLDAATRRNLELTQNLSGGRDN 291 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 +L +D + T G R+ I PL D I R ++N ++ + + + LK+ Sbjct: 292 TLAAVLDNTATAMGSRMLQRWIHQPLRDHALILARQTAVNELLETAVH-ESLHEQLKALG 350 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE 432 D+ R ++RL + P+D A +R + + + P ++ + L + PQ + Sbjct: 351 DIERIMARLALRTARPRDFARLRQALSLLPQLQLSLSQLSAPHTVKLG-QLLGEFPQE-Q 408 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 + L + D+ P RDGG +R+G +A LDE R L + + + L+ + E T I LK Sbjct: 409 QLLEHAIVDNPPMLIRDGGVIREGYNAELDEWRGLSEGASDYLVQLEAREKERTGIATLK 468 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 + +N GY+IEV+ ++ + + + RQT+ N+ R+ T EL + E ++ ++ Sbjct: 469 VGYNRVHGYYIEVSRLQSNQVPLN------YQRRQTLKNMERYITPELKEYEEKVLSSQG 522 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 AL +E + ++ L + I+ + L + ++ A +D+ A A+ Y P + + Sbjct: 523 KALALEKQLWDELFDLILPKLHELQDFARAAAELDVLSNFAERAETLGYTSPELSSEIGV 582 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 ++ GRHP+VE+ S PFIAN L N ++ ++TGPNMGGKST++RQ AL Sbjct: 583 KIEAGRHPVVERV----SQTPFIANPVTL-----HNQRRMLIVTGPNMGGKSTYMRQVAL 633 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 I +MA +G +VPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT QS Sbjct: 634 ITLMAHIGCFVPAERATIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATAQSL 693 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 V++DEIGRGT+T DGLS+AW+ EYL + L ATH+ ELT L + + +N L Sbjct: 694 VLMDEIGRGTSTYDGLSLAWSAAEYLAQQVGAMTLFATHYFELTQLPELMSGVYNVHLDA 753 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 + + I F+H V G A SYG+QV LAG+P VI A L E H + Sbjct: 754 IEHEDTIAFMHAVQEGAASKSYGLQVAALAGVPARVIKAAKHKLHQLESRDHQVEGTKTP 813 Query: 853 YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + E N + V K+K +N D ++P AL LY +K Sbjct: 814 IQTLLALPEPVENPA------VSKLKAINPDNLTPKQALDLLYELK 853 >gi|120598087|ref|YP_962661.1| DNA mismatch repair protein MutS [Shewanella sp. W3-18-1] gi|146293842|ref|YP_001184266.1| DNA mismatch repair protein MutS [Shewanella putrefaciens CN-32] gi|166232137|sp|A4Y934|MUTS_SHEPC RecName: Full=DNA mismatch repair protein mutS gi|166232139|sp|A1RHG2|MUTS_SHESW RecName: Full=DNA mismatch repair protein mutS gi|120558180|gb|ABM24107.1| DNA mismatch repair protein MutS [Shewanella sp. W3-18-1] gi|145565532|gb|ABP76467.1| DNA mismatch repair protein MutS [Shewanella putrefaciens CN-32] Length = 856 Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust. Identities = 320/892 (35%), Positives = 486/892 (54%), Gaps = 58/892 (6%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 ++L+ TPMMRQY+ +K+ + D L+FYRMGDFYELF+DDA AS LGI+LT RGK G Sbjct: 7 DDLEKHTPMMRQYLTMKAEHHDMLLFYRMGDFYELFYDDAKRASELLGISLTARGKSGGD 66 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H Y+ KL++IG +AICEQI P AK V R VVR+VTPGTL Sbjct: 67 PIPMAGIPYHAVEGYLAKLVQIGQSVAICEQIGDPATAK-----GPVERKVVRIVTPGTL 121 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREII 198 T++ LL N L AV + + + A +D+S+G F I+ + L +++ R +P EI+ Sbjct: 122 TDEALLQERQDNLLAAVYQGKVGFGYATLDVSSGRFVIAELDTKESLEAELQRTNPVEIL 181 Query: 199 FSEK-----ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SF 252 +SE LSH + K +P FD+ S + + + FG S Sbjct: 182 YSEDFGELGLLSHFKGKR----------RRPEWEFDYDTSIKLLLAQFGTKDLHGFGISD 231 Query: 253 SQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 +++ AA + Y+K TQ P I R + ++ +D+A R NLE+ + L+G R+ Sbjct: 232 ARLSLQAAGCLMQYVKDTQRTTLPHINAIIRFNQADSIVLDAATRRNLELTQNLAGGRDN 291 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 +L +D + T G R+ I PL D +I R ++N ++ P+ + LK+ Sbjct: 292 TLAAVLDNTATAMGSRMLQRWIHQPLRDPNQIIARQTAVNELLKTGTH-EPLHEQLKALG 350 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGI------RSGINILNLFLKNDLPEELRGAVEKLKK 426 D+ R ++RL + P+D A +R + + +++LN P ++ + L + Sbjct: 351 DIERIMARLALRTARPRDFARLRQALSLLPELQQSLSVLNA------PHTVK-LCQYLGE 403 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 P+ + L + D+ P RDGG +R+G + LDE R L + + + L+ + E T Sbjct: 404 FPEE-QALLERAIVDNPPMLIRDGGVIREGYNNELDEWRGLSEGASDYLVQLEAREKERT 462 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 I LK+ +N GY+IEV+ +S + + + RQT+ N+ R+ T EL + E + Sbjct: 463 GINTLKVGYNRVHGYYIEVSRLQSSQVPLN------YQRRQTLKNMERYITPELKEYEEK 516 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 + ++ AL +E + +E L + I+ + L ++ A +D+ A A+ Y P + Sbjct: 517 VLSSQGKALALEKQLWEQLFDLILPKLHELQAFARAAAELDVLSNFAERAETLGYICPQL 576 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 + GRHP+VE+ S PFIAN L N ++ ++TGPNMGGKST+ Sbjct: 577 SQDIGVQIDAGRHPVVERV----SQTPFIANPVTL-----HNQRRMLIVTGPNMGGKSTY 627 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ ALI +MA +G +VPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ Sbjct: 628 MRQVALITLMAHIGCFVPAERAVIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILHN 687 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT QS V++DEIGRGT+T DGLS+AW+ EYL + L ATH+ ELT L + + Sbjct: 688 ATAQSLVLMDEIGRGTSTYDGLSLAWSAAEYLAQQIGAMTLFATHYFELTQLPDLMAGVY 747 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN 846 N L + + I F+H V G A SYG+QV LAG+P VI A L+ E H Sbjct: 748 NVHLDAIEHEDTIAFMHAVQEGAASKSYGLQVAALAGVPAKVIKAAKHKLQQLESRDHQL 807 Query: 847 QKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + IQT + ++N L K++ +N D ++P AL LY +K Sbjct: 808 EGTKT----PIQTLLALPEPAENPAL--TKLQAINPDNLTPKQALDLLYELK 853 >gi|226945906|ref|YP_002800979.1| DNA mismatch repair protein MutS [Azotobacter vinelandii DJ] gi|259511162|sp|C1DSR1|MUTS_AZOVD RecName: Full=DNA mismatch repair protein mutS gi|226720833|gb|ACO80004.1| DNA mismatch repair protein MutS [Azotobacter vinelandii DJ] Length = 855 Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust. Identities = 317/884 (35%), Positives = 486/884 (54%), Gaps = 38/884 (4%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E+L TPMM+QY ++K +PD L+FYRMGDFYELF++DA A++ L ITLT RG+ GK Sbjct: 2 ESLSQHTPMMQQYWKLKREHPDQLMFYRMGDFYELFYEDAKKAAKLLDITLTARGQSAGK 61 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H+ Y+ KL+K+G +AICEQI P K V R VVR++TPGT+ Sbjct: 62 SIPMAGIPFHSVEGYLAKLVKLGESVAICEQIGDPAT-----TKGPVERQVVRIITPGTV 116 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L AV + +A +DI++G F + + L++++ R++P E++ Sbjct: 117 SDEALLDERRDNLLAAVVGDERLFGLAILDITSGRFNVQEIQGWENLLAELERLNPAELL 176 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEK 257 + + + L + G A + FD + + + + FG + Sbjct: 177 YPDDWPAGL---PLEKRRGAHRRAPWDFDFDSAYKS--LCQQFATQDLKGFGCDGLGLAI 231 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA ++Y ++TQ P + E + T+ +D A+R NLE+ LSG R+ +L Sbjct: 232 GAAGCLLAYARETQRTALPHLRGLRHERLDDTVILDGASRRNLELDVNLSGGRDNTLQSV 291 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 ID T G RL + PL D + R D++ +Q+ +Q LK DV R Sbjct: 292 IDRCQTAMGSRLLGRWLNRPLRDRAVLEARQDTVACLLQD-YRFESLQPQLKEIGDVERI 350 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 L+R+ + P+D+A +RD + + + + P L+ ++ P+ L + L Sbjct: 351 LARIGLRNARPRDLARLRDALAALPQLQTALSPLEAPH-LQALAGNIRTYPE-LAELLRR 408 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + D+ P RDGG L+ G DA LDE SL + + + + L+ + T + NLK+ +N Sbjct: 409 AIIDNPPAVIRDGGVLKQGYDAELDELLSLSENAGQFLMDLEAREKARTGLPNLKVGYNR 468 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IE+ A D +I RQT+ RF T EL E++ +A + AL Sbjct: 469 IHGYYIELPRVQAEQAPAD------YIRRQTLKGAERFITPELKAFEDKALSAKSRALAR 522 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E +E L +I Q L + +A +D+ LA A ++ RP ++ G Sbjct: 523 EKALYEELLEILIAQLAPLQETATALAELDVLANLAERALNLDFNRPRFVEEPCLRIRQG 582 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ L PF+AND +L D N+ ++ ++TGPNMGGKST++RQ ALIV++A Sbjct: 583 RHPVVEQVL----DTPFVANDLEL----DDNT-RMLIITGPNMGGKSTYMRQTALIVLLA 633 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GS+VPA + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ A+ +S V++DE Sbjct: 634 HIGSFVPAQSCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNASERSLVLMDE 693 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 +GRGT+T DGLS+AWA E+L R L ATH+ ELT L++S N L ++ NE Sbjct: 694 VGRGTSTFDGLSLAWAAAEHLAGL-RAWTLFATHYFELTVLAESQPVVANVHLSATEHNE 752 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY---Y 854 I+FLH V+PG A SYG+ V +LAG+P VISRA + L E ++ +R Sbjct: 753 RIVFLHHVLPGPASQSYGLAVAQLAGVPGPVISRAREHLARLEATSLPHEAPLREAGKPQ 812 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P IQ+ + + +E++ L D++SP AL+ LY+ K Sbjct: 813 PPIQS----DLFASLPHPLMEELARLKPDDLSPRQALELLYSWK 852 >gi|89075067|ref|ZP_01161508.1| DNA mismatch repair protein [Photobacterium sp. SKA34] gi|89049154|gb|EAR54719.1| DNA mismatch repair protein [Photobacterium sp. SKA34] Length = 859 Score = 526 bits (1354), Expect = e-146, Method: Compositional matrix adjust. Identities = 313/889 (35%), Positives = 490/889 (55%), Gaps = 44/889 (4%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 + L+ TPMM+Q++ IK+ NPD L+FYRMGDFYE+FFDDA AS+ L I+LTKRG G+ Sbjct: 4 KGLEKHTPMMQQFLRIKAENPDILLFYRMGDFYEMFFDDAKRASQLLDISLTKRGSTNGE 63 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H Y+ KL++ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 64 PIPMAGVPYHAVEGYLAKLVQQGVSVAICEQIGDPATSK-----GPVERKVVRIVTPGTV 118 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSN-HDRLISDIMRIDPREII 198 +++ LL+ N + A+ ++ A +DI++G F ++ N + + +++ R P E++ Sbjct: 119 SDEALLNERRDNLIAAIYTENDKFGYATLDITSGRFMLTEPNSEEEMQAELQRTSPAELL 178 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 + E Y L E +P F+ + ++ + + FG +++ Sbjct: 179 YPED----FTYLHLLEPFKG-KRRRPIWEFELDTARQQLTLQFGTRDLIGFGVENAELGL 233 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA + Y+K TQ P I + + +D+A R NLE+ + L+G + +L Sbjct: 234 CAAGCLMQYVKDTQRTALPHIRAITLDTKDHAVILDAATRRNLELTQNLAGGYDNTLASV 293 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D + T G RL + P+ D ++N RLD+I F + + ++ + +L+ D+ R Sbjct: 294 LDQTATPMGSRLLKRWLHQPIRDQKQLNGRLDAIEAFKNSGMFVD-VSGVLRHMGDLERI 352 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE----ELRGAVEKLKKLPQSLEK 433 L+RL + P+D+A +R ++ + L + ++P+ +L + L + LE Sbjct: 353 LARLALRSARPRDLARMRTAMQYLPELAELLV--EIPQVRINDLATHAAPMDDLCELLEH 410 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + ++ P RDGG L G +A LDE R L D + + + L+ E I +LK+ Sbjct: 411 AII----ENPPVIIRDGGVLAPGYNAELDEWRDLADGATKFLEELEASEREHHDIDSLKV 466 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N G+FI+V+ + ++ ++ RQT+ N R+ EL + E+++ N+ + Sbjct: 467 GFNQVHGFFIQVSRGQSHLVPS------HYVRRQTLKNAERYIIPELKEHEDKVLNSKSK 520 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E + +E L + ++ E L N + ++ +D+ LA A NYCRP + T Sbjct: 521 ALALEKKLWEELFDKLLPHLEQLQNTASALSELDVLTNLAERADSLNYCRPELMTETGIE 580 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + GRHP+VE L S+PFIAN L S ++ ++TGPNMGGKST++RQ ALI Sbjct: 581 ITAGRHPVVEHVL----SEPFIANPISL-----HQSRRMLIITGPNMGGKSTYMRQTALI 631 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +GS+VPA IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT QS V Sbjct: 632 ALMAHVGSFVPAEAVKIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKQSLV 691 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA+ E+L + L ATH+ ELT+L L N L Sbjct: 692 LMDEIGRGTSTYDGLSLAWASAEWLADKISAMTLFATHYFELTELPSLLTGLANVHLDAV 751 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ---KDM 850 + + I F+H V G A SYG+ V LAG+P TVI RA L+ E H ++ Sbjct: 752 EHGDEIAFMHAVQEGAASKSYGLAVASLAGVPKTVIKRAKIKLQQLEASGHQQALQPNEI 811 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + P+ +E + +L E + +N DE++P AL LY +KA Sbjct: 812 TIGAPK---EEHQLSLIPEPSEVEEALANVNPDELTPRQALDELYRLKA 857 >gi|152978029|ref|YP_001343658.1| DNA mismatch repair protein [Actinobacillus succinogenes 130Z] gi|189030437|sp|A6VL76|MUTS_ACTSZ RecName: Full=DNA mismatch repair protein mutS gi|150839752|gb|ABR73723.1| DNA mismatch repair protein MutS [Actinobacillus succinogenes 130Z] Length = 858 Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust. Identities = 323/893 (36%), Positives = 491/893 (54%), Gaps = 55/893 (6%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 N + TPMM+QY+ IK+ NPD L+FYRMGDFYE+F+DDA A+ L I+LTKRG+ G+ Sbjct: 3 NFDAHTPMMKQYLTIKAENPDILLFYRMGDFYEMFYDDAKKAAALLDISLTKRGQSAGRP 62 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM GVP H Y+ KL+++G +AICEQI P +K V R +VR+VTPGT++ Sbjct: 63 IPMAGVPYHAVEGYLAKLVQLGESVAICEQIGDP-----AASKGPVERKIVRIVTPGTVS 117 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTS-NHDRLISDIMRIDPREIIF 199 ++ LL N L+AV + + + +A +D+S+G F+I+ + N + L +++ R+ P E+++ Sbjct: 118 DENLLPERQDNLLVAVYQEKDRFGLASLDMSSGRFQIAEAENAETLHAELQRLQPAELLY 177 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 SE +E + +T G +P F+ + + + + FG V Sbjct: 178 SE---DFSEMAIIEQTKG--LRRRPIWEFELGTAVQLLNRQFGTKDLKAFGVEKAVLGLC 232 Query: 260 AAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA + Y K+TQ P I T+ +D+A R NLE+ R LSG E +L + Sbjct: 233 AAGCLFQYAKETQRTALPHIKSISLVQNSDTVQLDAATRRNLELTRNLSGGTENTLASVL 292 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D +T G RL I P+ K+ R +I +Q+ LI+ +Q +L+ D+ R L Sbjct: 293 DKCVTPMGSRLLKRWIHQPIRKIQKLRQRQQTIAAILQDD-LIDELQPLLRQVGDMERIL 351 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEKLKKLPQSLEK--- 433 +R+ + P+D+ +R + LP+ ++ ++ L L Q + + Sbjct: 352 ARVALRTARPRDLTRLRTAL------------EQLPQLQQIIKTLQNLTALSQPMGEFAE 399 Query: 434 ---TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L + D P RDGG + G A LDE RSL D + + +A L+ + E T I Sbjct: 400 LCDLLQRAIIDSPPLLIRDGGVIAPGYHAELDEWRSLADGATQYLADLERRERESTGIDT 459 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LKI +N GY+I+++ A + ++ RQT+ N R+ EL E+++ A Sbjct: 460 LKIGYNAVHGYYIQISQGQAH------NAPMHYVRRQTLKNAERYIIPELKTYEDKVLKA 513 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 +AL +E + +E + + ++ +L +S +A +D+ LA A+ NY P Sbjct: 514 KGAALALEKQLYEEIFDQLLPHLAALQLSSMTLAELDVLTNLAERAETLNYVCPEFSPEI 573 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 +++GRHP+VE+ LK+ PFIAN C N + +L ++TGPNMGGKST++RQ Sbjct: 574 GVEIQNGRHPVVEQVLKE----PFIANPV---CLNPQR--RLLVITGPNMGGKSTYMRQT 624 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI +MA MG +VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT Sbjct: 625 ALITLMAYMGGFVPAERAVIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATAD 684 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V++DEIGRGT+T DGLS+AWA E+L + R L ATH+ ELT L + N L Sbjct: 685 SLVLIDEIGRGTSTYDGLSLAWACAEWLAKKLRSLTLFATHYFELTVLPEQFAGTANVHL 744 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ--- 847 + + I F+H V G A SYG+ V LAG+P VI A L EKL + Sbjct: 745 DALEHDNTIAFMHAVQDGAASKSYGLAVAALAGVPQQVIKLAKQKLAQLEKLSAQSADQK 804 Query: 848 -KDMR-LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +D+R L+ + + + + KN L E ++ L+ DE+SP AL LY +K Sbjct: 805 LQDLRTLHQMQGELALMEEDDGKNAAL--EMLEKLDPDELSPKQALAYLYQLK 855 >gi|315187243|gb|EFU21000.1| DNA mismatch repair protein MutS [Spirochaeta thermophila DSM 6578] Length = 867 Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust. Identities = 328/898 (36%), Positives = 488/898 (54%), Gaps = 67/898 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY E K + ++F+R+GDFYE+F DDA ASR LGITLT+R IPMCG Sbjct: 6 TPMMQQYWEFKKRYREEILFFRLGDFYEMFADDAKEASRILGITLTQR-----NGIPMCG 60 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H A +YI +L++ G +IAICEQ+E P K RG L RR V+ ++TPGT+T+++LL Sbjct: 61 IPFHAAQNYIARLLRAGKKIAICEQVEVP--EKGRG---LARREVIEVITPGTVTDEELL 115 Query: 146 SPTDSNYLMAVARIRTE-WAIAWIDISTGIFKIST---SNHDRLISDIMRIDPREIIFSE 201 +N+L+A A E +++ +++STG F T S + L ++ RI P E+I E Sbjct: 116 EKQKNNFLLAAAPAGKERVSLSCVELSTGEFLAGTAPGSFAEILARELARISPSELILPE 175 Query: 202 KELSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTA 259 + E + + + G + V + P +FD S R+ ++ + FG E Sbjct: 176 SAMEEPEIQKVLDAHGEIYVNRFPEWYFDPRTSFERLVRHFRSVNLKAFGLEEDSPELIT 235 Query: 260 AAAAISYIKKTQMVNKPTIG--YPEREDIQSTLFIDSAARSNLEILRTLS-GSREQSLLK 316 A + Y++ T P + +P RE + L +D NLE+++ + G +L + Sbjct: 236 AGPLLQYLEDTCHTLLPHVRSIHPYRE--EDALLLDETTIRNLELVKNIQDGGEHFTLYR 293 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 ++++ T G RL I PL I RL+++ ++ L+ ++K+ S D+ R Sbjct: 294 VLNHTTTPMGARLLRRWILYPLVAPADIEARLEAVEHLYRDQHLLQTLRKLFASMLDIER 353 Query: 377 SLSRLKIGRGEPKDIAVIRDGIR---------SGINILNLFLKNDLPEELRGAVEKLKKL 427 +R+ + + KD+ I I SGI + FL LP +L E L L Sbjct: 354 LATRVALDKAHAKDLLAIAGTIEAYEEAFALLSGIEAFSSFL---LPVDL---FETLSTL 407 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 SL L D+ T +G +R+G D +D R+LRD S+ I+ + E + Sbjct: 408 ADSL----LPALMDNPATSLNEGNIIREGYDPEVDRCRTLRDHSQEILDRYLQEERERSG 463 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 I +LK+K+N +GYF EVT ++A ++ FI RQT+ RFTT LI+LE+++ Sbjct: 464 ISSLKLKYNKVIGYFFEVTRANAHLVP------SYFIPRQTLVQTQRFTTERLIELESQL 517 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 A + +E + F L E L + +A ID +LA A Y RP++ Sbjct: 518 AEAEERLVELERKIFMDLRERTKTHLEGLLALGKSVAAIDCLQSLAYAATRYGYTRPVLT 577 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 VK+GRHP+VE L S F+ ND L P L ++TGPNM GKSTFL Sbjct: 578 TELVLDVKEGRHPVVEAHLPTGS---FVPNDLLLDPPRRT----LAVITGPNMAGKSTFL 630 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQNALIV+MAQMGS+VPA A IGI D+LF RVG++DN+A G STF+VEM ETA IL+ A Sbjct: 631 RQNALIVLMAQMGSFVPAKEAVIGIADRLFCRVGASDNIARGESTFLVEMNETAYILHHA 690 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 T +S +I+DE+GRGT T+DGLSIAWA +EYL E + R L ATHFHELT ++ N Sbjct: 691 TPRSVIIMDEVGRGTGTIDGLSIAWAVVEYLLERVKARTLFATHFHELTKITHPA--VFN 748 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ 847 ++ V + +GI+FL +V G A+ SYGI V +LAG+P V+ RA + E+ + Sbjct: 749 LSMAVREDRDGIVFLKRVRAGAAEKSYGIHVARLAGVPEAVVKRA----RAIEEALSRRE 804 Query: 848 KDMR-----LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAW 900 +D+ P +++ + L +L E++ +++ +PL AL A+ W Sbjct: 805 EDLTGTEGGPSIPPPDSRDEQPELFSPYELLAEELSHFDVERHTPLEALN---AIARW 859 >gi|319427216|gb|ADV55290.1| DNA mismatch repair protein MutS [Shewanella putrefaciens 200] Length = 856 Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust. Identities = 320/892 (35%), Positives = 486/892 (54%), Gaps = 58/892 (6%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 ++L+ TPMMRQY+ +K+ + D L+FYRMGDFYELF+DDA AS LGI+LT RGK G Sbjct: 7 DDLEKHTPMMRQYLTMKAEHHDMLLFYRMGDFYELFYDDAKRASELLGISLTARGKSGGD 66 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H Y+ KL++IG +AICEQI P AK V R VVR+VTPGTL Sbjct: 67 PIPMAGIPYHAVEGYLAKLVQIGQSVAICEQIGDPATAK-----GPVERKVVRIVTPGTL 121 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREII 198 T++ LL N L AV + + + A +D+S+G F I+ + L +++ R +P EI+ Sbjct: 122 TDEALLQERQDNLLAAVYQGKVGFGYATLDVSSGRFVIAELDTRESLEAELQRTNPVEIL 181 Query: 199 FSEK-----ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SF 252 +SE LSH + K +P FD+ S + + + FG S Sbjct: 182 YSEDFGELGLLSHFKGKR----------RRPEWEFDYDTSIKLLLAQFGTKDLHGFGISD 231 Query: 253 SQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 +++ AA + Y+K TQ P I R + ++ +D+A R NLE+ + L+G R+ Sbjct: 232 ARLSLQAAGCLMQYVKDTQRTALPHINAIIRFNQADSIVLDAATRRNLELTQNLAGGRDN 291 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 +L +D + T G R+ I PL D +I R ++N ++ P+ + LK+ Sbjct: 292 TLATVLDNTATAMGSRMLQRWIHQPLRDPNQIIARQTAVNELLKTGTH-EPLHEQLKALG 350 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGI------RSGINILNLFLKNDLPEELRGAVEKLKK 426 D+ R ++RL + P+D A +R + + +++LN P ++ + L + Sbjct: 351 DIERIMARLALRTARPRDFARLRQALSLLPELQQSLSVLNA------PHTVK-LCQYLGE 403 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 P+ + L + D+ P RDGG +R+G + LDE R L + + + L+ + E T Sbjct: 404 FPEE-QALLERAIVDNPPMLIRDGGVIREGYNNELDEWRGLSEGASDYLVQLEAREKERT 462 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 I LK+ +N GY+IEV+ +S + + + RQT+ N+ R+ T EL + E + Sbjct: 463 GINTLKVGYNRVHGYYIEVSRLQSSQVPLN------YQRRQTLKNMERYITPELKEYEEK 516 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 + ++ AL +E + +E L + I+ + L ++ A +D+ A A+ Y P + Sbjct: 517 VLSSQGKALALEKQLWEQLFDLILPKLHELQAFARAAAELDVLSNFAERAETLGYICPQL 576 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 + GRHP+VE+ S PFIAN L N ++ ++TGPNMGGKST+ Sbjct: 577 SQDIGVQIDAGRHPVVERV----SQTPFIANPVTL-----HNQRRMLIVTGPNMGGKSTY 627 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ ALI +MA +G +VPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ Sbjct: 628 MRQVALITLMAHIGCFVPAERAVIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILHN 687 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT QS V++DEIGRGT+T DGLS+AW+ EYL + L ATH+ ELT L + + Sbjct: 688 ATAQSLVLMDEIGRGTSTYDGLSLAWSAAEYLAQQIGAMTLFATHYFELTQLPDLMAGVY 747 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN 846 N L + + I F+H V G A SYG+QV LAG+P VI A L+ E H Sbjct: 748 NVHLDAIEHEDTIAFMHAVQEGAASKSYGLQVAALAGVPAKVIKAAKHKLQQLESRDHQL 807 Query: 847 QKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + IQT + ++N L K++ +N D ++P AL LY +K Sbjct: 808 EGTKT----PIQTLLALPEPAENPAL--TKLQAINPDNLTPKQALDLLYELK 853 >gi|145635559|ref|ZP_01791258.1| DNA mismatch repair protein [Haemophilus influenzae PittAA] gi|145267222|gb|EDK07227.1| DNA mismatch repair protein [Haemophilus influenzae PittAA] Length = 861 Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust. Identities = 316/889 (35%), Positives = 496/889 (55%), Gaps = 44/889 (4%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 EEN + TPMM+QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG+ G Sbjct: 4 EENFQQHTPMMQQYLKLKAENPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGQSAG 63 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM G+P H Y+ KL+++G +AICEQI P +K V R +VR+VTPGT Sbjct: 64 QPIPMAGMPYHAVEGYLAKLVQLGESVAICEQIGDP-----AASKGPVERQIVRIVTPGT 118 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N + AV + + ++ +A +D+++G F++ ++ + L +++ RI P E+ Sbjct: 119 VSDEALLPERQDNLIAAVYQEKEKFGLATLDMTSGRFQLCEPADKETLRAELQRIAPVEL 178 Query: 198 IFSEK--ELSHAEY-KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 ++ E+ E++ E+ K L +P F+ S + + + + + FG Sbjct: 179 LYCEEFNEMAAIEHCKGLRR--------RPIWEFELSTAITLLNRQFGTKDLRAFG---- 226 Query: 255 VEKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS 309 VEK+ AA + Y K+TQ P I Q + +D+A R NLE+ + L+G Sbjct: 227 VEKSPLGLSAAGCLLQYAKETQRTALPHIQSISLIQNQDCIQLDAATRRNLELTQNLAGG 286 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 E +L +D +T G RL I P+ D K+ R SI + N L++ +Q L+ Sbjct: 287 TENTLSSVLDKCVTPMGSRLLKRWIHQPVRDVEKLKQRQQSIAEIL-NFDLVDELQPYLQ 345 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 D+ R L+R+ + P+D+ +R + I L ++ P L ++ + Sbjct: 346 LVGDMERILARVALRSARPRDLTRLRTALEQ-IPALRAIVQQKTPPFLTALFSQIADFSE 404 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 + L L + P RDGG + +G A LDE R L D + + + +L+ + E T I Sbjct: 405 QYD-LLQRALIETPPLLIRDGGVIAEGYHAELDEWRMLSDGATQYLENLEKRERESTGID 463 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LKI N GY+I+++ A ++ ++ RQT+ N R+ EL + E+++ Sbjct: 464 TLKIGFNAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKEYEDKVLK 517 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 + +AL +E + ++ L + ++ +L AS V++ +D+ + LA A NY P + Sbjct: 518 SKGAALALEKQLYDELFDLLLPHLGTLQLASLVLSELDVLVNLAERADTLNYVMPTFCDE 577 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 + +K+GRHP+VE+ LK PFIAN +L+ ++ L ++TGPNMGGKST++RQ Sbjct: 578 VSVKIKNGRHPVVEQVLK----DPFIANPVELN-----HNRHLLIITGPNMGGKSTYMRQ 628 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI ++A +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT Sbjct: 629 TALITLLAYIGSFVPADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATT 688 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 QS V++DEIGRGT+T DGLS+AWA E+L + R L ATH+ ELT L + L+ N Sbjct: 689 QSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLEGIANIH 748 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 L + N I F+H V G A SYG+ V LAG+P +VI A L EK ++ + Sbjct: 749 LDALEHNNTIAFMHAVQDGAASKSYGLAVAALAGVPQSVIKLAKQKLTQLEKNSSYSAEQ 808 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E + + + E I L+ D++SP AL LY +K Sbjct: 809 QIQALREANHNQGELFFEQETDALREAIDKLDPDDLSPKQALAYLYQLK 857 >gi|16272647|ref|NP_438865.1| DNA mismatch repair protein MutS [Haemophilus influenzae Rd KW20] gi|1171081|sp|P44834|MUTS_HAEIN RecName: Full=DNA mismatch repair protein mutS gi|1573708|gb|AAC22364.1| DNA mismatch repair protein (mutS) [Haemophilus influenzae Rd KW20] Length = 861 Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust. Identities = 316/889 (35%), Positives = 497/889 (55%), Gaps = 44/889 (4%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 EEN + TPMM+QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG+ G Sbjct: 4 EENFQQHTPMMQQYLKLKAENPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGQSAG 63 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM G+P H Y+ KL+++G +AICEQI P +K V R +VR+VTPGT Sbjct: 64 QPIPMAGMPYHAVEGYLAKLVQLGESVAICEQIGDPTTSK-----GPVERQIVRIVTPGT 118 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N + AV + + ++ +A +D+++G F++ ++ + L +++ RI P E+ Sbjct: 119 VSDEALLPERQDNLIAAVYQEKEKFGLATLDMTSGRFQLCEPADKETLRAELQRIAPVEL 178 Query: 198 IFSEK--ELSHAEY-KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 ++ E+ E++ E+ K L +P F+ S + + + + + FG Sbjct: 179 LYCEEFNEMAAIEHCKGLRR--------RPIWEFELSTAITLLNRQFGTKDLRAFG---- 226 Query: 255 VEKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS 309 VEK+ AA + Y K+TQ P I Q + +D+A R NLE+ + L+G Sbjct: 227 VEKSPLGLSAAGCLLQYAKETQRTALPHIQSISLIQNQDCIQLDAATRRNLELTQNLAGG 286 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 E +L +D +T G RL I P+ D K+ R SI + N L++ +Q L+ Sbjct: 287 TENTLASVLDKCVTPMGSRLLKRWIHQPVRDVEKLKQRQQSIAEIL-NFDLVDELQPYLQ 345 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 D+ R L+R+ + P+D+ +R + I L ++ P L ++ + Sbjct: 346 LVGDMERILARVALRSARPRDLTRLRTALEQ-IPALRAIVQQKTPPFLTALFSQIADFSE 404 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 + L L + P RDGG + +G +A LDE R L D + + + +L+ + E T I Sbjct: 405 QCD-LLQRALIETPPLLIRDGGVIAEGYNAELDEWRMLSDGATQYLENLEKRERESTGID 463 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LKI N GY+I+++ A ++ ++ RQT+ N R+ EL + E+++ Sbjct: 464 TLKIGFNAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKEYEDKVLK 517 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 + +AL +E + ++ L + ++ SL AS ++ +D+ + LA A NY P + Sbjct: 518 SKGAALALEKQLYDELFDLLLPHLGSLQLASLALSELDVLVNLAERADTLNYVMPTFCDE 577 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 + +K+GRHP+VE+ LK PFIAN +L+ ++ L ++TGPNMGGKST++RQ Sbjct: 578 VSVKIKNGRHPVVEQVLK----DPFIANPVELN-----HNRHLLVITGPNMGGKSTYMRQ 628 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI ++A +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT Sbjct: 629 TALITLLAYIGSFVPADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATA 688 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 QS V++DEIGRGT+T DGLS+AWA E+L + R L ATH+ ELT L + L+ N Sbjct: 689 QSLVLIDEIGRGTSTYDGLSLAWACAEWLSKKIRSLTLFATHYFELTALPEQLEGIANIH 748 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 L + N I F+H V G A SYG+ V LAG+P +VI A L EK ++ + Sbjct: 749 LDALEHNNTIAFMHAVQNGAASKSYGLAVAALAGVPQSVIKLAKQKLTQLEKNSSYSAEQ 808 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E + + + E I+ L+ D++SP AL LY +K Sbjct: 809 QIQALREANHNQGELFFEQETDALREAIEKLDPDDLSPKQALAYLYQLK 857 >gi|330446962|ref|ZP_08310613.1| DNA mismatch repair protein MutS [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491153|dbj|GAA05110.1| DNA mismatch repair protein MutS [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 859 Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust. Identities = 310/886 (34%), Positives = 492/886 (55%), Gaps = 38/886 (4%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 + L+ TPMM+Q+++IK+ NPD L+FYRMGDFYE+FFDDA AS+ L I+LTKRG G+ Sbjct: 4 KGLEKHTPMMQQFLKIKAENPDVLLFYRMGDFYEMFFDDAKRASQLLDISLTKRGSTNGE 63 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H Y+ KL++ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 64 PIPMAGVPYHAVEGYLAKLVQQGVSVAICEQIGDPAT-----SKGPVERKVVRIVTPGTV 118 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL+ N + A+ ++ A +DI++G F ++ ++ + + +++ R P E++ Sbjct: 119 SDEALLNERRDNLIAAIYTENNKFGYATLDITSGRFMLTEPASEEEMQAELQRTSPAELL 178 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 + E Y L E +P F+ + ++ + + FG +++ Sbjct: 179 YPED----FTYLHLVEPFKG-KRRRPIWEFELDTARQQLTLQFGTRDLVGFGVENAELGL 233 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA + Y+K TQ P I + + +D+A R NLE+ + L+G + +L Sbjct: 234 CAAGCLMQYVKDTQRTALPHIRAITLDTKDHAVILDAATRRNLELTQNLAGGYDNTLASV 293 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D + T G RL + P+ D ++N RLD+I F + + ++ + +L+ D+ R Sbjct: 294 LDQTATPMGSRLLKRWLHQPIRDQKQLNGRLDAIEAFKDSGMFVD-VAGVLRHMGDLERI 352 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE----ELRGAVEKLKKLPQSLEK 433 L+RL + P+D+A +R ++ + L ++P+ +L + +L + LE+ Sbjct: 353 LARLALRSARPRDLARMRTAMQYLPELAELL--AEVPQARISDLATYAAPMDELCELLER 410 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + ++ P RDGG L G +A LDE R L D + + + L+ E I +LK+ Sbjct: 411 AII----ENPPVIIRDGGVLAPGYNAELDEWRDLADGATKFLEELEASERERHDIDSLKV 466 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N G+FI+V+ + ++ ++ RQT+ N R+ EL + E+++ N+ + Sbjct: 467 GFNQVHGFFIQVSRGQSHLVPS------HYVRRQTLKNAERYIIPELKEHEDKVLNSKSK 520 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E + +E L + ++ E L NA+ ++ +D+ LA A NYCRP + T Sbjct: 521 ALALEKKLWEELFDQLLPHLEQLQNAASALSELDVLTNLAERADSLNYCRPELMEQTGIE 580 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + GRHP+VE L S+PFIAN +S D+ ++ ++TGPNMGGKST++RQ ALI Sbjct: 581 ITAGRHPVVEHVL----SEPFIANP--ISLHQDR---RMLIITGPNMGGKSTYMRQTALI 631 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +GS+VPA IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT QS V Sbjct: 632 ALMAHVGSFVPAEAVKIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATQQSLV 691 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA+ E+L + L ATH+ ELT+L L N L Sbjct: 692 LMDEIGRGTSTYDGLSLAWASAEWLADKLSAMTLFATHYFELTELPSLLTGLANVHLDAV 751 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 + + I F+H V G A SYG+ V LAG+P +VI RA L+ E H Sbjct: 752 EHGDEIAFMHAVQEGAASKSYGLAVASLAGVPKSVIKRAKIKLQQLEASGHQQALQPDAL 811 Query: 854 YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + +E + +L E + +N D+++P AL LY +KA Sbjct: 812 ASQAPKEEHQLSLIPEPSEIEEALANVNPDDLTPRQALDELYRLKA 857 >gi|172087668|ref|YP_203917.2| DNA mismatch repair protein [Vibrio fischeri ES114] gi|110826510|sp|Q5E7G7|MUTS_VIBF1 RecName: Full=DNA mismatch repair protein mutS gi|171902263|gb|AAW85029.2| methyl-directed mismatch repair protein [Vibrio fischeri ES114] Length = 854 Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust. Identities = 314/883 (35%), Positives = 492/883 (55%), Gaps = 49/883 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ +KS NPD L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IPM G Sbjct: 10 TPMMQQYLRLKSENPDILLFYRMGDFYELFYDDAKRASQLLEISLTKRGSSAGEPIPMAG 69 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H Y+ KL++ G +AICEQ+ P +K V R VVR+VTPGT+T++ LL Sbjct: 70 IPYHAVEGYLAKLVQQGESVAICEQVGDPATSK-----GPVERKVVRIVTPGTVTDEALL 124 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSN-HDRLISDIMRIDPREIIFSEKEL 204 N + A+ + ++ A +DI++G FK+S N + +++++ R P E++FSE Sbjct: 125 PERFDNLIAAIYHHKGQFGYATLDITSGRFKVSEPNTEEAMLAELQRTAPTELLFSED-- 182 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT-----A 259 E L E N +P F+ ++ ++ + + + FG VEK A Sbjct: 183 --FEPVHLLEKR-NGNRRRPVWEFELDTAKQQLNNQFGTRDLVGFG----VEKAEFGLCA 235 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A I Y+K TQ P I + ++ +D+A R NLEI + L+G +L + +D Sbjct: 236 AGCLIQYVKDTQRTTLPHIRSIIMDHQDDSVILDAATRRNLEITQNLAGGFNHTLAEILD 295 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 ++ T G RL + P+ +N RLD+I ++ + + + LK+ DV R L+ Sbjct: 296 HTSTAMGSRLLKRWLHQPVRTHDVLNQRLDAIGELKESGLFAD-MAPQLKNIGDVERILA 354 Query: 380 RLKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 RL + P+D+A +R+ ++ ++ + D L + + + + + LE+ + Sbjct: 355 RLALRSARPRDLARLRNALQQLPELSQTTQEFQQDHLLTLAASAQPIDSICELLERAIK- 413 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 ++ P RDGG L DG + LD+ R L + + + + L+ + E I LK+ +NN Sbjct: 414 ---ENPPVVIRDGGVLADGYNEELDQWRDLANGATQYLEKLEQEERERHDIDTLKVGYNN 470 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 G++I+++ + ++ ++ RQT+ N R+ EL + E+++ N+ + AL I Sbjct: 471 VHGFYIQISKGQSH------KAPAHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALAI 524 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E +E L + ++ E L + + I+ +D+ LA A NYCRP++ T ++ G Sbjct: 525 EKRLWEELFDQLLPHLEQLQSMANAISELDVLSNLAERADTLNYCRPVLTKETGINIEGG 584 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ + S PFIAN L+ P+ K + ++TGPNMGGKST++RQ ALI +MA Sbjct: 585 RHPVVEQVM----SDPFIANPIKLN-PDRK----MLIITGPNMGGKSTYMRQTALIALMA 635 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +G YVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V++DE Sbjct: 636 HVGCYVPADSAEIGTLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKHSLVLMDE 695 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGT+T DGLS+AWA+ E+L L ATH+ ELT+L N L + + Sbjct: 696 IGRGTSTYDGLSLAWASAEWLATKINAMTLFATHYFELTELPNLFTGLANVHLDAVEHGD 755 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 I F+H V G A+ SYG+ V LAG+P +VI +A +KL H + + Sbjct: 756 EIAFMHAVQEGAANKSYGLAVASLAGVPKSVIKKAK------QKLQHLESGQVPVPATST 809 Query: 858 QTKESKN-NLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 KE +L E + +N D+++P AL+ LY +KA Sbjct: 810 TVKEEHQLSLIPEISEVEEALAHVNPDDLTPRQALEELYRLKA 852 >gi|157374438|ref|YP_001473038.1| DNA mismatch repair protein [Shewanella sediminis HAW-EB3] gi|189083193|sp|A8FST7|MUTS_SHESH RecName: Full=DNA mismatch repair protein mutS gi|157316812|gb|ABV35910.1| DNA mismatch repair protein MutS [Shewanella sediminis HAW-EB3] Length = 859 Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust. Identities = 325/891 (36%), Positives = 486/891 (54%), Gaps = 48/891 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +NL+ TPMMRQY+ +K+ +P+ L+FYRMGDFYELF+DDA AS LGI+LT RGK G Sbjct: 7 QNLEKHTPMMRQYLTLKAEHPEMLLFYRMGDFYELFYDDAKKASELLGISLTARGKSGGD 66 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H Y+ KL+++ +AICEQ+ P +K V R VVRLVTPGTL Sbjct: 67 PIPMAGLPYHAVEGYLAKLVQLRVSVAICEQVGDPATSK-----GPVERKVVRLVTPGTL 121 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREII 198 T++ LL N L AV ++ + A +DIS+G F ++ ++ + L +++ R +P E++ Sbjct: 122 TDEALLQEKQDNLLAAVYHGKSGYGYATLDISSGRFVVAELASTEALEAELQRTNPAELL 181 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 +SE + S S F N +P FD S+ + D + + FG +++ Sbjct: 182 YSE-DFSEMGLISGF----NGKRRRPEWEFDFDTSQKLLLDQFGTKDLRGFGLDNARLSL 236 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA + Y+K TQ P I R + ++ +D+A R NLE+ L G E +L Sbjct: 237 QAAGCLMQYVKDTQRTALPHINSIVRFNQSDSIVLDAATRRNLELTVNLQGGHENTLASV 296 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D + T G R+ I PL + +I +R ++ + L ++ LK+ DV R Sbjct: 297 LDNTATPMGSRMLQRWIHEPLRNQQQIESRQSALTEILDTN-LFETLEPQLKALGDVERI 355 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 +RL + P+D A ++ I S + + L N L L + P LE L Sbjct: 356 TARLALRSARPRDFARLKQAI-SLLPEIQQSLANCQSAHLHHLARMLGEFPDELE-LLER 413 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + D+ P RDGG L++G +A LD+ R+L + ++ L+ + E+T I LK+ +N Sbjct: 414 AIVDNPPMLIRDGGVLKEGYNAELDQWRALSQGATDYLSELEAREKEQTGISTLKVGYNR 473 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IEV+ + ++ + RQT+ N R+ EL + E ++ ++ AL + Sbjct: 474 VHGYYIEVSRRESDLVPLS------YQRRQTLKNTERYIIAELKEHEEKVLSSQGKALAL 527 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + +E L + I+ + L +Q A +D+ A A+ NY P + + ++ G Sbjct: 528 EKQLWEQLFDQILPKLHDLQLFAQGAAELDVINNFAERAETLNYSCPTLSQKSGIHIEGG 587 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE Q S PFIAN L+ K+ ++TGPNMGGKST++RQ ALI +M Sbjct: 588 RHPVVE----QVSQTPFIANPVTLNPAR-----KMLIVTGPNMGGKSTYMRQVALITLMT 638 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +G YVPA A IG VD++F+R+G+AD+LASGRSTFMVEM ETA+IL+ AT +S V++DE Sbjct: 639 HIGCYVPAQSAVIGPVDRIFTRIGAADDLASGRSTFMVEMTETANILHNATTESLVLMDE 698 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGT+T DGLS+AW+ EYL + L ATH+ ELT L + + N L + + Sbjct: 699 IGRGTSTYDGLSLAWSAAEYLAQKIEAMTLFATHYFELTQLPELISNVENVHLDAIEHGD 758 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 I+F+H V G A SYG+QV LAG+P VI+ A KL+H +D + Sbjct: 759 TIVFMHAVQEGAASKSYGLQVAALAGVPGKVITAAK------HKLHHLESRDTNSAVDSM 812 Query: 858 QTKESKN-------NLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWT 901 T ++ N + ND L +KI + DE+SP AL LY +K T Sbjct: 813 TTSNQQSMVFDEPVNSALNDAL--DKI---HPDELSPRQALDILYELKRLT 858 >gi|156975771|ref|YP_001446678.1| DNA mismatch repair protein [Vibrio harveyi ATCC BAA-1116] gi|166232149|sp|A7MTT8|MUTS_VIBHB RecName: Full=DNA mismatch repair protein mutS gi|156527365|gb|ABU72451.1| hypothetical protein VIBHAR_03515 [Vibrio harveyi ATCC BAA-1116] Length = 853 Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust. Identities = 315/894 (35%), Positives = 489/894 (54%), Gaps = 66/894 (7%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 + TPMM+QY+++K+ NP+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IP Sbjct: 5 QKHTPMMQQYLKLKAENPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIP 64 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+T++ Sbjct: 65 MAGVPFHAVEGYLAKLVQLGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTVTDE 119 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFK-ISTSNHDRLISDIMRIDPREIIFSE 201 LLS N + A+ + ++ A +D+++G F+ + + + +++ R PRE++F E Sbjct: 120 ALLSERIDNLIAAIYQHNGKFGYATLDVTSGRFQLVEPETEEAMAAELQRTAPRELLFPE 179 Query: 202 KELSHAEYKSLFETLG-----NVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 FE + N +P F+ ++ ++ + + FG + + Sbjct: 180 D----------FEAVHLMSNRNGNRRRPVWEFELDTAKQQLNQQFGTRDLVGFGVEHASL 229 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA I Y+K TQ P I + ++ +D+A R NLE+ + LSG + +L Sbjct: 230 GLCAAGCLIQYVKDTQRTALPHIRSLTFDRQDHSVILDAATRRNLELTQNLSGGTDNTLA 289 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 + +D+ T G R+ + P+ +N RLD+I I++ L IQ I K D+ Sbjct: 290 EVLDHCATPMGSRMLKRWLHQPMRCVDTLNNRLDAIGE-IKDQSLFTDIQPIFKQIGDIE 348 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRG-----AVEKLKKLPQ- 429 R L+RL + P+D+A +R ++ LPE L A LKKL Q Sbjct: 349 RILARLALRSARPRDMARLRHAMQQ------------LPE-LEAVTSSLAHPYLKKLAQF 395 Query: 430 -----SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAE 484 + L + ++ P R+GG + +G +A LDE R L D + + L+ E Sbjct: 396 AAPMDEVCDLLERAIKENPPVVIREGGVIAEGYNAELDEWRKLADGATEYLEKLEADERE 455 Query: 485 ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLE 544 I LK+ +N G+FI+V+ + ++ ++ RQT+ N R+ EL + E Sbjct: 456 RHGIDTLKVGYNAVHGFFIQVSRGQSHLVPP------HYVRRQTLKNAERYIIPELKEHE 509 Query: 545 NRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP 604 +++ N+ + AL +E + +E L + ++ E + N + I+ +D+ LA A +YCRP Sbjct: 510 DKVLNSKSKALAVEKKLWEELFDLLMPNLEKIQNLASAISQLDVLQNLAERADSLDYCRP 569 Query: 605 IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 ++ ++ GRHP+VE Q +S+PFIAN +LS ++ K+ ++TGPNMGGKS Sbjct: 570 TLNKEAGISIQAGRHPVVE----QVTSEPFIANPIELS-----SNRKMLIITGPNMGGKS 620 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 T++RQ ALI +MA +GSYVPA AHIG +D++F+R+G++D+LASGRSTFMVEM ETA+IL Sbjct: 621 TYMRQTALIALMAHIGSYVPAESAHIGSLDRIFTRIGASDDLASGRSTFMVEMTETANIL 680 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR 784 + AT S V++DEIGRGT+T DGLS+AWA+ E+L L ATH+ ELT+L L Sbjct: 681 HNATKNSLVLMDEIGRGTSTYDGLSLAWASAEWLATQIGAMTLFATHYFELTELPNLLPN 740 Query: 785 FHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYH 844 N L + + I F+H V G A SYG+ V LAG+P VI A + L E+L Sbjct: 741 LANVHLDAVEHGDSIAFMHAVQEGAASKSYGLAVAGLAGVPKPVIKNARNKLSQLEQLGQ 800 Query: 845 HNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 N P ++ +L + + ++ D+++P AL+ LY +K Sbjct: 801 GNDS----ARPSTVDVANQLSLIPEPSDVEQALSNIDPDDLTPRQALEELYRLK 850 >gi|260581476|ref|ZP_05849287.1| DNA mismatch repair protein MutS [Haemophilus influenzae RdAW] gi|260091877|gb|EEW75829.1| DNA mismatch repair protein MutS [Haemophilus influenzae RdAW] Length = 861 Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust. Identities = 316/889 (35%), Positives = 497/889 (55%), Gaps = 44/889 (4%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 EEN + TPMM+QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG+ G Sbjct: 4 EENFQQHTPMMQQYLKLKAENPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGQSAG 63 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM G+P H Y+ KL+++G +AICEQI P +K V R +VR+VTPGT Sbjct: 64 QPIPMAGMPYHAVEGYLAKLVQLGESVAICEQIGDPTT-----SKGPVERQIVRIVTPGT 118 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N + AV + + ++ +A +D+++G F++ ++ + L +++ RI P E+ Sbjct: 119 VSDEALLPERQDNLIAAVYQEKEKFGLATLDMTSGRFQLCEPADKETLRAELQRIAPVEL 178 Query: 198 IFSEK--ELSHAEY-KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 ++ E+ E++ E+ K L +P F+ S + + + + + FG Sbjct: 179 LYCEEFNEMAAIEHCKGLRR--------RPIWEFELSTAITLLNRQFGTKDLRAFG---- 226 Query: 255 VEKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS 309 VEK+ AA + Y K+TQ P I Q + +D+A R NLE+ + L+G Sbjct: 227 VEKSPLGLSAAGCLLQYAKETQRTALPHIQSISLIQNQDCIQLDAATRRNLELTQNLAGG 286 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 E +L +D +T G RL I P+ D K+ R SI + N L++ +Q L+ Sbjct: 287 TENTLASVLDKCVTPMGSRLLKRWIHQPVRDVEKLKQRQQSIAEIL-NFDLVDELQPYLQ 345 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 D+ R L+R+ + P+D+ +R + I L ++ P L ++ + Sbjct: 346 LVGDMERILARVALRSARPRDLTRLRTALEQ-IPALRAIVQQKTPPFLTALFSQIADFSE 404 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 + L L + P RDGG + +G +A LDE R L D + + + +L+ + E T I Sbjct: 405 QCD-LLQRALIETPPLLIRDGGVIAEGYNAELDEWRMLSDGATQYLENLEKRERESTGID 463 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LKI N GY+I+++ A ++ ++ RQT+ N R+ EL + E+++ Sbjct: 464 TLKIGFNAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKEYEDKVLK 517 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 + +AL +E + ++ L + ++ SL AS ++ +D+ + LA A NY P + Sbjct: 518 SKGAALALEKQLYDELFDLLLPHLGSLQLASLALSELDVLVNLAERADTLNYVMPTFCDE 577 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 + +K+GRHP+VE+ LK PFIAN +L+ ++ L ++TGPNMGGKST++RQ Sbjct: 578 VSVKIKNGRHPVVEQVLK----DPFIANPVELN-----HNRHLLVITGPNMGGKSTYMRQ 628 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI ++A +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT Sbjct: 629 TALITLLAYIGSFVPADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATA 688 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 QS V++DEIGRGT+T DGLS+AWA E+L + R L ATH+ ELT L + L+ N Sbjct: 689 QSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLEGIANIH 748 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 L + N I F+H V G A SYG+ V LAG+P +VI A L EK ++ + Sbjct: 749 LDALEHNNTIAFMHAVQNGAASKSYGLAVAALAGVPQSVIKLAKQKLTQLEKNSSYSAEQ 808 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E + + + E I+ L+ D++SP AL LY +K Sbjct: 809 QIQALREANHNQGELFFEQETDALREAIEKLDPDDLSPKQALAYLYQLK 857 >gi|115299208|sp|Q5QUB6|MUTS_IDILO RecName: Full=DNA mismatch repair protein mutS Length = 871 Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust. Identities = 315/902 (34%), Positives = 504/902 (55%), Gaps = 73/902 (8%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 ++ ++S TPMM+QY+ IK+ + D L+FYRMGDFYELFF+DA +++ L I+LT RG+ G Sbjct: 6 DKQIQSHTPMMQQYLRIKAEHADMLLFYRMGDFYELFFEDAKRSAQLLDISLTARGQSNG 65 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM GVP H +Y+ +L+ +G +AICEQI P +K V R VVR+VTPGT Sbjct: 66 EPIPMAGVPYHAVENYLARLVNMGESVAICEQIGDPATSK-----GPVERKVVRIVTPGT 120 Query: 139 LTEDQLLSPTDSNYLMAVARI-----RTEWAIAWIDISTGIFKISTSNH-DRLISDIMRI 192 +T++ LL+ N L+A+ + E+AI+ +++S+G F ++ ++ ++L +++ R+ Sbjct: 121 VTDESLLAEKRQNLLVAICPLNPKQPEAEYAISSLELSSGRFWLTKAHSSEQLAAEMQRL 180 Query: 193 DPREIIFSEK------ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTV 246 +P E+++ E L+ A+ K +P F+ + + + + Sbjct: 181 EPAELLYPESISLAGLPLAKAKCKR-----------RPAWEFEQQTAFMLLTRQFGTQHL 229 Query: 247 DTFGSFSQVEKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT 305 + FG + AAA AI Y+K+TQ P I E Q + +D+A R NLE+ ++ Sbjct: 230 EGFGIKNNEPTLAAAGAILHYVKETQRAALPHIQALITEHPQDAIILDAATRRNLELQQS 289 Query: 306 LSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQ 365 + G + L +D +++ G R F + P+ + ++N R D+++ +N N IQ Sbjct: 290 M-GEGDTHLSAVLDKTVSAMGSRQFQRWLQRPIRNHQELNQRYDAVDALKENLNFEN-IQ 347 Query: 366 KILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG------IRSGINILNLFLKNDLPEELRG 419 LK D+ R ++R+ + PKD A +RD +R+ ++ +L +D+ E Sbjct: 348 LTLKQLADIERIVARVGLRSARPKDFARLRDSLAKIPEVRASLSHRSLSYLHDIIEPFPE 407 Query: 420 AVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQ 479 V+ L K + + P RDGG + +G D LDE R L + + L+ Sbjct: 408 VVDLLTK-----------AVIEQPPLLIRDGGVIAEGYDKELDELRDLATGATDYLKQLE 456 Query: 480 LKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLE 539 + E + I LK+ +N GYFIEV+ S+ + D + RQT+ N R+ E Sbjct: 457 QRERERSGIATLKVGYNRVHGYFIEVSRQSSEAVPDD------YQRRQTLKNTERYIIPE 510 Query: 540 LIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQ 599 L + E+++ NA +L E ++ L ++ Q +L ++ +A +D A LA Sbjct: 511 LKEHEDKVLNAQARSLAREKWLYDQLFEHLLPQVTALQKSASGLAQLDTLCCFARLADNY 570 Query: 600 NYCRPIIDNSTNFI-VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGP 658 YCRP + T+ I ++ RHP++E Q S +PFIAN L+ P + + ++TGP Sbjct: 571 RYCRPQLQKETSLIELEAARHPVIE----QLSDEPFIANPMSLT-PQQR----MLMITGP 621 Query: 659 NMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMI 718 NMGGKST++RQ ALIVI+A MG YVPA A IG +D++F+R+G++D+LASGRSTFMVEM Sbjct: 622 NMGGKSTYMRQAALIVILAHMGCYVPADKAIIGDIDRIFTRIGASDDLASGRSTFMVEMT 681 Query: 719 ETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDL 778 ETA+IL+ AT +S V++DEIGRGT+T DGLS+AW+ +YL +C L ATH+ ELT+L Sbjct: 682 ETANILHNATAKSLVLMDEIGRGTSTYDGLSLAWSCADYLSRQLQCLTLFATHYFELTEL 741 Query: 779 SKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKT 838 ++ L N + + + I FLHKV PG A S+G+QV KLAG+P VI +A L Sbjct: 742 AEELPATVNVHVDAKEHGDTIAFLHKVSPGAASQSFGLQVAKLAGVPEHVIHKAKQKLSE 801 Query: 839 FEKLYHHN-----QKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKT 893 E +H Q M L P E+ + ++ +++++ L++++++P AL Sbjct: 802 LEHTHHGGLNEPKQATMELTPP----PEAIPSHTEKRNPLLDELEQLDINDLTPKQALDI 857 Query: 894 LY 895 LY Sbjct: 858 LY 859 >gi|269965240|ref|ZP_06179374.1| DNA mismatch repair protein MutS [Vibrio alginolyticus 40B] gi|269830226|gb|EEZ84453.1| DNA mismatch repair protein MutS [Vibrio alginolyticus 40B] Length = 853 Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust. Identities = 309/888 (34%), Positives = 489/888 (55%), Gaps = 54/888 (6%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 + TPMM+QY+++K+ NP+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IP Sbjct: 5 QKHTPMMQQYLKLKAENPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIP 64 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+T++ Sbjct: 65 MAGVPFHAVEGYLAKLVQLGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTVTDE 119 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSE 201 LLS N + A+ ++ A +D+++G F+++ + + +++ R PRE++F E Sbjct: 120 ALLSERVDNLIAAIYHHNDKFGYATLDVTSGRFQLTEPETEEAMTAELQRTSPRELLFPE 179 Query: 202 KELSHAEYKSLFETLGNVAVA-----QPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 FE + +A +P F+ ++ ++ + + FG + + Sbjct: 180 D----------FEPVHLMASRNGNRRRPVWEFELDTAKQQLNQQFGTKDLVGFGVEHASL 229 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA I Y+K TQ P I + ++ +D+A R NLEI + L+G + +L Sbjct: 230 GLCAAGCLIQYVKDTQRTALPHIRSLTFDHQDQSVILDAATRRNLEITQNLAGGTDNTLA 289 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D+ T G R+ + P+ +N RLD+I I+ L +Q LK D+ Sbjct: 290 AVLDHCATPMGSRMLKRWLHQPMRCIETLNNRLDAIGE-IKEQALFADLQPTLKQIGDIE 348 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT- 434 R L+RL + P+D+A +R+ ++ + ++ P + KL K +++ Sbjct: 349 RILARLALRSARPRDMARLRNAMQQLPELESVTASLTHP-----YLTKLAKYAAPIDEVC 403 Query: 435 --LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 L + ++ P RDGG + +G +A LDE R L D + + L+ E I LK Sbjct: 404 DLLERAIKENPPVVIRDGGVIAEGYNAELDEWRKLADGATEYLEQLERDERERHGIDTLK 463 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 + +NN G+FI+V+ + ++ ++ RQT+ N R+ EL + E+++ N+ + Sbjct: 464 VGYNNVHGFFIQVSRGQSHLVPP------HYVRRQTLKNAERYIIPELKEHEDKVLNSKS 517 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 AL +E + +E L + ++ E L N + ++ +D+ LA A +YCRP + Sbjct: 518 KALALEKQLWEELFDLLMPNLEKLQNLASALSQLDVLQNLAERADSLDYCRPTLVKDAGI 577 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 ++ GRHP+VE Q +++PFIAN +L+ + K+ ++TGPNMGGKST++RQ AL Sbjct: 578 HIQAGRHPVVE----QVTTEPFIANPIELN-----PARKMLIITGPNMGGKSTYMRQTAL 628 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 I +MA +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S Sbjct: 629 IALMAHIGSYVPAESAQIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSL 688 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 V++DEIGRGT+T DGLS+AWA+ E+L L ATH+ ELT+L L N L Sbjct: 689 VLMDEIGRGTSTYDGLSLAWASAEWLATQIGAMTLFATHYFELTELPSQLPNLANVHLDA 748 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 + + I F+H V G A SYG+ V LAG+P TVI A + L E+L ++ Sbjct: 749 VEHGDSIAFMHAVQEGAASKSYGLAVAGLAGVPKTVIKNARNKLSQLEQLGQNSDT---- 804 Query: 853 YYPEIQTKESKNNLS--KNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P + N LS + + ++ D+++P AL+ LY +K Sbjct: 805 --PRPSAVDVANQLSLIPEPSEVEQALSGIDPDDLTPRQALEELYRLK 850 >gi|145633766|ref|ZP_01789491.1| DNA mismatch repair protein [Haemophilus influenzae 3655] gi|144985425|gb|EDJ92252.1| DNA mismatch repair protein [Haemophilus influenzae 3655] Length = 861 Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust. Identities = 314/889 (35%), Positives = 498/889 (56%), Gaps = 44/889 (4%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 EEN + TPMM+QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG+ G Sbjct: 4 EENFQQHTPMMQQYLKLKAENPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGQSAG 63 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM G+P H Y+ KL+++G +AICEQI P +K V R +VR+VTPGT Sbjct: 64 QPIPMAGMPYHAVEGYLAKLVQLGESVAICEQIGDP-----AASKGPVERQIVRIVTPGT 118 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N + AV + + ++ +A +D+++G F++ ++ + L +++ RI P E+ Sbjct: 119 VSDEALLPERQDNLIAAVYQEKEKFGLATLDMTSGRFQLCEPADKETLRAELQRIAPVEL 178 Query: 198 IFSEK--ELSHAEY-KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 ++ E+ E++ E+ K L +P F+ S + + + + + FG Sbjct: 179 LYCEEFNEMAAIEHCKGLRR--------RPIWEFELSTAITLLNRQFGTKDLRAFG---- 226 Query: 255 VEKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS 309 VEK+ AA + Y K+TQ P I Q + +D+A R NLE+ + L+G Sbjct: 227 VEKSPLGLSAAGCLLQYAKETQRTALPHIQSISLIQNQDCIQLDAATRRNLELTQNLAGG 286 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 E +L +D +T G RL I P+ D K+ R SI + N L++ +Q L+ Sbjct: 287 TENTLSSVLDKCVTPMGSRLLKRWIHQPVRDVEKLKQRQQSIAEIL-NFDLVDELQPYLQ 345 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 D+ R L+R+ + P+D+ +R + I +L ++ P L ++ + Sbjct: 346 LVGDMERILARVALRSARPRDLTRLRTALEQ-IPVLRAIVQQKTPPFLTALFSQIADFSE 404 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 + L L + P RDGG + +G +A LDE R L D + + + +L+ + E T I Sbjct: 405 QCD-LLQRALIETPPLLIRDGGVIAEGYNAELDEWRMLSDGATQYLENLEKRERESTGID 463 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LKI N GY+I+++ A ++ ++ RQT+ N R+ EL + E+++ Sbjct: 464 TLKIGFNAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKEYEDKVLK 517 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 + +AL +E + ++ L + ++ +L AS ++ +D+ + LA A NY P + Sbjct: 518 SKGAALALEKQLYDELFDLLLPHLGTLQLASLALSELDVLVNLAERADTLNYVMPTFCDE 577 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 + +++GRHP+VE+ LK PFIAN +L+ ++ L ++TGPNMGGKST++RQ Sbjct: 578 VSVKIENGRHPVVEQVLK----DPFIANPVELN-----HNRHLLVITGPNMGGKSTYMRQ 628 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI ++A +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT Sbjct: 629 TALITLLAYIGSFVPADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATA 688 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 QS V++DEIGRGT+T DGLS+AWA E+L + R L ATH+ ELT L + L+ N Sbjct: 689 QSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLESIANIH 748 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 L + N I F+H V G A SYG+ V LAG+P +VI A L EK ++ + Sbjct: 749 LDALEHNNTIAFMHAVQDGAASKSYGLAVAALAGVPQSVIKLAKQKLTQLEKNSSYSAEQ 808 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E + + + E I+ L+ D++SP AL LY +K Sbjct: 809 QIQALREANHNQGELLFEQETDALREAIEKLDPDDLSPKQALAYLYQLK 857 >gi|91227833|ref|ZP_01262006.1| DNA mismatch repair protein [Vibrio alginolyticus 12G01] gi|91188343|gb|EAS74639.1| DNA mismatch repair protein [Vibrio alginolyticus 12G01] Length = 853 Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust. Identities = 309/888 (34%), Positives = 489/888 (55%), Gaps = 54/888 (6%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 + TPMM+QY+++K+ NP+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IP Sbjct: 5 QKHTPMMQQYLKLKAENPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIP 64 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+T++ Sbjct: 65 MAGVPFHAVEGYLAKLVQLGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTVTDE 119 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSE 201 LLS N + A+ ++ A +D+++G F+++ + + +++ R PRE++F E Sbjct: 120 ALLSERVDNLIAAIYHHNGKFGYATLDVTSGRFQLTEPETEEAMTAELQRTAPRELLFPE 179 Query: 202 KELSHAEYKSLFETLGNVAVA-----QPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 FE + +A +P F+ ++ ++ + + FG + + Sbjct: 180 D----------FEPVHLMASRNGNRRRPVWEFELDTAKQQLNQQFGTKDLVGFGVEHASL 229 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA I Y+K TQ P I + ++ +D+A R NLEI + L+G + +L Sbjct: 230 GLCAAGCLIQYVKDTQRTALPHIRSLTFDHQDQSVILDAATRRNLEITQNLAGGTDNTLA 289 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D+ T G R+ + P+ +N RLD+I I+ L +Q LK D+ Sbjct: 290 AVLDHCATPMGSRMLKRWLHQPMRCIETLNNRLDAIGE-IKEQALFADLQPTLKQIGDIE 348 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT- 434 R L+RL + P+D+A +R+ ++ + ++ P + KL K +++ Sbjct: 349 RILARLALRSARPRDMARLRNAMQQLPELESVTASLTHP-----YLTKLAKYAAPIDEVC 403 Query: 435 --LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 L + ++ P RDGG + +G +A LDE R L D + + L+ E I LK Sbjct: 404 DLLERAIKENPPVVIRDGGVIAEGYNAELDEWRKLADGATEYLEQLERDERERHGIDTLK 463 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 + +NN G+FI+V+ + ++ ++ RQT+ N R+ EL + E+++ N+ + Sbjct: 464 VGYNNVHGFFIQVSRGQSHLVPP------HYVRRQTLKNAERYIIPELKEHEDKVLNSKS 517 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 AL +E + +E L + ++ E L N + ++ +D+ LA A +YCRP + Sbjct: 518 KALALEKQLWEELFDLLMPNLEKLQNLASALSQLDVLQNLAERADSLDYCRPTLVKDAGI 577 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 ++ GRHP+VE Q +++PFIAN +L+ + K+ ++TGPNMGGKST++RQ AL Sbjct: 578 HIQAGRHPVVE----QVTTEPFIANPIELN-----PARKMLIITGPNMGGKSTYMRQTAL 628 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 I +MA +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S Sbjct: 629 IALMAHIGSYVPAESAQIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSL 688 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 V++DEIGRGT+T DGLS+AWA+ E+L L ATH+ ELT+L L N L Sbjct: 689 VLMDEIGRGTSTYDGLSLAWASAEWLATQIGAMTLFATHYFELTELPSQLPNLANVHLDA 748 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 + + I F+H V G A SYG+ V LAG+P TVI A + L E+L ++ Sbjct: 749 VEHGDSIAFMHAVQEGAASKSYGLAVAGLAGVPKTVIKNARNKLSQLEQLGQNSDT---- 804 Query: 853 YYPEIQTKESKNNLS--KNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P + N LS + + ++ D+++P AL+ LY +K Sbjct: 805 --PRPSAVDVANQLSLIPEPSEVEQALSGIDPDDLTPRQALEELYRLK 850 >gi|260582960|ref|ZP_05850743.1| DNA mismatch repair protein MutS [Haemophilus influenzae NT127] gi|260093944|gb|EEW77849.1| DNA mismatch repair protein MutS [Haemophilus influenzae NT127] Length = 861 Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust. Identities = 316/889 (35%), Positives = 497/889 (55%), Gaps = 44/889 (4%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 EEN + TPMM+QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG+ G Sbjct: 4 EENFQQHTPMMQQYLKLKAENPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGQSAG 63 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM G+P H Y+ KL+++G +AICEQI P +K V R +VR+VTPGT Sbjct: 64 QPIPMAGMPYHAVEGYLAKLVQLGESVAICEQIGDP-----TTSKGPVERQIVRIVTPGT 118 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N + AV + + ++ +A +D+++G F++ ++ + L +++ RI P E+ Sbjct: 119 VSDEALLPERQDNLIAAVYQEKEKFGLATLDMTSGRFQLCEPADKETLRAELQRIAPVEL 178 Query: 198 IFSEK--ELSHAEY-KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 ++ E+ E++ E+ K L +P F+ S + + + + + FG Sbjct: 179 LYCEEFNEMAAIEHCKGLRR--------RPIWEFELSTAITLLNRQFGTKDLRAFG---- 226 Query: 255 VEKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS 309 VEK+ AA + Y K+TQ P I Q + +D+A R NLE+ + LSG Sbjct: 227 VEKSPLGLSAAGCLLQYAKETQRTALPHIQSISLIQNQDCIQLDAATRRNLELTQNLSGG 286 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 E +L +D +T G RL I P+ D K+ R SI + N L++ +Q L+ Sbjct: 287 TENTLASVLDKCVTPMGSRLLKRWIHQPIRDVEKLKQRQQSIAEIL-NFDLVDELQTYLQ 345 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 D+ R L+R+ + P+D+ +R + I L ++ P L ++ + Sbjct: 346 LVGDMERILARVALRSARPRDLTRLRTALEQ-IPALRAIVQQKTPPFLTALFSQIADFSE 404 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 + L L + P RDGG + +G +A LDE R L D + + + +L+ + E T I Sbjct: 405 QCD-LLQRALIETPPLLIRDGGVIAEGYNAELDEWRMLSDGATQYLENLEKRERESTGID 463 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LKI N GY+I+++ A ++ ++ RQT+ N R+ EL + E+++ Sbjct: 464 TLKIGFNAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKEYEDKVLK 517 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 + +AL +E + ++ L + ++ SL AS ++ +D+ + LA A NY P + Sbjct: 518 SKGAALALEKQLYDELFDLLLPHLGSLQLASLALSELDVLVNLAERADTLNYVMPTFCDE 577 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 + +++GRHP+VE+ LK PFIAN +L+ ++ L ++TGPNMGGKST++RQ Sbjct: 578 VSVKIENGRHPVVEQVLK----DPFIANPVELN-----HNRHLLVITGPNMGGKSTYMRQ 628 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI ++A +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT Sbjct: 629 TALITLLAYIGSFVPADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATA 688 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 QS V++DEIGRGT+T DGLS+AWA E+L + R L ATH+ ELT L + L+ N Sbjct: 689 QSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLEGIANIH 748 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 L + N I F+H V G A SYG+ V LAG+P +VI A L EK ++ + Sbjct: 749 LDALEHNNTIAFMHAVQDGAASKSYGLAVAALAGVPQSVIKLAKQKLTQLEKNSSYSAEQ 808 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E + + + E I+ L+ D++SP AL LY +K Sbjct: 809 QIQALREANHNQGELLFEQETDALREAIEKLDPDDLSPKQALAYLYQLK 857 >gi|145629590|ref|ZP_01785387.1| DNA mismatch repair protein [Haemophilus influenzae 22.1-21] gi|144978101|gb|EDJ87874.1| DNA mismatch repair protein [Haemophilus influenzae 22.1-21] Length = 861 Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust. Identities = 315/889 (35%), Positives = 495/889 (55%), Gaps = 44/889 (4%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 EEN + TPMM+QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG+ G Sbjct: 4 EENFQQHTPMMQQYLKLKAENPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGQSAG 63 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM G+P H Y+ KL+++G +AICEQI P +K V R +VR+VTPGT Sbjct: 64 QPIPMAGMPYHAVEGYLAKLVQLGESVAICEQIGDPATSK-----GPVERQIVRIVTPGT 118 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N + AV + + ++ +A +D+++G F++ ++ + L +++ RI P E+ Sbjct: 119 VSDEALLPERQDNLIAAVYQEKEKFGLATLDMTSGRFQLCEPADKETLRAELQRIVPVEL 178 Query: 198 IFSEK--ELSHAEY-KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 ++ E+ E++ E+ K L +P F+ S + + + + + FG Sbjct: 179 LYCEEFNEMAAIEHCKGLRR--------RPIWEFELSTAITLLNRQFGTKDLRAFG---- 226 Query: 255 VEKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS 309 VEK+ AA + Y K+TQ P I Q + +D+A R NLE+ + L+G Sbjct: 227 VEKSPLGLSAAGCLLQYAKETQRTALPHIQSISLIQNQDCIQLDAATRRNLELTQNLAGG 286 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 E +L +D +T G RL I P+ D K+ R SI + N L++ +Q L+ Sbjct: 287 TENTLASVLDKCVTPMGSRLLKRWIHQPVRDVEKLKQRQQSIAEIL-NFDLVDELQPYLQ 345 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 D+ R L+R+ + P+D+ +R + I L ++ P L ++ + Sbjct: 346 LVGDMERILARVALRSARPRDLTRLRTALEQ-IPALRTIVQQKTPPFLTALFSQIADFSE 404 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 + L L + P RDGG + +G + LDE R L D + + + +L+ + E T I Sbjct: 405 QWD-LLQRALIETPPLLIRDGGVIAEGYNTELDEWRMLSDGATQYLENLEKRERESTGID 463 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LKI N GY+I+++ A ++ ++ RQT+ N R+ EL + E+++ Sbjct: 464 TLKIGFNAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKEYEDKVLK 517 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 + +AL +E + ++ L + ++ +L AS ++ +D+ + LA A NY P + Sbjct: 518 SKGAALALEKQLYDELFDLLLPHLGALQLASLALSELDVLVNLAERADTLNYVMPTFCDE 577 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 N +++GRHP+VE+ LK PFIAN +L+ ++ L ++TGPNMGGKST++RQ Sbjct: 578 VNVKIENGRHPVVEQVLK----DPFIANPVELN-----HNRHLLIITGPNMGGKSTYMRQ 628 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI ++A +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT Sbjct: 629 TALITLLAYIGSFVPADNARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATE 688 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 QS V++DEIGRGT+T DGLS+AWA E+L + R L ATH+ ELT L + L+ N Sbjct: 689 QSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLEGIVNIH 748 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 L + N I F+H V G A SYG+ V LAG+P +VI A L EK H+ Sbjct: 749 LDALEHNNSIAFMHAVQDGAASKSYGLAVAALAGVPQSVIKLAKQKLTQLEKNSSHSADQ 808 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E + + + E I+ L+ D++SP AL LY +K Sbjct: 809 QIQALREANHNQGELLFEQETDALREAIEKLDPDDLSPKQALAYLYQLK 857 >gi|294650961|ref|ZP_06728302.1| DNA mismatch repair protein MutS [Acinetobacter haemolyticus ATCC 19194] gi|292823142|gb|EFF82004.1| DNA mismatch repair protein MutS [Acinetobacter haemolyticus ATCC 19194] Length = 879 Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust. Identities = 338/898 (37%), Positives = 505/898 (56%), Gaps = 50/898 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L S TPMM+QY+++K +L+FYRMGDFYELFF+DA LA++ LGITLT RGK G+ Sbjct: 9 DLSSHTPMMQQYLKVKMEYSHALLFYRMGDFYELFFEDAHLAAKLLGITLTHRGKANGQP 68 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM GVP H+A Y+ +L+K G +AICEQ+ + K V R VVR++TPGTLT Sbjct: 69 IPMAGVPYHSAEGYLARLVKAGRTVAICEQV------GEVTGKGPVERKVVRVLTPGTLT 122 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH--DRLISDIMRIDPREII 198 +D LL S+ L+A+ + + IA +D+S IFK+ ++ ++L ++ R+ P EI+ Sbjct: 123 DDALLGSYQSSNLVALCIQQNQIGIALLDLSASIFKVQQQDYKPEQLAIELARLMPSEIL 182 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEK 257 E + + + + L +PNV F+ + ++ + D + ++T+ FG S + K Sbjct: 183 IDEDLIDQNIIEHIKKNLDCSVTKRPNVDFNLNNAQKTLCDQFAVSTLSGFGLDSLPLAK 242 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFI--DSAARSNLEILRTLSGSREQSLL 315 AAAA I Y K+TQ P I + E QST FI D R NLEI+ L SL Sbjct: 243 AAAAALIHYAKETQKTALPHIRSIQIE--QSTDFIALDPITRRNLEIIEPLF-EHGTSLF 299 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 + I+ T GGRL + + P+ D+ ++ RLD+ ++ +P++ +LK D+ Sbjct: 300 QLINDCQTAMGGRLLSRTLMQPIRDTAILDARLDATEQLLKG-YHESPVRLVLKEIGDIE 358 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLK-KLPQ----- 429 R LSR+ +G P+D+ +R FL++ L L+ KL +L Q Sbjct: 359 RVLSRVALGSARPRDLVQLRQACAQ-----IPFLRHALAPVLKTQQSKLLLQLDQELGDF 413 Query: 430 -SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 SL + L + + + P RDG + +G D LDE R +RD + + + L++K E T I Sbjct: 414 KSLHEHLMAAIVESPPVLLRDGNVIAEGYDDELDELRKIRDHAGQFLIDLEIKERERTGI 473 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 LKI +N GY+IE++ + A D +I RQT+ N R+ T EL E+++ Sbjct: 474 NTLKIGYNRVSGYYIELSRAQAEQAPAD------YIRRQTLKNAERYITPELKSFEDKVL 527 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 ++ + AL E FE L + + + L S IA ID+ A A+ N+ RP Sbjct: 528 SSESRALAREKLLFESLLDELRQNIAQLQMMSAAIAYIDVLANFAHQARFNNWARPEFTP 587 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 T + GRHP+VE K PF ND L + ++ ++TGPNMGGKSTF+R Sbjct: 588 ETCIKIHAGRHPVVEALNK----APFTPNDTFLDPQH-----RMAIITGPNMGGKSTFMR 638 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q ALI ++A GSYVPA A +G +D++F+R+GSAD+L++G+STFMVEM ET+ IL+ AT Sbjct: 639 QTALISLLAYCGSYVPAKSAKLGSIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHAT 698 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA 788 +QS V++DE+GRGT+T DGLS+AWA + L + +C L ATH+ ELT+LS S N Sbjct: 699 SQSLVLMDEVGRGTSTYDGLSLAWACVLDLTKRVKCLCLFATHYFELTELS-SETGIDNY 757 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN-- 846 + + N +I LHKV G A S+G+QV KLAG+P VI A LK EK H + Sbjct: 758 HVTAQELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLKILEKQQHQHLQ 817 Query: 847 ---QKDM-RLYYPEIQTK-ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 Q D+ EI+T+ K + + + +++D+++P AL+ LY++KA Sbjct: 818 NTVQNDLFSSIEHEIETQVVEKIVEVEVTSPALALLHQIDVDDLTPRQALEQLYSLKA 875 >gi|226951439|ref|ZP_03821903.1| methyl-directed mismatch repair protein, recognizes exocyclic adducts of guanosine [Acinetobacter sp. ATCC 27244] gi|226837806|gb|EEH70189.1| methyl-directed mismatch repair protein, recognizes exocyclic adducts of guanosine [Acinetobacter sp. ATCC 27244] Length = 879 Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust. Identities = 337/898 (37%), Positives = 505/898 (56%), Gaps = 50/898 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L S TPMM+QY+++K +L+FYRMGDFYELFF+DA LA++ LGITLT RGK G+ Sbjct: 9 DLSSHTPMMQQYLKVKMEYSHALLFYRMGDFYELFFEDAHLAAKLLGITLTHRGKANGQP 68 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM GVP H+A Y+ +L+K G +AICEQ+ + K V R VVR++TPGTLT Sbjct: 69 IPMAGVPYHSAEGYLARLVKAGRTVAICEQV------GEVTGKGPVERKVVRVLTPGTLT 122 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH--DRLISDIMRIDPREII 198 +D LL S+ L+A+ + + IA +D+S IFK+ ++ ++L ++ R+ P EI+ Sbjct: 123 DDALLGSYQSSNLVALCIQQNQIGIALLDLSASIFKVQQQDYKPEQLAIELARLMPSEIL 182 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEK 257 E + + + + L +PNV F+ + ++ + D + ++T+ FG S + K Sbjct: 183 IDEDLIDQNIIEHIKKNLDCSVTKRPNVDFNLNNAQKTLCDQFAVSTLSGFGLDSLPLAK 242 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFI--DSAARSNLEILRTLSGSREQSLL 315 AAAA I Y K+TQ P I + E QST FI D R NLEI+ L SL Sbjct: 243 AAAAALIHYAKETQKTALPHIRSIQIE--QSTDFIALDPITRRNLEIIEPLF-EHGTSLF 299 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 + I+ T GGRL + + P+ D+ ++ RLD+ ++ +P++ +LK D+ Sbjct: 300 QLINDCQTAMGGRLLSRTLMQPIRDTAILDARLDATEQLLKG-YHESPVRLVLKEIGDIE 358 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLK-KLPQ----- 429 R LSR+ +G P+D+ +R FL++ L L+ KL +L Q Sbjct: 359 RVLSRVALGSARPRDLVQLRQACAQ-----IPFLRHALAPVLKTQQSKLLLQLDQELGDF 413 Query: 430 -SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 SL + L + + + P RDG + +G D LDE R +RD + + + L++K E T I Sbjct: 414 KSLHEHLMAAIVESPPVLLRDGNVIAEGYDDELDELRKIRDHAGQFLIDLEIKERERTGI 473 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 LKI +N GY+IE++ + A D +I RQT+ N R+ T EL E+++ Sbjct: 474 NTLKIGYNRVSGYYIELSRAQAEQAPAD------YIRRQTLKNAERYITPELKSFEDKVL 527 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 ++ + AL E FE L + + + L S IA ID+ A A+ N+ RP Sbjct: 528 SSESRALAREKLLFESLLDELRQNIAQLQMMSAAIAYIDVLANFAHQARLNNWARPEFTP 587 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 T + GRHP+VE K PF ND L + ++ ++TGPNMGGKSTF+R Sbjct: 588 ETCIKIHAGRHPVVEALNK----APFTPNDTFLDPQH-----RMAIITGPNMGGKSTFMR 638 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q ALI ++A GSYVPA A +G +D++F+R+GSAD+L++G+STFMVEM ET+ IL+ AT Sbjct: 639 QTALISLLAYCGSYVPAKSAKLGSIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHAT 698 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA 788 +QS V++DE+GRGT+T DGLS+AWA + L + +C L ATH+ ELT+LS S N Sbjct: 699 SQSLVLMDEVGRGTSTYDGLSLAWACVLDLTKRVKCLCLFATHYFELTELS-SETGIDNY 757 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN-- 846 + + N +I LHKV G A S+G+QV KLAG+P VI A LK EK H + Sbjct: 758 HVTAQELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLKILEKQQHQHFQ 817 Query: 847 ---QKDM-RLYYPEIQTKESKNNLSKND-KLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 Q D+ EI+T+ + + + + +++D+++P AL+ LY++KA Sbjct: 818 NTVQNDLFSSIEHEIETQVVEKIVEVEVASPALALLHQIDVDDLTPRQALEQLYSLKA 875 >gi|221633094|ref|YP_002522319.1| DNA mismatch repair protein MutS [Thermomicrobium roseum DSM 5159] gi|221157200|gb|ACM06327.1| DNA mismatch repair protein MutS [Thermomicrobium roseum DSM 5159] Length = 884 Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust. Identities = 316/902 (35%), Positives = 500/902 (55%), Gaps = 62/902 (6%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 L + STP+ +QY+EIK PD+L+ +R+GDFYELF DDA +ASR L I LT R Sbjct: 17 LSSGVAVSTPIRKQYLEIKRQVPDALLLFRLGDFYELFDDDAEVASRILDIALTSRDLGK 76 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G+ +PM G+P H A YI KL+ G+R+A+C+QI +P ++LV R + R++T G Sbjct: 77 GQRVPMAGIPAHAAEPYIAKLVAAGYRVALCDQIGTP------DGRNLVERRITRILTRG 130 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLIS-------DIM 190 T+TE +L + Y+ AV + +A+ D+STG F + ++L +++ Sbjct: 131 TITEPAMLDARRNTYIAAVLLESSRAGLAYADLSTGEFAATEWVAEQLEELRAAVERELL 190 Query: 191 RIDPREIIFSEKELSHAEYKSLFETLGN-VAVAQPNVFFDHSISESR--IADYYNITTVD 247 RI P E++ A + + G V + + +H E+R + +++ + T+ Sbjct: 191 RIAPAELVLP------AGRRGVIGVEGAAVTELEERAWREH---EARRVLHEHFGVETLA 241 Query: 248 TFGSFSQ-VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL 306 +FG + AA A + Y+ TQ+ P + S + +D+ R NLE+L + Sbjct: 242 SFGLADRPAALRAAGALLGYLLDTQVGQLPQLDDLVVYQTDSFMTLDAVTRRNLELLESA 301 Query: 307 SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK 366 G R SL+ +D + T G RL ++ PL D I R + + ++ ++ + Sbjct: 302 RGERAHSLVSVLDRTETPMGARLLRRWLSQPLLDVGAIRQRQERVAALVEETLVRARLGI 361 Query: 367 ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK 426 +L D+ R +R+ G P+++ + + I + + PE + L Sbjct: 362 LLAGVADLERLANRVLTGHVTPRELRQLGHSLARLPEIAEIAGRR--PE-----LAPLSA 414 Query: 427 LPQSL--EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAE 484 LP L + + S + +D P G +R G LDE R ++ IASL+ + E Sbjct: 415 LPDLLPAARLIESAIVEDPPPSLGQGHVIRAGFAPELDELRERARSAREWIASLEQRERE 474 Query: 485 ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLE 544 T I++LK+ +N GY+IEV+ ++ ++ D + K QT+ R+ T EL + E Sbjct: 475 RTGIRSLKVGYNKVFGYYIEVSHANRHLVPPDYQRK------QTLVGAERYVTPELREFE 528 Query: 545 NRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP 604 + + A +E E + + + + + A+Q++A +D+ ALA +A ++ Y RP Sbjct: 529 SMVLQAEERIAALEEEVYRRVVKELASCAAQIRRAAQLVAELDVYRALAEVAVDRRYVRP 588 Query: 605 IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 ++D ST ++ GRHP+VE TL+ + F++ND L D S ++ +LTGPNM GKS Sbjct: 589 VVDESTVLEIRGGRHPVVETTLE---AGRFVSNDARL----DTESDQIVILTGPNMAGKS 641 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 TFLRQ ALIV++AQ+GS+VPA +A IG+VD++F+R+G+ D++A+G+STFMVEM+ETASIL Sbjct: 642 TFLRQVALIVLLAQVGSFVPAEFARIGLVDRIFTRIGAQDDIAAGQSTFMVEMVETASIL 701 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSL 782 QAT +S V+LDE+GRGT+T DGL+IA A +EYLH R CR L ATH+HELT+L + L Sbjct: 702 RQATLRSLVVLDEVGRGTSTYDGLAIARAVVEYLHNHPRLGCRTLFATHYHELTELERVL 761 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 R N + V + + ++FLH+V+ G AD SYGI V +LAGLP+ V+ RA +IL+ E Sbjct: 762 PRVRNYRMDVLEEGDRVVFLHRVVRGGADKSYGIHVAQLAGLPHAVVRRAREILQELESA 821 Query: 843 YHHNQKDMRLYYPEIQTKESKNNLSKNDKLF------VEKIKCLNLDEMSPLTALKTLYA 896 R Q+ + L+ LF +E+++ L LD M+PL AL TLY Sbjct: 822 RSGEHTRRR------QSMAKEVPLTIQLTLFSPPHPVLERLRSLELDGMTPLEALTTLYE 875 Query: 897 VK 898 ++ Sbjct: 876 LQ 877 >gi|301064320|ref|ZP_07204754.1| DNA mismatch repair protein MutS [delta proteobacterium NaphS2] gi|300441599|gb|EFK05930.1| DNA mismatch repair protein MutS [delta proteobacterium NaphS2] Length = 871 Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust. Identities = 311/894 (34%), Positives = 506/894 (56%), Gaps = 53/894 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++Q++ IK PD+++F+RMGDFYE+FF+DA +A++ LGITLT RG + GK +PMCG Sbjct: 5 TPMLKQFMGIKDAFPDAILFFRMGDFYEMFFEDAQVAAKILGITLTSRGSYNGKKVPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H YI KL++ G ++A+CEQ+E P + K +V+R VVR+VTPG+L +++ Sbjct: 65 IPHHAYQSYIGKLVESGWKVAVCEQVEDP-----KAAKGIVKREVVRVVTPGSLVDEKEF 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSN-HDRLISDIMRIDPREIIFSEKEL 204 + ++ A+ + +A D+STG F+++ N + + ++ RI P E++ SE++ Sbjct: 120 DQKSNLFMAALWGENGVYGLAHADLSTGEFRLTEINSFEETLEELGRIAPAELLLSERD- 178 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK-TAAAAA 263 ++L + + A+ F+ ++ + D +++ ++ FG + TAA A Sbjct: 179 QETRPEALSKYRVEILDAET---FEPDKADELLKDQFSVRSLSGFGCENMPGGITAAGAL 235 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDYSI 322 ++Y+++TQ P I + + +D++ ++LE+L+T+ G S + SL + +D S+ Sbjct: 236 VAYLRETQKGFPPHIKEIITYHMGEFMVLDASTCTHLELLKTIRGQSAKGSLFQVLDRSV 295 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G RL I+ PL +I RL ++ +P L ++ L D+ R R+ Sbjct: 296 TPMGSRLLKNWISYPLVHVKRIQERLAAVQRLTDDPALRQDLRNELSEVYDMARLNGRIA 355 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVE-KLKKLPQSLE--KTLSSML 439 + R +D+ ++ +IL L D L G+ L +L L+ ++S++ Sbjct: 356 MKRANARDLLALKS------SILRLPAVKD---ALSGSTSILLSRLASKLDVLDDVASLI 406 Query: 440 SDDL----PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + + P ++GG +R+G LD +L K IA T I +LK+ Sbjct: 407 GESIHEEPPVSIKEGGIIREGYSEELDRLANLSRDGKSWIAGFAASEKARTGINSLKVGF 466 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+IE++ ++ +++ +D +I +QT+ N R+ T +L + E + A + Sbjct: 467 NKVFGYYIEISKANLNLVPED------YIRKQTLVNGERYITEDLKEKEGEVLGAEEKRV 520 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E E FE + ++I ++ + +++IA ID L+ A+ +Y RP ++ + + + Sbjct: 521 ALEFEIFEKIRSSISLENRRISETTEIIAQIDAIAGLSETAERNHYTRPEMNETADLAIL 580 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP++E+T+K + F+ ND L D ++ +LTGPNM GKST LRQ AL V+ Sbjct: 581 QGRHPVIEQTVKGEE---FVPNDIHL----DARQQQVMILTGPNMAGKSTILRQAALTVL 633 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQMGS+VPA A IGIVD++F+RVG++D+LA GRSTFMVEM ETA+IL +T +S V+L Sbjct: 634 MAQMGSFVPAEKAKIGIVDRIFTRVGASDDLAGGRSTFMVEMNETANILRHSTPRSLVVL 693 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 DEIGRGT+T DGLSIAWA E LH+ R L ATH+HELT+L + +R N + V Sbjct: 694 DEIGRGTSTYDGLSIAWAVAEALHDRGGQGVRTLFATHYHELTELVATKERVKNFNIAVR 753 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE---------KLYH 844 + N+ I FL K++PG SYGIQV ++AGLP +VI RA +ILK E Sbjct: 754 EWNDNIFFLRKLVPGGTSRSYGIQVARIAGLPESVIERAMEILKNLEGDEIDETGKPRLA 813 Query: 845 HNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 H +K + PE T + D+ + ++ L++D M+PL AL L +K Sbjct: 814 HTKKRKKKDVPE-NTMVQLDLFGSRDRELRKWVENLDIDNMTPLDALIALNDLK 866 >gi|171910204|ref|ZP_02925674.1| DNA mismatch repair protein [Verrucomicrobium spinosum DSM 4136] Length = 837 Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust. Identities = 303/842 (35%), Positives = 485/842 (57%), Gaps = 47/842 (5%) Query: 24 SSTPMMRQYIEIKSINP-DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 ++TPMM+QY+ ++ P D L+ +R+GDFYE+FF+DA A+ L + LTKR IP Sbjct: 6 AATPMMKQYLAMRRELPADVLLLFRLGDFYEMFFEDAKTAAGILNVALTKR-----NGIP 60 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP H A YI +LI+ G R+AI EQ P+ K LV R V +++ GT+T+ Sbjct: 61 MCGVPHHAAQGYIARLIRAGRRVAIGEQTADPVPGK------LVPREVSEIISAGTVTDG 114 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISD-IMRIDPREIIFSE 201 + L + ++YL A+ R ++ +A++D +TG F+++ + +SD + RI P E++++E Sbjct: 115 RYLDASRAHYLAAIWREGKKFGLAYVDHTTGEFEVAEFDSANALSDELTRIMPSELLYAE 174 Query: 202 KELSHAEYKSLFETLGNVAVAQ--PNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 E L +G AQ F H + + ++ + ++D +G + Sbjct: 175 ------EQSELLAEVGGSKGAQVCEGYLFLHDQAVHSLVQHFKVQSLDGYGCTHLTAAIS 228 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQ---STLFIDSAARSNLEILRTLSGSREQSLLK 316 AA AI + Q+ + + + +R + ++ID+A++S+LE++ + G+ E +LL Sbjct: 229 AAGAIMQYLQFQL--RKDVSHIKRLRVAVPYEGVWIDAASQSHLELVNSRGGT-EHTLLH 285 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +++ + T G R + PL + ++ R D I +Q P+L++ + + K D+ R Sbjct: 286 SLNRTCTPMGARKLRRWVLHPLRNLQQLIARQDLIAALLQEPMLLSQSRDLFKDIRDLER 345 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINI---LNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + RL G G +D+ + + + I L + L E+L G + L ++ +EK Sbjct: 346 TAGRLSQGSGNGRDLLALAQALLAVPAIKVLLEELPRTPLAEDLMGQMRDLTQMAAEMEK 405 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 +++++ P ++GG R+G LDE RS Q + +A LQ E T IK+LKI Sbjct: 406 ----VITEEPPATIKEGGIFREGFSPLLDELRSASTQGREWMARLQNDEIERTGIKSLKI 461 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 K+N GYFIE+T S+ + KD ++ +QT +N RF T EL +E++I A Sbjct: 462 KYNAVFGYFIEITKSNLDAVPKD------YVRKQTTANGERFITDELKRMEDKILGADEK 515 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 A +E E F L +A + E++ ++ IA +D+ +LA A+ NY RP+++ + N Sbjct: 516 AKALEYEEFVKLRSAAMAHLEAIQETAEAIATLDVLASLAETARLFNYTRPVLNETRNLF 575 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +DGRHP++++ L + + F+ ND L + ++ ++TGPNM GKST++RQ AL+ Sbjct: 576 FRDGRHPVLDQNL---AGEKFVPNDTTL----EPAENRVLIITGPNMAGKSTYIRQVALL 628 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MAQ+GSY+P + A +G+VD++F+R+G++D+L+ G+STFMVEM ETA ILN AT+QS V Sbjct: 629 TLMAQIGSYLPVASAEVGLVDRIFTRIGASDDLSRGQSTFMVEMNETALILNNATDQSLV 688 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ILDEIGRGT+T DGLSIAW+ E+LH R L ATH+HELT L+ + N + V Sbjct: 689 ILDEIGRGTSTFDGLSIAWSVAEHLHNDIGSRTLFATHYHELTVLAHTCSGVKNYNVAVK 748 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 + N IIFL K+I G A+ SYGIQV +LAGLP V+ RA IL+ E + N+ L Sbjct: 749 EWNHQIIFLRKIIAGSAEKSYGIQVARLAGLPEKVLHRARHILERLEAGHPPNEDAAALD 808 Query: 854 YP 855 P Sbjct: 809 EP 810 >gi|331091141|ref|ZP_08339983.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium 2_1_46FAA] gi|330405363|gb|EGG84899.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium 2_1_46FAA] Length = 883 Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust. Identities = 309/892 (34%), Positives = 509/892 (57%), Gaps = 39/892 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+E+K D ++FYR+GDFYE+FFDDA+ AS+ L +TLT + + + PMCG Sbjct: 5 TPMMQQYVEMKKQYQDCILFYRLGDFYEMFFDDAVTASQELELTLTGKNCGMEERAPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H Y+ +L+ G+++AICEQ+E P AK +V+R VVR+VTPGT Q L Sbjct: 65 VPYHAVEGYLTRLVSKGYKVAICEQVEDPKVAK-----GIVKREVVRIVTPGTNLNTQSL 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREIIFSEK-E 203 + +NY+M + I + ++ DISTG + ++ + R L+ +I + P EII +E Sbjct: 120 DESKNNYIMCIVYIADRYGLSVADISTGDYFVTELDTGRKLLDEIAKFAPSEIICNEPFY 179 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAA 262 +S + L LG + +FD ++ + +++ +++++ G A A Sbjct: 180 MSGLDIDDLKNRLGIAIYSLDAWYFDDAMCTKILKEHFKVSSLEGLGLGDYNCGVIGAGA 239 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYS 321 + Y+ +TQ + + +DS+ R NLE+ TL +++ SLL +D + Sbjct: 240 LLKYLYETQKTTLSHLTGIISYTTGKYMLLDSSTRRNLELCETLREKQKRGSLLWVLDKT 299 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G R + PL + I RLD++ N I I++ L D+ R +S++ Sbjct: 300 KTAMGARTLRSYVEQPLINKEDILARLDAVGELKDNAIAREEIREYLTPVYDLERLISKI 359 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 P+D+ + + +I ++ +D+ L ++ + + L + + S + + Sbjct: 360 TYQSANPRDLTAFQSSLAMLPHIK--YILSDMTSPLLMSLYRELDTLEDLCELVQSAIKE 417 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + P ++GG ++DG DA +D+ R+ + + K +A L+ + E+T IKNLKIK+N GY Sbjct: 418 EPPLAMKEGGIIKDGYDAEVDKLRNAKTEGKTWLAELEAEEREKTGIKNLKIKYNKVFGY 477 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 ++EVT+S ++ D + +QT++N R+ L +LE+ I A + +E E Sbjct: 478 YLEVTNSYKELVP------DYYTRKQTLANAERYIIPRLKELEDTILGAEDKLYALEYEI 531 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 + + + I ++ + ++ IA ID+ +LA++A+ NY RP I+ +K+GRHP+ Sbjct: 532 YCKIRDKIADEVVRIQKTAKAIAKIDVFASLALVAERNNYVRPKINEKGVIDIKNGRHPV 591 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VEK + FIAND L D ++ ++TGPNM GKST++RQ ALIV+MAQ+G+ Sbjct: 592 VEKMIPNDM---FIANDTLL----DDKKNRVSIITGPNMAGKSTYMRQTALIVLMAQIGT 644 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA A++GIVD++F+RVG++D+LASG+STFMVEM E A+IL ATN+S +ILDEIGRG Sbjct: 645 FVPAESANVGIVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATNRSLLILDEIGRG 704 Query: 742 TATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 T+T DGLSIAWA +E++ + L ATH+HELT+L + +N + V + + I Sbjct: 705 TSTFDGLSIAWAVVEHISNAKLLGAKTLFATHYHELTELEGKIDSVNNYCIAVKEKGDDI 764 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF-EKLYHHNQKDMRLYYPEIQ 858 +FL K++ G AD SYGIQV KLAG+P +VI RA +I+ E KD+++ E + Sbjct: 765 VFLRKIVKGGADKSYGIQVAKLAGVPESVILRAKEIVSELSEADITTRVKDIKIQGQESK 824 Query: 859 TKESKNNLSKND----KLF--------VEKIKCLNLDEMSPLTALKTLYAVK 898 + + + D LF +++++ L++ M+P+ AL T+Y ++ Sbjct: 825 ARTKQKKYDEVDLAQMSLFDTVKDDDVLKELEELDVSRMTPMDALNTIYRLQ 876 >gi|148826651|ref|YP_001291404.1| DNA mismatch repair protein MutS [Haemophilus influenzae PittEE] gi|166232122|sp|A5UE20|MUTS_HAEIE RecName: Full=DNA mismatch repair protein mutS gi|148716811|gb|ABQ99021.1| DNA mismatch repair protein [Haemophilus influenzae PittEE] Length = 861 Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust. Identities = 314/889 (35%), Positives = 496/889 (55%), Gaps = 44/889 (4%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 EEN + TPMM+QY+++K+ NPD+L+FYRMGDFYELF+DDA A+ L I+LTKRG+ G Sbjct: 4 EENFQQHTPMMQQYLKLKAENPDTLLFYRMGDFYELFYDDAKKAAALLDISLTKRGQSAG 63 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM G+P H Y+ KL+++G +AICEQI P +K V R +VR+VTPGT Sbjct: 64 QPIPMAGMPYHAVEGYLAKLVQLGESVAICEQIGDP-----ATSKGPVERQIVRIVTPGT 118 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N + AV + + ++ +A +D+++G F++ ++ + L +++ RI P E+ Sbjct: 119 VSDEALLPERQDNLIAAVYQEKEKFGLATLDMTSGRFQLCEPADKETLRAELQRIVPVEL 178 Query: 198 IFSEK--ELSHAEY-KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 ++ E+ E++ E+ K L +P F+ S + + + + + FG Sbjct: 179 LYCEEFNEMAAIEHCKGLRR--------RPIWEFELSTAITLLNRQFGTKDLRAFG---- 226 Query: 255 VEKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS 309 VEK+ AA + Y K+TQ P I Q + +D+A R NLE+ + LSG Sbjct: 227 VEKSPLGLSAAGCLLQYAKETQRTALPHIQSISLIQNQDCIQLDAATRRNLELTQNLSGG 286 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 E +L +D +T G RL I P+ D K+ R +I + N L++ +Q L+ Sbjct: 287 TENTLASVLDKCVTPMGSRLLKRWIHQPIRDVEKLKQRQQAIAEIL-NFDLVDELQPYLQ 345 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 D+ R L+R+ + P+D+ +R + I L ++ P L ++ + Sbjct: 346 LVGDMERILARVALRSARPRDLTRLRTALEQ-IPALRTIVQQKTPPFLTALFSQIADFSE 404 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 + L L + P RDGG + +G + LDE R L D + + + +L+ + E T I Sbjct: 405 QCD-LLQRALIETPPLLIRDGGVIAEGYNTELDEWRMLSDGATQYLENLEKRERESTGID 463 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LKI N GY+I+++ A ++ ++ RQT+ N R+ EL + E+++ Sbjct: 464 TLKIGFNAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKEYEDKVLK 517 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 + +AL +E + ++ L + ++ +L AS ++ +D+ + LA A NY P + Sbjct: 518 SKGAALALEKQLYDELFDLLLPHLGALQLASLALSELDVLVNLAERADTLNYVMPTFCDE 577 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 + +++GRHP+VE+ LK PFIAN +L+ ++ L ++TGPNMGGKST++RQ Sbjct: 578 VSVKIENGRHPVVEQVLK----DPFIANPVELN-----HNRHLLIITGPNMGGKSTYMRQ 628 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI ++A +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT Sbjct: 629 TALITLLAYIGSFVPADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATE 688 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 QS V++DEIGRGT+T DGLS+AWA E+L + R L ATH+ ELT L + L+ N Sbjct: 689 QSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLEGIVNIH 748 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 L + N I F+H V G A SYG+ V LAG+P +VI A L EK H+ Sbjct: 749 LDALEHNNSIAFMHAVQDGAASKSYGLAVAALAGVPQSVIKLAKQKLTQLEKNSSHSADQ 808 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E + + + E I+ L+ D++SP AL LY +K Sbjct: 809 QIQALREANHNQGELLFEQETDALREAIEKLDPDDLSPKQALAYLYQLK 857 >gi|315633343|ref|ZP_07888634.1| DNA mismatch repair protein MutS [Aggregatibacter segnis ATCC 33393] gi|315477843|gb|EFU68584.1| DNA mismatch repair protein MutS [Aggregatibacter segnis ATCC 33393] Length = 866 Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust. Identities = 321/900 (35%), Positives = 487/900 (54%), Gaps = 62/900 (6%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 +EN + TPMM+QY+++K+ NPD L+FYRMGDFYELF+DDA AS L I+LTKRG+ G Sbjct: 4 KENFEQHTPMMKQYLQLKAENPDILLFYRMGDFYELFYDDAKRASALLDISLTKRGQSAG 63 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM GVP H Y+ KL+++G +AICEQI P AK V R +VR+VTPGT Sbjct: 64 QPIPMAGVPYHAVEGYLAKLVQLGESVAICEQIGDPNTAK-----GPVERQIVRIVTPGT 118 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREI 197 ++++ LL N + AV + + +A +D+++G F++ L +++ RI P E+ Sbjct: 119 VSDEALLPERQDNLIAAVYQENDHFGLATLDMTSGRFQLCEPQSKADLQTELQRIAPVEL 178 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 ++ E A++ + G +P F+ + ++ +N + FG VEK Sbjct: 179 LYCE---DFADFHLIEHAKG--LRRRPIWEFELKTAIQQLCHQFNTKDLRGFG----VEK 229 Query: 258 T-----AAAAAISYIKKTQMVNKPTIG----YPEREDIQSTLFIDSAARSNLEILRTLSG 308 AA + Y ++TQ P I E+IQ +D+A R NLE+ + L+G Sbjct: 230 AILGLCAAGCLLQYARETQRTALPHIQSIHLIQHSENIQ----LDAATRRNLELTQNLAG 285 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKIL 368 E +L +D +T G RL I P+ D K+ R +I ++ L+ +Q L Sbjct: 286 GTENTLAAVLDKCVTPMGSRLLKRWIHQPICDVEKLTQRQQAIGAILEQD-LVADLQPYL 344 Query: 369 KSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP 428 + D+ R L+R+ + P+D+ +R + ++KN L E+ K+ L Sbjct: 345 QQVGDMERILARVALRTARPRDLTRLRTALEQ-----IPYIKNRLAEKTSA---KMAALY 396 Query: 429 QSLEK------TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 Q L L + D P RDGG + G +A LDE R L D + R + L+ + Sbjct: 397 QQLGDFSAQFDLLQRAIIDSPPVLIRDGGVIAAGYNAELDEWRELADGATRYLEDLEQRE 456 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T I LKI N GY+I+++ A ++ ++ RQT+ N R+ EL Sbjct: 457 RESTGIDTLKIGFNAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKT 510 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ A ++L +E + ++ + + ++ +L +A +D+ LA A+ NY Sbjct: 511 YEDKVLKAKGASLALEKQLYDEIFDQLLPHLGNLQLTGLALAELDVLTNLAERAESLNYV 570 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P T +++GRHP+VE+ LK+ PFIAN L+ ++TGPNMGG Sbjct: 571 APTFSAQTGIHIQNGRHPVVEQVLKE----PFIANPTALT-----EQQHFLIITGPNMGG 621 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA MGS+VPA A IG VD++F+R+G++D+LASGRSTFMVEM E A+ Sbjct: 622 KSTYMRQTALITLMAYMGSFVPADSAVIGPVDRIFTRIGASDDLASGRSTFMVEMTEMAN 681 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+QAT++S V++DEIGRGT+T DGLS+AWA E+L + R L ATH+ ELT L + + Sbjct: 682 ILHQATDKSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKIRSLTLFATHYFELTVLPEQV 741 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + N+ I F+H V G A SYG+ V LAG+P VI A L EKL Sbjct: 742 QGIGNIHLDAIEHNDTIAFMHAVQKGAASKSYGLAVAALAGVPQQVIKLAKQKLAQLEKL 801 Query: 843 YHHNQ----KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 N +D+RL +N ++ + ++ L+ DE+SP AL LY +K Sbjct: 802 SQQNTNQQIQDLRLLNQRQGELAFDQAEDENKEMLLNMLQELDPDELSPKQALAYLYQLK 861 >gi|239995696|ref|ZP_04716220.1| DNA mismatch repair protein(MutS) [Alteromonas macleodii ATCC 27126] Length = 873 Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust. Identities = 315/905 (34%), Positives = 490/905 (54%), Gaps = 71/905 (7%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MMRQY+ IK+ +P+ L+FYRMGDFYELF+DDA A+ L I+LT RGK G+ IPM GVP Sbjct: 1 MMRQYLTIKAQHPNILLFYRMGDFYELFYDDAKKAAELLDISLTARGKSGGEPIPMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H Y+ +L+K+G +AICEQ+ P +K V R V R+VTPGT+T++ LL Sbjct: 61 YHAVESYLSRLVKMGESVAICEQVGDPATSK-----GPVERAVQRIVTPGTVTDEALLEE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREIIFSEKELSH 206 N L AV + +A +D+++G F + + D L+++I RI+P E+++ E Sbjct: 116 RRDNILAAVCGHSMHYGLATLDVTSGRFVVFECDSDESLLAEIQRINPAELLYPEG---- 171 Query: 207 AEYKSLFETLGNVA-----VAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT--A 259 FE+L V +P FD + ++ + T+D FG V K A Sbjct: 172 ------FESLALVENRKGLRRRPEWEFDIDTATEQLNAQFETKTLDGFG-IKGVTKGLGA 224 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A + Y+K TQ P I + E S + +D+A R NLE+ LSG +E +L +D Sbjct: 225 AGCVLQYVKDTQRTALPHIRRIQTEQQDSRVQLDAATRRNLELTHNLSGGQENTLFSVMD 284 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINP--IQKILKSSPDVPRS 377 + T G R+ I SPLTD ++++RLD++ FI + +P I+ LK D+ R Sbjct: 285 TTTTAMGSRMLQRVIHSPLTDQHELHSRLDAVETFIND----DPEDIRTALKHIGDIERI 340 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 ++RL + P+D A +++ + ++ + + D + +R E + P+ L+ L+ Sbjct: 341 MARLALRSARPRDFARLKNAFNALPDLQDALARFDTGQ-IRSISETIGTYPE-LQALLND 398 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + D+ P RDGG + +G +A LDE R L + + +++ + E T I LK+ +N Sbjct: 399 AIIDNPPMVIRDGGVIAEGYNAELDELRKLSQGATDYLDAMEQRERERTGISTLKVGYNK 458 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 G+FIE++ +++++ + +I RQT+ N R+ T EL + E+++ ++ +AL + Sbjct: 459 VHGFFIEISRANSALAPAE------YIRRQTLKNTERYITPELKEHEDKVLSSQGAALAL 512 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + +E L + +L + +A +D+ A A ++ RP + G Sbjct: 513 EKQLYEALFDNFAPHLNNLIETAAALAKLDVLCCFAERAVSLDWYRPHLSQECALTYDAG 572 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE +K PFIAN L ++ ++TGPNMGGKST++RQ ALI ++A Sbjct: 573 RHPVVENVMKD----PFIANPLQLDTER-----RMLIITGPNMGGKSTYMRQTALIALLA 623 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GS+VPA AHIG +D++F+R+G++D+LASGRSTFMVEM ETA+ILN AT S V++DE Sbjct: 624 CIGSFVPAENAHIGKLDRIFTRIGASDDLASGRSTFMVEMTETANILNNATENSLVLMDE 683 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGT+T DGLS+AWA YL + L ATH+ ELT+L ++ N L + + Sbjct: 684 IGRGTSTYDGLSLAWACASYLAKQLNAYTLFATHYFELTELPETQSGVVNVHLDAMEFED 743 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD-------- 849 I F+H V G A S+G+QV +LAG+P VI A L E + + Sbjct: 744 TIRFMHTVSEGAASKSFGLQVAQLAGVPKAVIKAAQQKLAVLESSHLMTSTEDGSEKAND 803 Query: 850 ---------MRLYYPEIQTKESKNNLSKNDKLF-------VEKIKCLNLDEMSPLTALKT 893 + K + N + + LF VE ++ L+ DE+SP AL Sbjct: 804 ESFVAKSSVKGVNKTSASVKVTSNTKGQAEMLFPDKPHPVVEALENLSPDELSPRQALDL 863 Query: 894 LYAVK 898 +Y +K Sbjct: 864 IYTLK 868 >gi|167623165|ref|YP_001673459.1| DNA mismatch repair protein MutS [Shewanella halifaxensis HAW-EB4] gi|189083191|sp|B0TK13|MUTS_SHEHH RecName: Full=DNA mismatch repair protein mutS gi|167353187|gb|ABZ75800.1| DNA mismatch repair protein MutS [Shewanella halifaxensis HAW-EB4] Length = 859 Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust. Identities = 319/885 (36%), Positives = 488/885 (55%), Gaps = 34/885 (3%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 + L+ TPMMRQY+ +K+ +PD L+FYRMGDFYELF++DA AS LGI+LT RGK G Sbjct: 7 QGLEKHTPMMRQYLTLKAQHPDMLLFYRMGDFYELFYEDAKRASELLGISLTARGKSGGD 66 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H Y+ KL+++ +AICEQI P +K V R VVR+VTPGTL Sbjct: 67 PIPMAGLPYHAVEGYLAKLVQLRVSVAICEQIGDPATSK-----GPVERKVVRIVTPGTL 121 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREII 198 T++ LL N L A+ + +T + A +D+++G F I+ +N + L +++ R +P E++ Sbjct: 122 TDEALLQERQDNLLAALYQGKTGYGYATLDVASGRFVITELANTEALEAELQRTNPAELL 181 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 +SE + S SL + N +P FD+ + + + + FG +++ Sbjct: 182 YSE-DFSEM---SLIAAI-NGTRRRPEWEFDYDTCHRLLLNQFGTKDLKGFGIEDARLSL 236 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA + Y+K TQ P I R + ++ +D+A R NLE+ L G RE +L Sbjct: 237 QAAGCLMQYVKDTQRTALPHINSIVRFNQSDSIVLDAATRRNLELTVNLQGGRENTLASV 296 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D ++T G R+ + PL D I R SI + N + + LK+ D+ R Sbjct: 297 LDNTVTPMGSRMLQRWLHQPLRDHDIIRARQVSIEELLGNAN-YEILSEDLKAIGDIERI 355 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 +R+ + P+D A +R + + + L L L+ + + + P LE LS Sbjct: 356 TTRIALRNARPRDFARLRQAL-ALLPQLQQTLTQAAAPHLKYLSQVIGEFPDELE-LLSR 413 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + D+ P RDGG +R+G + LD+ R L + + + L+ + ++T I LK+ +N Sbjct: 414 AVVDNPPMLIRDGGVIREGYNEELDQWRKLSEGATDYLHELEAREKQQTGISTLKVGYNR 473 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IEV+ + ++ + RQT+ N R+ EL + E ++ ++ AL + Sbjct: 474 VHGYYIEVSRRESDLVPLS------YQRRQTLKNTERYIIPELKEHEEKVLSSQGRALAL 527 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + +E L + I+ + L + ++ A +D+ A A+ NY P + + ++ G Sbjct: 528 EKQLWEQLFDLILPKLHELQDFARASAELDVLCNFAERAESLNYHCPDLSTAPGIQIEAG 587 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE Q S PFIAN L+ N K+ ++TGPNMGGKST++RQ ALI +MA Sbjct: 588 RHPVVE----QVSQSPFIANPVTLN-----NERKMLIVTGPNMGGKSTYMRQVALITLMA 638 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +G YVPA +A IG VD++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V++DE Sbjct: 639 HIGCYVPAEHAVIGPVDRIFTRIGASDDLASGRSTFMVEMTETANILHNATPNSLVLMDE 698 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGT+T DGLS+AW+ EYL + + L ATH+ ELT L + L N L + + Sbjct: 699 IGRGTSTYDGLSLAWSAAEYLAKHLQAMTLFATHYFELTQLPELLSNVENVHLDAVEHGD 758 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 I+F+H V G A SYG+QV LAG+PN VIS A L E H ++ P Sbjct: 759 SIVFMHAVQEGAASRSYGLQVAALAGVPNCVISAAKHKLHQLES-RDHGKESCDAQQP-- 815 Query: 858 QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTL 902 ++S + + +E + LN DE++P AL LY +K L Sbjct: 816 -LQQSISFSAPTPSPALEALAKLNPDELTPRQALDYLYNLKKLAL 859 >gi|45645383|gb|AAS73291.1| DNA mismatch repair protein [Haemophilus influenzae] gi|301169424|emb|CBW29024.1| methyl-directed mismatch repair protein [Haemophilus influenzae 10810] Length = 861 Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust. Identities = 315/889 (35%), Positives = 496/889 (55%), Gaps = 44/889 (4%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 EEN + TPMM+QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG+ G Sbjct: 4 EENFQQHTPMMQQYLKLKAENPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGQSAG 63 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM G+P H Y+ KL+++G +AICEQI P +K V R +VR+VTPGT Sbjct: 64 QPIPMAGMPYHAVEGYLAKLVQLGESVAICEQIGDP-----STSKGPVERQIVRIVTPGT 118 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N + AV + + ++ +A +D+++G F++ ++ + L +++ RI P E+ Sbjct: 119 VSDEALLPERQDNLIAAVYQEKEKFGLATLDMTSGRFQLCEPADKETLRAELQRIAPVEL 178 Query: 198 IFSEK--ELSHAEY-KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 ++ E+ E++ E+ K L +P F+ S + + + + + FG Sbjct: 179 LYCEEFNEMAAIEHCKGLRR--------RPIWEFELSTAITLLNRQFGTKDLRAFG---- 226 Query: 255 VEKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS 309 VEK+ AA + Y K+TQ P I Q + +D+A R NLE+ + LSG Sbjct: 227 VEKSPLGLSAAGCLLQYAKETQRTALPHIQSISLIQNQDCIQLDAATRRNLELTQNLSGG 286 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 E +L +D +T G RL I P+ D K+ R +I + N L++ +Q L+ Sbjct: 287 TENTLASVLDKCVTPMGSRLLKRWIHQPIRDVEKLKQRQQAIAEIL-NFDLVDELQPYLQ 345 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 D+ R L+R+ + P+D+ +R + I L ++ P L ++ + Sbjct: 346 LVGDMERILARVALRSARPRDLTRLRTALEQ-IPALRTIVQQKTPPFLTALFSQIADFSE 404 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 + L L + P RDGG + G +A LDE R L D + + + +L+ + E T I Sbjct: 405 QWD-LLQRALIETPPLLIRDGGVIAKGYNAELDEWRMLSDGATQYLENLEKRERESTGID 463 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LKI N GY+I+++ A ++ ++ RQT+ N R+ EL + E+++ Sbjct: 464 TLKIGFNAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKEYEDKVLK 517 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 + +AL +E + ++ L + ++ +L AS ++ +D+ + LA A NY P + Sbjct: 518 SKGAALALEKQLYDELFDLLLPHLGTLQLASLALSELDVLVNLAERADTLNYVMPTFCDE 577 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 + +K+GRHP+VE+ LK PFIAN +L+ ++ L ++TGPNMGGKST++RQ Sbjct: 578 VSVKIKNGRHPVVEQVLK----DPFIANPVELN-----HNRHLLIITGPNMGGKSTYMRQ 628 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI ++A +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT Sbjct: 629 TALITLLAYIGSFVPADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATA 688 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 QS V++DEIGRGT+T DGLS+AWA E+L + R L ATH+ ELT L + L+ N Sbjct: 689 QSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLEGIANIH 748 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 L + N I F+H V G A SYG+ V LAG+P +VI A L EK ++ + Sbjct: 749 LDALEHNNTIAFMHAVQDGAASKSYGLAVAALAGVPQSVIKLAKQKLTQLEKNSSYSAEQ 808 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E + + + E I+ L+ D++SP AL LY +K Sbjct: 809 QIQALREANHNQGELFFEQETDALREAIEKLDPDDLSPKQALAYLYQLK 857 >gi|254230501|ref|ZP_04923874.1| DNA mismatch repair protein MutS [Vibrio sp. Ex25] gi|262393290|ref|YP_003285144.1| DNA mismatch repair protein MutS [Vibrio sp. Ex25] gi|151936973|gb|EDN55858.1| DNA mismatch repair protein MutS [Vibrio sp. Ex25] gi|262336884|gb|ACY50679.1| DNA mismatch repair protein MutS [Vibrio sp. Ex25] Length = 853 Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust. Identities = 308/888 (34%), Positives = 489/888 (55%), Gaps = 54/888 (6%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 + TPMM+QY+++K+ NP+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IP Sbjct: 5 QKHTPMMQQYLKLKAENPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGSSAGEPIP 64 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+T++ Sbjct: 65 MAGVPFHAVEGYLAKLVQLGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTVTDE 119 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSE 201 LLS N + A+ ++ A +D+++G F+++ + + +++ R PRE++F E Sbjct: 120 ALLSERVDNLIAAIYHHNGKFGYATLDVTSGRFQLTEPETEEAMTAELQRTAPRELLFPE 179 Query: 202 KELSHAEYKSLFETLGNVAVA-----QPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 FE + +A +P F+ ++ ++ + + FG + + Sbjct: 180 D----------FEPVHLMASRNGNRRRPVWEFELDTAKQQLNQQFGTKDLVGFGVEHASL 229 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA I Y+K TQ P I + ++ +D+A R NLEI + L+G + +L Sbjct: 230 GLCAAGCLIQYVKDTQRTALPHIRSLTFDHQDQSVILDAATRRNLEITQNLAGGTDNTLA 289 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D+ T G R+ + P+ +N RLD+I I+ L +Q LK D+ Sbjct: 290 AVLDHCATPMGSRMLKRWLHQPMRCIETLNNRLDAIGE-IKEQALFADLQPTLKQIGDIE 348 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT- 434 R L+RL + P+D+A +R+ ++ + ++ P + KL + +++ Sbjct: 349 RILARLALRSARPRDMARLRNAMQQLPELESVTASLTHP-----YLAKLAQYAAPIDEVC 403 Query: 435 --LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 L + ++ P RDGG + +G +A LDE R L D + + L+ E I LK Sbjct: 404 DLLERAIKENPPVVIRDGGVIAEGYNAELDEWRKLADGATEYLEQLERDERERHGIDTLK 463 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 + +NN G+FI+V+ + ++ ++ RQT+ N R+ EL + E+++ N+ + Sbjct: 464 VGYNNVHGFFIQVSRGQSHLVPP------HYVRRQTLKNAERYIIPELKEHEDKVLNSKS 517 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 AL +E + +E L + ++ E L N + ++ +D+ LA A +YCRP + Sbjct: 518 KALALEKQLWEELFDLLMPNLEKLQNLASALSQLDVLQNLAERADSLDYCRPTLVKDAGI 577 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 ++ GRHP+VE Q +++PFIAN +L+ + K+ ++TGPNMGGKST++RQ AL Sbjct: 578 HIQAGRHPVVE----QVTTEPFIANPIELN-----PARKMLIITGPNMGGKSTYMRQTAL 628 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 I +MA +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S Sbjct: 629 IALMAHIGSYVPAESAQIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSL 688 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 V++DEIGRGT+T DGLS+AWA+ E+L L ATH+ ELT+L L N L Sbjct: 689 VLMDEIGRGTSTYDGLSLAWASAEWLATQIGAMTLFATHYFELTELPNQLPNLANVHLDA 748 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 + + I F+H V G A SYG+ V LAG+P TVI A + L E+L ++ Sbjct: 749 VEHGDSIAFMHAVQEGAASKSYGLAVAGLAGVPKTVIKNARNKLSQLEQLGQNSDA---- 804 Query: 853 YYPEIQTKESKNNLS--KNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P + N LS + + ++ D+++P AL+ LY +K Sbjct: 805 --PRPSAVDVANQLSLIPEPSEIEQALSGIDPDDLTPRQALEELYRLK 850 >gi|86606675|ref|YP_475438.1| DNA mismatch repair protein MutS [Synechococcus sp. JA-3-3Ab] gi|123505746|sp|Q2JT35|MUTS_SYNJA RecName: Full=DNA mismatch repair protein mutS gi|86555217|gb|ABD00175.1| DNA mismatch repair protein MutS [Synechococcus sp. JA-3-3Ab] Length = 882 Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust. Identities = 313/870 (35%), Positives = 469/870 (53%), Gaps = 49/870 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+ Y+E+K P +++ YR+GDFYE+FF DA L SR L + LT R +PMCG Sbjct: 7 TPMMQHYVELKRQYPHAILLYRLGDFYEMFFQDAQLVSRELELVLTGREAGAIGRVPMCG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H + Y +L+ G+ +A+C+Q+E +AK LVRR V R++TPGT+ E++LL Sbjct: 67 IPYHAFDRYAAQLVAKGYALAVCDQMEPADQAK-----GLVRREVTRVITPGTVIEEELL 121 Query: 146 SPTDSNYLMAVARIR----TEWAIAWIDISTGIFKISTS-NHDRLISDIMRIDPREIIFS 200 +NYL A+ R+R T W +A+ DISTG F + ++L ++ R+ P EI+ Sbjct: 122 QARQNNYLAAIVRLRGSKQTVWGLAYADISTGEFWVCQGEGQEQLEQELARLQPAEILLP 181 Query: 201 EKE------LSHAEYKSLFETLGNVAVA-QPNVFFDHSISESRIADYYNITTVDTFGSFS 253 +E + + ++ G +P F+ + + + Y + +++ G Sbjct: 182 TEEGLGLGLMRPGDPQAPLGLPGQYTYTLRPAEPFELATARENLLQTYGLRSLEGLGCEG 241 Query: 254 -QVEKTAAAAAISYIKKTQ--------MVNKPTIGYPEREDIQSTLFIDSAARSNLEILR 304 + AA + Y+++TQ P + P + L +D+ R NLE+ + Sbjct: 242 LPLAIRAAGGLLHYLEETQKNLVQPSPQGGHPLLRPPRTYQLTDYLILDTQTRRNLELTQ 301 Query: 305 TL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINP 363 T+ G+ SLL +D S T GGR + PL D +I R D+I +++P L Sbjct: 302 TIREGAFVGSLLWVLDRSRTAMGGRTLRRWLLQPLRDPEQIRLRQDTIQELLESPSLRTR 361 Query: 364 IQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAV 421 + +L S D+ R +R+ G P+++ + + + L + P + L+ Sbjct: 362 LGSLLDSLYDLERLANRVASGTANPRELVALGSSLGKLPQLAELVAEAQTPLLQSLQQVD 421 Query: 422 EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLK 481 L L +E TL L P +GG +R G DA LD R +Q + IA L+ Sbjct: 422 PALVDLGHRIEHTL---LPSPPPVLT-EGGLIRPGVDAELDRLRQQVEQDRHWIAQLEKT 477 Query: 482 YAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELI 541 E T I LK+ N GY++ ++ + A + K+ +I +QT++N RF T EL Sbjct: 478 ERERTGIPTLKVGFNKAFGYYLSISRAKAQQVPKE------YIRKQTLTNEERFITPELK 531 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 + E RI A E E F L Q+ ++ +Q +A +D LA +A +Q Y Sbjct: 532 EKEARILTAQTEINQREYELFVQLRQEAGSQAAAIRQVAQTLAAVDALFGLAEVAVQQGY 591 Query: 602 CRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 RP+I I+++GRHP+VEK+L Q F+ N L P+ + L +LTGPNM Sbjct: 592 TRPVITADRRLIIEEGRHPVVEKSLPQGL---FVPNSVRLGSPHGPD---LIVLTGPNMS 645 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKST+LRQ LI I+AQMGS+VPA A +G+ D++F+R+G+ D+LA+G+STFMVEM ETA Sbjct: 646 GKSTYLRQIGLIQILAQMGSFVPARRAELGLCDRVFTRIGAVDDLATGQSTFMVEMNETA 705 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS 781 +ILN A +S V+LDEIGRGTAT DGLSIAWA EYL R R + ATH+HEL L Sbjct: 706 NILNHAGERSLVLLDEIGRGTATFDGLSIAWAVAEYLATQVRARTIFATHYHELNQLETL 765 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 L N + V + + IIFLH+V PG AD SYGI+VG++AGLP VI RA +L E+ Sbjct: 766 LPNVANFQVVVKELRDRIIFLHQVQPGGADRSYGIEVGRMAGLPQPVIERAKQVLALVEQ 825 Query: 842 LYHHNQKDMRLYYPEIQTKESKNNLSKNDK 871 H++ + L + +++ S NN K K Sbjct: 826 ---HSRIGLGLRS-QGKSRPSSNNPKKRFK 851 >gi|253988177|ref|YP_003039533.1| DNA mismatch repair protein MutS [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779627|emb|CAQ82788.1| dna mismatch repair protein muts [Photorhabdus asymbiotica] Length = 851 Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust. Identities = 314/887 (35%), Positives = 493/887 (55%), Gaps = 51/887 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E + TPMM+QY+ +K+ +PD L+FYRMGDFYELF+DDA A++ L I+LTKRG+ G Sbjct: 5 ETFDTHTPMMQQYLRLKAQHPDILLFYRMGDFYELFYDDAKKAAKLLDISLTKRGQSAGN 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H +Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGVPHHAVENYLAKLVQLGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTV 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 T++ LL N L A+ + A +D+++G F+IS + + +++++ R P E++ Sbjct: 120 TDEALLQERQDNLLAAIWHDNQGFGYATLDVTSGRFQISEMAEQETMVAELQRTRPVELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + E E+ +L E + +P F+ ++ ++ + + FG VEKT Sbjct: 180 YPES----FEHMALIEHCHGLR-RRPLWEFELDTAKQQLNLQFGTRDLVGFG----VEKT 230 Query: 259 A-----AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 A A + Y+K TQ P I E Q T+ +D+A R NLE+ + LSGS + + Sbjct: 231 ALALRAAGCLLQYVKDTQRTALPHIRGITMERQQDTVIMDAATRRNLELTQNLSGSTDNT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D +T G R+ + +P+ D + R +I + + + P L D Sbjct: 291 LASVLDLCVTPMGSRMLKRWLHAPVRDRQILENRQQAIATLQEIGLELQPF---LLQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSL 431 + R L+RL + P+D+A +R + +I + +D P ++L+ + + +L + L Sbjct: 348 LERVLARLALRSARPRDLARMRHAFQQLPDIHQIMDSSDSPYIKQLQKNIGRFDELQELL 407 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 EK + + P RDGG + G ++ LDE R+L D + + L+++ E+ I L Sbjct: 408 EKAIVEIP----PVLVRDGGVIAPGYNSELDEWRTLADGASNYLEQLEIREREKLGIDTL 463 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 K+ N GY+I+V+ + ++ ++ RQT+ N R+ EL + E+++ + Sbjct: 464 KVGFNGVHGYYIQVSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSK 517 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 +L IE +E L + ++ L +++ +A +D+ LA A+ NY P + + Sbjct: 518 GKSLAIEKALYEELFDLLLPHLAKLQASAEALAELDVLANLAERAETLNYVCPTLSDKPG 577 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 + GRHP+VE+ L S+PFI+N LS + +L ++TGPNMGGKST++RQ A Sbjct: 578 IQITGGRHPVVEQVL----SEPFISNPLSLS-----SQRRLLIITGPNMGGKSTYMRQAA 628 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LI ++A +GS+VPA A IG VD++F+RVG++D+LASGRSTFMVEM ETA+IL+ AT QS Sbjct: 629 LITLLAYIGSFVPAEKAVIGPVDRIFTRVGASDDLASGRSTFMVEMTETANILHNATEQS 688 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + L+ N L Sbjct: 689 LVLMDEIGRGTSTYDGLSLAWACAENLANRIKAMTLFATHYFELTTLPEKLEGVVNIHLD 748 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR 851 + + I F+H V G A SYG+ V LAG+P VI RA LK E L +H Sbjct: 749 AVEHGDTIAFMHSVQDGAASKSYGLAVASLAGVPREVIKRARQKLKELESLSNHATAS-H 807 Query: 852 LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + P++ L++ VE ++ LN D ++P AL+ +Y +K Sbjct: 808 VDTPQLAL------LTEEISPAVEALENLNPDSLTPRQALEWIYRLK 848 >gi|119476596|ref|ZP_01616906.1| DNA mismatch repair protein [marine gamma proteobacterium HTCC2143] gi|119449852|gb|EAW31088.1| DNA mismatch repair protein [marine gamma proteobacterium HTCC2143] Length = 855 Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust. Identities = 307/878 (34%), Positives = 482/878 (54%), Gaps = 32/878 (3%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY +IK+ +P+ LVFYRMGDFYELFFDDA LAS +GITLT RGK G+ IPM G Sbjct: 8 TPMMQQYFKIKAEHPNELVFYRMGDFYELFFDDAKLASELMGITLTARGKSGGEPIPMAG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H+A+ Y+ KL++ G +AICEQ P +K V R VVR+VTPGT++++ LL Sbjct: 68 IPFHSADGYLAKLVRHGQSVAICEQTGDPATSK-----GPVERQVVRVVTPGTISDEALL 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSEKEL 204 N L+AV ++ + + +A +DI +G F++ + ++S++ R+DP EI+ Sbjct: 123 EEHRDNLLVAVNQVNSRFGMATLDIGSGRFQVFEVEDVSAVLSELQRLDPAEILI----- 177 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAAAAA 263 H + + +P F+ +E + +N + FG + AA Sbjct: 178 -HDDINNEHILARTGVRRRPPWEFEQDTAERLLTQQFNTKDLTGFGCVGLNLAIAAAGCL 236 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 + Y ++TQ P I E + ++ +D+A R NLEI L+G + +L +D + T Sbjct: 237 LQYAQETQRTALPHIRSLTHERREDSVVLDAATRRNLEIDTNLTGGDKHTLQWVMDKTKT 296 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL + PL D+ + R D+I + N P ++ LK D+ R L+R+ + Sbjct: 297 AMGSRLLRRWLNRPLNDAAILVERQDAIRSLLHN-YQFEPFREGLKPVGDMERILARIAL 355 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 P+D++ + + + + +L D P L + K + L L ++D+ Sbjct: 356 RSARPRDLSRLAQSLAALPELQSLCAALDAP--LITTLAKTAGVYTELTDLLGRAITDNP 413 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P RDG + +G DA LDE R++ + + + L+ + E+T I LK+ +N GY+I Sbjct: 414 PVVIRDGSVIAEGYDAELDELRNISSNAGQFLVDLETREKEQTGINTLKVGYNRVHGYYI 473 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 E++ + + + +I RQT+ N RF T EL E++ +A + AL E ++ Sbjct: 474 EISKAQSH------NAPANYIRRQTLKNAERFITPELKVFEDKALSAKSRALTREKALYD 527 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L + EQ L + ++ +D+ LA A+ N RP + + ++ GRH +VE Sbjct: 528 ALLETLNEQLAELQATASALSELDVLGNLAERAENLNLERPEFNTTPLIQIEQGRHLVVE 587 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 + L + PFI ND + ++ ++TGPNMGGKST++RQ A+IV++A +GSYV Sbjct: 588 QVLDE----PFIPNDVAFD-----DQRRMLIVTGPNMGGKSTYMRQTAVIVLLAHIGSYV 638 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA A I +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V++DEIGRGT+ Sbjct: 639 PAKSATINLVDQIFTRIGSSDDLAGGRSTFMVEMTETANILHNATDKSLVLMDEIGRGTS 698 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DGLS+AWA+ YL + L ATH+ ELT L + + HN L ++ N+ I+FLH Sbjct: 699 TFDGLSLAWASAVYLATRVKAFTLFATHYFELTTLPEDYSQVHNVHLDATEHNDHIVFLH 758 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESK 863 + G A SYG+QV KLAG+P+ V+ A L + E Q ++ + Sbjct: 759 SIKEGPASKSYGLQVAKLAGMPDAVVQAAKHKLASLEA-PEGQQPHNGMHSSAAIAPQQP 817 Query: 864 NNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWT 901 + + V + + D++SP AL+ LY +K T Sbjct: 818 DMFTSTTHPAVTALADTDPDDLSPKQALEVLYQLKKLT 855 >gi|164688070|ref|ZP_02212098.1| hypothetical protein CLOBAR_01715 [Clostridium bartlettii DSM 16795] gi|164602483|gb|EDQ95948.1| hypothetical protein CLOBAR_01715 [Clostridium bartlettii DSM 16795] Length = 957 Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust. Identities = 299/820 (36%), Positives = 479/820 (58%), Gaps = 28/820 (3%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY + K PD ++F+R+GDFYE+FF+DA++AS+ L I LT + L + PMCG Sbjct: 9 TPMMKQYFDTKEKYPDCILFFRLGDFYEMFFEDAIVASKVLEIALTGKACGLEERAPMCG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H AN YI KL++ G+++AI EQ+E P AK +V+R V+R+VTPGT+ E LL Sbjct: 69 VPFHAANAYISKLVENGYKVAIGEQMEDPALAK-----GIVKREVIRVVTPGTVLEGNLL 123 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 +NYLM++ + ++++DISTG + D+LI +I ++ P EII ++ L Sbjct: 124 ENKKNNYLMSLYKENDNIGLSYVDISTGETNATVLKRDKLIEEIAKVSPSEIIIND--LD 181 Query: 206 HAEYKSLFETLGNVAVAQ--PNVFFDHSISESRIAD-YYNITTVDTFGSFSQVEKTAAAA 262 + + +L N+ + + D +I + +D Y + D G ++ + Sbjct: 182 YIKNLEAIASLSNIYLNTNFDEAYLDENILKQYFSDEYLSKVKFDENGLINR----SLCV 237 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYS 321 ++YI TQ I + + + +D RSNLE+ T+ +++ SLL +D + Sbjct: 238 LLNYIYNTQKQVTSNINNINVYNSSNYMVLDMFTRSNLELTETIRTKKKKGSLLHVLDKT 297 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T GGR+ + + PL D +I RLD I + L + +ILK+ D+ R ++ Sbjct: 298 STAMGGRMLRKYVEEPLVDKKRIQNRLDVIEEIKDDYSLRIDLIEILKNVYDIERICGKI 357 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 + PK++ +++ I + L +++ E L+ K++ L + ++L + Sbjct: 358 AFEKVTPKELINLKNSIEK-LPELKRRIEDSDAEILKNYAGKMETLDDIYDLIDRAILPE 416 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 T K DG ++ + L E R + +I ++ + E+T +K+LKI N GY Sbjct: 417 PSITIK-DGNIIQSSYNEELRELREVSTNGAFMIKEIENREKEKTGVKSLKIGFNKVFGY 475 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IE+T ++ + D D +I +QT+SN R+ T EL +E++I +A ++E E Sbjct: 476 YIEITKANLATANID----DSYIRKQTLSNAERYITEELKIIEDKILHAKEKIGVLEYEL 531 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 F + I + + + N +++IA ID+ + A +A NY +P I+++ +K+GRHP+ Sbjct: 532 FVQVRKYIYDNIDRIQNVAKIIANIDVFTSFATVADLNNYVKPNINDNNKLDIKNGRHPV 591 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE + +++ F+ ND LS +D+N + ++TGPNM GKST++RQ+A+IV+MA MGS Sbjct: 592 VENIVGEEN---FVPNDTYLS--DDENI--INIITGPNMAGKSTYMRQSAIIVLMAHMGS 644 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA +A I I D++F+RVG++D+L+SG+STFMVEM E + IL AT++SFVILDEIGRG Sbjct: 645 FVPADFADIPICDRIFTRVGASDDLSSGQSTFMVEMNEVSQILKNATSKSFVILDEIGRG 704 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 T+T DG+S+AWA +EY+ +C+ L ATH+HELTDL + N ++ V D E IIF Sbjct: 705 TSTYDGISLAWAIVEYIQSNIKCKTLFATHYHELTDLENEFREVKNYSISVKDDGENIIF 764 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 L K++ AD SYGI V KLA LP+ VI R+ +IL EK Sbjct: 765 LRKIVEQPADKSYGIYVAKLAKLPDQVIERSSEILSDLEK 804 >gi|307262087|ref|ZP_07543741.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868266|gb|EFN00089.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 864 Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust. Identities = 315/891 (35%), Positives = 491/891 (55%), Gaps = 41/891 (4%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 + ++L TPMM QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG Sbjct: 1 MTQDLSKHTPMMAQYLQLKAQNPDILLFYRMGDFYELFYDDAKKAATLLDISLTKRGASA 60 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G+ IPM GVP H Y+ KL+ +G +AICEQI P +K V R VVR+VTPG Sbjct: 61 GEPIPMAGVPYHAVEGYLAKLVSLGESVAICEQIGDPAT-----SKGPVERKVVRIVTPG 115 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPRE 196 T++++ LL N + A+ + +AIA +D+++G F I+ SN + L +++ R+ P E Sbjct: 116 TVSDEALLPERQDNLVAAIYEEKGVFAIATLDMTSGRFLITELSNKEALAAELQRLLPAE 175 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 I+++E + S AE + ++ L +P F+ + + + + ++ FG + V Sbjct: 176 ILYAE-DFSAAEILNNYKGLRR----RPVWEFELVTAINLLNRQFGTQSLAGFGVEKAVV 230 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA + Y ++TQ P I T+ +D+A R NLE+ + L+G E +L Sbjct: 231 ALCAAGCVLHYAQETQRTALPHINSIHLAQNSDTVLLDAATRRNLELTQNLAGGTENTLA 290 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D +T G RL I P+ D K+ R D I+ +Q I P+Q +L++ D+ Sbjct: 291 AVLDKCVTPMGSRLLKRWIHQPIRDLEKLKKRQDIIDT-LQKEQRIEPLQPLLQNVGDME 349 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN--DLPEELRGAVEKLKKLPQSLEK 433 R L+R+ + P+D+ +R + +I KN +L L V ++ + L Sbjct: 350 RILARVALRSARPRDLTRLRTALAQLPDIA----KNAKNLTASLDALVAQIGDFSE-LHA 404 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + + P RDGG + +G +A LDE R L + + + +L+++ E T I LKI Sbjct: 405 LLERAIIETPPQLIRDGGVIAEGYNAELDEWRELSAGATQYLENLEIREREATGIDTLKI 464 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GY+I+++ A ++ ++ RQT+ N R+ EL E+++ A + Sbjct: 465 GFNAVHGYYIQISQGQAH------KAPMHYVRRQTLKNAERYIIPELKTYEDKVLKAKGA 518 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 +L +E + ++ L + ++ + + A+ ++ +D+ LA A+ NY RP Sbjct: 519 SLALEKQLYDELFDLLMPRLGEMQLAAMALSELDVLTNLAERAESLNYVRPTFSLQRGVN 578 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +K GRHP+VE+ LK PFIAN L+ L ++TGPNMGGKST++RQ ALI Sbjct: 579 IKGGRHPVVEQVLK----DPFIANPVFLNAQR-----HLLVVTGPNMGGKSTYMRQIALI 629 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT S V Sbjct: 630 SLMAYIGSFVPADSAEIGALDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATENSLV 689 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA E+L + + L ATH+ ELT L LK N L Sbjct: 690 LIDEIGRGTSTYDGLSLAWACAEWLAKKTQSLTLFATHYFELTSLPSQLKGVANVHLDAR 749 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL------YHHNQ 847 + + I+F+H V G A SYG+ V LAG+P VI A L E++ H N Sbjct: 750 EHQDSIVFMHSVQEGAASKSYGLAVAALAGVPKQVIQLAKQRLAHLEEISLQTKEAHDNP 809 Query: 848 KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L+ ++Q L + + ++ DE++P AL+ LY +K Sbjct: 810 QGDLLFAADLQETPQIQPLVAQQSELEKALMSIDPDELTPRQALEALYRLK 860 >gi|85712118|ref|ZP_01043171.1| DNA mismatch repair protein [Idiomarina baltica OS145] gi|85694108|gb|EAQ32053.1| DNA mismatch repair protein [Idiomarina baltica OS145] Length = 853 Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust. Identities = 311/881 (35%), Positives = 499/881 (56%), Gaps = 47/881 (5%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 E+++++ TPMM+QY+ IK+ +PD L+FYRMGDFYELF+DDA A++ L I+LTKRG G Sbjct: 8 EQSIQAHTPMMQQYLRIKAEHPDMLLFYRMGDFYELFYDDAKRAAQLLDISLTKRGASNG 67 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM GVP H +Y+ +L+ G +AICEQ+ P +K V R VVR++TPGT Sbjct: 68 EPIPMAGVPYHAVENYLARLVTRGESVAICEQVGDPAT-----SKGPVERKVVRILTPGT 122 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 +T++ LL+ N L A+ +++ +++A +++S+G F +S + ++L +++ R+ P E+ Sbjct: 123 ITDESLLNDKQQNLLSAICELKSSFSLATLELSSGRFWLSEPQSREQLAAELQRLQPAEL 182 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQVE 256 ++ E +S A+ L + + + + FD + + + + FG F+Q E Sbjct: 183 LYPEG-MSLAQLP-----LAHCRCRKRSPWEFDADTAFKLLTQQFATRHLAGFG-FNQQE 235 Query: 257 KT--AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSL 314 +A A + Y++ TQ P I RE + +D+A R NLE+ ++ G L Sbjct: 236 PILGSAGAVMHYVQDTQRAALPHIRSITREPTDDAVILDAATRRNLELNQSAHGESTH-L 294 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 +D ++ G R F + PL D +N R D++ + + + +++ LK+ D+ Sbjct: 295 TAVLDETVCAMGSRNFQRWLQRPLRDHEILNQRYDAVEALMTDDRYLE-LREHLKAITDI 353 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R ++R+ + P+D A +RD + + L P L +++ + L+ Sbjct: 354 ERIVARIGLRSARPRDFARLRDSL---ARLPELKADCGAPA-LSYLTQRIASFDELLD-V 408 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L+ + + P RDGG + G D LDE R L + + +L+ + E T I +LK+ Sbjct: 409 LNRAIIEQPPVLIRDGGVIASGYDTELDELRDLATGATDYLNALEQRERERTGISSLKVG 468 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GYFIE + + + + + RQT+ N R+ EL E+++ A + Sbjct: 469 YNKVHGYFIETSKADGDQVPVE------YQRRQTLKNAERYIIPELKAHEDKVLTAQAKS 522 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP-IIDNSTNFI 613 L E ++ L + + + L ++ IA +D A A LA EQNYCRP +++ S Sbjct: 523 LAREKALYDGLYDHCLPFVDGLQQSASAIAELDTLCAFATLAVEQNYCRPALVEQSGLLK 582 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + RHP++E+ S +PFI ND ++ DK +L ++TGPNMGGKST++RQ ALI Sbjct: 583 LSQARHPVIERL----SDEPFIPNDLAMT---DKR--RLLMITGPNMGGKSTYMRQAALI 633 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 VI+A MG +VPA A IG VD++F+R+G++D++ASGRSTFMVEM ETA+IL+ AT++S V Sbjct: 634 VILAHMGCFVPAREAEIGFVDRIFTRIGASDDIASGRSTFMVEMTETANILHNATSESLV 693 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AW+ E L C L ATH+ ELT+L++ L+ N ++ Sbjct: 694 LMDEIGRGTSTYDGLSLAWSVAEQLASKLDCLTLFATHYFELTELAERLENSCNVHVEAQ 753 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 + N+ I+FLH V G A+ S+G+QV KLAG+PN VI RA L E+ N M + Sbjct: 754 EHNDHIVFLHTVAEGSANRSFGLQVAKLAGVPNNVIERAKRKLTELEQ--QPNSPQMEIP 811 Query: 854 YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 E T E + + E ++ L+LD+M+P+ AL L Sbjct: 812 LSETTTPEPTIDPLR------EALEALDLDQMTPMQALMWL 846 >gi|163749989|ref|ZP_02157233.1| DNA mismatch repair protein [Shewanella benthica KT99] gi|161330263|gb|EDQ01244.1| DNA mismatch repair protein [Shewanella benthica KT99] Length = 855 Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust. Identities = 320/881 (36%), Positives = 485/881 (55%), Gaps = 37/881 (4%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +NL+ TPMMRQY+ +K+ NP+ L+FYRMGDFYELF+DDA AS LGI+LT RGK G Sbjct: 7 QNLEKHTPMMRQYLTLKAENPEMLLFYRMGDFYELFYDDAKRASELLGISLTARGKSGGD 66 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H Y+ KL+++ +AICEQI P +K V R VVRL+TPGTL Sbjct: 67 PIPMAGLPYHAVEGYLAKLVQLRVSVAICEQIGDPATSK-----GPVERKVVRLITPGTL 121 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSN-HDRLISDIMRIDPREII 198 T++ LL N L AV + + A +D+S+G F +S N + L +++ R P E++ Sbjct: 122 TDEALLQERQDNLLAAVYHGKAGFGYASLDLSSGRFVVSELNTKEALEAELQRTSPAELL 181 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 +SE + S + F N +P FD + D +N + FG +++ Sbjct: 182 YSE-DFSEMSLIAGF----NGKRRRPEWEFDFDTCCKLLLDQFNTKDLCGFGLENARLSL 236 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA + Y+K TQ P I + ++ +D+A R NLE+ L G RE +L Sbjct: 237 QAAGCLMQYVKDTQRTALPHINSIVLFNQDDSIVLDAATRRNLELTINLQGGRENTLSAI 296 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D + T G R+ I PL + +I +RL ++ + + L + + LK+ D+ R Sbjct: 297 LDNTTTPMGSRMLQRWIHEPLRNRQQIESRLGALTELLDSG-LFDTLTPHLKALGDIERI 355 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 +RL + P+D + ++ + + +I L L P L+ + + P+ L L Sbjct: 356 TARLALRSARPRDFSRLKQALSTLPDIQQLLLGCQSPH-LKRLASLIGEFPEEL-ALLDR 413 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + D+ P RDGG L+DG D LD+ R+L + + L+ + T I LK+ +N Sbjct: 414 AIIDNPPMLIRDGGVLKDGYDEELDKWRALSKGATDYLKELEAREKASTGISTLKVGYNR 473 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IEV+ + ++ + RQT+ N R+ EL + E ++ ++ AL Sbjct: 474 VHGYYIEVSRRESDLVPLS------YQRRQTLKNTERYIIAELKEHEEKVLSSQGKALAR 527 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + +E L + ++ + +L +Q A +D+ A A+ NY P + + + ++ G Sbjct: 528 EKQLWEQLFDLLLPKLHALQQFAQGAAELDVISNFAERAETLNYRCPTLTDISGIHIESG 587 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE Q S PFIAN L+ ++ K+ ++TGPNMGGKST++RQ ALI +MA Sbjct: 588 RHPVVE----QVSQSPFIANPVTLN-----STRKMLIVTGPNMGGKSTYMRQVALITLMA 638 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GSYVPA A IG VD++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT+QS V++DE Sbjct: 639 HIGSYVPAQEAVIGPVDRIFTRIGASDDLASGRSTFMVEMTETANILHNATSQSLVLMDE 698 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGT+T DGLS+AW+ EYL E L ATH+ ELT L + + N L + + Sbjct: 699 IGRGTSTYDGLSLAWSAAEYLAEKIEAMTLFATHYFELTQLPELIDNVENVHLDAIEHGD 758 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 I+F+H V G A SYG+QV LAG+P VI+ A KL+H +D + E Sbjct: 759 TIVFMHAVQEGAASKSYGLQVAALAGVPARVIAAAK------HKLHHLESRDSKGITQE- 811 Query: 858 QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++++ E ++ +N DE+SP AL LY +K Sbjct: 812 SPQQARVFPEPQISPVEEALQSINPDELSPKQALDILYKLK 852 >gi|45645391|gb|AAS73295.1| DNA mismatch repair protein [Haemophilus influenzae] Length = 861 Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust. Identities = 312/888 (35%), Positives = 494/888 (55%), Gaps = 42/888 (4%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 EEN + TPMM+QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG+ G Sbjct: 4 EENFQQHTPMMQQYLKLKAENPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGQSAG 63 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM G+P H Y+ KL+++G +AICEQI P +K V R +VR+VTPGT Sbjct: 64 QPIPMAGMPYHAVEGYLAKLVQLGESVAICEQIGDP-----AASKGPVERQIVRIVTPGT 118 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N + AV + + ++ +A +D+++G F++ ++ + L +++ RI P E+ Sbjct: 119 VSDEALLPERQDNLIAAVYQEKEKFGLATLDMTSGRFQLCEPADKETLRAELQRIAPVEL 178 Query: 198 IFSEK--ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQV 255 ++ E+ E++ E+ +P F+ S + + + + + FG V Sbjct: 179 LYCEEFNEMAAIEHCKGLR-------GRPIWEFELSTAITLLNRQFGTKDLRAFG----V 227 Query: 256 EKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR 310 EK+ AA + Y K+TQ P I Q + +D+A R NLE+ + L+G Sbjct: 228 EKSPLGLSAAGCLLQYAKETQRTELPHIQSISLIQNQDCIQLDAATRRNLELTQNLAGGT 287 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 E +L +D +T G RL I P+ D K+ R SI + N L++ +Q L+ Sbjct: 288 ENTLSSVLDKCVTPMGSRLLKRWIHQPVRDVEKLKQRQQSIAEIL-NFDLVDELQPYLQL 346 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS 430 D+ R L+R+ + P+D+ +R + I L ++ P L ++ + Sbjct: 347 VGDMERILARVALRSARPRDLTRLRTALEQ-IPALRAIVQQKTPPFLTALFSQIADFSEQ 405 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 + L L + P RDGG + +G +A LDE R L D + + + +L+ + E T I Sbjct: 406 YD-LLQRALIETPPLLIRDGGVIAEGYNAELDEWRMLSDGATQYLENLEKRERESTGIDT 464 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LKI N GY+I+++ A ++ ++ RQT+ N R+ EL + E+++ + Sbjct: 465 LKIGFNAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKEYEDKVLKS 518 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 +AL +E + ++ L + ++ +L AS ++ +D+ + LA A NY P + Sbjct: 519 KGAALALEKQLYDELFDLLLPHLGTLQLASLALSELDVLVNLAERADTLNYVMPTFCDEV 578 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 + +++GRHP+VE+ LK PFIAN +L+ ++ L ++TGPNMGGKST++R Sbjct: 579 SVKIENGRHPVVEQVLK----DPFIANPVELN-----HNRHLLVITGPNMGGKSTYMRPT 629 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI ++A +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT Q Sbjct: 630 ALITLLAYIGSFVPADSAGIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATEQ 689 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V++DEIGRGT+T DGLS+AWA E+L + R L ATH+ ELT L + L+ N L Sbjct: 690 SLVLIDEIGRGTSTYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLEGIANIHL 749 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM 850 + N I F+H V G A SYG+ V LAG+P +VI A L EK H+ + Sbjct: 750 DALEHNNSIAFMHAVQDGAASKSYGLAVAALAGVPQSVIKLAKQKLTQLEKNSGHSAEQQ 809 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E + + + E I+ L+ D++SP AL LY +K Sbjct: 810 IQALREANHNQGELFFEQETDALREAIEKLDPDDLSPKQALAYLYQLK 857 >gi|309751693|gb|ADO81677.1| DNA mismatch repair protein MutS [Haemophilus influenzae R2866] Length = 861 Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust. Identities = 314/889 (35%), Positives = 497/889 (55%), Gaps = 44/889 (4%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 EEN + TPMM+QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG+ G Sbjct: 4 EENFQQHTPMMQQYLKLKAENPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGQSAG 63 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM G+P H Y+ KL+++G +AICEQI P +K V R +VR+VTPGT Sbjct: 64 QPIPMAGMPYHAVEGYLAKLVQLGESVAICEQIGDP-----STSKGPVERQIVRIVTPGT 118 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N + AV + + ++ +A +D+++G F++ ++ + L +++ RI P E+ Sbjct: 119 VSDEALLPERQDNLIAAVYQEKEKFGLATLDMTSGRFQLCEPADKETLRAELQRITPVEL 178 Query: 198 IFSEK--ELSHAEY-KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 ++ E+ E++ E+ K L +P F+ S + + + + + FG Sbjct: 179 LYCEEFNEMAAIEHCKGLRR--------RPIWEFELSTAITLLNRQFGTKDLRAFG---- 226 Query: 255 VEKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS 309 VEK+ AA + Y K+TQ P I Q + +D+A R NLE+ + L+G Sbjct: 227 VEKSPLGLSAAGCLLQYAKETQRTALPHIQSISLIQNQDCIQLDAATRRNLELTQNLAGG 286 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 E +L +D +T G RL I P+ D K+ R SI + N L++ +Q L+ Sbjct: 287 TENTLASVLDKCVTPMGSRLLKRWIHQPIRDVEKLKQRQQSIAEIL-NFDLVDELQTYLQ 345 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 D+ R L+R+ + P+D+ +R + I L ++ P L ++ + Sbjct: 346 LVGDMERILARVALRSARPRDLTRLRTALEQ-IPALRAIVQQKTPPFLTALFSQIADFSE 404 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 + L L + P RDGG + +G +A LDE R L D + + + +L+ + E T I Sbjct: 405 QCD-LLQRALIETPPLLIRDGGVIAEGYNAELDEWRMLSDGATQYLENLEKRERESTGID 463 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LKI N GY+I+++ A ++ ++ RQT+ N R+ EL + E+++ Sbjct: 464 TLKIGFNAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKEYEDKVLK 517 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 + +AL +E + ++ L + ++ +L AS ++ +D+ + LA A NY P + Sbjct: 518 SKGAALALEKQLYDELFDLLLPHLGTLQLASLALSELDVLVNLAERADTLNYVMPTFCDE 577 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 + +++GRHP+VE+ LK PFIAN +L+ ++ L ++TGPNMGGKST++RQ Sbjct: 578 VSVKIENGRHPVVEQVLK----DPFIANPVELN-----HNRHLLVITGPNMGGKSTYMRQ 628 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI ++A +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT Sbjct: 629 TALITLLAYIGSFVPADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATA 688 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 QS V++DEIGRGT+T DGLS+AWA E+L + R L ATH+ ELT L + L+ N Sbjct: 689 QSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLEGIANIH 748 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 L + N I F+H V G A SYG+ V LAG+P +VI A L EK ++ + Sbjct: 749 LDALEHNNSIAFMHAVQDGAASKSYGLAVAALAGVPQSVIKLAKQKLTQLEKNSSYSAEQ 808 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E + + + E I+ L+ D++SP AL LY +K Sbjct: 809 QIQALREANHNQGELLFEQETDALREAIEKLDPDDLSPKQALAYLYQLK 857 >gi|147677674|ref|YP_001211889.1| DNA mismatch repair protein MutS [Pelotomaculum thermopropionicum SI] gi|189083168|sp|A5D2K2|MUTS_PELTS RecName: Full=DNA mismatch repair protein mutS gi|146273771|dbj|BAF59520.1| mismatch repair ATPase [Pelotomaculum thermopropionicum SI] Length = 863 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 322/896 (35%), Positives = 500/896 (55%), Gaps = 78/896 (8%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD-IPMCGV 86 M+RQY+EIK PD+++F+R+GDFYE+FFDDA LASR L ITLT G+ G + +PMCG+ Sbjct: 1 MIRQYLEIKKQYPDAILFFRLGDFYEMFFDDARLASRELEITLT--GRDGGSERVPMCGI 58 Query: 87 PVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLS 146 P H A+ YI +LI G+R+AICEQ+E P EAK +VRR V R++TPGT+TE L Sbjct: 59 PYHAADGYIARLISKGYRVAICEQVEDPAEAK-----GIVRREVTRVITPGTVTEGHFLE 113 Query: 147 PTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR----LISDIMRIDPREII---- 198 +NYL ++A + +A DI+TG+F +S+ + R LI ++ R++P E+I Sbjct: 114 DKKNNYLASIAPFEEGYGLAVTDITTGVFMVSSFSGVRAWSELIDEMARLNPAEVIIPLA 173 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQV--- 255 +S+K + + + G + D + S + + + FGS + Sbjct: 174 YSDKMGGDLKQQGILAVSG---------YRDTAFSPAEAVPAFE----EQFGSAGSLCNR 220 Query: 256 ------EKTAAAAAISYIKKTQ-----MVNKPTIGYPEREDIQSTLFIDSAARSNLEILR 304 AA A + ++++TQ +NK P + + +D+ R NLE+ R Sbjct: 221 TIDYHAAVAAAGALLIFLRETQKRVLKHINKAAFYRPGK-----YMILDANTRRNLELTR 275 Query: 305 TLS-GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINP 363 +S GSR +LL ID+++T GGRL I PL D +I RL++ N +L Sbjct: 276 AISDGSRRNTLLSVIDHTVTAMGGRLLRNWIEQPLLDVAEIKARLEATEDLAGNAMLRLE 335 Query: 364 IQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEK 423 ++ +LK+ D+ R ++ G +D+ G++ + L L + L + ++ Sbjct: 336 LKSLLKNVYDLERLTGKISFGTANARDLI----GLKKSLANLPLIKQLLLAQAGAALLKD 391 Query: 424 LKKLPQSLEKT---LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 + + LE+ L + + D+ P +DGG ++ G + +D R R + K ++A L+ Sbjct: 392 VARSIDPLEEVRELLEAAIDDNPPLSLKDGGIIKKGYNHEVDRLRQARREGKSMLAGLEE 451 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 + T IK+LK+ N GY+IEVT ++ ++ +D + RQT++N RF T EL Sbjct: 452 RERARTGIKSLKVGFNKVFGYYIEVTRANLELVPED------YQRRQTLANAERFITPEL 505 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 + E+ I A +E F+ + + + + ++ IA D +LA A + Sbjct: 506 KEYEDMILRAEERLASLERRLFDEVLERLSGEIHRIQKSASAIATADALYSLAEAAVKGR 565 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 Y RP I VKDGRHP++E+ + F+ ND + D + LLTGPNM Sbjct: 566 YSRPEIAEDGKLHVKDGRHPVLEQVM---GPGRFVPNDTFM----DNEESRFILLTGPNM 618 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GKST++RQ ALIV++AQ+GS+VPA +A I + D++F+RVG++D++A G+STFMVEM E Sbjct: 619 AGKSTYMRQVALIVLLAQIGSFVPALFARIPVFDRIFTRVGASDDIAGGQSTFMVEMNEC 678 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 I+N+AT +S +I+DE+GRGT+T DG+SIA A EY+H R + L +TH+HELTDL Sbjct: 679 RIIVNEATEKSLIIMDEVGRGTSTYDGISIARALAEYIHTKIRAKTLFSTHYHELTDLD- 737 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 S+ N + V + E IIFL KV+PG +D SYGIQV +LAGLP +I+R+ +ILKT E Sbjct: 738 SMPGIVNFNVAVREEGEDIIFLRKVVPGKSDRSYGIQVARLAGLPGEIINRSMEILKTLE 797 Query: 841 KLYHH-NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 Q +P + KE N+ +++++ LN+ EM+PL A+ LY Sbjct: 798 LAAERPPQPSPAKEWPAYRYKE-------NECHVIQELRRLNVLEMTPLEAINKLY 846 >gi|113969468|ref|YP_733261.1| DNA mismatch repair protein MutS [Shewanella sp. MR-4] gi|122944021|sp|Q0HL63|MUTS_SHESM RecName: Full=DNA mismatch repair protein mutS gi|113884152|gb|ABI38204.1| DNA mismatch repair protein MutS [Shewanella sp. MR-4] Length = 861 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 317/886 (35%), Positives = 485/886 (54%), Gaps = 41/886 (4%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 ++L+ TPMMRQY+ +K+ + D L+FYRMGDFYELF+DDA AS LGI+LT RGK G Sbjct: 7 DDLEKHTPMMRQYLTMKAEHHDMLLFYRMGDFYELFYDDAKRASELLGISLTARGKSGGD 66 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H Y+ KL++IG +AICEQI P +K V R VVR+VTPGTL Sbjct: 67 PIPMAGIPYHAVEGYLAKLVQIGQSVAICEQIGDPATSK-----GPVERKVVRIVTPGTL 121 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREII 198 T++ LL N L AV + + + A +D+S+G F I+ + L +++ R +P EI+ Sbjct: 122 TDEALLQERQDNLLAAVYQGKVGFGYATLDVSSGRFVIAELETKESLEAELQRTNPVEIL 181 Query: 199 FSEK----ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFS 253 +SE EL H +K +P FD+ S + + + FG + + Sbjct: 182 YSEDFGAMELLH-HFKG--------KRRRPEWEFDYDTSIKLLLAQFGTKDLHGFGITDA 232 Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 ++ AA + Y+K TQ P I R + T+ +D+A R NLE+ + LSG R+ + Sbjct: 233 RLSLQAAGCLMQYVKDTQRTALPHINAITRFNQTDTIVLDAATRRNLELTQNLSGGRDNT 292 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D + T G R+ I PL D +I R ++N ++ + + LK+ D Sbjct: 293 LAAVLDNTATAMGSRMLQRWIHQPLRDHAQIFARQTAVNELLET-TAHESLHEQLKALGD 351 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R ++RL + P+D A +R + + + P ++ + L + P+ ++ Sbjct: 352 IERIMARLALRTARPRDFARLRQALNLLPKLQQSLAQLSAPHTVKLG-QLLGEFPEE-QQ 409 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + D+ P RDGG +R+G +A LDE R L + + + L+ + E T I LK+ Sbjct: 410 LLERAIVDNPPMLIRDGGVIREGYNAELDEWRGLSEGATDYLVQLEAREKERTGIATLKV 469 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GY+IEV+ + + + + RQT+ N+ R+ T EL + E ++ ++ Sbjct: 470 GYNRVHGYYIEVSRLQSQQVPLN------YQRRQTLKNMERYITPELKEYEEKVLSSQGK 523 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E + ++ L + I+ + L ++ A +D+ A A+ Y P + + Sbjct: 524 ALALEKQLWDELFDLILPKLHELQAFARAAAELDVLSNFAERAETLGYTCPELSSEIGVK 583 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 ++ GRHP+VE+ S PFIAN L N ++ ++TGPNMGGKST++RQ ALI Sbjct: 584 IEAGRHPVVERV----SQTPFIANPVTLY-----NQRRMLIVTGPNMGGKSTYMRQVALI 634 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +G +VPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT QS V Sbjct: 635 TLMAHIGCFVPADRAIIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATAQSLV 694 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AW+ EYL + L ATH+ ELT L + + +N L Sbjct: 695 LMDEIGRGTSTYDGLSLAWSAAEYLAQQVGAMTLFATHYFELTQLPELMAGVYNVHLDAI 754 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-DMRL 852 + + I F+H V G A SYG+QV LAG+P VI A L E H + ++ Sbjct: 755 EHEDTIAFMHAVQEGAASKSYGLQVAALAGVPARVIKAAKHKLHQLESRDHQVEGVNVNG 814 Query: 853 YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 IQT + +N V K+K +N D ++P AL LY +K Sbjct: 815 TRAPIQTLLALPEPVENPA--VSKLKAINPDNLTPKQALDLLYELK 858 >gi|187779607|ref|ZP_02996080.1| hypothetical protein CLOSPO_03203 [Clostridium sporogenes ATCC 15579] gi|187773232|gb|EDU37034.1| hypothetical protein CLOSPO_03203 [Clostridium sporogenes ATCC 15579] Length = 931 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 309/834 (37%), Positives = 491/834 (58%), Gaps = 56/834 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+E+K D ++F+R+GDFYE+FF+DA +AS+ L + LT R L + PMCG Sbjct: 4 TPMMKQYLEVKESCKDCILFFRLGDFYEMFFEDAKVASKELELVLTGRDCGLEERAPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H AN YI +L+ G++IAICEQ+E P +K +V+R +++++TPGT T+ L Sbjct: 64 IPYHAANTYIGRLVSAGYKIAICEQLEDP-----SASKGIVKRGIIKIITPGTYTDSSFL 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREIIF---S 200 +NY+M+ ++++ DISTG F + SN ++ +I + PREI+ + Sbjct: 119 EENKNNYIMSFYLDDNMCSMSFADISTGEFNSTHSNFKEAVVLDEISKFAPREIVLDENT 178 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITT--VDTFGSFSQVE-- 256 E++ H ++ E N+++++ I E + YNI D F +F++ E Sbjct: 179 EEDFIH----TIKERFPNISISK--------IKEENFS--YNIDNNLKDQFSNFNEDEYE 224 Query: 257 ---KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQ 312 K +A + YI TQ I + I L ID +R NLEI L +++ Sbjct: 225 TIVKKSANGLLYYIFHTQKNILSNINKIDYYSIVDYLTIDVNSRRNLEITENLREKTKKG 284 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 SLL +D + T GGR I PL + I RL+++ + N L +++ L+S Sbjct: 285 SLLWVLDKTNTAMGGRQLRRWIEQPLINKNPIEDRLNAVEELLNNISLQEDLKEDLRSIY 344 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN---DLPEELRGAVEKLKKLPQ 429 D+ R + ++ K++ ++ I I + +L N DL + ++ L+ + + Sbjct: 345 DIERIVGKVASKSVNAKELISLKCSI-GKIPYIKEYLANFKSDLFLNMEQNIDTLEDIHE 403 Query: 430 SLEKTLSSMLSDDLPTFK-RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 L+K+L D P+ ++G +++G + +D R + K+ IASL+ K EET I Sbjct: 404 LLDKSLL-----DSPSLSVKEGNIIKEGFNEEVDSLREAKSNGKKWIASLEQKEKEETGI 458 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 K+LK+ +N GYFIE+T ++ S + + R+I +QT++N R+ T EL ++E +I Sbjct: 459 KSLKVSYNKVFGYFIEITKANLSSV-----PEGRYIRKQTLANAERYITPELKEMEEKIL 513 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 A + IE + F + + I E + + +++I+ ID +LA +A E NY +P I+ Sbjct: 514 GAEEKLIDIEYKLFTKIRDFIEENIDRMQKTARIISDIDCLCSLATVALENNYIKPNINA 573 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 ++++GRHP+VEK + + FI+ND + D +L L+TGPNM GKST++R Sbjct: 574 KDEILIEEGRHPVVEKVIPKGE---FISNDSLI----DTKENQLILITGPNMAGKSTYMR 626 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q ALI IMAQ+GS+VPA A+I I DK+F+R+G++D+LA+G+STFMVEM E ++IL AT Sbjct: 627 QVALITIMAQIGSFVPAKKANISICDKIFTRIGASDDLAAGKSTFMVEMWEVSNILKNAT 686 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYL--HETNRCRGLLATHFHELTDLSKSLKRFH 786 ++S V+LDE+GRGT+T DGLSIAW+ IEY+ ++ RC+ L ATH+HELT L +++ Sbjct: 687 SKSLVLLDEVGRGTSTYDGLSIAWSVIEYICNNKNLRCKTLFATHYHELTKLEDNIEGVK 746 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 N ++ VS+ I+FL K+I G AD SYGI+V KLAGLP+ VI+RA +IL+ E Sbjct: 747 NYSVSVSELENEIVFLRKIIRGGADQSYGIEVAKLAGLPSPVINRAKEILQHIE 800 >gi|261855270|ref|YP_003262553.1| DNA mismatch repair protein MutS [Halothiobacillus neapolitanus c2] gi|261835739|gb|ACX95506.1| DNA mismatch repair protein MutS [Halothiobacillus neapolitanus c2] Length = 881 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 316/900 (35%), Positives = 493/900 (54%), Gaps = 49/900 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 ++L TPMM+Q+ +K +PD L+FYRMGDFYELF+ DA A+R L +TLT RG+ G+ Sbjct: 5 KDLSQHTPMMQQFWTMKQAHPDVLLFYRMGDFYELFYADAERAARILDLTLTTRGQSAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVPVH Y+ +LI+ G +AICEQI E K +G + R VVR+VTPGT+ Sbjct: 65 PIPMAGVPVHAYESYLARLIRAGESVAICEQIG---ETKTKGP---MERAVVRVVTPGTV 118 Query: 140 TEDQLLSPTDSNYLMAVARIRT---EWAIAWIDISTGIFKISTSNHDRLISDIMRIDPRE 196 T++ LL + N L A+ + T E+ +A +D++ G F + + L +++ RIDPRE Sbjct: 119 TDEALLDQREGNRLAALVPLATTPPEYGLAHLDLAAGDFVLMRLDDAALTAELARIDPRE 178 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG--SFSQ 254 ++ E A+ + + + FD ++ + ++ I + +FG Q Sbjct: 179 LLLPESLAEAADTAAKIGVDPKRWRTRADWQFDAKRGQAALLKHWQIHDLKSFGVTEIHQ 238 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS------G 308 AAA ++Y+ +TQ P I E + L ID R +LE+ + G Sbjct: 239 PALGAAAILLTYVAETQRSAVPHIERLRVEHLGDALLIDRNTRRHLELFTSNQEGSHDDG 298 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKIL 368 +L+ +D ++T G RL + PL D + R +I I+ IN +++ L Sbjct: 299 RSAATLINLLDETVTAHGSRLLKHWLGRPLRDQAVLRHRQQAIGELIERGK-INALRESL 357 Query: 369 KSSPDVPRSLSRLKIGRGEPKDIAVIRDGI------RSGINILNLFLKNDLPEELRGAVE 422 + D+ R +R+ +G P+D++ +RD + + +N L+L L DL L Sbjct: 358 RGINDIERITTRIVMGSARPRDLSGLRDALGVLPALSAQLNQLDLPLWRDLAVRLTD--- 414 Query: 423 KLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 + P+ L L+ L P + RDGG + G DA LDE R L + + + +L+ + Sbjct: 415 --QPAPREL---LNRALVTQPPVWLRDGGVIAAGFDAELDELRHLSEHADDALNALEAQA 469 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 ++ I++LKI +N G++ EV+ A + +FI RQT+ ++ R+TT EL Sbjct: 470 RLQSGIQSLKIAYNRVQGFYFEVSRLQAEKMPP------QFIRRQTLKSVERYTTEELKT 523 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+R+ +A + AL E F L + +L ++ IA +D+ +LA +A+ Q + Sbjct: 524 FEDRVLSARDRALAREQGLFTELLQTLATHQSALRRMAEAIAEVDVLHSLARVAECQRWV 583 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQ-SSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 P + + ++ GRHP++E KQ ++PF NDC+L+ PN + L ++TGPNMG Sbjct: 584 APELGSEPGIHIEAGRHPVIEALTKQTLGNQPFTPNDCELT-PNRQ----LLMITGPNMG 638 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKST++RQ ALIV++A +G++VPA+ A IG +D++F+R+G+ D+LASGRSTFMVEM ETA Sbjct: 639 GKSTYMRQTALIVLLAHIGAFVPATRARIGPIDRIFTRIGAGDDLASGRSTFMVEMTETA 698 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS 781 IL+ AT S V++DEIGRGT+T DGL++AWA E+L NR L ATH+ ELT L++ Sbjct: 699 EILHTATENSLVLIDEIGRGTSTFDGLALAWAVAEHLIRRNRALTLFATHYFELTQLTER 758 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 N L + +IFLH V G A SYGI+V LAGLP I RA +LK E+ Sbjct: 759 FDTVRNVHLDAVTHKDDLIFLHSVKDGPASQSYGIKVAALAGLPREAIRRAQALLKQLEQ 818 Query: 842 LYHHNQKDMRL---YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + +L PE+ + + + + ++ L+ D ++P AL +YA + Sbjct: 819 QHPVGAATPQLDLFAAPEVTDAIEEPEIEPHP--LITALEKLDPDILTPKQALDLIYAWR 876 >gi|254507361|ref|ZP_05119496.1| DNA mismatch repair protein MutS [Vibrio parahaemolyticus 16] gi|219549617|gb|EED26607.1| DNA mismatch repair protein MutS [Vibrio parahaemolyticus 16] Length = 859 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 311/897 (34%), Positives = 493/897 (54%), Gaps = 63/897 (7%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 E++ + TPMM+QY+++K+ NPD L+FYRMGDFYELF+DDA AS+ L I+LTKRG G Sbjct: 6 EKDKQKHTPMMQQYLKLKAENPDILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAG 65 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT Sbjct: 66 EPIPMAGVPFHAVEGYLAKLVQLGESVAICEQIGDPATSK-----GPVERAVVRIVTPGT 120 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREI 197 +T++ LLS N + A+ ++ A +D+++G F++ + + +++ R PRE+ Sbjct: 121 VTDEALLSERIDNLIAAIYHHDGKFGYATLDVTSGRFQLMEPETEEAMAAELQRTAPREL 180 Query: 198 IFSEKELSHAEYKSLFETLG-----NVAVAQPNVFFDHSISESRIADYYNITTVDTFG-S 251 +F E FE + N +P F+ ++ ++ + + FG Sbjct: 181 LFPED----------FEPVHLMSSRNGNRRRPVWEFELDTAKQQLNQQFGTRDLVGFGVE 230 Query: 252 FSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 +++ AA I Y+K TQ P I + ++ +D+A R NLEI + L+G + Sbjct: 231 HAKLGLCAAGCLIQYVKDTQRTALPHIRSLTFDRQDHSVILDAATRRNLEITQNLAGGTD 290 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 +L + +D++ T G R+ + P+ D +N RLD+I +++ L + + +LK Sbjct: 291 NTLAEVLDHTATAMGSRMLKRWLHQPMRDIDTLNHRLDAIAE-LKDEALFSDLHPVLKQI 349 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEK--LKKL 427 D+ R L+RL + P+D+A +R + LPE EL ++ L KL Sbjct: 350 GDIERILARLALRSARPRDMARLR------------YAMQQLPEVSELMSSLHHPYLSKL 397 Query: 428 PQ------SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLK 481 Q + + L + ++ P RDGG + +G +A LDE R L D + + ++ Sbjct: 398 AQYAAPMGEVCELLERAIKENPPVVIRDGGVIAEGYNAELDEWRKLADGATEYLEQMEQD 457 Query: 482 YAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELI 541 E I +LK+ +NN G+FI+V+ + ++ ++ RQT+ N R+ EL Sbjct: 458 ERERHGIDSLKVGYNNVHGFFIQVSRGQSHLVPP------HYVRRQTLKNAERYIIPELK 511 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 + E+++ N+ + AL +E + +E L + ++ E + N + ++ ID+ LA A +Y Sbjct: 512 EHEDKVLNSKSKALALEKQLWEELFDLLLPHLEQMQNVASAVSQIDVLQNLAERADSLDY 571 Query: 602 CRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 CRP + ++ GRHP+VE+ + + PFIAN +L+ K+ ++TGPNMG Sbjct: 572 CRPNLIKEAGIHIQAGRHPVVEQVMDE----PFIANPIELNAQR-----KMLIITGPNMG 622 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKST++RQ ALI +MA +GSYVPA A IG VD++F+R+G++D+LASGRSTFMVEM ETA Sbjct: 623 GKSTYMRQTALIALMAHIGSYVPAESATIGSVDRIFTRIGASDDLASGRSTFMVEMTETA 682 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS 781 +IL+ AT S V++DEIGRGT+T DGLS+AWA+ E+L + L ATH+ ELT+L Sbjct: 683 NILHNATQNSLVLMDEIGRGTSTYDGLSLAWASAEWLAKQLGSMTLFATHYFELTELPSQ 742 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 + N L + + I F+H V G A SYG+ V LAG+P +VI A L E+ Sbjct: 743 IPTLANVHLDAVEHGDSIAFMHAVQEGAASKSYGLAVAGLAGVPKSVIKNARAKLTQLEQ 802 Query: 842 LYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + +I + S L E + ++ D+++P AL+ LY +K Sbjct: 803 IGQIEASSTPSSGVDIANQLS---LIPEPSEVEEALSNIDPDDLTPRQALEELYRLK 856 >gi|196233654|ref|ZP_03132495.1| DNA mismatch repair protein MutS [Chthoniobacter flavus Ellin428] gi|196222324|gb|EDY16853.1| DNA mismatch repair protein MutS [Chthoniobacter flavus Ellin428] Length = 864 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 308/850 (36%), Positives = 483/850 (56%), Gaps = 68/850 (8%) Query: 26 TPMMRQYIEIK-SINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 TPMM+QY I+ S+ D+L+ +R+GDFYE+FF+DA AS L + LTKR PMC Sbjct: 6 TPMMQQYQSIRRSLPADTLLLFRLGDFYEMFFEDAKEASAILNVALTKRNL-----TPMC 60 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G+P H A++YI++LIK G R+AIC+QI P + + +V+R + +V+PGT+ + + Sbjct: 61 GIPHHAADNYIRRLIKAGRRVAICDQIGEPQKGQ------IVQREITHIVSPGTVADLHM 114 Query: 145 LSPTDSNYLMAV-ARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEK 202 L +N+L A+ A ++ + A++D++TG F+++ ++ L ++ R+ P E++ SE+ Sbjct: 115 LDAKRNNFLAAIYAGGKSGYGFAFVDLTTGDFRLTELADEKELADELARVQPAEVLVSEE 174 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 + A+++ + G VA D + R D++ + ++D FG AA Sbjct: 175 Q--AAQFR---DVRGLVARDGYTFLLDQAYFTLR--DHFKVQSLDGFGCEELPGAIGAAG 227 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTLSGSREQSLLKTID 319 AI + KT++ + ++ + R + +D+A ++NLE++ G R+ SLL +D Sbjct: 228 AILHYLKTEL--RRSLSHITRLVCYRNSQFMVLDAATQANLELVEARGGGRDTSLLGALD 285 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 ++T G R + I PL + + R I + P L+ +++ LKS D+ R++ Sbjct: 286 RTVTPMGARKLRDWILHPLCEIAPLQQRQQMIADLLAEPFLLGNLRETLKSIRDMERTVG 345 Query: 380 RLKIGRGEPKDIAVIR-------------DGIRSGINILNLFLKNDLPEELRG--AVEK- 423 RL G +D+ V+R + + N L + P + RG VE Sbjct: 346 RLTQTGGNARDLQVLRMSLEQIPQLRDDLEALGKARNPLEEVGRAGAPRQARGLEPVETA 405 Query: 424 ------------LKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQS 471 L LP +E L+ + D+ P R+GG RDG A LDE R+ + Sbjct: 406 HLSGLGEQIRGDLHPLPHVVE-LLTKAIVDEPPALTREGGMFRDGYFAPLDELRNAGREG 464 Query: 472 KRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSN 531 K IA LQ + EET IK+LK+++ + GYFIEVT S+ ++ + K QT++ Sbjct: 465 KDWIAQLQQRAIEETGIKSLKVRYTSVFGYFIEVTKSNLHLVPQSWHRK------QTVAT 518 Query: 532 LTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIA 591 RF T EL ++E +I A A +E E F + + ++ + +L + + +A +D+ A Sbjct: 519 GERFITPELKEVEGKILGADERAKALEQELFLQIRDEVLRELHALQSTAAAVATLDVLGA 578 Query: 592 LAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGK 651 A+ YCRP + + DGRHP+++++L ++ F+ ND L D + Sbjct: 579 FGETARLFGYCRPSLSEDLRINIVDGRHPVLDQSLVEEK---FVPNDVLL----DGEKNR 631 Query: 652 LWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRS 711 L +LTGPNM GKST++RQ AL+ +MAQ+GS+VPA A IG+ D++F+RVG++D+L+ G+S Sbjct: 632 LLILTGPNMAGKSTYIRQVALLTLMAQIGSWVPAKEAEIGLADRIFTRVGASDDLSRGQS 691 Query: 712 TFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATH 771 TFMVEM ETA+I N AT +S VILDEIGRGT+T DGLSIAW+ EYLH+ + R L ATH Sbjct: 692 TFMVEMNETANITNNATVRSLVILDEIGRGTSTFDGLSIAWSVAEYLHDEVKARTLFATH 751 Query: 772 FHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISR 831 +HELT+L + N + V + N+ IIFL K+I G AD SYGIQV +LAGLP +I+R Sbjct: 752 YHELTELELTRTGVRNYNIAVREWNDQIIFLRKIIKGGADKSYGIQVARLAGLPAGIIAR 811 Query: 832 AYDILKTFEK 841 A +IL E+ Sbjct: 812 AKEILSNLEQ 821 >gi|219851578|ref|YP_002466010.1| DNA mismatch repair protein MutS [Methanosphaerula palustris E1-9c] gi|219545837|gb|ACL16287.1| DNA mismatch repair protein MutS [Methanosphaerula palustris E1-9c] Length = 874 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 322/893 (36%), Positives = 489/893 (54%), Gaps = 52/893 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK-HLGKDIPMC 84 +P MRQY K PD+L+ +RMGDFYE F DA + +R L I LT R GK IP+ Sbjct: 6 SPGMRQYQAAKQQYPDALLLFRMGDFYETFGADAEIVARELDIVLTSRSSDSAGKKIPLA 65 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H A+ YI +L++ G+++A+ EQ+E P +AK LVRR VVR++TPGT+ E +L Sbjct: 66 GVPYHAADGYIARLVRRGYKVAVGEQVEDPKKAK-----GLVRREVVRVITPGTVIESEL 120 Query: 145 LSPTDSNYLMAVA--RIRTEWAIAWIDISTGIFKI----STSNHDRLISDIMRIDPREII 198 L ++ L+AVA R + +A +D+STG F + S S+ L +++ RI P E+I Sbjct: 121 LGSAEARTLVAVALDRRTDQIGVASLDVSTGAFSVLVTRSGSDCSGLRTELARIGPTEVI 180 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + + + + V P+ F + + ++ T++ FG + + Sbjct: 181 VPAS--ADPDLIAAAREICPVVTPYPDESFAPGTANELLKHHFQTATLEGFGC-AGLPLA 237 Query: 259 AAAAAISYIKKTQMVNKPT--IGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLL 315 AA + +M + P I + + +D NLE++ T+ G +++ +LL Sbjct: 238 IGAAGAALAYALEMHHAPLTHITTLSTRTAEERMVLDEITLRNLELVSTIRGEAKDGTLL 297 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T G RL + SPL + +I RLD+++FF+ +P++ + ++ +L S D+ Sbjct: 298 SVLDRTGTSMGARLLKSCLVSPLLNREQIEERLDAVSFFVDHPMVRSEVRSLLHRSADIE 357 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDL--PEELRGAVEKLKKLPQSLEK 433 R R+ G P+D+ + + I +L ++ P E+ AV ++ P S+ Sbjct: 358 RIAGRIAYGSATPRDLVTLNRSLTVLPMISSLLSDPEVTVPAEVATAVAGIED-PGSITD 416 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + L DD P R+GG +RDG D +LD RSL K I LQ K E T I+ LKI Sbjct: 417 LIERALVDDPPANTRNGGMIRDGYDETLDHFRSLSGSGKDWILDLQQKERERTGIRTLKI 476 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GY+IEVT ++A+++ + + K QT +N R+TT L + E +I A Sbjct: 477 AYNRVFGYYIEVTKANAALVPAEYDRK------QTTTNGERYTTPALREQEQQIAEAEEH 530 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 L E F L ++ L + +A +D+ ALA +A + + RP+I + + Sbjct: 531 LLERETMLFAALLTSLAGSVPMLQQNAASVAWLDLYSALAEVAVQDGFTRPVIIDEPKVL 590 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 ++ GRHP+VE Q FI ND + D ++ ++TG NM GKST++R A++ Sbjct: 591 IRGGRHPVVE----QHVEGGFIPNDTSM----DGAEEQILIITGANMAGKSTYMRSLAIL 642 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 IMAQMGS+VPA +A IG+VD++F+RVG+ D+LA G+STFMVEM+E A+ILN T QS V Sbjct: 643 CIMAQMGSFVPADHATIGLVDRVFTRVGAFDDLARGQSTFMVEMVELANILNHVTPQSLV 702 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRC--RGLLATHFHELTDLSKSLKRFHNATLQ 791 ILDEIGRGT+T+DG SIA A +E+LH + R L ATHFHEL D+ +LKR N L Sbjct: 703 ILDEIGRGTSTVDGYSIARAVLEFLHGKGKSGPRTLFATHFHELVDVEATLKRVRNYHLA 762 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL-KTFEKLYHHNQKDM 850 V ++ +IF ++IPG D SYGI V LAG+P V RA IL + + Y K Sbjct: 763 VQETGTDVIFTRQLIPGATDKSYGIHVATLAGVPRKVTDRATAILAEVMGREYSTTPKKA 822 Query: 851 R-----LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 R L PE + E V+ ++ +N D+++PL AL+ LYA+K Sbjct: 823 RYTQMLLISPESEAVEHPA---------VKALRGINPDDLTPLQALQALYALK 866 >gi|127555|sp|P27345|MUTS_AZOVI RecName: Full=DNA mismatch repair protein mutS gi|142306|gb|AAA16868.1| mutS [Azotobacter vinelandii] Length = 855 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 316/884 (35%), Positives = 485/884 (54%), Gaps = 38/884 (4%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E+L TPMM+QY ++K +PD L+FYRMGDFYELF++DA A++ L ITLT RG+ GK Sbjct: 2 ESLSQHTPMMQQYWKLKREHPDQLMFYRMGDFYELFYEDAKKAAKLLDITLTARGQSAGK 61 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H+ Y+ KL+K+G +AICEQI P K V R VVR++TPGT+ Sbjct: 62 SIPMAGIPFHSVEGYLAKLVKLGESVAICEQIGDPAT-----TKGPVERQVVRIITPGTV 116 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L AV + +A +DI++G F + + L++++ R++P E++ Sbjct: 117 SDEALLDERRDNLLAAVVGDERLFGLAILDITSGRFNVQEIQGWENLLAELERLNPAELL 176 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEK 257 + + + L + G A + FD + + + + FG + Sbjct: 177 YPDDWPAGL---PLEKRRGAHRRAPWDFDFDSAYKS--LCQQFATQDLKGFGCDGLGLAI 231 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA ++Y ++TQ P + E + T+ + A+R NLE+ LSG R+ +L Sbjct: 232 GAAGCLLAYARETQRTALPHLRGLRHERLDDTVILAGASRRNLELDVNLSGGRDNTLQSV 291 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 ID T G RL + PL D + R D++ +Q+ +Q LK DV R Sbjct: 292 IDRCQTAMGSRLLGRWLNRPLRDRAVLEARQDTVACLLQD-YRFESLQPQLKEIGDVERI 350 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 L+R+ + P+D+A +RD + + + + P L+ ++ P+ L + L Sbjct: 351 LARIGLRNARPRDLARLRDALAALPQLQTALSPLEAPH-LQALAGNIRTYPE-LAELLRR 408 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + D+ P RDGG L+ G DA LDE SL + + + + L+ + T + NLK+ +N Sbjct: 409 AIIDNPPAVIRDGGVLKQGYDAELDELLSLSENAGQFLMDLEAREKARTGLPNLKVGYNR 468 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IE+ A D +I RQT+ RF T EL E++ +A + AL Sbjct: 469 IHGYYIELPRVQAEQAPAD------YIRRQTLKGAERFITPELKAFEDKALSAKSRALAR 522 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E +E L +I Q L + +A +D+ LA A ++ RP ++ G Sbjct: 523 EKALYEELLEILIAQLAPLQETATALAELDVLANLAERALNLDFNRPRFVEEPCLRIRQG 582 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ L PF+AND +L D N+ ++ ++TGPNMGGKST++RQ ALIV++A Sbjct: 583 RHPVVEQVL----DTPFVANDLEL----DDNT-RMLIITGPNMGGKSTYMRQTALIVLLA 633 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GS+VPA + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ A+ +S V++DE Sbjct: 634 HIGSFVPAQSCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNASERSLVLMDE 693 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 +GRGT+T DGLS+AWA E+L R L ATH+ ELT L++S N L ++ NE Sbjct: 694 VGRGTSTFDGLSLAWAAAEHLAGL-RAWTLFATHYFELTVLAESQPVVANVHLSATEHNE 752 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY---Y 854 I+FLH V+PG A SYG+ V +LAG+P VISRA + L E ++ +R Sbjct: 753 RIVFLHHVLPGPASQSYGLAVAQLAGVPGPVISRAREHLARLEATSLPHEAPLREAGKPQ 812 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P IQ+ + + +E++ L D++SP AL+ LY+ K Sbjct: 813 PPIQS----DLFASLPHPLMEELARLKPDDLSPRQALELLYSWK 852 >gi|313108979|ref|ZP_07794954.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa 39016] gi|310881456|gb|EFQ40050.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa 39016] Length = 875 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 315/890 (35%), Positives = 489/890 (54%), Gaps = 52/890 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L TPMM+QY ++K +PD L+FYRMGDFYELF++DA A++ L ITLT RG+ GK Sbjct: 23 DLSQHTPMMQQYFKLKHQHPDQLMFYRMGDFYELFYEDAKKAAKLLDITLTARGQSGGKA 82 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM G+P H+A Y+ KL+K+G +AICEQI P +K V R VVR++TPGT++ Sbjct: 83 IPMAGIPFHSAEGYLAKLVKLGESVAICEQIGDPAT-----SKGPVERQVVRIITPGTVS 137 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIF 199 ++ LL N L A+ + +A +DI++G F + + L++++ R++P E++ Sbjct: 138 DEALLDERRDNLLAAILGDERLFGLAVLDITSGRFSVQEIKGWETLLAELERLNPAELLI 197 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + ++ V + + FD + + + + FG + Sbjct: 198 PD------DWPQGLPAEKRRGVRRRAPWDFDRDSAHKSLCQQFGTQDLKGFGCQNLTLAI 251 Query: 259 AAAAA-ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA ++Y K+TQ P + + + T+ +D A+R NLE+ LSG RE +L Sbjct: 252 GAAGCLLAYAKETQRTALPHLRSLRHDRLDDTVILDGASRRNLELDINLSGGRENTLQSV 311 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D T RL + + PL D + R +SI ++ N +Q LK D+ R Sbjct: 312 VDRCQTAMASRLMSRWLNRPLRDRAVLEARQESIACLLERYRFEN-LQPQLKEIGDLERI 370 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 L+R+ + P+D+A +RD + + ++ N + + P L+ + P+ L + L+ Sbjct: 371 LARIGLRNARPRDLARLRDALAALPDLQNAMTELEAP-HLQALATTIGTYPE-LAELLAK 428 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + D+ P RDGG ++ G DA LDE ++L + + + + L+ + T + NLK+ +N Sbjct: 429 AIIDNPPAVIRDGGVIKTGYDAELDELQALSENAGQFLMDLEAREKARTGLPNLKVGYNR 488 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GYFIE+ A D +I RQT+ RF T EL E++ +A + AL Sbjct: 489 IHGYFIELPRVQAEQAPAD------YIRRQTLKGAERFITPELKAFEDKALSAQSRALAR 542 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E +E L +I L +++ +A +D+ LA A + RP T ++ G Sbjct: 543 EKALYEELLERLIGHLAPLQDSASALAELDVLANLAERALNLDLNRPRFVEHTCLHIEQG 602 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ L+ PF+AND L ++ ++TGPNMGGKST++RQ ALIV++A Sbjct: 603 RHPVVEQVLE----TPFVANDLALDA-----DTRMLVITGPNMGGKSTYMRQTALIVLLA 653 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V++DE Sbjct: 654 HIGSFVPAARCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDE 713 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 +GRGT+T DGLS+AWA E L T R L ATH+ ELT L +S N L ++ NE Sbjct: 714 VGRGTSTFDGLSLAWAAAEDLART-RAFTLFATHYFELTVLPESQPAVANVHLNATEHNE 772 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--KLYHHNQKDMRLYYP 855 I+FLH V+PG A SYG+ V +LAG+P VI RA + LK E L H P Sbjct: 773 RIVFLHHVLPGPASQSYGLAVAQLAGVPTPVIQRAREHLKRLETTSLPHE--------MP 824 Query: 856 EIQTKESKNNLSKNDKLF-------VEKIKCLNLDEMSPLTALKTLYAVK 898 Q+ + + + + LF ++++ +N D++SP AL LYA K Sbjct: 825 SQQSGKPASPMQSD--LFASLPHPVIDELSRINPDDISPRQALDLLYAWK 872 >gi|229847188|ref|ZP_04467292.1| DNA mismatch repair protein [Haemophilus influenzae 7P49H1] gi|229809864|gb|EEP45586.1| DNA mismatch repair protein [Haemophilus influenzae 7P49H1] Length = 861 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 314/889 (35%), Positives = 495/889 (55%), Gaps = 44/889 (4%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 EEN + TPMM+QY+++K+ NPD+L+FYRMGDFYELF+DDA A+ L I+LTKRG+ G Sbjct: 4 EENFQQHTPMMQQYLKLKAENPDTLLFYRMGDFYELFYDDAKKAAALLDISLTKRGQSAG 63 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM G+P H Y+ KL+++G +AICEQI P +K V R +VR+VTPGT Sbjct: 64 QPIPMAGMPYHAVEGYLAKLVQLGESVAICEQIGDPATSK-----GPVERQIVRIVTPGT 118 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N + AV + + ++ +A +D+++G F++ ++ + L +++ RI P E+ Sbjct: 119 VSDEALLPERQDNLIAAVYQEKEKFGLATLDMTSGRFQLCEPADKETLRAELQRIVPVEL 178 Query: 198 IFSEK--ELSHAEY-KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 ++ E+ E++ E+ K L +P F+ S + + + + + FG Sbjct: 179 LYCEEFNEMAAIEHCKGLRR--------RPIWEFELSTAITLLNRQFGTKDLRAFG---- 226 Query: 255 VEKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS 309 VEK+ AA + Y K+TQ P I Q + +D+A R NLE+ + LSG Sbjct: 227 VEKSPLGLSAAGCLLQYAKETQRTALPHIQSISLIQNQDCIQLDAATRRNLELTQNLSGG 286 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 E +L +D +T G RL I P+ D K+ R +I + N L++ +Q L+ Sbjct: 287 TENTLASVLDKCVTPMGSRLLKRWIHQPIRDVEKLKQRQQAIAEIL-NFDLVDELQPYLQ 345 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 D+ R L+R+ + P+D+ +R + I L ++ L ++ + Sbjct: 346 LVGDMERILARVALRSARPRDLTRLRTALEQ-IPALRTIVQQKTSPFLTALFSQIADFSE 404 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 + L L + P RDGG + +G + LDE R L D + + + +L+ + E T I Sbjct: 405 QCD-LLQRALIETPPLLIRDGGVIAEGYNTELDEWRMLSDGATQYLENLEKRERESTGID 463 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LKI N GY+I+++ A ++ ++ RQT+ N R+ EL + E+++ Sbjct: 464 TLKIGFNAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKEYEDKVLK 517 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 + +AL +E + ++ L + ++ +L AS ++ +D+ + LA A NY P + Sbjct: 518 SKGAALALEKQLYDELFDLLLPHLGALQLASLALSELDVLVNLAERADTLNYVMPTFCDE 577 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 N +++GRHP+VE+ LK PFIAN +L+ ++ L ++TGPNMGGKST++RQ Sbjct: 578 VNVKIENGRHPVVEQVLK----DPFIANPVELN-----HNRHLLIITGPNMGGKSTYMRQ 628 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI ++A +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT Sbjct: 629 TALITLLAYIGSFVPADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATE 688 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 QS V++DEIGRGT+T DGLS+AWA E+L + R L ATH+ ELT L + L+ N Sbjct: 689 QSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLEGIVNIH 748 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 L + N I F+H V G A SYG+ V LAG+P +VI A L EK H+ Sbjct: 749 LDALEHNNSIAFMHAVQDGAASKSYGLAVAALAGVPQSVIKLAKQKLTQLEKNSSHSADQ 808 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E + + + E I+ L+ D++SP AL LY +K Sbjct: 809 QIQALREANHNQGELLFEQETDALREAIEKLDPDDLSPKQALAYLYQLK 857 >gi|116051617|ref|YP_789544.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa UCBPP-PA14] gi|122260760|sp|Q02R92|MUTS_PSEAB RecName: Full=DNA mismatch repair protein mutS gi|115586838|gb|ABJ12853.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa UCBPP-PA14] Length = 855 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 315/890 (35%), Positives = 489/890 (54%), Gaps = 52/890 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L TPMM+QY ++K +PD L+FYRMGDFYELF++DA A++ L ITLT RG+ GK Sbjct: 3 DLSQHTPMMQQYFKLKHQHPDQLMFYRMGDFYELFYEDAKKAAKLLDITLTARGQSGGKA 62 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM G+P H+A Y+ KL+K+G +AICEQI P +K V R VVR++TPGT++ Sbjct: 63 IPMAGIPFHSAEGYLAKLVKLGESVAICEQIGDPAT-----SKGPVERQVVRIITPGTVS 117 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIF 199 ++ LL N L A+ + +A +DI++G F + + L++++ R++P E++ Sbjct: 118 DEALLDERRDNLLAAILGDERLFGLAVLDITSGRFSVQEIKGWETLLAELERLNPAELLI 177 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + ++ V + + FD + + + + FG + Sbjct: 178 PD------DWPQGLPAEKRRGVRRRAPWDFDRDSAHKSLCQQFGTQDLKGFGCQNLTLAI 231 Query: 259 AAAAA-ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA ++Y K+TQ P + + + T+ +D A+R NLE+ LSG RE +L Sbjct: 232 GAAGCLLAYAKETQRTALPHLRSLRHDRLDDTVILDGASRRNLELDINLSGGRENTLQSV 291 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D T RL + + PL D + R +SI ++ N +Q LK D+ R Sbjct: 292 VDRCQTAMASRLMSRWLNRPLRDRAVLEARQESIACLLERYRFEN-LQPQLKEIGDLERI 350 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 L+R+ + P+D+A +RD + + ++ N + + P L+ + P+ L + L+ Sbjct: 351 LARIGLRNARPRDLARLRDALAALPDLQNAMTELEAP-HLQALATTIGTYPE-LAELLAK 408 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + D+ P RDGG ++ G DA LDE ++L + + + + L+ + T + NLK+ +N Sbjct: 409 AIIDNPPAVIRDGGVIKTGYDAELDELQALSENAGQFLMDLEAREKARTGLPNLKVGYNR 468 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GYFIE+ A D +I RQT+ RF T EL E++ +A + AL Sbjct: 469 IHGYFIELPRVQAEQAPAD------YIRRQTLKGAERFITPELKAFEDKALSAQSRALAR 522 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E +E L +I L +++ +A +D+ LA A + RP T ++ G Sbjct: 523 EKALYEELLERLIGHLAPLQDSASALAELDVLANLAERALNLDLNRPRFVEHTCLHIEQG 582 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ L+ PF+AND L ++ ++TGPNMGGKST++RQ ALIV++A Sbjct: 583 RHPVVEQVLE----TPFVANDLALDA-----DTRMLVITGPNMGGKSTYMRQTALIVLLA 633 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V++DE Sbjct: 634 HIGSFVPAARCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDE 693 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 +GRGT+T DGLS+AWA E L T R L ATH+ ELT L +S N L ++ NE Sbjct: 694 VGRGTSTFDGLSLAWAAAEDLART-RAFTLFATHYFELTVLPESQPAVANVHLNATEHNE 752 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--KLYHHNQKDMRLYYP 855 I+FLH V+PG A SYG+ V +LAG+P VI RA + LK E L H P Sbjct: 753 RIVFLHHVLPGPASQSYGLAVAQLAGVPTPVIQRAREHLKRLETTSLPHE--------MP 804 Query: 856 EIQTKESKNNLSKNDKLF-------VEKIKCLNLDEMSPLTALKTLYAVK 898 Q+ + + + + LF ++++ +N D++SP AL LYA K Sbjct: 805 SQQSGKPASPMQSD--LFASLPHPVIDELSRINPDDISPRQALDLLYAWK 852 >gi|152983937|ref|YP_001346903.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa PA7] gi|166232126|sp|A6V1G8|MUTS_PSEA7 RecName: Full=DNA mismatch repair protein mutS gi|150959095|gb|ABR81120.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa PA7] Length = 855 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 316/891 (35%), Positives = 490/891 (54%), Gaps = 54/891 (6%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L TPMM+QY ++K +PD L+FYRMGDFYELF++DA A++ L ITLT RG+ GK Sbjct: 3 DLSQHTPMMQQYFKLKHQHPDQLMFYRMGDFYELFYEDAKKAAKLLDITLTARGQSGGKA 62 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM G+P H+A Y+ KL+K+G +AICEQI P +K V R VVR++TPGT++ Sbjct: 63 IPMAGIPFHSAEGYLAKLVKLGESVAICEQIGDPAT-----SKGPVERQVVRIITPGTVS 117 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIF 199 ++ LL N L A+ + +A +DI++G F + + L++++ R++P E++ Sbjct: 118 DEALLDERRDNLLAAILGDERLFGLAVLDITSGRFSVQEIKGWETLLAELERLNPAELLI 177 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + ++ V + + FD + + + + FG + Sbjct: 178 PD------DWPQGLPAEKRRGVRRRAPWDFDRDSAHKSLCQQFGTQDLKGFGCQNLTLAI 231 Query: 259 AAAAA-ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA ++Y K+TQ P + + + T+ +D A+R NLE+ LSG RE +L Sbjct: 232 GAAGCLLAYAKETQRTALPHLRSLRHDRLDDTVILDGASRRNLELDINLSGGRENTLQSV 291 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D T RL + + PL D + R +SI ++ N +Q LK D+ R Sbjct: 292 VDRCQTAMASRLMSRWLNRPLRDRAVLEARQESIACLLERYRFEN-LQPQLKEIGDLERI 350 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 L+R+ + P+D+A +RD + + ++ N + + P L+ + P+ L + L+ Sbjct: 351 LARIGLRNARPRDLARLRDALAALPDLQNAMTELEAP-HLQALATTIGTYPE-LAELLAK 408 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + D+ P RDGG ++ G DA LDE ++L + + + + L+ + T + NLK+ +N Sbjct: 409 AIIDNPPAVIRDGGVIKTGYDAELDELQALSENAGQFLMDLEAREKARTGLPNLKVGYNR 468 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GYFIE+ A D +I RQT+ RF T EL E++ +A + AL Sbjct: 469 IHGYFIELPRVQAEQAPAD------YIRRQTLKGAERFITPELKAFEDKALSAQSRALAR 522 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E +E L +I L +++ +A +D+ LA A + RP T ++ G Sbjct: 523 EKALYEELLERLIGHLAPLQDSASALAELDVLANLAERALNLDLNRPRFVEHTCLHIEQG 582 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ L+ PF+AND L ++ ++TGPNMGGKST++RQ ALIV++A Sbjct: 583 RHPVVEQVLE----TPFVANDLALDA-----DTRMLVITGPNMGGKSTYMRQTALIVLLA 633 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V++DE Sbjct: 634 HIGSFVPAARCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDE 693 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 +GRGT+T DGLS+AWA E L T R L ATH+ ELT L +S N L ++ NE Sbjct: 694 VGRGTSTFDGLSLAWAAAEDLART-RAFTLFATHYFELTVLPESQPAVANVHLNATEHNE 752 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--KLYHHNQKDMRLYYP 855 I+FLH V+PG A SYG+ V +LAG+P+ VI RA + LK E L H Sbjct: 753 RIVFLHHVLPGPASQSYGLAVAQLAGVPSPVIQRAREHLKRLETTSLPH----------- 801 Query: 856 EIQTKESKNNLSK-NDKLF-------VEKIKCLNLDEMSPLTALKTLYAVK 898 E+ +++S S LF ++++ +N D++SP AL LYA K Sbjct: 802 EVPSQQSGKPASPMQSDLFASLPHPVIDELSRINPDDISPRQALDLLYAWK 852 >gi|229845541|ref|ZP_04465669.1| DNA mismatch repair protein [Haemophilus influenzae 6P18H1] gi|229811557|gb|EEP47258.1| DNA mismatch repair protein [Haemophilus influenzae 6P18H1] Length = 861 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 314/889 (35%), Positives = 495/889 (55%), Gaps = 44/889 (4%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 EEN + TPMM+QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG+ G Sbjct: 4 EENFQQHTPMMQQYLKLKAENPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGQSAG 63 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM G+P H Y+ KL+++G +AICEQI P +K V R +VR+VTPGT Sbjct: 64 QPIPMAGMPYHAVEGYLAKLVQLGESVAICEQIGDPTTSK-----GPVERQIVRIVTPGT 118 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N + AV + + ++ +A +D+++G F++ ++ + L +++ RI P E+ Sbjct: 119 VSDEALLPERQDNLIAAVYQEKEKFGLATLDMTSGRFQLCEPADKETLRAELQRIAPVEL 178 Query: 198 IFSEK--ELSHAEY-KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 ++ E+ E++ E+ K L +P F+ S + + + + + FG Sbjct: 179 LYCEEFNEMAAIEHCKGLRR--------RPIWEFELSTAITLLNRQFGTKDLRAFG---- 226 Query: 255 VEKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS 309 VEK+ AA + Y K+TQ P I Q + +D+A R NLE+ + LSG Sbjct: 227 VEKSPLGLSAAGCLLQYAKETQRTALPHIQSISLIQNQDCIQLDAATRRNLELTQNLSGG 286 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 E +L +D +T G RL I P+ D K+ R +I + N L++ +Q L+ Sbjct: 287 TENTLASVLDKCVTPMGSRLLKRWIHQPIRDVEKLKQRQQTITEIL-NFDLVDELQPYLQ 345 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 D+ R L+R+ + P+D+ +R + I L ++ P L ++ + Sbjct: 346 LVGDMERILARVALRSARPRDLTRLRTALEQ-IPALRTIVQQKTPLFLTALFSQIADFSK 404 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 + L L + P RDGG + +G A LDE R L D + + + +L+ + E T I Sbjct: 405 QCD-LLQRALIETPPLLIRDGGVIAEGYHAELDEWRMLSDGATQYLENLEKRERESTGID 463 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LKI N GY+I+++ + ++ ++ RQT+ N R+ EL + E+++ Sbjct: 464 TLKIGFNAVHGYYIQISQGQSH------KAPIHYVRRQTLKNAERYIIPELKEYEDKVLK 517 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 + +AL +E + ++ L + ++ +L AS ++ +D+ + LA A NY P + Sbjct: 518 SKGAALALEKQLYDELFDLLLPHLGTLQLASLALSELDVLVNLAERADTLNYVMPTFCDE 577 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 + +++GRHP+VE+ LK PFIAN +L+ ++ L ++TGPNMGGKST++RQ Sbjct: 578 VSVKIENGRHPVVEQVLK----DPFIANPVELN-----HNRHLLIITGPNMGGKSTYMRQ 628 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI ++A +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT Sbjct: 629 TALITLLAYIGSFVPADNARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATE 688 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 QS V++DEIGRGT+T DGLS+AWA E+L + R L ATH+ ELT L + L+ N Sbjct: 689 QSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLEGIANIH 748 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 L + N I F+H V G A SYG+ V LAG+P +VI A L EK H+ Sbjct: 749 LDALEHNNTIAFMHAVQDGAASKSYGLAVAALAGVPQSVIKLAKQKLTQLEKTSGHSADQ 808 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E + + + E I+ L+ D++SP AL LY +K Sbjct: 809 QIQALREANHNQGELLFEQETDALREAIEKLDPDDLSPKQALAYLYQLK 857 >gi|71282195|ref|YP_270792.1| DNA mismatch repair protein MutS [Colwellia psychrerythraea 34H] gi|90109844|sp|Q47WN0|MUTS_COLP3 RecName: Full=DNA mismatch repair protein mutS gi|71147935|gb|AAZ28408.1| DNA mismatch repair protein MutS [Colwellia psychrerythraea 34H] Length = 872 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 325/899 (36%), Positives = 500/899 (55%), Gaps = 55/899 (6%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 ++L S TPMMRQY+ IK+ P +L+FYRMGDFYELFFDDA AS L I+LT RGK G Sbjct: 6 KDLSSHTPMMRQYLTIKAEFPHTLIFYRMGDFYELFFDDAKKASDLLDISLTARGKTGGN 65 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H A +Y+ KL+ +G +AICEQI P +K V R VVR++TPGT+ Sbjct: 66 AIPMAGVPYHAAENYLAKLVALGESVAICEQIGDPATSK-----GPVERKVVRVITPGTV 120 Query: 140 TEDQLLSPTDSNYLMAV-------ARIRTE----WAIAWIDISTGIFKIS-TSNHDRLIS 187 +++ LL N ++A+ A+++T + +A++D+++G F ++ ++L + Sbjct: 121 SDEALLVDRQDNLIVAIVDNQSPNAKLKTSSAPAFGLAYLDMASGRFVLTEPQTAEQLQA 180 Query: 188 DIMRIDPREIIFSE--KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITT 245 ++ R+ P E+++SE ++ S E + +P FD + S + ++ Sbjct: 181 ELQRLSPAELLYSESLQDFSLIEQRKGLRR-------RPEWEFDLDTAISLLNKQFDTKE 233 Query: 246 VDTFGSFSQVEKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILR 304 + FG + AAA + Y+K TQ P I E + +D+A R NLE+ + Sbjct: 234 LTGFGVDDKPLGLAAAGCLFQYVKDTQRTALPHIRAIVCESANKGVVLDAATRRNLELTQ 293 Query: 305 TLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPI 364 L G + +L +D S T G RL + PL D T +N R ++++ I LI PI Sbjct: 294 NLHGGLDNTLAAILDKSSTPMGSRLLKRWLHFPLRDLTVLNNRQNTVSDIIALD-LIAPI 352 Query: 365 QKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEE----LRGA 420 Q +LK D+ R +SR+ +G P+D A +R ++ + N LK+ L E L Sbjct: 353 QPLLKGLGDIERIVSRIALGSARPRDFARLRHALQQLPELQN-ELKSGLTESPTNYLATI 411 Query: 421 VEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 ++ + +PQ LE L + ++ P RDGG + G + LD R L D + +A L+ Sbjct: 412 AQQSQPMPQ-LEGLLVHAIVENPPVLIRDGGVIAPGYNNELDVLRDLSDGATEFLAQLEQ 470 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 + E T I +LK+ +N G+FIE++ ++A ++ D +I RQT+ N RF T EL Sbjct: 471 REKERTGIHSLKVGYNRVHGFFIEMSRTAA------VDVPDDYIRRQTLKNNERFITEEL 524 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 E ++ +A + L +E ++ L + ++ L SQ IA +D+ A A N Sbjct: 525 KQHEEKVLSAQSKFLALEKSLYQELFDKVLPDLAQLQQLSQAIAELDVLTTFAERALALN 584 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 Y +P + + GRH +VE Q ++ FIAN L+ K+ ++TGPNM Sbjct: 585 YVKPSLVEEPGISIDAGRHVVVE----QMTNDAFIANPVLLT-----EQRKMLIITGPNM 635 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GGKST++RQ ALIV++A +G YVPA A IG+VD++F+R+G++D+LASGRSTFMVEM ET Sbjct: 636 GGKSTYMRQTALIVLLAHIGCYVPADNATIGLVDRIFTRIGASDDLASGRSTFMVEMTET 695 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 A+IL+ AT++S V+LDEIGRGT+T DGLS+AWA E L + L ATH+ ELT L+ Sbjct: 696 ANILHNATDKSLVLLDEIGRGTSTYDGLSLAWACAEMLALKTKAFTLFATHYFELTLLAG 755 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N L + ++ I+F+H V G A S+G+QV +LAG+P TVI RA L E Sbjct: 756 QISTLANVHLDAMEHDDNIVFMHAVQEGAASKSFGLQVAQLAGVPKTVIKRAKQRLSELE 815 Query: 841 KLYHHNQKDMRLYYPEIQTKESKN-NLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + Q+ + IQ + + + + V + +++E+SP AL L+++K Sbjct: 816 Q-----QQTPSILPAPIQNDAFEQLSFAPEEHSVVTTLIDTDINELSPRQALDLLFSLK 869 >gi|193213813|ref|YP_001995012.1| DNA mismatch repair protein MutS [Chloroherpeton thalassium ATCC 35110] gi|193087290|gb|ACF12565.1| DNA mismatch repair protein MutS [Chloroherpeton thalassium ATCC 35110] Length = 880 Score = 522 bits (1345), Expect = e-146, Method: Compositional matrix adjust. Identities = 301/840 (35%), Positives = 474/840 (56%), Gaps = 45/840 (5%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 +++ K TPMMRQY +IKS P ++ +R+GDFYE FFDDA S L I LT+R Sbjct: 6 IQKGKKDETPMMRQYDKIKSQYPGVILLFRVGDFYETFFDDAKAVSEALNIVLTRRSNGS 65 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 ++PM G P H A +Y+ +L+K G R+A+C+Q+E P A+ +V+R V +VTPG Sbjct: 66 SAEVPMAGFPHHAAENYVARLVKRGFRVALCDQVEDPKFAR-----GVVKREVTDIVTPG 120 Query: 138 TLTEDQLLSPTDSNYLMAVA-----RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRI 192 D++L +NYL AV R R +A+ID++T F+++ L + + Sbjct: 121 VNFNDRILDEKRNNYLCAVHFAEIDRKREISGVAFIDVTTAEFQVAEVPLSGLKDLLQTV 180 Query: 193 DPREIIFSEKELSHAEYKSLFETLGNVAVAQPNV------FFDHSISESRIADYYNITTV 246 P E+I S+K +S ++L N+ + N F H +E + + ++ Sbjct: 181 QPAEVIISKKN------RSWKDSLRNMTYEELNFTELDEWMFSHDFAEQTLLGQFKTHSL 234 Query: 247 DTFG--SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILR 304 FG FS K AA+ ++Y+++TQ I R + + +D + NLEIL Sbjct: 235 KGFGVEEFS-AGKVAASVILNYLEETQRGKLQYIKKISRFETADHIALDPQTKRNLEILY 293 Query: 305 TL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINP 363 + +G+RE +L+ ID ++T G RL + + P ++I RLD++ F+ L Sbjct: 294 AMQTGAREGTLIDVIDKTVTAMGARLLKKWVGRPSRRMSQIQNRLDAVEVFLTRKDLKAN 353 Query: 364 IQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAV 421 +++ KS D+ R L+R+ GR PK++ + + + L+ + P EL+ Sbjct: 354 LREAFKSICDMERVLARIATGRANPKEVLSLGGSLAQVPDFKAALLEIETPLVAELQNG- 412 Query: 422 EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLK 481 L P+ E+ + ++ + P DG +R+G +A LDE RSL +K ++ +Q Sbjct: 413 --LTATPELTEEIFRA-INPETPATLNDGNVIREGYNAELDELRSLAGSAKEMLQKVQAD 469 Query: 482 YAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELI 541 ++T I +LK++ N GY+IEV+ +++ + D + +QT+ N R+T L Sbjct: 470 ERKKTGISSLKVQFNRVFGYYIEVSKANSEKVP------DYYEKKQTLVNAERYTIPILK 523 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 + E +I A + +E E F L I E +E++ ++ IA +D + A LA++ NY Sbjct: 524 EYEEKILTAEERRITLEQELFSALRQRIAEDAETIQADAEHIATLDCLCSYAELAEKSNY 583 Query: 602 CRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 +P I + +K+GRHP++EK + + ++ NDC L ++ ++TGPNM Sbjct: 584 VKPEIHENDVIDIKNGRHPVLEKIMP--IDRKYVPNDCRLDVET-----RVQIITGPNMS 636 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKS+FLRQ LIV++AQ GSYVPA A IG+VDK+F+RVG++DNLA+G STF+VEM E A Sbjct: 637 GKSSFLRQVGLIVLLAQAGSYVPAESASIGLVDKIFTRVGASDNLAAGESTFLVEMNEAA 696 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS 781 +ILN T QS ++LDEIGRGT+T DG+SIAWA E++H+ + L ATH+HEL +L + Sbjct: 697 NILNNGTAQSLILLDEIGRGTSTYDGMSIAWAMTEFIHDAIGAKTLFATHYHELAELEEQ 756 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 L R N V ++ + +IFL K++ G AD+SYGI+V K+AGLP+ VISRA IL E+ Sbjct: 757 LVRVKNFNATVEETEDTVIFLRKIVRGAADNSYGIEVAKMAGLPDKVISRAKAILAELEE 816 >gi|261210106|ref|ZP_05924404.1| DNA mismatch repair protein MutS [Vibrio sp. RC341] gi|260840871|gb|EEX67413.1| DNA mismatch repair protein MutS [Vibrio sp. RC341] Length = 845 Score = 522 bits (1345), Expect = e-146, Method: Compositional matrix adjust. Identities = 309/875 (35%), Positives = 481/875 (54%), Gaps = 37/875 (4%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY+ +K+ NPD L+FYRMGDFYELF+DDA AS L I+LTKRG G+ IPM GVP Sbjct: 1 MMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRGASAGEPIPMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+T++ LLS Sbjct: 61 FHAVEGYLAKLVQMGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTVTDEALLSE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKELSH 206 N + A+ + A +DI++G F++S + + +++ R PRE++F E Sbjct: 116 RVDNLIAAIYHHNGRFGYATMDITSGRFQLSEPQTEEEMAAELQRTSPRELLFPE---DF 172 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAIS 265 + + GN +P F+ ++ ++ + + FG +++ AA I Sbjct: 173 SPVHLMASRQGNRR--RPIWEFELDTAKQQLNQQFGTRDLIGFGVEQAKLGLCAAGCLIQ 230 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y+K TQ P I + ++ +D+A R NLE+ L+G + +L +D+ T Sbjct: 231 YVKDTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTYNLAGGTDNTLADVLDHCATPM 290 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 G R+ I P+ D+ +N RLD+I ++ L + +LK D+ R L+RL + Sbjct: 291 GSRMLKRWIHQPMRDNATLNQRLDAITE-LKETALYGELHPVLKQIGDIERILARLALRS 349 Query: 386 GEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 P+D+A +R ++ + ++ LK ELR E + L LE+ + ++ Sbjct: 350 ARPRDLARLRHAMQQLPELHSVMSELKQPHLTELRTHAEPMDALCDLLERAIK----ENP 405 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P RDGG + DG A LDE R L + + + L+ + + I LK+ +NN G++I Sbjct: 406 PVVIRDGGVIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNNVHGFYI 465 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 +V+ + ++ ++ RQT+ N R+ EL E+++ N+ + AL +E + +E Sbjct: 466 QVSRGQSHLVPP------HYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQLWE 519 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L + ++ E L + IA +D+ LA A+ YCRP + + GRHP+VE Sbjct: 520 ELFDLLLPHLEQLQQLAASIAQLDVLQNLAERAESLEYCRPTLVKEAGIRILGGRHPVVE 579 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 + + ++PFIAN +L+ ++ ++TGPNMGGKST++RQ ALI +MA +GSYV Sbjct: 580 QVM----NEPFIANPIELNPQR-----RMLIITGPNMGGKSTYMRQTALIALMAHIGSYV 630 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT+ S V++DEIGRGT+ Sbjct: 631 PAESAQIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATSHSLVLMDEIGRGTS 690 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DGLS+AWA+ E+L L ATH+ ELT+L SL N L + + I F+H Sbjct: 691 TYDGLSLAWASAEWLAREIGALTLFATHYFELTELPNSLPNLANVHLDAVEHGDSIAFMH 750 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESK 863 V G A S+G+ V LAG+P VI A L+ E L + + +I + S Sbjct: 751 AVQEGAASKSFGLAVAGLAGVPKPVIKNARAKLQQLELLSSQPAETRKPSRVDIANQLS- 809 Query: 864 NNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 L + + + L+ DE++P AL LY +K Sbjct: 810 --LIPEPSVVEQALAELDPDELTPRQALDALYRLK 842 >gi|149926791|ref|ZP_01915050.1| DNA mismatch repair protein [Limnobacter sp. MED105] gi|149824343|gb|EDM83561.1| DNA mismatch repair protein [Limnobacter sp. MED105] Length = 858 Score = 522 bits (1345), Expect = e-146, Method: Compositional matrix adjust. Identities = 308/884 (34%), Positives = 484/884 (54%), Gaps = 41/884 (4%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY+ +KS PD L+FYRMGDFYELFFDDA LA++ L ITLT RG+ G+ IPM GVP Sbjct: 1 MMQQYLTLKSEYPDKLLFYRMGDFYELFFDDAQLAAQLLRITLTHRGQSAGQPIPMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A+ Y+ KL+ +GH +AICEQ+ +P K + R V R+VTPGTLTE LL Sbjct: 61 FHAADQYLAKLVALGHSVAICEQVGTP-----GLTKGPMERKVARVVTPGTLTESTLLPD 115 Query: 148 TDSNYLMAV-ARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSH 206 ++ L+++ + W +A + +S G ++ + L + + R + E++ + + + Sbjct: 116 QENKTLLSLYSEDGKYWGVACLALSAGSIRLLECDSGSLAAHLSRFNAAEVLVNNRTFAQ 175 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSF-SQVEKTAAAAAIS 265 +S N + +P FD ++S + +++ +++ A AA+ Sbjct: 176 ---QSQITGGSNQCIERPAWHFDAGFAQSHLQSVLQAANLESLELHNAKLAIPAMGAALQ 232 Query: 266 YIKKTQMVNK--PTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 Y K+T + + + + E Q L +D AAR NLE+ TL G +L ++ + + Sbjct: 233 YAKETHLSIETFKHVSDIQVEHEQDFLVLDEAARRNLELTETLRGESAPTLFSRLNRTGS 292 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQN------PILINPIQKILKSSPDVPRS 377 G G R + + PL D I R I + P+ N + K L++ D+ R Sbjct: 293 GMGARRLRQWLLEPLRDIATIEARQKKIQHLLSTLGQAPEPVCFNLV-KTLRAMADIERI 351 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 SR+ + +P+D+ +R+ +++ + L + + + + P L L Sbjct: 352 SSRVAMQTAKPRDLLALRESLQALPQVAELI--SHFGDSAFETAQHAFQAPPELLAELMQ 409 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 L+++ P RDGG + DG A LDE R+++ S + + L+ + E T I NLK++ N Sbjct: 410 ALAENPPVLIRDGGVIADGYHAELDELRNIQTGSGQFLIELEKQEREATGIANLKVEFNR 469 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 G++IEV+S+ A + +I RQTM N R+ T EL E + +A + AL + Sbjct: 470 VHGFYIEVSSAQADKVPA------HYIRRQTMKNAERYITEELKAFEEKALSAKDKALNL 523 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E +E L + + + L ++ ++ +D ALAI+A E N+ RP + ++ G Sbjct: 524 EKVIYENLMAWLGQFTPFLQRCARELSELDAMAALAIVAFEANWVRPHMVPHALLNIQQG 583 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGK-LWLLTGPNMGGKSTFLRQNALIVIM 676 RHP++E ++Q F NDC L + GK + L+TGPNMGGKST++RQ ALI ++ Sbjct: 584 RHPVLEVQVEQ-----FTPNDCAL------HPGKHMALITGPNMGGKSTYMRQTALIALL 632 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A MGS+VPA+ A IG++D++F+R+G++D++A GRSTFMVEM E A+I+ QAT S VI+D Sbjct: 633 AHMGSFVPAASAQIGVLDRIFTRIGASDDIAGGRSTFMVEMTEAATIVRQATPSSLVIMD 692 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DGLS+AW + L TNRC L ATH+ E+T L L N L ++ Sbjct: 693 EIGRGTSTFDGLSLAWEIAKRLANTNRCLTLFATHYFEITALGHELDSVFNVHLSATEHQ 752 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY-YP 855 ++FLH++ G A SYG+QV KLAGLP V+ A L E + L+ P Sbjct: 753 GKLVFLHRIEAGPASQSYGLQVAKLAGLPALVVKNAQKRLDQLEAEKRAMTSQVDLFDIP 812 Query: 856 EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 T E N +++ L +EK+ ++ DE+SP AL+ ++ +K Sbjct: 813 TQDTVEQAPN-AQHVNLILEKLNEIDPDELSPREALQLIFQLKG 855 >gi|296387876|ref|ZP_06877351.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa PAb1] Length = 855 Score = 522 bits (1345), Expect = e-146, Method: Compositional matrix adjust. Identities = 315/890 (35%), Positives = 489/890 (54%), Gaps = 52/890 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L TPMM+QY ++K +PD L+FYRMGDFYELF++DA A++ L ITLT RG+ GK Sbjct: 3 DLSQHTPMMQQYFKLKHQHPDQLMFYRMGDFYELFYEDAKKAAKLLDITLTARGQSGGKA 62 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM G+P H+A Y+ KL+K+G +AICEQI P +K V R VVR++TPGT++ Sbjct: 63 IPMAGIPFHSAEGYLAKLVKLGESVAICEQIGDPAT-----SKGPVERQVVRIITPGTVS 117 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIF 199 ++ LL N L A+ + +A +DI++G F + + L++++ R++P E++ Sbjct: 118 DEALLDERRDNLLAAILGDERLFGLAVLDITSGRFSVQEIKGWETLLAELERLNPAELLI 177 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + ++ V + + FD + + + + FG + Sbjct: 178 PD------DWPQGLPVEKRRGVRRRAPWDFDRDSAHKSLCQQFGTQDLKGFGCQNLTLAI 231 Query: 259 AAAAA-ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA ++Y K+TQ P + + + T+ +D A+R NLE+ LSG RE +L Sbjct: 232 GAAGCLLAYAKETQRTALPHLRSLRHDRLDDTVILDGASRRNLELDINLSGGRENTLQSV 291 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D T RL + + PL D + R +SI ++ N +Q LK D+ R Sbjct: 292 VDRCQTAMASRLMSRWLNRPLRDRAVLEARQESIACLLERYRFEN-LQPQLKEIGDLERI 350 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 L+R+ + P+D+A +RD + + ++ N + + P L+ + P+ L + L+ Sbjct: 351 LARIGLRNARPRDLARLRDALAALPDLQNAMTELEAP-HLQALATTIGTYPE-LAELLAK 408 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + D+ P RDGG ++ G DA LDE ++L + + + + L+ + T + NLK+ +N Sbjct: 409 AIIDNPPAVIRDGGVIKTGYDAELDELQALSENAGQFLMDLEAREKARTGLPNLKVGYNR 468 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GYFIE+ A D +I RQT+ RF T EL E++ +A + AL Sbjct: 469 IHGYFIELPRVQAEQAPAD------YIRRQTLKGAERFITPELKAFEDKALSAQSRALAR 522 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E +E L +I L +++ +A +D+ LA A + RP T ++ G Sbjct: 523 EKALYEELLERLIGHLAPLQDSASALAELDVLANLAERALNLDLNRPRFVEHTCLHIEQG 582 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ L+ PF+AND L ++ ++TGPNMGGKST++RQ ALIV++A Sbjct: 583 RHPVVEQVLE----TPFVANDLALDA-----DTRMLVITGPNMGGKSTYMRQTALIVLLA 633 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V++DE Sbjct: 634 HIGSFVPAARCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDE 693 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 +GRGT+T DGLS+AWA E L T R L ATH+ ELT L +S N L ++ NE Sbjct: 694 VGRGTSTFDGLSLAWAAAEDLART-RAFTLFATHYFELTVLPESQPAVANVHLNATEHNE 752 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--KLYHHNQKDMRLYYP 855 I+FLH V+PG A SYG+ V +LAG+P VI RA + LK E L H P Sbjct: 753 RIVFLHHVLPGPASQSYGLAVAQLAGVPTPVIQRAREHLKRLETTSLPHE--------MP 804 Query: 856 EIQTKESKNNLSKNDKLF-------VEKIKCLNLDEMSPLTALKTLYAVK 898 Q+ + + + + LF ++++ +N D++SP AL LYA K Sbjct: 805 SQQSGKPASPMQSD--LFASLPHPVIDELSRINPDDISPRQALDLLYAWK 852 >gi|303253454|ref|ZP_07339596.1| DNA mismatch repair protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248649|ref|ZP_07530663.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302647698|gb|EFL77912.1| DNA mismatch repair protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306854860|gb|EFM87049.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 864 Score = 522 bits (1345), Expect = e-146, Method: Compositional matrix adjust. Identities = 314/891 (35%), Positives = 491/891 (55%), Gaps = 41/891 (4%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 + ++L TPMM QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG Sbjct: 1 MTQDLSKHTPMMAQYLQLKAQNPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGASA 60 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G+ IPM GVP H Y+ KL+ +G +AICEQI P +K V R VVR+VTPG Sbjct: 61 GEPIPMAGVPYHAVEGYLAKLVSLGESVAICEQIGDPAT-----SKGPVERKVVRIVTPG 115 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPRE 196 T++++ LL N + A+ + +AIA +D+++G F I+ N + L +++ R+ P E Sbjct: 116 TVSDEALLPERQDNLVAAIYEEKGVFAIATLDMTSGRFLITELPNKEALAAELQRLLPAE 175 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 I+++E + S AE + ++ L +P F+ + + + + ++ FG + V Sbjct: 176 ILYAE-DFSAAEILNNYKGLRR----RPVWEFELVTAINLLNRQFGTQSLAGFGVEKAVV 230 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA + Y ++TQ P I T+ +D+A R NLE+ + L+G E +L Sbjct: 231 ALCAAGCVLHYAQETQRTALPHINSIHLAQNSDTVLLDAATRRNLELTQNLAGGTENTLA 290 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D +T G RL I P+ D K+ R D I+ +Q I P+Q +L++ D+ Sbjct: 291 AVLDKCVTPMGSRLLKRWIHQPIRDLEKLKKRQDIIDT-LQKEQRIEPLQPLLQNVGDME 349 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN--DLPEELRGAVEKLKKLPQSLEK 433 R L+R+ + P+D+ +R + +I KN +L L V ++ + L Sbjct: 350 RILARVALRSARPRDLTRLRTALAQLPDIA----KNAKNLTASLDALVAQIGDFSE-LHA 404 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + + P RDGG + +G +A LDE R L + + + +L+++ E T I LKI Sbjct: 405 LLERAIIETPPQLIRDGGVIAEGYNAELDEWRELSAGATQYLENLEIREREATGIDTLKI 464 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GY+I+++ A ++ ++ RQT+ N R+ EL E+++ A + Sbjct: 465 GFNAVHGYYIQISQGQAH------KAPMHYVRRQTLKNAERYIIPELKTYEDKVLKAKGA 518 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 +L++E + ++ L + ++ + + A+ ++ +D+ LA A+ NY RP Sbjct: 519 SLVLEKQLYDELFDLLMPRLGEMQLAAMALSELDVLTNLAERAESLNYVRPTFSLQRGVN 578 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +K GRHP+VE+ LK PFIAN L+ L ++TGPNMGGKST++RQ ALI Sbjct: 579 IKGGRHPVVEQVLK----DPFIANPVFLNAQR-----HLLVVTGPNMGGKSTYMRQIALI 629 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT S V Sbjct: 630 SLMAYIGSFVPADSAEIGALDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATENSLV 689 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA E+L + + L ATH+ ELT L LK N L Sbjct: 690 LIDEIGRGTSTYDGLSLAWACAEWLAKKTQSLTLFATHYFELTSLPSQLKGVANVHLDAR 749 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL------YHHNQ 847 + + I+F+H V G A SYG+ V LAG+P VI A L E++ H N Sbjct: 750 EHQDSIVFMHSVQEGAASKSYGLAVAALAGVPKQVIQLAKQRLAHLEEISLQTKEAHDNP 809 Query: 848 KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L+ ++Q L + + ++ DE++P AL+ LY +K Sbjct: 810 QGDLLFAADLQETPQIQPLVAQQSELEKALMSIDPDELTPRQALEALYRLK 860 >gi|218890155|ref|YP_002439019.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa LESB58] gi|226723064|sp|B7V8C8|MUTS_PSEA8 RecName: Full=DNA mismatch repair protein mutS gi|218770378|emb|CAW26143.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa LESB58] Length = 855 Score = 522 bits (1345), Expect = e-146, Method: Compositional matrix adjust. Identities = 315/890 (35%), Positives = 490/890 (55%), Gaps = 52/890 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L TPMM+QY ++K +PD L+FYRMGDFYELF++DA A++ L ITLT RG+ GK Sbjct: 3 DLSQHTPMMQQYFKLKHQHPDQLMFYRMGDFYELFYEDAKKAAKLLDITLTARGQSGGKA 62 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM G+P H+A Y+ KL+K+G +AICEQI P +K V R VVR++TPGT++ Sbjct: 63 IPMAGIPFHSAEGYLAKLVKLGESVAICEQIGDPAT-----SKGPVERQVVRIITPGTVS 117 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIF 199 ++ LL N L A+ + +A +DI++G F + + L++++ R++P E++ Sbjct: 118 DEALLDERRDNLLAAILGDERLFGLAVLDITSGRFSVQEIKGWETLLAELERLNPAELLI 177 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + ++ + V + + FD + + + + FG + Sbjct: 178 PD------DWPQGLPSEKRRGVRRRAPWDFDRDSAHKSLCQQFGTQDLKGFGCQNLTLAI 231 Query: 259 AAAAA-ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA ++Y K+TQ P + + + T+ +D A+R NLE+ LSG RE +L Sbjct: 232 GAAGCLLAYAKETQRTALPHLRSLRHDRLDDTVILDGASRRNLELDINLSGGRENTLQSV 291 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D T RL + + PL D + R +SI ++ N +Q LK D+ R Sbjct: 292 VDRCQTAMASRLMSRWLNRPLRDRAVLEARQESIACLLERYRFEN-LQPQLKEIGDLERI 350 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 L+R+ + P+D+A +RD + + ++ N + + P L+ + P+ L + L+ Sbjct: 351 LARIGLRNARPRDLARLRDALAALPDLQNAMTELEAP-HLQALATTIGTYPE-LAELLAK 408 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + D+ P RDGG ++ G DA LDE ++L + + + + L+ + T + NLK+ +N Sbjct: 409 AIIDNPPAVIRDGGVIKTGYDAELDELQALSENAGQFLMDLEAREKARTGLPNLKVGYNR 468 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GYFIE+ A D +I RQT+ RF T EL E++ +A + AL Sbjct: 469 IHGYFIELPRVQAEQAPAD------YIRRQTLKGAERFITPELKAFEDKALSAQSRALAR 522 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E +E L +I L +++ +A +D+ LA A + RP T ++ G Sbjct: 523 EKALYEELLERLIGHLAPLQDSASALAELDVLANLAERALNLDLNRPRFVEHTCLHIEQG 582 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ L+ PF+AND L ++ ++TGPNMGGKST++RQ ALIV++A Sbjct: 583 RHPVVEQVLE----TPFVANDLALDA-----DTRMLVITGPNMGGKSTYMRQTALIVLLA 633 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V++DE Sbjct: 634 HIGSFVPAARCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDE 693 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 +GRGT+T DGLS+AWA E L T R L ATH+ ELT L +S N L ++ NE Sbjct: 694 VGRGTSTFDGLSLAWAAAEDLART-RAFTLFATHYFELTVLPESQPAVANVHLNATEHNE 752 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--KLYHHNQKDMRLYYP 855 I+FLH V+PG A SYG+ V +LAG+P VI RA + LK E L H P Sbjct: 753 RIVFLHHVLPGPASQSYGLAVAQLAGVPAPVIQRAREHLKRLETTSLPHE--------MP 804 Query: 856 EIQTKESKNNLSKNDKLF-------VEKIKCLNLDEMSPLTALKTLYAVK 898 Q+ + + + + LF ++++ +N D++SP AL LYA K Sbjct: 805 SQQSGKPASPMQSD--LFASLPHPVIDELSRINPDDISPRQALDLLYAWK 852 >gi|320329641|gb|EFW85630.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. glycinea str. race 4] Length = 859 Score = 522 bits (1345), Expect = e-146, Method: Compositional matrix adjust. Identities = 315/887 (35%), Positives = 490/887 (55%), Gaps = 46/887 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L S TPMM+QY ++K+ + D L+FYRMGDFYE+F++DA A++ L ITLT RG+ G+ Sbjct: 7 DLSSHTPMMQQYWKLKNQHLDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQS 66 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCG+P H A Y+ KL+K+G + ICEQI P +K V R VVR++TPGT++ Sbjct: 67 IPMCGIPYHAAEGYLAKLVKLGESVVICEQIGDPATSK-----GPVDRQVVRIITPGTIS 121 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIF 199 ++ LL N + AV + +A +DI++G F + + L++++ RI+P E++ Sbjct: 122 DEALLDERRDNLIAAVLGDERLFGLAVLDITSGNFSVLEIKGWENLLAELERINPVELLI 181 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 + + L A + F+ + + ++ + FG + Sbjct: 182 PDDW-----PQGLPAEKRRGARRRAPWDFERDSAHKSLCQQFSTQDLKGFGCENLTLAIG 236 Query: 260 AAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA + SY K+TQ P + E + T+ +D+A+R NLE+ LSG R+ +L + Sbjct: 237 AAGCLLSYAKETQRTALPHLRSLRHERLDDTVILDAASRRNLELDTNLSGGRDNTLQSVM 296 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D T G RL + PL D T + R SI F++ N +Q LK D+ R L Sbjct: 297 DRCQTAMGTRLLTRWLNRPLRDLTILQARQTSITCFLERYRFEN-LQPQLKEIGDIERIL 355 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 +R+ + P+D+A +RD + S + L + + L+ + P+ L L Sbjct: 356 ARIGLRNARPRDLARLRDAL-SALPELQQAMTDLEAPHLQQLAQTASTYPE-LADLLQRA 413 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + D+ P RDGG L+ G DA LD+ +SL + + + + L+ + T + NLK+ +N Sbjct: 414 IIDNPPAVIRDGGVLKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLANLKVGYNRV 473 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GYFIE+ S A D +I RQT+ RF T EL + E++ +A + AL E Sbjct: 474 HGYFIELPSKQAEQAPAD------YIRRQTLKGAERFITPELKEFEDKALSAKSRALARE 527 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 +E L +I L + + +A +D+ LA A + P ++ GR Sbjct: 528 KMLYEALLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLDLNCPRFVAEPCMRIEQGR 587 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ L S PF+AND L +S ++ ++TGPNMGGKST++RQ ALIV++A Sbjct: 588 HPVVEQVL----STPFVANDLALD-----DSTRMLVITGPNMGGKSTYMRQTALIVLLAH 638 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V++DE+ Sbjct: 639 IGSFVPAASCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEV 698 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGLS+AWA E L + R L ATH+ ELT L +S N L ++ NE Sbjct: 699 GRGTSTFDGLSLAWAAAECLAQL-RAYTLFATHYFELTVLPESEPLVSNVHLNATEHNER 757 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 I+FLH+V+PG A SYG+ V +LAG+P VISRA + L+ E L + + + Sbjct: 758 IVFLHRVLPGPASQSYGLAVAQLAGVPGKVISRAKEHLQRLET--------TSLPHEQPR 809 Query: 859 TKESKNNLSKNDKLF-------VEKIKCLNLDEMSPLTALKTLYAVK 898 TK K + + +F ++++ + +D+M+P AL LY ++ Sbjct: 810 TKPGKPAVPQQSDMFASLPHPVLDELSKVKVDDMTPRQALDLLYTLQ 856 >gi|311693938|gb|ADP96811.1| DNA mismatch repair protein MutS [marine bacterium HP15] Length = 876 Score = 522 bits (1345), Expect = e-146, Method: Compositional matrix adjust. Identities = 313/894 (35%), Positives = 483/894 (54%), Gaps = 43/894 (4%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L TPMM+QY++IK +P+ LVFYRMGDFYELF++DA A+ + ITLT RG+ G Sbjct: 7 DLSKHTPMMQQYLKIKGQHPNELVFYRMGDFYELFYEDAKKAAELMDITLTARGQSGGNP 66 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM G+P H++ YI +L++ G IAICEQI P +K V R VVR+VTPGTL+ Sbjct: 67 IPMAGIPYHSSEGYIARLVRAGQSIAICEQIGDPATSK-----GPVDRQVVRIVTPGTLS 121 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIF 199 +D L N L+A+ R ++ A +DIS+G F +S N + L ++ R+ P EI+ Sbjct: 122 DDAYLEDRRDNLLVAIYNHREQFGFASLDISSGRFAVSELENLEALQGELQRLRPAEILI 181 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKT 258 SE Y+ + E + P F+ + I + + FG + Sbjct: 182 SED----FPYEDVLEGFTGIRRQGP-WLFESDTARRVITHQLQVRDLTGFGCEELNLAVC 236 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA + Y K+TQ P I RE + +D+A+R NLEI L G + +L + Sbjct: 237 AAGCLLQYAKETQRTALPHIRKLTRERRDEAVILDAASRRNLEIDTNLMGGHQYTLAWVM 296 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D + T GGR + PL D + R +++ + P+ +LK+ D+ R L Sbjct: 297 DRTATSMGGRELRRWLNRPLRDVEIVRQRQQAVSALLDG-FHYEPVHDLLKAVGDIERVL 355 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 +R+ + P+D+A +RD ++ ++ + +R A + + P+ L L Sbjct: 356 ARVALRSARPRDLARLRDAFQALPDLQETLKPVNSHHVVRLAT-IIGEYPE-LADLLERA 413 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + D+ P R+GG +R+G D LDE R++ + + + + ++ + + T I LK+ +N Sbjct: 414 IIDNPPVVIREGGVIREGFDEELDELRNISENAGQYLLDVETRERDRTGISTLKVGYNRV 473 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IE++ + + D +I RQT+ N RF T EL + E++ +A + AL E Sbjct: 474 HGYYIEISRAQSDQAPVD------YIRRQTLKNAERFITPELKEFEDKALSAKSRALARE 527 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 ++ + + Q L +A+Q +A +D+ A A + P S F +++GR Sbjct: 528 KGLYDDVLETVAGQLAPLQDAAQALAELDVLSNFAERATSLRFSAPEFSESPGFDIEEGR 587 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ L + PF+ ND + ++ ++TGPNMGGKST++RQ ALI ++A Sbjct: 588 HPVVEQLLDE----PFVPNDLLMDTQR-----RMLVITGPNMGGKSTYMRQAALIALLAY 638 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 GS+VPA+ A IG VD++F+R+GS+D++A GRSTFMVEM ETA+IL+ AT S V++DE+ Sbjct: 639 TGSFVPANRAVIGPVDRIFTRMGSSDDIAGGRSTFMVEMTETANILHNATEHSLVLMDEV 698 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGLS+AWAT E+L RC L ATH+ ELT L+ L+ N L ++ ++ Sbjct: 699 GRGTSTFDGLSLAWATAEHLAREIRCYTLFATHYFELTQLADELQHAVNVHLTATEHDDS 758 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE---------KLYHHNQKD 849 I+FLH V G A SYG+QV KLAG+P VI A L E + Sbjct: 759 IVFLHNVHDGPASQSYGLQVAKLAGVPQDVIRNAKTQLSHLEGSASPAAPAASAAEQGNN 818 Query: 850 MRLYYPEIQTKES--KNNL--SKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 L P + ES + ++ S E +K ++LD ++P A+ LY +KA Sbjct: 819 ASLAKPATKVNESVYQGDMFASLEPSAVEEALKDMDLDGLTPRDAMNQLYELKA 872 >gi|262273679|ref|ZP_06051492.1| DNA mismatch repair protein MutS [Grimontia hollisae CIP 101886] gi|262222094|gb|EEY73406.1| DNA mismatch repair protein MutS [Grimontia hollisae CIP 101886] Length = 870 Score = 522 bits (1345), Expect = e-145, Method: Compositional matrix adjust. Identities = 310/879 (35%), Positives = 489/879 (55%), Gaps = 39/879 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY++IK+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IPM G Sbjct: 24 TPMMQQYLKIKAQHPEELLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPMAG 83 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+ Y+ +L+++G +AICEQI P +K V R VVR+VTPGT++++ LL Sbjct: 84 VPYHSVEGYLARLVQLGESVAICEQIGDPAT-----SKGPVERQVVRIVTPGTVSDEALL 138 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKEL 204 S N + A+ + A +DI++G F + + + + +++ R P E+++ E Sbjct: 139 SERVDNLIAAIFAHGERFGYATLDITSGRFLLCEPATEEEMQAELQRTRPAELLYPE--- 195 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 + + +L ET + +P FD ++ ++ + + FG AAA + Sbjct: 196 -NFAFPALTETCKG-SRRRPIWEFDLETAKQQLNQQFGTRDLVGFGVEECALGLAAAGCL 253 Query: 265 -SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 Y+K TQ + P I +E+ ++ +D+A R NLE+ + LSG E +L +D + T Sbjct: 254 MQYVKDTQRTSLPHIRSLVKENKDQSVILDAATRRNLELTQNLSGGLENTLASVLDRTTT 313 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL + P+ D +N RLD+I + ++ + L+ D+ R L RL I Sbjct: 314 PMGSRLLKRWLHQPMRDFKIVNRRLDAITALKDTGLYVD-LAAALRPVGDMERILGRLAI 372 Query: 384 GRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 P+D+A +R ++ I +L +++ L+ A + +L + LE+ + + Sbjct: 373 RSARPRDMARLRGALQQLPEIESLLEEVQDSAITPLKTASAPMPELAELLERAIV----E 428 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 P RDGG + G +A LDE R L D + R + L+ + + I LK+ N G+ Sbjct: 429 APPVVIRDGGVIAPGYNAELDEWRDLADGATRYLEELEARERDRHDIDTLKVGFNQVHGF 488 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +I+V+ + ++ ++ RQT+ N R+ EL + E+++ N+ + AL +E + Sbjct: 489 YIQVSRGQSHLVPP------YYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALALEKKL 542 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 +E L + ++ E L A+ ++ +D+ LA A+ NYCRP + + + GRHP+ Sbjct: 543 WEELFDQLLPHLEKLQLAADALSTLDVLANLAERAESLNYCRPTLTETRGIDIAGGRHPV 602 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE+ + PFIAN L P+ + + ++TGPNMGGKST++RQ ALI +MA +GS Sbjct: 603 VEQVM----DAPFIANPTALH-PDRR----MLIITGPNMGGKSTYMRQTALITLMAHIGS 653 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 YVPA A +G VD++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V++DEIGRG Sbjct: 654 YVPAESATMGPVDRIFTRIGASDDLASGRSTFMVEMTETANILHNATENSLVLMDEIGRG 713 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 T+T DGLS+AWA+ E+L E + L ATH+ ELT+L+ + N L + + I F Sbjct: 714 TSTYDGLSLAWASAEWLAEKLKAMTLFATHYFELTELAGQVPGLVNVHLDAVEHGDEIAF 773 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKE 861 +H V G A SYG+ V LAG+P VI RA L+ E H ++ + Sbjct: 774 MHAVQEGAASKSYGLAVAGLAGVPKAVIQRAKTKLRQLEASGHEVVTGEHTTSHQVAAQL 833 Query: 862 S-KNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 S LS+ +K + L D ++P AL LY +KA Sbjct: 834 SLLPELSEAEKALAD----LEPDNLTPRQALDALYRLKA 868 >gi|332994257|gb|AEF04312.1| DNA mismatch repair protein [Alteromonas sp. SN2] Length = 877 Score = 522 bits (1345), Expect = e-145, Method: Compositional matrix adjust. Identities = 322/917 (35%), Positives = 494/917 (53%), Gaps = 91/917 (9%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MMRQY+ IK+ +P+ L+FYRMGDFYELFFDDA A+ L I+LT RGK G IPM GVP Sbjct: 1 MMRQYLTIKAQHPNILMFYRMGDFYELFFDDAKKAAELLDISLTARGKSGGDPIPMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H Y+ +L+K+G +AICEQ+ P +K V R V R+VTPGT+T++ LL Sbjct: 61 YHAVESYLARLVKMGESVAICEQVGDPATSK-----GPVERQVQRIVTPGTVTDEALLEE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSEKELSH 206 N L AV + +A +D+++G F + D L+ ++ RI+P E+++ E Sbjct: 116 RRDNVLAAVCGHSMHYGVATLDVTSGRFVVVECDTDDALLGELQRINPAELLYPEG---- 171 Query: 207 AEYKSLFETLGNVAVAQ-----PNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT--A 259 FE+L + + P FD + ++ + + FG S + K A Sbjct: 172 ------FESLPLIEQRKGLRRRPEWEFDIDTATEQLTAQFQTKELAGFG-VSDLTKGIGA 224 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A + Y+K TQ P I ++E S + +D+A R NLE+ L+G E +L +D Sbjct: 225 AGCVLQYVKDTQRTALPHIRRIQKEQQDSRVQLDAATRRNLELTHNLAGGIENTLFSVMD 284 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL I SP+TD +++ R D+I I N + I+ LK+ D+ R ++ Sbjct: 285 TTTTAMGSRLLQRYIHSPITDQHELHNRQDAIEALIDNEP--DAIRGHLKTIGDIERIMA 342 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGA--VEKLKKLPQS----- 430 RL + P+D A +++ + N LP +E GA V +L +L Q+ Sbjct: 343 RLALRSARPRDFARLKNAL------------NTLPDLQEALGAYNVAQLNELKQAVSTYP 390 Query: 431 -LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 L+ L++ + D+ P RDGG + +G ++ LDE R L + + +++ + E T I Sbjct: 391 ELQALLNNAIIDNPPVVIRDGGVIAEGFNSELDELRKLSQGATDYLDAMEQRERERTGIS 450 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LK+ +N G+FIE++ +++ ++ +I RQT+ N RF T EL + E+++ Sbjct: 451 TLKVGYNRVHGFFIEISRANSD------KAPAEYIRRQTLKNTERFITPELKEHEDKVLT 504 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 + AL +E + +E L + + +L + +A +D+ A A ++ RP + Sbjct: 505 SQGRALALEKQLYEALFDEVAPSLNALIETAAALAKLDVLCCFAERALSLDWYRPTLSME 564 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 + ++GRHP+VE+ +K PFIAN L+ +S ++ ++TGPNMGGKST++RQ Sbjct: 565 SALTYEEGRHPVVEQVMKD----PFIANPLTLN-----DSQRMLIITGPNMGGKSTYMRQ 615 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI ++A +GSYVPA AHIG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT Sbjct: 616 TALIALLAYIGSYVPAQNAHIGKIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATE 675 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 S V++DEIGRGT+T DGLS+AWA YL + L ATH+ ELT+L + K N Sbjct: 676 HSLVLMDEIGRGTSTYDGLSLAWACASYLAQKLNAYTLFATHYFELTELPDTEKSVVNVH 735 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY------ 843 L + ++ I F+H V G A S+G+QV +LAG+P VI A L E + Sbjct: 736 LDAVEHDDTIRFMHSVQNGAASKSFGLQVAQLAGVPKPVIKAAQQKLAILENAHLISETE 795 Query: 844 ----------------HHNQKDMRLYYPEIQTK----ESKNNLSKNDK--LFVEKIKCLN 881 Q D R T +S++ L DK VE ++ L+ Sbjct: 796 SSADVKTDKSSNIGDETGKQHDRRANKKAASTAHGSLQSQSQLLFPDKPHPVVEALENLS 855 Query: 882 LDEMSPLTALKTLYAVK 898 DE+SP AL +Y +K Sbjct: 856 PDELSPRQALDLIYTLK 872 >gi|224824756|ref|ZP_03697863.1| DNA mismatch repair protein MutS [Lutiella nitroferrum 2002] gi|224603249|gb|EEG09425.1| DNA mismatch repair protein MutS [Lutiella nitroferrum 2002] Length = 848 Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust. Identities = 315/875 (36%), Positives = 471/875 (53%), Gaps = 39/875 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ IK + D LVFYRMGDFYELFF+DA A+R L ITLT RG G I M G Sbjct: 7 TPMMQQYLAIKREHQDKLVFYRMGDFYELFFEDAEKAARLLDITLTTRGATAGIPIKMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ +L+K+G +AI EQI P AK V R VVR+VTPGTLT+ LL Sbjct: 67 VPYHAAEGYLARLVKLGESVAIAEQIGDPALAK-----GPVERKVVRIVTPGTLTDSALL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 N ++A+ +R + +AW+ +++G FK+ ++ D L S++ R+ P E++ ++ Sbjct: 122 DDKRDNLVLALNSVRGKLGLAWLSLASGEFKVMETSVDELASELERLKPAELLLPDES-- 179 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAAAAAI 264 L E L P FD + ++ + FG+ V AA A + Sbjct: 180 ---QVGLLEQLSIPKKKLPTWQFDQQSGLETLIRHFGTRDLAGFGAEELTVAIGAAGALL 236 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 Y+K TQ VN I ED + +D+A R NLE+ T+ G +L +D T Sbjct: 237 GYVKATQGVNPAHIASLAVEDESDLIRMDAATRRNLELTETIRGEPSPTLGSLLDCCATS 296 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 G R A + PL KI RL ++ + + + L D+ R +R+ + Sbjct: 297 MGSRQLAHWLHHPLRRHGKIRERLGAVRALLARH---GEVAEQLAEVADIERITARVALR 353 Query: 385 RGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLP 444 P+D+A +RD +++ + L + D P + AV L + L+S + + Sbjct: 354 SARPRDLAALRDSLKALTGVKGLAEQLDSPLLRQLAV--LLPADSPVATLLASAILPEPA 411 Query: 445 TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIE 504 TF RDGG + G A+LDE R+++ + L+ + E T I +LK++ N G++IE Sbjct: 412 TFLRDGGVINHGFSANLDELRAIQTNCGEFLLQLEAREKERTGIPSLKVEFNRVHGFYIE 471 Query: 505 VTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEI 564 V+ + + D + RQT+ N R+ T EL + E++ +A + AL +E + +E Sbjct: 472 VSKAQGDKVPDD------YRRRQTLKNAERYITPELKEFEDKALSANDRALALEKQLYET 525 Query: 565 LSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEK 624 L + + L +Q +A +D+ A A A+ +NY P + + +GRHP+VE Sbjct: 526 LLDELAPHIAELQLIAQAVATLDVLAAFARHAETRNYVEPEFVDEVRLEIIEGRHPVVEA 585 Query: 625 TLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684 +++ FIAND SC +D S KL L+TGPNMGGKST++RQ ALI ++A +GS+VP Sbjct: 586 EVER-----FIAND---SCLSD--SRKLLLITGPNMGGKSTYMRQTALITLLAHVGSFVP 635 Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744 A A +G +D++F+R+G++D+LA GRSTFMVEM ETA+ILN A+++S V++DE+GRGT+T Sbjct: 636 ADSAVLGPIDRIFTRIGASDDLAGGRSTFMVEMTETANILNNASDKSLVLMDEVGRGTST 695 Query: 745 LDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHK 804 DGL++AWA + L E NR L ATH+ ELT L+ N L + + I+FLH Sbjct: 696 FDGLALAWAIAKALIEKNRAYTLFATHYFELTRLASDYPGVANVHLSAIEHKDKIVFLHH 755 Query: 805 VIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI-QTKESK 863 V G A SYG+ V +LAG+P VI A L E Q+ P++ Sbjct: 756 VEDGPASQSYGLAVAQLAGVPGKVIREARRRLSELENQSAAAQQ------PDLFAAPLPA 809 Query: 864 NNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +E++ L DE++P AL LYA+K Sbjct: 810 AAAEPEPHPALERLAELQPDELTPRQALDLLYALK 844 >gi|15598816|ref|NP_252310.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa PAO1] gi|254236535|ref|ZP_04929858.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa C3719] gi|37999787|sp|Q9HY08|MUTS_PSEAE RecName: Full=DNA mismatch repair protein mutS gi|9949778|gb|AAG07008.1|AE004782_6 DNA mismatch repair protein MutS [Pseudomonas aeruginosa PAO1] gi|126168466|gb|EAZ53977.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa C3719] gi|318054274|gb|ADV35581.1| DNA mismatch repair protein [Pseudomonas aeruginosa] gi|318054278|gb|ADV35583.1| DNA mismatch repair protein [Pseudomonas aeruginosa] gi|318054280|gb|ADV35584.1| DNA mismatch repair protein [Pseudomonas aeruginosa] gi|318054282|gb|ADV35585.1| DNA mismatch repair protein [Pseudomonas aeruginosa] gi|318054284|gb|ADV35586.1| DNA mismatch repair protein [Pseudomonas aeruginosa] Length = 855 Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust. Identities = 315/890 (35%), Positives = 489/890 (54%), Gaps = 52/890 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L TPMM+QY ++K +PD L+FYRMGDFYELF++DA A++ L ITLT RG+ GK Sbjct: 3 DLSQHTPMMQQYFKLKHQHPDQLMFYRMGDFYELFYEDAKKAAKLLDITLTARGQSGGKA 62 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM G+P H+A Y+ KL+K+G +AICEQI P +K V R VVR++TPGT++ Sbjct: 63 IPMAGIPFHSAEGYLAKLVKLGESVAICEQIGDPAT-----SKGPVERQVVRIITPGTVS 117 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIF 199 ++ LL N L A+ + +A +DI++G F + + L++++ R++P E++ Sbjct: 118 DEALLDERRDNLLAAILGDERLFGLAVLDITSGRFSVQEIKGWETLLAELERLNPAELLI 177 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + ++ V + + FD + + + + FG + Sbjct: 178 PD------DWPQGLPAEKRRGVRRRAPWDFDRDSAHKSLCQQFGTQDLKGFGCQNLTLAI 231 Query: 259 AAAAA-ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA ++Y K+TQ P + + + T+ +D A+R NLE+ LSG RE +L Sbjct: 232 GAAGCLLAYAKETQRTALPHLRSLRHDRLDDTVILDGASRRNLELDINLSGGRENTLQSV 291 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D T RL + + PL D + R +SI ++ N +Q LK D+ R Sbjct: 292 VDRCQTAMASRLMSRWLNRPLRDRAVLEARQESIACLLERYRFEN-LQPQLKEIGDLERI 350 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 L+R+ + P+D+A +RD + + ++ N + + P L+ + P+ L + L+ Sbjct: 351 LARIGLRNARPRDLARLRDALAALPDLQNAMTELEAP-HLQALATTIGTYPE-LAELLAK 408 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + D+ P RDGG ++ G DA LDE ++L + + + + L+ + T + NLK+ +N Sbjct: 409 AIIDNPPAVIRDGGVIKTGYDAELDELQALSENAGQFLMDLEAREKARTGLPNLKVGYNR 468 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GYFIE+ A D +I RQT+ RF T EL E++ +A + AL Sbjct: 469 IHGYFIELPRVQAEQAPAD------YIRRQTLKGAERFITPELKAFEDKALSAQSRALAR 522 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E +E L +I L +++ +A +D+ LA A + RP T ++ G Sbjct: 523 EKALYEELLERLIGHLAPLQDSASALAELDVLANLAERALNLDLNRPRFVEHTCLHIEQG 582 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ L+ PF+AND L ++ ++TGPNMGGKST++RQ ALIV++A Sbjct: 583 RHPVVEQVLE----TPFVANDLALDA-----DTRMLVITGPNMGGKSTYMRQTALIVLLA 633 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V++DE Sbjct: 634 HIGSFVPAARCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDE 693 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 +GRGT+T DGLS+AWA E L T R L ATH+ ELT L +S N L ++ NE Sbjct: 694 VGRGTSTFDGLSLAWAAAEDLART-RAFTLFATHYFELTVLPESQPAVANVHLNATEHNE 752 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--KLYHHNQKDMRLYYP 855 I+FLH V+PG A SYG+ V +LAG+P VI RA + LK E L H P Sbjct: 753 RIVFLHHVLPGPASQSYGLAVAQLAGVPAPVIQRAREHLKRLETTSLPHE--------MP 804 Query: 856 EIQTKESKNNLSKNDKLF-------VEKIKCLNLDEMSPLTALKTLYAVK 898 Q+ + + + + LF ++++ +N D++SP AL LYA K Sbjct: 805 SQQSGKPASPMQSD--LFASLPHPVIDELSRINPDDISPRQALDLLYAWK 852 >gi|307246524|ref|ZP_07528596.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255510|ref|ZP_07537316.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259961|ref|ZP_07541674.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852587|gb|EFM84820.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306861552|gb|EFM93540.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865989|gb|EFM97864.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 864 Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust. Identities = 314/891 (35%), Positives = 490/891 (54%), Gaps = 41/891 (4%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 + ++L TPMM QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG Sbjct: 1 MTQDLSKHTPMMAQYLQLKAQNPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGASA 60 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G+ IPM GVP H Y+ KL+ +G +AICEQI P +K V R VVR+VTPG Sbjct: 61 GEPIPMAGVPYHAVEGYLAKLVSLGESVAICEQIGDPAT-----SKGPVERKVVRIVTPG 115 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPRE 196 T++++ LL N + A+ + +AIA +D+++G F I+ N + L +++ R+ P E Sbjct: 116 TVSDEALLPERQDNLVAAIYEEKGVFAIATLDMTSGRFLITELPNKEALAAELQRLLPAE 175 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 I+++E + S AE + ++ L +P F+ + + + + ++ FG + V Sbjct: 176 ILYAE-DFSAAEILNNYKGLRR----RPVWEFELVTAINLLNRQFGTQSLAGFGVEKAVV 230 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA + Y ++TQ P I T+ +D+A R NLE+ + L+G E +L Sbjct: 231 ALCAAGCVLHYAQETQRTALPHINSIHLAQNSDTVLLDAATRRNLELTQNLAGGTENTLA 290 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D +T G RL I P+ D K+ R D I+ +Q I P+Q +L++ D+ Sbjct: 291 AVLDKCVTPMGSRLLKRWIHQPIRDLEKLKKRQDIIDT-LQKEQRIEPLQPLLQNVGDME 349 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN--DLPEELRGAVEKLKKLPQSLEK 433 R L+R+ + P+D+ +R + +I KN +L L V ++ + L Sbjct: 350 RILARVALRSARPRDLTRLRTALAQLPDIA----KNAKNLTASLDALVAQIGDFSE-LHA 404 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + + P RDGG + +G +A LDE R L + + + +L+++ E T I LKI Sbjct: 405 LLERAIIETPPQLIRDGGVIAEGYNAELDEWRELSAGATQYLENLEIREREATGIDTLKI 464 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GY+I+++ A ++ ++ RQT+ N R+ EL E+++ A + Sbjct: 465 GFNAVHGYYIQISQGQAH------KAPMHYVRRQTLKNAERYIIPELKTYEDKVLKAKGA 518 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 +L +E + ++ L + ++ + + A+ ++ +D+ LA A+ NY RP Sbjct: 519 SLALEKQLYDELFDLLMPRLGEMQLAAMALSELDVLTNLAERAESLNYVRPTFSLQRGVN 578 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +K GRHP+VE+ LK PFIAN L+ L ++TGPNMGGKST++RQ ALI Sbjct: 579 IKGGRHPVVEQVLK----DPFIANPVFLNAQR-----HLLVVTGPNMGGKSTYMRQIALI 629 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT S V Sbjct: 630 SLMAYIGSFVPADSAEIGALDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATENSLV 689 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA E+L + + L ATH+ ELT L LK N L Sbjct: 690 LIDEIGRGTSTYDGLSLAWACAEWLAKKTQSLTLFATHYFELTSLPSQLKGVANVHLDAR 749 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL------YHHNQ 847 + + I+F+H V G A SYG+ V LAG+P VI A L E++ H N Sbjct: 750 EHQDSIVFMHSVQEGAASKSYGLAVAALAGVPKQVIQLAKQRLAHLEEISLQTKEAHDNP 809 Query: 848 KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L+ ++Q L + + ++ DE++P AL+ LY +K Sbjct: 810 QGDLLFAADLQETPQIQPLVAQQSELEKALMSIDPDELTPRQALEALYRLK 860 >gi|307250881|ref|ZP_07532809.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857131|gb|EFM89259.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 864 Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust. Identities = 314/891 (35%), Positives = 491/891 (55%), Gaps = 41/891 (4%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 + ++L TPMM QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG Sbjct: 1 MTQDLSKHTPMMAQYLQLKAQNPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGASA 60 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G+ IPM GVP H Y+ KL+ +G +AICEQI P +K V R VVR+VTPG Sbjct: 61 GEPIPMAGVPYHAVEGYLAKLVSLGESVAICEQIGDPAT-----SKGPVERKVVRIVTPG 115 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPRE 196 T++++ LL N + A+ + +AIA +D+++G F I+ N + L +++ R+ P E Sbjct: 116 TVSDEALLPERQDNLVAAIYEEKGVFAIATLDMTSGRFLITELPNKEALAAELQRLLPAE 175 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 I+++E + S AE + ++ L +P F+ + + + + ++ FG + V Sbjct: 176 ILYAE-DFSAAEILNNYKGLRR----RPVWEFELVTAINLLNRQFGTQSLAGFGVEKAVV 230 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA + Y ++TQ P I T+ +D+A R NLE+ + L+G E +L Sbjct: 231 ALCAAGCVLHYAQETQRTALPHINSIHLAQNSDTILLDAATRRNLELTQNLAGGTENTLA 290 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D +T G RL I P+ D K+ R D I+ +Q I P+Q +L++ D+ Sbjct: 291 AVLDKCVTPMGSRLLKRWIHQPIRDLEKLKKRQDIIDT-LQKEQRIEPLQPLLQNVGDME 349 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN--DLPEELRGAVEKLKKLPQSLEK 433 R L+R+ + P+D+ +R + +I KN +L L V ++ + L Sbjct: 350 RILARVALRSARPRDLTRLRTALAQLPDIA----KNAKNLTASLDALVAQIGDFSE-LHA 404 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + + P RDGG + +G +A LDE R L + + + +L+++ E T I LKI Sbjct: 405 LLKRAIIETPPQLIRDGGVIAEGYNAELDEWRELSAGATQYLENLEIREREATGIDTLKI 464 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GY+I+++ A ++ ++ RQT+ N R+ EL E+++ A + Sbjct: 465 GFNAVHGYYIQISQGQAH------KAPMHYVRRQTLKNAERYIIPELKTYEDKVLKAKGA 518 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 +L +E + ++ L + ++ + + A+ ++ +D+ LA A+ NY RP Sbjct: 519 SLALEKQLYDELFDLLMPRLGEMQLAAMALSELDVLTNLAERAESLNYVRPTFSLQRGVN 578 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +K GRHP+VE+ LK PFIAN L+ L ++TGPNMGGKST++RQ ALI Sbjct: 579 IKGGRHPVVEQVLKD----PFIANPVFLNAQR-----HLLVVTGPNMGGKSTYMRQIALI 629 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT +S V Sbjct: 630 SLMAYIGSFVPADSAEIGALDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATEKSLV 689 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA E+L + + L ATH+ ELT L LK N L Sbjct: 690 LIDEIGRGTSTYDGLSLAWACAEWLAKKTQSLTLFATHYFELTSLPSQLKGVANVHLDAR 749 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL------YHHNQ 847 + + I+F+H V G A SYG+ V LAG+P VI A L E++ H N Sbjct: 750 EHQDSIVFMHSVQEGAASKSYGLAVAALAGVPKQVIQLAKQRLAHLEEISLQTKEAHDNP 809 Query: 848 KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L+ ++Q L + + ++ DE++P AL+ LY +K Sbjct: 810 QGDLLFAADLQETPQIQPLVAQQSELEKALISIDPDELTPRQALEALYRLK 860 >gi|288940834|ref|YP_003443074.1| DNA mismatch repair protein MutS [Allochromatium vinosum DSM 180] gi|288896206|gb|ADC62042.1| DNA mismatch repair protein MutS [Allochromatium vinosum DSM 180] Length = 888 Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust. Identities = 316/893 (35%), Positives = 483/893 (54%), Gaps = 45/893 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L TPMM+QY+ IKS P L+FYRMGDFYELF++DA A+R L ITLT+RG+ G+ Sbjct: 9 DLSRHTPMMQQYLRIKSEYPHRLLFYRMGDFYELFYEDAERAARLLDITLTRRGQSGGRP 68 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM GVP H Y+ KL++ G +AICEQ+ P + +K V R V R+VTPGTLT Sbjct: 69 IPMAGVPYHAVEGYLAKLVRQGVSVAICEQVGDPAQ-----SKGPVERKVTRIVTPGTLT 123 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIF 199 ++ LL N L+A+A + +A +++S+G F + +H+ L+S++ R+ P EI+ Sbjct: 124 DEALLEERRENLLVALAEGASGLGLAVLELSSGRFSVLEVGSHEALMSELERLRPAEILI 183 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKT 258 +E +E + L +P F+ E + + + + FG ++ Sbjct: 184 AEDSRLDSELR-----LERGVTRRPVWHFESDSGERALCEQFGTRDLGGFGCAGMRLAIG 238 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA + Y++ TQ P I E L +D+A R NLEI +L G E +L + Sbjct: 239 AAGCLLQYVRDTQFAALPHIRGLSTESRDEALILDAATRRNLEITESLGGHPEHTLAGVL 298 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINP-IQKILKSSPDVPRS 377 D ++T G RL + PL D I R +I I + P IQ +L D+ R Sbjct: 299 DQTVTAMGSRLLRRWLNRPLRDREAIRARHGAIRALIS--VGHGPSIQALLNGIGDLERI 356 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKTL 435 L+R+ +G P+D+AV+RD + ++ ++ P +LR +++ + P+ L+ L Sbjct: 357 LARVALGTARPRDLAVLRDSLAVLPDLRAELAESPDPLLAQLR---DEIGEHPEVLD-LL 412 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + + P RDGG + G DA LD R L + + + + L+ + T + NLK+ + Sbjct: 413 QRAILEQPPMLIRDGGVIARGYDAELDRLRDLSEHADQFLLDLETRERTRTGLANLKVGY 472 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+IE++ + A + D F+ RQT+ + R+ T EL E+++ ++ AL Sbjct: 473 NRVHGYYIELSRTQADQVPPD------FVRRQTLKGVERYITPELKRFEDQVLSSRERAL 526 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 E +E L + L A+ IA +D+ LA A+ N+ P + N ++ Sbjct: 527 AREKWLYEELLGQLGLSLGPLQLAAGAIAALDVLANLAERAQTLNWSCPELTNRAQIEIQ 586 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 DGRHP+VE+ L PF+AN L ++ ++TGPNMGGKST++RQNALIV+ Sbjct: 587 DGRHPVVERVL----DGPFVANGLRLD-----GKRRMLVITGPNMGGKSTYMRQNALIVL 637 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +A GS+VPA A IG +D++FSR+G++D+LA GRSTFMVEM ETA+ILN AT QS +++ Sbjct: 638 LAHAGSFVPARRAVIGPIDRIFSRIGASDDLAGGRSTFMVEMEETANILNNATAQSLILM 697 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AW+ L L ATH+ ELT L + N L + Sbjct: 698 DEIGRGTSTFDGLSLAWSCAVELATRIGAYSLFATHYFELTTLPEEYPGIANVHLDAVEH 757 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN----QKDMR 851 + I+F+H + G A+ SYG+ V LAG+P VI+RA + L+ E H + + + Sbjct: 758 GQSIVFMHALREGPANQSYGLAVAALAGVPPAVIARARERLRELEDGAHRHATREAQQLS 817 Query: 852 LYYPEIQTKESKNNLSKNDKLFVEKIKCLNL-----DEMSPLTALKTLYAVKA 899 L+ E +S SK VE C+ L D ++P AL+ +Y ++ Sbjct: 818 LFPVEPTPPKSTKIKSKPVAEPVEPPVCIALRDIDPDGLTPREALEAIYRLRG 870 >gi|117919574|ref|YP_868766.1| DNA mismatch repair protein MutS [Shewanella sp. ANA-3] gi|166232138|sp|A0KU91|MUTS_SHESA RecName: Full=DNA mismatch repair protein mutS gi|117611906|gb|ABK47360.1| DNA mismatch repair protein MutS [Shewanella sp. ANA-3] Length = 861 Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust. Identities = 317/886 (35%), Positives = 484/886 (54%), Gaps = 41/886 (4%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 ++L+ TPMMRQY+ +K+ + D L+FYRMGDFYELF+DDA AS LGI+LT RGK G Sbjct: 7 DDLEKHTPMMRQYLTMKAEHHDMLLFYRMGDFYELFYDDAKRASELLGISLTARGKSGGD 66 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H Y+ KL++IG +AICEQI P +K V R VVR+VTPGTL Sbjct: 67 PIPMAGIPYHAVEGYLAKLVQIGQSVAICEQIGDPATSK-----GPVERKVVRIVTPGTL 121 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREII 198 T++ LL N L AV + + + A +D+S+G F I+ + L +++ R +P EI+ Sbjct: 122 TDEALLQERQDNLLAAVYQGKVGFGYATLDVSSGRFVIAELETKESLEAELQRTNPVEIL 181 Query: 199 FSEK----ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFS 253 +SE EL H +K +P FD+ S + + + FG + + Sbjct: 182 YSEDFGAMELLH-HFKG--------KRRRPEWEFDYDTSIKLLLAQFGTKDLHGFGITDA 232 Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 ++ AA + Y+K TQ P I R + T+ +D+A R NLE+ + LSG R+ + Sbjct: 233 RLSLQAAGCLMQYVKDTQRTALPHINAITRFNQTDTIVLDAATRRNLELTQNLSGGRDNT 292 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D + T G R+ I PL D +I R ++N ++ + LK+ D Sbjct: 293 LAAVLDNTATAMGSRMLQRWIHQPLRDHAQIFARQTAVNELLET-TAHESLHDQLKALGD 351 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R ++RL + P+D A +R + + + P ++ + L + P+ ++ Sbjct: 352 IERIMARLALRTARPRDFARLRQALNLLPQLQQSLAQLSAPHTVKLG-QLLGEFPEE-QQ 409 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + D+ P RDGG +R+G +A LDE R L + + + L+ + E T I LK+ Sbjct: 410 LLERAIVDNPPMLIRDGGVIREGYNAELDEWRGLSEGATDYLVQLEAREKERTGIATLKV 469 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GY+IEV+ + + + + RQT+ N+ R+ T EL + E ++ ++ Sbjct: 470 GYNRVHGYYIEVSRLQSQQVPLN------YQRRQTLKNMERYITPELKEYEEKVLSSQGK 523 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E + ++ L + I+ + L ++ A +D+ A A+ Y P + + Sbjct: 524 ALALEKQLWDELFDLILPKLHELQAFARAAAELDVLSNFAERAETLGYTCPELSSEIGVK 583 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 ++ GRHP+VE+ S PFIAN L N ++ ++TGPNMGGKST++RQ ALI Sbjct: 584 IEAGRHPVVERV----SQTPFIANPVTL-----HNQRRMLIVTGPNMGGKSTYMRQVALI 634 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +G +VPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT QS V Sbjct: 635 TLMAHIGCFVPADRAIIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATAQSLV 694 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AW+ EYL + L ATH+ ELT L + + +N L Sbjct: 695 LMDEIGRGTSTYDGLSLAWSAAEYLAQQVGAMTLFATHYFELTQLPELMAGVYNVHLDAI 754 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ-KDMRL 852 + + I F+H V G A SYG+QV LAG+P VI A L E H + ++ Sbjct: 755 EHEDTIAFMHAVQEGAASKSYGLQVAALAGVPARVIKAAKHKLHQLESRDHQVEGANVNG 814 Query: 853 YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 IQT + +N V K+K +N D ++P AL LY +K Sbjct: 815 TRAPIQTLLALPEPVENPA--VSKLKDINPDNLTPKQALDLLYELK 858 >gi|257465144|ref|ZP_05629515.1| DNA mismatch repair protein MutS [Actinobacillus minor 202] gi|257450804|gb|EEV24847.1| DNA mismatch repair protein MutS [Actinobacillus minor 202] Length = 864 Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust. Identities = 312/890 (35%), Positives = 492/890 (55%), Gaps = 37/890 (4%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 + + L + TPMM+QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG Sbjct: 1 MTQELSNHTPMMQQYLQLKAQNPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGASA 60 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G+ IPM GVP H Y+ KL+ +G +AICEQ+ P +K V R VVR+VTPG Sbjct: 61 GEPIPMAGVPYHAVEGYLAKLVALGESVAICEQVGDPTT-----SKGPVERKVVRIVTPG 115 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPRE 196 T++++ LL N + A+ + +AIA +D+++G F IS N + L +++ R+ P E Sbjct: 116 TVSDEALLPERQDNLVAAIYEEKGTFAIATLDMTSGRFLISELPNKEALAAELQRVSPAE 175 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 I+++E + ++A+ + ++ L +P F+ + + + ++ FG + V Sbjct: 176 ILYAE-DFAYAQILNNYKGLRR----RPVWEFELVTAIQLLNRQFGTQSLAGFGVEKAVV 230 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA + Y ++TQ P I T+ +D+A R NLE+ + L+G E +L Sbjct: 231 ALCAAGCVLHYAQETQRTALPHINSIHLAQNHDTVLLDAATRRNLELTQNLAGGTENTLA 290 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D +T G RL I P+ K+ R ++I+ +N I P+Q +L++ D+ Sbjct: 291 AVLDKCVTPMGSRLLKRWIHQPIRQMKKLEERQETIDALQKNG-QIQPLQSLLQNVGDME 349 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R L+R+ + P+D+ +R + +IL L L + ++ + L L Sbjct: 350 RILARVALRSARPRDLTRLRSALGQIPDILQS--SQHLTASLDQLLHQIGDFSE-LHDLL 406 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + ++ P RDGG + G +A LDE R L D + + + +L+ + E T I LKI Sbjct: 407 ERAIIENPPQLIRDGGVIAAGYNAELDEWRDLADGATQYLENLEQRERETTGIDTLKIGF 466 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+I+++ A ++ ++ RQT+ N R+ EL E+++ A ++L Sbjct: 467 NAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKTYEDKVLKAKGASL 520 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E + +E L + ++ + L A+ ++ +D+ LA A+ Y +P +K Sbjct: 521 ALEKQLYEALFDFMMPRLGELQLAAMALSELDVLTNLAERAENLGYVKPTFSPQRIINIK 580 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ LK+ PFIAN L+ L ++TGPNMGGKST++RQ ALI + Sbjct: 581 GGRHPVVEQVLKE----PFIANPVYLNAQR-----HLLVVTGPNMGGKSTYMRQIALITL 631 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MA +GS+VPA A IGIVD++F+R+G++D+LASGRSTFMVEM E A+IL+QAT S V++ Sbjct: 632 MAYIGSFVPAESAEIGIVDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATEYSLVLI 691 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA E+L + ++ L ATH+ ELT L LK N L + Sbjct: 692 DEIGRGTSTYDGLSLAWACAEWLAKKSQSLTLFATHYFELTSLPNLLKGVANVHLDAREH 751 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE------KLYHHNQKD 849 N+ I+F+H V G A SYG+ V LAG+P VI A L E K+ N + Sbjct: 752 NDTIVFMHSVQEGAASKSYGLAVAALAGVPKAVIQLAKQRLAHLETISEQTKVGAENPQA 811 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 L+ ++Q L + + + ++ DE++P AL+ LY +K Sbjct: 812 DLLFSGDLQNSTEIPPLVAVESEVEKALAEVDPDELTPKQALEVLYRLKG 861 >gi|320538978|ref|ZP_08038653.1| methyl-directed mismatch repair protein [Serratia symbiotica str. Tucson] gi|320030911|gb|EFW12915.1| methyl-directed mismatch repair protein [Serratia symbiotica str. Tucson] Length = 853 Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust. Identities = 314/885 (35%), Positives = 481/885 (54%), Gaps = 47/885 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +NL S TPMM+QY+ +K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 7 KNLDSHTPMMQQYLRLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 66 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H +Y+ +L+++G +AICEQI P +K + R VVR+VTPGT+ Sbjct: 67 PIPMAGVPHHAVENYLARLVQLGESVAICEQIGDPATSK-----GPIERKVVRIVTPGTI 121 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 T++ LL N L A+ + + A +D+S+G F+I+ + + + +++ R +P E++ Sbjct: 122 TDEALLQERQDNLLAAIWQDTRGFGYATLDVSSGRFRIAEPQDSETMAAELQRTNPAELL 181 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 + E + E +L E + Q ++ + +R T D G Q + Sbjct: 182 YPE----NFEQMALIEQRHGLRRRQ---LWEFELETARQQLNLQFGTRDLIGFGVEQAHR 234 Query: 258 T--AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA + Y+K TQ + P I E Q + +D+A R NLE+ + LSG E +L Sbjct: 235 ALRAAGCLLQYVKDTQRTSLPHIRGITMERQQDGIIMDAATRRNLELTQNLSGGSENTLA 294 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D+++T G R+ + P + +N R +I +Q+ L + +Q L+ D Sbjct: 295 AILDHTVTPMGSRMLKRWLHMPTRNINVLNDRQQAIGK-LQD--LYSDLQPSLRQVGDQE 351 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEK 433 R L+RL + P+D+A +R + +I L D P ++L V + L LE+ Sbjct: 352 RILARLALRTARPRDLARMRHAFQQLPDIRALLQNVDTPHAQQLLSQVGQFDALLDLLER 411 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + + P RDGG + G ++ LDE R L D + + L+++ E+ + LK+ Sbjct: 412 AIV----ESPPVLVRDGGVIAPGYNSELDEWRELADGASDYLDRLEIREREKLGLDTLKV 467 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GY+I+V+ + ++ ++ RQT+ N R+ EL + E+++ + Sbjct: 468 GFNGVHGYYIQVSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSKGK 521 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL IE ++ L + ++ L ++ +A +D+ LA A +Y P + Sbjct: 522 ALAIEKNLYDELFDLLLPHLAELQQSAAALAELDVLTNLAERADTLHYACPTMSEQPGLH 581 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + GRHP+VE+ L S+PFI N LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 582 ITKGRHPVVEQVL----SEPFIPNPLSLSPQR-----RMLIITGPNMGGKSTYMRQTALI 632 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 V+MA +GSYVPA+ AHIG VD++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V Sbjct: 633 VLMAHIGSYVPATKAHIGPVDRIFTRVGAADDLASGRSTFMVEMTETANILHNATKHSLV 692 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L Sbjct: 693 LMDEIGRGTSTYDGLSLAWACAENLANRIKAMTLFATHYFELTTLPEKMEGMVNVHLDAL 752 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 + + I F+H V G A SYG+ V LAG+P+ VI RA L+ E L HH Sbjct: 753 EHGDTIAFMHSVQDGAASKSYGLAVAALAGVPSDVIKRARQKLRELESLSHHTAAG---- 808 Query: 854 YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 L + V ++ LN D +SP AL+ LY +K Sbjct: 809 ---TVDATQMTLLDEETSPAVAALEALNPDSLSPRQALEWLYKLK 850 >gi|53729249|ref|ZP_00133779.2| COG0249: Mismatch repair ATPase (MutS family) [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126209066|ref|YP_001054291.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae L20] gi|189030435|sp|A3N2Q0|MUTS_ACTP2 RecName: Full=DNA mismatch repair protein mutS gi|126097858|gb|ABN74686.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 864 Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust. Identities = 314/891 (35%), Positives = 491/891 (55%), Gaps = 41/891 (4%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 + ++L TPMM QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG Sbjct: 1 MTQDLSKHTPMMAQYLQLKAQNPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGASA 60 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G+ IPM GVP H Y+ KL+ +G +AICEQI P +K V R VVR+VTPG Sbjct: 61 GEPIPMAGVPYHAVEGYLAKLVSLGESVAICEQIGDPAT-----SKGPVERKVVRIVTPG 115 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPRE 196 T++++ LL N + A+ + +AIA +D+++G F I+ N + L +++ R+ P E Sbjct: 116 TVSDEALLPERQDNLVAAIYEEKGVFAIATLDMTSGRFLITELPNKEALAAELQRLLPAE 175 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 I+++E + S AE + ++ L +P F+ + + + + ++ FG + V Sbjct: 176 ILYAE-DFSAAEILNNYKGLRR----RPVWEFELVTAINLLNRQFGTQSLAGFGVEKAVV 230 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA + Y ++TQ P I T+ +D+A R NLE+ + L+G E +L Sbjct: 231 ALCAAGCVLHYAQETQRTALPHINSIHLAQNSDTILLDAATRRNLELTQNLAGGTENTLA 290 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D +T G RL I P+ D K+ R D I+ +Q I P+Q +L++ D+ Sbjct: 291 AVLDKCVTPMGSRLLKRWIHQPIRDLEKLKKRQDIIDT-LQKEQRIEPLQPLLQNVGDME 349 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN--DLPEELRGAVEKLKKLPQSLEK 433 R L+R+ + P+D+ +R + +I KN +L L V ++ + L Sbjct: 350 RILARVALRSARPRDLTHLRTALAQLPDIA----KNAKNLTASLDALVAQIGDFSE-LHA 404 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + + P RDGG + +G +A LDE R L + + + +L+++ E T I LKI Sbjct: 405 LLKRAIIETPPQLIRDGGVIAEGYNAELDEWRELSAGATQYLENLEIREREATGIDTLKI 464 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GY+I+++ A ++ ++ RQT+ N R+ EL E+++ A + Sbjct: 465 GFNAVHGYYIQISQGQAH------KAPMHYVRRQTLKNAERYIIPELKTYEDKVLKAKGA 518 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 +L +E + ++ L + ++ + + A+ ++ +D+ LA A+ NY RP Sbjct: 519 SLALEKQLYDELFDLLMPRLGEMQLAAMALSELDVLTNLAERAESLNYVRPTFSLQRGVN 578 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +K GRHP+VE+ LK PFIAN L+ L ++TGPNMGGKST++RQ ALI Sbjct: 579 IKGGRHPVVEQVLKD----PFIANPVFLNAQR-----HLLVVTGPNMGGKSTYMRQIALI 629 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT +S V Sbjct: 630 SLMAYIGSFVPADSAEIGALDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATEKSLV 689 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA E+L + + L ATH+ ELT L LK N L Sbjct: 690 LIDEIGRGTSTYDGLSLAWACAEWLAKKTQSLTLFATHYFELTSLPSQLKGVANVHLDAR 749 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL------YHHNQ 847 + + I+F+H V G A SYG+ V LAG+P VI A L E++ H N Sbjct: 750 EHQDSIVFMHSVQEGAASKSYGLAVAALAGVPKQVIQLAKQRLAHLEEISLQTKEAHDNP 809 Query: 848 KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L+ ++Q L + + ++ DE++P AL+ LY +K Sbjct: 810 QGDLLFAADLQETPQIQPLVAQQSELEKALISIDPDELTPRQALEALYRLK 860 >gi|83589961|ref|YP_429970.1| DNA mismatch repair protein MutS [Moorella thermoacetica ATCC 39073] gi|123524598|sp|Q2RJG2|MUTS_MOOTA RecName: Full=DNA mismatch repair protein mutS gi|83572875|gb|ABC19427.1| DNA mismatch repair protein MutS [Moorella thermoacetica ATCC 39073] Length = 863 Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust. Identities = 307/876 (35%), Positives = 478/876 (54%), Gaps = 38/876 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI- 81 ++ TPMM QY +IKS PD ++F+R+GDFYE+F++DA +A+R L + LT RG GK+ Sbjct: 5 QALTPMMAQYRQIKSQYPDCILFFRLGDFYEMFYEDAEVAARELDLVLTTRG---GKEAA 61 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H A+ Y+ +L+ G+++AICEQ+E P +AK LVRR V+R+VTPGT+T+ Sbjct: 62 PMCGVPFHAADSYLARLVGKGYKVAICEQMEDPRQAK-----GLVRREVIRVVTPGTITD 116 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTS-NHDRLISDIMRIDPREIIFS 200 ++ L+P +NYL A+ R W +AW D STG F +T + + L+ +++R+ P E + Sbjct: 117 EKALTPGGNNYLAAIVRYNGCWGLAWADASTGEFLFTTCPDQETLVDELVRLMPSEYLLP 176 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 + K L + + V + + + D++ + AA Sbjct: 177 GELARDTALKRLLQIYTRGVITGWQVASNPEAARQSLEDHFGHEALAGV-ELPAAAGLAA 235 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT-LSGSREQSLLKTID 319 A +S++ TQ + + P S +F+D A R NLE++ RE SLL +D Sbjct: 236 AMILSFLVATQHNSLAHLEAPAAAATTSRMFLDQATRRNLELVTAGREQKREGSLLWVLD 295 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 ++T G R + PL D+ I R +++ ++ IL +++ L+ D+ R Sbjct: 296 KTLTAMGARTLRRWLDQPLVDAGAIKERQEAVAELVEGFILRQELRERLQVVRDLERLAG 355 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G +++ +R + IL L +++ L V L L L Sbjct: 356 RVAYGTAGGRELQALRGSLAVIPGILELM--SEVHSRLLAQVRAQLDPLDDLVDLLGRAL 413 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 DD P +GG +R G + +D+ R + IASL+ + E T IK+LK+ +N Sbjct: 414 VDDPPASITEGGIIRTGYNGEVDKLREAATHGRDWIASLEAEERERTGIKSLKVGYNRVF 473 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IEVT + + D E K QT++N RF T L +LE ++ A + +E Sbjct: 474 GYYIEVTRPNLPQVPADYERK------QTLANAERFVTRRLQELERQVLGAEERLVQLEY 527 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F+ L ++ + ++ + ++D I+LA +A + NY P +D+ T ++ GRH Sbjct: 528 ELFQGLREEVLGVLPRIQATARALGVLDALISLATVAVDNNYTCPRVDDGTVIEIEQGRH 587 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE S F+ ND L + ++TGPNM GKST++RQ ALIV++AQ+ Sbjct: 588 PVVELV---GSPGTFVPNDTYLD-----QEQYIQIITGPNMAGKSTYIRQVALIVLLAQI 639 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPA AHIG+VD++F+RVG+AD++ +G+STFMVEM E A IL AT +S VILDE+G Sbjct: 640 GSFVPARRAHIGLVDRIFTRVGAADDIFAGQSTFMVEMQEVAGILKHATRRSLVILDEVG 699 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGT+T DGLSIA A EY+H R L ATH+HEL L++ L N + V + E I Sbjct: 700 RGTSTADGLSIARAVTEYIHNVIGARCLFATHYHELVSLAEELSGVRNYCVAVLEEGEDI 759 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 FL ++PG D SYGI V +LAGLP V+ RA +IL+ + +R+ ++ Sbjct: 760 TFLRTIVPGSTDKSYGIHVARLAGLPEQVLERAREILE------QQPRAQVRVLTKPVK- 812 Query: 860 KESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 K L+ + +E++ NL +PL A++ ++ Sbjct: 813 ---KPTLTPGEVQVLEELAGYNLMAATPLEAMEQIF 845 >gi|94501246|ref|ZP_01307768.1| DNA mismatch repair protein MutS [Oceanobacter sp. RED65] gi|94426673|gb|EAT11659.1| DNA mismatch repair protein MutS [Oceanobacter sp. RED65] Length = 895 Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust. Identities = 306/824 (37%), Positives = 467/824 (56%), Gaps = 36/824 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ IK+ +P LVFYRMGDFYELF+DDA ++R L ITLT RGK G IPM G Sbjct: 18 TPMMQQYLRIKAEHPQQLVFYRMGDFYELFYDDAKKSARLLDITLTARGKSGGAPIPMAG 77 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H A YI KL+K+G +AI EQI P +K V R VVR++TPGTLT++ L Sbjct: 78 IPYHAAEGYIAKLVKMGESVAIAEQIGDPAT-----SKGPVERKVVRVITPGTLTDESFL 132 Query: 146 SPTDSNYLMAV-----ARIRTE-WAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREII 198 N L+AV R + + IA +DIS+G F + + + L ++ R+ P E++ Sbjct: 133 DERRDNLLVAVNSHIDGRTQKQTHGIATLDISSGRFSVMEVHSEEALHGELERLRPAELL 192 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 +SE + E + E G A + P F++ + + + + FG + Sbjct: 193 YSEDQQHSNE---IVERKG--AQSLPPWEFEYETGFRLLTEQFQTKDLHGFGCQHLKQAI 247 Query: 259 AAAAA-ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA + I Y K+TQ N P I E + +D+A R NLEI L+G + +L Sbjct: 248 GAAGSLIHYAKETQRTNLPHIRTLLLEQADDAIVMDAATRKNLEIDINLNGDTDFTLAWV 307 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D + T G RL + PL + + R +I I+ + I +LK D+ R Sbjct: 308 LDRTATAMGSRLLRRWLNRPLRQQSVLKERQHAIGAMIETHGYED-IHNVLKQIGDIERI 366 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 LSR+ + P+D+A +RD + + N D + +++ P+++E TL++ Sbjct: 367 LSRVALRSARPRDLARLRDALAVLPQLQNAISDVDAAP-IAALGQRISTYPETVE-TLTN 424 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + ++ P RDGG + +G D LDE R + + + + + ++ + E+T I LK+ +N Sbjct: 425 AVVENPPVVIRDGGVIAEGFDEELDELRGISENAGQFLIDIETREREKTGISTLKVGYNR 484 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IE++ + A E+ +I RQT+ N RF T EL + E++ ++ + AL Sbjct: 485 VHGYYIEISKAQAG------EAPTEYIRRQTLKNAERFITPELKEFEDKALSSKSRALSR 538 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E +E L ++ +Q +L + + I+ +D+ LA A Q Y RP + + ++ G Sbjct: 539 EKALYEELIESLADQLAALQDTAAAISELDVLSNLAERAVTQRYVRPELTENAGIDIQQG 598 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE ++ PF+AND D+N K+ ++TGPNMGGKST++RQ A I ++A Sbjct: 599 RHPVVEAVIE----DPFVANDVRF----DQNR-KMLVITGPNMGGKSTYMRQAAHIALLA 649 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GSYVPA A IG++D++F+R+GS+D++A GRSTFMVEM ETA+IL+ AT QS V++DE Sbjct: 650 HIGSYVPADSATIGLLDRIFTRMGSSDDVAGGRSTFMVEMTETANILHHATAQSLVLMDE 709 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 +GRGT+T DGLS+AWA+ EYL + + L ATH+ E+T L +S N L ++ N+ Sbjct: 710 VGRGTSTFDGLSLAWASAEYLSKHTQAYTLFATHYFEMTQLVESSDNVANVHLTATEHND 769 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 I+FLH V G A SYG+QV KLAG+P V+ +A L E+ Sbjct: 770 HIVFLHHVEEGPASQSYGLQVAKLAGVPLEVVEQAKQKLALLEE 813 >gi|253999524|ref|YP_003051587.1| DNA mismatch repair protein MutS [Methylovorus sp. SIP3-4] gi|253986203|gb|ACT51060.1| DNA mismatch repair protein MutS [Methylovorus sp. SIP3-4] Length = 859 Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust. Identities = 317/880 (36%), Positives = 479/880 (54%), Gaps = 39/880 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 ++ TPMMRQY+ IK+ PD L+FYRMGDFYELF DDA A+R LGITLTKRG G+ I Sbjct: 14 ENHTPMMRQYLGIKAQYPDMLLFYRMGDFYELFHDDAEKAARLLGITLTKRGASNGEPIR 73 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H A Y+ KL K+G +AICEQI P AK +G V R V R++TPGTLT+ Sbjct: 74 MAGVPYHAAEQYLAKLAKLGEAVAICEQIGDP--AKSKGP---VERQVTRILTPGTLTDS 128 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK 202 LL T N L+AV+ +A I+++ G ++ L ++ RI P E++ ++ Sbjct: 129 ALLDDTRDNLLVAVSAGEGIVGLARINLAAGQLVLTEVAPGLLAQELERISPAELLLADG 188 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 H ++L +A Q FD + + +N + FG + +AA Sbjct: 189 -YQHPSIEALKCPKKRLAPWQ----FDLDSATQLLTQQFNTHDLAGFGCADLTQAISAAG 243 Query: 263 AI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 A+ Y++ TQ + P I E + D+A+R NLEI +TL G +L ++ Sbjct: 244 ALLDYVRHTQRSSLPHINALSVEQSGEYIQFDAASRRNLEIDQTLRGEPAPTLYSLLNTC 303 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G RL + PL D I RL+++ +Q L P +++L + D+ R +R+ Sbjct: 304 RTAMGARLLRHWLHHPLRDHAAIQARLEAVAALLQGDALQAP-RRLLNNIGDIERITARV 362 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 + P+D++ +RD ++ + L L LP L L + P + L++ + Sbjct: 363 ALKSARPRDLSGLRDSLQQ-LPELQQSLAG-LPSALLQQAMALLQPPAEVTSLLAAAIRP 420 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + + R+GG + DG DA LDE R ++ + + + T + NLK+++N+ G+ Sbjct: 421 EPSSVLREGGVIADGYDAELDELRGIQTNCGEFLLKFEAEERARTGLANLKVEYNSVHGF 480 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IE++ + A + + RQT+ N RF T EL E+++ +A AL E Sbjct: 481 YIEISRAQAE------HAPAEYRRRQTLKNAERFITPELKTFEDKVLSANERALAREKAL 534 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 ++ L +A+ ++L + +A +D+ A A+ NY +P + GRHP+ Sbjct: 535 YDALLDALAPYIQALQANAHAVAQLDVIATFAERAQALNYVQPEFTAEAGIQITAGRHPV 594 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE Q ++PFIAND L+ +L L+TGPNMGGKST++RQ ALIV++A G Sbjct: 595 VE-----QLAQPFIANDVQLTPYR-----QLLLITGPNMGGKSTYMRQTALIVLLAHCGC 644 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA A IG VD++F+R+G++D+LA GRSTFMVEM ETA+IL+ AT S V+LDEIGRG Sbjct: 645 FVPAKAARIGQVDRIFTRIGASDDLAGGRSTFMVEMTETANILHNATEHSLVLLDEIGRG 704 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 T+T DGLS+AWA L E NR L ATH+ ELT L + K+ N L + GI+F Sbjct: 705 TSTFDGLSLAWAVARQLLERNRSYTLFATHYFELTRLVEDFKQAANVHLDAVEHGNGIVF 764 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK--LYHHNQKDMRLYYPEIQT 859 LH V G A SYG+QV +LAG+P +V++ A L E+ + Q DM + + Sbjct: 765 LHAVQEGPASQSYGLQVAQLAGIPRSVVNAAKRKLVQLEQQNIQAGPQSDM---FSQQAA 821 Query: 860 KESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 E +S + +++ L+ D+++P AL+ LY ++ Sbjct: 822 AEPHVEVSPA----LAELERLDPDDLTPKQALEALYRLRG 857 >gi|292491234|ref|YP_003526673.1| DNA mismatch repair protein MutS [Nitrosococcus halophilus Nc4] gi|291579829|gb|ADE14286.1| DNA mismatch repair protein MutS [Nitrosococcus halophilus Nc4] Length = 860 Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust. Identities = 317/884 (35%), Positives = 482/884 (54%), Gaps = 46/884 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TPMM+QY+ IK+ P +L+ YRMGDFYELF++DA A+ L I LT RG+ G IP Sbjct: 8 KPHTPMMQQYLRIKADYPHTLLLYRMGDFYELFYEDARRAAELLDIALTSRGQSAGAPIP 67 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M G+P H + Y+ KL++ G +AICEQI P AK +G + R VVR+VTPGT+T++ Sbjct: 68 MAGIPYHALDSYLVKLVRQGESVAICEQIGDP--AKSKGP---IERQVVRVVTPGTVTDE 122 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSE 201 LL N L A+ R + A +D+ +G F I N S++ RI P E++ SE Sbjct: 123 VLLEARQDNLLAALQRQGEVFGFAVLDLCSGRFSILEVDNEAAAASELARIRPAELLVSE 182 Query: 202 K-ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 + L+ A+ ++ VA P +FD ++ ++ + + FG + KTA Sbjct: 183 ELTLTLADPQA-----APVARPLPPWYFDTESAQRQLCQQFGTQDLAGFGC--EDLKTAI 235 Query: 261 AAA---ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AAA + Y+ TQ P I + E ++++ +D + R NLE+ +LSG +L+ Sbjct: 236 AAAGCLLQYLHDTQRTRLPHIQKLQVESQETSVILDPSTRRNLELEESLSGHSSHTLIAV 295 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D + T G RL + PL D T + R +I ++ L +QK+L+ D+ R Sbjct: 296 LDRTATAMGSRLLRRYLHRPLRDQTLLKQRQQAIATLLETG-LSAALQKLLRGIGDIERI 354 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 LSR+ + P+D+ +R + I D P+ L+ + L P+ L + L Sbjct: 355 LSRVALRSARPRDLVQLRQSLGLLPEIQAPLFPLDSPQ-LQLLRQDLGPFPE-LYQLLQR 412 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + ++ P ++GG + G D+ LDE R L D + + + L+ + E T + LK+ +N Sbjct: 413 AICENPPVLIQEGGVIAPGFDSKLDELRHLSDNAGQFLVELEQRERERTGLSTLKVGYNK 472 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IE+ + A D + RQT+ R+ T EL E+++ +A AL Sbjct: 473 IHGYYIEIPRTQAHKAPPD------YTRRQTLKGAERYITPELKGFEDKVLSARERALAR 526 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E +E L + +L + +A +D+ LA A+ Y P++ + ++ G Sbjct: 527 EKALYEELLEQLANPLPALQVCASALAELDVLNNLAERAETLEYVAPVLSDQPGIRIEGG 586 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+T++ PF+ ND L ++ ++TGPNMGGKST++RQ ALIV++A Sbjct: 587 RHPVVEQTME----APFVPNDLTL-----HEERQMLIITGPNMGGKSTYMRQTALIVLLA 637 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GS+VPA A IG +D++F+R+G+AD+LA GRSTFMVEM ETA+IL+ AT S V++DE Sbjct: 638 HIGSFVPARCAVIGPIDRMFTRIGAADDLAGGRSTFMVEMTETANILHNATEHSLVLMDE 697 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGT+T DGLS+AWA +L T L ATH+ ELT L + N L ++ E Sbjct: 698 IGRGTSTFDGLSLAWAVASHLACTVHSLTLFATHYFELTSLPEHFPGVANLHLTATEHKE 757 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 I+FLH V G A+ SYG+QV LAG+P VI++A L E H QK Sbjct: 758 RIVFLHAVKEGPANQSYGLQVAALAGVPQEVIAQAQQRLVELEN--HARQKPA------- 808 Query: 858 QTKESKNNL--SKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 E++ +L + D V+ ++ L+ DE+SP ALK LY +KA Sbjct: 809 DGGEAQLDLFATPADHPVVQILQDLDPDELSPRQALKKLYELKA 852 >gi|320323087|gb|EFW79176.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. glycinea str. B076] Length = 859 Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust. Identities = 314/887 (35%), Positives = 490/887 (55%), Gaps = 46/887 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L S TPMM+QY ++K+ + D L+FYRMGDFYE+F++DA A++ L ITLT RG+ G+ Sbjct: 7 DLSSHTPMMQQYWKLKNQHLDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQS 66 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCG+P H A Y+ KL+K+G + ICEQI P +K V R VVR++TPGT++ Sbjct: 67 IPMCGIPYHAAEGYLAKLVKLGESVVICEQIGDPATSK-----GPVDRQVVRIITPGTIS 121 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIF 199 ++ LL N + AV + +A +DI++G F + + L++++ RI+P E++ Sbjct: 122 DEALLDERRDNLIAAVLGDERLFGLAVLDITSGNFSVLEIKGWENLLAELERINPVELLI 181 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 + + L A + F+ + + ++ + FG + Sbjct: 182 PDDW-----PQGLPAEKRRGARRRAPWDFERDSAHKSLCQQFSTQDLKGFGCENLTLAIG 236 Query: 260 AAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA + SY K+TQ P + E + T+ +D+A+R NLE+ LSG R+ +L + Sbjct: 237 AAGCLLSYAKETQRTALPHLRSLRHERLDDTVILDAASRRNLELDTNLSGGRDNTLQSVM 296 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D T G RL + PL D T + R SI F++ N +Q LK D+ R L Sbjct: 297 DRCQTAMGTRLLTRWLNRPLRDLTILQARQTSITCFLERYRFEN-LQPQLKEIGDIERIL 355 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 +R+ + P+D+A +RD + S + L + + L+ + P+ L L Sbjct: 356 ARIGLRNARPRDLARLRDAL-SALPELQQAMTDLEAPHLQQLAQTASTYPE-LADLLQRA 413 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + D+ P RDGG L+ G DA LD+ +SL + + + + L+ + T + NLK+ +N Sbjct: 414 IIDNPPAVIRDGGVLKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLANLKVGYNRV 473 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GYFIE+ S A D +I RQT+ RF T EL + E++ +A + AL E Sbjct: 474 HGYFIELPSKQAEQAPAD------YIRRQTLKGAERFITPELKEFEDKALSAKSRALARE 527 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 +E L +I L + + +A +D+ LA A + P ++ GR Sbjct: 528 KMLYEALLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLDLNCPRFVAEPCMRIEQGR 587 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ L S PF+AND L +S ++ ++TGPNMGGKST++RQ ALIV++A Sbjct: 588 HPVVEQVL----STPFVANDLALD-----DSTRMLVITGPNMGGKSTYMRQTALIVLLAH 638 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V++DE+ Sbjct: 639 IGSFVPAASCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEV 698 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DG+S+AWA E L + R L ATH+ ELT L +S N L ++ NE Sbjct: 699 GRGTSTFDGISLAWAAAECLAQL-RAYTLFATHYFELTVLPESEPLVSNVHLNATEHNER 757 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 I+FLH+V+PG A SYG+ V +LAG+P VISRA + L+ E L + + + Sbjct: 758 IVFLHRVLPGPASQSYGLAVAQLAGVPGKVISRAKEHLQRLET--------TSLPHEQPR 809 Query: 859 TKESKNNLSKNDKLF-------VEKIKCLNLDEMSPLTALKTLYAVK 898 TK K + + +F ++++ + +D+M+P AL LY ++ Sbjct: 810 TKPGKPAVPQQSDMFASLPHPVLDELSKVKVDDMTPRQALDLLYTLQ 856 >gi|27597156|dbj|BAC55150.1| ORF23 [Methylobacillus sp. 12S] Length = 863 Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust. Identities = 316/880 (35%), Positives = 481/880 (54%), Gaps = 39/880 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 ++ TPMMRQY+ IK+ PD L+FYRMGDFYELF DDA A+R LGITLTKRG G+ I Sbjct: 14 ENHTPMMRQYLGIKAQYPDMLLFYRMGDFYELFHDDAEKAARLLGITLTKRGASNGEPIR 73 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H A Y+ KL K+G +AICEQI P AK +G V R V R++TPGTLT+ Sbjct: 74 MAGVPYHAAEQYLAKLAKLGEAVAICEQIGDP--AKSKGP---VERQVTRILTPGTLTDS 128 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK 202 LL T N L+A++ +A I+++ G ++ L ++ RI P E++ ++ Sbjct: 129 ALLDDTRDNLLVAISAGEGIVGLARINLAAGQLVLTEVAPGLLAQELERISPAELLLADG 188 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 H ++L +A Q FD + + +N + FG + +AA Sbjct: 189 -YQHPSIEALKCPKKRLAPWQ----FDLDSATQLLTQQFNTHDLAGFGCADLTQAISAAG 243 Query: 263 AI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 A+ Y++ TQ + P I E + D+A+R NLEI +TL G +L ++ Sbjct: 244 ALLDYVRHTQRSSLPHINALSVEQSGEYIQFDAASRRNLEIDQTLRGESAPTLYSLLNTC 303 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G RL + + PL D I RL+++ + L P +++L + D+ R +R+ Sbjct: 304 RTAMGARLLRQWLHHPLRDHAAIQARLEAVAALLHGDALQAP-RRLLNNIGDIERITARV 362 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 + P+D++ +RD ++ + L L LP L L + P + L++ + Sbjct: 363 ALKSARPRDLSGLRDSLQQ-LPELQQSLAG-LPSALLQQAMVLLQPPAEVTSLLAAAIRP 420 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + + R+GG + DG DA LDE R ++ + + + T + NLK+++N+ G+ Sbjct: 421 EPSSVLREGGVIADGYDAELDELRGIQTNCGEFLLKFEAEERARTGLANLKVEYNSVHGF 480 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IE++ + A + + RQT+ N RF T EL E+++ +A AL E Sbjct: 481 YIEISRAQAE------HAPAEYRRRQTLKNAERFITPELKTFEDKVLSANERALAREKAL 534 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 ++ L +A+ ++L + +A +D+ A A+ NY +P + GRHP+ Sbjct: 535 YDALLDALAPYIQALQANAHAVAQLDVIATFAERAQALNYVQPEFTAEAGIQITAGRHPV 594 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE Q ++PFIAND L+ +L L+TGPNMGGKST++RQ ALIV++A G Sbjct: 595 VE-----QLAQPFIANDVQLTPYR-----QLLLITGPNMGGKSTYMRQTALIVLLAHCGC 644 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA A IG VD++F+R+G++D+LA GRSTFMVEM ETA+IL+ AT S V+LDEIGRG Sbjct: 645 FVPAKAARIGQVDRIFTRIGASDDLAGGRSTFMVEMTETANILHNATEHSLVLLDEIGRG 704 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 T+T DGLS+AWA L E NR L ATH+ ELT L + K+ N L + GI+F Sbjct: 705 TSTFDGLSLAWAVARQLLERNRSYTLFATHYFELTRLVEDFKQAANVHLDAVEHGNGIVF 764 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK--LYHHNQKDMRLYYPEIQT 859 LH V G A SYG+QV +LAG+P +V++ A L E+ + Q DM + + Sbjct: 765 LHAVQEGPASQSYGLQVAQLAGIPRSVVNAAKRKLVQLEQQNIQAGPQSDM---FSQQAA 821 Query: 860 KESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 E + +S + +++ L+ D+++P AL+ LY ++A Sbjct: 822 AEPQVEVSPA----LAELERLDPDDLTPKQALEALYKLRA 857 >gi|313201553|ref|YP_004040211.1| DNA mismatch repair protein muts [Methylovorus sp. MP688] gi|312440869|gb|ADQ84975.1| DNA mismatch repair protein MutS [Methylovorus sp. MP688] Length = 859 Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust. Identities = 316/880 (35%), Positives = 478/880 (54%), Gaps = 39/880 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 ++ TPMMRQY+ IK+ PD L+FYRMGDFYELF DDA A+R LGITLTKRG G+ I Sbjct: 14 ENHTPMMRQYLGIKAQYPDMLLFYRMGDFYELFHDDAEKAARLLGITLTKRGASNGEPIR 73 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H A Y+ KL K+G +AICEQI P AK +G V R V R++TPGTLT+ Sbjct: 74 MAGVPYHAAEQYLAKLAKLGEAVAICEQIGDP--AKSKGP---VDRQVTRILTPGTLTDS 128 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK 202 LL T N L+AV+ +A I+++ G ++ L ++ RI P E++ ++ Sbjct: 129 ALLDDTRDNLLVAVSAGEGIVGLARINLAAGQLVLTEVAPGLLAQELERISPAELLLADG 188 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 H ++L +A Q FD + + +N + FG + +AA Sbjct: 189 -YQHPSIEALKCPKKRLAPWQ----FDLDSATQLLTQQFNTHDLAGFGCADLTQAISAAG 243 Query: 263 AI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 A+ Y++ TQ + P I E + D+A+R NLEI +TL G +L ++ Sbjct: 244 ALLDYVRHTQRSSLPHINALSVEQSGEYIQFDAASRRNLEIDQTLRGEPAPTLYSLLNTC 303 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G RL + PL D I RL+++ +Q L P +K+L + D+ R +R+ Sbjct: 304 RTAMGARLLRHWLHHPLRDHAAIQARLEAVAALLQGDALQAP-RKLLNNIGDIERITARV 362 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 + P+D++ +RD ++ + LP L L + P + L++ + Sbjct: 363 ALKSARPRDLSGLRDSLQQLPELQQSL--TSLPSALLQQAMALLQPPAEVTSLLAAAIRP 420 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + + R+GG + DG DA LDE R ++ + + + T + NLK+++N+ G+ Sbjct: 421 EPSSVLREGGVIADGYDAELDELRGIQTNCGEFLLKFEAEERARTGLANLKVEYNSVHGF 480 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IE++ + A + + RQT+ N RF T EL E+++ +A AL E Sbjct: 481 YIEISRAQAE------HAPAEYRRRQTLKNAERFITPELKTFEDKVLSANERALAREKAL 534 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 ++ L +A+ ++L + +A +D+ A+ NY +P + GRHP+ Sbjct: 535 YDALLDALAPYIQALQANAHAVAELDVIATFVERAQALNYVQPEFTAEAGIQITAGRHPV 594 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE Q ++PFIAND L+ +L L+TGPNMGGKST++RQ ALIV++A G Sbjct: 595 VE-----QLAQPFIANDVQLTPYR-----QLLLITGPNMGGKSTYMRQTALIVLLAHCGC 644 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA A IG VD++F+R+G++D+LA GRSTFMVEM ETA+IL+ AT S V+LDEIGRG Sbjct: 645 FVPAKAARIGQVDRIFTRIGASDDLAGGRSTFMVEMTETANILHNATEYSLVLLDEIGRG 704 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 T+T DGLS+AWA L E NR L ATH+ ELT L + K+ N L + GI+F Sbjct: 705 TSTFDGLSLAWAVARQLLERNRSYTLFATHYFELTRLVEDFKQAANVHLDAVEHGNGIVF 764 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK--LYHHNQKDMRLYYPEIQT 859 LH V G A SYG+QV +LAG+P +V++ A L E+ + Q DM + + Sbjct: 765 LHAVQEGPASQSYGLQVAQLAGIPRSVVNAAKRKLVQLEQQNIQAGPQGDM---FSQQAA 821 Query: 860 KESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 E + +S + +++ L+ D+++P AL+ LY ++A Sbjct: 822 AEPQVEVSPA----LAELERLDPDDLTPKQALEALYRLRA 857 >gi|45645389|gb|AAS73294.1| DNA mismatch repair protein [Haemophilus influenzae] Length = 861 Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust. Identities = 314/889 (35%), Positives = 495/889 (55%), Gaps = 44/889 (4%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 EEN + TPMM+QY+++K+ NPD LVFYRMGDFYELF+DDA A+ L I+LTKRG+ G Sbjct: 4 EENFQQHTPMMQQYLKLKAENPDILVFYRMGDFYELFYDDAKKAAALLDISLTKRGQSAG 63 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM G+P H Y+ KL+++G +AICEQI P +K V R +VR+VTPGT Sbjct: 64 QPIPMAGMPYHAVEGYLAKLVQLGESVAICEQIGDP-----STSKGPVERQIVRIVTPGT 118 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N + AV + + ++ +A +D+++G F++ ++ + L +++ RI P E+ Sbjct: 119 VSDEALLPERQDNLIAAVYQEKEKFGLATLDMTSGRFQLCEPADKETLRAELQRIAPVEL 178 Query: 198 IFSEK--ELSHAEY-KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 ++ E+ E++ E+ K L +P F+ S + + + + + FG Sbjct: 179 LYCEEFNEMAAIEHCKGLRR--------RPIWEFELSTAITLLNRQFGTKDLRAFG---- 226 Query: 255 VEKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS 309 VEK+ AA + Y K+TQ P I Q + +D+A R NLE+ + LSG Sbjct: 227 VEKSPLGLSAAGCLLQYAKETQRTALPHIQSISLIQNQDCIQLDAATRRNLELTQNLSGG 286 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 E +L +D +T G RL I P+ D K+ R +I + N L++ +Q L+ Sbjct: 287 TENTLASVLDKCVTPMGSRLLKRWIHQPIRDVEKLKQRQQAIAEIL-NFDLVDELQPYLQ 345 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 D+ R L+R+ + P+D+ +R + I L ++ L ++ + Sbjct: 346 LVGDMERILARVALRSARPRDLTRLRTALEQ-IPALRTIVQQKTSPFLTALFSQIADFSE 404 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 + L L + P RDGG + +G A LDE R L D + + + +L+ + E T I Sbjct: 405 QWD-LLQRALIETPPLLIRDGGVIAEGYHAELDEWRMLSDGATQYLENLEKRERESTGID 463 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LKI N GY+I+++ A ++ ++ RQT+ N R+ EL + E+++ Sbjct: 464 TLKIGFNAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKEYEDKVLK 517 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 + +AL +E + ++ L + ++ SL AS ++ +D+ + LA A NY P + Sbjct: 518 SKGAALALEKQLYDELFDLLLPHLGSLQLASLALSELDVLVNLAECADTLNYVMPTFCDE 577 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 + +++GRHP+VE+ LK PFIAN +++ ++ L ++TGPNMGGKST++RQ Sbjct: 578 VSVKIENGRHPVVEQVLK----DPFIANPVEVN-----HNRHLLIITGPNMGGKSTYMRQ 628 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI ++A +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT Sbjct: 629 TALITLLAYIGSFVPADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATA 688 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 QS V++DEIGRGT+T DGLS+AWA E+L + R L ATH+ ELT L + L+ N Sbjct: 689 QSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLEGIANIH 748 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 L + N I F+H V G A SYG+ V LAG+P +VI A L EK ++ + Sbjct: 749 LDALEHNNTIAFMHAVQDGAASKSYGLAVAALAGVPQSVIKLAKQKLTQLEKNSSYSAEQ 808 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E + + + E I+ L+ D++SP AL LY +K Sbjct: 809 QIQALREANHNQGELFFEQETDALREAIEKLDPDDLSPKQALAYLYQLK 857 >gi|77164436|ref|YP_342961.1| DNA mismatch repair protein [Nitrosococcus oceani ATCC 19707] gi|115299211|sp|Q3JCL5|MUTS_NITOC RecName: Full=DNA mismatch repair protein mutS gi|76882750|gb|ABA57431.1| DNA mismatch repair protein MutS [Nitrosococcus oceani ATCC 19707] Length = 863 Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust. Identities = 319/888 (35%), Positives = 486/888 (54%), Gaps = 53/888 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TPMM+QY+ IK+ P++L+ YRMGDFYELF+DDA AS L I LT RG+ G+ IP Sbjct: 8 KPHTPMMQQYLRIKAEYPNTLLLYRMGDFYELFYDDAQRASELLDIALTSRGRSAGEPIP 67 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M G+P H + Y+ +L++ G +AICEQI +P +K V R VVR++TPGT+TE+ Sbjct: 68 MAGIPYHALDSYLARLVRQGESVAICEQIGNP-----AASKGPVERQVVRIITPGTVTEE 122 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSE 201 LL N L A+ + + A +D+ +G F I ++ S++ RI P E++ SE Sbjct: 123 ALLEARRDNLLAALQKEGDVFGFAVLDLCSGRFNILEVASESAATSELARIRPAELLVSE 182 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 +L+ S E V P +FD ++ ++ + + FG + KTA A Sbjct: 183 -DLALILVDSKTEA---VVRPLPPWYFDRESAQRQLCRQFGTQDLAGFGC--EEMKTAIA 236 Query: 262 AA---ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKT 317 AA + Y++ TQ P I + E ++++ +D + R NLE+ +LSG S +L+ Sbjct: 237 AAGCLLHYVQDTQRTQFPHIHALQVERQETSIILDPSTRRNLELEESLSGDSGRNTLIAV 296 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D++ T G RL + PL D T + R ++ ++ L + +Q +L+ D+ R Sbjct: 297 LDHTATAMGSRLLRRYLHRPLRDQTLLKQRQQALATLLEGG-LSDVLQTLLRGIGDIERI 355 Query: 378 LSRLKIGRGEPKDIAVIRD--GIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 LSR+ + P+D+ R G+ I L L D L+ E L P +L + L Sbjct: 356 LSRVALRSARPRDLVQFRQALGLLPKIQESLLQLNRD-SLLLQSLQEDLGPFP-NLHELL 413 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + ++ P RDGG + G D+ LDE R L + + + L+ + E TKI LK+ + Sbjct: 414 QRAICENPPVLIRDGGVIALGFDSELDELRHLSGNAGQFLVKLEQRERERTKIPTLKVGY 473 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY++E+T + A D +I RQT+ R+ T EL E+++ +A AL Sbjct: 474 NKVHGYYLEITRAQAHQAPPD------YIRRQTLKGAERYITPELKGFEDQVLSARERAL 527 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 E +E L +E +L + +A +D+ LA AK Y P++ + ++ Sbjct: 528 AREKALYEELLEQFMEPLPALRACANALAELDVLHNLAERAKTLEYVAPLLSDQPGIFIE 587 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+TL+ PF+ ND L + ++ ++TGPNMGGKST++RQ ALIV+ Sbjct: 588 RGRHPVVEQTLE----DPFVPNDLTL-----HEARRMLIITGPNMGGKSTYMRQTALIVL 638 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +A +GS+VPA A IG +D++F+R+G+AD+LA GRSTFMVEM ETA+IL+ AT S V+L Sbjct: 639 LAHIGSFVPARRAVIGPIDRIFTRIGAADDLAGGRSTFMVEMTETANILHNATEHSLVLL 698 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGT+T DGLS+AWA + +L R L ATH+ ELT L + L N L ++ Sbjct: 699 DEVGRGTSTFDGLSLAWAVVSHLANKVRSLTLFATHYFELTTLPECLPGVVNLHLTATEH 758 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL-----KTFEKLYHHNQKDM 850 E I+FLH V G A SYG+QV LAG+P +I++A L T++K + + Sbjct: 759 KEHIVFLHAVKEGPASQSYGLQVAALAGVPQEIIAQARQQLMELENNTWQKSINGGGPQL 818 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 L P D V+ ++ L+ DE++P AL+ LY +K Sbjct: 819 DLLAP------------PADHPAVQILQDLDPDELTPRQALEKLYELK 854 >gi|313672389|ref|YP_004050500.1| DNA mismatch repair protein muts [Calditerrivibrio nitroreducens DSM 19672] gi|312939145|gb|ADR18337.1| DNA mismatch repair protein MutS [Calditerrivibrio nitroreducens DSM 19672] Length = 850 Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust. Identities = 315/893 (35%), Positives = 491/893 (54%), Gaps = 60/893 (6%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 +EEN+K TPM Q+++ K PD+++F+RMGDFYE+F +DA +AS+ L I LT R K+ Sbjct: 1 MEENIKI-TPMYSQFLQEKKNYPDAILFFRMGDFYEMFGEDAKIASKILNIALTARNKNE 59 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 IPMCG+P H+ Y++KL+ G+++AICEQ+E P AK +V+R VVR+VTPG Sbjct: 60 ENPIPMCGIPYHSYIPYLKKLVDAGYKVAICEQLEDPKNAK-----GIVKRGVVRVVTPG 114 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIM-RIDPRE 196 TL ED +L+ D N++++ R + D STG ++ S I DI+ + +P+E Sbjct: 115 TLIEDDILAGNDFNFILSFERDGDIFYAVVSDTSTGDTFVTKSVS---IEDIITQWNPKE 171 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVF---FDHSISESRIADYYNITTVDTFGSFS 253 II T+ N V + ++ R+A+YY IT+ G Sbjct: 172 II---------------TTINNPPVGNATILRYRYNDEYMLDRVAEYYGITSTVAIGIRE 216 Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 +V A I YI + K + +PE +TL++D+ A LE++ + S S Sbjct: 217 EVIVKALFNLIKYIDDNLLDVK--LKFPEFFTFDNTLYMDAVAIKTLEVVESSDPSGRTS 274 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +++ T G RL + +P +I R + I FF+ N LI+ + KIL D Sbjct: 275 LFDVLNFCKTAMGERLLKFYLLTPTRLKFEILRRQEWITFFVNNSDLIDSLSKILSEIND 334 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R ++R+ +G P+D+ +++ ++ I + LK + L+ ++ L + + + Sbjct: 335 IERIITRISAKKGSPRDLIGLKNSLKQLPQIKKI-LKGYVSPILQDFIKNFDDL-KDIYQ 392 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + +SDD P +D G ++DG +DE RS+R S+ ++ ++ + E+T I LK+ Sbjct: 393 LIDHAISDDPPLNIKDCGVIKDGYSTEVDELRSIRKNSQSLLLKIENEEKEKTGISTLKV 452 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 ++N GY+IE++ + D + RQT+ N RF T EL LE +I A Sbjct: 453 RYNKVFGYYIEISKGQVG------KVPDYYERRQTLVNAERFITPELKKLEEKILTAEER 506 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 +E E F + + + + + +Q++A ID I+ A A + NY RP + + Sbjct: 507 LQELEYEIFCQIRDGVSSNASRIRYVAQMVAEIDFFISSAYCAIKYNYVRPEVGDFEEIK 566 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + DGRHP++E+ +K+ F+ ND L D +L ++TGPNM GKST+LR A+I Sbjct: 567 IIDGRHPVIERRVKEG----FVPNDVLL----DGTKNRLMIITGPNMSGKSTYLRTVAVI 618 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA G +VPA A IG VD++F+RVG++DNLA G STFMVEM+ETA+I+ AT +S + Sbjct: 619 TLMAHCGLFVPAREAKIGFVDRIFTRVGASDNLARGESTFMVEMLETANIIKNATQKSLI 678 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ILDEIGRGT+T DGLSIAW+ EY+ E + + L ATH+HELT+L + N T V Sbjct: 679 ILDEIGRGTSTFDGLSIAWSVAEYIAERVKAKTLFATHYHELTELESMVAGVKNYTALVK 738 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 + IIF+ K+ G+AD SYGI V KLAGLP ++SRA ++L EK H D Sbjct: 739 EWKNEIIFMRKITEGVADKSYGIYVAKLAGLPEAIVSRAEEVLSILEK--HEISIDGSF- 795 Query: 854 YPEIQTKESKNN--------LSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + TK+ ++ L + + ++K +N DE+SP AL Y ++ Sbjct: 796 ---MMTKKKRSYERTVIQPMLLFEEHPIISELKGINPDELSPKEALDLFYRIR 845 >gi|91775187|ref|YP_544943.1| DNA mismatch repair protein MutS [Methylobacillus flagellatus KT] gi|91775331|ref|YP_545087.1| DNA mismatch repair protein MutS [Methylobacillus flagellatus KT] gi|123452014|sp|Q1H2P1|MUTS_METFK RecName: Full=DNA mismatch repair protein mutS gi|91709174|gb|ABE49102.1| DNA mismatch repair protein MutS [Methylobacillus flagellatus KT] gi|91709318|gb|ABE49246.1| DNA mismatch repair protein MutS [Methylobacillus flagellatus KT] gi|167042436|gb|ABZ07162.1| putative MutS domain V [uncultured marine microorganism HF4000_ANIW133B20] Length = 884 Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust. Identities = 318/898 (35%), Positives = 484/898 (53%), Gaps = 67/898 (7%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 L+ L+ TPMMRQY+ IK+ PD LVFYRMGDFYELF DDA ASR LGITLTKRG Sbjct: 34 LDNTLEQHTPMMRQYLGIKAQYPDMLVFYRMGDFYELFHDDAEKASRLLGITLTKRGSSN 93 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G+ I M GVP H A Y+ KL K+G +AICEQ+ P AK +G V R V R++TPG Sbjct: 94 GEPIRMAGVPYHAAEQYLAKLAKLGEAVAICEQVGDP--AKSKGP---VERQVTRILTPG 148 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREI 197 TLT+ LL T N L+A+A +A I++++G F +S L ++ RI P EI Sbjct: 149 TLTDAALLDDTRDNLLLAIAHGEGVLGLARINLASGRFILSEITPGLLAQELERISPAEI 208 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 ++ + + H + + +A Q FD S + ++ +D FG + Sbjct: 209 LYPD-DFYHMALEQVKCPKKRLAPWQ----FDLDSSIQTLTKQFSTYDLDGFGCAHMLAA 263 Query: 258 TAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 AA A+ Y+K TQ + P I E + +D+A R NLEI +TL G +L Sbjct: 264 IMAAGALLDYVKHTQRTSLPHIQSLMVEQGSQFIQLDAATRRNLEIDQTLRGESSPTLYS 323 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 ++ ++T G RL + PL I RL ++ + ++ +L++ D+ R Sbjct: 324 LLNTTVTAMGARLLRSWLHHPLQHQADIQARLQAVKVLQAQ---YDGLRPLLRNVGDIER 380 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEE--LRGAVEKLKKLPQSLEKT 434 +R+ + P+D++ +RD ++ + L L+ PE+ L ++++ +PQ+ Sbjct: 381 MAARVALKTARPRDLSGLRDSLQQ-LPALQRVLR---PEDSALLHSLQQQLDVPQAALDM 436 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L + + D+ R+GG + DG DA LDE R+++ + + + E + I NLK++ Sbjct: 437 LIAAIKDEPAAVLREGGVIADGFDAELDELRAIQSNCGEFLLQFEAQERERSGISNLKVE 496 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N+ G++IE++ + + + + + RQT+ N+ R+ T EL E+++ +A A Sbjct: 497 YNSVHGFYIEISRAQSENVPAE------YRRRQTLKNVERYITPELKTFEDKVLSANERA 550 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L E F+ L + + ++ +A +D+ A A Y P + + Sbjct: 551 LAREKFLFDELLGNLQPALAAWQRNAEAVAQLDVLATFAERADVLKYVAPQFSSEAGLDI 610 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 DGRHP+VE Q ++PFIAN LS +L L+TGPNMGGKST++RQ ALIV Sbjct: 611 VDGRHPVVE-----QLAQPFIANSVSLSPYR-----QLLLITGPNMGGKSTYMRQTALIV 660 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++A G +VPA A IG +D++F+R+G++D+LA GRSTFMVEM ETA+IL+ AT +S V+ Sbjct: 661 LLAHCGCFVPAKSARIGPIDRIFTRIGASDDLAGGRSTFMVEMTETANILHNATERSLVL 720 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDEIGRGT+T DGLS+AWA L E NR L ATH+ ELT +S+ K N L + Sbjct: 721 LDEIGRGTSTFDGLSLAWAVARQLLEKNRSYTLFATHYFELTRISEEFKHAANVHLDAVE 780 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 +GI+FLH V G A SYG+QV +LAG+P TV++ A L E Sbjct: 781 HGDGIVFLHNVEEGPASQSYGLQVAQLAGIPRTVVNAAKRKLVQLE-------------- 826 Query: 855 PEIQTKESKNNLSKNDKLF--------------VEKIKCLNLDEMSPLTALKTLYAVK 898 Q++ + +L+ +F V +++ ++ D ++P AL LY +K Sbjct: 827 ---QSQVMQQSLAGQGDMFVAANVEPEPATHPVVSELESIDPDSLTPRQALDVLYKLK 881 >gi|212218392|ref|YP_002305179.1| DNA mismatch repair protein MutS [Coxiella burnetii CbuK_Q154] gi|212012654|gb|ACJ20034.1| DNA mismatch repair protein [Coxiella burnetii CbuK_Q154] Length = 871 Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust. Identities = 316/894 (35%), Positives = 492/894 (55%), Gaps = 67/894 (7%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 + + TPMMRQY+ IK+ PD LVFYRMGDFYELF+DDA A++ L ITLT RG+ G Sbjct: 23 QNDFSQHTPMMRQYLRIKAEYPDLLVFYRMGDFYELFYDDAKKAAKLLNITLTARGQSAG 82 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 IPM GVP H +Y+ KL+++G + ICEQI P +K V R V R++TPGT Sbjct: 83 HAIPMAGVPYHAVENYLTKLVRLGESVVICEQIGDPATSK-----GPVAREVTRIITPGT 137 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N LM + + + + IA +DI++G F I + + L ++I RI P E+ Sbjct: 138 VSDEALLDEHRDNTLMVIHQEKDRFGIATLDITSGRFLIQEIISENALFAEIERIRPAEL 197 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVE 256 + SE+ S+ + +P FDH+ + + + + ++D FG + + Sbjct: 198 LISEE-------NSVHPLKADSIKRRPPWEFDHATALTLLCQQFQTKSLDGFGITHLPLA 250 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 TAA + Y+ TQ P I + E + LFID+ R NLE++ L G SL Sbjct: 251 ITAAGCLLQYVNYTQKSALPHIHSIQAEQNEEALFIDANTRRNLELITNLQGEEVHSLAW 310 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D++ T G RL I PL D + R ++++ ++ + I + L+ D+ R Sbjct: 311 LLDHTATPMGSRLLRRWINRPLRDQILLQQRQNAVSTLLEKRNY-SEIYENLRHIGDLER 369 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGI------NILNLFLKNDLPEELRGAVEKLKKLPQS 430 ++R+ + P+D+ +R + G+ + NL L L +E++ + +L + Sbjct: 370 IVARIALRSARPRDLMQLRQAL--GVLPTLHQQLTNLPLNKQL-QEIKNNLGLFDELFRL 426 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L+K + ++ P RDGG + DG DA LDE R++ S + + L+ + E TKI Sbjct: 427 LQKAII----ENPPIVIRDGGVIADGYDAPLDELRNMSTNSHQFLIDLEQQERERTKINT 482 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ +N GY+IE++ + A ++ +I RQT+ N+ R+ T EL E+++ ++ Sbjct: 483 LKVGYNRIHGYYIEISRAQAK------QAPTEYIRRQTLKNVERYITPELKIFEDKVLSS 536 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 + AL E E +E L + +IE+ L + IA +D+ LA A N+ P + Sbjct: 537 RSRALAREKELYEQLLDTLIEKLIPLQQCASAIANLDVLNTLAERADTLNFNAPQFCDYP 596 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 ++ GRHPIVE + + PF+ ND L ++ ++TGPNMGGKST++RQ Sbjct: 597 IIKIEAGRHPIVENVM----TDPFMPNDTHLD-----EKRRMLIITGPNMGGKSTYMRQT 647 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI ++A +GS+VPA A +G +D++F+R+G+AD+LASGRSTFMVEM ETA+IL+ AT + Sbjct: 648 ALITLLAYIGSFVPAKNAQLGPIDRIFTRIGAADDLASGRSTFMVEMTETAAILHNATEE 707 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V++DE+GRGT+T DGLS+A+A YL + L ATH+ ELT L+ +L N L Sbjct: 708 SLVLMDEVGRGTSTFDGLSLAYACASYLATKLKAFALFATHYFELTALASTLPAVKNVHL 767 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM 850 + E IIFLH + G A+ SYG+QV +LAG+P +VI A L+ FE Sbjct: 768 DAVEHEEKIIFLHALREGPANKSYGLQVAQLAGIPRSVIQHARQKLEEFEN--------- 818 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVE-------KIKCLNLDEMSPLTALKTLYAV 897 P I S+ + ++LF+ ++ LN D ++P AL LY + Sbjct: 819 ----PVI----SETQQPQQNELFLPIENPVLTQLDKLNPDNLTPKQALDILYQL 864 >gi|68249283|ref|YP_248395.1| DNA mismatch repair protein MutS [Haemophilus influenzae 86-028NP] gi|81336314|sp|Q4QML2|MUTS_HAEI8 RecName: Full=DNA mismatch repair protein mutS gi|68057482|gb|AAX87735.1| DNA mismatch repair protein MutS [Haemophilus influenzae 86-028NP] Length = 861 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 314/889 (35%), Positives = 495/889 (55%), Gaps = 44/889 (4%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 EEN + TPMM+QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG+ G Sbjct: 4 EENFQQHTPMMQQYLKLKAENPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGQSAG 63 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM G+P H Y+ KL+++G +AICEQI P +K V R +VR+VTPGT Sbjct: 64 QPIPMAGMPYHAVEGYLAKLVQLGESVAICEQIGDP-----STSKGPVERQIVRIVTPGT 118 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N + AV + + ++ +A +D+++G F++ ++ + L +++ RI P E+ Sbjct: 119 VSDEALLPERQDNLIAAVYQEKEKFGLATLDMTSGRFQLCEPADKETLRAELQRIVPVEL 178 Query: 198 IFSEK--ELSHAEY-KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 ++ E+ E++ E+ K L +P F+ S + + + + + FG Sbjct: 179 LYCEEFNEMAAIEHCKGLRR--------RPIWEFELSTAITLLNRQFGTKDLRAFG---- 226 Query: 255 VEKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS 309 VEK+ AA + Y K+TQ P I Q + +D+A R NLE+ + LSG Sbjct: 227 VEKSPLGLSAAGCLLQYAKETQRTALPHIQSISLIQNQDCIQLDAATRRNLELTQNLSGG 286 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 E +L +D +T G RL I P+ D K+ R +I + N L++ +Q L+ Sbjct: 287 TENTLASVLDKCVTPMGSRLLKRWIHQPIRDVEKLKQRQQAIAEIL-NFDLVDELQPYLQ 345 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 D+ R L+R+ + P+D+ +R + I L ++ L ++ + Sbjct: 346 LVGDMERILARVALRSARPRDLTRLRTALEQ-IPALRTIVQQKTSPFLTALFSQIADFSE 404 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 + L L + P RDGG + +G A LDE R L D + + + +L+ + E T I Sbjct: 405 QWD-LLQRALIETPPLLIRDGGVIAEGYHAELDEWRMLSDGATQYLENLEKRERESTGID 463 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LKI N GY+I+++ A ++ ++ RQT+ N R+ EL + E+++ Sbjct: 464 TLKIGFNAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKEYEDKVLK 517 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 + +AL +E + ++ L + ++ SL AS ++ +D+ + LA A NY P + Sbjct: 518 SKGAALALEKQLYDELFDLLLPHLGSLQLASLALSELDVLVNLAECADTLNYVMPTFCDE 577 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 + +++GRHP+VE+ LK PFIAN +L+ ++ L ++TGPNMGGKST++RQ Sbjct: 578 VSVKIENGRHPVVEQVLK----DPFIANPVELN-----HNRHLLIITGPNMGGKSTYMRQ 628 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI ++A +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT Sbjct: 629 TALITLLAYIGSFVPADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATE 688 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 QS V++DEIGRGT+T DGLS+AWA E+L + R L ATH+ ELT L + L+ N Sbjct: 689 QSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLEGIANIH 748 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 L + N I F+H V G A SYG+ V LAG+P +VI A L EK ++ + Sbjct: 749 LDALEHNNSIAFMHAVQDGAASKSYGLAVAALAGVPQSVIKLAKQKLTQLEKNSSYSAEQ 808 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E + + + E I+ L+ D++SP AL LY +K Sbjct: 809 QIQALREANHNQGELLFEQETDALREAIEKLDPDDLSPKQALAYLYQLK 857 >gi|318054276|gb|ADV35582.1| DNA mismatch repair protein [Pseudomonas aeruginosa] Length = 855 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 314/890 (35%), Positives = 488/890 (54%), Gaps = 52/890 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L TPMM+QY ++K +PD L+FYRMGDFYELF++DA A++ L ITLT RG+ GK Sbjct: 3 DLSQHTPMMQQYFKLKHQHPDQLMFYRMGDFYELFYEDAKKAAKLLDITLTARGQSGGKA 62 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM G+P H+A Y+ KL+K+G +AICEQI P +K V R VVR++TPGT++ Sbjct: 63 IPMAGIPFHSAEGYLAKLVKLGESVAICEQIGDPAT-----SKGPVERQVVRIITPGTVS 117 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIF 199 ++ LL N L A+ + +A +DI++G F + + L++++ R++P E++ Sbjct: 118 DEALLDERRDNLLAAILGDERLFGLAVLDITSGRFSVQEIKGWETLLAELERLNPAELLI 177 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + ++ V + + FD + + + + FG + Sbjct: 178 PD------DWPQGLPAEKRRGVRRRAPWDFDRDSAHKSLCQQFGTQDLKGFGCQNLTLAI 231 Query: 259 AAAAA-ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA ++Y K+TQ P + + + T+ +D A+R NLE+ L G RE +L Sbjct: 232 GAAGCLLAYAKETQRTALPHLRSLRHDRLDDTVILDGASRRNLELDINLGGGRENTLQSV 291 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D T RL + + PL D + R +SI ++ N +Q LK D+ R Sbjct: 292 VDRCQTAMASRLMSRWLNRPLRDRAVLEARQESIACLLERYRFEN-LQPQLKEIGDLERI 350 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 L+R+ + P+D+A +RD + + ++ N + + P L+ + P+ L + L+ Sbjct: 351 LARIGLRNARPRDLARLRDALAALPDLQNAMTELEAP-HLQALATTIGTYPE-LAELLAK 408 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + D+ P RDGG ++ G DA LDE ++L + + + + L+ + T + NLK+ +N Sbjct: 409 AIIDNPPAVIRDGGVIKTGYDAELDELQALSENAGQFLMDLEAREKARTGLPNLKVGYNR 468 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GYFIE+ A D +I RQT+ RF T EL E++ +A + AL Sbjct: 469 IHGYFIELPRVQAEQAPAD------YIRRQTLKGAERFITPELKAFEDKALSAQSRALAR 522 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E +E L +I L +++ +A +D+ LA A + RP T ++ G Sbjct: 523 EKALYEELLERLIGHLAPLQDSASALAELDVLANLAERALNLDLNRPRFVEHTCLHIEQG 582 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ L+ PF+AND L ++ ++TGPNMGGKST++RQ ALIV++A Sbjct: 583 RHPVVEQVLE----TPFVANDLALDA-----DTRMLVITGPNMGGKSTYMRQTALIVLLA 633 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V++DE Sbjct: 634 HIGSFVPAARCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDE 693 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 +GRGT+T DGLS+AWA E L T R L ATH+ ELT L +S N L ++ NE Sbjct: 694 VGRGTSTFDGLSLAWAAAEDLART-RAFTLFATHYFELTVLPESQPAVANVHLNATEHNE 752 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--KLYHHNQKDMRLYYP 855 I+FLH V+PG A SYG+ V +LAG+P VI RA + LK E L H P Sbjct: 753 RIVFLHHVLPGPASQSYGLAVAQLAGVPAPVIQRAREHLKRLETTSLPHE--------MP 804 Query: 856 EIQTKESKNNLSKNDKLF-------VEKIKCLNLDEMSPLTALKTLYAVK 898 Q+ + + + + LF ++++ +N D++SP AL LYA K Sbjct: 805 SQQSGKPASPMQSD--LFASLPHPVIDELSRINPDDISPRQALDLLYAWK 852 >gi|153206840|ref|ZP_01945681.1| DNA mismatch repair protein MutS [Coxiella burnetii 'MSU Goat Q177'] gi|165918512|ref|ZP_02218598.1| DNA mismatch repair protein MutS [Coxiella burnetii RSA 334] gi|120577203|gb|EAX33827.1| DNA mismatch repair protein MutS [Coxiella burnetii 'MSU Goat Q177'] gi|165917758|gb|EDR36362.1| DNA mismatch repair protein MutS [Coxiella burnetii RSA 334] Length = 859 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 316/894 (35%), Positives = 492/894 (55%), Gaps = 67/894 (7%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 + + TPMMRQY+ IK+ PD LVFYRMGDFYELF+DDA A++ L ITLT RG+ G Sbjct: 11 QNDFSQHTPMMRQYLRIKAEYPDLLVFYRMGDFYELFYDDAKKAAKLLNITLTARGQSAG 70 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 IPM GVP H +Y+ KL+++G + ICEQI P +K V R V R++TPGT Sbjct: 71 HAIPMAGVPYHAVENYLTKLVRLGESVVICEQIGDPATSK-----GPVAREVTRIITPGT 125 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N LM + + + + IA +DI++G F I + + L ++I RI P E+ Sbjct: 126 VSDEALLDEHRDNTLMVIHQEKDRFGIATLDITSGRFLIQEIISENALFAEIERIRPAEL 185 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVE 256 + SE+ S+ + +P FDH+ + + + + ++D FG + + Sbjct: 186 LISEE-------NSVHPLKADSIKRRPPWEFDHATALTLLCQQFQTKSLDGFGITHLPLA 238 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 TAA + Y+ TQ P I + E + LFID+ R NLE++ L G SL Sbjct: 239 ITAAGCLLQYVNYTQKSALPHIHSIQAEQNEEALFIDANTRRNLELITNLQGEEVHSLAW 298 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D++ T G RL I PL D + R ++++ ++ + I + L+ D+ R Sbjct: 299 LLDHTATPMGSRLLRRWINRPLRDQILLQQRQNAVSTLLEKRNY-SEIYENLRHIGDLER 357 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGI------NILNLFLKNDLPEELRGAVEKLKKLPQS 430 ++R+ + P+D+ +R + G+ + NL L L +E++ + +L + Sbjct: 358 IVARIALRSARPRDLMQLRQAL--GVLPTLHQQLTNLPLNKQL-QEIKNNLGLFDELFRL 414 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L+K + ++ P RDGG + DG DA LDE R++ S + + L+ + E TKI Sbjct: 415 LQKAII----ENPPIVIRDGGVIADGYDAPLDELRNMSTNSHQFLIDLEQQERERTKINT 470 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ +N GY+IE++ + A ++ +I RQT+ N+ R+ T EL E+++ ++ Sbjct: 471 LKVGYNRIHGYYIEISRAQAK------QAPTEYIRRQTLKNVERYITPELKIFEDKVLSS 524 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 + AL E E +E L + +IE+ L + IA +D+ LA A N+ P + Sbjct: 525 RSRALAREKELYEQLLDTLIEKLIPLQQCASAIANLDVLNTLAERADTLNFNAPQFCDYP 584 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 ++ GRHPIVE + + PF+ ND L ++ ++TGPNMGGKST++RQ Sbjct: 585 IIKIEAGRHPIVENVM----TDPFMPNDTHLD-----EKRRMLIITGPNMGGKSTYMRQT 635 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI ++A +GS+VPA A +G +D++F+R+G+AD+LASGRSTFMVEM ETA+IL+ AT + Sbjct: 636 ALITLLAYIGSFVPAKNAQLGPIDRIFTRIGAADDLASGRSTFMVEMTETAAILHNATEE 695 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V++DE+GRGT+T DGLS+A+A YL + L ATH+ ELT L+ +L N L Sbjct: 696 SLVLMDEVGRGTSTFDGLSLAYACASYLATKLKAFALFATHYFELTALASTLPAVKNVHL 755 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM 850 + E IIFLH + G A+ SYG+QV +LAG+P +VI A L+ FE Sbjct: 756 DAVEHEEKIIFLHALREGPANKSYGLQVAQLAGIPRSVIQHARQKLEEFEN--------- 806 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVE-------KIKCLNLDEMSPLTALKTLYAV 897 P I S+ + ++LF+ ++ LN D ++P AL LY + Sbjct: 807 ----PVI----SETQQPQQNELFLPIENPVLTQLDKLNPDNLTPKQALDILYQL 852 >gi|89894338|ref|YP_517825.1| hypothetical protein DSY1592 [Desulfitobacterium hafniense Y51] gi|122483100|sp|Q24X61|MUTS_DESHY RecName: Full=DNA mismatch repair protein mutS gi|89333786|dbj|BAE83381.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 862 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 315/884 (35%), Positives = 493/884 (55%), Gaps = 42/884 (4%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 +E+ +TPMM+QY IKS PD+++F+R+GDFYE+F +DA A+ L I LT R G Sbjct: 8 KESPTMTTPMMQQYKSIKSQAPDAILFFRLGDFYEMFGEDARTAAPILEIALTGRDSGGG 67 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPMCGVP H + Y+ KL+ G+++A+CEQ+E P AK +V+R ++R+++PGT Sbjct: 68 ERIPMCGVPHHAVDGYLLKLVSAGYKVALCEQVEDPQAAK-----GIVKREIIRIISPGT 122 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREI 197 LT+ L +N+L AV +W +A++D+STG F + T + D L +++ RI P E+ Sbjct: 123 LTDS--LVEQANNFLAAVYH-EQDWGLAFVDVSTGEFTVFQTESLDILTTELSRIRPSEL 179 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 + + L ++ + T + + H++ E R + + F F K Sbjct: 180 LLPAELLKAKHWRPYYLT------QREKKTYQHTLLEERFTEQREL-----FQEFPTAMK 228 Query: 258 TAAAAAISYIKKTQMVNKPT-IGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLL 315 AA YI +T P+ I + + +D R NLE+ ++ G ++ +LL Sbjct: 229 -AANGLWQYILETSPGIDPSHILKVNAYRPEHWMLLDPWTRRNLELTESIRGQGKKGTLL 287 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D++ T GGRL I PL +I RLD + +++ L + ++ D+ Sbjct: 288 SVLDFTKTAFGGRLLRRWIEQPLLLKGEIEKRLDYVEALVEDSFLRGDLIQLFGKVYDLE 347 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R + ++ G +D+ + + + L L E L+ + L+ L L TL Sbjct: 348 RLMGKVSYGTANARDLLSLAQTL-GVLPQLRALLAEGKSEPLQAFIPALEGL-DPLAATL 405 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 ++ + P +DG L+ G +DE RS+ K +A L+ + T I++LK+ + Sbjct: 406 EQAINPEAPISLKDGNLLKAGYSVEIDELRSISSGGKAWVAKLESMEKDRTGIRSLKVGY 465 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+IEVT +++ ++ + +I +QT++N RF T EL + E +I A Sbjct: 466 NKVFGYYIEVTHANSHLIPAE------YIRKQTLANAERFITPELKEYEQKILGAEEKVT 519 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E + F L + Q+ + A+ +A ID+ +LA A +Y RP++ + Sbjct: 520 QLEYQLFLELRETVRGQAAKILEAAHALAEIDVYTSLAEAAVRHHYSRPVMKGEGGLTII 579 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 +GRHP+VE L+ S F+ ND L+ DK+ L L+TGPNM GKST++RQ ALIV+ Sbjct: 580 EGRHPVVESMLQDTS---FVPNDTILT--EDKH---LALITGPNMAGKSTYMRQVALIVL 631 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+GS+VPA A I I D +F+RVG++D+LASG+STFMVEM E A IL T QS +IL Sbjct: 632 MAQIGSFVPAQQATIPIADHIFTRVGASDDLASGQSTFMVEMYEVAHILRHVTPQSLIIL 691 Query: 736 DEIGRGTATLDGLSIAWATIEYLH-ETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 DE+GRGTAT DGLSIAWA EYL + N+ + L ATH+HELTDL ++ N + V + Sbjct: 692 DEVGRGTATYDGLSIAWAVAEYLAGQENKPKTLFATHYHELTDLEETHSGIFNLHVGVRE 751 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 E I+FLHK+IPG AD SYGIQV KLAGLP ++ RA IL E ++++ L+ Sbjct: 752 HGEEIVFLHKIIPGRADRSYGIQVAKLAGLPANLLHRAKIILHELESSAKESRQE-HLFN 810 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E T+ S + D L ++++ L++++++P AL L+ +K Sbjct: 811 KEKATQLSLFEVQPLDPL-LQEVSELSVEDLTPRQALDYLFDLK 853 >gi|251793530|ref|YP_003008259.1| DNA mismatch repair protein MutS [Aggregatibacter aphrophilus NJ8700] gi|247534926|gb|ACS98172.1| DNA mismatch repair protein MutS [Aggregatibacter aphrophilus NJ8700] Length = 866 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 319/900 (35%), Positives = 490/900 (54%), Gaps = 62/900 (6%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 +EN + TPMM+QY+++K+ NPD L+FYRMGDFYELF+DDA AS L I+LTKRG+ G Sbjct: 4 KENFEQHTPMMKQYLQLKAENPDILLFYRMGDFYELFYDDAKRASALLDISLTKRGQSAG 63 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM GVP H Y+ KL+++G +AICEQI P AK V R +VR+VTPGT Sbjct: 64 QPIPMAGVPYHAVEGYLAKLVQLGESVAICEQIGDPNTAK-----GPVERQIVRIVTPGT 118 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREI 197 ++++ LL N + AV + + + +A +D+++G F++S L +++ RI P E+ Sbjct: 119 VSDEALLPERQDNLIAAVYQEKDHFGLATLDMTSGRFQLSEPQSKADLQTELQRIAPVEL 178 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 ++ E A+++ + G +P F+ + ++ +N + FG VEK Sbjct: 179 LYYE---DFADFQLIEHAKG--LRRRPIWEFELKTAIQQLCHQFNTKDLCGFG----VEK 229 Query: 258 T-----AAAAAISYIKKTQMVNKPTIG----YPEREDIQSTLFIDSAARSNLEILRTLSG 308 AA + Y ++TQ P I E+IQ +D+A R NLE+ + L+G Sbjct: 230 AILGLCAAGCLLQYARETQRTALPHIQSIHLIQHSENIQ----LDAATRRNLELTQNLAG 285 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKIL 368 E +L +D +T G RL I P+ D K+ R +I ++ L+ +Q L Sbjct: 286 GTENTLAAVLDKCVTPMGSRLLKRWIHQPICDVAKLTQRQQAIGAILEQD-LVADLQPYL 344 Query: 369 KSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP 428 + D+ R L+R+ + P+D+ +R + ++KN L E+ K+ L Sbjct: 345 QQVGDMERILARVALRTARPRDLTRLRTALEQ-----IPYIKNRLAEKTSA---KMTALY 396 Query: 429 QSLEK------TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 Q L L + D P RDGG + G +A LDE R L D + R + L+ + Sbjct: 397 QQLGDFSAQFDLLQRAIIDSPPVLIRDGGVIAAGYNAELDEWRELADGATRYLEDLEQRE 456 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T I LKI N GY+I+++ A ++ ++ RQT+ N R+ EL Sbjct: 457 RENTGIDTLKIGFNAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKT 510 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ A ++L +E + ++ + + ++ L A +A +D+ LA A+ NY Sbjct: 511 YEDKVLKAKGASLALEKQLYDEIFDQLLPHLGDLQLAGLALAELDVLTNLAERAESLNYV 570 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P T +++GRHP+VE+ LK+ PFIAN +L+ ++TGPNMGG Sbjct: 571 APTFSAQTGIHIQNGRHPVVEQVLKE----PFIANPTELT-----EQQHFLIITGPNMGG 621 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA MGS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+ Sbjct: 622 KSTYMRQTALITLMAYMGSFVPADSAVIGPIDRIFTRIGASDDLASGRSTFMVEMTEMAN 681 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+QAT++S V++DEIGRGT+T DGLS+AWA E+L + R L ATH+ ELT L + + Sbjct: 682 ILHQATDKSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKIRSLTLFATHYFELTVLPEQV 741 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + N+ I F+H V G A SYG+ V LAG+P VI A L EKL Sbjct: 742 QGIGNIHLDAIEHNDTIAFMHAVQKGAASKSYGLAVAALAGVPQQVIKLAKQKLAQLEKL 801 Query: 843 ----YHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + +++RL E + + + ++ L+ D++SP AL LY +K Sbjct: 802 SQQNANQQVQNLRLLNQRQGELEFATAEDEKKDMLLHMLQELDPDDLSPKQALAYLYQLK 861 >gi|145637590|ref|ZP_01793246.1| DNA mismatch repair protein [Haemophilus influenzae PittHH] gi|145269187|gb|EDK09134.1| DNA mismatch repair protein [Haemophilus influenzae PittHH] Length = 861 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 313/889 (35%), Positives = 494/889 (55%), Gaps = 44/889 (4%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 EEN + TPMM+QY+++K+ NPD+L+FYRMGDFYELF+DDA A+ L I+LTKRG+ G Sbjct: 4 EENFQQHTPMMQQYLKLKAENPDTLLFYRMGDFYELFYDDAKKAAALLDISLTKRGQSAG 63 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM G+P H Y+ KL+++G +AICEQI P +K V R +VR+VTPGT Sbjct: 64 QPIPMAGMPYHAVEGYLAKLVQLGESVAICEQIGDPATSK-----GPVERQIVRIVTPGT 118 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N + AV + + ++ +A +D+++G F++ ++ + L +++ RI P E+ Sbjct: 119 VSDEALLPERQDNLIAAVYQEKEKFGLATLDMTSGRFQLCEPADKETLRAELQRIVPVEL 178 Query: 198 IFSEK--ELSHAEY-KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 ++ E+ E++ E+ K L +P F+ S + + + + + FG Sbjct: 179 LYCEEFNEMAAIEHCKGLRR--------RPIWEFELSTAITLLNRQFGTKDLRAFG---- 226 Query: 255 VEKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS 309 VEK+ AA + Y K+TQ P I Q + +D+A R NLE+ + LSG Sbjct: 227 VEKSPLGLSAAGCLLQYAKETQRTALPHIQSISLIQNQDCIQLDAATRRNLELTQNLSGG 286 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 E +L +D +T G RL I P+ D K+ R +I + N L++ +Q L+ Sbjct: 287 TENTLASVLDKCVTPMGSRLLKRWIHQPIRDVEKLKQRQQAIAEIL-NFDLVDELQPYLQ 345 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 D+ R L+R+ + P+D+ +R + I L ++ L ++ + Sbjct: 346 LVGDMERILARVALRSARPRDLTRLRTALEQ-IPALRTIVQQKTSPFLTALFSQIADFSE 404 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 + L L + P RDGG + +G + LDE R L D + + + +L+ + E T I Sbjct: 405 QCD-LLQRALIETPPLLIRDGGVIAEGYNTELDEWRMLSDGATQYLENLEKRERENTGID 463 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LKI N GY+I+++ A ++ ++ RQT+ N R+ EL + E+++ Sbjct: 464 TLKIGFNAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKEYEDKVLK 517 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 + +AL +E + ++ L + ++ +L AS ++ +D+ + LA A NY P + Sbjct: 518 SKGAALALEKQLYDELFDLLLPHLGALQLASLALSELDVLVNLAERANTLNYVMPTFCDE 577 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 + +++GRHP+VE+ LK PFIAN +L+ ++ L ++TGPNMGGKST++RQ Sbjct: 578 VSVKIENGRHPVVEQVLK----DPFIANPVELN-----HNRHLLIITGPNMGGKSTYMRQ 628 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI ++A +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT Sbjct: 629 TALITLLAYIGSFVPADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATE 688 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 QS V++DEIGRGT+T DGLS+AWA E+L + R L ATH+ ELT L + L N Sbjct: 689 QSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLDGIANIH 748 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 L + N I F+H V G A SYG+ V LAG+P +VI A L EK H+ Sbjct: 749 LDALEHNNSIAFMHAVQDGAASKSYGLAVAALAGVPQSVIKLAKQKLTQLEKNSSHSADQ 808 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E + + + E I+ L+ D++SP AL LY +K Sbjct: 809 QIQALREANHNQGELLFEQETDALREAIEKLDPDDLSPKQALAYLYQLK 857 >gi|332289092|ref|YP_004419944.1| DNA mismatch repair protein MutS [Gallibacterium anatis UMN179] gi|330431988|gb|AEC17047.1| DNA mismatch repair protein MutS [Gallibacterium anatis UMN179] Length = 861 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 321/885 (36%), Positives = 487/885 (55%), Gaps = 31/885 (3%) Query: 16 IDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK 75 + LE NL S TPMM+QY++IK+ +PD L+FYRMGDFYELFFDDA AS+ L I+LTKRGK Sbjct: 1 MTLESNLSSFTPMMQQYLKIKAEHPDILLFYRMGDFYELFFDDAKRASQLLDISLTKRGK 60 Query: 76 HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVT 135 G IPM GVP H Y+ KL+++G +AICEQI P +K V R +VR+VT Sbjct: 61 TDGDPIPMAGVPYHAVEGYLAKLVQLGESVAICEQIGDP-----ATSKGPVERKIVRIVT 115 Query: 136 PGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDP 194 PGT++++ LL N + V + + +A +D+S+G F+IS ++ L +++ RI P Sbjct: 116 PGTISDEALLPERQDNLIACVYYEKKIFGLATLDMSSGRFQISELADEAALTTELQRIMP 175 Query: 195 REIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFS 253 EI++ E Y L E + +P F+ + + + + FG + Sbjct: 176 VEILYPED----FAYIRLLEPYKGLR-RRPTWEFELVTAIKLLTKQFGTQDLKGFGVDKA 230 Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 V AA + Y K+TQ P I + + ID A+R NLE+ + L+G E + Sbjct: 231 IVALCAAGCLLQYAKETQRTALPHINAISLSQERDFIVIDVASRRNLELTQNLAGGTENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +DY T G RL I PL + R +++ IQ + + +L+ D Sbjct: 291 LASVLDYCSTPMGSRLLKRWIHQPLRHKQTLLNRQNAVKNLIQQE-RYSDFKPLLQQIGD 349 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R L+R+ + P+D+ +R + I+ L +++ ++ + KL+ + L Sbjct: 350 MERILARIALRSARPRDLTRLRQALGQLPQIIQLLQQHNQHQQFDMLLSKLQDFSE-LFT 408 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L+ + + P RDGG + G LD+ R L + + + +L+++ ++T I LKI Sbjct: 409 LLTQAIIETPPLLIRDGGVIAPGYHQELDQWRELATGATQYLENLEIRERQQTGIDTLKI 468 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GY+I+++ A + +I RQT+ N RF EL D E+++ A + Sbjct: 469 GYNAVHGYYIQISRGQAE------RAPTHYIRRQTLKNAERFIIPELKDYEDKVLKAKGA 522 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E + ++ L + ++ +L S +A +D+ LA A+ NY P T Sbjct: 523 ALALEKQLYDELFDLLLPHLSALQTTSLALAELDVLANLAERAETLNYVAPTFSEQTLIS 582 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 ++ GRHP+VE L+ PFIAN DL N K L ++TGPNMGGKST++RQ ALI Sbjct: 583 IEAGRHPVVETVLQ----DPFIANPLDL---NQKR--HLLIITGPNMGGKSTYMRQTALI 633 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT QS V Sbjct: 634 TLMAYIGSFVPAQQAVIGPIDRIFTRIGASDDLASGRSTFMVEMSEMANILHQATPQSLV 693 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA E+L + L ATH+ ELT L + L N L Sbjct: 694 LIDEIGRGTSTYDGLSLAWACAEWLATQLKSLTLFATHYFELTALPQQLPGCINIHLDAK 753 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 + N+ I F+H V G A+ SYGI V +LAG+P VI A LK EKL N + + Y Sbjct: 754 EHNDTIAFMHSVQEGAANKSYGIAVAQLAGVPRAVIQLAKQKLKQLEKLSLQNSQ-INDY 812 Query: 854 YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E+ + N ++++ ++ D+++P AL LY +K Sbjct: 813 QTELDFN-PEPEFDANSAAILQQLAQIDPDDLTPKQALAMLYQLK 856 >gi|330959231|gb|EGH59491.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. maculicola str. ES4326] Length = 859 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 312/887 (35%), Positives = 489/887 (55%), Gaps = 46/887 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L S TPMM+QY ++K+ +PD L+FYRMGDFYE+F++DA A++ L ITLT RG+ G+ Sbjct: 7 DLSSHTPMMQQYWKLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQS 66 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCG+P H A Y+ KL+K+G + ICEQI P +K V R VVR++TPGT++ Sbjct: 67 IPMCGIPYHAAEGYLAKLVKLGESVVICEQIGDPAT-----SKGPVDRQVVRIITPGTIS 121 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIF 199 ++ LL N + AV + +A +DI++G F + + L++++ RI+P E++ Sbjct: 122 DEALLDERRDNLIAAVLGDERLFGLAVLDITSGNFSVLEIKGWENLLAELERINPVELLI 181 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 + + L A + F+ + + + + FG + Sbjct: 182 PDDW-----PQGLPAEKRRGARRRAPWDFERDSAHKSLCQQFATQDLKGFGCENLTLAIG 236 Query: 260 AAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA + SY ++TQ P + E + T+ +D+A+R NLE+ LSG R+ +L + Sbjct: 237 AAGCLLSYARETQRTALPHLRSLRHERLDDTVILDAASRRNLELDTNLSGGRDNTLQSVM 296 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D T G RL + PL D + R SI F++ N +Q LK D+ R L Sbjct: 297 DRCQTAMGTRLLTRWLNRPLRDLAVLQARQTSIGCFLERYRFEN-LQPQLKEIGDIERIL 355 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 +R+ + P+D+A +RD + + + D P L+ + P+ L L Sbjct: 356 ARIGLRNARPRDLARLRDALSALPALQQAMTDLDAPH-LQQLAQTASTYPE-LADLLQRA 413 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 ++D+ P RDGG L+ G DA LDE +SL + + + + L+ + T + +LK+ +N Sbjct: 414 INDNPPAVIRDGGVLKTGYDAELDELQSLSENAGQFLIDLEAREKARTGLSHLKVGYNRV 473 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GYFIE+ S A D +I RQT+ RF T EL + E++ +A + AL E Sbjct: 474 HGYFIELPSKQAEQAPAD------YIRRQTLKGAERFITPELKEFEDKALSAKSRALARE 527 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 +E L +I L + + +A +D+ LA A + P ++ GR Sbjct: 528 KMLYEALLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLDLNCPRFVAEPCMRIEQGR 587 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ L S PF+AND L D N+ ++ ++TGPNMGGKST++RQ ALIV++A Sbjct: 588 HPVVEQVL----STPFVANDLAL----DDNT-RMLVITGPNMGGKSTYMRQTALIVLLAH 638 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ A+++S V++DE+ Sbjct: 639 IGSFVPAATCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNASDKSLVLMDEV 698 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGLS+AWA E L + R L ATH+ ELT L +S N L ++ NE Sbjct: 699 GRGTSTFDGLSLAWAAAECLAQL-RAYTLFATHYFELTVLPESEPLVTNVHLNATEHNER 757 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 I+FLH+V+PG A SYG+ V +LAG+P VI+RA + L+ E L + + + Sbjct: 758 IVFLHRVLPGPASQSYGLAVAQLAGVPAKVITRAKEHLQRLET--------TSLPHEQPR 809 Query: 859 TKESKNNLSKNDKLF-------VEKIKCLNLDEMSPLTALKTLYAVK 898 K K + + +F ++++ + +D+M+P AL LY ++ Sbjct: 810 AKPGKPAVPQQSDMFASLPHPVLDELSKIKVDDMTPRQALDLLYTLQ 856 >gi|309973796|gb|ADO96997.1| DNA mismatch repair protein MutS [Haemophilus influenzae R2846] Length = 861 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 313/889 (35%), Positives = 495/889 (55%), Gaps = 44/889 (4%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 EEN + TPMM+QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG+ G Sbjct: 4 EENFQQHTPMMQQYLKLKAENPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGQSAG 63 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM G+P H Y+ KL+++G +AICEQI P +K V R +VR+VTPGT Sbjct: 64 QPIPMAGMPYHAVEGYLAKLVQLGESVAICEQIGDP-----TTSKGPVERQIVRIVTPGT 118 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N + AV + + ++ +A +D+++G F++ ++ + L +++ RI P E+ Sbjct: 119 VSDEALLPERQDNLIAAVYQEKEKFGLATLDMTSGRFQLCEPADKETLRAELQRIAPVEL 178 Query: 198 IFSEK--ELSHAEY-KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 ++ E+ E++ E+ K L +P F+ S + + + + + FG Sbjct: 179 LYCEEFNEMAAIEHCKGLRR--------RPIWEFELSTAITLLNRQFGTKDLRAFG---- 226 Query: 255 VEKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS 309 VEK+ AA + Y K+TQ P I Q + +D+A R NLE+ + L+G Sbjct: 227 VEKSPLGLSAAGCLLQYAKETQRTALPHIQSISLIQNQDCIQLDAATRRNLELTQNLAGG 286 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 E +L +D +T G RL I P+ D K+ R +I + N L++ +Q L+ Sbjct: 287 TENTLSSVLDKCVTPMGSRLLKRWIHQPIRDVEKLKQRQQAIAEIL-NFDLVDELQPYLQ 345 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 D+ R L+R+ + P+D+ +R + I L ++ P L ++ + Sbjct: 346 LVGDMERILARVALRSARPRDLTRLRTALEQ-IPALRAIVQQKTPPFLTALFSQIADFSE 404 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 + L L + P RDGG + +G + LDE R L D + + + +L+ + E T I Sbjct: 405 QCD-LLQRALIETPPLLIRDGGVIAEGYNTELDEWRMLSDGATQYLENLEKRERESTGID 463 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LKI N GY+I+++ A ++ ++ RQT+ N R+ EL + E+++ Sbjct: 464 TLKIGFNAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKEYEDKVLK 517 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 + +AL +E + ++ L + ++ +L AS ++ +D+ + LA A NY P + Sbjct: 518 SKGAALALEKQLYDELFDLLLPHLGALQLASLALSELDVLVNLAERADTLNYVMPTFCDE 577 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 + +++GRHP+VE+ LK PFIAN +L+ ++ L ++TGPNMGGKST++RQ Sbjct: 578 VSVKIENGRHPVVEQVLK----DPFIANPVELN-----HNRHLLVITGPNMGGKSTYMRQ 628 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI ++A +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT Sbjct: 629 TALITLLAYIGSFVPADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATV 688 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 QS V++DEIGRGT+T DGLS+AWA E+L + R L ATH+ ELT L + L+ N Sbjct: 689 QSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLEGIVNIH 748 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 L + N I F+H V G A SYG+ V LAG+P +VI A L EK H+ Sbjct: 749 LDALEHNNSIAFMHAVQDGAASKSYGLAVAALAGVPQSVIKLAKQKLTQLEKNSSHSADQ 808 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E + + + E I+ L+ D++SP AL LY +K Sbjct: 809 QIQALREANHNQGELLFEQETDALREAIEKLDPDDLSPKQALAYLYQLK 857 >gi|312884633|ref|ZP_07744336.1| DNA mismatch repair protein MutS [Vibrio caribbenthicus ATCC BAA-2122] gi|309367725|gb|EFP95274.1| DNA mismatch repair protein MutS [Vibrio caribbenthicus ATCC BAA-2122] Length = 858 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 310/889 (34%), Positives = 495/889 (55%), Gaps = 54/889 (6%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 + TPMM+QY+++K+ NPD L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IP Sbjct: 8 QKHTPMMQQYLKLKAENPDILLFYRMGDFYELFYDDAKRASQLLEISLTKRGSSAGEPIP 67 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+T++ Sbjct: 68 MAGVPFHAVEGYLAKLVQLGESVAICEQIGDPATSK-----GPVERQVVRIVTPGTITDE 122 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLIS-DIMRIDPREIIFSE 201 LL+ N + A+ + ++ A +D+++G F++ + +S ++ R PRE++F E Sbjct: 123 ALLTERVDNLIAAIYSHQGQFGYATLDMTSGRFQLMEPKTEEAMSAELQRTAPRELLFPE 182 Query: 202 KELSHAEYKSLFETLG-NVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTA 259 ++ + G N +P F+ ++ ++ + + FG +++ A Sbjct: 183 ------DFDAAHLMAGRNGNRRRPVWEFELETAKQQLNQQFGTKDLIGFGVEQAKLGLCA 236 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A I Y+K TQ P I + ++ +D+A R NLEI + L+G E +L + +D Sbjct: 237 AGCLIQYVKDTQRTALPHIRSLTYDRQDHSVILDAATRRNLEITQNLAGGNENTLAEVLD 296 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G R+ + P+ D ++ RLD+I+ ++ I ILK D+ R L+ Sbjct: 297 KTATPMGSRMLKRWLHQPMRDIRVLDQRLDAISE-LKELSSFGEIGPILKQIGDIERILA 355 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGA----VEKLKKLPQSLEKT- 434 RL + P+D+A +R ++ DL E + ++KL + Q ++ Sbjct: 356 RLALRSARPRDLARLRFALQQ---------LPDLSESMESMTNSYLKKLAEYAQPIDNVC 406 Query: 435 --LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 L + + ++ P RDGG +++G + LDE R L D + + L+ E I +LK Sbjct: 407 SLLENAIKENPPVVIRDGGVIQEGYNTELDEWRKLADGATEYLDKLEQDERERHGIDSLK 466 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 + +NN G+FI+V+ + ++ ++ RQT+ N R+ EL + E+++ N+ + Sbjct: 467 VGYNNVHGFFIQVSRGQSHLVPP------HYVRRQTLKNAERYIISELKEHEDKVLNSRS 520 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 AL +E + +E L + ++ E + N + I+ +D+ LA A +YCRP + T Sbjct: 521 KALALEKQLWEELFDLLLPHLEKMQNLASAISQLDVLQNLAERADTLDYCRPELATDTGI 580 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 ++ GRHP+VE+ L + PFIAN L+C K+ ++TGPNMGGKST++RQ AL Sbjct: 581 DIEAGRHPVVEQVLDE----PFIANPITLNCER-----KMLIITGPNMGGKSTYMRQTAL 631 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 I +MA +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S Sbjct: 632 IALMAHIGSFVPAQSATIGSIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKHSL 691 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 V++DEIGRGT+T DGLS+AWA+ E+L + L ATH+ ELT+L + N L Sbjct: 692 VLMDEIGRGTSTFDGLSLAWASAEWLAKEIGSMTLFATHYFELTELPNLVPGLSNIHLDA 751 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 + + I F+H V G A+ SYG+ V LAG+P VI A L E + ++ + Sbjct: 752 IEHGDSIAFMHAVQEGAANQSYGLAVAGLAGVPKNVIKNARRKLVQLENMSRNDSSN--- 808 Query: 853 YYPEIQTK-ESKNNLSKNDKL--FVEKIKCLNLDEMSPLTALKTLYAVK 898 PE +++ LS +L + + + DE++P AL LY +K Sbjct: 809 --PETSIGIDTEQQLSLIPELSEAEQALSAIEPDELTPRQALDALYRLK 855 >gi|229824836|ref|ZP_04450905.1| hypothetical protein GCWU000182_00185 [Abiotrophia defectiva ATCC 49176] gi|229790839|gb|EEP26953.1| hypothetical protein GCWU000182_00185 [Abiotrophia defectiva ATCC 49176] Length = 915 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 328/935 (35%), Positives = 508/935 (54%), Gaps = 82/935 (8%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 +E +++ TPMMRQY +IK D ++FYRMGDFYE+F+DDAL AS+ L ITLTKR Sbjct: 1 MEIDVEKLTPMMRQYYDIKKEYSDCILFYRMGDFYEMFYDDALTASKVLEITLTKRSNSN 60 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 PMCGVP H + Y+ L++ G+++AICEQ E P AK LV+R V+R+VTPG Sbjct: 61 ENSPPMCGVPFHAVDRYLNNLVQAGYKVAICEQTEDPKLAK-----GLVKREVIRIVTPG 115 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPRE 196 T + L T +N+LM + + ++ I+ +D+STG F ++ + L+ +I + +P E Sbjct: 116 TNLDTSALEETKNNFLMGIIAVNEDYGISLVDVSTGEFLVTELVSAKSLLDEITKFEPAE 175 Query: 197 IIFSEKEL-SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQV 255 ++ ++ + S E V ++++S + I ++ + +D G Sbjct: 176 LVCNDNLIISGVLTDDFIEKQHLVITRLEKRYYEYSAAVRMIKKHFKVEVLDGLGLTGMD 235 Query: 256 EKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQS 313 +A + +Y+ +TQ + I + + + +D + R NLE+ TL ++ S Sbjct: 236 NAICSAGMVLAYLYETQKNDLTHIISIKPYSNNAYMILDGSTRRNLELTETLRDKNKRGS 295 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T G RL + PL T I +RLD+I F +N I I++ L D Sbjct: 296 LLWVLDKTKTAMGARLLRNFLEQPLVVKTDIESRLDAIEDFNKNIITREEIREYLNPVYD 355 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFL---KNDLPE----ELRGAVEKLKK 426 + R L+++ P+D+ + I FL K+ LPE L E L Sbjct: 356 IERLLAKICYKSANPRDLLAFMNSIE--------FLPAIKSLLPEFSSKLLNDYNEMLDP 407 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 L EK +++ + P R+G +++G + +D R + K +++ L+ + E T Sbjct: 408 LSDIYEKIDRAIVPEP-PLSVREGRIIKEGYNEEIDRLRRANTEGKTLVSELENEEKERT 466 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 IKNL+IK+N GY+IEVT+S ++ D + +QT++N R+ T L + EN Sbjct: 467 GIKNLRIKYNKVFGYYIEVTNSYKDMVPDD------WTRKQTLTNAERYITPRLKEFENM 520 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 I A + +E + F L + I + + ++ IA ID I+L+ +A+ + + RP I Sbjct: 521 ILGAEERLVTLEYDLFSELRDEIAAEIVRISKTAKAIAGIDAFISLSAVAESEGFVRPKI 580 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 + +KDGRHP+VEK + FI ND L ND+ S ++TGPNM GKST+ Sbjct: 581 NEEGIVDIKDGRHPVVEKMM---GGDGFIVNDTYLDEKNDRIS----IITGPNMAGKSTY 633 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ A+IV+MAQ+GS+VPA A+IGI D++F+RVG++D+LASG+STFMVEM E A+IL Sbjct: 634 MRQTAIIVLMAQIGSFVPAGSANIGICDRIFTRVGASDDLASGQSTFMVEMTEVANILRN 693 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKR 784 AT S +ILDEIGRGT+T DGLSIAWA +EY+ + L ATH+HELT+L L Sbjct: 694 ATKNSLLILDEIGRGTSTFDGLSIAWAVVEYISNPRLLGAKTLFATHYHELTELEGKLPN 753 Query: 785 FHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAY---------DI 835 +N + V + + I+FL K++ G AD SYGIQV +LAG+P++VI RA DI Sbjct: 754 VNNYCIAVREDGDNIVFLRKIVKGGADKSYGIQVARLAGVPDSVIERAKELAIELDSNDI 813 Query: 836 LKTFEKL--------------YHHNQKDMRLY-----YPEIQ--------TKESKNNL-- 866 L+ +KL Y N+ + P+ + K +N + Sbjct: 814 LEKAKKLEVKSVADGSSGAREYVENKNVIEFLSETGGMPDKKEEKKLLKPNKTDENQISF 873 Query: 867 ---SKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 SKN+ + E + + L+E+SP+ AL LYA++ Sbjct: 874 FGSSKNEDVIAELMD-MKLEELSPIDALNKLYAMQ 907 >gi|261493851|ref|ZP_05990363.1| DNA mismatch repair protein MutS [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495117|ref|ZP_05991581.1| DNA mismatch repair protein MutS [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309187|gb|EEY10426.1| DNA mismatch repair protein MutS [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310453|gb|EEY11644.1| DNA mismatch repair protein MutS [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 865 Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust. Identities = 320/898 (35%), Positives = 500/898 (55%), Gaps = 54/898 (6%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 + ++ + TPMM+QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG+ Sbjct: 1 MTQDFSTHTPMMQQYLQLKAQNPDILLFYRMGDFYELFYDDAKRAAALLDISLTKRGQSA 60 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G+ IPM GVP H Y+ KL+ +G +AICEQI P +K V R VVR+VTPG Sbjct: 61 GEPIPMAGVPYHAVEGYLAKLVALGESVAICEQIGDPAT-----SKGPVERKVVRIVTPG 115 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPRE 196 T++++ LL N + AV + +AIA +D+++G F IS ++ + L +++ R+ P E Sbjct: 116 TVSDEALLPERQDNLVAAVYEEKGTFAIATLDMTSGRFLISELASKEALSAELQRVQPAE 175 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 I+++E + S A + ++ L +P F+ + + + T+ FG + V Sbjct: 176 ILYAE-DFSAASILTNYKGLRR----RPVWEFELVTAIQLLNRQFGTQTLAGFGVEKAVV 230 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA + Y ++TQ P I T+ +D+A R NLE+ + L+G E +L Sbjct: 231 ALCAAGCVLHYAQETQRTALPHINAIHLAQHSDTILLDAATRRNLELTQNLAGGTENTLA 290 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D +T G RL I P+ D K+ R +I IQ + + +Q +L+ D+ Sbjct: 291 AVLDKCVTPMGSRLLKRWIHQPIRDCGKLQARQKAITALIQYERMSD-LQPLLQQVGDME 349 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ-----S 430 R L+R+ + P+D+ +R+ + L KN + L ++++L L Q Sbjct: 350 RILARVALRTARPRDLT----RLRTALAQLPEIAKNS--QNLTASIDQL--LAQLADFSP 401 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L L + ++ P RDGG + +G +A LDE R L D + + + +L+++ E T I + Sbjct: 402 LHDLLERAIIENPPQLIRDGGVIAEGYNAELDEWRQLSDGATQYLENLEIRERESTGIDS 461 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LKI N GY+I+++ A ++ ++ RQT+ N R+ EL E+++ A Sbjct: 462 LKIGFNAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKTYEDKVLKA 515 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 ++L +E + ++ L + ++ + L A+ +++ +D+ LA A Y P Sbjct: 516 KGASLALEKQLYDELFDVLMPRLGELQLAAMMLSELDVLTNLAERADSLGYVCPSFSPMR 575 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 +K GRHP+VE+ L ++PFIAN L+ L ++TGPNMGGKST++RQ Sbjct: 576 MVNIKGGRHPVVEQVL----TEPFIANPVFLNAQR-----HLLIVTGPNMGGKSTYMRQI 626 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI +MA +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT Sbjct: 627 ALITLMAYIGSFVPAESAEIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATEN 686 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V++DEIGRGT+T DGLS+AWA E+L + + L ATH+ ELT L LK N L Sbjct: 687 SLVLIDEIGRGTSTYDGLSLAWACAEWLAKKTQSLTLFATHYFELTGLPNQLKGVANVHL 746 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYH------ 844 + + I+F+H V G A SYG+ V LAG+P VI A L E++ H Sbjct: 747 DAREHQDSIVFMHSVQEGAASKSYGLAVAALAGVPKQVIQLAKQRLAHLEEISHQTKQAN 806 Query: 845 -HNQKDMRLYYP--EIQTKESKNNLSKNDKLFVEK-IKCLNLDEMSPLTALKTLYAVK 898 H Q D+ L+ ++Q E+ L ++ VEK +K L DE++P AL LY +K Sbjct: 807 EHPQADL-LFSDGFDLQKNEAIQPLVVENE--VEKALKALQPDELTPRQALDELYRLK 861 >gi|328474141|gb|EGF44946.1| DNA mismatch repair protein MutS [Vibrio parahaemolyticus 10329] Length = 853 Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust. Identities = 311/887 (35%), Positives = 486/887 (54%), Gaps = 52/887 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 + TPMM+QY+++K+ NP+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IP Sbjct: 5 QKHTPMMQQYLKLKAENPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGSSAGEPIP 64 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+T++ Sbjct: 65 MAGVPFHAVEGYLAKLVQLGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTVTDE 119 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSE 201 LLS N + A+ ++ A +D+++G F+++ + +++++ R PRE++F E Sbjct: 120 ALLSERIDNLIAAIYHHNGKFGYATLDVTSGRFQLTEPETEESMMAELQRTAPRELLFPE 179 Query: 202 KELSHAEYKSLFETLG-----NVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 FE + N +P F+ ++ ++ + + FG + + Sbjct: 180 D----------FEPVHLMSNRNGNRRRPVWEFELDTAKQQLNQQFGTRDLVGFGVEHASL 229 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA I Y+K TQ P I + ++ +D+A R NLEI + L+G + +L Sbjct: 230 GLCAAGCLIQYVKDTQRTALPHIRSLTFDRQDHSVILDAATRRNLEITQNLAGGTDNTLA 289 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D+ T G R+ + P+ +N RLD+I I++ L +Q LK D+ Sbjct: 290 AVLDHCSTPMGSRMLKRWLHQPMRCIDTLNNRLDAIGE-IKDQGLFTDLQPTLKQIGDIE 348 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 R L+RL + P+D+A +R ++ + L L + +L + ++ + LE+ Sbjct: 349 RILARLALRSARPRDMARLRHAMQQLPELESLTASLTHPYLVKLAQYAAPIDEVCELLER 408 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + ++ P RDGG + +G + LDE R L D + + L+ E I LK+ Sbjct: 409 AIK----ENPPVVIRDGGVIAEGYNEELDEWRKLADGATEYLEKLEADERERHGIDTLKV 464 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N G+FI+V+ + ++ ++ RQT+ N R+ EL + E+++ N+ + Sbjct: 465 GYNAVHGFFIQVSRGQSHLVPP------HYVRRQTLKNAERYIIPELKEHEDKVLNSKSK 518 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E + +E L + ++ E + N + ++ ID+ LA A +YCRP + Sbjct: 519 ALALEKKLWEELFDLLMPHLEQMQNLASAVSQIDVLQNLAERADSLDYCRPTLVKDAGIH 578 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 ++ GRHP+VE Q +S PFIAN +LS S K+ ++TGPNMGGKST++RQ ALI Sbjct: 579 IQAGRHPVVE----QVTSDPFIANPIELS-----PSRKMLIITGPNMGGKSTYMRQTALI 629 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V Sbjct: 630 ALMAHIGSYVPAESAQIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLV 689 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA+ E+L L ATH+ ELT+L L N L Sbjct: 690 LMDEIGRGTSTYDGLSLAWASAEWLATQIGAMTLFATHYFELTELPNLLPNLANVHLDAV 749 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 + + I F+H V G A SYG+ V LAG+P TVI A L E+L + Sbjct: 750 EHGDSIAFMHAVQEGAASKSYGLAVAGLAGVPKTVIKNARTKLSQLEQLGQASDS----- 804 Query: 854 YPEIQTKESKNNLS--KNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P T + N LS + + ++ D+++P AL+ LY +K Sbjct: 805 -PRPSTVDIANQLSLIPEPSEIEQALSNIDPDDLTPRQALEELYRLK 850 >gi|308271253|emb|CBX27862.1| DNA mismatch repair protein mutS [uncultured Desulfobacterium sp.] Length = 875 Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust. Identities = 317/884 (35%), Positives = 498/884 (56%), Gaps = 45/884 (5%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 ++TPM++QY+ IK PD+++ YRMGDFYE+FF+DA +AS+ L ITLT R K +PM Sbjct: 5 NATPMIKQYLSIKGNYPDAILLYRMGDFYEMFFEDAEVASKVLEITLTSRNKKEEFPVPM 64 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVP YI KLI G ++AIC+Q E+P EAK LV+R+VVR++TPG + ED+ Sbjct: 65 CGVPHKAVKAYIAKLIANGFKVAICDQKENPAEAK-----GLVKRDVVRVITPGMIIEDE 119 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD-RLISDIMRIDPREIIFSEK 202 L +NY++++AR I+ IDISTG+F+++ N L +I R+ P EI+ E Sbjct: 120 FLDEKTNNYILSIARYSDNVGISCIDISTGLFRLTEGNDLLSLAEEIRRVAPSEILLPES 179 Query: 203 ELSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 + L L + + + FD+ R+ + +++ FG + AA Sbjct: 180 SKNDRFLSGLVNGLNGIPITYLDDNNFDYKKCRERLIGLFRTFSLEGFGCEDKKAGICAA 239 Query: 262 AA-ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 A + YIK+TQ + E ++ L ID + NLEI + + +GS+ +LL +D Sbjct: 240 GALVFYIKETQKQSAGHFSSIETYNLDKYLLIDETSCQNLEIFKNIRTGSKHGTLLGVLD 299 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 ++T GGRL + PL + +I RLD++ + I++ L + D+ R S Sbjct: 300 STLTPMGGRLMRSWLRYPLQNREEILYRLDAVEELKNDVTSRRNIREQLNTVYDIERLGS 359 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGA-------VEKLKKLPQSLE 432 ++ +G +D+ +++ ++L L + E L+ + + +L L Q ++ Sbjct: 360 KIVMGHSNARDLVALKN------SLLTLPSIKYIAENLKSSFFVWDSEIGELSVLAQLID 413 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 K + +D P +GG +++G LD Q K +A L+ K EETKI +LK Sbjct: 414 KAIR----EDAPPVINEGGLIKEGFSEELDILIRAGSQGKGWLAKLEAKEKEETKINSLK 469 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 ++ N GY+IEV+ + A + +I +QT+ N R+ T EL E I N+ + Sbjct: 470 VRFNKVFGYYIEVSKAQAKFVPS------HYIRKQTLVNAERYITDELKQYEKDILNSQD 523 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 ++E E F + + + + + IA +D A + +A E NY RP +++ Sbjct: 524 RRNILEYELFTQIRENAAKLNPLIQQVAGFIARLDCINAFSEVAHENNYSRPDLNDEGLI 583 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 +++GRHP+VEK + + + F+ N S D + ++ ++TGPNM GKST LRQ AL Sbjct: 584 SIEEGRHPVVEKMI---TGERFVPN----SIMMDDENNQILIITGPNMAGKSTVLRQVAL 636 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 IV+MA +GS+VPA+ A I I DK+F+RVG+ DNL+SG+STFMVEM ETA+ILN ++++S Sbjct: 637 IVLMAHIGSFVPAAKASINITDKIFTRVGALDNLSSGQSTFMVEMQETANILNNSSSRSL 696 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATL 790 VI+DEIGRGT+T DG+SIAWA EYLH+ + + L ATH+HEL DL+ + +R N + Sbjct: 697 VIMDEIGRGTSTFDGISIAWAVAEYLHDLDGKGVKTLFATHYHELIDLALTKERVKNFNI 756 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM 850 V + N+ I+FL K++ G + SYGIQV +LAG+P +I+RA IL E H Sbjct: 757 LVKEWNDEIVFLRKLVDGGTNRSYGIQVARLAGIPGKIIARAKKILYKIED-EHAISGAP 815 Query: 851 RLYYPEIQTKESKNNL---SKNDKLFVEKIKCLNLDEMSPLTAL 891 + +K S+ L +K + VE++K ++ +M+PL AL Sbjct: 816 LVAQSGAGSKHSQIQLDMFTKPEHFIVERLKNADITKMTPLDAL 859 >gi|71738021|ref|YP_275945.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. phaseolicola 1448A] gi|90109852|sp|Q48F92|MUTS_PSE14 RecName: Full=DNA mismatch repair protein mutS gi|71558574|gb|AAZ37785.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. phaseolicola 1448A] Length = 859 Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust. Identities = 314/887 (35%), Positives = 489/887 (55%), Gaps = 46/887 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L S TPMM+QY ++K+ + D L+FYRMGDFYE+F++DA A++ L ITLT RG+ G+ Sbjct: 7 DLSSHTPMMQQYWKLKNQHLDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQS 66 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCG+P H A Y+ KL+K+G + ICEQI P +K V R VVR++TPGT++ Sbjct: 67 IPMCGIPYHAAEGYLAKLVKLGESVVICEQIGDPAT-----SKGPVDRQVVRIITPGTIS 121 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIF 199 ++ LL N + AV + +A +DI++G F + + L++++ RI+P E++ Sbjct: 122 DEALLDERRDNLIAAVLGDERLFGLAVLDITSGNFSVLEIKGWENLLAELERINPVELLI 181 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 + + L A + F+ + + ++ + FG + Sbjct: 182 PDDW-----PQGLPAEKRRGARRRAPWDFERDSAHKSLCQQFSTQDLKGFGCENLTLAIG 236 Query: 260 AAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA + SY K+TQ P + E + T+ +D+A+R NLE+ LSG R+ +L + Sbjct: 237 AAGCLLSYAKETQRTALPHLRSLRHERLDDTVILDAASRRNLELDTNLSGGRDNTLQSVM 296 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D T G RL + PL D T + R SI F++ N +Q LK D+ R L Sbjct: 297 DRCQTAMGTRLLTRWLNRPLRDLTILQARQTSITCFLERYRFEN-LQPQLKEIGDIERIL 355 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 +R+ + P+D+A +RD + S + L + + L+ + P+ L L Sbjct: 356 ARIGLRNARPRDLARLRDAL-SALPELQQAMTDLEAPHLQQLAQTASTYPE-LADLLQRA 413 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + D+ P RDGG L+ G DA LD+ +SL + + + + L+ + T + NLK+ +N Sbjct: 414 IIDNPPAVIRDGGVLKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLANLKVGYNRV 473 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GYFIE+ S A D +I RQT+ RF T EL + E++ +A + AL E Sbjct: 474 HGYFIELPSKQAEQAPAD------YIRRQTLKGAERFITPELKEFEDKALSAKSRALARE 527 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 +E L +I L + + +A +D+ LA A + P ++ GR Sbjct: 528 KMLYEALLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLDLNCPRFVAEPCMRIEQGR 587 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ L S PF+AND L +S ++ ++TGPNMGGKST++RQ ALIV++A Sbjct: 588 HPVVEQVL----STPFVANDLALD-----DSTRMLVITGPNMGGKSTYMRQTALIVLLAH 638 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V++DE+ Sbjct: 639 IGSFVPAASCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEV 698 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGLS+AWA E L + R L ATH+ ELT L +S N L ++ NE Sbjct: 699 GRGTSTFDGLSLAWAAAECLAQL-RAYTLFATHYFELTVLPESEPLVSNVHLNATEHNER 757 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 I+FLH+V+PG A SYG+ V +LAG+P VISRA + L+ E L + + + Sbjct: 758 IVFLHRVLPGPASQSYGLAVAQLAGVPGKVISRAKEHLQRLET--------TSLPHEQPR 809 Query: 859 TKESKNNLSKNDKLF-------VEKIKCLNLDEMSPLTALKTLYAVK 898 K K + + +F ++++ + +D+M+P AL LY ++ Sbjct: 810 AKPGKPAVPQQSDMFASLPHPVLDELSKVKVDDMTPRQALDLLYTLQ 856 >gi|158521140|ref|YP_001529010.1| DNA mismatch repair protein MutS [Desulfococcus oleovorans Hxd3] gi|238686899|sp|A8ZXH5|MUTS_DESOH RecName: Full=DNA mismatch repair protein mutS gi|158509966|gb|ABW66933.1| DNA mismatch repair protein MutS [Desulfococcus oleovorans Hxd3] Length = 881 Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust. Identities = 324/897 (36%), Positives = 492/897 (54%), Gaps = 53/897 (5%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 +TPMM+QY+ IK + D+++FYRMGDFYE+FF+DA A+ L I LT R K+ IPM Sbjct: 5 GATPMMQQYLSIKEQHRDAILFYRMGDFYEMFFEDAQTAAPVLEIALTSRNKNDTDPIPM 64 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVPV A+ YI +LI+ G ++A+CEQ E P AK LVRR+VVR+VTPG + ++ Sbjct: 65 CGVPVKAADGYIGRLIENGFKVAVCEQTEDPAAAK-----GLVRRDVVRIVTPGMIIDNA 119 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLIS-DIMRIDPREIIFSEK 202 LL +NY++ +A A +DISTG F++ S+ R + +++RI PRE++ E Sbjct: 120 LLEKGTNNYVVCLAHADGVVGFASVDISTGTFRVCESSDLRAVRHELLRIAPREVVIPES 179 Query: 203 ELSHAE---YKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKT 258 A + SLF +A N FD+ + R+ D + +++ FG + Sbjct: 180 GADDAALSPFVSLFPPAIRTTLA--NREFDYRTACQRLTDQFQTRSLEGFGCRGLKPGIV 237 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKT 317 AA A +SY+ TQ + E I L +D NLE++ L + R+ +L+ Sbjct: 238 AAGALLSYVNDTQRQKASHLTGLEVYSIDQYLLMDEVTCRNLELVANLRNNGRQGTLIDV 297 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D +T G RL + PL + IN RLD++ + ++++LK D+ R Sbjct: 298 LDACVTAMGSRLLRRWMLYPLLSAEAINRRLDAVAEAKEGLGTRKAVRELLKQVYDIERL 357 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRG------------AVEKLK 425 SR +GR P+D+ ++ LF L EL+ E L Sbjct: 358 TSRAVMGRVTPRDLLALKQ---------TLFALPGLATELKSFDSPFFSFAGEPGPEGLD 408 Query: 426 KLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE 485 KL L L + + +D P DGG + L E ++ K +A L+ E+ Sbjct: 409 KL-AGLADLLKAAVREDAPVSIADGGVINPDYHPRLAELVTISRDGKSSLARLEATEKEK 467 Query: 486 TKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 T I LK+++N GY+IEV S + ++ +QT+ N R+ T EL E Sbjct: 468 TGISTLKVRYNKVFGYYIEVPRSQVGAVPA------HYVRKQTLVNGERYITDELKVFEE 521 Query: 546 RITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPI 605 + A + +E E F + + S L ++V A ID+ ALA +A + +Y RP Sbjct: 522 KALGAEEQRVRLEQELFADIVGRVTACSPMLFAVARVAAGIDVLCALAQVADDHDYVRPE 581 Query: 606 IDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKST 665 + + I+++GRHP+VE+ L S + ++ N L ND + +L ++TGPNM GKST Sbjct: 582 MLSGGEIIIEEGRHPVVERML---SGERYVPNSITL---NDTDR-QLLIITGPNMAGKST 634 Query: 666 FLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILN 725 LR+ AL +MAQMGS+VPA A +G+VD+LF+RVG+ DNLASG+STFMVEM ETA+I+N Sbjct: 635 VLRKVALFSVMAQMGSFVPARRAAMGVVDRLFTRVGALDNLASGQSTFMVEMEETANIIN 694 Query: 726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRG---LLATHFHELTDLSKSL 782 AT +S V++DEIGRGT+T DGLSIAWA E LH+ + RG L ATH+HELT+L + Sbjct: 695 NATPKSLVVIDEIGRGTSTYDGLSIAWAVAEALHDLH-GRGVKTLFATHYHELTELENTR 753 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 R N + V + N+ IIFL K++ G + SYGIQV +LAG+P VI+RA IL E+ Sbjct: 754 PRVKNFHIAVKEWNDTIIFLRKLVEGSTNRSYGIQVARLAGIPGPVIARAKKILLDIEQG 813 Query: 843 YHHNQKDMRLYYPEIQTKESKNNL-SKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + Q+ + +L + +++ V++++ +++ M+PL AL L+ ++ Sbjct: 814 TYSFEAKSGTAPGTGQSGPVQLSLFTPPEQMLVDRLQKVDISTMTPLEALNCLHELQ 870 >gi|262373025|ref|ZP_06066304.1| DNA mismatch repair protein MutS [Acinetobacter junii SH205] gi|262313050|gb|EEY94135.1| DNA mismatch repair protein MutS [Acinetobacter junii SH205] Length = 885 Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust. Identities = 321/837 (38%), Positives = 476/837 (56%), Gaps = 41/837 (4%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L S TPMM+QY+++K P +L+FYRMGDFYELFF+DA LA++ LGITLT RGK G+ Sbjct: 9 DLSSHTPMMQQYLKVKMEYPHALLFYRMGDFYELFFEDAHLAAKLLGITLTHRGKTNGEP 68 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM GVP H+A Y+ +L+K G +AICEQ+ + K V R VVR++TPGTLT Sbjct: 69 IPMAGVPYHSAEGYLARLVKSGRTVAICEQV------GEVTGKGPVERKVVRVLTPGTLT 122 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH--DRLISDIMRIDPREII 198 +D LLS S+ L+A+ + + A +D+S GIFK+ + ++L ++ R+ P EI+ Sbjct: 123 DDALLSSYQSSNLVALCIQQNQIGFALLDLSAGIFKVQQQTYKPEQLPIELARLMPSEIL 182 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 E + + + + L +PNV F+ + ++ + D + ++T+ FG + K Sbjct: 183 IDEDLVDQNIIEHIKKNLDCPITKRPNVDFNQNNAQKTLCDQFAVSTLSGFGLDPIPLAK 242 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFI--DSAARSNLEILRTLSGSREQSLL 315 AAAA I Y K+TQ P I + E QST FI D R NLEI+ L SL Sbjct: 243 AAAAALIHYAKETQKTALPHIRSIQIE--QSTDFIALDPITRRNLEIIEPLF-EHGTSLF 299 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 + I+ T GGRL + + P+ D+ ++ RLD+I ++ +P++ +LK D+ Sbjct: 300 QLINDCQTAMGGRLLSRTLMQPIRDTAILDARLDAIEQLLKG-YHESPVRLVLKEIGDIE 358 Query: 376 RSLSRLKIGRGEPKDIAVIRDG------IRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 R LSR+ +G P+D+ +R +R + + K+ L EL + K Sbjct: 359 RVLSRVALGSARPRDLVQLRQACAQIPFLRHALAPVLNTQKSKLLIELDQQLGDFK---- 414 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 SL + L + + ++ P RDG + +G D LDE R +RD + + + L++K + T I Sbjct: 415 SLHQHLIAAIVENPPVLLRDGNVIAEGYDDELDELRKIRDHAGQFLIDLEIKERQRTGIN 474 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LKI +N GY+IE+T + A D +I RQT+ N R+ T EL E+++ + Sbjct: 475 TLKIGYNRVSGYYIELTRAQAEQAPAD------YIRRQTLKNAERYITPELKSFEDKVLS 528 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 + + AL E FE L + + + L S IA ID+ A A+ N+ RP Sbjct: 529 SESRALAREKLLFESLLDELRQNIAQLQMMSAAIAHIDVLANFAYQARLNNWARPEYTPE 588 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 T ++ GRHP+VE K PF ND L + ++ ++TGPNMGGKSTF+RQ Sbjct: 589 TCIKIQAGRHPVVESLNK----APFTPNDTFLD-----HQHRMAIITGPNMGGKSTFMRQ 639 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI ++A G +VPA A +G +D++F+R+GSAD+L++G+STFMVEM ET+ IL+ AT+ Sbjct: 640 TALISLLAYCGCFVPAKSAKLGSIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATS 699 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 QS V++DE+GRGT+T DGLS+AWA + L + +C L ATH+ ELT+L S N Sbjct: 700 QSLVLMDEVGRGTSTYDGLSLAWACVLDLTKRIKCLCLFATHYFELTELG-SEAGIDNYH 758 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN 846 + + N +I LHKV G A S+G+QV KLAG+P VI A LK EK H + Sbjct: 759 VTAQELNGNLILLHKVQHGPASQSHGLQVAKLAGIPANVIKDAQKRLKILEKQQHQH 815 >gi|213969151|ref|ZP_03397290.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. tomato T1] gi|301383954|ref|ZP_07232372.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. tomato Max13] gi|302064160|ref|ZP_07255701.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. tomato K40] gi|302134754|ref|ZP_07260744.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926149|gb|EEB59705.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. tomato T1] Length = 859 Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust. Identities = 310/884 (35%), Positives = 490/884 (55%), Gaps = 40/884 (4%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L + TPMM+QY ++K+ + D L+FYRMGDFYE+F++DA A++ L ITLT RG+ G+ Sbjct: 7 DLSAHTPMMQQYWKLKNQHLDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQS 66 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCG+P H A Y+ KL+K+G + ICEQI P +K V R VVR++TPGT++ Sbjct: 67 IPMCGIPYHAAEGYLAKLVKLGESVVICEQIGDPAT-----SKGPVDRQVVRIITPGTIS 121 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIF 199 ++ LL N + AV + +A +DI++G F + + L++++ RI+P E++ Sbjct: 122 DEALLDERRDNLIAAVLGDERLFGLAVLDITSGNFSVLEIKGWENLLAELERINPVELLI 181 Query: 200 SE---KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 + + L +++ A + F+ + + ++ + FG + Sbjct: 182 PDDWPQGLPAEKHRG--------ARRRAPWDFERDSAHKSLCQQFSTQDLKGFGCETLTL 233 Query: 257 KTAAAAA-ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA + Y K+TQ P + E + T+ +D+A+R NLE+ LSG R+ +L Sbjct: 234 AIGAAGCLLGYAKETQRTALPHLRSLRHERLDDTVILDAASRRNLELDTNLSGGRDNTLQ 293 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D T G RL + PL D + + R SI F++ N +Q LK D+ Sbjct: 294 SVMDRCQTAMGTRLLTRWLNRPLRDLSILQARQTSITCFLERYRFEN-LQPQLKEIGDIE 352 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R L+R+ + P+D+A +RD + + + D P L+ + P+ L L Sbjct: 353 RILARIGLRNARPRDLARLRDALSALPELQQAMTDLDAP-HLQQLAQTASTYPE-LADLL 410 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 ++D+ P RDGG L+ G DA LDE +SL + + + + L+ + T + +LK+ + Sbjct: 411 QRAINDNPPAVIRDGGVLKTGYDAELDELQSLSENAGQFLIDLEAREKARTGLSHLKVGY 470 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GYFIE+ S A D +I RQT+ RF T EL + E++ +A + AL Sbjct: 471 NRVHGYFIELPSKQAEQAPAD------YIRRQTLKGAERFITPELKEFEDKALSAKSRAL 524 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 E +E L +I L + + +A +D+ LA A + P ++ Sbjct: 525 AREKMLYETLLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLDLNCPRFVAEPCMRIE 584 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ L S PF+AND L +S ++ ++TGPNMGGKST++RQ ALIV+ Sbjct: 585 QGRHPVVEQVL----STPFVANDLALD-----DSTRMLIITGPNMGGKSTYMRQTALIVL 635 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +A +GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V++ Sbjct: 636 LAHIGSFVPAASCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLM 695 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGT+T DGLS+AWA E L + R L ATH+ ELT L +S +N L ++ Sbjct: 696 DEVGRGTSTFDGLSLAWAAAECLAQL-RAYTLFATHYFELTVLPESEPLVNNVHLNATEH 754 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL-YHHNQKDMRLYY 854 NE I+FLH+V+PG A SYG+ V +LAG+P VI+RA + L+ E H Q + Sbjct: 755 NERIVFLHRVLPGPASQSYGLAVAQLAGVPGKVITRAKEHLQRLETTSLPHEQPRAKPGK 814 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P I + + + ++++ + +D+M+P AL LY ++ Sbjct: 815 PAI--PQQSDMFASLPHPVLDELSKIKVDDMTPRQALDLLYTLQ 856 >gi|28899326|ref|NP_798931.1| DNA mismatch repair protein MutS [Vibrio parahaemolyticus RIMD 2210633] gi|260361828|ref|ZP_05774844.1| DNA mismatch repair protein MutS [Vibrio parahaemolyticus K5030] gi|260878983|ref|ZP_05891338.1| DNA mismatch repair protein MutS [Vibrio parahaemolyticus AN-5034] gi|260895456|ref|ZP_05903952.1| DNA mismatch repair protein MutS [Vibrio parahaemolyticus Peru-466] gi|31076795|sp|Q87LQ9|MUTS_VIBPA RecName: Full=DNA mismatch repair protein mutS gi|28807550|dbj|BAC60815.1| DNA mismatch repair protein MutS [Vibrio parahaemolyticus RIMD 2210633] gi|308088221|gb|EFO37916.1| DNA mismatch repair protein MutS [Vibrio parahaemolyticus Peru-466] gi|308090457|gb|EFO40152.1| DNA mismatch repair protein MutS [Vibrio parahaemolyticus AN-5034] gi|308114478|gb|EFO52018.1| DNA mismatch repair protein MutS [Vibrio parahaemolyticus K5030] Length = 853 Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust. Identities = 310/887 (34%), Positives = 486/887 (54%), Gaps = 52/887 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 + TPMM+QY+++K+ NP+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IP Sbjct: 5 QKHTPMMQQYLKLKAENPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGSSAGEPIP 64 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+T++ Sbjct: 65 MAGVPFHAVEGYLAKLVQLGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTVTDE 119 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSE 201 LLS N + A+ ++ A +D+++G F+++ + +++++ R PRE++F E Sbjct: 120 ALLSERLDNLIAAIYHHNGKFGYATLDVTSGRFQLTEPETEEAMMAELQRTAPRELLFPE 179 Query: 202 KELSHAEYKSLFETLG-----NVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 FE + N +P F+ ++ ++ + + FG + + Sbjct: 180 D----------FEPVHLMSNRNGNRRRPVWEFELDTAKQQLNQQFGTRDLVGFGVEHASL 229 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA I Y+K TQ P I + ++ +D+A R NLEI + L+G + +L Sbjct: 230 GLCAAGCLIQYVKDTQRTALPHIRSLTFDRQDHSVILDAATRRNLEITQNLAGGTDNTLA 289 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D+ T G R+ + P+ +N RLD+I I++ L +Q LK D+ Sbjct: 290 AVLDHCSTPMGSRMLKRWLHQPMRCIDTLNNRLDAIGE-IKDQGLFTDLQPTLKQIGDIE 348 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 R L+RL + P+D+A +R ++ + L L + +L + ++ + LE+ Sbjct: 349 RILARLALRSARPRDMARLRHAMQQLPELESLTASLTHPYLVKLAQYAAPIDEVCELLER 408 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + ++ P RDGG + +G + LDE R L D + + L+ E I LK+ Sbjct: 409 AIK----ENPPVVIRDGGVIAEGYNEELDEWRKLADGATEYLEKLEADERERHGIDTLKV 464 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N G+FI+V+ + ++ ++ RQT+ N R+ EL + E+++ N+ + Sbjct: 465 GYNAVHGFFIQVSRGQSHLVPP------HYVRRQTLKNAERYIIPELKEHEDKVLNSKSK 518 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E + +E L + ++ E + N + ++ +D+ LA A +YCRP + Sbjct: 519 ALALEKKLWEELFDLLMPHLEQMQNLASAVSQMDVLQNLAERADSLDYCRPTLVKDAGIH 578 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 ++ GRHP+VE Q +S PFIAN +LS S K+ ++TGPNMGGKST++RQ ALI Sbjct: 579 IQAGRHPVVE----QVTSDPFIANPIELS-----PSRKMLIITGPNMGGKSTYMRQTALI 629 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V Sbjct: 630 ALMAHIGSYVPAESAQIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLV 689 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA+ E+L L ATH+ ELT+L L N L Sbjct: 690 LMDEIGRGTSTYDGLSLAWASAEWLATQIGAMTLFATHYFELTELPNLLPNLANVHLDAV 749 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 + + I F+H V G A SYG+ V LAG+P TVI A L E+L + Sbjct: 750 EHGDSIAFMHAVQEGAASKSYGLAVAGLAGVPKTVIKNARTKLSQLEQLGQASDS----- 804 Query: 854 YPEIQTKESKNNLS--KNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P T + N LS + + ++ D+++P AL+ LY +K Sbjct: 805 -PRPSTVDVANQLSLIPEPSEIEQALSNIDPDDLTPRQALEELYRLK 850 >gi|254360921|ref|ZP_04977067.1| DNA mismatch repair protein MutS [Mannheimia haemolytica PHL213] gi|153092400|gb|EDN73463.1| DNA mismatch repair protein MutS [Mannheimia haemolytica PHL213] Length = 865 Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust. Identities = 320/898 (35%), Positives = 501/898 (55%), Gaps = 54/898 (6%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 + ++ + TPMM+QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG+ Sbjct: 1 MTQDFSTHTPMMQQYLQLKAQNPDILLFYRMGDFYELFYDDAKRAAALLDISLTKRGQSA 60 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G+ IPM GVP H Y+ KL+ +G +AICEQI P +K V R VVR+VTPG Sbjct: 61 GEPIPMAGVPYHAVEGYLAKLVALGESVAICEQIGDPAT-----SKGPVERKVVRIVTPG 115 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPRE 196 T++++ LL N + AV + +AIA +D+++G F IS ++ + L +++ R+ P E Sbjct: 116 TVSDEALLPERQDNLVAAVYEEKGTFAIATLDMTSGRFLISELASKEALSAELQRVQPAE 175 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 I+++E + S A + ++ L +P F+ + + + T+ FG + V Sbjct: 176 ILYAE-DFSAASILTNYKGLRR----RPVWEFELVTAIQLLNRQFGTQTLAGFGVEKAVV 230 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA + Y ++TQ P I T+ +D+A R NLE+ + L+G E +L Sbjct: 231 ALCAAGCVLHYAQETQRTALPHINAIHLAQHSDTILLDAATRRNLELTQNLAGGTENTLA 290 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D +T G RL I P+ D K+ R +I IQ + + +Q +L+ D+ Sbjct: 291 AVLDKCVTPMGSRLLKRWIHQPIRDCGKLQARQKAITALIQYERMSD-LQPLLQQVGDME 349 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ-----S 430 R L+R+ + P+D+ +R+ + L KN + L ++++L L Q Sbjct: 350 RILARVALRTARPRDLT----RLRTALAQLPEIAKNS--QNLTASIDQL--LAQLADFSP 401 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L L + ++ P RDGG + +G +A LDE R L D + + + +L+++ E T I + Sbjct: 402 LHDLLERAIIENPPQLIRDGGVIAEGYNAELDEWRQLSDGATQYLENLEIRERESTGIDS 461 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LKI N GY+I+++ A ++ ++ RQT+ N R+ EL E+++ A Sbjct: 462 LKIGFNAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKTYEDKVLKA 515 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 ++L +E + ++ L + ++ + L A+ +++ +D+ LA A Y P Sbjct: 516 KGASLALEKQLYDELFDVLMPRLGELQLAAMMLSELDVLTNLAERADSLGYVCPSFSPMR 575 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 +K GRHP+VE+ L ++PFIAN L+ + L ++TGPNMGGKST++RQ Sbjct: 576 MVNIKGGRHPVVEQVL----TEPFIANPVFLN-----SQRHLLIVTGPNMGGKSTYMRQI 626 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI +MA +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT Sbjct: 627 ALITLMAYIGSFVPAESAEIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATEN 686 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V++DEIGRGT+T DGLS+AWA E+L + + L ATH+ ELT L LK N L Sbjct: 687 SLVLIDEIGRGTSTYDGLSLAWACAEWLAKKTQSLTLFATHYFELTGLPNQLKGVANVHL 746 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYH------ 844 + + I+F+H V G A SYG+ V LAG+P VI A L E++ H Sbjct: 747 DAREHQDSIVFMHSVQEGAASKSYGLAVAALAGVPKQVIQLAKQRLAHLEEISHQTKQAN 806 Query: 845 -HNQKDMRLYYP--EIQTKESKNNLSKNDKLFVEK-IKCLNLDEMSPLTALKTLYAVK 898 H Q D+ L+ ++Q E+ L ++ VEK +K L DE++P AL LY +K Sbjct: 807 EHPQADL-LFSDGFDLQKNEAIQPLVVENE--VEKALKALQPDELTPRQALDELYRLK 861 >gi|45645393|gb|AAS73296.1| DNA mismatch repair protein [Haemophilus influenzae] Length = 861 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 314/889 (35%), Positives = 495/889 (55%), Gaps = 44/889 (4%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 EEN + TPMM+QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG+ G Sbjct: 4 EENFQQHTPMMQQYLKLKAENPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGQSAG 63 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM G+P H Y+ KL+++G +AICEQI P +K V R +VR+VTPGT Sbjct: 64 QPIPMAGMPYHAVEGYLAKLVQLGESVAICEQIGDP-----STSKGPVERQIVRIVTPGT 118 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N + AV + + ++ +A +D+++G F++ ++ + L +++ RI P E+ Sbjct: 119 VSDEALLPERQDNLIAAVYQEKEKFGLATLDMTSGRFQLCEPADKETLRAELQRIAPVEL 178 Query: 198 IFSEK--ELSHAEY-KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 ++ E+ E++ E+ K L +P F+ S + + + + + FG Sbjct: 179 LYCEEFNEMAAIEHCKGLRR--------RPIWEFELSTAITLLNRQFGTKDLRAFG---- 226 Query: 255 VEKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS 309 VEK+ AA + Y K+TQ P I Q + +D+A R NLE+ + L+G Sbjct: 227 VEKSPLGLSAAGCLLQYAKETQRTALPHIQSISLIQNQDCIQLDAATRRNLELTQNLAGG 286 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 E +L +D +T G RL I P+ D K+ R SI + N L++ +Q L+ Sbjct: 287 TENTLSSVLDKCVTPMGSRLLKRWIHQPVRDVEKLKQRQQSIAEIL-NFDLVDELQPYLQ 345 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 D+ R L+R+ + P+D+ +R + I L ++ L ++ + Sbjct: 346 LVGDMERILARVALRSARPRDLTRLRTALEQ-IPALRTIVQQKTSPFLTALFSQIADFSE 404 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 + L L + P RDGG + +G A LDE R L D + + + +L+ + E T I Sbjct: 405 QWD-LLQRALIETPPLLIRDGGVIAEGYHAELDEWRMLSDGATQYLENLEKRERESTGID 463 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LKI N GY+I+++ A ++ ++ RQT+ N R+ EL + E+++ Sbjct: 464 TLKIGFNAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKEYEDKVLK 517 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 + +AL +E + ++ L + ++ +L AS ++ +D+ + LA A NY P + Sbjct: 518 SKGAALALEKQLYDELFDLLLPHLGTLQLASLALSELDVLVNLAERADTLNYVMPTFCDE 577 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 + +K+GRHP+VE+ LK PFIAN +L+ ++ L ++TGPNMGGKST++RQ Sbjct: 578 VSVKIKNGRHPVVEQVLK----DPFIANPVELN-----HNRHLLVITGPNMGGKSTYMRQ 628 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI ++A +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT Sbjct: 629 TALITLLAYIGSFVPADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATA 688 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 QS V++DEIGRGT+T DGLS+AWA E+L + R L ATH+ ELT L + L+ N Sbjct: 689 QSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLESIANIH 748 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 L + N I F+H V G A SYG+ V LAG+P +VI A L EK ++ + Sbjct: 749 LDALEHNNTIAFMHAVQDGAASKSYGLAVAALAGVPQSVIKLAKQKLTQLEKNSSYSAEQ 808 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E + + + E I+ L+ D++SP AL LY +K Sbjct: 809 QIQALREANHNQGELFFEQETDALREAIEKLDPDDLSPKQALAYLYQLK 857 >gi|329122519|ref|ZP_08251104.1| DNA mismatch repair protein MutS [Haemophilus aegyptius ATCC 11116] gi|327473209|gb|EGF18631.1| DNA mismatch repair protein MutS [Haemophilus aegyptius ATCC 11116] Length = 861 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 313/889 (35%), Positives = 496/889 (55%), Gaps = 44/889 (4%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 EEN + TPMM+QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG+ G Sbjct: 4 EENFQQHTPMMQQYLKLKAENPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGQSAG 63 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM G+P H Y+ KL+++G +AICEQI P +K V R +VR+VTPGT Sbjct: 64 QPIPMAGMPYHAVEGYLAKLVQLGESVAICEQIGDP-----TTSKGPVERQIVRIVTPGT 118 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N + AV + + ++ +A +D+++G F++ ++ + L +++ RI P E+ Sbjct: 119 VSDEALLPERQDNLIAAVYQEKEKFGLATLDMTSGRFQLCEPADKETLRAELQRIAPVEL 178 Query: 198 IFSEK--ELSHAEY-KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 ++ E+ E++ E+ K L +P F+ S + + + + + FG Sbjct: 179 LYCEEFNEMAAIEHCKGLRR--------RPIWEFELSTAITLLNHQFGTKDLRAFG---- 226 Query: 255 VEKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS 309 VEK+ AA + Y K+TQ P I Q + +D A R NLE+ + L+G Sbjct: 227 VEKSPLGLSAAGCLLQYAKETQRTALPHIQSISLIQNQDCIQLDVATRRNLELTQNLAGG 286 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 E +L +D +T G RL I P+ D K+ R +I + N L++ +Q L+ Sbjct: 287 TENTLASVLDKCVTPMGSRLLKRWIHQPIRDVEKLEQRQQAIAEIL-NFDLVDELQPYLQ 345 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 D+ R L+R+ + P+D+ +R + I L ++ P L ++ + Sbjct: 346 LVGDMERILARVALRSARPRDLTRLRTALEQ-IPALRAIVQQKTPLFLTALFSQIADFSE 404 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 + L L + P RDGG + +G A LDE R L D + + + +L+ + E T I Sbjct: 405 QCD-LLQRALIETPPLLIRDGGVIAEGYHAELDEWRMLSDGATQYLENLEKRERESTGID 463 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LKI N GY+I+++ A ++ ++ RQT+ N R+ EL + E+++ Sbjct: 464 TLKIGFNAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKEYEDKVLK 517 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 + +AL +E + ++ L + ++ +L AS ++ +D+ + LA A NY P + Sbjct: 518 SKGAALALEKQLYDELFDLLLPHLGALQLASLALSELDVLVNLAERADTLNYVMPTFCDE 577 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 + +++GRHP+VE+ LK PFIAN +L+ ++ L ++TGPNMGGKST++RQ Sbjct: 578 VSVKIENGRHPVVEQVLK----DPFIANPVELN-----HNRHLLVITGPNMGGKSTYMRQ 628 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI ++A +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT Sbjct: 629 TALITLLAYIGSFVPADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATA 688 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 QS V++DEIGRGT+T DGLS+AWA E+L + R L ATH+ ELT L + L+ N Sbjct: 689 QSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLEGIANIH 748 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 L + N I F+H V G A SYG+ V LAG+P +VI A L EK ++ ++ Sbjct: 749 LDALEHNNTIAFMHAVQDGAASKSYGLAVAALAGVPQSVIKLAKQKLTQLEKNSSYSVEE 808 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E + + + E I+ L+ D++SP AL LY +K Sbjct: 809 QIQALREANHNQGELLFEQETDALREAIEKLDPDDLSPKQALAYLYQLK 857 >gi|114046701|ref|YP_737251.1| DNA mismatch repair protein MutS [Shewanella sp. MR-7] gi|123326746|sp|Q0HXG1|MUTS_SHESR RecName: Full=DNA mismatch repair protein mutS gi|113888143|gb|ABI42194.1| DNA mismatch repair protein MutS [Shewanella sp. MR-7] Length = 861 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 316/886 (35%), Positives = 484/886 (54%), Gaps = 41/886 (4%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 ++L+ TPMMRQY+ +K+ + D L+FYRMGDFYELF+DDA AS LGI+LT RGK G Sbjct: 7 DDLEKHTPMMRQYLTMKAEHHDMLLFYRMGDFYELFYDDAKRASELLGISLTARGKSGGD 66 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H Y+ KL++IG +AICEQI P +K V R VVR+VTPGTL Sbjct: 67 PIPMAGIPYHAVEGYLAKLVQIGQSVAICEQIGDPATSK-----GPVERKVVRIVTPGTL 121 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREII 198 T++ LL N L AV + + + A +D+S+G F I+ + L +++ R +P EI+ Sbjct: 122 TDEALLQERQDNLLAAVYQGKVGFGYATLDVSSGRFVIAELETKESLEAELQRTNPVEIL 181 Query: 199 FSEK----ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFS 253 +SE EL H +K +P FD+ S + + + FG + + Sbjct: 182 YSEDFDAMELLH-HFKG--------KRRRPEWEFDYDTSIKLLLAQFGTKDLHGFGITDA 232 Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 ++ AA + Y+K TQ P I R + T+ +D+A R NLE+ + LSG R+ + Sbjct: 233 RLSLQAAGCLMQYVKDTQRTALPHINAITRFNQTDTIVLDAATRRNLELTQNLSGGRDNT 292 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D + T G R+ I PL D +I R ++N ++ + + LK+ D Sbjct: 293 LAAVLDNTATAMGSRMLQRWIHQPLRDHAQIFARQTAVNELLET-TAHESLHEQLKALGD 351 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R ++RL + P+D A +R + + + P ++ + L + P+ ++ Sbjct: 352 IERIMARLALRTARPRDFARLRQALNLLPQLQQSLAQLSAPHTVKLG-QLLGEFPEE-QQ 409 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + D+ P RDGG +R+G +A LDE R L + + + L+ + E T I LK+ Sbjct: 410 LLERAIVDNPPMLIRDGGVIREGYNAELDEWRGLSEGATDYLVQLEAREKERTGIATLKV 469 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GY+IEV+ + + + + RQT+ N+ R+ T EL + E ++ ++ Sbjct: 470 GYNRVHGYYIEVSRLQSQQVPLN------YQRRQTLKNMERYITPELKEYEEKVLSSQGK 523 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E + ++ L + I+ + L ++ A +D+ A A+ Y P + + Sbjct: 524 ALALEKQLWDELFDLILPKLHELQAFARAAAELDVLSNFAERAETLGYTCPELSSEIGVK 583 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 ++ GRHP+VE+ S PFIAN L N ++ ++TGPNMGGKST++RQ ALI Sbjct: 584 IEAGRHPVVERV----SQTPFIANPVTL-----HNQRRMLIVTGPNMGGKSTYMRQVALI 634 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +G +V A A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT QS V Sbjct: 635 TLMAHIGCFVSADRAIIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATAQSLV 694 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AW+ EYL + L ATH+ ELT L + + +N L Sbjct: 695 LMDEIGRGTSTYDGLSLAWSAAEYLAQQIGAMTLFATHYFELTQLPELMAGVYNVHLDAI 754 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-DMRL 852 + + I F+H V G A SYG+QV LAG+P VI A L E H + ++ Sbjct: 755 EHEDTIAFMHAVQEGAASKSYGLQVASLAGVPARVIKAAKHKLHQLESRDHQVEGVNVNG 814 Query: 853 YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 IQT + +N V K+K +N D ++P AL LY +K Sbjct: 815 TRAPIQTLLALPEPVENPA--VSKLKAINPDNLTPKQALDLLYELK 858 >gi|83719722|ref|YP_442443.1| DNA mismatch repair protein MutS [Burkholderia thailandensis E264] gi|257138646|ref|ZP_05586908.1| DNA mismatch repair protein MutS [Burkholderia thailandensis E264] gi|123537049|sp|Q2SXA6|MUTS_BURTA RecName: Full=DNA mismatch repair protein mutS gi|83653547|gb|ABC37610.1| DNA mismatch repair protein MutS [Burkholderia thailandensis E264] Length = 893 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 313/901 (34%), Positives = 473/901 (52%), Gaps = 43/901 (4%) Query: 13 SEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTK 72 S+Q E + TPMM+QY+ IK+ +P++LVFYRMGDFYELFF+DA A+R L +TLT+ Sbjct: 11 SKQQLTEAAFSNHTPMMQQYLRIKAEHPETLVFYRMGDFYELFFEDAEKAARLLDLTLTQ 70 Query: 73 RGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVR 132 RG G I M GVP H Y+ KL+K G AICEQI P +K V R VVR Sbjct: 71 RGASAGTPIKMAGVPHHAVEQYLAKLVKFGESAAICEQIGDPAT-----SKGPVERKVVR 125 Query: 133 LVTPGTLTEDQLLSPTDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTSNHDRLI 186 +VTPGTLT+ LLS +L+A+ + + +AW+++++G +++ D+L Sbjct: 126 VVTPGTLTDAALLSDKSDVFLLALCVGHNKRGVASTIGLAWLNLASGALRLAEIAPDQLG 185 Query: 187 SDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITT 245 + + RI P EI+ ++ + G A+ + P FD + R+ D + + Sbjct: 186 AALERIRPAEILAADGAIEAV-------PAGTGAITRVPAWHFDIASGTQRLCDQLEVAS 238 Query: 246 VDTFGSFSQVEKTAAAAAIS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILR 304 +D FG+ + AA A+ Y TQ + + E+ + +D + R NLE+ Sbjct: 239 LDGFGAQALTSANGAAGALLIYAAATQGQQLRHVRSLKVENESEYIGLDPSTRRNLELTE 298 Query: 305 TLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILI--N 362 TL G+ +L +D T G RL + P S R +I + P+ + + Sbjct: 299 TLRGTESPTLYSLLDTCCTAMGSRLLRHWLHHPPRASVAAQARHQAIGALLDAPVHVGLD 358 Query: 363 PIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELR-GAV 421 ++ L+ DV R RL + P+D++ +RD + + L + P G + Sbjct: 359 SLRSALRQIADVERITGRLALLSARPRDLSSLRDTF-AALPALRERVAEIAPNAAALGRL 417 Query: 422 EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLK 481 E + P L+ ++ + RDGG + G DA LDE R + + + + L+ + Sbjct: 418 EAALEPPPGCLDLLTRAIAPEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLETR 477 Query: 482 YAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELI 541 T I NL++++N G++IEVT + D + RQT+ N R+ T EL Sbjct: 478 ERARTGIPNLRVEYNKVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELK 531 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 E++ +A AL E ++ + A++ E + +A +D+ A A A+ ++ Sbjct: 532 TFEDKALSAQERALARERALYDSVLQALLPHIEGCQRVASGLAELDLLAAFAERARTLDW 591 Query: 602 CRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 P + + GRHP+VE ++Q FIANDC L+ +D+ KL L+TGPNMG Sbjct: 592 VAPEFIDEIGIEIDQGRHPVVEAQVEQ-----FIANDCALN--SDR---KLLLITGPNMG 641 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKSTF+RQ ALI +MA +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A Sbjct: 642 GKSTFMRQTALIALMAYVGSYVPAKAARFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAA 701 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS 781 +ILN AT QS V++DEIGRGT+T DGL++AWA +L NRC L ATH+ ELT L Sbjct: 702 AILNDATPQSLVLMDEIGRGTSTFDGLALAWAIARHLLSHNRCYTLFATHYFELTQLPAE 761 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 + N L + GI+FLH V G A+ SYG+QV +LAG+P VI A L E+ Sbjct: 762 FPQAANVHLSAVEHGHGIVFLHAVEEGPANQSYGLQVAQLAGVPAPVIRAARKHLAHLEQ 821 Query: 842 LYHHN---QKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 Q D+ P + +E + +E++ L+ D++ P AL LY ++ Sbjct: 822 QSAAQATPQLDLFAAQPIVDEQECNQPPAAAPHPALERLLALDPDDLKPRDALDLLYELR 881 Query: 899 A 899 A Sbjct: 882 A 882 >gi|240950045|ref|ZP_04754351.1| DNA mismatch repair protein [Actinobacillus minor NM305] gi|240295463|gb|EER46211.1| DNA mismatch repair protein [Actinobacillus minor NM305] Length = 864 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 311/890 (34%), Positives = 492/890 (55%), Gaps = 37/890 (4%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 + + L + TPMM+QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG Sbjct: 1 MTQELSNHTPMMQQYLQLKAQNPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGASA 60 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G+ IPM GVP H Y+ KL+ +G +AICEQ+ P +K V R VVR+VTPG Sbjct: 61 GEPIPMAGVPYHAVEGYLAKLVALGESVAICEQVGDPTT-----SKGPVERKVVRIVTPG 115 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPRE 196 T++++ LL N + A+ + +AIA +D+++G F IS N + L +++ R+ P E Sbjct: 116 TVSDEALLPERQDNLVAAIYEEKGTFAIATLDMTSGRFLISELPNKEALAAELQRVSPAE 175 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 I+++E + ++A+ + ++ L +P F+ + + + ++ FG + V Sbjct: 176 ILYAE-DFAYAQILNNYKGLRR----RPVWEFELVTAIQLLNRQFGTQSLAGFGVEKAVV 230 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA + Y ++TQ P I T+ +D+A R NLE+ + L+G E +L Sbjct: 231 ALCAAGCVLHYAQETQRTALPHINSIHLAQNHDTVLLDAATRRNLELTQNLAGGTENTLA 290 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D +T G RL I P+ K+ R ++I+ +N I P+Q +L++ D+ Sbjct: 291 AVLDKCVTPMGSRLLKRWIHQPIRQMKKLEERQETIDALQKNG-QIQPLQSLLQNVGDME 349 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R L+R+ + P+D+ +R + +I+ L L + ++ + L L Sbjct: 350 RILARVALRSARPRDLTRLRSALGQIPDIVQS--SQHLTASLDQLLHQIGDFSE-LHDLL 406 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + ++ P RDGG + G +A LDE R L D + + + +L+ + E T I LKI Sbjct: 407 ERAIIENPPQLIRDGGVIAAGYNAELDEWRDLADGATQYLENLEQRERETTGIDTLKIGF 466 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+I+++ A ++ ++ RQT+ N R+ EL E+++ A ++L Sbjct: 467 NAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKTYEDKVLKAKGASL 520 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E + +E L + ++ + L A+ ++ +D+ LA A+ Y +P +K Sbjct: 521 ALEKQLYEALFDFMMPRLGELQLAAMALSELDVLTNLAERAENLGYVKPTFSPQRLINIK 580 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ LK+ PFIAN L+ L ++TGPNMGGKST++RQ ALI + Sbjct: 581 GGRHPVVEQVLKE----PFIANPVYLN-----GQRHLLVVTGPNMGGKSTYMRQIALITL 631 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MA +GS+VPA A IGIVD++F+R+G++D+LASGRSTFMVEM E A+IL+QAT S V++ Sbjct: 632 MAYIGSFVPAESAEIGIVDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATEYSLVLI 691 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA E+L + ++ L ATH+ ELT L LK N L + Sbjct: 692 DEIGRGTSTYDGLSLAWACAEWLAKKSQSLTLFATHYFELTSLPNLLKGVANVHLDAREH 751 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE------KLYHHNQKD 849 N+ I+F+H V G A SYG+ V LAG+P VI A L E K+ N + Sbjct: 752 NDTIVFMHSVQEGAASKSYGLAVAALAGVPKAVIQLAKQRLAHLETISEQTKVGAENPQA 811 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 L+ ++Q L + + + ++ DE++P AL+ LY +K Sbjct: 812 DLLFSGDLQNNAEIPPLVAVESEVEKALAEVDPDELTPKQALEVLYRLKG 861 >gi|331009314|gb|EGH89370.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 859 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 314/887 (35%), Positives = 489/887 (55%), Gaps = 46/887 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L S TPMM+QY ++K+ + D L+FYRMGDFYE+F++DA A++ L ITLT RG+ G+ Sbjct: 7 DLSSHTPMMQQYWKLKNQHLDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQS 66 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCG+P H A Y+ KL+K+G + ICEQI P +K V R VVR++TPGT++ Sbjct: 67 IPMCGIPYHAAEGYLAKLVKLGESVVICEQIGDPAT-----SKGPVDRQVVRIITPGTIS 121 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIF 199 ++ LL N + AV + +A +DI++G F + + L++++ RI+P E++ Sbjct: 122 DEALLDERRDNLIAAVLGDERLFGLAVLDITSGNFSVLEIKGWENLLAELERINPVELLI 181 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 + + L A + F+ + + ++ + FG + Sbjct: 182 PDDW-----PQGLPAEKRRGARRRAPWDFERDSAHKSLCQQFSTQDLKGFGCENLTLAIG 236 Query: 260 AAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA + SY K+TQ P + E + T+ +D+A+R NLE+ LSG R+ +L + Sbjct: 237 AAGCLLSYAKETQRTALPHLRSLRHERLDDTVILDAASRRNLELDTNLSGGRDNTLQSVM 296 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D T G RL + PL D T + R SI F++ N +Q LK D+ R L Sbjct: 297 DRCQTAMGTRLLTRWLNRPLRDLTILQARQTSITCFLERYRFEN-LQPQLKEIGDIERIL 355 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 +R+ + P+D+A +RD + S + L + + L+ + P+ L L Sbjct: 356 ARIGLRNARPRDLARLRDAL-SALPELQQAMTDLEAPHLQQLAQTASIYPE-LADLLQRA 413 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + D+ P RDGG L+ G DA LD+ +SL + + + + L+ + T + NLK+ +N Sbjct: 414 IIDNPPAVIRDGGVLKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLANLKVGYNRV 473 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GYFIE+ S A D +I RQT+ RF T EL + E++ +A + AL E Sbjct: 474 HGYFIELPSKQAEQAPAD------YIRRQTLKGAERFITPELKEFEDKALSAKSRALARE 527 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 +E L +I L + + +A +D+ LA A + P ++ GR Sbjct: 528 KMLYEALLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLDLNCPRFVAEPCMRIEQGR 587 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ L S PF+AND L +S ++ ++TGPNMGGKST++RQ ALIV++A Sbjct: 588 HPVVEQVL----STPFVANDLALD-----DSTRMLVITGPNMGGKSTYMRQTALIVLLAH 638 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V++DE+ Sbjct: 639 IGSFVPAASCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEV 698 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGLS+AWA E L + R L ATH+ ELT L +S N L ++ NE Sbjct: 699 GRGTSTFDGLSLAWAAAECLAQL-RAYTLFATHYFELTVLPESEPLVSNVHLNATEHNER 757 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 I+FLH+V+PG A SYG+ V +LAG+P VISRA + L+ E L + + + Sbjct: 758 IVFLHRVLPGPASQSYGLAVAQLAGVPGKVISRAKEHLQRLET--------TSLPHEQPR 809 Query: 859 TKESKNNLSKNDKLF-------VEKIKCLNLDEMSPLTALKTLYAVK 898 K K + + +F ++++ + +D+M+P AL LY ++ Sbjct: 810 AKPGKPAVPQQSDMFASLPHPVLDELSKVKVDDMTPRQALDLLYTLQ 856 >gi|254428083|ref|ZP_05041790.1| DNA mismatch repair protein MutS [Alcanivorax sp. DG881] gi|196194252|gb|EDX89211.1| DNA mismatch repair protein MutS [Alcanivorax sp. DG881] Length = 888 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 316/891 (35%), Positives = 488/891 (54%), Gaps = 47/891 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L TPMM+QY+ IK+ +PD LVFYRMGDFYELFF DA A+R L ITLT+RG+ GK Sbjct: 31 DLSQHTPMMQQYLGIKAEHPDQLVFYRMGDFYELFFGDAQKAARLLDITLTQRGQSAGKP 90 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM G+P H A +Y+ +L+K+G +AI EQI P AK V R VVR+VTPGT++ Sbjct: 91 IPMAGIPYHAAENYLARLVKLGESVAIAEQIGDPALAK-----GPVERKVVRIVTPGTVS 145 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIF 199 ++ LL N L AV ++ A +D++ G F ++ D+L + + R P E++ Sbjct: 146 DEALLEERRDNLLCAVFDHNNQYGCASLDLAAGRFVVTQVEGADQLQALLERWSPAELLL 205 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 SE+ H E G +P FD + ++ + + + FG + V A Sbjct: 206 SEE---HGLLGRWAERPGTRK--RPGWEFDEDAARRQLCQQFQVQDLAGFGEPTAVAVAA 260 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A A + Y K+TQ P I E + +D+A R NLE+ TL G + +L +D Sbjct: 261 AGALLGYAKETQRGELPHITGLAVESFDDAVAMDAATRRNLELTETLDGQEQHTLAWVLD 320 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL + PL + T + R D I+ Q + +L D+ R L Sbjct: 321 STQTAMGARLLKRWVHQPLRNRTTLTQRQDQIDALRQG-WCFESARDVLNDIGDMERILG 379 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ + P+D+ + +++ ++ D EL +E++ + P +E L + + Sbjct: 380 RVALRSARPRDLTRLHASLKALPPLIGTLPAADCFFEL---IERIGQFPNQVE-LLGTAV 435 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 ++ P RDGG + G + LDE RS+ + + I+ ++ + E T++ L++K+N Sbjct: 436 IENPPMLIRDGGVIAPGYNEELDELRSISENAGAILVDIETRERERTQLSTLRVKYNRVH 495 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IE++ + D + RQT+ N RF T EL + E++ +A++ AL +E Sbjct: 496 GYYIELSRRESDQAPAD------YQRRQTLKNAERFITPELKEFEDKALSASSKALALEK 549 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP-IIDNSTNFIVKDGR 618 +E L + +L ++ +A +D+ ALA A+ N+ RP ++D+ + DGR Sbjct: 550 RLYEALLENVAADLHALQRSAAAVAELDVLAALAERAEALNWVRPQLVDDDAIIEIVDGR 609 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ L F+ N L ++ ++ ++TGPNMGGKST++RQ ALI ++A Sbjct: 610 HPVVEQVLDDA----FVPNSLHLD-----DARRMVIITGPNMGGKSTYMRQTALIALLAH 660 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS VPA+ A IG +D++F+R+GS+D+LA GRSTFMVEM ETA+ILN AT QS V++DEI Sbjct: 661 LGSCVPAASARIGSLDRIFTRIGSSDDLAGGRSTFMVEMSETANILNNATAQSLVLMDEI 720 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGLS+AWA E+L + L ATH+ ELT L + L +NA L S+ + Sbjct: 721 GRGTSTFDGLSLAWAAAEHLARNLKAFTLFATHYFELTQLPEQLPGIYNAHLTASEHDNR 780 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 I+FLH+V G A SYG+QV +LAG+P +VI A + L+ E+ K + + Sbjct: 781 IVFLHRVQEGPASRSYGLQVAQLAGVPASVIHEAGNKLRELEE-----GKPLAASASAVN 835 Query: 859 TKESKNNLS----KNDKLFVE------KIKCLNLDEMSPLTALKTLYAVKA 899 T + S LF E +K L+ D+++P AL+ LY ++ Sbjct: 836 TTPASTTPSAATPAQASLFSEPSAVEHALKELDPDDLTPKQALEALYKLRG 886 >gi|270308389|ref|YP_003330447.1| DNA mismatch repair protein [Dehalococcoides sp. VS] gi|270154281|gb|ACZ62119.1| DNA mismatch repair protein [Dehalococcoides sp. VS] Length = 858 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 311/890 (34%), Positives = 509/890 (57%), Gaps = 41/890 (4%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 +++ TP+ +QY++IK P+++VF+R+GDFYE F +DA +A+R L I LT R G + Sbjct: 1 MENITPLRKQYLDIKKNYPEAIVFFRLGDFYETFEEDARIAARELEIVLTSREMGKGLKV 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 P+ G+P H ++Y+ +LI G+++AICEQ+ P E K LV+R V RLVTPGT+ E Sbjct: 61 PLAGIPYHALDNYLSRLINRGYKVAICEQVTKPGE-----TKGLVQRQVTRLVTPGTVVE 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 LL +N+L+++ +A+ DIST F + + + L ++I R++P EII Sbjct: 116 PNLLDSKQNNFLLSLYLTGDSCGLAFADISTSEFGCTQLDINGLEAEINRLNPAEII--- 172 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAA 260 + ++ +L L +F+ ++ R+ ++ + +G + + +AA Sbjct: 173 --MPKSQSLNLPPHLKATISKLDGYYFEADVARERLLKHFECQNLSAYGCENLPLAVSAA 230 Query: 261 AAAISYIKKTQMVNKPTIGYPER---EDIQSTLFIDSAARSNLEILRTLSG-SREQSLLK 316 A ++Y++ TQ K ++ ER I + IDS SNLEI R+ G S + SLL Sbjct: 231 GALLNYLEGTQ---KSSLKQLERLSVYTISDYMQIDSHTLSNLEIFRSSGGNSLKGSLLG 287 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D + T GGRL + + PL I RL ++++F + + + K L D+ R Sbjct: 288 VLDQTKTAMGGRLLRKFLGQPLLRQEDIEKRLSAVDYFFEESLARASLAKSLGQIADMER 347 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 +R++ PK++ ++ + ++ ++ P L + LK LP+ L+ ++ Sbjct: 348 IANRIRQKTILPKELISLKHSLEI-VSAIHRQFGLMPPPRLVYFLNGLKPLPEMLD-IIN 405 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 +SDD P+ +G +R G + +D+ SL ++ ++ ++ + E+T IK+LK+ +N Sbjct: 406 EAISDDPPSTLGEGKVIRSGFNPEMDKLCSLAGDARTFLSQMEAREREQTGIKSLKLGYN 465 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+IEV++++ + + ++ +I +QT+ N RF T EL + EN I NA L Sbjct: 466 RVFGYYIEVSNANLADIPQN------YIRKQTLVNAERFITPELKEYENLILNAKERLLE 519 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E +E + N + L + + V+A +D+ A A +A Y RP+ + + Sbjct: 520 METGLYEQVLNQLGGFYSVLLSNAAVLASLDVLSAFAEVAVRNGYVRPVFHPENSLAIHR 579 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE+ L S F+AND LS + ++ +LTGPNM GKST+L+Q ALIV+M Sbjct: 580 GRHPMVEQGLGHGS---FVANDISLSAED----CQIIILTGPNMAGKSTYLKQTALIVLM 632 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+GSYVPA A + + D++FSR+G+ ++L++G+STFMVEM+ETASILN AT++S +ILD Sbjct: 633 AQIGSYVPAETAELCLTDRIFSRIGAREDLSAGQSTFMVEMVETASILNSATSRSLLILD 692 Query: 737 EIGRGTATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 EIGRGT+T DGL+IA A +EY+H + + L ATH+HEL +++ L R N + VS+ Sbjct: 693 EIGRGTSTYDGLAIAQAVVEYIHSQPSLNAKTLFATHYHELVEMANYLPRVKNYNIAVSE 752 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 ++FLHK++PG D SYGI V KLAG+P VI RAY++L E K+ R Sbjct: 753 DRGEVVFLHKIVPGGVDKSYGIHVAKLAGMPKWVIKRAYEVLTELENPAKKQPKN-RTCQ 811 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTLEK 904 P++ K +++ + +IK L ++ ++PL AL LY +K EK Sbjct: 812 PQL-----KLPMTEQTSILSAEIKELEIESLTPLAALNKLYELKKKAEEK 856 >gi|262379625|ref|ZP_06072781.1| DNA mismatch repair protein MutS [Acinetobacter radioresistens SH164] gi|262299082|gb|EEY86995.1| DNA mismatch repair protein MutS [Acinetobacter radioresistens SH164] Length = 883 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 332/895 (37%), Positives = 502/895 (56%), Gaps = 47/895 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L TPMM+QY+++K + +L+FYRMGDFYELFFDDA A++ LGITLT RGK G Sbjct: 9 DLSPHTPMMQQYLKVKMQHNHALLFYRMGDFYELFFDDAHKAAKLLGITLTHRGKANGNP 68 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM GVP H+A Y+ +L+K G +AICEQ+ + K V R VVR++TPGTLT Sbjct: 69 IPMAGVPYHSAEGYLARLVKAGETVAICEQV------GEVTGKGPVERKVVRILTPGTLT 122 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH--DRLISDIMRIDPREII 198 +D LLS S+ L+A+ + + IA +D+S GIFK+ + ++L ++ R+ P EI+ Sbjct: 123 DDALLSSYQSSNLVALCFQQNQVGIALLDLSAGIFKVQQQEYRAEQLAIELSRLMPSEIL 182 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 E + + + + + +PNV F+ + ++ + D + ++T+ FG + K Sbjct: 183 VDEDLVDANIIEQIKKQIDCPVTKRPNVDFNLNNAQKTLCDQFAVSTLSGFGIDHLPLAK 242 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AAAA I Y K+TQ P I E + +D R NLEI+ L SL Sbjct: 243 AAAAALIHYAKETQKTALPHIRSIRLEQSSDFIALDPVTRRNLEIIDPLF-EHGTSLFHL 301 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 I+ T G RL + + P+ D+ + RLD+I ++ P++ +LK D+ R Sbjct: 302 INECQTAMGSRLLSRTLMQPIRDTVILEARLDAIEQLVKG-YHEAPVRLVLKEISDIERV 360 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEK-LKKLPQSL----- 431 LSR+ +G P+D+ +R S I FL++ L + K L +L Q L Sbjct: 361 LSRIALGTARPRDLVQLRQAC-SQIP----FLRHALQPVIDSKKSKMLHQLYQELGDFKV 415 Query: 432 -EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 + LSS + ++ P RDG + +G D LDE R +RD + + + L+++ E+T I Sbjct: 416 LSERLSSAIVENPPVLLRDGNVIAEGFDHELDELRKIRDHAGQFLIDLEIQEREQTGIST 475 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LKI +N GY+IE+T + A ++ + +I RQT+ N R+ T EL E+++ ++ Sbjct: 476 LKIGYNRVSGYYIELTRAQAE------QAPEHYIRRQTLKNAERYITPELKSFEDKVLSS 529 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 + AL E FE+L + + SL S IA ID+ A A+ +++ RP Sbjct: 530 ESRALAREKLLFELLLEELRQDIASLQVMSSAIAQIDLLANFAYQARLKSWNRPEFSPEV 589 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 + GRHP+VE S P+ ND L D N ++ ++TGPNMGGKSTF+RQ Sbjct: 590 GIKIIAGRHPVVESL----SKTPYTPNDTSL----DFNH-RMAIITGPNMGGKSTFMRQT 640 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI ++A GS+VPA A +G +D++F+R+GSAD+L+SG+STFMVEM ET+ IL+ AT+Q Sbjct: 641 ALISLLAYCGSFVPAQSARLGPIDRIFTRIGSADDLSSGKSTFMVEMTETSQILHHATSQ 700 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V++DE+GRGT+T DGLS+AWA + L + +C L ATH+ ELT+L + N + Sbjct: 701 SLVLMDEVGRGTSTYDGLSLAWACVLDLTKRIKCLCLFATHYFELTELGQE-AGIDNYHV 759 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN---- 846 + N +I LHKV PG A S+G+QV KLAG+P +VI A LK EK + Sbjct: 760 TAKEMNGNLILLHKVQPGPASQSHGLQVAKLAGIPASVIKEAQKRLKILEKQQQQHLQTV 819 Query: 847 -QKDMRLYYPEIQTK--ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 Q D+ P + + E+ + K + +E ++ L++D +SP AL LY +K Sbjct: 820 VQNDLFDVIPLVVSPVTETITEVEKTSPV-LESLEQLDIDSLSPREALAQLYKLK 873 >gi|296127255|ref|YP_003634507.1| DNA mismatch repair protein MutS [Brachyspira murdochii DSM 12563] gi|296019071|gb|ADG72308.1| DNA mismatch repair protein MutS [Brachyspira murdochii DSM 12563] Length = 894 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 337/916 (36%), Positives = 521/916 (56%), Gaps = 81/916 (8%) Query: 17 DLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKH 76 D +E + TPMMRQY EIK DS++ +RMGDFYE+FFDDA + S LG+TLTKR Sbjct: 9 DNKEETQKLTPMMRQYKEIKDKYNDSILLFRMGDFYEVFFDDAKVVSDILGLTLTKRA-- 66 Query: 77 LGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTP 136 ++PM GVP H ++Y+ KL+K G +IAIC+Q+E P AK +V+R V +++TP Sbjct: 67 ---NVPMAGVPYHAIDNYLSKLVKSGMKIAICDQMEDPKTAK-----GIVKREVTQVITP 118 Query: 137 GTLTEDQLLSPTDSNYLMAVARIRTE--WAIAWIDISTGIFKISTSNHD----------- 183 GT++E++ L +NYL ++ ++E A++ DISTG S N + Sbjct: 119 GTISENKYLESKSNNYLASIIVSKSEKNAALSICDISTGELYASEINSNLENQNEAVKEI 178 Query: 184 --RLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADY 240 LI +I+R P+EI+ E K + N+ + N ++S + + ++ Sbjct: 179 INELIEEIIRFSPKEIMTIESVSESIIIKEIKNKFSNIFYSTTANYTAEYSYAYKTLTNH 238 Query: 241 YNITTVDTFGSFSQVEK-----TAAAAAISYIK---KTQMVNKPTIGYPEREDIQSTLFI 292 + ++ +FG +E+ + + I YI+ KT + + I R+D ++ + Sbjct: 239 FKTVSLKSFG----IEEKPLLISLLGSTIFYIQELSKTSLEHISNIKLYNRKD---SMTL 291 Query: 293 DSAARSNLEILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSI 351 D A ++LEIL T+ + + + +L TID + T G R I PL + IN RLD++ Sbjct: 292 DYATIASLEILETIRNDNNKMTLFDTIDRTKTSMGARYLKRIIVEPLLNINDINKRLDNV 351 Query: 352 NFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN 411 FF +N + I+ +L+ D+ R S+L + R PK++ ++ + + + ++ N Sbjct: 352 EFFYKNQKFMYKIRDLLQDIGDIERLASKLALSRINPKELVSLKRFLVTSLEVITELAMN 411 Query: 412 DLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQS 471 + + V +K + +E+ + ++ +G ++D D +L + R + Sbjct: 412 NFEDVNFEEVNDIKIITDLIERAIL----EEPKIVINEGDIIKDDYDETLKKYNEARREG 467 Query: 472 KRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSN 531 + IA L+ Y +T I NLKI++NN +GY+IEVT ++AS + D FI RQT+ Sbjct: 468 RSWIAELEHNYKLDTGINNLKIRYNNVIGYYIEVTKANASSVPSD------FIKRQTLIG 521 Query: 532 LTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIA 591 R+TT +L++ EN I A + +E + F + N E S+ ++VI+IID+ + Sbjct: 522 SERYTTSKLMEYENIINEANEKSYALEYDIFINVRNKTNEYLNSILKMARVISIIDVYSS 581 Query: 592 LAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGK 651 LA LAKE NY +PII + +K+GRHP+VE LK +S FI ND L N+ Sbjct: 582 LACLAKEDNYVKPIITDDGIIDIKEGRHPVVEVNLKTES---FIPNDTYLDSKNEH---- 634 Query: 652 LWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRS 711 + ++TGPNM GKST+LRQ ALIV++AQ+GS+VPA+ A I IVD++F+RVG++DN+A G S Sbjct: 635 MLIITGPNMSGKSTYLRQTALIVLLAQIGSFVPAASAKISIVDRIFTRVGASDNIARGES 694 Query: 712 TFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYL-HETN-RCRGLLA 769 TF+VEM ETA ILN TN+S VI+DEIGRGT+T DGLSIAWA +EYL HE N + + L A Sbjct: 695 TFLVEMNETAYILNHCTNKSLVIMDEIGRGTSTYDGLSIAWAIVEYLVHEENKKAKTLFA 754 Query: 770 THFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVI 829 TH+HELT L + L+ N + V + + IIF+ KV G A SYGI K+AG PN VI Sbjct: 755 THYHELTML-EDLEGVKNYKVLVEEYKDEIIFMKKVTEGAAQSSYGIYAAKIAGAPNKVI 813 Query: 830 SRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNNL-----SKNDKLFVEKI------- 877 RA +ILK E + +++ E+ T++SK+ L + ND + EK Sbjct: 814 RRASEILKKLE-----TEAGIQVENIELNTQKSKDILPFYDNTNNDYIIEEKTKESEIEK 868 Query: 878 --KCLNLDEMSPLTAL 891 K LN++ ++P+ A+ Sbjct: 869 EIKELNINNITPIDAI 884 >gi|269926487|ref|YP_003323110.1| DNA mismatch repair protein MutS [Thermobaculum terrenum ATCC BAA-798] gi|269790147|gb|ACZ42288.1| DNA mismatch repair protein MutS [Thermobaculum terrenum ATCC BAA-798] Length = 862 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 326/887 (36%), Positives = 491/887 (55%), Gaps = 52/887 (5%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 STP +QY+ IK PD+++F+R+GDFYE F +DA + S L I LT R GK IPM Sbjct: 2 STPARQQYLRIKQQYPDAILFFRLGDFYETFDEDAKIVSSELDIVLTSREVR-GKKIPMA 60 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H A YI KLI GH++AIC+QI P K+LV R V R++TPGT+ L Sbjct: 61 GVPYHAAEGYIAKLIANGHKVAICDQIGEP------DGKNLVERKVTRVLTPGTVDHPSL 114 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIF---KISTSNH-DRLISDIMRIDPREIIFS 200 + +NYLMA+ R +A+ D+STG F +I+ + D+L +I RI P E++ S Sbjct: 115 IEAQRNNYLMALCFSRGRVGLAFADVSTGDFYATEITGEDRLDKLRDEITRIQPSEVLVS 174 Query: 201 E--KELSHAEYKSLFETLGNVAVAQPNVF----FDHSISESRIADYYNITTVDTFGSFSQ 254 E ++ +E + G+ A Q V + ++ + + +++ FG S Sbjct: 175 EGPDKVHTSEEHVWMKQSGHPA--QITVLESWKWKTDVARDSVLSLTDAQSLEAFGLDSM 232 Query: 255 -VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 V +A A + YI T T+ P + + + +D R NLE++ + G + S Sbjct: 233 PVALKSAGALVQYISDTNPAALSTLRPPSTYFLSNFMPLDDRTRRNLELIESTRGDKSLS 292 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D++ T G R+ I PL I RL+ + F+ + I++ LK D Sbjct: 293 LLAVLDHTSTAMGARMLRNWINQPLISKESIENRLNRVQEFVAHSEARERIREALKQVSD 352 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R +RL P+++ + + ++ + + ++ +L+ ++ Q + Sbjct: 353 LERLANRLVQKTITPRELRSLALSLEKIPELVQILQQCNM--QLQVSIHNF----QHIVD 406 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + S L DD P + G +R+G LD RS +K+ IASL+ K E T IKNL+I Sbjct: 407 LILSALVDDPPAVRGSGTIIREGYSQELDRLRSASTNAKQWIASLERKEREATGIKNLRI 466 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GY+IEVT+S ++ DR+I +QT+ RF T EL + E+ I N+ Sbjct: 467 GYNKVFGYYIEVTNSFKHLVP------DRYIRKQTLVGAERFITPELKEYESLILNSQTE 520 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 A IE + + L I ++ + + ++ IA ID ++LA A Y RPI+ Sbjct: 521 AETIEEQLLDELITRIAGEAGKIFSTARQIAEIDCYVSLAEAAVRHQYVRPIVSEDDVIE 580 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +K GRHP+VE ++S+ F+ ND L D+ + ++ +LTGPNM GKST+LRQ ALI Sbjct: 581 IKGGRHPVVE----LRASEGFVPNDAFL----DQETHQVLILTGPNMAGKSTYLRQVALI 632 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MAQ+GS+VPA A IGIVD++F+RVG+ D++ASG+STFMVEM ETA IL T +S V Sbjct: 633 TLMAQIGSFVPADSARIGIVDRIFTRVGAQDDIASGQSTFMVEMTETAYILAHCTPKSLV 692 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRG--LLATHFHELTDLSKSLKRFHNATLQ 791 ILDEIGRGT+T DG++IA A +EYLH R R L ATH+HELT L + L R N ++ Sbjct: 693 ILDEIGRGTSTYDGMAIAQAVVEYLHNNTRTRARTLFATHYHELTSLEEFLPRVKNFRME 752 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR 851 V + ++FL KV+PG AD SYGI V KLAG+P +VI RA ++LK E ++D Sbjct: 753 VLEEGNDVVFLRKVVPGGADKSYGIHVAKLAGIPKSVIRRAQELLKELEAQLKKEEEDDN 812 Query: 852 LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P++ L+ +D L E + L+++ M+P+ AL L+ ++ Sbjct: 813 ---PQL------TFLNPDDGLLQE-LADLDVESMTPVEALTKLFEIR 849 >gi|330975362|gb|EGH75428.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 859 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 315/889 (35%), Positives = 491/889 (55%), Gaps = 50/889 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L + TPMM+QY ++K+ + D L+FYRMGDFYE+F++DA A++ L ITLT RG+ G+ Sbjct: 7 DLSAHTPMMQQYWKLKNQHLDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQS 66 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCG+P H A Y+ KL+K+G + ICEQI P +K V R VVR++TPGT++ Sbjct: 67 IPMCGIPYHAAEGYLAKLVKLGESVVICEQIGDPATSK-----GPVDRQVVRIITPGTIS 121 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIF 199 ++ LL N + AV + +A +DI++G F + + L++++ RI+P E++ Sbjct: 122 DEALLDERRDNLIAAVLGDERLFGLAVLDITSGNFSVLEIKGWENLLAELERINPVELLI 181 Query: 200 SE--KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 + + AE + G+ A + F+ + + + + FG + Sbjct: 182 PDDWPQGLPAEKRR-----GSRRRAPWD--FERDSAHKSLCQQFATQDLKGFGCENLTLA 234 Query: 258 TAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 AA + SY K+TQ P + E + T+ +D+A+R NLE+ LSG R+ +L Sbjct: 235 IGAAGCLLSYAKETQRTALPHLRSLRHERLDDTVILDAASRRNLELDTNLSGGRDNTLQS 294 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D T G RL + PL D T + R SI F++ N +Q LK D+ R Sbjct: 295 VMDRCQTAMGTRLLTRWLNRPLRDLTILQARQTSITCFLERYRFEN-LQPQLKEIGDIER 353 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 L+R+ + P+D+A +RD + + + D P L+ + P+ L L Sbjct: 354 ILARIGLRNARPRDLARLRDALSALPELQQAMTDLDAPH-LQQLAQTASTYPE-LADLLQ 411 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + D+ P RDGG L+ G DA LD+ +SL + + + + L+ + T + NLK+ +N Sbjct: 412 RAIIDNPPAVIRDGGVLKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLGNLKVGYN 471 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GYFIE+ S A D +I RQT+ RF T EL + E++ +A + AL Sbjct: 472 RVHGYFIELPSKQAEQAPAD------YIRRQTLKGAERFITPELKEFEDKALSAKSRALA 525 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 E +E L +I L + + +A +D+ LA A + P ++ Sbjct: 526 REKMLYETLLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLDLNCPRFVAEPCMRIEQ 585 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE+ L S PF+AND L +S ++ ++TGPNMGGKST++RQ ALIV++ Sbjct: 586 GRHPVVEQVL----STPFVANDLALD-----DSTRMLVITGPNMGGKSTYMRQTALIVLL 636 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A +GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V++D Sbjct: 637 AHIGSFVPAASCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMD 696 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 E+GRGT+T DGLS+AWA E L + R L ATH+ ELT L +S N L ++ N Sbjct: 697 EVGRGTSTFDGLSLAWAAAECLAQL-RAYTLFATHYFELTVLPESEPLVTNVHLNATEHN 755 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 E I+FLH+V+PG A SYG+ V +LAG+P VISRA + L+ E L + + Sbjct: 756 ERIVFLHRVLPGPASQSYGLAVAQLAGVPGKVISRAKEHLQRLET--------TSLPHEQ 807 Query: 857 IQTKESKNNLSKNDKLF-------VEKIKCLNLDEMSPLTALKTLYAVK 898 + K K + + +F ++++ + +D+M+P AL LY ++ Sbjct: 808 PRAKPGKPAVPQQSDMFASLPHPVLDELSKVKVDDMTPRQALDLLYTLQ 856 >gi|302874906|ref|YP_003843539.1| DNA mismatch repair protein MutS [Clostridium cellulovorans 743B] gi|307690474|ref|ZP_07632920.1| DNA mismatch repair protein MutS [Clostridium cellulovorans 743B] gi|302577763|gb|ADL51775.1| DNA mismatch repair protein MutS [Clostridium cellulovorans 743B] Length = 901 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 313/827 (37%), Positives = 477/827 (57%), Gaps = 51/827 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY++IK NP ++F+R+GDFYE+FF+DA +ASR L + LT R L + PMCG Sbjct: 4 TPMMQQYLQIKEENPQCILFFRLGDFYEMFFEDAKIASRELELVLTGRDCGLEERAPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H AN YI KL+ G+++ ICEQ+E P AK +V+R +V++ TPGT E L Sbjct: 64 IPYHAANVYISKLVSRGYKVGICEQLEDPSVAK-----GIVKRGIVKVYTPGTYIEGNFL 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD--RLISDIMRIDP--REIIFSE 201 +NY+M++ ++ IA+ DISTG F S N+D L+S+I + +P I Sbjct: 119 EDRKNNYIMSIYFSVDKFYIAFSDISTGEFSSSYFNYDVPMLLSEISKYNPSEIIIHEEI 178 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 KE A K F +V N+ F S + + Y+ +D EK Sbjct: 179 KEEVIAAIKERF----SVTFTNENLDFYMSGYKENVESYFKDYNID--------EKPIGL 226 Query: 262 A-----AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLL 315 A I YIK+TQ + I +I+ L ID R NLE+ T +++ SLL Sbjct: 227 AYSINSIIRYIKETQKADLSHINTLNIYEIEDFLSIDINTRKNLELTETQRDKTKKGSLL 286 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T G R + I PL + I RL+++ + N L ++ +LK D+ Sbjct: 287 WVLDKTSTAMGARELRKWIDQPLINKNAIELRLEAVAELVSNLSLQEELKVLLKDIYDIE 346 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLK---NDLPEELRGAVEKLKKLPQSLE 432 R + ++ K++ I+ I S I + LK + +E+ +++L + + LE Sbjct: 347 RLVGKVSSKSVNAKELLSIKSSI-SKIPAIKTLLKQCTSSYLQEIYNNLDELSDIEELLE 405 Query: 433 KTLSSMLSDDLPTFK-RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 K++ D+ P ++G +++G ++ +D+ + + K ++ L+ + E T IK+L Sbjct: 406 KSI-----DESPAITLKEGNLIKEGYNSEIDQLKVAKKDGKLWLSELEAREKETTGIKSL 460 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 K+ N GY+IEVT ++ +++ + R+I +QT++N R+ T EL +E+ I A Sbjct: 461 KVSFNKVFGYYIEVTKTNLNMV-----PEHRYIRKQTLANCERYITDELKKMEDIILGAE 515 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + +E + F + ++++ + ++++IA ID +LAI+A E NY RP ID S Sbjct: 516 EKLISLEYDVFVEVRELVLKEVLRMQQSARLIATIDCLNSLAIVALENNYTRPAIDVSGI 575 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 +K+GRHP+VEK L + FI+N L D+ +L ++TGPNMGGKST++RQ A Sbjct: 576 INIKEGRHPVVEKLL---PTGNFISNSISL----DREENQLLIITGPNMGGKSTYMRQCA 628 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LI IMAQ+GS+VPA A IGI DK+F+R+G++D+LA G+STFMVEM E A+ILN ATN S Sbjct: 629 LITIMAQIGSFVPAESATIGICDKVFTRIGASDDLAGGKSTFMVEMWEVANILNNATNNS 688 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYL--HETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 V+LDE+GRGT+T DGLSIAWA IE+L ++ +C+ L ATH+HELT L N + Sbjct: 689 LVLLDEVGRGTSTYDGLSIAWAVIEFLTTNKNVKCKTLFATHYHELTKLEAEFSGVKNYS 748 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 + V E IIFLHK++ G AD SYGI+V +LAGLP V+ R+ +IL Sbjct: 749 VGVKKIGEEIIFLHKIVKGAADESYGIEVARLAGLPQAVLDRSKEIL 795 >gi|153839201|ref|ZP_01991868.1| DNA mismatch repair protein MutS [Vibrio parahaemolyticus AQ3810] gi|149747266|gb|EDM58252.1| DNA mismatch repair protein MutS [Vibrio parahaemolyticus AQ3810] Length = 853 Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust. Identities = 310/887 (34%), Positives = 485/887 (54%), Gaps = 52/887 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 + TPMM+QY+++K+ NP+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IP Sbjct: 5 QKHTPMMQQYLKLKAENPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGSSAGEPIP 64 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+T++ Sbjct: 65 MAGVPFHAVEGYLAKLVQLGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTVTDE 119 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSE 201 LLS N + A+ ++ A +D+++G F+++ + +++++ R PRE++F E Sbjct: 120 ALLSERLDNLIAAIYHHNGKFGYATLDVTSGRFQLTEPETEESMMAELQRTAPRELLFPE 179 Query: 202 KELSHAEYKSLFETLG-----NVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 FE + N +P F+ ++ ++ + + FG + + Sbjct: 180 D----------FEPVHLMSNRNGNRRRPVWEFELDTAKQQLNQQFGTRDLVGFGVEHASL 229 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA I Y+K TQ P I + ++ +D+A R NLEI + L+G + +L Sbjct: 230 GLCAAGCLIQYVKDTQRTALPHIRSLTFDRQDHSVILDAATRRNLEITQNLAGGTDNTLA 289 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D+ T G R+ + P+ +N RLD+I I++ L +Q LK D+ Sbjct: 290 AVLDHCSTPMGSRMLKRWLHQPMRCIDTLNNRLDAIGE-IKDQGLFTDLQPTLKQIGDIE 348 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 R L+RL + P+D+A +R ++ + L L + +L + ++ + LE+ Sbjct: 349 RILARLALRSARPRDMARLRHAMQQLPELESLTASLTHPYLVKLAQYAAPIDEVCELLER 408 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + ++ P RDGG + +G + LDE R L D + + L+ E I LK+ Sbjct: 409 AIK----ENPPVVIRDGGVIAEGYNEELDEWRKLADGATEYLEKLEADERERHGIDTLKV 464 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N G+FI+V+ + ++ ++ RQT+ N R+ EL + E+++ N+ + Sbjct: 465 GYNAVHGFFIQVSRGQSHLVPP------HYVRRQTLKNAERYIIPELKEHEDKVLNSKSK 518 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E + +E L + ++ E + N + ++ +D+ LA A +YCRP + Sbjct: 519 ALALEKKLWEELFDLLMPHLEQMQNLASAVSQMDVLQNLAERADSLDYCRPTLVKDAGIH 578 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 ++ GRHP+VE Q +S PFIAN +LS S K+ ++TGPNMGGKST++RQ ALI Sbjct: 579 IQAGRHPVVE----QVTSDPFIANPIELS-----PSRKMLIITGPNMGGKSTYMRQTALI 629 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V Sbjct: 630 ALMAHIGSYVPAESAQIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLV 689 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA+ E+L L ATH+ ELT+L L N L Sbjct: 690 LMDEIGRGTSTYDGLSLAWASAEWLATQIGAMTLFATHYFELTELPNLLPNLANVHLDAV 749 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 + + I F+H V G A SYG+ V LAG+P TVI A L E+L + Sbjct: 750 EHGDSIAFMHAVQEGAASKSYGLAVAGLAGVPKTVIKNARTKLSQLEQLGQASDS----- 804 Query: 854 YPEIQTKESKNNLS--KNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P T + N LS + + ++ D ++P AL+ LY +K Sbjct: 805 -PRPSTVDVANQLSLIPEPSEIEQALSNIDPDNLTPRQALEELYRLK 850 >gi|261866758|ref|YP_003254680.1| DNA mismatch repair protein MutS [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412090|gb|ACX81461.1| DNA mismatch repair protein MutS [Aggregatibacter actinomycetemcomitans D11S-1] Length = 866 Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust. Identities = 318/895 (35%), Positives = 489/895 (54%), Gaps = 50/895 (5%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 LE+NL TPMM+QY+++K+ NPD L+FYRMGDFYELF+DDA AS L I+LTKRG+ Sbjct: 3 LEDNLTQHTPMMKQYLQLKAENPDILLFYRMGDFYELFYDDAKRASALLDISLTKRGQSA 62 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G+ IPM GVP H Y+ KL+++G +AICEQ+ P AK V R +VR+VTPG Sbjct: 63 GQPIPMAGVPYHAVEGYLAKLVQLGESVAICEQVGDPNTAK-----GPVERQIVRIVTPG 117 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPRE 196 T++++ LL N + AV + + + +A +D+++G F++ L +++ RI P E Sbjct: 118 TVSDEALLPERQDNLIAAVYQEKDHFGLATLDMTSGRFQVCEPQSPADLQTELQRIAPVE 177 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 +++ E A+++ + G +P F+ + ++ +N + FG VE Sbjct: 178 LLYCE---DFADFQLIEHAKG--LRRRPIWEFELKTAIQQLCHQFNTKDLRGFG----VE 228 Query: 257 KT-----AAAAAISYIKKTQMVNKPTIG----YPEREDIQSTLFIDSAARSNLEILRTLS 307 K AA + Y ++TQ P I E+IQ +D+A R NLE+ + LS Sbjct: 229 KAILGLCAAGCLLQYARETQRTALPHIQSIYLVQHSENIQ----LDAATRRNLELTQNLS 284 Query: 308 GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI 367 G E +L +D +T G RL I P+ D K+ R +I ++ + + +Q Sbjct: 285 GGTENTLAAVLDKCVTPMGSRLLKRWIHQPICDVAKLMQRQQAIGTILEQDLAAD-LQPY 343 Query: 368 LKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL 427 L+ D+ R L+R+ + P+D+ +R + I NL L ++ ++L Sbjct: 344 LQQVGDMERILARVALRTVRPRDLTRLRTALEQIPYIKNL-LAEKTSAKMTALYQQLSDF 402 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 + L + + P RDGG + G A LDE R+L D + R + L+ + E T Sbjct: 403 SVQFD-LLQRAIIESPPVLIRDGGVIAPGYHAELDEWRALADGATRYLEELEQRERESTG 461 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 I +LKI N GY+I+++ A ++ ++ RQT+ N R+ EL E+++ Sbjct: 462 IDSLKIGFNAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKTYEDKV 515 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 A ++L +E + ++ + ++ L A +A +D+ LA A+ NY P Sbjct: 516 LKAKGASLALEKQLYDEIFAQLLPHLSRLQLAGLALAELDVLTNLAERAENLNYVAPTFS 575 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 T +++GRHP+VE+ LK+ PFIAN +L+ ++TGPNMGGKST++ Sbjct: 576 EQTGIHIQNGRHPVVEQVLKE----PFIANPTELT-----EQQHFLIITGPNMGGKSTYM 626 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ ALI +MA MGS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QA Sbjct: 627 RQTALITLMAYMGSFVPADSAVIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQA 686 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 T +S V++DEIGRGT+T DGLS+AWA E+L + R L ATH+ ELT L + + N Sbjct: 687 TEKSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKIRSLTLFATHYFELTILPEQVNGIGN 746 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ 847 L + N+ I F+H V G A SYG+ V LAG+P VI A L EKL + N Sbjct: 747 IHLDAMEHNDTIAFMHAVQHGAASKSYGLAVAALAGVPQQVIKLAEQKLAQLEKLSNQNT 806 Query: 848 ----KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +D+RL ++ +N + + ++ L+ DE+SP AL LY +K Sbjct: 807 NQQIQDLRLLNQRQGELAFESAEDENKDMLLHMLQELDPDELSPKQALAYLYQLK 861 >gi|148978206|ref|ZP_01814736.1| DNA mismatch repair protein [Vibrionales bacterium SWAT-3] gi|145962628|gb|EDK27904.1| DNA mismatch repair protein [Vibrionales bacterium SWAT-3] Length = 853 Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust. Identities = 308/886 (34%), Positives = 490/886 (55%), Gaps = 50/886 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 + TPMM+QY+++K+ NP+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IP Sbjct: 5 QKHTPMMQQYLKLKAENPEILLFYRMGDFYELFYDDAKKASQLLDISLTKRGSSNGEPIP 64 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H Y+ KL+++G +AICEQI +P +K V R VVR+VTPGT+T++ Sbjct: 65 MAGVPYHAVEGYLAKLVQLGESVAICEQIGNPALSK-----GPVERAVVRIVTPGTVTDE 119 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSE 201 LLS N + A+ ++ A +DI++G F++ + + +++ R PRE++F E Sbjct: 120 ALLSERVDNLIAAIYHHSGKFGYATLDITSGRFQLCEPETEEAMAAELQRTSPRELLFPE 179 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAA 260 + + GN +P F+ ++ ++ + + G +++ AA Sbjct: 180 ---DFEPVELMASRTGNRR--RPVWEFELDTAKQQLNQQFGTRDLVGLGVEGAKLGLCAA 234 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 I Y+K TQ P I + ++ +D+A R NLEI + L G + +L + +D+ Sbjct: 235 GCLIQYVKDTQRTALPHIRSLTMDKQDHSVILDAATRRNLEITQNLGGGTDNTLAEVLDH 294 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G R+ + P+ + + ++ RLD+I +++ L +Q LK D+ R L+R Sbjct: 295 TATAMGSRMLKRWLHQPMRNISALDQRLDAIGE-MKDLALFTELQPTLKQIGDIERILAR 353 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 L + P+D+A +R + + LK+ +L L ++ + LE+ + Sbjct: 354 LALRSARPRDMARLRQAMEYLPELAETLNQLKHPYLTQLAQYASPLDEVSELLERAIK-- 411 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 ++ P RDGG + +G +A LDE R+L + + L+ + E I LK+ +NN Sbjct: 412 --ENPPVVIRDGGVIAEGYNAELDEWRNLAAGATEFLDQLEQEERERHGIDTLKVGYNNV 469 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 G+FI+V+ + ++ ++ RQT+ N R+ EL + E+++ N+ + AL IE Sbjct: 470 HGFFIQVSRGQSHLVPP------HYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALAIE 523 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + +E L + ++ E L N + ++ +D+ LA A +YCRP + S ++ GR Sbjct: 524 KQLWEELFDLLLPHLERLQNIASSVSQLDVLQNLAERADTLDYCRPTMTESAGVQIQAGR 583 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ + + PFIAN DL NDK K+ ++TGPNMGGKST++RQ ALI +MA Sbjct: 584 HPVVEQVMDE----PFIANPIDL---NDKR--KMLIITGPNMGGKSTYMRQTALIALMAH 634 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +G YVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V++DEI Sbjct: 635 IGCYVPAESATIGSIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATPNSLVLMDEI 694 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGLS+AWA+ E+L L ATH+ ELT+L + N L + + Sbjct: 695 GRGTSTYDGLSLAWASAEWLANQINAMTLFATHYFELTELPNQIPTLANVHLDAVEHGDS 754 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 I F+H V G A SYG+ V LAG+P VI A L E L + Sbjct: 755 IAFMHAVQEGAASKSYGLAVAGLAGVPKAVIKNARAKLTQLEALSIESPT---------- 804 Query: 859 TKESKNNLSKNDKLFVE------KIKCLNLDEMSPLTALKTLYAVK 898 +K S +++ L E + ++ D+++P AL+ LY +K Sbjct: 805 SKPSGVDIANQLSLIPEPSEVEQALANVDPDDLTPRQALEELYRLK 850 >gi|190411089|gb|ACE78299.1| MutS [Vibrio parahaemolyticus] Length = 850 Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust. Identities = 306/883 (34%), Positives = 490/883 (55%), Gaps = 44/883 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 + TPMM+QY+++K+ NP+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IP Sbjct: 5 QKHTPMMQQYLKLKAENPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGSSAGEPIP 64 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+T++ Sbjct: 65 MAGVPFHAVEGYLAKLVQLGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTVTDE 119 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSE 201 LLS N + A+ ++ A +D+++G F+++ + +++++ R PRE++F E Sbjct: 120 ALLSERLDNLIAAIYHHNGKFGYATLDVTSGRFQLTEPETEEAMMAELQRTAPRELLFPE 179 Query: 202 KELSHAEYKSLF-ETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTA 259 +++ ++ + N +P F+ ++ ++ + + FG + + A Sbjct: 180 ------DFEPVYLMSNRNGNRRRPVWEFELDTAKQQLNQQFGTRDLVGFGVEHASLGLCA 233 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A I Y+K TQ P I + ++ +D+A R NLEI + L+G + +L +D Sbjct: 234 AGCLIQYVKDTQRTALPHIRSLTFDRQDHSVILDAATRRNLEITQNLAGGTDNTLAAVLD 293 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G R+ + P+ +N RLD+I I++ L +Q LK D+ R L+ Sbjct: 294 HCSTPMGSRMLKRWLHQPMRCIDTLNNRLDAIGE-IKDQGLFTDLQPTLKQIGDIERILA 352 Query: 380 RLKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 RL + P+D+A +R ++ + L L + +L + ++ + LE+ + Sbjct: 353 RLALRSARPRDMARLRHAMQQLPELESLTASLTHPYLVKLAQYAAPIDEVCELLERAIK- 411 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 ++ P RDGG + +G + LDE R L D + + L+ + I LK+ +NN Sbjct: 412 ---ENPPVVIRDGGVIAEGYNEELDEWRKLADGATEYLEKLEADERDRHGIDTLKVGYNN 468 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 G++I+V+ + ++ ++ RQT+ N R+ EL + E+++ N+ + AL + Sbjct: 469 VHGFYIQVSRGQSHLVPP------HYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALAL 522 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + +E L + ++ E + N + ++ +D+ LA A +YCRP + ++ G Sbjct: 523 EKKLWEELFDLLMPHLEQMQNLASAVSQMDVLQNLAERADSLDYCRPTLVKDAGIHIQAG 582 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE Q +S PFIAN +LS S K+ ++TGPNMGGKST++RQ ALI +MA Sbjct: 583 RHPVVE----QVTSDPFIANPIELS-----PSRKMLIITGPNMGGKSTYMRQTALIALMA 633 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GSYVPA A +G +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V++DE Sbjct: 634 HIGSYVPAESAQVGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLVLMDE 693 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGT+T DGLS+AWA+ E+L L ATH+ ELT+L L N L + + Sbjct: 694 IGRGTSTYDGLSLAWASAEWLATQIGAMTLFATHYFELTELPNLLPNLANVHLDAVEHGD 753 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 I F+H V G A SYG+ V LAG+P TVI A L E+L + P Sbjct: 754 SIAFMHAVQEGAASKSYGLAVAGLAGVPKTVIKNARTKLSQLEQLGQASDS------PRP 807 Query: 858 QTKESKNNLS--KNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 T + N LS + + ++ D+++P AL+ LY +K Sbjct: 808 STVDVANQLSLIPEPSEVEQALSNIDPDDLTPRQALEELYRLK 850 >gi|225620061|ref|YP_002721318.1| DNA mismatch repair protein MutS [Brachyspira hyodysenteriae WA1] gi|225214880|gb|ACN83614.1| DNA mismatch repair protein MutS [Brachyspira hyodysenteriae WA1] Length = 887 Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust. Identities = 325/849 (38%), Positives = 491/849 (57%), Gaps = 63/849 (7%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 EEN K TPMMRQY EIK DS++ +RMGDFYE+FFDDA + S LG+TLTKR Sbjct: 11 EENQKL-TPMMRQYKEIKDKYSDSILLFRMGDFYEVFFDDAKIVSDILGLTLTKRA---- 65 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 ++PM GVP H ++Y+ KL+K G +IAIC+Q+E P AK +V+R V +++TPGT Sbjct: 66 -NVPMAGVPYHAIDNYLSKLVKSGMKIAICDQMEDPKTAK-----GIVKREVTQVITPGT 119 Query: 139 LTEDQLLSPTDSNYLMAVARIRTE--WAIAWIDISTGIFKIST-----SNHDR------- 184 ++E++ L +NYL +V ++E A++ DISTG + NH+ Sbjct: 120 ISENKYLESKSNNYLASVIVSKSEKNAALSICDISTGELYATEINSNLENHNEALKEIIN 179 Query: 185 -LISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYN 242 L +I+R P+EI+ E K + N+ + PN ++S + + +++ Sbjct: 180 ELTEEIIRFSPKEIMTIESVSESIIIKEIQNKFNNIFYSTTPNYTAEYSYAYKTLTNHFK 239 Query: 243 ITTVDTFGSFSQVEK-----TAAAAAISYIK---KTQMVNKPTIGYPEREDIQSTLFIDS 294 ++ +FG +E+ + + I YI+ KT + + I R D ++ +D Sbjct: 240 TVSLKSFG----IEEKPLLISLLGSTIFYIQELSKTSLEHISNIKLYNRRD---SMTLDY 292 Query: 295 AARSNLEILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINF 353 A ++LEIL T+ + + + +L TID + T G R I PL + +IN RL+++ F Sbjct: 293 ATIASLEILETIRNDNNKMTLFDTIDRTKTSMGARYLKRIIVEPLLNIEEINKRLNNVEF 352 Query: 354 FIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDL 413 F +N + I+ +L+ D+ R S+L +GR PK++ ++ + + ++ N+ Sbjct: 353 FYKNQKFMYKIRDLLQDIGDIERLASKLALGRINPKELVSLKRFLVGSLEVVTELAMNNF 412 Query: 414 PEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKR 473 + V +K + +E+ + +D +G ++D D +L + R + + Sbjct: 413 EDVNFEEVNDIKIITDLIERAIL----EDPKVVINEGDIIKDDYDETLKKYNEARREGRS 468 Query: 474 IIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLT 533 I+ L+ Y ++T I NLKI++NN +GY++EVT S+ S + D FI RQT+ Sbjct: 469 WISELEYNYKQDTGINNLKIRYNNVIGYYVEVTKSNVSSVPSD------FIKRQTLIGSE 522 Query: 534 RFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALA 593 R+TT +L++ E I A + +E + F + N E S+ ++VI+IID+ +LA Sbjct: 523 RYTTSKLMEYETIINEANEKSYALEYDIFINVRNKTNEYLNSILKMARVISIIDVYSSLA 582 Query: 594 ILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLW 653 LAKE NY +PII + +KDGRHP+VE LK +S FI ND L N+ + Sbjct: 583 CLAKEDNYIKPIITDDGIIDIKDGRHPVVEVNLKTES---FIPNDTYLDNKNEH----ML 635 Query: 654 LLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTF 713 ++TGPNM GKST+LRQ ALIV++AQ+GS+VPAS A I IVD++F+RVG++DN+A G STF Sbjct: 636 IITGPNMSGKSTYLRQTALIVLLAQIGSFVPASSAKISIVDRIFTRVGASDNIARGESTF 695 Query: 714 MVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYL-HETN-RCRGLLATH 771 +VEM ETA ILN T++S VI+DEIGRGT+T DGLSIAWA +EYL HE N + + L ATH Sbjct: 696 LVEMNETAYILNHCTDKSLVIMDEIGRGTSTYDGLSIAWAIVEYLVHEENKKAKTLFATH 755 Query: 772 FHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISR 831 +HELT L + L+ N + V + + IIF+ KV G A SYGI K+AG PN VI R Sbjct: 756 YHELTML-EDLEGVKNYKVLVEEYKDEIIFMKKVTEGAAKSSYGIYAAKIAGAPNKVIKR 814 Query: 832 AYDILKTFE 840 A +ILK E Sbjct: 815 ATEILKRLE 823 >gi|254242318|ref|ZP_04935640.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa 2192] gi|126195696|gb|EAZ59759.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa 2192] Length = 855 Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust. Identities = 314/890 (35%), Positives = 491/890 (55%), Gaps = 52/890 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L TPMM+QY ++K +PD L+FYRMGDFYELF++DA A++ L ITLT RG+ GK Sbjct: 3 DLSQHTPMMQQYFKLKHQHPDQLMFYRMGDFYELFYEDAKKAAKLLDITLTARGQSGGKA 62 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM G+P H+A Y+ KL+K+G +AICEQI P +K V R VVR++TPGT++ Sbjct: 63 IPMAGIPFHSAEGYLAKLVKLGESVAICEQIGDPAT-----SKGPVERQVVRIITPGTVS 117 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIF 199 ++ LL N L A+ + +A +DI++G F + + L++++ R++P E++ Sbjct: 118 DEALLDERRDNLLAAILGDERLFGLAVLDITSGRFSVQEIKGWETLLAELERLNPAELLI 177 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + ++ V + + FD + + + + FG + Sbjct: 178 PD------DWPQGLPAEKRRGVRRRAPWDFDRDSAHKSLCQQFGTQDLKGFGCQNLTLAI 231 Query: 259 AAAAA-ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA ++Y K+TQ P + + + T+ +D A+R NLE+ LSG RE +L Sbjct: 232 GAAGCLLAYAKETQRTALPHLRSLRHDRLDDTVILDGASRRNLELDINLSGGRENTLQSV 291 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D T RL + + PL D + R +SI ++ N +Q LK D+ R Sbjct: 292 VDRCQTAMASRLMSRWLNRPLRDRAVLEARQESIACLLERYRFEN-LQPQLKEIGDLERI 350 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 L+R+ + P+D+A +RD + + ++ N + + P L+ + P+ L + L+ Sbjct: 351 LARIGLRNARPRDLARLRDALAALPDLQNAMTELEAP-HLQALATTIGTYPE-LAELLAK 408 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + D+ P RDGG ++ G DA LDE ++L + + + + L+ + T + NLK+ +N Sbjct: 409 AIIDNPPAVIRDGGVIKTGYDAELDELQALSENAGQFLMDLEAREKARTGLPNLKVGYNR 468 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GYFIE+ A D +I RQT+ RF T EL E++ +A + AL Sbjct: 469 IHGYFIELPRVQAEQAPAD------YIRRQTLKGAERFITPELKAFEDKALSAQSRALAR 522 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E +E L +I L +++ +A +D+ LA A + RP T ++ G Sbjct: 523 EKALYEELLERLIGHLAPLQDSASALAELDVLANLAERALNLDLNRPRFVEHTCLHIEQG 582 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ L+ PF+ N+ P D ++ ++ ++TGPNMGGKST++RQ ALIV++A Sbjct: 583 RHPVVEQVLE----TPFVVNN----LPLDADT-RMLVITGPNMGGKSTYMRQTALIVLLA 633 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V++DE Sbjct: 634 HIGSFVPAARCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDE 693 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 +GRGT+T DGLS+AWA E L T R L ATH+ ELT L +S N L ++ NE Sbjct: 694 VGRGTSTFDGLSLAWAAAEDLART-RAFTLFATHYFELTVLPESQPAVANVHLNATEHNE 752 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--KLYHHNQKDMRLYYP 855 I+FLH V+PG A SYG+ V +LAG+P VI RA + LK E L H P Sbjct: 753 RIVFLHHVLPGPASQSYGLAVAQLAGVPAPVIQRAREHLKRLETTSLPHE--------MP 804 Query: 856 EIQTKESKNNLSKNDKLF-------VEKIKCLNLDEMSPLTALKTLYAVK 898 Q+ + + + + LF ++++ +N D++SP AL LYA K Sbjct: 805 SQQSGKPASPMQSD--LFASLPHPVIDELSRINPDDISPRQALDLLYAWK 852 >gi|322513151|ref|ZP_08066283.1| DNA mismatch repair protein MutS [Actinobacillus ureae ATCC 25976] gi|322121083|gb|EFX92906.1| DNA mismatch repair protein MutS [Actinobacillus ureae ATCC 25976] Length = 864 Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust. Identities = 315/891 (35%), Positives = 490/891 (54%), Gaps = 41/891 (4%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 + ++L TPMM QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG Sbjct: 1 MAQDLSKHTPMMVQYLQLKAQNPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGASA 60 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G+ IPM GVP H Y+ KL+ +G +AICEQI P +K V R VVR+VTPG Sbjct: 61 GEPIPMAGVPYHAVEGYLAKLVALGESVAICEQIGDPAT-----SKGPVERKVVRIVTPG 115 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPRE 196 T++++ LL N + A+ + +AIA +D+++G F I+ S+ + L +++ R+ P E Sbjct: 116 TVSDEALLPERQDNLVAAIYEEKGVFAIATLDMASGRFLITELSSKEALAAELQRLQPAE 175 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 I+++E + S AE + ++ L +P F+ + + + + ++ FG + V Sbjct: 176 ILYAE-DFSAAEILNNYKGLRR----RPVWEFELVTAINLLNRQFGTQSLAGFGVEKAVV 230 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA + Y ++TQ P I T+ +D+A R NLE+ + L+G E +L Sbjct: 231 ALCAAGCVLHYAQETQRTALPHINSIHLAQNSDTILLDAATRRNLELTQNLAGGTENTLA 290 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D +T G RL I P+ D K+ R D I+ +Q I +Q +L++ D+ Sbjct: 291 AVLDKCVTPMGSRLLKRWIHQPIRDLEKLKKRQDIIDT-LQQEQRIEQLQPLLQNVGDME 349 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN--DLPEELRGAVEKLKKLPQSLEK 433 R L+R+ + P+D+ +R + +I KN +L L V ++ + L Sbjct: 350 RILARVALRSARPRDLTRLRTALAQLPDIA----KNAKNLTASLDALVAQIGDFSE-LHA 404 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + + P RDGG + +G +A LDE R L + + + +L+++ E T I LKI Sbjct: 405 LLERAIIETPPQLIRDGGVIAEGYNAELDEWRELSAGATQYLENLEIREREATGIDTLKI 464 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GY+I+++ A ++ ++ RQT+ N R+ EL E+++ A + Sbjct: 465 GFNAVHGYYIQISQGQAH------KAPMHYVRRQTLKNAERYIIPELKTYEDKVLKAKGA 518 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 +L +E + ++ L + ++ + L A+ ++ +D+ LA A+ NY RPI Sbjct: 519 SLALEKQLYDELFDLLMPRLGELQLAAMALSELDVLTNLAERAESLNYVRPIFSLQRGVN 578 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +K GRHP+VE+ LK PFIAN L+ L ++TGPNMGGKST++RQ ALI Sbjct: 579 IKGGRHPVVEQVLK----DPFIANPVFLNAQR-----HLLVVTGPNMGGKSTYMRQIALI 629 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT S V Sbjct: 630 SLMAYIGSFVPADSAEIGALDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATENSLV 689 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA E+L + + L ATH+ ELT L LK N L Sbjct: 690 LIDEIGRGTSTYDGLSLAWACAEWLAKRTQSLTLFATHYFELTSLPSQLKGVANVHLDAR 749 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL------YHHNQ 847 + + I+F+H V G A SYG+ V LAG+P VI A L E++ H N Sbjct: 750 EHQDSIVFMHSVQEGAASKSYGLAVAALAGVPKQVIQLAKQRLAHLEEISLQTKEAHDNP 809 Query: 848 KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L+ ++Q L + + ++ DE++P AL LY +K Sbjct: 810 QGDLLFGADLQETPQIQPLVVQQSELEKALMSIDPDELTPRQALDELYRLK 860 >gi|189083238|sp|Q2SBR5|MUTS_HAHCH RecName: Full=DNA mismatch repair protein mutS Length = 860 Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust. Identities = 316/889 (35%), Positives = 494/889 (55%), Gaps = 57/889 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ IK+ +P LVFYRMGDFYELF++DA A+ L ITLT+RG+ G+ IPM G Sbjct: 13 TPMMQQYLGIKAKHPHQLVFYRMGDFYELFYEDARRAAELLDITLTQRGQSGGQPIPMAG 72 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A YI +L+++G + ICEQ+ P +K V R VVR+VTPGTL+++ L Sbjct: 73 VPFHAAEGYIGRLVRLGESVVICEQVGDPA-----ASKGPVERKVVRVVTPGTLSDEAFL 127 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKEL 204 N L+A++ + + +A +DI+ G F I + L S++ R+ P EI+ SE+ Sbjct: 128 EEKSDNLLLAISAYKDLFGLATLDIAGGRFLIQEVRGVEALASELQRLRPAEILVSEQ-- 185 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYY---NITTVDTFGSFSQVEKTAAA 261 + +L E V QP +F+ ++ + + ++ D G + +E AA Sbjct: 186 --FPFLTLLENYTGVQ-KQPPWYFEQETAQRLLCQQFRTKDLAGFDCEGMSAAIE--AAG 240 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 Y ++TQ P I RE + ++ +D+A+R NLEI L+G +L +D S Sbjct: 241 CLFQYAQETQRSQLPHIRTMIRERREDSIILDAASRRNLEIDVNLAGDYRHTLAWVMDKS 300 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G R+ + PL ++ R ++I +++ + + LK D R LSR+ Sbjct: 301 ATAMGSRMLRRWLNRPLRSQEEVRQRQNAIKELLED-YQFEALHETLKQIGDSERILSRV 359 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEE--------LRGAVEKLKKLPQSLEK 433 + P+D+A +RD L L DL ++ LR +++ + P + Sbjct: 360 ALRSARPRDLARLRD---------TLTLLPDLQKQMEELNDTHLRRLAKQVSEFP-DIAD 409 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 LS + ++ P RDGG LR G D LDE RS+ + + + ++ + E T++ +LK+ Sbjct: 410 LLSRAIEENPPVVIRDGGVLRQGFDEELDELRSISENAGDYLLEIEKREKERTQLSSLKV 469 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GYFIE++ + + D +I RQT+ N RF T EL E++ +A + Sbjct: 470 GYNRVHGYFIELSRTQSDQAPAD------YIRRQTLKNAERFITPELKTFEDKALSAKSR 523 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL E ++ + I+EQ L ++++ ++ +D+ A A N P + + Sbjct: 524 ALSREKMLYDQILETIVEQLAPLQDSARALSELDVLSNFAERALTLNLVCPDLTDEHMLH 583 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 ++ GRHP+VE Q S PF+ ND +L DK+ ++ ++TGPNMGGKST++RQ A I Sbjct: 584 IEGGRHPVVE----QVSQDPFVPNDLNL---QDKH--RMLIITGPNMGGKSTYMRQTACI 634 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 VI+A GS+VPA+ IG +D++F+R+GS+D++A GRSTFMVEM ETA+IL+ AT QS V Sbjct: 635 VILAYCGSFVPAAKVVIGPIDRVFTRMGSSDDIAGGRSTFMVEMTETANILHYATRQSLV 694 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DE+GRGT+T DGLS+AWA E+L + L ATH+ ELT L K+ N L + Sbjct: 695 LMDEVGRGTSTFDGLSLAWACAEHLAREIQAFTLFATHYFELTALPKTHANVANVHLTAT 754 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 + N+ I+FLH V G A SYGIQV +LAG+P VI++A LK E ++ + Sbjct: 755 EHNDSIVFLHTVHEGPASKSYGIQVAQLAGVPPQVINQAQKQLKQLES--GASKPALTAP 812 Query: 854 YPEIQTKESKNNLSKNDKLFVE-KIKCLNLDEMSPLTALKTLYAVKAWT 901 P +Q + ++ + VE +++ L++D +SP AL LY +K + Sbjct: 813 APSLQ----DDLFARVEPSEVETRLQKLDVDSLSPREALNMLYELKTMS 857 >gi|330985143|gb|EGH83246.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. lachrymans str. M301315] Length = 859 Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust. Identities = 314/886 (35%), Positives = 488/886 (55%), Gaps = 46/886 (5%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 L S TPMM+QY ++K+ + D L+FYRMGDFYE+F++DA A++ L ITLT RG+ G+ I Sbjct: 8 LSSHTPMMQQYWKLKNQHLDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQSI 67 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCG+P H A Y+ KL+K+G + ICEQI P +K V R VVR++TPGT+++ Sbjct: 68 PMCGIPYHAAEGYLAKLVKLGESVVICEQIGDPAT-----SKGPVDRQVVRIITPGTISD 122 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFS 200 + LL N + AV + +A +DI++G F + + L++++ RI+P E++ Sbjct: 123 EALLDERRDNLIAAVLGDERLFGLAVLDITSGNFSVLEIKGWENLLAELERINPVELLIP 182 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 + + L A + F+ + + ++ + FG + A Sbjct: 183 DDW-----PQGLPAEKRRGARRRAPWDFERDSAHKSLCQQFSTQDLKGFGCENLTLAIGA 237 Query: 261 AAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A + SY K+TQ P + E + T+ +D+A+R NLE+ LSG R+ +L +D Sbjct: 238 AGCLLSYAKETQRTALPHLRSLRHERLDDTVILDAASRRNLELDTNLSGGRDNTLQSVMD 297 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 T G RL + PL D T + R SI F++ N +Q LK D+ R L+ Sbjct: 298 RCQTAMGTRLLTRWLNRPLRDLTILQARQTSITCFLERYRFEN-LQPQLKEIGDIERILA 356 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ + P+D+A +RD + S + L + + L+ + P+ L L + Sbjct: 357 RIGLRNARPRDLARLRDAL-SALPELQQAMTDLEAPHLQQLAQTASIYPE-LADLLQRAI 414 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 D+ P RDGG L+ G DA LD+ +SL + + + + L+ + T + NLK+ +N Sbjct: 415 IDNPPAVIRDGGVLKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLANLKVGYNRVH 474 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GYFIE+ S A D +I RQT+ RF T EL + E++ +A + AL E Sbjct: 475 GYFIELPSKQAEQAPAD------YIRRQTLKGAERFITPELKEFEDKALSAKSRALAREK 528 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 +E L +I L + + +A +D+ LA A + P ++ GRH Sbjct: 529 MLYEALLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLDLNCPRFVAEPCMRIEQGRH 588 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE+ L S PF+AND L +S ++ ++TGPNMGGKST++RQ ALIV++A + Sbjct: 589 PVVEQVL----STPFVANDLALD-----DSTRMLVITGPNMGGKSTYMRQTALIVLLAHI 639 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V++DE+G Sbjct: 640 GSFVPAASCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVG 699 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGT+T DGLS+AWA E L + R L ATH+ ELT L +S N L ++ NE I Sbjct: 700 RGTSTFDGLSLAWAAAECLAQL-RAYTLFATHYFELTVLPESEPLVSNVHLNATEHNERI 758 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 +FLH+V+PG A SYG+ V +LAG+P VISRA + L+ E L + + + Sbjct: 759 VFLHRVLPGPASQSYGLAVAQLAGVPGKVISRAKEHLQRLET--------TSLPHEQPRA 810 Query: 860 KESKNNLSKNDKLF-------VEKIKCLNLDEMSPLTALKTLYAVK 898 K K + + +F ++++ + +D+M+P AL LY ++ Sbjct: 811 KPGKPAVPQQSDMFASLPHPVLDELSKVKVDDMTPRQALDLLYTLQ 856 >gi|254972104|gb|ACT98280.1| msh-like protein [Schmidtea mediterranea] Length = 850 Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust. Identities = 314/884 (35%), Positives = 486/884 (54%), Gaps = 45/884 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 + L S TPMM+QY+ +K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 DKLDSHTPMMQQYLRLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H +Y+ KL+++G +A+CEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGVPHHAVENYLAKLVQLGESVALCEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 T+ LL N L A+ + + A +DIS+G F+++ ++ + + +++ R +P E++ Sbjct: 120 TDKALLQERQDNLLAAIWQDARGFGYATLDISSGRFRVAEPADIETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + E E SL E + +P F+ + ++ + + FG Q + Sbjct: 180 YPET----FEQMSLIEQRHGLR-RRPLWEFEPETARQQLNLQFGTRDLTGFG-VEQAHQA 233 Query: 259 --AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 AA + Y+K TQ + P I E Q + +D+A R NLE+ ++LSG E +L Sbjct: 234 LRAAGCLLQYVKDTQRTSLPHIRGITMERQQDGIIMDAATRRNLELTQSLSGGTENTLAA 293 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D+S+T G R+ + P D +N R +I +Q+ L +Q L+ D+ R Sbjct: 294 ILDHSVTAMGSRMLKRWLHMPTRDIKVLNDRQQAIGA-LQD--LYAELQPSLRQVGDLER 350 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKT 434 L+RL + P+D+A +R + +I L + P + L V + +L LE+ Sbjct: 351 ILARLALRSARPRDLARMRHAFQQLPDIHALLKGVNTPHVQHLLSQVGQFDELQDLLERA 410 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + + P RDGG + G ++ LDE R+L D + + L+++ E+ + LK+ Sbjct: 411 VV----EAPPVLVRDGGVIAPGYNSELDEWRALADGASDYLDRLEIREREKLGLDTLKVG 466 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N GY+I+V+ + ++ ++ RQT+ N R+ EL + E+++ + A Sbjct: 467 FNGVHGYYIQVSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSKGKA 520 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L IE +E L + ++ L ++ +A +D+ LA A+ NY P + + Sbjct: 521 LAIEKGLYEELFDLLLPHLGELQQSAAALAELDVLANLAERAETLNYACPTMSEQPGVRI 580 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 +GRHP+VE+ L S+PFI+N LS ++ ++TGPNMGGKST++RQ ALIV Sbjct: 581 TEGRHPVVEQVL----SEPFISNPLSLSPQR-----RMLIITGPNMGGKSTYMRQTALIV 631 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 +MA +GSYVPAS A IG VD++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V+ Sbjct: 632 LMAHIGSYVPASKAVIGPVDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEHSLVL 691 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 692 MDEIGRGTSTYDGLSLAWACAENLASRIKAMTLFATHYFELTTLPEKMEGVVNVHLDALE 751 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 + I F+H V G A SYG+ V LAG+P VI RA L+ E + +H Sbjct: 752 HGDTIAFMHSVQDGAASKSYGLAVAALAGVPREVIKRARQKLRELEAISNHTASG----- 806 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 L++ VE ++ L+ D +SP AL+ +Y +K Sbjct: 807 --TVDATQMTLLNEETSPAVEALEALDPDSLSPRQALEWIYRLK 848 >gi|45645387|gb|AAS73293.1| DNA mismatch repair protein [Haemophilus influenzae] Length = 861 Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust. Identities = 313/889 (35%), Positives = 494/889 (55%), Gaps = 44/889 (4%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 EEN + TPMM+QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG+ G Sbjct: 4 EENFQQHTPMMQQYLKLKAENPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGQSAG 63 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM G+P H Y+ KL+++G +AICEQI P +K V R +VR+VTPGT Sbjct: 64 QPIPMAGMPYHAVEGYLAKLVQLGESVAICEQIGDPATSK-----GPVERQIVRIVTPGT 118 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N + AV + + ++ +A +D+++G F++ ++ + L +++ RI P E+ Sbjct: 119 VSDEALLPERQDNLIAAVYQEKEKFGLATLDMTSGRFQLCEPADKETLRAELQRIAPVEL 178 Query: 198 IFSEK--ELSHAEY-KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 ++ E+ E++ E+ K L +P F+ S + + + + + FG Sbjct: 179 LYCEEFNEMAAIEHCKGLRR--------RPIWEFELSTAITLLNRQFGTKDLRAFG---- 226 Query: 255 VEKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS 309 VEK+ AA + Y K+TQ P I Q + +D+A R NLE+ + LSG Sbjct: 227 VEKSPLGLSAAGCLLQYAKETQRTALPHIQSISLIQNQDCIQLDAATRRNLELTQNLSGG 286 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 E +L +D +T G RL I P+ D K+ R SI + N L++ +Q L+ Sbjct: 287 TENTLASVLDKCVTPMGSRLLKRWIHQPIRDVEKLKQRQQSIAEIL-NFDLVDELQPYLQ 345 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 D+ R L+R+ + P+D+ +R + I L ++ L ++ + Sbjct: 346 LVGDMERILARVALRSARPRDLTRLRTALEQ-IPALRTIVQQKTSPFLTALFSQITDFSE 404 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 + L L + P RDGG + +G + LDE R L D + + + +L+ + E T I Sbjct: 405 QCD-LLQRALIETPPLLIRDGGVIAEGYNTELDEWRMLSDGATQYLENLEKRERESTGID 463 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LKI N GY+I+++ A ++ ++ RQT+ N R+ EL + E+++ Sbjct: 464 TLKIGFNAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKEYEDKVLK 517 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 + +AL +E + ++ L + ++ +L AS ++ +D+ + LA A NY P + Sbjct: 518 SKGAALALEKQLYDELFDLLLPHLGTLQLASLALSELDVLVNLAERADTLNYVMPTFCDE 577 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 N +++GRHP+VE+ LK PFIAN +L+ ++ L ++ GPNMGGKST++RQ Sbjct: 578 VNVKIENGRHPVVEQVLK----DPFIANPVELN-----HNRHLLVIPGPNMGGKSTYMRQ 628 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI ++A +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT Sbjct: 629 TALITLLAYIGSFVPADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATE 688 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 QS V++DEIGRGT+T DGLS+AWA E+L + R L ATH+ ELT L + L+ N Sbjct: 689 QSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLEGIANIH 748 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 L + N I F+H V G A SYG+ V LAG+P +VI A L EK ++ + Sbjct: 749 LDALEHNNTIAFMHAVQDGAASKSYGLAVAALAGVPQSVIKLAKQKLTQLEKNSSYSAEQ 808 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E + + + E I+ L+ D++SP AL LY +K Sbjct: 809 QIQALREANHNQGELFFEQETDALREAIEKLDPDDLSPKQALAYLYQLK 857 >gi|190411087|gb|ACE78298.1| truncated MutS [Vibrio parahaemolyticus] Length = 848 Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust. Identities = 309/884 (34%), Positives = 485/884 (54%), Gaps = 52/884 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 + TPMM+QY+++K+ NP+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IP Sbjct: 5 QKHTPMMQQYLKLKAENPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGSSAGEPIP 64 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+T++ Sbjct: 65 MAGVPFHAVEGYLAKLVQLGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTVTDE 119 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSE 201 LLS N + A+ ++ A +D+++G F+++ + +++++ R PRE++F E Sbjct: 120 ALLSERLDNLIAAIYHHNGKFGYATLDVTSGRFQLTEPETEESMMAELQRTAPRELLFPE 179 Query: 202 KELSHAEYKSLFETLG-----NVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 FE + N +P F+ ++ ++ + + FG + + Sbjct: 180 D----------FEPVHLMSNRNGNRRRPVWEFELDTAKQQLNQQFGTRDLVGFGVEHASL 229 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA I Y+K TQ P I + + ++ +D+A R NLEI + L+G + +L Sbjct: 230 GLCAAGCLIQYVKDTQRTALPHIRSLTFDRQEHSVILDAATRRNLEITQNLAGGTDNTLA 289 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D+ T G R+ + P+ +N RLD+I I++ L +Q LK D+ Sbjct: 290 AVLDHCSTPMGSRMLKRWLHQPMRCIDTLNNRLDAIGE-IKDQGLFTDLQPTLKQIGDIE 348 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 R L+RL + P+D+A +R ++ + L L + +L + ++ + LE+ Sbjct: 349 RILARLALRSARPRDMARLRHAMQQLPELESLTASLTHPYLVKLAQYAAPIDEVCELLER 408 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + ++ P RDGG + +G + LDE R L D + + L+ E I LK+ Sbjct: 409 AIK----ENPPVVIRDGGVIAEGYNEELDEWRKLADGATEYLEKLEADERERHGIDTLKV 464 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N G+FI+V+ + ++ ++ RQT+ N R+ EL + E+++ N+ + Sbjct: 465 GYNAVHGFFIQVSRGQSHLVPP------HYVRRQTLKNAERYIIPELKEHEDKVLNSKSK 518 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E + +E L + ++ E + N + ++ +D+ LA A +YCRP + Sbjct: 519 ALALEKKLWEELFDLLMPHLEQMQNLASAVSQMDVLQNLAERADSLDYCRPTLVKDAGIH 578 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 ++ GRHP+VE Q +S PFIAN +LS S K+ ++TGPNMGGKST++RQ ALI Sbjct: 579 IQAGRHPVVE----QVTSDPFIANPIELS-----PSRKMLIITGPNMGGKSTYMRQTALI 629 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V Sbjct: 630 ALMAHIGSYVPAESAQIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLV 689 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA+ E+L L ATH+ ELT+L L N L Sbjct: 690 LMDEIGRGTSTYDGLSLAWASAEWLATQIGAMTLFATHYFELTELPNLLPNLANVHLDAV 749 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 + + I F+H V G A SYG+ V LAG+P TVI A L E+L + Sbjct: 750 EHGDSIAFMHAVQEGAASKSYGLAVAGLAGVPKTVIKNARTKLSQLEQLGQASDS----- 804 Query: 854 YPEIQTKESKNNLS--KNDKLFVEKIKCLNLDEMSPLTALKTLY 895 P T + N LS + + ++ D+++P AL+ LY Sbjct: 805 -PRPSTVDVANQLSLIPEPSEIEQALSNIDPDDLTPRQALEELY 847 >gi|254881008|ref|ZP_05253718.1| DNA mismatch repair protein mutS [Bacteroides sp. 4_3_47FAA] gi|254833801|gb|EET14110.1| DNA mismatch repair protein mutS [Bacteroides sp. 4_3_47FAA] Length = 883 Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust. Identities = 317/885 (35%), Positives = 498/885 (56%), Gaps = 40/885 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+Q+ E+K+ +PD+++ +R GDFYE + +DA++AS LGITLTKR K + M G Sbjct: 21 TPMMKQFFELKAKHPDAIMLFRCGDFYETYSEDAIVASEILGITLTKRANGQAKSVEMAG 80 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KL++ G R+AIC+Q+E P KK LV+R + LVTPG D +L Sbjct: 81 FPFHALDTYLPKLVRAGKRVAICDQLEDPKMTKK-----LVKRGITELVTPGVAINDNVL 135 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF--SEKE 203 S ++N+L AV + +A++DISTG F + D + + P+E++F ++ Sbjct: 136 SYKENNFLAAVHFGKASCGVAFLDISTGEFLTAEGPFDYIDKLLNNFAPKEVLFERGKRG 195 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + + S F T + F+ S S ++ ++ + FG A+ A Sbjct: 196 MFEGNFGSKFFTF-----ELDDWVFNESSSREKLLKHFETKNLKGFGVEHLKNGIVASGA 250 Query: 264 I-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 I Y+ TQ I R + + +D +LE++ +++ SLL ID +I Sbjct: 251 ILQYLNMTQHYQIGHITSLSRIEEDRYVRLDKFTVRSLELIGSMNEGG-TSLLDVIDRTI 309 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 + G RL + PL D +N RLD + +F + P I++ L D+ R +S+ Sbjct: 310 SPMGARLLKRWVVFPLKDEKPVNERLDVVEYFFREPDFKEFIEEKLHLIGDLERIVSKAA 369 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 +GR P+++ ++ +++ I N L D LR E+L L S+ + ++ + +D Sbjct: 370 VGRISPREVVQLKVALQAIEPIKNACLNAD-NGSLRRIGEQLN-LCLSIREKIAKEVKND 427 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P GG + DG +A LDE R + K + +Q + +E T I +LKI +NN GY+ Sbjct: 428 PPLLVNKGGVIADGVNAELDELRQIAFSGKDYLLKVQQRESELTGIPSLKIAYNNVFGYY 487 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IEV ++ + D +I +QT+ N R+ T EL + E +I A + L++E + + Sbjct: 488 IEVRNTHKDKVPAD------WIRKQTLVNAERYITQELKEYEEKILGAEDKILVLETKLY 541 Query: 563 EILSNAIIEQSESLD-NASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 L A+ E ++ NASQ IA +D +A A +AKE NY RP++++S ++ GRHP+ Sbjct: 542 NELVVALAEFIPAIQINASQ-IARLDCLLAFANVAKENNYIRPVVEDSEVIDIRQGRHPV 600 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 +EK L + +IAND L D + ++ ++TGPNM GKS LRQ ALI ++AQMGS Sbjct: 601 IEKQLP--VGEKYIANDVFL----DSETQQIIIITGPNMAGKSALLRQTALITLLAQMGS 654 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA A IG+VDK+F+RVG++DN++ G STFMVEM E A+ILN +++S V+ DE+GRG Sbjct: 655 FVPAESARIGMVDKIFTRVGASDNISVGESTFMVEMNEAANILNNLSSRSLVLFDELGRG 714 Query: 742 TATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 T+T DG+SIAWA +E++HE + R L ATH+HEL ++ KS KR N + V + + + Sbjct: 715 TSTYDGISIAWAIVEHIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEIDNKV 774 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 IFL K+ G ++HS+GI V K+AG+P +++ RA DIL E + Q+ + EI + Sbjct: 775 IFLRKLERGGSEHSFGIHVAKMAGMPKSIVKRANDILHQLET--DNRQQGIAKPTAEIAS 832 Query: 860 KESKNNLS--KNDKLFVEKIK--CLNLD--EMSPLTALKTLYAVK 898 S LS + D + +I+ LNLD ++PL AL L +K Sbjct: 833 GRSGMQLSFFQLDDPVLSQIRDEILNLDVNNLTPLEALNKLNDIK 877 >gi|298488243|ref|ZP_07006278.1| DNA mismatch repair protein MutS [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157251|gb|EFH98336.1| DNA mismatch repair protein MutS [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 859 Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust. Identities = 312/881 (35%), Positives = 486/881 (55%), Gaps = 34/881 (3%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L S TPMM+QY ++K+ + D L+FYRMGDFYE+F++DA A++ L ITLT RG+ G+ Sbjct: 7 DLSSHTPMMQQYWKLKNQHLDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQS 66 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCG+P H A Y+ KL+K+G + ICEQI P +K V R VVR++TPGT++ Sbjct: 67 IPMCGIPYHAAEGYLAKLVKLGESVVICEQIGDPATSK-----GPVDRQVVRIITPGTIS 121 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIF 199 ++ LL N + AV + +A +DI++G F + + L++++ RI+P E++ Sbjct: 122 DEALLDERRDNLIAAVLGDERLFGLAVLDITSGNFSVLEIKGWENLLAELERINPVELLI 181 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 + + L A + F+ + + ++ + FG + Sbjct: 182 PDDW-----PQGLPAEKRRGARRRAPWDFERDSAHKSLCQQFSTQDLKGFGCENLTLAIG 236 Query: 260 AAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA + SY K+TQ P + E + T+ +D+A+R NLE+ LSG R+ +L + Sbjct: 237 AAGCLLSYAKETQRTALPHLRSLRHERLDDTVILDAASRRNLELDTNLSGGRDNTLQSVM 296 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D T G RL + PL D T + R SI F++ N +Q LK D+ R L Sbjct: 297 DRCQTAMGTRLLTRWLNRPLRDLTILQARQTSITCFLERYRFEN-LQPQLKEIGDIERIL 355 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 +R+ + P+D+A +RD + S + L + + L+ + P+ L L Sbjct: 356 ARIGLRNARPRDLARLRDAL-SALPELQQAMTDLEAPHLQQLAQTASTYPE-LADLLQRA 413 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + D+ P RDGG L+ G DA LD+ +SL + + + + L+ + T + NLK+ +N Sbjct: 414 IIDNPPAVIRDGGVLKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLANLKVGYNRV 473 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GYFIE+ S A D +I RQT+ RF T EL + E++ +A + AL E Sbjct: 474 HGYFIELPSKQAEQAPAD------YIRRQTLKGAERFITPELKEFEDKALSAKSRALARE 527 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 +E L +I L + + +A +D+ LA A + P ++ GR Sbjct: 528 KMLYEALLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLDLNCPRFVAEPCMRIEQGR 587 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ L S PF+AND L +S ++ ++TGPNMGGKST++RQ ALIV++A Sbjct: 588 HPVVEQVL----STPFVANDLALD-----DSTRMLVITGPNMGGKSTYMRQTALIVLLAH 638 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V++DE+ Sbjct: 639 IGSFVPAGSCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEV 698 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGLS+AWA E L + R L ATH+ ELT L +S N L ++ NE Sbjct: 699 GRGTSTFDGLSLAWAAAECLAQL-RAYTLFATHYFELTVLPESEPLVTNVHLNATEHNER 757 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL-YHHNQKDMRLYYPEI 857 I+FLH+V+PG A SYG+ V +LAG+P VI+RA + L+ E H Q + P + Sbjct: 758 IVFLHRVLPGPASQSYGLAVAQLAGVPGKVITRAKEHLQRLETTSLPHEQPKAKPGKPAV 817 Query: 858 QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + + ++++ + +D+M+P AL LY ++ Sbjct: 818 --PQQSDMFASLPHPVLDELSKIKVDDMTPRQALDLLYTLQ 856 >gi|28871201|ref|NP_793820.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. tomato str. DC3000] gi|37999569|sp|Q87XW6|MUTS_PSESM RecName: Full=DNA mismatch repair protein mutS gi|28854451|gb|AAO57515.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. tomato str. DC3000] Length = 855 Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust. Identities = 310/881 (35%), Positives = 486/881 (55%), Gaps = 34/881 (3%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L TPMM+QY ++K+ + D L+FYRMGDFYE+F++DA A++ L ITLT RG+ G+ Sbjct: 3 DLSQHTPMMQQYWKLKNQHLDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQS 62 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCG+P H A Y+ KL+K+G + ICEQI P +K V R VVR++TPGT++ Sbjct: 63 IPMCGIPYHAAEGYLAKLVKLGESVVICEQIGDPAT-----SKGPVDRQVVRIITPGTIS 117 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIF 199 ++ LL N + AV + +A +DI++G F + + L++++ RI+P E++ Sbjct: 118 DEALLDERRDNLIAAVLGDERLFGLAVLDITSGNFSVLEIKGWENLLAELERINPVELLI 177 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 + + L A + F+ + + ++ + FG + Sbjct: 178 PDDW-----PQGLPAEKRRGARRRAPWDFERDSAHKSLCQQFSTQDLKGFGCETLTLAIG 232 Query: 260 AAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA + Y K+TQ P + E + T+ +D+A+R NLE+ LSG R+ +L + Sbjct: 233 AAGCLLGYAKETQRTALPHLRSLRHERLDDTVILDAASRRNLELDTNLSGGRDNTLQSVM 292 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D T G RL + PL D + + R SI F++ N +Q LK D+ R L Sbjct: 293 DRCQTAMGTRLLTRWLNRPLRDLSILQARQTSITCFLERYRFEN-LQPQLKEIGDIERIL 351 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 +R+ + P+D+A +RD + + + D P L+ + P+ L L Sbjct: 352 ARIGLRNARPRDLARLRDALSALPELQQAMTDLDAPH-LQQLAQTASTYPE-LADLLQRA 409 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 ++D+ P RDGG L+ G DA LDE +SL + + + + L+ + T + +LK+ +N Sbjct: 410 INDNPPAVIRDGGVLKTGYDAELDELQSLSENAGQFLIDLEAREKARTGLSHLKVGYNRV 469 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GYFIE+ S A D +I RQT+ RF T EL + E++ +A + AL E Sbjct: 470 HGYFIELPSKQAEQAPAD------YIRRQTLKGAERFITPELKEFEDKALSAKSRALARE 523 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 +E L +I L + + +A +D+ LA A + P ++ GR Sbjct: 524 KMLYETLLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLDLNCPRFVAEPCMRIEQGR 583 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ L S PF+AND L +S ++ ++TGPNMGGKST++RQ ALIV++A Sbjct: 584 HPVVEQVL----STPFVANDLALD-----DSTRMLIITGPNMGGKSTYMRQTALIVLLAH 634 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V++DE+ Sbjct: 635 IGSFVPAASCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEV 694 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGLS+AWA E L + R L ATH+ ELT L +S +N L ++ NE Sbjct: 695 GRGTSTFDGLSLAWAAAECLAQL-RAYTLFATHYFELTVLPESEPLVNNVHLNATEHNER 753 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL-YHHNQKDMRLYYPEI 857 I+FLH+V+PG A SYG+ V +LAG+P VI+RA + L+ E H Q + P I Sbjct: 754 IVFLHRVLPGPASQSYGLAVAQLAGVPGKVITRAKEHLQRLETTSLPHEQPRAKPGKPAI 813 Query: 858 QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + + ++++ + +D+M+P AL LY ++ Sbjct: 814 --PQQSDMFASLPHPVLDELSKIKVDDMTPRQALDLLYTLQ 852 >gi|15603695|ref|NP_246769.1| DNA mismatch repair protein [Pasteurella multocida subsp. multocida str. Pm70] gi|13431701|sp|P57972|MUTS_PASMU RecName: Full=DNA mismatch repair protein mutS gi|12722254|gb|AAK03914.1| MutS [Pasteurella multocida subsp. multocida str. Pm70] Length = 860 Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust. Identities = 330/899 (36%), Positives = 489/899 (54%), Gaps = 63/899 (7%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +NL TPMMRQY+ +K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG+ G+ Sbjct: 2 DNLDLHTPMMRQYLALKAENPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGQSAGQ 61 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H Y+ KL+++G +AICEQ+ P +K V R VVR+VTPGT+ Sbjct: 62 PIPMAGVPYHAVEGYLAKLVQLGESVAICEQVGDPAT-----SKGPVERQVVRIVTPGTV 116 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREI 197 +++ LL N + V + + + +A +DI++G F+IS DR L +++ RI P E+ Sbjct: 117 SDESLLPERQDNLIATVYQEKDRFGLAVLDITSGRFQISEPE-DRASLQAELQRISPVEL 175 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 ++ E + A L E + +P F+ + + ++ + FG VEK Sbjct: 176 LYCEDFVDMA----LLEPFKGLR-RRPIWEFELGTAIQLLNRQFHTKDLRGFG----VEK 226 Query: 258 T-----AAAAAISYIKKTQMVNKPTIG----YPEREDIQSTLFIDSAARSNLEILRTLSG 308 AA + Y K TQ P I E IQ +D+A R NLE+ + L+G Sbjct: 227 AILGLCAAGCLLQYAKDTQRTALPHIQSLTLLQHSEHIQ----LDAATRRNLELTQNLAG 282 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKIL 368 E +L +D +T G RL + P+ K+ R + I +Q L+ IQ L Sbjct: 283 GSENTLASVLDKCVTPMGSRLLKRWMHQPIRQHEKLMVRQNRITALLQQD-LVAAIQPYL 341 Query: 369 KSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP 428 + D+ R L+R+ + P+D+ +R + I L L +L ++ + + Sbjct: 342 QQIGDMERILARVALRSARPRDLTRLRTALEQ-IPYLRDILAQQTSSDLTALLQPIGEFS 400 Query: 429 QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 L+ L + D+ P RDGG + +G +A LDE RSL D + R + L+ + E T I Sbjct: 401 AQLD-LLQRAIIDNPPMLIRDGGVIAEGYNAELDEWRSLSDGATRYLEELEQRERESTGI 459 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 LKI N GY+I+++ A ++ ++ RQT+ N R+ EL E+++ Sbjct: 460 DTLKIGFNAVHGYYIQISQGQAH------KAPMHYVRRQTLKNAERYIIPELKTYEDKVL 513 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 A +AL +E + +E L + ++ +L AS +A +D+ LA A+ NY P + Sbjct: 514 KAKGAALALEKQLYEQLFDELLPHLGALQLASLTLAELDVLTNLAERAETLNYVAPQFSD 573 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 ++ GRHP+VE+ L + PFIAN +L L ++TGPNMGGKST++R Sbjct: 574 DIGVHIQQGRHPVVEQVL----NAPFIANPVELHPQR-----HLLIITGPNMGGKSTYMR 624 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q ALI +MA MGS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT Sbjct: 625 QTALITLMAYMGSFVPAESAVIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQAT 684 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA 788 S V++DEIGRGT+T DGLS+AWA E+L + R L ATH+ ELT L + L N Sbjct: 685 ANSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKLRSLTLFATHYFELTVLPEQLAGSANV 744 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ- 847 L + N+ I F+H V G A SYG+ V LAG+P +VI A L EKL N Sbjct: 745 HLDAIEHNDTIAFMHAVQEGAASKSYGLAVAALAGVPQSVIKLAKQKLAQLEKLSQQNAD 804 Query: 848 ---KDMRLYYPEIQTKESKNNLS----KNDKLFV-EKIKCLNLDEMSPLTALKTLYAVK 898 +D+R Q +++ L+ + K V E ++ L+ DE+SP AL LY +K Sbjct: 805 QRIQDLR------QLNQTQGELALMEEDDSKTAVWEMLEKLDPDELSPKQALAYLYQLK 857 >gi|319897854|ref|YP_004136051.1| DNA mismatch repair protein muts [Haemophilus influenzae F3031] gi|317433360|emb|CBY81740.1| DNA mismatch repair protein MutS [Haemophilus influenzae F3031] Length = 861 Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust. Identities = 313/889 (35%), Positives = 495/889 (55%), Gaps = 44/889 (4%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 EEN + TPMM+QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG+ G Sbjct: 4 EENFQQHTPMMQQYLKLKAENPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGQSAG 63 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM G+P H Y+ KL+++G +AICEQI P +K V R +VR+VTPGT Sbjct: 64 QPIPMAGMPYHAVEGYLAKLVQLGESVAICEQIGDP-----TTSKGPVERQIVRIVTPGT 118 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N + AV + + ++ +A +D+++G F++ ++ + L +++ RI P E+ Sbjct: 119 VSDEALLPERQDNLIAAVYQEKEKFGLATLDMTSGRFQLCEPADKETLRAELQRIAPVEL 178 Query: 198 IFSEK--ELSHAEY-KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 ++ E+ E++ E+ K L +P F+ S + + + + + FG Sbjct: 179 LYCEEFNEMAAIEHCKGLRR--------RPIWEFELSTAITLLNHQFGTKDLRAFG---- 226 Query: 255 VEKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS 309 VEK+ AA + Y K+TQ P I Q + +D A R NLE+ + L+G Sbjct: 227 VEKSPLGLSAAGCLLQYAKETQRTALPHIQSISLIQNQDCIQLDVATRRNLELTQNLAGG 286 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 E +L +D +T G RL I P+ D K+ R +I + N L++ +Q L+ Sbjct: 287 TENTLASVLDKCVTPMGSRLLKRWIHQPIRDVEKLEQRQQAIAEIL-NFDLVDELQPYLQ 345 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 D+ R L+R+ + P+D+ +R + I L ++ P L ++ + Sbjct: 346 LVGDMERILARVALRSARPRDLTRLRTALEQ-IPALRAIVQQKTPPFLTALFSQIADFSE 404 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 + L L + P RDGG + +G A LDE R L D + + + +L+ E T I Sbjct: 405 QCD-LLQRALIETPPLLIRDGGVIAEGYHAELDEWRMLSDGATQYLENLEKCERESTGID 463 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LKI N GY+I+++ A ++ ++ RQT+ N R+ EL + E+++ Sbjct: 464 TLKIGFNAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKEYEDKVLK 517 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 + +AL +E + ++ L + ++ +L AS ++ +D+ + LA A NY P + Sbjct: 518 SKGAALALEKQLYDELFDLLLPHLGALQLASLALSELDVLVNLAERADTLNYVMPTFCDE 577 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 + +++GRHP+VE+ LK PFIAN +L+ ++ L ++TGPNMGGKST++RQ Sbjct: 578 VSVKIENGRHPVVEQVLK----DPFIANPVELN-----HNRHLLVITGPNMGGKSTYMRQ 628 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI ++A +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT Sbjct: 629 TALITLLAYIGSFVPADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATA 688 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 QS V++DEIGRGT+T DGLS+AWA E+L + R L ATH+ ELT L + L+ N Sbjct: 689 QSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLEGIANIH 748 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 L + N I F+H V G A SYG+ V LAG+P +VI A L EK ++ ++ Sbjct: 749 LDALEHNNTIAFMHAVQDGAASKSYGLAVAALAGVPQSVIKLAKQKLTQLEKNSSYSVEE 808 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E + + + E I+ L+ D++SP AL LY +K Sbjct: 809 QIQALREANHNQGELLFEQETDALREAIEKLDPDDLSPKQALAYLYQLK 857 >gi|165977038|ref|YP_001652631.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189030436|sp|B0BRS8|MUTS_ACTPJ RecName: Full=DNA mismatch repair protein mutS gi|165877139|gb|ABY70187.1| DNA mismatch repair protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 864 Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust. Identities = 313/891 (35%), Positives = 489/891 (54%), Gaps = 41/891 (4%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 + ++L TPMM QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG Sbjct: 1 MTQDLSKHTPMMAQYLQLKAQNPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGASA 60 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G+ IPM GVP H Y+ KL+ +G +AICEQI P +K V R VVR+VTPG Sbjct: 61 GEPIPMAGVPYHAVEGYLAKLVSLGESVAICEQIGDPAT-----SKGPVERKVVRIVTPG 115 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPRE 196 T++++ LL N + A+ + +AIA +D+++G F I+ N + L +++ R+ E Sbjct: 116 TVSDEALLPERQDNLVAAIYEEKGVFAIATLDMTSGRFLITELPNKEALAAELQRLQLAE 175 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 I+++E + S AE + ++ L +P F+ + + + + ++ FG + V Sbjct: 176 ILYAE-DFSAAEILNNYKGLRR----RPVWEFELVTAINLLNRQFGTQSLAGFGVEKAVV 230 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA + Y ++TQ P I T+ +D+A R NLE+ + L+G E +L Sbjct: 231 ALCAAGCVLHYAQETQRTALPHINSIHLAQNSDTVLLDAATRRNLELTQNLAGGTENTLA 290 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D +T G RL I P+ D K+ R D I+ +Q I P+Q +L++ D+ Sbjct: 291 AVLDKCVTPMGSRLLKRWIHQPIRDLEKLKKRQDIIDT-LQKEQRIEPLQPLLQNVGDME 349 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN--DLPEELRGAVEKLKKLPQSLEK 433 R L+R+ + P+D+ +R + +I KN +L L V ++ + L Sbjct: 350 RILARVALRSARPRDLTRLRTALAQLPDIA----KNAKNLTASLDALVAQIGDFSE-LHA 404 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + + P RDGG + +G +A LDE R L + + + +L+++ E T I LKI Sbjct: 405 LLERAIIETPPQLIRDGGVIAEGYNAELDEWRELSAGATQYLENLEIREREATGIDTLKI 464 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GY+I+++ A ++ ++ RQT+ N R+ EL E+++ A + Sbjct: 465 GFNAVHGYYIQISQGQAH------KAPMHYVRRQTLKNAERYIIPELKTYEDKVLKAKGA 518 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 +L +E + ++ L + ++ + + A+ ++ +D+ LA A+ NY RP Sbjct: 519 SLALEKQLYDELFDLLMPRLGEMQLAAMALSELDVLTNLAERAESLNYVRPTFSLQRGVN 578 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +K GRHP+VE+ LK PFIAN L+ L ++TGPNMGGKST++RQ ALI Sbjct: 579 IKGGRHPVVEQVLK----DPFIANPVFLNAQR-----HLLVVTGPNMGGKSTYMRQIALI 629 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT S V Sbjct: 630 SLMAYIGSFVPADSAEIGALDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATENSLV 689 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA E+L + + L ATH+ ELT L LK N L Sbjct: 690 LIDEIGRGTSTYDGLSLAWACAEWLAKKTQSLTLFATHYFELTSLPSQLKGVANVHLDAR 749 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL------YHHNQ 847 + + I+F+H V G A SYG+ V LAG+P VI A L E++ H N Sbjct: 750 EHQDSIVFMHSVQEGAASKSYGLAVAALAGVPKQVIQLAKQRLAHLEEISLQTKEAHDNP 809 Query: 848 KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L+ ++Q L + + ++ DE++P AL+ LY +K Sbjct: 810 QGDLLFAADLQETPQIQPLVAQQSELEKALMSIDPDELTPRQALEALYRLK 860 >gi|45645395|gb|AAS73297.1| DNA mismatch repair protein [Haemophilus influenzae] Length = 861 Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust. Identities = 312/889 (35%), Positives = 495/889 (55%), Gaps = 44/889 (4%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 EEN + TPMM+QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG+ G Sbjct: 4 EENFQQHTPMMQQYLKLKAENPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGQSAG 63 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM G+P H Y+ KL+++G +AICEQI P +K V R +VR+VTPGT Sbjct: 64 QPIPMAGMPYHAVEGYLAKLVQLGESVAICEQIGDP-----AASKGPVERQIVRIVTPGT 118 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N + AV + + ++ +A +D+++G F++ ++ + L +++ RI P E+ Sbjct: 119 VSDEALLPERQDNLIAAVYQEKEKFGLATLDMTSGRFQLCEPADKETLRAELQRIAPVEL 178 Query: 198 IFSEK--ELSHAEY-KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 ++ E+ E++ E+ K L +P F+ S + + + + + FG Sbjct: 179 LYCEEFNEMAAIEHCKGLRR--------RPIWEFELSTAITLLNRQFGTKDLRAFG---- 226 Query: 255 VEKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS 309 VEK+ AA + Y K+TQ P I Q + +D+A R NLE+ + L+G Sbjct: 227 VEKSPLGLSAAGCLLQYAKETQRTALPHIQSISLIQNQDCIQLDAATRRNLELTQNLAGG 286 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 E +L +D +T G RL I P+ D K+ R SI + N L++ +Q L+ Sbjct: 287 TENTLSSVLDKCVTPMGSRLLKRWIHQPVRDVEKLKQRQQSIAEIL-NFDLVDELQPYLQ 345 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 D+ R L+R+ + P+D+ +R + I L ++ P L ++ + Sbjct: 346 LVGDMERILARVALRSARPRDLTRLRTALEQ-IPALRTIVQQKTPSFLTALFSQIADFSE 404 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 + L L + P RDGG + +G + LDE R L + + + + +L+ + E T I Sbjct: 405 QCD-LLQRALIETPPLLIRDGGVIAEGYNTELDEWRMLSNGATQYLENLEKRERESTGID 463 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LKI N GY+I+++ A ++ ++ RQT+ N R+ EL + E+++ Sbjct: 464 TLKIGFNAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKEYEDKVLK 517 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 + +AL +E + ++ L + ++ SL AS ++ +D+ + LA A NY P + Sbjct: 518 SKGAALALEKQLYDELFDLLLPHLGSLQLASLALSELDVLVNLAERADTLNYVMPTFCDE 577 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 + +++GRHP+VE+ LK PFIAN +L+ ++ L ++TGPNMGGKST++RQ Sbjct: 578 VSVKIENGRHPVVEQVLK----DPFIANPVELN-----HNRHLLVITGPNMGGKSTYMRQ 628 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI ++A +GS+VPA A IG +D++F+R+G++D+LASGR TFMVEM E A+IL+QAT Sbjct: 629 TALITLLAYIGSFVPADSARIGPIDRIFTRIGASDDLASGRLTFMVEMTEMANILHQATA 688 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 QS V++DEIGRGT+T DGLS+AWA E+L + R L ATH+ ELT L + L+ N Sbjct: 689 QSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLESIANIH 748 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 L + N I F+H V G A SYG+ V LAG+P +VI A L EK ++ + Sbjct: 749 LDALEHNNTIAFMHAVQDGAASKSYGLAVAALAGVPQSVIKLAKQKLTQLEKNSSYSAEQ 808 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E + + + E I+ L+ D++SP AL LY +K Sbjct: 809 QIQALREANHNQGELLFEQETDALREAIEKLDPDDLSPKQALAYLYQLK 857 >gi|52426299|ref|YP_089436.1| DNA mismatch repair protein [Mannheimia succiniciproducens MBEL55E] gi|81691283|sp|Q65QA9|MUTS_MANSM RecName: Full=DNA mismatch repair protein mutS gi|52308351|gb|AAU38851.1| MutS protein [Mannheimia succiniciproducens MBEL55E] Length = 861 Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust. Identities = 326/907 (35%), Positives = 498/907 (54%), Gaps = 73/907 (8%) Query: 16 IDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK 75 +++ ENL+ TPMMRQY+ +K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG+ Sbjct: 1 MNVMENLEQHTPMMRQYLALKAENPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGQ 60 Query: 76 HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVT 135 G+ IPM GVP H Y+ KL+++G +AICEQI P +K V R +VR+VT Sbjct: 61 SAGQPIPMAGVPYHAVEGYLAKLVQLGESVAICEQIGDPALSK-----GPVERKIVRIVT 115 Query: 136 PGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDP 194 PGT++++ LL N ++AV + + ++ +A +D+++G F+IS N + L +++ R+ P Sbjct: 116 PGTVSDENLLPERQDNLIVAVYQEKDKFGLATLDMTSGRFQISEPENAESLKAELQRLAP 175 Query: 195 REIIFSE-----KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTF 249 E+++ E + + H YK L +P F+ S + + + + F Sbjct: 176 AELLYCEDFADMQLIEH--YKGLRR--------RPIWEFELSTAVQLLNRQFGTKDLRGF 225 Query: 250 GSFSQVEKT-----AAAAAISYIKKTQMVNKPTIG----YPEREDIQSTLFIDSAARSNL 300 G VEK AA + Y K+TQ P I E+IQ +D+A R NL Sbjct: 226 G----VEKAILGLCAAGCLLQYAKETQRTALPHIQSITLIQNNENIQ----LDAATRRNL 277 Query: 301 EILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL 360 E+ + L+G E +L +D +T G RL I P+ K+ R I+ IQ L Sbjct: 278 ELTQNLAGGTENTLASVLDKCVTPMGSRLLKRWIHQPIRHIQKLRQRQQIISEIIQLD-L 336 Query: 361 INPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGA 420 I +Q L+ D+ R L+R+ + P+D+ +R + I + LKN + Sbjct: 337 IGELQPYLQQVGDMERILARVALRTARPRDLTRLRTALEQ-IPTIKDILKNS--PKFTAL 393 Query: 421 VEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 +++ + L L + D+ P RDGG + +G +A LDE R+L D + + + L++ Sbjct: 394 FQQIGDFDE-LFALLQQAIIDNPPLLIRDGGVIAEGYNAELDEWRALSDGATKYLEDLEI 452 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 + E T I LK+ N GY+I+++ A ++ ++ RQT+ N RF EL Sbjct: 453 RERESTGIDTLKVGFNAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERFIIPEL 506 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 E+++ A ++L +E + ++ L + ++ +L AS ++ +D+ LA A+ N Sbjct: 507 KTYEDKVLKAKGASLALEKQLYDALFDRLLPHLGALQLASLTLSALDVLTNLAERAETLN 566 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 Y P + +++GRHP+VE+ LK+ PFIAN DL+ L ++TGPNM Sbjct: 567 YVAPDFSDEIGVKIENGRHPVVEQVLKE----PFIANPVDLN-----QQRHLLIITGPNM 617 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GGKST++RQ ALI +MA +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E Sbjct: 618 GGKSTYMRQTALITLMAYIGSFVPAESALIGPIDRIFTRIGASDDLASGRSTFMVEMTEM 677 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 A+IL+QA S V++DEIGRGT+T DGLS+AWA E+L + R L ATH+ ELT L + Sbjct: 678 ANILHQAGANSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKLRSLTLFATHYFELTVLPE 737 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 L N L + + I F+H V G A SYG+ V LAG+P V+ A L E Sbjct: 738 QLAGTANVHLDALEHGDSIAFMHAVQDGAASKSYGLAVAALAGVPKNVVKLAKQKLANLE 797 Query: 841 KLYHHNQ----KDMRLYYPEIQTKESKNNL-----SKNDKLFVEKIKCLNLDEMSPLTAL 891 KL + +D+R I + + NL KN L E + L+ D++SP AL Sbjct: 798 KLSQQSADQKLQDLR----TINQNQGELNLMEEEDGKNAAL--EMLAQLDPDDLSPKQAL 851 Query: 892 KTLYAVK 898 LY +K Sbjct: 852 AYLYQLK 858 >gi|145220133|ref|YP_001130842.1| DNA mismatch repair protein [Prosthecochloris vibrioformis DSM 265] gi|189083175|sp|A4SFT1|MUTS_PROVI RecName: Full=DNA mismatch repair protein mutS gi|145206297|gb|ABP37340.1| DNA mismatch repair protein MutS [Chlorobium phaeovibrioides DSM 265] Length = 874 Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust. Identities = 291/825 (35%), Positives = 462/825 (56%), Gaps = 26/825 (3%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K +PMMRQY+++K D L+ +R+GDFYE FFDDA S + I LT+R DIP Sbjct: 10 KELSPMMRQYLDVKKQYADYLLLFRVGDFYETFFDDAATISAAVNIVLTRRSNGSAPDIP 69 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M G P H + YI +L++ G ++A+CEQ+E P EAK +V+R + +VTPG D Sbjct: 70 MAGFPYHASEGYIARLVRKGFKVAVCEQVEDPAEAK-----GIVKREITEIVTPGVTYSD 124 Query: 143 QLLSPTDSNYLMAVARI---RTEWA-IAWIDISTGIFKISTSNHDRLISDIMRIDPREII 198 +L +NYL AVA + RT A IA++D++T F+I++ L I+ + P E++ Sbjct: 125 SILEDRHNNYLAAVAFLKEGRTPVAGIAYLDVTTAEFRIASLPPHSLRDTILSLGPAELL 184 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 S E S E G + + F +E+ ++ + ++ FG ++ + Sbjct: 185 VSSSEKSRLEDLVRGYATGMLVTGLDDWMFSEEQAETVLSRQFRTHSLKGFGIEGNRAGR 244 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQSLLK 316 AA + Y+ +T+ + I + +D + NLEI+ ++ GS SLL+ Sbjct: 245 VAAGVVLQYLDETRQSRRAYITRISEMQGGEFMTLDLQTKRNLEIVSSMQDGSPHGSLLQ 304 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D ++ G RL + PL + I R D + +Q+ L ++ L D+ R Sbjct: 305 VMDRTVNPMGARLIRRWLQRPLRVAEAIAERHDGVEELLQSSELSEGVRCSLSEINDLER 364 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 SL+R+ R P+++ + + + +L L L LR L+ LP+ L + Sbjct: 365 SLARIATFRTSPREVLQMGRSLAVFPQLRDLLLPA-LSARLRSLAAVLQPLPE-LVSEIE 422 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + + RDGG++R G + LDE RS+ +K + +Q + E+T I +LK+++N Sbjct: 423 RSVDPECGATVRDGGYIRSGCNDELDELRSVSSMAKERLMDIQREEREKTGISSLKVQYN 482 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+IE++ ++ + + ++ +QT+ N R+T L E +I NA +L Sbjct: 483 RVFGYYIEISRANLDRVPEG------YMKKQTLVNAERYTIPALKAYEEKILNAEERSLR 536 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E E F+ L +I E++ S+ ++ IA ID + A+ AKE YC+P + ++ + Sbjct: 537 LEAEIFQALCASIAERAASIQESALAIAEIDTLASFALSAKEYGYCKPEMKEHEGLLITE 596 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP++E+ +K +PF+ NDC ++ ++TGPNM GKS++LRQ LIV++ Sbjct: 597 GRHPVLERIMK--PDEPFVKNDCHFD-----GQQRMLMITGPNMAGKSSYLRQTGLIVLL 649 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ GS+VPA A IG+VD++F+RVG++DNLASG STF+VEM E ASILN AT+ S ++LD Sbjct: 650 AQAGSFVPAERAEIGMVDRIFTRVGASDNLASGESTFLVEMNEAASILNNATSSSLILLD 709 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DG+SIAW+ EY+ R L ATH+HEL++L + L N V +S Sbjct: 710 EIGRGTSTFDGMSIAWSMSEYIITRLGARTLFATHYHELSELEERLPGVVNYNATVVESG 769 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 E +IFL K++ G D+SYGI+V ++AG+PN VI RA +I+ E+ Sbjct: 770 ERVIFLRKIVRGSTDNSYGIEVARMAGMPNEVIERAREIMSGLER 814 >gi|317493948|ref|ZP_07952365.1| DNA mismatch repair protein MutS [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918275|gb|EFV39617.1| DNA mismatch repair protein MutS [Enterobacteriaceae bacterium 9_2_54FAA] Length = 852 Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust. Identities = 318/893 (35%), Positives = 485/893 (54%), Gaps = 62/893 (6%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 NL S TPMM+QY+++K+ +PD L+FYRMGDFYELF+DDA AS+ + I+LTKRG G+ Sbjct: 6 NLDSHTPMMQQYLKLKAQHPDILLFYRMGDFYELFYDDAKRASQLMDISLTKRGASAGEP 65 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM G+P H +Y+ KL+++G +AICEQI P K V R VVR+VTPGT++ Sbjct: 66 IPMAGIPHHAVENYLAKLVQLGESVAICEQIGDPAT-----TKGPVERKVVRIVTPGTIS 120 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIF 199 ++ LL N L A+ + + A +DIS+G F+++ ++ + + +++ R +P E+++ Sbjct: 121 DEALLKERQDNLLAAIWQDARGFGFATLDISSGRFRVAEPADLETMAAELQRTNPAELLY 180 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK-T 258 E S A L E + +P F+ + ++ + ++ FG + Sbjct: 181 PEDFASMA----LIENRRGLR-RRPLWEFELDTARQQLNLQFGTRDLNGFGVEQATQALR 235 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA + Y+K TQ P I E Q + +D+A R NLE+ + LSG E +L + Sbjct: 236 AAGCLLQYVKDTQRTTLPHIRGITIERQQDGIIMDAATRRNLELTQNLSGGVENTLAAIL 295 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D ++T G R+ + P D +N R +I P L++ +Q +L+ D+ R L Sbjct: 296 DCTVTPMGSRMLKRWVHMPSRDHKALNNRQQAIEAL--QP-LVDDLQPLLRQVGDLERIL 352 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE-----ELRGAVEKLKKLPQSLEK 433 +RL + P+D+A +R + I L + P E G E+L++L Sbjct: 353 ARLALRTARPRDLARMRYAFQQLPEIQALIGGHATPHIAKLAEQAGQFEELREL------ 406 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + + P RDGG + G + LDE R+L D + + L+++ E+ + LK+ Sbjct: 407 -LERAVVETPPVLVRDGGVIAPGYNDELDEWRALADGATDYLDRLEIREREKLGLDTLKV 465 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GY+I+V+ + ++ ++ RQT+ N R+ EL + E+++ + Sbjct: 466 GFNGVHGYYIQVSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSKGK 519 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E +E L + ++ L ++ +A +D+ LA A NY RP + + Sbjct: 520 ALALEKRLYEELFDLLLPHLADLQQSATALAELDVLSNLAERADTLNYVRPELSDKAGIK 579 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + GRHP+VE+ LK+ PFIAN LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 580 IVGGRHPVVEQVLKE----PFIANPLSLSPQR-----RMLVITGPNMGGKSTYMRQAALI 630 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 V+MA +GS+VPA A IG VD++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V Sbjct: 631 VLMAHIGSFVPAEKAVIGPVDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLV 690 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + L+ +N L Sbjct: 691 LMDEIGRGTSTYDGLSLAWACAENLASRIKAMTLFATHYFELTTLPEKLEGVYNVHLDAL 750 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 + + I F+H V G A SYG+ V LAG+P VI RA LK E L Sbjct: 751 EHGDTIAFMHSVQDGAASKSYGLAVAALAGVPRDVIKRARQKLKELETL----------- 799 Query: 854 YPEIQTKESKNNLSKNDKL-------FVEKIKCLNLDEMSPLTALKTLYAVKA 899 QT S+ + S+ L VE ++ L+ D ++P AL LY +K Sbjct: 800 --SAQTGNSQIDGSQLQLLAEPESSPAVEALEELDPDTLTPRQALDWLYRLKG 850 >gi|150003763|ref|YP_001298507.1| DNA mismatch repair protein MutS [Bacteroides vulgatus ATCC 8482] gi|319640015|ref|ZP_07994742.1| DNA mismatch repair protein mutS [Bacteroides sp. 3_1_40A] gi|189030698|sp|A6KZM1|MUTS_BACV8 RecName: Full=DNA mismatch repair protein mutS gi|149932187|gb|ABR38885.1| putative DNA mismatch repair protein MutS [Bacteroides vulgatus ATCC 8482] gi|317388293|gb|EFV69145.1| DNA mismatch repair protein mutS [Bacteroides sp. 3_1_40A] Length = 870 Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust. Identities = 317/885 (35%), Positives = 498/885 (56%), Gaps = 40/885 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+Q+ E+K+ +PD+++ +R GDFYE + +DA++AS LGITLTKR K + M G Sbjct: 8 TPMMKQFFELKAKHPDAIMLFRCGDFYETYSEDAIVASEILGITLTKRANGQAKSVEMAG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KL++ G R+AIC+Q+E P KK LV+R + LVTPG D +L Sbjct: 68 FPFHALDTYLPKLVRAGKRVAICDQLEDPKMTKK-----LVKRGITELVTPGVAINDNVL 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF--SEKE 203 S ++N+L AV + +A++DISTG F + D + + P+E++F ++ Sbjct: 123 SYKENNFLAAVHFGKASCGVAFLDISTGEFLTAEGPFDYIDKLLNNFAPKEVLFERGKRG 182 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + + S F T + F+ S S ++ ++ + FG A+ A Sbjct: 183 MFEGNFGSKFFTF-----ELDDWVFNESSSREKLLKHFETKNLKGFGVEHLKNGIVASGA 237 Query: 264 I-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 I Y+ TQ I R + + +D +LE++ +++ SLL ID +I Sbjct: 238 ILQYLNMTQHYQIGHITSLSRIEEDRYVRLDKFTVRSLELIGSMNEGG-TSLLDVIDRTI 296 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 + G RL + PL D +N RLD + +F + P I++ L D+ R +S+ Sbjct: 297 SPMGARLLKRWVVFPLKDEKPVNERLDVVEYFFREPDFKEFIEEKLHLIGDLERIVSKAA 356 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 +GR P+++ ++ +++ I N L D LR E+L L S+ + ++ + +D Sbjct: 357 VGRISPREVVQLKVALQAIEPIKNACLNAD-NGSLRRIGEQLN-LCLSIREKIAKEVKND 414 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P GG + DG +A LDE R + K + +Q + +E T I +LKI +NN GY+ Sbjct: 415 PPLLVNKGGVIADGVNAELDELRQIAFSGKDYLLKVQQRESELTGIPSLKIAYNNVFGYY 474 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IEV ++ + D +I +QT+ N R+ T EL + E +I A + L++E + + Sbjct: 475 IEVRNTHKDKVPAD------WIRKQTLVNAERYITQELKEYEEKILGAEDKILVLETKLY 528 Query: 563 EILSNAIIEQSESLD-NASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 L A+ E ++ NASQ IA +D +A A +AKE NY RP++++S ++ GRHP+ Sbjct: 529 NELVVALAEFIPAIQINASQ-IARLDCLLAFANVAKENNYIRPVVEDSEVIDIRQGRHPV 587 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 +EK L + +IAND L D + ++ ++TGPNM GKS LRQ ALI ++AQMGS Sbjct: 588 IEKQLP--VGEKYIANDVFL----DSETQQIIIITGPNMAGKSALLRQTALITLLAQMGS 641 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA A IG+VDK+F+RVG++DN++ G STFMVEM E A+ILN +++S V+ DE+GRG Sbjct: 642 FVPAESARIGMVDKIFTRVGASDNISVGESTFMVEMNEAANILNNLSSRSLVLFDELGRG 701 Query: 742 TATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 T+T DG+SIAWA +E++HE + R L ATH+HEL ++ KS KR N + V + + + Sbjct: 702 TSTYDGISIAWAIVEHIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEIDNKV 761 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 IFL K+ G ++HS+GI V K+AG+P +++ RA DIL E + Q+ + EI + Sbjct: 762 IFLRKLERGGSEHSFGIHVAKMAGMPKSIVKRANDILHQLET--DNRQQGIAKPTAEIAS 819 Query: 860 KESKNNLS--KNDKLFVEKIK--CLNLD--EMSPLTALKTLYAVK 898 S LS + D + +I+ LNLD ++PL AL L +K Sbjct: 820 GRSGMQLSFFQLDDPVLSQIRDEILNLDVNNLTPLEALNKLNDIK 864 >gi|209363939|ref|YP_001424366.2| DNA mismatch repair protein MutS [Coxiella burnetii Dugway 5J108-111] gi|207081872|gb|ABS76827.2| DNA mismatch repair protein [Coxiella burnetii Dugway 5J108-111] Length = 871 Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust. Identities = 316/894 (35%), Positives = 491/894 (54%), Gaps = 67/894 (7%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 + + TPMMRQY+ IK+ PD LVFYRMGDFYELF+DDA A++ L ITLT RG+ G Sbjct: 23 QNDFSQHTPMMRQYLRIKAEYPDLLVFYRMGDFYELFYDDAKKAAKLLNITLTARGQSAG 82 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 IPM GVP H +Y+ KL+++G + ICEQI P +K V R V R++TPGT Sbjct: 83 HAIPMAGVPYHAVENYLTKLVRLGESVVICEQIGDPATSK-----GPVAREVTRIITPGT 137 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N LM + + + + IA +DI++G F I + + L ++I RI P E+ Sbjct: 138 VSDEALLDEHRDNTLMVIHQEKDRFGIATLDITSGRFLIQEIISENALFAEIERIRPAEL 197 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVE 256 + SE+ S+ + +P FDH+ + + + + ++D FG + + Sbjct: 198 LISEE-------NSVHPLKADSIKRRPPWEFDHATALTLLCQQFQTKSLDGFGITHLPLA 250 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 TAA + Y+ TQ P I + E + LFID+ R NLE++ L G SL Sbjct: 251 ITAAGCLLQYVNYTQKSALPHIHSIQAEQNEEALFIDANTRRNLELITNLQGEEVHSLAW 310 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D++ T G RL I PL D + R ++++ ++ + I + L+ D+ R Sbjct: 311 LLDHTATPMGSRLLRRWINRPLRDQILLQQRQNAVSTLLEKRNY-SEIYENLRHIGDLER 369 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGI------NILNLFLKNDLPEELRGAVEKLKKLPQS 430 ++R+ + P+D+ +R + G+ + NL L L +E++ + +L + Sbjct: 370 IVARIALRSARPRDLMQLRQAL--GVLPTLHQQLTNLPLNKQL-QEIKNNLGLFDELFRL 426 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L+K + ++ P RDGG + DG DA LDE R++ S + + L+ + E TKI Sbjct: 427 LQKAII----ENPPIVIRDGGVIADGYDAPLDELRNMSTNSHQFLIDLEQQERERTKINT 482 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ +N GY+IE++ + A ++ +I RQT+ N+ R+ T EL E+++ ++ Sbjct: 483 LKVGYNRIHGYYIEISRAQAK------QAPTEYIRRQTLKNVERYITPELKIFEDKVLSS 536 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 + AL E E +E L + +IE+ L + IA +D+ LA A N+ P + Sbjct: 537 RSRALAREKELYEQLLDTLIEKLIPLQQCASAIANLDVLNTLAERADTLNFNAPQFCDYP 596 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 ++ GRHPIVE + + PF+ ND L ++ ++TGPNMGGKST++RQ Sbjct: 597 IIKIEAGRHPIVENVM----TDPFMPNDTHLD-----EKRRMLIITGPNMGGKSTYMRQT 647 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI ++A +GS+VPA A +G +D++F+R+G+AD+LASGRSTFMVEM ETA+IL+ AT + Sbjct: 648 ALITLLAYIGSFVPAKNAQLGPIDRIFTRIGAADDLASGRSTFMVEMTETAAILHNATEE 707 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V++DE+GRGT+T DGLS+A+A YL + L ATH+ ELT L+ +L N L Sbjct: 708 SLVLMDEVGRGTSTFDGLSLAYACASYLATKLKAFALFATHYFELTALASTLPAVKNVHL 767 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM 850 + E IIFLH + G A+ SYG+QV +LAG+P +VI H QK Sbjct: 768 DAVEHEEKIIFLHALREGPANKSYGLQVAQLAGIPRSVIQ-------------HARQKLE 814 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVE-------KIKCLNLDEMSPLTALKTLYAV 897 L P I S+ + ++LF+ ++ LN D ++P AL LY + Sbjct: 815 ELENPVI----SETQQPQQNELFLPIENPVLTQLDKLNPDNLTPKQALDILYQL 864 >gi|190411083|gb|ACE78296.1| MutS [Vibrio parahaemolyticus] Length = 847 Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust. Identities = 309/884 (34%), Positives = 485/884 (54%), Gaps = 52/884 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 + TPMM+QY+++K+ NP+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IP Sbjct: 5 QKHTPMMQQYLKLKAENPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGSSAGEPIP 64 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+T++ Sbjct: 65 MAGVPFHAVEGYLAKLVQLGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTVTDE 119 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSE 201 LLS N + A+ ++ A +D+++G F+++ + +++++ R PRE++F E Sbjct: 120 ALLSERLDNLIAAIYHHNGKFGYATLDVTSGRFQLTEPETEEAMMAELQRTAPRELLFPE 179 Query: 202 KELSHAEYKSLFETLG-----NVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 FE + N +P F+ ++ ++ + + FG + + Sbjct: 180 D----------FEPVHLMSNRNGNRRRPVWEFELDTAKQQLNQQFGTRDLVGFGVEHASL 229 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA I Y+K TQ P I + ++ +D+A R NLEI + L+G + +L Sbjct: 230 GLCAAGCLIQYVKDTQRTALPHIRSLTFDRQDHSVILDAATRRNLEITQNLAGGTDNTLA 289 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D+ T G R+ + P+ +N RLD+I I++ L +Q LK D+ Sbjct: 290 AVLDHCSTPMGSRMLKRWLHQPMRCIDTLNNRLDAIGE-IKDQGLFTDLQPTLKQIGDIE 348 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 R L+RL + P+D+A +R ++ + L L + +L + ++ + LE+ Sbjct: 349 RILARLALRSARPRDMARLRHAMQQLPELESLTASLTHPYLVKLAQYAAPIDEVCELLER 408 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + ++ P RDGG + +G + LDE R L D + + L+ E I LK+ Sbjct: 409 AIK----ENPPVVIRDGGVIAEGYNEELDEWRKLADGATEYLEKLEADERERHGIDTLKV 464 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N G+FI+V+ + ++ ++ RQT+ N R+ EL + E+++ N+ + Sbjct: 465 GYNAVHGFFIQVSRGQSHLVPP------HYVRRQTLKNAERYIIPELKEHEDKVLNSKSK 518 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E + +E L + ++ E + N + ++ +D+ LA A +YCRP + Sbjct: 519 ALALEKKLWEELFDLLMPHLEQMQNLASAVSQMDVLQNLAERADSLDYCRPTLVKDAGIH 578 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 ++ GRHP+VE Q +S PFIAN +LS +S K+ ++TGPNMGGKST++RQ ALI Sbjct: 579 IQAGRHPVVE----QVTSDPFIANPIELS-----SSRKMLIITGPNMGGKSTYMRQTALI 629 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V Sbjct: 630 ALMAHIGSYVPAESAQIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLV 689 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA+ E+L L ATH+ ELT+L L N L Sbjct: 690 LMDEIGRGTSTYDGLSLAWASAEWLATQIGAMTLFATHYFELTELPNLLPNLANVHLDAV 749 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 + + I F+H V G A SYG+ V LAG+P TVI A L E+L + Sbjct: 750 EHGDSIAFMHAVQEGAASKSYGLAVAGLAGVPKTVIKNARTKLSQLEQLGQASDS----- 804 Query: 854 YPEIQTKESKNNLS--KNDKLFVEKIKCLNLDEMSPLTALKTLY 895 P T + N LS + + ++ D+++P AL+ LY Sbjct: 805 -PRPSTVDIANQLSLIPEPSEIEQALSNIDPDDLTPRQALEELY 847 >gi|289626001|ref|ZP_06458955.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651483|ref|ZP_06482826.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. aesculi str. 2250] gi|330868575|gb|EGH03284.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 859 Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust. Identities = 313/887 (35%), Positives = 488/887 (55%), Gaps = 46/887 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L S TPMM+QY ++K+ + D L+FYRMGDFYE+F++DA A++ L ITLT RG+ G+ Sbjct: 7 DLSSHTPMMQQYWKLKNQHLDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQS 66 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCG+P H A Y+ KL+K+G + ICEQI P +K V R VVR++TPGT++ Sbjct: 67 IPMCGIPYHAAEGYLAKLVKLGESVVICEQIGDPAT-----SKGPVDRQVVRIITPGTIS 121 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIF 199 ++ LL N + AV + +A +DI++G F + + L++++ RI+P E++ Sbjct: 122 DEALLDERRDNLIAAVLGDERLFGLAVLDITSGNFSVLEIKGWENLLAELERINPVELLI 181 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 + + L A + F+ + + ++ + FG + Sbjct: 182 PDDW-----PQGLPAEKRRGARRRAPWDFERDSAHKSLCQQFSTQDLKGFGCENLTLAIG 236 Query: 260 AAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA + SY K+TQ P + E + T+ +D+A+R NLE+ LSG R+ +L + Sbjct: 237 AAGCLLSYAKETQRTALPHLRSLRHERLDDTVILDAASRRNLELDTNLSGGRDNTLQSVM 296 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D T G RL + PL D T + R SI F++ N +Q LK D+ R L Sbjct: 297 DRCQTAMGTRLLTRWLNRPLRDLTILQARQTSITCFLERYRFEN-LQPQLKEIGDIERIL 355 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 +R+ + P+D+A +RD + S + L + + L+ + P +L L Sbjct: 356 ARIGLRNARPRDLARLRDAL-SALPELQQAMTDLEAPHLQQLAQTASTYP-ALADLLQRA 413 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + D+ P RDGG L+ G DA LD+ +SL + + + + L+ + T + NLK+ +N Sbjct: 414 IIDNPPAVIRDGGVLKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLANLKVGYNRV 473 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GYFIE+ S A D +I RQT+ RF T EL + E++ +A + AL E Sbjct: 474 HGYFIELPSKQAEQAPAD------YIRRQTLKGAERFITPELKEFEDKALSAKSRALARE 527 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 +E L +I L + + +A +D+ LA A + P ++ GR Sbjct: 528 KMLYEALLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLDLNCPRFVAEPCMRIEQGR 587 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ L S PF+AND L +S ++ ++TGPNMGGKST++RQ ALIV++A Sbjct: 588 HPVVEQVL----STPFVANDLALD-----DSTRMLVITGPNMGGKSTYMRQTALIVLLAH 638 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V++DE+ Sbjct: 639 IGSFVPAGSCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEV 698 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGLS+AWA E L + R L ATH+ ELT L +S N L ++ NE Sbjct: 699 GRGTSTFDGLSLAWAAAECLAQL-RAYTLFATHYFELTVLPESEPLVTNVHLNATEHNER 757 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 I+FLH+V+PG A SYG+ V +LAG+P VI+RA + L+ E L + + + Sbjct: 758 IVFLHRVLPGPASQSYGLAVAQLAGVPGKVITRAKEHLQRLET--------TSLPHEQPR 809 Query: 859 TKESKNNLSKNDKLF-------VEKIKCLNLDEMSPLTALKTLYAVK 898 K K + + +F ++++ + +D+M+P AL LY ++ Sbjct: 810 AKPGKPAVPQQSDMFASLPHPVLDELSKVKVDDMTPRQALDLLYTLQ 856 >gi|189030712|sp|A9KG24|MUTS_COXBN RecName: Full=DNA mismatch repair protein mutS Length = 859 Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust. Identities = 316/894 (35%), Positives = 491/894 (54%), Gaps = 67/894 (7%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 + + TPMMRQY+ IK+ PD LVFYRMGDFYELF+DDA A++ L ITLT RG+ G Sbjct: 11 QNDFSQHTPMMRQYLRIKAEYPDLLVFYRMGDFYELFYDDAKKAAKLLNITLTARGQSAG 70 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 IPM GVP H +Y+ KL+++G + ICEQI P +K V R V R++TPGT Sbjct: 71 HAIPMAGVPYHAVENYLTKLVRLGESVVICEQIGDPATSK-----GPVAREVTRIITPGT 125 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N LM + + + + IA +DI++G F I + + L ++I RI P E+ Sbjct: 126 VSDEALLDEHRDNTLMVIHQEKDRFGIATLDITSGRFLIQEIISENALFAEIERIRPAEL 185 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVE 256 + SE+ S+ + +P FDH+ + + + + ++D FG + + Sbjct: 186 LISEE-------NSVHPLKADSIKRRPPWEFDHATALTLLCQQFQTKSLDGFGITHLPLA 238 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 TAA + Y+ TQ P I + E + LFID+ R NLE++ L G SL Sbjct: 239 ITAAGCLLQYVNYTQKSALPHIHSIQAEQNEEALFIDANTRRNLELITNLQGEEVHSLAW 298 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D++ T G RL I PL D + R ++++ ++ + I + L+ D+ R Sbjct: 299 LLDHTATPMGSRLLRRWINRPLRDQILLQQRQNAVSTLLEKRNY-SEIYENLRHIGDLER 357 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGI------NILNLFLKNDLPEELRGAVEKLKKLPQS 430 ++R+ + P+D+ +R + G+ + NL L L +E++ + +L + Sbjct: 358 IVARIALRSARPRDLMQLRQAL--GVLPTLHQQLTNLPLNKQL-QEIKNNLGLFDELFRL 414 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L+K + ++ P RDGG + DG DA LDE R++ S + + L+ + E TKI Sbjct: 415 LQKAII----ENPPIVIRDGGVIADGYDAPLDELRNMSTNSHQFLIDLEQQERERTKINT 470 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ +N GY+IE++ + A ++ +I RQT+ N+ R+ T EL E+++ ++ Sbjct: 471 LKVGYNRIHGYYIEISRAQAK------QAPTEYIRRQTLKNVERYITPELKIFEDKVLSS 524 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 + AL E E +E L + +IE+ L + IA +D+ LA A N+ P + Sbjct: 525 RSRALAREKELYEQLLDTLIEKLIPLQQCASAIANLDVLNTLAERADTLNFNAPQFCDYP 584 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 ++ GRHPIVE + + PF+ ND L ++ ++TGPNMGGKST++RQ Sbjct: 585 IIKIEAGRHPIVENVM----TDPFMPNDTHLD-----EKRRMLIITGPNMGGKSTYMRQT 635 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI ++A +GS+VPA A +G +D++F+R+G+AD+LASGRSTFMVEM ETA+IL+ AT + Sbjct: 636 ALITLLAYIGSFVPAKNAQLGPIDRIFTRIGAADDLASGRSTFMVEMTETAAILHNATEE 695 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V++DE+GRGT+T DGLS+A+A YL + L ATH+ ELT L+ +L N L Sbjct: 696 SLVLMDEVGRGTSTFDGLSLAYACASYLATKLKAFALFATHYFELTALASTLPAVKNVHL 755 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM 850 + E IIFLH + G A+ SYG+QV +LAG+P +VI H QK Sbjct: 756 DAVEHEEKIIFLHALREGPANKSYGLQVAQLAGIPRSVIQ-------------HARQKLE 802 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVE-------KIKCLNLDEMSPLTALKTLYAV 897 L P I S+ + ++LF+ ++ LN D ++P AL LY + Sbjct: 803 ELENPVI----SETQQPQQNELFLPIENPVLTQLDKLNPDNLTPKQALDILYQL 852 >gi|167619450|ref|ZP_02388081.1| DNA mismatch repair protein [Burkholderia thailandensis Bt4] Length = 893 Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust. Identities = 313/901 (34%), Positives = 472/901 (52%), Gaps = 43/901 (4%) Query: 13 SEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTK 72 S+Q E + TPMM+QY+ IK +P++LVFYRMGDFYELFF+DA A+R L +TLT+ Sbjct: 11 SKQQLTEAAFSNHTPMMQQYLRIKVEHPETLVFYRMGDFYELFFEDAEKAARLLDLTLTQ 70 Query: 73 RGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVR 132 RG G I M GVP H Y+ KL+K G AICEQI P +K V R VVR Sbjct: 71 RGASAGTPIKMAGVPHHAVEQYLAKLVKFGESAAICEQIGDPAT-----SKGPVERKVVR 125 Query: 133 LVTPGTLTEDQLLSPTDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTSNHDRLI 186 +VTPGTLT+ LLS +L+A+ + + +AW+++++G +++ D+L Sbjct: 126 VVTPGTLTDAALLSDKSDVFLLALCVGHNKRGVASTIGLAWLNLASGALRLAEIAPDQLG 185 Query: 187 SDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITT 245 + + RI P EI+ ++ + G A+ + P FD + R+ D + + Sbjct: 186 AALERIRPAEILAADGAIEAV-------PAGTGAITRVPAWHFDIASGTQRLCDQLEVAS 238 Query: 246 VDTFGSFSQVEKTAAAAAIS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILR 304 +D FG+ + AA A+ Y TQ + + E+ + +D + R NLE+ Sbjct: 239 LDGFGAQALTSANGAAGALLIYAAATQGQQLRHVRSLKVENESEYIGLDPSTRRNLELTE 298 Query: 305 TLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILI--N 362 TL G+ +L +D T G RL + P S R +I + P+ + + Sbjct: 299 TLRGTESPTLYSLLDTCCTAMGSRLLRHWLHHPPRASVAAQARHQAIGTLLDAPVHVGLD 358 Query: 363 PIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELR-GAV 421 ++ L+ DV R RL + P+D++ +RD + + L + P G + Sbjct: 359 SLRSALRQIADVERITGRLALLSARPRDLSSLRDTF-AALPALRERVAEIAPNAAALGRL 417 Query: 422 EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLK 481 E + P L+ ++ + RDGG + G DA LDE R + + + + L+ + Sbjct: 418 EAALEPPPGCLDLLTRAIAPEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLETR 477 Query: 482 YAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELI 541 T I NL++++N G++IEVT + D + RQT+ N R+ T EL Sbjct: 478 ERARTGIPNLRVEYNKVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELK 531 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 E++ +A AL E ++ + A++ E + +A +D+ A A A+ ++ Sbjct: 532 TFEDKALSAQERALARERALYDSVLQALLPHIEGCQRVASGLAELDLLAAFAERARTLDW 591 Query: 602 CRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 P + + GRHP+VE ++Q FIANDC L+ +D+ KL L+TGPNMG Sbjct: 592 VAPEFIDEIGIEIDQGRHPVVEAQVEQ-----FIANDCALN--SDR---KLLLITGPNMG 641 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKSTF+RQ ALI +MA +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A Sbjct: 642 GKSTFMRQTALIALMAYVGSYVPAKAARFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAA 701 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS 781 +ILN AT QS V++DEIGRGT+T DGL++AWA +L NRC L ATH+ ELT L Sbjct: 702 AILNDATPQSLVLMDEIGRGTSTFDGLALAWAIARHLLSHNRCYTLFATHYFELTQLPAE 761 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 + N L + GI+FLH V G A+ SYG+QV +LAG+P VI A L E+ Sbjct: 762 FPQAANVHLSAVEHGHGIVFLHAVEEGPANQSYGLQVAQLAGVPAPVIRAARKHLAHLEQ 821 Query: 842 LYHHN---QKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 Q D+ P + +E + +E++ L+ D++ P AL LY ++ Sbjct: 822 QSAAQATPQLDLFAAQPIVDEQECNEPPAAAPHPALERLLALDPDDLKPRDALDLLYELR 881 Query: 899 A 899 A Sbjct: 882 A 882 >gi|157369078|ref|YP_001477067.1| DNA mismatch repair protein MutS [Serratia proteamaculans 568] gi|167012383|sp|A8G9Z9|MUTS_SERP5 RecName: Full=DNA mismatch repair protein mutS gi|157320842|gb|ABV39939.1| DNA mismatch repair protein MutS [Serratia proteamaculans 568] Length = 851 Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust. Identities = 315/884 (35%), Positives = 486/884 (54%), Gaps = 45/884 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 + L S TPMM+QY+ +K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 DKLDSHTPMMQQYLRLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H +Y+ KL+++G +A+CEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGVPHHAVENYLAKLVQLGESVALCEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 T++ LL N L A+ + + A +DIS+G F+++ ++ + + +++ R +P E++ Sbjct: 120 TDEALLQERQDNLLAAIWQDARGFGYATLDISSGRFRVAEPADIETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + E E SL E + +P F+ + ++ + + FG Q + Sbjct: 180 YPET----FEQMSLIEQRHGLR-RRPLWEFEPETARQQLNLQFGTRDLTGFG-VEQAHQA 233 Query: 259 --AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 AA + Y+K TQ + P I E Q + +D+A R NLE+ + LSG E +L Sbjct: 234 LRAAGCLLQYVKDTQRTSLPHIRGITMERQQDGIIMDAATRRNLELTQNLSGGSENTLAA 293 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D S+T G R+ + P D +N R +I +Q+ L + +Q L+ D+ R Sbjct: 294 ILDRSVTAMGSRMLKRWLHMPTRDIKVLNNRQQAIGS-LQD--LYSDLQPSLRQVGDLER 350 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKT 434 L+RL + P+D+A +R + +I L + P ++L V + +L LE+ Sbjct: 351 ILARLALRSARPRDLARMRHAFQQLPDIHALLKGVETPYVQQLLSQVGQFDELQDLLERA 410 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + + P RDGG + G ++ LDE R+L D + + L+++ E+ + LK+ Sbjct: 411 VV----EAPPVLVRDGGVIAPGYNSELDEWRALADGATDYLDRLEIREREKLGLDTLKVG 466 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N GY+I+V+ + ++ ++ RQT+ N R+ EL + E+++ + A Sbjct: 467 FNGVHGYYIQVSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSKGKA 520 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L IE +E L + ++ L ++ +A +D+ LA A+ NY P I + Sbjct: 521 LAIEKGLYEELFDLLLPHLGDLQQSAAALAELDVLANLAERAETLNYACPTISEQPGVRI 580 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 +GRHP+VE+ L S+PFI+N LS ++ ++TGPNMGGKST++RQ ALIV Sbjct: 581 TEGRHPVVEQVL----SEPFISNPLSLSPQR-----RMLIITGPNMGGKSTYMRQTALIV 631 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 +MA +GSYVPAS A IG VD++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V+ Sbjct: 632 LMAHIGSYVPASKAVIGPVDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVL 691 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 692 MDEIGRGTSTYDGLSLAWACAENLASRIKAMTLFATHYFELTTLPEKMEGVVNVHLDALE 751 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 + I F+H V G A SYG+ V LAG+P VI RA L+ E + H Sbjct: 752 HGDTIAFMHSVQDGAASKSYGLAVAALAGVPREVIKRARQKLRELEAISSHTATG----- 806 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 L++ VE ++ L+ D +SP AL+ +Y +K Sbjct: 807 --TVDATQMTLLNEETSPAVEALEALDPDSLSPRQALEWIYRLK 848 >gi|300855302|ref|YP_003780286.1| putative DNA mismatch repair protein MutS [Clostridium ljungdahlii DSM 13528] gi|300435417|gb|ADK15184.1| predicted DNA mismatch repair protein MutS [Clostridium ljungdahlii DSM 13528] Length = 891 Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust. Identities = 309/833 (37%), Positives = 481/833 (57%), Gaps = 53/833 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+E+K D ++F+R+GDFYE+FF+DA +ASR L + LT R L + PMCG Sbjct: 4 TPMMQQYMEVKESYKDCILFFRLGDFYEMFFEDAKIASRELELVLTGRDCGLKERAPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H AN YI +LI G++IAICEQ+E P AK +V+R ++++VTPGT T+ L Sbjct: 64 IPYHAANSYIGRLINKGYKIAICEQLEDPALAK-----GIVKRGIIKVVTPGTYTDSTFL 118 Query: 146 SPTDSNYLMAVARIRTEW---AIAWIDISTGIFKISTS--NHDRLISDIMRIDPREIIFS 200 +NY+ A I T+ A+ + D+STG F + + N ++ +I + P EI+ Sbjct: 119 EENKNNYI-ACLYIDTQTNISALCFADVSTGEFNCTDTPFNLSTILDEISKYSPSEILIQ 177 Query: 201 E----------KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG 250 + K++ + L E+ A N+ D E+ + Y+ + G Sbjct: 178 DSISIDLLNKMKDIFSGSFTKLDESY--FAGETKNMLEDQF--ENFTGENYSNEIIKCCG 233 Query: 251 SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGS 309 S + YI++TQ + I +I L ID +R NLEI +L + Sbjct: 234 SL-----------LKYIRETQKNDLSHINKFSYYNIVDYLTIDGNSRRNLEITESLRENN 282 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 ++ SLL ID + T GGR + PL + KI RLDS+ N +++ LK Sbjct: 283 KKGSLLWVIDKTNTSMGGRQLRRWLEQPLINKVKIEERLDSVEEISNNISYHEDLKEALK 342 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 + D+ R + ++ K++ +++ I I + L N + L+ E L +L + Sbjct: 343 NIYDIERLVGKISSKSVNAKELNFLKNSIEK-IPEVKSILSNFHTKLLKYMYENLDEL-K 400 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 + L + D+ ++G ++ G ++ +DE + ++ K IASL+ E TKIK Sbjct: 401 DIYVLLDKSILDNPAISLKEGNLIKKGYNSDIDELKEIKAHGKEWIASLENSEREVTKIK 460 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 +LKI +N GY+IEVT S+ +++ + R+I +QT++N R+ T EL ++E++I Sbjct: 461 SLKIGYNKVFGYYIEVTKSNLNLV-----PEGRYIRKQTLTNAERYITPELKEMEDKILG 515 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 A + +E F + + I + + + ++++I+ +D +LA +A E NYC+P I NS Sbjct: 516 AEEKLINLEYSVFIEVRDKIEIEVDRMQKSAKIISEVDCLSSLARVAIENNYCKPKITNS 575 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 N I+++GRHP+VEK + S FI+ND ++ D +L L+TGPNM GKST++RQ Sbjct: 576 DNIIIEEGRHPVVEKMI---DSGEFISNDINI----DTGKNQLLLITGPNMAGKSTYMRQ 628 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALIVIMAQ+GS+VPA A I + DK+F+R+G++D+LASG+STFMVEM E ++IL ATN Sbjct: 629 IALIVIMAQIGSFVPAKNASISVCDKIFTRIGASDDLASGKSTFMVEMWEVSNILKNATN 688 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHN 787 +S ++LDE+GRGT+T DGLSIAW+ IEY+ + + +C+ L ATH+HELT L + N Sbjct: 689 KSLILLDEVGRGTSTYDGLSIAWSVIEYICKNSKLKCKTLFATHYHELTKLEGKIDGVKN 748 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + V + + I+FL K+I G AD SYGI+V KLAGLP V+ RA +IL + E Sbjct: 749 YCVSVKEMEDNIVFLRKIIRGGADQSYGIEVAKLAGLPEEVLKRAGEILNSLE 801 >gi|330504209|ref|YP_004381078.1| DNA mismatch repair protein MutS [Pseudomonas mendocina NK-01] gi|328918495|gb|AEB59326.1| DNA mismatch repair protein MutS [Pseudomonas mendocina NK-01] Length = 855 Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust. Identities = 312/885 (35%), Positives = 489/885 (55%), Gaps = 42/885 (4%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L + TPMM+QY ++K+ +PD L+FYRMGDFYE+F++DA A++ L ITLT RG+ G+ Sbjct: 3 DLSAHTPMMQQYWKLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQS 62 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCG+P H+ Y+ KL+K+G + ICEQI P +K V R VVR++TPGT++ Sbjct: 63 IPMCGIPFHSVEGYLAKLVKLGESVVICEQIGDPAT-----SKGPVERQVVRIITPGTIS 117 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSN-HDRLISDIMRIDPREIIF 199 ++ LL N L AV + +A +DI++G F + N + L++++ R++P E++ Sbjct: 118 DEALLDEHRDNLLAAVLGDERLFGLAVLDITSGRFSVQEINGWENLLAELERLNPAELLI 177 Query: 200 SE--KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 + + AE + G+ A + FD + + + + FG + Sbjct: 178 PDDWPQGLPAEKRK-----GSRRRAPWD--FDRDSAFKSLCQQFGTQDLKGFGCENLTLA 230 Query: 258 TAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 AA + SY K+TQ P + E + T+ +D A+R NLE+ L+G R+ +L Sbjct: 231 IGAAGCLLSYAKETQRTALPHLRSLRHERLDDTVILDGASRRNLELDINLAGGRDNTLQS 290 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D T RL + PL D + R D+I + +Q LK D+ R Sbjct: 291 VMDRCQTAMASRLLGRWLNRPLRDRAVLEARQDAIACLLDG-YRFETLQPQLKEIGDLER 349 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 L+R+ + P+D+A +RD + + + D P L+ + P+ L + L+ Sbjct: 350 ILARIGLRNARPRDLARLRDALAALPELQQEMASLDTPH-LQQLATTIATYPE-LAELLA 407 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + D+ P RDGG L+ G DA LDE +++ + + + + L+ + T + NLK+ +N Sbjct: 408 RAIIDNPPAVIRDGGVLKTGYDAELDELQAMSENAGQFLMDLEAREKARTGLANLKVGYN 467 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GYFIE+ + A D +I RQT+ RF T EL + E++ +A + AL Sbjct: 468 RVHGYFIELPTKQAESAPAD------YIRRQTLKGAERFITPELKEFEDKALSAKSRALA 521 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 E ++ L +I L +++ +A +D+ LA A + RP + + Sbjct: 522 REKMLYDELLEKLIGHLAPLQDSAAALAELDVLSNLAERALNLDLNRPRFVDEPCMRINQ 581 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE+ L + PF+AND DL + ++ ++TGPNMGGKST++RQ ALIV++ Sbjct: 582 GRHPVVEQVL----TTPFVANDLDLD-----DHRRMLIITGPNMGGKSTYMRQTALIVLL 632 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A +GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ A+ +S V++D Sbjct: 633 AHIGSFVPAAACELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNASERSLVLMD 692 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 E+GRGT+T DGLS+AW+ E+L R L ATH+ ELT L +S N L ++ N Sbjct: 693 EVGRGTSTFDGLSLAWSAAEHLARL-RAFTLFATHYFELTVLPESEPVVANVHLSATEHN 751 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--KLYHHNQKDMRLYY 854 E I+FLH V PG A SYG+ V +LAG+P TVISRA + L E L H D+ Sbjct: 752 ERIVFLHHVQPGPASQSYGLAVAQLAGVPGTVISRAREHLARLEATSLPH----DLPRQE 807 Query: 855 P-EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P + Q + + +E++ +N D+++P AL+ LYA K Sbjct: 808 PGQPQVPMQSDLFASVPHPLIEQLHKINPDDLTPRKALELLYAWK 852 >gi|319775449|ref|YP_004137937.1| DNA mismatch repair protein MutS [Haemophilus influenzae F3047] gi|317450040|emb|CBY86254.1| DNA mismatch repair protein MutS [Haemophilus influenzae F3047] Length = 861 Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust. Identities = 312/889 (35%), Positives = 495/889 (55%), Gaps = 44/889 (4%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 EEN + TPMM+QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG+ G Sbjct: 4 EENFQQHTPMMQQYLKLKAENPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGQSAG 63 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM G+P H Y+ KL+++G +AICEQI P +K V R +VR+VTPGT Sbjct: 64 QPIPMAGMPYHAVEGYLAKLVQLGESVAICEQIGDP-----TTSKGPVERQIVRIVTPGT 118 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N + AV + + ++ +A +D+++G F++ ++ + L +++ RI P E+ Sbjct: 119 VSDEALLPERQDNLIAAVYQEKEKFGLATLDMTSGRFQLCEPADKETLRAELQRIAPVEL 178 Query: 198 IFSEK--ELSHAEY-KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 ++ E+ E++ E+ K L +P F+ S + + + + + FG Sbjct: 179 LYCEEFNEMAAIEHCKGLRR--------RPIWEFELSTAITLLNHQFGTKDLRAFG---- 226 Query: 255 VEKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS 309 VEK+ AA + Y K+TQ P I Q + +D A R NLE+ + L+G Sbjct: 227 VEKSPLGLSAAGCLLQYAKETQRTALPHIQSISLIQNQDCIQLDVATRRNLELTQNLAGG 286 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 E +L +D +T G RL I P+ D K+ R +I + N L++ +Q L+ Sbjct: 287 TENTLASVLDKCVTPMGSRLLKRWIHQPVRDVEKLKQRQQAIAEIL-NFDLVDELQPYLQ 345 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 D+ R L+R+ + P+D+ +R + I L ++ P L ++ + Sbjct: 346 LVGDMERILARVALRSARPRDLTRLRTALEQ-IPALRAIVQQKTPPFLTALFSQIADFSE 404 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 + L L + P RDGG + +G LDE R L D + + + +L+ + E T I Sbjct: 405 QCD-LLQRALIETPPLLIRDGGVIAEGYHTELDEWRMLSDGATQYLENLEKRERESTGID 463 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LKI N GY+I+++ A ++ ++ RQT+ N R+ EL + E+++ Sbjct: 464 TLKIGFNAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKEYEDKVLK 517 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 + +AL +E + ++ L + ++ +L AS ++ +D+ + LA A NY P + Sbjct: 518 SKGAALALEKQLYDELFDLLLPHLGALQLASLALSELDVLVNLAERADTLNYVMPTFCDE 577 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 + +++GRHP+VE+ LK PFIAN +L+ ++ L ++TGPNMGGKST++RQ Sbjct: 578 VSVKIENGRHPVVEQVLK----DPFIANPVELN-----HNRHLLVITGPNMGGKSTYMRQ 628 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI ++A +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT Sbjct: 629 TALITLLAYIGSFVPADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATA 688 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 QS V++DEIGRGT+T DGLS+AWA E+L + R L ATH+ ELT L + L+ N Sbjct: 689 QSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLEGIANIH 748 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 L + N I F+H V G A SYG+ V LAG+P +VI A L EK ++ ++ Sbjct: 749 LDALEHNNTIAFMHAVQDGAASKSYGLAVAALAGVPQSVIKLAKQKLTQLEKNSSYSVEE 808 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E + + + E I+ L+ D++SP AL LY +K Sbjct: 809 QIQALREANHNQGELLFEQETDALREAIEKLDPDDLSPKQALAYLYQLK 857 >gi|239618478|ref|YP_002941800.1| DNA mismatch repair protein MutS [Kosmotoga olearia TBF 19.5.1] gi|239507309|gb|ACR80796.1| DNA mismatch repair protein MutS [Kosmotoga olearia TBF 19.5.1] Length = 823 Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust. Identities = 301/821 (36%), Positives = 470/821 (57%), Gaps = 38/821 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 KS TPMMRQY+EIK D ++ +R+GDFYE FF+DA + S L + LT R H P Sbjct: 4 KSLTPMMRQYLEIKEKYKDCILLFRLGDFYETFFEDARVISEELQLVLTSRNGH-----P 58 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H + Y++KLI G+++AIC+Q+E P AK LV+R V R++TPGTL ED Sbjct: 59 MAGVPYHALDQYVKKLISAGYKVAICDQVEDPATAK-----GLVKREVTRVITPGTLIED 113 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIM-RIDPREIIFSE 201 LLS ++N++ AV+ + + DISTG +++ + D++ R P ++I +E Sbjct: 114 DLLSSEENNFIAAVSEEKGVFPFVIADISTGDVAVTSCESLSDLKDVLYRTAPSQLIMNE 173 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 K K + L NV + + F +S S + +Y + ++D S E Sbjct: 174 K--LKPLKKEITGELSNVFLEFLEEWHFAYSSSVEYVKRFYELASIDAL-EISSAEIIVL 230 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 A YI+ TQ + P +++D++ NL IL + R SL +T+ Sbjct: 231 GALFKYIEMTQFKPMKHLSLPRVLRRSGYMYLDASTIENLSILPS---ERRGSLYQTLKA 287 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 ++T GGR E + +PL D KI RLD + F +P+L+ +++ L+ + D+ R SR Sbjct: 288 TVTSMGGRKLKEWLLNPLKDLGKIERRLDIVEAFYSDPLLLEELREYLRQAFDIERISSR 347 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 L GR P+D+ +R ++ I L ND+ + +E L + K L + +S Sbjct: 348 LATGRAIPRDLQALRTTLQVLPLIKELLYSNDVLSVIAEDIE----LFEEERKLLEASIS 403 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D+ +G +R G LDE L + S+ + +L+ ++T I NLK+K+N G Sbjct: 404 DEPAAAPGEGKVIRRGYSEELDELMDLLEHSQDKMKEFELRERQKTGINNLKVKYNKVFG 463 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 YFIEV+ S + D +I +QT+ N R+ T EL + E+++ +A+ ++E Sbjct: 464 YFIEVSKGQVSRVPDD------YIRKQTLVNSERYITPELKEFEDKVLSASERVAVLERA 517 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 +E + + + A ++A +D+ + A +AK+ Y RP+ ++ V+ RHP Sbjct: 518 LYEDICQKLSNSVQRFRKAGGLLAELDVLQSFATVAKKCGYTRPVFSSNHTSYVEAARHP 577 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE +K F+ ND ++K+S ++LTGPNM GKST++RQ ALI +MAQ+G Sbjct: 578 VVEHYVKD-----FVPNDIQF---DEKHS--FYILTGPNMSGKSTYIRQVALISLMAQVG 627 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA A + + D++F+R+G+ D++A G+STF+VEM+ETA+IL+QAT S V+LDE+GR Sbjct: 628 SFVPAKRAILPVYDRIFTRIGARDDVAGGKSTFLVEMMETATILSQATEDSLVVLDEVGR 687 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GT+T DG+SIAWA EY++E C + ATHF ELT+LS+ + +N T++V + +G+I Sbjct: 688 GTSTFDGISIAWAVSEYIYEAIGCHTIFATHFTELTELSQMYEGINNKTIEVREIEDGVI 747 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 FLHKV+ G+A S+GI V KLAGLP+ V+ RA +ILK K Sbjct: 748 FLHKVVDGVASQSHGIDVAKLAGLPDIVLQRAREILKIIVK 788 >gi|83647899|ref|YP_436334.1| DNA mismatch repair protein MutS [Hahella chejuensis KCTC 2396] gi|83635942|gb|ABC31909.1| DNA mismatch repair protein MutS [Hahella chejuensis KCTC 2396] Length = 882 Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust. Identities = 316/889 (35%), Positives = 494/889 (55%), Gaps = 57/889 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ IK+ +P LVFYRMGDFYELF++DA A+ L ITLT+RG+ G+ IPM G Sbjct: 35 TPMMQQYLGIKAKHPHQLVFYRMGDFYELFYEDARRAAELLDITLTQRGQSGGQPIPMAG 94 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A YI +L+++G + ICEQ+ P +K V R VVR+VTPGTL+++ L Sbjct: 95 VPFHAAEGYIGRLVRLGESVVICEQVGDPA-----ASKGPVERKVVRVVTPGTLSDEAFL 149 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKEL 204 N L+A++ + + +A +DI+ G F I + L S++ R+ P EI+ SE+ Sbjct: 150 EEKSDNLLLAISAYKDLFGLATLDIAGGRFLIQEVRGVEALASELQRLRPAEILVSEQ-- 207 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYY---NITTVDTFGSFSQVEKTAAA 261 + +L E V QP +F+ ++ + + ++ D G + +E AA Sbjct: 208 --FPFLTLLENYTGVQ-KQPPWYFEQETAQRLLCQQFRTKDLAGFDCEGMSAAIE--AAG 262 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 Y ++TQ P I RE + ++ +D+A+R NLEI L+G +L +D S Sbjct: 263 CLFQYAQETQRSQLPHIRTMIRERREDSIILDAASRRNLEIDVNLAGDYRHTLAWVMDKS 322 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G R+ + PL ++ R ++I +++ + + LK D R LSR+ Sbjct: 323 ATAMGSRMLRRWLNRPLRSQEEVRQRQNAIKELLED-YQFEALHETLKQIGDSERILSRV 381 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEE--------LRGAVEKLKKLPQSLEK 433 + P+D+A +RD L L DL ++ LR +++ + P + Sbjct: 382 ALRSARPRDLARLRD---------TLTLLPDLQKQMEELNDTHLRRLAKQVSEFP-DIAD 431 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 LS + ++ P RDGG LR G D LDE RS+ + + + ++ + E T++ +LK+ Sbjct: 432 LLSRAIEENPPVVIRDGGVLRQGFDEELDELRSISENAGDYLLEIEKREKERTQLSSLKV 491 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GYFIE++ + + D +I RQT+ N RF T EL E++ +A + Sbjct: 492 GYNRVHGYFIELSRTQSDQAPAD------YIRRQTLKNAERFITPELKTFEDKALSAKSR 545 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL E ++ + I+EQ L ++++ ++ +D+ A A N P + + Sbjct: 546 ALSREKMLYDQILETIVEQLAPLQDSARALSELDVLSNFAERALTLNLVCPDLTDEHMLH 605 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 ++ GRHP+VE Q S PF+ ND +L DK+ ++ ++TGPNMGGKST++RQ A I Sbjct: 606 IEGGRHPVVE----QVSQDPFVPNDLNL---QDKH--RMLIITGPNMGGKSTYMRQTACI 656 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 VI+A GS+VPA+ IG +D++F+R+GS+D++A GRSTFMVEM ETA+IL+ AT QS V Sbjct: 657 VILAYCGSFVPAAKVVIGPIDRVFTRMGSSDDIAGGRSTFMVEMTETANILHYATRQSLV 716 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DE+GRGT+T DGLS+AWA E+L + L ATH+ ELT L K+ N L + Sbjct: 717 LMDEVGRGTSTFDGLSLAWACAEHLAREIQAFTLFATHYFELTALPKTHANVANVHLTAT 776 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 + N+ I+FLH V G A SYGIQV +LAG+P VI++A LK E ++ + Sbjct: 777 EHNDSIVFLHTVHEGPASKSYGIQVAQLAGVPPQVINQAQKQLKQLES--GASKPALTAP 834 Query: 854 YPEIQTKESKNNLSKNDKLFVE-KIKCLNLDEMSPLTALKTLYAVKAWT 901 P +Q + ++ + VE +++ L++D +SP AL LY +K + Sbjct: 835 APSLQ----DDLFARVEPSEVETRLQKLDVDSLSPREALNMLYELKTMS 879 >gi|190411093|gb|ACE78301.1| truncated MutS [Vibrio parahaemolyticus] Length = 848 Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust. Identities = 309/885 (34%), Positives = 483/885 (54%), Gaps = 54/885 (6%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 + TPMM+QY+++K+ NP+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IP Sbjct: 5 QKHTPMMQQYLKLKAENPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGSSAGEPIP 64 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+T++ Sbjct: 65 MAGVPFHAVEGYLAKLVQLGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTVTDE 119 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSE 201 LLS N + A+ ++ A +D+++G F+++ + +++++ R PRE++F E Sbjct: 120 ALLSERIDNLIAAIYHHNGKFGYATLDVTSGRFQLTEPETEEAMMAELQRTAPRELLFPE 179 Query: 202 KELSHAEYKSLFETLG-----NVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 FE + N +P F+ ++ ++ + + FG + + Sbjct: 180 D----------FEPVHLMSNRNGNRRRPVWEFELDTAKQQLNQQFGTRDLVGFGVEHASL 229 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA I Y+K TQ P I + ++ +D+A R NLEI + L+G + +L Sbjct: 230 GLCAAGCLIQYVKDTQRTALPHIRSLTFDRQDHSVILDAATRRNLEITQNLAGGTDNTLA 289 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D+ T G R+ + P+ +N RLD+I I++ L +Q LK D+ Sbjct: 290 AVLDHCSTPMGSRMLKRWLHQPMRCIDTLNNRLDAIGE-IKDQGLFTDLQPTLKQIGDIE 348 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT- 434 R L+RL + P+D+A +R ++ + +L P + KL + +++ Sbjct: 349 RILARLALRSARPRDMARLRHAMQQLPELESLTASLTHP-----YLVKLAQFAAPIDEVC 403 Query: 435 --LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 L + ++ P RDGG + +G + LDE R L D + + L+ E I LK Sbjct: 404 ELLERAIKENPPVVIRDGGVIAEGYNEELDEWRKLADGATEYLEKLEADERERHGIDTLK 463 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 + +N G+FI+V+ + ++ ++ RQT+ N R+ EL + E+++ N+ + Sbjct: 464 VGYNAVHGFFIQVSRGQSHLVPP------HYVRRQTLKNAERYIIPELKEHEDKVLNSKS 517 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 AL +E + +E L + ++ E + N + ++ +D+ LA A +YCRP + Sbjct: 518 KALALEKKLWEELFDLLMPHLEQMQNLASAVSQMDVLQNLAERADSLDYCRPTLVKDAGI 577 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 ++ GRHP+VE Q +S PFIAN +LS S K+ ++TGPNMGGKST++RQ AL Sbjct: 578 HIQAGRHPVVE----QVTSDPFIANPIELS-----PSRKMLIITGPNMGGKSTYMRQTAL 628 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 I +MA +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S Sbjct: 629 IALMAHIGSYVPAESAQIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSL 688 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 V++DEIGRGT+T DGLS+AWA+ E+L L ATH+ ELT+L L N L Sbjct: 689 VLMDEIGRGTSTYDGLSLAWASAEWLATQIGAMTLFATHYFELTELPNLLPNLANVHLDA 748 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 + + I F+H V G A SYG+ V LAG+P TVI A L E+L + Sbjct: 749 VEHGDSIAFMHAVQEGAASKSYGLAVAGLAGVPKTVIKNARTKLSQLEQLGQASDS---- 804 Query: 853 YYPEIQTKESKNNLS--KNDKLFVEKIKCLNLDEMSPLTALKTLY 895 P T + N LS + + ++ D+++P AL+ LY Sbjct: 805 --PRPSTVDVANQLSLIPEPSEIEQALSNIDPDDLTPRQALEELY 847 >gi|237747536|ref|ZP_04578016.1| DNA mismatch repair protein mutS [Oxalobacter formigenes OXCC13] gi|229378898|gb|EEO28989.1| DNA mismatch repair protein mutS [Oxalobacter formigenes OXCC13] Length = 892 Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust. Identities = 331/894 (37%), Positives = 492/894 (55%), Gaps = 51/894 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ IK+ +PD L+FYRMGDFYELFFDDA+ AS+ LGITLT+R GK+I M G Sbjct: 22 TPMMQQYLRIKAEHPDMLLFYRMGDFYELFFDDAVTASKILGITLTQRAT-TGKNIAMAG 80 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H + Y+ KLI G +AICEQI P +K V R VVR+VTPGTLT+ LL Sbjct: 81 IPFHALDQYLAKLIATGESVAICEQIGDPA-----ASKGPVERKVVRIVTPGTLTDSNLL 135 Query: 146 SPTDSNYLMAVA----RIRTEWAIAWIDISTGIFKISTSNHD------RLISDIMRIDPR 195 L+AV R + +AW+ +S+G K+ D RL ++ RI Sbjct: 136 PEKADRPLLAVNCLKNRKQLTLGMAWLSLSSGSLKLLDVTVDEKYLPARLQQELERIGAA 195 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQV 255 EI+ ++ KSL + V P FD + + + N+ T+D FG Sbjct: 196 EILIAD-----GFDKSLLLNISGRIVTVPEWHFDQENGKKELIEQLNVITLDGFGVGDIN 250 Query: 256 EKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEI---LRTLSGSRE 311 A AI Y TQ N + E + +D+ R NLE+ +RT SG E Sbjct: 251 SALGACGAILKYAHTTQSQNLQHVRTLSVETEDDFITMDAMTRRNLELTEPIRTDSGRNE 310 Query: 312 Q-SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 +L +D+ T G RL I + + R +I + +I+ ++ IL + Sbjct: 311 SPTLFSELDHCRTSMGARLLRHWIHHASRNQSVARARHATITALTE-ACVIDGLRGILGN 369 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRS--GI-NILNLFLKNDLPEELRGAVEKLKKL 427 PD+ R +SR+ + P+D+A +R G++ G+ + L+ + +D L+ KL + Sbjct: 370 IPDIERIVSRIALYSARPRDLAALRYGLQQLPGLRSYLDQCVMDDGASLLKEIHRKLT-V 428 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 P + L ++D+ RDGG + G LDE RSL D + + + L+ + T Sbjct: 429 PAACLDLLEHAINDEPAAMIRDGGVIAGGFSPELDELRSLADNAGQFLVDLEARERARTG 488 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 I NL++++N G++IEVT S + D + RQT+ N R+ T EL E+++ Sbjct: 489 ITNLRVEYNRVHGFYIEVTQGQVSKVPDD------YRRRQTLKNTERYITPELKAFEDKV 542 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP-II 606 +A AL +E +E L ++ L ++ A +D+ ALA+ A++QN+ RP + Sbjct: 543 LSARERALALEKSLYEKLLQDLVIHISPLQEIARNTAKLDVLSALALHAQKQNWIRPELT 602 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 D+S IV+ GRHP++E +++ FIANDC+LS N+ K L+TGPNMGGKST+ Sbjct: 603 DDSVIHIVQ-GRHPVIENRIER-----FIANDCELS-----NNKKFLLITGPNMGGKSTY 651 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ ALIV++A +GS+VPA IG +D++F+R+G+AD+LA GRSTFMVEM E A+ILN Sbjct: 652 MRQTALIVLLAYIGSFVPADQVVIGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILNG 711 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT S V++DEIGRGT+T DGL++AWA +L E++R L ATH+ ELT L ++ Sbjct: 712 ATENSLVLMDEIGRGTSTFDGLALAWAIANHLIESSRSFTLFATHYFELTQLPETCPTAE 771 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN 846 N L + + I+FLH V PG A SYG+QV KLAG+P VI A L E + Sbjct: 772 NVHLSAVEHKDNIVFLHSVEPGPASQSYGLQVAKLAGVPANVIRVARKHLAELESHFMPG 831 Query: 847 QKDMRL--YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + L Y P + +E+ + + + +E + L+ D +SP AL+ LY++K Sbjct: 832 KDQLSLFSYTPSTEPEETTSEIFEQFSPVIEMLDELDPDSLSPREALEQLYSLK 885 >gi|161831167|ref|YP_001596673.1| DNA mismatch repair protein MutS [Coxiella burnetii RSA 331] gi|189030765|sp|A9NCN3|MUTS_COXBR RecName: Full=DNA mismatch repair protein mutS gi|161763034|gb|ABX78676.1| DNA mismatch repair protein MutS [Coxiella burnetii RSA 331] Length = 859 Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust. Identities = 315/894 (35%), Positives = 492/894 (55%), Gaps = 67/894 (7%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 + + TPMMRQY+ IK+ PD LVFYRMGDFYELF+DDA A++ L ITLT RG+ G Sbjct: 11 QNDFSQHTPMMRQYLRIKAEYPDLLVFYRMGDFYELFYDDAKKAAKLLNITLTARGQSAG 70 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 IPM GVP H +Y+ KL+++G + ICEQI P +K V R V R++TPGT Sbjct: 71 HAIPMAGVPYHAVENYLTKLVRLGESVVICEQIGDPATSK-----GPVAREVTRIITPGT 125 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N LM + + + + IA +DI++G F I + + L ++I RI P E+ Sbjct: 126 VSDEALLDEHRDNTLMVIHQEKDRFGIATLDITSGRFLIQEIISENALFAEIERIRPAEL 185 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVE 256 + SE+ S+ + +P FDH+ + + + + ++D FG + + Sbjct: 186 LISEE-------NSVHPLKADSIKRRPPWEFDHATALTLLCQQFQTKSLDGFGITHLPLA 238 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 TAA + Y+ TQ P I + E + LFID+ R NLE++ L G SL Sbjct: 239 ITAAGCLLQYVNYTQKSALPHIHSIQAEQNEEALFIDANTRRNLELITNLQGEEVHSLAW 298 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D++ T G RL I PL D + R ++++ ++ + I + L+ D+ R Sbjct: 299 LLDHTATPMGSRLLRRWINRPLRDQILLQQRQNAVSTLLEKRNY-SEIYENLRHIGDLER 357 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGI------NILNLFLKNDLPEELRGAVEKLKKLPQS 430 ++R+ + P+D+ +R + G+ + NL L L +E++ + +L + Sbjct: 358 IVARIALRSARPRDLMQLRQAL--GVLPTLHQQLTNLPLNKQL-QEIKNNLGLFDELFRL 414 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L+K + ++ P RDGG + DG DA LDE R++ S + + L+ + E TKI Sbjct: 415 LQKAII----ENPPIVIRDGGVIADGYDAPLDELRNMSTNSHQFLIDLEQQERERTKINT 470 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 +K+ +N GY+IE++ + A ++ +I RQT+ N+ R+ T EL E+++ ++ Sbjct: 471 VKVGYNRIHGYYIEISRAQAK------QAPTEYIRRQTLKNVERYITPELKIFEDKVLSS 524 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 + AL E E +E L + +IE+ L + IA +D+ LA A N+ P + Sbjct: 525 RSRALAREKELYEQLLDTLIEKLIPLQQCASAIANLDVLNTLAERADTLNFNAPQFCDYP 584 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 ++ GRHPIVE + + PF+ ND L ++ ++TGPNMGGKST++RQ Sbjct: 585 IIKIEAGRHPIVENVM----TDPFMPNDTHLD-----EKRRMLIITGPNMGGKSTYMRQT 635 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI ++A +GS+VPA A +G +D++F+R+G+AD+LASGRSTFMVEM ETA+IL+ AT + Sbjct: 636 ALITLLAYIGSFVPAKNAQLGPIDRIFTRIGAADDLASGRSTFMVEMTETAAILHNATEE 695 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V++DE+GRGT+T DGLS+A+A YL + L ATH+ ELT L+ +L+ N L Sbjct: 696 SLVLMDEVGRGTSTFDGLSLAYACASYLATKLKAFALFATHYFELTALASTLQAVKNVHL 755 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM 850 + E IIFLH + G A+ SYG+QV +LAG+P +VI H QK Sbjct: 756 DAVEHEEKIIFLHALREGPANKSYGLQVAQLAGIPRSVIQ-------------HARQKLE 802 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVE-------KIKCLNLDEMSPLTALKTLYAV 897 L P I S+ + ++LF+ ++ LN D ++P AL LY + Sbjct: 803 ELENPVI----SETQQPQQNELFLPIENPVLTQLDKLNPDNLTPKQALDILYQL 852 >gi|46446855|ref|YP_008220.1| DNA mismatch repair protein [Candidatus Protochlamydia amoebophila UWE25] gi|81697634|sp|Q6MBV4|MUTS_PARUW RecName: Full=DNA mismatch repair protein mutS gi|46400496|emb|CAF23945.1| putative DNA mismatch repair protein mutS [Candidatus Protochlamydia amoebophila UWE25] Length = 858 Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust. Identities = 307/838 (36%), Positives = 482/838 (57%), Gaps = 40/838 (4%) Query: 14 EQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR 73 EQ L+E+ +PMM Q+ K + D+++F+RMGDFYE F++DA L S+ L +TLTKR Sbjct: 16 EQHSLDES--KISPMMMQWHACKKMAGDAILFFRMGDFYEAFYEDAHLLSKELELTLTKR 73 Query: 74 GKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRL 133 ++IPM G+P HT+ YI KL+ G R+AI EQIE P + K LV+R VVR+ Sbjct: 74 -----QEIPMSGIPFHTSEGYIDKLVAKGFRVAIAEQIEDP-----KKTKGLVKREVVRV 123 Query: 134 VTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRI 192 V+PGT+ LLS ++N+ A+ ++ + +A++D++TG + +S +R L++++ R+ Sbjct: 124 VSPGTVINSSLLSDKNNNFFAALVKVGQIFGLAFLDLTTGEYWVSEFTQERELLNELYRL 183 Query: 193 DPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVF----FDHSISESRIADYYNITTVDT 248 P E + SEK ++ SLFE + N F+H + + +++ + +D Sbjct: 184 HPAEFLTSEK--FKEKHASLFEEMQQTYSFLVNTLEDWQFEHQQAHDFLINHFKVQRLDG 241 Query: 249 FGSFSQVEK-TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS 307 FG V AA A ++Y+++T + I + +D + NLE+ +L Sbjct: 242 FGLSGMVAAINAAGALLNYLQETLCLPIQHIQSIRCYSSSQFMMLDRMTQRNLELTHSLQ 301 Query: 308 -GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK 366 GSR +LL ID + T G RL + PL ++I+ R + I + + +++ +Q Sbjct: 302 DGSRRHTLLGVIDQTQTPMGARLMHHWVKQPLLKVSEIHQRQNGIQALLNHEHIVDQLQN 361 Query: 367 ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEE-LRGAVEKLK 425 + D+ R + ++ P+D+ + + I +L L ++P E + +KL Sbjct: 362 LFLQIKDIERLMMKVSACYATPRDLIALHFSFKPIAFIKSLLL--NIPSEWINEHAQKLD 419 Query: 426 KLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE 485 L + + +S+ + ++ P +G R G LDE R + SK +A Q + EE Sbjct: 420 PLSK-MNALISNAIVEEPPLRLGEGKTFRQGFHRELDELREISHDSKAWMARYQTQIREE 478 Query: 486 TKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 T IK LK+ N GYFIEV+ + D FI RQT+ N R+ T EL + E+ Sbjct: 479 TGIKTLKVGFNKMFGYFIEVSRGQIDKMP------DHFIRRQTLVNAERYITPELKEYES 532 Query: 546 RITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPI 605 ++ A IE E F L + ++++ +Q +A ID I+L +AK+ Y P+ Sbjct: 533 KVLTAEERINSIESELFHQLRLEVASYTKNVLEVAQALAKIDCLISLTNVAKKYCYTCPV 592 Query: 606 IDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKST 665 ID+S+ ++++GRHP++E + + FI ND L D + +L L+TGPNM GKST Sbjct: 593 IDDSSILVIEEGRHPVIETVCRHEK---FIPNDTYL----DDQANRLLLITGPNMAGKST 645 Query: 666 FLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILN 725 +LRQ ALIVI+AQ+GS+VPA+ AHIGI+DK+F+R+G++D+L+ G+STFMVEM ETA+ILN Sbjct: 646 YLRQVALIVILAQIGSFVPAAKAHIGIIDKVFTRIGASDDLSRGQSTFMVEMTETANILN 705 Query: 726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLK 783 AT+QS VILDEIGRGT+T DG+SIAW+ EYL T + + L ATH+ ELT L + + Sbjct: 706 NATSQSLVILDEIGRGTSTYDGISIAWSVAEYLLTTEKRMAKTLFATHYWELTKLEEKVP 765 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 N + V ++++ I FL K+I G D SYGI V +LAGLP V++R+ +IL+ E+ Sbjct: 766 GAVNYNVAVHEADDHITFLRKIIKGGTDKSYGIHVARLAGLPQAVLNRSKEILEHLEE 823 >gi|302342734|ref|YP_003807263.1| DNA mismatch repair protein MutS [Desulfarculus baarsii DSM 2075] gi|301639347|gb|ADK84669.1| DNA mismatch repair protein MutS [Desulfarculus baarsii DSM 2075] Length = 858 Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust. Identities = 307/888 (34%), Positives = 482/888 (54%), Gaps = 61/888 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM+RQY+E+K PD ++F+RMGDFYE+FF+DA+L S+ L I LT R K+ IPM G Sbjct: 5 TPMLRQYLEMKEQAPDCVLFFRMGDFYEVFFEDAVLCSKLLSIQLTSRDKNHPDPIPMAG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP YI ++I+ G+++A+C+QIE P R K LV+R + R+ TP T L Sbjct: 65 VPHRAVESYIAQMIEHGYKVAVCDQIEDP-----RAAKGLVKRAITRIETPAMFTSPDYL 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSEKEL 204 D+ YL A+ + +A +D+++G F+ S LI ++ R++P E++ +E + Sbjct: 120 PAKDNRYLAALCLVGGVAGLAHLDLASGEFRAASVEPGPPLIDELARLEPAELVLAESQQ 179 Query: 205 SHAEYKSLFET-----LGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 H L + N A P I R + + +T Sbjct: 180 DHPALAGLAQAGVEAARSNFAGRPPTPAQARQILGERFPGGAEAADNPALAAAAMAWQTL 239 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS-REQSLLKTI 318 A ++ Q + +G E + + +D+ AR NLE+ ++++G R+ SLL+ + Sbjct: 240 VA-----TRRCQPEHIEPLGLYE---VGGHMVLDATARRNLELYKSIAGGGRKGSLLQAV 291 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D +++ GGRL + + PL + ++ R +++ ++ + +++ L++ PDVPR + Sbjct: 292 DRTLSPMGGRLLKQWLGFPLLELERVEARHQAVDELTRDLAARDGLRQALEAMPDVPRLV 351 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGA--VEKLKKLPQSLEKTLS 436 R +G+ P+++A +R +R+ + P R A +E L+ L LE+ L+ Sbjct: 352 GRASLGQAGPRELAGLRQALRALPEVRRRLAGFAAPLLRRAAESLEGLEPLAVELERALA 411 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 S L DGG + +G D LD+ R L Q K IA+LQ ET I +LKI N Sbjct: 412 ESPSQAL----GDGGVIAEGFDQELDQLRQLGGQGKDWIAALQASLRAETGIGSLKIGFN 467 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+IEVT++ + + + FI +QT++ R+ T EL + E + A AL Sbjct: 468 RVFGYYIEVTTAHQA------KVPEHFIRKQTLATAERYFTPELKEKEAAVLGAEEKALE 521 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E F+ L + S L + + +A++D+ A A LA Q+Y RP++ + ++ Sbjct: 522 LERRLFDELRALVAAWSGRLMDCGRALAMVDVLAAWADLAVSQDYARPLMSQNGALCIEQ 581 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE+ L ++ F+ ND L D + ++ ++TGPNM GKST LRQ ALI ++ Sbjct: 582 GRHPVVEQML---AAGEFVPNDVLL----DDGAQQVIIITGPNMAGKSTILRQVALICLL 634 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ GS+VPA+ A + +VD++F+RVG+ D+LA GRSTFMVEM ETA IL AT +S V+LD Sbjct: 635 AQAGSFVPAARAELPLVDRVFTRVGAMDDLARGRSTFMVEMTETAQILKNATPRSLVVLD 694 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRG---LLATHFHELTDLSKSLKRFHNATLQVS 793 E+GRGT+T DGLS+AWA E LH+ RG L ATH+HELT+L+ L R N + V Sbjct: 695 EVGRGTSTFDGLSLAWAVAEALHDLQ-GRGVKTLFATHYHELTELADKLPRVRNYNVAVR 753 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 + ++FL ++ PG SYG+QV +LAGLP V+ RA ++L E + +R Sbjct: 754 EHRGEVVFLRRLAPGGVSRSYGLQVARLAGLPEDVLRRAREVLARLEG------EQVRAT 807 Query: 854 YPEIQTKESKNNLSKNDKLFVE-------KIKCLNLDEMSPLTALKTL 894 P +K + LFV +++ L+ + M+PL AL L Sbjct: 808 AP-----PAKAQGAAQLPLFVAAEHPALTRLRGLDPERMTPLEALAAL 850 >gi|220934456|ref|YP_002513355.1| DNA mismatch repair protein [Thioalkalivibrio sp. HL-EbGR7] gi|219995766|gb|ACL72368.1| DNA mismatch repair protein [Thioalkalivibrio sp. HL-EbGR7] Length = 862 Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust. Identities = 319/883 (36%), Positives = 487/883 (55%), Gaps = 46/883 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ IK+ +PD LVFYRMGDFYELF+DDA+ A+R L ITLTKRG+ G+ IPM G Sbjct: 13 TPMMQQYLGIKAQHPDILVFYRMGDFYELFYDDAIRAARLLDITLTKRGQSAGEPIPMAG 72 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH Y+ +LI++G +AICEQI P +K V R VVR+VTPGT+TE+ LL Sbjct: 73 VPVHAVESYLGRLIRLGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTVTEEALL 127 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSEKEL 204 N L+AV + IA +D+STG F++ + L ++ R++P E++ E + Sbjct: 128 EERRENLLVAVCGRENRFGIAALDVSTGRFRVLEVEGVEALAGELERLNPAELLLPEGQP 187 Query: 205 SHAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGS-FSQVEKTAAAA 262 + Q V+ F+ + + + ++ + FG + AA A Sbjct: 188 LPGTKRP--------GTRQRAVWHFEAEAARTLLTRHFGTRDLAGFGCEGLALATGAAGA 239 Query: 263 AISYIKKTQMVNKPTI---GYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 + Y++ TQM P I G RED + +D+A R NLE+ + L+G RE +L +D Sbjct: 240 LLQYVQDTQMSALPHINGLGVERRED---GIILDAATRRNLELTQNLAGGREHTLAAVLD 296 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL + I PL + RL ++ ++ + + L+ D+ R LS Sbjct: 297 ETATAMGSRLLSRWIHQPLRHRQDLEARLGAVAELLEGRGH-RALHERLRRIGDLERILS 355 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKTLSS 437 R+ +G P+D+ +RD + I L P E+L G+ + ++ L+ Sbjct: 356 RVALGSARPRDLVTLRDSLAVLPEIRGLLAGTGAPRLEQLAGSAGEHP----AVVDLLTR 411 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + + P RDGG + G D LDE R+L + + + L+ + E T I LK+ +N Sbjct: 412 AVIEQPPVLIRDGGVIAPGYDPELDELRALSGNADQFLVDLEARERERTGIHTLKVAYNR 471 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IE++ + A ++ D + RQT+ RF T EL E+++ +A AL Sbjct: 472 VHGYYIEISRAQAD------KAPDDYTRRQTLKGAERFITPELKAFEDKVLSARERALAR 525 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E +E L A++E +L +++ +A +D+ A A+ Y RP + ++ +++DG Sbjct: 526 EKALYEALLEALLEPLPALQRSAEALAELDVLACFAERAETLGYSRPELTDTPGMLIEDG 585 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ L + PF+AN L+ ++ ++ ++TGPNMGGKST++RQ ALIV+MA Sbjct: 586 RHPVVEQVLDE----PFVANGVQLA-----DARRMLVITGPNMGGKSTYMRQTALIVLMA 636 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GS+VPA +G VD++F+R+G++D+LASGRSTFMVEM E A+ILN AT S V++DE Sbjct: 637 HLGSFVPARRTVLGPVDRIFTRIGASDDLASGRSTFMVEMTEAANILNNATEHSLVLMDE 696 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGT+T DGLS+AWA E+L NR L ATH+ ELT L++ + N + + Sbjct: 697 IGRGTSTFDGLSLAWACAEHLARHNRAFTLFATHYFELTALAEQHEAIANVHIDAVEHGN 756 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL-YHHNQKDMRLYYPE 856 I+FLH V G A+ SYG+ V LAG+P VI +A L E+ D +L Sbjct: 757 RIVFLHAVKEGPANQSYGLHVAALAGVPAAVIKKARQRLAELERQNLAGGAADPQLGLFA 816 Query: 857 IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 S + L E ++ L+ D +SP AL+ +Y ++A Sbjct: 817 PTPPPSPAPDPSLEALR-EAVEDLDPDSLSPREALEVVYRLRA 858 >gi|149190609|ref|ZP_01868878.1| DNA mismatch repair protein [Vibrio shilonii AK1] gi|148835607|gb|EDL52575.1| DNA mismatch repair protein [Vibrio shilonii AK1] Length = 862 Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust. Identities = 317/893 (35%), Positives = 499/893 (55%), Gaps = 64/893 (7%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 + TPMM+QY+++K+ NPD L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IP Sbjct: 14 QKHTPMMQQYLKLKAENPDILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIP 73 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H Y+ KL+++G +AICEQ+ P +K V R VVR+VTPGT++++ Sbjct: 74 MAGVPFHAVEGYLAKLVQLGESVAICEQVGDPATSK-----GPVERRVVRIVTPGTVSDE 128 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSE 201 LLS N + A+ ++ A +DI++G F++ S + +++++ R P+E++F E Sbjct: 129 ALLSERLDNLIAAIYHQNGKFGYATLDITSGRFQLCEPSTEEAMLAELQRTAPKELLFPE 188 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT--- 258 +++ + E + N + ++ I +R T D G F VEK Sbjct: 189 ------DFEPV-ELMANRNGNRRRPIWEFEIDTARQQLNQQFGTKDLIG-FG-VEKCELG 239 Query: 259 --AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 AA I Y+K TQ P I ++ +D+A R NLE+ + LSG ++ +L + Sbjct: 240 LCAAGCLIQYVKDTQRTALPHIRSLTLVSQDQSVVLDAATRRNLELTQNLSGGQDNTLAE 299 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D++ T G R+ I P+ +N RLD+I+ Q+ L + LK D+ R Sbjct: 300 VLDHTATAMGSRMLKRWIHQPMRCIKTLNYRLDAISELKQD-ALYTELSPTLKQIGDIER 358 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEK-----LKKLPQ-- 429 L+RL + P+D+A +R S +N+L EL ++E L++L Q Sbjct: 359 ILARLALRSARPRDMARLR----SALNLL---------PELALSLETVAHPYLQQLAQYS 405 Query: 430 ----SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE 485 SL + L + ++ P RDGG + DG +A LDE R L + + + L+ + Sbjct: 406 APMDSLAELLERAIKENPPVVIRDGGVIADGYNAELDEWRDLANGATAYLEKLEHDERDR 465 Query: 486 TKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 I LK+ +NN G++I+V+ + ++ ++ RQT+ N R+ EL + E+ Sbjct: 466 HGIDTLKVGYNNVHGFYIQVSRGQSHLVPP------HYVRRQTLKNAERYIIPELKEHED 519 Query: 546 RITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPI 605 ++ N+ + AL IE + +E L + ++ Q E L N + ++ +D+ LA A+ +YCRP Sbjct: 520 KVLNSKSKALAIEKKLWEELFDLLLPQLEQLQNLASALSQLDVLQNLAERAESLDYCRPA 579 Query: 606 IDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKST 665 + + +++ GRHP+VE+ + + PFIAN L+ K+ ++TGPNMGGKST Sbjct: 580 LSENAGILIQGGRHPVVEQVMDE----PFIANPISLNPER-----KMLIITGPNMGGKST 630 Query: 666 FLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILN 725 ++RQ ALI +MA +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ Sbjct: 631 YMRQTALIALMAHIGSYVPAESAEIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILH 690 Query: 726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRF 785 AT S V++DEIGRGT+T DGLS+AWA+ E+L L ATH+ ELT++ L Sbjct: 691 NATENSLVLMDEIGRGTSTYDGLSLAWASAEWLATKVGAMTLFATHYFELTEMPNQLPHL 750 Query: 786 HNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH 845 N L + + I F+H V G A SYG+ V LAG+P VI A L E+L Sbjct: 751 ANVHLDAVEHGDSIAFMHAVQEGAASKSYGLAVAGLAGVPKAVIKNARQKLTQLEQL--- 807 Query: 846 NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 QK P++ + + + ++ E + ++ D+++P AL+ LY +K Sbjct: 808 GQKPTTNDSPQVDIANQLSLIPEPSEV-EEALAQIDPDDLTPRQALEELYRLK 859 >gi|7108493|gb|AAF36440.1|AF126491_1 mismatch repair system component MutS [Pseudomonas aeruginosa] Length = 855 Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust. Identities = 313/890 (35%), Positives = 487/890 (54%), Gaps = 52/890 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L TPMM+QY ++K +PD L+FYRMGDFYELF++DA A++ L ITLT RG+ GK Sbjct: 3 DLSQHTPMMQQYFKLKHQHPDQLMFYRMGDFYELFYEDAKKAAKLLDITLTARGQSGGKA 62 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM G+P H+A Y+ KL+K+G +AICEQI P +K V R VVR++TPGT++ Sbjct: 63 IPMAGIPFHSAEGYLAKLVKLGESVAICEQIGDPAT-----SKGPVERQVVRIITPGTVS 117 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIF 199 ++ LL N L A+ + +A +DI++G F + + L++++ R++P E++ Sbjct: 118 DEALLDERRDNLLAAILGDERLFGLAVLDITSGRFSVQEIKGWETLLAELERLNPAELLI 177 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + ++ V + + FD + + + + FG + Sbjct: 178 PD------DWPQGLPAEKRRGVRRRAPWDFDRDSAHKSLCQQFGTQDLKGFGCQNLTLAI 231 Query: 259 AAAAA-ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA ++Y K+TQ P + + + T+ +D A+R NLE+ LSG RE +L Sbjct: 232 GAAGCLLAYAKETQRTALPHLRSLRHDRLDDTVILDGASRRNLELDINLSGGRENTLQSV 291 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D T RL + + PL D + R +SI ++ N +Q LK D+ R Sbjct: 292 VDRCQTAMASRLMSRWLNRPLRDRAVLEARQESIACLLERYRFEN-LQPQLKEIGDLERI 350 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 L+R+ + P+D+A +RD + + ++ N + + P L+ + P+ L + L+ Sbjct: 351 LARIGLRNARPRDLARLRDALAALPDLQNAMTELEAP-HLQALATTIGTYPE-LAELLAK 408 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + D+ P RDGG ++ G DA LDE ++L + + + + L+ + T + NLK+ +N Sbjct: 409 AIIDNPPAVIRDGGVIKTGYDAELDELQALSENAGQFLMDLEAREKARTGLPNLKVGYNR 468 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GYFIE+ A D +I RQT+ RF T EL E++ +A + AL Sbjct: 469 IHGYFIELPRVQAEQAPAD------YIRRQTLKGAERFITPELKAFEDKALSAQSRALAR 522 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E +E L +I L +++ +A +D+ LA A + RP T ++ G Sbjct: 523 EKALYEELLERLIGHLAPLQDSASALAELDVLANLAERALNLDLNRPRFVEHTCLHIEQG 582 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ L+ PF+AND L ++ ++TGPNMGGKST++RQ ALIV++A Sbjct: 583 RHPVVEQVLE----TPFVANDLALDA-----DTRMLVITGPNMGGKSTYMRQTALIVLLA 633 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GS+VPA+ + + ++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V++DE Sbjct: 634 HIGSFVPAARCELSLAVRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDE 693 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 +GRGT+T DGLS+AWA E L T R L ATH+ ELT L +S N L ++ NE Sbjct: 694 VGRGTSTFDGLSLAWAAAEDLART-RAFTLFATHYFELTVLPESQPAVANVHLNATEHNE 752 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--KLYHHNQKDMRLYYP 855 I+FLH V+PG A SYG+ V +LAG+P VI RA + LK E L H P Sbjct: 753 RIVFLHHVLPGPASQSYGLAVAQLAGVPTPVIQRAREHLKRLETTSLPHE--------MP 804 Query: 856 EIQTKESKNNLSKNDKLF-------VEKIKCLNLDEMSPLTALKTLYAVK 898 Q+ + + + + LF ++++ +N D++SP AL LYA K Sbjct: 805 SQQSGKPASPMQSD--LFASLPHPVIDELSRINPDDISPRQALDLLYAWK 852 >gi|66044624|ref|YP_234465.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. syringae B728a] gi|81308440|sp|Q4ZWP5|MUTS_PSEU2 RecName: Full=DNA mismatch repair protein mutS gi|63255331|gb|AAY36427.1| MutS 1 protein [Pseudomonas syringae pv. syringae B728a] Length = 859 Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust. Identities = 315/889 (35%), Positives = 490/889 (55%), Gaps = 50/889 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L + TPMM+QY ++K+ + D L+FYRMGDFYE+F++DA A++ L ITLT RG+ G+ Sbjct: 7 DLSAHTPMMQQYWKLKNQHLDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQS 66 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCG+P H A Y+ KL+K+G + ICEQI P +K V R VVR++TPGT++ Sbjct: 67 IPMCGIPYHAAEGYLAKLVKLGESVVICEQIGDPATSK-----GPVDRQVVRIITPGTIS 121 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIF 199 ++ LL N + AV + +A +DI++G F + + L++++ RI+P E++ Sbjct: 122 DEALLDERRDNLIAAVLGDERLFGLAVLDITSGNFSVLEIKGWENLLAELERINPVELLI 181 Query: 200 SEKELSH--AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 + AE + G+ A + F+ + + + + FG + Sbjct: 182 PDDWPPGLPAEKRR-----GSRRRAPWD--FERDSAHKSLCQQFATQDLKGFGCENLTLA 234 Query: 258 TAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 AA + SY K+TQ P + E + T+ +D+A+R NLE+ LSG R+ +L Sbjct: 235 IGAAGCLLSYAKETQRTALPHLRSLRHERLDDTVILDAASRRNLELDTNLSGGRDNTLQS 294 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D T G RL + PL D T + R SI F++ N +Q LK D+ R Sbjct: 295 VMDRCQTAMGTRLLTRWLNRPLRDLTILQARQTSITCFLERYRFEN-LQPQLKEIGDIER 353 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 L+R+ + P+D+A +RD + + + D P L+ + P+ L L Sbjct: 354 ILARIGLRNARPRDLARLRDALSALPELQQAMSDLDAPH-LQQLAQTAGTYPE-LADLLQ 411 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + D+ P RDGG L+ G DA LD+ +SL + + + + L+ + T + NLK+ +N Sbjct: 412 RAIIDNPPAVIRDGGVLKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLGNLKVGYN 471 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GYFIE+ S A D +I RQT+ RF T EL + E++ +A + AL Sbjct: 472 RVHGYFIELPSKQAEQAPAD------YIRRQTLKGAERFITPELKEFEDKALSAKSRALA 525 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 E +E L +I L + + +A +D+ LA A + P ++ Sbjct: 526 REKMLYETLLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLDLNCPRFVAEPCMRIEQ 585 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE+ L S PF+AND L +S ++ ++TGPNMGGKST++RQ ALIV++ Sbjct: 586 GRHPVVEQVL----STPFVANDLALD-----DSTRMLVITGPNMGGKSTYMRQTALIVLL 636 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A +GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V++D Sbjct: 637 AHIGSFVPAASCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMD 696 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 E+GRGT+T DGLS+AWA E L + R L ATH+ ELT L +S N L ++ N Sbjct: 697 EVGRGTSTFDGLSLAWAAAECLAQL-RAYTLFATHYFELTVLPESEPLVTNVHLNATEHN 755 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 E I+FLH+V+PG A SYG+ V +LAG+P VISRA + L+ E L + + Sbjct: 756 ERIVFLHRVLPGPASQSYGLAVAQLAGVPGKVISRAKEHLQRLET--------TSLPHEQ 807 Query: 857 IQTKESKNNLSKNDKLF-------VEKIKCLNLDEMSPLTALKTLYAVK 898 + K K + + +F ++++ + +D+M+P AL LY ++ Sbjct: 808 PRAKPGKPAVPQQSDMFASLPHPVLDELSKVKVDDMTPRQALDLLYTLQ 856 >gi|86610157|ref|YP_478919.1| DNA mismatch repair protein MutS [Synechococcus sp. JA-2-3B'a(2-13)] gi|123500848|sp|Q2JIA6|MUTS_SYNJB RecName: Full=DNA mismatch repair protein mutS gi|86558699|gb|ABD03656.1| DNA mismatch repair protein MutS [Synechococcus sp. JA-2-3B'a(2-13)] Length = 884 Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust. Identities = 304/850 (35%), Positives = 457/850 (53%), Gaps = 55/850 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+ Y+E+K P +++ YR+GDFYE+FF DA SR L + LT R +PMCG Sbjct: 7 TPMMQHYVELKRQYPHAILLYRLGDFYEMFFQDAQRVSRELELVLTGREAGAIGRVPMCG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H + Y +L+ G+ +A+C+Q+E +AK LVRR V R++TPGT+ E++LL Sbjct: 67 IPYHAFDRYAAQLVAKGYALAVCDQMEPADQAK-----GLVRREVTRVITPGTVLEEELL 121 Query: 146 SPTDSNYLMAVARIR------TEWAIAWIDISTGIFKISTS-NHDRLISDIMRIDPREII 198 +NYL AV R++ W +A+ DISTG F + S ++L ++ R+ P E++ Sbjct: 122 QARQNNYLAAVVRLKGSKQAPCRWGLAYADISTGEFWVCQSEGQEQLEQELARLQPAEVL 181 Query: 199 FSEKE---LSHAEYKSLFETLG----NVAVAQPNVFFDHSISESRIADYYNITTVDTFGS 251 +E L + LG +P F+ +++ + Y + +++ G Sbjct: 182 LPTEEGLGLGLIRPGDPQKPLGLPNQYAYTLRPAEPFELAVARENLMQTYGLRSLEGLGC 241 Query: 252 FS-QVEKTAAAAAISYIKKTQMVNK----------------PTIGYPEREDIQSTLFIDS 294 + AA + Y+++T + P + P + L +D+ Sbjct: 242 EGLPLAVRAAGGLLHYLEETHSPQRCVAPKTLLQPSPQGGHPLLPPPRTYQLTDYLILDA 301 Query: 295 AARSNLEILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINF 353 R NLE+ +T+ G+ SLL +D+S T GGR + PL DS +I R D+I Sbjct: 302 QTRRNLELTQTIREGAFVGSLLWVLDHSRTAMGGRTLRRWLLQPLRDSEQIRLRQDTIQE 361 Query: 354 FIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKN 411 ++NP L + +L S D+ R +R+ G P+++ + + + L K Sbjct: 362 LLENPSLRARLGSLLDSLYDLERLANRVGSGTANPRELVALGSSLGKLPQLAELVGEAKT 421 Query: 412 DLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQS 471 L + L+ L L + +E TL P +GG +R G D LD R +Q Sbjct: 422 PLLQSLQQVDPALVDLGRRIEHTLLP----SPPPILTEGGLIRPGVDPELDRLRQQVEQD 477 Query: 472 KRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSN 531 ++ +A L+ + T I LK+ N GY++ ++ + A + K+ +I +QT++N Sbjct: 478 RQWVAQLEKSERDRTGIPTLKVGFNKAFGYYLSISRAKAHQVPKE------YIRKQTLTN 531 Query: 532 LTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIA 591 RF T EL + E RI A E E F L ++E++ +Q +A +D Sbjct: 532 EERFITPELKEKEARILTAQTDINQREYELFVQLRQEAGSRAEAIRQVAQTLAAVDALFG 591 Query: 592 LAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGK 651 LA +A +Q Y RP++ I+++GRHP+VEK+L Q F+ N L P+ + Sbjct: 592 LAEVAVQQGYTRPLLTTDRRLIIEEGRHPVVEKSLPQGL---FVPNSVQLGSPHGPD--- 645 Query: 652 LWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRS 711 L +LTGPNM GKST+LRQ LI I+AQMGS+VPA A +G+ D++F+R+G+ D+LA+G+S Sbjct: 646 LIVLTGPNMSGKSTYLRQIGLIQILAQMGSFVPARRAELGLCDRVFTRIGAVDDLATGQS 705 Query: 712 TFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATH 771 TFMVEM ETA+ILN A +S V+LDEIGRGTAT DGLSIAWA EYL R R + ATH Sbjct: 706 TFMVEMNETANILNHAGERSLVLLDEIGRGTATFDGLSIAWAVAEYLATQVRARTVFATH 765 Query: 772 FHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISR 831 +HEL L L N + V + + IIFLH+V PG AD SYGI+VG++AGLP VI R Sbjct: 766 YHELNQLETLLPNVANFQVVVKELQDRIIFLHQVQPGGADRSYGIEVGRMAGLPQPVIQR 825 Query: 832 AYDILKTFEK 841 A +L EK Sbjct: 826 AEQVLALVEK 835 >gi|294777418|ref|ZP_06742869.1| DNA mismatch repair protein MutS [Bacteroides vulgatus PC510] gi|294448486|gb|EFG17035.1| DNA mismatch repair protein MutS [Bacteroides vulgatus PC510] Length = 883 Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust. Identities = 316/885 (35%), Positives = 498/885 (56%), Gaps = 40/885 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+Q+ E+K+ +PD+++ +R GDFYE + +DA++AS LGITLTKR K + M G Sbjct: 21 TPMMKQFFELKAKHPDAIMLFRCGDFYETYSEDAIVASEILGITLTKRANGQAKSVEMAG 80 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KL++ G R+AIC+Q+E P KK LV+R + LVTPG D +L Sbjct: 81 FPFHALDTYLPKLVRAGKRVAICDQLEDPKMTKK-----LVKRGITELVTPGVAINDNVL 135 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF--SEKE 203 S ++N+L AV + +A++DISTG F + D + + P+E++F ++ Sbjct: 136 SYKENNFLAAVHFGKASCGVAFLDISTGEFLTAEGPFDYIDKLLNNFAPKEVLFERGKRG 195 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + + S F T + F+ S S ++ ++ + FG A+ A Sbjct: 196 MFEGNFGSKFFTF-----ELDDWVFNESSSREKLLKHFETKNLKGFGVEHLKNGIVASGA 250 Query: 264 I-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 I Y+ TQ I R + + +D +LE++ +++ SLL ID +I Sbjct: 251 ILQYLNMTQHYQIGHITSLSRIEEDRYVRLDKFTVRSLELIGSMNEGG-TSLLDVIDRTI 309 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 + G RL + PL D +N RLD + +F + P I++ L D+ R +S+ Sbjct: 310 SPMGARLLKRWVVFPLKDEKPVNERLDVVEYFFRKPDFKEFIEEKLHLIGDLERIVSKAA 369 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 +GR P+++ ++ +++ I N L D LR E+L + S+ + ++ + +D Sbjct: 370 VGRISPREVVQLKVALQAIEPIKNACLNAD-NGSLRRIGEQLN-ICLSIREKIAKEVKND 427 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P GG + DG +A LDE R + K + +Q + +E T I +LKI +NN GY+ Sbjct: 428 PPLLVNKGGVIADGVNAELDELRQIAFSGKDYLLKVQQRESELTGIPSLKIAYNNVFGYY 487 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IEV ++ + D +I +QT+ N R+ T EL + E +I A + L++E + + Sbjct: 488 IEVRNTHKDKVPAD------WIRKQTLVNAERYITQELKEYEEKILGAEDKILVLETKLY 541 Query: 563 EILSNAIIEQSESLD-NASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 L A+ E ++ NASQ IA +D +A A +AKE NY RP++++S ++ GRHP+ Sbjct: 542 NELVIALAEFIPAIQINASQ-IARLDCLLAFANVAKENNYIRPVVEDSEVIDIRQGRHPV 600 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 +EK L + +IAND L D + ++ ++TGPNM GKS LRQ ALI ++AQMGS Sbjct: 601 IEKQLP--VGEKYIANDVFL----DSETQQIIIITGPNMAGKSALLRQTALITLLAQMGS 654 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA A IG+VDK+F+RVG++DN++ G STFMVEM E A+ILN +++S V+ DE+GRG Sbjct: 655 FVPAESARIGMVDKIFTRVGASDNISVGESTFMVEMNEAANILNNLSSRSLVLFDELGRG 714 Query: 742 TATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 T+T DG+SIAWA +E++HE + R L ATH+HEL ++ KS KR N + V + + + Sbjct: 715 TSTYDGISIAWAIVEHIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEIDNKV 774 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 IFL K+ G ++HS+GI V K+AG+P +++ RA DIL E + Q+ + EI + Sbjct: 775 IFLRKLERGGSEHSFGIHVAKMAGMPKSIVKRANDILHQLET--DNRQQGIAKPTAEIAS 832 Query: 860 KESKNNLS--KNDKLFVEKIK--CLNLD--EMSPLTALKTLYAVK 898 S LS + D + +I+ LNLD ++PL AL L +K Sbjct: 833 GRSGMQLSFFQLDDPVLSQIRDEILNLDVNNLTPLEALNKLNDIK 877 >gi|238754525|ref|ZP_04615880.1| DNA mismatch repair protein mutS [Yersinia ruckeri ATCC 29473] gi|238707354|gb|EEP99716.1| DNA mismatch repair protein mutS [Yersinia ruckeri ATCC 29473] Length = 851 Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust. Identities = 320/885 (36%), Positives = 489/885 (55%), Gaps = 45/885 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +NL S TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 KNLDSHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H +Y+ KL+++G AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGVPYHAIENYLAKLVQLGESAAICEQIGDPAT-----SKGPVERKVVRIVTPGTV 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S S+ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDARGFGYATLDISSGRFRVSEPSDTETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + E E L E + +P F+ + ++ + + FG Q + Sbjct: 180 YPET----FEQMPLIEQRHGLR-RRPLWEFELDTARQQLNMQFGTHDLIGFG-VEQAHQA 233 Query: 259 --AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 AA + Y+K TQ + P I E Q + +D+A R NLE+ + LSG + +L Sbjct: 234 LRAAGCLLQYVKDTQRTSLPHIRGLTMERQQDGIIMDAATRRNLELTQNLSGGSDNTLAA 293 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D +T G R+ + P+ D + R +I +QN + +Q+ L+ D+ R Sbjct: 294 ILDQCVTPMGSRMLKRWLHMPIRDRDALAHRQQAIGG-LQN--ITAELQQPLRQVGDLER 350 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKT 434 L+RL + P+D+A +R + I L + +P + L V K +L LE+ Sbjct: 351 ILARLALRTARPRDLARMRHAFQQLPEIHQLLSQIAVPHIQYLLSQVGKFDELQNLLERA 410 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + + P RDGG + G A LDE RSL D + + L+++ E+ + LK+ Sbjct: 411 IV----ETPPVLVRDGGVIASGYHAELDEWRSLADGATDYLDRLEIREREKLGLDTLKVG 466 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N GYFI+V+ + ++ ++ RQT+ N R+ EL + E+++ + A Sbjct: 467 FNGVHGYFIQVSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSKGKA 520 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L IE +E + + ++ +L +++ +A +D+ LA A+ NY P + ++ + Sbjct: 521 LAIEKALYEEIFDRLLPHLTALQSSAGALAELDVLANLAERAETLNYTCPTLSDNPGIKI 580 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 GRHP+VEK L+ PFIAN LS ++ ++TGPNMGGKST++RQ ALIV Sbjct: 581 VAGRHPVVEKVLR----DPFIANPLSLSPQR-----RMLIITGPNMGGKSTYMRQTALIV 631 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++A MGS+VPA A IG VD++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT QS V+ Sbjct: 632 LLAHMGSFVPADNAVIGPVDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEQSLVL 691 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 692 MDEIGRGTSTYDGLSLAWACAENLASRIKAMTLFATHYFELTTLPEKMEGVVNVHLDAME 751 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 E I F+H V G A SYG+ V LAG+P VI RA LK E L +N + Sbjct: 752 HGETIAFMHSVQEGAASKSYGLAVAALAGVPREVIKRARQKLKELESL-SNNAASSNIDG 810 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 ++ L++ VE ++ L+ D +SP AL+ LY +K Sbjct: 811 SQLTL------LNEEVSPAVEALEMLDPDSLSPRQALEWLYRLKG 849 >gi|304399204|ref|ZP_07381071.1| DNA mismatch repair protein MutS [Pantoea sp. aB] gi|304353258|gb|EFM17638.1| DNA mismatch repair protein MutS [Pantoea sp. aB] Length = 853 Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust. Identities = 312/885 (35%), Positives = 493/885 (55%), Gaps = 43/885 (4%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 E++ S TPMM+QY+ +K+ +PD L+FYRMGDFYELF+DDA AS+ L I+LTKRG G Sbjct: 6 EKDFPSHTPMMQQYLRLKAEHPDILLFYRMGDFYELFYDDAKRASQLLEISLTKRGASAG 65 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT Sbjct: 66 EPIPMAGVPYHAVEGYLAKLVQLGESVAICEQIGDPAL-----SKGPVERKVVRIVTPGT 120 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E+ Sbjct: 121 ISDEALLQERHDNLLAAIVQSPRGFGYATLDISSGRFRLSEPADAETMAAELQRTNPAEL 180 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVE 256 ++ E + SL + + +P F+ + ++ + ++ FG + + Sbjct: 181 LYPED----FQAMSLIDQRRGLR-RRPLWEFEIDTARQQLNLQFGTRDLNGFGVENAHLG 235 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 +AA + Y+K TQ P I E Q ++ +D+A R NLEI + L+G + +L Sbjct: 236 LSAAGCLLQYVKDTQRTTLPHIRSLSMERQQDSIIMDAATRRNLEITQNLAGGTDNTLAA 295 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D ++T G R+ + PL D+ IN R +SI +QN L + +Q +L+ D+ R Sbjct: 296 VLDKTVTPMGSRMLKRWLHMPLRDARIINQRQESIAE-LQN--LSDVLQPVLRQVGDLER 352 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEKLKKLPQSLEKT 434 L+RL + P+D+A +R + + L + P+ +LR + + L + LE+ Sbjct: 353 ILARLALRTARPRDLARMRHAFQQLPELNQLLADVEAPQLQKLRAQMGEFTALRELLEQA 412 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + + P RDGG + G +A LDE R+L D + + L+++ E+ + LK+ Sbjct: 413 VI----ESPPVLIRDGGVIAPGYNAELDEWRALADGATDYLDRLEIREREKLGLDTLKVG 468 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N GY+I+V+ + + ++ RQT+ N R+ EL + E+++ + A Sbjct: 469 FNGVHGYYIQVSRGQSHQVPM------HYVRRQTLKNAERYIIPELKEYEDKVLTSKGKA 522 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L +E +E L + ++ E+L ++ +A +D+ LA A NYCRP++ + Sbjct: 523 LSLEKSLYEALFDQLLPHLEALQLSAAALAELDVLSNLAERAWSLNYCRPVLQEKAGIKI 582 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 GRHP+VE+ LK+ PFIAN L+ ++ ++TGPNMGGKST++RQ ALI Sbjct: 583 SGGRHPVVEQVLKE----PFIANPLSLAPQR-----RMLIITGPNMGGKSTYMRQAALIA 633 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 +MA +GS+VPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V+ Sbjct: 634 LMAWIGSFVPADETLIGPLDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVL 693 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 694 MDEIGRGTSTYDGLSLAWACAENLANRIKAMTLFATHYFELTTLPEKMEGVVNVHLDAVE 753 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 + I F+H V G A SYG+ V LAG+P VI RA + LK E + +H+ Sbjct: 754 HGDTIAFMHSVQEGAASKSYGLAVAALAGVPKEVIKRARNKLKELENVSNHSASS----- 808 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 L + VE ++ L+ D ++P AL +Y +K+ Sbjct: 809 --TVDGSQLPLLVEETSPAVEALEALDPDTLTPRQALDWIYRLKS 851 >gi|44888195|sp|Q83CQ2|MUTS_COXBU RecName: Full=DNA mismatch repair protein mutS Length = 859 Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust. Identities = 316/891 (35%), Positives = 491/891 (55%), Gaps = 61/891 (6%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 + + TPMMRQY+ IK+ PD LVFYRMGDFYELF+DDA A++ L ITLT RG+ G Sbjct: 11 QNDFSQHTPMMRQYLRIKAEYPDLLVFYRMGDFYELFYDDAKKAAKLLNITLTARGQSAG 70 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 IPM GVP H +Y+ KL+++G + ICEQI P +K V R V R++TPGT Sbjct: 71 HAIPMAGVPYHAVENYLTKLVRLGESVVICEQIGDPATSK-----GPVAREVTRIITPGT 125 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N LM + + + + IA +DI++G F I + + L ++I RI P E+ Sbjct: 126 VSDEALLDEHRDNTLMVIHQEKDRFGIATLDITSGRFLIQEIISENALFAEIERIRPAEL 185 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVE 256 + SE+ S+ + +P FDH+ + + + + ++D FG + + Sbjct: 186 LISEE-------NSVHPLKADSIKRRPPWEFDHATALTLLCQQFQTKSLDGFGITHLPLA 238 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 TAA + Y+ TQ P I + E + LFID+ R NLE++ L G SL Sbjct: 239 ITAAGCLLQYVNYTQKSALPHIHSIQAEQNEEALFIDANTRRNLELITNLQGEEVHSLAW 298 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D++ T G RL I PL D + R ++++ ++ + I + L+ D+ R Sbjct: 299 LLDHTATPMGSRLLRRWINRPLRDQILLQQRQNAVSTLLEKRNY-SEIYENLRHIGDLER 357 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK---LPQSLEK 433 ++R+ + P+D+ +R + + L+ L N LP L ++++K L L + Sbjct: 358 IVARIALRSARPRDLMQLRQAL-GVLPTLHQQLTN-LP--LNKQLQEIKNNLGLFDELFR 413 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + ++ P RDGG + DG DA LDE R++ S + + L+ + E TKI +K+ Sbjct: 414 LLKKAIIENPPIVIRDGGVIADGYDAPLDELRNMSTNSHQFLIDLEQQERERTKINTVKV 473 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GY+IE++ + A ++ +I RQT+ N+ R+ T EL E+++ ++ + Sbjct: 474 GYNRIHGYYIEISRAQAK------QAPTEYIRRQTLKNVERYITPELKIFEDKVLSSRSR 527 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL E E +E L + +IE+ L + IA +D+ LA A N+ P + Sbjct: 528 ALAREKELYEQLLDTLIEKLIPLQQCASAIANLDVLNTLAERADTLNFNAPQFCDYPIIK 587 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 ++ GRHPIVE + + PF+ ND L ++ ++TGPNMGGKST++RQ ALI Sbjct: 588 IEAGRHPIVENVM----TDPFMPNDTHLD-----EKRRMLIITGPNMGGKSTYMRQTALI 638 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 ++A +GS+VPA A +G +D++F+R+G+AD+LASGRSTFMVEM ETA+IL+ AT +S V Sbjct: 639 TLLAYIGSFVPAKNAQLGPIDRIFTRIGAADDLASGRSTFMVEMTETAAILHNATEESLV 698 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DE+GRGT+T DGLS+A+A YL + L ATH+ ELT L+ +L+ N L Sbjct: 699 LMDEVGRGTSTFDGLSLAYACASYLATKLKAFALFATHYFELTALASTLQAVKNVHLDAV 758 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 + E IIFLH + G A+ SYG+QV +LAG+P +VI H QK L Sbjct: 759 EHEEKIIFLHALREGPANKSYGLQVAQLAGIPRSVIQ-------------HARQKLEELE 805 Query: 854 YPEIQTKESKNNLSKNDKLFVE-------KIKCLNLDEMSPLTALKTLYAV 897 P I S+ + ++LF+ ++ LN D ++P AL LY + Sbjct: 806 NPVI----SETQQPQQNELFLPIENPVLTQLDKLNPDNLTPKQALDILYQL 852 >gi|7229490|gb|AAF42850.1| mismatch repair protein MutS [Pseudomonas aeruginosa PAO1] Length = 856 Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust. Identities = 315/891 (35%), Positives = 489/891 (54%), Gaps = 53/891 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L TPMM+QY ++K +PD L+FYRMGDFYELF++DA A++ L ITLT RG+ GK Sbjct: 3 DLSQHTPMMQQYFKLKHQHPDQLMFYRMGDFYELFYEDAKKAAKLLDITLTARGQSGGKA 62 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM G+P H+A Y+ KL+K+G +AICEQI P +K V R VVR++TPGT++ Sbjct: 63 IPMAGIPFHSAEGYLAKLVKLGESVAICEQIGDPAT-----SKGPVERQVVRIITPGTVS 117 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIF 199 ++ LL N L A+ + +A +DI++G F + + L++++ R++P E++ Sbjct: 118 DEALLDERRDNLLAAILGDERLFGLAVLDITSGRFSVQEIKGWETLLAELERLNPAELLI 177 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + ++ V + + FD + + + + FG + Sbjct: 178 PD------DWPQGLPAEKRRGVRRRAPWDFDRDSAHKSLCQQFGTQDLKGFGCQNLTLAI 231 Query: 259 AAAAA-ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA ++Y K+TQ P + + + T+ +D A+R NLE+ LSG RE +L Sbjct: 232 GAAGCLLAYAKETQRTALPHLRSLRHDRLDDTVILDGASRRNLELDINLSGGRENTLQSV 291 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D T RL + + PL D + R +SI ++ N +Q LK D+ R Sbjct: 292 VDRCQTAMASRLMSRWLNRPLRDRAVLEARQESIACLLERYRFEN-LQPQLKEIGDLERI 350 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 L+R+ + P+D+A +RD + + ++ N + + P L+ + P+ L + L+ Sbjct: 351 LARIGLRNARPRDLARLRDALAALPDLQNAMTELEAP-HLQALATTIGTYPE-LAELLAK 408 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + D+ P RDGG ++ G DA LDE ++L + + + + L+ + T + NLK+ +N Sbjct: 409 AIIDNPPAVIRDGGVIKTGYDAELDELQALSENAGQFLMDLEAREKARTGLPNLKVGYNR 468 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GYFIE+ A D +I RQT+ RF T EL E++ +A + AL Sbjct: 469 IHGYFIELPRVQAEQAPAD------YIRRQTLKGAERFITPELKAFEDKALSAQSRALAR 522 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E +E L +I L +++ +A +D+ LA A + RP T ++ G Sbjct: 523 EKALYEELLERLIGHLAPLQDSASALAELDVLANLAERALNLDLNRPRFVEHTCLHIEQG 582 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ L+ PF+AND L ++ ++TGPNMGGKST++RQ ALIV++A Sbjct: 583 RHPVVEQVLE----TPFVANDLALDA-----DTRMLVITGPNMGGKSTYMRQTALIVLLA 633 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSAD-NLASGRSTFMVEMIETASILNQATNQSFVILD 736 +GS+VPA+ + +VD++F+R+GS+D +LA GRSTFMVEM ETA+IL+ AT++S V++D Sbjct: 634 HIGSFVPAARCELSLVDRIFTRIGSSDXDLAGGRSTFMVEMSETANILHNATDKSLVLMD 693 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 E+GRGT+T DGLS+AWA E L T R L ATH+ ELT L +S N L ++ N Sbjct: 694 EVGRGTSTFDGLSLAWAAAEDLART-RAFTLFATHYFELTVLPESQPAVANVHLNATEHN 752 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--KLYHHNQKDMRLYY 854 E I+FLH V+PG A SYG+ V +LAG+P VI RA + LK E L H Sbjct: 753 ERIVFLHHVLPGPASQSYGLAVAQLAGVPAPVIQRAREHLKRLETTSLPHE--------M 804 Query: 855 PEIQTKESKNNLSKNDKLF-------VEKIKCLNLDEMSPLTALKTLYAVK 898 P Q+ + + + + LF ++++ +N D++SP AL LYA K Sbjct: 805 PSQQSGKPASPMQSD--LFASLPHPVIDELSRINPDDISPRQALDLLYAWK 853 >gi|90020903|ref|YP_526730.1| DNA mismatch repair protein MutS [Saccharophagus degradans 2-40] gi|123277407|sp|Q21LB1|MUTS_SACD2 RecName: Full=DNA mismatch repair protein mutS gi|89950503|gb|ABD80518.1| DNA mismatch repair protein MutS [Saccharophagus degradans 2-40] Length = 887 Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust. Identities = 314/903 (34%), Positives = 492/903 (54%), Gaps = 58/903 (6%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 ++ TPMM+QY+ IK+ +P+ +VFYRMGDFYELFFDDA A++ L +TLT RGK G+ IP Sbjct: 13 ENHTPMMQQYLRIKAEHPNEIVFYRMGDFYELFFDDAKKAAKLLDVTLTARGKSNGEPIP 72 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H A +Y+ KL+++G +AI EQ+ P K V R V+R+VTPGT++++ Sbjct: 73 MAGVPYHAAENYLAKLVRLGVSVAIVEQVGDPAT-----TKGPVERKVMRIVTPGTVSDE 127 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSE 201 LL T N L+A+ + I+ +D+ +G F + ++ + LI +I R+ P E++ E Sbjct: 128 ALLDETRDNLLVAITLKDERYGISSLDMGSGRFTVFEVADEEALIGEIERLQPAELLAPE 187 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 L+ SL +P+ F++ ++ + ++ + FG +AA Sbjct: 188 L-LTVPNIISLRAGYRR----RPDWEFEYDTAQRLLTRHFGTQDLSGFGCEDFTAGISAA 242 Query: 262 AAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 + +Y ++TQ + ++ ++ + +D+A R NLE+ L+G+ + +L ++ Sbjct: 243 GCLFAYAQETQKTTLSHVAKLVLDNPETKVTLDAATRRNLELDTNLAGTEDNTLFSVLNT 302 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGRL + SPL D +N R +I + N P++ LK D+ R L R Sbjct: 303 TTTAMGGRLLRRWLHSPLRDIYILNQRQSAIEALLDN-YQFEPLRHTLKHISDLERILGR 361 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 L + P+D++ + I I D P L+ +++++ P L LS L Sbjct: 362 LALRSARPRDLSRLCASIAEFPAIQQHLNGIDSPL-LKKLAKEIREFP-DLVDLLSRALM 419 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 ++ P R+GG + +G D LDE R++ + + L+ + +T + LK+ +N G Sbjct: 420 ENPPVVIREGGVIAEGFDEELDELRAISTNAGDYLIKLEEQERAKTGLSTLKVGYNRVHG 479 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IE++ S AS + +I RQT+ N RF T EL E++ +A + AL E Sbjct: 480 YYIEISKSQAS------SAPTEYIRRQTLKNAERFITPELKTFEDKALSAKSRALAREKG 533 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 ++ L + EQ L A+ +A +D+ LA + N+C+P + ++ GRHP Sbjct: 534 LYDDLIETLNEQLRELQVAASGVAELDVLTTLAERSNLLNFCKPELYEGEGIFIEQGRHP 593 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE+ L PF+ ND L ++ ++TGPNMGGKST++RQ ALIV++AQ+G Sbjct: 594 VVEQVL----DDPFVPNDLLLD-----TDQRMLIITGPNMGGKSTYMRQTALIVLLAQIG 644 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 YVPAS +G+VD++F+R+GS+D+LA GRSTFMVEM ETA+ILN AT S V++DEIGR Sbjct: 645 CYVPASACKLGLVDRIFTRIGSSDDLAGGRSTFMVEMTETANILNNATRNSLVLMDEIGR 704 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GT+T DGLS+AWA +E+L L ATH+ ELT L K+L N L ++ N+ I+ Sbjct: 705 GTSTYDGLSLAWACVEHLANNLHAFTLFATHYFELTGLPKALAGVQNVHLDATEHNDSIV 764 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ-- 858 FLHK+ PG A S+G+QV KLAG+P+ VI+ A L+ E D +P + Sbjct: 765 FLHKIQPGPASKSFGLQVAKLAGIPSNVIADAGGHLRRLEA---QPTVDTPHQFPAPEPI 821 Query: 859 -----TKESKNN----------LSKNDKLFVE--------KIKCLNLDEMSPLTALKTLY 895 E + N S LF K++ +N D ++P AL+ LY Sbjct: 822 ALQEPVAEPEPNKPAAAAKTKPASPQPDLFASAAPSAVEIKLRSINPDNLTPRQALQALY 881 Query: 896 AVK 898 +K Sbjct: 882 DLK 884 >gi|331006215|ref|ZP_08329537.1| DNA mismatch repair protein MutS [gamma proteobacterium IMCC1989] gi|330419972|gb|EGG94316.1| DNA mismatch repair protein MutS [gamma proteobacterium IMCC1989] Length = 901 Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust. Identities = 315/923 (34%), Positives = 504/923 (54%), Gaps = 84/923 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ IK+ +P +VFYRMGDFYELFFDDA S+ L ITLT RGK G+ IPM G Sbjct: 9 TPMMQQYLGIKAEHPHEVVFYRMGDFYELFFDDAKRVSQILDITLTARGKSGGEPIPMAG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H+A+ Y+ KL++ G +AICEQ+ P +K V R V+R+VTPGT+T++ LL Sbjct: 69 IPYHSADGYLAKLVQAGESVAICEQVGDPATSK-----GPVERKVMRIVTPGTVTDEALL 123 Query: 146 SPTDSNYLMAV-----------ARIRTE-------WAIAWIDISTGIFKI-STSNHDRLI 186 + N L+AV TE + IA +D+ +G F + + + L Sbjct: 124 NAKHDNLLVAVNVGASTVNKSTVNKSTENKNSENTYGIATLDVGSGRFYVLEVDSEEALA 183 Query: 187 SDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTV 246 +++ R++P E++ ++ H E ++ ET + P FD ++ + + + + Sbjct: 184 AELQRLNPAELLLNQ----HLENTTIGETRKGLRYRAP-WEFDLDTAQRLLCEQFGTRDL 238 Query: 247 DTFGSFS-QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT 305 FG V K AA ++Y+++TQ P I ++E+ Q ++ +D++ R NLE+ Sbjct: 239 IAFGCEELTVAKGAAGCVMAYVQETQRTALPHICRLQQENRQDSVLMDASTRRNLELCTN 298 Query: 306 LSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQ 365 LSG + +L ++ T G R A I PLT + R ++I + N P+ Sbjct: 299 LSGGEDNTLFSILNTCATTMGSRQLARWINRPLTQQDILVQRQEAIGTLLGN-YRFEPMH 357 Query: 366 KILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAV---- 421 LK+ D+ R L+R+ + P+D++ + L+L + L E L V Sbjct: 358 DTLKAIGDLERILARVALRSARPRDLSRLS---------LSLAVYPQLQELLAALVLDKT 408 Query: 422 -EKLKKLPQSLE------KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRI 474 L +L QS+ L + ++ P RDGG + +G D+ LDE R++ + + Sbjct: 409 CPLLTQLSQSISTFPEIVSLLEKAIIENPPVVIRDGGVIAEGYDSELDELRNISSHAGQF 468 Query: 475 IASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTR 534 + L+ + E T I LK+ +N GY+IE++ + + ++ +I RQT+ N R Sbjct: 469 LIDLETQEKERTGIATLKVGYNRVHGYYIEISRAQSD------KAPAEYIRRQTLKNAER 522 Query: 535 FTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAI 594 F T EL + E++ +A + AL E +E + + EQ +L ++ +A +D+ LA Sbjct: 523 FITPELKEFEDKALSAKSRALSREKALYEAIIEQLNEQLLALQISAAAVAELDVLTTLAE 582 Query: 595 LAKEQNYCRPIIDNST------NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKN 648 A +C P + +T + ++ GRHP+VE+ L + PF+ ND L+ +D+ Sbjct: 583 RADRLQFCCPTLTVTTAAAETNSITIEQGRHPVVEEVLA--GTAPFVPNDISLN--HDR- 637 Query: 649 SGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLAS 708 ++ ++TGPNMGGKST++RQ ALI ++A +GSYVPA A I IVD++F+R+GS+D+LA Sbjct: 638 --RMLIITGPNMGGKSTYMRQTALITLLAHIGSYVPAKSATISIVDRIFTRIGSSDDLAG 695 Query: 709 GRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLL 768 GRSTFMVEM ETA+IL AT S V++DEIGRGT+T DGLS+AWA +L + + L Sbjct: 696 GRSTFMVEMTETANILQNATKNSLVLMDEIGRGTSTFDGLSLAWACAHHLADNIQALCLF 755 Query: 769 ATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTV 828 ATH+ E+T L +S+ N L ++ N+ I+FLH++ G A SYG+QV KLAG+P +V Sbjct: 756 ATHYFEITSLPESVTGVANVHLSATEHNDNIVFLHRIEEGAASQSYGLQVAKLAGIPQSV 815 Query: 829 ISRAYDILKTFEKLYHHN------QKDMRLYYPEIQTKESKNNLSKNDKLF-------VE 875 ++ A L+ E H + + P QT + + D+LF +E Sbjct: 816 VNEAQQQLRLLESGQHPHSNSYSSTSTSHVPAPSPQTAAPQET-PQQDELFPSAPHPAIE 874 Query: 876 KIKCLNLDEMSPLTALKTLYAVK 898 + ++ D+++P AL+ L+ +K Sbjct: 875 MLSSIHPDDLTPRQALEALFDLK 897 >gi|302187931|ref|ZP_07264604.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. syringae 642] Length = 855 Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust. Identities = 315/889 (35%), Positives = 490/889 (55%), Gaps = 50/889 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L S TPMM+QY ++K+ + D L+FYRMGDFYE+F++DA A++ L ITLT RG+ G+ Sbjct: 3 DLSSHTPMMQQYWKLKNQHLDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQS 62 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCG+P H A Y+ KL+K+G + ICEQI P +K V R VVR++TPGT++ Sbjct: 63 IPMCGIPYHAAEGYLAKLVKLGESVVICEQIGDPAT-----SKGPVDRQVVRIITPGTIS 117 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIF 199 ++ LL N + AV + +A +DI++G F + + L++++ RI+P E++ Sbjct: 118 DEALLDERRDNLIAAVLGDERLFGLAVLDITSGNFSVLEIKGWENLLAELERINPVELLI 177 Query: 200 SE--KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 + + AE + G+ A + F+ + + + + FG + Sbjct: 178 PDDWPQGLPAEKRR-----GSRRRAPWD--FERDSAHKSLCQQFATQDLKGFGCENLTLA 230 Query: 258 TAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 AA + SY K+TQ P + E + T+ +D+A+R NLE+ LSG R+ +L Sbjct: 231 IGAAGCLLSYAKETQRTALPHLRSLRHERLDDTVILDAASRRNLELDTNLSGGRDNTLQS 290 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D T G RL + PL D T + R SI F++ N +Q LK D+ R Sbjct: 291 VMDRCQTAMGTRLLTRWLNRPLRDLTILQARQTSITCFLERYRFEN-LQPQLKEIGDIER 349 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 L+R+ + P+D+A +RD + + + D P L+ + P+ L L Sbjct: 350 ILARIGLRNARPRDLARLRDALSALPELQQAMTDLDAPH-LQQLAQTASTYPE-LADLLQ 407 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + D+ P RDGG L+ G DA L + +SL + + + + L+ + T + NLK+ +N Sbjct: 408 RAIIDNPPAVIRDGGVLKTGYDAELHDLQSLSENAGQFLIDLEAREKARTGLGNLKVGYN 467 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GYFIE+ S A D +I RQT+ RF T EL + E++ +A + AL Sbjct: 468 RVHGYFIELPSKQAEQAPAD------YIRRQTLKGAERFITPELKEFEDKALSAKSRALA 521 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 E +E L +I L + + +A +D+ LA A + P ++ Sbjct: 522 REKMLYEALLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLDLNCPRFVAEPCMRIEQ 581 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE+ L S PF+AND L +S ++ ++TGPNMGGKST++RQ ALIV++ Sbjct: 582 GRHPVVEQVL----STPFVANDLALD-----DSTRMLVITGPNMGGKSTYMRQTALIVLL 632 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A +GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V++D Sbjct: 633 AHIGSFVPAASCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMD 692 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 E+GRGT+T DGLS+AWA E L + R L ATH+ ELT L +S N L ++ N Sbjct: 693 EVGRGTSTFDGLSLAWAAAECLAQL-RAYTLFATHYFELTVLPESEPLVTNVHLNATEHN 751 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 E I+FLH+V+PG A SYG+ V +LAG+P VISRA + L+ E L + + Sbjct: 752 ERIVFLHRVLPGPASQSYGLAVAQLAGVPGKVISRAKEHLQRLET--------TSLPHEQ 803 Query: 857 IQTKESKNNLSKNDKLF-------VEKIKCLNLDEMSPLTALKTLYAVK 898 + K K + + +F ++++ + +D+M+P AL LY ++ Sbjct: 804 PRAKPGKPAVPQQSDMFASLPHPVLDELSKVKVDDMTPRQALDLLYTLQ 852 >gi|215919092|ref|NP_820057.2| DNA mismatch repair protein MutS [Coxiella burnetii RSA 493] gi|206583977|gb|AAO90571.2| DNA mismatch repair protein [Coxiella burnetii RSA 493] Length = 871 Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust. Identities = 316/891 (35%), Positives = 491/891 (55%), Gaps = 61/891 (6%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 + + TPMMRQY+ IK+ PD LVFYRMGDFYELF+DDA A++ L ITLT RG+ G Sbjct: 23 QNDFSQHTPMMRQYLRIKAEYPDLLVFYRMGDFYELFYDDAKKAAKLLNITLTARGQSAG 82 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 IPM GVP H +Y+ KL+++G + ICEQI P +K V R V R++TPGT Sbjct: 83 HAIPMAGVPYHAVENYLTKLVRLGESVVICEQIGDPATSK-----GPVAREVTRIITPGT 137 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N LM + + + + IA +DI++G F I + + L ++I RI P E+ Sbjct: 138 VSDEALLDEHRDNTLMVIHQEKDRFGIATLDITSGRFLIQEIISENALFAEIERIRPAEL 197 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVE 256 + SE+ S+ + +P FDH+ + + + + ++D FG + + Sbjct: 198 LISEE-------NSVHPLKADSIKRRPPWEFDHATALTLLCQQFQTKSLDGFGITHLPLA 250 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 TAA + Y+ TQ P I + E + LFID+ R NLE++ L G SL Sbjct: 251 ITAAGCLLQYVNYTQKSALPHIHSIQAEQNEEALFIDANTRRNLELITNLQGEEVHSLAW 310 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D++ T G RL I PL D + R ++++ ++ + I + L+ D+ R Sbjct: 311 LLDHTATPMGSRLLRRWINRPLRDQILLQQRQNAVSTLLEKRNY-SEIYENLRHIGDLER 369 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK---LPQSLEK 433 ++R+ + P+D+ +R + + L+ L N LP L ++++K L L + Sbjct: 370 IVARIALRSARPRDLMQLRQAL-GVLPTLHQQLTN-LP--LNKQLQEIKNNLGLFDELFR 425 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + ++ P RDGG + DG DA LDE R++ S + + L+ + E TKI +K+ Sbjct: 426 LLKKAIIENPPIVIRDGGVIADGYDAPLDELRNMSTNSHQFLIDLEQQERERTKINTVKV 485 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GY+IE++ + A ++ +I RQT+ N+ R+ T EL E+++ ++ + Sbjct: 486 GYNRIHGYYIEISRAQAK------QAPTEYIRRQTLKNVERYITPELKIFEDKVLSSRSR 539 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL E E +E L + +IE+ L + IA +D+ LA A N+ P + Sbjct: 540 ALAREKELYEQLLDTLIEKLIPLQQCASAIANLDVLNTLAERADTLNFNAPQFCDYPIIK 599 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 ++ GRHPIVE + + PF+ ND L ++ ++TGPNMGGKST++RQ ALI Sbjct: 600 IEAGRHPIVENVM----TDPFMPNDTHLD-----EKRRMLIITGPNMGGKSTYMRQTALI 650 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 ++A +GS+VPA A +G +D++F+R+G+AD+LASGRSTFMVEM ETA+IL+ AT +S V Sbjct: 651 TLLAYIGSFVPAKNAQLGPIDRIFTRIGAADDLASGRSTFMVEMTETAAILHNATEESLV 710 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DE+GRGT+T DGLS+A+A YL + L ATH+ ELT L+ +L+ N L Sbjct: 711 LMDEVGRGTSTFDGLSLAYACASYLATKLKAFALFATHYFELTALASTLQAVKNVHLDAV 770 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 + E IIFLH + G A+ SYG+QV +LAG+P +VI H QK L Sbjct: 771 EHEEKIIFLHALREGPANKSYGLQVAQLAGIPRSVIQ-------------HARQKLEELE 817 Query: 854 YPEIQTKESKNNLSKNDKLFVE-------KIKCLNLDEMSPLTALKTLYAV 897 P I S+ + ++LF+ ++ LN D ++P AL LY + Sbjct: 818 NPVI----SETQQPQQNELFLPIENPVLTQLDKLNPDNLTPKQALDILYQL 864 >gi|300724639|ref|YP_003713964.1| methyl-directed mismatch repair protein [Xenorhabdus nematophila ATCC 19061] gi|297631181|emb|CBJ91874.1| methyl-directed mismatch repair, recognizes exocyclic adducts of guanosine [Xenorhabdus nematophila ATCC 19061] Length = 862 Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust. Identities = 316/904 (34%), Positives = 498/904 (55%), Gaps = 71/904 (7%) Query: 15 QIDLEE----NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITL 70 QI+++E ++ S TPMM+QY+ +K+ +PD L+ YRMGDFYELF+DDA A++ L I+L Sbjct: 5 QINMKESPAKDIDSHTPMMQQYLRLKAQHPDILLLYRMGDFYELFYDDAKKAAKLLDISL 64 Query: 71 TKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNV 130 TKRG+ G+ IPM GVP H +Y+ KL+++G A+CEQ+ P +K V R V Sbjct: 65 TKRGQSAGQPIPMAGVPYHAIENYLAKLVQLGESAALCEQVGDPATSK-----GPVERKV 119 Query: 131 VRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDI 189 VR+VTPGT+T++ LL N L A+ + A +DI++G F++S ++ D + +++ Sbjct: 120 VRIVTPGTVTDEALLQERHDNLLAAIWHDNQGFGYATLDITSGRFRVSEMTDEDTIAAEL 179 Query: 190 MRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQ--------PNVFFDHSISESRIADYY 241 R P E+++ E T G++A+ + P F+ + ++ + Sbjct: 180 QRTRPAELLYPE-------------TFGHMALIERCHGLRRRPMWEFELDTARQQLNLQF 226 Query: 242 NITTVDTFGSFSQVEKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAA 296 + FG VEKT AA + Y+K TQ P I E Q T+ +D+A Sbjct: 227 GTRDLIGFG----VEKTTLALRAAGCLLQYVKDTQRTALPHIRGITMERQQETVIMDAAT 282 Query: 297 RSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQ 356 R NLE+ + LSG E +L +D +T G R+ + +P+ + + R +I+ + Sbjct: 283 RRNLELTQNLSGGIENTLASVLDQCVTPMGSRMLKRWLHTPIRNQDVLENRQQAISALQE 342 Query: 357 NPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP-- 414 + +Q L+ D+ R L+RL + P+D+A +R + +I + +D P Sbjct: 343 ---IGYELQPFLRQVGDLERVLARLALRSARPRDLARMRHAFQQLPDIHQIMASSDFPYI 399 Query: 415 EELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRI 474 + L+ V +L Q+L L + + + P RDGG + G +A LDE R+L D + Sbjct: 400 QALQQRVGNFDEL-QTL---LENAVVETPPVLVRDGGVIATGYNAELDEWRALADGASDY 455 Query: 475 IASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTR 534 + L+++ E+ I LK+ N GY+I+V+ + ++ ++ RQT+ N R Sbjct: 456 LDRLEIREREKLGIDTLKVGFNAVHGYYIQVSRGQSHLVPI------HYVRRQTLKNAER 509 Query: 535 FTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAI 594 + EL + E+++ + AL IE +E L + ++ +L +++ +A +D+ LA Sbjct: 510 YIIPELKEYEDKVLTSKGKALAIEKALYEELFDLLLPHLAALQTSAEALAELDVLANLAE 569 Query: 595 LAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWL 654 A+ NY PI+ + + GRHP+VE+ L S+PFI+N LS +L + Sbjct: 570 RAETLNYTCPILTDKVGIQITGGRHPVVEQVL----SEPFISNPLTLSLQR-----RLLI 620 Query: 655 LTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFM 714 +TGPNMGGKST++RQ ALI ++A +GS+VPA A IG VD++F+RVG++D+LASGRSTFM Sbjct: 621 ITGPNMGGKSTYMRQTALITLLAYIGSFVPAEKAIIGPVDRIFTRVGASDDLASGRSTFM 680 Query: 715 VEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHE 774 VEM ETA+IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ E Sbjct: 681 VEMTETANILHNATEHSLVLMDEIGRGTSTYDGLSLAWACAESLANRIKAMTLFATHYFE 740 Query: 775 LTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYD 834 LT L + L+ N L + + I F+H V G A SYG+ V LAG+P VI RA Sbjct: 741 LTTLPEKLEGVVNIHLDAVEHGDTIAFMHSVQDGAASKSYGLAVASLAGVPRDVIKRARQ 800 Query: 835 ILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 LK E L +H + P++ L++ VE ++ +N D ++P AL+ + Sbjct: 801 KLKELESLSNHATAS-HVDTPQLTL------LTEETSPAVEALENMNPDTLTPRQALEWI 853 Query: 895 YAVK 898 Y +K Sbjct: 854 YRLK 857 >gi|190150933|ref|YP_001969458.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307264287|ref|ZP_07545876.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|238692406|sp|B3H2J9|MUTS_ACTP7 RecName: Full=DNA mismatch repair protein mutS gi|189916064|gb|ACE62316.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306870351|gb|EFN02106.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 864 Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust. Identities = 313/891 (35%), Positives = 489/891 (54%), Gaps = 41/891 (4%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 + ++L TPMM QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG Sbjct: 1 MTQDLSKHTPMMAQYLQLKAQNPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGASA 60 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G+ IPM GVP H Y+ KL+ +G +AICEQI P +K V R VVR+VTPG Sbjct: 61 GEPIPMAGVPYHAVEGYLAKLVSLGESVAICEQIGDPAT-----SKGPVERKVVRIVTPG 115 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPRE 196 T++++ LL N + A+ + +AIA +D+++G F I+ N + L +++ R+ P E Sbjct: 116 TVSDEALLPERQDNLVAAIYEEKGVFAIATLDMTSGRFLITELPNKEALAAELQRLLPAE 175 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 I+++E + S AE + ++ L +P F+ + + + + ++ FG + V Sbjct: 176 ILYAE-DFSAAEILNNYKGLRR----RPVWEFELVTAINLLNRQFGTQSLAGFGVEKAVV 230 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA + Y ++TQ P I T+ +D+A R NLE+ + L+G E +L Sbjct: 231 ALCAAGCVLHYAQETQRTALPHINSIHLAQNSDTVLLDAATRRNLELTQNLAGGTENTLA 290 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D +T G RL I P+ D K+ R D I+ +Q I +Q +L++ D+ Sbjct: 291 AVLDKCVTPMGSRLLKRWIHQPIRDLEKLKKRQDIIDT-LQKEQRIELLQPLLQNVGDME 349 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN--DLPEELRGAVEKLKKLPQSLEK 433 R L+R+ + P+D+ +R + +I KN +L L V ++ + L Sbjct: 350 RILARVALRSARPRDLTRLRTALAQLPDIA----KNAKNLTASLDALVAQIGDFSE-LHA 404 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + + P RDGG + +G +A LDE R L + + + +L+++ E T I LKI Sbjct: 405 LLERAIIETPPQLIRDGGVIAEGYNAELDEWRELSAGATQYLENLEIREREATGIDTLKI 464 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GY+I+++ A ++ ++ RQT+ N R+ EL E+++ A + Sbjct: 465 GFNAVHGYYIQISQGQAH------KAPMHYVRRQTLKNAERYIIPELKTYEDKVLKAKGA 518 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 +L +E + ++ L + ++ + + A+ ++ +D+ LA A+ NY RP Sbjct: 519 SLALEKQLYDELFDLLMPRLGEMQLAAMALSELDVLTNLAERAESLNYVRPTFSLQRGVN 578 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +K GRHP+VE+ LK PFIAN L+ L ++TGPNMGGKST++RQ ALI Sbjct: 579 IKGGRHPVVEQVLK----DPFIANPVFLNAQR-----HLLVVTGPNMGGKSTYMRQIALI 629 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT S V Sbjct: 630 SLMAYIGSFVPADSAEIGALDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATENSLV 689 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA E+L + + L ATH+ ELT L LK N L Sbjct: 690 LIDEIGRGTSTYDGLSLAWACAEWLAKKTQSLTLFATHYFELTSLPSQLKGVANVHLDAR 749 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL------YHHNQ 847 + + I+F+H V G A SYG+ V LAG+P VI A L E++ H N Sbjct: 750 EHQDSIVFMHSVQEGAASKSYGLAVAALAGVPKQVIQLAKQRLAHLEEISLQTKEAHDNP 809 Query: 848 KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L+ ++Q L + + ++ DE++P AL+ LY +K Sbjct: 810 QGDLLFAADLQETPQIQPLVAQQSELEKALMSIDPDELTPRQALEALYRLK 860 >gi|269302731|gb|ACZ32831.1| DNA mismatch repair protein MutS [Chlamydophila pneumoniae LPCoLN] Length = 828 Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust. Identities = 313/827 (37%), Positives = 460/827 (55%), Gaps = 30/827 (3%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TPMM Q+ + K DS++ +RMGDFYE F+DDA+L S+ L +TLT+R + IP Sbjct: 4 KKPTPMMEQWHQCKEKAGDSVLLFRMGDFYEAFYDDAVLLSQHLELTLTQR-----QGIP 58 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M G+PV T + Y+ +LI G ++A+ EQ P + K+ + R++ R VTPGTL Sbjct: 59 MSGIPVSTVDTYVDRLIGKGFKVAVAEQFGEPAKEKESKKIGPMARDIQRFVTPGTLLSS 118 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII--- 198 LL +NY++A+ RI + + A +D+STG F I N L+ +I R+ P E++ Sbjct: 119 TLLQEKSNNYIVAINRIGSLFGFACLDLSTGSFFIEECENTKELVDEICRLAPSEVLSCN 178 Query: 199 -FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 F KE A L + L + F+H + ++ ++ + ++D FG V Sbjct: 179 KFYNKET--AIVMQLQQHLKLTLSTYADWAFEHKFASQKLTTHFQVASLDGFGLKGLVPA 236 Query: 258 -TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR-EQSLL 315 AA +SYI+ ++ I P+ Q L ID+A++ NLE+L L+ + + SLL Sbjct: 237 INAAGGLLSYIQDKLLLPTKHIAIPQTRGKQQKLLIDTASQVNLELLAPLNDPQGKNSLL 296 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 + +D++ T GGRL + + SP + +I R D++ FF++ L I+ L D+ Sbjct: 297 RIMDHTSTPMGGRLLRQILISPFYNPKEILVRQDAVEFFLRQVTLRKNIKTYLCQVRDIE 356 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R ++++ G P+DI +RD +G I LPE KL SL L Sbjct: 357 RLMTKVTTGLAGPRDIGTLRDSFSAGAQIYEQLASATLPEFFIDKCSLDTKLA-SLIALL 415 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 S L+ DLP DG D L R ++ S+ I Q + +ET IK LKI Sbjct: 416 SKSLNGDLPLRVSDGNIFVDEFHNDLKRLRHNQEHSQEWIWEYQERIRKETGIKKLKICF 475 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 LGY+IEV+S A L KD FI RQ+ + RFTT+EL ++ ++N + Sbjct: 476 AQALGYYIEVSSEFAPQLPKD------FIRRQSRLHAERFTTIELQQFQDDMSNISEKLQ 529 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E + F+ L + I++ + SQ +A +D I+LA LA Q YCRP +D S + Sbjct: 530 TLETQFFKDLCSHILQLRTEILALSQSLADLDYIISLADLAHAQGYCRPRVDMSDTLCIY 589 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 G HP V KTL + FI ND ++ + ++ LLTGPNM GKST++RQ AL+VI Sbjct: 590 RGCHP-VAKTLV--DTGKFIPNDTEMR----GSQTRMILLTGPNMAGKSTYIRQIALLVI 642 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQMGSY+PA AHIG++DK+F+R+G+ DNL+ G STFMVEM ETA+IL+ AT++S VIL Sbjct: 643 MAQMGSYIPAKSAHIGVIDKIFTRIGAGDNLSKGMSTFMVEMAETANILHNATDRSLVIL 702 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 DE+GRGT+T DGL+IA A +EYL T+ + + L ATH+ ELT L N V Sbjct: 703 DEVGRGTSTYDGLAIAQAVVEYLLFTDKKKAKTLFATHYKELTTLEDHCPHVENFHAGVK 762 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 D +FL++++ G + S+GI V +LAG P V+SRA IL+ E Sbjct: 763 DKAGQPVFLYEILKGHSQKSFGIHVARLAGFPLCVVSRAQQILRQLE 809 >gi|77457361|ref|YP_346866.1| DNA mismatch repair protein MutS [Pseudomonas fluorescens Pf0-1] gi|92087045|sp|Q3KH79|MUTS_PSEPF RecName: Full=DNA mismatch repair protein mutS gi|77381364|gb|ABA72877.1| DNA mismatch repair protein [Pseudomonas fluorescens Pf0-1] Length = 860 Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust. Identities = 315/885 (35%), Positives = 488/885 (55%), Gaps = 41/885 (4%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L S TPMM+QY +K+ +PD L+FYRMGDFYE+F++DA A++ L ITLT RG+ G+ Sbjct: 7 DLSSHTPMMQQYWRLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQA 66 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCG+P H A Y+ KL+K+G + ICEQ+ P +K V R VVR++TPGT++ Sbjct: 67 IPMCGIPYHAAEGYLAKLVKLGESVVICEQVGDPAT-----SKGPVERQVVRIITPGTVS 121 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIF 199 ++ LL N + AV + +A +DI++G F + + L++++ R++P E++ Sbjct: 122 DEALLDERRDNLIAAVLGDERLFGLAVLDITSGNFTVLEIKGWENLLAELERVNPVELLI 181 Query: 200 SE---KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 + K+L + + V P F S +S + ++ + FG + Sbjct: 182 PDDWPKDLPAEKRR-------GVRRRAPWDFERDSALKS-LCQQFSTQDLKGFGCETLTL 233 Query: 257 KTAAAAA-ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA ++Y K+TQ P + E + T+ +D A+R NLE+ L+G R+ +L Sbjct: 234 AIGAAGCLLAYAKETQRTALPHLRSLRHERLDDTVVLDGASRRNLELDTNLAGGRDNTLQ 293 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D T G RL + PL D T + R SI + N +Q LK D+ Sbjct: 294 SVVDRCQTAMGSRLLTRWLNRPLRDLTVLLARQTSITCLLDRYRFEN-LQPQLKEIGDIE 352 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R L+R+ + P+D+A +RD + + L + + + L+ P+ L L Sbjct: 353 RILARIGLRNARPRDLARLRDAL-GALPELQVAMTDLEAPHLQRLATTTSTYPE-LAALL 410 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + D+ P RDGG L+ G D+ LDE +SL + + + + L+ + T + NLK+ + Sbjct: 411 EKAIIDNPPAVIRDGGVLKTGYDSELDELQSLSENAGQFLIDLEAREKARTGLANLKVGY 470 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GYFIE+ S A D +I RQT+ RF T EL + E++ +A + AL Sbjct: 471 NRIHGYFIELPSKQAESAPAD------YIRRQTLKGAERFITPELKEFEDKALSAKSRAL 524 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 E +E L +I Q L + + +A +D+ LA A + P + + Sbjct: 525 AREKMLYEALLEDLISQLPPLQDTAGALAELDVLSNLAERALNLDLNCPTFVSEPCMRIS 584 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ L + PF+AND L D N+ ++ ++TGPNMGGKST++RQ ALIV+ Sbjct: 585 QGRHPVVEQVL----TTPFVANDLSL----DDNT-RMLVITGPNMGGKSTYMRQTALIVL 635 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +A +GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT +S V++ Sbjct: 636 LAHIGSFVPAASCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSLVLM 695 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGT+T DGLS+AWA E L + R L ATH+ ELT L ++ N L ++ Sbjct: 696 DEVGRGTSTFDGLSLAWAAAERLAQL-RAYTLFATHYFELTVLPEAEPLVANVHLNATEH 754 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--KLYHHNQKDMRLY 853 NE I+FLH V+PG A SYG+ V +LAG+P+ VI RA + L E L H K Sbjct: 755 NERIVFLHHVLPGPASQSYGLAVAQLAGVPSEVIVRAREHLSRLEDTALPHEAPKPAAKG 814 Query: 854 YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P + + + ++++ L+LD+++P AL+ LYA+K Sbjct: 815 KP--AAPQQSDMFASLPHPVLDELAKLDLDDVTPRRALEMLYALK 857 >gi|269792641|ref|YP_003317545.1| DNA mismatch repair protein MutS [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100276|gb|ACZ19263.1| DNA mismatch repair protein MutS [Thermanaerovibrio acidaminovorans DSM 6589] Length = 851 Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust. Identities = 313/880 (35%), Positives = 480/880 (54%), Gaps = 62/880 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM+ QY+ K PD L+F+RMGDFYELFFDDA AS L I LT R + IPM G Sbjct: 9 TPMLEQYLHWKERYPDYLLFFRMGDFYELFFDDAKEASALLDIALTARDPE--RAIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H Y+ +L+++G ++AICEQ+ P ++LV+R VVRLVTPGT + Sbjct: 67 VPYHAVEQYLSRLVELGKKVAICEQVSEP------DGRTLVQRRVVRLVTPGTFVPSE-- 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 D + + V R W +A + +STG+F+ T + + P E++ + ++ Sbjct: 119 GGGDVHLVACVPRGEA-WDLAVLSLSTGLFEAGTVPSGEVQGVLSSYFPTEVLLPKGKVP 177 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI- 264 E V + F + + + ++T++ G + AA A+ Sbjct: 178 --------EDFPWRWVEREVDLFSPRGAHGLLLKRFGLSTLEGLGFHPEDHALGAAGAVL 229 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 Y ++TQ + R L +D ++ NL+++ + SLL +++ T Sbjct: 230 RYAEETQFRELSHLRPLRRISTGRGLMLDLTSQRNLDLVE----PKGASLLGVLNFCKTP 285 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 G R+ E I PL D +IN RLD + FF+++ + + L S DV R+LSRL +G Sbjct: 286 LGRRVLREWILHPLNDPEEINLRLDGVEFFVKDRDGARALGEALSSVGDVERALSRLHLG 345 Query: 385 RGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKL---PQ--SLEKTLSS 437 G PKD A+ RD FL + LP EEL K L P+ +L +TL+ Sbjct: 346 TGGPKDAALCRD-----------FL-SALPRVEELTRRTPKAWHLDLSPRVLALGETLAK 393 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + D P DGG +R G D LDE RS + ++S + + + T I+ LK+++N Sbjct: 394 AIEDRPPRDVSDGGVIRGGFDPELDELRSFLGGHEGWLSSFEERERDRTGIRGLKVRYNK 453 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IEV+ S+A + +D E RQT+ N RF T EL + E ++ A+ + + Sbjct: 454 VFGYYIEVSRSNADRVPEDYE------RRQTLVNAERFVTPELKEFEAKMARASEAVMSR 507 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E +E + ++ + L ++ + +D +L A ++ Y RP +D +++DG Sbjct: 508 ERAVWERVLAELLSLTGELQRLARRVGELDCLFSLGEAAFQRGYVRPQVDLGDELVIRDG 567 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE + + +PF N L D S ++ LLTGPNM GKST+LR AL+VIMA Sbjct: 568 RHPVVEVAM---APEPFTPNHMHL----DSGSRRMILLTGPNMAGKSTYLRMGALLVIMA 620 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 QMGS+VPAS+A +G +++++R+G+ D+LA G+STFMVEM+ETA ILN T +S VILDE Sbjct: 621 QMGSFVPASHARVGCFNRIYTRIGARDDLARGQSTFMVEMVETAQILNGLTGRSLVILDE 680 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRC--RGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 IGRGT+T DG+SIAWA +EYLHE + + L ATH+HELT L++ L N ++ V ++ Sbjct: 681 IGRGTSTDDGMSIAWAVMEYLHERSDLAPKVLFATHYHELTSLAERLPGVSNWSVAVKET 740 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 G++FLH V+P AD SYG++V KLAGLP V+ R+ ++L+ FE ++D+ Sbjct: 741 PRGVVFLHHVVPRPADRSYGVEVAKLAGLPEAVLRRSRELLELFEG---RRRRDVEGAAG 797 Query: 856 EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 + +++ D + E C + D M+PL ++ +Y Sbjct: 798 KGMVRQTSLFDPGVDGILEELAAC-DPDNMTPLQCMERIY 836 >gi|225850312|ref|YP_002730546.1| DNA mismatch repair protein MutS [Persephonella marina EX-H1] gi|254766634|sp|C0QPF0|MUTS_PERMH RecName: Full=DNA mismatch repair protein mutS gi|225646404|gb|ACO04590.1| DNA mismatch repair protein MutS [Persephonella marina EX-H1] Length = 870 Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust. Identities = 316/892 (35%), Positives = 508/892 (56%), Gaps = 65/892 (7%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD-- 80 K+ TPM+ QY +IK PD+LV YR+GDFYE+F++DA +R L I LTK K +GKD Sbjct: 5 KNITPMLAQYHKIKDQYPDALVLYRLGDFYEMFYEDAHTGARELNIVLTK--KKVGKDRY 62 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCG+P H+A+ YI +L+ G+++AICEQ+E +AK +V+R+V+R++TPGT Sbjct: 63 IPMCGIPFHSADSYITRLVSKGYKVAICEQLEDASKAK-----GIVKRDVIRVLTPGTYF 117 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 E++ L L+ + + R + IA++D+STG F + N D LIS I + P+EI+ Sbjct: 118 ENEKLKSA----LLGIYQERGRFYIAYLDLSTGEFTGGSLNRDELISFIGKFQPKEIVVQ 173 Query: 201 EKELSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 E ++ L ++ +Q P +F + S ++ + FG F E+ Sbjct: 174 E----GYDFSDLRSQFKSIFFSQLPEDYFSED-THSEFLGFFKTGHISAFG-FDTEEQNV 227 Query: 260 A---AAAISYIKKTQMVNKPTIGYPE--REDIQSTLFIDSAARSNLEILRTLSGSREQSL 314 +A Y K TQ P I P+ RED S + +D +A+ +LEI+ G+ L Sbjct: 228 IYPLSAVWKYAKVTQKSFLPFISTPKPYRED--SYVRLDYSAQKHLEIVSPNEGN--IPL 283 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L+ +D ++TG G R + PL +S +I R +++ ++N L I+ IL D+ Sbjct: 284 LRVMDRTLTGMGRRKLRFFLLHPLKNSKEIIKRQNAVTELVENTELREKIRDILDQIFDI 343 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIR--SGINILNLFLKNDLPEELRGAVEKLKKLPQSLE 432 R +S++ P+D+ +R+ ++ S + ++ +K+DL L+ + E+++ +E Sbjct: 344 ERLISKISSNTSTPRDLVGLRESLKKVSKLKEISKEIKSDL---LKESFERIEDYSWLIE 400 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 K L L DD P ++GG ++ G D LDE + ++++ + S Q K +ET I++LK Sbjct: 401 K-LDRYLEDDPPIHLKEGGLIKKGVDKDLDELKEIKEKGNEWLKSYQEKLRKETGIQSLK 459 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 I N +GY+IEVT + ++ D F RQT+SN RF T EL E +I +A Sbjct: 460 IGFNKVMGYYIEVTKPNLKLVP------DHFRRRQTLSNAERFITDELQSFEEKILSADE 513 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 +E E F + + S+ + +Q + +ID +LA +A E+ + +P I + Sbjct: 514 KIKALEYEIFMRIREEVAFLSDRIGKTAQQVGMIDAIQSLAQIAVEKGWTKPDIHDGYEI 573 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 +K+G HP++++ + F+ N+ + ++NS ++TGPNM GKSTF+RQ+A+ Sbjct: 574 EIKEGYHPVIKEFMPD-----FVPNNLKM----NRNS-YFHIITGPNMAGKSTFIRQSAI 623 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 I+++AQ GSY+PA IG+VD +F+R+GS D LA G STFMVEM+E A+I+N AT +SF Sbjct: 624 IILLAQTGSYIPAKKGKIGVVDAIFTRIGSGDALAKGLSTFMVEMLEMANIVNNATERSF 683 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 ++LDE+GRGT+T DGLSI WA EYL E + + L ATH+HELT L + +K N + + Sbjct: 684 IVLDEVGRGTSTYDGLSIGWAISEYLAEKVKVKTLFATHYHELTQLEREIKGVKNFHMDI 743 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK---------LY 843 + E I FL++V G ++ SYG+ V KLAG+ +I RAY+IL FE+ +Y Sbjct: 744 FEDGENIKFLYRVKEGFSNKSYGVHVAKLAGIKEQIIKRAYEILYYFEEQRDKKLEEDIY 803 Query: 844 HHNQKDMRLYYPEIQT----KESKNNLSKNDKLFVEKIKCLNLDEMSPLTAL 891 QK+ Y EI KE ++ + +E+I+ +++ ++P+ AL Sbjct: 804 SLKQKE-NSYLNEINELPLFKEIEDIEKDEYRQILEEIESIDIGSITPVEAL 854 >gi|238761665|ref|ZP_04622640.1| DNA mismatch repair protein mutS [Yersinia kristensenii ATCC 33638] gi|238700179|gb|EEP92921.1| DNA mismatch repair protein mutS [Yersinia kristensenii ATCC 33638] Length = 851 Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust. Identities = 317/883 (35%), Positives = 491/883 (55%), Gaps = 43/883 (4%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 + L S TPMM+QY +K+ +PD L+FYRMGDFYELF+ DA AS+ L I+LTKRG G+ Sbjct: 5 DKLDSHTPMMQQYHRLKAQHPDILLFYRMGDFYELFYSDAKRASQLLDISLTKRGSSAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H+ +Y+ KL+++G AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGVPYHSIENYLAKLVQLGESAAICEQIGDPATSK-----GPVERKVVRIVTPGTV 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F+++ ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDARGFGYATLDISSGRFRVAEPADLETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 + E + E SL E + +P F+ ++ ++ + + FG S Sbjct: 180 YPE----NFEPMSLIEHRHGLR-RRPLWEFELETAKQQLNLQFGTRDLIGFGVEQSHQAL 234 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA + Y+K TQ + P I E Q + +D+A R NLE+ + LSG E +L Sbjct: 235 RAAGCLLQYVKDTQRTSLPHIRGLTMERQQDGIVMDAATRRNLELTQNLSGGTENTLAAI 294 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D S+T G R+ + P+ D+ + R +I +QN + +Q L+ D+ R Sbjct: 295 LDCSVTAMGSRMLKRWLHMPIRDTKVLTDRQQAIGG-LQN--ITAELQTPLRQVGDLERI 351 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKTL 435 L+RL + P+D+A +R + I L D+P + L V + +L LE+ + Sbjct: 352 LARLALRTARPRDLARMRHAFQQLPEIHRLLQPLDVPHIQNLLSQVGQFDELQDLLERAI 411 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + P RDGG + G +A LDE R+L D + + L+++ E+ + LK+ Sbjct: 412 V----ETPPVLVRDGGVIAPGYNAELDEWRALADGATDYLDRLEIREREKLGLDTLKVGF 467 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GYFI+V+ + ++ ++ RQT+ N R+ EL + E+++ + AL Sbjct: 468 NGVHGYFIQVSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSKGKAL 521 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 IE +E + + ++ L ++ +A +D+ LA A+ NY P++ + + Sbjct: 522 AIEKGLYEEIFDLLLPHLSELQISANALAELDVLANLAERAETLNYNCPVLSDKPGIKIT 581 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ L S+PFI+N LS ++ ++TGPNMGGKST++RQ ALIV+ Sbjct: 582 GGRHPVVEQVL----SEPFISNPLTLSPQR-----RMLIITGPNMGGKSTYMRQTALIVL 632 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +A MGSYVPA+ A IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT QS V++ Sbjct: 633 LAHMGSYVPAAQATIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEQSLVLM 692 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 693 DEIGRGTSTYDGLSLAWACAENLASRIKAMTLFATHYFELTTLPEKMEGVVNVHLDALEH 752 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 E I F+H V G A SYG+ V LAG+P VI RA LK E L +N ++ Sbjct: 753 GETIAFMHSVQDGAASKSYGLAVAALAGVPRDVIKRARQKLKELESL-SNNAAASKIDGS 811 Query: 856 EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ L++ VE ++ L+ D +SP AL+ +Y +K Sbjct: 812 QLTL------LNEEVPPAVEALEALDPDSLSPRQALEWIYRLK 848 >gi|307129843|ref|YP_003881859.1| methyl-directed mismatch repair protein [Dickeya dadantii 3937] gi|306527372|gb|ADM97302.1| methyl-directed mismatch repair protein [Dickeya dadantii 3937] Length = 852 Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust. Identities = 314/890 (35%), Positives = 486/890 (54%), Gaps = 54/890 (6%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E+L + TPMM+QY+++K+ +PD L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ESLDAHTPMMQQYLKLKAQHPDILLFYRMGDFYELFYDDARRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H +Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGVPHHAVENYLAKLVQLGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFK-ISTSNHDRLISDIMRIDPREII 198 +++ LL N L AV + + A +DIS+G F+ + + + + +++ R +P E++ Sbjct: 120 SDEALLQEKQDNLLAAVWQEGRGFGYATLDISSGRFRLVEPVDRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 + E E SL E + +P F+ + ++ + + FG + + Sbjct: 180 YPET----FEAMSLIEHRHGLR-RRPLWEFELDTARQQLNLQFGTRDLTGFGVEQAHMGL 234 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA + Y K TQ + P I E Q + +D+A R NLE+ + LSGS E +L Sbjct: 235 RAAGCLLQYAKDTQRTSLPHIRSITVERQQDGIIMDAATRRNLELTQNLSGSGENTLASV 294 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D ++T G R+ + +P+ D+ + R +I + +Q L+ D+ R Sbjct: 295 LDRTVTPMGSRMLKRWLHAPIRDAQALLRRQQAIGALRD---VAAELQPYLRQVGDLERI 351 Query: 378 LSRLKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 L+RL + P+D+A +R + I++L + + ++LR V + +L LE+ + Sbjct: 352 LARLALRSARPRDLARMRHAFQQLPDIHVLLETVGAEAVQQLRTQVGQFDELRDLLERAV 411 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + P RDGG + G + LDE R L D + + L+++ + I LK+ Sbjct: 412 V----EAPPVLVRDGGVIAGGYNDELDEWRMLADGASDYLEKLEIRERDRLGIDTLKVGF 467 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+I+V+ + ++ + ++ RQT+ N R+ EL + E+++ + AL Sbjct: 468 NGVHGYYIQVSRGQSHLVPMN------YVRRQTLKNAERYIIPELKEYEDKVLTSKGKAL 521 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E +E L + ++ L ++ +A +D+ LA A NY P + + + Sbjct: 522 ALEKALYEELFDLLLPHLADLQQSAGALAELDVLTNLAERADTLNYVCPTLSDKPGIRIT 581 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ L S+PFIAN LS +L ++TGPNMGGKST++RQ ALIV+ Sbjct: 582 GGRHPVVEQVL----SEPFIANPLSLSPQR-----RLLIITGPNMGGKSTYMRQAALIVL 632 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MA +GSYVPA A IG VD++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT QS V++ Sbjct: 633 MAHIGSYVPAEQAVIGPVDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEQSLVLM 692 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA E L + L ATH+ ELT+L + ++ N L + Sbjct: 693 DEIGRGTSTYDGLSLAWACAEALANKIKAMTLFATHYFELTNLPEKMEGVINIHLDALEH 752 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH------NQKD 849 + I F+H V G A SYG+ V LAG+P VI RA LK E L H + Sbjct: 753 GDTIAFMHSVQEGAASKSYGLAVAALAGVPKEVIKRARQKLKELESLAGHASASHVDGSQ 812 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + L PE + ++ ++ ++ D ++P AL LY +K Sbjct: 813 LALLAPEEPSPA------------LDALEAIDPDALTPRQALDWLYKLKG 850 >gi|328948686|ref|YP_004366023.1| DNA mismatch repair protein mutS [Treponema succinifaciens DSM 2489] gi|328449010|gb|AEB14726.1| DNA mismatch repair protein mutS [Treponema succinifaciens DSM 2489] Length = 863 Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust. Identities = 323/903 (35%), Positives = 507/903 (56%), Gaps = 60/903 (6%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + TP++ QY+ IK +P+ ++F+R+GDFYE+F +DAL SR L +TLT +G D Sbjct: 1 MAEETPVITQYLGIKKQHPNDVLFFRLGDFYEMFNEDALEVSRLLNLTLTHKG-----DN 55 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCG+P H+A YI +L+++G ++A+ EQ+ E KRG L R VV +VTPGT E Sbjct: 56 PMCGIPYHSAKGYIARLLRMGKKVAVAEQVG---EVAKRG---LTERKVVEVVTPGTAVE 109 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIM----RIDPREI 197 + L +N+L ++ +A+ID++TG F+ + + ++ R P+EI Sbjct: 110 SEYLDGGSNNFLASIFISGGFAGLAYIDVTTGEFRATKFPEYKFAENVSKELGRCSPKEI 169 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 I E ++ E +++ ET+ +V+ P+ F+ + + + + +++F + Sbjct: 170 ILPESLKNNKEIQTILETISVASVSWYPDWHFNAEKNYEHLVKQFKVANLNSFSLTKESP 229 Query: 256 EKTAAAAAISYIKKTQMVNKPTI---GYPEREDIQSTLFIDSAARSNLEILRTL-SGSRE 311 E A + YI+KT N P G +D Q + ID ++R NLEI L G+ Sbjct: 230 EVPPAGFLLDYIEKT--TNAPVSHISGISVYQDSQFVI-IDDSSRRNLEITFNLRDGTSS 286 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 +LL+++ + T G RL ++ PLT+ +IN+R + + F+++ L++ +++ L Sbjct: 287 YTLLESVSNTKTAMGSRLLRSWLSFPLTNENEINSRQNHVELFVKDRNLLHCVRENLDGI 346 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSL 431 DV R R+ + R KD+ ++ ++ + + + D + + +K+ L Sbjct: 347 LDVERLAGRIAMDRAHAKDLQALKASLKFWLKSQAVLERYDFSMPEKDSAQKIIDL---- 402 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + + +++D T +G ++DG LD + +R+ I+ E+T I+NL Sbjct: 403 ---IENSIAEDPATVFTEGRIIKDGWSEELDYWKKVRNDFNGILEEYIESEKEKTGIQNL 459 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 KIK NLGYFIEVT + FI R+T+ N R+TT +L +LEN + + Sbjct: 460 KIKSTGNLGYFIEVTKGKLDKIPP------HFIMRRTLLNAERYTTEKLQELENSLNESG 513 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP-IIDNST 610 L +E F + N + + L A++ IA +D+ + A A N+ RP ++ +S Sbjct: 514 AKILELEHNLFIEVRNELKKYIPYLQQAAKKIAYVDVVCSFAESAILYNWNRPHVLSDSL 573 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 F VK+GRHP+VE+ L + F+ ND L +NS L+TGPNM GKSTFLRQN Sbjct: 574 EFSVKNGRHPVVERHL---PAGEFVPNDVSLCGSEPENSASFALITGPNMAGKSTFLRQN 630 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI ++AQ GS+VPA A+IGIVD++F RVG++DNLA G STF+VEM ETA IL AT Sbjct: 631 ALIALLAQTGSFVPADEANIGIVDRIFCRVGASDNLARGESTFLVEMTETARILRSATQN 690 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLS-KSLKRFHNAT 789 S VI+DE+GRGT+T DGLSIAWA EYL T +C+ ATH+HELT L KSLKR Sbjct: 691 SLVIMDEVGRGTSTEDGLSIAWAVSEYLLNTLKCKTFFATHYHELTRLEHKSLKRL---C 747 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 + V+++ I+FL KV+ G +++SYGI V +LAG+P +VI RA IL EK+ Q D Sbjct: 748 MAVAENGSDIVFLRKVVEGSSENSYGIHVARLAGIPESVIERAGKIL---EKI----QGD 800 Query: 850 MRLYYPEIQTKE-SKN-------NLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWT 901 + PE +T+E SKN +L ++L +++I ++D M+P+ AL+ + K Sbjct: 801 ASVIIPETETEEVSKNKVEIFSGSLFSEEELVLDEILSCDIDNMTPMVALQNILRWKKSL 860 Query: 902 LEK 904 EK Sbjct: 861 AEK 863 >gi|323492971|ref|ZP_08098109.1| DNA mismatch repair protein MutS [Vibrio brasiliensis LMG 20546] gi|323312802|gb|EGA65928.1| DNA mismatch repair protein MutS [Vibrio brasiliensis LMG 20546] Length = 854 Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust. Identities = 305/885 (34%), Positives = 487/885 (55%), Gaps = 47/885 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 + TPMM+QY+++K+ NPD L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IP Sbjct: 5 QKHTPMMQQYLKLKAENPDILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIP 64 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+T++ Sbjct: 65 MAGVPFHAVEGYLAKLVQLGESVAICEQIGDPATSK-----GPVERAVVRIVTPGTVTDE 119 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSE 201 LLS N + A+ ++ A +D+++G F++ + + +++ R PRE++F E Sbjct: 120 ALLSERLDNLIAAIYHHNGKFGYATLDVTSGRFQLMEPETEEAMAAELQRTAPRELLFPE 179 Query: 202 KELSHAEYKSLFETLG-----NVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 FE + N +P F+ ++ ++ + + FG +++ Sbjct: 180 D----------FEPVQLMNGRNGNRRRPVWEFELDTAKQQLNQQFGTKDLVGFGVEHAKL 229 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA I Y+K TQ P I + ++ +D+A R NLEI L+G + +L Sbjct: 230 GLCAAGCLIQYVKDTQRTALPHIRSLTFDRQDHSVILDAATRRNLEITHNLAGGTDNTLA 289 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 + +D++ T G R+ + P+ D +N RLD+I + + + +LK D+ Sbjct: 290 EVLDHTATAMGSRMLKRWLHQPMRDIDTLNQRLDAITEVKEQAVYAE-LHPVLKQIGDIE 348 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEK 433 R L+RL + P+D+A +R ++ + + L N +L + + Q LE+ Sbjct: 349 RILARLALRSARPRDMARLRFAMQQLPELADCMGSLSNSYLAKLAQFAAPMDDVCQLLER 408 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + ++ P RDGG + G + LDE R L D + + L+ + E I +LK+ Sbjct: 409 AIK----ENPPVVIRDGGVIASGYNEELDEWRKLADGATEYLEQLEQEERERHGIDSLKV 464 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +NN G+FI+V+ + ++ ++ RQT+ N R+ EL + E+++ N+ + Sbjct: 465 GYNNVHGFFIQVSRGQSHLVPP------HYVRRQTLKNAERYIIPELKEHEDKVLNSKSK 518 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E + +E L + ++ E + N + I+ ID+ LA A +YCRP + Sbjct: 519 ALAVEKQLWEELFDLLLPHLEQMQNLASAISQIDVLQNLAERADSLDYCRPSLTKEAGIQ 578 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +++GRHP+VE+ + + PFIAN +L+ S K+ ++TGPNMGGKST++RQ ALI Sbjct: 579 IQNGRHPVVEQVMDE----PFIANPIELNP-----SRKMLIITGPNMGGKSTYMRQTALI 629 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V Sbjct: 630 ALMAHIGSYVPAEAAQIGSIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATANSLV 689 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA+ E+L + L ATH+ ELT+L + N L Sbjct: 690 LMDEIGRGTSTYDGLSLAWASAEWLAKQLGSMTLFATHYFELTELPNQIPHLANVHLDAV 749 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 + + I F+H V G A SYG+ V LAG+P +VI A L E++ + Sbjct: 750 EHGDSIAFMHAVQEGAASKSYGLAVAGLAGVPKSVIKNARAKLTQLEQIGQGSNTSSVSP 809 Query: 854 YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +I + S L + + ++ D+++P AL+ LY +K Sbjct: 810 AVDIANQLS---LIPEPSEVEQALSNIDPDDLTPRQALEELYRLK 851 >gi|88798289|ref|ZP_01113875.1| DNA mismatch repair protein [Reinekea sp. MED297] gi|88779065|gb|EAR10254.1| DNA mismatch repair protein [Reinekea sp. MED297] Length = 862 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 303/882 (34%), Positives = 486/882 (55%), Gaps = 49/882 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY++IK +PD LVFYRMGDFYELFFDDA LA++ L ITLTKRG+ G+ IPM G Sbjct: 12 TPMMQQYLKIKKQHPDDLVFYRMGDFYELFFDDAKLAAKLLDITLTKRGQSGGQPIPMAG 71 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H A +YI +L++ G +AICEQI P +K V R VVR++TPGTL+++ L Sbjct: 72 IPFHAAENYIARLVQQGQTVAICEQIGDPATSK-----GPVERQVVRVLTPGTLSDEAYL 126 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSEKEL 204 + L A+ WAIA +D+++G F + T + ++++ R+ PREI+++E + Sbjct: 127 QDRQESLLAALFNHAETWAIAVLDVASGRFNVLQTPTQEEALNELERLKPREILYAEDQT 186 Query: 205 SHA-EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK-TAAAA 262 + Y++ + AQP FD + ++ + ++ FG + E AA Sbjct: 187 QYELSYQATWR-------AQPVWLFDLDSAVEQLNHQFGTKSLSGFGVETLTEALRAAGC 239 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 ++Y ++TQ P + E ++ +DSA R NLEI + G +L +D+ Sbjct: 240 LLNYARETQRGELPHVNAIAPELTSDSVILDSATRRNLEIDINVRGEESHTLFALMDHCS 299 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G R + PL D ++ R ++ + + Q+ LK D+ R L+R+ Sbjct: 300 TAMGSRRLRRWLNRPLRDQDQLRQRQAAVAILLDD-FRFEQFQQHLKPIGDIERVLARVA 358 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + P+D+ +R+ + + ++ +L N++ + LR +L P+ L++ L S + Sbjct: 359 LRSARPRDLIRLREALAAQTDLQSLLETCDNNVLQTLRS---QLNVDPKWLDE-LRSAIR 414 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D+ P R+GG + +G D LDE R L + +A ++ T + +LK+ +N G Sbjct: 415 DNPPVVIREGGVIAEGYDHELDELRGLDSNAADFLAEMETTERNRTGLSSLKVGYNRVHG 474 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IE++ + A+ ++ + RQT+ N RF T EL E++ +A + AL E Sbjct: 475 YYIEISKAQAA------DAPVEYTRRQTLKNAERFITPELKTFEDKALSARSRALAREKH 528 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 ++ L + E L + + +D+ + LA A ++ +P + + ++ GRHP Sbjct: 529 LYDELVQKLAENLPGLQQFCEGLIELDVLVNLAHCADRFDWNQPELTHQNILTIEGGRHP 588 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE + PF+ N LS + ++ ++TGPNMGGKST++RQ ALI ++ +G Sbjct: 589 VVEAL----NDTPFVPNSTQLS-----SDCRMQIITGPNMGGKSTYMRQVALIALLGCIG 639 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA A IG +D++F+R+GS+D++A GRSTFMVEM ETA+IL+ AT S VI+DE+GR Sbjct: 640 SFVPADRAVIGPLDRIFTRMGSSDDIAGGRSTFMVEMTETANILHNATPNSLVIMDEVGR 699 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GT+T DGLS+AWA+ E L + L ATH+ E+T L ++ N L ++ ++ ++ Sbjct: 700 GTSTFDGLSLAWASAEQLVSQVQALTLFATHYFEMTTLGETENAVQNVHLDATEHDDRLV 759 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 FLH+V G A SYGIQV KLAG+P TVI+RA L E Q PE Sbjct: 760 FLHRVQEGPASQSYGIQVAKLAGVPETVITRARQRLAELEA-----QPSAPTVKPEPSRT 814 Query: 861 ESKNNLSKNDKLF-------VEKIKCLNLDEMSPLTALKTLY 895 ++ LF +++++ L+LD ++P AL+ LY Sbjct: 815 AVVDSAPAQADLFATAQHPIIDELEQLDLDNLTPRQALEWLY 856 >gi|257094871|ref|YP_003168512.1| DNA mismatch repair protein MutS [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047395|gb|ACV36583.1| DNA mismatch repair protein MutS [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 848 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 306/876 (34%), Positives = 477/876 (54%), Gaps = 35/876 (3%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY+ IK+ +PD L+FYRMGDFYELFFDDA ASR L ITLT RG+ G+ I M GVP Sbjct: 1 MMQQYLRIKAQHPDLLLFYRMGDFYELFFDDAEKASRLLDITLTTRGQSAGQPIKMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H Y+ KL+++G + ICEQI P +K V R V R+VTPGTLT+ LL Sbjct: 61 YHAVEQYLAKLVRLGESVVICEQIGDPAT-----SKGPVERAVARIVTPGTLTDAALLDE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHA 207 L+A++ R +AWI++++G F++ +L + + RI P EII E Sbjct: 116 KRDTLLLALSVTRQLAGLAWINLASGDFRVCEVAPGKLAATLERIRPAEIIVPE------ 169 Query: 208 EYKSLFETLGNVAV--AQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI- 264 SL + AV +P+ FD ++ + ++ +++ FG+ AAA A+ Sbjct: 170 ---SLVPSFAPDAVLARRPDWHFDSETAQRELCAHFGTSSLAGFGTDGLRPAIAAAGALL 226 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 Y + TQ P + E + L +D+A R NLE+ TL G +L +D T Sbjct: 227 RYAQATQARALPHLQALIVERDATFLGMDTATRRNLELTETLRGQPAPTLYSLLDNCSTA 286 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNP-ILINPIQKILKSSPDVPRSLSRLKI 383 G RL + P D + R +I + + + +++ L+ D+ R R+ + Sbjct: 287 MGSRLLRHALHHPWRDPAIPSARHAAIAMLLDDGGCTLRELRQSLRGLADIERIAGRIAL 346 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 P+D++ +RD + ++ L L L +L +L+ LS + + Sbjct: 347 FTARPRDLSSLRDSLHR-LDPLRAPLAATAAPMLAELHAQLTTPALALD-LLSRAILPEP 404 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 RDGG + G D DE R+L D + +++ + E T I NLK+++N G++I Sbjct: 405 AALIRDGGVIAGGFDTEFDELRTLNDNCGAYLLAIEARERERTGIANLKVEYNRVHGFYI 464 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EVT+++A+ + D + RQT+ N R+ T EL E++ +A AL E +E Sbjct: 465 EVTNANATKVPDD------YRRRQTLKNAERYLTPELKAFEDKALSAQERALTREKLLYE 518 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 + ++ + L + +A +D+ A A+ +NYCRP+ + +++ GRHP+VE Sbjct: 519 GVLTSLQADLQQLQTIAHAVASLDLLAGFAESARLRNYCRPLFSSEPGLLIEGGRHPVVE 578 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 L + FIAN+ L+ + +L L+TGPNMGGKST++RQ ALI ++A +GSYV Sbjct: 579 GQLA--GGETFIANETRLT-----DERRLLLITGPNMGGKSTYMRQTALIALLAHVGSYV 631 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA+ A +G +D++F+R+G+AD+LA GRSTFMVEM E+A+IL+ AT +S V++DE+GRGT+ Sbjct: 632 PATRAVLGPLDQIFTRIGAADDLAGGRSTFMVEMTESAAILHHATERSLVLMDEVGRGTS 691 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DG+++A+A +L E NRC L ATH+ ELT L+ N L + + I+FLH Sbjct: 692 TFDGMALAFAICRHLIEKNRCLTLFATHYFELTLLANEYGELANVHLDAVEHGQRIVFLH 751 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESK 863 V G A+ SYGIQV LAG+P+ V+ A L+ FE+ N L+ + + Sbjct: 752 AVEEGPANQSYGIQVAALAGIPSPVVRAARRQLREFEQRASINPLQPDLFATALANAADE 811 Query: 864 NNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 L + VE++ ++ D+++P AL LY +K+ Sbjct: 812 RELPIHPA--VERLASIDPDQLTPREALDALYELKS 845 >gi|212212527|ref|YP_002303463.1| DNA mismatch repair protein MutS [Coxiella burnetii CbuG_Q212] gi|212010937|gb|ACJ18318.1| DNA mismatch repair protein [Coxiella burnetii CbuG_Q212] Length = 871 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 316/894 (35%), Positives = 490/894 (54%), Gaps = 67/894 (7%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 + + TPMMRQY+ IK+ PD LVFYRMGDFYELF+DDA A++ L ITLT RG+ G Sbjct: 23 QNDFSQHTPMMRQYLRIKAEYPDLLVFYRMGDFYELFYDDAKKAAKLLNITLTARGQSAG 82 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 IPM GVP H +Y+ KL+++G + ICEQI P +K V R V R++TPGT Sbjct: 83 HAIPMAGVPYHAVENYLTKLVRLGESVVICEQIGDPATSK-----GPVAREVTRIITPGT 137 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N LM + + + + IA +DI++G F I + + L ++I RI P E+ Sbjct: 138 VSDEALLDEHRDNTLMVIHQEKDRFGIATLDITSGRFLIQEIISENALFAEIERIRPAEL 197 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVE 256 + SE+ S+ + +P FDH+ + + + + ++D FG + + Sbjct: 198 LISEE-------NSVHPLKADSIKRRPPWEFDHATALTLLCQQFQTKSLDGFGITHLPLA 250 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 TAA + Y+ TQ P I + E + LFID+ R NLE++ L G SL Sbjct: 251 ITAAGCLLQYVNYTQKSALPHIHSIQAEQNEEALFIDANTRLNLELITNLQGEEVHSLAW 310 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D++ T G RL I PL D + R ++++ ++ + I + L+ D+ R Sbjct: 311 LLDHTATAMGSRLLRRWINRPLRDQILLQQRQNAVSTLLEKRNY-SEIYENLRHIGDLER 369 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGI------NILNLFLKNDLPEELRGAVEKLKKLPQS 430 ++R+ + P+D+ +R + G+ + NL L L +E++ + +L + Sbjct: 370 IVARIALRSARPRDLMQLRQAL--GVLPTLHQQLTNLPLNKQL-QEIKNNLGLFDELFRL 426 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L+K + ++ P RDGG + DG DA LDE R++ S + + L+ + E TKI Sbjct: 427 LQKAII----ENPPIVIRDGGVIADGYDAPLDELRNMSTNSHQFLIDLEQQERERTKINT 482 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ +N GY+IE++ A ++ +I RQT+ N+ R+ T EL E+++ ++ Sbjct: 483 LKVGYNRIHGYYIEISRVQAK------QAPTEYIRRQTLKNVERYITPELKIFEDKVLSS 536 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 + AL E E +E L + +IE+ L + IA +D+ LA A N+ P + Sbjct: 537 RSRALAREKELYEQLLDTLIEKLIPLQQCASAIANLDVLNTLAERADTLNFNAPQFCDYP 596 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 ++ GRHPIVE + + PF+ ND L ++ ++TGPNMGGKST++RQ Sbjct: 597 IIKIEAGRHPIVENVM----TDPFMPNDIHLD-----EKRRMLIITGPNMGGKSTYMRQT 647 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI ++A +GS+VPA A +G +D++F+R+G+AD+LASGRSTFMVEM ETA+IL+ AT + Sbjct: 648 ALITLLAYIGSFVPAKNAQLGPIDRIFTRIGAADDLASGRSTFMVEMTETAAILHNATEE 707 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V++DE+GRGT+T DGLS+A+A YL + L ATH+ ELT L+ +L N L Sbjct: 708 SLVLMDEVGRGTSTFDGLSLAYACASYLATKLKAFALFATHYFELTALASTLPAVKNVHL 767 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM 850 + E IIFLH + G A+ SYG+QV +LAG+P +VI H QK Sbjct: 768 DAVEHEEKIIFLHALREGPANKSYGLQVAQLAGIPRSVIQ-------------HARQKLE 814 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVE-------KIKCLNLDEMSPLTALKTLYAV 897 L P I S+ + ++LF+ ++ LN D ++P AL LY + Sbjct: 815 ELENPVI----SETQQPQQNELFLPIENPVLTQLDKLNPDNLTPKQALDILYQL 864 >gi|257126782|ref|YP_003164896.1| DNA mismatch repair protein MutS [Leptotrichia buccalis C-1013-b] gi|257050721|gb|ACV39905.1| DNA mismatch repair protein MutS [Leptotrichia buccalis C-1013-b] Length = 892 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 311/921 (33%), Positives = 522/921 (56%), Gaps = 83/921 (9%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 + TP+M+QY EIKS DS++F+R+GDFYE+FF+DA+ AS+ LG+TLT R K D+P+ Sbjct: 2 ADTPLMKQYREIKSNFEDSILFFRLGDFYEMFFEDAVKASKELGLTLTSRNKEKNADVPL 61 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H+A+ YI KL+ G+++AICEQ E P AK +V+R VV+++TPGT+ + + Sbjct: 62 AGVPFHSADSYITKLVSKGYKVAICEQTEDPKMAK-----GIVKREVVKIITPGTVVDVE 116 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD----RLISDIMRIDPREIIF 199 L +NYLM++ +I + IA+IDI+TG FK++ D +L ++I +I+P+E++ Sbjct: 117 ALDAKSNNYLMSILKIENKIGIAYIDITTGEFKVTEVEKDADFVKLFNEINKIEPKEVLV 176 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVF-FDHSISES--RIADYYNITTVDTFGSFSQVE 256 +E Y+ + E L + +V F I +S + DY+ I +++++G + Sbjct: 177 TEDF-----YREIKEKLDDFLQKNDSVVTFVSKIRDSAKYLMDYFEIVSLESYGIKDKKG 231 Query: 257 KTAAAAAISYIKKT-QMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ--- 312 AAA Q+ ++ T+ E +I + I++ NLE+L+ RE+ Sbjct: 232 IIGAAAMALDYAAAMQVEHELTVEKIEFVNISNYAEINAITSRNLELLKN---QREKTVY 288 Query: 313 -SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 SLL +D T G RL I +PL + KI R + + +FI N ++ +++ L+ Sbjct: 289 GSLLWVLDECKTSMGTRLLKRFINNPLLNIEKIRKRQEDVQYFIDNILIREDLREKLEDI 348 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSL 431 D+ R L ++ G KD+ ++ I+S + I+ + D + + + L + Sbjct: 349 YDLERLLGKIIFGSENGKDLTALKKTIKSAVEIMKILENTDFFKNIDANI-----LFECY 403 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 K + +++D P R+GG ++ G + LDE R++ + K + ++ + E T IKN+ Sbjct: 404 -KIIDDSINEDAPFSVREGGIIKSGYNEELDEIRNIMNSGKDFLLDIEQRERETTGIKNM 462 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 KIK N GYFIE+T S+ S++ + +I +QT+SN R+ T EL E+ I N+ Sbjct: 463 KIKFNKVFGYFIEITKSNLSMVP------EHYIRKQTLSNSERYITPELKKYEDTIINSK 516 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 +E F+ ++ I E + L ++ +A ID+ ++ A+ A E +Y +P ++ + Sbjct: 517 AKIEDLEYHLFKEINGKIKEHRKILSELAERLAYIDVMVSFAVSAIENDYAKPEMNEEYS 576 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 F ++DGRHP+VEK + + +++ND + +K S +LTGPNM GKST+++Q A Sbjct: 577 FEIEDGRHPVVEKLIGRTD---YVSND---TVFTEKES--FVVLTGPNMSGKSTYMKQIA 628 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LI IMAQ+GS+VPA A++ ++DK +R+G++D++ +G+STFMVEM E ++ILN AT +S Sbjct: 629 LISIMAQIGSFVPAKKANLSVIDKYLTRIGASDDILTGQSTFMVEMSEVSNILNNATEKS 688 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 +ILDE+GRGT+T DG+SIA A + Y+H+ + + ATH+HELTDL N ++ Sbjct: 689 LIILDEVGRGTSTTDGVSIATAILMYIHDKIGAKTVFATHYHELTDLENKFAHIVNYRIE 748 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK---------- 841 V + ++FL ++ G AD SYGI+V KLAGLP ++ + ILK E+ Sbjct: 749 VDEKQGKVMFLRNIVKGGADKSYGIEVAKLAGLPKEILVESKKILKRLEQKKELIERTVD 808 Query: 842 -----LYH------------------HNQKDMRLYYPEI-QTKESKNNLSKNDKLFVEKI 877 L+ N ++ + Y ++ Q +E K +L + V KI Sbjct: 809 VHQLSLFGENLEFESDFEEFENANDLENSENNQFYEKKLAQIEEEKESLIE----IVNKI 864 Query: 878 KCLNLDEMSPLTALKTLYAVK 898 + +++ M+P+ A+K L+ +K Sbjct: 865 ENYDINNMTPMDAMKFLFELK 885 >gi|107103134|ref|ZP_01367052.1| hypothetical protein PaerPA_01004203 [Pseudomonas aeruginosa PACS2] Length = 846 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 312/883 (35%), Positives = 485/883 (54%), Gaps = 52/883 (5%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY ++K +PD L+FYRMGDFYELF++DA A++ L ITLT RG+ GK IPM G+P Sbjct: 1 MMQQYFKLKHQHPDQLMFYRMGDFYELFYEDAKKAAKLLDITLTARGQSGGKAIPMAGIP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H+A Y+ KL+K+G +AICEQI P +K V R VVR++TPGT++++ LL Sbjct: 61 FHSAEGYLAKLVKLGESVAICEQIGDPAT-----SKGPVERQVVRIITPGTVSDEALLDE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKELSH 206 N L A+ + +A +DI++G F + + L++++ R++P E++ + Sbjct: 116 RRDNLLAAILGDERLFGLAVLDITSGRFSVQEIKGWETLLAELERLNPAELLIPD----- 170 Query: 207 AEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA-I 264 ++ V + + FD + + + + FG + AA + Sbjct: 171 -DWPQGLPAEKRRGVRRRAPWDFDRDSAHKSLCQQFGTQDLKGFGCQNLTLAIGAAGCLL 229 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 +Y K+TQ P + + + T+ +D A+R NLE+ LSG RE +L +D T Sbjct: 230 AYAKETQRTALPHLRSLRHDRLDDTVILDGASRRNLELDINLSGGRENTLQSVVDRCQTA 289 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 RL + + PL D + R +SI ++ N +Q LK D+ R L+R+ + Sbjct: 290 MASRLMSRWLNRPLRDRAVLEARQESIACLLERYRFEN-LQPQLKEIGDLERILARIGLR 348 Query: 385 RGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLP 444 P+D+A +RD + + ++ N + + P L+ + P+ L + L+ + D+ P Sbjct: 349 NARPRDLARLRDALAALPDLQNAMTELEAP-HLQALATTIGTYPE-LAELLAKAIIDNPP 406 Query: 445 TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIE 504 RDGG ++ G DA LDE ++L + + + + L+ + T + NLK+ +N GYFIE Sbjct: 407 AVIRDGGVIKTGYDAELDELQALSENAGQFLMDLEAREKARTGLPNLKVGYNRIHGYFIE 466 Query: 505 VTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEI 564 + A D +I RQT+ RF T EL E++ +A + AL E +E Sbjct: 467 LPRVQAEQAPAD------YIRRQTLKGAERFITPELKAFEDKALSAQSRALAREKALYEE 520 Query: 565 LSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEK 624 L +I L +++ +A +D+ LA A + RP T ++ GRHP+VE+ Sbjct: 521 LLERLIGHLAPLQDSASALAELDVLANLAERALNLDLNRPRFVEHTCLHIEQGRHPVVEQ 580 Query: 625 TLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684 L+ PF+AND L ++ ++TGPNMGGKST++RQ ALIV++A +GS+VP Sbjct: 581 VLE----TPFVANDLALDA-----DTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVP 631 Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744 A+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V++DE+GRGT+T Sbjct: 632 AARCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTST 691 Query: 745 LDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHK 804 DGLS+AWA E L T R L ATH+ ELT L +S N L ++ NE I+FLH Sbjct: 692 FDGLSLAWAAAEDLART-RAFTLFATHYFELTVLPESQPAVANVHLNATEHNERIVFLHH 750 Query: 805 VIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--KLYHHNQKDMRLYYPEIQTKES 862 V+PG A SYG+ V +LAG+P VI RA + LK E L H P Q+ + Sbjct: 751 VLPGPASQSYGLAVAQLAGVPAPVIQRAREHLKRLETTSLPHE--------MPSQQSGKP 802 Query: 863 KNNLSKNDKLF-------VEKIKCLNLDEMSPLTALKTLYAVK 898 + + + LF ++++ +N D++SP AL LYA K Sbjct: 803 ASPMQSD--LFASLPHPVIDELSRINPDDISPRQALDLLYAWK 843 >gi|15618850|ref|NP_225136.1| DNA mismatch repair protein MutS [Chlamydophila pneumoniae CWL029] gi|4377264|gb|AAD19079.1| DNA Mismatch Repair [Chlamydophila pneumoniae CWL029] Length = 828 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 313/827 (37%), Positives = 460/827 (55%), Gaps = 30/827 (3%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TPMM Q+ + K DS++ +RMGDFYE F+DDA+L S+ L +TLT+R + IP Sbjct: 4 KKPTPMMEQWHQCKEKAGDSVLLFRMGDFYEAFYDDAVLLSQHLELTLTQR-----QGIP 58 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M G+PV T + Y+ +LI G ++A+ EQ P + K+ + R++ R VTPGTL Sbjct: 59 MSGIPVSTVDTYVDRLIGKGFKVAVAEQFGEPAKEKESKKIGPMARDIQRFVTPGTLLSS 118 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII--- 198 LL +NY++A+ RI + + A +D+STG F I N L+ +I R+ P E++ Sbjct: 119 TLLQEKFNNYIVAINRIGSLFGFACLDLSTGSFFIEECENTKELVDEICRLAPSEVLSCN 178 Query: 199 -FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 F KE A L + L + F+H + ++ ++ + ++D FG V Sbjct: 179 KFYNKET--AIVMQLQQHLKLTLSTYADWAFEHKFASQKLTTHFQVASLDGFGLKGLVPA 236 Query: 258 -TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR-EQSLL 315 AA +SYI+ ++ I P+ Q L ID+A++ NLE+L L+ + + SLL Sbjct: 237 INAAGGLLSYIQDKLLLPTKHIAIPQTRGKQQKLLIDTASQVNLELLAPLNDPQGKNSLL 296 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 + +D++ T GGRL + + SP + +I R D++ FF++ L I+ L D+ Sbjct: 297 RIMDHTSTPMGGRLLRQILISPFYNPKEILVRQDAVEFFLRQVTLRKNIKTYLCQVRDIE 356 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R ++++ G P+DI +RD +G I LPE KL SL L Sbjct: 357 RLMTKVTTGLAGPRDIGTLRDSFSAGAQIYEQLASATLPEFFIDKCSLDTKLA-SLIALL 415 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 S L+ DLP DG D L R ++ S+ I Q + +ET IK LKI Sbjct: 416 SKSLNGDLPLRVSDGNIFVDEFHNDLKRLRHNQEHSQEWIWEYQERIRKETGIKKLKICF 475 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 LGY+IEV+S A L KD FI RQ+ + RFTT+EL ++ ++N + Sbjct: 476 AQALGYYIEVSSEFAPQLPKD------FIRRQSRLHAERFTTIELQQFQDDMSNISEKLQ 529 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E + F+ L + I++ + SQ +A +D I+LA LA Q YCRP +D S + Sbjct: 530 TLETQFFKDLCSHILQLRTEILALSQSLADLDYIISLADLAHAQGYCRPHVDMSDTLCIY 589 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 G HP V KTL + FI ND ++ + ++ LLTGPNM GKST++RQ AL+VI Sbjct: 590 RGCHP-VAKTLV--DTGKFIPNDTEMR----GSQTRMILLTGPNMAGKSTYIRQIALLVI 642 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQMGSY+PA AHIG++DK+F+R+G+ DNL+ G STFMVEM ETA+IL+ AT++S VIL Sbjct: 643 MAQMGSYIPAKSAHIGVIDKIFTRIGAGDNLSKGMSTFMVEMAETANILHNATDRSLVIL 702 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 DE+GRGT+T DGL+IA A +EYL T+ + + L ATH+ ELT L N V Sbjct: 703 DEVGRGTSTYDGLAIAQAVVEYLLFTDKKKAKTLFATHYKELTTLEDHCPHVENFHAGVK 762 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 D +FL++++ G + S+GI V +LAG P V+SRA IL+ E Sbjct: 763 DKAGQPVFLYEILKGHSQKSFGIHVARLAGFPLCVVSRAQQILRQLE 809 >gi|146281879|ref|YP_001172032.1| DNA mismatch repair protein MutS [Pseudomonas stutzeri A1501] gi|145570084|gb|ABP79190.1| DNA mismatch repair protein MutS [Pseudomonas stutzeri A1501] Length = 891 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 309/883 (34%), Positives = 486/883 (55%), Gaps = 36/883 (4%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L + TPMM+QY ++K +PD L+FYRMGDFYELF+DDA A+ L ITLT RG+ G Sbjct: 39 DLSAHTPMMQQYWKLKREHPDQLMFYRMGDFYELFYDDAKKAAALLDITLTARGQSAGTA 98 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM G+P H+A Y+ +L+K+G + ICEQI P +K V R VVR++TPGT++ Sbjct: 99 IPMAGIPFHSAEGYLARLVKLGESVVICEQIGDPAT-----SKGPVERQVVRIITPGTVS 153 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIF 199 ++ LL N L AV + ++ +DI++G F + + L++++ R+ P E++ Sbjct: 154 DEALLDERRDNLLAAVVGDEKLFGLSVLDIASGRFSVQELKGWETLLAELERLSPAELLI 213 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + ++ V + + FD + + ++ + FG + Sbjct: 214 PD------DWPQGLPLEKRRGVRRRAPWDFDRDSAFKSLCQQFSTQDLKGFGCENLTLAI 267 Query: 259 AAAAA-ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA ++Y K+TQ P + E + T+ +D A+R NLE+ L+G RE +L Sbjct: 268 GAAGCLLAYAKETQRTALPHLRSLRHERLDDTVILDGASRRNLELDVNLAGGRENTLQSV 327 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D T G RL + PL + + R DSI +++ +Q LK D+ R Sbjct: 328 MDRCQTAMGSRLLTRWLNRPLRNREILEARQDSITCLLEH-YRFEQLQPQLKDIGDLERI 386 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 L+R+ + P+D+A +RD + + + L +++ + L G + + P+ L L+ Sbjct: 387 LARIGLRNARPRDLARLRDAL-AALPQLQAGMQDLVAPHLLGLAKSIGTYPE-LADLLAR 444 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + D+ P RDGG L+ G DA LDE +SL + + + + L+ + T + NLK+ +N Sbjct: 445 AIIDNPPAVIRDGGVLKTGYDAELDELQSLSENAGQYLMDLETREKARTGLANLKVGYNR 504 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GYFIE+ S A D +I RQT+ RF T EL + E++ +A + AL Sbjct: 505 VHGYFIELPSKQAESAPAD------YIRRQTLKGAERFITPELKEFEDKALSAKSRALAR 558 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E ++ L +I L ++ +A +D+ LA A + RP ++ G Sbjct: 559 EKLLYDELLEMLIGHLAPLQESAAALAELDVLSNLAERALNLDLNRPRFVEQPCLRIEQG 618 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ L+ PF+AND L ++ ++ ++TGPNMGGKST++RQ ALIV++A Sbjct: 619 RHPVVEQVLE----TPFVANDLALD-----DATRMLVITGPNMGGKSTYMRQTALIVLLA 669 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ A+++S V++DE Sbjct: 670 QIGSFVPAAACELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNASDRSLVLMDE 729 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 +GRGT+T DGLS+AWA E L R L ATH+ ELT L +S N L ++ NE Sbjct: 730 VGRGTSTFDGLSLAWAAAEQLARL-RAFTLFATHYFELTVLPESEPVVANVHLSATEHNE 788 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL-YHHNQKDMRLYYPE 856 I+FLH V+PG A SYG+ V +LAG+P VI RA D L E H M P Sbjct: 789 RIVFLHHVLPGPASQSYGLAVAQLAGVPGEVIQRARDHLSRLETTSLPHEAPRMAPGQPA 848 Query: 857 IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + + + +E++ +N D+++P AL+ LY++K+ Sbjct: 849 PPMQ--SDLFASLPHPVLEELGRINPDDVTPRQALELLYSLKS 889 >gi|15836474|ref|NP_300998.1| DNA mismatch repair protein [Chlamydophila pneumoniae J138] gi|16752091|ref|NP_445457.1| DNA mismatch repair protein [Chlamydophila pneumoniae AR39] gi|33242306|ref|NP_877247.1| DNA mismatch repair protein [Chlamydophila pneumoniae TW-183] gi|12644492|sp|Q9Z6W5|MUTS_CHLPN RecName: Full=DNA mismatch repair protein mutS gi|7189834|gb|AAF38705.1| DNA mismatch repair protein MutS [Chlamydophila pneumoniae AR39] gi|8979315|dbj|BAA99149.1| DNA mismatch repair [Chlamydophila pneumoniae J138] gi|33236817|gb|AAP98904.1| MutS [Chlamydophila pneumoniae TW-183] Length = 828 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 313/827 (37%), Positives = 460/827 (55%), Gaps = 30/827 (3%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TPMM Q+ + K DS++ +RMGDFYE F+DDA+L S+ L +TLT+R + IP Sbjct: 4 KKPTPMMEQWHQCKEKAGDSVLLFRMGDFYEAFYDDAVLLSQHLELTLTQR-----QGIP 58 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M G+PV T + Y+ +LI G ++A+ EQ P + K+ + R++ R VTPGTL Sbjct: 59 MSGIPVSTVDTYVDRLIGKGFKVAVAEQFGEPAKEKESKKIGPMARDIQRFVTPGTLLSS 118 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII--- 198 LL +NY++A+ RI + + A +D+STG F I N L+ +I R+ P E++ Sbjct: 119 TLLQEKFNNYIVAINRIGSLFGFACLDLSTGSFFIEECENTKELVDEICRLAPSEVLSCN 178 Query: 199 -FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 F KE A L + L + F+H + ++ ++ + ++D FG V Sbjct: 179 KFYNKET--AIVMQLQQHLKLTLSTYADWAFEHKFASQKLTTHFQVASLDGFGLKGLVPA 236 Query: 258 -TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR-EQSLL 315 AA +SYI+ ++ I P+ Q L ID+A++ NLE+L L+ + + SLL Sbjct: 237 INAAGGLLSYIQDKLLLPTKHIAIPQTRGKQQKLLIDTASQVNLELLAPLNDPQGKNSLL 296 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 + +D++ T GGRL + + SP + +I R D++ FF++ L I+ L D+ Sbjct: 297 RIMDHTSTPMGGRLLRQILISPFYNPKEILVRQDAVEFFLRQVTLRKNIKTYLCQVRDIE 356 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R ++++ G P+DI +RD +G I LPE KL SL L Sbjct: 357 RLMTKVTTGLAGPRDIGTLRDSFSAGAQIYEQLASATLPEFFIDKCSLDTKLA-SLIALL 415 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 S L+ DLP DG D L R ++ S+ I Q + +ET IK LKI Sbjct: 416 SKSLNGDLPLRVSDGNIFVDEFHNDLKRLRHNQEHSQEWIWEYQERIRKETGIKKLKICF 475 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 LGY+IEV+S A L KD FI RQ+ + RFTT+EL ++ ++N + Sbjct: 476 AQALGYYIEVSSEFAPQLPKD------FIRRQSRLHAERFTTIELQQFQDDMSNISEKLQ 529 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E + F+ L + I++ + SQ +A +D I+LA LA Q YCRP +D S + Sbjct: 530 TLETQFFKDLCSHILQLRTEILALSQSLADLDYIISLADLAHAQGYCRPRVDMSDTLCIY 589 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 G HP V KTL + FI ND ++ + ++ LLTGPNM GKST++RQ AL+VI Sbjct: 590 RGCHP-VAKTLV--DTGKFIPNDTEMR----GSQTRMILLTGPNMAGKSTYIRQIALLVI 642 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQMGSY+PA AHIG++DK+F+R+G+ DNL+ G STFMVEM ETA+IL+ AT++S VIL Sbjct: 643 MAQMGSYIPAKSAHIGVIDKIFTRIGAGDNLSKGMSTFMVEMAETANILHNATDRSLVIL 702 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 DE+GRGT+T DGL+IA A +EYL T+ + + L ATH+ ELT L N V Sbjct: 703 DEVGRGTSTYDGLAIAQAVVEYLLFTDKKKAKTLFATHYKELTTLEDHCPHVENFHAGVK 762 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 D +FL++++ G + S+GI V +LAG P V+SRA IL+ E Sbjct: 763 DKAGQPVFLYEILKGHSQKSFGIHVARLAGFPLCVVSRAQQILRQLE 809 >gi|289424089|ref|ZP_06425875.1| DNA mismatch repair protein MutS [Peptostreptococcus anaerobius 653-L] gi|289155514|gb|EFD04193.1| DNA mismatch repair protein MutS [Peptostreptococcus anaerobius 653-L] Length = 891 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 309/902 (34%), Positives = 517/902 (57%), Gaps = 55/902 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM+ Y++ K D ++FYR+GDFYE+FFDDALLAS+ L ITLT + L + PMCG Sbjct: 9 SPMMKHYLDTKEEYKDCILFYRLGDFYEMFFDDALLASKVLDITLTGKACGLEERAPMCG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+ + Y+ +LI+ G+++AI EQ+E P AK LV+R VV++VTPGTL E+ L Sbjct: 69 VPYHSVSSYLTRLIQAGYKVAIGEQVEDPSTAK-----GLVKREVVKVVTPGTLLEEDSL 123 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 T +NYLMAV +I++ DISTG + + ++ +I ++ P+E+I + Sbjct: 124 ENTSNNYLMAVYFGNDAASISYTDISTGELNTTMIDPKKVKDEIAKVGPKELI-----TN 178 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIA-DYYNITTVDTFGSFS-QVEKTAAAAA 263 E+ +L +A N FD + + I D ++ + ++ F+ +++ + Sbjct: 179 RPEFLDSIRSLAAIANIYLNEDFDKDLLDKNILNDIFDRSYLEKNMIFNNHPMESSLSIV 238 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 ++YI+ TQM++ I + +D R NLE+ +T+ S +++ SLL+ ID + Sbjct: 239 LNYIRNTQMISSNNINRINVYKSNDYMVLDLFTRVNLELTKTIRSSNKKGSLLQVIDSTS 298 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G R+ + I PL + IN RLD + + L +++ L+ D+ R +++ Sbjct: 299 TPMGARMLRKFIEQPLMNVDLINRRLDITEAILSDFNLRENLRESLERIYDLERICAKVA 358 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKTLSSMLS 440 + PKD+ +++ I I+ +D P ++ + +++ L + + +++++ S Sbjct: 359 YDKVNPKDLINLKNSIAKLPEIVTTIANSDSPALDKFKSSIDCLYDIYRLIDESILEEPS 418 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 L +DG ++ L E R + + II ++ + E T K LKI +N G Sbjct: 419 QGL----KDGNIIKSQYSKDLYELRDIYNNGSSIIKDIEKREKERTGAKTLKIGYNKVFG 474 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IE+T A++++ DL+ D +I +QT+ N RF T EL ++E++I NA + +E Sbjct: 475 YYIEITK--AALVQLDLD--DSYIRKQTLVNAERFITPELKEVEDKIINAEDKIKSLEYS 530 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F+ + N I + + + + IA +D+ ++ AI+A + +Y RP + S + DGRHP Sbjct: 531 IFKDIRNTIYDNIDRIQVVANTIAELDVYVSNAIIANKNSYSRPYVSESGQLEIIDGRHP 590 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 ++E+ + Q++ FIAN + ND N K+ ++TGPNM GKST++RQ ALI +MA +G Sbjct: 591 VIEQIMGQEN---FIANKTSM---NDNN--KIHIITGPNMSGKSTYMRQTALICLMAHIG 642 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPAS A I I+D++F+RVG++D+L+ G+STFMVEM E + IL AT S +ILDE+GR Sbjct: 643 SFVPASSARIPILDRIFTRVGASDDLSQGQSTFMVEMDEVSQILKNATKYSLIILDEVGR 702 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GT+T DG+S+AW+ +EY+H+ + L ATH+HELTDL + N ++ V + + II Sbjct: 703 GTSTYDGISLAWSIVEYIHDRIGAKTLFATHYHELTDLENTYDNIKNYSVDVKEEGDDII 762 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK--------------LY--H 844 FL K++ AD SYGI V KLA LP+ +I RA ILK EK +Y Sbjct: 763 FLRKIVDRAADRSYGIYVAKLAKLPDDLIKRADSILKDLEKNHLNNSESISQATGIYPKE 822 Query: 845 HNQKDMR-LYYPEIQTKESKNNLSKNDKL-------FVEKIKCLNLDEMSPLTALKTLYA 896 N++++R L + + +ESK N+ ++++ + +IK +++ +PL + LY Sbjct: 823 ENEEEIRQLSFDFVLERESKKNIPMDEQIDLSPYKDIISEIKNIDMMNTTPLQLMNILYQ 882 Query: 897 VK 898 ++ Sbjct: 883 LQ 884 >gi|253682135|ref|ZP_04862932.1| DNA mismatch repair protein MutS [Clostridium botulinum D str. 1873] gi|253561847|gb|EES91299.1| DNA mismatch repair protein MutS [Clostridium botulinum D str. 1873] Length = 895 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 304/826 (36%), Positives = 489/826 (59%), Gaps = 41/826 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+E+K N D ++F+R+GDFYE+FF+DA A+R L + LT R L K PMCG Sbjct: 4 TPMMKQYLEVKEKNKDCILFFRLGDFYEMFFEDAETAARELELVLTGRDCGLEKRAPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H AN YI +LI G+++AICEQ+E P + K +V+R+V+++ TPGT ++ L Sbjct: 64 VPYHAANTYIGRLITKGYKVAICEQLEDPSQTK-----GIVKRDVIKIYTPGTYSDSSFL 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD--RLISDIMRIDPREIIFSEKE 203 T +NYLM++ A+++ D+STG F+ + S + ++ +I + P+EI+ + Sbjct: 119 EETKNNYLMSLYVEDNFVAMSFADVSTGDFQCTYSKYSISAILDEISKFTPKEIVIIDTI 178 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 Y S+ E + FF + + + + + D + + Sbjct: 179 DEKIIY-SIKERFDVALTEKSKPFFIENACLNLSKQFSDFSAED----YEDIVIKGCNGL 233 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSLLKTID 319 ++YI +TQ K T+ + + D T L ID +R NLE+ TL +++ SLL +D Sbjct: 234 LNYIIETQ---KTTLIHINKIDYYHTIDYLSIDINSRRNLELTETLRDKAKKGSLLWVLD 290 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T GGRL + + PL I R +++ I N L + I++ L+ D+ R Sbjct: 291 KTTTAMGGRLLRKWVEQPLIQKDIIEMRQNAVEEIINNVPLCDDIRENLRDVYDIERLAG 350 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKN---DLPEELRGAVEKLKKLPQSLEKTLS 436 ++ K++ +++ I + +I +L LKN +L + + ++ L + L++ + Sbjct: 351 KISSKNVNAKELLSLKNSIGNLPSIKSL-LKNFNSNLLKNIYDNIDCLDDIYSLLDEAIL 409 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + S + ++GG ++DG ++++DE R + K+ IASL+ + T IK+LK+K+N Sbjct: 410 ASPSLSI----KEGGIIKDGYNSTIDELRMAKSHGKQWIASLEEQERTLTGIKSLKVKYN 465 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+IE+T S+ D ++R+I +QT++N R+ T EL ++E +I A + Sbjct: 466 KVFGYYIEITKSNL-----DQVPENRYIRKQTLANCERYITPELKEVEEKILGAQEKLME 520 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E F + N I ++ + ++++I+ ID+ +LAI+A E NYC+P I + +K+ Sbjct: 521 LEYNLFIEIRNLIEKEIYRIKGSAKLISEIDVLTSLAIVALENNYCKPEIKTTGELYIKE 580 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VEK + + S F++ND L D +L L+TGPNM GKST++RQ ALI ++ Sbjct: 581 GRHPVVEKMIPRDS---FVSNDTVL----DNKDHQLLLITGPNMAGKSTYMRQVALINVL 633 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+GS+VPA A + I DK+F+R+G++D+LA G+STFMVEM E A+ILN AT++S ++LD Sbjct: 634 AQIGSFVPAKKASVVICDKIFTRIGASDDLAKGKSTFMVEMWEVANILNNATSKSLILLD 693 Query: 737 EIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 E+GRGT+T DGLSIAW+ IEY+ + N + + L ATH+HELT L ++ N ++ V Sbjct: 694 EVGRGTSTYDGLSIAWSVIEYICKNNNLKSKTLFATHYHELTSLEGKIQGVKNYSIAVKK 753 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 ++ IIFL K+I G AD SYGI+V KLAG+P VI RA +IL T E Sbjct: 754 VDDDIIFLRKIIEGGADESYGIEVAKLAGIPKDVIDRAKEILLTLE 799 >gi|331016401|gb|EGH96457.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 859 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 309/881 (35%), Positives = 486/881 (55%), Gaps = 34/881 (3%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L + TPMM+QY ++K+ + D L+FYRMGDFYE+F++DA A++ L ITLT RG+ G+ Sbjct: 7 DLSAHTPMMQQYWKLKNQHLDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQS 66 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCG+P H A Y+ KL+K+G + ICEQI P +K V R VVR++TPGT++ Sbjct: 67 IPMCGIPYHAAEGYLAKLVKLGESVVICEQIGDPATSK-----GPVDRQVVRIITPGTIS 121 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIF 199 ++ LL N + AV + +A +DI++G F + + L++++ RI+P E++ Sbjct: 122 DEALLDERRDNLIAAVLGDERLFGLAVLDITSGNFSVLEIKGWENLLAELERINPVELLI 181 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 + + L A + F+ + + ++ + FG + Sbjct: 182 PDDW-----PQGLPAEKRRGARRRAPWDFERDSAHKSLCQQFSTQDLKGFGCETLTLAIG 236 Query: 260 AAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA + Y K+TQ P + E + T+ +D+A+R NLE+ LSG R+ +L + Sbjct: 237 AAGCLLGYAKETQRTALPHLRSLRHERLDDTVILDAASRRNLELDTNLSGGRDNTLQSVM 296 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D T G RL + PL D + + R SI F++ N +Q LK D+ R L Sbjct: 297 DRCQTAMGTRLLTRWLNRPLRDLSILQARQTSITCFLERYRFEN-LQPQLKEIGDIERIL 355 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 +R+ + P+D+A +RD + + + D P L+ + P+ L L Sbjct: 356 ARIGLRNARPRDLARLRDALSALPELQQAMTDLDAPH-LQQLAQTASTYPE-LADLLQRA 413 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 ++D+ P RDGG L+ G DA LDE +SL + + + + L+ + T + +LK+ +N Sbjct: 414 INDNPPAVIRDGGVLKTGYDAELDELQSLSENAGQFLIDLEAREKARTGLSHLKVGYNRV 473 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GYFIE+ S A D +I RQT+ RF T EL + E++ +A + AL E Sbjct: 474 HGYFIELPSKQAEQAPAD------YIRRQTLKGAERFITPELKEFEDKALSAKSRALARE 527 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 +E L +I L + + +A +D+ LA A + P ++ GR Sbjct: 528 KMLYETLLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLDLNCPRFVAEPCMRIEQGR 587 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ L S PF+AND L +S ++ ++TGPNMGGKST++RQ ALIV++A Sbjct: 588 HPVVEQVL----STPFVANDLALD-----DSTRMLIITGPNMGGKSTYMRQTALIVLLAH 638 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V++DE+ Sbjct: 639 IGSFVPAASCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEV 698 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GR T+T DGLS+AWA E L + R L ATH+ ELT L +S +N L ++ NE Sbjct: 699 GRDTSTFDGLSLAWAAAECLAQL-RAYTLFATHYFELTVLPESEPLVNNVHLNATEHNER 757 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL-YHHNQKDMRLYYPEI 857 I+FLH+V+PG A SYG+ V +LAG+P VI+RA + L+ E H Q + P I Sbjct: 758 IVFLHRVLPGPASQSYGLAVAQLAGVPGKVITRAKEHLQRLETTSLPHEQPRAKPGKPAI 817 Query: 858 QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + + ++++ + +D+M+P AL LY ++ Sbjct: 818 --PQQSDMFASLPHPVLDELSKIKVDDMTPRQALDLLYTLQ 856 >gi|189083218|sp|A4VJN9|MUTS_PSEU5 RecName: Full=DNA mismatch repair protein mutS gi|327480122|gb|AEA83432.1| DNA mismatch repair protein MutS [Pseudomonas stutzeri DSM 4166] Length = 859 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 309/883 (34%), Positives = 486/883 (55%), Gaps = 36/883 (4%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L + TPMM+QY ++K +PD L+FYRMGDFYELF+DDA A+ L ITLT RG+ G Sbjct: 7 DLSAHTPMMQQYWKLKREHPDQLMFYRMGDFYELFYDDAKKAAALLDITLTARGQSAGTA 66 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM G+P H+A Y+ +L+K+G + ICEQI P +K V R VVR++TPGT++ Sbjct: 67 IPMAGIPFHSAEGYLARLVKLGESVVICEQIGDPAT-----SKGPVERQVVRIITPGTVS 121 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIF 199 ++ LL N L AV + ++ +DI++G F + + L++++ R+ P E++ Sbjct: 122 DEALLDERRDNLLAAVVGDEKLFGLSVLDIASGRFSVQELKGWETLLAELERLSPAELLI 181 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + ++ V + + FD + + ++ + FG + Sbjct: 182 PD------DWPQGLPLEKRRGVRRRAPWDFDRDSAFKSLCQQFSTQDLKGFGCENLTLAI 235 Query: 259 AAAAA-ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA ++Y K+TQ P + E + T+ +D A+R NLE+ L+G RE +L Sbjct: 236 GAAGCLLAYAKETQRTALPHLRSLRHERLDDTVILDGASRRNLELDVNLAGGRENTLQSV 295 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D T G RL + PL + + R DSI +++ +Q LK D+ R Sbjct: 296 MDRCQTAMGSRLLTRWLNRPLRNREILEARQDSITCLLEH-YRFEQLQPQLKDIGDLERI 354 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 L+R+ + P+D+A +RD + + + L +++ + L G + + P+ L L+ Sbjct: 355 LARIGLRNARPRDLARLRDAL-AALPQLQAGMQDLVAPHLLGLAKSIGTYPE-LADLLAR 412 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + D+ P RDGG L+ G DA LDE +SL + + + + L+ + T + NLK+ +N Sbjct: 413 AIIDNPPAVIRDGGVLKTGYDAELDELQSLSENAGQYLMDLETREKARTGLANLKVGYNR 472 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GYFIE+ S A D +I RQT+ RF T EL + E++ +A + AL Sbjct: 473 VHGYFIELPSKQAESAPAD------YIRRQTLKGAERFITPELKEFEDKALSAKSRALAR 526 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E ++ L +I L ++ +A +D+ LA A + RP ++ G Sbjct: 527 EKLLYDELLEMLIGHLAPLQESAAALAELDVLSNLAERALNLDLNRPRFVEQPCLRIEQG 586 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ L+ PF+AND L ++ ++ ++TGPNMGGKST++RQ ALIV++A Sbjct: 587 RHPVVEQVLE----TPFVANDLALD-----DATRMLVITGPNMGGKSTYMRQTALIVLLA 637 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ A+++S V++DE Sbjct: 638 QIGSFVPAAACELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNASDRSLVLMDE 697 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 +GRGT+T DGLS+AWA E L R L ATH+ ELT L +S N L ++ NE Sbjct: 698 VGRGTSTFDGLSLAWAAAEQLARL-RAFTLFATHYFELTVLPESEPVVANVHLSATEHNE 756 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL-YHHNQKDMRLYYPE 856 I+FLH V+PG A SYG+ V +LAG+P VI RA D L E H M P Sbjct: 757 RIVFLHHVLPGPASQSYGLAVAQLAGVPGEVIQRARDHLSRLETTSLPHEAPRMAPGQPA 816 Query: 857 IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + + + +E++ +N D+++P AL+ LY++K+ Sbjct: 817 PPMQ--SDLFASLPHPVLEELGRINPDDVTPRQALELLYSLKS 857 >gi|237724376|ref|ZP_04554857.1| DNA mismatch repair protein mutS [Bacteroides sp. D4] gi|265752670|ref|ZP_06088239.1| DNA mismatch repair protein MutS [Bacteroides sp. 3_1_33FAA] gi|229437245|gb|EEO47322.1| DNA mismatch repair protein mutS [Bacteroides dorei 5_1_36/D4] gi|263235856|gb|EEZ21351.1| DNA mismatch repair protein MutS [Bacteroides sp. 3_1_33FAA] Length = 870 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 312/884 (35%), Positives = 495/884 (55%), Gaps = 38/884 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+Q+ E+K+ +PD+++ +R GDFYE + +DA++AS LGITLTKR K + M G Sbjct: 8 TPMMKQFFELKAKHPDAIMLFRCGDFYETYSEDAIVASEILGITLTKRANGQAKSVEMAG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KL++ G R+AIC+Q+E P KK LV+R + LVTPG D +L Sbjct: 68 FPFHALDTYLPKLVRAGKRVAICDQLEDPKMTKK-----LVKRGITELVTPGVAINDNVL 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF--SEKE 203 S ++N+L AV + +A++DISTG F + D + + P+E++F ++ Sbjct: 123 SYKENNFLAAVHFGKASCGVAFLDISTGEFLTAEGPFDYIDKLLNNFAPKEVLFERGKRG 182 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + + S F T + F+ S S ++ ++ + FG A+ A Sbjct: 183 MFEGNFGSKFFTF-----ELDDWVFNESSSREKLLKHFETKNLKGFGVEHLKNGIVASGA 237 Query: 264 I-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 I Y+ TQ I R + + +D +LE++ +++ SLL ID +I Sbjct: 238 ILQYLNMTQHYQIGHITSLSRIEEDRYVRLDKFTVRSLELIGSMNEGG-TSLLDVIDRTI 296 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 + G RL + PL D +N RLD + +F + P I++ L D+ R +S+ Sbjct: 297 SPMGARLLKRWVVFPLKDEKPVNERLDVVEYFFREPDFKEFIEEKLHLIGDLERIVSKAA 356 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 +GR P+++ ++ +++ I N L D LR E+L L S+ + ++ + +D Sbjct: 357 VGRISPREVVQLKVALQAIEPIKNACLNAD-NGSLRRIGEQLN-LCLSIREKIAKEVKND 414 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P GG + DG +A LDE R + K + +Q + +E T I +LKI +NN GY+ Sbjct: 415 PPLLVNKGGVIADGVNAELDELRQIAFSGKDYLLKVQQRESELTGIPSLKIAYNNVFGYY 474 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IEV ++ + D +I +QT+ N R+ T EL + E +I A + L++E + + Sbjct: 475 IEVRNTHKDKVPAD------WIRKQTLVNAERYITQELKEYEEKILGAEDKILVLETKLY 528 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 L A+ E ++ + IA +D +A A +A+E NY RP++++S ++ GRHP++ Sbjct: 529 NELVIALAEFIPAIQINANQIARLDCLLAFANVARENNYIRPVVEDSEVIDIRQGRHPVI 588 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 EK L + +IAND L D + ++ ++TGPNM GKS LRQ ALI ++AQMGS+ Sbjct: 589 EKQLP--VGEKYIANDVFL----DSETQQIIIITGPNMAGKSALLRQTALITLLAQMGSF 642 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA A IG+VDK+F+RVG++DN++ G STFMVEM E A+ILN +++S V+ DE+GRGT Sbjct: 643 VPAESARIGMVDKIFTRVGASDNISVGESTFMVEMNEAANILNNLSSRSLVLFDELGRGT 702 Query: 743 ATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 +T DG+SIAWA +E++HE + R L ATH+HEL ++ KS KR N + V + + +I Sbjct: 703 STYDGISIAWAIVEHIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEIDNKVI 762 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 FL K+ G ++HS+GI V K+AG+P +++ RA DIL E + Q+ + EI + Sbjct: 763 FLRKLERGGSEHSFGIHVAKMAGMPKSIVKRANDILHQLET--DNRQQGIAKPTAEIASG 820 Query: 861 ESKNNLS--KNDKLFVEKIK--CLNLD--EMSPLTALKTLYAVK 898 S LS + D + +I+ LNLD ++PL AL L +K Sbjct: 821 RSGMQLSFFQLDDPVLGQIRDEILNLDVNNLTPLEALNKLNDIK 864 >gi|330872694|gb|EGH06843.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 859 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 308/881 (34%), Positives = 487/881 (55%), Gaps = 34/881 (3%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L + TPMM+QY ++K+ + D L+FYRMGDFYE+F++DA A++ L ITLT RG+ G+ Sbjct: 7 DLSAHTPMMQQYWKLKNQHLDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQS 66 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCG+P H A Y+ KL+K+G + ICEQI P +K V R VVR++TPGT++ Sbjct: 67 IPMCGIPYHAAEGYLAKLVKLGESVVICEQIGDPATSK-----GPVDRQVVRIITPGTIS 121 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIF 199 ++ LL N + AV + +A +DI++G F + + L++++ RI+P E++ Sbjct: 122 DEALLDERRDNLIAAVLGDERLFGLAVLDITSGNFSVLEIKGWENLLAELERINPVELLI 181 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 + + L A + F+ + + ++ + FG + Sbjct: 182 PDDW-----PQGLPAEKRRGARRRAPWDFERDSAHKSLCQQFSTQDLKGFGCETLTLAIG 236 Query: 260 AAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA + Y K+TQ P + E + T+ +D+A+R NLE+ LSG R+ +L + Sbjct: 237 AAGCLLGYAKETQRTALPHLRSLRHERLDDTVILDAASRRNLELDTNLSGGRDNTLQSVM 296 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D T G RL + PL D + + R SI F++ N +Q LK D+ R L Sbjct: 297 DRCQTAMGTRLLTRWLNRPLRDLSILQARQTSITCFLERYRFEN-LQPQLKEIGDIERIL 355 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 +R+ + P+D+A +RD + + + D P L+ + P+ L L Sbjct: 356 ARIGLRNARPRDLARLRDALSALPELQQAMNDLDAPH-LQQLAQTASTYPE-LADLLQRA 413 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 ++D+ P RDGG L+ G DA LD+ +SL + + + + L+ + T + +LK+ +N Sbjct: 414 INDNPPAVIRDGGVLKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLSHLKVGYNRV 473 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GYFIE+ S A D +I RQT+ RF T EL + E++ +A + AL E Sbjct: 474 HGYFIELPSKQAEQAPAD------YIRRQTLKGAERFITPELKEFEDKALSAKSRALARE 527 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 +E L +I L + + +A +D+ LA A + P ++ GR Sbjct: 528 KMLYETLLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLDLNCPRFVAEPCMRIEQGR 587 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ L S PF+AND L +S ++ ++TGPNMGGKST++RQ ALIV++A Sbjct: 588 HPVVEQVL----STPFVANDLALD-----DSTRMLIITGPNMGGKSTYMRQTALIVLLAH 638 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V++DE+ Sbjct: 639 IGSFVPAASCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEV 698 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGLS+AWA E L + R L ATH+ ELT L +S +N L ++ NE Sbjct: 699 GRGTSTFDGLSLAWAAAECLAQL-RAYTLFATHYFELTVLPESEPLVNNVHLNATEHNER 757 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL-YHHNQKDMRLYYPEI 857 I+FLH+V+PG A SYG+ V +LAG+P VI+RA + L+ E H Q + P I Sbjct: 758 IVFLHRVLPGPASQSYGLAVAQLAGVPGKVITRAKEHLQRLETTSLPHEQPRAKPGKPAI 817 Query: 858 QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + + ++++ + +D+++P AL LY ++ Sbjct: 818 --PQQSDMFASLPHPVLDELSKIKVDDLTPRQALDLLYTLQ 856 >gi|330507603|ref|YP_004384031.1| DNA mismatch repair protein MutS [Methanosaeta concilii GP-6] gi|328928411|gb|AEB68213.1| DNA mismatch repair protein MutS [Methanosaeta concilii GP-6] Length = 877 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 310/893 (34%), Positives = 495/893 (55%), Gaps = 59/893 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKH-LGKDIPMC 84 +P+M QY + K + PD+L+ +R+GDFYE F DDA++ +R L ITLT R K G+ IP+ Sbjct: 7 SPLMEQYYQNKKLYPDALLLFRVGDFYETFADDAVIVARDLNITLTSRQKDDQGEKIPLA 66 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H+ + Y+ +LI+ GH++AIC+Q+E P A+ LV+R + R+VTPGT+ E + Sbjct: 67 GVPYHSLDAYLARLIRAGHKVAICDQVEDPKLAR-----GLVKRAITRVVTPGTIIEPSM 121 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREII--FSEK 202 L + +N+L A+ + +A++D+STG F + H+RL S++ R P E + FS Sbjct: 122 LDESSNNFLAAIVKGDENVGLAFVDVSTGEFLTTEVPHNRLYSELARFRPAECLSAFS-- 179 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ-VEKTAAA 261 H E SL + +P F +E+ +AD Y + + + + A Sbjct: 180 --LHWEGTSL------QILEEP--CFSAERAEAALADRYGPDWKERLRLEGRGLSQRACG 229 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTLSG-SREQSLLKT 317 A +SY+ ++ +G+ + I S + +D NLEI R + SR +LL+ Sbjct: 230 AVLSYLNASRF---DLLGHLKDVQIYSGSDYMVLDEVTVRNLEITRNIRDRSRRGTLLEF 286 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D + T G R A + PL I RLD + +L + + LK + D+ R Sbjct: 287 LDQTRTAMGARTLARWLQMPLQSEQAIARRLDGVEELASKSLLHRSLAEELKGTSDLERL 346 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 LSR+ PK+++V++ + + L L +D ++ L L+ +S Sbjct: 347 LSRISCKSASPKELSVLKSTLEM-LPRLQEILMDDQSSAQSSYLQDLSSRLSPLDDIVSL 405 Query: 438 M---LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + + +D P RDGG +R+G D +D+ R L + I+ L+ E T IK+LKI Sbjct: 406 IERSIMEDPPVHVRDGGVIREGYDPEIDQLRELLRDGRGWISRLEGSEKERTGIKSLKIA 465 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 NN GY+IEV+ ++ ++ ++ +I +QT++N RF T EL D+E+R+ +A + Sbjct: 466 FNNVFGYYIEVSRANLHLVPQN------YIRKQTLANGERFVTPELKDMESRVLSAQERS 519 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E E F + + + ++ + + +A +D+ I+LA AKE N RP + + Sbjct: 520 VSLEQELFYKVRDLVASKAGVIQERATALAELDVLISLATSAKENNMIRPEFNQEGRISI 579 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 + RHP+++K ++ F+ ND L D + +L +LTGPNM GKSTF+RQ AL Sbjct: 580 RSSRHPVLDKAMR----GAFVPNDVLL----DTDRNRLIILTGPNMAGKSTFMRQIALTA 631 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMAQ GS+VPA+YA + +VD++F+RVG+ D+L++G+STFMVEM E A IL AT +S V+ Sbjct: 632 IMAQTGSFVPAAYASLSLVDQVFTRVGAYDDLSAGQSTFMVEMTEIAHILTSATRKSLVL 691 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDE+GRGT+T DGLS+AWA EYLHE+ +C+ + ATH+H+LTDL L N ++ V + Sbjct: 692 LDEVGRGTSTFDGLSLAWAISEYLHESIKCKSVFATHYHQLTDLESILSGVRNYSIAVKE 751 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK------------L 842 I FL V+PG D SYG+ V +LAG+P TV RA IL+ EK Sbjct: 752 DKGTITFLRTVVPGATDKSYGVHVARLAGVPRTVTKRADQILREIEKEALMQPGSGGRSQ 811 Query: 843 YHHNQKDMRLYYPEIQTKESKNNLSKNDK-LFVEKIKCLNLDEMSPLTALKTL 894 ++ +++ + + + ++ K +E+I+ L+LD M+P AL L Sbjct: 812 RRSSRYTQLIFFDGNEDGNTAGEVERDKKDPILEEIESLDLDMMTPREALDRL 864 >gi|226229317|ref|YP_002763423.1| DNA mismatch repair protein MutS [Gemmatimonas aurantiaca T-27] gi|226092508|dbj|BAH40953.1| DNA mismatch repair protein MutS [Gemmatimonas aurantiaca T-27] Length = 912 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 312/925 (33%), Positives = 498/925 (53%), Gaps = 76/925 (8%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S+TP+M+QY EIK+ + D+++F+RMGDFYE+F++DA ASR +G+TLT R ++P+ Sbjct: 4 SATPLMQQYREIKARHQDAILFFRMGDFYEMFYEDAETASRAIGLTLTARNNGGAAEVPL 63 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G+PV A Y+++L+ G+R+AICEQ+E P AK LV+R VV +TPG D Sbjct: 64 AGIPVKAAAEYLRRLVSQGYRVAICEQVEDPKLAK-----GLVKREVVETITPGAAFADD 118 Query: 144 LLSPTDSNYLMAVARIR----------TEWAIAWIDISTG---IFKISTSNHDRLISDIM 190 LL +NY+ A+A +R IA D+STG +F ++ + +++ Sbjct: 119 LLDGARANYVCALAMVRDVMRDAPRDAVPVGIAAADLSTGEVRLFGVTIGDAPAVLA--- 175 Query: 191 RIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTF 249 R+ PRE++ K +H E + V + FD ++ +A ++I +++ F Sbjct: 176 RLAPRELLLV-KNAAHPELAPVLRQAEQALVTSREGWEFDAQLAADDLARQFDIRSLEGF 234 Query: 250 G--SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS 307 G + AA A + Y+++ Q P + P E + +D R NLE++ +L Sbjct: 235 GLGTDDAAAVGAAGALLRYLRELQPGGLPHLARPTMERSGGVMPLDEMTRRNLELVESLR 294 Query: 308 GSREQ---SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPI 364 G + +LL +D + T G R+ + + +PL + I RLD++ +++P+ + Sbjct: 295 GDQRDNNGTLLSVLDRTTTPMGHRMLRQWLLAPLLEQPAIEQRLDAVTALVRDPVGRTAL 354 Query: 365 QKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRS---GINILNLFLKNDLPEELRGAV 421 + L DV R S+ GR P+++ + D + ++ L N G + Sbjct: 355 RDALDGVRDVERLASKAAAGRATPRELRALGDSLARLPLVAKAVHGVLSNGAGHTAGGVL 414 Query: 422 EKL----KKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIAS 477 + +S E+ L++ML P + + G D LDE R LRD K IA+ Sbjct: 415 SAMLADWDDGAESAER-LTTMLVARPPLTIGEEDTIAPGVDHDLDELRVLRDGGKDAIAT 473 Query: 478 LQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTT 537 +Q + T I +LK+ +N GYF+E+++++ ++ D + RQT++ R+ T Sbjct: 474 IQQQERARTGITSLKVGYNRVFGYFLEISNANRHLVPDD------YQRRQTLTGAERYVT 527 Query: 538 LELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAK 597 L + E ++ NA E E FE L + Q ++ +A ID+ + A +A+ Sbjct: 528 PALKEYEEKVLNAAERIESRERELFETLRRDVGVQITRWQQVARRVATIDVLASFADVAE 587 Query: 598 EQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTG 657 + Y RP++ + ++ GRHP+VE+ + ++ FI ND + +L +LTG Sbjct: 588 REQYVRPVLHDGFALDIRAGRHPVVERMMAREK---FIPNDLQFT-----EDAQLIVLTG 639 Query: 658 PNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEM 717 PNM GKST LRQ LI +MAQ+G YVPA AH+ IVD+LF+RVG++DNL G+STFMVEM Sbjct: 640 PNMAGKSTILRQIGLIQLMAQVGMYVPAHEAHLPIVDRLFTRVGASDNLVRGQSTFMVEM 699 Query: 718 IETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTD 777 ET++IL+ AT +S V+LDEIGRGT+T DG+SIAW+ E+LH+ C+ + ATH+HELT Sbjct: 700 SETSAILHTATKRSLVLLDEIGRGTSTYDGVSIAWSVSEHLHDGIGCKTVFATHYHELTQ 759 Query: 778 LSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILK 837 L+ L N T+ V + + ++FLH++IPG AD SYGI+VG+LAGLP VI+RA ++L Sbjct: 760 LANELSGVRNFTVAVREVGDQVLFLHRLIPGGADRSYGIEVGRLAGLPAPVIARAKEVLA 819 Query: 838 TFEKLYHHNQKDMRLYYPEIQTKES--------KNNL-SKNDKL---------------F 873 E Q RL +Q S K+ L + D+L Sbjct: 820 LLEG--EGEQMAARLTAEGMQAPSSTKRRGPRLKHQLQASTDQLGFFGEAAVVDPALTRL 877 Query: 874 VEKIKCLNLDEMSPLTALKTLYAVK 898 + + L ++M+P+ AL TL ++K Sbjct: 878 ADAVDALEPEQMTPMQALNTLASLK 902 >gi|330967907|gb|EGH68167.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. actinidiae str. M302091] Length = 859 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 308/881 (34%), Positives = 487/881 (55%), Gaps = 34/881 (3%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L + TPMM+QY ++K+ + D L+FYRMGDFYE+F++DA A++ L ITLT RG+ G+ Sbjct: 7 DLSAHTPMMQQYWKLKNQHLDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQS 66 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCG+P H A Y+ KL+K+G + ICEQI P +K V R VVR++TPGT++ Sbjct: 67 IPMCGIPYHAAEGYLAKLVKLGESVVICEQIGDPATSK-----GPVDRQVVRIITPGTIS 121 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIF 199 ++ LL N + AV + +A +DI++G F + + L++++ RI+P E++ Sbjct: 122 DEALLDERRDNLIAAVLGDERLFGLAVLDITSGNFSVLEIKGWENLLAELERINPVELLI 181 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 + + L A + F+ + + ++ + FG + Sbjct: 182 PDDW-----PQGLPAEKRRGARRRAPWDFERDSAHKSLCQQFSTQDLKGFGCETLTLAIG 236 Query: 260 AAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA + Y K+TQ P + E + T+ +D+A+R NLE+ LSG R+ +L + Sbjct: 237 AAGCLLGYAKETQRTALPHLRSLRHERLDDTVILDAASRRNLELDTNLSGGRDNTLQSVM 296 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D T G RL + PL D + + R SI F++ N +Q LK D+ R L Sbjct: 297 DRCQTAMGTRLLTRWLNRPLRDLSILQARQTSITCFLERYRFEN-LQPQLKEIGDIERIL 355 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 +R+ + P+D+A +RD + + + D P L+ + P+ L L Sbjct: 356 ARIGLRNARPRDLARLRDALSALPELQQAMNDLDAPH-LQQLAQTASTYPE-LADLLQRA 413 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 ++D+ P RDGG L+ G DA LD+ +SL + + + + L+ + T + +LK+ +N Sbjct: 414 INDNPPAVIRDGGVLKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLSHLKVGYNRV 473 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GYFIE+ S A D +I RQT+ RF T EL + E++ +A + AL E Sbjct: 474 HGYFIELPSKQAEQAPAD------YIRRQTLKGAERFITPELKEFEDKALSAKSRALARE 527 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 +E L +I L + + +A +D+ LA A + P ++ GR Sbjct: 528 KMLYETLLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLDLNCPHFVAEPCMRIEQGR 587 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ L S PF+AND L +S ++ ++TGPNMGGKST++RQ ALIV++A Sbjct: 588 HPVVEQVL----STPFVANDLALD-----DSTRMLIITGPNMGGKSTYMRQTALIVLLAH 638 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V++DE+ Sbjct: 639 IGSFVPAASCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEV 698 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGLS+AWA E L + R L ATH+ ELT L +S +N L ++ NE Sbjct: 699 GRGTSTFDGLSLAWAAAECLAQL-RAYTLFATHYFELTVLPESEPLVNNVHLNATEHNER 757 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL-YHHNQKDMRLYYPEI 857 I+FLH+V+PG A SYG+ V +LAG+P VI+RA + L+ E H Q + P I Sbjct: 758 IVFLHRVLPGPASQSYGLAVAQLAGVPGKVITRAKEHLQRLETTSLPHEQPRAKPGKPAI 817 Query: 858 QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + + ++++ + +D+++P AL LY ++ Sbjct: 818 --PQQSDMFASLPHPVLDELSKIKVDDLTPRQALDLLYTLQ 856 >gi|331269502|ref|YP_004395994.1| DNA mismatch repair protein MutS [Clostridium botulinum BKT015925] gi|329126052|gb|AEB75997.1| DNA mismatch repair protein MutS [Clostridium botulinum BKT015925] Length = 895 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 304/828 (36%), Positives = 486/828 (58%), Gaps = 45/828 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+E+K N D ++F+R+GDFYE+FF+DA A+R L + LT R L K PMCG Sbjct: 4 TPMMKQYLEVKEKNKDCILFFRLGDFYEMFFEDAETAARELELVLTGRDCGLEKRAPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H AN YI +LI G+++AICEQ+E P +AK +V+R+V+++ TPGT ++ L Sbjct: 64 VPYHAANTYISRLIIKGYKVAICEQLEEPSQAK-----GIVKRDVIKIYTPGTYSDSSFL 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD--RLISDIMRIDPREII----F 199 T +NYLM++ A+++ D+STG F+ + S + ++ +I + P+EI+ Sbjct: 119 EETKNNYLMSLYVEGNLVAMSFADVSTGDFQCTYSTYSISAILDEISKFIPKEIVVLDTI 178 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 EK +S S+ E + FF + + + + T D + + Sbjct: 179 DEKVIS-----SIRERFDVALTEKSETFFIENACLNLSKQFADFNTED----YEDIVIKG 229 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSLL 315 ++YI +TQ K T+ + + D T L ID +R NLE+ TL +++ SLL Sbjct: 230 CNGLLNYIIETQ---KTTLIHINKIDYYHTVDYLSIDINSRRNLELTETLRDKAKKGSLL 286 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T GGRL + + PL I R +++ + N L + +++ L+ D+ Sbjct: 287 WVLDKTTTAMGGRLLRKWVEQPLIQKYIIEMRQNAVEEIMNNVPLCDDVRENLRDVYDIE 346 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R ++ K++ +++ I + + LKN + L+ +KL L Sbjct: 347 RLAGKISSKNVNAKELLSLKNSI-GNLPAIKSLLKNFNSDLLKNIYDKLDCLEDIYSLLD 405 Query: 436 SSMLSDDLPTFK-RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 +++L+ P+ ++GG ++DG ++ +DE R + K+ IASL+ + T IK+LK+K Sbjct: 406 NAILAS--PSLSIKEGGIIKDGYNSIIDELRMAKSHGKQWIASLEEQERTLTGIKSLKVK 463 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+IE+T S+ D ++R+I +QT++N R+ T EL ++E +I A Sbjct: 464 YNKVFGYYIEITKSNL-----DQVPENRYIRKQTLANCERYITPELKEVEEKILGAQEKL 518 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E F + + I ++ + ++++I+ ID+ +LA++A E NYC+P I + Sbjct: 519 MELEYNLFIEIRDRIEKEIYRIKGSAKLISEIDVLGSLAVVALENNYCKPEIKTIGELYI 578 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 K+GRHP+VEK + + S F++ND L D +L L+TGPNM GKST++RQ ALI Sbjct: 579 KEGRHPVVEKMIPRDS---FVSNDTVL----DNKDQQLLLITGPNMAGKSTYMRQVALIN 631 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++AQ+GS+VPA A + I DK+F+R+G++D+LA G+STFMVEM E A+ILN AT++S ++ Sbjct: 632 VLAQIGSFVPAKKASVVICDKIFTRIGASDDLAKGKSTFMVEMWEVANILNNATSKSLIL 691 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRG--LLATHFHELTDLSKSLKRFHNATLQV 792 LDE+GRGT+T DGLSIAW+ IEY+ + N+ + L ATH+HELT L ++ N ++ V Sbjct: 692 LDEVGRGTSTYDGLSIAWSVIEYICKNNKLKSKTLFATHYHELTSLEGKIEGVKNYSIAV 751 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 ++ IIFL K+I G AD SYGI+V KLAG+P VI RA +IL T E Sbjct: 752 KKVDDDIIFLRKIIKGGADESYGIEVAKLAGIPKDVIDRAKEILVTLE 799 >gi|319943934|ref|ZP_08018214.1| DNA mismatch repair protein MutS [Lautropia mirabilis ATCC 51599] gi|319742695|gb|EFV95102.1| DNA mismatch repair protein MutS [Lautropia mirabilis ATCC 51599] Length = 914 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 322/925 (34%), Positives = 496/925 (53%), Gaps = 76/925 (8%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L + TPMMRQY+ IK+ +PD+L+FYRMGDFYE+F++DA A++ L ITLTKRG G+ Sbjct: 5 DLSAHTPMMRQYLSIKAEHPDALLFYRMGDFYEMFYEDARKAAQLLSITLTKRGTSAGEP 64 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM GVPV Y+ +L+ +G +AICEQI P +K V R V+R +TPGTLT Sbjct: 65 IPMAGVPVQALEQYLARLVALGQSVAICEQIGDPA-----ASKGPVERKVIRTITPGTLT 119 Query: 141 EDQLLSPTDSNYLMAV---------ARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMR 191 + QLL + L A+ AR +A + ++G ++T L ++I R Sbjct: 120 DAQLLPEREDRPLAALVFSDAGRRGARTTPLVTLATVVAASGRCTLTTLPEAELEAEIER 179 Query: 192 IDPREIIFSEKELSHAEYKS-LFETLGNVA--------VAQPNVFFDHSISESRIADYYN 242 I P E++ SE + A KS L E L A +A+P+ FD + + I + Sbjct: 180 IGPGELLVSE---AAARNKSVLLERLRLHARTTPVMPILARPDWQFDVARAGRTICEALG 236 Query: 243 ITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKP--TIGYPEREDIQSTLFIDSAARSNL 300 I T+ + E AA + Q + +P + ER ++ + ID AR NL Sbjct: 237 IQTLHAT-ELQEDEAGQAAIGALLVYLGQNIGQPFRHLQPIERVRREAHIIIDQVARRNL 295 Query: 301 EILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL 360 E++R L + +LL +D T AG RL + + +PL D T ++ R + ++ + Sbjct: 296 ELVRPLQEEQGPTLLSRMDVCATAAGSRLLRQWLLAPLQDRTAVHARQALVALLLEKD-M 354 Query: 361 INPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRS-GINILNLFLKNDLP--EEL 417 PI ++L + D+ R SR+ +G P+++ +RD + G + L + D+P E Sbjct: 355 AQPIGRLLSQAADIERIASRIMLGSARPRELVALRDSLPVLGACVSQLQAQLDVPGAETE 414 Query: 418 RGAVEKLKKLPQSLE------KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQS 471 A+ L++L Q+ + + LS+ L D+ T RDGG +R G DA LDE R + Sbjct: 415 PAALTALQQLAQAADIDPAIGERLSATLLDEPATMIRDGGVIRPGFDAQLDELRDIDAGC 474 Query: 472 KRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSN 531 +A ++ + E T I LK+ +N+ G++IEV S A + + + RQT+ Sbjct: 475 DGFLAEMEARERERTGIATLKVGYNSVHGFYIEVGRSHADRIPTE------YRRRQTLKA 528 Query: 532 LTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIA 591 R+ T EL E++ +A AL E +E L + + +L + +A +D+ A Sbjct: 529 AERYITPELKAFEDKALSARERALARERALYEQLLTELAPHTPALQRLAAGLAHLDVCQA 588 Query: 592 LAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGK 651 A +A + + RP + +VK GRHP+VE ++Q FIANDC+L+ P + Sbjct: 589 FAQVAGQSGWSRPGLLAVPGLLVKGGRHPVVEGMVEQ-----FIANDCELT-PQRR---- 638 Query: 652 LWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRS 711 L ++TGPNMGGKST++RQ ALI I+A GS+VPA+ +G +D++F+R+G++D+LA GRS Sbjct: 639 LLIITGPNMGGKSTYMRQAALIAILAWCGSFVPATACEVGPIDRIFTRIGASDDLAGGRS 698 Query: 712 TFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATH 771 TFMVEM E A I+N AT +S V++DEIGRGT+T DGLS+A A +L RC L ATH Sbjct: 699 TFMVEMTEAAVIVNAATERSLVLVDEIGRGTSTFDGLSLAHAIARHLLVQRRCLTLFATH 758 Query: 772 FHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISR 831 + ELT L+ N L ++ N I+FLH+V PG A S+G+QV KLAGLP ++ Sbjct: 759 YFELTSLAAHEDAAVNLHLSATEHNGRIVFLHQVQPGPASKSHGLQVAKLAGLPAGLLRH 818 Query: 832 AYDILKTFEKLYHHNQKDMRLY-------------YPEIQTKESKNNLSKNDKL------ 872 A +L+ E+ + L+ P T+E +N L Sbjct: 819 AQTLLQALEENAADQGPQLDLFATETLQDSTVASDVPASDTQECENGGEPFSSLRADAAA 878 Query: 873 --FVEKIKCLNLDEMSPLTALKTLY 895 +++++ L+LD ++P A + L+ Sbjct: 879 QQVLDELRALDLDAITPRQAAEQLH 903 >gi|160892634|ref|ZP_02073424.1| hypothetical protein CLOL250_00164 [Clostridium sp. L2-50] gi|156865675|gb|EDO59106.1| hypothetical protein CLOL250_00164 [Clostridium sp. L2-50] Length = 865 Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust. Identities = 320/880 (36%), Positives = 496/880 (56%), Gaps = 36/880 (4%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY+E+K+ D ++FYR+GDFYE+FFDDAL AS+ L ITLT R + PMCGVP Sbjct: 1 MMQQYMEVKNQYKDCILFYRLGDFYEMFFDDALTASKVLEITLTGRDCGQPERAPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H + Y+ KLI+ G ++AICEQ+E P AK +V+R V+R+VTPGT + +L Sbjct: 61 YHACDVYLNKLIENGFKVAICEQVEDPKLAK-----GIVKREVIRVVTPGTNMSNAILDE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKELS- 205 T +NYLM++ + I+ +DI+TG FK + + +L +I + P EII + ++ Sbjct: 116 TRNNYLMSIFENDGAFGISLVDITTGEFKTARVPSLSKLTDEINKYSPAEIIGNHSFMNC 175 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG--SFSQVEKTAAAAA 263 ++ L E + P +F+ + E I + + +D G F ++ Sbjct: 176 DLDFVYLREKMKISISEAPEHYFNQMLCEDAIMRQFGVNNMDGLGLKDFPDC-ILSSGVL 234 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSI 322 + Y+ +TQ I + I + +DSA R NLE+ TL +++ SLL +D + Sbjct: 235 LQYLHETQKNFLAHINHIVLYSIDDFMILDSATRRNLELCETLRDKQKRGSLLWVLDKTK 294 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G R+ I PL I RLD+I + I + +++ L D+ R ++R+ Sbjct: 295 TAMGARMLRSMIEQPLIYKKDIEARLDAIEQLNNDMINRDEMREYLNPIYDLERLMTRIS 354 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAV-EKLKKLPQSLEKTLSSMLSD 441 + P+D+ + + I L P+ L + EK+ +L Q + L ++D Sbjct: 355 LRSANPRDMIAFKTSLSYLPYIRQLL--QIYPDGLLADIYEKMDEL-QDIYDLLERSIND 411 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 D P R+GG +DG +D +S + K +A L+ + ++T IKNL+IK N GY Sbjct: 412 DPPILIREGGIFKDGYLEEIDTLKSAKTDGKTWLAELEEREKQKTGIKNLRIKFNKVFGY 471 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 + EVT+S KDL + FI +QT++N R+TT EL +L I + + +E E+ Sbjct: 472 YFEVTNSY-----KDL-VPEYFIRKQTLANSERYTTEELDNLAGSILGSEDKLYALEYET 525 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 + L + I + + N ++ IA++D +L+ +A + RP I+ +K+GRHP+ Sbjct: 526 YIALRDKIAGEILRVQNTARQIALLDCLCSLSYVASANQFVRPEINEDGVIDIKEGRHPV 585 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VEK + ++ FI+ND L + ++ ++TGPNM GKST++RQ ALIV+MAQ+GS Sbjct: 586 VEKMM---NNGMFISNDTYL----NNFESRISIITGPNMAGKSTYMRQTALIVLMAQIGS 638 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA+ A+IGI D++F+RVG++D+LASG+STFMVEM E A+IL AT S +ILDEIGRG Sbjct: 639 FVPAASANIGICDRIFTRVGASDDLASGQSTFMVEMSEVANILRNATKNSLLILDEIGRG 698 Query: 742 TATLDGLSIAWATIEYL--HETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 T+T DGLSIAWA +EY+ E + L ATH+HELT+L L +N + V + + I Sbjct: 699 TSTYDGLSIAWAVVEYISNSELLGAKTLFATHYHELTELEGKLSSVNNYCIAVKEDGDDI 758 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL-KTFEKLYHHNQKDMRLYYPEIQ 858 +FL K++ G AD SYGIQV KLAG+P+ VI RA +I + + KD+++ + Sbjct: 759 VFLRKIVKGGADRSYGIQVAKLAGVPDIVIDRANEICNQLIDTDITTKLKDIKI-TNDFH 817 Query: 859 TKESKNNLS----KNDKLFVEKIKCLNLDEMSPLTALKTL 894 S +S + +E+IK +L M+P+ AL L Sbjct: 818 KSASDTQMSFLANPEESAILEEIKNADLSNMTPMKALLYL 857 >gi|57234006|ref|YP_181932.1| DNA mismatch repair protein [Dehalococcoides ethenogenes 195] gi|115299206|sp|Q3Z767|MUTS_DEHE1 RecName: Full=DNA mismatch repair protein mutS gi|57224454|gb|AAW39511.1| DNA mismatch repair protein MutS [Dehalococcoides ethenogenes 195] Length = 858 Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust. Identities = 309/881 (35%), Positives = 505/881 (57%), Gaps = 35/881 (3%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 +++ TP+ +QY++IK P+++VF+R+GDFYE F +DA +A+R L I LT R G + Sbjct: 1 MENITPLRKQYLDIKKNYPEAIVFFRLGDFYETFEEDARIAARELEIVLTSREMGKGLKV 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 P+ G+P H ++Y+ +LI G+++AICEQ+ P E K LV+R V RLVTPGT+ E Sbjct: 61 PLAGIPYHALDNYLSRLINRGYKVAICEQVTKPGE-----TKGLVKRQVTRLVTPGTVVE 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 LL +N+L+++ +A+ DIST F + + + L ++I R++P EII Sbjct: 116 PNLLDSKQNNFLLSLYLTEDSCGLAFADISTSEFGCTQLDINGLEAEINRLNPAEII--- 172 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAA 260 L ++ +L L +F+ ++ R+ ++ + +G + + +AA Sbjct: 173 --LPKSQSLNLPLHLKATISKLDGYYFEADVARERLLKHFECQNLSAYGCENLPLAVSAA 230 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTID 319 A ++Y+++TQ + + I + IDS SNLEI R+ G S + SLL +D Sbjct: 231 GALLNYLEETQKSSLKQLERLAAYTISDYMQIDSHTLSNLEIFRSSGGNSLKGSLLGVLD 290 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T GGRL + + PL I RL ++++F + + + K L D+ R + Sbjct: 291 QTKTAMGGRLLRKFLGQPLLRQEDIEKRLSAVDYFFEESLARASLAKALGQIADMERIAN 350 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R++ PK++ +++ + + I F P L + LK LP+ L+ ++ + Sbjct: 351 RIRQKTILPKELISLKNSLETVSAIHRQFGLMP-PPRLAYFLNGLKPLPEMLD-IVNEAI 408 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 +DD P+ +G +R G + +D+ SL ++ ++ ++ + E+T IK+LK+ +N Sbjct: 409 NDDPPSTLGEGKVIRSGFNPEMDKLCSLAGDARTFLSQMEAREREQTGIKSLKLGYNRVF 468 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IEV++++ + + ++ +I +QT+ N RF T EL + EN I NA L +E Sbjct: 469 GYYIEVSNANLADIPQN------YIRKQTLVNAERFITPELKEYENLILNAKERLLEMET 522 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 +E + N + +L + + +A +D+ A A +A Y RP+ + + ++ GRH Sbjct: 523 GLYEQVLNQLGGFYSALLSNAAALASLDVLSAFAEVAVRNGYVRPLFHSENSLVIHRGRH 582 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE+ L S F AND LS + ++ +LTGPNM GKST+L+Q ALIV+MAQ+ Sbjct: 583 PMVEQGLGYGS---FAANDISLSAED----CQIIILTGPNMAGKSTYLKQTALIVLMAQI 635 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPA A + + D++FSR+G+ ++L++G+STFMVEM+ETASILN AT++S +ILDEIG Sbjct: 636 GSYVPAETAELCLTDRIFSRIGAREDLSAGQSTFMVEMVETASILNTATSRSLLILDEIG 695 Query: 740 RGTATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 RGT+T DGL+IA A +EY+H + + L ATH+HEL +L+ L R N + VS+ Sbjct: 696 RGTSTYDGLAIAQAVVEYIHSQPSLHAKTLFATHYHELVELANYLPRVKNYNIAVSEDRG 755 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 ++FLH+++PG D SYGI V KLAGLP VI RAY++L E K +R P++ Sbjct: 756 EVVFLHRIVPGGVDKSYGIHVAKLAGLPGWVIKRAYEVLTELENPAKKEPK-IRNCQPQL 814 Query: 858 QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 L++ E+IK L ++ ++PL AL LY +K Sbjct: 815 LLP-----LTEQTSALAEEIKGLEIESLTPLAALNKLYELK 850 >gi|220904451|ref|YP_002479763.1| DNA mismatch repair protein MutS [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|254766625|sp|B8J008|MUTS_DESDA RecName: Full=DNA mismatch repair protein mutS gi|219868750|gb|ACL49085.1| DNA mismatch repair protein MutS [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 927 Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust. Identities = 322/930 (34%), Positives = 500/930 (53%), Gaps = 64/930 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM Y+ IK+ PD+L+FYRMGDFYELFFDDA LA+R L ITLT R + IPMCG Sbjct: 9 TPMFEHYMSIKADYPDALLFYRMGDFYELFFDDAELAARELQITLTSRSRDPNNPIPMCG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H + Y+ +L+ G+ IAIC+Q+E P + +K LV+R V + TPGT+ +D L Sbjct: 69 VPWHAVDTYVAQLVDKGYHIAICDQVEDP-----KTSKGLVKRAVTSVKTPGTVLDDANL 123 Query: 146 SPTDSNYLMAV--ARIRTEWAIAWIDISTGIFK-ISTSNHDRLISDIMRIDPREIIFSEK 202 S NYL A+ + AW+D+STG + + L ++++ PRE++ E Sbjct: 124 STKSHNYLGALCPGSDAEKGGFAWLDVSTGQWSGVDFRRQTELWQWVLKMAPRELLVPEG 183 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE-KTAAA 261 A ++L E G V P FD S R+ + G + E A Sbjct: 184 FQPPA--RTLLE--GIRLVRLPLSRFDLKRSTERVLAAQGVREAAALGLEGREEIMRACG 239 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK-TIDY 320 A ++Y+ +TQM + + R D+ L ID NLEI L+G + + L+ +D Sbjct: 240 ALLAYLAQTQMRSPEHLQPFLRLDLSRRLIIDEVTERNLEIFTRLNGRKGKGTLRHVLDE 299 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 ++T GGRL + + P + + I D++ +F + +++ L D+ R +R Sbjct: 300 TMTPMGGRLLEDMLRHPWREISPIVRIQDAVEWFYVDDGRRTALREALNGVYDMERLSTR 359 Query: 381 LKIGRGEPKDIAVIRDGIRSGINIL--------NLFLKNDLPEEL-------------RG 419 + + +G P+D +R+ + + + +L L+ D ++ R Sbjct: 360 ISLNQGSPRDFIALRNSLAALPQVFTALIEPTTSLLLRPDQEKDASENTSQENGLTQPRA 419 Query: 420 AVEKLKKLP--QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIAS 477 E LK + + L S L D+ P DGG + G +A LD L + ++ + + Sbjct: 420 LTELLKTWDAMEDCAQLLQSALVDNPPPVITDGGLFKSGYNAELDRLLDLAEHGEQKLQA 479 Query: 478 LQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTT 537 + + T I LK+ +N GY+ EV+ ++ S FI RQ+++N RFTT Sbjct: 480 MLAEEQSTTGIAKLKLGYNRVFGYYFEVSRAAHSG-----TVPYHFIRRQSLANAERFTT 534 Query: 538 LELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAK 597 L +LE + +A++ +E F+ L + +Q E + + +Q+IA +D +LA + + Sbjct: 535 EALKNLEEELLSASDKRKALEYTLFQDLRQHMADQRERIAHMAQLIAHLDYWQSLAQVGR 594 Query: 598 EQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTG 657 N+CRP ++ N +++GRHP+VE + + + F+ ND L ++K +L LLTG Sbjct: 595 LNNWCRPGLETDGNLTIREGRHPVVEAMIGRAN---FVPNDFRL---DEKR--RLCLLTG 646 Query: 658 PNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEM 717 PNM GKST LRQ A+I ++AQMGS VPA+ A +G+VD+LFSRVG++DNLA G+STFMVEM Sbjct: 647 PNMAGKSTVLRQVAIICLLAQMGSMVPATSARLGLVDRLFSRVGASDNLAQGQSTFMVEM 706 Query: 718 IETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYL--HETNRCRGLLATHFHEL 775 +ETA IL QAT +S +ILDEIGRGT+T DG+++AWA +E L R L ATH+HEL Sbjct: 707 METARILRQATKRSLIILDEIGRGTSTYDGVALAWAMVEDLSRRAQGELRTLFATHYHEL 766 Query: 776 TDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI 835 T L + + +S+ + I+FLHK++PG AD SYG++V +LAG+P V+ RA I Sbjct: 767 TALEGRVDGVFTMNIAISEYSGDILFLHKLVPGPADRSYGVEVARLAGVPGPVVQRARAI 826 Query: 836 LKTFEKLYHHNQKDM-------RLYYPEIQTKESKNNLS----KNDKLFVEKIKCLNLDE 884 L E+ +K + + PE +E L +++ +E ++ + +E Sbjct: 827 LANLERGRDVARKAVVSAVCLPGIDLPETGPEEDMPVLQAAPPRSEHPVIELLRQIEPEE 886 Query: 885 MSPLTALKTLYAVKA-WTLEKYSTDEDSEP 913 +SPL ALKTL K W+ + S ++ P Sbjct: 887 LSPLDALKTLMEWKKLWSAQPGSAEQGESP 916 >gi|15217089|gb|AAK92499.1|AF400583_1 mismatch repair protein [Acinetobacter sp. 93A2] Length = 860 Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust. Identities = 333/890 (37%), Positives = 498/890 (55%), Gaps = 60/890 (6%) Query: 34 EIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANH 93 ++K + +L+FYRMGDFYELFFDDA A++ LGITLT RGK G+ IPM GVP H A Sbjct: 1 KVKLEHQHALLFYRMGDFYELFFDDARKAAKLLGITLTHRGKANGEPIPMAGVPYHAAEG 60 Query: 94 YIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYL 153 Y+ +L++ G +AICEQ+ A RG K+ + R VVR++TPGT+T+D LL S+ L Sbjct: 61 YLARLVRAGQTVAICEQVGEGENAGSRG-KAPMERKVVRIITPGTITDDALLGSYQSSNL 119 Query: 154 MAVARIRTEWAIAWIDISTGIFKISTSNH--DRLISDIMRIDPREIIFSEKELSHAEYKS 211 +A+ + + IA +D+S IFK+ ++L ++ R+ P EI+ E + + Sbjct: 120 VALCIQQNKIGIALLDLSASIFKVQQHEFKTEQLYIELARLMPSEIVVDEDLVDQNILEQ 179 Query: 212 LFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAISYIKKT 270 + + + +PNV F+ + ++ + D + +TT+ FG + K AAAA I Y K+T Sbjct: 180 IKKQIECSITKRPNVDFNLNNAQKTLCDQFGVTTLSGFGIDHLPLAKAAAAALIHYAKET 239 Query: 271 QMVNKPTIGYPEREDIQSTLFI--DSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGR 328 Q P I + E QST FI D R NLEI+ L SL I+ T GGR Sbjct: 240 QKTALPHIRSIQLE--QSTDFIALDPITRRNLEIIDPLF-EHGTSLFNLINDCQTAMGGR 296 Query: 329 LFAERIASPLTDSTKINTRLDSINFFIQNPILI----NPIQKILKSSPDVPRSLSRLKIG 384 L + + P+ D+ ++ RLD+ +LI +P++ +LK D+ R LSR+ +G Sbjct: 297 LLSRILMQPIRDTAILDARLDATE-----QLLIGYHESPVRLVLKEIGDIERVLSRVALG 351 Query: 385 RGEPKD----------IAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 P+D I +R + I + L N+L +L G + L +L Sbjct: 352 TARPRDLVQLRQACAQIPFLRHALLPAIQTKSSKLLNELDHQL-GDFKDLHQL------- 403 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L S + ++ P RDG + +G DA LDE R +RD + + + L++K E + I LKI Sbjct: 404 LLSAIVENPPVLLRDGNVIAEGYDAELDELRKIRDHAGQFLVDLEIKERESSGIPTLKIG 463 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+IE+T + A ++ +I RQT+ N R+ T EL + E+++ ++ + A Sbjct: 464 YNRVSGYYIELTRAQAE------QAPAYYIRRQTLKNAERYITPELKNFEDKVLSSESRA 517 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L E FE L + + +L S IA ID+ A A+ QN+ RP + Sbjct: 518 LAREKLLFESLLETLKKNIANLQMMSSAIAQIDVLANFAHQARLQNWNRPDFSPEIGIKI 577 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 DGRHP+VE S P+ AND L + ++ ++TGPNMGGKSTF+RQ ALI Sbjct: 578 HDGRHPVVEAL----SKTPYTANDTFLDSQH-----RMAIITGPNMGGKSTFMRQTALIS 628 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++A GSYVPA A +G +D++F+R+GSAD+L++G+STFMVEM ET+ IL+ AT+QS V+ Sbjct: 629 LLAYCGSYVPAKSAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATHQSLVL 688 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DE+GRGT+T DGLS+AWA + L + +C L ATH+ ELT+L S N + + Sbjct: 689 MDEVGRGTSTYDGLSLAWACVLDLTKRIKCLCLFATHYFELTELG-SESAIDNYHVTAKE 747 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN-----QKD 849 N +I LHKV G A S+G+QV KLAG+P +VI A LK EK Q D Sbjct: 748 MNGNLILLHKVQHGPASQSHGLQVAKLAGIPASVIKEAQKRLKILEKQQQQYFQTAVQND 807 Query: 850 MRLYYPEI-QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + PE+ Q E+K + K + ++ +K L++D ++P AL+ LY +K Sbjct: 808 L-FAIPELPQIDETKIEIKKTSPV-LDHLKQLDVDSLTPRQALEALYQLK 855 >gi|127512146|ref|YP_001093343.1| DNA mismatch repair protein [Shewanella loihica PV-4] gi|166232136|sp|A3QC86|MUTS_SHELP RecName: Full=DNA mismatch repair protein mutS gi|126637441|gb|ABO23084.1| DNA mismatch repair protein MutS [Shewanella loihica PV-4] Length = 855 Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust. Identities = 308/879 (35%), Positives = 476/879 (54%), Gaps = 37/879 (4%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 L+ TPMMRQY+ +K+ PD L+FYRMGDFYELF+DDA AS LGI+LT RGK G I Sbjct: 9 LEKHTPMMRQYLTLKAETPDMLLFYRMGDFYELFYDDAKRASELLGISLTARGKSGGDPI 68 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PM G+P H Y+ KL+++ +AICEQI P K V R +VR+VTPGTLT+ Sbjct: 69 PMAGIPYHAVEGYLAKLVQLRVSVAICEQIGDPAT-----TKGPVERKIVRIVTPGTLTD 123 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFS 200 + LL N L AV + + A +D+S+G F ++ ++ + L +++ R +P E+++S Sbjct: 124 EALLQERQDNLLAAVYHGKVGFGYATLDVSSGRFVVTELASKEALEAELQRTNPAELLYS 183 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTA 259 E A SL + +P FD+ S + + + + FG ++ A Sbjct: 184 EDFSEPALIASL-----SGKRRRPEWEFDYDTSYKLLLEQFGTKDLYGFGLGEVRLSLQA 238 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A I Y+K TQ P I R + ++ +D+A R NLE+ R L G + +L +D Sbjct: 239 AGCLIQYVKDTQRTALPHINAITRFNQCDSIVLDAATRKNLELTRNLQGGSDNTLASVLD 298 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G R+ I PL + I R D+I+ + N + + LK+ D+ R + Sbjct: 299 NTATPMGSRMLQRWIHEPLRNHNIIRARHDAIDELLDNGYH-ESLHEQLKALGDIERITA 357 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 RL I P+D A +R + I + P L+ L P+ LS + Sbjct: 358 RLAIRSARPRDFARLRQALALLPEIQQQLADCNSPH-LKALSSHLGDFPEE-HALLSRAI 415 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 D+ P RDGG +++G LDE R L + +A L+ + T LK+ +N Sbjct: 416 VDNPPMLIRDGGVIKEGYHNELDEWRKLSQGATDYLAELEAREKAATGASTLKVGYNRVH 475 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IEV+ + ++ + RQT+ N R+ EL + E ++ ++ AL +E Sbjct: 476 GYYIEVSRRESDLVPMS------YQRRQTLKNTERYIVAELKEHEEKVLSSQGKALALEK 529 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 + +E L + ++ + L ++ A +D+ A A++ +Y RP + + ++ GRH Sbjct: 530 QLWEELFDLLMPRLHELQAFARAAAELDVITNFAERAEQLDYHRPELTAQSGIHIEAGRH 589 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE+ S PFIAN L+ + ++ ++TGPNMGGKST++RQ ALI +MA + Sbjct: 590 PVVERV----SQTPFIANPVSLNP-----ARRMLIVTGPNMGGKSTYMRQVALITLMAHI 640 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPA A IG VD++F+R+G+AD+LASGRSTFMVEM ETA+IL+ AT +S V++DEIG Sbjct: 641 GSFVPAQKAAIGPVDRIFTRIGAADDLASGRSTFMVEMTETANILHNATPESLVLMDEIG 700 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGT+T DGLS+AW+ E+L + + L ATH+ ELT L ++ N L + ++ I Sbjct: 701 RGTSTYDGLSLAWSAAEHLAQNLKSMTLFATHYFELTQLPDQMENVANVHLDAIEHDDTI 760 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 F+H V G A SYG+QV LAG+P V+ A KL+H +D PE++ Sbjct: 761 AFMHAVQEGAASKSYGLQVAALAGVPAKVVQAAK------HKLHHLESRDREEELPELRQ 814 Query: 860 KESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + + K ++++ ++ D ++P AL LY +K Sbjct: 815 AQLSMTMPETSKA-LDRLDTIDPDSLTPRQALDLLYELK 852 >gi|255319932|ref|ZP_05361132.1| DNA mismatch repair protein MutS [Acinetobacter radioresistens SK82] gi|255302952|gb|EET82169.1| DNA mismatch repair protein MutS [Acinetobacter radioresistens SK82] Length = 883 Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust. Identities = 328/892 (36%), Positives = 499/892 (55%), Gaps = 41/892 (4%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L TPMM+QY+++K + +L+FYRMGDFYELFFDDA A++ LGITLT RGK G Sbjct: 9 DLSPHTPMMQQYLKVKMQHNYALLFYRMGDFYELFFDDAHKAAKLLGITLTHRGKANGNP 68 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM GVP H+A Y+ +L+K G +AICEQ+ + K V R VVR++TPGTLT Sbjct: 69 IPMAGVPYHSAEGYLARLVKAGETVAICEQV------GEVTGKGPVERKVVRILTPGTLT 122 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH--DRLISDIMRIDPREII 198 +D LLS S+ L+A+ + + IA +D+S GIFK+ + ++L ++ R+ P EI+ Sbjct: 123 DDALLSSYQSSNLVALCFQQNQVGIALLDLSAGIFKVQQQEYRAEQLAIELSRLMPSEIL 182 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 E + + + + + +PNV F+ + ++ + D + ++T+ FG + K Sbjct: 183 VDEDLVDANIIEQIKKQIDCPVTKRPNVDFNLNNAQKTLCDQFAVSTLSGFGIDHLPLAK 242 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AAAA I Y K+TQ P I E + +D R NLEI+ L SL Sbjct: 243 AAAAALIHYAKETQKTALPHIRSIRLEQSSDFIALDPVTRRNLEIIDPLF-EHGTSLFHL 301 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 I+ T G RL + + P+ D+ + RLD+I ++ P++ +LK D+ R Sbjct: 302 INECQTAMGSRLLSRTLMQPIRDTVILEARLDAIEQLVKG-YHEAPVRLVLKEISDIERV 360 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLK----NDLPEELRGAVEKLKKLPQSLEK 433 LSR+ +G P+D+ +R S I L L+ N + L ++L + L + Sbjct: 361 LSRIALGTARPRDLVQLRQAC-SQIPFLRHALQPVIDNKKTKMLHQLYQELGDF-KVLSE 418 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 LSS + ++ P RDG + +G D LDE R +RD + + + L+++ E+T I LKI Sbjct: 419 RLSSAIVENPPVLLRDGNVIAEGFDHELDELRKIRDHAGQFLIDLEIQEREQTGISTLKI 478 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GY+IE+T + A ++ + +I RQT+ N R+ T EL E+++ ++ + Sbjct: 479 GYNRVSGYYIELTRAQAE------QAPEHYIRRQTLKNAERYITPELKSFEDKVLSSESR 532 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL E FE++ + + SL S IA ID+ A A+ +++ RP Sbjct: 533 ALAREKLLFELILEELRQDIASLQVMSSAIAQIDLLANFAYQARLKSWNRPEFSPEVGIK 592 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + GRHP+VE S P+ ND L D N ++ ++TGPNMGGKSTF+RQ ALI Sbjct: 593 IIAGRHPVVESL----SKTPYTPNDTSL----DFNH-RMAIITGPNMGGKSTFMRQTALI 643 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 ++A GS+VPA A +G +D++F+R+GSAD+L+SG+STFMVEM ET+ IL+ AT+QS V Sbjct: 644 SLLAYCGSFVPAQSARLGPIDRIFTRIGSADDLSSGKSTFMVEMTETSQILHHATSQSLV 703 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DE+GRGT+T DGLS+AWA + L + +C L ATH+ ELT+L + N + Sbjct: 704 LMDEVGRGTSTYDGLSLAWACVLDLTKRIKCLCLFATHYFELTELGQE-AGIDNYHVTAK 762 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN-----QK 848 + N +I LHKV PG A S+G+QV KLAG+P +VI A LK EK + Q Sbjct: 763 EMNGNLILLHKVQPGPASQSHGLQVAKLAGIPASVIKEAQKRLKILEKQQQQHLQTVVQN 822 Query: 849 DM--RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 D+ + E+ + K + +E ++ L++D +SP AL LY +K Sbjct: 823 DLFDVVPPVVSPVTETIMEVEKTSPV-LESLEQLDVDSLSPREALAQLYKLK 873 >gi|291288723|ref|YP_003505539.1| DNA mismatch repair protein MutS [Denitrovibrio acetiphilus DSM 12809] gi|290885883|gb|ADD69583.1| DNA mismatch repair protein MutS [Denitrovibrio acetiphilus DSM 12809] Length = 854 Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust. Identities = 297/879 (33%), Positives = 499/879 (56%), Gaps = 43/879 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+Q+ ++K PD++VF+RMGDFYE+F DDA+ S+ LGI LT R K+ +PMCG Sbjct: 8 TPMMQQFFDVKEKYPDTIVFFRMGDFYEMFGDDAVETSKILGIALTSRDKNKDNGMPMCG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+ Y+ K++K G +AIC+Q+E P +AK +V+R V ++ TPGT+ +D L Sbjct: 68 VPHHSYQQYLIKMLKAGKNVAICDQLEDPAQAK-----GIVKRGVTKVHTPGTVIDDAAL 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 TD+NYL V + + IA+ D+STG + + I R +P+EII S Sbjct: 123 PATDNNYLATVYKAEKIY-IAFTDLSTGEVYLEKCGANYAGDTIARYNPKEIITS----F 177 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAIS 265 ++ + FE G+ F +++ + ++Y++ + + G A+ Sbjct: 178 NSGIEGAFEFGGS---------FSETLASREVMEHYSVGAMKSLGLDEITFAAPIYMALK 228 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILR-TLSGSREQSLLKTIDYSITG 324 Y+++ + T+ P+ +++DS A S LE+++ + GS + +L ++++ T Sbjct: 229 YMQRVML--DVTLLKPKLVTDDERVYLDSVAISTLELVKNSRDGSEKDTLYSVLNHTNTT 286 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 G R + + SPL ++ I R + I FFI N + ++ L+ D+ R +RL Sbjct: 287 MGARTLKKWLLSPLRNTNTILRRQEIIEFFINNQTTADALRDQLERVYDIERITTRLSAN 346 Query: 385 RGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLP 444 R +D+ +++ + I + + P + E+ L + + S + D+ P Sbjct: 347 RCNARDLVWLKNSTETFPTIKYMLSSCENPH-IADLTEEFDDL-NDITVLIESAIEDEPP 404 Query: 445 TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIE 504 +GG ++ G + +DE + +++ S++I+ ++ + +T I +LK+K N GY+IE Sbjct: 405 VTITEGGLIKKGFNPEVDELKDIKENSRQILLKIESEQRAKTGISSLKVKFNKVFGYYIE 464 Query: 505 VTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEI 564 ++ + + + ++ + +QT+ N RF EL +LE +I +A + + +E E F Sbjct: 465 ISKAYLNRVPEE------YTRKQTLVNAERFIIPELKELEEKILHADSRLVNLEYEIFSE 518 Query: 565 LSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEK 624 + + E + L +++ I+ +D ++LA A + +Y +P++ + + + +GRHP+VEK Sbjct: 519 IRRQVSESAARLRSSAATISELDCLLSLAKTAVQNDYRKPLVGDFDDIKITEGRHPVVEK 578 Query: 625 TLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684 + + ++ ND ++ D N KL ++TGPNM GKST+LR ALI +MA +GSYVP Sbjct: 579 NI----NSAYVPNDIEM----DINRNKLTIITGPNMAGKSTYLRMCALITLMAHIGSYVP 630 Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744 AS A IGIVD++F+RVG++DNLA G STFMVEM+E A+ILN AT++S +ILDE+GRGT+T Sbjct: 631 ASEAEIGIVDRIFTRVGASDNLAGGESTFMVEMVEAANILNNATDKSLIILDELGRGTST 690 Query: 745 LDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHK 804 DG+SIAW+ EY+ + + L ATH+HELTD+S + + N +V + +IF+ K Sbjct: 691 FDGVSIAWSVAEYIADHINAKTLFATHYHELTDISLTTQGVRNCATEVVEHEGELIFMRK 750 Query: 805 VIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKN 864 V PG AD SYGI V +LAGLP VI+RA DIL+ EK Q E + K + Sbjct: 751 VRPGTADKSYGIHVAELAGLPKEVITRANDILRNLEKNELSPQGIANTPKKEKKQKSHER 810 Query: 865 NLSK-----NDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + +D ++++K L++D ++PL AL L +K Sbjct: 811 GVVQTMLVFDDHPVLDELKALDVDALTPLQALNLLSELK 849 >gi|237709143|ref|ZP_04539624.1| DNA mismatch repair protein [Bacteroides sp. 9_1_42FAA] gi|229456839|gb|EEO62560.1| DNA mismatch repair protein [Bacteroides sp. 9_1_42FAA] Length = 883 Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust. Identities = 312/884 (35%), Positives = 495/884 (55%), Gaps = 38/884 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+Q+ E+K+ +PD+++ +R GDFYE + +DA++AS LGITLTKR K + M G Sbjct: 21 TPMMKQFFELKAKHPDAIMLFRCGDFYETYSEDAIVASEILGITLTKRANGQAKSVEMAG 80 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KL++ G R+AIC+Q+E P KK LV+R + LVTPG D +L Sbjct: 81 FPFHALDTYLPKLVRAGKRVAICDQLEDPKMTKK-----LVKRGITELVTPGVAINDNVL 135 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF--SEKE 203 S ++N+L AV + +A++DISTG F + D + + P+E++F ++ Sbjct: 136 SYKENNFLAAVHFGKASCGVAFLDISTGEFLTAEGPFDYIDKLLNNFAPKEVLFERGKRG 195 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + + S F T + F+ S S ++ ++ + FG A+ A Sbjct: 196 MFEGNFGSKFFTF-----ELDDWVFNESSSREKLLKHFETKNLKGFGVEHLKNGIVASGA 250 Query: 264 I-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 I Y+ TQ I R + + +D +LE++ +++ SLL ID +I Sbjct: 251 ILQYLNMTQHYQIGHITSLSRIEEDRYVRLDKFTVRSLELIGSMNEGG-TSLLDVIDRTI 309 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 + G RL + PL D +N RLD + +F + P I++ L D+ R +S+ Sbjct: 310 SPMGARLLKRWVVFPLKDEKPVNERLDVVEYFFREPDFKEFIEEKLHLIGDLERIVSKAA 369 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 +GR P+++ ++ +++ I N L D LR E+L L S+ + ++ + +D Sbjct: 370 VGRISPREVVQLKVALQAIEPIKNACLNAD-NGSLRRIGEQLN-LCLSIREKIAKEVKND 427 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P GG + DG +A LDE R + K + +Q + +E T I +LKI +NN GY+ Sbjct: 428 PPLLVNKGGVIADGVNAELDELRQIAFSGKDYLLKVQQRESELTGIPSLKIAYNNVFGYY 487 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IEV ++ + D +I +QT+ N R+ T EL + E +I A + L++E + + Sbjct: 488 IEVRNTHKDKVPAD------WIRKQTLVNAERYITQELKEYEEKILGAEDKILVLETKLY 541 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 L A+ E ++ + IA +D +A A +A+E NY RP++++S ++ GRHP++ Sbjct: 542 NELVIALAEFIPAIQINANQIARLDCLLAFANVARENNYIRPVVEDSEVIDIRQGRHPVI 601 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 EK L + +IAND L D + ++ ++TGPNM GKS LRQ ALI ++AQMGS+ Sbjct: 602 EKQLP--VGEKYIANDVFL----DSETQQIIIITGPNMAGKSALLRQTALITLLAQMGSF 655 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA A IG+VDK+F+RVG++DN++ G STFMVEM E A+ILN +++S V+ DE+GRGT Sbjct: 656 VPAESARIGMVDKIFTRVGASDNISVGESTFMVEMNEAANILNNLSSRSLVLFDELGRGT 715 Query: 743 ATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 +T DG+SIAWA +E++HE + R L ATH+HEL ++ KS KR N + V + + +I Sbjct: 716 STYDGISIAWAIVEHIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEIDNKVI 775 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 FL K+ G ++HS+GI V K+AG+P +++ RA DIL E + Q+ + EI + Sbjct: 776 FLRKLERGGSEHSFGIHVAKMAGMPKSIVKRANDILHQLET--DNRQQGIAKPTAEIASG 833 Query: 861 ESKNNLS--KNDKLFVEKIK--CLNLD--EMSPLTALKTLYAVK 898 S LS + D + +I+ LNLD ++PL AL L +K Sbjct: 834 RSGMQLSFFQLDDPVLGQIRDEILNLDVNNLTPLEALNKLNDIK 877 >gi|160939142|ref|ZP_02086493.1| hypothetical protein CLOBOL_04036 [Clostridium bolteae ATCC BAA-613] gi|158438105|gb|EDP15865.1| hypothetical protein CLOBOL_04036 [Clostridium bolteae ATCC BAA-613] Length = 881 Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust. Identities = 321/904 (35%), Positives = 499/904 (55%), Gaps = 67/904 (7%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+ Y+E K PD ++FYR+GDFYE+FFDDAL S+ L ITLT + L + PMCGVP Sbjct: 1 MMQHYMETKKEYPDCVLFYRLGDFYEMFFDDALTVSKELEITLTGKDCGLSERAPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H + Y+ +L++ G+++AI EQ+E P +AK LV+R V+R+VTPGT+T Q+L Sbjct: 61 FHALDSYLYRLVQKGYKVAIAEQMEDPRQAK-----GLVKREVIRVVTPGTITSSQVLDE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREII----FSEK 202 T +NYLM + + + I+ DISTG F ++ + DR L +I + P EII F Sbjct: 116 TKNNYLMGIVYMDGIYGISTADISTGDFMVTEVDSDRELFDEINKFSPSEIICNNAFYMS 175 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 + E K+ ++ V A + FF + +++ + + G AA Sbjct: 176 GVDMDELKNRYQV---VISALDSRFFGEESCRRILMEHFKVGALVGLGLEDYATGIIAAG 232 Query: 263 AI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDY 320 A+ YI +TQ I + ID++ R NLE++ T+ +++ +LL +D Sbjct: 233 AVMQYIYETQKSTLEHITTITPYSTGQYMVIDTSTRRNLELVETMREKQKRGTLLWVLDK 292 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G RL I PL +I R +++ N I I + L D+ R + R Sbjct: 293 TKTAMGARLLRACIEQPLIHRDEIIKRQNAVEELNMNYISREEICEYLNPIYDLERLIGR 352 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE---ELRGAVEKLKKLPQSLEKTLSS 437 + P+D+ RS + +L ++K L E EL + + Q + + + Sbjct: 353 ISYKTANPRDLI----AFRSSLEMLP-YIKRILGEFNSELLAELGRELDPLQDIFQLIGD 407 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + ++ P R+GG ++DG + D+ R + + K +A L+ K E+T IK LK+K N Sbjct: 408 AIVEEPPITVREGGIIKDGYNQEADKLRHAKTEGKNWLAELEAKEKEKTGIKTLKVKFNK 467 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+ EVT+S KD + D +I +QT++N RFTT EL LE+ I A + + Sbjct: 468 VFGYYFEVTNSF-----KD-QVPDYYIRKQTLTNAERFTTDELKQLEDIIMGAEEKLVSL 521 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + F + + I + + ++ IA ID+ +L+++A +NY +P I++ +K+G Sbjct: 522 EYDLFCEVRDKIGAEVIRIQKTAKSIAGIDVFCSLSVVATRRNYVKPSINDKGVIQIKNG 581 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ ++ F+AND L D +L ++TGPNM GKST++RQ ALIV+MA Sbjct: 582 RHPVVEQMMRDDM---FVANDTFL----DNGKNRLSVITGPNMAGKSTYMRQVALIVLMA 634 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+GS+VPA A IGI D++F+RVG++D+LASG+STFMVEM E A+IL AT S ++LDE Sbjct: 635 QLGSFVPAQEADIGICDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATRNSLLVLDE 694 Query: 738 IGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 IGRGT+T DGLSIAWA IE++ + + L ATH+HELT+L ++ N + V + Sbjct: 695 IGRGTSTFDGLSIAWAVIEHISNSKLLGAKTLFATHYHELTELEGTIAGVKNYCIAVKEQ 754 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 + I+FL K++ G AD SYGIQV KLAG+P++VI+RA +I + + D+ Sbjct: 755 GDDIVFLRKIVRGGADKSYGIQVAKLAGVPDSVIARAKEIAEEL------SDADITARAK 808 Query: 856 EIQTKESKNNLSKN---------------------DKLFVEKIKCLNLDEMSPLTALKTL 894 EI E +N++++ D + ++ L L M+PL A+ TL Sbjct: 809 EI--AEISSNITQHKAVPKPDEVDLQQLSFFDTVKDDDIIRELDSLELSTMTPLDAMNTL 866 Query: 895 YAVK 898 Y ++ Sbjct: 867 YRLQ 870 >gi|254489938|ref|ZP_05103133.1| DNA mismatch repair protein MutS [Methylophaga thiooxidans DMS010] gi|224465023|gb|EEF81277.1| DNA mismatch repair protein MutS [Methylophaga thiooxydans DMS010] Length = 842 Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust. Identities = 306/873 (35%), Positives = 478/873 (54%), Gaps = 38/873 (4%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY+ IK+ +P+ L+FYRMGDFYELFFDDA A+ L ITLT RG G IPM GVP Sbjct: 1 MMQQYLRIKAEHPEFLLFYRMGDFYELFFDDAHKAAELLDITLTARGSSNGAPIPMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A+ Y+ +LIK+G +AICEQI P AK +G V R VVR++TPGTLTE+ LL Sbjct: 61 YHAADGYLSRLIKLGESVAICEQIGDP--AKSKGP---VEREVVRVLTPGTLTEEALLDS 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEKELSH 206 + N L+AV+ + + +A +IS+G F +S + + +++ R+ EI+ S+ EL Sbjct: 116 RNENLLVAVSHNKGRYGLASAEISSGRFVVSELDSLSDIQAELARLQAAEILISDTELDD 175 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAAAAAIS 265 F A P F+ + R+ +++N T + FG + AA I+ Sbjct: 176 ------FGAFAKQLRALPEWHFEQKAANRRLCEHFNTTDLKGFGCDELDLAIQAAGCLIN 229 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y ++T P + E + ++ +D +R NLE+ + LSG RE +L+ +D + T Sbjct: 230 YAQQTHRTALPHLRRINVEFTRDSIKLDPPSRKNLELEQNLSGGRENTLISVLDRTATPM 289 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 G R+ + P+ D + R + I FI + +++S D+ R L+R+ + Sbjct: 290 GARMLRRWLMRPVRDQKILRQRQEVIQQFIDQHHFTD-CHDLMRSLGDIERILTRIALRT 348 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPT 445 P+D +R + + ++ LK +R L + L L + + D+ P Sbjct: 349 ARPRDFMHLRQMLEI-LPAMHQLLKPMTSLHIRHLDRTLGTFSELL-TLLQTAIIDEPPV 406 Query: 446 FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEV 505 RDGG ++ G + LD R L + + L+ + E T + LK+ +N GYFIE+ Sbjct: 407 LIRDGGVIKPGFNNELDHLRDLHQNASGFLDKLEKEERERTGVSTLKVGYNKVHGYFIEL 466 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEIL 565 + + D++ ++ RQT+ N R+ T EL E ++ +A AL +E ++ L Sbjct: 467 SRA------HDIDVPTEYVRRQTLKNAERYITPELKAFEEQVLSANEKALALEKSLYDGL 520 Query: 566 SNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKT 625 + + + +L++++ +A +D+ LA A+ +Y P + +++GRHP+VE Sbjct: 521 FDRVAPELAALEHSAAALAELDVLANLAERAETLDYVAPSFSDVPGIHIENGRHPVVEVC 580 Query: 626 LKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPA 685 PF AND LS + ++TGPNMGGKST++RQ ALIV+MA MGSYVPA Sbjct: 581 ----QPHPFCANDLKLS-----GEQPMLIITGPNMGGKSTYMRQTALIVLMAHMGSYVPA 631 Query: 686 SYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATL 745 + A IG VD++F+R+G++D+LASGRSTFMVEM E A+ILN AT S V++DEIGRGT+T Sbjct: 632 TKAVIGPVDQVFTRIGASDDLASGRSTFMVEMNEAANILNNATQHSLVLMDEIGRGTSTF 691 Query: 746 DGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKV 805 DGL++AW+ E L L ATH+ E+T L ++ N L + + I+FLH++ Sbjct: 692 DGLALAWSCAEKLIRDIGAYTLFATHYFEMTQLPALFEKARNVHLDAIEHGDKIVFLHQL 751 Query: 806 IPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNN 865 G A+ SYG+QV +LAG+P+ VI+ A L+ E+ + + P++ SK Sbjct: 752 KDGAANQSYGLQVAQLAGVPDDVIAAARVKLQQLEQNRYQADDEANQPQPDLFVVPSKPE 811 Query: 866 LSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 K +++ +N DE+SP AL LY ++ Sbjct: 812 WEK-------RLQAVNPDELSPKQALDVLYELR 837 >gi|120555003|ref|YP_959354.1| DNA mismatch repair protein MutS [Marinobacter aquaeolei VT8] gi|166232124|sp|A1U2E8|MUTS_MARAV RecName: Full=DNA mismatch repair protein mutS gi|120324852|gb|ABM19167.1| DNA mismatch repair protein MutS [Marinobacter aquaeolei VT8] Length = 874 Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust. Identities = 299/824 (36%), Positives = 455/824 (55%), Gaps = 30/824 (3%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L TPMM+QY++IK +P+ +VFYRMGDFYELF+DDA A+ L ITLT RG+ G Sbjct: 3 DLSKHTPMMQQYLKIKGEHPNEMVFYRMGDFYELFYDDAKKAAELLDITLTARGQSGGNP 62 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM GVP H+A YI ++++ G IAICEQI P +K V R VVR+VTPGTL+ Sbjct: 63 IPMAGVPFHSAEGYIARMVRAGQSIAICEQIGDPAT-----SKGPVERKVVRIVTPGTLS 117 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIF 199 ++ L N L A+ + ++ A +DIS+G F +S + + L ++ R+ P EI+ Sbjct: 118 DEAFLEDRRDNLLAAIYHHKEQFGFASLDISSGRFAVSELESLEALQGELQRLRPAEILI 177 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKT 258 SE Y + E V P F+ + I + + FG + Sbjct: 178 SED----FPYTDILEGFTGVRRQGP-WLFESDTALRVITQQLQVRDLTGFGCEDLTLAVC 232 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA + Y K+TQ P I RE + + +D+A+R NLEI L G ++ +L + Sbjct: 233 AAGCLLQYAKETQRTALPHIRKLTRERREDAVILDAASRRNLEIDTNLMGGQQHTLAWVM 292 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D + T G R + PL D ++ R +++ + P+ +LK D+ R L Sbjct: 293 DRTATAMGARELRRWLNRPLRDVERVRQRQQAVSALLDG-FHYEPVHDLLKRVGDIERIL 351 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 +R+ + P+D+A +RD + + L LK + + + P+ L L Sbjct: 352 ARVALRSARPRDLARLRDAFHA-LPELQEALKPVNSHHVVKLATVIGEYPE-LADLLERA 409 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + D+ P RDGG + +G D LDE R++ + + + + ++ + E T I LK+ +N Sbjct: 410 IIDNPPVVIRDGGVIAEGFDEELDELRNISENAGQYLLDVETRERERTGISTLKVGYNRV 469 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IE++ + + D +I RQT+ N RF T EL + E++ +A + AL E Sbjct: 470 HGYYIEISRAQSDQAPVD------YIRRQTLKNAERFITPELKEFEDKALSAKSRALARE 523 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 ++ + + EQ L +A+Q +A +D+ A A + P + F V++GR Sbjct: 524 KGLYDDVLETVAEQLAPLQDAAQALAELDVLSNFAERATSLRFTAPEFTDQPGFDVEEGR 583 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ L + PF+ N+ + ++ ++TGPNMGGKST++RQ ALI ++A Sbjct: 584 HPVVEQLLDE----PFVPNNLLMDTKR-----RMLVITGPNMGGKSTYMRQAALIALLAY 634 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 GS+VPA+ A +G VD++F+R+GS+D++A GRSTFMVEM ETA+IL+ AT S V++DE+ Sbjct: 635 TGSFVPANRAVLGPVDRIFTRMGSSDDIAGGRSTFMVEMTETANILHNATEHSLVLMDEV 694 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGLS+AWAT E+L + RC L ATH+ ELT L+ L+ N L ++ ++ Sbjct: 695 GRGTSTFDGLSLAWATAEHLAKNIRCYTLFATHYFELTQLADDLEHAVNVHLTATEHDDS 754 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 I+FLH V G A SYG+QV KLAG+P VI A L E L Sbjct: 755 IVFLHNVHDGPASQSYGLQVAKLAGVPQDVIRNAKTQLAHLEGL 798 >gi|227872342|ref|ZP_03990695.1| DNA mismatch repair protein MutS [Oribacterium sinus F0268] gi|227841806|gb|EEJ52083.1| DNA mismatch repair protein MutS [Oribacterium sinus F0268] Length = 881 Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust. Identities = 312/904 (34%), Positives = 494/904 (54%), Gaps = 64/904 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMMRQY+E K PD+L+FYR+GDFYE+FF+DA+ AS+ L + LT + L + PMCG Sbjct: 7 SPMMRQYLESKKEVPDALLFYRIGDFYEMFFEDAIKASKALDLVLTGKDCGLEERAPMCG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H A+ Y+ KL+ G ++AI EQ+E P AK LV+R ++R++TPGT TE+ L Sbjct: 67 IPYHAADSYVSKLVSQGFKVAIGEQVEDPKLAK-----GLVKREIIRVITPGTQTEETAL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 +NYL A+ + +A +DISTG ++ +S S+ L+ +I R P+EI+ L Sbjct: 122 EEGKNNYLSAIYPGNSGIGLATVDISTGELYSLSVSDSKELLDEISRFSPKEILCPIGFL 181 Query: 205 SHAEYKSLFETLGNVAVAQPNV-FFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 E S ++ ++++ + +F ++ ++ +++ + + +E+ A A Sbjct: 182 EDKELSSALDSRFSLSITEKEKEYFGKEEADKILSSHFSSSIPGLGLEHAPLERRALGAC 241 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSI 322 + Y+ TQ I + ER + + +D + + NLE+ TL +++ SLL +D + Sbjct: 242 LRYLYDTQKNILSHIRHIERFHREDYMLLDLSTQRNLELWETLRDKKKRGSLLWVLDKTH 301 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G R+ + PL + K+ RLD I Q I +++ L S D+ R + ++ Sbjct: 302 TAMGSRMLRHFLERPLRERKKMEERLDCIEELCQRYIDGEELREYLDSIYDMERLIGKIS 361 Query: 383 IGRGEPKDIAVIRDG------IRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 I +D+ ++ I+ ++ + L DL +++ E ++ + +E Sbjct: 362 ISSANARDMLALKSSLQFLPVIKRTLSSFSGKLLQDLGQKMDALEEIYTRIDECIE---- 417 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 +D P ++GG ++ + R + K + L+ + E++ IKNLKIK+N Sbjct: 418 ----EDPPLSIKEGGIIKSSFHEEVRLFREAGEHGKEWLNRLEEQEREKSGIKNLKIKYN 473 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY E++ S E D FI RQT++ R+TT+EL DL+N+I A + Sbjct: 474 RIFGYCFEISKSYQG------EIPDYFIRRQTLAQAERYTTVELQDLQNKILGAAENLQQ 527 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E F L + + + ++ IA +D ++L+ +A ++ Y RP I+ N + D Sbjct: 528 LEYSLFVNLREELSRELGRMQKTAKEIAFLDACLSLSKVAMQEQYVRPKINEKGNLTIVD 587 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VEK L+ QS F+ ND L K+ ++TGPNM GKST++RQ ALIV+M Sbjct: 588 GRHPVVEKLLQDQS---FVPNDASLG-----KEEKIAIITGPNMAGKSTYMRQVALIVLM 639 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A +GS+VPA A I I D++F+RVG++D+LASG+STFMVEM E ++IL AT S +ILD Sbjct: 640 ASIGSFVPAKQADIPICDRIFTRVGASDDLASGQSTFMVEMSEVSNILRNATENSLLILD 699 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DGLSIAWA +EYL + + L ATH+HEL+ L L+ N + VS Sbjct: 700 EIGRGTSTFDGLSIAWAVVEYLAREIKAKTLFATHYHELSVLEGKLENVKNYCIAVSKEQ 759 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY--- 853 I FL K++PG AD SYGI V KLAG+P V+ RA +I N+KD+RL Sbjct: 760 GEIQFLRKIMPGGADESYGIDVAKLAGVPAPVLDRAREISSFL------NEKDLRLQHLD 813 Query: 854 ------------YPEIQTKESKNN-------LSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 +PE K + L K +K ++ I+ + + MSPL A+ L Sbjct: 814 FEEAPEEKFVEDFPEKSLKLGERGRKNFASALRKEEKEVLDCIRKDSFESMSPLEAINLL 873 Query: 895 YAVK 898 +++K Sbjct: 874 FSLK 877 >gi|154497030|ref|ZP_02035726.1| hypothetical protein BACCAP_01323 [Bacteroides capillosus ATCC 29799] gi|150273429|gb|EDN00557.1| hypothetical protein BACCAP_01323 [Bacteroides capillosus ATCC 29799] Length = 869 Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust. Identities = 310/893 (34%), Positives = 498/893 (55%), Gaps = 50/893 (5%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIP 82 +TPMMRQYI +K ++PD L+F+R+GDFYE+F +DA +ASR L +TLT R K + P Sbjct: 5 TTPMMRQYIRMKELHPDCLLFFRLGDFYEMFNEDAKVASRELELTLTSRDRSKPAEERTP 64 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP H+A+ YI +LI G+++AICEQ+E P AK LV R+V+R+VTPGTL + Sbjct: 65 MCGVPYHSADAYIARLIAKGYKVAICEQMEDPATAK-----GLVDRDVIRIVTPGTLMDA 119 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS----TSNHDRLISDIMRIDPREII 198 +L +NY+ AV A+A D+STG F + + + L +D+ PRE + Sbjct: 120 SMLEEGRNNYICAVYADSNGAALAVCDLSTGEFSAAPYTDAARSEHLFNDLGAYKPREAV 179 Query: 199 FSEKELSHAEYKS-LFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVE 256 S+ + A L + L F ++ ++ I + G + ++ Sbjct: 180 LSDGAFADAALTDFLTKKLECRCENGGEARFRSDMARETLS--RTIAELPPEGDAVVELA 237 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQS--TLFIDSAARSNLEILRTLSGSREQ-S 313 AA +SY+ +TQ + I S ++ +D AR LE+ T+ G ++ S Sbjct: 238 VQAAGGLLSYLYETQKTDLSHIAALTVHSSASRPSMELDLTARRTLELTETMRGKEKRGS 297 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T G RL + PL IN RL+++ + +PI + I L+ D Sbjct: 298 LLWVLDKTRTAMGHRLIRTWLEQPLLSPVAINRRLEAVKALVDDPIARDEIVLCLREITD 357 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINI---LNLFLKNDLPEELRGAVEKLKKLPQS 430 + R + R+ G +D+A + G+ ++ L F LP LR ++ L Sbjct: 358 LERLIGRIVYGTAGGRDLAALAAGLGHLPDLRALLEPFSAGLLPT-LRQELDDLA----D 412 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L ++S + DD P R+GGF+R G +A +D R++ K ++A ++ + E+T IK+ Sbjct: 413 LRGLITSAIDDDPPFSVREGGFIRAGYNADVDYLRNIMTNGKGMVAEVEAREKEKTGIKS 472 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ +N GY+IEV+ S + D +I +QT++N R+ T EL D+E+ I +A Sbjct: 473 LKVGYNKVFGYYIEVSKSYYD------QVPDTYIRKQTLANCERYITQELKDMEHTILSA 526 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 + + +E + F + + + + +++ +A +D+ + A +A + +YC P++D S Sbjct: 527 QDRVVALEYQLFCDVREKTAARVQEIQRSARAVAALDVLTSFACVAADNHYCMPVVDLSD 586 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 +++GRHP+VEK LK F+ ND + D + ++TGPNM GKST++RQ Sbjct: 587 RLDIEEGRHPVVEKMLKNAL---FVPNDAHM----DGGENLVAIITGPNMAGKSTYMRQV 639 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI +MAQMGS+VPA AHIGIVD++F+R+G++D+L++G+STFMVEM E A +L AT++ Sbjct: 640 ALIALMAQMGSFVPAKSAHIGIVDRVFTRIGASDDLSAGQSTFMVEMTEVAELLKNATSK 699 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNA 788 S +ILDEIGRGT+T DG+SIA A +EY + R + L ATH+HE+T L + N Sbjct: 700 SLLILDEIGRGTSTYDGMSIARAVLEYCADKKRLGAKTLFATHYHEITCLEGQIPGVKNY 759 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 + +IFL K++ G AD SYG++V KLAG+P VI+RA +IL+ E Q Sbjct: 760 NIAAKKRKGDVIFLRKIVRGGADQSYGVEVAKLAGVPERVITRAREILEELES----GQG 815 Query: 849 DMRLYYPEIQTKESKNNLSKND---KLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + P K +S D +++++ ++++ ++P+ A+ +Y +K Sbjct: 816 PCAV--PAAVPKADDGQISLTDMGGGEVLDRLRMVDINTLTPIEAMNLIYELK 866 >gi|169830744|ref|YP_001716726.1| DNA mismatch repair protein MutS [Candidatus Desulforudis audaxviator MP104C] gi|169637588|gb|ACA59094.1| DNA mismatch repair protein MutS [Candidatus Desulforudis audaxviator MP104C] Length = 882 Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust. Identities = 316/922 (34%), Positives = 496/922 (53%), Gaps = 77/922 (8%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR-GKHLGKDIPMC 84 TPMMRQY EIKS PD+++F++MGDF+E+FF+DA A+ L + LT R LG+ +PMC Sbjct: 4 TPMMRQYREIKSRYPDAILFFQMGDFFEMFFEDAEKAAPVLEVALTGRDAGELGR-VPMC 62 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G+PVH +Y+ KL+ G+R+AICEQ+E A+ + V R+VTPGTL E QL Sbjct: 63 GIPVHAVENYLGKLVAGGYRVAICEQVEDAQAARGVVRRE-----VTRVVTPGTLIERQL 117 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD----RLISDIMRIDPREIIFS 200 +NYL AV R W +A D+STG F + T D RL+ ++ R+ PRE++ + Sbjct: 118 PDERGNNYLAAVGRAGHGWGLAAADVSTGDFIVGTYTGDTAWTRLVEELARLAPREVLLA 177 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDH-SISESRIADYYNITTVDT----FG----- 250 G P F DH + + D Y T FG Sbjct: 178 GV------------PWGGEVPEPPRKFGDHVPAAVVTVPDPYLEAAAGTLEAHFGPDAVA 225 Query: 251 --SFSQ--VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL 306 S+++ + AA + Y+ +TQ + Y + + +D A R NLE+ + Sbjct: 226 SASWARHPAARQAAGVLLVYLNETQKRVLSHLRYVRSPLPERHMLLDGATRRNLELTASR 285 Query: 307 SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK 366 G R +L +D+++T GGR + + PL +I RLD++ + I +++ Sbjct: 286 DGGRRHTLFGVLDHTVTAMGGRRLRQWLEQPLLVVEEIRERLDAVGRLAADRIKRETLRE 345 Query: 367 ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK 426 LK D+ R R+ G +D+ + + + + +L L+G L + Sbjct: 346 RLKGMYDIERLAGRVAYGTAHARDLLALSSSLEAMFGVRDL---------LKGEPGLLGR 396 Query: 427 L------PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 L P L L L+DD P R+GG +R G D +D R +++ +A L+ Sbjct: 397 LAADIDPPAELVDLLKRALADDPPLSLREGGLIRAGYDPEVDRLREASTRAREWLAGLEA 456 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 + E T I++LK+ +N GY+IEVT ++ ++ +D + RQT+ N R+ T EL Sbjct: 457 QERERTGIRSLKVGYNRVFGYYIEVTRANQHLVPED------YRRRQTLVNAERYITPEL 510 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 + E+ I A + +E F L + + + + +++ +A +D +LA A +N Sbjct: 511 KEYESLILGARERMVELEYRLFVELRDRVHSELARIGRSARAVARLDALASLAEAAVREN 570 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDC--DLSCPNDKNSGKLWLLTGP 658 Y P++D++ +K+GRHP+VE+ L F+ ND D C ++ +LTGP Sbjct: 571 YTAPVVDDADRIRIKNGRHPVVERVL---GPGRFVPNDVLLDSDC-------RIMILTGP 620 Query: 659 NMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMI 718 NM GKST++RQ ALIV+MAQ+GS+VPA A IG+VD++F+RVG+ADNLA G STFMVEM Sbjct: 621 NMAGKSTYMRQVALIVLMAQIGSFVPAEAAEIGVVDRIFTRVGAADNLAGGESTFMVEMN 680 Query: 719 ETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDL 778 E +IL QAT S +++DE+GRGT+T DG+S+A A IEYLH + L +TH+HELT L Sbjct: 681 ECRAILEQATPSSLIVMDEVGRGTSTYDGMSLARALIEYLHRRVGAKTLFSTHYHELTTL 740 Query: 779 SKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKT 838 +L N T+ V++ + I+FLH+V+PG AD SYGIQV +LAGLP VI RA ++L+ Sbjct: 741 D-ALPGVVNHTVTVAEEGDEIVFLHRVVPGKADRSYGIQVARLAGLPPAVIVRAREVLER 799 Query: 839 FEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E + Q R + T + + + + + +++ L++ M+PL AL L + Sbjct: 800 LE----NGQAAER--WKRSATAQLELFPRQKEHPVLSELRRLDVLNMTPLEALSKLDEWQ 853 Query: 899 AWTLEKYSTDEDSEPLSSKQEN 920 + + + ++ P +++++ Sbjct: 854 RRLIRERTGGANAAPAGTRKKS 875 >gi|118443496|ref|YP_878178.1| DNA mismatch repair protein MutS [Clostridium novyi NT] gi|166232119|sp|A0Q0M6|MUTS_CLONN RecName: Full=DNA mismatch repair protein mutS gi|118133952|gb|ABK60996.1| DNA mismatch repair protein MutS [Clostridium novyi NT] Length = 909 Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust. Identities = 307/834 (36%), Positives = 492/834 (58%), Gaps = 55/834 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+E+K N D ++F+R+GDFYE+FF+DA A+R L + LT R L PMCG Sbjct: 4 TPMMKQYLEVKERNKDCILFFRLGDFYEMFFEDAETAARELELVLTGRDCGLENRAPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H AN YI +LI G+++AICEQ+E P +AK +V+R+V+++ TPGT ++ L Sbjct: 64 IPYHAANTYISRLITKGYKVAICEQLEDPSKAK-----GIVKRDVIKIYTPGTYSDASFL 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEKE 203 T +NYLM++ +A+ D+STG F+ + N ++ +I + P+EI+ + Sbjct: 119 EETKNNYLMSLYLENELVCMAFADVSTGDFQCTYVKYNESSILDEISKFMPKEIVIIDSI 178 Query: 204 LSHAE--YKSLFETLGNVAVAQPNVFF-DHSIS-ESRIADYYNITTVDTFGSFSQVEKTA 259 K FE + V + F+ + S++ +++ D+ ++ + T Sbjct: 179 DDTIIKAIKERFEV--SFTVKNKDFFYLNASLNLKNQFPDFKE-------ENYDDIVITG 229 Query: 260 AAAAISYI---KKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLL 315 ++YI +KT +++ + Y E D S ID +R NLE+ TL S++ SLL Sbjct: 230 CNGLLNYIIETQKTTLIHINKLDYYETVDYLS---IDINSRRNLELTETLRDKSKKGSLL 286 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T G RL + + PL I R +++ + N L++ ++ LK D+ Sbjct: 287 WVLDKTTTAMGARLLRKWVEQPLIHKEIIENRQNAVEEILNNVPLLDDLRNNLKDVYDIE 346 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN---DLPEELRGAVEKLKKLPQSLE 432 R ++ K++ +++ I + I+ ++N DL + + +++ L+ L L+ Sbjct: 347 RLAGKISSKTVNAKELLSLKNSI-GNLPIIKKIIENYNTDLLKNIYSSLDCLEDLYSLLD 405 Query: 433 KTLSSMLSDDLPTFK---RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 ++ LP+ ++GG ++DG + ++DE R + IASL+ + T IK Sbjct: 406 NSI-------LPSPALSIKEGGIIKDGYNKTIDELRMAKSHGTEWIASLEEQERNITGIK 458 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 +LK+K+N GY+IE+T S+ + + ++R+I +QT++N RF T EL ++E++I Sbjct: 459 SLKVKYNKVFGYYIEITKSNLNQV-----PENRYIRKQTLANCERFITPELKEVEDKILG 513 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 A + +E F + I ++ + N +++I+ ID+ +LAI+A E NY +PII Sbjct: 514 AQEKLMELEYNVFVEIRELIEKEIYRIKNTAKLISSIDVLQSLAIVALESNYSKPIIKLD 573 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 ++KDGRHP+VEK + + S F++ND L D +L L+TGPNM GKST++RQ Sbjct: 574 GELLIKDGRHPVVEKMIPRDS---FVSNDTIL----DNKDHQLLLITGPNMAGKSTYMRQ 626 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI +MAQ+GS+VPA A I I DK+F+R+G++D+LA G+STFMVEM E A+ILN ATN Sbjct: 627 VALITLMAQIGSFVPAKEAEIVICDKIFTRIGASDDLARGKSTFMVEMWEVANILNNATN 686 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHN 787 +S ++LDE+GRGT+T DGLSIAWA IEY+ + N + + L ATH+HELT L +K N Sbjct: 687 KSLILLDEVGRGTSTYDGLSIAWAVIEYICKDNNLKSKTLFATHYHELTSLEGKIKGVKN 746 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 ++ V ++ IIFL K+I G AD SYGI+V KLAG+P+ V +RA +IL T E+ Sbjct: 747 YSIAVKKVDDDIIFLRKIIEGGADESYGIEVAKLAGIPSVVTNRAKEILNTLEE 800 >gi|167854913|ref|ZP_02477689.1| DNA mismatch repair protein MutS [Haemophilus parasuis 29755] gi|167853980|gb|EDS25218.1| DNA mismatch repair protein MutS [Haemophilus parasuis 29755] Length = 865 Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust. Identities = 314/897 (35%), Positives = 488/897 (54%), Gaps = 56/897 (6%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 + N TPMM QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG+ G Sbjct: 4 QNNFLQHTPMMAQYLQLKAQNPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGQSAG 63 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM GVP H Y+ KL+ +G +AICEQI P +K V R VVR++TPGT Sbjct: 64 EPIPMAGVPYHAVEGYLAKLVALGESVAICEQIGDPATSK-----GPVERKVVRIITPGT 118 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREI 197 ++++ LL N + A+ + + +A+A +D+++G F IS N + L +++ R P EI Sbjct: 119 VSDEALLPERQDNLVAAIYQEKGVFALATLDMASGRFLISELPNKEALSAELQRTQPAEI 178 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVE 256 ++ E + S ++ L +P F+ + + + + FG + V Sbjct: 179 LYPE-DFSDVGILQGYKGLRR----RPVWEFELVTAIQLLNRQFGTQNLTGFGVEKAVVA 233 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 AA + Y ++TQ P I T+ +DSA R NLE+ L+G E +L Sbjct: 234 LCAAGCVLHYAQETQRTALPHINSIHLAQNSDTVLLDSATRRNLELTTNLAGGTENTLTS 293 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D +T G RL I P+ D K++TR +I +Q I P+Q +L+ D+ R Sbjct: 294 VLDKCVTSMGSRLLKRWIHQPIRDLAKLHTRQQTI-LALQKNERIEPLQPLLQQVGDMER 352 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT-- 434 L+R+ + P+D+ +R + +P+ ++ + + L +L++ Sbjct: 353 ILARVALRTARPRDLTRLRTALEH------------IPDIVKHSQHQTACLDNTLQQIAD 400 Query: 435 -------LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 L+ + D+ P RDGG + +G +A LDE RSL + + + + L+ + +T Sbjct: 401 FSELFELLNQAIIDNPPQLIRDGGVIAEGYNAELDEWRSLAEGATKFLEDLEARERAKTG 460 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 I LKI N GY+I+++ A ++ ++ RQT+ N R+ EL E+++ Sbjct: 461 IDTLKIGFNAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKTYEDKV 514 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 A ++L +E + ++ L ++ + L AS V+A +D+ LA A+ NY P Sbjct: 515 LKAKGASLALEKQLYDELFELLMPRLGELQLASFVLAELDVLTNLAERAESLNYVMPSFS 574 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 + +K GRHP+VE+ LK PFIAN L+ L ++TGPNMGGKST++ Sbjct: 575 HQRGVNIKGGRHPVVEQVLK----TPFIANPVLLNPQR-----HLLIVTGPNMGGKSTYM 625 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ ALI +MA +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+Q+ Sbjct: 626 RQIALITLMAYIGSFVPADSAEIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQS 685 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 + S V++DEIGRGT+T DGLS+AWA E+L + + L ATH+ ELT L LK N Sbjct: 686 SENSLVLVDEIGRGTSTYDGLSLAWACAEWLAKKTQSLTLFATHYFELTSLPNQLKGVAN 745 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH-- 845 L + N+ I F+H V G A SYG+ V LAG+P VI A L E+L Sbjct: 746 IHLDALEHNDTIAFMHSVQEGAASKSYGLAVAALAGVPKQVIQLAKQKLTQLERLSQQTA 805 Query: 846 ----NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 NQ+ L+ +Q E + L + K+ + + ++ DE++P AL+ LY +K Sbjct: 806 QLDANQQQDLLFSANLQNAEPISPLIEPSKV-EQALAEIDPDELTPKQALEMLYRLK 861 >gi|270264031|ref|ZP_06192299.1| DNA mismatch repair protein MutS [Serratia odorifera 4Rx13] gi|270042224|gb|EFA15320.1| DNA mismatch repair protein MutS [Serratia odorifera 4Rx13] Length = 851 Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust. Identities = 313/884 (35%), Positives = 482/884 (54%), Gaps = 45/884 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 + L S TPMM+QY+ +K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 DKLDSHTPMMQQYLRLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H +Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGVPHHAIENYLAKLVQLGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREII 198 T++ LL N L A+ + + A +DIS+G F+++ + + +++ R +P E++ Sbjct: 120 TDEALLQERQDNLLAAIWQDARGFGYATLDISSGRFRVAEPEDIETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + E E+ +L E + +P F+ + ++ + + FG Q + Sbjct: 180 YPET----FEHMALIEKRHGLR-RRPLWEFEPETARQQLNLQFGTRDLTGFG-VEQAHQA 233 Query: 259 --AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 AA + Y+K TQ P I E Q + +D+A R NLE+ ++LSG + +L Sbjct: 234 LRAAGCLLQYVKDTQRTALPHIRGITMERQQDGIIMDAATRRNLELTQSLSGGSDNTLAA 293 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D S+T G R+ + P D +N R +I +Q+ L +Q L+ D+ R Sbjct: 294 ILDRSVTAMGSRMLKRWLHMPTRDIKVLNNRQQAIGA-LQD--LYADLQPSLRQVGDLER 350 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKT 434 L+RL + P+D+A +R + +I L + P + L V + +L LE+ Sbjct: 351 ILARLALRTARPRDLARMRHAFQQLPDIHALLQGVETPHVQHLLSQVGQFNELQDLLERA 410 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L + P RDGG + G ++ LDE R+L D + + L+++ E+ + LK+ Sbjct: 411 LV----EAPPVLVRDGGVIAPGYNSELDEWRALADGASDYLDRLEIREREKLGLDTLKVG 466 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N GY+I+V+ + ++ ++ RQT+ N R+ EL + E+++ + A Sbjct: 467 FNGVHGYYIQVSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSKGKA 520 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L IE ++ L + ++ L ++ +A +D+ L A+ NY P + + Sbjct: 521 LAIEKGLYDELFDLLLPHLGELQQSAAALAELDVLANLTERAETLNYTCPTMSEQPGVRI 580 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 +GRHP+VE+ L S+PFIAN LS ++ ++TGPNMGGKST++RQ ALIV Sbjct: 581 TEGRHPVVEQVL----SEPFIANPLSLSPQR-----RMLIITGPNMGGKSTYMRQTALIV 631 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 +MA +GSYVPA+ A IG VD++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V+ Sbjct: 632 LMAHIGSYVPAAKAVIGPVDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEHSLVL 691 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 692 MDEIGRGTSTYDGLSLAWACAENLASRIKAMTLFATHYFELTTLPEKMEGVVNVHLDALE 751 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 + I F+H V G A SYG+ V LAG+P VI RA L+ E + H Sbjct: 752 HGDTIAFMHSVQDGAASKSYGLAVAALAGVPREVIKRARQKLRELEAISSHTASG----- 806 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 L++ VE ++ L+ D +SP AL+ LY +K Sbjct: 807 --TVDATQMTLLNEETSPAVEALEALDPDSLSPRQALEWLYRLK 848 >gi|325509251|gb|ADZ20887.1| DNA mismatch repair protein [Clostridium acetobutylicum EA 2018] Length = 869 Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust. Identities = 310/886 (34%), Positives = 505/886 (56%), Gaps = 41/886 (4%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S +PMM+QY+ IK + D ++F+R+GDFYE+FF+DA +ASR L + LT + L K PM Sbjct: 2 SISPMMQQYLSIKENHKDCILFFRVGDFYEMFFEDAEVASRELELVLTGKDCGLEKRAPM 61 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVP H Y KL+ G+++A+ EQ+E P AK +V+R+V++++TPGT T+ Sbjct: 62 CGVPHHAYAIYASKLVSKGYKVAVAEQLEDPSLAK-----GIVKRDVIKVLTPGTYTDSS 116 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREIIFSE 201 L T +NY+M++ A+ + DISTG F ++ + D ++++I + P+E++ E Sbjct: 117 FLEDTKNNYIMSLFIHDKVSAMCFADISTGEFNLTETELDFEIILNEISKFSPKELVLQE 176 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 L + E V N +F +E+ A + N V+ ++ K+ A Sbjct: 177 N-LDDKLVDKIRERFDVVYNRFSNEYFKEHRNENLKAQFSNYAEVN----MTEGLKSCAN 231 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDY 320 I YI TQ I ++ +I L ID +R NLE+ TL S++ SLL +D Sbjct: 232 GLIKYIIDTQKTALTHIDELQKYEIVDFLSIDINSRRNLELTETLKDKSKKGSLLWVLDK 291 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGR + I PL D KIN RLD++ + N ++++LK D+ R + Sbjct: 292 TSTAMGGRQIRKWIERPLIDDEKINLRLDAVEEMLTNVSYNEDLKELLKQVYDIERLAGK 351 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 + K++ +R I I L ++L + A++ L + + L +++ Sbjct: 352 ISSKSVNAKEMISLRGSIEKLPAIKKLIKNFNSELLVNMENALDDLGDIYKLLYESI--- 408 Query: 439 LSDDLPTFK-RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 +D P+ ++G +++G + +DE R + K+ IASL+ E T IK+LK+ +N Sbjct: 409 --NDNPSLSIKEGNIIKEGYNKDIDELRLAKSHGKQWIASLENTEREVTGIKSLKVSYNK 466 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IE+T S+ +++ + R+I +QT++N R+ T EL ++E +I A +L+ Sbjct: 467 VFGYYIEITKSNLNLV-----PEGRYIRKQTLTNSERYITPELKEMEEKILGAEEKLVLL 521 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E F + I ++ + + ++++++ +D + A +A+E NYC+P+I ++K+G Sbjct: 522 EYNVFCEIRERIEKEIDRIKGSAKILSELDCICSFADVARENNYCKPVIKRDGTLVIKEG 581 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VEK + +S F+AND ++ N N + L+TGPNM GKST++RQ LIV+MA Sbjct: 582 RHPVVEKVI---ASGNFVANDTVIN--NSDNV--MMLITGPNMAGKSTYMRQVGLIVLMA 634 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+G +VPAS A I I DK+F+R+G++D+L +G+STFMVEM E ++IL AT S ++LDE Sbjct: 635 QIGCFVPASAAEISICDKIFTRIGASDDLNAGKSTFMVEMWEVSNILKNATKNSLILLDE 694 Query: 738 IGRGTATLDGLSIAWATIEYL--HETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 +GRGT+T DGLSIAW+ IEY+ E +C+ L ATH+HELT L ++ N ++ V Sbjct: 695 VGRGTSTYDGLSIAWSVIEYICKSENLKCKTLFATHYHELTKLEGEIEGLKNYSIAVKKV 754 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 N+ IIFL K+I AD SYGI+V K+AGLP V+ RA +ILK E+ ++ Sbjct: 755 NDDIIFLRKIISKGADESYGIEVAKIAGLPEEVLVRAREILKDLEEAKPKTAENTEDKKT 814 Query: 856 EIQTKESKNNLSKNDKLFVEK------IKCLNLDEMSPLTALKTLY 895 I +E K + + D ++E+ +K + +M+P+ + LY Sbjct: 815 NIVKEEPKKDSYQIDFNYLERESILKELKDTEIMDMNPIECMNKLY 860 >gi|34499116|ref|NP_903331.1| DNA mismatch repair protein MutS [Chromobacterium violaceum ATCC 12472] gi|44888170|sp|Q7NRW7|MUTS_CHRVO RecName: Full=DNA mismatch repair protein mutS gi|34104967|gb|AAQ61323.1| DNA mismatch repair protein [Chromobacterium violaceum ATCC 12472] Length = 873 Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust. Identities = 316/881 (35%), Positives = 472/881 (53%), Gaps = 53/881 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ +K + D L+FYRMGDFYELF++DA ASR L ITLT RG G I M G Sbjct: 34 TPMMQQYLALKREHADKLLFYRMGDFYELFYEDAEKASRLLDITLTARGASAGNPIKMAG 93 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H A Y+ +L+K+G +AI EQI P AK V R VVR+VTPGTLT+ LL Sbjct: 94 IPYHAAEGYLARLVKMGESVAIAEQIGDPALAK-----GPVERKVVRIVTPGTLTDAALL 148 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 N ++AV ++ +AW+ +++G FKI ++ + L S++ R+ P E++ + Sbjct: 149 DDKRDNLVLAVNMVKGVLGLAWLSLASGEFKIMQASVEDLASELERLKPAELVIPDDTGL 208 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAAAAAI 264 A FE + P FD S+ + ++ + FG+ + V AA A + Sbjct: 209 AA-----FEGISTPKKKLPPWQFDIESSKLALTRHFGTRDLAGFGADTLPVAVGAAGALL 263 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 Y+K TQ VN I ED + +D+A R NLE+ T+ G +L +D T Sbjct: 264 EYVKSTQGVNPAHISALSVEDAGELIRMDAATRRNLELTETIRGEASPTLASLLDTCATS 323 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 G RL + P+ + K+ R ++ + + L D+ R SR+ + Sbjct: 324 MGSRLLGHWLHHPMRNHGKLARRHGAVRALLSR---YQDVHAELDQVSDIERITSRVALR 380 Query: 385 RGEPKDIAVIRDGIR--SGINILNLFLKNDLPEELRGAVEKLKKLP--QSLEKTLSSMLS 440 P+D++ +RD + SG+ L L ++L EL G LP ++K L++ + Sbjct: 381 SARPRDLSALRDSLTALSGVKALAASLDSELLNELAGV------LPTESPVQKMLAAAIL 434 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 + TF RDGG + DG LDE R+++ + L+ + E T I LK++ N G Sbjct: 435 PEPATFLRDGGVINDGFSPVLDELRAIQTDCGDFLLKLEAREKERTGITTLKVEFNRVHG 494 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 ++IEV+ + + + D + RQT+ N R+ T EL + E++ A + AL +E + Sbjct: 495 FYIEVSKAQSDKVPDD------YRRRQTLKNAERYITPELKEFEDKALTAQDRALALEKQ 548 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 +E L + + L +Q +A +D+ A A A NY P + GRHP Sbjct: 549 LYEALLDQLAPHIAELKLIAQAVAALDVLSAFAQRAAIGNYAEPQFVPEPKLDIVAGRHP 608 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE +++ FIAND LS KL L+TGPNMGGKST++RQNALI ++A +G Sbjct: 609 VVEAEVER-----FIANDTRLSAER-----KLLLITGPNMGGKSTYMRQNALITLLAHVG 658 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA A IG +D++F+R+G++D+LA GRSTFMVEM ETA+ILN A+ S V++DE+GR Sbjct: 659 SFVPADSAVIGPIDRIFTRIGASDDLAGGRSTFMVEMTETANILNNASEHSLVLMDEVGR 718 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GT+T DGL++AWA L E NR L ATH+ ELT L+ N L + + I+ Sbjct: 719 GTSTFDGLALAWAIARALIEKNRAYTLFATHYFELTTLAGEYPAVANVHLSAVEHKDRIV 778 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI--- 857 FLH V G A SYG+ V +LAG+P VI A L E NQ R+ P++ Sbjct: 779 FLHHVEDGPASQSYGLAVAQLAGVPAKVIRDARRHLAELE-----NQSAARV-QPDLFSA 832 Query: 858 QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 S+ LS +++++ ++ D +SP AL+ LY +K Sbjct: 833 PAPASEPELSPA----MDRLQEIDPDVLSPRQALEILYELK 869 >gi|301155231|emb|CBW14696.1| methyl-directed mismatch repair protein [Haemophilus parainfluenzae T3T1] Length = 860 Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust. Identities = 311/892 (34%), Positives = 492/892 (55%), Gaps = 44/892 (4%) Query: 16 IDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK 75 ++L++N + TPMM+QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG+ Sbjct: 1 MNLQDNFEQHTPMMQQYLKLKAENPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGQ 60 Query: 76 HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVT 135 G IPM GVP H Y+ KL+++G +AICEQ+ P +K V R +VR+VT Sbjct: 61 SAGNPIPMAGVPYHAVEGYLAKLVQLGEPVAICEQVGDPATSK-----GPVERKIVRIVT 115 Query: 136 PGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSN-HDRLISDIMRIDP 194 PGT++++ LL N ++AV + + ++ +A +D+++G F++ + + L +++ RI+P Sbjct: 116 PGTVSDEALLPERQDNLIVAVYQEKEKFGLATLDMTSGRFQLCEPHSKEALQAELQRINP 175 Query: 195 REIIFSE--KELSHAE-YKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS 251 E+++ E E++ E YK L +P F+ + S + + + FG Sbjct: 176 VELLYCEDFAEMAIIEPYKGLRR--------RPIWEFELRTAISELNRQFGTKDLCAFG- 226 Query: 252 FSQVEKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL 306 VEK+ AA + Y K+TQ + P I + +D+A R NLE+ + L Sbjct: 227 ---VEKSPLGLAAAGCLLQYAKETQRASLPHIQSISVIQNNDNIQLDAATRRNLELTQNL 283 Query: 307 SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK 366 +G E +L +D +T G RL I P+ + + R +I I+ L + +Q Sbjct: 284 AGGTENTLASVLDKCVTPMGSRLLKRWIHQPIRQTDILLKRQKTIGEIIEQD-LYHELQP 342 Query: 367 ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK 426 L+ D+ R L+R+ + P+D+ +R + I +L L L ++ Sbjct: 343 YLQQVGDMERILARVALRSARPRDLTRLRTALEQIEPIKSLIHTKTL-SNLTALSAQIDD 401 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 +E L + + P RDGG + +G +A LDE R+L + + + +L+ + E T Sbjct: 402 FSAQIE-LLQKAIIETPPLLIRDGGVIAEGYNAELDEWRTLSAGATQYLENLEQREREST 460 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 I LKI N GY+I+++ A ++ ++ RQT+ N R+ EL + E++ Sbjct: 461 GIDTLKIGFNAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKEYEDK 514 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 + + +AL +E + ++ L + ++ L AS ++ +D+ + LA A+ NY P Sbjct: 515 VLKSKGAALALEKQLYDELFDLLLPHLGQLQLASLALSELDVLVNLAERAETLNYVAPQF 574 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 + +++GRHP+VE+ LK PFIAN +L+ L ++TGPNMGGKST+ Sbjct: 575 SDEIGVKIENGRHPVVEQVLK----DPFIANPVNLN-----QQRHLLIITGPNMGGKSTY 625 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ ALI +MA +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+Q Sbjct: 626 MRQTALITLMAYIGSFVPADSAVIGQIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQ 685 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT+QS V++DEIGRGT+T DGLS+AWA E+L + R L ATH+ ELT L + ++ Sbjct: 686 ATSQSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKTRSLTLFATHYFELTALPEQIEGIT 745 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN 846 N L + N I F+H V G A SYG+ V LAG+P +VI A L EKL N Sbjct: 746 NIHLDALEHNNTIAFMHAVQDGAASKSYGLAVAALAGVPQSVIKLAKQKLHQLEKLSAQN 805 Query: 847 QKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + + + E I+ L+ DE+SP AL LY +K Sbjct: 806 GDQQIQHLRALNQHQGELAFEAEPDALREAIEQLDPDELSPKQALAYLYQLK 857 >gi|294634768|ref|ZP_06713297.1| DNA mismatch repair protein MutS [Edwardsiella tarda ATCC 23685] gi|291091827|gb|EFE24388.1| DNA mismatch repair protein MutS [Edwardsiella tarda ATCC 23685] Length = 852 Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust. Identities = 311/887 (35%), Positives = 486/887 (54%), Gaps = 48/887 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +N + TPMM+QY+ +K+ +PD L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 DNFDAHTPMMQQYLRLKAQHPDILLFYRMGDFYELFYDDARRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H +Y+ KL+++G AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGVPYHAVENYLAKLVQLGESAAICEQIGDPAT-----SKGPVERKVVRIVTPGTV 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL+ N L A+ + + A +DIS+G F+ + + + + +++ R +P E++ Sbjct: 120 SDEALLNERQDNLLAAIWQSANGFGYATLDISSGRFRAAEPQDAESMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 + E+ + A L E + +P F+ + ++ + + FG + + Sbjct: 180 YPEEFAAMA----LIEQRRGLR-RRPMWEFELETARQQLTLQFGTRDLSGFGVEQAPLAL 234 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA + Y K TQ P I E Q + +D+A R NLE+ + L+G +E +L Sbjct: 235 RAAGCLLQYAKDTQRTMLPHIRAITMERQQDGIIMDAATRRNLELTQNLAGGQENTLAAV 294 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D S+T G R+ + P+ D + R D+I PI+ + +Q +L+ D+ R Sbjct: 295 LDASVTAMGSRMLKRWLHMPIRDRQVLQQRQDAIAAL--QPIVAD-LQPLLRQVGDLERI 351 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLK--NDLPEELRGAVEKLKKLPQSLEKTL 435 L+RL + P+D+A +R + + L + L V + L + LE+ L Sbjct: 352 LARLALRSARPRDLARMRLAFQQLPAVQTLLAEQGGSALAPLAHQVGRFDALCELLERAL 411 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + P RDGG + G A LDE R+L + + + L+++ E+ + LK+ Sbjct: 412 V----ETPPVLVRDGGVIASGYHAELDEWRALAEGASDYLDRLEIREREKLGLDTLKVGF 467 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+I+V+ + ++ ++ RQT+ N R+ EL + E+++ + AL Sbjct: 468 NAVHGYYIQVSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSKGKAL 521 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E + ++ L + ++ L ++ +A +D+ +LA A+ Y RP + + + Sbjct: 522 ALEKQLYDELFDLLLPHLAELQQSAAALAELDVLSSLAERAERFAYVRPELVERSGIRID 581 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 +GRHP+VE+ LK+ PFIAN LS + ++ ++TGPNMGGKST++RQ ALIV+ Sbjct: 582 EGRHPVVERVLKE----PFIANPLHLS-----PARRMLVITGPNMGGKSTYMRQTALIVL 632 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +A +GS+VPA A IG VD++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V++ Sbjct: 633 LAHIGSFVPAERAVIGPVDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEHSLVLM 692 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + L+ +N L + Sbjct: 693 DEIGRGTSTYDGLSLAWACAESLASRIKAMTLFATHYFELTTLPEQLEGVYNVHLDALEH 752 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYH---HNQKDMRL 852 + I F+H V G A SYG+ V LAG+P VI RA L+ E L H+Q + R Sbjct: 753 GDTIAFMHSVQEGAASKSYGLAVAALAGVPRDVIKRARQKLRELELLSQQGSHSQAE-RA 811 Query: 853 YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 P + E L E + L+ D ++P AL LY +K Sbjct: 812 QLPLLAEVEPSPAL--------EALTTLDPDSLTPRQALDWLYRLKG 850 >gi|326423853|ref|NP_760485.2| DNA mismatch repair protein MutS [Vibrio vulnificus CMCP6] gi|32171452|sp|Q8DC53|MUTS_VIBVU RecName: Full=DNA mismatch repair protein mutS gi|319999224|gb|AAO10012.2| DNA mismatch repair protein MutS [Vibrio vulnificus CMCP6] Length = 853 Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust. Identities = 307/883 (34%), Positives = 482/883 (54%), Gaps = 44/883 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 + TPMM+QY+ +K+ NPD L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IP Sbjct: 5 QQHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKKASQLLDISLTKRGASAGEPIP 64 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H Y+ KL+++G +AICEQ+ P +K V R VVR+VTPGT+T++ Sbjct: 65 MAGVPFHAVEGYLAKLVQLGESVAICEQVGDPAT-----SKGPVERKVVRIVTPGTVTDE 119 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFK-ISTSNHDRLISDIMRIDPREIIFSE 201 LLS N + A+ ++ A +D+++G F+ + + + + +++ R PRE++F E Sbjct: 120 ALLSERLDNLIAAIYHHNGKFGYATLDVTSGRFQLVEPQSEEAMAAELQRTSPRELLFPE 179 Query: 202 KELSHAEYKSLFETLG-NVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 +++ + G N +P F+ ++ ++ + + FG + V A Sbjct: 180 ------DFEPVHLMTGRNGNRRRPVWEFELETAKQQLNQQFGTKDLVGFGVENAVLGLCA 233 Query: 261 AAA-ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A I Y+K TQ P I + ++ +D+A R NLE+ + L+G + +L +D Sbjct: 234 AGCLIQYVKDTQRTTLPHIRALTYDRQDDSVILDAATRRNLELTQNLAGGSDNTLAAVLD 293 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 T G R+ I P+ T RLD+I ++ L + I ++K D+ R L+ Sbjct: 294 RCATPMGSRMLKRWIHQPMRCITTREHRLDAIAE-LKEQALFSDIHPVVKQIGDIERILA 352 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 RL + P+D+A +R ++ + L N + L A + + + LE+ + Sbjct: 353 RLALRSARPRDLARLRHAMQQLPELAQTLSSLGNSHLKSLATAAAPMDDVCELLERAIK- 411 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 ++ P RDGG + +G A LDE R L D + + L+ + + I LK+ +NN Sbjct: 412 ---ENPPVVIRDGGVIAEGYSADLDEWRDLADGATGYLEKLEEEERDRHGIDTLKVGYNN 468 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 G++I+V+ + ++ ++ RQT+ N R+ EL + E+++ N+ + AL I Sbjct: 469 VHGFYIQVSRGQSHLVPP------HYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALAI 522 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + +E L + ++ L + +A +D+ LA A +YCRP + + G Sbjct: 523 EKQLWEELFDLLLPHLARLQELAAAVAQLDVLQNLAERADTLDYCRPNLTKDPVVHITAG 582 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE Q +S PFIAN +L+ + K+ ++TGPNMGGKST++RQ ALI +MA Sbjct: 583 RHPVVE----QVTSDPFIANPIELN-----SQRKMLIITGPNMGGKSTYMRQTALIALMA 633 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V++DE Sbjct: 634 HIGSYVPAESATIGSIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATANSLVLMDE 693 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGT+T DGLS+AWA+ +L L ATH+ ELT+L L N L + + Sbjct: 694 IGRGTSTYDGLSLAWASAHWLATQIGAMTLFATHYFELTELPNQLPHLANVHLDAVEHGD 753 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 I F+H V G A SYG+ V LAG+P TVI A L E L + P+ Sbjct: 754 SIAFMHAVQEGAASKSYGLAVAGLAGVPKTVIKNARQKLSQLELLSAEGSQ------PKA 807 Query: 858 QTKESKNNLS--KNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +T + N LS + + ++ D+++P AL+ LY +K Sbjct: 808 RTVDIANQLSLIPEPSEVEQALASIDPDDLTPRQALEALYRLK 850 >gi|190411091|gb|ACE78300.1| truncated MutS [Vibrio parahaemolyticus] Length = 848 Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust. Identities = 305/880 (34%), Positives = 487/880 (55%), Gaps = 44/880 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 + TPMM+QY+++K+ NP+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IP Sbjct: 5 QKHTPMMQQYLKLKAENPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGSSAGEPIP 64 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+T++ Sbjct: 65 MAGVPFHAVEGYLAKLVQLGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTVTDE 119 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSE 201 LLS N + A+ ++ A +D+++G F+++ + +++++ R PRE++F E Sbjct: 120 ALLSERLDNLIAAIYHHNGKFGYATLDVTSGRFQLTEPETEEAMMAELQRTAPRELLFPE 179 Query: 202 KELSHAEYKSLF-ETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTA 259 +++ ++ + N +P F+ ++ ++ + + FG + + A Sbjct: 180 ------DFEPVYLMSNRNGNRRRPVWEFELDTAKQQLNQQFGTRDLVGFGVEHASLGLCA 233 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A I Y+K TQ P I + ++ +D+A R NLEI + L+G + +L +D Sbjct: 234 AGCLIQYVKDTQRTALPHIRSLTFDRQDHSVILDAATRRNLEITQNLAGGTDNTLAAVLD 293 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G R+ + P+ +N RLD+I I++ L +Q LK D+ R L+ Sbjct: 294 HCSTPMGSRMLKRWLHQPMRCIDTLNNRLDAIGE-IKDQGLFTDLQPTLKQIGDIERILA 352 Query: 380 RLKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 RL + P+D+A +R ++ + L L + +L + ++ + LE+ + Sbjct: 353 RLALRSARPRDMARLRHAMQQLPELESLTASLTHPYLVKLAQYAAPIDEVCELLERAIK- 411 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 ++ P RDGG + +G + LDE R L D + + L+ + I LK+ +NN Sbjct: 412 ---ENPPVVIRDGGVIAEGYNEELDEWRKLADGATEYLEKLEADERDRHGIDTLKVGYNN 468 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 G++I+V+ + ++ ++ RQT+ N R+ EL + E+++ N+ + AL + Sbjct: 469 VHGFYIQVSRGQSHLVPP------HYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALAL 522 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + +E L + ++ E + N + ++ +D+ LA A +YCRP + ++ G Sbjct: 523 EKKLWEELFDLLMPHLEQMQNLASAVSQMDVLQNLAERADSLDYCRPTLVKDAGIHIQAG 582 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP VE Q +S PFIAN +LS S K+ ++TGPNMGGKST++RQ ALI +MA Sbjct: 583 RHPGVE----QVTSDPFIANPIELS-----PSRKMLIITGPNMGGKSTYMRQTALIALMA 633 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GSYVPA A +G +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V++DE Sbjct: 634 HIGSYVPAESAQVGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLVLMDE 693 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGT+T DGLS+AWA+ E+L L ATH+ ELT+L L N L + + Sbjct: 694 IGRGTSTYDGLSLAWASAEWLATQIGAMTLFATHYFELTELPNLLPNLANVHLDAVEHGD 753 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 I F+H V G A SYG+ V LAG+P TVI A L E+L + P Sbjct: 754 SIAFMHAVQEGAASKSYGLAVAGLAGVPKTVIKNARTKLSQLEQLGQASDS------PRP 807 Query: 858 QTKESKNNLS--KNDKLFVEKIKCLNLDEMSPLTALKTLY 895 T + N LS + + ++ D+++P AL+ LY Sbjct: 808 STVDVANQLSLIPEPSEVEQALSNIDPDDLTPRQALEELY 847 >gi|152997735|ref|YP_001342570.1| DNA mismatch repair protein MutS [Marinomonas sp. MWYL1] gi|189083158|sp|A6W1Q6|MUTS_MARMS RecName: Full=DNA mismatch repair protein mutS gi|150838659|gb|ABR72635.1| DNA mismatch repair protein MutS [Marinomonas sp. MWYL1] Length = 883 Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust. Identities = 326/901 (36%), Positives = 482/901 (53%), Gaps = 56/901 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY +KS +P+ L+FYRMGDFYELF+DDA ASR L ITLT RG G IPM G Sbjct: 10 TPMMRQYFGLKSQHPNQLLFYRMGDFYELFYDDAKRASRLLDITLTARGHSGGIPIPMAG 69 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H A +YI +L+++G + + EQ P +K V R + R+VTPGT++++ L Sbjct: 70 IPYHAAENYIARLVRMGESVVVAEQTGDPATSK-----GPVERQIARIVTPGTISDEAFL 124 Query: 146 SPTDSNYLMAVARIRTE----WAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFS 200 N L+++A + + +++D+++G F + H+ L S++ R+ PREI+ S Sbjct: 125 EEKRENLLLSLAHQSRKGLDIFGFSYLDMASGRFCLFEVDGHEALSSELQRLSPREILIS 184 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 E + A K L + + + FD+ S ++ ++ + FG + A+ Sbjct: 185 EDFPARATLK-LEKGISELGPWH----FDYESSYRQLIQQFSTKDLSGFGCEAMTAAIAS 239 Query: 261 AAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A A+ Y K TQ P I E ++ ID A R NLEI L+G +L++ +D Sbjct: 240 AGALLQYAKDTQRSALPHIQSIMVEHKDDSVLIDGATRRNLEIDINLTGGTSNTLVEVLD 299 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 T G RL + +P+ D +I R + QN N + LK D+ R LS Sbjct: 300 KCSTPMGSRLLKRWLHTPIRDLNEIQARQQVVAELQQNQS-YNAFEAPLKKVGDLERILS 358 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSL-EKTLSSM 438 R+ + P+D+ +R + + I N L N E L+ L+ L Q + +TL+ Sbjct: 359 RVALRSARPRDLLRLRFALEAAPEI-NGLLANATSERLQEL--NLRILAQPIITETLAKA 415 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 L ++ P+ RDGG G D LDE +L + +A ++ T I +LK+ N Sbjct: 416 LVENPPSVVRDGGIFAKGYDEELDELLALSTNATDFLAEMERSEKARTGISSLKVGFNRV 475 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IE+ S L D ++ +I RQT+ N RF T EL E++ +A + +L E Sbjct: 476 HGYYIEI-----SRLHSD-QAPVEYIRRQTLKNAERFITPELKAFEDKALSAKSKSLARE 529 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 E +E L + E L SQ +A +D+ A A ++ P + N + GR Sbjct: 530 KELYEALLEQLNEILGELQTTSQALAQLDVLNNFAERANALSFTCPELHNRGGIQIVGGR 589 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE + S+PF+ ND DL NDK S L ++TGPNMGGKST++RQ ALI ++A Sbjct: 590 HPVVESVI----SEPFVPNDLDL---NDKRS--LLMITGPNMGGKSTYMRQIALITLLAH 640 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 G +VPA A I +VD++F+R+GS+D+LA GRSTFMVEM ETA+ILN A+ S V++DE+ Sbjct: 641 TGCFVPAESASISVVDRIFTRMGSSDDLAGGRSTFMVEMTETANILNNASKNSLVLMDEV 700 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGLS+AWA ++YL +C L ATH+ ELT L+ L+ N L ++ + Sbjct: 701 GRGTSTFDGLSLAWAAVDYLANKLKCYVLFATHYFELTTLADQLENAANVHLTATEYEDE 760 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL-----------YHHNQ 847 I+FLHKV G A SYG+QV +LAG+P VI A LK E + N Sbjct: 761 IVFLHKVHEGPASQSYGLQVAQLAGVPRDVIGHAKQKLKELEVVTGIDLDTKTIETKANS 820 Query: 848 KDMRLYYPEIQTKESKNNLSKND-KLFVE--------KIKCLNLDEMSPLTALKTLYAVK 898 ++ E KESKN +F + ++ L+LD M+PL A+ LY +K Sbjct: 821 SSIKAKTKEHLVKESKNGYQPQQVDMFAQAEQNALKNALEELDLDNMTPLEAISALYKLK 880 Query: 899 A 899 + Sbjct: 881 S 881 >gi|84390123|ref|ZP_00991385.1| DNA mismatch repair protein [Vibrio splendidus 12B01] gi|84376777|gb|EAP93652.1| DNA mismatch repair protein [Vibrio splendidus 12B01] Length = 861 Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust. Identities = 307/884 (34%), Positives = 490/884 (55%), Gaps = 48/884 (5%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 + TPMM+QY+++K+ NP+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IPM Sbjct: 14 AHTPMMQQYLKLKAENPEILLFYRMGDFYELFYDDAKKASQLLDISLTKRGSSNGEPIPM 73 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H Y+ KL+++G +AICEQI +P +K V R VVR+VTPGT+T++ Sbjct: 74 AGVPYHAVEGYLAKLVQLGESVAICEQIGNPATSK-----GPVDRAVVRIVTPGTVTDEA 128 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEK 202 LLS N + ++ ++ A +DI++G F++ + + +++ R PRE++F E Sbjct: 129 LLSERVDNLIASIYHHNGKFGYATLDITSGRFQLCEPETEEAMAAELQRTSPRELLFPED 188 Query: 203 ELSHAEYKSLFETLGNVAVA-----QPNVFFDHSISESRIADYYNITTVDTFGSFS-QVE 256 FE + +A +P F+ ++ ++ + + FG S ++ Sbjct: 189 ----------FEPVNLMASRNGNRRRPVWEFELDTAKQQLNQQFGTRDLVGFGVESAKLG 238 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 AA I Y+K TQ P I + ++ +D+A R NLEI + LSG + +L + Sbjct: 239 LCAAGCLIQYVKDTQRTALPHIRSLTMDKQDHSVILDAATRRNLEITQNLSGGTDNTLSE 298 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D++ T G R+ + P+ + + ++ RLD+I +++ L +Q LK D+ R Sbjct: 299 VLDHTATAMGSRMLKRWLHQPMRNISALDQRLDAIGE-MKDLALFTELQPTLKQIGDIER 357 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKT 434 L+RL + P+D+A +R + + LK+ +L + ++ + LE+ Sbjct: 358 ILARLALRSARPRDMARLRQAMEYLPELAETLTQLKHPYLTQLAQYASPVDEVSELLERA 417 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + ++ P RDGG + +G +A LDE R L + + L+ + E I LK+ Sbjct: 418 IK----ENPPVVIRDGGVIAEGYNAELDEWRDLAAGATEFLDKLEQEERERHGIDTLKVG 473 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +NN G+FI+V+ + ++ ++ RQT+ N R+ EL + E+++ ++ + A Sbjct: 474 YNNVHGFFIQVSRGQSHLVPP------HYVRRQTLKNAERYIIPELKEHEDKVLSSKSKA 527 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L IE + +E L + ++ E L N + ++ +D+ LA A +YCRP + S + Sbjct: 528 LAIEKKLWEELFDLLLPYLERLQNIASSVSQLDVLQNLAERADTLDYCRPTMTESAGVQI 587 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 + GRHP+VE+ + + PFIAN DL ND+ K+ ++TGPNMGGKST++RQ ALI Sbjct: 588 QAGRHPVVEQVMDE----PFIANPIDL---NDQR--KMLIITGPNMGGKSTYMRQTALIA 638 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 +MA +G YVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V+ Sbjct: 639 LMAHIGCYVPAESATIGSIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATPNSLVL 698 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA+ E+L L ATH+ ELT+L + N L + Sbjct: 699 MDEIGRGTSTYDGLSLAWASAEWLANQINAMTLFATHYFELTELPNQIPTLANVHLDAVE 758 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 + I F+H V G A SYG+ V LAG+P VI A L E L D Sbjct: 759 HGDSIAFMHAVQEGAASKSYGLAVAGLAGVPKAVIKNARAKLTQLEAL----SIDSPTSK 814 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P ++ +L + + ++ D+++P AL+ LY +K Sbjct: 815 PSGVDIANQLSLIPEPSEVEQALANVDPDDLTPRQALEELYRLK 858 >gi|73540813|ref|YP_295333.1| DNA mismatch repair protein [Ralstonia eutropha JMP134] gi|72118226|gb|AAZ60489.1| DNA mismatch repair protein MutS [Ralstonia eutropha JMP134] Length = 922 Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust. Identities = 327/923 (35%), Positives = 491/923 (53%), Gaps = 63/923 (6%) Query: 6 SSPQKLYSEQIDLEENL-----KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDAL 60 ++P K E+I+L + + + TPMM+QY+ IK+ +PD+L+FYRMGDFYELF DDA Sbjct: 23 ATPDKGMQEKIELNQEVAKPLAEKHTPMMQQYLRIKADHPDTLLFYRMGDFYELFHDDAE 82 Query: 61 LASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR 120 A+R L ITLT RG G I M G+P H+A+ Y+ KL+K+G +AICEQI P Sbjct: 83 KAARLLDITLTARGSSNGVPIRMAGIPFHSADQYLAKLVKLGESVAICEQIGDPA----- 137 Query: 121 GNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAI-----AWIDISTGIF 175 +K V R VVR+VTPGTLT+ LL +LMAV + T + AW+++++G Sbjct: 138 ASKGPVERKVVRIVTPGTLTDASLLPDKSDTFLMAVHQQTTRRGVSKTGLAWLNLASGEL 197 Query: 176 KISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQ---PNVFFDHSI 232 ++ +L + RI P E+++++ L VA A+ P FD Sbjct: 198 RLMECEAAQLAREFERIRPAELLYADGI-----------DLPAVACARTRLPEWHFDQDA 246 Query: 233 SESRIADYYNITTVDTFGSFSQVEKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLF 291 R+ + + +++ FG AA A+ +Y TQ + + + E + Sbjct: 247 GTRRLLEQLGVASLEPFGCAGLGAAIGAAGALLNYAATTQGQSLRHVRDIKVERESEFVG 306 Query: 292 IDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSI 351 +DSA R NLE+ TL G +L +D T G R + PL D R +I Sbjct: 307 LDSATRRNLELTETLRGGESPTLFSLLDTCATAMGSRALRHWLHHPLRDPALPRARQQAI 366 Query: 352 NFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN 411 I + I + ++ L+ DV R SRL + P+D++ +RD +R+ ++ Sbjct: 367 GVLIDHGI--DDLRSALRKLADVERITSRLALLSARPRDLSSLRDTLRALPHVRACLQAE 424 Query: 412 DLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQS 471 L V +L +PQ+ L S ++++ T RDGG + G DA LDE R + + Sbjct: 425 PDSSLLSLTVAELA-VPQACLDLLISAVAEEPATVVRDGGVIARGYDAELDELRDISENC 483 Query: 472 KRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSN 531 + + L+ + T I NL++++N G++IEVT+ A + D + RQT+ N Sbjct: 484 GQFLVDLESRERTRTGIANLRVEYNRVHGFYIEVTNGQADKVPDD------YRRRQTLKN 537 Query: 532 LTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIA 591 R+ T EL E++ +A + AL E + +++L A++ L + +A +D+ + Sbjct: 538 AERYITPELKAFEDKALSAQDRALAREKQLYDVLLQALLPHIGELQRVAGALARLDVLAS 597 Query: 592 LAILAKEQNYCRP--IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNS 649 LA A+ ++ P + DN + + GRHP+VE L +S PFIANDC L+ + Sbjct: 598 LAERAQTLDWSCPERVGDNVIDIV--QGRHPVVEGQLAAESV-PFIANDCQLN-----EA 649 Query: 650 GKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASG 709 KL L+TGPNMGGKSTF+RQ ALIV++A +G+YVPA A IG VD++F+R+G+AD+LA G Sbjct: 650 RKLLLITGPNMGGKSTFMRQTALIVLLACVGAYVPARRAVIGPVDRIFTRIGAADDLAGG 709 Query: 710 RSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLA 769 RSTFMVEM E A+IL+ AT S V++DEIGRGT+T DGL++AWA +L NR L A Sbjct: 710 RSTFMVEMTEAAAILHHATPASLVLMDEIGRGTSTFDGLALAWAIARHLLSHNRSHTLFA 769 Query: 770 THFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVI 829 TH+ ELT L + + N L + +GI+FLH V G A SYG+QV +LAG+P VI Sbjct: 770 THYFELTQLPQEFPQAANVHLSAVEHGDGIVFLHAVQDGPASQSYGLQVAQLAGVPQPVI 829 Query: 830 SRAYDILKTFEKLYHHN----QKDMRLYYPEIQTKESKNNLSKNDKLFV----------E 875 A L E+ Q D+ P T + +S + V + Sbjct: 830 RAARKHLAWLEQQSADATPTPQLDLFAPPPHPDTSDDDEPVSIGKPVQVALLPEQAAVLD 889 Query: 876 KIKCLNLDEMSPLTALKTLYAVK 898 + L+ D ++P AL LY +K Sbjct: 890 ALSDLDPDSLTPRAALDALYRLK 912 >gi|269101864|ref|ZP_06154561.1| DNA mismatch repair protein MutS [Photobacterium damselae subsp. damselae CIP 102761] gi|268161762|gb|EEZ40258.1| DNA mismatch repair protein MutS [Photobacterium damselae subsp. damselae CIP 102761] Length = 898 Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust. Identities = 314/895 (35%), Positives = 495/895 (55%), Gaps = 49/895 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 + L+ TPMM+QY++IK+ NPD L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 35 QGLEKHTPMMQQYLKIKAENPDVLLFYRMGDFYELFYDDAKQASKLLDISLTKRGASNGQ 94 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H A Y+ KL++ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 95 PIPMAGVPHHAAEGYLAKLVQQGVSVAICEQIGDPATSK-----GPVERQVVRIVTPGTV 149 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSN-HDRLISDIMRIDPREII 198 +++ LL+ N + A+ + A +DI++G F ++ N + + +++ R P E++ Sbjct: 150 SDEALLNERRDNLIAAIFAYNDGFGYATLDITSGRFMLTEPNTEEEMQAELQRTMPAELL 209 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 + E Y L E+ +P F+ S + ++ + + FG ++ Sbjct: 210 YPED----FTYLHLIESFKG-KRRRPVWEFELSTARQQLTMQFGTRDLVGFGVEHAERGL 264 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA + Y+K TQ P I + + +D+A R NLE+ + L+G + +L Sbjct: 265 CAAGCLLQYVKDTQRTALPHIRAITLDTKDHAVILDAATRRNLELTQNLAGGFDNTLASV 324 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D + T G RL + P+ D ++N R ++I F ++ L + + +L+ D+ R Sbjct: 325 LDQTATPMGSRLLKRWLHQPIRDPKQLNGRYNAIGAF-KDSGLFSELAGVLRHMGDLERI 383 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEKLKKLPQSLEKTL 435 L+RL + P+D+A +R +++ + +L + P EL + ++ Q LE + Sbjct: 384 LARLALRSARPRDLARMRIALQNLPELADLLAEVSDPRIGELAALAAPMDEVCQLLEHAI 443 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 ++ P RDGG L G +A LDE R L D + + + L+ + E I +LK+ Sbjct: 444 I----ENPPVIIRDGGVLAPGYNAELDEWRDLADGATKYLEELEARERERHDIDSLKVGF 499 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N G++I+V+ + ++ +I RQT+ N R+ EL + E+++ N+ + AL Sbjct: 500 NQVHGFYIQVSRGQSHLVPS------HYIRRQTLKNAERYIIPELKEHEDKVLNSKSKAL 553 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E + ++ L + ++ E L N + ++ +D+ LA A NYCRP + + T ++ Sbjct: 554 ALEKKLWDELFDLLMPNLEQLQNMANSLSELDVLANLAERADTLNYCRPQLMDETGIEIE 613 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ L S+PFIAN L+ +D+ ++ ++TGPNMGGKST++RQ ALI + Sbjct: 614 AGRHPVVEQVL----SEPFIANPISLN--HDR---RMLIITGPNMGGKSTYMRQTALIAL 664 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +A +GS+VPA IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V++ Sbjct: 665 LAHVGSFVPADSLKIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATQHSLVLM 724 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA+ E+L + L ATH+ ELT+L + N L + Sbjct: 725 DEIGRGTSTYDGLSLAWASAEWLADKIAAMTLFATHYFELTELPTLMSGLANVHLDAVEH 784 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 + I F+H V G A SYG+ V LAG+P +VI RA L+ E H D+ P Sbjct: 785 GDEIAFMHAVQEGAASKSYGLAVASLAGVPKSVIKRAKIKLQQLEASGHQQASDV----P 840 Query: 856 EIQT-----------KESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 T +E + +L E + LN D M+P AL LY +KA Sbjct: 841 NPTTTDAPTSAKAVRQEHQLSLIPESSEVEEAVARLNPDNMTPREALDELYRLKA 895 >gi|331001789|ref|ZP_08325311.1| DNA mismatch repair protein MutS [Lachnospiraceae oral taxon 107 str. F0167] gi|330412763|gb|EGG92146.1| DNA mismatch repair protein MutS [Lachnospiraceae oral taxon 107 str. F0167] Length = 882 Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust. Identities = 309/892 (34%), Positives = 506/892 (56%), Gaps = 39/892 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM +Y+E K+ +PD ++FYR+GDFYE+FFDDA+ +R L +TLT + L + PMCG Sbjct: 4 SPMMSKYLETKNEHPDCILFYRLGDFYEMFFDDAIEVARELELTLTGKDCGLKERAPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A YI +L++ GH++AI EQ+E P AK LV+R VVR+VTPGT+T +L Sbjct: 64 VPYHAAETYINRLVQNGHKVAIAEQMEDPKLAK-----GLVKREVVRIVTPGTITSTGVL 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREIIFSEK-E 203 + +NY++++ I + +A DISTG F ++ R L +I + P EII + E Sbjct: 119 ADDRNNYIISIFYIDERFGLAICDISTGDFFVTELVSIRELFDEIQKYQPTEIICNHAFE 178 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT-AAAA 262 +S L + + N +F+ + ++ +++++ G ++ T ++ A Sbjct: 179 ISGISLDELRKKYNITITSLDNSYFNEKAGIDILKRHFAVSSIEALGLSEFLDATISSGA 238 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYS 321 + Y+ + Q + I + +D+A+R NLE++ T+ ++ SLL +D + Sbjct: 239 MLRYLHEMQKSSCAQIVGISAYKNGDYMIVDTASRRNLELVETMREKKKSGSLLGVLDKT 298 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G R+ + PL + KI R D++ I +++ L D+ R +SR+ Sbjct: 299 NTAMGARMLRSFLEQPLVNREKIIGRQDAVAELFDRYIDREELREYLNPVYDLERLMSRV 358 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 +D+ + ++ I+ + LK +E++ E L +L + + + +++ Sbjct: 359 VTKSANTRDLLSLSASMKM-ISPIKDVLKTFEAKEIKRTDENLDRL-EDIIDIIDRAINE 416 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 D P ++G + G +A +D+ R + + K +ASL+ + E+T IKNLKIK N GY Sbjct: 417 DSPLSLKEGNIINTGYNAEIDKLRQAKTEGKNWLASLESEEKEKTGIKNLKIKFNKVFGY 476 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 + EVT+S +++ D F+ +QT++N R+TT +L DLEN I A + +E E Sbjct: 477 YFEVTNSFKNMVP------DYFVRKQTLTNAERYTTDKLKDLENIILGAEDKLNSLEYEI 530 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 F + I + ++++ IA ID +LA +A NY RP I+ + +KDGRHP+ Sbjct: 531 FVEVREEIANNVNRIQSSAKSIAYIDAICSLATVAYNNNYARPEINTTGIIDIKDGRHPV 590 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE LK S FI ND L D+N ++ ++TGPNM GKST++RQ ALI +MAQ+GS Sbjct: 591 VETMLKDDS---FIVNDTYL----DQNKKRMSIITGPNMAGKSTYMRQTALICMMAQIGS 643 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA A + + D++F+RVG++D+LASG+STFMVEM E A+IL AT S VILDEIGRG Sbjct: 644 FVPAKKASLCVCDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATRNSLVILDEIGRG 703 Query: 742 TATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 T+T DGL+IAWA +E++ + L ATH+HEL++L +L +N + V ++ + I Sbjct: 704 TSTFDGLAIAWAVVEHISNVKLIGAKTLFATHYHELSELEGTLPGVNNYCISVKENGDNI 763 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL-YHHNQKDMRLYYPEIQ 858 +FL K+I G AD SYGIQV KLAG+P +V +RA ++++ +++ P Sbjct: 764 VFLRKIITGGADKSYGIQVAKLAGVPESVTNRAKELIEELSGADIATKAREIAEATPTAS 823 Query: 859 TKESKNNLSK------------NDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ +++ N+ +++I +++ M+P+ AL TLYA++ Sbjct: 824 KRKPVKKMNEVEAGQLSLFDAVNNDTIIKEISDIDITTMTPMDALNTLYALQ 875 >gi|260891463|ref|ZP_05902726.1| DNA mismatch repair protein MutS [Leptotrichia hofstadii F0254] gi|260858846|gb|EEX73346.1| DNA mismatch repair protein MutS [Leptotrichia hofstadii F0254] Length = 894 Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust. Identities = 311/923 (33%), Positives = 523/923 (56%), Gaps = 85/923 (9%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 + TP+M+QY EIKS DS++F+R+GDFYE+FF+DA+ ASR LG+TLT R K DIP+ Sbjct: 2 ADTPLMKQYKEIKSNFEDSILFFRLGDFYEMFFEDAVKASRELGLTLTSRNKEKNVDIPL 61 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H+A+ YI KL+ G+++AICEQ E P AK +V+R VV+++TPGT+ + + Sbjct: 62 AGVPFHSADSYITKLVSKGYKVAICEQTEDPKMAK-----GIVKREVVKIITPGTVVDVE 116 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD----RLISDIMRIDPREIIF 199 L +NYLM++ +I + IA+IDI+TG FK++ D +L ++I +I+P+E++ Sbjct: 117 ALDAKSNNYLMSILKIENKLGIAYIDITTGEFKVTEVEKDDDFVKLFNEINKIEPKEVLV 176 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVF-FDHSISESR--IADYYNITTVDTFGSFSQVE 256 +E Y + E L + +V F + + +S + DY+ I +++++G + Sbjct: 177 TEDF-----YGEIKEKLDDFLQKNDSVVTFVNKVRDSAKYLMDYFEIVSLESYGIKDKKG 231 Query: 257 KTAAAAAISYIKKT-QMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ--- 312 AAA T Q+ ++ T+ E +I + I++ NLE+L+ RE+ Sbjct: 232 IIGAAAMALDYAATMQVEHELTVEKIEFVNISNYAEINAITSRNLELLKN---QREKTIY 288 Query: 313 -SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 SLL +D T G RL I +PL + KI R + + +FI N ++ +++ L++ Sbjct: 289 GSLLWVLDECKTSMGTRLLKRFINNPLLNVDKIRKRQEDVQYFIDNILIREDLREKLENI 348 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSL 431 D+ R L ++ G KD+ ++ I+S + I+ + D +++ + L + Sbjct: 349 YDLERLLGKIIFGSENGKDLTALKKTIKSAVEIMKILGNTDFFKDIDANI-----LFECY 403 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 K + +++D P R+GG ++ G +A LDE R++ + K + ++ + E T I+N+ Sbjct: 404 -KIIDDSINEDAPFSVREGGIIKSGYNAELDEIRNIMNSGKDFLLDIEQREREATGIRNM 462 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 KIK N GYFIE+T ++ ++ + +I +QT+SN R+ T EL E+ I N+ Sbjct: 463 KIKFNKVFGYFIEITKANLDMVP------EHYIRKQTLSNSERYITPELKKYEDTIINSK 516 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 +E F+ +S + E + L ++ +A ID+ ++ A+ A E +Y +P ++ + Sbjct: 517 AKIEDLEYHLFKEISGKLKEHRKILSELAERLAYIDVMVSFAVSAIENDYAKPEMNEEYS 576 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 F ++ GRHP+VEK + + +++ND + +K S +LTGPNM GKST+++Q A Sbjct: 577 FEIEGGRHPVVEKLIGRTD---YVSND---TVFTEKES--FVVLTGPNMSGKSTYMKQIA 628 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LI IMAQ+GS+VPA A++ I+DK +R+G++D++ +G+STFMVEM E ++ILN AT +S Sbjct: 629 LISIMAQIGSFVPAKKANLSIIDKYLTRIGASDDILTGQSTFMVEMSEVSNILNNATEKS 688 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 +ILDE+GRGT+T DG+SIA A Y+H+ + + ATH+HELTDL N ++ Sbjct: 689 LIILDEVGRGTSTTDGVSIATAISMYIHDKIGAKTVFATHYHELTDLENKFAHIVNYRIE 748 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK---------- 841 V + ++FL ++ G AD SYGI+V KLAGLP ++ + ILK E+ Sbjct: 749 VDEKQGKVMFLRNIVKGGADKSYGIEVAKLAGLPKEILVESKKILKRLEQKKELIERTVD 808 Query: 842 -----LYHHNQK-------------------DMRLYYPE--IQTKESKNNLSKNDKLFVE 875 L+ N + + +Y E +Q +E K +L + V Sbjct: 809 VHQLSLFGGNSELENDFQEFENESANDFENTESNQFYTEKLVQVEEEKESLLE----IVN 864 Query: 876 KIKCLNLDEMSPLTALKTLYAVK 898 KI+ +++ ++P+ A+K L+ +K Sbjct: 865 KIENYDVNNVTPMDAIKFLFELK 887 >gi|37524723|ref|NP_928067.1| DNA mismatch repair protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|44888166|sp|Q7N8K0|MUTS_PHOLL RecName: Full=DNA mismatch repair protein mutS gi|36784148|emb|CAE13017.1| DNA mismatch repair protein MutS [Photorhabdus luminescens subsp. laumondii TTO1] Length = 851 Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust. Identities = 308/883 (34%), Positives = 489/883 (55%), Gaps = 43/883 (4%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E + TPMM+QY+ +K+ +PD L+FYRMGDFYELF+DDA A++ L I+LTKRG+ G Sbjct: 5 ETFDTHTPMMQQYLRLKAQHPDILLFYRMGDFYELFYDDAKKAAKLLDISLTKRGQSAGN 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H +Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGVPHHAVENYLAKLVQLGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTV 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTS-NHDRLISDIMRIDPREII 198 T++ LL N L A+ + A +D+++G F+IS + + +++ R P E++ Sbjct: 120 TDEALLQERQDNLLAAIWHDNQGFGYATLDVTSGRFQISEMIELETIAAELQRSRPVELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 + E E+ +L E + +P F+ ++ ++ + + FG + + Sbjct: 180 YPES----FEHMALIENFHGLR-RRPLWEFELDTAKQQLNLQFGTRDLVGFGVDKATLAL 234 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA + Y+K TQ P I E Q T+ +D+A R NLE+ + LSGS + +L Sbjct: 235 RAAGCLLQYVKDTQRTALPHIRGITMERQQDTVIMDAATRRNLELTQNLSGSTDNTLASV 294 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D +T G R+ + +P+ D + R +I + + + P L D+ R Sbjct: 295 LDLCVTPMGSRMLKRWLHAPVRDRQILENRQQAIATLQEIGLELQPF---LLQIGDLERV 351 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKTL 435 L+RL + P+D+A +R + +I + +D P ++L+ + + +L + LEK + Sbjct: 352 LARLALRSARPRDLARMRHAFQQLPDIHQVMDSSDSPYIKQLQKNIGRFDELQELLEKAI 411 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + P RDGG + G ++ LDE R+L D + + L+++ E+ + LK+ Sbjct: 412 V----ETPPVLIRDGGVIAPGYNSELDEWRTLADGASNYLEQLEIREREKLGLDTLKVGF 467 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+I+V+ + ++ ++ RQT+ N R+ EL + E+++ + +L Sbjct: 468 NGVHGYYIQVSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSKGKSL 521 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 IE +E L + ++ L +++ +A +D+ LA A+ NY P + + + Sbjct: 522 AIEKALYEELFDLLLPHLAELQTSAEALAELDVLANLAERAETLNYICPTLSDKPGIQIT 581 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ L++ PFI+N LS + +L ++TGPNMGGKST++RQ ALI + Sbjct: 582 GGRHPVVEQVLRE----PFISNPLSLS-----SQRRLLIITGPNMGGKSTYMRQAALITL 632 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +A +GS+VPA A IG VD++F+RVG++D+LASGRSTFMVEM ETA+IL+ AT QS V++ Sbjct: 633 LAYIGSFVPAEKAVIGPVDRIFTRVGASDDLASGRSTFMVEMTETANILHNATEQSLVLM 692 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + L+ N L + Sbjct: 693 DEIGRGTSTYDGLSLAWACAENLANRIKAMTLFATHYFELTTLPEKLEGVVNIHLDAVEH 752 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 + I F+H V G A SYG+ V LAG+P VI RA LK E L +H + P Sbjct: 753 GDTIAFMHSVQEGAASKSYGLAVASLAGVPREVIKRARQKLKELESLSNHATAS-HVDTP 811 Query: 856 EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ L++ VE ++ LN D ++P AL+ +Y +K Sbjct: 812 QLAL------LTEETSPAVEALENLNPDSLTPRQALEWIYRLK 848 >gi|149374515|ref|ZP_01892289.1| DNA mismatch repair protein [Marinobacter algicola DG893] gi|149361218|gb|EDM49668.1| DNA mismatch repair protein [Marinobacter algicola DG893] Length = 877 Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust. Identities = 311/896 (34%), Positives = 484/896 (54%), Gaps = 44/896 (4%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 + +L TPMMRQY++IK +P+ LVFYRMGDFYELF++DA A+ + ITLT RG+ G Sbjct: 5 QTDLSHHTPMMRQYLKIKGEHPNELVFYRMGDFYELFYEDAKKAAELMDITLTARGQSGG 64 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 IPM G+P H+A YI +L++ G IAICEQI P +K V R VVR+VTPGT Sbjct: 65 NPIPMAGIPYHSAEGYIARLVRAGQSIAICEQIGDPAT-----SKGPVERKVVRIVTPGT 119 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREI 197 L++D L N L+A+ R ++ A +DIS+G F +S + + L ++ R+ P EI Sbjct: 120 LSDDAFLEDRRDNLLVAIFSHREQFGFASLDISSGRFTVSELDDLEGLQGELQRLRPAEI 179 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVE 256 + SE Y+ + + + P F+ + I + + FG + Sbjct: 180 LISED----FPYQDVLDGYTGIRRQGP-WLFESDTARRVITQQLQVRDLTGFGCEDLTLA 234 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 AA + Y K+TQ P I RE + + +D+ +R NLEI L G + +L Sbjct: 235 ICAAGCLLQYAKETQRTALPHIRKLSRERREEAVILDATSRRNLEIDTNLMGGTQHTLAW 294 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D + T GGR + PL D T + R +++ + P+ +LKS D+ R Sbjct: 295 VMDRTATAMGGRQLRRWLNRPLRDITVVEQRQQAVSALLDG-FHYEPVHDLLKSIGDIER 353 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 L+R+ + P+D+A +RD S + L L + + + P+ L L Sbjct: 354 ILARVALRSARPRDLARLRDAFLS-LPDLQRALTPVSSHHVVKLATIISEYPE-LSDLLE 411 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + D+ P RDGG +R+G D LDE R++ + + + + ++ + E T I LK+ +N Sbjct: 412 RAIIDNPPVVIRDGGVIREGFDDELDELRNISENAGQFLLDVETRERERTGISTLKVGYN 471 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+IE+T + + D +I RQT+ N RF T EL + E++ +A + +L Sbjct: 472 RVHGYYIEITRAQSGQAPVD------YIRRQTLKNAERFITPELKEFEDKALSAKSRSLA 525 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 E ++ + + + L +A+Q +A +D+ A A + P ++ F +++ Sbjct: 526 REKALYDEVLETVAAELAPLQDAAQALAELDVLSNFAERATSLRFNAPEFSDTPGFDIEE 585 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE+ L S P++ ND + ++ ++TGPNMGGKST++RQ ALI ++ Sbjct: 586 GRHPVVEQLL----SDPYVPNDLLMD-----QQRRMLVITGPNMGGKSTYMRQAALIALL 636 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A GSYVPA+ IG +D++F+R+GS+D++A GRSTFMVEM ETA+IL+ AT S V++D Sbjct: 637 AYTGSYVPANRVVIGPLDRIFTRMGSSDDIAGGRSTFMVEMTETANILHNATEYSLVLMD 696 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 E+GRGT+T DGLS+AWAT E+L + RC L ATH+ ELT L+ L+ N L ++ + Sbjct: 697 EVGRGTSTFDGLSLAWATAEHLAKHIRCYTLFATHYFELTQLADDLEHAVNVHLTATEHD 756 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE---KLYHHNQKDMRLY 853 + I+FLH V G A SYG+QV KLAG+P VI A L E + + + Sbjct: 757 DTIVFLHNVHDGPASQSYGLQVAKLAGVPQDVIRNAKAQLSHLEGGAAPARPSADETAMA 816 Query: 854 YPEIQTKESKNNLSK---NDKLFV--------EKIKCLNLDEMSPLTALKTLYAVK 898 E++ ++ +S+ +F E + L++D ++P AL LY +K Sbjct: 817 PAELEKQKRSARVSEPVMQADMFASLEPSKVEECLADLDVDGLTPRDALNRLYELK 872 >gi|315303084|ref|ZP_07873783.1| DNA mismatch repair protein MutS [Listeria ivanovii FSL F6-596] gi|313628545|gb|EFR96979.1| DNA mismatch repair protein MutS [Listeria ivanovii FSL F6-596] Length = 860 Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust. Identities = 315/895 (35%), Positives = 502/895 (56%), Gaps = 59/895 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+EIK D+ +F+R+GDFYE+FF+DAL AS+ L ITLT R + IPMCG Sbjct: 5 TPMIKQYLEIKDKYQDAFLFFRLGDFYEMFFEDALNASQILEITLTGREGGTKEKIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A+ YI LI+ G+++AICEQ+E P + K +V+R VV+L++PGT+ +++ L Sbjct: 65 VPYHSASGYIDTLIEKGYKVAICEQVEDP-----KTTKGMVKREVVQLISPGTVMDERGL 119 Query: 146 SPTDSNYLMAVARIR-TEWAIAWIDISTGIFK--ISTSNHDRLISDIMRIDPREIIFSEK 202 ++NY+ A+ E+ A+ D+STG K I ++ DRLI+++ + RE++ S Sbjct: 120 KAKENNYIAALYCFEGKEYGFAYSDLSTGELKSTIIDASEDRLINELTTLSTRELVVSST 179 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 E E L NV Q + F SI E N V S S EK A Sbjct: 180 EK---------EVLSNVMKEQLGLTF--SIHEENAIPTENEKLVTRHMSLS--EKLAIGK 226 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDYS 321 + Y+K+TQ + + + S + +D ++ NLE+ ++ G R+ +LL +D + Sbjct: 227 LLHYLKETQKRDLGHLQQAVHYETSSYMKMDYYSKRNLELAESIRGKGRQGTLLWLLDNT 286 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSI-----NFFIQNPILINPIQKILKSSPDVPR 376 T GGR+ + I PL D KI R + + +FF + ++ N LK+ D+ R Sbjct: 287 QTAMGGRMLKQWIDRPLIDRKKIIERQNDVSELMAHFFERLELVEN-----LKNVYDLER 341 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEKLKKLPQSLEKT 434 R+ G +D+ +R+ + I L + P EL ++ ++L + LE+ Sbjct: 342 LAGRVAYGNVNARDLIQLRNSLYQIPRIRATLLSMNTPSLTELANQLDPCEELTEKLEEA 401 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + D P R+GG ++DG ++ LD R K IA L+ K E T IK +K+ Sbjct: 402 IM----DSAPISIREGGIIKDGYNSQLDTYRDASRNGKTWIAELERKERELTGIKTMKVG 457 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N GY+IEVT ++ +L + R+ +QT++N R+ T EL + E I +A + Sbjct: 458 FNRVFGYYIEVTRANTHLL-----PEGRYERKQTLTNAERYITPELKEKEKLILDAEEKS 512 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E + F + + + + L ++ ++ ID + A ++++ ++ RP + + V Sbjct: 513 MELEYQLFTEVRETVKDYIDRLQKLAKSVSEIDCLQSFADVSEKNHFIRPTLSEDGSLHV 572 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 K GRHP+VEK + QS ++ANDCDL D+N ++ L+TGPNM GKST++RQ AL+ Sbjct: 573 KQGRHPVVEKVMGAQS---YVANDCDL----DENR-EILLITGPNMSGKSTYMRQVALMA 624 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 I AQ+G +VPA A + I D++F+R+G+AD+L +G+STFMVEM+E + + AT S ++ Sbjct: 625 ICAQVGCFVPAEEAILPIFDQIFTRIGAADDLIAGQSTFMVEMLEARNAIVHATKDSLIL 684 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 DEIGRGTAT DG+++A A IEY+HE + L +TH+HELTDL K L+ N + + Sbjct: 685 FDEIGRGTATYDGMALAQAIIEYIHENVHAKTLFSTHYHELTDLEKELRGLQNIHVSAVE 744 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE----KLYHHNQKDM 850 N ++FLHK+ G AD SYGI V +LA LP ++I RA IL+ E K+ ++ Sbjct: 745 ENGKVVFLHKIKEGPADKSYGIHVAELAELPKSLIERASRILEQLENDDKKIIISSEMQP 804 Query: 851 RLYYPEIQTK----ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWT 901 + EIQ E + S + +++I LN+ +M+P+ A+ LY +++ T Sbjct: 805 EEIHEEIQLSMFPVEPERKTSSKEAKLIKEIAALNIMQMTPMDAMNKLYELQSKT 859 >gi|15895112|ref|NP_348461.1| DNA mismatch repair protein MutS [Clostridium acetobutylicum ATCC 824] gi|44888237|sp|Q97I19|MUTS_CLOAB RecName: Full=DNA mismatch repair protein mutS gi|15024812|gb|AAK79801.1|AE007692_9 Mismatch repair protein MutS, ATPase [Clostridium acetobutylicum ATCC 824] Length = 869 Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust. Identities = 310/886 (34%), Positives = 504/886 (56%), Gaps = 41/886 (4%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S +PMM+QY+ IK + D ++F+R+GDFYE+FF+DA +ASR L + LT + L K PM Sbjct: 2 SISPMMQQYLSIKENHKDCILFFRVGDFYEMFFEDAEVASRELELVLTGKDCGLEKRAPM 61 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVP H Y KL+ G+++A+ EQ+E P AK +V+R+V++++TPGT T+ Sbjct: 62 CGVPHHAYAIYASKLVSKGYKVAVAEQLEDPSLAK-----GIVKRDVIKVLTPGTYTDSS 116 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREIIFSE 201 L T +NY+M++ A+ + DISTG F ++ + D ++++I + P+E++ E Sbjct: 117 FLEDTKNNYIMSLFIHDKVSAMCFADISTGEFNLTETELDFEIILNEISKFSPKELVLQE 176 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 L + E V N +F +E+ A + N V+ ++ K+ A Sbjct: 177 N-LDDKLVDKIRERFDVVYNRFSNEYFKEHRNENLKAQFSNYAEVN----MTEGLKSCAN 231 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDY 320 I YI TQ I ++ +I L ID +R NLE+ TL S++ SLL +D Sbjct: 232 GLIKYIIDTQKTALTHIDELQKYEIVDFLSIDINSRRNLELTETLKDKSKKGSLLWVLDK 291 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGR + I PL D KIN RLD++ + N ++++LK D+ R + Sbjct: 292 TSTAMGGRQIRKWIERPLIDDEKINLRLDAVEEMLTNVSYNEDLKELLKQVYDIERLAGK 351 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 + K++ +R I I L ++L + A++ L + + L +++ Sbjct: 352 ISSKSVNAKEMISLRGSIEKLPAIKKLIKNFNSELLVNMENALDDLGDIYKLLYESI--- 408 Query: 439 LSDDLPTFK-RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 +D P+ ++G +++G + +DE R + K+ IASL+ E T IK+LK+ +N Sbjct: 409 --NDNPSLSIKEGNIIKEGYNKDIDELRLAKSHGKQWIASLENTEREVTGIKSLKVSYNK 466 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IE+T S+ +++ + R+I +QT++N R+ T EL ++E +I A +L+ Sbjct: 467 VFGYYIEITKSNLNLV-----PEGRYIRKQTLTNSERYITPELKEMEEKILGAEEKLVLL 521 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E F + I ++ + + ++++++ +D + A +A+E NYC+P+I ++K+G Sbjct: 522 EYNVFCEIRERIEKEIDRIKGSAKILSELDCICSFADVARENNYCKPVIKRDGTLVIKEG 581 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VEK + +S F+AND ++ N N + L+TGPNM GKST++RQ LIV+MA Sbjct: 582 RHPVVEKVI---ASGNFVANDTVIN--NSDNV--MMLITGPNMAGKSTYMRQVGLIVLMA 634 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+G +VPAS A I I DK+F+R+G++D+L +G+STFMVEM E + IL AT S ++LDE Sbjct: 635 QIGCFVPASAAEISICDKIFTRIGASDDLNAGKSTFMVEMWEVSHILKNATKNSLILLDE 694 Query: 738 IGRGTATLDGLSIAWATIEYL--HETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 +GRGT+T DGLSIAW+ IEY+ E +C+ L ATH+HELT L ++ N ++ V Sbjct: 695 VGRGTSTYDGLSIAWSVIEYICKSENLKCKTLFATHYHELTKLEGEIEGLKNYSIAVKKV 754 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 N+ IIFL K+I AD SYGI+V K+AGLP V+ RA +ILK E+ ++ Sbjct: 755 NDDIIFLRKIISKGADESYGIEVAKIAGLPEEVLVRAREILKDLEEAKPKTAENTEDKKT 814 Query: 856 EIQTKESKNNLSKNDKLFVEK------IKCLNLDEMSPLTALKTLY 895 I +E K + + D ++E+ +K + +M+P+ + LY Sbjct: 815 NIVKEEPKKDSYQIDFNYLERESILKELKDTEIMDMNPIECMNKLY 860 >gi|320155344|ref|YP_004187723.1| DNA mismatch repair protein MutS [Vibrio vulnificus MO6-24/O] gi|319930656|gb|ADV85520.1| DNA mismatch repair protein MutS [Vibrio vulnificus MO6-24/O] Length = 853 Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust. Identities = 307/883 (34%), Positives = 482/883 (54%), Gaps = 44/883 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 + TPMM+QY+ +K+ NPD L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IP Sbjct: 5 QQHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKKASQLLDISLTKRGASAGEPIP 64 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H Y+ KL+++G +AICEQ+ P +K V R VVR+VTPGT+T++ Sbjct: 65 MAGVPFHAVEGYLAKLVQLGESVAICEQVGDPAT-----SKGPVERKVVRIVTPGTVTDE 119 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFK-ISTSNHDRLISDIMRIDPREIIFSE 201 LLS N + A+ ++ A +D+++G F+ + + + + +++ R PRE++F E Sbjct: 120 ALLSERLDNLIAAIYHHNGKFGYATLDVTSGRFQLVEPQSEEAMAAELQRTSPRELLFPE 179 Query: 202 KELSHAEYKSLFETLG-NVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 +++ + G N +P F+ ++ ++ + + FG + V A Sbjct: 180 ------DFEPVHLMTGRNGNRRRPVWEFELETAKQQLNQQFGTKDLVGFGVENAVLGLCA 233 Query: 261 AAA-ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A I Y+K TQ P I + ++ +D+A R NLE+ + L+G + +L +D Sbjct: 234 AGCLIQYVKDTQRTALPHIRALTYDRQDDSVILDAATRRNLELTQNLAGGSDNTLAAVLD 293 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 T G R+ I P+ T RLD+I ++ L + I ++K D+ R L+ Sbjct: 294 RCATPMGSRMLKRWIHQPMRCITTREHRLDAIAE-LKEQALFSDIHPVVKQIGDIERILA 352 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 RL + P+D+A +R ++ + L N + L A + + + LE+ + Sbjct: 353 RLALRSARPRDLARLRHAMQQLPELAQTLSSLGNSHLKSLATAAAPMDDVCELLERAIK- 411 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 ++ P RDGG + +G A LDE R L D + + L+ + + I LK+ +NN Sbjct: 412 ---ENPPVVIRDGGVIAEGYSADLDEWRDLADGATGYLEKLEEEERDRHGIDTLKVGYNN 468 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 G++I+V+ + ++ ++ RQT+ N R+ EL + E+++ N+ + AL I Sbjct: 469 VHGFYIQVSRGQSHLVPP------HYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALAI 522 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + +E L + ++ L + +A +D+ LA A +YCRP + + G Sbjct: 523 EKQLWEELFDLLLPHLARLQELASAVAQLDVLQNLAERADTLDYCRPNLTKDPVVHITAG 582 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE Q +S PFIAN +L+ + K+ ++TGPNMGGKST++RQ ALI +MA Sbjct: 583 RHPVVE----QVTSDPFIANPIELN-----SQRKMLIITGPNMGGKSTYMRQTALIALMA 633 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V++DE Sbjct: 634 HIGSYVPAESATIGSIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATANSLVLMDE 693 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGT+T DGLS+AWA+ +L L ATH+ ELT+L L N L + + Sbjct: 694 IGRGTSTYDGLSLAWASAHWLATQIGAMTLFATHYFELTELPNQLPHLANVHLDAVEHGD 753 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 I F+H V G A SYG+ V LAG+P TVI A L E L + P+ Sbjct: 754 SIAFMHAVQEGAASKSYGLAVAGLAGVPKTVIKNARQKLSQLELLSAEGSQ------PKA 807 Query: 858 QTKESKNNLS--KNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +T + N LS + + ++ D+++P AL+ LY +K Sbjct: 808 RTVDIANQLSLIPEPSEVEQALASIDPDDLTPRQALEALYRLK 850 >gi|104783162|ref|YP_609660.1| DNA mismatch repair protein MutS [Pseudomonas entomophila L48] gi|122402199|sp|Q1I659|MUTS_PSEE4 RecName: Full=DNA mismatch repair protein mutS gi|95112149|emb|CAK16876.1| methyl-directed mismatch repair, recognize exocyclic adducts of guanosine [Pseudomonas entomophila L48] Length = 857 Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust. Identities = 311/895 (34%), Positives = 479/895 (53%), Gaps = 60/895 (6%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L + TPMM+QY ++K +PD L+FYRMGDFYE+F++DA A++ L ITLT RG+ G+ Sbjct: 3 DLSAHTPMMQQYWKLKHQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQS 62 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCG+P H+ Y+ KL+K+G + ICEQI P +K V R VVR++TPGT++ Sbjct: 63 IPMCGIPFHSLEGYLAKLVKLGESVVICEQIGDPAT-----SKGPVERQVVRIITPGTIS 117 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIF 199 ++ LL N + A+ + +A +DI++G F + + L++++ RI+P E++ Sbjct: 118 DEALLDERRDNLIAALLGDERLFGLAVLDITSGNFTVQEIKGWENLLAELERINPVELLI 177 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVF------FDHSISESRIADYYNITTVDTFGSFS 253 + G A +P FD + + + + FG Sbjct: 178 PDDWPQ-----------GLPAEKRPGARRRAPWDFDRDTARKSLCQQFATQDLKGFGCDK 226 Query: 254 QVEKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 AA + Y K+TQ P + E + T+ +D+A+R NLE+ L+G R+ Sbjct: 227 LTLAIGAAGCLLGYAKETQRTALPHLRSLRHERMDDTVILDAASRRNLELDINLAGGRDN 286 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 +L ID T RL + PL D + R DSI + +Q LK Sbjct: 287 TLQSVIDRCQTAMASRLLTRWLNRPLRDLKVLKARQDSIRCLLDG-YRFEKLQPQLKEIG 345 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE 432 D+ R L+R+ + P+D+A +RD + + + N + + P R A + L Sbjct: 346 DIERILARIGLRNARPRDLARLRDALGALPELQNAMAELEAPHLARLAA--ITGTYPELA 403 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 L + D+ P RDGG L+ G D+ LDE ++ + + + + L+ + T + NLK Sbjct: 404 GLLERAIIDNPPAVIRDGGVLKTGYDSELDELLAMSENAGQFLIDLEAREKARTGLANLK 463 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 + +N GY+IE+ + A D +I RQT+ RF T EL E++ +A + Sbjct: 464 VGYNRVHGYYIELPTKQAEQAPGD------YIRRQTLKGAERFITPELKAFEDKALSAKS 517 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 AL E ++ L +I L +++ +A +D+ LA A + P + Sbjct: 518 RALAREKMLYDALLETLIGHLAPLQDSAAALAELDVLSNLAERALNLDLNCPSFVDEPCL 577 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 ++ GRHP+VE+ L + PF+AND L NS ++ ++TGPNMGGKST++RQ AL Sbjct: 578 RIEQGRHPVVEQVL----TTPFVANDLGLD-----NSTRMLIITGPNMGGKSTYMRQTAL 628 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 IV+MA +GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT+ S Sbjct: 629 IVLMAHIGSFVPAARCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDCSL 688 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 V++DE+GRGT+T DGLS+AWA E L + R L ATH+ ELT L +S N L Sbjct: 689 VLMDEVGRGTSTFDGLSLAWAAAERLAQL-RAYTLFATHYFELTVLPESEPLVANVHLNA 747 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--KLYHHNQKDM 850 ++ NE I+FLH V+PG A SYG+ V +LAG+P VI RA + L E L H Sbjct: 748 TEHNERIVFLHHVLPGPASQSYGLAVAQLAGVPAVVIQRAREHLGRLETTSLPHET---- 803 Query: 851 RLYYPEIQTKESKNNLSKNDKLF-------VEKIKCLNLDEMSPLTALKTLYAVK 898 P + + ++ LF +EK+ L+LD+M+P A++TLY +K Sbjct: 804 ----PIASKSKGEPDVPHQSDLFASLPHPAIEKLGKLDLDDMTPRQAIETLYQLK 854 >gi|298242775|ref|ZP_06966582.1| DNA mismatch repair protein MutS [Ktedonobacter racemifer DSM 44963] gi|297555829|gb|EFH89693.1| DNA mismatch repair protein MutS [Ktedonobacter racemifer DSM 44963] Length = 936 Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust. Identities = 315/930 (33%), Positives = 513/930 (55%), Gaps = 75/930 (8%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S +P+ QY+ IK NPD+++F+RMGDFYE+F DDA + +R L I LT+R G+ PM Sbjct: 20 SQSPVRAQYLNIKRQNPDAILFFRMGDFYEMFDDDAEIVARELEIALTRRDFGRGQKSPM 79 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G+P H A+ YI +L+ G+R+AICEQ+ P +K LV R VVR+VTPGT+ + Sbjct: 80 AGIPHHAADGYIARLVGKGYRVAICEQVSDPALSK-----GLVEREVVRIVTPGTIIDPS 134 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI---STSNHDRLIS-DIMRIDPREI-- 197 +L+ +N+L AV R IA+IDI+TG F + +T + I +I R+ P E+ Sbjct: 135 MLAAKRNNFLAAVVPGRGAIGIAYIDITTGEFAVTQFATPEPELAIQQEISRVSPAEVLV 194 Query: 198 -----------------IFSEKEL--------SHAE-------------YKSLFETLGNV 219 + SEK++ ++AE Y L + L + Sbjct: 195 EAHYSRLGNRKKRWLATVMSEKQVTKLGSNGNANAEIPDLEAEEDEEEDYAPLVKLLSGL 254 Query: 220 A---VAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAISYIKKTQMVNK 275 A + +F + R+ + +++++ FG + + AA A +SY+++TQ Sbjct: 255 AGHVTPYDSRYFAEDDARHRLLKQFEVSSLEGFGCAHLPLAVRAAGAVLSYVQETQKGLL 314 Query: 276 PTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQSLLKTIDYSITGAGGRLFAERI 334 + E + + +D R NLE+ T S + SLL +D + + GGRL I Sbjct: 315 QHLIALETYSTNNFMTLDPYTRRNLELFETGRLNSVKGSLLWVLDKTHSPMGGRLLRRWI 374 Query: 335 ASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVI 394 PL D + R +I+ + + +L + + LK + D+ R ++R++ P+D+ + Sbjct: 375 GQPLLDIPTLQLRQQTISELLTDTLLQARLGEALKRAGDLERLINRVRQRIANPRDLVAL 434 Query: 395 RDGIRSGINI---LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGG 451 G+ + + L+ + P +R V++L + +E + + ++ P +GG Sbjct: 435 ATGLHAAAEVRTCLDETASENAPSLVR-LVDRLAENDDIIE-LIEKAIIEEPPVSINEGG 492 Query: 452 FLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSAS 511 +R G A LD+ + ++ I L+ + + T I NL++ N GYFIE+T+++ + Sbjct: 493 IIRAGFSAELDKLKEASQNGRQWITELEQRERKRTGISNLRVGFNKAYGYFIEITNANLN 552 Query: 512 VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF-EILSNAII 570 + +I RQT++N R+ T +L + E I NA + +E E F ++ S+ I Sbjct: 553 ------RAPTEYIRRQTLTNSERYITPDLKEYETLILNAQDRINKMENEFFTQLRSDIAI 606 Query: 571 EQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQS 630 +E + + + IA ID+ ++LA +A + +YCRP ++ + GRHP+VE+ Q+ Sbjct: 607 HAAERILDTAHAIAEIDVFLSLAEVAAKSDYCRPQLNEDDTIHIVAGRHPVVEQA---QT 663 Query: 631 SKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHI 690 PFI ND D+S + ++ ++TGPNM GKST+LRQ ALI +MAQ+GSYVPA A I Sbjct: 664 DTPFIPNDTDIS----NHEAQIAIITGPNMAGKSTYLRQVALITLMAQIGSYVPAESATI 719 Query: 691 GIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSI 750 GIVD++F+R+G+ D+LA+G+STFMVEM+ETA+IL+ AT +S +ILDEIGRGT+T DGL+I Sbjct: 720 GIVDRIFTRIGAQDDLATGQSTFMVEMVETANILHHATPRSLLILDEIGRGTSTYDGLAI 779 Query: 751 AWATIEYLHETNRC--RGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPG 808 A A +EYLH RC R ATH+HEL ++SK L R + V++ + +IFL K++PG Sbjct: 780 ARAIVEYLHNNKRCGARTFFATHYHELVEVSKLLPRIRCLNVAVAEEDGKVIFLRKIVPG 839 Query: 809 IADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLSK 868 AD SYGI V +LAG+P V+ RA +IL E+ + + + L+ Sbjct: 840 GADRSYGIHVAQLAGIPRPVLHRAEEILAELERQGDAKARRKAMRDMAMPAAWQMTLLAS 899 Query: 869 NDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++++K + +DE++P+ A+ LY ++ Sbjct: 900 EPHPLIDELKTMKVDELTPIEAISKLYELQ 929 >gi|254433851|ref|ZP_05047359.1| DNA mismatch repair protein MutS [Nitrosococcus oceani AFC27] gi|207090184|gb|EDZ67455.1| DNA mismatch repair protein MutS [Nitrosococcus oceani AFC27] Length = 851 Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust. Identities = 316/878 (35%), Positives = 483/878 (55%), Gaps = 43/878 (4%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY+ IK+ P++L+ YRMGDFYELF+DDA AS L I LT RG+ G+ IPM G+P Sbjct: 1 MMQQYLRIKAEYPNTLLLYRMGDFYELFYDDAQRASELLDIALTSRGRSAGEPIPMAGIP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H + Y+ +L++ G +AICEQI +P +K V R VVR++TPGT+TE+ LL Sbjct: 61 YHALDSYLARLVRQGESVAICEQIGNP-----AASKGPVERQVVRIITPGTVTEEALLEA 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSEKELSH 206 N L A+ + + A +D+ +G F I ++ S++ RI P E++ SE +L+ Sbjct: 116 RRDNLLAALQKEGDVFGFAVLDLCSGRFNILEVASESAATSELARIRPAELLVSE-DLAL 174 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA--- 263 S E V P +FD ++ ++ + + FG + KTA AAA Sbjct: 175 ILVDSKTEA---VVRPLPPWYFDRESAQRQLCRQFGTQDLAGFGC--EEMKTAIAAAGCL 229 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDYSI 322 + Y++ TQ P I + E ++++ +D + R NLE+ +LSG S +L+ +D++ Sbjct: 230 LHYVQDTQRTQFPHIHALQVERQETSIILDPSTRRNLELEESLSGDSGRNTLIAVLDHTA 289 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G RL + PL D T + R ++ ++ L + +Q +L+ D+ R LSR+ Sbjct: 290 TAMGSRLLRRYLHRPLRDQTLLKQRQQALATLLEGG-LSDVLQTLLRGIGDIERILSRVA 348 Query: 383 IGRGEPKDIAVIRD--GIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + P+D+ R G+ I L L D L+ E L P +L + L + Sbjct: 349 LRSARPRDLVQFRQALGLLPKIQESLLQLNRD-SLLLQSLQEDLGPFP-NLHELLQRAIC 406 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 ++ P RDGG + G D+ LDE R L + + + L+ + E TKI LK+ +N G Sbjct: 407 ENPPVLIRDGGVIALGFDSELDELRHLSGNAGQFLVKLEQRERERTKIPTLKVGYNKVHG 466 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y++E+T + A D +I RQT+ R+ T EL E+++ +A AL E Sbjct: 467 YYLEITRAQAHQAPPD------YIRRQTLKGAERYITPELKGFEDQVLSARERALAREKA 520 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 +E L +E +L + +A +D+ LA AK Y P++ + ++ GRHP Sbjct: 521 LYEELLEQFMEPLPALRACANALAELDVLHNLAERAKTLEYVAPLLSDQPGIFIERGRHP 580 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE+TL+ PF+ ND L + ++ ++TGPNMGGKST++RQ ALIV++A +G Sbjct: 581 VVEQTLE----DPFVPNDLTL-----HEARRMLIITGPNMGGKSTYMRQTALIVLLAHIG 631 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA A IG +D++F+R+G+AD+LA GRSTFMVEM ETA+IL+ AT S V+LDE+GR Sbjct: 632 SFVPARRAVIGPIDRIFTRIGAADDLAGGRSTFMVEMTETANILHNATEHSLVLLDEVGR 691 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GT+T DGLS+AWA + +L R L ATH+ ELT L + L N L ++ E I+ Sbjct: 692 GTSTFDGLSLAWAVVSHLANKVRSLTLFATHYFELTTLPECLPGVVNLHLTATEHKEHIV 751 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 FLH V G A SYG+QV LAG+P +I++A L E + QK + P++ Sbjct: 752 FLHAVKEGPASQSYGLQVAALAGVPQEIIAQARQQLMELEN--NTWQKSINGGGPQLDLL 809 Query: 861 ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 D V+ ++ L+ DE++P AL+ LY +K Sbjct: 810 A-----PPADHPAVQILQDLDPDELTPRQALEKLYELK 842 >gi|85058509|ref|YP_454211.1| DNA mismatch repair protein [Sodalis glossinidius str. 'morsitans'] gi|123520023|sp|Q2NVL9|MUTS_SODGM RecName: Full=DNA mismatch repair protein mutS gi|84779029|dbj|BAE73806.1| DNA mismatch repair protein MutS [Sodalis glossinidius str. 'morsitans'] Length = 854 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 316/898 (35%), Positives = 488/898 (54%), Gaps = 70/898 (7%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +NL S TPMM+QY+++K+ +PD L+FYRMGDFYELF+DDA AS+ + I+LTKRG G+ Sbjct: 5 KNLDSHTPMMQQYLKLKAQHPDILLFYRMGDFYELFYDDAKRASQLMDISLTKRGASAGQ 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H +Y+ KL+ +G +AICEQI P K V R VVR+VTPGTL Sbjct: 65 PIPMAGVPYHAVENYLAKLVALGESVAICEQIGDPAT-----TKGPVERRVVRIVTPGTL 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL+ N L A+ + + A +DI++G F +S ++ + + +++ R +P E++ Sbjct: 120 SDEALLNERQDNLLAALWQAPQGFGYATLDITSGRFLVSEPADREAMAAELQRTNPAELL 179 Query: 199 FSE--KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 + E +++ E++ +P F+ + ++ + ++ FG +Q+ Sbjct: 180 YPETLQDMKLIEHR-------RGQRRRPLWEFELDTARQQLTLQFGTRDLNGFGIERAQL 232 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA + Y K TQ + P I E Q + +D+A R NLE+ + LSG E +L Sbjct: 233 ALRAAGCLLQYAKDTQRTSLPHIRAVTLELQQDGIVMDAATRRNLELTQNLSGGGENTLA 292 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D ++T G R+ + P D T + R SI + + +Q +L+ D+ Sbjct: 293 DVLDRTVTPMGSRMLKRWLHMPTRDITTLTYRQQSIRALQDH---VAELQPLLRQVGDLE 349 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK-- 433 R L+RL + P+D+A +R I L P LPQ L++ Sbjct: 350 RVLARLALRSARPRDLARMRYAFTQLPAIQALLCGQSEP-----------YLPQLLDRVG 398 Query: 434 ---TLSSMLSDDL----PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 TL +L+ + P RDGG + G A LDE R L + + L+L+ E+T Sbjct: 399 EFETLRDLLARAIIEAPPVLVRDGGVIAPGYHAELDEWRGLAAGATDYLDRLELREREKT 458 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 ++ LK+ N GYFI+++ + ++ ++ RQT+ N R+ EL + E++ Sbjct: 459 GLETLKVGFNAVHGYFIQLSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDK 512 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 + + + AL +E ++ L + ++ +L ++ +A +D+ LA A+ Y P I Sbjct: 513 VLTSKSKALALEKALYDELFDLLLPHLAALQQSATALAELDVLSNLAERAETLRYVCPTI 572 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 D + GRHP+VE L S+PFIAN LS ++ ++ ++TGPNMGGKST+ Sbjct: 573 DARQGIHISGGRHPVVEHVL----SEPFIANPLTLS-----DARRMLIITGPNMGGKSTY 623 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ ALIV++A +GS+VPA A IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ Sbjct: 624 MRQTALIVLLAYIGSFVPADEATIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHN 683 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT+QS V++DEIGRGT+T DGLS+AWA+ E L + L ATH+ ELT L + ++ Sbjct: 684 ATHQSLVLMDEIGRGTSTYDGLSLAWASAESLAGRIKAMTLFATHYFELTTLPEKMEGVV 743 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH- 845 N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E L Sbjct: 744 NVHLDAVEHGDTIAFMHSVQEGAASKSYGLSVAALAGVPREVIKRARQKLRELETLSTGA 803 Query: 846 -----NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + L PE Q VE ++ L+ D +SP AL+ LY +K Sbjct: 804 AAGSVDGSQLSLLQPEEQPVAPA----------VEALENLDPDSLSPRQALEWLYRLK 851 >gi|313157731|gb|EFR57142.1| DNA mismatch repair protein MutS [Alistipes sp. HGB5] Length = 902 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 310/905 (34%), Positives = 503/905 (55%), Gaps = 57/905 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M+QY IK+++PD+++ +R+GDFYE F +DA+ AS LGITLT+R + + G Sbjct: 24 TPLMKQYYSIKAVHPDAILLFRVGDFYETFGEDAIKASGILGITLTRRANGSATYVELAG 83 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KL++ G R+AICEQ+E P + + LV+R V+ LVTPG + D +L Sbjct: 84 FPYHAIDTYLPKLVRAGERVAICEQLEDPKQVR-----GLVKRGVIELVTPGVVLGDNIL 138 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKI---STSNHDRLISDIMRIDPREIIFS-- 200 + ++ +L +V R +A++DISTG F + S S D+LIS++ P+E+I+ Sbjct: 139 ANKENAFLASVYFGRQTTGVAFLDISTGEFYVAEGSESYIDKLISNLA---PKEVIYQRG 195 Query: 201 -EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 E S A L+ + V F ++ ++ + ++ FG + Sbjct: 196 YEDRFSDAFGSKLYTYRLDEWV------FSEEVNREKLCKQFGTRSLKGFGVDHFTSGLS 249 Query: 260 AAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKT 317 AA AI Y++ T+ + I R D + +++D NLE+ + +G+RE+ S Sbjct: 250 AAGAILYYLEFTEHRDIAHITSISRIDQEDYVWVDKFTIRNLELFSS-NGAREKCSFADV 308 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 ID ++T GGRL IA P+ D KI RLD + F+++ L + +++ + D+ R Sbjct: 309 IDRTLTPMGGRLLKRWIAMPIKDPVKIGERLDVVEKFVRDADLADVVREQVALVGDMERI 368 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 SR+ R P+++ +++ + + + +L L++ +L ++ L ++ Sbjct: 369 ASRIAAARVTPRELVQLKNSLFA-VELLKAALESTDDAQLHALAGQIDLLEGVRDRIARE 427 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + D L + GG + DG D LD+ R + K +A +Q + +E T I +LKI +NN Sbjct: 428 IYPDPLNNQIQKGGVIADGVDPELDDLRRIALHGKDYLARIQQRESEATGIPSLKISYNN 487 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IEV ++ + + +I +QT++N R+ T EL + E +I A L+I Sbjct: 488 VFGYYIEVRNAHKE------KVPETWIRKQTLANAERYITEELKEYEEKILGAEEKMLVI 541 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + + I SL + V+A ID + A LA E+ Y RP++D+ ++ G Sbjct: 542 EQRIYADIIAHISRSLSSLLRDAAVVARIDCLQSFARLACERRYVRPVLDDGKLIDIRQG 601 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP++E L + ++ ND L D ++ ++TGPNM GKS LRQ ALI++MA Sbjct: 602 RHPVIETLLP--VGEEYVPNDVML----DDKEQQIMMITGPNMSGKSALLRQTALIILMA 655 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 QMGS+VPA AHIG+VDK+F+RVG++DN++ G STFMVEM+E+ASILN +++S V+LDE Sbjct: 656 QMGSFVPAKSAHIGVVDKIFTRVGASDNISQGESTFMVEMLESASILNNISDRSIVLLDE 715 Query: 738 IGRGTATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 IGRGT+T DG+SIAWA +EYLH + + L ATH+HEL ++ + R N + V + Sbjct: 716 IGRGTSTYDGISIAWAMVEYLHNHPSAHAKTLFATHYHELNEMEQMCPRVKNYHVSVKEM 775 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ------KD 849 I+FL K+ G +HS+GI V ++AG+P +V+SRA +IL+ E +Y +N+ Sbjct: 776 GNQIVFLRKLERGGTEHSFGIHVARMAGMPVSVVSRADEILRNLELVYGNNEIVPSRSIK 835 Query: 850 MRLYYPEIQTKESKNN----------LSKNDKLFVE---KIKCLNLDEMSPLTALKTLYA 896 R P KE+ N +D + V+ +IK L+++ ++P+ AL L Sbjct: 836 NRGKKPSPSVKEAAENGAPQNMQLSMFQLDDPVLVQIRDQIKGLDINSLTPIEALNKLNE 895 Query: 897 VKAWT 901 +K T Sbjct: 896 IKKIT 900 >gi|313633305|gb|EFS00157.1| DNA mismatch repair protein MutS [Listeria seeligeri FSL N1-067] Length = 860 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 314/895 (35%), Positives = 500/895 (55%), Gaps = 59/895 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+EIK D+ +F+R+GDFYE+FF+DAL AS+ L ITLT R + IPMCG Sbjct: 5 TPMIKQYLEIKDKYXDAFLFFRLGDFYEMFFEDALNASQILEITLTGREGGTKEKIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A+ YI LI+ G+++AICEQ+E P + K +V+R VV+L++PGT+ +++ L Sbjct: 65 VPYHSASGYIDTLIEKGYKVAICEQVEDP-----KTTKGMVKREVVQLISPGTVMDERGL 119 Query: 146 SPTDSNYLMAVARIR-TEWAIAWIDISTGIFK--ISTSNHDRLISDIMRIDPREIIFSEK 202 ++NY+ A+ E+ A+ D+STG K + ++ DRLI+++ + +E+I SE Sbjct: 120 KAKENNYIAALYCYEGKEYGFAYSDLSTGELKSTVIEASEDRLINELTTLSTKELIVSES 179 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 E E L NV Q + F S+ E N V S S EK A Sbjct: 180 EK---------EVLSNVMKEQLGLTF--SVHEEDAIPVENEKLVTRHMSLS--EKRAIGK 226 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDYS 321 + Y+K+TQ + + + + + +D ++ NLE+ ++ G R+ +LL +D + Sbjct: 227 LLHYLKETQKRDLGHLQQAVHYETSNYMKMDYYSKRNLELAASIRGKGRQGTLLWLLDNT 286 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSI-----NFFIQNPILINPIQKILKSSPDVPR 376 T GGR+ + I PL D KI R + + +FF + ++ N LK+ D+ R Sbjct: 287 QTAMGGRMLKQWIDRPLIDRNKIIERQNDVSELMAHFFERLELVEN-----LKNVYDLER 341 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEKLKKLPQSLEKT 434 R+ G +D+ +R+ + I L + P L ++ ++L LE+ Sbjct: 342 LAGRVAYGNVNARDLIQLRNSLYQIPRIRETLLSMNTPSLTTLANQLDPCEELTGKLEEA 401 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + D P R+GG ++DG ++ LD R K IA L+ K E T IK +K+ Sbjct: 402 IM----DSAPISIREGGIIKDGYNSQLDTYRDASRNGKTWIAELERKERELTGIKTMKVG 457 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N GY+IEVT ++ +L + R+ +QT++N R+ T EL + E I +A + Sbjct: 458 FNRVFGYYIEVTRANTHLL-----PEGRYERKQTLTNAERYITPELKEKEKLILDAEEKS 512 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E + F + + + E L ++ ++ ID + A ++++ ++ RP + + V Sbjct: 513 MELEYQLFTEVRETVKDYIERLQKLAKSVSEIDCLQSFADISEKNHFIRPTLSEDGSLHV 572 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 K GRHP+VEK + QS ++ANDCDL D N ++ L+TGPNM GKST++RQ AL Sbjct: 573 KQGRHPVVEKVMGAQS---YVANDCDL----DANR-EILLITGPNMSGKSTYMRQVALTA 624 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 I AQ+G +VPA A + I D++F+R+G+AD+L +G+STFMVEM+E + + AT S ++ Sbjct: 625 ICAQVGCFVPAEEAVLPIFDQIFTRIGAADDLIAGQSTFMVEMLEARNAIVHATKDSLIL 684 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 DEIGRGTAT DG+++A A IEY+HE + L +TH+HELTDL K L+ N + + Sbjct: 685 FDEIGRGTATYDGMALAQAIIEYIHENVHAKTLFSTHYHELTDLEKELRGLQNIHVSAVE 744 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE----KLYHHNQKDM 850 N ++FLHK+ G AD SYGI V +LA LP ++I RA IL+ E K+ N+K Sbjct: 745 ENGKVVFLHKIKEGPADKSYGIHVAELAELPTSLIERARRILEQLENDEKKIIISNEKQP 804 Query: 851 RLYYPEIQTK----ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWT 901 + E+Q E + L + +++I LN+ +M+P+ A+ LY +++ T Sbjct: 805 EEIHEEVQLSMFPVEPEQKLPSKEAKLIKEIATLNIMQMTPMDAMNKLYELQSKT 859 >gi|303250832|ref|ZP_07337026.1| DNA mismatch repair protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253265|ref|ZP_07535139.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307257680|ref|ZP_07539439.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|302650345|gb|EFL80507.1| DNA mismatch repair protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859252|gb|EFM91291.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306863855|gb|EFM95779.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 864 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 312/891 (35%), Positives = 488/891 (54%), Gaps = 41/891 (4%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 + ++L TPMM QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG Sbjct: 1 MTQDLSKHTPMMAQYLQLKAQNPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGASA 60 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G+ IPM GVP H Y+ KL+ +G +AICEQI P +K V R VVR+VTPG Sbjct: 61 GEPIPMAGVPYHAVEGYLAKLVSLGESVAICEQIGDPAT-----SKGPVERKVVRIVTPG 115 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPRE 196 T++++ LL N + A+ + +AIA +D+++G F I+ N + L +++ R+ E Sbjct: 116 TVSDEALLPERQDNLVAAIYEEKGVFAIATLDMTSGRFLITELPNKEALAAELQRLQLAE 175 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 I+++E + S AE + ++ L +P F+ + + + + ++ FG + V Sbjct: 176 ILYAE-DFSAAEILNNYKGLRR----RPVWEFELVTAINLLNRQFGTQSLAGFGVEKAVV 230 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA + Y ++TQ P I T+ +D+A R NLE+ + L+G E +L Sbjct: 231 ALCAAGCVLHYAQETQRTALPHINSIHLAQNSDTVLLDAATRRNLELTQNLAGGTENTLA 290 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D +T G RL I P+ D K+ R D I+ +Q I +Q +L++ D+ Sbjct: 291 AVLDKCVTPMGSRLLKRWIHQPIRDLEKLKKRQDIIDT-LQKEQRIELLQPLLQNVGDME 349 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN--DLPEELRGAVEKLKKLPQSLEK 433 R L+R+ + P+D+ +R + +I KN +L L V ++ + L Sbjct: 350 RILARVALRSARPRDLTRLRTALAQLPDIA----KNAKNLTASLDALVAQIGDFSE-LHA 404 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + + P RDGG + +G +A LDE R L + + + +L+++ E T I LKI Sbjct: 405 LLERAIIETPPQLIRDGGVIAEGYNAELDEWRELSAGATQYLENLEIREREATGIDTLKI 464 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GY+I+++ A ++ ++ RQT+ N R+ EL E+++ A + Sbjct: 465 GFNAVHGYYIQISQGQAH------KAPMHYVRRQTLKNAERYIIPELKTYEDKVLKAKGA 518 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 +L +E + ++ L + ++ + + A+ ++ +D+ LA A+ NY RP Sbjct: 519 SLALEKQLYDELFDLLMPRLGEMQLAAMALSELDVLTNLAERAESLNYVRPTFSLQRGVN 578 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +K GRHP+VE+ LK PFIAN L+ L ++TGPNMGGKST++RQ ALI Sbjct: 579 IKGGRHPVVEQVLK----DPFIANPVFLNAQR-----HLLVVTGPNMGGKSTYMRQIALI 629 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT S V Sbjct: 630 SLMAYIGSFVPADSAEIGALDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATENSLV 689 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA E+L + + L ATH+ ELT L LK N L Sbjct: 690 LIDEIGRGTSTYDGLSLAWACAEWLAKKTQSLTLFATHYFELTSLPSQLKGVANVHLDAR 749 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL------YHHNQ 847 + + I+F+H V G A SYG+ V LAG+P VI A L E++ H N Sbjct: 750 EHQDSIVFMHSVQEGAASKSYGLAVAALAGVPKQVIQLAKQRLAHLEEISLQTKEAHDNP 809 Query: 848 KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L+ ++Q L + + ++ DE++P AL+ LY +K Sbjct: 810 QGDLLFAADLQETPQIQPLVAQQSELEKALMSIDPDELTPRQALEALYRLK 860 >gi|153001640|ref|YP_001367321.1| DNA mismatch repair protein MutS [Shewanella baltica OS185] gi|166232135|sp|A6WR19|MUTS_SHEB8 RecName: Full=DNA mismatch repair protein mutS gi|151366258|gb|ABS09258.1| DNA mismatch repair protein MutS [Shewanella baltica OS185] Length = 856 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 312/888 (35%), Positives = 478/888 (53%), Gaps = 50/888 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 ++L+ TPMMRQY+ +K+ + D L+FYRMGDFYELF+DDA AS LGI+LT RGK G Sbjct: 7 DDLEKHTPMMRQYLTMKAEHHDMLLFYRMGDFYELFYDDAKRASELLGISLTARGKSGGD 66 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H Y+ KL++IG +AICEQI P +K V R VVR+VTPGTL Sbjct: 67 PIPMAGLPYHAVEGYLAKLVQIGQSVAICEQIGDPATSK-----GPVERKVVRIVTPGTL 121 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREII 198 T++ LL N L AV + + + A +D+S+G F I+ + L +++ R +P EI+ Sbjct: 122 TDEALLQERQDNLLAAVYQGKIGFGYATLDVSSGRFVIAELDTRESLEAELQRTNPVEIL 181 Query: 199 FSEKELSHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFG-SF 252 +SE F LG + +P FD+ S + + + FG + Sbjct: 182 YSED----------FGELGLLNGFKGKRRRPEWEFDYDTSIKLLLAQFGTKDLHGFGIAD 231 Query: 253 SQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 +++ AA + Y+K TQ P I R + ++ +D+A R NLE+ + L+G R+ Sbjct: 232 ARLSLQAAGCLMQYVKDTQRTALPHINAITRFNQTDSIVLDAATRRNLELTQNLAGGRDN 291 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 +L +D + T G R+ I PL D I R ++ + + + + LK+ Sbjct: 292 TLAAVLDNTATPMGSRMLQRWIHQPLRDPKHIKARQQAVTELL-DTAAHEGLHEQLKALG 350 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEKLKKLPQS 430 D+ R ++RL + P+D A +R + + P +LR + L + P Sbjct: 351 DIERIMARLALRTARPRDFARLRQALGLLPELQQSLSTLSAPHTTQLR---QHLGEFPAE 407 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 + L + D+ P RDGG +R+G ++ LDE R L + + + L+ + E T I Sbjct: 408 -QALLERAIVDNPPMLIRDGGVIREGYNSELDEWRGLSEGASDYLVQLEAREKERTGINT 466 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ +N GY+IEV+ +S + + + RQT+ N+ R+ T EL + E ++ ++ Sbjct: 467 LKVGYNRVHGYYIEVSRLQSSQVPLN------YQRRQTLKNMERYITPELKEYEEKVLSS 520 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 AL +E + +E L + I+ + L + ++ A +D+ A A+ Y P + Sbjct: 521 QGKALALEKQLWEQLFDFILPKLHELQDFARAAAELDVLSNFAERAETLGYTCPELSQDI 580 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 ++ GRHP+VE+ S PFIAN L N ++ ++TGPNMGGKST++RQ Sbjct: 581 GVQIEAGRHPVVERV----SQTPFIANPVTL-----HNQRRMLIVTGPNMGGKSTYMRQV 631 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI +MA +G +VPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT Sbjct: 632 ALITLMAHIGCFVPADRALIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATAS 691 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V++DEIGRGT+T DGLS+AW+ EYL + L ATH+ ELT L + + +N L Sbjct: 692 SLVLMDEIGRGTSTYDGLSLAWSAAEYLAQQVGAMTLFATHYFELTQLPELMAGVYNVHL 751 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM 850 + ++ I F+H V G A SYG+QV LAG+PN VI A L+ E H + Sbjct: 752 DAIEHDDTIAFMHAVQEGAASKSYGLQVAALAGVPNKVIKAAKHKLQQLESRDHQAEGTR 811 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + E N + + K+ +N D ++P AL LY +K Sbjct: 812 TPIQSLLALPEPVENPA------LTKLSSINPDNLTPKQALDLLYELK 853 >gi|260494138|ref|ZP_05814269.1| DNA mismatch repair protein MutS [Fusobacterium sp. 3_1_33] gi|260198284|gb|EEW95800.1| DNA mismatch repair protein MutS [Fusobacterium sp. 3_1_33] Length = 881 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 314/891 (35%), Positives = 519/891 (58%), Gaps = 38/891 (4%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TP+M+QY +IK P+ ++ YR+GDFYE+FF+DA +AS+ LG+TLTKR K G+D+ Sbjct: 6 MSADTPLMQQYKKIKEEYPNEILMYRLGDFYEMFFEDAKIASKELGLTLTKRNKEKGQDV 65 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 P+ GVP H+ YI KL++ G+ IAIC+Q+E P A +V+R V R++TPGT+ + Sbjct: 66 PLAGVPYHSVASYIAKLVEKGYSIAICDQVEDPKSAT-----GIVKREVTRVITPGTIID 120 Query: 142 DQLLSPTDSNYLMAVARIRTE--WAIAWIDISTG---IFKISTSNH-DRLISDIMRIDPR 195 L ++NY+ + TE AIA+ DI+TG +F+I N ++ +++I +I Sbjct: 121 VDFLDKNNNNYIACIKINTTENVAAIAYADITTGEFSVFEIKGKNFFEKTLAEINKIQAS 180 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ- 254 EI+ EK +++EY L E + + + +ES + Y++I ++D F S+ Sbjct: 181 EILLDEK--TYSEYIELLEERISFTGVKFTKVTNVKKAESYLTSYFDIMSIDVFSLKSKD 238 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSL 314 + +A+A + YI + Q N+ E ++I + + ++ + ++NL ++ + + +L Sbjct: 239 LAISASANLLYYIDELQKGNELPFSKIEYKNIDNIMELNISTQNNLNLVPKKNEEAKGTL 298 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D +T G R + I +P D KI R +++F + +L +++ LK D+ Sbjct: 299 LGVLDDCVTSVGSRELKKIIKNPFLDIEKIRQRQFYVDYFYNDVLLRENVREYLKDIYDI 358 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R ++ G KD+ ++D IR + L ++ +E++ ++ K+ + Sbjct: 359 ERIAGKIIYGTENGKDLLSLKDSIRKSLETYRLLKEH---QEIKNILDIDVKILLDIYNK 415 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + ++ + P R+GG ++DG ++ LDE R + K I ++ + E T IK LKIK Sbjct: 416 IELIIDTEAPFSVREGGIIKDGYNSELDELRKISKLGKDFILEIEQRERERTGIKGLKIK 475 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GYFIEVT ++ ++ +D +I +QT+ N R+ +L + E ++ A + Sbjct: 476 YNKVFGYFIEVTKANEHLVPED------YIRKQTLVNSERYIVPDLKEYEEKVITAKSKI 529 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 +E E F+ L++ I E +SL + IA +DI A +A + +Y +P I + Sbjct: 530 EALEYELFKQLTSEIKEHIDSLYKLANRIANLDIVSNFAHIATKNSYVKPEISEEDILEI 589 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 K GRHPIVE + +S ++ ND L NDKN+ L +LTGPNM GKST+++Q AL + Sbjct: 590 KGGRHPIVETLI---ASGTYVKNDIVL---NDKNN--LIILTGPNMSGKSTYMKQVALNI 641 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMA +GSYV A YA I IVDK+F+RVG++D+L +G+STFM+EM E ASILN ATN+SF++ Sbjct: 642 IMAHIGSYVAADYAKIPIVDKIFTRVGASDDLLTGQSTFMLEMTEVASILNNATNKSFIV 701 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDEIGRGT+T DG+SIA A EY+H + + ATH+HELT+L K L+R N ++V + Sbjct: 702 LDEIGRGTSTYDGISIATAITEYIHNNIGAKTIFATHYHELTELEKELERAINFRVEVKE 761 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE---KLYHHNQKDMR 851 + ++FL +++ G AD SYGI+V +L+G+P V++R+ ILK E L + K + Sbjct: 762 DGKNVVFLREIVKGGADKSYGIEVARLSGVPKEVLNRSNKILKKLETRKNLIENKMKAEQ 821 Query: 852 LYYPEIQTKESKNN----LSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + +E LS+N+ +E +K ++L+ +SPL +L L +K Sbjct: 822 MILFGNGFEEENEEEVEILSENESKVLELLKNMDLNSISPLESLLKLNELK 872 >gi|44888160|sp|Q7MHR2|MUTS_VIBVY RecName: Full=DNA mismatch repair protein mutS Length = 853 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 306/883 (34%), Positives = 482/883 (54%), Gaps = 44/883 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 + TPMM+QY+ +K+ NPD L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IP Sbjct: 5 QQHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKKASQLLDISLTKRGASAGEPIP 64 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H Y+ KL+++G +AICEQ+ P +K V R VVR+VTPGT+T++ Sbjct: 65 MAGVPFHAVEGYLAKLVQLGESVAICEQVGDPAT-----SKGPVERKVVRIVTPGTVTDE 119 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFK-ISTSNHDRLISDIMRIDPREIIFSE 201 LLS N + A+ ++ A +D+++G F+ + + + + +++ R PRE++F E Sbjct: 120 ALLSERLDNLIAAIYHHNGKFGYATLDVTSGRFQLVEPQSEEAMAAELQRTSPRELLFPE 179 Query: 202 KELSHAEYKSLFETLG-NVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTA 259 +++ + G N +P F+ ++ ++ + + FG + + A Sbjct: 180 ------DFEPVHLMTGRNGNRRRPVWEFELETAKQQLNQQFGTKDLVGFGVENAMLGLCA 233 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A I Y+K TQ P I + ++ +D+A R NLE+ + L+G + +L +D Sbjct: 234 AGCLIQYVKDTQRTALPHIRALTYDRQDDSVILDAATRRNLELTQNLAGGSDNTLAAVLD 293 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 T G R+ I P+ T RLD+I ++ L + I ++K D+ R L+ Sbjct: 294 RCATPMGSRMLKRWIHQPMRCITTREHRLDAIAE-LKEQALFSDIHPVVKQIGDIERILA 352 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 RL + P+D+A +R ++ + L N + L A + + + LE+ + Sbjct: 353 RLALRSARPRDLARLRHAMQQLPELAQTLSSLGNSHLKSLATAAAPMDDVCELLERAIK- 411 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 ++ P RDGG + +G A LDE R L D + + L+ + + I LK+ +NN Sbjct: 412 ---ENPPVVIRDGGVIAEGYSADLDEWRDLADGATGYLEKLEEEERDRHGIDTLKVGYNN 468 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 G++I+V+ + ++ ++ RQT+ N R+ EL + E+++ N+ + AL I Sbjct: 469 VHGFYIQVSRGQSHLVPP------HYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALAI 522 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + +E L + ++ L + +A +D+ LA A +YCRP + + G Sbjct: 523 EKQLWEELFDLLLPHLARLQELAAAVAQLDVLQNLAERADTLDYCRPNLTKDPVVHITAG 582 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE Q +S PFIAN +L+ + K+ ++TGPNMGGKST++RQ ALI +MA Sbjct: 583 RHPVVE----QVTSDPFIANPIELN-----SQRKMLIITGPNMGGKSTYMRQTALIALMA 633 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V++DE Sbjct: 634 HIGSYVPAESATIGSIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATANSLVLMDE 693 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGT+T DGLS+AWA+ +L L ATH+ ELT+L L N L + + Sbjct: 694 IGRGTSTYDGLSLAWASAHWLATQIGAMTLFATHYFELTELPNQLPHLANVHLDAVEHGD 753 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 I F+H V G A SYG+ V LAG+P TVI A L E L + P+ Sbjct: 754 SIAFMHAVQEGAASKSYGLAVAGLAGVPKTVIKNARQKLSQLELLSAEGSQ------PKA 807 Query: 858 QTKESKNNLS--KNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +T + N LS + + ++ D+++P AL+ LY +K Sbjct: 808 RTVDIANQLSLIPEPSEVEQALASIDPDDLTPRQALEALYRLK 850 >gi|170723211|ref|YP_001750899.1| DNA mismatch repair protein MutS [Pseudomonas putida W619] gi|229470267|sp|B1JB25|MUTS_PSEPW RecName: Full=DNA mismatch repair protein mutS gi|169761214|gb|ACA74530.1| DNA mismatch repair protein MutS [Pseudomonas putida W619] Length = 857 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 310/884 (35%), Positives = 481/884 (54%), Gaps = 38/884 (4%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L + TPMM+QY ++K+ +PD L+FYRMGDFYE+F++DA A++ L ITLT RG+ G+ Sbjct: 3 DLSAHTPMMQQYWKLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQS 62 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCG+P H+ Y+ KL+K+G + ICEQI P +K V R VVR++TPGT++ Sbjct: 63 IPMCGIPFHSLEGYLAKLVKLGESVVICEQIGDPAT-----SKGPVERQVVRIITPGTVS 117 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIF 199 ++ LL N + A+ + +A +DI++G F + + L++++ RI+P E++ Sbjct: 118 DEALLDERRDNLIAALLGDERLFGLAVLDITSGNFSVQEIKGWENLLAELERINPVELLI 177 Query: 200 SE---KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 + ++L AE + A + FD + + + + FG Sbjct: 178 PDDWPRDLP-AEKRP-------GARRRAPWDFDRDSARKALCQQFATKDLKGFGCDKLTL 229 Query: 257 KTAAAAA-ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA ++Y K+TQ P + E + T+ +D A+R NLE+ L+G R+ +L Sbjct: 230 AIGAAGCLLTYAKETQRTALPHLRSLRHERLDDTVILDGASRRNLELDINLAGGRDNTLQ 289 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 ID T RL + PL D + R DSI + +Q LK D+ Sbjct: 290 SVIDRCQTAMASRLLTRWLNRPLRDLKVLQARQDSIRCLLDG-YRFEKLQPQLKEIGDIE 348 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R L+R+ + P+D+A +RD + + + N + + P R A + L L Sbjct: 349 RILARIGLRNARPRDLARLRDALGALPELQNAMAELEAPHLARLAA--ITGTYPELASLL 406 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + D+ P RDGG L+ G D LD+ ++ + + + + L+ + T + NLK+ + Sbjct: 407 ERAIIDNPPAVIRDGGVLKAGYDNELDDLLAISENAGQFLIDLEAREKARTGLANLKVGY 466 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GYFIE+ + A D +I RQT+ RF T EL E++ +A + AL Sbjct: 467 NRVHGYFIELPTKQAEQAPGD------YIRRQTLKGAERFITPELKAFEDKALSAKSRAL 520 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 E ++ L +I L +++ +A +D+ LA A + P + + Sbjct: 521 AREKMLYDALLETLISHLAPLQDSAAALAELDVLSNLAERALNLDLNCPRFVDEPCLRID 580 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ L + PF+AND L NS ++ ++TGPNMGGKST++RQ ALIV+ Sbjct: 581 QGRHPVVEQVL----TTPFVANDLGLD-----NSTRMLIITGPNMGGKSTYMRQTALIVL 631 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MA +GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V++ Sbjct: 632 MAHIGSFVPAASCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDRSLVLM 691 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGT+T DGLS+AWA E L + R L ATH+ ELT L +S N L ++ Sbjct: 692 DEVGRGTSTFDGLSLAWAAAERLAQL-RAYTLFATHYFELTVLPESEPLVANVHLNATEH 750 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE-KLYHHNQKDMRLYY 854 NE I+FLH V+PG A SYG+ V +LAG+P+ VI RA + L E H Q + Sbjct: 751 NERIVFLHHVLPGPASQSYGLAVAQLAGVPSPVIQRAREHLGRLETSSLPHEQAVSKKTK 810 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E Q + + +EK+ L+LD+M+P A++ LY +K Sbjct: 811 GEPQAPHQSDLFASLPHPAIEKLGKLDLDDMTPRQAIEMLYQLK 854 >gi|116754772|ref|YP_843890.1| DNA mismatch repair protein MutS [Methanosaeta thermophila PT] gi|121694816|sp|A0B976|MUTS_METTP RecName: Full=DNA mismatch repair protein mutS gi|116666223|gb|ABK15250.1| DNA mismatch repair protein MutS [Methanosaeta thermophila PT] Length = 857 Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust. Identities = 318/884 (35%), Positives = 479/884 (54%), Gaps = 64/884 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKH-LGKDIPMC 84 +P+M QY IK PD+L+ +R+GDFYE F +DA+ SR L ITLT R K G IP+ Sbjct: 6 SPLMEQYSRIKQQCPDALLLFRVGDFYETFGEDAITTSRTLNITLTSRQKDDEGNRIPLA 65 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G+P H+ + Y+ +L+ GH++AICEQ+E P +AK +VRR + R+VTPGT+ E L Sbjct: 66 GIPYHSLDVYLSRLVNAGHKVAICEQVEDPKQAK-----GIVRREITRIVTPGTVIEPAL 120 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 L +NYL AV ++ +D+STG F S +RL S++ R P E Sbjct: 121 LQERSNNYLAAVLLENGLAGLSLLDLSTGDFIASEVPVERLGSELARFSPAE-------- 172 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSF-------SQVEK 257 +A P V + ++ A+ +++ G S + Sbjct: 173 ---------------CLAPPGVSLEGMKFQNLDAELFSLNEASESGGILGDLHKRSPLCA 217 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLK 316 AA A +SY+++T++ + I + +D NLEI R L GSR +L++ Sbjct: 218 RAACAILSYLRETRIQSVDHIKPIRMISSSEYMLLDEITLRNLEIFRNLRDGSRSGTLME 277 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D ++T G R A + P I R D+I ++ ++ I ++L D+ R Sbjct: 278 ILDETVTPMGSRTLARWLQMPSMSLEVIRRRQDAIEEMVRRAVIREEISELLDGLSDLER 337 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVE--KLKKLPQSLE 432 + R+ +G PKD+ +R +R I + L+++ E+R ++ +L L LE Sbjct: 338 IIGRVSLGNAGPKDLVALRSSLRRIPEIAHAMSALESEYLVEIRKRLDASELDDLVVLLE 397 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 + LS DD PT RDGG +RDG LDE RS + IA L+ + T IK+LK Sbjct: 398 RALS----DDPPTSPRDGGVIRDGYSPELDEIRSALRNGRSWIAELESSERKRTGIKSLK 453 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 + +NN GY+IEVT + S++ D +I +QT+SN RF T EL ++E+R+ +A Sbjct: 454 VGYNNVFGYYIEVTKPNLSMVPDD------YIRKQTLSNAERFVTRELKEVESRVLSAQE 507 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 + +E E F L + ++ S+ + I +D + L A RP++D Sbjct: 508 RSSALEYEVFLDLRGQVASRTRSVQEVAAAIGELDTILGLTRAALMGAMVRPVVDAGREV 567 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 I++D RHP++++ +K F+ ND + S +LTGPNM GKSTF+RQ AL Sbjct: 568 ILRDSRHPVLDRVMKGG----FVPNDLTMD-----ESSWFMILTGPNMAGKSTFMRQVAL 618 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 I IMAQ+GS+VPASYA IG++D++F+RVG+ D+L SGRSTFMVEM E A+IL AT S Sbjct: 619 IAIMAQIGSFVPASYAKIGLIDRIFTRVGARDDLVSGRSTFMVEMSELANILVSATKDSL 678 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 ++LDEIGRGT+T DGLSIAWA EY+H + + + ATH+H+LT L +L N ++ V Sbjct: 679 ILLDEIGRGTSTFDGLSIAWAVSEYIHSRIKAKTIFATHYHQLTQL--NLPGIVNYSMAV 736 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR- 851 + I FL V+PG + SYGI V +LAG+P VI RA ++L E+ + R Sbjct: 737 KEEGRSITFLRTVVPGATNKSYGIHVARLAGVPEHVIRRAEELLDIIEEQAAIEIRKCRS 796 Query: 852 LYYPEIQTKESKNNLSKN-DKLFVEKIKCLNLDEMSPLTALKTL 894 P+ T+ N ++ D +E+IK L ++++PL AL L Sbjct: 797 KERPKRYTQLIFFNQPESIDNDILEEIKNLEPEKITPLQALNLL 840 >gi|238786820|ref|ZP_04630621.1| DNA mismatch repair protein mutS [Yersinia frederiksenii ATCC 33641] gi|238725188|gb|EEQ16827.1| DNA mismatch repair protein mutS [Yersinia frederiksenii ATCC 33641] Length = 851 Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust. Identities = 317/890 (35%), Positives = 488/890 (54%), Gaps = 57/890 (6%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 + L S TPMM+QY+ +K+ +PD L+FYRMGDFYELF+ DA AS+ L I+LTKRG G+ Sbjct: 5 DKLDSHTPMMQQYLRLKAQHPDILLFYRMGDFYELFYSDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H+ +Y+ KL+++G AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGVPYHSIENYLAKLVQLGESAAICEQIGDPATSK-----GPVERKVVRIVTPGTV 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F+++ ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDARGFGYATLDISSGRFRVAEPADLETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + E + E SL E + +P F+ ++ ++ + + FG Q + Sbjct: 180 YPE----NFEQMSLIEHRHGLR-RRPLWEFELETAKQQLNLQFGTRDLIGFG-VEQAHQA 233 Query: 259 --AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 AA + Y+K TQ + P I E Q + +D+A R NLE+ LSG E +L Sbjct: 234 LRAAGCLLQYVKDTQRTSLPHIRGLTMERQQDGIIMDAATRRNLELTLNLSGGTENTLAA 293 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D S+T G R+ + P+ D + R +I +Q+ + +Q L+ D+ R Sbjct: 294 ILDCSVTAMGSRMLKRWLHMPIRDINILTDRQQAIGG-LQD--ITAELQAPLRQVGDLER 350 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKT 434 L+RL + P+D+A +R + I L ++P + L V + +L LE+ Sbjct: 351 ILARLALRTARPRDLARMRHAFQQLPEIHRLLQPVNVPHVQNLLSQVGQFDELQDLLERA 410 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + + P RDGG + G +A LDE R+L D + + L+++ E+ + LK+ Sbjct: 411 IV----EAPPVLVRDGGVIAPGYNAELDEWRALADGATDYLDRLEIREREKLGLDTLKVG 466 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N GY+I+V+ + ++ ++ RQT+ N R+ EL + E+++ + A Sbjct: 467 FNGVHGYYIQVSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSKGKA 520 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L IE +E + + ++ L ++ +A +D+ LA A+ NY PI+ + + Sbjct: 521 LAIEKGLYEEIFDLLLPHLSELQTSANALAELDVLANLAERAETLNYNCPILSDKPGIKI 580 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 GRHP+VE+ L S+PFI+N LS ++ ++TGPNMGGKST++RQ ALIV Sbjct: 581 TGGRHPVVEQVL----SEPFISNPLTLSPQR-----RMLIITGPNMGGKSTYMRQTALIV 631 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++A MGSYVPA A IG VD++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT QS V+ Sbjct: 632 LLAHMGSYVPADQATIGPVDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEQSLVL 691 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 692 MDEIGRGTSTYDGLSLAWACAENLASRIKAMTLFATHYFELTTLPEKMEGVVNVHLDALE 751 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH------NQK 848 E I F+H V G A SYG+ V LAG+P VI RA LK E L ++ + Sbjct: 752 HGETIAFMHSVQDGAASKSYGLAVAALAGVPRDVIKRARQKLKELESLSNNAAASKIDGS 811 Query: 849 DMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 M L E+ VE ++ L+ D +SP AL+ +Y +K Sbjct: 812 QMTLLNEEVPPA-------------VEALEALDPDSLSPRQALEWIYRLK 848 >gi|325576886|ref|ZP_08147501.1| DNA mismatch repair protein MutS [Haemophilus parainfluenzae ATCC 33392] gi|325161092|gb|EGC73210.1| DNA mismatch repair protein MutS [Haemophilus parainfluenzae ATCC 33392] Length = 860 Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust. Identities = 308/892 (34%), Positives = 491/892 (55%), Gaps = 44/892 (4%) Query: 16 IDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK 75 ++L++N TPMM+QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG+ Sbjct: 1 MNLQDNFDQHTPMMQQYLKLKAENPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGQ 60 Query: 76 HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVT 135 G IPM GVP H Y+ KL+++G +AICEQ+ P +K V R +VR+VT Sbjct: 61 SAGNPIPMAGVPYHAVEGYLAKLVQLGEPVAICEQVGDPATSK-----GPVERKIVRIVT 115 Query: 136 PGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSN-HDRLISDIMRIDP 194 PGT++++ LL N ++AV + + ++ +A +D+++G F++ + + L +++ RI+P Sbjct: 116 PGTVSDEALLPERQDNLIVAVYQEKEKFGLATLDMTSGRFQLCEPHSKEALQAELQRINP 175 Query: 195 REIIFSE--KELSHAE-YKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS 251 E+++ E E++ E YK L +P F+ S + S + + + FG Sbjct: 176 VELLYCEDFAEMAIIEHYKGLRR--------RPIWEFELSTAISELNRQFGTKDLRAFG- 226 Query: 252 FSQVEKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL 306 VEK+ AA + Y K+TQ + P I + +D+A R NLE+ + L Sbjct: 227 ---VEKSPLGLAAAGCLLQYAKETQRASLPHIQSISVIQNNDNIQLDAATRRNLELTQNL 283 Query: 307 SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK 366 +G E +L +D +T G RL I P+ + + R +I I+ L + +Q Sbjct: 284 AGGTENTLASVLDKCVTPMGSRLLKRWIHQPIRQTDILLKRQKTIGEIIEQD-LYHELQP 342 Query: 367 ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK 426 L+ D+ R L+R+ + P+D+ +R + I + + L ++ Sbjct: 343 YLQQVGDMERILARVALRSARPRDLTRLRTALEQ-IEPIKSLIHTKTSSNLTALSAQIDD 401 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 +E L+ + + P RDGG + +G +A LDE R+L + + + +L+ + E T Sbjct: 402 FSAQIE-LLNKAIIETPPLLIRDGGVIAEGYNAELDEWRTLSAGATQYLENLEQREREST 460 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 I LKI N GY+I+++ A ++ ++ RQT+ N R+ EL + E++ Sbjct: 461 GIDTLKIGFNAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKEYEDK 514 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 + + +AL +E + ++ L + ++ L S ++ +D+ + LA A+ NY P Sbjct: 515 VLKSKGAALALEKQLYDELFDLLLPHLGQLQLTSLALSELDVLVNLAERAETLNYVAPQF 574 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 + +++GRHP+VE+ LK PFIAN +L+ L ++TGPNMGGKST+ Sbjct: 575 SDEIGVKIENGRHPVVEQVLK----DPFIANPVNLN-----QQRHLLIITGPNMGGKSTY 625 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ ALI ++A +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+Q Sbjct: 626 MRQTALITLIAYIGSFVPADSAVIGQIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQ 685 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT+QS V++DEIGRGT+T DGLS+AWA E+L + R L ATH+ ELT L + ++ Sbjct: 686 ATSQSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKTRSLTLFATHYFELTALPEQIEGIA 745 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN 846 N L + N I F+H V G A SYG+ V LAG+P +VI A L EKL N Sbjct: 746 NIHLDALEHNNTIAFMHAVQDGAASKSYGLAVAALAGVPQSVIKLAKQKLHQLEKLSAQN 805 Query: 847 QKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + + + E I+ L+ DE+SP AL LY +K Sbjct: 806 GDQQIQHLRALNQHQGELAFEAEPDALREAIEQLDPDELSPKQALAYLYQLK 857 >gi|170025639|ref|YP_001722144.1| DNA mismatch repair protein MutS [Yersinia pseudotuberculosis YPIII] gi|238688431|sp|B1JJF1|MUTS_YERPY RecName: Full=DNA mismatch repair protein mutS gi|169752173|gb|ACA69691.1| DNA mismatch repair protein MutS [Yersinia pseudotuberculosis YPIII] Length = 851 Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust. Identities = 315/889 (35%), Positives = 488/889 (54%), Gaps = 55/889 (6%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 + L S TPMM+QY+ +K+ +P+ L+FYRMGDFYELF+ DA AS+ L I+LTKRG G+ Sbjct: 5 DKLDSHTPMMQQYLRLKAQHPEILLFYRMGDFYELFYSDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H+ +Y+ KL+++G AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGVPYHSIENYLTKLVQLGESAAICEQIGDPATSK-----GPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F+++ ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDAKGFGYATLDISSGRFRVAEPADLETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 + E + E SL E + +P F+ ++ ++ + + FG + + Sbjct: 180 YPE----NFEPMSLIEHRHGLR-RRPLWEFELDTAKQQLNLQFGTRDLIGFGVEQAHLAL 234 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA + Y+K TQ + P I E Q + +D+A R NLE+ + LSG E +L Sbjct: 235 RAAGCLLQYVKDTQRTSLPHIRGLTMERQQDGIIMDAATRRNLELTQNLSGGSENTLAAI 294 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D S+T G R+ + P+ D + R +I +Q+ + +Q L+ D+ R Sbjct: 295 LDCSVTPMGSRMLKRWLHMPIRDIRVLTDRQQAIGG-LQD--IAAELQTPLRQVGDLERI 351 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKTL 435 L+RL + P+D+A +R + I L D+P + L V + +L LE+ + Sbjct: 352 LARLALRTARPRDLARMRHAFQQLPEIHRLLQPIDVPHVQNLLSQVSQFDELQDLLERAI 411 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + P RDGG + G +A LDE R+L D + + L+++ E+ + LK+ Sbjct: 412 V----ETPPVLVRDGGVIASGYNAELDEWRALADGATDYLDRLEIREREKLGLDTLKVGF 467 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+I+V+ + ++ ++ RQT+ N R+ EL + E+++ + AL Sbjct: 468 NGVHGYYIQVSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSKGKAL 521 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 IE +E + + ++ L ++ +A +D+ LA A+ NY P + + + Sbjct: 522 AIEKGLYEEIFDLLLPHLPELQLSANALAELDVLANLAERAETLNYSCPTLSDKPGIKIM 581 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ LK+ PFI+N LS ++ ++TGPNMGGKST++RQ ALIV+ Sbjct: 582 GGRHPVVEQVLKE----PFISNPLTLSPQR-----RMLIITGPNMGGKSTYMRQTALIVL 632 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +A MGSYVPA A IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT QS V++ Sbjct: 633 LAHMGSYVPADQATIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEQSLVLM 692 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 693 DEIGRGTSTYDGLSLAWACAENLASRIKAMTLFATHYFELTTLPEKMEGVANVHLDALEH 752 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH------NQKD 849 E I F+H V G A SYG+ V LAG+P VI RA LK E L ++ + Sbjct: 753 GETIAFMHSVQEGAASKSYGLAVAALAGVPRDVIKRARQKLKELESLSNNAAASTIDGSQ 812 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 M L EI VE ++ L+ D +SP AL+ +Y +K Sbjct: 813 MTLLNEEIPPA-------------VEALEALDPDSLSPRQALEWIYRLK 848 >gi|269836700|ref|YP_003318928.1| DNA mismatch repair protein MutS [Sphaerobacter thermophilus DSM 20745] gi|269785963|gb|ACZ38106.1| DNA mismatch repair protein MutS [Sphaerobacter thermophilus DSM 20745] Length = 871 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 312/896 (34%), Positives = 492/896 (54%), Gaps = 46/896 (5%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 STP+ RQY+ IK PD++VF+R+GDFYE F DDA LA+ L ITLT R G IPM Sbjct: 2 STPIRRQYLSIKRQYPDTIVFFRLGDFYETFDDDAKLAASVLDITLTSREMGRGNRIPMA 61 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G+P H A YI +L+ GH++AICEQI P + LV R V R+VTPGT+T+ + Sbjct: 62 GIPCHAAQGYIARLVGAGHKVAICEQIGEPT------GRELVERRVTRIVTPGTVTDPAM 115 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLIS-------DIMRIDPREI 197 L ++Y+ AV +A DISTG F + N + +++R+ P EI Sbjct: 116 LDSDTNHYIAAVLLDGARAGLAVADISTGEFATTEINAADPAAARAAVHRELLRLHPAEI 175 Query: 198 IFSEKELSHAEYKSLFETL--GNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ- 254 + + AE E + G + + +++ + ++ + T++ +G + Sbjct: 176 V-APASPPDAEDPLPAEVVPEGAYITRRDRSEWRLEVADEELRRHFGVETLEAYGCAGKP 234 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSL 314 AA A + Y+ +TQ+ + I + + +D R NLE+ + G R SL Sbjct: 235 FAIRAAGALLQYLAETQVGSLKQIVDLVTYSTERYMSLDGQTRRNLELSESSRGERRHSL 294 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 + +D + T G R+ + PL D ++ R D++ +F+ ++ ++ L D+ Sbjct: 295 IAVLDQTRTPMGARMLRRWVGQPLLDLAELQDRQDAVAYFVDRALVRARLRDALGHVSDL 354 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE-- 432 R ++R+ G P+++ + ++ I + D P + G P E Sbjct: 355 ERLINRVVTGAAGPRELLSLARSLQRLPEINEILGDGDRPCLVAGP-------PDCSETA 407 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 + + L D+ P G +R G LD R+ +++ IA L+ E T IK+LK Sbjct: 408 RLIVQALVDEPPAVLGGGPTIRAGFSPELDGLRASSREAREWIAGLEQAERERTGIKSLK 467 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 + N GY+IEV+ ++ S + D + K QT+ N R+ T EL + E+R+ NA Sbjct: 468 VGFNKVFGYYIEVSRANISAVPSDYQRK------QTLVNAERYITPELKEYESRVLNAEE 521 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 +E + + + + ++S+ A+Q +A +D+ ALA +A + Y RP +D+ST Sbjct: 522 RIADLEEQVYRRVLAQVAAAADSVRAAAQAVAQLDVLSALAEVAVRRRYVRPELDDSTVL 581 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 + GRHP+VE TL+ + F+ ND L D S ++ +LTGPNM GKST+LRQ AL Sbjct: 582 EIVGGRHPVVEVTLE---TGQFVPNDTYL----DTESNQITILTGPNMAGKSTYLRQVAL 634 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 IV++AQ+GS+VPA A IG+VD++F+R+G+ D++A+G+STFMVEM+ETA+IL+ AT +S Sbjct: 635 IVLLAQIGSFVPAERARIGLVDRIFTRIGAQDDIATGQSTFMVEMVETATILHHATPRSL 694 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATL 790 V+LDEIGRGT+T DGL+IA A +E+LH + R C+ L ATH+HELT+L K L R N + Sbjct: 695 VVLDEIGRGTSTYDGLAIARAVVEHLHNSPRLGCKTLFATHYHELTELEKILPRVRNYRV 754 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM 850 V + + ++FLH+V+PG AD SYGI V +LAG+P V+ RA +IL E ++ Sbjct: 755 DVLEEGDEVVFLHRVVPGGADRSYGIHVAQLAGMPRAVVRRAGEILADLEGSAERTERGR 814 Query: 851 R---LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTLE 903 R + P ++ + L VE +K L+++ ++PL AL TLY ++ L+ Sbjct: 815 RRKAMATPRVEAMQL--TLFGVPDPIVEDLKALDVESLTPLEALTTLYELRRRALD 868 >gi|87122440|ref|ZP_01078320.1| DNA mismatch repair protein MutS [Marinomonas sp. MED121] gi|86162233|gb|EAQ63518.1| DNA mismatch repair protein MutS [Marinomonas sp. MED121] Length = 868 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 317/889 (35%), Positives = 483/889 (54%), Gaps = 47/889 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY +KS +P+ L+FYRMGDFYE+F+DDA A+ L ITLT RG G+ IPM G Sbjct: 10 TPMMRQYFGLKSQHPNELLFYRMGDFYEIFYDDAKKAAHLLDITLTSRGHSGGQPIPMAG 69 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H A +YI +L+++G + +CEQ+ P +K V R V R+VTPGTL+++ L Sbjct: 70 IPYHAAENYIARLVRMGESVVVCEQVGDPATSK-----GPVERQVARIVTPGTLSDEAFL 124 Query: 146 SPTDSNYLMAVARIRTE----WAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFS 200 N L+++A + + + +++D+++G F + D S++ R+ P EI+ S Sbjct: 125 EERKENLLVSIAHLSRKQEDIYGFSYLDMASGRFSVFEVEGVDAFDSELQRLAPTEILVS 184 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTA 259 E S ++L V P FD+ ++ ++ + FG A Sbjct: 185 EDFPS----RNLITLEKGVRELGP-WHFDYESCYRQLIQQFDTKDLTGFGCEELSAAIAA 239 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A A + Y K TQ P I E ++ ID A R NLEI LSGS +L +D Sbjct: 240 AGALLQYAKDTQRSALPHIQAITLEHKDESVQIDGATRRNLEIDLNLSGSTSNTLTSVLD 299 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + G RL + P + + IN R D++ I N L + I+ LK D+ R L+ Sbjct: 300 RCSSPMGSRLLKRWLHQPSRNLSIINARQDAVQNLINN-YLYDLIKPELKEVGDIERILA 358 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ +G P+D+ +R + + I + D L+ ++L LP+ L + L+ + Sbjct: 359 RVALGSARPRDLLRLRFALEAIPKIKQHLIAID-DAHLQALNQQLSPLPE-LTQELAIAI 416 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 ++ P+ RDGG G D LDE ++L + +A L+ + E T I +LK+ N Sbjct: 417 VENPPSVVRDGGIFAKGYDGELDELQALSTNATDYLAELEQREKERTGINSLKVGFNRVH 476 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IE+ S L D D ++ RQT+ N RF T EL E++ +A + AL E Sbjct: 477 GYYIEI-----SRLHSDQAPVD-YVRRQTLKNAERFITPELKTFEDKALSAKSKALAREK 530 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 +E L I E+ +L +S ++ +D+ A A+ Y RP+I++ + +GRH Sbjct: 531 HLYEQLLGTINEELIALQTSSNALSELDVLANFAERAERHRYVRPVIEDKPGIEILEGRH 590 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE + ++PFI ND +S L ++TGPNMGGKST++RQ ALI ++A Sbjct: 591 PVVESVI----TEPFIPNDLIMSPER-----SLLMITGPNMGGKSTYMRQIALITLLAHT 641 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 G +VPA A++ +VD++F+R+GS+D+LA GRSTFMVEM ETA+ILN AT +S V++DE+G Sbjct: 642 GCFVPAEAANLSLVDRIFTRMGSSDDLAGGRSTFMVEMTETANILNNATPKSLVLMDEVG 701 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGT+T DGLS+AW+ +++L +C L ATH+ ELT L+ LK N L ++ + I Sbjct: 702 RGTSTFDGLSLAWSAVDHLANQVKCNVLFATHYFELTLLADELKNAANVHLTATEYEDSI 761 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 +FLHKV G A SYG+QV +LAG+P VI A D L E + +D+ + T Sbjct: 762 VFLHKVHDGAASQSYGLQVAQLAGVPRDVIQAAKDKLAELEL----SNQDLDISQSPTHT 817 Query: 860 KESKNNL---------SKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 K K+ S D+ +K+ + LD+ +P AL LY ++A Sbjct: 818 KPPKSQAAPLQADLFSSSLDQEVKDKLSSIKLDDTTPKQALDALYELQA 866 >gi|304410158|ref|ZP_07391777.1| DNA mismatch repair protein MutS [Shewanella baltica OS183] gi|307302131|ref|ZP_07581889.1| DNA mismatch repair protein MutS [Shewanella baltica BA175] gi|304351567|gb|EFM15966.1| DNA mismatch repair protein MutS [Shewanella baltica OS183] gi|306914169|gb|EFN44590.1| DNA mismatch repair protein MutS [Shewanella baltica BA175] Length = 856 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 311/888 (35%), Positives = 478/888 (53%), Gaps = 50/888 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 ++L+ TPMMRQY+ +K+ + D L+FYRMGDFYELF+DDA AS LGI+LT RGK G Sbjct: 7 DDLEKHTPMMRQYLTMKAEHHDMLLFYRMGDFYELFYDDAKRASELLGISLTARGKSGGD 66 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H Y+ KL++IG +AICEQI P +K V R VVR+VTPGTL Sbjct: 67 PIPMAGLPYHAVEGYLAKLVQIGQSVAICEQIGDPATSK-----GPVERKVVRIVTPGTL 121 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREII 198 T++ LL N L AV + + + A +D+S+G F I+ + L +++ R +P EI+ Sbjct: 122 TDEALLQERQDNLLAAVYQGKIGFGYATLDVSSGRFVIAELDTRESLEAELQRTNPVEIL 181 Query: 199 FSEKELSHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFG-SF 252 +SE F LG + +P FD+ S + + + FG + Sbjct: 182 YSED----------FGELGLLNGFKGKRRRPEWEFDYDTSIKLLLAQFGTKDLHGFGIAD 231 Query: 253 SQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 +++ AA + Y+K TQ P I R + ++ +D+A R NLE+ + L+G R+ Sbjct: 232 ARLSLQAAGCLMQYVKDTQRTALPHINAITRFNQTDSIVLDAATRRNLELTQNLAGGRDN 291 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 +L +D + T G R+ I PL D I R ++ + + + + L++ Sbjct: 292 TLAAVLDNTATPMGSRMLQRWIHQPLRDPKHIKARQQAVTELL-DTAAHEGLHEQLRALG 350 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEKLKKLPQS 430 D+ R ++RL + P+D A +R + + P +LR + L + P Sbjct: 351 DIERIMARLALRTARPRDFARLRQALGLLPELQQSLSTLSAPHTTQLR---QHLGEFPAE 407 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 + L + D+ P RDGG +R+G ++ LDE R L + + + L+ + E T I Sbjct: 408 -QALLERAIVDNPPMLIRDGGVIREGYNSELDEWRGLSEGASDYLVQLEAREKERTGINT 466 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ +N GY+IEV+ +S + + + RQT+ N+ R+ T EL + E ++ ++ Sbjct: 467 LKVGYNRVHGYYIEVSRLQSSQVPLN------YQRRQTLKNMERYITPELKEYEEKVLSS 520 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 AL +E + +E L + I+ + L ++ A +D+ A A+ Y P + Sbjct: 521 QGKALALEKQLWEQLFDLILPKLHELQAFARAAAELDVLSNFAERAETLGYTCPELSQDI 580 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 ++ GRHP+VE+ S PFIAN L N ++ ++TGPNMGGKST++RQ Sbjct: 581 GVQIEAGRHPVVERV----SQTPFIANPVTL-----HNQRRMLIVTGPNMGGKSTYMRQV 631 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI +MA +G +VPA +A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT Sbjct: 632 ALITLMAHIGCFVPADHALIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATAS 691 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V++DEIGRGT+T DGLS+AW+ EYL + L ATH+ ELT L + + +N L Sbjct: 692 SLVLMDEIGRGTSTYDGLSLAWSAAEYLAQQVGAMTLFATHYFELTQLPELMAGVYNVHL 751 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM 850 + ++ I F+H V G A SYG+QV LAG+PN VI A L+ E H + Sbjct: 752 DAIEHDDTIAFMHAVQEGAASKSYGLQVAALAGVPNKVIKAAKHKLQQLESRDHQAEGTR 811 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + E N + + K+ +N D ++P AL LY +K Sbjct: 812 TPIQSLLALPEPVENPA------LTKLSSINPDNLTPKQALDLLYELK 853 >gi|254481736|ref|ZP_05094979.1| DNA mismatch repair protein MutS [marine gamma proteobacterium HTCC2148] gi|214037865|gb|EEB78529.1| DNA mismatch repair protein MutS [marine gamma proteobacterium HTCC2148] Length = 902 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 298/831 (35%), Positives = 466/831 (56%), Gaps = 45/831 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +N TPMM Q++ IK+ +P L+FYRMGDFYELF+DDA A+ L ITLT RGK G+ Sbjct: 36 KNNSEHTPMMVQFLAIKADHPRDLLFYRMGDFYELFYDDAKTAAELLDITLTARGKSNGE 95 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPMCGVP H A +Y+ +L+K G +AI EQI P +K V R VVR+VTPGTL Sbjct: 96 PIPMCGVPYHAAENYLARLVKAGVSVAIAEQIGDPAT-----SKGPVERKVVRVVTPGTL 150 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREII 198 +++ LL N L+AV++ ++ +A++D+++G F++ S + L ++ R+DP E + Sbjct: 151 SDEALLEERVDNLLLAVSQRGEDYGMAYLDLASGRFRVLEVSGDEALTGELQRLDPAETL 210 Query: 199 FSEKELSHAEYKSLFETLGNVAV-------AQPNVFFDHSISESRIADYYNITTVDTFGS 251 + + T+G+ A+ AQP FD+ + + + FG Sbjct: 211 YCD-------------TIGHTAITSRRGARAQPEWEFDNESGSRALNAQFQTHDLQGFGC 257 Query: 252 FS-QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR 310 ++ AA + Y+K TQ + P I E ++++ +D+A R NLEI ++G Sbjct: 258 DRLKLAIGAAGCLLQYVKDTQRSSLPHIRSMSHESREASVILDAATRRNLEIDINMAGGD 317 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 +L +D +T G RL + PLTD + + R D+I N ++ LK Sbjct: 318 TNTLYSVLDKGVTAMGSRLLRRWLHRPLTDISTLEARQDAIGAICAN-YHYETVRDALKP 376 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS 430 D+ R L+R+ + P+D+ + I + + L L + L ++ P Sbjct: 377 IGDMERILTRVALRSARPRDLTRLLSSI-AALPQLRSQLGHCSATLLSKLADQAGDYPDM 435 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 ++ L +++ ++ P R+GG + +G DA LDE R + + + ++ + E T I Sbjct: 436 VDLLLRAVI-ENPPVVIREGGVIANGYDAELDELRKISTGATDYLLEIEQREREATGIST 494 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ +N GY+IE++ + + ++ +I RQT+ N RF T EL + E++ ++ Sbjct: 495 LKVGYNRVHGYYIEISRAQSD------KAPAEYIRRQTLKNAERFITPELKEFEDKALSS 548 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 + AL E +E L + EQ L + + ++ ID+ L+ A + CRP D Sbjct: 549 KSRALAREKALYEELIERLNEQLGQLQDTAAAVSEIDVLACLSERADSLSLCRPQFDREQ 608 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 F V GRH +VE+ L++ PFIAND L +S ++ L+TGPNMGGKST++RQN Sbjct: 609 VFEVSQGRHLVVEQVLEE----PFIANDTLLD-----DSRRMLLITGPNMGGKSTYMRQN 659 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 A+I ++A +GSYVPAS A + +D++F+R+GS+D+LASGRSTFMVEM ETA+IL+ AT + Sbjct: 660 AVIALLAHIGSYVPASAARLAPMDRIFTRIGSSDDLASGRSTFMVEMTETANILHNATPR 719 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V++DE+GRGT+T DGLS+AWA L + + L ATH+ ELT L + N L Sbjct: 720 SLVLMDEVGRGTSTFDGLSLAWAAAVELAQNVKAFTLFATHYFELTALPEQCPTMANVHL 779 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 ++ + ++FLH + G A+ S+G+QV KLAG+P+ V+ A D LK EK Sbjct: 780 DATEHQDHVVFLHHIQDGPANRSFGLQVAKLAGIPSRVLQAAGDKLKALEK 830 >gi|190411097|gb|ACE78303.1| MutS [Vibrio parahaemolyticus] Length = 841 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 294/825 (35%), Positives = 467/825 (56%), Gaps = 36/825 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 + TPMM+QY+++K+ NP+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IP Sbjct: 5 QKHTPMMQQYLKLKAENPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGSSAGEPIP 64 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+T++ Sbjct: 65 MAGVPFHAVEGYLAKLVQLGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTVTDE 119 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSE 201 LLS N + A+ ++ A +D+++G F+++ + +++++ R PRE++F E Sbjct: 120 ALLSERLDNLIAAIYHHNGKFGYATLDVTSGRFQLTEPETEEAMMAELQRTAPRELLFPE 179 Query: 202 KELSHAEYKSLF-ETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTA 259 +++ ++ + N +P F+ ++ ++ + + FG + + A Sbjct: 180 ------DFEPVYLMSNRNGNRRRPVWEFELDTAKQQLNQQFGTRDLVGFGVEHASLGLCA 233 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A I Y+K TQ P I + ++ +D+A R NLEI + L+G + +L +D Sbjct: 234 AGCLIQYVKDTQRTALPHIRSLTFDRQDHSVILDAATRRNLEITQNLAGGTDNTLAAVLD 293 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G R+ + P+ +N RLD+I I++ L +Q LK D+ R L+ Sbjct: 294 HCSTPMGSRMLKRWLHQPMRCIDTLNNRLDAIGE-IKDQGLFTDLQPTLKQIGDIERILA 352 Query: 380 RLKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 RL + P+D+A +R ++ + L L + +L + ++ + LE+ + Sbjct: 353 RLALRSARPRDMARLRHAMQQLPELESLTASLTHPYLVKLAQYAAPIDEVCELLERAIK- 411 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 ++ P RDGG + +G + LDE R L D + + L+ + I LK+ +NN Sbjct: 412 ---ENPPVVIRDGGVIAEGYNEELDEWRKLADGATEYLEKLEADERDRHGIDTLKVGYNN 468 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 G++I+V+ + ++ ++ RQT+ N R+ EL + E+++ N+ + AL + Sbjct: 469 VHGFYIQVSRGQSHLVPP------HYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALAL 522 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + +E L + ++ E + N + ++ +D+ LA A +YCRP + ++ G Sbjct: 523 EKKLWEELFDLLMPHLEQMQNLASAVSQMDVLQNLAERADSLDYCRPTLVKDAGIHIQAG 582 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE Q +S PFIAN +LS S K+ ++TGPNMGGKST++RQ ALI +MA Sbjct: 583 RHPVVE----QVTSDPFIANPIELS-----PSRKMLIITGPNMGGKSTYMRQTALIALMA 633 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GSYVPA A +G +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V++DE Sbjct: 634 HIGSYVPAESAQVGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLVLMDE 693 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGT+T DGLS+AWA+ E+L L ATH+ ELT+L L N L + + Sbjct: 694 IGRGTSTYDGLSLAWASAEWLATQIGAMTLFATHYFELTELPNLLPNLANVHLDAVEHGD 753 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 I F+H V G A SYG+ V LAG+P TVI A L E+L Sbjct: 754 SIAFMHAVQEGAASKSYGLAVAGLAGVPKTVIKNARTKLSQLEQL 798 >gi|37680991|ref|NP_935600.1| DNA mismatch repair protein [Vibrio vulnificus YJ016] gi|37199741|dbj|BAC95571.1| mismatch repair ATPase [Vibrio vulnificus YJ016] Length = 884 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 306/883 (34%), Positives = 482/883 (54%), Gaps = 44/883 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 + TPMM+QY+ +K+ NPD L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IP Sbjct: 36 QQHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKKASQLLDISLTKRGASAGEPIP 95 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H Y+ KL+++G +AICEQ+ P +K V R VVR+VTPGT+T++ Sbjct: 96 MAGVPFHAVEGYLAKLVQLGESVAICEQVGDPAT-----SKGPVERKVVRIVTPGTVTDE 150 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFK-ISTSNHDRLISDIMRIDPREIIFSE 201 LLS N + A+ ++ A +D+++G F+ + + + + +++ R PRE++F E Sbjct: 151 ALLSERLDNLIAAIYHHNGKFGYATLDVTSGRFQLVEPQSEEAMAAELQRTSPRELLFPE 210 Query: 202 KELSHAEYKSLFETLG-NVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTA 259 +++ + G N +P F+ ++ ++ + + FG + + A Sbjct: 211 ------DFEPVHLMTGRNGNRRRPVWEFELETAKQQLNQQFGTKDLVGFGVENAMLGLCA 264 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A I Y+K TQ P I + ++ +D+A R NLE+ + L+G + +L +D Sbjct: 265 AGCLIQYVKDTQRTALPHIRALTYDRQDDSVILDAATRRNLELTQNLAGGSDNTLAAVLD 324 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 T G R+ I P+ T RLD+I ++ L + I ++K D+ R L+ Sbjct: 325 RCATPMGSRMLKRWIHQPMRCITTREHRLDAIAE-LKEQALFSDIHPVVKQIGDIERILA 383 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 RL + P+D+A +R ++ + L N + L A + + + LE+ + Sbjct: 384 RLALRSARPRDLARLRHAMQQLPELAQTLSSLGNSHLKSLATAAAPMDDVCELLERAIK- 442 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 ++ P RDGG + +G A LDE R L D + + L+ + + I LK+ +NN Sbjct: 443 ---ENPPVVIRDGGVIAEGYSADLDEWRDLADGATGYLEKLEEEERDRHGIDTLKVGYNN 499 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 G++I+V+ + ++ ++ RQT+ N R+ EL + E+++ N+ + AL I Sbjct: 500 VHGFYIQVSRGQSHLVPP------HYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALAI 553 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + +E L + ++ L + +A +D+ LA A +YCRP + + G Sbjct: 554 EKQLWEELFDLLLPHLARLQELAAAVAQLDVLQNLAERADTLDYCRPNLTKDPVVHITAG 613 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE Q +S PFIAN +L+ + K+ ++TGPNMGGKST++RQ ALI +MA Sbjct: 614 RHPVVE----QVTSDPFIANPIELN-----SQRKMLIITGPNMGGKSTYMRQTALIALMA 664 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V++DE Sbjct: 665 HIGSYVPAESATIGSIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATANSLVLMDE 724 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGT+T DGLS+AWA+ +L L ATH+ ELT+L L N L + + Sbjct: 725 IGRGTSTYDGLSLAWASAHWLATQIGAMTLFATHYFELTELPNQLPHLANVHLDAVEHGD 784 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 I F+H V G A SYG+ V LAG+P TVI A L E L + P+ Sbjct: 785 SIAFMHAVQEGAASKSYGLAVAGLAGVPKTVIKNARQKLSQLELLSAEGSQ------PKA 838 Query: 858 QTKESKNNLS--KNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +T + N LS + + ++ D+++P AL+ LY +K Sbjct: 839 RTVDIANQLSLIPEPSEVEQALASIDPDDLTPRQALEALYRLK 881 >gi|26988358|ref|NP_743783.1| DNA mismatch repair protein MutS [Pseudomonas putida KT2440] gi|37999632|sp|Q88ME7|MUTS_PSEPK RecName: Full=DNA mismatch repair protein mutS gi|24983109|gb|AAN67247.1|AE016351_9 DNA mismatch repair protein MutS [Pseudomonas putida KT2440] gi|313500207|gb|ADR61573.1| MutS [Pseudomonas putida BIRD-1] Length = 857 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 308/884 (34%), Positives = 480/884 (54%), Gaps = 38/884 (4%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L + TPMM+QY ++K+ +PD L+FYRMGDFYE+F++DA A++ L ITLT RG+ G+ Sbjct: 3 DLSAHTPMMQQYWKLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQS 62 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCG+P H+ Y+ KL+K+G + ICEQI P +K V R VVR++TPGT++ Sbjct: 63 IPMCGIPFHSLEGYLAKLVKLGESVVICEQIGDPAT-----SKGPVERQVVRIITPGTVS 117 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIF 199 ++ LL N + A+ + +A +DI++G F + + L++++ R++P E++ Sbjct: 118 DEALLDERRDNLIAALLGDERLFGLAVLDITSGNFSVQEIKGWENLLAELERLNPVELLI 177 Query: 200 SE---KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 + ++L AE + A + FD + + + + FG Sbjct: 178 PDDWPRDLP-AEKRP-------GARRRAPWDFDRDSARKALCQQFATKDLKGFGCDKLTL 229 Query: 257 KTAAAAA-ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA ++Y K+TQ P + E + T+ +D A+R NLE+ L+G R+ +L Sbjct: 230 AIGAAGCLLTYAKETQRTALPHLRSLRHERLDDTVILDGASRRNLELDINLAGGRDNTLQ 289 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 ID T RL + + PL D + R DSI + + +Q LK D+ Sbjct: 290 SVIDRCQTAMASRLLSRWLNRPLRDLKVLQARQDSIRCLLDS-YRFEKLQPQLKEIGDIE 348 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R L+R+ + P+D+A +RD + + + N + + P R A + L L Sbjct: 349 RILARIGLRNARPRDLARLRDALGALPELQNAMTELEAPHLARLAA--ITGTYPELASLL 406 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + D+ P RDGG L+ G D LDE ++ + + + + L+ + T + NLK+ + Sbjct: 407 ERAIIDNPPAVIRDGGVLKAGYDNELDELLAISENAGQFLIDLEAREKARTGLANLKVGY 466 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GYFIE+ + A D +I RQT+ RF T EL E++ +A + AL Sbjct: 467 NRVHGYFIELPTKQAEQAPGD------YIRRQTLKGAERFITPELKAFEDKALSAKSRAL 520 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 E ++ L +I L +++ +A +D+ LA A + P + ++ Sbjct: 521 AREKMLYDALLETLISHLAPLQDSAAALAELDVLSNLAERALNLDLNCPRFVDEPCLRIE 580 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ L + PF+AND L NS ++ ++TGPNMGGKST++RQ ALIV+ Sbjct: 581 QGRHPVVEQVL----TTPFVANDLGLD-----NSTRMLIITGPNMGGKSTYMRQTALIVL 631 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +A +GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V++ Sbjct: 632 LAHIGSFVPAASCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDRSLVLM 691 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGT+T DGLS+AWA E L + R L ATH+ ELT L +S N L ++ Sbjct: 692 DEVGRGTSTFDGLSLAWAAAERLAQL-RAYTLFATHYFELTVLPESEPLVANVHLNATEH 750 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL-YHHNQKDMRLYY 854 NE I+FLH V+PG A SYG+ V +LAG+P VI RA + L E H Q Sbjct: 751 NERIVFLHHVLPGPASQSYGLAVAQLAGVPTAVIQRAREHLGRLETTSLPHEQPAAHKAK 810 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 Q + + +EK+ L LD+M+P A++ LY +K Sbjct: 811 DAPQVPHQSDLFASLPHPAIEKLGKLQLDDMTPRQAIEMLYQLK 854 >gi|326794019|ref|YP_004311839.1| DNA mismatch repair protein mutS [Marinomonas mediterranea MMB-1] gi|326544783|gb|ADZ90003.1| DNA mismatch repair protein mutS [Marinomonas mediterranea MMB-1] Length = 880 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 314/903 (34%), Positives = 495/903 (54%), Gaps = 65/903 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY +KS +P+ ++FYRMGDFYELF++DA AS L ITLT RG GK IPM G Sbjct: 10 TPMMRQYFGLKSDHPNQMLFYRMGDFYELFYEDAKRASELLDITLTARGHSGGKPIPMAG 69 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H A +YI +L+++G + + EQ+ P +K V R V R+VTPGT++++ L Sbjct: 70 IPFHAAENYIARLVRMGESVVVAEQVGDPATSK-----GPVERQVARIVTPGTISDEAFL 124 Query: 146 SPTDSNYLMAVARIRTE----WAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFS 200 N L+++A + + + +++D+++G F + + L S++ R+ P E++ S Sbjct: 125 EEKRENLLLSIAHTQRKGLDVFGFSYLDMASGRFSLFEVDGFEALASELQRLSPMEVLIS 184 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 E + TL FD+ S ++ +N + FG +Q A+ Sbjct: 185 EDFPARDTI-----TLEKGVCELGPWHFDYESSYRQLIQQFNTKDLSGFGCEAQTAAIAS 239 Query: 261 AAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A A+ Y K TQ P I E +T+ ID A R NLEI + L+G++ +L+ +D Sbjct: 240 AGALLQYAKDTQRSALPHIQSISVEQRDATVLIDGATRKNLEIDQNLTGTQTNTLVSVLD 299 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 T G RL + +P+ +++ R ++ ++ + + +LK D+ R LS Sbjct: 300 TCATPMGSRLLKRWLHTPIRQLDELHQRQSAVKA-LKEGFGYDLLLPLLKQVGDLERILS 358 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ + P+D+ +R + S I L L + + L +++ + P + TL L Sbjct: 359 RVALRSARPRDLLRLRFALESFPEI-RLILDSLQDQRLESLYKRIIEQP-VIANTLVRAL 416 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 ++ P+ RDGG G DA LDE SL + +A L+ E T I++LK+ +N Sbjct: 417 VENPPSVIRDGGIFDTGYDAELDELISLSTNATDYLAELERSEKERTGIQSLKVGYNRVH 476 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IE+ S L D+ + +I RQT+ N RF T EL + E++ +A + AL E Sbjct: 477 GYYIEI-----SRLHSDMAPVE-YIRRQTLKNAERFITPELKEFEDKALSAKSKALAREK 530 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 + +E L + + E L +SQ +A +D+ + A A+ ++ P + N+ ++ GRH Sbjct: 531 QLYEGLLDQLNEVLGELQTSSQAVAQLDLLTSFAERAERLSFHCPELHNNGGISIQAGRH 590 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE + S PFI ND +L N + S L ++TGPNMGGKST++RQ A+I ++A Sbjct: 591 PVVESVI----SDPFIPNDLEL---NRQRS--LLMITGPNMGGKSTYMRQVAIITLLAHT 641 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPA A I +VD++F+R+GS+D+LA GRSTFMVEM ETA+ILN A+ S V++DE+G Sbjct: 642 GSFVPAQKASISVVDRIFTRMGSSDDLAGGRSTFMVEMTETANILNNASKDSLVLMDEVG 701 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGT+T DGLS+AW+ +EYL +C L ATH+ ELT L++ L + N L ++ + I Sbjct: 702 RGTSTFDGLSLAWSAVEYLANQLKCYVLFATHYFELTTLAEQLPQAANVHLTATEYEDEI 761 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--------------KLYHH 845 +F+H+V G A SYG+QV +LAG+P +VI A D L E K+ Sbjct: 762 VFMHQVHDGPASQSYGLQVAQLAGVPRSVIGNAKDKLAELESDSPAAKPNTGAVRKIGSD 821 Query: 846 NQKDMRL----------YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 +Q ++ + P++ + KN L E ++ L+LD ++P+ AL LY Sbjct: 822 HQPNIEQSNQIRENPASWQPDLFAEAEKNELK-------EALQELDLDNLTPIDALNALY 874 Query: 896 AVK 898 +K Sbjct: 875 RLK 877 >gi|126175319|ref|YP_001051468.1| DNA mismatch repair protein MutS [Shewanella baltica OS155] gi|166232134|sp|A3D786|MUTS_SHEB5 RecName: Full=DNA mismatch repair protein mutS gi|125998524|gb|ABN62599.1| DNA mismatch repair protein MutS [Shewanella baltica OS155] Length = 856 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 312/888 (35%), Positives = 477/888 (53%), Gaps = 50/888 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 ++L+ TPMMRQY+ +K+ + D L+FYRMGDFYELF+DDA AS LGI+LT RGK G Sbjct: 7 DDLEKHTPMMRQYLTMKAEHHDMLLFYRMGDFYELFYDDAKRASELLGISLTARGKSGGD 66 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H Y+ KL++IG +AICEQI P +K V R VVR+VTPGTL Sbjct: 67 PIPMAGLPYHAVEGYLAKLVQIGQSVAICEQIGDPATSK-----GPVERKVVRIVTPGTL 121 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREII 198 T++ LL N L AV + + + A +D+S+G F I+ + L +++ R +P EI+ Sbjct: 122 TDEALLQERQDNLLAAVYQGKIGFGYATLDVSSGRFVIAELDTRESLEAELQRTNPVEIL 181 Query: 199 FSEKELSHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFG-SF 252 +SE F LG + +P FD+ S + + + FG + Sbjct: 182 YSED----------FGELGLLNGFKGKRRRPEWEFDYDTSIKLLLAQFGTKDLHGFGIAD 231 Query: 253 SQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 +++ AA + Y+K TQ P I R + ++ +D+A R NLE+ + L+G R+ Sbjct: 232 ARLSLQAAGCLMQYVKDTQRTALPHINAITRFNQTDSIVLDAATRRNLELTQNLAGGRDN 291 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 +L +D + T G R+ I PL D I R ++ + + + + LK+ Sbjct: 292 TLAAVLDNTATPMGSRILQRWIHQPLRDPKHIQARQQAVTELL-DTAAHEGLHEQLKALG 350 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEKLKKLPQS 430 D+ R ++RL + P+D A +R + + P +LR + L + P Sbjct: 351 DIERIMARLALRTARPRDFARLRQALGLLPELQKSLSTLSAPHTTQLR---QHLGEFPAE 407 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 + L + D+ P RDGG +R+G ++ LDE R L + + + L+ + E T I Sbjct: 408 -QALLERAIVDNPPMLIRDGGVIREGYNSELDEWRGLSEGASDYLVQLEAREKERTGINT 466 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ +N GY+IEV+ +S + + + RQT+ N+ R+ T EL + E ++ ++ Sbjct: 467 LKVGYNRVHGYYIEVSRLQSSQVPLN------YQRRQTLKNMERYITPELKEYEEKVLSS 520 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 AL +E + +E L + I+ + L ++ A +D+ A A+ Y P + Sbjct: 521 QGKALALEKQLWEQLFDLILPKLHELQAFARAAAELDVLSNFAERAETLGYTCPELSQDI 580 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 ++ GRHP+VE+ S PFIAN L N ++ ++TGPNMGGKST++RQ Sbjct: 581 GVQIEAGRHPVVERV----SQTPFIANPVTL-----HNQRRMLIVTGPNMGGKSTYMRQV 631 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI +MA +G +VPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT Sbjct: 632 ALITLMAHIGCFVPAGRALIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATAS 691 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V++DEIGRGT+T DGLS+AW+ EYL + L ATH+ ELT L + + +N L Sbjct: 692 SLVLMDEIGRGTSTYDGLSLAWSAAEYLAQQVGAMTLFATHYFELTQLPELMAGVYNVHL 751 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM 850 + ++ I F+H V G A SYG+QV LAG+PN VI A L+ E H + Sbjct: 752 DAIEHDDTIAFMHTVQEGAASKSYGLQVAALAGVPNKVIKAAKHKLQQLESRDHQAEGTR 811 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + E N + + K+ +N D ++P AL LY +K Sbjct: 812 TPIQSLLALPEPVENPA------LTKLSSINPDNLTPKQALDLLYELK 853 >gi|167824907|ref|ZP_02456378.1| DNA mismatch repair protein [Burkholderia pseudomallei 9] Length = 893 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 310/895 (34%), Positives = 463/895 (51%), Gaps = 39/895 (4%) Query: 13 SEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTK 72 S+Q E + TPMM+QY+ IKS +PD+LVFYRMGDFYELFF+DA A+R L +TLT+ Sbjct: 11 SKQQLTEAAFSNHTPMMQQYLRIKSEHPDTLVFYRMGDFYELFFEDAEKAARLLDLTLTQ 70 Query: 73 RGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVR 132 RG G I M GVP H Y+ KL+K G AICEQI P +K V R VVR Sbjct: 71 RGASAGTPIKMAGVPHHAVEQYLAKLVKFGESAAICEQIGDPAT-----SKGPVERKVVR 125 Query: 133 LVTPGTLTEDQLLSPTDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTSNHDRLI 186 +VTPGTLT+ LLS +L+A+ + + +AW+++++G +++ D+L Sbjct: 126 VVTPGTLTDAALLSDKSDVFLLALCVGHNKRGVASNIGLAWLNLASGALRLAELAPDQLG 185 Query: 187 SDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTV 246 + + RI P EI+ ++ + +S+ +G + P FD + R+ D + ++ Sbjct: 186 AALERIRPAEILAADGTI-----ESVPAGMGAITRV-PAWHFDIASGTQRLCDQLEVASL 239 Query: 247 DTFGSFSQVEKTAAAAAIS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT 305 D FG+ + AA A+ Y TQ + + E+ + +D + R NLE+ T Sbjct: 240 DGFGAQALTSANGAAGALLIYAAATQGQQLRHVRSLKVENESEYIGLDPSTRRNLELTET 299 Query: 306 LSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP--ILINP 363 L G+ +L +D T G RL + P S R +I + P ++ Sbjct: 300 LRGTESPTLYSLLDTCCTAMGSRLLRHWLHHPPRASVAAQARHQAIGALLDRPPNAGLDS 359 Query: 364 IQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEK 423 ++ L+ DV R RL + P+D++ +RD + + + G +E Sbjct: 360 LRSALRQIADVERITGRLALLSARPRDLSSLRDTFAALPALRERVAEIASNAAALGRLEA 419 Query: 424 LKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 + P L+ ++ + RDGG + G DA LDE R + + + + L+ + Sbjct: 420 ALEPPPGCLDLLTRAIAAEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLETRER 479 Query: 484 EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDL 543 T I NL++++N G++IEVT + D + RQT+ N R+ T EL Sbjct: 480 ARTGISNLRVEYNKVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTF 533 Query: 544 ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCR 603 E++ +A AL E ++ + A++ E + +A +D+ A A A+ ++ Sbjct: 534 EDKALSAQERALARERALYDGVLQALLPHIEGCQRVASGLAELDLLAAFAERARTLDWVA 593 Query: 604 PIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 P + + GRHP+VE ++Q FIANDC L+ KL L+TGPNMGGK Sbjct: 594 PEFTDEIGIEIDQGRHPVVEAQVEQ-----FIANDCALN-----PERKLLLITGPNMGGK 643 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 STF+RQ ALI +MA +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+I Sbjct: 644 STFMRQTALIALMAYVGSYVPAKAARFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAI 703 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLK 783 LN AT S V++DEIGRGT+T DGL++AWA +L NRC L ATH+ ELT L Sbjct: 704 LNDATPHSLVLMDEIGRGTSTFDGLALAWAIARHLLSHNRCYTLFATHYFELTQLPAEFP 763 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY 843 N L + GI+FLH V G A+ SYG+QV +LAG+P VI A L E+ Sbjct: 764 HAANVHLSAVEHGHGIVFLHAVEEGPANQSYGLQVAQLAGVPAPVIRAARKHLAHLEQQS 823 Query: 844 HHN---QKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 Q D+ P + E + +E++ L+ D++ P AL LY Sbjct: 824 AAQATPQLDLFAAPPVVDEPECNEPPAATPHPALERLLELDPDDLKPRDALDLLY 878 >gi|242279428|ref|YP_002991557.1| DNA mismatch repair protein MutS [Desulfovibrio salexigens DSM 2638] gi|242122322|gb|ACS80018.1| DNA mismatch repair protein MutS [Desulfovibrio salexigens DSM 2638] Length = 885 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 306/896 (34%), Positives = 485/896 (54%), Gaps = 48/896 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TPM QY++IK+ +PDSL+F+RMGDFYELFF+DA +A+R L I LT R + +P Sbjct: 4 KKLTPMFEQYMQIKAEHPDSLLFFRMGDFYELFFEDAEIAARELQIALTCRNPNSEDKVP 63 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP H + Y+ +LI+ G+ +A+C+Q+E P + K LV+R V R+ TPGT+ ED Sbjct: 64 MCGVPHHASRAYLSQLIEKGYTVALCDQLEDP-----KQTKGLVKRGVTRVYTPGTVVED 118 Query: 143 QLLSPTDSNYLMAVAR--IRTEWAIAWIDISTGIFK-ISTSNHDRLISDIMRIDPREIIF 199 LS DSNYL A+ ++ +AW+D STG + I + + + L M+I+PRE+I Sbjct: 119 DTLSAKDSNYLAALLWDDAKSVGGLAWMDFSTGQWSGIQSKSENDLWQWAMKINPRELIL 178 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 + + +Y + +A A +F + ++ I + N+ +D+ + + T Sbjct: 179 PQGKTIPGQYGDID---ARIAPAPSAGYFSYKSAKDNILEAQNVADLDSLDLEDKPQLTQ 235 Query: 260 AAAA-ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKT 317 A A ISY+++TQ+ + +G + ++ + +D NLE+ + L G + + +LL Sbjct: 236 ACGALISYLRQTQLQDFDHLGEFKPLNLTKFMILDEVTERNLELFKRLDGKKGKGTLLNV 295 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D +IT GGRL A R+ P + + I ++ FF + L ++++L + D+ R Sbjct: 296 LDKTITPMGGRLLAVRLKQPWRELSPIEHNQRAVTFFHDDDSLRAKVRELLDTVYDLERL 355 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFL---------KNDLPEELRGAVEKLKKLP 428 +R+ +GR PKD +R +++ + ++ L +N + L+ V K + Sbjct: 356 STRVVLGRATPKDFISLRQSLKT-LPPIHFLLHEAVSGADEENQVTPALKTIVNKWDSMT 414 Query: 429 QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 E L L D P +GG + G + LDE L + + +A L K + Sbjct: 415 DVAE-LLEHALVDSPPPVITEGGLFKTGFNEELDELIQLTEHGESTLAELLEKEKNANDL 473 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 LK+ N GY+ E++ + + + F RQT+ N R+ T +L ++E +I Sbjct: 474 PKLKLGFNKVFGYYFEISKAFKGQIP------EYFERRQTLVNSERYITPDLKEMEEKII 527 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 +A++ +E F+ + + + IA ID LA A+ + P I Sbjct: 528 SASDKRKTLEYNLFQKIRENVAGNRSRFVFMADAIAAIDFWQGLAEAARANRWSCPEIHP 587 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 ++++GRHP+VE Q + +I N + ++ L+TGPNM GKST LR Sbjct: 588 GMEVVIEEGRHPVVEAV---QGAANYIPNSLTID-----EKRRILLITGPNMAGKSTVLR 639 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q AL+ IMAQ+GSY+PA+ IG++D++FSRVG++DNLA G+STFMVEM+ETA IL QA+ Sbjct: 640 QVALMGIMAQIGSYIPATSGRIGLMDRVFSRVGASDNLAQGQSTFMVEMMETARILRQAS 699 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFH 786 +S VILDEIGRGT+T DGL++AWA +E L + R R L ATH+HELT L + Sbjct: 700 KRSLVILDEIGRGTSTFDGLALAWAVVEELSKRARGGIRTLFATHYHELTSLEGVIDGLR 759 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN 846 N + V + I+FL +++PG AD SYGI+V KLAG+P V+ RA +IL E+ Sbjct: 760 NFNIAVREWKGDILFLRRLVPGPADKSYGIEVAKLAGVPKPVVVRAREILANLEEKSQDM 819 Query: 847 QKDMRLYYPEIQ--------TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 P +Q T KN D +++++ L+++ +SP+ AL L Sbjct: 820 DGQPARQAPSVQSILPGMICTGNEKNEAPPEDHALIKELRNLDVNGLSPIEALTLL 875 >gi|271499518|ref|YP_003332543.1| DNA mismatch repair protein MutS [Dickeya dadantii Ech586] gi|270343073|gb|ACZ75838.1| DNA mismatch repair protein MutS [Dickeya dadantii Ech586] Length = 852 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 309/890 (34%), Positives = 483/890 (54%), Gaps = 54/890 (6%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E+L + TPMM+QY+++K+ +PD L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ESLDAHTPMMQQYLKLKAQHPDILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H +Y+ +L+++G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGVPHHAVENYLARLVQLGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFK-ISTSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F+ + + + + +++ R +P E++ Sbjct: 120 SDEALLQEKQDNLLAAIWQENRGFGYATLDISSGRFRLVEPVDKETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 + E E SL E + +P F+ + ++ + + FG +++ Sbjct: 180 YPET----FEAMSLIEHRHGLR-RRPLWEFELDTARQQLNLQFGTRDLTGFGVEQARLGL 234 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA + Y K TQ + P I E Q + +D+A R NLE+ + LSG + +L Sbjct: 235 RAAGCLLQYAKDTQRTSLPHIRGITMERQQDGIIMDAATRRNLELTQNLSGGVDNTLASV 294 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D ++T G R+ + +P+ D+ + R +I + P L+ D+ R Sbjct: 295 LDCTVTAMGSRMLKRWLHAPIRDTQVLLQRQQAIGALQDTATELQPF---LRQVGDLERI 351 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTL 435 L+RL + P+D+A +R + +I L + + ++LR ++ +L LE+ + Sbjct: 352 LARLALRSARPRDLARMRHAFQQLPDIHALLETVNAEAVQQLRASIGHFDELRDLLERAV 411 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + P RDGG + G + LDE R L D + + L+++ E I LK+ Sbjct: 412 V----ETPPVLVRDGGVIASGYNDELDEWRMLADGASDYLDKLEIRERERLGIDTLKVGF 467 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+I+V+ + ++ + ++ RQT+ N R+ EL + E+++ + AL Sbjct: 468 NGVHGYYIQVSRGQSHLVPMN------YVRRQTLKNAERYIIPELKEYEDKVLTSKGKAL 521 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E +E L + ++ L ++ +A +D+ LA A NY P + + + Sbjct: 522 ALEKALYEGLFDLLLPHLAELQQSASALAELDVLSNLAERADTLNYVCPTLSDKPGIRIS 581 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ L S+PFIAN LS +L ++TGPNMGGKST++RQ ALIV+ Sbjct: 582 GGRHPVVERVL----SEPFIANPLSLSPQR-----RLLIITGPNMGGKSTYMRQAALIVL 632 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +A +GSYVPA A IG VD++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V++ Sbjct: 633 LAHIGSYVPAEQAVIGPVDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEHSLVLM 692 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA E L + L ATH+ ELT+L + ++ N L + Sbjct: 693 DEIGRGTSTYDGLSLAWACAEALANNIKAMTLFATHYFELTNLPEKMEGVINIHLDALEH 752 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH------NQKD 849 + I F+H V G A SYG+ V LAG+P VI RA LK E L H + Sbjct: 753 GDTIAFMHSVQEGAASKSYGLAVAALAGVPKEVIKRARQKLKELESLAGHASASHVDGSQ 812 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + L PE + +E ++ ++ D ++P AL LY +K Sbjct: 813 LALLTPEEPSPA------------LEALESIDPDALTPRQALDWLYKLKG 850 >gi|242240373|ref|YP_002988554.1| DNA mismatch repair protein MutS [Dickeya dadantii Ech703] gi|242132430|gb|ACS86732.1| DNA mismatch repair protein MutS [Dickeya dadantii Ech703] Length = 854 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 310/889 (34%), Positives = 488/889 (54%), Gaps = 50/889 (5%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 ++++L TPMM+QY+++K+ +PD L+FYRMGDFYELF+DDA AS+ + I+LTKRG Sbjct: 5 IDKDLSDHTPMMQQYLKLKAQHPDILLFYRMGDFYELFYDDAKRASQLMDISLTKRGASA 64 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G+ IPM GVP H +Y+ KL+ +G +AICEQI P +K V R VVR+VTPG Sbjct: 65 GEPIPMAGVPHHAVENYLAKLVSLGESVAICEQIGDPAT-----SKGPVERKVVRIVTPG 119 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPRE 196 T++++ LL N L A+ + + A +DIS+G F+++ ++ + + +++ R +P E Sbjct: 120 TISDEALLQEKQDNLLAAIWQDGKGFGYATLDISSGRFQLAEPADRETMAAELQRTNPAE 179 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 +++ E + E L E + +P F+ + ++ + + FG S++ Sbjct: 180 LLYPE----NFEAMPLIEHRHGLR-RRPLWEFELDTARQQLNLQFGTRDLTGFGVEQSRM 234 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA + Y K TQ + P I E Q + +D+A R NLE+ + LSG E +L Sbjct: 235 GLRAAGCLLQYAKDTQRTSLPHIRSITMERQQDGIIMDAATRRNLELTQNLSGGTENTLA 294 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D ++T G R+ + P+ D+ + R ++ +Q+ + + +Q L+ D+ Sbjct: 295 AVLDRTVTPMGSRMLKRWLHMPVRDAHLLMQRQQAVGA-LQD--IAHELQPFLRQIGDLE 351 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R L+RL + P+D+A +R + +I L + D+ + +R ++ + L L Sbjct: 352 RILARLALRTARPRDLARMRHAFQQLPDIHALLARVDV-DFIRQRDAQIGQF-DDLRALL 409 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + + P RDGG + G + LDE R L D + + L+++ E I LK+ Sbjct: 410 ERAIIESPPVLVRDGGVIASGYNEELDEWRRLADGASDYLDKLEIRERERLGIDTLKVGF 469 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+I+V+ + ++ + ++ RQT+ N R+ EL + E+++ + AL Sbjct: 470 NGVHGYYIQVSRGQSHLVPMN------YVRRQTLKNAERYIIPELKEYEDKVLTSKGKAL 523 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E ++ L + ++ L ++ +A +D+ LA A NY P + + + Sbjct: 524 ALEKALYDELFDLLLPHLAELQQSASALAELDVLANLAERADTLNYVCPTLSDKPGIRIT 583 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ L S+PFIAN LS +L ++TGPNMGGKST++RQ ALIV+ Sbjct: 584 GGRHPVVEQVL----SEPFIANPLSLSPQR-----RLLIITGPNMGGKSTYMRQAALIVL 634 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MA +GSYVPA A IG VD++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V++ Sbjct: 635 MAHIGSYVPAEQASIGPVDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEHSLVLM 694 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA E L + L ATH+ ELT+L + ++ N L + Sbjct: 695 DEIGRGTSTYDGLSLAWACAETLANKIKAMTLFATHYFELTNLPEKMEGVVNIHLDALEH 754 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH------NQKD 849 E I F+H V G A SYG+ V LAG+P VI RA LK E L H + Sbjct: 755 GETIAFMHSVQDGAASKSYGLAVAALAGVPKDVIKRARQKLKELESLAGHASSSHVDGSQ 814 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L PE + VE ++ ++ D ++P AL+ LY +K Sbjct: 815 LALLSPEEPSPA------------VEALESIDPDSLTPRQALEWLYKLK 851 >gi|237800178|ref|ZP_04588639.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023035|gb|EGI03092.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. oryzae str. 1_6] Length = 859 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 309/881 (35%), Positives = 482/881 (54%), Gaps = 34/881 (3%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L S TPMM+QY ++K+ + D L+FYRMGDFYE+F++DA A++ L ITLT RG+ G+ Sbjct: 7 DLSSHTPMMQQYWKLKNQHLDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQS 66 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCG+P H A Y+ KL+K+G + ICEQI P +K V R VVR++TPGT++ Sbjct: 67 IPMCGIPYHAAEGYLAKLVKLGESVVICEQIGDPATSK-----GPVDRQVVRIITPGTIS 121 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIF 199 ++ LL N + AV + +A +DI++G F + + L++++ RI+P E++ Sbjct: 122 DEALLDERRDNLIAAVLGDERLFGLAVLDITSGNFSVLEIKGWENLLAELERINPVELLI 181 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 + + L A + F+ + + ++ + FG + Sbjct: 182 PDDW-----PQGLPAEKRRGARRRAPWDFERDSAHKSLCQQFSTQDLKGFGCENLTLAIG 236 Query: 260 AAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA + Y K+TQ P + E + T+ +D+A R NLE+ LSG R+ +L + Sbjct: 237 AAGCLLGYAKETQRTALPHLRSLRHERLDDTVILDAATRRNLELDINLSGGRDNTLQSVM 296 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D T G RL + PL D + R SI F+ +Q LK D+ R L Sbjct: 297 DRCQTAMGTRLLTRWLNRPLRDLPILQARQTSIACFLDR-YRFEHLQPQLKEIGDIERIL 355 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 +R+ + P+D+A +RD + + + D P L+ + P+ L L Sbjct: 356 ARIGLRNARPRDLARLRDALSALPELQKAMADLDTPH-LQQLAQTASTYPE-LADLLQRA 413 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + D+ P RDGG L+ G DA LD+ +SL + + + + L+ + T + NLK+ +N Sbjct: 414 IIDNPPAVIRDGGVLKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLANLKVGYNRV 473 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GYFIE+ S A D +I RQT+ RF T EL + E++ +A + AL E Sbjct: 474 HGYFIELPSKQAEQAPPD------YIRRQTLKGAERFITPELKEFEDKALSAKSRALARE 527 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 +E L +I L + + +A +D+ LA A + P ++ GR Sbjct: 528 KMLYEALLEDLIGHLAPLQDTAGALAELDVLSNLAERALNLDLNCPRFVTEPCMRIEQGR 587 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ L S PF+AND L +S ++ ++TGPNMGGKST++RQ ALIV++A Sbjct: 588 HPVVEQVL----STPFVANDLALD-----DSTRMLVITGPNMGGKSTYMRQTALIVLLAH 638 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V++DE+ Sbjct: 639 IGSFVPAASCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEV 698 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGLS+AWA E L + R L ATH+ ELT L +S +N L ++ NE Sbjct: 699 GRGTSTFDGLSLAWAAAECLAQL-RAYTLFATHYFELTVLPESEPLVNNVHLNATEHNER 757 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL-YHHNQKDMRLYYPEI 857 I+FLH+V+PG A SYG+ V +LAG+P VI+RA + L+ E H Q + P I Sbjct: 758 IVFLHRVLPGPASQSYGLAVAQLAGVPGKVITRAKEHLQRLETTSLPHEQPRAKPGKPAI 817 Query: 858 QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + + ++++ + +D+++P AL LY ++ Sbjct: 818 --PQQSDMFASLPHPVLDELSKIKVDDLTPRQALDLLYTLQ 856 >gi|226198830|ref|ZP_03794393.1| DNA mismatch repair protein MutS [Burkholderia pseudomallei Pakistan 9] gi|225928930|gb|EEH24954.1| DNA mismatch repair protein MutS [Burkholderia pseudomallei Pakistan 9] Length = 893 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 310/895 (34%), Positives = 463/895 (51%), Gaps = 39/895 (4%) Query: 13 SEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTK 72 S+Q E + TPMM+QY+ IKS +PD+LVFYRMGDFYELFF+DA A+R L +TLT+ Sbjct: 11 SKQQLTEAAFSNHTPMMQQYLRIKSEHPDTLVFYRMGDFYELFFEDAEKAARLLDLTLTQ 70 Query: 73 RGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVR 132 RG G I M GVP H Y+ KL+K G AICEQI P +K V R VVR Sbjct: 71 RGASAGTPIKMAGVPHHAVEQYLAKLVKFGESAAICEQIGDPAT-----SKGPVERKVVR 125 Query: 133 LVTPGTLTEDQLLSPTDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTSNHDRLI 186 +VTPGTLT+ LLS +L+A+ + + +AW+++++G +++ D+L Sbjct: 126 VVTPGTLTDAALLSDKSDVFLLALCVGHNKRGVASNIGLAWLNLASGALRLAELAPDQLG 185 Query: 187 SDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTV 246 + + RI P EI+ ++ + +S+ +G + P FD + R+ D + ++ Sbjct: 186 AALERIRPAEILAADGTI-----ESVPAGMGAITRV-PAWHFDIASGTQRLCDQLEVASL 239 Query: 247 DTFGSFSQVEKTAAAAAIS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT 305 D FG+ + AA A+ Y TQ + + E+ + +D + R NLE+ T Sbjct: 240 DGFGAQALTSANGAAGALLIYAAATQGQQLRHVRSLKVENESEYIGLDPSTRRNLELTET 299 Query: 306 LSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP--ILINP 363 L G+ +L +D T G RL + P S R +I + P ++ Sbjct: 300 LRGTESPTLYSLLDTCCTAMGSRLLRHWLHHPPRASVAAQARHQAIGALLDAPPNAGLDS 359 Query: 364 IQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEK 423 ++ L+ DV R RL + P+D++ +RD + + + G +E Sbjct: 360 LRSALRQIADVERITGRLALLSARPRDLSSLRDTFAALPALRERVAEIASNAAALGRLEA 419 Query: 424 LKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 + P L+ ++ + RDGG + G DA LDE R + + + + L+ + Sbjct: 420 ALEPPPGCLDLLTRAIAAEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLETRER 479 Query: 484 EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDL 543 T I NL++++N G++IEVT + D + RQT+ N R+ T EL Sbjct: 480 ARTGISNLRVEYNKVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTF 533 Query: 544 ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCR 603 E++ +A AL E ++ + A++ E + +A +D+ A A A+ ++ Sbjct: 534 EDKALSAQERALARERALYDGVLQALLPHIEGCQRVASGLAELDLLAAFAERARTLDWVA 593 Query: 604 PIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 P + + GRHP+VE ++Q FIANDC L+ KL L+TGPNMGGK Sbjct: 594 PEFTDEIGIEIDQGRHPVVEAQVEQ-----FIANDCALN-----PERKLLLITGPNMGGK 643 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 STF+RQ ALI +MA +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+I Sbjct: 644 STFMRQTALIALMAYVGSYVPAKAARFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAI 703 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLK 783 LN AT S V++DEIGRGT+T DGL++AWA +L NRC L ATH+ ELT L Sbjct: 704 LNDATPHSLVLMDEIGRGTSTFDGLALAWAIARHLLSHNRCYTLFATHYFELTQLPAEFP 763 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY 843 N L + GI+FLH V G A+ SYG+QV +LAG+P VI A L E+ Sbjct: 764 HAANVHLSAVEHGHGIVFLHAVEEGPANQSYGLQVAQLAGVPAPVIRAARKHLAHLEQQS 823 Query: 844 HHN---QKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 Q D+ P + E + +E++ L+ D++ P AL LY Sbjct: 824 AAQATPQLDLFAAPPVVDEPECNEPPAATPHPALERLLELDPDDLKPRDALDLLY 878 >gi|254495018|ref|ZP_01053401.2| DNA mismatch repair protein MutS [Polaribacter sp. MED152] gi|213690600|gb|EAQ42829.2| DNA mismatch repair protein MutS [Polaribacter sp. MED152] Length = 860 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 308/880 (35%), Positives = 497/880 (56%), Gaps = 39/880 (4%) Query: 29 MRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPV 88 M+QY IK PD+++ +R+GDFYE F DDA A++ LGITLTKRG + + G P Sbjct: 1 MKQYNAIKIKFPDAMLLFRVGDFYETFGDDAKKAAQVLGITLTKRGAGSDSETALAGFPH 60 Query: 89 HTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPT 148 H+ N Y+ KL+K G R+AIC+Q+E P + K++V+R V LVTPG D++L Sbjct: 61 HSLNTYLPKLVKAGMRVAICDQLEDP-----KMTKTIVKRGVTELVTPGVSLNDEVLQSK 115 Query: 149 DSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHAE 208 +N+L +V + + I+++D+STG + ++ + + + P E++ ++ + + Sbjct: 116 SNNFLASVHFDKKQLGISFLDVSTGEYLVAQGTAEYIDKLLQNFSPSEVLVQKQ--NKQQ 173 Query: 209 YKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK--TAAAAAISY 266 + LFE V+ E+ + +++ + T+ FG ++ AA A + Y Sbjct: 174 FLELFENRYYTFYLDDWVYQKEYAHET-LQNHFKVKTLKGFG-IQDLKNGIIAAGAVLYY 231 Query: 267 IKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAG 326 + +TQ I R + +++D NLE L + +LL ID +I+ G Sbjct: 232 LSETQHNQLKHIQNISRIAEDNYVWMDRFTVRNLE-LYNPNSVNAVTLLDVIDKTISPMG 290 Query: 327 GRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRG 386 GRL +A PL + +I R + + FFI + + LK D+ R +S++ G+ Sbjct: 291 GRLLKRWLALPLKNIDEIKNRHELVKFFIDSDEFSQTVTYQLKQISDLERLISKVATGKA 350 Query: 387 EPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM---LSDDL 443 P++I +++D +++ + I KN+ + AV+ L K + E +S + L D+ Sbjct: 351 SPREIVLLKDSLKAILPI-----KNEAEKSKNKAVQNLGKQLHTCEDLISKISETLFDEA 405 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P G + + LD+ R++ K+ + + + E T I +LKI NN GY+I Sbjct: 406 PVNINKGNAIANNVHQELDDLRAISSSGKQFLDDMLTRETEATGITSLKIAFNNVFGYYI 465 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EV ++ KD + +++I +QT+ + R+ T EL + E +I A +E E F Sbjct: 466 EVRNTH-----KD-KVPEQWIRKQTLVSAERYITEELKEYETKILGAEEKIAKLEQEIFS 519 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L II+ + + +Q+IA ID ++ ++LA + NY RPI+D ST+ +K+GRHP++E Sbjct: 520 KLLQYIIQFVDVVQENAQIIAKIDCLLSFSVLAVDNNYVRPIMDESTDLEIKNGRHPVIE 579 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 K L + +IAND L ++N ++ ++TGPNM GKS LRQ ALIV++AQMG YV Sbjct: 580 KQLP--IDQTYIANDVVL----NRNQQQIIMITGPNMSGKSAILRQTALIVLLAQMGCYV 633 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA A IGIVDK+F+RVG++DN++ G STFMVEM ETASILN + +S ++LDEIGRGT+ Sbjct: 634 PAQNAKIGIVDKIFTRVGASDNISMGESTFMVEMNETASILNNVSERSLILLDEIGRGTS 693 Query: 744 TLDGLSIAWATIEYLHE-TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFL 802 T DG+SIAWA E+LHE + + L ATH+HEL +++ + +R N + V + + IIFL Sbjct: 694 TYDGISIAWAISEFLHEHPTKAKTLFATHYHELNEMTTTFERIKNFNVSVKELEDNIIFL 753 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKES 862 K++ G ++HS+GI V KLAG+PN VI RA IL EK ++ D++ + Q +E Sbjct: 754 RKLVSGGSNHSFGIHVAKLAGMPNMVIHRANKILAQLEK--NNKNDDVKDVLKQTQHEEM 811 Query: 863 KNNLSKNDKLFVEKIK----CLNLDEMSPLTALKTLYAVK 898 + + + D +E I+ N+D ++P+ AL L +K Sbjct: 812 QLSFFQLDDPLLENIREEILATNIDTLTPIEALMKLNEIK 851 >gi|217972428|ref|YP_002357179.1| DNA mismatch repair protein MutS [Shewanella baltica OS223] gi|254766636|sp|B8E8U0|MUTS_SHEB2 RecName: Full=DNA mismatch repair protein mutS gi|217497563|gb|ACK45756.1| DNA mismatch repair protein MutS [Shewanella baltica OS223] Length = 856 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 312/888 (35%), Positives = 477/888 (53%), Gaps = 50/888 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 ++L+ TPMMRQY+ +K+ + D L+FYRMGDFYELF+DDA AS LGI+LT RGK G Sbjct: 7 DDLEKHTPMMRQYLTMKAEHHDMLLFYRMGDFYELFYDDAKRASELLGISLTARGKSGGD 66 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H Y+ KL++IG +AICEQI P +K V R VVR+VTPGTL Sbjct: 67 PIPMAGLPYHAVEGYLAKLVQIGQSVAICEQIGDPATSK-----GPVERKVVRIVTPGTL 121 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREII 198 T++ LL N L AV + + + A +D+S+G F I+ + L +++ R +P EI+ Sbjct: 122 TDEALLQERQDNLLAAVYQGKIGFGYATLDVSSGRFVIAELDTRESLEAELQRTNPVEIL 181 Query: 199 FSEKELSHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFG-SF 252 +SE F LG + +P FD+ S + + + FG + Sbjct: 182 YSED----------FGELGLLNGFKGKRRRPEWEFDYDTSIKLLLAQFGTKDLHGFGIAD 231 Query: 253 SQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 +++ AA + Y+K TQ P I R + ++ +D+A R NLE+ + L+G R+ Sbjct: 232 ARLSLQAAGCLMQYVKDTQRTALPHINAITRFNQTDSIVLDAATRRNLELTQNLAGGRDN 291 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 +L +D + T G R+ I PL D I R ++ + + + + LK+ Sbjct: 292 TLAAVLDNTATPMGSRMLQRWIHQPLRDPKHIKARQQAVTELL-DTAAHEGLHEQLKALG 350 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEKLKKLPQS 430 D+ R ++RL + P+D A +R + + P +LR + L + P Sbjct: 351 DIERIMARLALRTARPRDFARLRQALGLLPELQQSLSTLSAPHTTQLR---QHLGEFPAE 407 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 + L + D+ P RDGG +R+G ++ LDE R L + + + L+ + E T I Sbjct: 408 -QALLERAIVDNPPMLIRDGGVIREGYNSELDEWRGLSEGASDYLVQLEAREKERTGINT 466 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ +N GY+IEV+ +S + + + RQT+ N+ R+ T EL + E ++ ++ Sbjct: 467 LKVGYNRVHGYYIEVSRLQSSQVPLN------YQRRQTLKNMERYITPELKEYEEKVLSS 520 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 AL +E + +E L + I+ + L ++ A +D+ A A+ Y P + Sbjct: 521 QGKALALEKQLWEQLFDLILPKLHELQAFARAAAELDVLSNFAERAETLGYTCPELSQDI 580 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 ++ GRHP+VE+ S PFIAN L N ++ ++TGPNMGGKST++RQ Sbjct: 581 GVQIEAGRHPVVERV----SQTPFIANPVTL-----HNQRRMLIVTGPNMGGKSTYMRQV 631 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI +MA +G +VPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT Sbjct: 632 ALITLMAHIGCFVPADCALIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATAS 691 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V++DEIGRGT+T DGLS+AW+ EYL + L ATH+ ELT L + + +N L Sbjct: 692 SLVLMDEIGRGTSTYDGLSLAWSAAEYLAQQVGAMTLFATHYFELTQLPELMAGVYNVHL 751 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM 850 + ++ I F+H V G A SYG+QV LAG+PN VI A L+ E H + Sbjct: 752 DAIEHDDTIAFMHAVQEGAASKSYGLQVAALAGVPNKVIKAAKHKLQQLESRDHQAEGTR 811 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + E N + + K+ +N D ++P AL LY +K Sbjct: 812 TPIQSLLALPEPVENPA------LTKLSSINPDNLTPKQALDLLYELK 853 >gi|160933107|ref|ZP_02080496.1| hypothetical protein CLOLEP_01950 [Clostridium leptum DSM 753] gi|156868181|gb|EDO61553.1| hypothetical protein CLOLEP_01950 [Clostridium leptum DSM 753] Length = 873 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 296/823 (35%), Positives = 470/823 (57%), Gaps = 28/823 (3%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM+QY +IK+ N +++F+R+GDFYE+FFDDA+LAS+ L +TLT R K PMCG Sbjct: 5 SPMMQQYQKIKAENQGAILFFRLGDFYEMFFDDAVLASKELELTLTARDCGQNKKAPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H++ YI +LI G+++AICEQ+E P AK LV+R+++R+VTPGT+ E +L Sbjct: 65 VPYHSSESYIARLISKGYKVAICEQMEDPALAK-----GLVKRDIIRVVTPGTVLEGSML 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD---RLISDIMRIDPREIIFSEK 202 +N++ ++ I I + DISTG ++ + D +++++ R PREI+ + Sbjct: 120 DEGKNNFICSIYAIGDHAGICFCDISTGELYSTSLDKDLENEILNELGRFSPREILIGGE 179 Query: 203 ELSHAEYKSLF-ETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 ++ + + L + + F+ + + + T+D G Q + +A Sbjct: 180 TVNMKKLAPFIRDKLSACVEMREDAEFELETCRRTVLEQFKKETLDDLGMEGQDQAVSAL 239 Query: 262 AAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTID 319 A+ +Y+K TQ I E + ID R NLE+L T+ ++ SLL +D Sbjct: 240 GALLNYLKDTQRKVPLKINRIENYTQAQFMGIDLNTRRNLELLETMRNKEKRGSLLWVLD 299 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL I PL KI R +++ +P L + L D+ R ++ Sbjct: 300 QTKTAMGKRLLRTWIEQPLLSCGKIIRRQNAVEELYCDPFLCGNLADQLTGVFDLQRLIT 359 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G +++ + I + L L+N E L+ E L L + + + + Sbjct: 360 RIVYGTANGRELRSLSATI-GLLPELKKMLENRKSELLQSIYEDLDTL-EDVHDLIEGSI 417 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 DD P R+GG +R+G + +DE R K +A+++ + E+T I L++ +N Sbjct: 418 VDDPPFSVREGGIIREGYNQEVDELRKDMTGGKDYVAAIEKREREKTGIPKLRVGYNRVF 477 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY++EVT+S KD + D +I +QT++N R+ T EL DLE RI A + + +E Sbjct: 478 GYYLEVTNSY-----KD-QVPDSYIRKQTLTNCERYVTQELKDLEGRILGAKDRCVQLEY 531 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 F+ + + Q E + S IA +D+ + A +A + YCRP ++ S ++K+ RH Sbjct: 532 RLFDDIRTTVSAQQERVQKTSNAIAQLDVLCSFARVAVKNQYCRPEVNLSGKIVLKESRH 591 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE + PF+ ND L D++ ++ ++TGPNM GKST++RQ ALI +MAQ+ Sbjct: 592 PVVELL---SDASPFVPNDALL----DQDENRVLVITGPNMAGKSTYMRQIALIALMAQL 644 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPA+ A IG+VD++F+RVG++D+LASG+STFMVEM E A IL +AT+ S ++LDEIG Sbjct: 645 GSFVPAASAEIGLVDQIFTRVGASDDLASGQSTFMVEMNEVADILKRATSNSLLVLDEIG 704 Query: 740 RGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 RGT+T DG+SIA A +E++ + + + L ATH+HELT++ + + N ++ V + Sbjct: 705 RGTSTFDGMSIARAVLEFVVDKRKLGAKTLFATHYHELTEMEELMDGVKNYSIAVKKRGD 764 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 I FL ++I G AD SYGI+V KLAGLP VI+RA +LK E Sbjct: 765 DITFLRRIIRGGADDSYGIEVAKLAGLPQPVINRAKQVLKELE 807 >gi|300088042|ref|YP_003758564.1| DNA mismatch repair protein MutS [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527775|gb|ADJ26243.1| DNA mismatch repair protein MutS [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 852 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 311/879 (35%), Positives = 486/879 (55%), Gaps = 39/879 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K+ TP+ QY+ IK P+++VF+R+GDFYE F DA +R L I LT R G +P Sbjct: 4 KAVTPLRSQYLSIKRRYPEAIVFFRLGDFYETFDTDAETTARELEIVLTAREMGKGVKVP 63 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M G+P H ++Y+ +LI GH++AICEQ P + K LV R VVR+VTPGT+ E Sbjct: 64 MAGIPYHAVDNYLARLIARGHKVAICEQTTRPGD-----QKGLVEREVVRMVTPGTVIEP 118 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK 202 LL +NYL AV +A++DISTG F + RL +++ R+ P EI+ +E Sbjct: 119 NLLDGRRNNYLAAVTADDETAGLAYVDISTGEFAATELPRARLSAELERLQPAEILLAEN 178 Query: 203 ELSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 F+ G + ++ P+ F+ + + + + T++ FG S T +A Sbjct: 179 --------GSFQPDGGIPASRLPDREFEPEPAAELLKNELGVATLEGFGLDSLPLATGSA 230 Query: 262 AAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILR-TLSGSREQSLLKTID 319 A+ +Y+K+T ++G+P + +D +NLEI R +G SLL +D Sbjct: 231 GAVVAYLKQTHKEVISSLGHPSVYRTAEFMALDDNTVTNLEIFRNATTGETAGSLLGVLD 290 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 ++T G RL + PL ++ I R DS+ + I+ +LK D+ R ++ Sbjct: 291 VTVTTMGARLLRRWLGQPLLEAETIRKRQDSVAWLYHRHAERADIRHLLKGFADLERVIN 350 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R++ +P++I ++ + ++ + ++R ++ L + +E L + Sbjct: 351 RVRAFTAQPREIIALKRSLALLPKLVRALGDDPATADIRHGLKDLSVVVSLIETALENEP 410 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + ++ +GG +R G A LDE R L +K IA L+ + T IK+LK +N+ Sbjct: 411 TGNVG----EGGIIRRGFSAELDELRDLAAGAKSHIARLEAEERSATGIKSLKAGYNHVF 466 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY++EV+S++ S + +RFI +QT++N R+ T EL + E RI ++ E Sbjct: 467 GYYLEVSSANLS------QVPERFIRKQTLANAERYITPELKEYEARILSSRERLEATES 520 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 + + + I E +E++ A+ +A +D ALA +A E +Y +P I + ++ GRH Sbjct: 521 DIYRRVLGQIAESAEAILTAAGAVARLDALAALAAVATEHDYVKPEIGEGIDTDIEGGRH 580 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE L FIAND L+ +D+ L +LTGPNM GKST+L+Q ALI +MAQ Sbjct: 581 PVVEAGLPPGR---FIANDTRLTGSDDR----LVILTGPNMAGKSTYLKQTALITLMAQT 633 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPA A IGI D++F+R+G+ ++LA G+STFMVEM+ETA+IL AT++S +ILDEIG Sbjct: 634 GSFVPAGRAVIGITDRIFTRIGAHEDLAGGKSTFMVEMVETANILANATDRSLLILDEIG 693 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGT+T DGL+IA A +EY+H+ R L ATH+HEL L SL+ N + VS+ + Sbjct: 694 RGTSTYDGLAIARAVVEYIHDHIGARTLFATHYHELVGLGDSLEGVRNCNVAVSEDRGEV 753 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 +FLH+++PG D SYGI V KLAGLP VI RA ++L E + P++ Sbjct: 754 VFLHRIVPGGVDRSYGIHVAKLAGLPKAVIRRANEVLLELEARKKSPMPPAKSPAPQLAL 813 Query: 860 KESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + VE ++ L++D +SP AL+ LY +K Sbjct: 814 ------FAPTVSPAVEALRQLDIDALSPRQALEKLYELK 846 >gi|123441129|ref|YP_001005117.1| DNA mismatch repair protein MutS [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166232150|sp|A1JJU1|MUTS_YERE8 RecName: Full=DNA mismatch repair protein mutS gi|122088090|emb|CAL10878.1| DNA mismatch repair protein MutS [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 851 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 313/884 (35%), Positives = 492/884 (55%), Gaps = 45/884 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 + L S TPMM+QY+ +K+ +P+ L+FYRMGDFYELF+ DA AS+ L I+LTKRG G+ Sbjct: 5 DKLDSHTPMMQQYLRLKAQHPEILLFYRMGDFYELFYSDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H+ +Y+ KL+++G AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGVPYHSIENYLAKLVQLGESAAICEQIGDPATSK-----GPVERKVVRIVTPGTV 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F+++ ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDARGFGYATLDISSGRFRVAEPADLETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + E + E SL E + +P F+ ++ ++ + + FG Q + Sbjct: 180 YPE----NFEQMSLIEHRHGLR-RRPLWEFELETAKQQLNLQFGTRDLIGFG-VEQAHQA 233 Query: 259 --AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 AA + Y+K TQ + P I E Q + +D+A R NLE+ + LSG E +L Sbjct: 234 LRAAGCLLQYVKDTQRTSLPHIRGLTMERQQDGIVMDAATRRNLELTQNLSGGTENTLAA 293 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D ++T G R+ + P+ D+ + R +I +Q+ + +Q L+ D+ R Sbjct: 294 ILDCTVTAMGSRMLKRWLHMPIRDTKVLTDRQQAIGG-LQD--ITAELQTPLRQVGDLER 350 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKT 434 L+RL + P+D+A +R + I L ++P + L V + +L LE+ Sbjct: 351 ILARLALRTARPRDLARMRHAFQQLPEIHRLLQPVNVPHIQNLLSQVGQFDELQDLLERA 410 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + + P RDGG + G +A LDE R+L D + + L+++ E+ + LK+ Sbjct: 411 IV----ETPPVLVRDGGVIASGYNAELDEWRALADGATDYLDRLEIREREKLGLDTLKVG 466 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N GY+I+V+ + ++ ++ RQT+ N R+ EL + E+++ + A Sbjct: 467 FNGVHGYYIQVSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSKGKA 520 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L IE +E + + ++ L ++ +A +D+ LA A+ NY P++ + + Sbjct: 521 LAIEKGLYEEIFDLLLPHLPELQTSANALAELDVLANLAERAETLNYNCPVLSDKPGIKI 580 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 GRHP+VE+ L S+PFI+N LS ++ ++TGPNMGGKST++RQ ALIV Sbjct: 581 TGGRHPVVEQVL----SEPFISNPLTLSPQR-----RMLIITGPNMGGKSTYMRQTALIV 631 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++A MGSYVPA A IG VD++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT QS V+ Sbjct: 632 LLAHMGSYVPADQATIGPVDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEQSLVL 691 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 692 MDEIGRGTSTYDGLSLAWACAENLASRIKAMTLFATHYFELTTLPEKMEGVVNVHLDALE 751 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 E I F+H V G A SYG+ V LAG+P VI RA LK E L +N ++ Sbjct: 752 HGETIAFMHSVQDGAASKSYGLAVAALAGVPRDVIKRARQKLKELESL-SNNAAASKIDG 810 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ L++ VE ++ L+ D +SP AL+ +Y +K Sbjct: 811 SQLTL------LNEEVSPAVEALEALDPDSLSPRQALEWIYRLK 848 >gi|148549358|ref|YP_001269460.1| DNA mismatch repair protein MutS [Pseudomonas putida F1] gi|166232127|sp|A5W816|MUTS_PSEP1 RecName: Full=DNA mismatch repair protein mutS gi|148513416|gb|ABQ80276.1| DNA mismatch repair protein MutS [Pseudomonas putida F1] Length = 857 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 308/884 (34%), Positives = 479/884 (54%), Gaps = 38/884 (4%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L TPMM+QY ++K+ +PD L+FYRMGDFYE+F++DA A++ L ITLT RG+ G+ Sbjct: 3 SLSDHTPMMQQYWKLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQS 62 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCG+P H+ Y+ KL+K+G + ICEQI P +K V R VVR++TPGT++ Sbjct: 63 IPMCGIPFHSLEGYLAKLVKLGESVVICEQIGDPAT-----SKGPVERQVVRIITPGTVS 117 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIF 199 ++ LL N + A+ + +A +DI++G F + + L++++ R++P E++ Sbjct: 118 DEALLDERRDNLIAALLGDERLFGLAVLDITSGNFSVQEIKGWENLLAELERLNPVELLI 177 Query: 200 SE---KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 + ++L AE + A + FD + + + + FG Sbjct: 178 PDDWPRDLP-AEKRP-------GARRRAPWDFDRDSARKALCQQFATKDLKGFGCDKLTL 229 Query: 257 KTAAAAA-ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA ++Y K+TQ P + E + T+ +D A+R NLE+ L+G R+ +L Sbjct: 230 AIGAAGCLLTYAKETQRTALPHLRSLRHERLDDTVILDGASRRNLELDINLAGGRDNTLQ 289 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 ID T RL + + PL D + R DSI + + +Q LK D+ Sbjct: 290 SVIDRCQTAMASRLLSRWLNRPLRDLKVLQARQDSIRCLLDS-YRFEKLQPQLKEIGDIE 348 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R L+R+ + P+D+A +RD + + + N + + P R A + L L Sbjct: 349 RILARIGLRNARPRDLARLRDALGALPELQNAMTELEAPHLARLAA--ITGTYPELASLL 406 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + D+ P RDGG L+ G D LDE ++ + + + + L+ + T + NLK+ + Sbjct: 407 ERAIIDNPPAVIRDGGVLKAGYDNELDELLAISENAGQFLIDLEAREKARTGLANLKVGY 466 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GYFIE+ + A D +I RQT+ RF T EL E++ +A + AL Sbjct: 467 NRVHGYFIELPTKQAEQAPGD------YIRRQTLKGAERFITPELKAFEDKALSAKSRAL 520 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 E ++ L +I L +++ +A +D+ LA A + P + ++ Sbjct: 521 AREKMLYDALLETLISHLAPLQDSAAALAELDVLSNLAERALNLDLSCPRFVDEPCLRIE 580 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ L + PF+AND L NS ++ ++TGPNMGGKST++RQ ALIV+ Sbjct: 581 QGRHPVVEQVL----TTPFVANDLGLD-----NSTRMLIITGPNMGGKSTYMRQTALIVL 631 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +A +GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V++ Sbjct: 632 LAHIGSFVPAASCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDRSLVLM 691 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGT+T DGLS+AWA E L + R L ATH+ ELT L +S N L ++ Sbjct: 692 DEVGRGTSTFDGLSLAWAAAERLAQL-RAYTLFATHYFELTVLPESEPLVANVHLNATEH 750 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL-YHHNQKDMRLYY 854 NE I+FLH V+PG A SYG+ V +LAG+P VI RA + L E H Q Sbjct: 751 NERIVFLHHVLPGPASQSYGLAVAQLAGVPTAVIQRAREHLGRLETTSLPHEQPAAHKAK 810 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 Q + + +EK+ L LD+M+P A++ LY +K Sbjct: 811 DAPQVPHQSDLFASLPHPAIEKLGKLQLDDMTPRQAIEMLYQLK 854 >gi|167837123|ref|ZP_02464006.1| DNA mismatch repair protein [Burkholderia thailandensis MSMB43] Length = 889 Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust. Identities = 308/887 (34%), Positives = 467/887 (52%), Gaps = 41/887 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ IK+ +PD+LVFYRMGDFYELFF+DA A+R L +TLT+RG G I M G Sbjct: 20 TPMMQQYLRIKAEHPDTLVFYRMGDFYELFFEDAEKAARLLDLTLTQRGASAGNPIKMAG 79 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H Y+ KL+K G AICEQI P +K V R VVR+VTPGTLT+ LL Sbjct: 80 VPHHAVEQYLAKLVKFGESAAICEQIGDPAT-----SKGPVERKVVRVVTPGTLTDAALL 134 Query: 146 SPTDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 S +L+A+ + + +AW+++++G +++ D+L + + RI P EI+ Sbjct: 135 SDKSDVFLLALCVGHNKRGVASNIGLAWLNLASGALRLAEIAPDQLGAALERIRPAEILA 194 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 ++ + +++ +G + P FD + R+ D + ++D FG+ + + Sbjct: 195 ADGAI-----EAVPAGMGAITRV-PAWHFDIASGTQRLCDQLEVASLDGFGAQALTSASG 248 Query: 260 AAAAIS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA A+ Y TQ + + E+ + +D + R NLE+ TL G+ +L + Sbjct: 249 AAGALLIYAAATQGQQLRHVRSLKVENESEYIGLDPSTRRNLELTETLRGTESPTLYSLL 308 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP--ILINPIQKILKSSPDVPR 376 D T G RL + P S R +I + P + ++ ++ L+ DV R Sbjct: 309 DTCCTAMGSRLLRHWLHHPPRASVAAQARHQAIGALLDAPAHVGLDSLRSALRQIADVER 368 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELR-GAVEKLKKLPQSLEKTL 435 RL + P+D++ +RD + + L + P G ++ + P L Sbjct: 369 ITGRLALLSARPRDLSSLRDTF-AALPALRERVAEIAPNAAALGRLDAALEPPPGCLDLL 427 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + ++ + RDGG + G DA LDE R + + + + L+ + T I NL++++ Sbjct: 428 TRAIAAEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLETRERARTGIPNLRVEY 487 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N G++IEVT + D + RQT+ N R+ T EL E++ +A AL Sbjct: 488 NKVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTFEDKALSAQERAL 541 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 E ++ + A++ E + +A +D+ A A A+ ++ P + + Sbjct: 542 ARERALYDGVLQALLPHIEGCQRVASGLAELDLLAAFAERARTLDWVAPEFTDEIGIEID 601 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE ++Q FIANDC L+ P+ K L L+TGPNMGGKSTF+RQ ALI + Sbjct: 602 QGRHPVVEAQVEQ-----FIANDCALN-PDRK----LLLITGPNMGGKSTFMRQTALIAL 651 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MA +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+ILN AT S V++ Sbjct: 652 MAYVGSYVPAKAARFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILNDATPHSLVLM 711 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGL++AWA +L NRC L ATH+ ELT L + N L + Sbjct: 712 DEIGRGTSTFDGLALAWAIARHLLSHNRCYTLFATHYFELTQLPAEFPQAANVHLSAVEH 771 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN---QKDMRL 852 GI+FLH V G A+ SYG+QV +LAG+P VI A L E+ Q D+ Sbjct: 772 GHGIVFLHAVEEGPANQSYGLQVAQLAGVPAPVIRAARKHLAHLEQQSAAQATPQLDLFA 831 Query: 853 YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 P + E + +E++ L+ D++ P AL LY + A Sbjct: 832 AQPIVDEPECNEPPAATPHPALERLLRLDPDDLKPRDALDLLYELHA 878 >gi|149200634|ref|ZP_01877637.1| DNA mismatch repair protein [Lentisphaera araneosa HTCC2155] gi|149136283|gb|EDM24733.1| DNA mismatch repair protein [Lentisphaera araneosa HTCC2155] Length = 837 Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust. Identities = 301/838 (35%), Positives = 498/838 (59%), Gaps = 50/838 (5%) Query: 26 TPMMRQYIEIK-SINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 TPMMRQY++ K + D+++ +R+GDFYE+FF+DA + +GITLT+R IPM Sbjct: 12 TPMMRQYLDAKEGLTDDTILLFRLGDFYEIFFEDAERGAEIMGITLTRRNS-----IPMA 66 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H ++Y+ ++++ G ++AI EQ+E P K +VRR V R++TPGT+TED + Sbjct: 67 GVPYHALDNYLPRILEHGLKVAIAEQMEDPAT-----TKGIVRRAVTRVITPGTITEDNV 121 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSEKE 203 L + +N+L ++ + + +A++D+STG F+I S+ L +++ R +P E+I +++ Sbjct: 122 LRSSKANFLASLHIGKKKTGLAFLDLSTGNFRILEHSDPHNLEAELHRANPSELIIADE- 180 Query: 204 LSHAEYKSL-FETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFGSFSQVEK-TAA 260 E SL F + +++ P+ FD ++E + ++++TT++ FG +Q + TAA Sbjct: 181 ---IEIDSLPFSLPDSTSISPIPSWQFDSDLTEQVLLKHFSVTTLEGFGCRNQNDAITAA 237 Query: 261 AAAISYIK---KTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLK 316 A + Y+ K + ++G + D + +D ++ LE++ + S+ +L+ Sbjct: 238 GALLDYVLTNLKRSADHITSLGLIQNTD---CMIVDRVSQRTLELVEPIFRDSKNSTLIS 294 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D T G RL E + PLT+ I R D+++ F + +L+ +++ ++ D+ R Sbjct: 295 VLDECSTPMGSRLLREWLLRPLTNIEAITQRQDTLSSFCSDQMLLEELRESFRTVRDIER 354 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSLEKT 434 L+RL +G +++ I +++ +I ++ ++ +DL +++ +L P+ L T Sbjct: 355 ILTRLNLGTANARELQTIAWALKAIPDIESIISYVDSDLLSDIKS---RLFNFPE-LTDT 410 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L L+D+ P +DGG + DG + LD R + K +A + + E T IK LKI Sbjct: 411 LLQALTDEPPATLKDGGIISDGYNDQLDHFRKGSREGKAWLARFEAQEKERTGIKKLKIG 470 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+IE++ +++ +D +I +QT++N R+ T EL ++E+ + A A Sbjct: 471 YNRVFGYYIELSKINSAQAPED------YIRKQTLANAERYITPELKEIEDSVLGAEEKA 524 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 +E E F+ L + E+++ + + + +A +D LA +A +++Y RP + + Sbjct: 525 KALEYELFQELRLKVTEKTKEIQSTAIALAELDCLANLAYVALKRSYIRPQLCEEKKINI 584 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 DGRHP+VE + + F+ ND D+ ND + + L+TGPNM GKST++RQ AL+ Sbjct: 585 SDGRHPVVEAAM---DAGIFVPNDTDM---ND-HQASINLVTGPNMAGKSTYIRQVALLT 637 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMAQMGS++P S A IGI D +++R+G+AD+L+ G+STFMVEM+ETA+ILN A +S VI Sbjct: 638 IMAQMGSFIPCSKAEIGITDSIYTRIGAADDLSRGQSTFMVEMVETANILNNAGPRSLVI 697 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDEIGRGT+T DGLS+AWA E+LH+ C L ATH+HELT L SL + N + V + Sbjct: 698 LDEIGRGTSTYDGLSLAWAIAEHLHDAG-CLTLFATHYHELTKLGASLPKVKNWCVAVHE 756 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL----YHHNQK 848 S IIFLHK+ G AD SYGI V KLAG+P +VI RA +IL+ E + Y N+K Sbjct: 757 SKGKIIFLHKIQAGAADRSYGIYVAKLAGIPKSVIKRADNILQDLEDINGNTYVKNKK 814 >gi|114562239|ref|YP_749752.1| DNA mismatch repair protein [Shewanella frigidimarina NCIMB 400] gi|122300465|sp|Q086A1|MUTS_SHEFN RecName: Full=DNA mismatch repair protein mutS gi|114333532|gb|ABI70914.1| DNA mismatch repair protein MutS [Shewanella frigidimarina NCIMB 400] Length = 861 Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust. Identities = 317/882 (35%), Positives = 483/882 (54%), Gaps = 39/882 (4%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L+ TPMMRQY+ +K+ +PD L+FYRMGDFYELF+DDA AS LGI+LT RGK G Sbjct: 8 DLEKHTPMMRQYLGLKAAHPDMLLFYRMGDFYELFYDDAKRASEMLGISLTARGKSGGDP 67 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM G+P H Y+ KL+ IG +AICEQI P +K V R VVR+VTPGTLT Sbjct: 68 IPMAGIPYHAVEGYLAKLVNIGQSVAICEQIGDPATSK-----GPVERQVVRIVTPGTLT 122 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIF 199 ++ LL N L A+ + +T + A +DIS+G F ++ + L +++ R +P E+++ Sbjct: 123 DEALLQEKQDNLLAALYQGKTGFGYATLDISSGRFVVAELPTREALEAELQRTNPAELLY 182 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKT 258 SE L + + +P FD+ + + + + + FG + +++ Sbjct: 183 SEDFTDML----LINNMKGIR-RRPEWEFDYDTCINLLLNQFGTKDLHGFGITDARLALQ 237 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA + Y+K TQ + P I R + ++ +D+A R NLE+ + LSG RE +L + Sbjct: 238 AAGCLMQYVKDTQKMALPHINSIVRFNQSESIILDAATRRNLELTQNLSGGRENTLAWVL 297 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D + T G R+ I PL + I R +++ I+ L + + LKS D+ R + Sbjct: 298 DNTATPMGSRMLQRWIHEPLRNRQTIQYRHSAVSELIEQD-LYQTLHEQLKSLGDIERIM 356 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 +RL + P+D + ++ + I P L V+ L + P+ L Sbjct: 357 ARLALRSARPRDFSRLKQALTLLPEIQQTLAICQQPR-LNTLVQLLGEFPEQ-HDLLERA 414 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + D+ P RDGG +R G + LDE R L + + + L+ + ++T I LK+ +N Sbjct: 415 IVDNPPMLIRDGGVIRTGYNNELDEWRKLSEGASDYLVELEAREKQQTGINTLKVGYNRV 474 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IEV S L+ D + RQT+ R+ T EL + E ++ ++ AL +E Sbjct: 475 HGYYIEV-----SRLQSD-RVPLSYQRRQTLKGTERYITPELKEYEEKVLSSQGKALALE 528 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + +E L + ++ + + L + A +DI A A+ NY P + + ++ GR Sbjct: 529 KQLWEQLFDLLLPKLQELQQFATAAAELDILSNFAERAELFNYQCPQMSHDIGINIEAGR 588 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ S FIAN L+ ++ ++TGPNMGGKST++RQ ALI +MA Sbjct: 589 HPVVERV----SQAAFIANPVALTPQR-----QMLIVTGPNMGGKSTYMRQVALITLMAH 639 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +G +VPA +A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V++DEI Sbjct: 640 IGCFVPADHAQIGEIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATANSLVLMDEI 699 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGL++AW+ EYL + L ATH+ ELT L + L N L + ++ Sbjct: 700 GRGTSTYDGLALAWSAAEYLAKNVSALTLFATHYFELTQLPELLPSVINVHLDAIEHDDT 759 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 I F+H V G A SYG+QV LAG+P +VI A KL+ +DM L + Sbjct: 760 IAFMHSVQEGAASKSYGLQVAALAGVPASVIKAAK------HKLHQLENRDMTLSQ-QNP 812 Query: 859 TKESKNNLS--KNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 T+ S N L L +EK+ +N DE++P AL LY +K Sbjct: 813 TQVSMNLLPPIPEPSLALEKLAQINPDELTPKQALDYLYELK 854 >gi|45645397|gb|AAS73298.1| DNA mismatch repair protein [Haemophilus influenzae] Length = 860 Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust. Identities = 311/889 (34%), Positives = 494/889 (55%), Gaps = 45/889 (5%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 EEN + TPMM+QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG+ G Sbjct: 4 EENFQQHTPMMQQYLKLKAENPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGQSAG 63 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM G+P + Y+ KL+++G +AICEQI P +K V R +VR+VTPGT Sbjct: 64 QPIPMAGMP-YAVEGYLAKLVQLGESVAICEQIGDP-----STSKGPVERQIVRIVTPGT 117 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N + AV + + ++ +A +D+++G F++ ++ + L +++ RI P E+ Sbjct: 118 VSDEALLPERQDNLIAAVYQEKEKFGLATLDMTSGRFQLCEPADKETLRAELQRIAPVEL 177 Query: 198 IFSEK--ELSHAEY-KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 ++ E+ E++ E+ K L +P F+ S + + + + + FG Sbjct: 178 LYCEEFNEMAAIEHCKGLRR--------RPIWEFELSTAITLLNRQFGTKDLRAFG---- 225 Query: 255 VEKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS 309 VEK+ AA + Y K+TQ P I Q + +D+A R NLE+ + LSG Sbjct: 226 VEKSPLGLSAAGCLLQYAKETQRTALPHIQSISLIQNQDCIQLDAATRRNLELTQNLSGG 285 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 E +L +D +T G RL I P+ D K+ R +I + N L++ +Q L+ Sbjct: 286 TENTLASVLDKCVTPMGSRLLKRWIHQPIRDVEKLKQRQQAIAEIL-NFDLVDELQPYLQ 344 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 D+ R L+R+ + P+D+ +R + I L ++ P L ++ + Sbjct: 345 LVGDMERILARVALRSARPRDLTRLRTTLEQ-IPALRTIVQQKTPSFLTALFSQIADFSE 403 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 + L L + P RDGG + +G + LDE R L + + + + +L+ + E T I Sbjct: 404 QCD-LLQRALIETPPLLIRDGGVIAEGYNTELDEWRMLSNGATQYLENLEKRERESTGID 462 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LKI N GY+I+++ A ++ ++ RQT+ N R+ EL + E+++ Sbjct: 463 TLKIGFNAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKEYEDKVLK 516 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 + +AL +E + ++ L + ++ +L AS ++ +D+ + LA NY P + Sbjct: 517 SKGAALALEKQLYDELFDLLLPHLGALQLASLALSELDVLVNLAERTNTLNYVMPTFCDE 576 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 + +++GRHP+VE+ LK PFIAN +L+ ++ L ++TGPNMGGKST++RQ Sbjct: 577 VSVKIENGRHPVVEQVLK----DPFIANPVELN-----HNRHLLVITGPNMGGKSTYMRQ 627 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI ++A +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT Sbjct: 628 TALITLLAYIGSFVPADNARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATE 687 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 QS V++DEIGRGT+T DGLS+AWA E+L + R L ATH+ ELT L + L+ N Sbjct: 688 QSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLEGIANIH 747 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 L + N I F+H V G A SYG+ V LAG+P +VI A L EK H+ Sbjct: 748 LDALEHNNTIAFMHAVQDGAASKSYGLAVAALAGVPQSVIKLAKQKLTQLEKNSSHSADQ 807 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E + + + E I+ L+ D++SP AL LY +K Sbjct: 808 QIQALREANHNQGELLFEQETDALREAIEKLDPDDLSPKQALAYLYQLK 856 >gi|237744278|ref|ZP_04574759.1| DNA mismatch repair protein mutS [Fusobacterium sp. 7_1] gi|229431507|gb|EEO41719.1| DNA mismatch repair protein mutS [Fusobacterium sp. 7_1] Length = 881 Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust. Identities = 313/891 (35%), Positives = 519/891 (58%), Gaps = 38/891 (4%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TP+M+QY +IK P+ ++ YR+GDFYE+FF+DA +AS+ LG+TLTKR K G+D+ Sbjct: 6 MSADTPLMQQYKKIKEEYPNEILMYRLGDFYEMFFEDAKIASKELGLTLTKRNKEKGQDV 65 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 P+ GVP H+ YI KL++ G+ IAIC+Q+E P A +V+R V R++TPGT+ + Sbjct: 66 PLAGVPYHSVASYIAKLVEKGYSIAICDQVEDPKSAT-----GIVKREVTRVITPGTIID 120 Query: 142 DQLLSPTDSNYLMAVARIRTE--WAIAWIDISTG---IFKISTSNH-DRLISDIMRIDPR 195 L ++NY+ + TE AIA+ DI+TG +F+I N ++ +++I +I Sbjct: 121 VDFLDKNNNNYIACIKINTTENVAAIAYADITTGEFSVFEIKGKNFFEKTLAEINKIQAS 180 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ- 254 EI+ EK +++EY L E + + + +ES + Y++I ++D F S+ Sbjct: 181 EILLDEK--TYSEYIKLLEERISFTGVKFTKVTNVKKAESYLTSYFDIMSIDVFSLKSKD 238 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSL 314 + +A+A + YI + Q N+ E ++I + + ++ + ++NL ++ + + +L Sbjct: 239 LAISASANLLHYIDELQKGNELPFSKIEYKNIDNIMELNISTQNNLNLVPKKNEEAKGTL 298 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D +T G R + I +P D KI R +++F + +L +++ LK D+ Sbjct: 299 LGVLDDCVTSVGSRELKKIIKNPFLDIEKIRQRQFYVDYFYNDVLLRENVREYLKDIYDI 358 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R ++ G KD+ ++D IR + L ++ +E++ ++ K+ + Sbjct: 359 ERIAGKIIYGTENGKDLLSLKDSIRKSLETYRLLKEH---QEIKNILDIDVKILLDIYNK 415 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + ++ + P R+GG ++DG ++ LDE R + K I ++ + E T IK LKIK Sbjct: 416 IELIIDTEAPFSVREGGIIKDGYNSELDELRKISKLGKDFILEIEQRERERTGIKGLKIK 475 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GYFIEVT ++ ++ +D +I +QT+ N R+ +L + E ++ A + Sbjct: 476 YNKVFGYFIEVTKANEHLVPED------YIRKQTLVNSERYIVPDLKEYEEKVITAKSKI 529 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 +E E F+ L++ I E +SL + IA +DI A +A + +Y +P I + Sbjct: 530 EALEYELFKQLTSKIKEHIDSLYKLANRIANLDIVSNFAHIATKNSYVKPEISEEDILEI 589 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 K GRHPIVE + +S ++ ND L +DKN+ L +LTGPNM GKST+++Q AL + Sbjct: 590 KGGRHPIVETLI---ASGTYVKNDIVL---DDKNN--LIILTGPNMSGKSTYMKQVALNI 641 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMA +GSYV A YA I IVDK+F+RVG++D+L +G+STFM+EM E ASILN ATN+SF++ Sbjct: 642 IMAHIGSYVAADYAKIPIVDKIFTRVGASDDLLTGQSTFMLEMTEVASILNNATNKSFIV 701 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDEIGRGT+T DG+SIA A EY+H + + ATH+HELT+L K L+R N ++V + Sbjct: 702 LDEIGRGTSTYDGISIATAITEYIHNNIGAKTIFATHYHELTELEKELERAINFRVEVKE 761 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE---KLYHHNQKDMR 851 + ++FL +++ G AD SYGI+V +L+G+P V++R+ ILK E L + K + Sbjct: 762 DGKNVVFLREIVKGGADKSYGIEVARLSGVPKEVLNRSNKILKKLETRKNLIENKMKAEQ 821 Query: 852 LYYPEIQTKESKNN----LSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + +E LS+N+ +E +K ++L+ +SPL +L L +K Sbjct: 822 MILFGNGFEEENEEEVEILSENESKVLELLKNMDLNSISPLESLLKLNELK 872 >gi|308187917|ref|YP_003932048.1| DNA mismatch repair protein mutS [Pantoea vagans C9-1] gi|308058427|gb|ADO10599.1| DNA mismatch repair protein mutS [Pantoea vagans C9-1] Length = 853 Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust. Identities = 310/885 (35%), Positives = 491/885 (55%), Gaps = 43/885 (4%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 +++ + TPMM+QY+ +K+ +PD L+FYRMGDFYELF+DDA AS+ L I+LTKRG G Sbjct: 6 DKDFSTHTPMMQQYLRLKAEHPDILLFYRMGDFYELFYDDAKRASQLLEISLTKRGASAG 65 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT Sbjct: 66 EPIPMAGVPYHAVEGYLAKLVQLGESVAICEQIGDPALSK-----GPVERKVVRIVTPGT 120 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E+ Sbjct: 121 ISDEALLQERHDNLLAAIVQSPRGFGYATLDISSGRFRLSEPADAETMAAELQRTNPAEL 180 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVE 256 ++ E + SL + + +P F+ + ++ + ++ FG + + Sbjct: 181 LYPED----FQAMSLIDQRRGLR-RRPLWEFEIDTARQQLNLQFGTRDLNGFGVENANLG 235 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 +AA + Y+K TQ P I E Q ++ +D+A R NLEI + L+G + +L Sbjct: 236 LSAAGCLLQYVKDTQRTTLPHIRSLSMERQQDSIIMDAATRRNLEITQNLAGGTDNTLAA 295 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D ++T G R+ + PL D IN R +SI +QN L +Q +L+ D+ R Sbjct: 296 VLDKTVTPMGSRMLKRWLHMPLRDVRIINQRQESIAE-LQN--LSEVLQPVLRQVGDLER 352 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEKLKKLPQSLEKT 434 L+RL + P+D+A +R + + L P+ +LR + + L + LE+ Sbjct: 353 ILARLALRTARPRDLARMRHAFQQLPELNQLLADVKAPQLQKLRTQMGEFTALRELLEQA 412 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + + P RDGG + G +A LDE R+L D + + L+++ E+ + LK+ Sbjct: 413 VI----ESPPVLIRDGGVIAPGYNAELDEWRALADGATDYLDRLEIREREKLGLDTLKVG 468 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N GY+I+V+ + + ++ RQT+ N R+ EL + E+++ + A Sbjct: 469 FNGVHGYYIQVSRGQSHQVPM------HYVRRQTLKNAERYIIPELKEYEDKVLTSKGKA 522 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L +E +E L + ++ E+L ++ +A +D+ LA A NYCRP++ + + Sbjct: 523 LSLEKSLYEALFDQLLPHLEALQLSAAALAELDVLSNLAERAWTLNYCRPVLQDKAGIKI 582 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 GRHP+VE+ LK+ PFIAN L+ ++ ++TGPNMGGKST++RQ ALI Sbjct: 583 SGGRHPVVEQVLKE----PFIANPLSLAPQR-----RMLIITGPNMGGKSTYMRQAALIA 633 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 +MA +GS+VPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V+ Sbjct: 634 LMAWIGSFVPADETLIGPLDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVL 693 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 694 MDEIGRGTSTYDGLSLAWACAENLANRIKAMTLFATHYFELTTLPEKMEGVVNVHLDAVE 753 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 + I F+H V G A SYG+ V LAG+P VI RA + LK E + +H+ Sbjct: 754 HGDTIAFMHSVQEGAASKSYGLAVAALAGVPKEVIKRARNKLKELETVSNHSASS----- 808 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 L + VE ++ L+ D ++P AL +Y +K+ Sbjct: 809 --TVDGSQLPLLVEETSPAVEALEALDPDTLTPRQALDWIYRLKS 851 >gi|86146340|ref|ZP_01064664.1| DNA mismatch repair protein [Vibrio sp. MED222] gi|85835819|gb|EAQ53953.1| DNA mismatch repair protein [Vibrio sp. MED222] Length = 853 Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust. Identities = 304/885 (34%), Positives = 489/885 (55%), Gaps = 48/885 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 + TPMM+QY+++K+ NP+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IP Sbjct: 5 QKHTPMMQQYLKLKAENPEILLFYRMGDFYELFYDDAKKASQLLDISLTKRGSSNGEPIP 64 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H Y+ KL+++G +AICEQI +P +K V R VVR+VTPGT+T++ Sbjct: 65 MAGVPYHAVEGYLAKLVQLGESVAICEQIGNPATSK-----GPVERAVVRIVTPGTVTDE 119 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSE 201 LLS N + ++ ++ A +DI++G F++ + + +++ R PRE++F E Sbjct: 120 ALLSERIDNLIASIYHHNGKFGYATLDITSGRFQLCEPETEEAMAAELQRTSPRELLFPE 179 Query: 202 KELSHAEYKSLFETLGNVAVA-----QPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 FE + +A +P F+ ++ ++ + + FG +++ Sbjct: 180 D----------FEPVNLMASRNGNRRRPVWEFELDTAKQQLNKQFGTRDLVGFGVEGAKL 229 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA I Y+K TQ P I + ++ +D+A R NLEI + L G + +L Sbjct: 230 GLCAAGCLIQYVKDTQRTALPHIRSLTMDKQDHSVILDAATRRNLEITQNLGGGSDNTLA 289 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 + +D++ T G R+ + P+ + + ++ RLD+I +++ L +Q LK D+ Sbjct: 290 EVLDHTATAMGSRMLKRWLHQPMRNISALDQRLDAIGE-MKDLALFTELQPTLKQIGDIE 348 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEK 433 R L+RL + P+D+A +R + + LK+ +L + ++ + LE+ Sbjct: 349 RILARLALRSARPRDMARLRQAMEYLPELAETLTQLKHPYLTQLAQYASPVDEVSELLER 408 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + ++ P RDGG + +G +A LDE R L + + L+ + E I LK+ Sbjct: 409 AIK----ENPPVVIRDGGVIAEGYNAELDEWRDLAAGATEFLDKLEQEERERHGIDTLKV 464 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +NN G+FI+V+ + ++ ++ RQT+ N R+ EL + E+++ ++ + Sbjct: 465 GYNNVHGFFIQVSRGQSHLVPP------HYVRRQTLKNAERYIIPELKEHEDKVLSSKSK 518 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL IE + ++ L + ++ E L N + ++ +D+ LA A +YCRP + S Sbjct: 519 ALAIEKKLWDELFDLLLPYLERLQNIASSVSQLDVLQNLAERADTLDYCRPTMTESAGVQ 578 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 ++ GRHP+VE+ + + PFIAN DL ND+ K+ ++TGPNMGGKST++RQ ALI Sbjct: 579 IQAGRHPVVEQVMDE----PFIANPIDL---NDQR--KMLIITGPNMGGKSTYMRQTALI 629 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +G YVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V Sbjct: 630 ALMAHIGCYVPAESATIGSIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATPNSLV 689 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA+ E+L L ATH+ ELT+L + N L Sbjct: 690 LMDEIGRGTSTYDGLSLAWASAEWLANQINAMTLFATHYFELTELPNQIPTLANVHLDAV 749 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 + + I F+H V G A SYG+ V LAG+P VI A L E L D Sbjct: 750 EHGDSIAFMHAVQEGAASKSYGLAVAGLAGVPKAVIKNARAKLTQLEAL----SIDSPTS 805 Query: 854 YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P ++ +L + + ++ D+++P AL+ LY +K Sbjct: 806 KPSGVDIANQLSLIPEPSEVEQALANVDPDDLTPRQALEELYRLK 850 >gi|91792565|ref|YP_562216.1| DNA mismatch repair protein [Shewanella denitrificans OS217] gi|123166308|sp|Q12PY3|MUTS_SHEDO RecName: Full=DNA mismatch repair protein mutS gi|91714567|gb|ABE54493.1| DNA mismatch repair protein MutS [Shewanella denitrificans OS217] Length = 862 Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust. Identities = 316/884 (35%), Positives = 485/884 (54%), Gaps = 42/884 (4%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 L+ TPMMRQY+ +K+ +P+ L+FYRMGDFYELF++DA LAS LGI+LT RGK G I Sbjct: 9 LEKHTPMMRQYLTMKAAHPEMLLFYRMGDFYELFYEDAKLASELLGISLTARGKSGGDPI 68 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PM G+P H Y+ KL++IG +AICEQ+ P +K V R VVR+VTPGTLT+ Sbjct: 69 PMAGLPYHAVEGYLAKLVQIGQSVAICEQVGDPAT-----SKGPVERKVVRIVTPGTLTD 123 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFS 200 + LL N L A+ + + + A +DIS+G F I+ + L +++ R P E+++S Sbjct: 124 EALLQEHQDNLLAAIYQGKVGFGYATLDISSGRFVIAELDTQEALEAELQRTRPVELLYS 183 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTA 259 E + S+ SL L + +P FD S + + + + FG S +++ A Sbjct: 184 E-DFSNL---SLINHLKGIR-RRPEWEFDFDTSVNLLLQQFGTKDLHGFGISDARLSLQA 238 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A + Y+K TQ P I R + ++ +D+A R NLE+ + LSG RE +L +D Sbjct: 239 AGCLMQYVKDTQKTALPHINAIVRFNQADSIILDAATRRNLELTQNLSGGREHTLAWVLD 298 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G R+ + PL D+ I +R +++ I+ L + + + LKS D+ R ++ Sbjct: 299 NTATPMGSRMLQRWLHQPLRDNNIIASRHNAVAELIEAN-LFDELHQQLKSLGDIERIMA 357 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 RL + P+D A +R + + + + P L + + + P E L + + Sbjct: 358 RLALRSARPRDFARLRQALSLLPELQHTLGQCKTPL-LTKLAQLIGEFPAEHE-LLENAI 415 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 D P RDGG +R G + LDE R+L + + + L+ + + T I LK+ +N Sbjct: 416 VDSPPMLIRDGGVIRSGYHSELDEWRALSEGASDYLTELEAREKQATGISTLKVGYNRVH 475 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IEV+ A + + RQT+ R+ T EL E ++ ++ AL +E Sbjct: 476 GYYIEVSRLQADKVPLS------YQRRQTLKGTERYITPELKVYEEKVLSSQGKALALEK 529 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 + ++ L + I+ + L + + A +D+ A A+ +Y +P + + T + GRH Sbjct: 530 QLWDQLFDLILPKLNELRDFANAAAELDVICCFAERAESLHYTQPQMVSKTGIQINAGRH 589 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE+ SS FIAN +L + ++TGPNMGGKST++RQ ALI +MA + Sbjct: 590 PVVERV----SSTAFIANPVNLDAKR-----HMLIVTGPNMGGKSTYMRQVALISLMAHI 640 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 G +VPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT+QS V++DEIG Sbjct: 641 GCFVPADSAVIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATSQSLVLMDEIG 700 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGT+T DGLS+AW+ EYL + L ATH+ ELT L + +N L + ++ I Sbjct: 701 RGTSTYDGLSLAWSAAEYLALQIKAMTLFATHYFELTQLPDLIPGANNVHLDAIEHDDTI 760 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 F+H V G A SYG+QV LAG+P+ VI A L E NQ P + + Sbjct: 761 AFMHAVQEGAASKSYGLQVAALAGVPSHVIQAAKHKLHQLES--RDNQAS-----PAVAS 813 Query: 860 KESKNNLSKNDKLF-----VEKIKCLNLDEMSPLTALKTLYAVK 898 + +LS + + K+ +N DE+SP AL LY +K Sbjct: 814 APQQQSLSLSPAPMMGEKALNKLTTINPDELSPKQALDLLYELK 857 >gi|50250468|emb|CAH03854.1| DNA mismatch repair protein MutS [Pseudomonas stutzeri] Length = 859 Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust. Identities = 307/883 (34%), Positives = 485/883 (54%), Gaps = 38/883 (4%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L + TPMM+QY +K +PD L+FYRMGDFYELF+DDA A+ L ITLT RG+ G Sbjct: 7 DLSAHTPMMQQYWRLKREHPDQLMFYRMGDFYELFYDDAKKAAALLDITLTARGQSAGTA 66 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM G+P H+A Y+ +L+K+G + ICEQI P +K V R VVR++TPGT++ Sbjct: 67 IPMAGIPFHSAEGYLARLVKLGESVVICEQIGDPA-----ASKGPVERQVVRIITPGTVS 121 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIF 199 ++ LL N L AV + ++ +DI++G F + + L++++ R+ P E++ Sbjct: 122 DEALLDERRDNLLAAVVGDERLFGLSVLDIASGRFSVQELKGWETLLAELERLSPAELLI 181 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + ++ V + + FD + + ++ + FG + Sbjct: 182 PD------DWPQGLPLEKRRGVRRRAPWDFDRDSAFKSLCQQFSTQDLKGFGCENLTLAI 235 Query: 259 AAAAA-ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA ++Y K+TQ P + E + T+ +D A+R NLE+ LSG R+ +L Sbjct: 236 GAAGCLLAYAKETQRTALPHLRSLRHERLADTVILDGASRRNLELDVNLSGGRDNTLQSV 295 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D T G RL + PL + + R DSI +++ +Q LK D+ R Sbjct: 296 MDRCQTAMGSRLLTRWLNRPLRNREILEARQDSITCLLEH-YRFEQLQPQLKDIGDLERI 354 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 L+R+ + P+D+A +RD + + + L +++ + L + P+ L + L+ Sbjct: 355 LARIGLRNARPRDLARLRDAL-AALPQLQAGMQDLVAPHLLELATSISTYPE-LAELLAR 412 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + D+ P RDGG L+ G D LDE +SL + + + + L+ + T + NLK+ +N Sbjct: 413 AIIDNPPAVIRDGGVLKTGYDPELDELQSLSENAGQYLMDLETREKARTGLANLKVGYNR 472 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GYFIE+ S A D +I RQT+ RF T EL + E++ +A + AL Sbjct: 473 VHGYFIELPSKQAESAPAD------YIRRQTLKGAERFITPELKEFEDKALSAKSRALAR 526 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E ++ L +I L ++ +A +D+ LA A + RP ++ G Sbjct: 527 EKLLYDELLEMLIGHLAPLQESAAALAELDMLSNLAERALNLDLNRPRFVEQPCMRIEQG 586 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ L+ PF+AND L ++ ++ ++TGPNMGGKST++RQ ALIV++A Sbjct: 587 RHPVVEQVLE----TPFVANDLGLD-----DATRMLVITGPNMGGKSTYMRQTALIVLLA 637 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ A+++S V++DE Sbjct: 638 QIGSFVPAAACELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNASDRSLVLMDE 697 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 +GRGT+T DGLS+AWA E+L + R L ATH+ ELT L +S N L ++ NE Sbjct: 698 VGRGTSTFDGLSLAWAAAEHLAKL-RAFTLFATHYFELTVLPESEPVVANVHLSATEHNE 756 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--KLYHHNQKDMRLYYP 855 I+FLH V+PG A SYG+ V +LAG+P VI RA D L E L H R+ Sbjct: 757 RIVFLHHVLPGPASQSYGLAVAQLAGVPGEVIQRARDHLSRLETTSLSHEAP---RITPG 813 Query: 856 EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + + +E++ +N D+++P AL+ LY++K Sbjct: 814 QPAPPMQSDMFASLPHPVLEELGRINPDDVTPRQALELLYSLK 856 >gi|88801798|ref|ZP_01117326.1| DNA mismatch repair protein [Polaribacter irgensii 23-P] gi|88782456|gb|EAR13633.1| DNA mismatch repair protein [Polaribacter irgensii 23-P] Length = 870 Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust. Identities = 314/898 (34%), Positives = 506/898 (56%), Gaps = 51/898 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TP+M+QY IK+ PD+++ +R+GDFYE F +DA A+ LGITLTKRG + Sbjct: 7 KKVTPLMKQYNAIKTKYPDAMLLFRVGDFYETFGEDARKAANVLGITLTKRGAGSETETA 66 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 + G P H+ N Y+ KL+K G R+AIC+Q+E P + K++V+R V L+TPG D Sbjct: 67 LAGFPHHSLNTYLPKLVKAGMRVAICDQLEDP-----KMTKNIVKRGVTELITPGVSFND 121 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK 202 ++L +N+L AV + + I+++DISTG + ++ + + + +P E++ ++ Sbjct: 122 EVLQTKTNNFLAAVHFDKNQLGISFLDISTGEYLVAQGTAEYIDKLLQNFNPSEVLVQKQ 181 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK----- 257 + E+ +LFE + VF +E + +++ + T+ FG VE Sbjct: 182 --NKQEFLTLFENRYYTFYLEDWVFQKEYANEI-LQNHFEVNTLKGFG----VEDLKNGI 234 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA A + Y+ +TQ + I R + +++D NLE L + +LL Sbjct: 235 IAAGAVLYYLSETQHNHLKHIQAISRISEDNYVWMDRFTVRNLE-LYNPNSINAITLLDV 293 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 ID +I+ GGRL +A PL + I R + + FFI + + LK D+ R Sbjct: 294 IDKTISPMGGRLLKRWLALPLKNIKDIKKRHELVKFFIDSDEFSKTVTYQLKQISDLERL 353 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN------DLPEELRGAVEKLKKLPQSL 431 +S++ + P++I +++D +++ + I + K+ +L +L A + ++K+ ++L Sbjct: 354 ISKVATAKSSPREIVLLKDSLKAILPIKSAAEKSKNSTVKELGNQLHHATDLIEKITETL 413 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 ++ P G + G LDE R++ K + ++ + E T I +L Sbjct: 414 --------FENAPVNINKGNAIATGVHGELDELRAISTSGKDYLDAMLARETEITGITSL 465 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 KI NN GYFIEV ++ KD + + +I +QT+ N R+ T EL + E +I A Sbjct: 466 KISFNNVFGYFIEVRNAH-----KD-KVPETWIRKQTLVNAERYITEELKEYETKILGAE 519 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + +E E F L II+ + + +Q+IA ID ++ ++LA + NY RP +D ST+ Sbjct: 520 DKIQKLEQEIFSKLLQYIIQFVQIVQENAQIIAKIDCLLSFSVLAIDNNYVRPSMDESTD 579 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 +K+GRHP++EK L + ++AND L ++ ++ ++TGPNM GKS LRQ A Sbjct: 580 LEIKNGRHPVIEKQLPIDQT--YVANDVVL----NRKQQQIIMITGPNMSGKSAILRQTA 633 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LIV++AQMGSYVPA A IGIVDK+F+RVG++DN++ G STFMVEM ETASILN + +S Sbjct: 634 LIVLLAQMGSYVPAQNAKIGIVDKIFTRVGASDNISMGESTFMVEMNETASILNNLSERS 693 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHE-TNRCRGLLATHFHELTDLSKSLKRFHNATL 790 V+LDEIGRGT+T DG+SIAWA E+LHE ++ + L ATH+HEL +++ + +R N + Sbjct: 694 LVLLDEIGRGTSTYDGISIAWAITEFLHEHPSKAKTLFATHYHELNEMTTTFERIKNFNV 753 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM 850 V + + IIFL K++ G ++HS+GI V KLAG+PN VI RA IL EK ++ ++ Sbjct: 754 SVKELKDTIIFLRKLVSGGSNHSFGIHVAKLAGMPNMVIHRANKILMQLEK--NNKNAEV 811 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIK----CLNLDEMSPLTALKTLYAVKAWTLEK 904 + + Q +E + + + D +E I+ N+D ++P+ AL L +K L K Sbjct: 812 KNVLKQKQHEEMQLSFFQMDDPLLENIREEILATNIDTLTPIEALMKLNEIKRMLLNK 869 >gi|293392777|ref|ZP_06637095.1| DNA mismatch repair protein MutS [Serratia odorifera DSM 4582] gi|291424636|gb|EFE97847.1| DNA mismatch repair protein MutS [Serratia odorifera DSM 4582] Length = 850 Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust. Identities = 306/882 (34%), Positives = 481/882 (54%), Gaps = 53/882 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ +K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IPM G Sbjct: 10 TPMMQQYLRLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPMAG 69 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H +Y+ KL+++G +AICEQI P +K V R VVR+VTPGT++++ LL Sbjct: 70 VPHHAVENYLAKLVQLGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTVSDEALL 124 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKEL 204 N L A+ + + A +DIS+G F+++ + + + +++ R +P E+++ E Sbjct: 125 QERQDNLLAAIWQDARGFGYATLDISSGRFRVTEPEDQEAMAAELQRTNPAELLYPES-- 182 Query: 205 SHAEYKSLFETLGNVAVA-----QPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKT 258 FE + +A +P F+ + ++ + + FG SQ Sbjct: 183 --------FEQMSLIAQRHGLRRRPLWEFELETARQQLNLQFGTRDLTGFGVEQSQQALR 234 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA + Y+K TQ + P I E Q + +D+A R NLEI ++LSG + +L + Sbjct: 235 AAGCLLQYVKDTQRTSLPHIRGITMERQQDGIIMDAATRRNLEITQSLSGGSDNTLAAIL 294 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D ++T G R+ + P D +N R +I + + + +Q L+ D+ R L Sbjct: 295 DCTVTPMGSRMLKRWLHMPTRDVNVLNHRQQAIGALQE---IGSDVQPSLRQVGDLERIL 351 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKTLS 436 +RL + P+D+A +R + +I ++ P ++L + + L LE+ + Sbjct: 352 ARLALRTARPRDLARMRHAFQQLPDIRDMLQDIATPHVQKLLAQIGQFDDLQHLLERAVV 411 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + P RDGG + G +A LDE R+L D + + L+++ E+ + LK+ N Sbjct: 412 ----EAPPVLVRDGGVIAPGYNAELDEWRALADGASDYLDRLEIREREKLGLDTLKVGFN 467 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+I+V+ + ++ ++ RQT+ N R+ EL + E+++ + AL Sbjct: 468 GVHGYYIQVSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSKGKALA 521 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 IE ++ L + ++ +L ++ +A +D+ LA A+ NY P + + + Sbjct: 522 IEKALYDELFDLLLPHLPALQQSASALAELDVLTNLAERAETLNYTCPTMSEQPGIRIVE 581 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE+ L S+PFIAN LS ++ ++TGPNMGGKST++RQ ALIV++ Sbjct: 582 GRHPVVEQVL----SEPFIANPLSLSPQR-----RMLIITGPNMGGKSTYMRQTALIVLL 632 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A +GSYVPA+ A IG VD++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V++D Sbjct: 633 AHIGSYVPATKATIGPVDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVLMD 692 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + N L + Sbjct: 693 EIGRGTSTYDGLSLAWACAENLANRIKAMTLFATHYFELTTLPEKMAGVVNVHLDALEHG 752 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 + I F+H V G A SYG+ V LAG+P VI RA L+ E L +H+ Sbjct: 753 DTIAFMHSVQEGAASKSYGLAVAALAGVPRDVIKRARQKLRELEALSNHSAAG------- 805 Query: 857 IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 L++ VE ++ L+ D ++P AL +Y +K Sbjct: 806 TVDATQMTLLTEEPSPAVEALEGLDPDALTPREALDWIYRLK 847 >gi|313637912|gb|EFS03230.1| DNA mismatch repair protein MutS [Listeria seeligeri FSL S4-171] Length = 860 Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust. Identities = 313/895 (34%), Positives = 500/895 (55%), Gaps = 59/895 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+EIK D+ +F+R+GDFYE+FF+DAL AS+ L ITLT R + IPMCG Sbjct: 5 TPMIKQYLEIKDKYXDAFLFFRLGDFYEMFFEDALNASQILEITLTGREGGTKEKIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A+ YI LI+ G+++AICEQ+E P + K +V+R VV+L++PGT+ +++ L Sbjct: 65 VPYHSASGYIDTLIEKGYKVAICEQVEDP-----KTTKGMVKREVVQLISPGTVMDERGL 119 Query: 146 SPTDSNYLMAVARIR-TEWAIAWIDISTGIFK--ISTSNHDRLISDIMRIDPREIIFSEK 202 ++NY+ A+ E+ A+ D+STG K + ++ DRLI+++ + +E+I SE Sbjct: 120 KAKENNYIAALYCYEGKEYGFAYSDLSTGELKSTVIEASEDRLINELTTLSTKELIVSES 179 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 E E L NV Q + F S+ E N V S S EK A Sbjct: 180 EK---------EVLSNVMKEQLGLTF--SVHEEDAIPAENEKLVTRHMSLS--EKRAIGK 226 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDYS 321 + Y+K+TQ + + + + + +D ++ NLE+ ++ G R+ +LL +D + Sbjct: 227 LLHYLKETQKRDLGHLQQAVHYETSNYMKMDYYSKRNLELAASIRGKGRQGTLLWLLDNT 286 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSI-----NFFIQNPILINPIQKILKSSPDVPR 376 T GGR+ + I PL D KI R + + +FF + ++ N LK+ D+ R Sbjct: 287 QTAMGGRMLKQWIDRPLIDRNKIIERQNDVSELMAHFFERLELVEN-----LKNVYDLER 341 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEKLKKLPQSLEKT 434 R+ G +D+ +R+ + I L + P L ++ ++L LE+ Sbjct: 342 LAGRVAYGNVNARDLIQLRNSLYQIPRIRETLLSMNTPSLTTLANQLDPCEELTGKLEEA 401 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + D P R+GG ++DG ++ LD R K IA L+ K E T IK +K+ Sbjct: 402 IM----DSAPISIREGGIIKDGYNSQLDTYRDASRNGKTWIAELERKERELTGIKTMKVG 457 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N GY+IEVT ++ +L + R+ +QT++N R+ T EL + E I +A + Sbjct: 458 FNRVFGYYIEVTRANTHLL-----PEGRYERKQTLTNAERYITPELKEKEKLILDAEEKS 512 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E + F + + + E L ++ ++ ID + A ++++ ++ RP + + V Sbjct: 513 MELEYQLFTEVRETVKDYIERLQKLAKSVSEIDCLQSFADISEKNHFIRPTLSEDGSLHV 572 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 K GRHP+VEK + QS ++ANDC+L D N ++ L+TGPNM GKST++RQ AL Sbjct: 573 KQGRHPVVEKVMGAQS---YVANDCNL----DANR-EILLITGPNMSGKSTYMRQVALTA 624 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 I AQ+G +VPA A + I D++F+R+G+AD+L +G+STFMVEM+E + + AT S ++ Sbjct: 625 ICAQVGCFVPAEEAILPIFDQIFTRIGAADDLIAGQSTFMVEMLEARNAIVHATKDSLIL 684 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 DEIGRGTAT DG+++A A IEY+HE + L +TH+HELTDL K L+ N + + Sbjct: 685 FDEIGRGTATYDGMALAQAIIEYIHENVHAKTLFSTHYHELTDLEKELRGLQNIHVSAVE 744 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE----KLYHHNQKDM 850 N ++FLHK+ G AD SYGI V +LA LP ++I RA IL+ E K+ N+K Sbjct: 745 ENGKVVFLHKIKEGPADKSYGIHVAELAELPTSLIERARRILEQLENDEKKIIISNEKQP 804 Query: 851 RLYYPEIQTK----ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWT 901 + E+Q E + L + +++I LN+ +M+P+ A+ LY +++ T Sbjct: 805 EEIHEEVQLSMFPVEPEQKLPSKEAKLIKEIATLNIMQMTPMDAMNKLYELQSKT 859 >gi|258511466|ref|YP_003184900.1| DNA mismatch repair protein MutS [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478192|gb|ACV58511.1| DNA mismatch repair protein MutS [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 867 Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust. Identities = 313/885 (35%), Positives = 475/885 (53%), Gaps = 48/885 (5%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S TPMMRQY EIKS D+L+ +R+GDFYELFF+DA++AS+ L ITLT R +PM Sbjct: 2 SLTPMMRQYREIKSKLDDTLLMFRLGDFYELFFEDAVIASQALDITLTGRDAGEAGRVPM 61 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVP H + Y+++LI+ G R+AIC+Q+E P + K LVRR +VR+VTPGT ++ Sbjct: 62 CGVPHHALDGYLERLIEQGFRVAICDQVEDP-----KAAKGLVRREIVRIVTPGTAVTEE 116 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 +D+ YL A+A E +A +D+ G + + + + R PREI+ + Sbjct: 117 ----SDARYLAALAFQGDEVGLALVDVGAGDVWFGAGSAEDMRDHVARFRPREILLEGAQ 172 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAA 262 + + G + P D + +Y ++ + G +A Sbjct: 173 AFPGWLEEILNRHGAIVTRVPAPSGDAFLM------HYGASSPEALGLRPGSAALSACNM 226 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDYS 321 Y++ TQM + P +++ +LE++ SG R SL I + Sbjct: 227 GFQYLRDTQMAALRHLAPPRPLLEPGRMWLSERTVEHLELVPMGSGRERRTSLYDVIRET 286 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +T AG RL + PL D I RLD++ + +L I++ LK D+ R L++ Sbjct: 287 VTAAGSRLLRTWMLRPLVDRGAIEERLDAVTALADDLLLRAEIRESLKGMHDLSRLLAKC 346 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKL-KKLP--QSLEKTLSSM 438 IGR P+D+ + I G + L LP + +L + LP + L + ++ Sbjct: 347 SIGRATPRDLLALAHAIEKGEAAIAL-----LPADGPALFSRLTRDLPDFRPLAEHIARE 401 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 L DD P +GG RDG DA +D RSL+ + + + + + E T IK+LKI +N Sbjct: 402 LVDDPPASAAEGGIFRDGVDAEIDRLRSLQSEGRSWLREFEARERERTGIKSLKIGYNKV 461 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IEV+ ++ S++ D E K QT++ RFT EL E + A + +E Sbjct: 462 FGYYIEVSKANLSLVPADYERK------QTLAAGERFTHPELKAREADMLTAAERVVELE 515 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 FE + + EQ+ L ++V++ ID+ LA LA ++ Y RP + + +++GR Sbjct: 516 RARFESWIHRVREQASELQRFAEVVSTIDVLAGLAELAVKRGYVRPEVTDDVGIEIREGR 575 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE +L + F+ ND L+ P+ + LLTGPNMGGKST++RQ ALI I+AQ Sbjct: 576 HPVVEASLGSE----FVPNDLVLT-PD----APIILLTGPNMGGKSTYMRQAALIAILAQ 626 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 MGSYVPA A IG+VD++F+R+G++D+L+ G+STFMVEM E A IL +A+ +S V+LDEI Sbjct: 627 MGSYVPARSARIGLVDRVFTRIGASDDLSRGQSTFMVEMTELAEILREASGRSLVLLDEI 686 Query: 739 GRGTATLDGLSIAWATIEYLHE-TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 GRGT+T DGLSIA A +E L E +R L ATH+HEL S+ N ++ V +++ Sbjct: 687 GRGTSTYDGLSIAEAVLEDLAERRDRPLTLFATHYHELISFSERFSCVRNQSMAVEETDT 746 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 GI FLH V+ +D SYGIQV +LAGLP+ VI RA + L+ E Sbjct: 747 GIRFLHTVVMRPSDRSYGIQVARLAGLPDRVIRRAMEFLEAREAKPEVAAARDDRRERRR 806 Query: 858 QTKESKNNLSKNDKLF-------VEKIKCLNLDEMSPLTALKTLY 895 Q +++ LF V+ + ++ M+PL A++ L+ Sbjct: 807 QEGQAREGGPVALDLFAAPYRDLVDWLAAQDVMRMTPLEAMQVLH 851 >gi|51595128|ref|YP_069319.1| DNA mismatch repair protein MutS [Yersinia pseudotuberculosis IP 32953] gi|153948692|ref|YP_001402249.1| DNA mismatch repair protein MutS [Yersinia pseudotuberculosis IP 31758] gi|186894140|ref|YP_001871252.1| DNA mismatch repair protein MutS [Yersinia pseudotuberculosis PB1/+] gi|81691882|sp|Q66EB5|MUTS_YERPS RecName: Full=DNA mismatch repair protein mutS gi|167012385|sp|A7FLX1|MUTS_YERP3 RecName: Full=DNA mismatch repair protein mutS gi|238691399|sp|B2K584|MUTS_YERPB RecName: Full=DNA mismatch repair protein mutS gi|51588410|emb|CAH20018.1| methyl-directed mismatch repair, recognize exocyclic adducts of guanosine [Yersinia pseudotuberculosis IP 32953] gi|152960187|gb|ABS47648.1| DNA mismatch repair protein MutS [Yersinia pseudotuberculosis IP 31758] gi|186697166|gb|ACC87795.1| DNA mismatch repair protein MutS [Yersinia pseudotuberculosis PB1/+] Length = 851 Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust. Identities = 314/889 (35%), Positives = 488/889 (54%), Gaps = 55/889 (6%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 + L S TPMM+QY+ +K+ +P+ L+FYRMGDFYELF+ DA AS+ L I+LTKRG G+ Sbjct: 5 DKLDSHTPMMQQYLRLKAQHPEILLFYRMGDFYELFYSDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H+ +Y+ KL+++G AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGVPYHSIENYLAKLVQLGESAAICEQIGDPATSK-----GPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F+++ ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDAKGFGYATLDISSGRFRVAEPADLETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 + E + E SL E + +P F+ ++ ++ + + FG + + Sbjct: 180 YPE----NFEPMSLIEHRHGLR-RRPLWEFELDTAKQQLNLQFGTRDLIGFGVEQAHLAL 234 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA + Y+K TQ + P I E Q + +D+A R NLE+ + LSG E +L Sbjct: 235 RAAGCLLQYVKDTQRTSLPHIRGLTMERQQDGIIMDAATRRNLELTQNLSGGSENTLAAI 294 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D S+T G R+ + P+ D + R +I +Q+ + +Q L+ D+ R Sbjct: 295 LDCSVTPMGSRMLKRWLHMPIRDIRVLTDRQQAIGG-LQD--IAAELQTPLRQVGDLERI 351 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKTL 435 L+RL + P+D+A +R + I L D+P + L V + +L LE+ + Sbjct: 352 LARLALRTARPRDLARMRHAFQQLPEIHRLLQPIDVPHVQNLLSQVGQFDELQDLLERAI 411 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + P RDGG + G +A LDE R+L D + + L+++ E+ + LK+ Sbjct: 412 V----ETPPVLVRDGGVIASGYNAELDEWRALADGATDYLDRLEIREREKLGLDTLKVGF 467 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+I+V+ + ++ ++ RQT+ N R+ EL + E+++ + AL Sbjct: 468 NGVHGYYIQVSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSKGKAL 521 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 IE +E + + ++ L ++ +A +D+ LA A+ NY P + + + Sbjct: 522 AIEKGLYEEIFDLLLPHLPELQLSANALAELDVLANLAERAETLNYSCPTLSDKPGIKIM 581 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ LK+ PFI+N LS ++ ++TGPNMGGKST++RQ ALIV+ Sbjct: 582 GGRHPVVEQVLKE----PFISNPLTLSPQR-----RMLIITGPNMGGKSTYMRQTALIVL 632 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +A +GSYVPA A IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT QS V++ Sbjct: 633 LAHLGSYVPADQATIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEQSLVLM 692 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 693 DEIGRGTSTYDGLSLAWACAENLASRIKAMTLFATHYFELTTLPEKMEGVANVHLDALEH 752 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH------NQKD 849 E I F+H V G A SYG+ V LAG+P VI RA LK E L ++ + Sbjct: 753 GETIAFMHSVQEGAASKSYGLAVAALAGVPRDVIKRARQKLKELESLSNNAAASTIDGSQ 812 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 M L EI VE ++ L+ D +SP AL+ +Y +K Sbjct: 813 MTLLNEEIPPA-------------VEALEALDPDSLSPRQALEWIYRLK 848 >gi|218710549|ref|YP_002418170.1| DNA mismatch repair protein MutS [Vibrio splendidus LGP32] gi|254766647|sp|B7VK59|MUTS_VIBSL RecName: Full=DNA mismatch repair protein mutS gi|218323568|emb|CAV19791.1| DNA mismatch repair protein mutS [Vibrio splendidus LGP32] Length = 853 Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust. Identities = 304/885 (34%), Positives = 489/885 (55%), Gaps = 48/885 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 + TPMM+QY+++K+ NP+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IP Sbjct: 5 QKHTPMMQQYLKLKAENPEILLFYRMGDFYELFYDDAKKASQLLDISLTKRGSSNGEPIP 64 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H Y+ KL+++G +AICEQI +P +K V R VVR+VTPGT+T++ Sbjct: 65 MAGVPYHAVEGYLAKLVQLGESVAICEQIGNPATSK-----GPVERAVVRIVTPGTVTDE 119 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSE 201 LLS N + ++ ++ A +DI++G F++ + + +++ R PRE++F E Sbjct: 120 ALLSERIDNLIASIYHHNGKFGYATLDITSGRFQLCEPETEEAMAAELQRTSPRELLFPE 179 Query: 202 KELSHAEYKSLFETLGNVAVA-----QPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 FE + +A +P F+ ++ ++ + + FG +++ Sbjct: 180 D----------FEPVNLMASRNGNRRRPVWEFELDTAKQQLNKQFGTRDLVGFGVEGAKL 229 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA I Y+K TQ P I + ++ +D+A R NLEI + L G + +L Sbjct: 230 GLCAAGCLIQYVKDTQRTALPHIRSLTMDKQDHSVILDAATRRNLEITQNLGGGTDNTLA 289 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 + +D++ T G R+ + P+ + + ++ RLD+I +++ L +Q LK D+ Sbjct: 290 EVLDHTATAMGSRMLKRWLHQPMRNISALDQRLDAIGE-MKDLALFTELQPTLKQIGDIE 348 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEK 433 R L+RL + P+D+A +R + + LK+ +L + ++ + LE+ Sbjct: 349 RILARLALRSARPRDMARLRQAMEYLPELAETLTQLKHPYLTQLAQYASPVDEVSELLER 408 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + ++ P RDGG + +G +A LDE R L + + L+ + E I LK+ Sbjct: 409 AIK----ENPPVVIRDGGVIAEGYNAELDEWRDLAAGATEFLDKLEQEERERHGIDTLKV 464 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +NN G+FI+V+ + ++ ++ RQT+ N R+ EL + E+++ ++ + Sbjct: 465 GYNNVHGFFIQVSRGQSHLVPP------HYVRRQTLKNAERYIIPELKEHEDKVLSSKSK 518 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL IE + ++ L + ++ E L N + ++ +D+ LA A +YCRP + S Sbjct: 519 ALAIEKKLWDELFDLLLPYLERLQNIASSVSQLDVLQNLAERADTLDYCRPTMTESAGVQ 578 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 ++ GRHP+VE+ + + PFIAN DL ND+ K+ ++TGPNMGGKST++RQ ALI Sbjct: 579 IQAGRHPVVEQVMDE----PFIANPIDL---NDQR--KMLIITGPNMGGKSTYMRQTALI 629 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +G YVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V Sbjct: 630 ALMAHIGCYVPAESATIGSIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATPNSLV 689 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA+ E+L L ATH+ ELT+L + N L Sbjct: 690 LMDEIGRGTSTYDGLSLAWASAEWLANQINAMTLFATHYFELTELPNQIPTLANVHLDAV 749 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 + + I F+H V G A SYG+ V LAG+P VI A L E L D Sbjct: 750 EHGDSIAFMHAVQEGAASKSYGLAVAGLAGVPKAVIKNARAKLTQLEAL----SIDSPTS 805 Query: 854 YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P ++ +L + + ++ D+++P AL+ LY +K Sbjct: 806 KPSGVDIANQLSLIPEPSEVEQALANVDPDDLTPRQALEELYRLK 850 >gi|332886247|gb|EGK06491.1| DNA mismatch repair protein mutS [Dysgonomonas mossii DSM 22836] Length = 870 Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust. Identities = 301/888 (33%), Positives = 492/888 (55%), Gaps = 42/888 (4%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 + TP+M+QY EIKS +PD+++ +R+GDFYE F DDA+ A+ LGITLT+RG + + + Sbjct: 6 AETPLMKQYFEIKSKHPDAILLFRVGDFYETFSDDAIDAAEILGITLTRRGNGTAQFVEL 65 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G P H + Y+ KL++ G R+AIC+Q+E P + K+LV+R + LVTPG D Sbjct: 66 AGFPHHALDTYLPKLVRAGRRVAICDQLEDP-----KQTKNLVKRGITELVTPGVSINDN 120 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF--SE 201 +L+ ++N+L A+ + ++++DISTG F ++ + + + P+E++ S+ Sbjct: 121 ILNHKENNFLCAIHFAKNTCGVSFLDISTGEFLVAEGTKEYIDKLLTNFSPKEVLLERSK 180 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 K++ + S F + F ++ R+ ++ + FG AA Sbjct: 181 KKMFEESFGSRF-----FIFQLDDWVFTEDTAKGRLLKHFETRNLKGFGVEHLTNGVIAA 235 Query: 262 AAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 I Y+ TQ + I R + + +D +LEI+ T++ +SLL +D Sbjct: 236 GTILHYLDVTQHTHIGHITSLSRIEEDKYVRLDKFTVRSLEIISTMNEGG-KSLLDILDK 294 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 +++ G R+ + PL D IN+RL + +F ++ L +++ L D+ R +S+ Sbjct: 295 TVSPMGARMLRRWLVFPLKDVKPINSRLSVVEYFFKDIELKTLLEEQLALIGDLERIISK 354 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + + R P++I ++ +++ I N FL +D P LR E+L P + + + Sbjct: 355 VAVNRVSPREIVQLKVALKAIEPIRNAFLASDEPS-LREIGERLNPCP-VIHDRIEKEVQ 412 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D P+ G +R G + LDE R + K + +Q + E T I +LKI NN G Sbjct: 413 PDPPSLINKGNIIRKGVNPELDELRDIAYSGKDYLLKIQQRETEATGISSLKISFNNVFG 472 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IEV ++ KD + + +I +QT+ N R+ T EL + E +I A +E Sbjct: 473 YYIEVRNTH-----KD-KVPEGWIRKQTLVNAERYITQELKEYEEKILGAEEKIQALESN 526 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F L +I+E ++ + +IA D ++ + +AKE Y RP I+++ +K+GRHP Sbjct: 527 LFNELVLSIVEYIPAIQANASLIAQTDCLLSFSKVAKENKYIRPEINDTDVLKIKNGRHP 586 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 ++EK L S +IAND L D N ++ ++TGPNM GKS LRQ ALI +MAQ G Sbjct: 587 VIEKQLPLGES--YIANDVSL----DSNKQQIIIITGPNMAGKSALLRQTALITLMAQAG 640 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA A IG+VDK+F+RVG++DN++ G STFMVEM E + ILN + +S V+ DE+GR Sbjct: 641 SFVPAESAQIGLVDKIFTRVGASDNISVGESTFMVEMNEASDILNNLSPKSLVLFDELGR 700 Query: 741 GTATLDGLSIAWATIEYLHETNRCRG--LLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GT+T DG+SIAWA +EY+HE + R L ATH+HEL ++ KS KR N + V + + Sbjct: 701 GTSTYDGISIAWAIVEYIHEHPKARAKTLFATHYHELNEMEKSFKRIKNFNVSVKEIDNK 760 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 +IFL K++PG ++HS+GI V K+AG+P +++ RA ILK E + + + P Sbjct: 761 VIFLRKLVPGGSEHSFGIHVAKMAGMPQSIVKRANSILKQLES----DNRKQGISKPIKD 816 Query: 859 TKESKNN-----LSKNDKLFVE---KIKCLNLDEMSPLTALKTLYAVK 898 KE++ +D + + +IK L+++ ++P+ AL L +K Sbjct: 817 IKENREGYQLSFFQLDDPVLSQVRDEIKSLDVNNLTPMEALNKLNEIK 864 >gi|90109855|sp|Q473E4|MUTS_RALEJ RecName: Full=DNA mismatch repair protein mutS Length = 894 Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust. Identities = 325/915 (35%), Positives = 487/915 (53%), Gaps = 63/915 (6%) Query: 14 EQIDLEENL-----KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGI 68 E+I+L + + + TPMM+QY+ IK+ +PD+L+FYRMGDFYELF DDA A+R L I Sbjct: 3 EKIELNQEVAKPLAEKHTPMMQQYLRIKADHPDTLLFYRMGDFYELFHDDAEKAARLLDI 62 Query: 69 TLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRR 128 TLT RG G I M G+P H+A+ Y+ KL+K+G +AICEQI P +K V R Sbjct: 63 TLTARGSSNGVPIRMAGIPFHSADQYLAKLVKLGESVAICEQIGDPA-----ASKGPVER 117 Query: 129 NVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAI-----AWIDISTGIFKISTSNHD 183 VVR+VTPGTLT+ LL +LMAV + T + AW+++++G ++ Sbjct: 118 KVVRIVTPGTLTDASLLPDKSDTFLMAVHQQTTRRGVSKTGLAWLNLASGELRLMECEAA 177 Query: 184 RLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQ---PNVFFDHSISESRIADY 240 +L + RI P E+++++ L VA A+ P FD R+ + Sbjct: 178 QLAREFERIRPAELLYADGI-----------DLPAVACARTRLPEWHFDQDAGTRRLLEQ 226 Query: 241 YNITTVDTFGSFSQVEKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSN 299 + +++ FG AA A+ +Y TQ + + + E + +DSA R N Sbjct: 227 LGVASLEPFGCAGLGAAIGAAGALLNYAATTQGQSLRHVRDIKVERESEFVGLDSATRRN 286 Query: 300 LEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPI 359 LE+ TL G +L +D T G R + PL D R +I I + I Sbjct: 287 LELTETLRGGESPTLFSLLDTCATAMGSRALRHWLHHPLRDPALPRARQQAIGVLIDHGI 346 Query: 360 LINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRG 419 + ++ L+ DV R SRL + P+D++ +RD +R+ ++ L Sbjct: 347 --DDLRSALRKLADVERITSRLALLSARPRDLSSLRDTLRALPHVRACLQAEPDSSLLSL 404 Query: 420 AVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQ 479 V +L +PQ+ L S ++++ T RDGG + G DA LDE R + + + + L+ Sbjct: 405 TVAELA-VPQACLDLLISAVAEEPATVVRDGGVIARGYDAELDELRDISENCGQFLVDLE 463 Query: 480 LKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLE 539 + T I NL++++N G++IEVT+ A + D + RQT+ N R+ T E Sbjct: 464 SRERTRTGIANLRVEYNRVHGFYIEVTNGQADKVPDD------YRRRQTLKNAERYITPE 517 Query: 540 LIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQ 599 L E++ +A + AL E + +++L A++ L + +A +D+ +LA A+ Sbjct: 518 LKAFEDKALSAQDRALAREKQLYDVLLQALLPHIGELQRVAGALARLDVLASLAERAQTL 577 Query: 600 NYCRP--IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTG 657 ++ P + DN + + GRHP+VE L +S PFIANDC L+ + KL L+TG Sbjct: 578 DWSCPERVGDNVIDIV--QGRHPVVEGQLAAESV-PFIANDCQLN-----EARKLLLITG 629 Query: 658 PNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEM 717 PNMGGKSTF+RQ ALIV++A +G+YVPA A IG VD++F+R+G+AD+LA GRSTFMVEM Sbjct: 630 PNMGGKSTFMRQTALIVLLACVGAYVPARRAVIGPVDRIFTRIGAADDLAGGRSTFMVEM 689 Query: 718 IETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTD 777 E A+IL+ AT S V++DEIGRGT+T DGL++AWA +L NR L ATH+ ELT Sbjct: 690 TEAAAILHHATPASLVLMDEIGRGTSTFDGLALAWAIARHLLSHNRSHTLFATHYFELTQ 749 Query: 778 LSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILK 837 L + + N L + +GI+FLH V G A SYG+QV +LAG+P VI A L Sbjct: 750 LPQEFPQAANVHLSAVEHGDGIVFLHAVQDGPASQSYGLQVAQLAGVPQPVIRAARKHLA 809 Query: 838 TFEKLYHHN----QKDMRLYYPEIQTKESKNNLSKNDKLFV----------EKIKCLNLD 883 E+ Q D+ P T + +S + V + + L+ D Sbjct: 810 WLEQQSADATPTPQLDLFAPPPHPDTSDDDEPVSIGKPVQVALLPEQAAVLDALSDLDPD 869 Query: 884 EMSPLTALKTLYAVK 898 ++P AL LY +K Sbjct: 870 SLTPRAALDALYRLK 884 >gi|289434685|ref|YP_003464557.1| DNA mismatch repair protein MutS [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170929|emb|CBH27471.1| DNA mismatch repair protein MutS [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 860 Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust. Identities = 313/895 (34%), Positives = 499/895 (55%), Gaps = 59/895 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+EIK D+ +F+R+GDFYE+FF+DAL AS+ L ITLT R + IPMCG Sbjct: 5 TPMIKQYLEIKDKYQDAFLFFRLGDFYEMFFEDALNASQILEITLTGREGGTKEKIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A+ YI LI+ G+++AICEQ+E P + K +V+R VV+L++PGT+ +++ L Sbjct: 65 VPYHSASGYIDTLIEKGYKVAICEQVEDP-----KTTKGMVKREVVQLISPGTVMDERGL 119 Query: 146 SPTDSNYLMAVARIR-TEWAIAWIDISTGIFK--ISTSNHDRLISDIMRIDPREIIFSEK 202 ++NY+ A+ E+ A+ D+STG K + ++ DRLI+++ + +E+I S Sbjct: 120 KAKENNYIAALYCYEGKEYGFAYSDLSTGELKSTVIEASEDRLINELTTLSTKELIVSAT 179 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 E E L NV Q + F S+ E N V S S EK A Sbjct: 180 EK---------EVLSNVMKEQLGLTF--SVHEEDTIPTENEKLVTRHMSLS--EKRAIGK 226 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDYS 321 + Y+K+TQ + + + + + +D ++ NLE+ ++ G R+ +LL +D + Sbjct: 227 LLHYLKETQKRDLGHLQQAVHYETSNYMKMDYYSKRNLELAASIRGKGRQGTLLWLLDNT 286 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSI-----NFFIQNPILINPIQKILKSSPDVPR 376 T GGR+ + I PL D KI R + + +FF + ++ N LK+ D+ R Sbjct: 287 QTAMGGRMLKQWIDRPLIDRNKIIERQNDVSELMAHFFERLELVEN-----LKNVYDLER 341 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEKLKKLPQSLEKT 434 R+ G +D+ +R+ + I L + P L ++ ++L + LE+ Sbjct: 342 LAGRVAYGNVNARDLIQLRNSLYQIPRIRATLLSMNTPSLTTLANQLDPCEELTEKLEEA 401 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + D P R+GG ++DG ++ LD R K IA L+ K E T IK +K+ Sbjct: 402 IM----DSAPISIREGGIIKDGYNSQLDTYRDASRNGKTWIAELERKERELTGIKTMKVG 457 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N GY+IEVT ++ +L + R+ +QT++N R+ T EL + E I +A + Sbjct: 458 FNRVFGYYIEVTRANTHLL-----PEGRYERKQTLTNAERYITPELKEKEKLILDAEEKS 512 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E + F + + + E L ++ ++ ID + A ++++ ++ RP + + V Sbjct: 513 MELEYQLFTEVRETVKDYIERLQKLAKSVSEIDCLQSFADISEKNHFIRPTLSEDGSLHV 572 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 K GRHP+VEK + QS ++ANDCDL D N ++ L+TGPNM GKST++RQ AL Sbjct: 573 KQGRHPVVEKVMGAQS---YVANDCDL----DANR-EILLITGPNMSGKSTYMRQVALTA 624 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 I AQ+G +VPA A + I D++F+R+G+AD+L +G+STFMVEM+E + + AT S ++ Sbjct: 625 ICAQVGCFVPAEEAVLPIFDQIFTRIGAADDLIAGQSTFMVEMLEARNAIVHATKDSLIL 684 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 DEIGRGTAT DG+++A A IEY+HE + L +TH+HELTDL K L N + + Sbjct: 685 FDEIGRGTATYDGMALAQAIIEYIHENVHAKTLFSTHYHELTDLEKELHGLQNIHVSAVE 744 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE----KLYHHNQKDM 850 N ++FLHK+ G AD SYGI V +LA LP ++I RA IL+ E K+ N+K Sbjct: 745 ENGKVVFLHKIKEGPADKSYGIHVAELAELPTSLIERARRILEQLENDEKKIIISNEKQP 804 Query: 851 RLYYPEIQTK----ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWT 901 + E+Q E + L + +++I LN+ +M+P+ A+ LY +++ T Sbjct: 805 EEIHEEVQLSMFPVEPEQKLPSKEAKLIKEIATLNIMQMTPMDAMNKLYELQSKT 859 >gi|154483535|ref|ZP_02025983.1| hypothetical protein EUBVEN_01239 [Eubacterium ventriosum ATCC 27560] gi|149735445|gb|EDM51331.1| hypothetical protein EUBVEN_01239 [Eubacterium ventriosum ATCC 27560] Length = 897 Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust. Identities = 312/907 (34%), Positives = 507/907 (55%), Gaps = 56/907 (6%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 + +L S TPMM+ Y+E K + D ++FYR+GDFYE+FFDDA AS+ + ITLT + L Sbjct: 12 DNHLDSLTPMMKMYLETKKQHDDCIIFYRLGDFYEMFFDDATTASKEMEITLTGKSCGLE 71 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + PMCGVP H + YI +L+ G+++ I EQ E P +AK LV+R VVR+VTPGT Sbjct: 72 ERAPMCGVPYHAVDSYINRLVTKGYKVCIVEQTEDPAQAK-----GLVKREVVRIVTPGT 126 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREI 197 + +NY+M++A I ++ I+ D++TG + ++ +R ++ +I + P EI Sbjct: 127 NLNTAAMDEGRNNYIMSIAYIGGKFGISIADVTTGDYYVTEVTTERNVVDEINKFMPSEI 186 Query: 198 IFSEKEL-SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 I + L S + L + L +FD I + +++ + + G S + Sbjct: 187 ICNHSFLMSGMDIDDLKDRLSISVFELEEWYFDEEICSDVLKEHFGMVDLAGLGISNMSL 246 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTLSGSREQ 312 A+ + + Y+ +TQ K ++ + + ST + +D++ R NLE+ TL +++ Sbjct: 247 GIIASGSLLKYLYETQ---KNSLSHMTKLIPYSTSTFMILDTSTRRNLELCETLREKQKK 303 Query: 313 -SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 SLL +D + T G R I PL +I R I ++ I + +++ L Sbjct: 304 GSLLWVLDKTKTAMGARTLRNYIEQPLISKEEIINRQKVIEELNKSMITRDELREYLAPI 363 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSL 431 D+ R LS++ P+D+ + + +I N+ + D L + + + + Sbjct: 364 YDLERLLSKISYRSANPRDLIAFKTSLSMLPHIKNIIM--DFKSPLFKDIYNRLDVLEDI 421 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 +S + DD P ++GG +R G + +D R+ + + K +A ++ E T IKNL Sbjct: 422 TTLISESIMDDPPINIKEGGIIRTGYNEEIDRLRNAKTEGKTWLAEMEASEKESTGIKNL 481 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 KIK+N GY+IEV++S KD + D ++ +QT++N R+TT +L +LE+ I A Sbjct: 482 KIKYNKVFGYYIEVSNSF-----KD-QVPDYYVRKQTLTNAERYTTDKLKELEDVIMGAE 535 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + +E F + + I Q + ++ +A ID+ +LA +A +Y +P I+ Sbjct: 536 DKLFSLEYNIFTAIRDEIFNQINRIQQTAKAVAQIDVFASLAFVADRNHYVKPKINEKGV 595 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 +KDGRHP+VEK + + FIAN+ L D N+ +L ++TGPNM GKST++RQ A Sbjct: 596 IDIKDGRHPVVEKMMPDNT---FIANNTFL----DMNNNRLAIITGPNMAGKSTYMRQTA 648 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LIV+MAQ+GS+VPA YA+I I DK+F+RVG++D+LASG+STFMVEM E A+IL AT S Sbjct: 649 LIVLMAQIGSFVPAKYANISICDKIFTRVGASDDLASGQSTFMVEMTEVANILRNATANS 708 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNAT 789 +ILDEIGRGT+T DGLSIAWA +E++ + + L ATH+HELT+L +L +N Sbjct: 709 LLILDEIGRGTSTFDGLSIAWAVVEHICDKKLLGAKTLFATHYHELTELEGTLPGVNNYC 768 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 + V + + I+FL K++ G AD SYGIQV KLAG+P +V++RA +++ + D Sbjct: 769 ISVKEQGDDIVFLRKIVAGGADKSYGIQVAKLAGVPESVLNRAKELVNEL------SNAD 822 Query: 850 MRLYYPEIQTK-ESKNNL--SKNDKL---------------FVEKIKCLNLDEMSPLTAL 891 + + EI + NN+ + ND L +++++ ++L M+P+ L Sbjct: 823 ITVKAKEIAANLQPGNNVLPTMNDDLEAHQMTLFDTVREDDIIKELQEIDLGTMTPIEGL 882 Query: 892 KTLYAVK 898 LY ++ Sbjct: 883 NYLYKLQ 889 >gi|290476556|ref|YP_003469461.1| methyl-directed mismatch repair, recognizes exocyclic adducts of guanosine [Xenorhabdus bovienii SS-2004] gi|289175894|emb|CBJ82697.1| methyl-directed mismatch repair, recognizes exocyclic adducts of guanosine [Xenorhabdus bovienii SS-2004] Length = 858 Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust. Identities = 313/887 (35%), Positives = 486/887 (54%), Gaps = 51/887 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 ++L S TPMM+QY+ +K+ +PD L+ YRMGDFYELFFDDA A++ L I+LTKRG+ G+ Sbjct: 12 KDLDSHTPMMQQYLRLKAQHPDILLLYRMGDFYELFFDDAKKAAKLLDISLTKRGQSAGQ 71 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H +Y+ KL+++G A+CEQI P +K V R VVR+VTPGT+ Sbjct: 72 PIPMAGVPYHAIENYLAKLVQLGESAALCEQIGDPATSK-----GPVERKVVRIVTPGTV 126 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 T++ LL N L A+ + A +DI++G F++S ++ D + +++ R P E++ Sbjct: 127 TDEALLHERQDNLLAAIWHDSQGFGYATLDITSGRFRVSEMADEDTIAAELQRTRPAELL 186 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + E S A L E + +P F+ + ++ + + FG VEK+ Sbjct: 187 YPESFGSMA----LIERCSGLR-RRPMWEFELDTARQQLNLQFGTRDLIGFG----VEKS 237 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y+K TQ P I E Q T+ +D+A R NLE+ + L+G E + Sbjct: 238 TLALRAAGCLLQYVKDTQRTALPHIRNITVERQQETVIMDAATRRNLELTQNLAGGTENT 297 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D +T G R+ + +P+ D + R +I+ + + P L+ D Sbjct: 298 LASVLDQCVTPMGSRMLKRWLHTPIRDRNVLQNRQQAISALQEIGFELQPF---LRQVGD 354 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSL 431 + R L RL + P+D+A +R + +I + +D P + L+ V +L L Sbjct: 355 LERVLGRLALRSARPRDLARMRHAFQQLPDIHQIMASSDSPYIQALQQRVGHFDELQTLL 414 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 EK + + P RDGG + G A LDE R+L D + + L+++ ++ + L Sbjct: 415 EKAVV----ETPPVLVRDGGVIAPGYHAELDEWRALADGASDYLDRLEIRERDKLGLDTL 470 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 K+ N GY+I+V+ + ++ ++ RQT+ N R+ EL + E+++ + Sbjct: 471 KVGFNAVHGYYIQVSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSK 524 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 AL IE +E L + ++ L +++ ++ +D+ LA A+ NY P + + T Sbjct: 525 GKALAIEKALYEELFDLLLPHLAELQTSAEALSELDVLANLAERAETLNYTCPTLSDKTG 584 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 + GRHP+VE+ L S+PFI+N LS + +L ++TGPNMGGKST++RQ A Sbjct: 585 IQITGGRHPVVEQVL----SEPFISNPLTLS-----SQRRLLIVTGPNMGGKSTYMRQAA 635 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LI ++A +GS+VPA IG VD++F+RVG++D+LASGRSTFMVEM ETA+IL+ AT S Sbjct: 636 LITLLAYIGSFVPAEKVLIGPVDRIFTRVGASDDLASGRSTFMVEMTETANILHNATEHS 695 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + L+ N L Sbjct: 696 LVLMDEIGRGTSTYDGLSLAWACAESLANRIKAMTLFATHYFELTTLPEKLEGVVNIHLD 755 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR 851 + + I F+H V G A SYG+ V LAG+P VI RA LK E L +N Sbjct: 756 AVEHGDTIAFMHSVQEGAASKSYGLAVASLAGVPRDVIKRARQKLKELESL-SNNATAGH 814 Query: 852 LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + P++ L++ VE ++ LN D ++P AL+ +Y +K Sbjct: 815 VDTPQLTL------LTEEVSPAVEALENLNPDTLTPRQALEWIYRLK 855 >gi|256027950|ref|ZP_05441784.1| DNA mismatch repair protein MutS [Fusobacterium sp. D11] gi|289765895|ref|ZP_06525273.1| DNA mismatch repair protein mutS [Fusobacterium sp. D11] gi|289717450|gb|EFD81462.1| DNA mismatch repair protein mutS [Fusobacterium sp. D11] Length = 876 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 312/891 (35%), Positives = 519/891 (58%), Gaps = 38/891 (4%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TP+M+QY +IK P+ ++ YR+GDFYE+FF+DA +AS+ LG+TLTKR K G+D+ Sbjct: 1 MSADTPLMQQYKKIKEEYPNEILMYRLGDFYEMFFEDAKIASKELGLTLTKRNKEKGQDV 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 P+ GVP H+ YI KL++ G+ IAIC+Q+E P A +V+R V R++TPGT+ + Sbjct: 61 PLAGVPYHSVASYIAKLVEKGYSIAICDQVEDPKSAT-----GIVKREVTRVITPGTIID 115 Query: 142 DQLLSPTDSNYL--MAVARIRTEWAIAWIDISTG---IFKISTSNH-DRLISDIMRIDPR 195 L ++NY+ + + I AIA+ DI+TG +F+I N ++ +++I +I Sbjct: 116 VDFLDKNNNNYIACIKINTIENVAAIAYADITTGEFSVFEIKGKNFFEKALAEINKIQAS 175 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ- 254 EI+ EK +++EY L E + + + +ES + Y++I ++D F S+ Sbjct: 176 EILLDEK--TYSEYIELLEERISFTGVKFTKVTNVKKAESYLTSYFDIMSIDVFSLKSKD 233 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSL 314 + +A+A + YI + Q N+ E ++I + + ++ + ++NL ++ + + +L Sbjct: 234 LAISASANLLYYIDELQKGNELPFSKIEYKNIDNIMELNISTQNNLNLVPKKNEEAKGTL 293 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D +T G R + I +P D KI R +++F + +L +++ LK D+ Sbjct: 294 LGVLDDCVTSVGSRELKKIIKNPFLDIEKIRQRQFYVDYFYNDVLLRENVREYLKDIYDI 353 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R ++ G KD+ ++D IR + L ++ +E++ ++ K+ + Sbjct: 354 ERIAGKIIYGTENGKDLLSLKDSIRKSLETYRLLKEH---QEIKNILDIDVKILLDIYNK 410 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + ++ + P R+GG ++DG ++ LDE R + K I ++ + E T IK LKIK Sbjct: 411 IELIIDTEAPFSVREGGIIKDGYNSELDELRKISKLGKDFILEIEQRERERTGIKGLKIK 470 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GYFIEVT ++ ++ +D +I +QT+ N R+ +L + E ++ A + Sbjct: 471 YNKVFGYFIEVTKANEHLVPED------YIRKQTLVNSERYIVPDLKEYEEKVITAKSKI 524 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 +E E F+ L++ I E +SL + IA +DI A +A + +Y +P I + Sbjct: 525 EALEYELFKQLTSEIKEHIDSLYKLANRIANLDIVSNFAHIATKNSYVKPEISEEDILEI 584 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 K GRHPIVE + +S ++ ND L +DKN+ L +LTGPNM GKST+++Q AL + Sbjct: 585 KGGRHPIVETLI---ASGTYVKNDIVL---DDKNN--LIILTGPNMSGKSTYMKQVALNI 636 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMA +GSYV A YA I IVDK+F+RVG++D+L +G+STFM+EM E ASILN ATN+SF++ Sbjct: 637 IMAHIGSYVAADYAKIPIVDKIFTRVGASDDLLTGQSTFMLEMTEVASILNNATNKSFIV 696 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDEIGRGT+T DG+SIA A EY+H + + ATH+HELT+L K L+R N ++V + Sbjct: 697 LDEIGRGTSTYDGISIATAITEYIHNNIGAKTIFATHYHELTELEKELERAINFRVEVKE 756 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE---KLYHHNQKDMR 851 + ++FL +++ G AD SYGI+V +L+G+P V++R+ ILK E L + K + Sbjct: 757 DGKNVVFLREIVKGGADKSYGIEVARLSGVPKEVLNRSNKILKKLETRKNLIENKMKAEQ 816 Query: 852 LYYPEIQTKESKNN----LSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + +E LS+N+ +E +K ++L+ +SPL +L L +K Sbjct: 817 MILFGNGFEEENEEEVEILSENESKVLELLKNMDLNSISPLESLLKLNELK 867 >gi|212692537|ref|ZP_03300665.1| hypothetical protein BACDOR_02034 [Bacteroides dorei DSM 17855] gi|212664822|gb|EEB25394.1| hypothetical protein BACDOR_02034 [Bacteroides dorei DSM 17855] Length = 861 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 310/882 (35%), Positives = 493/882 (55%), Gaps = 38/882 (4%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+Q+ E+K+ +PD+++ +R GDFYE + +DA++AS LGITLTKR K + M G P Sbjct: 1 MMKQFFELKAKHPDAIMLFRCGDFYETYSEDAIVASEILGITLTKRANGQAKSVEMAGFP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H + Y+ KL++ G R+AIC+Q+E P KK LV+R + LVTPG D +LS Sbjct: 61 FHALDTYLPKLVRAGKRVAICDQLEDPKMTKK-----LVKRGITELVTPGVAINDNVLSY 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF--SEKELS 205 ++N+L AV + +A++DISTG F + D + + P+E++F ++ + Sbjct: 116 KENNFLAAVHFGKASCGVAFLDISTGEFLTAEGPFDYIDKLLNNFAPKEVLFERGKRGMF 175 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI- 264 + S F T + F+ S S ++ ++ + FG A+ AI Sbjct: 176 EGNFGSKFFTF-----ELDDWVFNESSSREKLLKHFETKNLKGFGVEHLKNGIVASGAIL 230 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 Y+ TQ I R + + +D +LE++ +++ SLL ID +I+ Sbjct: 231 QYLNMTQHYQIGHITSLSRIEEDRYVRLDKFTVRSLELIGSMNEGG-TSLLDVIDRTISP 289 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 G RL + PL D +N RLD + +F + P I++ L D+ R +S+ +G Sbjct: 290 MGARLLKRWVVFPLKDEKPVNERLDVVEYFFREPDFKEFIEEKLHLIGDLERIVSKAAVG 349 Query: 385 RGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLP 444 R P+++ ++ +++ I N L D LR E+L L S+ + ++ + +D P Sbjct: 350 RISPREVVQLKVALQAIEPIKNACLNAD-NGSLRRIGEQLN-LCLSIREKIAKEVKNDPP 407 Query: 445 TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIE 504 GG + DG +A LDE R + K + +Q + +E T I +LKI +NN GY+IE Sbjct: 408 LLVNKGGVIADGVNAELDELRQIAFSGKDYLLKVQQRESELTGIPSLKIAYNNVFGYYIE 467 Query: 505 VTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEI 564 V ++ + D +I +QT+ N R+ T EL + E +I A + L++E + + Sbjct: 468 VRNTHKDKVPAD------WIRKQTLVNAERYITQELKEYEEKILGAEDKILVLETKLYNE 521 Query: 565 LSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEK 624 L A+ E ++ + IA +D +A A +A+E NY RP++++S ++ GRHP++EK Sbjct: 522 LVIALAEFIPAIQINANQIARLDCLLAFANVARENNYIRPVVEDSEVIDIRQGRHPVIEK 581 Query: 625 TLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684 L + +IAND L D + ++ ++TGPNM GKS LRQ ALI ++AQMGS+VP Sbjct: 582 QLP--VGEKYIANDVFL----DSETQQIIIITGPNMAGKSALLRQTALITLLAQMGSFVP 635 Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744 A A IG+VDK+F+RVG++DN++ G STFMVEM E A+ILN +++S V+ DE+GRGT+T Sbjct: 636 AESARIGMVDKIFTRVGASDNISVGESTFMVEMNEAANILNNLSSRSLVLFDELGRGTST 695 Query: 745 LDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFL 802 DG+SIAWA +E++HE + R L ATH+HEL ++ KS KR N + V + + +IFL Sbjct: 696 YDGISIAWAIVEHIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEIDNKVIFL 755 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKES 862 K+ G ++HS+GI V K+AG+P +++ RA DIL E + Q+ + EI + S Sbjct: 756 RKLERGGSEHSFGIHVAKMAGMPKSIVKRANDILHQLET--DNRQQGIAKPTAEIASGRS 813 Query: 863 KNNLS--KNDKLFVEKIK--CLNLD--EMSPLTALKTLYAVK 898 LS + D + +I+ LNLD ++PL AL L +K Sbjct: 814 GMQLSFFQLDDPVLGQIRDEILNLDVNNLTPLEALNKLNDIK 855 >gi|325299350|ref|YP_004259267.1| DNA mismatch repair protein mutS [Bacteroides salanitronis DSM 18170] gi|324318903|gb|ADY36794.1| DNA mismatch repair protein mutS [Bacteroides salanitronis DSM 18170] Length = 873 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 305/887 (34%), Positives = 494/887 (55%), Gaps = 43/887 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY ++K+ +PD+L+ +R GDFYE + +DA+ AS+ LGITLT+R K + M G Sbjct: 10 TPMMKQYFDLKAKHPDALMLFRCGDFYETYSEDAVTASQILGITLTRRANGQAKTVEMAG 69 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KLI+ G R+AIC+Q+E P KK LV+R + LVTPG D +L Sbjct: 70 FPHHALDTYLPKLIRAGRRVAICDQLEDPKTTKK-----LVKRGITELVTPGVAISDNVL 124 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF--SEKE 203 S ++N+L A+ +T IA++DISTG F + D + + P+E++F +K Sbjct: 125 SYKENNFLAAIHFGKTACGIAFLDISTGEFLTAEGPFDYIDKLLNNFAPKEVLFERGKKP 184 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + + S F T + F + + ++ ++ + FG AA A Sbjct: 185 MFEGNFGSKFFTF-----ELDDWVFTEASAREKLLKHFETKNLKGFGVEHLKNGIIAAGA 239 Query: 264 I-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 I Y+ TQ I R + + + +D +LE++ +++ SLL ID++I Sbjct: 240 ILQYLDMTQHYQIGHITSLARIEEERYVRLDKFTVHSLELISSMNEGG-TSLLDVIDHTI 298 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 + G RL + PL + IN RLD + +F + P + I++ L D+ R +S+ Sbjct: 299 SPMGARLLKRWMVFPLKEVKPINARLDVVEYFFREPDFKDFIEEKLHRIGDLERIVSKAA 358 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 +GR P+++ ++ +++ I N L D E LR E+L L S+ ++ + +D Sbjct: 359 VGRISPREVVQLKVALQAIEPIKNACLNAD-NESLRRIGEQLN-LCVSIRDKIAKEIVND 416 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P GG + DG +A LDE R + K + +Q + E+T I +LKI +NN GY+ Sbjct: 417 PPLLVNKGGVIADGVNAELDELRRISYSGKDYLLQIQQREIEQTGIPSLKIAYNNVFGYY 476 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IEV ++ + + +I +QT+ N R+ T EL + E +I A + L++E + + Sbjct: 477 IEVRNAHKEKVPAE------WIRKQTLVNAERYITQELKEYEEKILGAEDKILVLETKLY 530 Query: 563 EILSNAIIEQSESLD-NASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 L + E ++ NA+Q IA +D ++ A +A+E Y RP++ + +K GRHP+ Sbjct: 531 NDLVADLAEFIPAIQINATQ-IARLDCLLSFADVARENKYIRPVVADDDVLDIKQGRHPV 589 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 +EK L + +IAND L D S ++ ++TGPNM GKS LRQ ALI ++AQ+G Sbjct: 590 IEKQLP--VGEKYIANDVYL----DTESQQIIIITGPNMAGKSALLRQTALITLLAQIGC 643 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA AHIG+VDK+F+RVG++DN++ G STFMVEM E A+ILN + +S V+ DE+GRG Sbjct: 644 FVPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAANILNNLSPRSLVLFDELGRG 703 Query: 742 TATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 T+T DG+SIAWA +E++HE + R L ATH+HEL D+ R N + V + N + Sbjct: 704 TSTYDGISIAWAIVEHIHENKKAHARTLFATHYHELNDMEALFPRIKNYNVTVKEVNNKV 763 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 IFL K+ G ++HS+GI V K+AG+P +++ RA +IL E+ N+++ + P++Q Sbjct: 764 IFLRKLERGGSEHSFGIHVAKMAGMPQSIVKRADEILHRLEQ---ENRQEGMVSRPKVQA 820 Query: 860 KESKNNLSKNDKLFVEKIKC--------LNLDEMSPLTALKTLYAVK 898 K+ + + + + C L+++ ++P+ AL L +K Sbjct: 821 SAPKDGVQLSFFQLDDPVLCQIRDEILHLDVNNLTPIEALNKLNDIK 867 >gi|320106339|ref|YP_004181929.1| DNA mismatch repair protein MutS [Terriglobus saanensis SP1PR4] gi|319924860|gb|ADV81935.1| DNA mismatch repair protein MutS [Terriglobus saanensis SP1PR4] Length = 889 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 330/905 (36%), Positives = 499/905 (55%), Gaps = 67/905 (7%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 + TP+MRQ+ K +PD L+F+RMGDFYELF+DDA+L +R L I+LT R + K IPM Sbjct: 17 TQTPVMRQFFAAKQAHPDCLLFFRMGDFYELFYDDAILVARELQISLTARDRE--KAIPM 74 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVP H A +Y+QKL++ G+RIA+CEQ+E P + K+LVRR V R++TPGT D Sbjct: 75 CGVPYHAAENYLQKLLRRGYRIAMCEQLEDP-----KLTKTLVRRGVTRVLTPGTAL-DS 128 Query: 144 LLSPTDSNYLMAVA-RIRTEWA-IAWIDISTGIFKISTSNHDR-----LISDIMRIDPRE 196 L+ D+ +L A+ +++ A +A +D+STG F+ +T H + + ++ R+ PRE Sbjct: 129 SLAANDNTFLAALTLNTKSDAAGVAALDLSTGEFR-ATEFHGKSAIKEAVDELHRLAPRE 187 Query: 197 IIFSEKELSHAEYKSLF----ETLGNVAVAQP--NVFFDHSISESRIADYYNITTVDTFG 250 I+ + + +L ETL A P + F + + ++ ++D FG Sbjct: 188 ILLATNLRLGSAQTTLNGEEDETLPAAATKTPLEDWVFTADYALPLLQQHFRANSLDGFG 247 Query: 251 -SFSQVEKTAAAAAISYIKKTQ---MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL 306 TAA A + Y++ T + + ++GY ER + L +D+ + NLE+ L Sbjct: 248 LGTHASAATAAGALLHYLRATHHEDLEHLDSLGYYER---ATCLELDAVSVRNLELTEPL 304 Query: 307 -SG-SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPI 364 SG S + +LL T+D T G RL + P D +I RLDS+ + + Sbjct: 305 FSGESNQTTLLYTLDACRTPMGKRLLRSTLLRPSIDPMQIAARLDSVAEAHASLPKRETL 364 Query: 365 QKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVE-- 422 ++ L D+ R L+R+ + P+D+ + + + LP L GA E Sbjct: 365 RRALDGILDLERLLARIALDSAGPRDVVALCRTLSA------------LPGVLYGAKEFS 412 Query: 423 --KLKKLPQSLEK------TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRI 474 + L Q + + L +D P +G + DA +DE R L + Sbjct: 413 QGRWSALTQEFDTLEELCGQIGRTLVEDPPLKLGEGDAIAQNVDAEMDELRGLSRSGRES 472 Query: 475 IASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTR 534 IA+++ + E T I +LK++ N+ GY++E+T S+ + + D E K QT+ N R Sbjct: 473 IAAIEDRERERTGISSLKVRFNSVFGYYLEITKSNLANVPADYERK------QTLVNAER 526 Query: 535 FTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAI 594 FTT EL D E +I A + IE F L I+E + + ++ +A ID+ A Sbjct: 527 FTTPELKDYERKILTAQDRIAEIERRIFVDLRRTILEAAHRMRETARRVAEIDLLANFAH 586 Query: 595 LAKEQNYCRPIID-NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLW 653 LA +N+ RP+I+ +ST + RHP+VE L++ + F N L N + L Sbjct: 587 LAALRNWTRPVIEEDSTVLEFTEARHPVVELRLEESALGRFTPNSGFLDATNGPS---LA 643 Query: 654 LLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTF 713 L+TGPNMGGKST+LR A++ +MAQ G +VPA+ IG+VD++F+R+G++DN+A GRSTF Sbjct: 644 LITGPNMGGKSTYLRMAAMLAVMAQCGCFVPAASLRIGLVDRIFTRIGASDNVARGRSTF 703 Query: 714 MVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFH 773 MVEM ETA+ILN AT +S ++LDE+GRGTAT DGLS+AWAT+E+LH R L ATH+H Sbjct: 704 MVEMTETAAILNTATARSLILLDEMGRGTATYDGLSLAWATVEHLHNKIGARTLFATHYH 763 Query: 774 ELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAY 833 ELT L + L R N + ++ GI+FLH V G AD SYGI+V KLAGLP VI RA Sbjct: 764 ELTLLHEQLTRLTNLRVACRETPTGIVFLHTVESGAADRSYGIEVAKLAGLPREVIDRAR 823 Query: 834 DILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKT 893 +LK EK+ P +Q + + V++++ L++D M+P+ AL+ Sbjct: 824 SVLKLHEKVETQQVHAQAAPAPSMQM----TIFTPLSQRVVDRVRELDVDRMTPMEALQL 879 Query: 894 LYAVK 898 L +K Sbjct: 880 LSELK 884 >gi|53719861|ref|YP_108847.1| DNA mismatch repair protein MutS [Burkholderia pseudomallei K96243] gi|81690299|sp|Q63SR9|MUTS_BURPS RecName: Full=DNA mismatch repair protein mutS gi|52210275|emb|CAH36254.1| DNA mismatch repair protein [Burkholderia pseudomallei K96243] Length = 890 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 307/882 (34%), Positives = 459/882 (52%), Gaps = 39/882 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ IKS +PD+LVFYRMGDFYELFF+DA A+R L +TLT+RG G I M G Sbjct: 21 TPMMQQYLRIKSEHPDTLVFYRMGDFYELFFEDAEKAARLLDLTLTQRGASAGTPIKMAG 80 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H Y+ KL+K G AICEQI P +K V R VVR+VTPGTLT+ LL Sbjct: 81 VPHHAVEQYLAKLVKFGESAAICEQIGDPAT-----SKGPVERKVVRVVTPGTLTDAALL 135 Query: 146 SPTDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 S +L+A+ + + +AW+++++G +++ D+L + + RI P EI+ Sbjct: 136 SDKSDVFLLALCVGHNKRGVASNIGLAWLNLASGALRLAELAPDQLGAALERIRPAEILA 195 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 ++ + +S+ +G + P FD + R+ D + ++D FG+ + Sbjct: 196 ADGTI-----ESVPAGMGAITRV-PAWHFDIASGTQRLCDQLEVASLDGFGAQALTSANG 249 Query: 260 AAAAIS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA A+ Y TQ + + E+ + +D + R NLE+ TL G+ +L + Sbjct: 250 AAGALLIYAAATQGQQLRHVRSLKVENESEYIGLDPSTRRNLELTETLRGTESPTLYSLL 309 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP--ILINPIQKILKSSPDVPR 376 D T G RL + P S R +I + P ++ ++ L+ DV R Sbjct: 310 DTCCTAMGSRLLRHWLHHPPRASVAAQARHQAIGALLDAPPNAGLDSLRSALRQIADVER 369 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 RL + P+D++ +RD + + + G +E + P L+ Sbjct: 370 ITGRLALLSARPRDLSSLRDTFAALPALRERVAEIASNAAALGRLEAALEPPPGCLDLLT 429 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 ++ + RDGG + G DA LDE R + + + + L+ + T I NL++++N Sbjct: 430 RAIAAEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLETRERARTGISNLRVEYN 489 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 G++IEVT + D + RQT+ N R+ T EL E++ +A AL Sbjct: 490 KVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTFEDKALSAQERALA 543 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 E ++ + A++ E + +A +D+ A A A+ ++ P + + Sbjct: 544 RERALYDGVLQALLPHIEGCQRVASGLAELDLLAAFAERARTLDWVAPEFTDEIGIEIDQ 603 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE ++Q FIANDC L+ KL L+TGPNMGGKSTF+RQ ALI +M Sbjct: 604 GRHPVVEAQVEQ-----FIANDCALN-----PERKLLLITGPNMGGKSTFMRQTALIALM 653 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+ILN AT S V++D Sbjct: 654 AYVGSYVPAKAARFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILNDATPHSLVLMD 713 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DGL++AWA +L NRC L ATH+ ELT L + N L + Sbjct: 714 EIGRGTSTFDGLALAWAIARHLLSHNRCYTLFATHYFELTQLPAEFPQAANVHLSAVEHG 773 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN---QKDMRLY 853 GI+FLH V G A+ SYG+QV +LAG+P VI A L E+ Q D+ Sbjct: 774 HGIVFLHAVEEGPANQSYGLQVAQLAGVPAPVIRAARKHLAHLEQQSAAQATPQLDLFAA 833 Query: 854 YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 P + E + +E++ L+ D++ P AL LY Sbjct: 834 PPVVDEPECNEPPAATPHPALERLLELDPDDLKPRDALDLLY 875 >gi|22124746|ref|NP_668169.1| DNA mismatch repair protein MutS [Yersinia pestis KIM 10] gi|45440190|ref|NP_991729.1| DNA mismatch repair protein MutS [Yersinia pestis biovar Microtus str. 91001] gi|108810904|ref|YP_646671.1| DNA mismatch repair protein MutS [Yersinia pestis Nepal516] gi|145600263|ref|YP_001164339.1| DNA mismatch repair protein MutS [Yersinia pestis Pestoides F] gi|153997602|ref|ZP_02022702.1| DNA mismatch repair protein MutS [Yersinia pestis CA88-4125] gi|162418943|ref|YP_001605520.1| DNA mismatch repair protein MutS [Yersinia pestis Angola] gi|165925876|ref|ZP_02221708.1| DNA mismatch repair protein MutS [Yersinia pestis biovar Orientalis str. F1991016] gi|165936708|ref|ZP_02225275.1| DNA mismatch repair protein MutS [Yersinia pestis biovar Orientalis str. IP275] gi|166010151|ref|ZP_02231049.1| DNA mismatch repair protein MutS [Yersinia pestis biovar Antiqua str. E1979001] gi|166212949|ref|ZP_02238984.1| DNA mismatch repair protein MutS [Yersinia pestis biovar Antiqua str. B42003004] gi|167421538|ref|ZP_02313291.1| DNA mismatch repair protein MutS [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423797|ref|ZP_02315550.1| DNA mismatch repair protein MutS [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469363|ref|ZP_02334067.1| DNA mismatch repair protein MutS [Yersinia pestis FV-1] gi|218930372|ref|YP_002348247.1| DNA mismatch repair protein MutS [Yersinia pestis CO92] gi|229838980|ref|ZP_04459139.1| methyl-directed mismatch repair protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229899547|ref|ZP_04514688.1| methyl-directed mismatch repair protein [Yersinia pestis biovar Orientalis str. India 195] gi|229901117|ref|ZP_04516240.1| methyl-directed mismatch repair protein [Yersinia pestis Nepal516] gi|270489296|ref|ZP_06206370.1| DNA mismatch repair protein MutS [Yersinia pestis KIM D27] gi|25453131|sp|Q8ZBQ3|MUTS_YERPE RecName: Full=DNA mismatch repair protein mutS gi|123246704|sp|Q1CLQ9|MUTS_YERPN RecName: Full=DNA mismatch repair protein mutS gi|166232151|sp|A4TQ04|MUTS_YERPP RecName: Full=DNA mismatch repair protein mutS gi|238687278|sp|A9R111|MUTS_YERPG RecName: Full=DNA mismatch repair protein mutS gi|21957565|gb|AAM84420.1|AE013686_3 methyl-directed mismatch repair protein [Yersinia pestis KIM 10] gi|45435046|gb|AAS60606.1| DNA mismatch repair protein MutS [Yersinia pestis biovar Microtus str. 91001] gi|108774552|gb|ABG17071.1| DNA mismatch repair protein MutS [Yersinia pestis Nepal516] gi|115348983|emb|CAL21943.1| DNA mismatch repair protein MutS [Yersinia pestis CO92] gi|145211959|gb|ABP41366.1| DNA mismatch repair protein MutS [Yersinia pestis Pestoides F] gi|149289239|gb|EDM39319.1| DNA mismatch repair protein MutS [Yersinia pestis CA88-4125] gi|162351758|gb|ABX85706.1| DNA mismatch repair protein MutS [Yersinia pestis Angola] gi|165915357|gb|EDR33967.1| DNA mismatch repair protein MutS [Yersinia pestis biovar Orientalis str. IP275] gi|165922488|gb|EDR39665.1| DNA mismatch repair protein MutS [Yersinia pestis biovar Orientalis str. F1991016] gi|165991058|gb|EDR43359.1| DNA mismatch repair protein MutS [Yersinia pestis biovar Antiqua str. E1979001] gi|166205736|gb|EDR50216.1| DNA mismatch repair protein MutS [Yersinia pestis biovar Antiqua str. B42003004] gi|166960457|gb|EDR56478.1| DNA mismatch repair protein MutS [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167057967|gb|EDR67713.1| DNA mismatch repair protein MutS [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229681842|gb|EEO77935.1| methyl-directed mismatch repair protein [Yersinia pestis Nepal516] gi|229687039|gb|EEO79114.1| methyl-directed mismatch repair protein [Yersinia pestis biovar Orientalis str. India 195] gi|229695346|gb|EEO85393.1| methyl-directed mismatch repair protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|270337800|gb|EFA48577.1| DNA mismatch repair protein MutS [Yersinia pestis KIM D27] gi|320016549|gb|ADW00121.1| methyl-directed mismatch repair protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 851 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 314/889 (35%), Positives = 488/889 (54%), Gaps = 55/889 (6%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 + L S TPMM+QY+ +K+ +P+ L+FYRMGDFYELF+ DA AS+ L I+LTKRG G+ Sbjct: 5 DKLDSHTPMMQQYLRLKAQHPEILLFYRMGDFYELFYSDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H+ +Y+ KL+++G AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGVPYHSIENYLAKLVQLGESAAICEQIGDPATSK-----GPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F+++ ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDAKGFGYATLDISSGRFRVAEPADLETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 + E + E SL E + +P F+ ++ ++ + + FG + + Sbjct: 180 YPE----NFEPMSLIEHRHGLR-RRPLWEFELDTAKQQLNLQFGTRDLIGFGVEQAHLAL 234 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA + Y+K TQ + P I E Q + +D+A R NLE+ + LSG E +L Sbjct: 235 RAAGCLLQYVKDTQRTSLPHIRGLTMERQQDGIIMDAATRRNLELTQNLSGGSENTLAAI 294 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D S+T G R+ + P+ D + R +I +Q+ + +Q L+ D+ R Sbjct: 295 LDCSVTPMGSRMLKRWLHMPIRDIRVLTDRQQAIGG-LQD--IAAELQTPLRQVGDLERI 351 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKTL 435 L+RL + P+D+A +R + I L D+P + L V + +L LE+ + Sbjct: 352 LARLALRTARPRDLARMRHAFQQLPEIHRLLQPIDVPHVQNLLSQVGQFDELQDLLERAI 411 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + P RDGG + G +A LDE R+L D + + L+++ E+ + LK+ Sbjct: 412 V----ETPPVLVRDGGVIASGYNAELDEWRALADGATDYLDRLEIREREKLGLDTLKVGF 467 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+I+V+ + ++ ++ RQT+ N R+ EL + E+++ + AL Sbjct: 468 NGVHGYYIQVSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSKGKAL 521 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 IE +E + + ++ L ++ +A +D+ LA A+ NY P + + + Sbjct: 522 AIEKGLYEEIFDLLLPHLPELQLSANALAELDVLANLAERAETLNYSCPTLSDKPGIKIM 581 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ LK+ PFI+N LS ++ ++TGPNMGGKST++RQ ALIV+ Sbjct: 582 GGRHPVVEQVLKE----PFISNPLTLSPQR-----RMLIITGPNMGGKSTYMRQTALIVL 632 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +A +GSYVPA A IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT QS V++ Sbjct: 633 LAHLGSYVPADQATIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEQSLVLM 692 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 693 DEIGRGTSTYDGLSLAWACAENLASRIKAMTLFATHYFELTTLPEKMEGVVNVHLDALEH 752 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH------NQKD 849 E I F+H V G A SYG+ V LAG+P VI RA LK E L ++ + Sbjct: 753 GETIAFMHSVQEGAASKSYGLAVAALAGVPRDVIKRARQKLKELESLSNNAAASTIDGSQ 812 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 M L EI VE ++ L+ D +SP AL+ +Y +K Sbjct: 813 MTLLNEEIPPA-------------VEALEALDPDSLSPRQALEWIYRLK 848 >gi|222151137|ref|YP_002560291.1| DNA mismatch repair protein MutS [Macrococcus caseolyticus JCSC5402] gi|254766632|sp|B9EBI4|MUTS_MACCJ RecName: Full=DNA mismatch repair protein mutS gi|222120260|dbj|BAH17595.1| DNA mismatch repair protein MutS [Macrococcus caseolyticus JCSC5402] Length = 846 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 311/893 (34%), Positives = 508/893 (56%), Gaps = 65/893 (7%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + TPMM QY+++K D ++F+R+GDFYE+F++DA L ++ L ITLT+R K +I Sbjct: 1 MSKPTPMMTQYLQMKEQYKDCILFFRLGDFYEMFYEDAELTAKELEITLTRRDK--KNNI 58 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A YI++LI+ G+++AI EQ+E P + K +V+R VV+++TPGT+ + Sbjct: 59 PMCGVPHHSAKVYIERLIEKGYKVAIAEQMEDPKQVK-----GMVKREVVKIITPGTVMD 113 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 D ++S +SNY+ ++ + +A+ D+STG K++ N D +++++ ++P+EII + Sbjct: 114 D-MISENESNYIASIHH-EEGFTLAYSDVSTGELKVTQLNEDEMLNELSSVNPKEIITN- 170 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 L E L N +V ++ DTF V+++ Sbjct: 171 --------IDLNEVLINKIKMITDVISRFEVN-------------DTFKQADGVDQSLQP 209 Query: 262 AA---ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKT 317 A +SYI+ TQM I + + +D A+ NLE+ ++ +++ +LL Sbjct: 210 AVNLLLSYIQYTQMRALAHIDEAVYYEPVHYMRLDMYAKRNLELTESIRHKNKKGTLLSI 269 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 + T G RL E I PL + +I R + + F N IL + +++ L D+ R Sbjct: 270 FNQCKTPMGNRLVKEWIERPLLNRQEIEERHNGVELFNDNFILRHQLREALTHVYDIERL 329 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 R++ G KD+ ++ + I +L ++D E+ ++ + L Q L L + Sbjct: 330 AGRVQFGNVSAKDLVQLKYSLEQLPMIQSLLKEHD---EVIRTLDNIDAL-QPLYDMLEA 385 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 L D+ PT +DGG +DG + +DE R K+ + LQ K E T +K+LKI +N Sbjct: 386 SLLDEAPTSIKDGGIFKDGFNNDVDELRYASKNGKQWLNELQAKERERTGVKSLKIGYNK 445 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IE+ S A+++ D+++ + +QT+SN RF T EL + E+ I A + + Sbjct: 446 VFGYYIEI--SKANLVNLDVDAFG-YTRKQTLSNAERFITEELKEKESLILGAEEKLMNL 502 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E E F L + + +L ++ IA++D + +A + Y +PII + ++D Sbjct: 503 EYELFIQLRDFVKTFILNLKQQAKNIAVLDCLQNFSEVATKHQYIKPIISGTKVLNIEDA 562 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE +++ ++ANDC L + ++L+TGPNM GKST++RQ ALI IMA Sbjct: 563 RHPVVETVMERDQ---YVANDCKLD-----DHTFIYLITGPNMSGKSTYMRQVALISIMA 614 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 QMG++VPASYA + I D++F+R+G+AD+L SG+STFMVEM+E + L AT+ S +I DE Sbjct: 615 QMGAFVPASYAEVPIFDQIFTRIGAADDLVSGQSTFMVEMLEAKNALQNATDNSLIIFDE 674 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGT+T DGLS+A + IEY+H + L +TH+HEL DL ++L +N + + N Sbjct: 675 IGRGTSTYDGLSLAQSMIEYVHNKIGAKTLFSTHYHELVDLEQTLDGLNNIHVAAKEYNG 734 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DMRL 852 +IFLHKV+PG +HSYGI V KLA LP +I R+ ++L FE HN+K ++ Sbjct: 735 ELIFLHKVMPGAVEHSYGIHVAKLAQLPAEIIERSSELLDEFE----HNEKVRKGDSNKI 790 Query: 853 YYP-----EIQTKES-KNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 P EI+ + + K N + L +++IK +++DE++P+ AL L +K+ Sbjct: 791 IQPSFNLFEIENENTNKYNANHEHDLIIQQIKDISIDELTPIEALLKLQEIKS 843 >gi|299144077|ref|ZP_07037157.1| DNA mismatch repair protein MutS [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518562|gb|EFI42301.1| DNA mismatch repair protein MutS [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 868 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 321/910 (35%), Positives = 516/910 (56%), Gaps = 96/910 (10%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY+EIK + D ++F+R+GDFYE+FF+DA++AS+ L ITLTKR G++ PMCGVP Sbjct: 1 MMEQYLEIKKKHKDEILFFRLGDFYEMFFEDAIIASKELEITLTKRSST-GENTPMCGVP 59 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A+ YI KLI G+++AIC+Q+E P AK ++V+R V ++VTPGT T+ L Sbjct: 60 YHVADSYISKLINKGYKVAICDQMEDPKLAK-----TIVKREVTKIVTPGTFTDFNYLKK 114 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-------DRLISDIMRIDPREII-- 198 ++NYL+ +++ D STG ++ D I++ RI+P EI+ Sbjct: 115 DENNYLLCTVINNNSIYLSYTDYSTGELYTTSKTFFNFNELLDFFINECYRINPSEILIN 174 Query: 199 ------------FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTV 246 FS +++ E +E++ ++ + I+ + D N+ T Sbjct: 175 RIKNKKLNSILTFSNLYINYIE--DFYESIHDIEFTNEEISL---INNNIFNDIENLKTT 229 Query: 247 DTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPER---EDIQSTLFIDSAARSNLEIL 303 + +S + I Y+ KTQ K ++G+ + L +D +++ NLE++ Sbjct: 230 NKISDYSSI-----YILIKYLIKTQ---KDSLGHLNSIIYYNSDEYLLLDESSKRNLELV 281 Query: 304 RTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILIN 362 + + +G++ QSLL+ +D + T G R + I PL + IN R D IN ++ +L++ Sbjct: 282 KGINTGNKSQSLLEILDKTKTSMGSRELKKWIEEPLLNECAINDRFDKINELKRDLLLLD 341 Query: 363 PIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVE 422 ++ LK D+ R ++ PK+I + + S NI N+ + +D ++ A E Sbjct: 342 DLKLQLKEIYDIERLSVKISNRTITPKEIISLLISLNSIKNIKNILISSDNLTLIKIA-E 400 Query: 423 KLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L S+ K ++ ++ DD P + F++ G LDE + ++ + I SL+ K Sbjct: 401 SLDSLA-SIRKRIADIIIDDPPVNIDENRFIKTGYSTELDELFAASEKGREWILSLEDKE 459 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 + T IK LKIK+N LGYFIEVT S ++ + KD +I +QT+ R+ ++EL + Sbjct: 460 RKRTSIKGLKIKYNKILGYFIEVTKSYSNQVPKD------YIRKQTLVGSERYFSIELKE 513 Query: 543 LENRITNATNSALLIELESF----EILSNAIIEQSESLDNASQVIAIIDISIALAILAKE 598 +E+++ ++ A +++E + E L+N II+ + N S+ +D+ ++L +A + Sbjct: 514 MESKLLSSKGEAFKLQMEIYKSLKEFLANNIIQIQKVAKNISK----LDVLVSLCTVAID 569 Query: 599 QNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGP 658 NY RP I+ + +K+GRHPIVE L+++ F+ ND L D N+ + ++TGP Sbjct: 570 NNYVRPSINKNGIIEIKNGRHPIVELKLQEE---LFVPNDTLL----DTNNNLIHIITGP 622 Query: 659 NMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMI 718 NM GKST++RQ A+IVIMA MGSYVP A+I +VDK+F+R+G++DNLA G STFMVEM Sbjct: 623 NMAGKSTYMRQVAIIVIMAHMGSYVPCESANISLVDKIFTRIGASDNLAKGDSTFMVEMK 682 Query: 719 ETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDL 778 E A+I+ AT S +ILDE+GRGT+T DGLSIAWA +EYL + L ATH+HEL +L Sbjct: 683 EVANIVKNATKNSLIILDEVGRGTSTYDGLSIAWALVEYLVTNIHAKTLFATHYHELVNL 742 Query: 779 SKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKT 838 S +N T+ V N+ I+FL K++ G +++SYGI V KLAG+ + +I R+ +IL+ Sbjct: 743 SNKYNNINNLTISVEKQNDSIVFLRKIVEGFSNNSYGIDVAKLAGINDFIIQRSNEILE- 801 Query: 839 FEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKL--------------FVEKIKCLNLDE 884 + N +DM + KNN++K DK+ F++K+ LN++ Sbjct: 802 ----FIQNNEDMNI----------KNNIAKKDKIKVSQKTIFDMKKDEFLKKLSTLNINS 847 Query: 885 MSPLTALKTL 894 +SP+ AL L Sbjct: 848 LSPIEALNLL 857 >gi|330807814|ref|YP_004352276.1| DNA mismatch repair protein, MutS Family domain V [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375922|gb|AEA67272.1| DNA mismatch repair protein, MutS Family domain V [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 859 Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust. Identities = 313/885 (35%), Positives = 484/885 (54%), Gaps = 42/885 (4%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L S TPMM+QY +K+ +PD L+FYRMGDFYE+F++DA A++ L ITLT RG+ G Sbjct: 7 DLSSHTPMMQQYWRLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGMA 66 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCG+P H A Y+ KL+K+G + ICEQ+ P +K V R VVR++TPGT++ Sbjct: 67 IPMCGIPYHAAEGYLAKLVKLGESVVICEQVGDPAT-----SKGPVERQVVRIITPGTVS 121 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIF 199 ++ LL N + AV + +A +DI++G F + + L++++ R++P E++ Sbjct: 122 DEALLDERRDNLIAAVLGDERLFGLAVLDITSGNFSVLEIKGWENLLAELERVNPVELLI 181 Query: 200 SE---KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 + K+L + + V P F S +S + ++ + FG + Sbjct: 182 PDDWPKDLPAEKRR-------GVRRRAPWDFERDSALKS-LCQQFSTQDLKGFGCENLTL 233 Query: 257 KTAAAAA-ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA ++Y K+TQ P + E + T+ +D A+R NLE+ L+G R+ +L Sbjct: 234 AIGAAGCLLAYAKETQRTALPHLRSLRHERLDDTVVLDGASRRNLELDTNLAGGRDNTLQ 293 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D T G RL + PL D T + R SI + +Q LK D+ Sbjct: 294 SVVDRCQTAMGSRLLTRWLNRPLRDLTVLLARQSSITCLLDR-YRFEQLQPQLKEIGDIE 352 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R L+R+ + P+D+A +RD + + L + + + L+ P+ L L Sbjct: 353 RILARIGLRNARPRDLARLRDAL-GALPELQVAMTDLEAPHLQQLARTTSTYPE-LAALL 410 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + D+ P RDGG L+ G DA LDE ++L + + + + L+ + T + NLK+ + Sbjct: 411 EKAIIDNPPAVIRDGGVLKTGYDAELDELQALSENAGQFLIDLEAREKARTGLANLKVGY 470 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GYFIE+ S A D ++ RQT+ RF T EL E++ +A + AL Sbjct: 471 NRIHGYFIELPSKQAEQAPAD------YVRRQTLKGAERFITPELKAFEDKALSAKSRAL 524 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 E +E L +I Q L + + +A +D+ LA A + P + + Sbjct: 525 AREKMLYEALLEDLISQLPPLQDTAGALAELDVLSNLAERALNLDLNCPRFVSEPCMRIS 584 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ L + PF+AND L D N+ ++ ++TGPNMGGKST++RQ ALIV+ Sbjct: 585 QGRHPVVEQVL----TTPFVANDLSL----DDNT-RMLVITGPNMGGKSTYMRQTALIVL 635 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +A +GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT +S V++ Sbjct: 636 LAHIGSFVPAASCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSLVLM 695 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGT+T DGLS+AWA E L R L ATH+ ELT L +S N L ++ Sbjct: 696 DEVGRGTSTFDGLSLAWAAAERLAHL-RAYTLFATHYFELTVLPESQPLVANVHLNATEH 754 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--KLYHHNQKDMRLY 853 NE I+FLH V+PG A SYG+ V +LAG+P+ VI+RA + L E L H + + Sbjct: 755 NERIVFLHHVLPGPASQSYGLAVAQLAGVPSEVITRAREHLSRLETTSLPHEAPRPTKGK 814 Query: 854 YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 Q + +L ++++ L+LD+++P AL LY +K Sbjct: 815 PAAPQQSDLFASLPHP---VLDELAKLDLDDLTPRRALDLLYTLK 856 >gi|76808909|ref|YP_334077.1| DNA mismatch repair protein MutS [Burkholderia pseudomallei 1710b] gi|254259362|ref|ZP_04950416.1| DNA mismatch repair protein MutS [Burkholderia pseudomallei 1710a] gi|76578362|gb|ABA47837.1| DNA mismatch repair protein MutS [Burkholderia pseudomallei 1710b] gi|254218051|gb|EET07435.1| DNA mismatch repair protein MutS [Burkholderia pseudomallei 1710a] Length = 938 Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust. Identities = 307/882 (34%), Positives = 459/882 (52%), Gaps = 39/882 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ IKS +PD+LVFYRMGDFYELFF+DA A+R L +TLT+RG G I M G Sbjct: 69 TPMMQQYLRIKSEHPDTLVFYRMGDFYELFFEDAEKAARLLDLTLTQRGASAGTPIKMAG 128 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H Y+ KL+K G AICEQI P +K V R VVR+VTPGTLT+ LL Sbjct: 129 VPHHAVEQYLAKLVKFGESAAICEQIGDPAT-----SKGPVERKVVRVVTPGTLTDAALL 183 Query: 146 SPTDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 S +L+A+ + + +AW+++++G +++ D+L + + RI P EI+ Sbjct: 184 SDKSDVFLLALCVGHNKRGVASNIGLAWLNLASGALRLAELAPDQLGAALERIRPAEILA 243 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 ++ + +S+ +G + P FD + R+ D + ++D FG+ + Sbjct: 244 ADGTI-----ESVPAGMGAITRV-PAWHFDIASGTQRLCDQLEVASLDGFGAQALTSANG 297 Query: 260 AAAAIS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA A+ Y TQ + + E+ + +D + R NLE+ TL G+ +L + Sbjct: 298 AAGALLIYAAATQGQQLRHVRSLKVENESEYIGLDPSTRRNLELTETLRGTESPTLYSLL 357 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP--ILINPIQKILKSSPDVPR 376 D T G RL + P S R +I + P ++ ++ L+ DV R Sbjct: 358 DTCCTAMGSRLLRHWLHHPPRASVAAQARHQAIGALLDAPPNAGLDSLRSALRQIADVER 417 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 RL + P+D++ +RD + + + G +E + P L+ Sbjct: 418 ITGRLALLSARPRDLSSLRDTFAALPALRERVAEIASNAAALGRLEAALEPPPGCLDLLT 477 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 ++ + RDGG + G DA LDE R + + + + L+ + T I NL++++N Sbjct: 478 RAIAAEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLETRERARTGISNLRVEYN 537 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 G++IEVT + D + RQT+ N R+ T EL E++ +A AL Sbjct: 538 KVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTFEDKALSAQERALA 591 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 E ++ + A++ E + +A +D+ A A A+ ++ P + + Sbjct: 592 RERALYDGVLQALLPHIEGCQRVASGLAELDLLAAFAERARTLDWVAPEFTDEIGIEIDQ 651 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE ++Q FIANDC L+ KL L+TGPNMGGKSTF+RQ ALI +M Sbjct: 652 GRHPVVEAQVEQ-----FIANDCALN-----PERKLLLITGPNMGGKSTFMRQTALIALM 701 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+ILN AT S V++D Sbjct: 702 AYVGSYVPAKAARFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILNDATPHSLVLMD 761 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DGL++AWA +L NRC L ATH+ ELT L + N L + Sbjct: 762 EIGRGTSTFDGLALAWAIARHLLSHNRCYTLFATHYFELTQLPVEFPQAANVHLSAVEHG 821 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN---QKDMRLY 853 GI+FLH V G A+ SYG+QV +LAG+P VI A L E+ Q D+ Sbjct: 822 HGIVFLHAVEEGPANQSYGLQVAQLAGVPAPVIRAARKHLAHLEQQSAAQATPQLDLFAA 881 Query: 854 YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 P + E + +E++ L+ D++ P AL LY Sbjct: 882 PPVVDEPECNEPPAATPHPALERLLELDPDDLKPRDALDLLY 923 >gi|116872835|ref|YP_849616.1| DNA mismatch repair protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|123463760|sp|A0AIK5|MUTS_LISW6 RecName: Full=DNA mismatch repair protein mutS gi|116741713|emb|CAK20837.1| DNA mismatch repair protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 860 Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust. Identities = 314/894 (35%), Positives = 503/894 (56%), Gaps = 61/894 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+EIK D+ +F+R+GDFYE+FF+DAL AS+ L ITLT R + IPMCG Sbjct: 5 TPMIKQYLEIKDKYQDAFLFFRLGDFYEMFFEDALNASQILEITLTGREGGTKEKIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A+ YI LI+ G+++AICEQ+E P + K +V+R VV+L++PGT+ +++ L Sbjct: 65 VPYHSASGYIDTLIEKGYKVAICEQVEDP-----KTTKGMVKREVVQLISPGTVMDERGL 119 Query: 146 SPTDSNYLMAVARIR-TEWAIAWIDISTGIFK--ISTSNHDRLISDIMRIDPREIIFSEK 202 ++NY+ ++ E+ A+ D+STG K + ++ DRLI+++ + RE+I SE Sbjct: 120 KAKENNYIASLYCYEGKEYGFAYSDLSTGELKSTVIEASEDRLINELTTLSTRELIVSES 179 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 E + L +V Q + F S+ E N V S S EK A Sbjct: 180 EKT---------VLSDVMKEQLGLTF--SVHEEDTIPSENEKLVTRHMSLS--EKRAIGK 226 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDYS 321 + Y+K+TQ + + + + + +D ++ NLE+ ++ G R+ +LL +D + Sbjct: 227 LLHYLKETQKRDLGHLQQAVHYETSNYMKMDYYSKRNLELAESIRGKGRQGTLLWLLDNT 286 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSI-----NFFIQNPILINPIQKILKSSPDVPR 376 T GGR+ + I PL D KI R + + NFF + ++ N LK+ D+ R Sbjct: 287 QTAMGGRMLKQWIDRPLIDRKKIIERQNDVSELMANFFERLELVEN-----LKNVYDLER 341 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R+ G +D+ +R+ + I L + + EL ++ ++L + LE+ Sbjct: 342 LAGRVAYGNVNARDLIQLRNSLYQIPRIRATLLSMNSKSLTELANQLDPCEQLTEKLEEA 401 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + D P R+GG ++DG ++ LD R K IA L+ K E T IK +K+ Sbjct: 402 IM----DSAPISIREGGIIKDGYNSQLDTYRDASRNGKTWIAELERKERELTGIKTMKVG 457 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N GY+IEVT ++ +L + R+ +QT++N R+ T EL + E I +A + Sbjct: 458 FNRVFGYYIEVTRANTHLL-----PEGRYERKQTLTNAERYITPELKEKEKLILDAEEKS 512 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E F + + + E L ++ ++ ID + A ++++ ++ RP + + V Sbjct: 513 MELEYLLFTEVREMVKDYIERLQKLAKSVSEIDCLQSFADISEKNHFIRPTLSEDGSLHV 572 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 K GRHP+VEK + QS ++ANDCDL D+N ++ L+TGPNM GKST++RQ AL Sbjct: 573 KQGRHPVVEKVMGAQS---YVANDCDL----DENR-EILLITGPNMSGKSTYMRQVALTA 624 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 I AQ+G +VPA A + I D++F+R+G+AD+L +G+STFMVEM+E + + AT S ++ Sbjct: 625 ICAQVGCFVPAEEATLPIFDQIFTRIGAADDLIAGQSTFMVEMLEARNAIVHATKDSLIL 684 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 DEIGRGTAT DG+++A A IEY+HE + L +TH+HELTDL K L+ N + + Sbjct: 685 FDEIGRGTATYDGMALAQAIIEYIHENVHAKTLFSTHYHELTDLEKELRGLQNIHVSAVE 744 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE----KLYHHNQKDM 850 N ++FLHK+ G AD SYGI V +LA LP ++I RA IL+ E K+ N+K Sbjct: 745 ENGKVVFLHKIKEGPADKSYGIHVAELAELPKSLIERASRILEQLENENKKIIITNEKQP 804 Query: 851 RLYYPEIQ-----TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + E+Q + K SK KL +++I +N+ +M+P+ A+ LY +++ Sbjct: 805 EEIHEEVQLSMFPVEPEKKTSSKETKL-IKEIASMNIMQMTPMDAMNKLYELQS 857 >gi|89897992|ref|YP_515102.1| DNA mismatch repair protein MutS [Chlamydophila felis Fe/C-56] gi|123483789|sp|Q255T1|MUTS_CHLFF RecName: Full=DNA mismatch repair protein mutS gi|89331364|dbj|BAE80957.1| DNAmismatch repair ATPases [Chlamydophila felis Fe/C-56] Length = 826 Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust. Identities = 300/829 (36%), Positives = 472/829 (56%), Gaps = 36/829 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TPMM+Q+ + K +SL+ +RMGDFYE F++DA+L S+ L +TLT+R + IP Sbjct: 4 KKLTPMMKQWHQCKEQAGESLLLFRMGDFYEAFYEDAVLLSQHLDLTLTQR-----QGIP 58 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M G+PV T N YI +L+ G ++A+ EQ++ + K G + R + R +TPGTL Sbjct: 59 MSGIPVSTINGYIDRLVSKGFKVAVAEQLDEVQDGK--GKSEPLSRELQRFITPGTLLSS 116 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSE 201 LL NY++++ R+ + + +D STG F + N LI +I R+ P EI+ + Sbjct: 117 SLLPEKAHNYIVSINRVGALFGFSCLDFSTGSFLLQEYDNKKDLIDEICRLAPTEILSCD 176 Query: 202 KELS-HAEY-KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK-T 258 K H++ + L + L + F+H + +++ ++ ++++D FG V Sbjct: 177 KFYKKHSDVIEQLLQHLKLTLSTYSDWAFEHQFATQKLSAHFKVSSLDGFGLKGLVPAIN 236 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR-EQSLLKT 317 AA A +SY++ ++ I P+ Q L +D+A++ NLE+L L + + SLL Sbjct: 237 AAGALLSYLQDKLLLPIEHISIPKTHGNQKYLLVDTASQVNLELLAPLHDPQGKSSLLHV 296 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 ++ + T GGRL + SP D +I R D++ F + L ++ L D+ R Sbjct: 297 MERTCTPMGGRLLRNTLVSPFYDQKEILLRQDAVEFLLNRSELRKNLRSFLSQVRDLERL 356 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----QSLEK 433 +R+ PKD+ ++RD + + I + + LPE +G K +P SL Sbjct: 357 TTRVTTSLASPKDVGMLRDSLHASIRVFEVLSPLPLPEFFQG-----KFIPTIGLASLLD 411 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 LS L +LP +G D L R R+ SK + Q ++T +K LK+ Sbjct: 412 LLSKALLGELPLRISEGNIFSDDYHPDLKRLRYTRENSKEWLWDYQETIRKQTGVKKLKV 471 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 ++ LGY+IEV+S A +L K+ FI RQ+ + RFTT +L + ++ + + ++ Sbjct: 472 CYSQALGYYIEVSSDLAPLLPKE------FIRRQSRLHAERFTTEKLQEFQDDMLHVSDK 525 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 ++E E F+ L + I+EQ E++ + SQVIA +D ++LA LA E NYCRP++D+S + Sbjct: 526 LQMLETELFKDLCSRILEQREAILSLSQVIADVDYILSLADLAAEHNYCRPVVDSSDSLA 585 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + G HP+ + L + + FI ND + ++ L+TGPNM GKST++RQ AL+ Sbjct: 586 ILGGIHPVAQTLLDRGT---FIPNDIKMH----STRTRMILITGPNMAGKSTYIRQIALL 638 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 VIMAQMGS++PA AHIG++DK+F+R+G+ DNL+ G STFMVEM ETA+IL+ AT++S V Sbjct: 639 VIMAQMGSFIPAKSAHIGMIDKIFTRIGAGDNLSKGMSTFMVEMAETANILHNATDRSLV 698 Query: 734 ILDEIGRGTATLDGLSIAWATIEYL--HETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 ILDE+GRGT+T DGL+IA + +EYL E + + L ATH+ ELTDL K N Sbjct: 699 ILDEVGRGTSTYDGLAIAQSVVEYLLFTEGKKAKTLFATHYKELTDLEKHCPHVENFHAG 758 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 V ++ +FL++++ G + S+GI V KLAG P V+SRA IL+ E Sbjct: 759 VKENGGQPVFLYEILKGHSQRSFGIHVAKLAGFPLCVVSRAQQILRQLE 807 >gi|332160356|ref|YP_004296933.1| DNA mismatch repair protein MutS [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604410|emb|CBY25908.1| DNA mismatch repair protein MutS [Yersinia enterocolitica subsp. palearctica Y11] gi|325664586|gb|ADZ41230.1| DNA mismatch repair protein MutS [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 851 Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust. Identities = 311/884 (35%), Positives = 490/884 (55%), Gaps = 45/884 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 + L S TPMM+QY+ +K+ +P+ L+FYRMGDFYELF+ DA AS+ L I+LTKRG G+ Sbjct: 5 DKLDSHTPMMQQYLRLKAQHPEILLFYRMGDFYELFYSDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H+ +Y+ KL+++G AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGVPYHSIENYLAKLVQLGESAAICEQIGDPATSK-----GPVERKVVRIVTPGTV 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F+++ ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDTRGFGYATLDISSGRFRVAEPADLETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + E + E SL E + +P F+ ++ ++ + + FG Q + Sbjct: 180 YPE----NFEQMSLIEHRHGLR-RRPLWEFELETAKQQLNLQFGTRDLIGFG-VEQAHQA 233 Query: 259 --AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 AA + Y+K TQ + P I E Q + +D+A R NLE+ + LSG E +L Sbjct: 234 LRAAGCLLQYVKDTQRTSLPHIRGLTMERQQDGIVMDAATRRNLELTQNLSGGTENTLAA 293 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D ++T G R+ + P+ D+ + R +I + + +Q L+ D+ R Sbjct: 294 ILDCTVTAMGSRMLKRWLHMPIRDTKVLTDRQQAIGGLQE---ITAELQTPLRQVGDLER 350 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKT 434 L+RL + P+D+A +R + I L ++P + L V + +L LE+ Sbjct: 351 ILARLALRTARPRDLARMRHAFQQLPEIHRLLQPVNVPHIQNLLSQVGQFDELQDLLERA 410 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + + P RDGG + G +A LDE R+L D + + L+++ E+ + LK+ Sbjct: 411 IV----ETPPVLVRDGGVIAPGYNAELDEWRALADGATDYLDRLEIREREKLGLDTLKVG 466 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N GY+I+V+ + ++ ++ RQT+ N R+ EL + E+++ + A Sbjct: 467 FNGVHGYYIQVSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSKGKA 520 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L IE +E + + ++ L ++ +A +D+ LA A+ +Y P++ + + Sbjct: 521 LAIEKGLYEEIFDLLLPHLPELQTSANALAELDVLANLAERAETLSYNCPVLSDKPGIKI 580 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 GRHP+VE+ L S+PFI+N LS ++ ++TGPNMGGKST++RQ ALIV Sbjct: 581 TGGRHPVVEQVL----SEPFISNPLTLSPQR-----RMLIITGPNMGGKSTYMRQTALIV 631 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++A MGSYVPA A IG VD++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT QS V+ Sbjct: 632 LLAHMGSYVPADQATIGPVDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEQSLVL 691 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 692 MDEIGRGTSTYDGLSLAWACAENLASRIKAMTLFATHYFELTTLPEKMEGVVNVHLDALE 751 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 E I F+H V G A SYG+ V LAG+P VI RA LK E L +N ++ Sbjct: 752 HGETIAFMHSVQDGAASKSYGLAVAALAGVPRDVIKRARQKLKELESL-SNNAAASKIDG 810 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ L++ VE ++ L+ D +SP AL+ +Y +K Sbjct: 811 SQLTL------LNEEVSPAVEALESLDPDSLSPRQALEWIYRLK 848 >gi|254191438|ref|ZP_04897942.1| DNA mismatch repair protein MutS [Burkholderia pseudomallei Pasteur 52237] gi|157939110|gb|EDO94780.1| DNA mismatch repair protein MutS [Burkholderia pseudomallei Pasteur 52237] Length = 938 Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust. Identities = 307/882 (34%), Positives = 459/882 (52%), Gaps = 39/882 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ IKS +PD+LVFYRMGDFYELFF+DA A+R L +TLT+RG G I M G Sbjct: 69 TPMMQQYLRIKSEHPDTLVFYRMGDFYELFFEDAEKAARLLDLTLTQRGASAGTPIKMAG 128 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H Y+ KL+K G AICEQI P +K V R VVR+VTPGTLT+ LL Sbjct: 129 VPHHAVEQYLAKLVKFGESAAICEQIGDPAT-----SKGPVERKVVRVVTPGTLTDAALL 183 Query: 146 SPTDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 S +L+A+ + + +AW+++++G +++ D+L + + RI P EI+ Sbjct: 184 SDKSDVFLLALCVGHNKRGVASNIGLAWLNLASGALRLAELAPDQLGAALERIRPAEILA 243 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 ++ + +S+ +G + P FD + R+ D + ++D FG+ + Sbjct: 244 ADGTI-----ESVPAGMGAITRV-PAWHFDIASGTQRLCDQLEVASLDGFGAQALTSANG 297 Query: 260 AAAAIS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA A+ Y TQ + + E+ + +D + R NLE+ TL G+ +L + Sbjct: 298 AAGALLIYAAATQGQQLRHVRSLKVENESEYIGLDPSTRRNLELTETLRGTESPTLYSLL 357 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP--ILINPIQKILKSSPDVPR 376 D T G RL + P S R +I + P ++ ++ L+ DV R Sbjct: 358 DTCCTAMGSRLLRHWLHHPPRASVAAQARHQAIGALLDAPPNAGLDSLRSALRQIADVER 417 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 RL + P+D++ +RD + + + G +E + P L+ Sbjct: 418 ITGRLALLSARPRDLSSLRDTFAALPALRERVAEIASNAAALGRLEAALEPPPGCLDLLT 477 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 ++ + RDGG + G DA LDE R + + + + L+ + T I NL++++N Sbjct: 478 RAIAAEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLETRERARTGISNLRVEYN 537 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 G++IEVT + D + RQT+ N R+ T EL E++ +A AL Sbjct: 538 KVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTFEDKALSAQERALA 591 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 E ++ + A++ E + +A +D+ A A A+ ++ P + + Sbjct: 592 RERALYDGVLQALLPHIEGCQRVASGLAELDLLAAFAERARTLDWVAPEFTDEIGIEIDQ 651 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE ++Q FIANDC L+ KL L+TGPNMGGKSTF+RQ ALI +M Sbjct: 652 GRHPVVEAQVEQ-----FIANDCALN-----PERKLLLITGPNMGGKSTFMRQTALIALM 701 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+ILN AT S V++D Sbjct: 702 AYVGSYVPAKAARFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILNGATPHSLVLMD 761 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DGL++AWA +L NRC L ATH+ ELT L + N L + Sbjct: 762 EIGRGTSTFDGLALAWAIARHLLSHNRCYTLFATHYFELTQLPVEFPQAANVHLSAVEHG 821 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN---QKDMRLY 853 GI+FLH V G A+ SYG+QV +LAG+P VI A L E+ Q D+ Sbjct: 822 HGIVFLHAVEEGPANQSYGLQVAQLAGVPAPVIRAARKHLAHLEQQSAAQATPQLDLFAA 881 Query: 854 YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 P + E + +E++ L+ D++ P AL LY Sbjct: 882 PPVVDEPECNEPPAATPHPALERLLELDPDDLKPRDALDLLY 923 >gi|53805175|ref|YP_113095.1| DNA mismatch repair protein MutS [Methylococcus capsulatus str. Bath] gi|81682806|sp|Q60BA1|MUTS_METCA RecName: Full=DNA mismatch repair protein mutS gi|53758936|gb|AAU93227.1| DNA mismatch repair protein MutS [Methylococcus capsulatus str. Bath] Length = 854 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 316/891 (35%), Positives = 483/891 (54%), Gaps = 58/891 (6%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L TPMM+QY+ IK+ +PD L+FYRMGDFYELFF+DA A+R L +TLT RG+ G+ Sbjct: 6 DLSRHTPMMQQYLRIKAEHPDRLLFYRMGDFYELFFEDARRAARLLDLTLTSRGESGGER 65 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 + M G+P H + Y+ +LI++G +AICEQ+ P +K V R VVR+VTPGT+T Sbjct: 66 VAMAGIPYHAVDGYLARLIRLGESVAICEQVGDPAT-----SKGPVERKVVRIVTPGTVT 120 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIF 199 ++ LL N L AVAR + +A +D+S G F + +L++++ R++P EI+ Sbjct: 121 DEALLEERRDNLLAAVARDGAVFGLAVLDLSGGRFTLQQPGSVAQLLNELERLNPAEILV 180 Query: 200 SEKELSHAEYKSLFETL-GNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFGS-FSQVE 256 SE E L E L G + + P FD ++ + + FG + Sbjct: 181 SEDE-------PLTEELSGRRGLTRRPPWHFDPESGRRQLLSQFGTQDLAGFGCEHLGLA 233 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 AA + Y++ TQ P I E + +D+A+R NLE+ SG E +LL Sbjct: 234 IGAAGCLLQYLRDTQRSALPHIRSIRAETGTEYIGLDAASRRNLELDWHPSGRAEFTLLG 293 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D + + GGRL + PL D T + R +I + + + +L+ DV R Sbjct: 294 LLDRTGSAMGGRLLRRWLHQPLRDRTTLMLRQQAIGELLAD-RRFEALHDLLRGVGDVER 352 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFL---KNDLPEELRGAVEKLKKLPQSLEK 433 +R+ + P+D++ +R +++ + L L ++ L EL G +L P+ L + Sbjct: 353 IAARIALKSARPRDLSTLRQTLKA-LPALRETLHGTESALLGELTG---RLVDQPE-LSE 407 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + DD P RDGG + +G A LDE R L + + R +A L+ K E T + LK+ Sbjct: 408 LLQRAIVDDPPQLIRDGGVIAEGYHAELDELRLLSENADRFLAELEEKEREHTGLGALKV 467 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N G++IE+ S A + +I RQT+ N R+ T EL E+++ +A Sbjct: 468 GYNRVQGFYIELPRSQAD------RAPVHYIRRQTLKNAERYVTPELKAFEDKVLSARER 521 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL E +E L + +L + + +A +D+ LA A N+ P + ++ Sbjct: 522 ALSCEKALYEALLEILGRWLPALQDCAAGLAELDVLANLAERADRLNWVAPRLVDAPGIR 581 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + GRHP+VE Q PF+ ND PN + + ++TGPNMGGKST++RQ A+I Sbjct: 582 IIGGRHPVVE----QVGGTPFVPNDLAFG-PNRR----MLVITGPNMGGKSTYMRQAAII 632 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 V+MA +GS+VPA+ A IG +D++++R+G++D+LA GRSTFMVEM ETA+ILN AT +S V Sbjct: 633 VLMAHIGSHVPAAEAEIGPIDRIYTRIGASDDLAGGRSTFMVEMTETANILNNATAESLV 692 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA+ E+L R L ATH+ ELT L++ + N L Sbjct: 693 LMDEIGRGTSTFDGLSLAWASAEHLARETRAYTLFATHYFELTALAEECEDVGNVHLDAV 752 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYH--HNQ---- 847 + + ++FLH V G A SYG+QV LAG+P TVI A L+ E+ H Q Sbjct: 753 EHGDKVVFLHAVREGPASQSYGLQVAALAGVPQTVIDNARRKLEQLERQARSAHQQAAPV 812 Query: 848 KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L+ P V +++ L++D +SP AL L+ +K Sbjct: 813 AQLDLFLP------------PEPHPVVRRLESLDVDGLSPREALNLLFELK 851 >gi|33152989|ref|NP_874342.1| DNA mismatch repair protein [Haemophilus ducreyi 35000HP] gi|44888180|sp|Q7VKA1|MUTS_HAEDU RecName: Full=DNA mismatch repair protein mutS gi|33149214|gb|AAP96731.1| DNA mismatch repair protein MutS [Haemophilus ducreyi 35000HP] Length = 866 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 309/892 (34%), Positives = 490/892 (54%), Gaps = 43/892 (4%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 + +++ TPMM+QY+++K+ +PD L+FYRMGDFYELF++DA A+ L I+LTKRG Sbjct: 1 MNKDVSQHTPMMQQYLQLKAQHPDILLFYRMGDFYELFYEDAKKAAVLLDISLTKRGASA 60 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G+ IPM GVP H Y+ KL+ +G +AICEQI + +K V R VVR+VTPG Sbjct: 61 GEPIPMAGVPYHAVEGYLAKLVALGESVAICEQI-----GEVGASKGPVERKVVRIVTPG 115 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPRE 196 T++++ LL N + A+ + +AIA +D+++G F IS +N L++++ R+ P E Sbjct: 116 TVSDEALLPERQDNLVAAICEQKGVFAIATLDMTSGRFLISELANKTALMAELQRVMPAE 175 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 I++ E + ++ + ++ L +P F+ + + + +D FG ++V Sbjct: 176 ILYPE-DFAYIPMLNNYKGLRR----RPCWEFELVTAIQLLNRQFGTQCLDGFGVQQAKV 230 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA + Y ++TQ P I + +D+A R NLE+ + L+G E +L Sbjct: 231 ALCAAGCVLHYAQETQRTALPHINSIHLSQDSEMVLLDAATRRNLELTQNLAGGTEATLA 290 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D +T G RL I P+ + +R D I +Q I P+Q +L++ D+ Sbjct: 291 SVLDKCVTPMGSRLLKRWIHQPIRQLDILKSRQDMIAT-LQQYEQIEPLQPLLRNVGDME 349 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLK--NDLPEELRGAVEKLKKLPQSLEK 433 R L+R+ + P+D+ +R+ + L L K +L L + K + L Sbjct: 350 RILARIALRSARPRDLT----RLRTALAQLPLIAKCTQNLGACLAVLLSKNADFSE-LYT 404 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + + P RDGG + +G A LDE R+L + + + +L+++ E T I LKI Sbjct: 405 LLEQAIIETPPQLIRDGGVIAEGYHAELDEWRTLSAGATQYLDNLEIRERESTGIDTLKI 464 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GY+I+++ + A ++ ++ RQT+ N R+ EL E+++ A + Sbjct: 465 GFNAVQGYYIQISQAQAH------KAPIHYVRRQTLKNAERYIIPELKTYEDKVLKAKGA 518 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E + +E L + I+ +L + ++ +D+ + LA A+ +Y RP Sbjct: 519 ALALEKQLYEQLFDLIMPHLGALQQTAMALSELDVLVNLAERAESLHYVRPSFSLQRGIN 578 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +K GRHP+VE + + PFIAN L+ + L ++TGPNMGGKST++RQ ALI Sbjct: 579 IKAGRHPVVEHVMVE----PFIANTVFLN-----SQRHLLIVTGPNMGGKSTYMRQTALI 629 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +GS+VPA A IG++D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT QS V Sbjct: 630 CLMAYIGSFVPAESAEIGVIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATAQSVV 689 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGL++A A E+L + L ATH+ ELT L LK N L Sbjct: 690 LIDEIGRGTSTYDGLALACACAEWLANKTQSLTLFATHYFELTSLPSQLKGVANVHLDAC 749 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL-------YHHN 846 + N+ I F+H V G A SYG+ V LAG+P VI+ A L E+ H Sbjct: 750 EYNDTIAFMHSVQEGAASKSYGLAVAALAGVPKQVIALAKQRLVHLEEFSQQTKMAQQHP 809 Query: 847 QKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 Q D+ L+ E+ +E L+K + ++ + DE++P AL LY +K Sbjct: 810 QADL-LFTVEMPEEEKMAPLAKAESAVELALRAITPDELTPRQALDELYRLK 860 >gi|92087043|sp|Q3JQS6|MUTS_BURP1 RecName: Full=DNA mismatch repair protein mutS Length = 890 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 307/882 (34%), Positives = 459/882 (52%), Gaps = 39/882 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ IKS +PD+LVFYRMGDFYELFF+DA A+R L +TLT+RG G I M G Sbjct: 21 TPMMQQYLRIKSEHPDTLVFYRMGDFYELFFEDAEKAARLLDLTLTQRGASAGTPIKMAG 80 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H Y+ KL+K G AICEQI P +K V R VVR+VTPGTLT+ LL Sbjct: 81 VPHHAVEQYLAKLVKFGESAAICEQIGDPAT-----SKGPVERKVVRVVTPGTLTDAALL 135 Query: 146 SPTDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 S +L+A+ + + +AW+++++G +++ D+L + + RI P EI+ Sbjct: 136 SDKSDVFLLALCVGHNKRGVASNIGLAWLNLASGALRLAELAPDQLGAALERIRPAEILA 195 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 ++ + +S+ +G + P FD + R+ D + ++D FG+ + Sbjct: 196 ADGTI-----ESVPAGMGAITRV-PAWHFDIASGTQRLCDQLEVASLDGFGAQALTSANG 249 Query: 260 AAAAIS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA A+ Y TQ + + E+ + +D + R NLE+ TL G+ +L + Sbjct: 250 AAGALLIYAAATQGQQLRHVRSLKVENESEYIGLDPSTRRNLELTETLRGTESPTLYSLL 309 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP--ILINPIQKILKSSPDVPR 376 D T G RL + P S R +I + P ++ ++ L+ DV R Sbjct: 310 DTCCTAMGSRLLRHWLHHPPRASVAAQARHQAIGALLDAPPNAGLDSLRSALRQIADVER 369 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 RL + P+D++ +RD + + + G +E + P L+ Sbjct: 370 ITGRLALLSARPRDLSSLRDTFAALPALRERVAEIASNAAALGRLEAALEPPPGCLDLLT 429 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 ++ + RDGG + G DA LDE R + + + + L+ + T I NL++++N Sbjct: 430 RAIAAEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLETRERARTGISNLRVEYN 489 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 G++IEVT + D + RQT+ N R+ T EL E++ +A AL Sbjct: 490 KVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTFEDKALSAQERALA 543 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 E ++ + A++ E + +A +D+ A A A+ ++ P + + Sbjct: 544 RERALYDGVLQALLPHIEGCQRVASGLAELDLLAAFAERARTLDWVAPEFTDEIGIEIDQ 603 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE ++Q FIANDC L+ KL L+TGPNMGGKSTF+RQ ALI +M Sbjct: 604 GRHPVVEAQVEQ-----FIANDCALN-----PERKLLLITGPNMGGKSTFMRQTALIALM 653 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+ILN AT S V++D Sbjct: 654 AYVGSYVPAKAARFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILNDATPHSLVLMD 713 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DGL++AWA +L NRC L ATH+ ELT L + N L + Sbjct: 714 EIGRGTSTFDGLALAWAIARHLLSHNRCYTLFATHYFELTQLPVEFPQAANVHLSAVEHG 773 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN---QKDMRLY 853 GI+FLH V G A+ SYG+QV +LAG+P VI A L E+ Q D+ Sbjct: 774 HGIVFLHAVEEGPANQSYGLQVAQLAGVPAPVIRAARKHLAHLEQQSAAQATPQLDLFAA 833 Query: 854 YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 P + E + +E++ L+ D++ P AL LY Sbjct: 834 PPVVDEPECNEPPAATPHPALERLLELDPDDLKPRDALDLLY 875 >gi|114777452|ref|ZP_01452449.1| DNA mismatch repair protein [Mariprofundus ferrooxydans PV-1] gi|114552234|gb|EAU54736.1| DNA mismatch repair protein [Mariprofundus ferrooxydans PV-1] Length = 850 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 314/874 (35%), Positives = 487/874 (55%), Gaps = 39/874 (4%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY++IKS D L+FYRMGDFYE+FFDDA AS+ L ITLTKRGK G DIPM GVP Sbjct: 1 MMQQYLKIKSEYADCLLFYRMGDFYEMFFDDAAEASKILDITLTKRGKAGGDDIPMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A Y+ +L+ G R+A+CEQ+E P G+K VRR VVR+VT GT+TE +LL Sbjct: 61 WHQAEGYLARLVAAGKRVAVCEQMEPP-----DGSKGPVRREVVRVVTSGTITESELLDQ 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRI-DPREIIFSEKELSH 206 + S L A +W IA +D+S G +++ + D + + + P E++ + Sbjct: 116 SRSAPLAACFHQGEQWGIAAVDLSCGHWRLLEGHGDTAFEEQLSVLAPAELLLQSGD--- 172 Query: 207 AEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQ-VEKTAAAAAI 264 +FE + VA+P + F +++ ++ ++ I+ + + + AA AA+ Sbjct: 173 ---DMVFE----MPVARPGDWSFSVAVTREQLEQHFGISDWQSLNLDAHPLAAAAAGAAL 225 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 Y+ +TQ + P + + ID +R NLE+ +L+G + ++ +D S T Sbjct: 226 VYLGQTQKCALAHLQLPVFIEQGEGMRIDMRSRRNLELYCSLAGDPKGGMIAVLDDSCTP 285 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 G RL + I +PLTD ++ R D++ I + +++ + L+ D+ R L+R+ + Sbjct: 286 MGARLLRQWIDNPLTDLERLRQRQDAVQSLIDDNEMMHAARTQLRDVRDMERMLTRIVLA 345 Query: 385 RGEPKDIAVIRDGIRSGINILNLFL-KNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 R P+D I + + + + NL + L ++ A++ L+ + +++ + M Sbjct: 346 RANPRDFRGIAEALLALPVLYNLLGDRGGLFSDMISALQGLETIAGEMDRAIIEMP---- 401 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P RDGG +R+G DA LD R L + + + + E T + NL++K+N GYFI Sbjct: 402 PALFRDGGVIREGFDAELDRLRGLARDAGDWLRDYEARERERTGLTNLRVKYNKVFGYFI 461 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 E++ + A E+ ++ +QT+ N RF T EL E+ I A ++A+ E E E Sbjct: 462 EISRAQAR------EAPADYVRKQTLVNAERFITDELHQFESEILGARDAAMQREDELIE 515 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 + + + S+ A++ +A +D+ A LA Y RP + N + GRHP+VE Sbjct: 516 SVRQLLCSHAASIQQAARAVAELDVLACFAHLAIRHRYVRPQVHAGRNMKIVAGRHPVVE 575 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 + L Q +PF+AND + D S + LLTGPNMGGKST++RQ A IV +A G +V Sbjct: 576 RHL--QGDEPFVANDTHM----DMKSRRFMLLTGPNMGGKSTYMRQVAWIVWLAHTGCFV 629 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 A A I + +LF+RVG+ D LASGRSTFMVEM+ETA+ILNQ +S VI+DEIGRGT+ Sbjct: 630 AADEARIPLTRRLFTRVGAGDELASGRSTFMVEMMETATILNQMGPRSLVIVDEIGRGTS 689 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DGL+IAWA E L + L ATH+HELT+L + NA++ V + N +IF+H Sbjct: 690 TWDGLAIAWAVAERLIGASDILTLFATHYHELTELPDTWAEAFNASVTVREWNGSVIFMH 749 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE---KLYHHNQKDMRLYYPEIQTK 860 +V+ AD SYGI V +LAGLP V+ RA + L E +L + K+ + + + Sbjct: 750 QVVEDAADQSYGIAVAQLAGLPREVVKRAREHLFRLEHGSELVAESGKNQLGLFAVAEKR 809 Query: 861 ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 + + L + + EK++ +++ M PL AL L Sbjct: 810 QQQAELD-SLRALREKVRQTDVNSMRPLDALTFL 842 >gi|71907966|ref|YP_285553.1| DNA mismatch repair protein [Dechloromonas aromatica RCB] gi|90109845|sp|Q47DJ8|MUTS_DECAR RecName: Full=DNA mismatch repair protein mutS gi|71847587|gb|AAZ47083.1| DNA mismatch repair protein MutS [Dechloromonas aromatica RCB] Length = 860 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 309/894 (34%), Positives = 482/894 (53%), Gaps = 51/894 (5%) Query: 17 DLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKH 76 D +L TPMMRQY+ +K+ +P++L+FYRMGDFYELF +DA A+R L ITLT RG+ Sbjct: 4 DKAPDLSKHTPMMRQYLALKANHPNTLLFYRMGDFYELFHEDAEKAARLLDITLTTRGQS 63 Query: 77 LGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTP 136 G I MCG+P H+ Y+ +L+K+G ICEQI P +K V R V R+VTP Sbjct: 64 AGVPIKMCGIPFHSLEPYLARLVKLGESAVICEQIGDPAT-----SKGPVERAVARIVTP 118 Query: 137 GTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPRE 196 GTLT+ L+ +L+AV R IA +++++G F + +++ + + RI P E Sbjct: 119 GTLTDAALIDDKQDLWLLAVTTHRNTAGIARLNLASGEFILIEVPTEQIPATLERIRPAE 178 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVA---QPNVFFDHSISESRIADYYNITTVDTFGSFS 253 I++ E S G V VA QP+ +F+ + + D + + ++ FG+ Sbjct: 179 ILYPE---------SWTPNFG-VDVARTRQPDWYFEFDSARRLLCDQFEVASLAGFGAEG 228 Query: 254 QVEKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 AAA A+ Y + TQ P + E + L +D A R NLE+ TL G Sbjct: 229 LKPAIAAAGALLQYAQATQSGKLPHLRGLTVEIEGAYLGLDLATRRNLELTETLRGQPSP 288 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQN-PILINPIQKILKSS 371 +L +D +T G RL + PL R ++ +++ L N ++K L+ Sbjct: 289 TLFSLLDNCVTSMGSRLLRHTLHHPLRARDIPAARHGAVEALLEDYGRLGNEVRKALRGI 348 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRD------GIRSGINILNLFLKNDLPEELRGAVEKLK 425 D+ R R+ + P+D+A +R+ G+R+ ++ L L EL L+ Sbjct: 349 ADIERIAGRVALRNARPRDLASLRESVARLEGLRAPLSDSPAPLIAQLFTELETPYPALE 408 Query: 426 KLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE 485 L +++ + + RDGG + G D LDE RSL D + ++ + E Sbjct: 409 LLVRAIAAEPGAQV--------RDGGVIAPGYDPDLDELRSLNDNCGAFLVDMEARERER 460 Query: 486 TKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 + I +LK+++N G++IEVT ++ + D + RQT+ N R+ T EL E+ Sbjct: 461 SGIASLKVEYNKVHGFYIEVTHANVDKIPDD------YRRRQTLKNAERYITPELKAFED 514 Query: 546 RITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPI 605 + +A +L E +E + +A++ +L ++ IA +D+ A A ++N+C+P Sbjct: 515 KALSAQERSLAREKLLYEAILDALLPVVPTLQTIARAIAQLDLLAGFAESALKRNWCKPE 574 Query: 606 IDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKST 665 T + GRHP+VE L Q+ FIANDC L+ + +L L+TGPNMGGKST Sbjct: 575 FAAETQLSITGGRHPVVEGELTNQAET-FIANDCLLA-----ENRRLLLITGPNMGGKST 628 Query: 666 FLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILN 725 ++RQ ALI ++A +G YVPA +G +D++F+R+G++D+LASGRSTFMVEM E A+IL+ Sbjct: 629 YMRQVALIALLAHIGCYVPADRCVLGPLDRIFTRIGASDDLASGRSTFMVEMTEAAAILH 688 Query: 726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRF 785 ATNQS V++DEIGRGT+T DG+++A+A + +L E N+ L ATH+ ELT LS Sbjct: 689 HATNQSLVLMDEIGRGTSTFDGMALAFAILRHLIEKNQSLTLFATHYFELTRLSHEYSEL 748 Query: 786 HNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH 845 N L + N+ I+F+H V G A+ SYGIQV LAG+P V+ A L+ FE+ Sbjct: 749 ANVHLGAVEHNDRIVFMHAVEEGPANQSYGIQVAALAGIPTAVVRAARKQLREFEQ---- 804 Query: 846 NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + + P++ + + VE++ ++ D ++P AL LYA+K Sbjct: 805 -RAAVDPLQPDLFAQGAPEPAEPEPHPVVEQLAAIDPDSLTPREALDALYALKG 857 >gi|167032192|ref|YP_001667423.1| DNA mismatch repair protein MutS [Pseudomonas putida GB-1] gi|166858680|gb|ABY97087.1| DNA mismatch repair protein MutS [Pseudomonas putida GB-1] Length = 880 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 311/892 (34%), Positives = 486/892 (54%), Gaps = 54/892 (6%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 + + TPMM+QY ++K+ +PD L+FYRMGDFYE+F++DA A++ L ITLT RG+ G+ Sbjct: 26 DFTAHTPMMQQYWKLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQS 85 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCG+P H+ Y+ KL+K+G + ICEQI P +K V R VVR++TPGT++ Sbjct: 86 IPMCGIPFHSLEGYLAKLVKLGESVVICEQIGDPAT-----SKGPVERQVVRIITPGTVS 140 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIF 199 ++ LL N + A+ + +A +DI++G F + + L++++ R++P E++ Sbjct: 141 DEALLDERRDNLIAALLGDERLFGLAVLDITSGNFSVQEIKGWENLLAELERLNPVELLI 200 Query: 200 SE---KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 + ++L + A + FD + + + + FG Sbjct: 201 PDDWPRDLPAEKRPG--------ARRRAPWDFDRDSARKALCQQFATKDLKGFGCDKLTL 252 Query: 257 KTAAAAA-ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA ++Y K+TQ P + E + T+ +D A+R NLE+ L+G R+ +L Sbjct: 253 AIGAAGCLLTYAKETQRTALPHLRSLRHERLDDTVILDGASRRNLELDINLAGGRDNTLQ 312 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 ID T RL + + PL D + R DSI + + +Q LK D+ Sbjct: 313 SVIDRCQTAMASRLLSRWLNRPLRDLKVLQARQDSIRCLLDS-YRFEKLQPQLKEIGDIE 371 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R L+R+ + P+D+A +RD + + + N + + P R A + L L Sbjct: 372 RILARIGLRNARPRDLARLRDALGALPELQNAMTELEAPHLARLAA--ITGTYPELASLL 429 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + D+ P RDGG L+ G D LD+ ++ + + + + L+ + T + NLK+ + Sbjct: 430 ERAIIDNPPAVIRDGGVLKAGYDNELDDLLAISENAGQFLIDLEAREKARTGLANLKVGY 489 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GYFIE+ + A D +I RQT+ RF T EL E++ +A + AL Sbjct: 490 NRVHGYFIELPTKQAEQAPGD------YIRRQTLKGAERFITPELKAFEDKALSAKSRAL 543 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY-CRPIIDNSTNFIV 614 E ++ L +I L +++ +A +D+ LA A + C +D IV Sbjct: 544 AREKMLYDALLETLISHLAPLQDSAAALAELDVLSNLAERALNLDLNCPRFVDEPCLRIV 603 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 + GRHP+VE+ L + PF+AND L NS ++ ++TGPNMGGKST++RQ ALIV Sbjct: 604 Q-GRHPVVEQVL----TTPFVANDLGLD-----NSTRMLIITGPNMGGKSTYMRQTALIV 653 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++A +GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V+ Sbjct: 654 LLAHIGSFVPAASCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDRSLVL 713 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DE+GRGT+T DGLS+AWA E L + R L ATH+ ELT L +S N L ++ Sbjct: 714 MDEVGRGTSTFDGLSLAWAAAERLAQL-RAYTLFATHYFELTVLPESEPLVANVHLNATE 772 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL-YHHNQKDMRLY 853 NE I+FLH V+PG A SYG+ V +LAG+P VI RA + L E H Q Sbjct: 773 HNERIVFLHHVLPGPASQSYGLAVAQLAGVPTVVIQRAREHLGRLETTSLPHEQP----- 827 Query: 854 YPEIQTKESKNNLSKNDKLF-------VEKIKCLNLDEMSPLTALKTLYAVK 898 P + K++ ++D LF +EK+ L LD+M+P A++ LY +K Sbjct: 828 -PAAKAKDAPQVPHQSD-LFASLPHPAIEKLGKLQLDDMTPRQAIEMLYQLK 877 >gi|168211840|ref|ZP_02637465.1| DNA mismatch repair protein MutS [Clostridium perfringens B str. ATCC 3626] gi|170710211|gb|EDT22393.1| DNA mismatch repair protein MutS [Clostridium perfringens B str. ATCC 3626] Length = 895 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 298/836 (35%), Positives = 480/836 (57%), Gaps = 36/836 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY EIK D ++F+R+GDFYE+FF+DA A+R L + LT R L K PMCG Sbjct: 4 TPMMRQYFEIKENYKDCILFFRLGDFYEMFFEDAETAARELELVLTGRDCGLEKRAPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H +N YI +L+ G+++AICEQ+E P AK +V+R+V++++TPGT T+ + Sbjct: 64 IPFHASNSYIGRLVAKGYKVAICEQVEDPKVAK-----GIVKRDVIKVITPGTYTDSSFV 118 Query: 146 SPTDSNYLMAVARI--RTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREIIFSE 201 T +NY+M + R ++A DISTG F + ++ ++ +I + +P+EII + Sbjct: 119 EETKNNYIMTIYSDLERNRCSLAITDISTGDFLATEGELEKGVILDEISKFNPKEIILLD 178 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 L K + T + +P +F E + + N + S S + K ++ Sbjct: 179 S-LDQELIKDITLTTPALISRKPIEYF-----EEKFEEVLNAQFGEKSNSLSLMIKKSSN 232 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 A + YI TQ ++ I E + + ID ++R NLE+ L S++ SLL +D Sbjct: 233 ALVKYILDTQKISLTNINDIEVYSLVDFMTIDLSSRRNLELTENLREKSKKGSLLWVLDK 292 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G R+ I PL + KI RL+++ + L + +++ L D+ R L + Sbjct: 293 TETSMGSRMLRRWIEEPLVNKEKITLRLNAVEELFNDLSLNDSLKEALHDIYDIERILGK 352 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 + KD+ ++ I N+ + + L + ++ L+ + + LEK++ Sbjct: 353 ISNKNANAKDLIALKTSIGKIPNVKGIIENCTSSLLKNYHHNLDDLRDIYELLEKSIK-- 410 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 +D +DG ++DG ++ +DE R + K I+SL+ + E T IK+LK+ N Sbjct: 411 --EDPSLTLKDGDLIKDGFNSEIDELRLAKTNGKDWISSLENREREFTGIKSLKVGFNKV 468 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IE++ ++ S + + R+I +QT++N RF T EL ++E ++ A+ +E Sbjct: 469 FGYYIEISKANYSSI-----PEGRYIRKQTLANAERFITPELKEIEEKLLGASEKLCSLE 523 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F + N + + L +++IA +D LA +A E ++ +P I+ +++GR Sbjct: 524 YDIFLDIRNEVENHIDRLKTTAKIIAELDCISNLAFVALENDFIKPEINEDGETKIENGR 583 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VEK + + FI ND + +K+ +L ++TGPNM GKST++RQ A+I +M Q Sbjct: 584 HPVVEKVIPKGE---FIPNDTII----NKDDNQLLIITGPNMAGKSTYMRQVAIITLMCQ 636 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPAS A+I IVDK+F+R+G++D+LA G+STFMVEM E ++IL AT S V+LDE+ Sbjct: 637 IGSFVPASKANISIVDKIFTRIGASDDLAGGKSTFMVEMWEVSNILKNATENSLVLLDEV 696 Query: 739 GRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 GRGT+T DGLSIAW+ IEY+ + RC+ L ATH+HELT L + N ++ V + + Sbjct: 697 GRGTSTYDGLSIAWSVIEYICKNKNLRCKTLFATHYHELTKLEGEIHGVRNYSVAVKEVD 756 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 IIFL K+I G AD SYGI+V KLAG+P+ VI+RA +IL+T E + D+ L Sbjct: 757 NNIIFLRKIIEGGADQSYGIEVAKLAGIPDEVINRAKEILETLEMESSKDNLDLAL 812 >gi|254297070|ref|ZP_04964523.1| DNA mismatch repair protein MutS [Burkholderia pseudomallei 406e] gi|157806909|gb|EDO84079.1| DNA mismatch repair protein MutS [Burkholderia pseudomallei 406e] Length = 1001 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 307/882 (34%), Positives = 459/882 (52%), Gaps = 39/882 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ IKS +PD+LVFYRMGDFYELFF+DA A+R L +TLT+RG G I M G Sbjct: 132 TPMMQQYLRIKSEHPDTLVFYRMGDFYELFFEDAEKAARLLDLTLTQRGASAGTPIKMAG 191 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H Y+ KL+K G AICEQI P +K V R VVR+VTPGTLT+ LL Sbjct: 192 VPHHAVEQYLAKLVKFGESAAICEQIGDPAT-----SKGPVERKVVRVVTPGTLTDAALL 246 Query: 146 SPTDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 S +L+A+ + + +AW+++++G +++ D+L + + RI P EI+ Sbjct: 247 SDKSDVFLLALCVGHNKRGVASNIGLAWLNLASGALRLAELAPDQLGAALERIRPAEILA 306 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 ++ + +S+ +G + P FD + R+ D + ++D FG+ + Sbjct: 307 ADGTI-----ESVPAGMGAITRV-PAWHFDIASGTQRLCDQLEVASLDGFGAQALTSANG 360 Query: 260 AAAAIS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA A+ Y TQ + + E+ + +D + R NLE+ TL G+ +L + Sbjct: 361 AAGALLIYAAATQGQQLRHVRSLKVENESEYIGLDPSTRRNLELTETLRGTESPTLYSLL 420 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP--ILINPIQKILKSSPDVPR 376 D T G RL + P S R +I + P ++ ++ L+ DV R Sbjct: 421 DTCCTAMGSRLLRHWLHHPPRASVAAQARHQAIGALLDAPPNAGLDSLRSALRQIADVER 480 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 RL + P+D++ +RD + + + G +E + P L+ Sbjct: 481 ITGRLALLSARPRDLSSLRDTFAALPALRERVAEIASNAAALGRLEAALEPPPGCLDLLT 540 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 ++ + RDGG + G DA LDE R + + + + L+ + T I NL++++N Sbjct: 541 RAIAAEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLETRERARTGISNLRVEYN 600 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 G++IEVT + D + RQT+ N R+ T EL E++ +A AL Sbjct: 601 KVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTFEDKALSAQERALA 654 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 E ++ + A++ E + +A +D+ A A A+ ++ P + + Sbjct: 655 RERALYDGVLQALLPHIEGCQRVASGLAELDLLAAFAERARTLDWVAPEFTDEIGIEIDQ 714 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE ++Q FIANDC L+ KL L+TGPNMGGKSTF+RQ ALI +M Sbjct: 715 GRHPVVEAQVEQ-----FIANDCALN-----PERKLLLITGPNMGGKSTFMRQTALIALM 764 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+ILN AT S V++D Sbjct: 765 AYVGSYVPAKAARFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILNDATPHSLVLMD 824 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DGL++AWA +L NRC L ATH+ ELT L + N L + Sbjct: 825 EIGRGTSTFDGLALAWAIARHLLSHNRCYTLFATHYFELTQLPVEFPQAANVHLSAVEHG 884 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN---QKDMRLY 853 GI+FLH V G A+ SYG+QV +LAG+P VI A L E+ Q D+ Sbjct: 885 HGIVFLHAVEEGPANQSYGLQVAQLAGVPAPVIRAARKHLAHLEQQSAAQATPQLDLFAA 944 Query: 854 YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 P + E + +E++ L+ D++ P AL LY Sbjct: 945 PPVVDEPECNEPPAATPHPALERLLELDPDDLKPRDALDLLY 986 >gi|94310020|ref|YP_583230.1| DNA mismatch repair protein MutS [Cupriavidus metallidurans CH34] gi|123260259|sp|Q1LPG5|MUTS_RALME RecName: Full=DNA mismatch repair protein mutS gi|93353872|gb|ABF07961.1| methyl-directed mismatch repair protein [Cupriavidus metallidurans CH34] Length = 916 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 319/907 (35%), Positives = 487/907 (53%), Gaps = 66/907 (7%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E + +PMM QY IK+ +PD+L+FYRMGDFYELF DDA A+R L ITLT RG+ G Sbjct: 41 EKAEKQSPMMLQYHRIKADHPDTLLFYRMGDFYELFHDDAEKAARLLDITLTARGQSGGV 100 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 I M G+P H+A+ Y+ +L+K+G +AICEQI P +K V R VVR+VTPGTL Sbjct: 101 PIRMAGIPFHSADQYLARLVKLGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTL 155 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAI-----AWIDISTGIFKISTSNHDRLISDIMRIDP 194 T+ LL +L+AV + T + AW+++++G ++ + +L ++ RI P Sbjct: 156 TDAALLPDKSDTFLLAVHQQTTRRGVSKTGLAWLNLASGELRLMECDAAQLSRELERIRP 215 Query: 195 REIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFS 253 E+++++ TL P FD R+ + + +++ FG S Sbjct: 216 AEVLYTDG--------MDLPTLTCARTRLPEWHFDQEAGTRRLREQIGVASLEPFGCSGL 267 Query: 254 QVEKTAAAAAISYIKKTQ-----MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG 308 AA A ++Y TQ V T+ ERE + +DSA R NLE+ TL G Sbjct: 268 GAALGAAGALLNYAATTQGQSLRHVQGVTV---ERE--SEFVGLDSATRRNLELTETLRG 322 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFI-QNPILINPIQKI 367 + +L +D T G R + PL D R +I I Q P + ++ + Sbjct: 323 TESPTLFSLLDTCATTMGSRALRHWLHHPLRDPALPRARQQAIGALITQGP---DGLRAV 379 Query: 368 LKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL 427 L+ DV R +RL + P+D++ +RD +R+ ++ + ++ L +E++ + Sbjct: 380 LRKLADVERITARLALLSARPRDLSSLRDTLRALPDVQAATVSSEDAPLLAQTLEEID-I 438 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 PQ + L ++D+ T RDGG + G D+ LDE R + + + + L+ + E T Sbjct: 439 PQDCLELLIRAVADEPSTVIRDGGVIARGYDSELDELRDISENCGQFLIDLETRERERTG 498 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 I NL++++N G++IEVT+ A + D + RQT+ N R+ T EL E++ Sbjct: 499 ITNLRVEYNRVHGFYIEVTNGQADKVPDD------YRRRQTLKNAERYITPELKAFEDKA 552 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 +A + AL E + ++ L A++ SL + +A +D+ LA AK ++ +P Sbjct: 553 LSAQDRALAREKQLYDGLLQALLPHIGSLRRVAGALARLDVLATLAERAKTLDWVQPERV 612 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 + GRHP+VE L +S FIANDC L+ + KL L+TGPNMGGKSTF+ Sbjct: 613 QENVIDISQGRHPVVEGQLAAESVA-FIANDCQLN-----EARKLLLITGPNMGGKSTFM 666 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ ALIV++A +G++VPA A IG VD++F+R+G+AD+LA GRSTFMVEM E A+IL+ A Sbjct: 667 RQTALIVLLACVGAWVPARRAVIGPVDRIFTRIGAADDLAGGRSTFMVEMTEAAAILHNA 726 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 T S V++DEIGRGT+T DGL++AWA +L NR L ATH+ ELT L + N Sbjct: 727 TPSSLVLMDEIGRGTSTFDGLALAWAIARHLLSHNRSHTLFATHYFELTQLPVEFPQAAN 786 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ 847 L + +GI+FLH V G A SYG+QV +LAG+P VI A L E+ Q Sbjct: 787 VHLSAVEHGDGIVFLHAVQDGPASQSYGLQVAQLAGVPQPVIRAARKHLAWLEE-----Q 841 Query: 848 KDMRLYYPEIQTKESKNNLSKNDK---------------LFVEKIKCLNLDEMSPLTALK 892 P++ ++++ S +D+ +E + ++ D +SP AL+ Sbjct: 842 SADATPTPQMDLFSAQSSPSADDEDDKSAGQSAVPPAQAATLEALADIDPDSLSPREALE 901 Query: 893 TLYAVKA 899 LY +K+ Sbjct: 902 ALYRLKS 908 >gi|254167808|ref|ZP_04874658.1| DNA mismatch repair protein MutS [Aciduliprofundum boonei T469] gi|289597150|ref|YP_003483846.1| DNA mismatch repair protein MutS [Aciduliprofundum boonei T469] gi|197623336|gb|EDY35901.1| DNA mismatch repair protein MutS [Aciduliprofundum boonei T469] gi|289534937|gb|ADD09284.1| DNA mismatch repair protein MutS [Aciduliprofundum boonei T469] Length = 828 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 318/879 (36%), Positives = 507/879 (57%), Gaps = 63/879 (7%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TP+MRQY IK+ D+++F+R+GDFYE F DDA L S+ L I LT+R K + +PM Sbjct: 2 ATPLMRQYHRIKAKYKDTILFFRVGDFYETFEDDAKLVSKELNIVLTRRSKD--EPVPMA 59 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G+P H + Y+ +L+K G+++AICEQ+E P AK RG LVRR+VVR+VTPGTL ED L Sbjct: 60 GIPYHALDAYLSRLVKKGYKVAICEQLEDP--AKARG---LVRRDVVRVVTPGTLIEDTL 114 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 L+ D+N+L ++ + + + A +DISTG F + L ++I+R+ P EI L Sbjct: 115 LTE-DNNFLFSIYKHKEIYGFAALDISTGEFFAGELDFYGLNAEILRLQPSEI------L 167 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S+++ F+ + + + D+ E + +++ + + FG + AAA+A+ Sbjct: 168 SNSKLNLDFQ----IKILAEEYYNDY---EKILKEHFKVAELSGFG-IGEYGLRAAASAL 219 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 Y K+ M + I + L +DS NLEI + G + +L T++ T Sbjct: 220 KYAKENTMNDLKNITSLQGYFKDKYLILDSTTLKNLEIFHNVLGEDKYTLYHTMNKCETP 279 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 G RL + PL D +IN RLD++ +L + I+ IL D+ R +R+ +G Sbjct: 280 MGARLLKRWMQRPLKDIDEINDRLDAVEELANKQLLQDSIRTILSRIKDIERIKTRVSLG 339 Query: 385 RGEPKDIAVIRDGIRSG----INILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 R P+D+ +++ ++ IN + LKN + K+ + +E + + ++ Sbjct: 340 RAAPRDLISLKESLKQADKLRINFESKILKN--------SASKIYGIEGIIE-LIENAIN 390 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D P + G +++G + LDE + + +K +I ++ + T IKNLKI +N+ +G Sbjct: 391 GDYPVGE---GVIKEGYNEELDEIKRIASNAKLLIGKMEERERRNTGIKNLKIGYNDVMG 447 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IEV+ S+ S + K + +QT+ N RF T EL +LE +I +A + IE + Sbjct: 448 YYIEVSKSNLSKVPK------HYRRKQTLKNSERFVTDELKELEYKILSAKDRIYEIENK 501 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 + + + E + ++ ++ IAIID+ +LA +A E NY RP +D S + +++GRHP Sbjct: 502 IYRDILKKLGEMIDVIERTAKSIAIIDVISSLARVALEMNYTRPEVDESMDIEIRNGRHP 561 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE F+ ND ++ + +LTGPNM GKST++RQ ALIVI+AQMG Sbjct: 562 VVE------LYTDFVPNDTHINS-----DARFIILTGPNMAGKSTYMRQVALIVILAQMG 610 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA YA IGIVD++++RVG++D++ GRSTFM+EM+E A+ILN AT +S ++LDEIGR Sbjct: 611 SFVPADYAKIGIVDRIYTRVGASDDITRGRSTFMMEMVELANILNTATERSLILLDEIGR 670 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GT+T DGL+IAW+ E++H + R R + ATH+H L DL L N + V ++ +G+I Sbjct: 671 GTSTYDGLAIAWSITEHIHNSIRARTIFATHYHHLIDLENVLDNVRNYHIAVKETQDGLI 730 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 F+ KV+PG SYGI+V KLAG+P V+ RA +IL E+ ++R IQT Sbjct: 731 FVRKVMPGGMSKSYGIEVAKLAGVPEKVVKRAKEILNLIEE---EKVIEVRRGKKIIQTM 787 Query: 861 E-SKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + N S +++IK +++ ++PL AL L +K Sbjct: 788 LFGEENCSD----ILDEIKRMDIMNLTPLEALNKLNELK 822 >gi|320161475|ref|YP_004174699.1| DNA mismatch repair protein MutS [Anaerolinea thermophila UNI-1] gi|319995328|dbj|BAJ64099.1| DNA mismatch repair protein MutS [Anaerolinea thermophila UNI-1] Length = 858 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 316/886 (35%), Positives = 499/886 (56%), Gaps = 54/886 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ +QY+EIK P +++F+R+GDFYE F DA +AS+ L I LT R G +PM G Sbjct: 6 TPIRQQYLEIKRKYPHTILFFRLGDFYETFDQDAEIASKELDIVLTSRPVARGVRVPMAG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQI-ESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 +P H +Y+ +LI+ G+ +AICEQ+ + P+ K L R VVR+VTPGTL E L Sbjct: 66 IPYHAVENYLARLIEKGYHVAICEQVGDQPV-------KGLFPREVVRVVTPGTLIEPTL 118 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLIS----DIMRIDPREIIFS 200 L +NYL++V T IA++DISTG + ++ ++S +++R++P EI+ Sbjct: 119 LKGDRNNYLVSVVVEETHAGIAYVDISTGEYAVTEITGTDILSTLRAELIRLNPAEILIP 178 Query: 201 EK-ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG--SFSQVEK 257 + +LS+ L N F+ + +++ + ++D FG S+ + Sbjct: 179 DTLDLSNGFPGHL--------TRWANWHFEPGRCHEALLNHFQVASLDGFGLRGMSRAIR 230 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLK 316 AA A + Y+ +TQ + + + +D+A R NLE+ T+ +G E SLL Sbjct: 231 -AAGALLQYLSETQPSALNLLTRLSTYSLSEFMVLDAATRRNLELTETIRNGQVEGSLLS 289 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +DY++T G RL + ++ PL D I R + + F+QN +L ++ ++S D+ R Sbjct: 290 VLDYTVTPMGKRLLRQWVSKPLLDLKTIQQRQNVVETFVQNGLLRAELRATMRSLADLER 349 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 ++R+ G P+D+ +R +R+ ++L L D P L+ V + P L+ L Sbjct: 350 LVNRIIAGHATPRDLVALRATLRTMPHLLQ-NLSIDYPA-LQPIVASIATFPDILD-LLE 406 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 ++DD P ++ G +R G A LD ++ IA+L+ E T IK LK+ +N Sbjct: 407 RGITDDPPATLQNTGVIRAGYSAELDHVIEASRHAREWIANLEKVERERTGIKTLKVGYN 466 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+IEV+ +A + + +I +QT+ N RF T E+ + E+ + NA Sbjct: 467 KVFGYYIEVSRGNAHAVPPE------YIRKQTLVNGERFITPEMKEYESLVLNAEERIRE 520 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E F + I +Q +L ++ +A +D ++LA A Y RP + N + D Sbjct: 521 LETRLFREICEQIHQQGNALLQTARGLAELDALLSLAEAAALNQYVRPEVVNEDVLEIHD 580 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE+ L + F+ ND P + + ++TGPNM GKSTFLRQ ALIV+M Sbjct: 581 GRHPVVERYLS--GGERFVPNDAIFE-PGEI----VRIITGPNMSGKSTFLRQTALIVLM 633 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+GS+VPAS A IG+VD++F+R+G+ D + +G+STFMVEMIE A+IL+ AT +S +ILD Sbjct: 634 AQIGSFVPASSARIGVVDRIFTRIGAQDEIHAGQSTFMVEMIEMANILHHATRRSLLILD 693 Query: 737 EIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 EIGRGT+T DG+SIAWA +EY+H R R + ATH+HELT L++ L N + V++ Sbjct: 694 EIGRGTSTYDGVSIAWAVVEYIHNNPDLRARTIFATHYHELTQLAEILPGVRNYNVAVTE 753 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL-- 852 ++ ++FLHK+ PG AD SYGI V +LAGLP +I RA +IL+ E+ K +RL Sbjct: 754 ADGKVVFLHKITPGGADRSYGIHVAQLAGLPKPLIQRANEILRELEQ---SAGKAVRLDP 810 Query: 853 YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P+ + L +E++K L+++ ++P+ A+ LY K Sbjct: 811 IMPQ------QMALFPETNPLLEELKRLDVNSLTPIEAINKLYEWK 850 >gi|160876376|ref|YP_001555692.1| DNA mismatch repair protein MutS [Shewanella baltica OS195] gi|189083190|sp|A9KYG1|MUTS_SHEB9 RecName: Full=DNA mismatch repair protein mutS gi|160861898|gb|ABX50432.1| DNA mismatch repair protein MutS [Shewanella baltica OS195] gi|315268566|gb|ADT95419.1| DNA mismatch repair protein MutS [Shewanella baltica OS678] Length = 856 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 310/888 (34%), Positives = 477/888 (53%), Gaps = 50/888 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 ++L+ TPMMRQY+ +K+ + D L+FYRMGDFYELF+DDA AS LGI+LT RGK G Sbjct: 7 DDLEKHTPMMRQYLTMKAEHHDMLLFYRMGDFYELFYDDAKRASELLGISLTARGKSGGD 66 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H Y+ KL++IG +AICEQI P +K V R VVR+VTPGTL Sbjct: 67 PIPMAGLPYHAVEGYLAKLVQIGQSVAICEQIGDPATSK-----GPVERKVVRIVTPGTL 121 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREII 198 T++ LL N L AV + + + A +D+S+G F I+ + L +++ R +P EI+ Sbjct: 122 TDEALLQERQDNLLAAVYQGKIGFGYATLDVSSGRFVIAELDTRESLEAELQRTNPVEIL 181 Query: 199 FSEKELSHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFG-SF 252 +SE F LG + +P FD+ S + + + FG + Sbjct: 182 YSED----------FGELGLLNGFKGKRRRPEWEFDYDTSIKLLLTQFGTKDLHGFGIAD 231 Query: 253 SQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 +++ AA + Y+K TQ P I R + ++ +D+A R NLE+ + L+G R+ Sbjct: 232 ARLSLQAAGCLMQYVKDTQRTALPHINAITRFNQTDSIVLDAATRRNLELTQNLAGGRDN 291 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 +L +D + T G R+ I PL D I R ++ + + + + LK+ Sbjct: 292 TLAAVLDNTATPMGSRMLQRWIHQPLRDPKHIKARQQAVTELL-DTTAHEGLHEQLKALG 350 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEKLKKLPQS 430 D+ R ++RL + P+D A +R + + P +LR + + + P Sbjct: 351 DIERIMARLALRTARPRDFARLRQALGLLPELQQSLSTLSAPHTTQLR---QHIGEFPAE 407 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 + L + D+ P RDGG +R+G ++ LDE R L + + + L+ + E T I Sbjct: 408 -QALLERAIVDNPPMLIRDGGVIREGYNSELDEWRGLSEGASDYLVQLEAREKERTGINT 466 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ +N GY+IEV+ +S + + + RQT+ N+ R+ T EL + E ++ ++ Sbjct: 467 LKVGYNRVHGYYIEVSRLQSSQVPLN------YQRRQTLKNMERYITPELKEYEEKVLSS 520 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 AL +E + +E L + I+ + L ++ A +D+ A A+ Y P + Sbjct: 521 QGKALALEKQLWEQLFDLILPKLHELQAFARAAAELDVLSNFAERAETLGYTCPELSQDI 580 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 ++ GRHP+VE+ S PFIAN L N ++ ++TGPNMGGKST++RQ Sbjct: 581 GVQIEAGRHPVVERV----SQTPFIANPVTL-----HNQRRMLIVTGPNMGGKSTYMRQV 631 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI +MA +G +VPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ A+ Sbjct: 632 ALITLMAHIGCFVPADRALIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILHNASAS 691 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V++DEIGRGT+T DGLS+AW+ EYL + L ATH+ ELT L + + +N L Sbjct: 692 SLVLMDEIGRGTSTYDGLSLAWSAAEYLAQQVGAMTLFATHYFELTQLPELMAGVYNVHL 751 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM 850 + ++ I F+H V G A SYG+QV LAG+PN VI A L+ E H + Sbjct: 752 DAIEHDDTIAFMHAVQEGAASKSYGLQVAALAGVPNKVIKAAKHKLQQLESRDHQAEGTR 811 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + E N + + K+ +N D ++P AL LY +K Sbjct: 812 TPIQSLLALPEPVENPA------LTKLSNINPDNLTPKQALDLLYELK 853 >gi|219871607|ref|YP_002475982.1| DNA mismatch repair protein MutS [Haemophilus parasuis SH0165] gi|219691811|gb|ACL33034.1| DNA mismatch repair protein [Haemophilus parasuis SH0165] Length = 853 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 311/888 (35%), Positives = 485/888 (54%), Gaps = 56/888 (6%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG+ G+ IPM GVP Sbjct: 1 MMAQYLQLKAQNPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGQSAGEPIPMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H Y+ KL+ +G +AICEQI P +K V R VVR++TPGT++++ LL Sbjct: 61 YHAVEGYLAKLVALGESVAICEQIGDPAT-----SKGPVERKVVRIITPGTVSDEALLPE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKELSH 206 N + A+ + + +A+A +D+++G F IS N + L +++ R +P EI++ E + S Sbjct: 116 RQDNLVAAIYQEKGVFALATLDMASGRFLISELPNKEALSAELQRTEPAEILYPE-DFSD 174 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAIS 265 ++ L +P F+ + + + + FG + V AA + Sbjct: 175 VGILQGYKGLRR----RPVWEFELVTAIQLLNRQFGTQNLTGFGVEKAVVALCAAGCVLH 230 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y ++TQ P I T+ +DSA R NLE+ L+G E +L +D +T Sbjct: 231 YAQETQRTALPHINSIHLAQNSDTVLLDSATRRNLELTTNLAGGTENTLTSVLDKCVTSM 290 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 G RL I P+ D K++TR +I +Q I P+Q +L+ D+ R L+R+ + Sbjct: 291 GSRLLKRWIHQPIRDLAKLHTRQQTI-LALQKNERIEPLQPLLQQVGDMERILARVALRT 349 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT---------LS 436 P+D+ +R + +P+ ++ + + L +L++ L+ Sbjct: 350 ARPRDLTRLRTAL------------EHIPDIVKHSQHQTACLDNTLQQIADFSELFELLN 397 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + D+ P RDGG + +G +A LDE RSL + + + + L+ + +T I LKI N Sbjct: 398 QAIIDNPPQLIRDGGVIAEGYNAELDEWRSLAEGATKFLEDLEARERAKTGIDTLKIGFN 457 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+I+++ A ++ ++ RQT+ N R+ EL E+++ A ++L Sbjct: 458 AVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKTYEDKVLKAKGASLA 511 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E + ++ L ++ + L AS V+A +D+ LA A+ NY P + +K Sbjct: 512 LEKQLYDELFELLMPRLGELQLASFVLAELDVLTNLAERAESLNYVMPSFSHQRGVNIKG 571 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE+ LK PFIAN L+ L ++TGPNMGGKST++RQ ALI +M Sbjct: 572 GRHPVVEQVLK----TPFIANPVLLNPQR-----HLLIVTGPNMGGKSTYMRQIALITLM 622 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+Q++ S V++D Sbjct: 623 AYIGSFVPADSAEIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQSSENSLVLVD 682 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DGLS+AWA E+L + + L ATH+ ELT L LK N L + N Sbjct: 683 EIGRGTSTYDGLSLAWACAEWLAKKTQSLTLFATHYFELTSLPNQLKGVANIHLDALEHN 742 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH------NQKDM 850 + I F+H V G A SYG+ V LAG+P VI A L E+L NQ+ Sbjct: 743 DTIAFMHSVQEGAASKSYGLAVAALAGVPKQVIQLAKQKLTQLERLSQQTAQLDANQQQD 802 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 L+ +Q E + L + K+ + + ++ DE++P AL+ LY +K Sbjct: 803 LLFSANLQNAEPISPLIEPSKV-EQALAEIDPDELTPKQALEMLYRLK 849 >gi|238784154|ref|ZP_04628168.1| DNA mismatch repair protein mutS [Yersinia bercovieri ATCC 43970] gi|238715000|gb|EEQ06998.1| DNA mismatch repair protein mutS [Yersinia bercovieri ATCC 43970] Length = 851 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 315/885 (35%), Positives = 486/885 (54%), Gaps = 45/885 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 + L S TPMM+QY+ +K+ +PD L+FYRMGDFYELF+ DA AS+ L I+LTKRG G+ Sbjct: 5 DKLDSHTPMMQQYLRLKAQHPDILLFYRMGDFYELFYSDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H+ Y+ KL+++G AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGVPYHSIEPYLAKLVQLGESAAICEQIGDPAT-----SKGPVERKVVRIVTPGTV 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F+++ + + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDARGFGYATLDISSGRFRVAEPDDIETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + E + E SL E + +P F+ ++ ++ + + FG Q + Sbjct: 180 YPE----NFEQMSLIEQRHGLR-RRPLWEFELETAKQQLNLQFGTRDLIGFG-VEQAHQA 233 Query: 259 --AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 AA + Y+K TQ + P I E Q + +D+A R NLE+ LSG E +L Sbjct: 234 LRAAGCLLQYVKDTQRTSLPHIRGLTMERQQDGIVMDAATRRNLELTLNLSGGTENTLAA 293 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D S+T G R+ + P+ D + R +I +Q+ + +Q L+ D+ R Sbjct: 294 ILDCSVTAMGSRMLKRWLHMPVRDIKVLTDRQQAIGG-LQD--ITAELQTPLRQVGDLER 350 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKT 434 L+RL + P+D+A +R + I L D+P + L V + +L LE+ Sbjct: 351 ILARLALRTARPRDLARMRHAFQQLPEIHRLLQPVDVPHVQNLLSQVGQFDQLLDLLERA 410 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + + P RDGG + G +A LDE R+L D + + L+++ E+ + LK+ Sbjct: 411 IV----ETPPVLVRDGGVIAPGYNAELDEWRALADGATDYLDRLEIREREKLGLDTLKVG 466 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N GY+I+V+ + ++ ++ RQT+ N R+ EL + E+++ + A Sbjct: 467 FNGVHGYYIQVSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSKGKA 520 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L IE +E + + ++ L ++ +A +D+ LA A+ NY P + + + Sbjct: 521 LAIEKGLYEEIFDLLLPHLSELQTSANALAELDVLSNLAERAETLNYSCPTLSDKPGIKI 580 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 GRHP+VE+ L S+PFI+N LS ++ ++TGPNMGGKST++RQ ALIV Sbjct: 581 IGGRHPVVEQVL----SEPFISNPLTLSPQR-----RMLIITGPNMGGKSTYMRQTALIV 631 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++A MGSYVPA A IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT QS V+ Sbjct: 632 LLAHMGSYVPADQATIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEQSLVL 691 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 692 MDEIGRGTSTYDGLSLAWACAENLASRIKAMTLFATHYFELTTLPEKMEGVVNVHLDALE 751 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 E I F+H V G A SYG+ V LAG+P VI RA LK E L + Sbjct: 752 HGETIAFMHSVQDGAASKSYGLAVAALAGVPRDVIKRARQKLKELESLSNSAAAS----- 806 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 +I + L++ VE ++ L+ D +SP AL+ +Y +K+ Sbjct: 807 -KIDGSQ-LTLLNEETPPAVEALEALDPDSLSPRQALEWIYRLKS 849 >gi|313204209|ref|YP_004042866.1| DNA mismatch repair protein muts [Paludibacter propionicigenes WB4] gi|312443525|gb|ADQ79881.1| DNA mismatch repair protein MutS [Paludibacter propionicigenes WB4] Length = 870 Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust. Identities = 309/883 (34%), Positives = 495/883 (56%), Gaps = 36/883 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+Q+ EIK+ +PD+++ +R GDFYE F DA+ AS+ LGITLTKR GK + + G Sbjct: 8 TPMMKQFNEIKAKHPDAILLFRCGDFYETFSTDAIQASQILGITLTKRANGAGKTVELAG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KL++ G R+AIC+Q+E P KK +V+R V LVTPG D L Sbjct: 68 FPHHALDTYLPKLVRAGRRVAICDQLEDPKLTKK-----IVKRGVTELVTPGVSYSDTTL 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 + ++ +L +V + ++++DISTG F ++ N + + + P+E+++ + Sbjct: 123 NHKENTFLASVHLNKNHVGVSFLDISTGEFLVAEGNAEYVDKLLNSFGPKEVLYDRSK-- 180 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI- 264 ++++ F T + + S +E R+ ++ I + FG + AA AI Sbjct: 181 KKDFEAFFGTKFFTYALEDWAYSPDSANE-RLLKHFEIKNLKGFGVDNLPNGVVAAGAIM 239 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQSLLKTIDYSIT 323 Y+ +T I R + + +++D NLE+ +++ G+R +LL ID +I+ Sbjct: 240 HYLDQTHHQQTGHITQLSRIEEERFVWLDRFTVRNLELYGSINEGAR--TLLDVIDKTIS 297 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G R+ IA PL D IN RL + F +NP L +++ + D+ R +S++ + Sbjct: 298 PMGARMLKRWIAFPLKDVKPINERLSVVEHFFKNPDLKLLLEQNVALIGDLERIISKVAV 357 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 GR P+++ ++ +++ I + L + LR ++L EK + + +D Sbjct: 358 GRINPREVVQLKVALKA-IEPIKLACSQSDNDTLRKIADQLNACAVISEK-IDKEIDNDP 415 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P F GG L+ G DA LDE R L K + +Q + + ET I +LKI NN GY+I Sbjct: 416 PNFIHRGGVLKSGVDAELDELRQLAYSGKDFLQKIQERESAETGIPSLKISFNNVFGYYI 475 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EV + + KD + + +I +QT+ N R+ T EL E +I A L IE+ F Sbjct: 476 EVRN-----MHKD-KVPETWIRKQTLVNAERYITQELKVYEEKILGAEEKILSIEIRLFN 529 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L ++++ ++ S +IA +D ++ ++ E Y RP + ++ +K GRHP++E Sbjct: 530 DLVLSLVDYITAIQLDSNLIAQLDCLLSFTRVSSENKYVRPQVTDTDVLEIKQGRHPVIE 589 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 K L S +IAND L D + ++ ++TGPNM GKS LRQ A+I +MAQ+G +V Sbjct: 590 KQLPIGES--YIANDVYL----DNETQQIIIITGPNMSGKSALLRQTAIITLMAQIGCFV 643 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA A IG+VDK+F+RVG++DN++ G STFMVEM E ASILN +N+S V+ DE+GRGT+ Sbjct: 644 PAESASIGVVDKIFTRVGASDNISQGESTFMVEMNEAASILNNLSNRSLVLFDELGRGTS 703 Query: 744 TLDGLSIAWATIEYLHETNRCRG--LLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 T DG+SIAWA +EY+HE C+ L ATH+HEL ++ KS R N + V + ++ +IF Sbjct: 704 TYDGISIAWAIVEYIHEQVSCKAKTLFATHYHELNEMEKSFHRIKNYNVSVKEVDKKVIF 763 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKE 861 L K++ G ++HS+GI V K+AG+P +++ R+ ILK E + Q + EI + Sbjct: 764 LRKLVRGGSEHSFGIHVAKMAGMPQSIVKRSEQILKQLET--DNRQSGISKPVGEIAEQR 821 Query: 862 SKNNLS--KNDKLFVEK----IKCLNLDEMSPLTALKTLYAVK 898 LS K D +E+ IK L+++ ++P+ AL L VK Sbjct: 822 EGFQLSFFKLDDPVLEQIRDEIKNLDINNLTPVEALNKLNEVK 864 >gi|121533677|ref|ZP_01665504.1| DNA mismatch repair protein MutS [Thermosinus carboxydivorans Nor1] gi|121307668|gb|EAX48583.1| DNA mismatch repair protein MutS [Thermosinus carboxydivorans Nor1] Length = 861 Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust. Identities = 293/835 (35%), Positives = 478/835 (57%), Gaps = 52/835 (6%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 ++ TPM+ QY EIK + D ++F+R+GDFYE+FF+DA +A+R L ITLT R G+ +P Sbjct: 3 ETYTPMIEQYREIKRQHADKILFFRLGDFYEMFFEDAEIAARELEITLTGRDGGAGRRVP 62 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP H A+ YI +LI G+++AICEQ+E P +AK +VRR V++++TPGT+ D Sbjct: 63 MCGVPFHAADTYIARLINKGYKVAICEQVEDPKQAK-----GIVRREVIKIITPGTVLSD 117 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTG---------IFKISTSNHDRLISDIMRID 193 LL +NYL+ + +A DISTG ++++T L + R+ Sbjct: 118 VLLPDKSNNYLVVIHEQNDIITMAGADISTGECYWADFAGPYRLNT-----LCDHLYRLS 172 Query: 194 PREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS 253 P EI+ + L+ E F N+ ++S + + ++ F Sbjct: 173 PAEIVLT-GLLTDKETLDTFLANRLHGCTITNLAIENSETTQELLQHH----------FP 221 Query: 254 QVEKTAAAAAIS------YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL- 306 E + AAI+ Y+ +T + + R + + ID+AA NLEI R L Sbjct: 222 DEELPHSGAAIAVGHLLYYLHQTLKTDLSHVNRLMRYNAAEFMTIDTAALRNLEITRNLR 281 Query: 307 SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK 366 G R+ +LL +D++ T GGRL + + PL +I R D+++ + NP + +Q+ Sbjct: 282 DGGRKDTLLSILDFTQTAMGGRLLKKWLEYPLLSVHEIIRRQDAVDELLTNPGVRQVLQE 341 Query: 367 ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK 426 L D+ R ++R ++G +D+ ++ + S + + L +++ + L G + + Sbjct: 342 KLGHIYDLERIVTRAEVGTANGRDLIALKQSL-SSLPTIKLHVQS-MQSALLGEIGAKME 399 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 + + + + D+ P RDGG ++ G + LDE R + S++ + + + + E T Sbjct: 400 TYEDIVALIDRAIVDNPPHSVRDGGIIKTGYNQELDELREIAQDSQQWLMAFEAREKERT 459 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 IK+LK+ +N GY+IEVT+++ + + + +I +QT+++ R+ T EL + E + Sbjct: 460 GIKSLKVGYNKVFGYYIEVTNANRAAVPSE------YIRKQTLTSAERYITPELKEFETK 513 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 + A + +E F I+ + + + L ++ +A+ID ++L+ A NY RP I Sbjct: 514 VLGAQEKIVQLEYYLFTIVRDCVKKHIPRLQETARQLAVIDCLVSLSEAAARYNYRRPAI 573 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 N+ I++DGRHP+VE+ L ++ F+ ND +L + + ++ ++TGPNM GKST+ Sbjct: 574 TNNREIIIRDGRHPVVERLLDREV---FVPNDTEL----NHHDCEVMIITGPNMAGKSTY 626 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ AL+V+MAQ+GS++PA A I VD++F+RVG++D+LA+G+STFMVEM E A IL Sbjct: 627 MRQVALLVLMAQVGSFIPAREAAITPVDRIFTRVGASDDLATGQSTFMVEMNEVAHILKH 686 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT S VILDEIGRGT+T DG+SIA A IEY+ + + + L ATH+HELT+L++ K Sbjct: 687 ATTNSLVILDEIGRGTSTFDGMSIARAVIEYIKDRIKAKTLFATHYHELTELAEQKKGIK 746 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 N T+ V + ++FL +++PG AD SYGI V +LAGLP VI RA IL E+ Sbjct: 747 NFTVAVKERGSEVVFLRRIVPGGADKSYGIHVARLAGLPKKVIERAQTILAELEQ 801 >gi|168207459|ref|ZP_02633464.1| DNA mismatch repair protein MutS [Clostridium perfringens E str. JGS1987] gi|170661161|gb|EDT13844.1| DNA mismatch repair protein MutS [Clostridium perfringens E str. JGS1987] Length = 909 Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust. Identities = 297/836 (35%), Positives = 481/836 (57%), Gaps = 36/836 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY EIK D ++F+R+GDFYE+FF+DA A+R L + LT R L K PMCG Sbjct: 4 TPMMRQYFEIKENYKDCILFFRLGDFYEMFFEDAETAARELELVLTGRDCGLEKRAPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H +N YI +L+ G+++AICEQ+E P AK +V+R+V++++TPGT T+ + Sbjct: 64 IPFHASNSYIGRLVAKGYKVAICEQVEDPKVAK-----GIVKRDVIKVITPGTYTDSSFV 118 Query: 146 SPTDSNYLMAVARI--RTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREIIFSE 201 T +NY+M + R ++A DISTG F + ++ ++ +I + +P+EII + Sbjct: 119 EETKNNYIMTIYSDLERNRCSLAITDISTGDFLATEGELEKGVILDEISKFNPKEIILLD 178 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 L K + T + +P +F+ + E A + + S S + K ++ Sbjct: 179 S-LDQELIKDITLTTPALISRKPIEYFEKNFEEVLNAQFG-----EKSNSLSLMVKKSSN 232 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 A + YI TQ ++ I E + + ID ++R NLE+ L S++ SLL +D Sbjct: 233 ALVKYILDTQKISLTNINDIEVYSLVDFMTIDLSSRRNLELTENLREKSKKGSLLWVLDK 292 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G R+ I PL + KI RL+++ + L + +++ L D+ R L + Sbjct: 293 TETSMGSRMLRRWIEEPLVNKEKITLRLNAVEELFNDLSLNDSLKEALHDIYDIERILGK 352 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 + KD+ ++ I N+ + + L + ++ L+ + + LEK++ Sbjct: 353 ISNKNANAKDLIALKTSIGKIPNVKGIIENCTSSLLKNYYNNLDDLRDIYELLEKSIK-- 410 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 +D +DG ++DG ++ +DE R + K I+SL+ + E T IK+LK+ N Sbjct: 411 --EDPSLTLKDGDLIKDGFNSEIDELRLAKTNGKDWISSLENREREFTGIKSLKVGFNKV 468 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IE++ ++ S + + R+I +QT++N RF T EL ++E ++ A+ +E Sbjct: 469 FGYYIEISKANYSSI-----PEGRYIRKQTLANAERFITPELKEIEEKLLGASEKLCSLE 523 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F + N + + L +++IA +D LA +A E ++ +P I+ +++GR Sbjct: 524 YDIFLDIRNEVENHIDRLKTTAKIIAELDCISNLAFVALENDFIKPEINEDGETKIENGR 583 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VEK + + FI ND + +K+ +L ++TGPNM GKST++RQ A+I +M Q Sbjct: 584 HPVVEKVIPKGE---FIPNDTII----NKDDNQLLIITGPNMAGKSTYMRQVAIITLMCQ 636 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPAS A+I +VDK+F+R+G++D+LA G+STFMVEM E ++IL AT S V+LDE+ Sbjct: 637 IGSFVPASKANISVVDKIFTRIGASDDLAGGKSTFMVEMWEVSNILKNATENSLVLLDEV 696 Query: 739 GRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 GRGT+T DGLSIAW+ IEY+ + RC+ L ATH+HELT L + N ++ V + + Sbjct: 697 GRGTSTYDGLSIAWSVIEYICKNKNLRCKTLFATHYHELTKLEGEIHGVRNYSVAVKEVD 756 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 IIFL K+I G AD SYGI+V KLAG+P+ VI+RA +IL+T E + D+ L Sbjct: 757 NNIIFLRKIIEGGADQSYGIEVAKLAGIPDEVINRAKEILETLEMESSKDNLDLAL 812 >gi|134277623|ref|ZP_01764338.1| DNA mismatch repair protein MutS [Burkholderia pseudomallei 305] gi|134251273|gb|EBA51352.1| DNA mismatch repair protein MutS [Burkholderia pseudomallei 305] Length = 894 Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust. Identities = 310/896 (34%), Positives = 466/896 (52%), Gaps = 40/896 (4%) Query: 13 SEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTK 72 S+Q E + TPMM+QY+ IKS +PD+LVFYRMGDFYELFF+DA A+R L +TLT+ Sbjct: 11 SKQQLTEAAFSNHTPMMQQYLRIKSEHPDTLVFYRMGDFYELFFEDAEKAARLLDLTLTQ 70 Query: 73 RGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVR 132 RG G I M GVP H Y+ KL+K G AICEQI P +K V R VVR Sbjct: 71 RGASAGTPIKMAGVPHHAVEQYLAKLVKFGESAAICEQIGDPAT-----SKGPVERKVVR 125 Query: 133 LVTPGTLTEDQLLSPTDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTSNHDRLI 186 +VTPGTLT+ LLS +L+A+ + + +AW+++++G +++ D+L Sbjct: 126 VVTPGTLTDAALLSDKSDVFLLALCVGHNKRGVASNIGLAWLNLASGALRLAELAPDQLG 185 Query: 187 SDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTV 246 + + RI P EI+ ++ + +S+ +G + P FD + R+ D + ++ Sbjct: 186 AALERIRPAEILAADGTI-----ESVPAGMGAITRV-PAWHFDIASGTQRLCDQLEVASL 239 Query: 247 DTFGSFSQVEKTAAAAAIS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT 305 D FG+ + AA A+ Y TQ + + E+ + +D + R NLE+ T Sbjct: 240 DGFGAQALTSANGAAGALLIYAAATQGQQLRHVRSLKVENESEYIGLDPSTRRNLELTET 299 Query: 306 LSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP--ILINP 363 L G+ +L +D T G RL + P S R +I + P ++ Sbjct: 300 LRGTESPTLYSLLDTCCTAMGSRLLRHWLHHPPRASVAAQARHQAIGALLDAPPNAGLDS 359 Query: 364 IQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEK 423 ++ L+ DV R RL + P+D++ +RD + + + G +E Sbjct: 360 LRSALRQIADVERITGRLALLSARPRDLSSLRDTFAALPALRERVAEIASNAAALGRLEA 419 Query: 424 LKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 + P L+ ++ + RDGG + G DA LDE R + + + + L+ + Sbjct: 420 ALEPPPGCLDLLTRAIAAEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLETRER 479 Query: 484 EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDL 543 T I NL++++N G++IEVT + D + RQT+ N R+ T EL Sbjct: 480 ARTGISNLRVEYNKVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTF 533 Query: 544 ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCR 603 E++ +A AL E ++ + A++ E + +A +D+ A A A+ ++ Sbjct: 534 EDKALSAQERALARERALYDGVLQALLPHIEGCQRVASGLAELDLLAAFAERARTLDWVA 593 Query: 604 PIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 P + + GRHP+VE ++Q FIANDC L+ KL L+TGPNMGGK Sbjct: 594 PEFTDEIGIEIDQGRHPVVEAQVEQ-----FIANDCALNPER-----KLLLITGPNMGGK 643 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 STF+RQ ALI +MA +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+I Sbjct: 644 STFMRQTALIALMAYVGSYVPAKAARFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAI 703 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLK 783 LN AT S V++DEIGRGT+T DGL++AWA +L NRC L ATH+ ELT L Sbjct: 704 LNDATPHSLVLMDEIGRGTSTFDGLALAWAIARHLLSHNRCYTLFATHYFELTQLPAEFP 763 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY 843 + N L + GI+FLH V G A+ SYG+QV +LAG+P VI A L E+ Sbjct: 764 QAANVHLSAVEHGHGIVFLHAVEEGPANQSYGLQVAQLAGVPAPVIRAARKHLAHLEQQS 823 Query: 844 HHN---QKDMRLYYPEIQTKE-SKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 Q D+ P + E ++ + +E++ L+ D++ P AL LY Sbjct: 824 AAQATPQLDLFAAPPVVDEPECNEPPAAATPHPALERLLALDPDDLKPRDALDLLY 879 >gi|254184405|ref|ZP_04890995.1| DNA mismatch repair protein MutS [Burkholderia pseudomallei 1655] gi|184214936|gb|EDU11979.1| DNA mismatch repair protein MutS [Burkholderia pseudomallei 1655] Length = 939 Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust. Identities = 307/883 (34%), Positives = 461/883 (52%), Gaps = 40/883 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ IKS +PD+LVFYRMGDFYELFF+DA A+R L +TLT+RG G I M G Sbjct: 69 TPMMQQYLRIKSEHPDTLVFYRMGDFYELFFEDAEKAARLLDLTLTQRGASAGTPIKMAG 128 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H Y+ KL+K G AICEQI P +K V R VVR+VTPGTLT+ LL Sbjct: 129 VPHHAVEQYLAKLVKFGESAAICEQIGDPA-----ASKGPVERKVVRVVTPGTLTDAALL 183 Query: 146 SPTDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 S +L+A+ + + +AW+++++G +++ D+L + + RI P EI+ Sbjct: 184 SDKSDVFLLALCVGHNKRGVASNIGLAWLNLASGALRLAELAPDQLGAALERIRPAEILA 243 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 ++ + +S+ +G + P FD + R+ D + ++D FG+ + Sbjct: 244 ADGTI-----ESVPAGMGAITRV-PAWHFDIASGTQRLCDQLEVASLDGFGAQALTSANG 297 Query: 260 AAAAIS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA A+ Y TQ + + E+ + +D + R NLE+ TL G+ +L + Sbjct: 298 AAGALLIYAAATQGQQLRHVRSLKVENESEYIGLDPSTRRNLELTETLRGTESPTLYSLL 357 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP--ILINPIQKILKSSPDVPR 376 D T G RL + P S R +I + P ++ ++ L+ DV R Sbjct: 358 DTCCTAMGSRLLRHWLHHPPRASVAAQARHQAIGALLDAPPNAGLDSLRSALRQIADVER 417 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 RL + P+D++ +RD + + + G +E + P L+ Sbjct: 418 ITGRLALLSARPRDLSSLRDTFAALPALRERVAEIASNAAALGRLEAALEPPPGCLDLLT 477 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 ++ + RDGG + G DA LDE R + + + + L+ + T I NL++++N Sbjct: 478 RAIAAEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLETRERARTGISNLRVEYN 537 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 G++IEVT + D + RQT+ N R+ T EL E++ +A AL Sbjct: 538 KVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTFEDKALSAQERALA 591 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 E ++ + A++ E + +A +D+ A A A+ ++ P + + Sbjct: 592 RERALYDGVLQALLPHIEGCQRVASGLAELDLLAAFAERARTLDWVAPEFTDEIGIEIDQ 651 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE ++Q FIANDC L+ KL L+TGPNMGGKSTF+RQ ALI +M Sbjct: 652 GRHPVVEAQVEQ-----FIANDCALN-----PERKLLLITGPNMGGKSTFMRQTALIALM 701 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+ILN AT S V++D Sbjct: 702 AYVGSYVPAKAARFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILNDATPHSLVLMD 761 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DGL++AWA +L NRC L ATH+ ELT L + N L + Sbjct: 762 EIGRGTSTFDGLALAWAIARHLLSHNRCYTLFATHYFELTQLPAEFPQAANVHLSAVEHG 821 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN---QKDMRLY 853 GI+FLH V G A+ SYG+QV +LAG+P VI A L E+ Q D+ Sbjct: 822 HGIVFLHAVEEGPANQSYGLQVAQLAGVPAPVIRAARKHLAHLEQQSAAQATPQLDLFAA 881 Query: 854 YPEIQTKE-SKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 P + E ++ + +E++ L+ D++ P AL LY Sbjct: 882 PPVVDEPECNEPPAAATPHPALERLLALDPDDLKPRDALDLLY 924 >gi|167720301|ref|ZP_02403537.1| DNA mismatch repair protein [Burkholderia pseudomallei DM98] Length = 939 Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust. Identities = 308/883 (34%), Positives = 462/883 (52%), Gaps = 40/883 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ IKS +PD+LVFYRMGDFYELFF+DA A+R L +TLT+RG G I M G Sbjct: 69 TPMMQQYLRIKSEHPDTLVFYRMGDFYELFFEDAEKAARLLDLTLTQRGASAGTPIKMAG 128 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H Y+ KL+K G AICEQI P +K V R VVR+VTPGTLT+ LL Sbjct: 129 VPHHAVEQYLAKLVKFGESAAICEQIGDPAT-----SKGPVERKVVRVVTPGTLTDAALL 183 Query: 146 SPTDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 S +L+A+ + + +AW+++++G +++ DRL + + RI P EI+ Sbjct: 184 SDKSDVFLLALCVGHNKRGVASNIGLAWLNLASGALRLAELAPDRLGAALERIRPAEILA 243 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 ++ + +S+ +G + P FD + R+ D + ++D FG+ + Sbjct: 244 ADGTI-----ESVPAGMGAITRV-PAWHFDIASGTQRLCDQLEVASLDGFGAQALTSANG 297 Query: 260 AAAAIS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA A+ Y TQ + + E+ + +D + R NLE+ TL G+ +L + Sbjct: 298 AAGALLIYAAATQGQQLRHVRSLKVENESEYIGLDPSTRRNLELTETLRGTESPTLYSLL 357 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP--ILINPIQKILKSSPDVPR 376 D T G RL + P S R +I + P ++ ++ L+ DV R Sbjct: 358 DTCCTAMGSRLLRHWLHHPPRASVAAQARHQAIGALLDAPPNAGLDSLRSALRQIADVER 417 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 RL + P+D++ +RD + + + G +E + P L+ Sbjct: 418 ITGRLALLSARPRDLSSLRDTFAALPALRERVAEIASNAAALGRLEAALEPPPGCLDLLT 477 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 ++ + RDGG + G DA LDE R + + + + L+ + T I NL++++N Sbjct: 478 RAIAAEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLETRERARTGISNLRVEYN 537 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 G++IEVT + D + RQT+ N R+ T EL E++ +A AL Sbjct: 538 KVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTFEDKALSAQERALA 591 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 E ++ + A++ E + +A +D+ A A A+ ++ P + + Sbjct: 592 RERALYDGVLQALLPHIEGCQRVASGLAELDLLAAFAERARTLDWVAPEFTDEIGIEIDQ 651 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE ++Q FIANDC L+ + KL L+TGPNMGGKSTF+RQ ALI +M Sbjct: 652 GRHPVVEAQVEQ-----FIANDCALN-----SERKLLLITGPNMGGKSTFMRQTALIALM 701 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+ILN AT S V++D Sbjct: 702 AYVGSYVPAKAARFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILNDATPHSLVLMD 761 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DGL++AWA +L NRC L ATH+ ELT L + N L + Sbjct: 762 EIGRGTSTFDGLALAWAIARHLLSHNRCYTLFATHYFELTQLPAEFPQAANVHLSAVEHG 821 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN---QKDMRLY 853 GI+FLH V G A+ SYG+QV +LAG+P VI A L E+ Q D+ Sbjct: 822 HGIVFLHAVEEGPANQSYGLQVAQLAGVPAPVIRAARKHLAHLEQQSAAQATPQLDLFAT 881 Query: 854 YPEIQTKE-SKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 P + E ++ + +E++ L+ D++ P AL LY Sbjct: 882 PPVVDEPECNEPPAAATPHPALERLLELDPDDLKPRDALDLLY 924 >gi|189083217|sp|B0KSD2|MUTS_PSEPG RecName: Full=DNA mismatch repair protein mutS Length = 861 Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust. Identities = 313/892 (35%), Positives = 488/892 (54%), Gaps = 54/892 (6%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 + + TPMM+QY ++K+ +PD L+FYRMGDFYE+F++DA A++ L ITLT RG+ G+ Sbjct: 7 DFTAHTPMMQQYWKLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQS 66 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCG+P H+ Y+ KL+K+G + ICEQI P +K V R VVR++TPGT++ Sbjct: 67 IPMCGIPFHSLEGYLAKLVKLGESVVICEQIGDPAT-----SKGPVERQVVRIITPGTVS 121 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIF 199 ++ LL N + A+ + +A +DI++G F + + L++++ R++P E++ Sbjct: 122 DEALLDERRDNLIAALLGDERLFGLAVLDITSGNFSVQEIKGWENLLAELERLNPVELLI 181 Query: 200 SE---KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 + ++L AE + A + FD + + + + FG Sbjct: 182 PDDWPRDLP-AEKRP-------GARRRAPWDFDRDSARKALCQQFATKDLKGFGCDKLTL 233 Query: 257 KTAAAAA-ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA ++Y K+TQ P + E + T+ +D A+R NLE+ L+G R+ +L Sbjct: 234 AIGAAGCLLTYAKETQRTALPHLRSLRHERLDDTVILDGASRRNLELDINLAGGRDNTLQ 293 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 ID T RL + + PL D + R DSI + + +Q LK D+ Sbjct: 294 SVIDRCQTAMASRLLSRWLNRPLRDLKVLQARQDSIRCLLDS-YRFEKLQPQLKEIGDIE 352 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R L+R+ + P+D+A +RD + + + N + + P R A + L L Sbjct: 353 RILARIGLRNARPRDLARLRDALGALPELQNAMTELEAPHLARLAA--ITGTYPELASLL 410 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + D+ P RDGG L+ G D LD+ ++ + + + + L+ + T + NLK+ + Sbjct: 411 ERAIIDNPPAVIRDGGVLKAGYDNELDDLLAISENAGQFLIDLEAREKARTGLANLKVGY 470 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GYFIE+ + A D +I RQT+ RF T EL E++ +A + AL Sbjct: 471 NRVHGYFIELPTKQAEQAPGD------YIRRQTLKGAERFITPELKAFEDKALSAKSRAL 524 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY-CRPIIDNSTNFIV 614 E ++ L +I L +++ +A +D+ LA A + C +D IV Sbjct: 525 AREKMLYDALLETLISHLAPLQDSAAALAELDVLSNLAERALNLDLNCPRFVDEPCLRIV 584 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 + GRHP+VE+ L + PF+AND L NS ++ ++TGPNMGGKST++RQ ALIV Sbjct: 585 Q-GRHPVVEQVL----TTPFVANDLGLD-----NSTRMLIITGPNMGGKSTYMRQTALIV 634 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++A +GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V+ Sbjct: 635 LLAHIGSFVPAASCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDRSLVL 694 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DE+GRGT+T DGLS+AWA E L + R L ATH+ ELT L +S N L ++ Sbjct: 695 MDEVGRGTSTFDGLSLAWAAAERLAQL-RAYTLFATHYFELTVLPESEPLVANVHLNATE 753 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL-YHHNQKDMRLY 853 NE I+FLH V+PG A SYG+ V +LAG+P VI RA + L E H Q Sbjct: 754 HNERIVFLHHVLPGPASQSYGLAVAQLAGVPTVVIQRAREHLGRLETTSLPHEQP----- 808 Query: 854 YPEIQTKESKNNLSKNDKLF-------VEKIKCLNLDEMSPLTALKTLYAVK 898 P + K++ ++D LF +EK+ L LD+M+P A++ LY +K Sbjct: 809 -PAAKAKDAPQVPHQSD-LFASLPHPAIEKLGKLQLDDMTPRQAIEMLYQLK 858 >gi|108808780|ref|YP_652696.1| DNA mismatch repair protein MutS [Yersinia pestis Antiqua] gi|167398361|ref|ZP_02303885.1| DNA mismatch repair protein MutS [Yersinia pestis biovar Antiqua str. UG05-0454] gi|123072648|sp|Q1C471|MUTS_YERPA RecName: Full=DNA mismatch repair protein mutS gi|108780693|gb|ABG14751.1| DNA mismatch repair protein MutS [Yersinia pestis Antiqua] gi|167050865|gb|EDR62273.1| DNA mismatch repair protein MutS [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 854 Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust. Identities = 313/889 (35%), Positives = 488/889 (54%), Gaps = 52/889 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 + L S TPMM+QY+ +K+ +P+ L+FYRMGDFYELF+ DA AS+ L I+LTKRG G+ Sbjct: 5 DKLDSHTPMMQQYLRLKAQHPEILLFYRMGDFYELFYSDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H+ +Y+ KL+++G AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGVPYHSIENYLAKLVQLGESAAICEQIGDPATSK-----GPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F+++ ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDAKGFGYATLDISSGRFRVAEPADLETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 + E + E SL E + +P F+ ++ ++ + + FG + + Sbjct: 180 YPE----NFEPMSLIEHRHGLR-RRPLWEFELDTAKQQLNLQFGTRDLIGFGVEQAHLAL 234 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA + Y+K TQ + P I E Q + +D+A R NLE+ + LSG E +L Sbjct: 235 RAAGCLLQYVKDTQRTSLPHIRGLTMERQQDGIIMDAATRRNLELTQNLSGGSENTLAAI 294 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D S+T G R+ + P+ D + R +I +Q+ + +Q L+ D+ R Sbjct: 295 LDCSVTPMGSRMLKRWLHMPIRDIRVLTDRQQAIGG-LQD--IAAELQTPLRQVGDLERI 351 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKTL 435 L+RL + P+D+A +R + I L D+P + L V + +L LE+ + Sbjct: 352 LARLALRTARPRDLARMRHAFQQLPEIHRLLQPIDVPHVQNLLSQVGQFDELQDLLERAI 411 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + P RDGG + G +A LDE R+L D + + L+++ E+ + LK+ Sbjct: 412 V----ETPPVLVRDGGVIASGYNAELDEWRALADGATDYLDRLEIREREKLGLDTLKVGF 467 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+I+V+ + ++ ++ RQT+ N R+ EL + E+++ + AL Sbjct: 468 NGVHGYYIQVSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSKGKAL 521 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 IE +E + + ++ L ++ +A +D+ LA A+ NY P + + + Sbjct: 522 AIEKGLYEEIFDLLLPHLPELQLSANALAELDVLANLAERAETLNYSCPTLSDKPGIKIM 581 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ LK+ PFI+N LS ++ ++TGPNMGGKST++RQ ALIV+ Sbjct: 582 GGRHPVVEQVLKE----PFISNPLTLSPQR-----RMLIITGPNMGGKSTYMRQTALIVL 632 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +A +GSYVPA A IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT QS V++ Sbjct: 633 LAHLGSYVPADQATIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEQSLVLM 692 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 693 DEIGRGTSTYDGLSLAWACAENLASRIKAMTLFATHYFELTTLPEKMEGVVNVHLDALEH 752 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH------NQKD 849 E I F+H V G A SYG+ V LAG+P VI RA LK E L ++ + Sbjct: 753 GETIAFMHSVQEGAASKSYGLAVAALAGVPRDVIKRARQKLKELESLSNNAAASTIDGSQ 812 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 M L EI +E ++ L+ D +SP AL+ +Y +K Sbjct: 813 MTLLNEEIPPAVEA----------LEALEALDPDSLSPRQALEWIYRLK 851 >gi|254195822|ref|ZP_04902248.1| DNA mismatch repair protein MutS [Burkholderia pseudomallei S13] gi|169652567|gb|EDS85260.1| DNA mismatch repair protein MutS [Burkholderia pseudomallei S13] Length = 895 Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust. Identities = 310/896 (34%), Positives = 466/896 (52%), Gaps = 40/896 (4%) Query: 13 SEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTK 72 S+Q E + TPMM+QY+ IKS +PD+LVFYRMGDFYELFF+DA A+R L +TLT+ Sbjct: 12 SKQQLTEAAFSNHTPMMQQYLRIKSEHPDTLVFYRMGDFYELFFEDAEKAARLLDLTLTQ 71 Query: 73 RGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVR 132 RG G I M GVP H Y+ KL+K G AICEQI P +K V R VVR Sbjct: 72 RGASAGTPIKMAGVPHHAVEQYLAKLVKFGESAAICEQIGDPAT-----SKGPVERKVVR 126 Query: 133 LVTPGTLTEDQLLSPTDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTSNHDRLI 186 +VTPGTLT+ LLS +L+A+ + + +AW+++++G +++ D+L Sbjct: 127 VVTPGTLTDAALLSDKSDVFLLALCVGHNKRGVASNIGLAWLNLASGALRLAELAPDQLG 186 Query: 187 SDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTV 246 + + RI P EI+ ++ + +S+ +G + P FD + R+ D + ++ Sbjct: 187 AALERIRPAEILAADGTI-----ESVPAGMGAITRV-PAWHFDTASGTQRLCDQLEVASL 240 Query: 247 DTFGSFSQVEKTAAAAAIS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT 305 D FG+ + AA A+ Y TQ + + E+ + +D + R NLE+ T Sbjct: 241 DGFGAQALTSANGAAGALLIYAAATQGQQLRHVRSLKVENESEYIGLDPSTRRNLELTET 300 Query: 306 LSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP--ILINP 363 L G+ +L +D T G RL + P S R +I + P ++ Sbjct: 301 LRGTESPTLYSLLDTCCTAMGSRLLRHWLHHPPRASVAAQARHQAIGALLDAPPNAGLDS 360 Query: 364 IQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEK 423 ++ L+ DV R RL + P+D++ +RD + + + G +E Sbjct: 361 LRSALRQIADVERITGRLALLSARPRDLSSLRDTFAALPALRERVAEIASNAAALGRLEA 420 Query: 424 LKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 + P L+ ++ + RDGG + G DA LDE R + + + + L+ + Sbjct: 421 ALEPPPGCLDLLTRAIAAEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLETRER 480 Query: 484 EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDL 543 T I NL++++N G++IEVT + D + RQT+ N R+ T EL Sbjct: 481 ARTGISNLRVEYNKVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTF 534 Query: 544 ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCR 603 E++ +A AL E ++ + A++ E + +A +D+ A A A+ ++ Sbjct: 535 EDKALSAQERALARERALYDGVLQALLPHIEGCQRVASGLAELDLLAAFAERARTLDWVA 594 Query: 604 PIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 P + + GRHP+VE ++Q FIANDC L+ KL L+TGPNMGGK Sbjct: 595 PEFTDEIGIEIDQGRHPVVEAQVEQ-----FIANDCALNPER-----KLLLITGPNMGGK 644 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 STF+RQ ALI +MA +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+I Sbjct: 645 STFMRQTALIALMAYVGSYVPAKAARFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAI 704 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLK 783 LN AT S V++DEIGRGT+T DGL++AWA +L NRC L ATH+ ELT L Sbjct: 705 LNDATPHSLVLMDEIGRGTSTFDGLALAWAIARHLLSHNRCYTLFATHYFELTQLPAEFP 764 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY 843 + N L + GI+FLH V G A+ SYG+QV +LAG+P VI A L E+ Sbjct: 765 QAANVHLSAVEHGHGIVFLHAVEEGPANQSYGLQVAQLAGVPAPVIRAARKHLAHLEQQS 824 Query: 844 HHN---QKDMRLYYPEIQTKE-SKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 Q D+ P + E ++ + +E++ L+ D++ P AL LY Sbjct: 825 AAQATPQLDLFATPPVVDEPECNEPPAAATPHPALERLLELDPDDLKPRDALDLLY 880 >gi|152971616|ref|YP_001336725.1| DNA mismatch repair protein MutS [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238896212|ref|YP_002920948.1| DNA mismatch repair protein MutS [Klebsiella pneumoniae NTUH-K2044] gi|330008216|ref|ZP_08306186.1| DNA mismatch repair protein MutS [Klebsiella sp. MS 92-3] gi|172052439|sp|A6TD24|MUTS_KLEP7 RecName: Full=DNA mismatch repair protein mutS gi|150956465|gb|ABR78495.1| DNA mismatch repair protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548530|dbj|BAH64881.1| DNA mismatch repair protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328535210|gb|EGF61708.1| DNA mismatch repair protein MutS [Klebsiella sp. MS 92-3] Length = 853 Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust. Identities = 307/889 (34%), Positives = 488/889 (54%), Gaps = 51/889 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +NL + TPMM+QY+++K+ +PD L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 DNLDAHTPMMQQYLKLKAQHPDILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPHHAVENYLAKLVNQGESVAICEQIGDPAT-----TKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAE-SSLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y+K TQ + P I E Q ++ +D+A R NLEI + L+G + + Sbjct: 231 PRGLCAAGCLLQYVKDTQRTSLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGTDNT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I + +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTAVLVERQQTIGALQER---YTELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R L+RL + P+D+A +R ++ + +L L + + ++ EK+ + + L + Sbjct: 348 LERILARLALRTARPRDLARMRHALQQ-LPLLRELLADVDSQPVQKLREKMGEFTE-LRE 405 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + D P RDGG + G LDE R+L D + + L+++ E + LK+ Sbjct: 406 LLERAVIDAPPVLVRDGGVIAPGYSEELDEWRALADGATDYLDKLEIRERERLGLDTLKV 465 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + Sbjct: 466 GYNAVHGYYIQISRGQSHL------APIHYVRRQTLKNAERYIIPELKEYEDKVLTSKGK 519 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E + ++ L + ++ L ++ +A +D+ + LA A+ NYC P + Sbjct: 520 ALALEKQLYDELFDLLLPHLADLQTSASALAELDVLVNLAERAETLNYCCPTFSDKPGIR 579 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + +GRHP+VE+ LK+ PFIAN L+ ++ ++TGPNMGGKST++RQ ALI Sbjct: 580 ISEGRHPVVEQVLKE----PFIANPLQLAPQR-----RMLIITGPNMGGKSTYMRQTALI 630 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V Sbjct: 631 ALLAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEHSLV 690 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L Sbjct: 691 LMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH---NQKDM 850 + + I F+H V G A SYG+ V LAG+P VI RA L+ E + + Q D Sbjct: 751 EHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESISPNAAATQVD- 809 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 T+ S + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 810 -------GTQMSLLAAPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|73748908|ref|YP_308147.1| DNA mismatch repair protein MutS [Dehalococcoides sp. CBDB1] gi|115299207|sp|Q3ZYA0|MUTS_DEHSC RecName: Full=DNA mismatch repair protein mutS gi|73660624|emb|CAI83231.1| DNA mismatch repair protein MutS [Dehalococcoides sp. CBDB1] Length = 858 Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust. Identities = 315/886 (35%), Positives = 507/886 (57%), Gaps = 45/886 (5%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 ++++TP+ +QY++IK P+++VF+R+GDFYE F +DA +A+R L I LT R G + Sbjct: 1 MENTTPLRKQYLDIKKNYPEAIVFFRLGDFYETFEEDARIAARELEIVLTSREMGKGLKV 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 P+ G+P H ++Y+ +LI G+++AICEQ+ P E K LV+R V RLVTPGT+ E Sbjct: 61 PLAGIPYHALDNYLSRLINKGYKVAICEQVTKPGE-----TKGLVQRQVTRLVTPGTVVE 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 LL +N+L+++ +A+ DIST F + +N L ++I R+ P EII Sbjct: 116 PNLLQTKQNNFLLSLYLTEDSCGLAFADISTSEFGCTQTNISELEAEISRLSPAEII--- 172 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ-VEKTAA 260 L + +L L +F+ I+ R+ ++ + +G + + +AA Sbjct: 173 --LPKNQSLNLPIHLKATISKLDGYYFEADIARERLLRHFECQNLSAYGCENMPLAISAA 230 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTLSG-SREQSLLK 316 A ++Y+++TQ K ++ ER + +T + +DS SNLEI R+ G S + SLL Sbjct: 231 GALLNYLEETQ---KSSLKQLERLSVYTTADYMQMDSHTLSNLEIFRSSGGNSLKGSLLG 287 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D + T GGRL + + PL + I RL ++++F + + + K L D+ R Sbjct: 288 ILDQTKTAMGGRLLRKFLGQPLLKQSDIEKRLSAVDYFFEESLARTSLAKSLGQIADMER 347 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 +R++ P+++ +++ + + I F P L + LK LP+ L+ ++ Sbjct: 348 MANRIRQKTILPRELISLKNSLETVSAIHRQFGLMP-PPRLAYFLNGLKPLPEMLD-IIN 405 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 ++DD P+ DG +R G D +D+ SL ++ ++ ++ + E T IK+LK+ +N Sbjct: 406 KTITDDPPSTLGDGKVIRAGFDPEMDKLCSLAGDARTFLSQMETRERERTGIKSLKLGYN 465 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+IE+++++ + + FI +QT+ N RF T EL + EN I NA L Sbjct: 466 RVFGYYIEISNANLGDVPPE------FIRKQTLVNAERFITPELKEYENLILNAKERLLE 519 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E +E + N + +L + +A +D+ A A +A +Y RP+ ++ Sbjct: 520 METGLYEQVLNQLGGFYSALLANATALAALDVLSAFAEVAVRNSYVRPVFHPENRLDIRK 579 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE+ L S F+AND LS + ++ +LTGPNM GKST+L+Q ALIV+M Sbjct: 580 GRHPMVEQGLGYGS---FVANDISLSAED----CQIIILTGPNMAGKSTYLKQTALIVLM 632 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+GSYVPA A + + D++F+R+G+ ++L++G+STFMVEM+ETASILN AT++S +ILD Sbjct: 633 AQIGSYVPAETAELCLTDRIFTRIGAREDLSAGQSTFMVEMVETASILNTATSRSLLILD 692 Query: 737 EIGRGTATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 EIGRGT+T DGL+IA A +EY+H + + L ATH+HEL +L+ L R N + VS+ Sbjct: 693 EIGRGTSTYDGLAIAQAVVEYIHSQPSLTAKTLFATHYHELVELASYLPRVKNYNIAVSE 752 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 ++FLHK++PG D SYGI V KLAGLP VI RAY++L E Sbjct: 753 DRGEVVFLHKIVPGGVDKSYGIHVAKLAGLPKWVIKRAYEVLTELENPAKKQ-------- 804 Query: 855 PEIQTKESKNNLSKNDKLFV--EKIKCLNLDEMSPLTALKTLYAVK 898 P+ +T +S+ L + V E+IK L ++ ++PL AL LY +K Sbjct: 805 PKSRTCQSQLQLPMTGQTSVLEEEIKELEIESLTPLAALNKLYELK 850 >gi|218290139|ref|ZP_03494301.1| DNA mismatch repair protein MutS [Alicyclobacillus acidocaldarius LAA1] gi|218239848|gb|EED07037.1| DNA mismatch repair protein MutS [Alicyclobacillus acidocaldarius LAA1] Length = 867 Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust. Identities = 305/820 (37%), Positives = 453/820 (55%), Gaps = 35/820 (4%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S TPMMRQY EIKS D+L+ +R+GDFYELFF+DA++AS+ L ITLT R +PM Sbjct: 2 SLTPMMRQYREIKSKLDDTLLMFRLGDFYELFFEDAVIASQALDITLTGRDAGEAGRVPM 61 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVP H + Y+++LI+ G R+AIC+Q+E P + K LVRR +VR+VTPGT ++ Sbjct: 62 CGVPHHALDGYLERLIEQGFRVAICDQVEDP-----KAAKGLVRREIVRIVTPGTAVTEE 116 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 +D+ YL A+A E +A +D+ G + + + + R PREI+ + Sbjct: 117 ----SDARYLAALAFQGDEVGLALVDVGAGDVWFGAGSAEDMRDHVARFRPREILLEGAQ 172 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAA 262 + + G + P D + +Y ++ + G + +A Sbjct: 173 EFPGWLEEIVNRHGAIVTRVPAPSGDAFLM------HYGASSPEALGLTPGSAALSACNM 226 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDYS 321 A Y++ TQM + P +++ +LE++ SG R SL I + Sbjct: 227 AFQYLRDTQMAALRHLAPPRPLLEPGRMWLSERTVEHLELVPMGSGRERRTSLYDVIRET 286 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +T AG RL + PL D I RLD++ + +L I++ LK D+ R L++ Sbjct: 287 VTAAGSRLLRTWMLRPLVDRGAIEERLDAVTALADDLLLRAEIRESLKGMHDLSRLLAKC 346 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 IGR P+D+ + I G ++L L D P V L + L + ++ L D Sbjct: 347 SIGRATPRDLLALAHAIEKGQAAISL-LPIDGPSLFGRLVCGLPDF-RPLAEHIARELVD 404 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 D P +GG RDG D +D RSL+ +R + + + E T IK+LKI +N GY Sbjct: 405 DPPASAAEGGIFRDGVDPEIDRLRSLQSDGRRWLREFEARERERTGIKSLKIGYNKVFGY 464 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IEV+ ++ S++ D E K QT++ RFT EL E + A + +E Sbjct: 465 YIEVSKANLSLVPADYERK------QTLAAGERFTHPELKAREADMLTAAERVVELERAR 518 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 FE + + EQ+ L ++V+ ID+ LA LA ++ Y RP + + +++GRHP+ Sbjct: 519 FESWVHRVREQASELQRFAEVVNTIDVLAGLAELAVKRGYVRPEVTDDVGIEIREGRHPV 578 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE +L + F+ ND L+ P+ + LLTGPNMGGKST++RQ ALI I+AQMGS Sbjct: 579 VEASLGSE----FVPNDLVLT-PD----APIILLTGPNMGGKSTYMRQAALIAILAQMGS 629 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 YVPA A IG+VD++F+R+G++D+L+ G+STFMVEM E A IL +A+ +S V+LDEIGRG Sbjct: 630 YVPARSARIGLVDRVFTRIGASDDLSRGQSTFMVEMTELAEILREASGRSLVLLDEIGRG 689 Query: 742 TATLDGLSIAWATIEYLHE-TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 T+T DGLSIA A +E L E +R L ATH+HEL S+ N ++ V +++ GI Sbjct: 690 TSTYDGLSIAEAVLEDLAERRDRPLTLFATHYHELISFSERFSCVRNQSMAVEETDTGIR 749 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 FLH V+ +D SYGIQV +LAGLP+ VI RA + L+ E Sbjct: 750 FLHTVVMRPSDRSYGIQVARLAGLPDRVIRRAMEFLEARE 789 >gi|112361944|gb|ABI15929.1| MutS [Klebsiella pneumoniae] Length = 853 Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust. Identities = 307/889 (34%), Positives = 488/889 (54%), Gaps = 51/889 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +NL + TPMM+QY+++K+ +PD L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 DNLDAHTPMMQQYLKLKAQHPDILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPHHAVENYLAKLVNQGESVAICEQIGDPAT-----TKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAE-SSLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y+K TQ + P I E Q ++ +D+A R NLEI + L+G + + Sbjct: 231 PRGLCAAGCLLQYVKDTQRTSLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGTDNT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I + +Q +L+ D Sbjct: 291 LASVLDSTVTPMGSRMLKRWLHMPVRDTAVLVERQQTIGALQER---YTELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R L+RL + P+D+A +R ++ + +L L + + ++ EK+ + + L + Sbjct: 348 LERILARLALRTARPRDLARMRHALQQ-LPLLRELLADVDSQPVQKLREKMGEFTE-LRE 405 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + D P RDGG + G LDE R+L D + + L+++ E + LK+ Sbjct: 406 LLERAVIDAPPVLVRDGGVIAPGYSEELDEWRALADGATDYLDKLEIRERERLGLDTLKV 465 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + Sbjct: 466 GYNAVHGYYIQISRGQSHL------APIHYVRRQTLKNAERYIIPELKEYEDKVLTSKGK 519 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E + ++ L + ++ L ++ +A +D+ + LA A+ NYC P + Sbjct: 520 ALALEKQLYDELFDLLLPHLADLQTSASALAELDVLVNLAERAETLNYCCPTFSDKPGIR 579 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + +GRHP+VE+ LK+ PFIAN L+ ++ ++TGPNMGGKST++RQ ALI Sbjct: 580 ISEGRHPVVEQVLKE----PFIANPLQLAPQR-----RMLIITGPNMGGKSTYMRQTALI 630 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V Sbjct: 631 ALLAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEHSLV 690 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L Sbjct: 691 LMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH---NQKDM 850 + + I F+H V G A SYG+ V LAG+P VI RA L+ E + + Q D Sbjct: 751 EHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESISPNAAATQVD- 809 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 T+ S + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 810 -------GTQMSLLAAPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|290511067|ref|ZP_06550436.1| DNA mismatch repair protein MutS [Klebsiella sp. 1_1_55] gi|289776060|gb|EFD84059.1| DNA mismatch repair protein MutS [Klebsiella sp. 1_1_55] Length = 853 Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust. Identities = 307/889 (34%), Positives = 488/889 (54%), Gaps = 51/889 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +NL + TPMM+QY+++K+ +PD L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 DNLDAHTPMMQQYLKLKAQHPDILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPHHAVENYLAKLVNQGESVAICEQIGDPAT-----TKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAE-SSLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y+K TQ + P I E Q ++ +D+A R NLEI + L+G + + Sbjct: 231 PRGLCAAGCLLQYVKDTQRTSLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGTDNT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I + +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTAVLVERQQTIGALQER---YTELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R L+RL + P+D+A +R ++ + +L L + + ++ EK+ + + L + Sbjct: 348 LERILARLALRTARPRDLARMRHALQQ-LPLLRELLADVDRQPVQKLREKMGEFSE-LRE 405 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + D P RDGG + G LDE R+L D + + L+++ E + LK+ Sbjct: 406 LLERAVIDAPPVLVRDGGVIAPGYSEELDEWRALADGATDYLDKLEIRERERLGLDTLKV 465 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + Sbjct: 466 GYNAVHGYYIQISRGQSHL------APIHYVRRQTLKNAERYIIPELKEYEDKVLTSKGK 519 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E + ++ L + ++ L ++ +A +D+ + LA A+ NYC P + Sbjct: 520 ALALEKQLYDELFDLLLPHLADLQTSASALAELDVLVNLAERAETLNYCCPTFSDKPGIR 579 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + +GRHP+VE+ LK+ PFIAN L+ ++ ++TGPNMGGKST++RQ ALI Sbjct: 580 ISEGRHPVVEQVLKE----PFIANPLQLAPQR-----RMLIITGPNMGGKSTYMRQTALI 630 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V Sbjct: 631 ALLAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEHSLV 690 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L Sbjct: 691 LMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH---NQKDM 850 + + I F+H V G A SYG+ V LAG+P VI RA L+ E + + Q D Sbjct: 751 EHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESISPNAAATQVD- 809 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 T+ S + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 810 -------GTQMSLLAAPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|217964450|ref|YP_002350128.1| DNA mismatch repair protein MutS [Listeria monocytogenes HCC23] gi|254766631|sp|B8DFS4|MUTS_LISMH RecName: Full=DNA mismatch repair protein mutS gi|217333720|gb|ACK39514.1| DNA mismatch repair protein MutS [Listeria monocytogenes HCC23] gi|307570985|emb|CAR84164.1| DNA mismatch repair protein [Listeria monocytogenes L99] Length = 860 Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust. Identities = 315/894 (35%), Positives = 499/894 (55%), Gaps = 61/894 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+EIK D+ +F+R+GDFYE+FF+DAL AS+ L ITLT R + IPMCG Sbjct: 5 TPMIKQYLEIKDKYQDAFLFFRLGDFYEMFFEDALNASQILEITLTGREGGTKEKIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A+ YI LI+ G+++AICEQ+E P + K +V+R VV+L++PGT+ +++ L Sbjct: 65 VPYHSASGYIDTLIEKGYKVAICEQVEDP-----KTTKGMVKREVVQLISPGTVMDERGL 119 Query: 146 SPTDSNYLMAVARIR-TEWAIAWIDISTGIFK--ISTSNHDRLISDIMRIDPREIIFSEK 202 ++NY+ ++ E+ A+ D+STG K + ++ DRLI+++ + RE+I S Sbjct: 120 KAKENNYIASLYCYEGKEYGFAYSDLSTGELKSTVIEASEDRLINELTTLSTRELIVSAS 179 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 E E L +V Q + F S+ E N V S S EK A Sbjct: 180 EK---------EVLSDVMKEQLGLTF--SVHEEDTIPLENEKLVTRHMSLS--EKRAIGK 226 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDYS 321 + Y+K+TQ + + + + + +D ++ NLE+ ++ G R+ +LL +D + Sbjct: 227 LLHYLKETQKRDLGHLQQAVHYETSNYMKMDYYSKRNLELAESIRGKGRQGTLLWLLDNT 286 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSI-----NFFIQNPILINPIQKILKSSPDVPR 376 T GGR+ + I PL D KI R + + NFF + ++ N LK+ D+ R Sbjct: 287 QTAMGGRMLKQWIDRPLIDRNKIIERQNDVSELMANFFERLELVEN-----LKNVYDLER 341 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R+ G +D+ +R+ + I L + + EL ++ ++L + LE+ Sbjct: 342 LAGRVAYGNVNARDLIQLRNSLYQIPRIRATLLSMNSKSLTELANQLDPCEELTEKLEEA 401 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + D P R+GG ++DG ++ LD R K IA L+ K E T IK +K+ Sbjct: 402 IM----DSAPISIREGGIIKDGYNSQLDTYRDASRNGKTWIAELERKERELTGIKTMKVG 457 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N GY+IEVT ++ +L + R+ +QT++N R+ T EL + E I +A + Sbjct: 458 FNRVFGYYIEVTRANTHLL-----PEGRYERKQTLTNAERYITPELKEKEKLILDAEEKS 512 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E + F + + + E L ++ ++ ID + A ++++ ++ RP + + V Sbjct: 513 MELEYQLFTEVRELVKDYIERLQKLAKSVSEIDCLQSFADISEKNHFIRPTLSEDGSLHV 572 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 K GRHP+VEK + QS ++ANDCDL D+N ++ L+TGPNM GKST++RQ AL Sbjct: 573 KQGRHPVVEKVMGAQS---YVANDCDL----DRNR-EILLITGPNMSGKSTYMRQVALTA 624 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 I AQ+G +VPA A + I D++F+R+G+AD+L +G+STFMVEM+E + + AT S ++ Sbjct: 625 ICAQVGCFVPAEEATLPIFDQIFTRIGAADDLIAGQSTFMVEMLEARNAIVHATKDSLIL 684 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 DEIGRGTAT DG+++A A IEY+HE + L +TH+HELTDL K L N + + Sbjct: 685 FDEIGRGTATYDGMALAQAIIEYIHENVHAKTLFSTHYHELTDLEKELHGLQNIHVSAVE 744 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE----KLYHHNQKDM 850 N ++FLHK+ G AD SYGI V +LA LP ++I RA IL+ E K+ N K Sbjct: 745 ENGKVVFLHKIKEGPADKSYGIHVAELAELPKSLIERASRILEQLENDDKKIVITNDKQP 804 Query: 851 RLYYPEIQ-----TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + E+Q + K SK KL E I +N+ +M+P+ A+ LY +++ Sbjct: 805 EEIHEEVQLSMFPVEPEKKASSKETKLLKE-IASMNIMQMTPMDAMNKLYELQS 857 >gi|167911642|ref|ZP_02498733.1| DNA mismatch repair protein [Burkholderia pseudomallei 112] Length = 894 Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust. Identities = 310/896 (34%), Positives = 467/896 (52%), Gaps = 40/896 (4%) Query: 13 SEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTK 72 S+Q E + TPMM+QY+ IKS +PD+LVFYRMGDFYELFF+DA A+R L +TLT+ Sbjct: 11 SKQQLTEAAFSNHTPMMQQYLRIKSEHPDTLVFYRMGDFYELFFEDAEKAARLLDLTLTQ 70 Query: 73 RGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVR 132 RG G I M GVP H Y+ KL+K G AICEQI P +K V R VVR Sbjct: 71 RGASAGTPIKMAGVPHHAVEQYLAKLVKFGESAAICEQIGDPAT-----SKGPVERKVVR 125 Query: 133 LVTPGTLTEDQLLSPTDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTSNHDRLI 186 +VTPGTLT+ LLS +L+A+ + + +AW+++++G +++ D+L Sbjct: 126 VVTPGTLTDAALLSDKSDVFLLALCVGHNKRGVASNIGLAWLNLASGALRLAELAPDQLG 185 Query: 187 SDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTV 246 + + RI P EI+ ++ + +S+ +G + P FD + R+ D + ++ Sbjct: 186 AALERIRPAEILAADGTI-----ESVPAGMGAITRV-PAWHFDIASGTQRLCDQLEVASL 239 Query: 247 DTFGSFSQVEKTAAAAAIS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT 305 D FG+ + AA A+ Y TQ + + E+ + +D + R NLE+ T Sbjct: 240 DGFGAQALTSANGAAGALLIYAAATQGQQLRHVRSLKVENESEYIGLDPSTRRNLELTET 299 Query: 306 LSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP--ILINP 363 L G+ +L +D T G RL + P S R +I + P ++ Sbjct: 300 LRGTESPTLYSLLDTCCTAMGSRLLRHWLHHPPRASVAAQARHQAIGALLDAPPNAGLDS 359 Query: 364 IQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEK 423 ++ L+ DV R RL + P+D++ +RD + + + G +E Sbjct: 360 LRSALRQIADVERITGRLALLSARPRDLSSLRDTFAALPALRERVAEIASNAAALGRLEA 419 Query: 424 LKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 + P L+ ++ + RDGG + G DA LDE R + + + + L+ + Sbjct: 420 ALEPPPGCLDLLTRAIAAEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLETRER 479 Query: 484 EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDL 543 T I NL++++N G++IEVT + D + RQT+ N R+ T EL Sbjct: 480 ARTGISNLRVEYNKVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTF 533 Query: 544 ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCR 603 E++ +A AL E ++ + A++ E + +A +D+ A A A+ ++ Sbjct: 534 EDKALSAQERALARERALYDGVLQALLPHIEGCQRVASGLAELDLLAAFAERARTLDWVA 593 Query: 604 PIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 P + + GRHP+VE ++Q FIANDC L+ KL L+TGPNMGGK Sbjct: 594 PEFTDEIGIEIDQGRHPVVEAQVEQ-----FIANDCALNPER-----KLLLITGPNMGGK 643 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 STF+RQ ALI +MA +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+I Sbjct: 644 STFMRQTALIALMAYVGSYVPAKAARFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAI 703 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLK 783 LN AT S V++DEIGRGT+T DGL++AWA +L NRC L ATH+ ELT L Sbjct: 704 LNDATPHSLVLMDEIGRGTSTFDGLALAWAIARHLLSHNRCYTLFATHYFELTQLPAEFP 763 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY 843 + N L + GI+FLH V G A+ SYG+QV +LAG+P VI A L+ E+ Sbjct: 764 QAANVHLSAVEHGHGIVFLHAVEEGPANQSYGLQVAQLAGVPAPVIRAARKHLEHLEQQS 823 Query: 844 HHN---QKDMRLYYPEIQTKE-SKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 Q D+ P + E ++ + +E++ L+ D++ P AL LY Sbjct: 824 AAQATPQLDLFAAPPVVDEPECNEPPAAATPHPALERLLELDPDDLKPRDALDLLY 879 >gi|110803440|ref|YP_698493.1| DNA mismatch repair protein MutS [Clostridium perfringens SM101] gi|123047422|sp|Q0STR4|MUTS_CLOPS RecName: Full=DNA mismatch repair protein mutS gi|110683941|gb|ABG87311.1| DNA mismatch repair protein MutS [Clostridium perfringens SM101] Length = 910 Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust. Identities = 297/836 (35%), Positives = 479/836 (57%), Gaps = 36/836 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY EIK D ++F+R+GDFYE+FF+DA A+R L + LT R L K PMCG Sbjct: 4 TPMMRQYFEIKENYKDCILFFRLGDFYEMFFEDAETAARELELVLTGRDCGLEKRAPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H +N YI +L+ G+++AICEQ+E P AK +V+R+V++++TPGT T+ + Sbjct: 64 IPFHASNSYIGRLVAKGYKVAICEQVEDPKVAK-----GIVKRDVIKVITPGTYTDSSFV 118 Query: 146 SPTDSNYLMAVARI--RTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREIIFSE 201 T +NY+M + R ++A DISTG F + ++ ++ +I + +P+EII + Sbjct: 119 EETKNNYIMTIYSDLERNRCSLAITDISTGDFLATEGELEKGVILDEISKFNPKEIILLD 178 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 L K + T + +P +F E + + N + S S + K ++ Sbjct: 179 S-LDQELIKDITLTTPALISRKPIEYF-----EEKFEEVLNSQFGEKSNSLSLMIKKSSN 232 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 A + YI TQ ++ I E + + ID ++R NLE+ L S++ SLL +D Sbjct: 233 ALVKYILDTQKISLTNINDIEVYSLVDFMTIDLSSRRNLELTENLREKSKKGSLLWVLDK 292 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G R+ I PL + KI RL+++ + L + +++ L D+ R L + Sbjct: 293 TETSMGSRMLRRWIEEPLVNKEKITLRLNAVEELFNDLSLNDSLKEALHDIYDIERILGK 352 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 + KD+ ++ I N+ + + L + ++ L+ + + LEK++ Sbjct: 353 ISNKNANAKDLIALKTSIGKIPNVKGIIENCTSSLLKNYHHNLDDLRDIYELLEKSIK-- 410 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 +D +DG ++DG + +DE R + K I+SL+ + E T IK+LK+ N Sbjct: 411 --EDPSLTLKDGDLIKDGFNGEIDELRLAKTNGKDWISSLENREREFTGIKSLKVGFNKV 468 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IE++ ++ S + + R+I +QT++N RF T EL ++E ++ A+ +E Sbjct: 469 FGYYIEISKANYSSI-----PEGRYIRKQTLANAERFITPELKEIEEKLLGASEKLCSLE 523 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F + N + + L +++IA +D LA +A E ++ +P I+ +++GR Sbjct: 524 YDIFLDIRNEVENHIDRLKTTAKIIAELDCISNLAFVALENDFIKPEINEDGETKIENGR 583 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VEK + + FI ND + +K+ +L ++TGPNM GKST++RQ A+I +M Q Sbjct: 584 HPVVEKVIPKGE---FIPNDTII----NKDDNQLLIITGPNMAGKSTYMRQVAIITLMCQ 636 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPAS A+I +VDK+F+R+G++D+LA G+STFMVEM E ++IL AT S V+LDE+ Sbjct: 637 IGSFVPASKANISVVDKIFTRIGASDDLAGGKSTFMVEMWEVSNILKNATENSLVLLDEV 696 Query: 739 GRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 GRGT+T DGLSIAW+ IEY+ + RC+ L ATH+HELT L + N ++ V + + Sbjct: 697 GRGTSTYDGLSIAWSVIEYICKNKNLRCKTLFATHYHELTKLEGEIHGVRNYSVAVKEVD 756 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 IIFL K+I G AD SYGI+V KLAG+P+ VI+RA +IL+T E + D+ L Sbjct: 757 NNIIFLRKIIEGGADQSYGIEVAKLAGIPDEVINRAKEILETLEMESSKDNLDLAL 812 >gi|330831306|ref|YP_004394258.1| Msh-like protein [Aeromonas veronii B565] gi|328806442|gb|AEB51641.1| Msh-like protein [Aeromonas veronii B565] Length = 863 Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust. Identities = 306/885 (34%), Positives = 482/885 (54%), Gaps = 49/885 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 NL + TPMM+QY+ +K+ NP+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG+ G Sbjct: 18 NLSAHTPMMQQYLGLKAENPEILLFYRMGDFYELFYDDARKASQLLDISLTKRGQSAGSP 77 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM GVP H Y+ KL+++G AICEQ+ P +K V R V+R++TPGT++ Sbjct: 78 IPMAGVPYHAIEGYLAKLVQLGESAAICEQVGDPAT-----SKGPVERKVIRIITPGTVS 132 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIF 199 ++ LLS N + AV + +DI +G F I+ + L++++ R +P E+++ Sbjct: 133 DEALLSERQDNLIAAVYHDGRRFGYGTMDIGSGRFFINQFEKEETLLAELQRTNPAELLY 192 Query: 200 SE--KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVE 256 E + L H E + +P F+ + + + + FG S+ Sbjct: 193 PESFEFLHHIEGRRGLRR-------RPEWEFELGTARKLLCQQFGTQDLVGFGVDKSETA 245 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 AA + Y+K TQ P I E + +D+A R NLE+ + L+G E +L + Sbjct: 246 LCAAGCLMQYVKDTQRTALPHIRNVRLEQPDHAVIMDAATRRNLELTQNLAGGYENTLAE 305 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D + T G RL I P+ D + R +I I+ L + + +L+ DV R Sbjct: 306 VLDRTATPMGSRLLKRWIHQPIRDRVILKGRQSTIKELIEQN-LYDELGSLLRQVGDVER 364 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 L+RL + P+D+ +R + + L L ++ E ++ E+ P+ L+ L Sbjct: 365 VLARLALRSARPRDLTRLRQAF-AQLPELQRLLADNEHEAVQQLAERASTFPELLD-LLE 422 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + + P RDGG +RDG + LDE R L + + +A ++ + T I LK+ +N Sbjct: 423 RAVMEVPPVLIRDGGVIRDGFNQELDELRDLANGATASLARIEEREKLLTGINTLKVGYN 482 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 G++IEV+ +++ ++ +I RQT+ N R+ EL E+++ A + AL Sbjct: 483 KVHGFYIEVSRANSHLVPA------HYIRRQTLKNNERYIIDELKKYEDKVLTAQSQALA 536 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E +E L +A++ L +++ +A +D+ LA A+ +Y P + + I++ Sbjct: 537 LEKRLYEELLDALLPHLGDLQDSAAALAELDVLANLAERAETLDYRCPTLIDEDQIIIEA 596 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE+ + + PFIAN L + ++ ++TGPNMGGKST++RQ ALIV++ Sbjct: 597 GRHPVVEQVM----TDPFIANPIRL-----ERERRMLIITGPNMGGKSTYMRQTALIVLL 647 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A +G++VPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+ILN AT +S V++D Sbjct: 648 AHIGAFVPADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILNNATARSLVLMD 707 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DGLS+AWA E L L ATH+ ELT L + + N L + Sbjct: 708 EIGRGTSTYDGLSLAWACAEQLASKIGAYTLFATHYFELTRLPELMSGLANVHLDAVEHG 767 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 + I F+H V G A SYG+QV LAG+P +VI +A H ++ P Sbjct: 768 DTIAFMHAVQEGAASRSYGLQVAALAGVPKSVIQQA-----------RHKLHELESATP- 815 Query: 857 IQTKESKN---NLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + ES+ L+ VE+++ L DE++P AL LY +K Sbjct: 816 VAAGESRPTPVTLAPQIHPVVEELEALCPDELTPRQALDLLYRLK 860 >gi|327394972|dbj|BAK12394.1| DNA mismatch repair protein MutS [Pantoea ananatis AJ13355] Length = 853 Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust. Identities = 311/894 (34%), Positives = 493/894 (55%), Gaps = 65/894 (7%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L + TPMM+QY+ +K+ +PD L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 8 DLSTHTPMMQQYLRLKAEHPDILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEP 67 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM GVP H +Y+ +L+++G +AICEQI P +K V R VVR+VTPGT++ Sbjct: 68 IPMAGVPHHAVENYLARLVQLGESVAICEQIGDPAL-----SKGPVERKVVRIVTPGTIS 122 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIF 199 ++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E+++ Sbjct: 123 DEALLQERQDNLLAAIVQGARGYGYATLDISSGRFRLSEPADQETMAAELQRTNPAELLY 182 Query: 200 SEKELSHA---EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 E + A + + L +P F+ + ++ + ++ FG + + Sbjct: 183 PEDFAAMALIDQRRGLRR--------RPLWEFEIDTARQQLNMQFGTRDLNGFGVEQAHL 234 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA + Y+K TQ + P I E Q ++ +D+A R NLEI + L+G E +L Sbjct: 235 GLRAAGCLLQYVKDTQRTSLPHIRSLSMERQQDSIIMDAATRRNLEITQNLAGGTENTLA 294 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D ++T G R+ + PL DS+ I R SI P L + +Q +L+ D+ Sbjct: 295 AVLDKTVTPMGSRMLKRWLHMPLRDSSIIAKRQASIAEL--QP-LSDVLQPVLRQVGDLE 351 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEKLKKLPQSLEK 433 R L+RL + P+D+A +R + + +L + P+ LR + + +L LE+ Sbjct: 352 RILARLALRTARPRDLARMRHAFQQLPELNDLLANAESPQLKTLRAQMGEFSELRTLLEQ 411 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + + P RDGG + G +A LDE R+L D + + L+++ E+ + +LK+ Sbjct: 412 AVV----ESPPVLIRDGGVIAPGYNAELDEWRALADGATDYLDRLEVREREKLGLDSLKV 467 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GY+I+V+ + + ++ RQT+ N R+ EL + E+++ + Sbjct: 468 GFNGVHGYYIQVSRGQSH------QVPIHYVRRQTLKNAERYIIPELKEYEDKVLTSKGK 521 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E +E L + ++ E+L ++ +A +D+ LA A NYCRP + + Sbjct: 522 ALALEKSLYEGLFDQLLPHLEALQLSAAALAELDVLSNLAERAWTLNYCRPTLHDKPGIK 581 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + GRHP+VE+ LK+ PFIAN L+ ++ ++TGPNMGGKST++RQ ALI Sbjct: 582 ITAGRHPVVEQVLKE----PFIANPLSLAPQR-----RMLIITGPNMGGKSTYMRQAALI 632 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +GS+VPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V Sbjct: 633 ALMAWIGSFVPAEEVVIGPLDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLV 692 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + L+ N L Sbjct: 693 LMDEIGRGTSTYDGLSLAWACAENLANRIKAMTLFATHYFELTTLPEKLEGVVNVHLDAV 752 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 + + I F+H V G A SYG+ V LAG+P VI RA + LK E Sbjct: 753 EHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARNKLKELET------------ 800 Query: 854 YPEIQTKESKNN--------LSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + ++ + +N L + VE ++ L+ D ++P AL +Y +K+ Sbjct: 801 ---VSSQSATSNIDGSQLPLLVEETSPAVEALEALDPDTLTPRQALDWIYRLKS 851 >gi|288933852|ref|YP_003437911.1| DNA mismatch repair protein MutS [Klebsiella variicola At-22] gi|288888581|gb|ADC56899.1| DNA mismatch repair protein MutS [Klebsiella variicola At-22] Length = 853 Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust. Identities = 307/889 (34%), Positives = 488/889 (54%), Gaps = 51/889 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +NL + TPMM+QY+++K+ +PD L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 DNLDAHTPMMQQYLKLKAQHPDILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPHHAVENYLAKLVNQGESVAICEQIGDPAT-----TKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAE-SSLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y+K TQ + P I E Q ++ +D+A R NLEI + L+G + + Sbjct: 231 PRGLCAAGCLLQYVKDTQRTSLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGTDNT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I + +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTAVLVERQQTIGALQER---YTELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R L+RL + P+D+A +R ++ + +L L + + ++ EK+ + + L + Sbjct: 348 LERILARLALRTARPRDLARMRHALQQ-LPLLRELLADVDRQPVQKLREKMGEFTE-LRE 405 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + D P RDGG + G LDE R+L D + + L+++ E + LK+ Sbjct: 406 LLERAVIDAPPVLVRDGGVIAPGYSEELDEWRALADGATDYLDKLEIRERERLGLDTLKV 465 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + Sbjct: 466 GYNAVHGYYIQISRGQSHL------APIHYVRRQTLKNAERYIIPELKEYEDKVLTSKGK 519 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E + ++ L + ++ L ++ +A +D+ + LA A+ NYC P + Sbjct: 520 ALALEKQLYDELFDLLLPHLADLQTSASALAELDVLVNLAERAETLNYCCPTFSDKPGIR 579 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + +GRHP+VE+ LK+ PFIAN L+ ++ ++TGPNMGGKST++RQ ALI Sbjct: 580 ISEGRHPVVEQVLKE----PFIANPLQLAPQR-----RMLIITGPNMGGKSTYMRQTALI 630 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V Sbjct: 631 ALLAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEHSLV 690 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L Sbjct: 691 LMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH---NQKDM 850 + + I F+H V G A SYG+ V LAG+P VI RA L+ E + + Q D Sbjct: 751 EHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESISPNAAATQVD- 809 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 T+ S + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 810 -------GTQMSLLAAPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|237812977|ref|YP_002897428.1| DNA mismatch repair protein MutS [Burkholderia pseudomallei MSHR346] gi|237505980|gb|ACQ98298.1| DNA mismatch repair protein MutS [Burkholderia pseudomallei MSHR346] Length = 894 Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust. Identities = 310/896 (34%), Positives = 467/896 (52%), Gaps = 40/896 (4%) Query: 13 SEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTK 72 S+Q E + TPMM+QY+ IKS +PD+LVFYRMGDFYELFF+DA A+R L +TLT+ Sbjct: 11 SKQQLTEAAFSNHTPMMQQYLRIKSEHPDTLVFYRMGDFYELFFEDAEKAARLLDLTLTQ 70 Query: 73 RGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVR 132 RG G I M GVP H Y+ KL+K G AICEQI P +K V R VVR Sbjct: 71 RGASAGTPIKMAGVPHHAVEQYLAKLVKFGESAAICEQIGDPAT-----SKGPVERKVVR 125 Query: 133 LVTPGTLTEDQLLSPTDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTSNHDRLI 186 +VTPGTLT+ LLS +L+A+ + + +AW+++++G +++ D+L Sbjct: 126 VVTPGTLTDAALLSDKSDVFLLALCVGHNKRGVASNIGLAWLNLASGALRLAELAPDQLG 185 Query: 187 SDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTV 246 + + RI P EI+ ++ + +S+ +G + P FD + R+ D + ++ Sbjct: 186 AALERIRPAEILAADGTI-----ESVPAGMGAITRV-PAWHFDIASGTQRLCDQLEVASL 239 Query: 247 DTFGSFSQVEKTAAAAAIS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT 305 D FG+ + AA A+ Y TQ + + E+ + +D + R NLE+ T Sbjct: 240 DGFGAQALTSANGAAGALLIYAAATQGQQLRHVRSLKVENESEYIGLDPSTRRNLELTET 299 Query: 306 LSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP--ILINP 363 L G+ +L +D T G RL + P S R +I + P ++ Sbjct: 300 LRGTESPTLYSLLDTCCTAMGSRLLRHWLHHPPRASVAAQARHQAIGALLDAPPNAGLDS 359 Query: 364 IQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEK 423 ++ L+ DV R RL + P+D++ +RD + + + G +E Sbjct: 360 LRSALRQIADVERITGRLALLSARPRDLSSLRDTFAALPALRERVAEIASNAAALGRLEA 419 Query: 424 LKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 + P L+ ++ + RDGG + G DA LDE R + + + + L+ + Sbjct: 420 ALEPPPGCLDLLTRAIAAEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLETRER 479 Query: 484 EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDL 543 T I NL++++N G++IEVT + D + RQT+ N R+ T EL Sbjct: 480 ARTGISNLRVEYNKVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTF 533 Query: 544 ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCR 603 E++ +A AL E ++ + A++ E + +A +D+ A A A+ ++ Sbjct: 534 EDKALSAQERALARERALYDGVLQALLPHIEGCQRVASGLAELDLLAAFAERARTLDWVA 593 Query: 604 PIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 P + + GRHP+VE ++Q FIANDC L+ + KL L+TGPNMGGK Sbjct: 594 PEFTDEIGIEIDQGRHPVVEAQVEQ-----FIANDCALN-----SERKLLLITGPNMGGK 643 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 STF+RQ ALI +MA +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+I Sbjct: 644 STFMRQTALIALMAYVGSYVPAKAARFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAI 703 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLK 783 LN AT S V++DEIGRGT+T DGL++AWA +L NRC L ATH+ ELT L Sbjct: 704 LNDATPHSLVLMDEIGRGTSTFDGLALAWAIARHLLSHNRCYTLFATHYFELTQLPAEFP 763 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY 843 + N L + GI+FLH V G A+ SYG+QV +LAG+P VI A L E+ Sbjct: 764 QAANVHLSAVEHGHGIVFLHAVEEGPANQSYGLQVAQLAGVPAPVIRAARKHLAHLEQQS 823 Query: 844 HHN---QKDMRLYYPEIQTKE-SKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 Q D+ P + E ++ + +E++ L+ D++ P AL LY Sbjct: 824 AAQATPQLDLFATPPVVDEPECNEPPAAATPHPALERLLELDPDDLKPRDALDLLY 879 >gi|309781250|ref|ZP_07675987.1| DNA mismatch repair protein MutS [Ralstonia sp. 5_7_47FAA] gi|308920071|gb|EFP65731.1| DNA mismatch repair protein MutS [Ralstonia sp. 5_7_47FAA] Length = 881 Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust. Identities = 321/900 (35%), Positives = 478/900 (53%), Gaps = 72/900 (8%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ +KS +PD+LVFYRMGDFYELFF+DA ASR L ITLT RG G I M G Sbjct: 22 TPMMQQYLRLKSGHPDTLVFYRMGDFYELFFEDAEKASRLLDITLTARGSSNGHPIRMAG 81 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H A Y+ KL+K+G +AICEQI P K V R VVR+VTPGTLT+ LL Sbjct: 82 IPFHAAEQYLAKLVKLGESVAICEQIGDPA-----ATKGPVERKVVRVVTPGTLTDAALL 136 Query: 146 SPTDSNYLMAVARIRTEWA------IAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 S +N+L+A+A + + +AW+++ G ++ + D+L ++ RI P E++ Sbjct: 137 SDKVNNHLLAIAHLPGKRGAAPLIGLAWLNLVGGELRVMECSPDQLDRELERIRPAEVLA 196 Query: 200 SEKELSHAEYKSLFETLGNVAVAQ---PNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 + L+ TL V VA+ P+ FD R+ + + ++ FG+ + Sbjct: 197 DDATLN---------TL-QVDVARTRLPDWHFDVEAGTRRLREQLGVASLVAFGAETLTA 246 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTL-----FI--DSAARSNLEILRTLSGS 309 AAA A+ T G R I T+ FI D+A R NLE+ TL G Sbjct: 247 ALAAAGALLNYAAA------TQGQSLRHVIGLTVEHESEFIGLDTATRRNLELTETLRGQ 300 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 +L +D T G RL + PL D R +I + + ++ L+ Sbjct: 301 ESPTLFSLLDTCATSMGSRLLRHWLHHPLRDRAVPQARQQAIEVLLGSDW--QTLRATLR 358 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKND---LPEELRGAVEKLKK 426 + DV R RL + P+D++ +RD + I ++D L EL A+ Sbjct: 359 TLSDVERITGRLALLSARPRDLSSLRDTLARLPEIREELPQSDAAPLLAELYAAL----T 414 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 LP+ L S + + RDGG + G DA LDE R + + + + L+ + E T Sbjct: 415 LPEDAHALLQSAVMAEPAAMVRDGGVIARGYDADLDELRDISENCGQFLVDLEARERERT 474 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 I NL++++N G++IEVT+ A+ + D + RQT+ N R+ T EL E++ Sbjct: 475 GIANLRVEYNRVHGFYIEVTNGQAAKVPDD------YRRRQTLKNAERYITPELKAFEDK 528 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 +A + AL E +E L ++ + +A D+ LA A ++ RP++ Sbjct: 529 ALSAQDRALSREKLLYEELLQKLLPHLAEFKRIAAALAQADVLATLAERAHALSWSRPML 588 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 ++ + RHP+VE+ ++Q F+ANDC L + + KL L+TGPNMGGKSTF Sbjct: 589 TDAPGIELTRARHPVVEQQVEQ-----FVANDCML-----QEARKLLLITGPNMGGKSTF 638 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ AL+V++A +G++VPA A IG +D++F+R+G+AD+LA GRSTFMVEM E A+IL++ Sbjct: 639 MRQTALVVLLAYVGAFVPAEAAVIGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILHR 698 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT S V++DEIGRGT+T DGL++AWA +L NR L ATH+ ELT L + + Sbjct: 699 ATPNSLVLMDEIGRGTSTFDGLALAWAIARHLLSHNRSHTLFATHYFELTQLPQEFAQAA 758 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN 846 N L + +GI+FLH V G A SYG+QV +LAG+P VI A L E+ H+ Sbjct: 759 NVHLSAVEHGDGIVFLHAVQEGPASQSYGLQVAQLAGVPQPVIRAARKRLAWLEQ---HS 815 Query: 847 -------QKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 Q D+ + + ++ D E + ++ D+M+P AL LY +KA Sbjct: 816 ADTGATPQLDLFALAADTPIDDENDDAEAPDSALTEALAGIDPDDMTPREALDALYRLKA 875 >gi|29840586|ref|NP_829692.1| DNA mismatch repair protein [Chlamydophila caviae GPIC] gi|33301360|sp|Q821V6|MUTS_CHLCV RecName: Full=DNA mismatch repair protein mutS gi|29834936|gb|AAP05570.1| DNA mismatch repair protein MutS [Chlamydophila caviae GPIC] Length = 826 Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust. Identities = 301/831 (36%), Positives = 466/831 (56%), Gaps = 40/831 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TPMM+Q+ + K +SL+ +RMGDFYE F+DDA+L S+ L I LT+R + IP Sbjct: 4 KKPTPMMKQWHQCKEQAGESLLLFRMGDFYEAFYDDAVLLSQNLDINLTQR-----QGIP 58 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKK-RGNKSLVRRNVVRLVTPGTLTE 141 M G+PV T N YI +L+ G ++AI EQIE EA+ +G + R + R VTPGTL Sbjct: 59 MSGIPVSTVNGYIDRLVSKGFKVAIAEQIE---EAQNNKGKSEPLARELQRFVTPGTLLS 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFS 200 LL +NY++++ R+ + + + +D STG F ++ N LI +I R+ P EI+ Sbjct: 116 SSLLPEKANNYIVSIYRVGSLFGFSCLDFSTGAFLLNEYDNMKDLIDEICRLAPTEILSC 175 Query: 201 EKELSHAEYKSLFETLGNVA-------VAQPNVFFDHSISESRIADYYNITTVDTFGSFS 253 +K YK FE + + + F+H + +++ ++N++++D FG Sbjct: 176 DKF-----YKKHFEIVEQIQQHLKLTLSTYSDWAFEHQFATQKLSSHFNVSSLDGFGLKG 230 Query: 254 QVEK-TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR-E 311 V AA A +SY++ ++ I P+ Q L ID+A++ NLE+L + + + Sbjct: 231 LVPAINAAGALLSYLQDKLLLPVEHISVPKTHGNQKHLLIDTASQVNLELLTPIHDPQGK 290 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 SLL ++ + T GGRL + +P D +I R D++ F + L ++ L Sbjct: 291 SSLLHVMERTCTPMGGRLLRNTLVNPFYDQKEILLRQDAVEFLLNRSELRKNLRSFLSQV 350 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSL 431 D+ R +++ PKDI ++RD + + ++I + LPE G L L Sbjct: 351 RDLERLTTKITTALAGPKDIGMLRDSLNASMHICEILSPLPLPEFFHGKFTLGLGLASLL 410 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 E ++ + LP DG D L R R+ SK + Q +T +K L Sbjct: 411 ELLSKALFGE-LPLRISDGNIFSDDHHPDLKRLRYTRENSKEWLWQYQDAIRTQTGVKKL 469 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 K+ ++ LGY+IEV+S A +L KD FI RQ+ + RFTT +L + ++ + N + Sbjct: 470 KVCYSQVLGYYIEVSSDLAPLLPKD------FIRRQSRLHAERFTTEKLQEFQDDMLNVS 523 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + +E + F+ L I+EQ +++ + SQVIA D ++LA LA E YCRPI+D S + Sbjct: 524 DKLQTLETQLFKDLCAQILEQRDAILSLSQVIADTDYILSLADLAAEYGYCRPIVDTSDS 583 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 + G HP+ + L + + FI ND + + + L+TGPNM GKST++RQ A Sbjct: 584 LSITGGMHPVAQTLLDRGT---FIPNDIKMHSARTR----MILITGPNMAGKSTYIRQIA 636 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 L++IMAQMGS++PA AHIG++DK+F+R+G+ DNL+ G STFMVEM ETA+IL+ AT++S Sbjct: 637 LLIIMAQMGSFIPARSAHIGMIDKIFTRIGAGDNLSKGMSTFMVEMAETANILHNATDRS 696 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYL--HETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 ++LDE+GRGT+T DGL+IA + +EYL E + + L ATH+ ELTDL N Sbjct: 697 LIVLDEVGRGTSTYDGLAIAQSVVEYLLFTEGKKAKTLFATHYKELTDLENHCPHVENFH 756 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 V ++ +FL++++ G + S+GI V KLAG P VISRA IL+ E Sbjct: 757 AGVRENGGHPVFLYEILKGHSQKSFGIHVAKLAGFPLCVISRAQQILRQLE 807 >gi|332881597|ref|ZP_08449246.1| DNA mismatch repair protein MutS [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680595|gb|EGJ53543.1| DNA mismatch repair protein MutS [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 902 Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust. Identities = 306/893 (34%), Positives = 497/893 (55%), Gaps = 52/893 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TPMM+Q+ ++K+ +PD+++ +R GDFYE + +DA++AS LGITLTKR G G+ + M Sbjct: 36 TPMMKQFYDLKAKHPDAIMLFRCGDFYETYCEDAVVASEILGITLTKRSNGGRNGEPVEM 95 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G P H + Y+ KLI+ G R+AIC+Q+E P + K+LV+R + LVTPG D Sbjct: 96 AGFPYHALDTYLPKLIRAGRRVAICDQLEDP-----KLTKTLVKRGITELVTPGVSMNDN 150 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 +LS ++N+L AV + +A++DISTG F + + + + P+E++F + Sbjct: 151 VLSYKENNFLAAVHFNKNVCGVAFLDISTGEFLTAEGTSEYVDKLLGNFSPKEVLFERGK 210 Query: 204 LSHAEYKSLFETLGNVAVA------QPNVFFDHSISESRIADYYNITTVDTFG-SFSQVE 256 ++LFE GN VF + S +E ++ ++ + + FG + Sbjct: 211 ------RNLFE--GNFGTKFFTFELDDWVFSERSATE-KLLKHFEVKNLKGFGIDHLKCG 261 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 A+ + Y++ TQ I R + + + +D NLE+L ++ SLL Sbjct: 262 IVASGVILQYLEMTQHSQIGHITSISRIEEERYVRLDKFTVRNLELLNSMVDG-GNSLLG 320 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 ID +IT G RL I PL D +N RLD +++F + P I L D+ R Sbjct: 321 VIDRTITPMGARLMRRWILFPLKDEKPVNERLDVVDYFFREPEFKELISDQLHLMGDLER 380 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 +S++ +GR P+D+ ++ +++ I + ++ E L+ E+L L S+ ++ Sbjct: 381 IISKVSVGRVSPRDVVQLKVALQA-IEPIKTACEHASDETLKRIGEQLN-LCASIRDRIA 438 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + +D P GG + +G D LDE R + + K + +Q + E T I +LKI +N Sbjct: 439 REVQNDPPLLVNKGGVIAEGVDRELDELRHIAFEGKDYLLKIQQRETELTGIPSLKISYN 498 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 N GY++EV ++ + D +I +QT+ N R+ T EL + E +I A + L+ Sbjct: 499 NVFGYYLEVRNTHKDKVPAD------WIRKQTLVNAERYITQELKEYEEKIMGAQDKILV 552 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E + + L A+ E + ++ + ++A +D ++ A +A++ Y RP+I + +K Sbjct: 553 LETKLYNDLVLALAEFTPAIQINANLLARLDCLLSFAQVAQDNRYIRPVIQDDDVLDIKQ 612 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP++EK L + +IAND L D ++ ++TGPNM GKS LRQ ALI +M Sbjct: 613 GRHPVIEKELP--VGEQYIANDVYL----DTEKQQIIIITGPNMAGKSALLRQTALITLM 666 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+G +VPA AHIG+VDK+F+RVG++DN++ G STFMVEM E A+ILN +++S V+ D Sbjct: 667 AQIGCFVPAESAHIGLVDKIFTRVGASDNISMGESTFMVEMNEAANILNNISSRSLVLFD 726 Query: 737 EIGRGTATLDGLSIAWATIEYLHET--NRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 E+GRGT+T DG+SIAWA +EY+HE R R L ATH+HEL ++ K R N + V + Sbjct: 727 ELGRGTSTYDGISIAWAIVEYIHENKKGRARTLFATHYHELNEMEKLYPRVKNYNVSVRE 786 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD-MRLY 853 ++ +IFL K+ G ++HS+GI V KLAG+P +++SRA ILK E N KD M+ Sbjct: 787 VDQKVIFLRKLERGGSEHSFGIHVAKLAGMPKSIVSRANTILKELES---ANSKDVMKNS 843 Query: 854 YPEIQTKESKNNLSKNDKLFVEKIKC--------LNLDEMSPLTALKTLYAVK 898 Q ++ N + + + + C L+++ ++P+ AL L +K Sbjct: 844 RGAKQVMQADNGVQLSFFQLDDPVLCQIRDEILHLDINNLTPMEALNKLDGIK 896 >gi|156932768|ref|YP_001436684.1| DNA mismatch repair protein MutS [Cronobacter sakazakii ATCC BAA-894] gi|171769802|sp|A7MJ43|MUTS_ENTS8 RecName: Full=DNA mismatch repair protein mutS gi|156531022|gb|ABU75848.1| hypothetical protein ESA_00558 [Cronobacter sakazakii ATCC BAA-894] Length = 853 Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust. Identities = 310/885 (35%), Positives = 484/885 (54%), Gaps = 43/885 (4%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E + TPMM+QY+++K+ +PD L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ETFDAHTPMMQQYLKLKAQHPDILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H +Y+ KL+ +G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGVPHHAVENYLAKLVNLGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S + + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRVSEPQDRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + F+ + ++ + + FG + Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRRP-LWEFELDTARQQLNLQFGTRDLVGFGVENAPRGL 234 Query: 259 AAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA + Y+K TQ + P I E Q + +D+A R NLEI + L+G E +L Sbjct: 235 CAAGCLLQYVKDTQRTSLPHIRSITMERQQDGIIMDAATRRNLEITQNLAGGVENTLASV 294 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D ++T G R+ + P+ D++ + R +I ++ I P+ L+ D+ R Sbjct: 295 LDCTVTPMGSRMLKRWLHMPVRDTSVLRHRQQAIAALMEYSTEIQPV---LRQVGDLERI 351 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 L+RL + P+D+A +R + + LN L + E ++ E++ + L L Sbjct: 352 LARLALRTARPRDLARMRHAFQQ-LPTLNTLLADIEAEYVQTLREQMGDFAE-LRDLLER 409 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + + P RDGG + G LDE R+L D + + L+++ E+ I LK+ N Sbjct: 410 AIIEAPPVLVRDGGVIAPGYHEELDEWRALADGATDYLDRLEIREREKLGIDTLKVGFNA 469 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GYFI+V+ + ++ ++ RQT+ N R+ EL + E+++ + AL + Sbjct: 470 VHGYFIQVSRGQSHMVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSKGKALAL 523 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + ++ L + ++ L ++ +A +D+ LA A NY P + + + +G Sbjct: 524 EKQLYDELFDLLLPHLAELQKSAAALAELDVLTNLAERADTLNYHCPTLTDKPGIRLVEG 583 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ L + PFIAN LS ++ ++TGPNMGGKST++RQ ALIV+MA Sbjct: 584 RHPVVERVLNE----PFIANPLSLSPQR-----RMLIITGPNMGGKSTYMRQTALIVLMA 634 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GS+VPA A IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V++DE Sbjct: 635 YIGSFVPAEQAEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEHSLVLMDE 694 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + + Sbjct: 695 IGRGTSTYDGLSLAWACAESLANRIKALTLFATHYFELTQLPEKMEGVANVHLDAIEHGD 754 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH---NQKDMRLYY 854 I F+H V G A SYG+ V LAG+P VI RA L+ E L + Q D Sbjct: 755 TIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESLSGNAAATQVD----- 809 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 T+ S ++ VE ++ L+ D +SP AL+ +Y +K+ Sbjct: 810 ---GTQMSLLAAAEETSPAVEALENLDPDSLSPRQALEWIYRLKS 851 >gi|304414308|ref|ZP_07395676.1| methyl-directed mismatch repair protein [Candidatus Regiella insecticola LSR1] gi|304283522|gb|EFL91918.1| methyl-directed mismatch repair protein [Candidatus Regiella insecticola LSR1] Length = 867 Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust. Identities = 313/894 (35%), Positives = 502/894 (56%), Gaps = 49/894 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E L + TPMM+QY+ +K +P+ L+FYRMGDFYELF+DDA A++ L I+LTKRG+ GK Sbjct: 5 EKLDAHTPMMQQYLRLKGEHPEILLFYRMGDFYELFYDDAKRAAKLLDISLTKRGQSAGK 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+++G AICEQI P K V R VVR+VTPGT+ Sbjct: 65 AIPMAGIPYHAIENYLAKLVQLGESAAICEQIGDPSSCK-----GPVERKVVRIVTPGTV 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTE-WAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 +++ LL N L A+ R T+ + A +DIS+G F I+ ++ + +++++ R +P E+ Sbjct: 120 SDEALLRERQDNLLAAIWRQGTQGFGYATLDISSGRFLITEPADREAMMAELERTNPVEL 179 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVE 256 ++SE E +L E + +P F + ++ + + FG + + Sbjct: 180 LYSET----FEDMALIEQRHGLR-RRPVWEFSLETARQQLNRQFGTQDLSGFGVEQADLA 234 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDI----QSTLFIDSAARSNLEILRTLSGSREQ 312 AA + Y+K TQ P I RE I Q ++ +D+A R NLE+ + LSG E Sbjct: 235 LRAAGCLLQYVKDTQRTALPHI----RELIMARQQDSIMMDAATRRNLELTQNLSGGSEN 290 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 +L +D+S+T G R+ + P D++ + R +I PI N +Q L+ Sbjct: 291 TLAAILDHSVTPMGSRMLKRWLHMPTRDNSVLLHRQQAIQEL--QPIATN-LQPPLRQVG 347 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE 432 D+ R L+RL + P+D+A IR + I +L LK++ ++ + + + + L+ Sbjct: 348 DLERILARLALRTARPRDLARIRHAFQQLPEIHDL-LKSNKTTHIQNLLSHIGQFDELLD 406 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 L+ + D P RDGG + G +A LDE R+L + + + L+++ E+ KI +LK Sbjct: 407 -LLTRAIVDSPPVLVRDGGVIAPGYNAKLDEWRALANGATDYLDQLEIREREKLKIDSLK 465 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 + N GY+++V + + ++ ++ RQT+ N R+ EL + E+++ + Sbjct: 466 VGFNGVHGYYLQVNRTQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSKG 519 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 AL IE +E + + ++ +L +++ +A +D+ LA A NY P + + + Sbjct: 520 RALAIEKILYEEIFDLLLPHLPALQSSASALAELDVLTNLAERANVLNYVCPRLHDKSEI 579 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 + GRHP++E KQ PFI+N LS + ++ LLTGPNMGGKST++RQ AL Sbjct: 580 TITKGRHPVIETVSKQ----PFISNSLLLS-----SQRRMLLLTGPNMGGKSTYMRQTAL 630 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 IV++A +GS+VPA A IG +D++F+R+G+AD+LASGRSTFMVEM ETA+IL+ AT S Sbjct: 631 IVLLAYIGSFVPAEQAEIGPIDRIFTRIGAADDLASGRSTFMVEMTETANILHNATENSL 690 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 V++DEIGRGT+T DGLS+AWA E L + + L ATH+ ELT L+ +L N L Sbjct: 691 VLMDEIGRGTSTYDGLSLAWACAEDLAQRIKAMTLFATHYFELTRLADNLCGVVNVHLDA 750 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH----NQK 848 + ++ I F++ + G A SYG+ V LAG+P +I RA LK E + HH N Sbjct: 751 MEHDDTIAFMYSIQEGAASKSYGLAVATLAGVPRHLIQRAQQKLKELESVTHHTPASNDG 810 Query: 849 DMRLYYPEIQTKESKNNLSKNDKLFV----EKIKCLNLDEMSPLTALKTLYAVK 898 D + + + ++K ++ + V E + L+ + ++P AL+ +Y +K Sbjct: 811 DPQYNHAPFKKYQNKALPAEIPPVKVAPAIEALAGLDANALTPRQALEWIYQLK 864 >gi|290894466|ref|ZP_06557424.1| DNA mismatch repair protein MutS [Listeria monocytogenes FSL J2-071] gi|290555981|gb|EFD89537.1| DNA mismatch repair protein MutS [Listeria monocytogenes FSL J2-071] Length = 860 Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust. Identities = 315/894 (35%), Positives = 499/894 (55%), Gaps = 61/894 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+EIK D+ +F+R+GDFYE+FF+DAL AS+ L ITLT R + IPMCG Sbjct: 5 TPMIKQYLEIKDKYQDAFLFFRLGDFYEMFFEDALNASQILEITLTGREGGTKEKIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A+ YI LI+ G+++AICEQ+E P + K +V+R VV+L++PGT+ +++ L Sbjct: 65 VPYHSASGYIDTLIEKGYKVAICEQVEDP-----KTTKGMVKREVVQLISPGTVMDERGL 119 Query: 146 SPTDSNYLMAVARIR-TEWAIAWIDISTGIFK--ISTSNHDRLISDIMRIDPREIIFSEK 202 ++NY+ ++ E+ A+ D+STG K + ++ DRLI+++ + RE+I S Sbjct: 120 KAKENNYIASLYCYEGKEYGFAYSDLSTGELKSTVIEASEDRLINELTTLSTRELIVSAS 179 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 E E L +V Q + F S+ E N V S S EK A Sbjct: 180 EK---------EVLSDVMKEQLGLTF--SVHEEDTIPRENEKLVTRHMSLS--EKRAIGK 226 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDYS 321 + Y+K+TQ + + + + + +D ++ NLE+ ++ G R+ +LL +D + Sbjct: 227 LLHYLKETQKRDLGHLQQAVHYETSNYMKMDYYSKRNLELAESIRGKGRQGTLLWLLDNT 286 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSI-----NFFIQNPILINPIQKILKSSPDVPR 376 T GGR+ + I PL D KI R + + NFF + ++ N LK+ D+ R Sbjct: 287 QTAMGGRMLKQWIDRPLIDRNKIIERQNDVSELMANFFERLELVEN-----LKNVYDLER 341 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R+ G +D+ +R+ + I L + + EL ++ ++L + LE+ Sbjct: 342 LAGRVAYGNVNARDLIQLRNSLYQIPRIRATLLSMNSKSLTELANQLDPCEELTEKLEEA 401 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + D P R+GG ++DG ++ LD R K IA L+ K E T IK +K+ Sbjct: 402 IM----DSAPISIREGGIIKDGYNSQLDTYRDASRNGKTWIAELERKERELTGIKTMKVG 457 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N GY+IEVT ++ +L + R+ +QT++N R+ T EL + E I +A + Sbjct: 458 FNRVFGYYIEVTRANTHLL-----PEGRYERKQTLTNAERYITPELKEKEKLILDAEEKS 512 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E + F + + + E L ++ ++ ID + A ++++ ++ RP + + V Sbjct: 513 MELEYQLFTEVRELVKDYIERLQKLAKSVSEIDCLQSFADISEKNHFIRPTLSEDGSLHV 572 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 K GRHP+VEK + QS ++ANDCDL D+N ++ L+TGPNM GKST++RQ AL Sbjct: 573 KQGRHPVVEKVMGAQS---YVANDCDL----DRNR-EILLITGPNMSGKSTYMRQVALTA 624 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 I AQ+G +VPA A + I D++F+R+G+AD+L +G+STFMVEM+E + + AT S ++ Sbjct: 625 ICAQVGCFVPAEEATLPIFDQIFTRIGAADDLIAGQSTFMVEMLEARNAIVHATKDSLIL 684 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 DEIGRGTAT DG+++A A IEY+HE + L +TH+HELTDL K L N + + Sbjct: 685 FDEIGRGTATYDGMALAQAIIEYIHENVHAKTLFSTHYHELTDLEKELHGLQNIHVSAVE 744 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE----KLYHHNQKDM 850 N ++FLHK+ G AD SYGI V +LA LP ++I RA IL+ E K+ N K Sbjct: 745 ENGKVVFLHKIKEGPADKSYGIHVAELAELPKSLIERASRILEQLENDDKKIVITNDKQP 804 Query: 851 RLYYPEIQ-----TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + E+Q + K SK KL E I +N+ +M+P+ A+ LY +++ Sbjct: 805 EEIHEEVQLSMFPVEPEKKASSKETKLLKE-IASMNIMQMTPMDAMNKLYELQS 857 >gi|251790722|ref|YP_003005443.1| DNA mismatch repair protein MutS [Dickeya zeae Ech1591] gi|247539343|gb|ACT07964.1| DNA mismatch repair protein MutS [Dickeya zeae Ech1591] Length = 852 Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust. Identities = 309/890 (34%), Positives = 487/890 (54%), Gaps = 54/890 (6%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E+L + TPMM+QY+++K+ +PD L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ESLDAHTPMMQQYLKLKAQHPDILLFYRMGDFYELFYDDARRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H +Y+ +L+++G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGVPHHAVENYLARLVQLGESVAICEQIGDPAT-----SKGPVDRKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFK-ISTSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F+ + + + + +++ R +P E++ Sbjct: 120 SDEALLQEKQDNLLAAIWQENRGFGYATLDISSGRFRLVEPVDRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 + E E L E + +P F+ + ++ + + FG +++ Sbjct: 180 YPET----FEAMPLIEHRHGLR-RRPLWEFELDTARQQLNLQFGTRDLTGFGVEQARLGL 234 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA + Y K TQ + P I E Q + +D+A R NLE+ + LSG + +L Sbjct: 235 RAAGCLLQYAKDTQRTSLPHIRGITMERQQDGIIMDAATRRNLELTQNLSGGVDNTLASV 294 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D ++T G R+ + +P+ D+ + R +I +Q+ + +Q L+ D+ R Sbjct: 295 LDRTVTPMGSRMLKRWLHTPIRDTQALLLRQQAIGA-LQD--IAAELQPFLRQVGDLERI 351 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTL 435 L+RL + P+D+A +R + +I +L + D ++LR V +L LE+ + Sbjct: 352 LARLALRSARPRDLARMRHAFQQLPDIHSLLETVNADAVQQLRAQVGHFDELRDLLERAV 411 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + P RDGG + G + LDE R L D + + L+++ + I LK+ Sbjct: 412 V----EAPPVLVRDGGVIAGGYNDELDEWRMLADGASDYLEKLEIRERDRLGIDTLKVGF 467 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+I+V+ + ++ + ++ RQT+ N R+ EL + E+++ + AL Sbjct: 468 NGVHGYYIQVSRGQSHMVPMN------YVRRQTLKNAERYIIPELKEYEDKVLTSKGKAL 521 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E +E L + ++ L ++ +A +D+ LA A NY P + + + Sbjct: 522 ALEKALYEELFDLLLPHLAELQQSAGALAELDVLSNLAERADTLNYVCPTLSDKPGIKIT 581 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ L S+PFIAN LS +L ++TGPNMGGKST++RQ ALIV+ Sbjct: 582 GGRHPVVEQVL----SEPFIANPLSLSPQR-----RLLIITGPNMGGKSTYMRQAALIVL 632 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MA +GSYVPA A IG VD++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V++ Sbjct: 633 MAHIGSYVPAEQAVIGPVDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEHSLVLM 692 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA E L + L ATH+ ELT+L + ++ N L + Sbjct: 693 DEIGRGTSTYDGLSLAWACAEALANNIKAMTLFATHYFELTNLPEKMEGVINIHLDALEH 752 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH------NQKD 849 + I F+H V G A SYG+ V LAG+P VI RA L+ E L H + Sbjct: 753 GDTIAFMHSVQEGAASKSYGLAVAALAGVPKEVIKRARQKLRELESLAGHASASHVDGSQ 812 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + L P ++ + +E ++ ++ D ++P AL LY +K Sbjct: 813 LALLAP-VEPSPA-----------MEALESIDPDTLTPRQALDWLYKLKG 850 >gi|168218088|ref|ZP_02643713.1| DNA mismatch repair protein MutS [Clostridium perfringens NCTC 8239] gi|182379897|gb|EDT77376.1| DNA mismatch repair protein MutS [Clostridium perfringens NCTC 8239] Length = 910 Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust. Identities = 297/836 (35%), Positives = 480/836 (57%), Gaps = 36/836 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY EIK D ++F+R+GDFYE+FF+DA A+R L + LT R L K PMCG Sbjct: 4 TPMMRQYFEIKENYKDCILFFRLGDFYEMFFEDAETAARELELVLTGRDCGLEKRAPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H +N YI +L+ G+++AICEQ+E P AK +V+R+V++++TPGT T+ + Sbjct: 64 IPFHASNSYIGRLVAKGYKVAICEQVEDPKFAK-----GIVKRDVIKVITPGTYTDSSFV 118 Query: 146 SPTDSNYLMAVARI--RTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREIIFSE 201 T +NY+M + R ++A DISTG F + ++ ++ +I + +P+EII + Sbjct: 119 EETKNNYIMTIYADLERNRCSLAITDISTGDFLATEGELEKGVILDEISKFNPKEIILLD 178 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 L K + T + +P +F+ + E N + S S + K ++ Sbjct: 179 S-LDQELIKDITLTTPALISRKPIEYFEENSKE-----VLNTQFGEKSNSLSLMVKKSSN 232 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 A + YI TQ ++ I E + + ID ++R NLE+ L S++ SLL +D Sbjct: 233 ALVKYILDTQKISLTNINDIEVYSLVDFMTIDLSSRRNLELTENLREKSKKGSLLWVLDK 292 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G R+ I PL + KI RL+++ + L + +++ L D+ R L + Sbjct: 293 TETSMGSRMLRRWIEEPLVNKEKITLRLNAVEELFNDLSLNDSLKEALHDIYDIERILGK 352 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 + KD+ ++ I N+ + + L + ++ L+ + + LEK++ Sbjct: 353 ISNKNANAKDLIALKTSIGKIPNVKGIIENCTSSLLNDYYNNLDDLRDIYELLEKSIK-- 410 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 +D +DG ++DG ++ +DE R + K I+SL+ + E T IK+LK+ N Sbjct: 411 --EDPSLTLKDGDLIKDGFNSEIDELRLAKTNGKDWISSLENREREFTGIKSLKVGFNKV 468 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IE++ ++ S + + R+I +QT++N RF T EL ++E ++ A+ +E Sbjct: 469 FGYYIEISKANYSSI-----PEGRYIRKQTLANAERFITPELKEIEEKLLGASEKLCSLE 523 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F + N + + L +++IA +D LA +A E ++ +P I+ +++GR Sbjct: 524 YDIFLDIRNEVENHIDRLKTTAKIIAELDCISNLAFVALENDFIKPEINEDGETKIENGR 583 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VEK + + FI ND + +K+ +L ++TGPNM GKST++RQ A+I +M Q Sbjct: 584 HPVVEKVIPKGE---FIPNDTII----NKDDNQLLIITGPNMAGKSTYMRQVAIITLMCQ 636 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPAS A+I +VDK+F+R+G++D+LA G+STFMVEM E ++IL AT S V+LDE+ Sbjct: 637 IGSFVPASKANISVVDKIFTRIGASDDLAGGKSTFMVEMWEVSNILKNATENSLVLLDEV 696 Query: 739 GRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 GRGT+T DGLSIAW+ IEY+ + RC+ L ATH+HELT L + N ++ V + + Sbjct: 697 GRGTSTYDGLSIAWSVIEYICKNKNLRCKTLFATHYHELTKLEGEIHGVRNYSVAVKEVD 756 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 IIFL K+I G AD SYGI+V KLAG+P+ VI+RA +IL+T E + D+ L Sbjct: 757 NNIIFLRKIIEGGADQSYGIEVAKLAGIPDEVINRAKEILETLEMESSKDNLDLAL 812 >gi|167764018|ref|ZP_02436145.1| hypothetical protein BACSTE_02401 [Bacteroides stercoris ATCC 43183] gi|167698134|gb|EDS14713.1| hypothetical protein BACSTE_02401 [Bacteroides stercoris ATCC 43183] Length = 871 Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust. Identities = 304/888 (34%), Positives = 490/888 (55%), Gaps = 45/888 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+Q++E+K+ +PD+++ +R GDFYE + DA+LAS LGITLTKR GK I M G Sbjct: 8 TPMMKQFLELKAKHPDAVMLFRCGDFYETYSTDAVLASEILGITLTKRANGKGKTIEMAG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KLI+ G R+AIC+Q+E P KK LV+R + LVTPG D +L Sbjct: 68 FPHHALDTYLPKLIRAGKRVAICDQLEDPKLTKK-----LVKRGITELVTPGVSINDNIL 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF--SEKE 203 + ++N+L AV + +A++DISTG F + + D + + P+E++F + Sbjct: 123 NYRENNFLAAVHFGKGACGVAFLDISTGEFLTAEGSFDHIDKLLNNFAPKEVLFERGRRG 182 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + + S F T + F + + ++ ++ + + FG A+ A Sbjct: 183 MFEGNFGSKFFTF-----ELDDWVFTETTAREKLLKHFEVKNLKGFGVEHLKNGIIASGA 237 Query: 264 I-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 I Y+ TQ I R + + +D +LE++ +++ SLL ID +I Sbjct: 238 ILQYLIMTQHTQIGHITSLARIEEDKYVRLDKFTVRSLELMGSMNDGG-SSLLDVIDKTI 296 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 + G RL + PL D IN RLD + +F + P I++ L D+ R +S++ Sbjct: 297 SPMGARLLKRWMVFPLKDVKPINGRLDVVEYFFRKPEFKGVIEEQLHLIGDLERIISKVA 356 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEKLKKLPQSLEKTLSSMLS 440 +GR P+++ ++ +++ I + D + G ++ + + +E+ ++ Sbjct: 357 VGRVSPREVVALKVALQAIEPIKEACMDADNASLNHIGGQLDICRSIRDRIEREIN---- 412 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 +D P GG ++ G +A LDE R + K + +Q + +E T I +LKI +NN G Sbjct: 413 NDPPLLVNKGGVIKSGVNAELDELRRIAYSGKDYLLQIQQRESELTGIPSLKIGYNNVFG 472 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IEV + + KD + +I +QT+ N R+ T EL + E +I A + L++E + Sbjct: 473 YYIEVRN-----VHKD-KVPQEWIRKQTLVNAERYITQELKEYEEKILGAEDKILVLETQ 526 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 + L ++ E ++ + IA +D ++ A A+E NY RP+I + + GRHP Sbjct: 527 LYAELVQSLSEFIPAIQTDANQIARLDCLLSFATAARENNYIRPVISDDEVLEIHQGRHP 586 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 ++EK L + ++AND L D ++ ++ ++TGPNM GKS LRQ ALI +MAQ+G Sbjct: 587 VIEKQLP--IGEKYVANDVML----DSSTQQIIIITGPNMAGKSALLRQTALITLMAQIG 640 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 +VPA AHIG+VDK+F+RVG++DN++ G STFMVEM E A ILN + +S V+ DE+GR Sbjct: 641 CFVPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNLSPRSLVLFDELGR 700 Query: 741 GTATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GT+T DG+SIAWA +EY+HE + R L ATH+HEL ++ KS KR N + V + + Sbjct: 701 GTSTYDGISIAWAIVEYIHEHPHAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEIDNK 760 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 +IFL K+ G ++HS+GI V K+AG+P +++ RA DILK EK N++ P ++ Sbjct: 761 VIFLRKLERGGSEHSFGIHVAKMAGMPKSIVKRAGDILKQLEK---DNRQQGIAAKPMVE 817 Query: 859 TKESKNNLSKNDKLFVEKIKC------LNLD--EMSPLTALKTLYAVK 898 E+ + + + + C LNLD ++PL AL L +K Sbjct: 818 VGETLGGMQLSFFQLDDPVLCQIRDEILNLDVNNLTPLEALNKLNDIK 865 >gi|299145064|ref|ZP_07038132.1| DNA mismatch repair protein MutS [Bacteroides sp. 3_1_23] gi|298515555|gb|EFI39436.1| DNA mismatch repair protein MutS [Bacteroides sp. 3_1_23] Length = 872 Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust. Identities = 304/887 (34%), Positives = 493/887 (55%), Gaps = 43/887 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+Q++++K+ +PD+++ +R GDFYE + DA++A+ LGITLTKR GK I M G Sbjct: 9 TPMMKQFLDLKAKHPDAVMLFRCGDFYETYSTDAIVAAEILGITLTKRANGKGKTIEMAG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KL++ G R+AIC+Q+E P KK LV+R + LVTPG D +L Sbjct: 69 FPHHALDTYLPKLVRAGKRVAICDQLEDPKMTKK-----LVKRGITELVTPGVSINDNVL 123 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 + ++N+L AV + +A++DISTG F + D + + P+EI+F + Sbjct: 124 NYKENNFLAAVHFGKASCGVAFLDISTGEFLTAEGPFDYIDKLLNNFAPKEILFERGK-- 181 Query: 206 HAEYKSLFE-TLGN--VAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 + +FE GN + F + + ++ ++ + FG A+ Sbjct: 182 ----RLMFEGNFGNKFFTFELDDWVFTETTAREKLLKHFETKNLKGFGVEHLKNGIIASG 237 Query: 263 AI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 AI Y+ TQ I R + + +D +LE++ ++ SLL ID + Sbjct: 238 AILQYLTMTQHTQIGHITSLARIEEDKYVRLDKFTVRSLELIGNMNDGG-SSLLNVIDRT 296 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 I+ G RL + PL D IN RL+ + +F + P I++ L D+ R +S++ Sbjct: 297 ISPMGARLLKRWMVFPLKDEKPINERLNVVEYFFRQPDFKELIEEQLHLIGDLERIISKV 356 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 +GR P+++ ++ +++ I ++ D L E+L L S+ ++ + + Sbjct: 357 AVGRVSPREVVQLKVALQAIEPIKQACMEAD-NASLNRIGEQLN-LCISIRDRIAKEIKN 414 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 D P GG ++DG +A LDE R + K + +Q + +EET I +LK+ +NN GY Sbjct: 415 DPPLLINKGGVIQDGVNADLDELRQISYSGKDYLLKIQQRESEETGIPSLKVAYNNVFGY 474 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IEV + + K+ +I +QT+ N R+ T EL + E +I A + L++E + Sbjct: 475 YIEVRNVHKDKVPKE------WIRKQTLVNAERYITQELKEYEEKILGAEDKILILETQL 528 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 + L A++E + + IA +D ++ A +A+E Y RPII+++ ++ GRHP+ Sbjct: 529 YTDLVQALMEFIPQIQINANQIARLDCLLSFANVARENRYIRPIIEDNDVLDIRQGRHPV 588 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 +EK L + +IAND L D ++ ++ ++TGPNM GKS LRQ ALI ++AQ+GS Sbjct: 589 IEKQLP--IGEKYIANDVML----DSDTQQIIIITGPNMAGKSALLRQTALITLLAQIGS 642 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA AHIG+VDK+F+RVG++DN++ G STFMVEM E A ILN +++S V+ DE+GRG Sbjct: 643 FVPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNVSSRSLVLFDELGRG 702 Query: 742 TATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 T+T DG+SIAWA +EY+HE + R L ATH+HEL ++ KS KR N + V + + + Sbjct: 703 TSTYDGISIAWAIVEYIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEVDNKV 762 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 IFL K+ G ++HS+GI V K+AG+P +++ RA +ILK E N++ P + Sbjct: 763 IFLRKLERGGSEHSFGIHVAKMAGMPKSIVKRANEILKQLES---DNRQQGIAGKPLAEV 819 Query: 860 KESKNNLSKNDKLFVEKIKC------LNLD--EMSPLTALKTLYAVK 898 E++ + + + I C LNLD ++P+ AL L +K Sbjct: 820 SENRGGMQLSFFQLDDPILCQIRDEILNLDVNNLTPIEALNKLNDIK 866 >gi|190411085|gb|ACE78297.1| truncated MutS [Vibrio parahaemolyticus] Length = 837 Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust. Identities = 305/877 (34%), Positives = 479/877 (54%), Gaps = 52/877 (5%) Query: 30 RQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVH 89 +QY+++K+ NP+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IPM GVP H Sbjct: 1 QQYLKLKAENPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGSSAGEPIPMAGVPFH 60 Query: 90 TANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTD 149 Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+T++ LLS Sbjct: 61 AVEGYLAKLVQLGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTVTDEALLSERL 115 Query: 150 SNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKELSHAE 208 N + A+ ++ A +D+++G F+++ + +++++ R PRE++F E Sbjct: 116 DNLIAAIYHHNGKFGYATLDVTSGRFQLTEPETEEAMMAELQRTAPRELLFPED------ 169 Query: 209 YKSLFETLG-----NVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAA 262 FE + N +P F+ ++ ++ + + FG + + AA Sbjct: 170 ----FEPVHLMSNRNGNRRRPVWEFELDTAKQQLNQQFGTRDLVGFGVEHASLGLCAAGC 225 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 I Y+K TQ P I + ++ +D+A R NLEI + L+G + +L +D+ Sbjct: 226 LIQYVKDTQRTALPHIRSLTFDRQDHSVILDAATRRNLEITQNLAGGTDNTLAAVLDHCS 285 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G R+ + P+ +N RLD+I I++ L +Q LK D+ R L+RL Sbjct: 286 TPMGSRMLKRWLHQPMRCIDTLNNRLDAIGE-IKDQGLFTDLQPTLKQIGDIERILARLA 344 Query: 383 IGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + P+D+A +R ++ + L L + +L + ++ + LE+ + Sbjct: 345 LRSARPRDMARLRHAMQQLPELESLTASLTHPYLVKLAQYAAPIDEVCELLERAIK---- 400 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 ++ P RDGG + +G + LDE R L D + + L+ E I LK+ +N G Sbjct: 401 ENPPVVIRDGGVIAEGYNEELDEWRKLADGATEYLEKLEADERERHGIDTLKVGYNAVHG 460 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 +FI+V+ + ++ ++ RQT+ N R+ EL + E+++ N+ + AL +E + Sbjct: 461 FFIQVSRGQSHLVPP------HYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALALEKK 514 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 +E L + ++ E + N + ++ +D+ LA A +YCRP + ++ GRHP Sbjct: 515 LWEELFDLLMPHLEQMQNLASAVSQMDVLQNLAERADSLDYCRPTLVKDAGIHIQAGRHP 574 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE Q +S PFIAN +LS S K+ ++TGPNMGGKST++RQ ALI +MA +G Sbjct: 575 VVE----QVTSDPFIANPIELS-----PSRKMLIITGPNMGGKSTYMRQTALIALMAHIG 625 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 SYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V++DEIGR Sbjct: 626 SYVPAESAQIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLVLMDEIGR 685 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GT+T DGLS+AWA+ E+L L ATH+ ELT+L L N L + + I Sbjct: 686 GTSTYDGLSLAWASAEWLATQIGAMTLFATHYFELTELPNLLPNLANVHLDAVEHGDSIA 745 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 F+H V G A SYG+ V LAG+P TVI A L E+L + P T Sbjct: 746 FMHAVQEGAASKSYGLAVAGLAGVPKTVIKNARTKLSQLEQLGQASDS------PRPSTV 799 Query: 861 ESKNNLS--KNDKLFVEKIKCLNLDEMSPLTALKTLY 895 + N LS + + ++ D+++P AL+ LY Sbjct: 800 DVANQLSLIPEPSEIEQALSNIDPDDLTPRQALEELY 836 >gi|189460181|ref|ZP_03008966.1| hypothetical protein BACCOP_00817 [Bacteroides coprocola DSM 17136] gi|189433042|gb|EDV02027.1| hypothetical protein BACCOP_00817 [Bacteroides coprocola DSM 17136] Length = 874 Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust. Identities = 310/888 (34%), Positives = 492/888 (55%), Gaps = 44/888 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY ++K+ +PD+++ +R GDFYE + +DA+ AS LGITLTKR GK + M G Sbjct: 10 TPMMKQYFDLKAKHPDAVMLFRCGDFYETYSEDAVTASEILGITLTKRANGQGKTVEMAG 69 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KLI+ G R+AIC+Q+E P KK LV+R + LVTPG D +L Sbjct: 70 FPHHALDTYLPKLIRAGRRVAICDQLEDPKTTKK-----LVKRGITELVTPGVAISDNVL 124 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF--SEKE 203 S ++N+L AV +T +A++DISTG F + D + + P+E++F +K Sbjct: 125 SYKENNFLAAVHFGKTACGVAFLDISTGEFLTAEGPFDYIDKLLNNFAPKEVLFERGKKP 184 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + + S F T + F + + ++ ++ + FG A+ A Sbjct: 185 MFEGNFGSKFFTF-----ELDDWVFTEASAREKLLKHFETKNLKGFGVEHLKNGIIASGA 239 Query: 264 I-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 I Y+ TQ I R + + +D +LE++ +++ SLL ID++I Sbjct: 240 ILQYLDMTQHYQIGHITSLARIEEDKYVRLDKFTVRSLELIGSMNEGG-TSLLDVIDHTI 298 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 + G RL I PL D IN RLD + +F + P + I++ L D+ R +S+ Sbjct: 299 SPMGARLLKRWIVFPLKDVKPINERLDVVEYFFREPDFKDFIEEKLHLIGDLERIVSKAA 358 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 +GR P+++ ++ +++ I N L D E LR E+L L S+ ++ +++D Sbjct: 359 VGRISPREVVQLKVALQAIEPIKNACLNAD-NESLRKIGEQLN-LCASIRDKIAKEINND 416 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P GG + DG + LDE R + K + +Q + +E T I +LKI +NN GY+ Sbjct: 417 PPLLVNKGGVIADGVNQELDELRHIAYSGKDYLLQVQQRESELTGIPSLKIAYNNVFGYY 476 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IEV ++ + D +I +QT+ N R+ T EL + E +I A + L++E + Sbjct: 477 IEVRNTHKDKVPAD------WIRKQTLVNAERYITQELKEYEEKILGAEDKILILETRLY 530 Query: 563 EILSNAIIEQSESLD-NASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 L + + ++ NA+Q IA +D ++ A A+ Y RP++ + +K GRHP+ Sbjct: 531 NELVAELADFIPAIQINATQ-IARLDCLLSFANAARANKYIRPVVADDDILDIKQGRHPV 589 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 +EK L + + +IAND L D + ++ ++TGPNM GKS LRQ ALI +MAQ+G Sbjct: 590 IEKQLP--AGEKYIANDVYL----DTETQQIIIITGPNMAGKSALLRQTALITLMAQIGC 643 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA AHIG+VDK+F+RVG++DN++ G STFMVEM E A ILN + +S V+ DE+GRG Sbjct: 644 FVPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNLSPRSLVLFDELGRG 703 Query: 742 TATLDGLSIAWATIEYLHETNRCRG--LLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 T+T DG+SIAWA +E++HE R R L ATH+HEL D+ +S R N + V + + + Sbjct: 704 TSTYDGISIAWAIVEHIHEHKRARARTLFATHYHELNDMEESFPRIKNYNVSVKEVDNKV 763 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 IFL K+ G ++HS+GI V K+AG+P T++ RA +IL EK N+++ + +++ Sbjct: 764 IFLRKLERGGSEHSFGIHVAKMAGMPKTIVKRADEILHQLEK---ENRQEGMSSHHKVEP 820 Query: 860 KESKNN------LSKNDKLFVE-KIKCLNLD--EMSPLTALKTLYAVK 898 K + +D + + + + LNLD ++PL AL L +K Sbjct: 821 KTVHQDGVQLSFFQLDDPVLCQIRDEILNLDVNNLTPLEALNKLNDIK 868 >gi|282889672|ref|ZP_06298211.1| hypothetical protein pah_c004o009 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500246|gb|EFB42526.1| hypothetical protein pah_c004o009 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 849 Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust. Identities = 303/839 (36%), Positives = 481/839 (57%), Gaps = 46/839 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM Q+ K +++ +RMGDFYE F++DA L ++ +TLT+R + IPM G Sbjct: 17 SPMMVQWQTCKEQAGSAILLFRMGDFYEAFYEDAALLAKEADLTLTRR-----QGIPMSG 71 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H++ YI KL+ G+R+AI EQ+ES E K LV+R +VR+VTPGT+ LL Sbjct: 72 VPHHSSEAYIDKLVSKGYRVAIAEQVESAKE-----TKGLVKREIVRVVTPGTVITSSLL 126 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREIIFSEKEL 204 + +N+ ++ ++ + +A++D++T F++ H++ L++++ R++P E + S+K Sbjct: 127 AENTNNFFASIIQVGALYGLAFLDLTTSEFRVIEFEHEQELLNEVCRLNPAEFLTSQKFA 186 Query: 205 SHAEYKSLFETL---GNVAV-AQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 + ++ FE + V V + F+H ++ + + ++ + ++D FG V A Sbjct: 187 N--KHPLFFEEIRKNNQVLVNTHDDWHFEHQVTYNFLIQHFKVHSLDGFGLKGMVPGVHA 244 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQ-----STLFIDSAARSNLEILRTLS-GSREQSL 314 A A+ ++++ ++ DIQ L +D +LE++ L+ GSR+ +L Sbjct: 245 AGALLQYLQSEL----SLPIEHITDIQPYTTSQYLSLDRMTLRHLELIDPLNHGSRKNTL 300 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D+S T G RL + I PL +I+ R +++ F P L+ I +L+ D+ Sbjct: 301 LGVLDHSHTPMGARLLRQWIKQPLLSIPEIHQRQEAVQAFYDTPSLMQRIGAVLEQVRDL 360 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGA-VEKLKKLPQSLEK 433 R + R+ G P+D+ +R + I L L L +++ LP+ + + Sbjct: 361 ERLMMRISSGYATPRDLVALRFSMEPLPEIKTLLLTLASQSALLATEAQRIDFLPE-MTR 419 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 +++ L DD P +G RDG LDE R + SK IA Q + +ET +K+LK+ Sbjct: 420 LIANALVDDPPVKITEGKIFRDGYHPELDELREISRDSKSWIARYQTQIRDETGLKSLKV 479 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GY+IEV+ A + D F RQT+ N RF T EL + E ++ NA Sbjct: 480 GFNRMFGYYIEVSKGQAEKMP------DSFQRRQTLVNAERFITPELKNYEAKVLNAEER 533 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 IE E F+ L I + S+ + +Q +A ID +L A+ Y RP++D+S + Sbjct: 534 ISAIENELFQTLRQQIGQFSKQVLTTAQALARIDCLRSLGEAARTNQYIRPLVDDSAHLK 593 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + DGRHP++E + + FI ND L D + +L L+TGPNM GKST++RQ ALI Sbjct: 594 IVDGRHPVIEAA---HAGEKFIPNDTLL----DGSDNRLLLITGPNMAGKSTYIRQVALI 646 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 IMAQMGS++PA AH+G++DK+F+R+G++D+L+ G+STFMVEM+ETA+IL+ AT++S V Sbjct: 647 TIMAQMGSFIPAKEAHVGLIDKVFTRIGASDDLSRGQSTFMVEMVETANILHNATSRSLV 706 Query: 734 ILDEIGRGTATLDGLSIAWATIEYL--HETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 ILDEIGRGT+T DG+SIAW+ E+L E + L ATH+ ELT L + + N + Sbjct: 707 ILDEIGRGTSTYDGISIAWSVAEHLLITEGKMAKTLFATHYWELTKLEEKIPGAVNYNVA 766 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM 850 V ++ + IIFL K+I G D SYGI VG+LAGLP +VI+RA +IL E+ + NQK + Sbjct: 767 VQENADNIIFLRKIIKGGTDKSYGIHVGRLAGLPPSVITRAKEILVHLEE--NANQKSV 823 >gi|325983659|ref|YP_004296061.1| DNA mismatch repair protein MutS [Nitrosomonas sp. AL212] gi|325533178|gb|ADZ27899.1| DNA mismatch repair protein MutS [Nitrosomonas sp. AL212] Length = 865 Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust. Identities = 311/880 (35%), Positives = 479/880 (54%), Gaps = 33/880 (3%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ IK+ PD L+FYRMGDFYELFFDDA A++ LGITLT+RG G+ I M G Sbjct: 9 TPMMQQYLRIKAQYPDMLMFYRMGDFYELFFDDAEKAAKLLGITLTRRGASAGEPIKMAG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ KL+K G IAICEQ+ +K V R VVR++TPGTLT+ LL Sbjct: 69 VPYHAAEQYLAKLVKAGESIAICEQV-----GDLATSKGPVAREVVRILTPGTLTDAALL 123 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 + L+++ + +AW++++ G +I ++ ++S++ R+ P EI+ E Sbjct: 124 EDKRNCILLSLWIHESILGLAWLNLAAGQLRILETSPQNMLSELERLQPAEILIPEA--- 180 Query: 206 HAEYKSLFETLGNVAVAQ--PNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAAAA 262 +L E G V + P FD + S + + + FG A +A Sbjct: 181 ----LTLDELQGKKWVIKRLPAWQFDRDNAISNLKRQFATHDLCGFGCEDLSTALCAVSA 236 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 + Y++ TQ I + E + +D+A R NLEI T+ G R +LL +D Sbjct: 237 LLEYVRLTQGAAALHITSLQAERESVYVRMDAATRRNLEISETIRGERSPTLLSLLDTCS 296 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFI-QNPILINPIQKILKSSPDVPRSLSRL 381 T G RL + PL D +I RLDSI I +N ++ +L+ D+ R +R+ Sbjct: 297 TNMGSRLLQFWLHHPLRDRGEIQKRLDSITVLIGENGSSYVAVRNLLRQIVDIERITARI 356 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 + P+D++ +RD ++ I+ + E + ++ L+ P +L + L+ L + Sbjct: 357 ALKSARPRDLSGLRDSLKLFPEIITTLAQCH-SERIDRLIQALQVEP-ALGERLNKALLE 414 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + R+G + DG D LDE R+L++ + L+ + E T I NLK+++N G+ Sbjct: 415 EPGVVLREGNVIADGYDIELDELRALQNNCGEFLLQLESREKERTGIPNLKVEYNRVHGF 474 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IEVT + + + D + RQT+ + R+ T EL E++ +A + AL E Sbjct: 475 YIEVTHAHSEKIPVD------YRRRQTLKSAERYITPELKAFEDKALSAQDRALAREKYL 528 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 ++ L +I+ +L + +A ID+ LA A+ +Y P + N + GRHP+ Sbjct: 529 YDELIETLIQHVPALQEMALSVAEIDVLCTLAERAQVLDYTAPYLSNEDIVSIDTGRHPV 588 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE ++ F+AND L ++ L+TGPNMGGKST++RQ ALI ++ G Sbjct: 589 VESQVEN-----FVANDVQLGT-QQTGIQQMLLITGPNMGGKSTYMRQIALISLLVHCGC 642 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 YVPA A IGI+D++F+R+G+AD+LASGRSTFMVEM ETA+IL+ AT QS V++DE+GRG Sbjct: 643 YVPAKKACIGILDQIFTRIGAADDLASGRSTFMVEMTETANILHNATAQSLVLMDEVGRG 702 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 T+T DGL++A+A +L NR L ATH+ ELT L++ K+ N L + + I+F Sbjct: 703 TSTFDGLALAFAIARHLLTKNRSLTLFATHYFELTKLAEEFKQVKNVHLDAVEYKQHIVF 762 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKE 861 LHKV G A SYG+QV LAG+P + I A L E+ H + + L+ + E Sbjct: 763 LHKVTEGPASQSYGLQVAALAGVPESAIRVARKYLINLEQESIHREPQLDLFALSVAEPE 822 Query: 862 SKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWT 901 + + + ++ L+ DE+SP AL+ +Y +K T Sbjct: 823 ---EIVMQEHPVIPMLRNLSPDELSPRQALEQIYLLKKMT 859 >gi|206579347|ref|YP_002236898.1| DNA mismatch repair protein MutS [Klebsiella pneumoniae 342] gi|238058944|sp|B5XV49|MUTS_KLEP3 RecName: Full=DNA mismatch repair protein mutS gi|206568405|gb|ACI10181.1| DNA mismatch repair protein MutS [Klebsiella pneumoniae 342] Length = 853 Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust. Identities = 307/889 (34%), Positives = 488/889 (54%), Gaps = 51/889 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +NL + TPMM+QY+++K+ +PD L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 DNLDAHTPMMQQYLKLKAQHPDILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPHHAVENYLAKLVNQGESVAICEQIGDPAT-----TKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAE-SSLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y+K TQ + P I E Q ++ +D+A R NLEI + L+G + + Sbjct: 231 PRGLCAAGCLLQYVKDTQRTSLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGTDNT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I + +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTAVLVERQQTIGALQER---YTELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R L+RL + P+D+A +R ++ + +L L + + ++ EK+ + + L + Sbjct: 348 LERILARLALRTARPRDLARMRHALQQ-LPLLRELLADVDRQPVQKLREKMGEFTE-LRE 405 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + D P RDGG + G LDE R+L D + + L+++ E + LK+ Sbjct: 406 LLERSVIDAPPVLVRDGGVIAPGYSEELDEWRALADGATDYLDKLEIRERERLGLDTLKV 465 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + Sbjct: 466 GYNAVHGYYIQISRGQSHL------APIHYVRRQTLKNAERYIIPELKEYEDKVLTSKGK 519 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E + ++ L + ++ L ++ +A +D+ + LA A+ NYC P + Sbjct: 520 ALALEKQLYDELFDLLLPHLADLQTSASALAELDVLVNLAERAETLNYCCPTFSDKPGIR 579 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + +GRHP+VE+ LK+ PFIAN L+ ++ ++TGPNMGGKST++RQ ALI Sbjct: 580 ISEGRHPVVEQVLKE----PFIANPLQLAPQR-----RMLIITGPNMGGKSTYMRQTALI 630 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V Sbjct: 631 ALLAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEHSLV 690 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L Sbjct: 691 LMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH---NQKDM 850 + + I F+H V G A SYG+ V LAG+P VI RA L+ E + + Q D Sbjct: 751 EHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESISPNAAATQVD- 809 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 T+ S + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 810 -------GTQMSLLAAPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|189030771|sp|A3NWZ4|MUTS_BURP0 RecName: Full=DNA mismatch repair protein mutS Length = 891 Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust. Identities = 307/883 (34%), Positives = 462/883 (52%), Gaps = 40/883 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ IKS +PD+LVFYRMGDFYELFF+DA A+R L +TLT+RG G I M G Sbjct: 21 TPMMQQYLRIKSEHPDTLVFYRMGDFYELFFEDAEKAARLLDLTLTQRGASAGTPIKMAG 80 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H Y+ KL+K G AICEQI P +K V R VVR+VTPGTLT+ LL Sbjct: 81 VPHHAVEQYLAKLVKFGESAAICEQIGDPAT-----SKGPVERKVVRVVTPGTLTDAALL 135 Query: 146 SPTDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 S +L+A+ + + +AW+++++G +++ D+L + + RI P EI+ Sbjct: 136 SDKSDVFLLALCVGHNKRGVASNIGLAWLNLASGALRLAELAPDQLGAALERIRPAEILA 195 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 ++ + +S+ +G + P FD + R+ D + ++D FG+ + Sbjct: 196 ADGTI-----ESVPAGMGAITRV-PAWHFDIASGTQRLCDQLEVASLDGFGAQALTSANG 249 Query: 260 AAAAIS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA A+ Y TQ + + E+ + +D + R NLE+ TL G+ +L + Sbjct: 250 AAGALLIYAAATQGQQLRHVRSLKVENESEYIGLDPSTRRNLELTETLRGTESPTLYSLL 309 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP--ILINPIQKILKSSPDVPR 376 D T G RL + P S R +I + P ++ ++ L+ DV R Sbjct: 310 DTCCTAMGSRLLRHWLHHPPRASVAAQARHQAIGALLDAPPNAGLDSLRSALRQIADVER 369 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 RL + P+D++ +RD + + + G +E + P L+ Sbjct: 370 ITGRLALLSARPRDLSSLRDTFAALPALRERVAEIASNAAALGRLEAALEPPPGCLDLLT 429 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 ++ + RDGG + G DA LDE R + + + + L+ + T I NL++++N Sbjct: 430 RAIAAEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLETRERARTGISNLRVEYN 489 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 G++IEVT + D + RQT+ N R+ T EL E++ +A AL Sbjct: 490 KVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTFEDKALSAQERALA 543 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 E ++ + A++ E + +A +D+ A A A+ ++ P + + Sbjct: 544 RERALYDGVLQALLPHIEGCQRVASGLAELDLLAAFAERARTLDWVAPEFTDEIGIEIDQ 603 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE ++Q FIANDC L+ KL L+TGPNMGGKSTF+RQ ALI +M Sbjct: 604 GRHPVVEAQVEQ-----FIANDCALNPER-----KLLLITGPNMGGKSTFMRQTALIALM 653 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+ILN AT S V++D Sbjct: 654 AYVGSYVPAKAARFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILNDATPHSLVLMD 713 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DGL++AWA +L NRC L ATH+ ELT L + N L + Sbjct: 714 EIGRGTSTFDGLALAWAIARHLLSHNRCYTLFATHYFELTQLPAEFPQAANVHLSAVEHG 773 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN---QKDMRLY 853 GI+FLH V G A+ SYG+QV +LAG+P VI A L+ E+ Q D+ Sbjct: 774 HGIVFLHAVEEGPANQSYGLQVAQLAGVPAPVIRAARKHLEHLEQQSAAQATPQLDLFAA 833 Query: 854 YPEIQTKE-SKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 P + E ++ + +E++ L+ D++ P AL LY Sbjct: 834 PPVVDEPECNEPPAAATPHPALERLLELDPDDLKPRDALDLLY 876 >gi|182626334|ref|ZP_02954089.1| DNA mismatch repair protein MutS [Clostridium perfringens D str. JGS1721] gi|177908353|gb|EDT70898.1| DNA mismatch repair protein MutS [Clostridium perfringens D str. JGS1721] Length = 909 Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust. Identities = 297/836 (35%), Positives = 480/836 (57%), Gaps = 36/836 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY EIK D ++F+R+GDFYE+FF+DA A+R L + LT R L K PMCG Sbjct: 4 TPMMRQYFEIKENYKDCILFFRLGDFYEMFFEDAETAARELELVLTGRDCGLEKRAPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H +N YI +L+ G+++AICEQ+E P AK +V+R+V++++TPGT T+ + Sbjct: 64 IPFHASNSYIGRLVAKGYKVAICEQVEDPKFAK-----GIVKRDVIKVITPGTYTDSSFV 118 Query: 146 SPTDSNYLMAVARI--RTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREIIFSE 201 T +NY+M + R ++A DISTG F + ++ ++ +I + +P+EII + Sbjct: 119 EETKNNYIMTIYADLERNRCSLAITDISTGDFLATEGELEKGVILDEISKFNPKEIILLD 178 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 L K + T + +P +F+ + E N + S S + K ++ Sbjct: 179 S-LDQELIKDITLTTPALISRKPIEYFEENFEE-----VLNNQFGEKSNSLSLMVKKSSN 232 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 A + YI TQ ++ I E + + ID ++R NLE+ L S++ SLL +D Sbjct: 233 ALVKYILDTQKISLTNINDIEVYSLVDFMTIDLSSRRNLELTENLREKSKKGSLLWVLDK 292 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G R+ I PL + KI RL+++ + L + +++ L D+ R L + Sbjct: 293 TETSMGSRMLRRWIEEPLVNKEKITLRLNAVEELFNDLSLNDSLKEALHDIYDIERILGK 352 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 + KD+ ++ I N+ + + L + ++ L+ + + LEK++ Sbjct: 353 ISNKNANAKDLIALKTSIGKIPNVKGIIENCTSSLLKNYHHNLDDLRDIYELLEKSIK-- 410 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 +D +DG ++DG ++ +DE R + K I+SL+ + E T IK+LK+ N Sbjct: 411 --EDPSLTLKDGDLIKDGFNSEIDELRLAKTNGKDWISSLENREREFTGIKSLKVGFNKV 468 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IE++ ++ S + + R+I +QT++N RF T EL ++E ++ A+ +E Sbjct: 469 FGYYIEISKANYSSI-----PEGRYIRKQTLANAERFITPELKEIEEKLLGASEKLCSLE 523 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F + N + + L +++IA +D LA +A E ++ +P I+ +++GR Sbjct: 524 YDIFLDIRNEVENHIDRLKTTAKIIAELDCISNLAFVALENDFIKPEINEDGETKIENGR 583 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VEK + + FI ND + +K+ +L ++TGPNM GKST++RQ A+I +M Q Sbjct: 584 HPVVEKVIPKGE---FIPNDTII----NKDDNQLLIITGPNMAGKSTYMRQVAIITLMCQ 636 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPAS A+I +VDK+F+R+G++D+LA G+STFMVEM E ++IL AT S V+LDE+ Sbjct: 637 IGSFVPASKANISVVDKIFTRIGASDDLAGGKSTFMVEMWEVSNILKNATENSLVLLDEV 696 Query: 739 GRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 GRGT+T DGLSIAW+ IEY+ + RC+ L ATH+HELT L + N ++ V + + Sbjct: 697 GRGTSTYDGLSIAWSVIEYICKNKNLRCKTLFATHYHELTKLEGEIHGVRNYSVAVKEVD 756 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 IIFL K+I G AD SYGI+V KLAG+P+ VI+RA +IL+T E + D+ L Sbjct: 757 NNIIFLRKIIEGGADQSYGIEVAKLAGIPDEVINRAKEILETLEMESSKDNLDLAL 812 >gi|50250471|emb|CAH03856.1| DNA mismatch repair protein MutS [Pseudomonas stutzeri] Length = 859 Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust. Identities = 309/885 (34%), Positives = 486/885 (54%), Gaps = 40/885 (4%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 ++L TPMM+QY ++K +PD L+FYRMGDFYELF++DA A++ L ITLT RG+ G Sbjct: 6 QDLSKHTPMMQQYWKLKREHPDQLMFYRMGDFYELFYEDAKKAAKLLDITLTARGQSGGN 65 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H+A Y+ +L+K+G + ICEQI P +K V R VVR++TPGT+ Sbjct: 66 AIPMAGIPFHSAEGYLSRLVKLGESVVICEQIGDPAT-----SKGPVERQVVRIITPGTV 120 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREII 198 +++ LL N L AV + ++ +DI++G F + + L++++ R++P E++ Sbjct: 121 SDEALLDEHRDNLLAAVVGDERLFGLSVLDITSGRFSVQEFGGWETLLAEVERLNPAELM 180 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQVEK 257 + ++ + V + + FD + + + + FG Sbjct: 181 IPD------DWPAGLPLEKRRGVRRRAPWDFDRDSAFKGLCQQFATQDLKGFGCEKLTLA 234 Query: 258 TAAAAA-ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 AA ++Y K+TQ + E + ++ +D A R NLE+ L G R+ +L Sbjct: 235 IGAAGCLLTYAKETQRTALHHLRSLRHERLDDSVVLDGATRRNLELDINLGGGRDNTLQS 294 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D T G RL + + PL D + R DSI +++ IQ LK D+ R Sbjct: 295 VVDRCQTAMGSRLLSRWLNRPLRDRQVLEARQDSITCLLEH-YRFEQIQPQLKDIGDLER 353 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 L+R+ + P+D+A +RD + + + L ++ + L ++ P+ L L+ Sbjct: 354 ILARIGLRNARPRDLARLRDAL-AALPQLQAGMQELVAPHLIELAASIRTYPE-LADLLA 411 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + D+ P RDGG L+ G DA LDE +SL + + + + L+ + T + NLK+ +N Sbjct: 412 KAIIDNPPAVIRDGGVLKTGYDAELDELQSLSENAGQYLMDLETREKARTGLANLKVGYN 471 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GYFIE+ S A D +I RQT+ RF T EL + E++ +A + AL Sbjct: 472 RVHGYFIELPSKQAESAPAD------YIRRQTLKGAERFITPELKEFEDKALSAKSRALA 525 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 E + +E L +I L ++ +A +D+ LA A + RP ++ Sbjct: 526 REKQLYEELLELLIGHLAPLQESAAALAELDVLSNLAERALTLDLNRPRFVEQPCLRIEQ 585 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE+ L + PF+AND L + ++ ++TGPNMGGKST++RQ ALIV++ Sbjct: 586 GRHPVVEQVL----TTPFVANDLSLD-----DETRMLVITGPNMGGKSTYMRQTALIVLL 636 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ A+++S V++D Sbjct: 637 AQIGSFVPAAACELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNASDRSLVLMD 696 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 E+GRGT+T DGLS+AWA E+L + R L ATH+ ELT L +S N L ++ N Sbjct: 697 EVGRGTSTFDGLSLAWAAAEHLAKL-RAFTLFATHYFELTVLPESEPVVANVHLSATEHN 755 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--KLYHHNQKDMRLYY 854 E I+FLH V+PG A SYG+ V +LAG+P VI RA D L E L H +M Sbjct: 756 ERIVFLHHVLPGPASQSYGLAVAQLAGVPGEVIQRARDHLSRLETTSLPH----EMPKIA 811 Query: 855 PEIQTKESKNNLSKN-DKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P +N+L + +E + + D+++P AL+ LY++K Sbjct: 812 PGQPAPPLQNDLFASLPHPVIEALGKVQPDDLTPRQALELLYSLK 856 >gi|329296051|ref|ZP_08253387.1| DNA mismatch repair protein MutS [Plautia stali symbiont] Length = 853 Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust. Identities = 310/885 (35%), Positives = 484/885 (54%), Gaps = 43/885 (4%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 ++++ + TPMM+QY+ +K+ +PD L+FYRMGDFYELF+DDA AS+ L I+LTKRG Sbjct: 5 VDKDFSTHTPMMQQYLRLKADHPDILLFYRMGDFYELFYDDARRASQLLEISLTKRGASA 64 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G+ IPM GVP H Y+ KL+++G +AI EQI P +K V R VVR+VTPG Sbjct: 65 GEPIPMAGVPYHAVEGYLAKLVQLGESVAISEQIGDPAL-----SKGPVERKVVRIVTPG 119 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPRE 196 T++++ LL N L A+ + + + A +DIS+G F++S + + + +++ R +P E Sbjct: 120 TISDEALLQERQDNLLAAIFQSQRGFGYATLDISSGRFRLSEPGDVETMAAELQRTNPAE 179 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 +++ E + +L + + +P F+ + ++ + + FG + + Sbjct: 180 LLYPED----LQAMTLIDQRRGLR-RRPLWEFEIDTARQQLNLQFGTRDLSGFGVEQAHL 234 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA + Y+K TQ + P I E Q ++ +D+A R NLEI + L+G E +L Sbjct: 235 ALRAAGCLLQYVKDTQRTSLPHIRSLSMERQQDSVIMDAATRRNLEITQNLAGGSENTLA 294 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D ++T G R+ + PL D I R +SI P L +Q +L+ D+ Sbjct: 295 AVLDKTVTPMGSRMLKRWLHMPLRDVATITCRQESIAEL--QP-LSEELQPVLRQVGDLE 351 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R L+RL + P+D+A +R + LN L+ L +++ + L + L Sbjct: 352 RILARLALRTARPRDLARMRHAFHQ-LPALNTQLEGVATPHLNALRDRMGDFSE-LRELL 409 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 S + + P RDGG + G +A LDE R+L D + + L+++ E+ + LK+ Sbjct: 410 ESAIIESPPVLVRDGGVIAPGYNAELDEWRALADGASDYLDRLEIREREKLGLDTLKVGF 469 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+I+V+ + ++ ++ RQT+ N R+ EL + E+++ + AL Sbjct: 470 NAVHGYYIQVSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSKGKAL 523 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E ++ L + ++ E+L ++ +A +D+ LA A NYCRP++ + Sbjct: 524 ALEKSLYDELFDRLLPHLEALQQSAAALAELDVLANLAERAWTLNYCRPVLQEKAGIRIT 583 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ LK+ PFIAN LS ++ ++TGPNMGGKST++RQ ALI + Sbjct: 584 AGRHPVVEQVLKE----PFIANPLSLSMQR-----RMLIITGPNMGGKSTYMRQTALIAL 634 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V++ Sbjct: 635 MAWIGSYVPAEETVIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVLM 694 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 695 DEIGRGTSTYDGLSLAWACAESLANRIKAMTLFATHYFELTTLPEKMEGVVNVHLDAVEH 754 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 + I F+H V G A SYG+ V LAG+P VI RA LK E L + Sbjct: 755 GDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARHKLKELEALSGSSAGS------ 808 Query: 856 EIQTKESKN--NLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 T E L VE ++ L+ D ++P AL+ +Y +K Sbjct: 809 ---TVEGSQLPLLVAETSPAVEALEALDPDSLTPKQALEWIYRLK 850 >gi|113867230|ref|YP_725719.1| DNA mismatch repair protein MutS [Ralstonia eutropha H16] gi|123329387|sp|Q0KCC0|MUTS_RALEH RecName: Full=DNA mismatch repair protein mutS gi|113526006|emb|CAJ92351.1| DNA mismatch repair protein MutS [Ralstonia eutropha H16] Length = 899 Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust. Identities = 319/921 (34%), Positives = 475/921 (51%), Gaps = 57/921 (6%) Query: 9 QKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGI 68 +K EQ + TPMM+QY+ IK+ +PD+L+FYRMGDFYELF DDA A+R L I Sbjct: 5 KKTDPEQAQADSAASRHTPMMQQYLRIKADHPDTLLFYRMGDFYELFHDDAEKAARLLDI 64 Query: 69 TLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRR 128 TLT RG G I M G+P H+A+ Y+ +L+K+G +AICEQI P +K V R Sbjct: 65 TLTARGASNGVPIRMAGIPFHSADQYLARLVKLGESVAICEQIGDPAT-----SKGPVER 119 Query: 129 NVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAI-----AWIDISTGIFKISTSNHD 183 VVR+VTPGTLT+ LL +LMAV + T + AW+++++G ++ Sbjct: 120 KVVRIVTPGTLTDAALLPDKADTFLMAVHQQTTRRGVSKTGLAWLNLASGELRLMECEAA 179 Query: 184 RLISDIMRIDPREIIFSEK-ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYN 242 +L ++ RI P E+++++ EL L P FD R+ + Sbjct: 180 QLGRELERIRPAELLYADGIELP---------ALACARTRLPEWHFDQDAGTRRLREQLG 230 Query: 243 ITTVDTFGSFSQVEKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLE 301 + ++D FG AA A+ +Y TQ + + + E + +DSA R NLE Sbjct: 231 VASLDPFGCAGLGAALGAAGALLNYAATTQGQSLRHVQGVKVERESEYVGLDSATRRNLE 290 Query: 302 ILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILI 361 + TL G +L +D T G R + PL D R +I I Sbjct: 291 LTETLRGGESPTLFSLLDTCCTAMGSRALRHWLHHPLRDPALPQARQQAIGVLIDQGT-- 348 Query: 362 NPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAV 421 + ++ L+ DV R SRL + P+D++ +RD +R+ ++ +++D L Sbjct: 349 DALRTALRRLADVERITSRLALLNARPRDLSSLRDTLRALPDV-QACIRDDQGSTLLAQS 407 Query: 422 EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLK 481 +PQ L ++++ T RDGG + G DA LDE R + + + + L+ + Sbjct: 408 LHDLAVPQDCLDLLVRAVAEEPATVVRDGGVIARGYDAGLDELRDISENCGQFLIDLETR 467 Query: 482 YAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELI 541 T I NL+++ N G++IEVT+ A + D + RQT+ N R+ T EL Sbjct: 468 ERARTGIANLRVEFNRVHGFYIEVTNGQADKVPDD------YRRRQTLKNAERYITPELK 521 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 E++ +A + AL E + ++ L A++ L + +A +D+ ALA A+ ++ Sbjct: 522 AFEDKALSAQDRALAREKQLYDGLLQALLPHIGELQRVAGALARLDVLTALAERAQTLDW 581 Query: 602 CRP--IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPN 659 P + +N + + GRHP+VE L +S FIANDC L+ + KL L+TGPN Sbjct: 582 SAPERVAENVVDIV--QGRHPVVEGQLAAESVA-FIANDCQLN-----EARKLLLITGPN 633 Query: 660 MGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIE 719 MGGKSTF+RQ ALIV++A +G+YVPA A IG +D++F+R+G+AD+LA GRSTFMVEM E Sbjct: 634 MGGKSTFMRQTALIVLLACVGAYVPARRAVIGPIDRIFTRIGAADDLAGGRSTFMVEMTE 693 Query: 720 TASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLS 779 A IL+ AT S V++DEIGRGT+T DGL++AWA +L NR L ATH+ ELT L Sbjct: 694 AAGILHHATPASLVLMDEIGRGTSTFDGLALAWAIARHLLSHNRSHTLFATHYFELTQLP 753 Query: 780 KSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF 839 + + N L + +GI+FLH V G A SYG+QV +LAG+P VI A L Sbjct: 754 QEFPQAANVHLSAVEHGDGIVFLHAVQDGPASQSYGLQVAQLAGVPQPVIRAARKHLAWL 813 Query: 840 EKLYHHNQKDMRL-----------------YYPEIQTKESKNNLSKNDKLFVEKIKCLNL 882 E+ +L P L+ V+ + L+ Sbjct: 814 EQQSADATPTPQLDLFAAPPTPDDDEDDFGAAPSAVPAPLAPTLAPEQAALVDALANLDP 873 Query: 883 DEMSPLTALKTLYAVKAWTLE 903 D ++P AL+ LY +KA E Sbjct: 874 DTLTPRAALEALYRLKALAGE 894 >gi|293368547|ref|ZP_06615155.1| DNA mismatch repair protein MutS [Bacteroides ovatus SD CMC 3f] gi|292636344|gb|EFF54828.1| DNA mismatch repair protein MutS [Bacteroides ovatus SD CMC 3f] Length = 872 Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust. Identities = 306/887 (34%), Positives = 494/887 (55%), Gaps = 43/887 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+Q++++K+ +PD+++ +R GDFYE + DA++A+ LGITLTKR GK I M G Sbjct: 9 TPMMKQFLDLKAKHPDAVMLFRCGDFYETYSTDAIVAAEILGITLTKRANGKGKTIEMAG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KL++ G R+AIC+Q+E P KK LV+R + LVTPG D +L Sbjct: 69 FPHHALDTYLPKLVRAGKRVAICDQLEDPKMTKK-----LVKRGITELVTPGVSINDNVL 123 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 + ++N+L AV + +A++DISTG F + D + + P+EI+F + Sbjct: 124 NYKENNFLAAVHFGKASCGVAFLDISTGEFLTAEGPFDYIDKLLNNFAPKEILFERGK-- 181 Query: 206 HAEYKSLFE-TLGN--VAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 + +FE GN + F + + ++ ++ + FG A+ Sbjct: 182 ----RLMFEGNFGNKFFTFELDDWVFTETTAREKLLKHFETKNLKGFGVEHLKNGIIASG 237 Query: 263 AI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 AI Y+ TQ I R + + +D +LE++ ++ SLL ID + Sbjct: 238 AILQYLTMTQHTQIGHITSLARIEEDKYVRLDKFTVRSLELIGNMNDGG-SSLLNVIDRT 296 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 I+ G RL + PL D IN RL+ + +F + P I++ L D+ R +S++ Sbjct: 297 ISPMGARLLKRWMVFPLKDEKPINERLNVVEYFFRQPDFKELIEEQLHLIGDLERIISKV 356 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 +GR P+++ ++ +++ I ++ D L E+L L S+ ++ + + Sbjct: 357 AVGRVSPREVVQLKVALQAIEPIKQACMEAD-NASLNRIGEQLN-LCISIRDRIAKEIKN 414 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 D P GG ++DG +A LDE R + K + +Q + +EET I +LK+ +NN GY Sbjct: 415 DPPLLINKGGVIQDGVNADLDELRQISYSGKDYLLKIQQRESEETGIPSLKVAYNNVFGY 474 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IEV + + KD + +I +QT+ N R+ T EL + E +I A + L++E + Sbjct: 475 YIEVRN-----VHKD-KVPPEWIRKQTLVNAERYITQELKEYEEKILGAEDKILVLETQL 528 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 + L A++E + + IA +D ++ A +A+E Y RPII+++ ++ GRHP+ Sbjct: 529 YTDLVQALMEFIPQIQINANQIARLDCLLSFANVARENRYIRPIIEDNDVLDIRQGRHPV 588 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 +EK L + +IAND L D N+ ++ ++TGPNM GKS LRQ ALI ++AQ+GS Sbjct: 589 IEKQLP--IGEKYIANDVML----DSNTQQIIIITGPNMAGKSALLRQTALITLLAQIGS 642 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA AHIG+VDK+F+RVG++DN++ G STFMVEM E A ILN +++S V+ DE+GRG Sbjct: 643 FVPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNVSSRSLVLFDELGRG 702 Query: 742 TATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 T+T DG+SIAWA +EY+HE + R L ATH+HEL ++ KS KR N + V + + + Sbjct: 703 TSTYDGISIAWAIVEYIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEVDNKV 762 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 IFL K+ G ++HS+GI V K+AG+P +++ RA +ILK E N++ P + Sbjct: 763 IFLRKLERGGSEHSFGIHVAKMAGMPKSIVKRANEILKQLES---DNRQQGIAGKPLAEV 819 Query: 860 KESKNNLSKNDKLFVEKIKC------LNLD--EMSPLTALKTLYAVK 898 E++ + + + I C LNLD ++P+ AL L +K Sbjct: 820 SENRGGMQLSFFQLDDPILCQIRDEILNLDVNNLTPIEALNKLNDIK 866 >gi|18310137|ref|NP_562071.1| DNA mismatch repair protein [Clostridium perfringens str. 13] gi|44888232|sp|Q8XL87|MUTS_CLOPE RecName: Full=DNA mismatch repair protein mutS gi|18144816|dbj|BAB80861.1| DNA mismatch repair protein [Clostridium perfringens str. 13] Length = 909 Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust. Identities = 302/831 (36%), Positives = 475/831 (57%), Gaps = 35/831 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY EIK D ++F+R+GDFYE+FF+DA A+R L + LT R L K PMCG Sbjct: 4 TPMMRQYFEIKENYKDCILFFRLGDFYEMFFEDAETAARELELVLTGRDCGLEKRAPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H +N YI +L+ G+++AICEQ+E P AK +V+R+V++++TPGT T+ + Sbjct: 64 IPFHASNSYIGRLVAKGYKVAICEQVEDPKVAK-----GIVKRDVIKVITPGTYTDSSFV 118 Query: 146 SPTDSNYLMAVARI--RTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREIIFSE 201 T +NY+M + R ++A DISTG F + ++ ++ +I + +P+EII + Sbjct: 119 EETKNNYIMTIYSDLERNRCSLAITDISTGDFLATEGELEKGVILDEISKFNPKEIILLD 178 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 L K + T + +P +F E + + N + S S + K ++ Sbjct: 179 S-LDQELIKDITLTTPALISRKPIEYF-----EEKFEEVLNAQFGEKSNSLSLMVKKSSN 232 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 A + YI TQ ++ I E + + ID ++R NLE+ L S++ SLL +D Sbjct: 233 ALVKYILDTQKISLTNINDIEVYSLVDFMTIDLSSRRNLELTENLREKSKKGSLLWVLDK 292 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G R+ I PL + KI RL+++ + L + +++ L D+ R L + Sbjct: 293 TETSMGSRMLRRWIEEPLVNKEKITLRLNAVEELFNDLSLNDSLKEALHDIYDIERILGK 352 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + KD+ ++ I N+ + ++N LR L L E S+ Sbjct: 353 ISNKNANAKDLIALKTSIGKIPNVKGI-IENCTSSLLRNYHHNLDDLRDIYELLEKSIKE 411 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D T K DG ++DG ++ +DE R + K I+SL+ + E T IK+LK+ N G Sbjct: 412 DPSLTLK-DGDLIKDGFNSEIDELRLAKTNGKDWISSLENREREFTGIKSLKVGFNKVFG 470 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IE++ ++ S + + R+I +QT++N RF T EL ++E ++ A+ +E + Sbjct: 471 YYIEISKANYSSI-----PEGRYIRKQTLANAERFITPELKEIEEKLLGASEKLCSLEYD 525 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F + N + + L +++IA +D LA +A E ++ +P I+ +++GRHP Sbjct: 526 IFLDIRNEVENHIDRLKTTAKIIAELDCISNLAFVALENDFIKPEINEDGETKIENGRHP 585 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + + FI ND + +K+ +L ++TGPNM GKST++RQ A+I +M Q+G Sbjct: 586 VVEKVIPKGE---FIPNDTII----NKDDNQLLIITGPNMAGKSTYMRQVAIITLMCQIG 638 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPAS A+I +VDK+F+R+G++D+LA G+STFMVEM E ++IL AT S V+LDE+GR Sbjct: 639 SFVPASKANISVVDKIFTRIGASDDLAGGKSTFMVEMWEVSNILKNATENSLVLLDEVGR 698 Query: 741 GTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GT+T DGLSIAW+ IEY+ + RC+ L ATH+HELT L + N ++ V + + Sbjct: 699 GTSTYDGLSIAWSVIEYICKNKNLRCKTLFATHYHELTKLEGEIHGVRNYSVAVKEVDNN 758 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 IIFL K+I G AD SYGI+V KLAG+P+ VI+RA +IL EKL + KD Sbjct: 759 IIFLRKIIEGGADQSYGIEVAKLAGIPDDVINRAKEIL---EKLEMESSKD 806 >gi|160884834|ref|ZP_02065837.1| hypothetical protein BACOVA_02824 [Bacteroides ovatus ATCC 8483] gi|156109869|gb|EDO11614.1| hypothetical protein BACOVA_02824 [Bacteroides ovatus ATCC 8483] Length = 898 Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust. Identities = 304/887 (34%), Positives = 493/887 (55%), Gaps = 43/887 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+Q++++K+ +PD+++ +R GDFYE + DA++A+ LGITLTKR GK I M G Sbjct: 35 TPMMKQFLDLKAKHPDAVMLFRCGDFYETYSTDAIVAAEILGITLTKRANGKGKTIEMAG 94 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KL++ G R+AIC+Q+E P KK LV+R + LVTPG D +L Sbjct: 95 FPHHALDTYLPKLVRAGKRVAICDQLEDPKMTKK-----LVKRGITELVTPGVSINDNVL 149 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 + ++N+L AV + +A++DISTG F + D + + P+EI+F + Sbjct: 150 NYKENNFLAAVHFGKASCGVAFLDISTGEFLTAEGPFDYIDKLLNNFAPKEILFERGK-- 207 Query: 206 HAEYKSLFE-TLGN--VAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 + +FE GN + F + + ++ ++ + FG A+ Sbjct: 208 ----RLMFEGNFGNKFFTFELDDWVFTETTAREKLLKHFETKNLKGFGVEHLKNGIIASG 263 Query: 263 AI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 AI Y+ TQ I R + + +D +LE++ ++ SLL ID + Sbjct: 264 AILQYLTMTQHTQIGHITSLARIEEDKYVRLDKFTVRSLELIGNMNDGG-SSLLNVIDRT 322 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 I+ G RL + PL D IN RL+ + +F + P I++ L D+ R +S++ Sbjct: 323 ISPMGARLLKRWMVFPLKDEKPINERLNVVEYFFRQPDFKELIEEQLHLIGDLERIISKV 382 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 +GR P+++ ++ +++ I ++ D L E+L L S+ ++ + + Sbjct: 383 AVGRVSPREVVQLKVALQAIEPIKQACMEAD-NASLNRIGEQLN-LCISIRDRIAKEIKN 440 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 D P GG ++DG +A LDE R + K + +Q + +EET I +LK+ +NN GY Sbjct: 441 DPPLLINKGGVIQDGVNADLDELRQISYSGKDYLLKIQQRESEETGIPSLKVAYNNVFGY 500 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IEV + + K+ +I +QT+ N R+ T EL + E +I A + L++E + Sbjct: 501 YIEVRNVHKDKVPKE------WIRKQTLVNAERYITQELKEYEEKILGAEDKILILETQL 554 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 + L A++E + + IA +D ++ A +A+E Y RPII+++ ++ GRHP+ Sbjct: 555 YTDLVQALMEFIPQIQINANQIARLDCLLSFANVARENRYIRPIIEDNDVLDIRQGRHPV 614 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 +EK L + +IAND L D ++ ++ ++TGPNM GKS LRQ ALI ++AQ+GS Sbjct: 615 IEKQLP--IGEKYIANDVML----DSDTQQIIIITGPNMAGKSALLRQTALITLLAQIGS 668 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA AHIG+VDK+F+RVG++DN++ G STFMVEM E A ILN +++S V+ DE+GRG Sbjct: 669 FVPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNVSSRSLVLFDELGRG 728 Query: 742 TATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 T+T DG+SIAWA +EY+HE + R L ATH+HEL ++ KS KR N + V + + + Sbjct: 729 TSTYDGISIAWAIVEYIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEVDNKV 788 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 IFL K+ G ++HS+GI V K+AG+P +++ RA +ILK E N++ P + Sbjct: 789 IFLRKLERGGSEHSFGIHVAKMAGMPKSIVKRANEILKQLES---DNRQQGIAGKPLAEV 845 Query: 860 KESKNNLSKNDKLFVEKIKC------LNLD--EMSPLTALKTLYAVK 898 E++ + + + I C LNLD ++P+ AL L +K Sbjct: 846 SENRGGMQLSFFQLDDPILCQIRDEILNLDVNNLTPIEALNKLNDIK 892 >gi|190411095|gb|ACE78302.1| truncated MutS [Vibrio parahaemolyticus] Length = 836 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 303/873 (34%), Positives = 480/873 (54%), Gaps = 46/873 (5%) Query: 31 QYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHT 90 QY+++K+ NP+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IPM GVP H Sbjct: 1 QYLKLKAENPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGSSAGEPIPMAGVPFHA 60 Query: 91 ANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDS 150 Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+T++ LLS Sbjct: 61 VEGYLAKLVQLGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTVTDEALLSERLD 115 Query: 151 NYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKELSHAEY 209 N + A+ ++ A +D+++G F+++ + +++++ R PRE++F E ++ Sbjct: 116 NLIAAIYHHNGKFGYATLDVTSGRFQLTEPETEEAMMAELQRTAPRELLFPE------DF 169 Query: 210 KSLF-ETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAISYI 267 + ++ + N +P F+ ++ ++ + + FG + + AA I Y+ Sbjct: 170 EPVYLMSNRNGNRRRPVWEFELDTAKQQLNQQFGTRDLVGFGVEHASLGLCAAGCLIQYV 229 Query: 268 KKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGG 327 K TQ P I + ++ +D+A R NLEI + L+G + +L +D+ T G Sbjct: 230 KDTQRTALPHIRSLTFDRQDHSVILDAATRRNLEITQNLAGGTDNTLAAVLDHCSTPMGS 289 Query: 328 RLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGE 387 R+ + P+ +N RLD+I I++ L +Q LK D+ R L+RL + Sbjct: 290 RMLKRWLHQPMRCIDTLNNRLDAIGE-IKDQGLFTDLQPTLKQIGDIERILARLALRSAR 348 Query: 388 PKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT---LSSMLSDDLP 444 P+D+A +R ++ + +L P + KL + +++ L + ++ P Sbjct: 349 PRDMARLRHAMQQLPELESLTASLTHP-----YLVKLAQFAAPIDEVCELLERAIKENPP 403 Query: 445 TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIE 504 RDGG + +G + LDE R L D + + L+ E I LK+ +N G+FI+ Sbjct: 404 VVIRDGGVIAEGYNEELDEWRKLADGATEYLEKLEADERERHGIDTLKVGYNAVHGFFIQ 463 Query: 505 VTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEI 564 V+ + ++ ++ RQT+ N R+ EL + E+++ N+ + AL +E + +E Sbjct: 464 VSRGQSHLVPP------HYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALALEKKLWEE 517 Query: 565 LSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEK 624 L + ++ E + N + ++ +D+ LA A +YCRP + ++ GRHP+VE Sbjct: 518 LFDLLMPHLEQMQNLASAVSQMDVLQNLAERADSLDYCRPTLVKDAGIHIQAGRHPVVE- 576 Query: 625 TLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684 Q +S PFIAN +LS S K+ ++TGPNMGGKST++RQ ALI +MA +GSYVP Sbjct: 577 ---QVTSDPFIANPIELS-----PSRKMLIITGPNMGGKSTYMRQTALIALMAHIGSYVP 628 Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744 A A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V++DEIGRGT+T Sbjct: 629 AESAQIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLVLMDEIGRGTST 688 Query: 745 LDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHK 804 DGLS+AWA+ E+L L ATH+ ELT+L L N L + + I F+H Sbjct: 689 YDGLSLAWASAEWLATQIGAMTLFATHYFELTELPNLLPNLANVHLDAVEHGDSIAFMHA 748 Query: 805 VIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKN 864 V G A SYG+ V LAG+P TVI A L E+L + P T + N Sbjct: 749 VQEGAASKSYGLAVAGLAGVPKTVIKNARTKLSQLEQLGQASDS------PRPSTVDVAN 802 Query: 865 NLS--KNDKLFVEKIKCLNLDEMSPLTALKTLY 895 LS + + ++ D+++P AL+ LY Sbjct: 803 QLSLIPEPSEIEQALSNIDPDDLTPRQALEELY 835 >gi|62185403|ref|YP_220188.1| DNA mismatch repair protein [Chlamydophila abortus S26/3] gi|81312447|sp|Q5L554|MUTS_CHLAB RecName: Full=DNA mismatch repair protein mutS gi|62148470|emb|CAH64240.1| putative DNA mismatch repair protein [Chlamydophila abortus S26/3] Length = 826 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 297/828 (35%), Positives = 473/828 (57%), Gaps = 34/828 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K +TPMM+Q+ + K +SL+ +RMGDFYE F+DDA++ S+ L ITLT+R + IP Sbjct: 4 KKTTPMMKQWHQCKEKAGESLLLFRMGDFYEAFYDDAIVLSQNLDITLTQR-----QGIP 58 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M G+PV T N YI +L+ G ++A+ EQ++ + K G + R + R +TPGTL Sbjct: 59 MSGIPVSTINGYIDRLVSKGFKVAVAEQLDEAQDNK--GKSEPLSRELQRFITPGTLLSS 116 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSE 201 LL +NY++++ R+ + +A +D STG F + N L+ +I R+ P EI+ + Sbjct: 117 SLLPEKANNYIVSINRVGALFGLACLDFSTGSFLLQEYDNMKDLVDEICRLAPTEILSCD 176 Query: 202 KELS-HAEY-KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK-T 258 K HA+ + + + L + F+H + +++ +++++++D FG V Sbjct: 177 KFYKKHADIIEQIQQHLKLTLSTYADWAFEHQFATQKLSLHFHVSSLDGFGLKGLVPAIN 236 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR-EQSLLKT 317 +A A +SY++ ++ I P+ + Q L ID+A++ NLE+L + + + SLL Sbjct: 237 SAGALLSYLQDKLLLPVEHISIPKTQGNQKHLLIDTASQVNLELLTPIHDPQGKSSLLHV 296 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 ++ + T GGRL + +P D +I R D++ F + L ++ +L D+ R Sbjct: 297 MERTSTPMGGRLLRNTLVNPFYDQKEILLRQDAVEFLLDRSELRKNLKSLLSQVRDLERL 356 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP---QSLEKT 434 +++ PKDI ++RD + + I + + LP+ +G LP SL + Sbjct: 357 TTKITTSLAGPKDIGMLRDSLNASIRVCEVLSPLPLPKFFQGRF----TLPIGLTSLSEL 412 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 LS L +LP +G D L R ++ SK + Q ++T +K LK+ Sbjct: 413 LSRALLGELPLRISEGNIFCDNHHPDLQRLRYTKEHSKEWLWQYQETIRQQTGVKKLKVC 472 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 ++ LGY+IEV+S A +L K+ FI RQ+ + RFTT +L + ++ + N ++ Sbjct: 473 YSQALGYYIEVSSDFAPLLPKE------FIRRQSRLHAERFTTEKLQEFQDDMLNISDKL 526 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 +E + F+ L I++Q E + + SQVIA ID ++L+ LA E NYCRPI+D S + + Sbjct: 527 QTLETQLFKDLCAQILQQREEILSLSQVIADIDYILSLSDLAAEYNYCRPIVDTSDSLSI 586 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 G HP+ + L + + FI ND + ++ L+TGPNM GKST++RQ AL+V Sbjct: 587 SGGIHPVAQTLLDKGT---FIPNDIKMH----STRTRMILITGPNMAGKSTYIRQIALLV 639 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMAQMGS++PA AHIG++DK+F+R+G+ DNL+ G STFMVEM ETA+IL+ AT++S VI Sbjct: 640 IMAQMGSFIPAKSAHIGMIDKIFTRIGAGDNLSKGMSTFMVEMAETANILHNATDRSLVI 699 Query: 735 LDEIGRGTATLDGLSIAWATIEYL--HETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 LDE+GRGT+T DGL+IA + +EYL E + + L ATH+ ELTDL N V Sbjct: 700 LDEVGRGTSTYDGLAIAQSVVEYLLFTEGKKAKTLFATHYKELTDLENHCPHVENFHASV 759 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 ++ +FL++++ G + S+GI V KLAG P VISRA IL+ E Sbjct: 760 KENGGQPVFLYEILKGHSQKSFGIHVAKLAGFPLCVISRAQQILRQLE 807 >gi|254518944|ref|ZP_05131000.1| DNA mismatch repair protein mutS [Clostridium sp. 7_2_43FAA] gi|226912693|gb|EEH97894.1| DNA mismatch repair protein mutS [Clostridium sp. 7_2_43FAA] Length = 933 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 302/845 (35%), Positives = 485/845 (57%), Gaps = 60/845 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY EIK D ++F+R+GDFYE+FF+DA +ASR L + LT R L + PMCG Sbjct: 3 TPMMRQYFEIKENYKDCILFFRLGDFYEMFFEDAKIASRELELVLTGRDCGLEERAPMCG 62 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H A+ YI +L+ G+++AI EQ+E AK +V+R+V++++TPGT E+ Sbjct: 63 IPFHAASSYIARLVNKGYKVAIGEQVEDVSVAK-----GIVKRDVIKVITPGTYIENTED 117 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREII----F 199 S + YLM + + +A DISTG FK++ T+ L+ +I +I P+EII Sbjct: 118 SEYKNTYLMCIVEDNGYYGLASSDISTGEFKVTSFTAIKASLLDEITKIAPKEIIVDINI 177 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 S++ LS ++ + + + ++ E + + + + + + KT Sbjct: 178 SDELLSE------ITSISSALITKRDLSKSICTEEELLEQFSEVCITN----LNDLSKTV 227 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTI 318 + A + YI TQ + I E DI + + ID +R NLE+ L S++ SL+ + Sbjct: 228 SKALLKYIYDTQKMTLTNINLLEYYDIINYMTIDGNSRRNLELTENLKEKSKKGSLIWVL 287 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D + T GGR + I PL ++I RL+ + N ++ +LK D+ R + Sbjct: 288 DKTATSMGGRAIRKWIEEPLIIKSEIEKRLEGVEELYNNAYFNEDLRSLLKEIYDIERIV 347 Query: 379 SRLKIGRGEPKDIAVIR------DGIRSGI-----NILNLFLKNDLPEELRGAVEKLKKL 427 ++ KD+ ++ GI+S + NIL + K DL E + +K+L Sbjct: 348 GKISNKNANAKDLISLKCSLEKLPGIKSHLSEASSNILKEWYK-DLDE-----LTDIKEL 401 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 LS+ + DD ++G ++DG + +D R+ + K IA+L+ + + T Sbjct: 402 -------LSNSILDDPSIALKEGNIIKDGYNEEVDSLRTAKLHGKEWIAALENRERDFTG 454 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 I++LK+ +N GY+IE++ ++ S + + R+I +QT++N RF T EL ++E++I Sbjct: 455 IRSLKVGYNKVFGYYIEISKANYSSI-----PEGRYIRKQTLANAERFITQELKEMEDKI 509 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 A + +E + F + AI ++ L ++++I +D L+++A E +Y +P I+ Sbjct: 510 LGAEEKLVSLEYDLFIEIREAIEKEIARLKQSARIIGNLDALSTLSLIAVENDYVKPSIN 569 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 + +GRHP+VEK + + F++ND L + N +L L+TGPNM GKST++ Sbjct: 570 EDGIIEINEGRHPVVEKVIGKGE---FVSNDTTL----NSNDNRLLLITGPNMAGKSTYM 622 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ ALI +MAQ+GS+VPA A+I I DK+F+R+G++D+LA G+STFMVEM E ++IL A Sbjct: 623 RQVALITLMAQIGSFVPAKSANISICDKIFTRIGASDDLAGGKSTFMVEMWEVSNILKNA 682 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRF 785 T++S V+LDE+GRGT+T DGLSIAW+ IEY+ + N +C+ L ATH+HELT L ++ Sbjct: 683 TSKSLVLLDEVGRGTSTYDGLSIAWSVIEYISKNNNLKCKTLFATHYHELTKLEGVIEGV 742 Query: 786 HNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH 845 N ++ VS+ ++ IIFL K++ G AD SYGI+V KLAGLP VI RA +IL + E Sbjct: 743 KNYSVAVSEIDDNIIFLRKIVEGGADQSYGIEVAKLAGLPTQVIDRAKEILSSLENTSGS 802 Query: 846 NQKDM 850 N D+ Sbjct: 803 NSLDV 807 >gi|303233668|ref|ZP_07320322.1| DNA mismatch repair protein MutS [Finegoldia magna BVS033A4] gi|302495102|gb|EFL54854.1| DNA mismatch repair protein MutS [Finegoldia magna BVS033A4] Length = 856 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 317/882 (35%), Positives = 497/882 (56%), Gaps = 54/882 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY EIK N D ++F+R+GDFYE+FFDDAL+AS+ L I LT+R K PMCG Sbjct: 4 TPMIKQYKEIKEQNKDCILFFRLGDFYEMFFDDALIASKELEIVLTQRDCGENKKCPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H ++ YI KL+ G+++AICEQ+E P + K LV+R ++++ TP T+ E++ Sbjct: 64 IPYHVSDVYINKLVSKGYKVAICEQLEDP-----KLVKGLVKRGIIKIYTPATVIENENS 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI----SDIMRIDPREIIFSE 201 + NYLM++++ E AI++IDISTG + + D + ++I +I P+EIIF++ Sbjct: 119 DTGNFNYLMSISKKSNEVAISYIDISTGDVSYTNTTSDDIYKIIENEISKITPKEIIFND 178 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 E S +++ V N S+I Y+ T S+ A Sbjct: 179 HEFSTNSLETIASKFSIVLTTVNNGTDSIDFINSKIT--YDNTN-------SETTNICVA 229 Query: 262 AAISYIKKTQ--MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTI 318 + Y+ + Q +V+ I + I + IDS + NLEI + L + S+ SL + Sbjct: 230 NLLKYVFRYQDDLVH---INSSRKYYINEFMEIDSNSVINLEIQKNLYTNSKNGSLFGVL 286 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 +++ T G RL + PL D +I R + + ++ L+ ++ L D+ R L Sbjct: 287 NHTKTSMGSRLLHSYLERPLMDKEEILIRQNRVEEIFEDYELLVNLENCLDGIYDLDRLL 346 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 ++L KD+ ++ I ++ NL N +L G EKL L + + ++ Sbjct: 347 AKLSYKSANAKDLIALKVSIEKIPHLKNLLNCNKKNIQLIG--EKLDDL-RDIYDLINKS 403 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + DD P +G ++ LD+ R R K + ++ + IKNLKI N Sbjct: 404 IVDDPPVILTEGNLIKPNFSNELDQLRYNRVNGKNELVEYEMSEKDRLGIKNLKIVFNKK 463 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 LGYFI+VT S+ + + +D E RQT++N +RF T EL +E++I ++ + +E Sbjct: 464 LGYFIDVTKSNLNKVGEDYEK------RQTLTNSSRFKTKELEAIESKILDSEDEIFELE 517 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + FE + I+E + ++ +IAIID+S +LA A NY +P I+ V + R Sbjct: 518 YKIFEDIRKIILENLSRIKKSADLIAIIDVSNSLAKCAYLNNYIKPDINTYGLIDVLESR 577 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGK--LWLLTGPNMGGKSTFLRQNALIVIM 676 HPIVE ++ Q FI ND + SGK + L+TGPNM GKST+LRQ ALI I+ Sbjct: 578 HPIVELSVGQSE---FITNDILIG------SGKNDIQLITGPNMSGKSTYLRQVALICIL 628 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 Q+GS+VPA+ A+I IVDK+F+R+GS+DNL G STFMVEM E ++I+ AT+ S ++LD Sbjct: 629 NQIGSFVPATKANISIVDKIFTRIGSSDNLFKGESTFMVEMKEMSNIIKYATSNSLLVLD 688 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DGLS+AWA +EY+ + + + L ATH+HELT+L K L N + + ++N Sbjct: 689 EIGRGTSTFDGLSLAWAIVEYISKNIKAKTLFATHYHELTELEKKLDNLINMKVDIKETN 748 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP- 855 + IIFL K+ G D SYGI+V +LAG+P T+I RA ILK +K +D ++ +P Sbjct: 749 DSIIFLRKITRGSTDKSYGIEVAELAGMPKTLIKRAKSILKEIDK------EDTKIDFPI 802 Query: 856 ---EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 +Q + + K F ++IK +N++E++P+ +L+ L Sbjct: 803 ADFAVQNEMEDDKNIHELKDFKDEIKNINVNEITPIQSLQLL 844 >gi|126454533|ref|YP_001066865.1| DNA mismatch repair protein [Burkholderia pseudomallei 1106a] gi|242315681|ref|ZP_04814697.1| DNA mismatch repair protein MutS [Burkholderia pseudomallei 1106b] gi|126228175|gb|ABN91715.1| DNA mismatch repair protein MutS [Burkholderia pseudomallei 1106a] gi|242138920|gb|EES25322.1| DNA mismatch repair protein MutS [Burkholderia pseudomallei 1106b] Length = 939 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 307/883 (34%), Positives = 462/883 (52%), Gaps = 40/883 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ IKS +PD+LVFYRMGDFYELFF+DA A+R L +TLT+RG G I M G Sbjct: 69 TPMMQQYLRIKSEHPDTLVFYRMGDFYELFFEDAEKAARLLDLTLTQRGASAGTPIKMAG 128 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H Y+ KL+K G AICEQI P +K V R VVR+VTPGTLT+ LL Sbjct: 129 VPHHAVEQYLAKLVKFGESAAICEQIGDPAT-----SKGPVERKVVRVVTPGTLTDAALL 183 Query: 146 SPTDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 S +L+A+ + + +AW+++++G +++ D+L + + RI P EI+ Sbjct: 184 SDKSDVFLLALCVGHNKRGVASNIGLAWLNLASGALRLAELAPDQLGAALERIRPAEILA 243 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 ++ + +S+ +G + P FD + R+ D + ++D FG+ + Sbjct: 244 ADGTI-----ESVPAGMGAITRV-PAWHFDIASGTQRLCDQLEVASLDGFGAQALTSANG 297 Query: 260 AAAAIS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA A+ Y TQ + + E+ + +D + R NLE+ TL G+ +L + Sbjct: 298 AAGALLIYAAATQGQQLRHVRSLKVENESEYIGLDPSTRRNLELTETLRGTESPTLYSLL 357 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP--ILINPIQKILKSSPDVPR 376 D T G RL + P S R +I + P ++ ++ L+ DV R Sbjct: 358 DTCCTAMGSRLLRHWLHHPPRASVAAQARHQAIGALLDAPPNAGLDSLRSALRQIADVER 417 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 RL + P+D++ +RD + + + G +E + P L+ Sbjct: 418 ITGRLALLSARPRDLSSLRDTFAALPALRERVAEIASNAAALGRLEAALEPPPGCLDLLT 477 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 ++ + RDGG + G DA LDE R + + + + L+ + T I NL++++N Sbjct: 478 RAIAAEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLETRERARTGISNLRVEYN 537 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 G++IEVT + D + RQT+ N R+ T EL E++ +A AL Sbjct: 538 KVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTFEDKALSAQERALA 591 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 E ++ + A++ E + +A +D+ A A A+ ++ P + + Sbjct: 592 RERALYDGVLQALLPHIEGCQRVASGLAELDLLAAFAERARTLDWVAPEFTDEIGIEIDQ 651 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE ++Q FIANDC L+ KL L+TGPNMGGKSTF+RQ ALI +M Sbjct: 652 GRHPVVEAQVEQ-----FIANDCALN-----PERKLLLITGPNMGGKSTFMRQTALIALM 701 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+ILN AT S V++D Sbjct: 702 AYVGSYVPAKAARFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILNDATPHSLVLMD 761 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DGL++AWA +L NRC L ATH+ ELT L + N L + Sbjct: 762 EIGRGTSTFDGLALAWAIARHLLSHNRCYTLFATHYFELTQLPAEFPQAANVHLSAVEHG 821 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN---QKDMRLY 853 GI+FLH V G A+ SYG+QV +LAG+P VI A L+ E+ Q D+ Sbjct: 822 HGIVFLHAVEEGPANQSYGLQVAQLAGVPAPVIRAARKHLEHLEQQSAAQATPQLDLFAA 881 Query: 854 YPEIQTKE-SKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 P + E ++ + +E++ L+ D++ P AL LY Sbjct: 882 PPVVDEPECNEPPAAATPHPALERLLELDPDDLKPRDALDLLY 924 >gi|110799241|ref|YP_695804.1| DNA mismatch repair protein MutS [Clostridium perfringens ATCC 13124] gi|123049875|sp|Q0TRD6|MUTS_CLOP1 RecName: Full=DNA mismatch repair protein mutS gi|110673888|gb|ABG82875.1| DNA mismatch repair protein MutS [Clostridium perfringens ATCC 13124] Length = 910 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 297/836 (35%), Positives = 478/836 (57%), Gaps = 36/836 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY EIK D ++F+R+GDFYE+FF+DA A+R L + LT R L K PMCG Sbjct: 4 TPMMRQYFEIKENYKDCILFFRLGDFYEMFFEDAETAARELELVLTGRDCGLEKRAPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H +N YI +L+ G+++AICEQ+E P AK +V+R+V++++TPGT T+ + Sbjct: 64 IPFHASNSYIGRLVAKGYKVAICEQVEDPKFAK-----GIVKRDVIKVITPGTYTDSSFV 118 Query: 146 SPTDSNYLMAVARI--RTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREIIFSE 201 T +NY+M + R ++A DISTG F + ++ ++ +I + +P+EII + Sbjct: 119 EETKNNYIMTIYADLERNRCSLAITDISTGDFLATEGELEKGVILDEISKFNPKEIILLD 178 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 L K + T + +P +F+ + E N + S S + K ++ Sbjct: 179 S-LDQELIKDITLTTPALISRKPIEYFEENFEE-----VLNNQFGEKSNSLSLMVKKSSN 232 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 A + YI TQ ++ I E + + ID ++R NLE+ L S++ SLL +D Sbjct: 233 ALVKYILDTQKISLTNINDIEVYSLVDFMTIDLSSRRNLELTENLREKSKKGSLLWVLDK 292 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G R+ I PL + KI RL+++ + L + +++ L D+ R L + Sbjct: 293 TETSMGSRMLRRWIEEPLVNKEKITLRLNAVEELFNDLSLNDSLKEALHDIYDIERILGK 352 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 + KD+ ++ I N+ + + L + ++ L+ + LEK++ Sbjct: 353 ISNKNANAKDLIALKTSIGKIPNVKGIIENCTSSLLKNYHHNLDDLRDIYDLLEKSIK-- 410 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 +D +DG ++DG + +DE R + K I+SL+ + E T IK+LK+ N Sbjct: 411 --EDPSLTLKDGDLIKDGFNGEIDELRLAKTNGKDWISSLENREREFTGIKSLKVGFNKV 468 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IE++ ++ S + + R+I +QT++N RF T EL ++E ++ A+ +E Sbjct: 469 FGYYIEISKANYSSI-----PEGRYIRKQTLANAERFITPELKEIEEKLLGASEKLCSLE 523 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F + N + + L +++IA +D LA +A E ++ +P I+ +++GR Sbjct: 524 YDIFLDIRNEVENHIDRLKTTAKIIAELDCISNLAFVALENDFIKPEINEDGETKIENGR 583 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VEK + + FI ND + +K+ +L ++TGPNM GKST++RQ A+I +M Q Sbjct: 584 HPVVEKVIPKGE---FIPNDTII----NKDDNQLLIITGPNMAGKSTYMRQVAIITLMCQ 636 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPAS A+I +VDK+F+R+G++D+LA G+STFMVEM E ++IL AT S V+LDE+ Sbjct: 637 IGSFVPASKANISVVDKIFTRIGASDDLAGGKSTFMVEMWEVSNILKNATENSLVLLDEV 696 Query: 739 GRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 GRGT+T DGLSIAW+ IEY+ + RC+ L ATH+HELT L + N ++ V + + Sbjct: 697 GRGTSTYDGLSIAWSVIEYICKNKNLRCKTLFATHYHELTKLEGEIHGVRNYSVAVKEVD 756 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 IIFL K+I G AD SYGI+V KLAG+P+ VI+RA +IL+T E + D+ L Sbjct: 757 NNIIFLRKIIEGGADQSYGIEVAKLAGIPDEVINRAKEILETLEMESSKDNLDLAL 812 >gi|47095354|ref|ZP_00232964.1| DNA mismatch repair protein MutS [Listeria monocytogenes str. 1/2a F6854] gi|254898431|ref|ZP_05258355.1| DNA mismatch repair protein MutS [Listeria monocytogenes J0161] gi|254912078|ref|ZP_05262090.1| DNA mismatch repair protein MutS [Listeria monocytogenes J2818] gi|254936405|ref|ZP_05268102.1| DNA mismatch repair protein MutS [Listeria monocytogenes F6900] gi|47016175|gb|EAL07098.1| DNA mismatch repair protein MutS [Listeria monocytogenes str. 1/2a F6854] gi|258608997|gb|EEW21605.1| DNA mismatch repair protein MutS [Listeria monocytogenes F6900] gi|293590046|gb|EFF98380.1| DNA mismatch repair protein MutS [Listeria monocytogenes J2818] Length = 860 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 315/894 (35%), Positives = 499/894 (55%), Gaps = 61/894 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+EIK D+ +F+R+GDFYE+FF+DAL AS+ L ITLT R + IPMCG Sbjct: 5 TPMIKQYLEIKDKYQDAFLFFRLGDFYEMFFEDALNASQILEITLTGREGGTKEKIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A+ YI LI+ G+++AICEQ+E P + K +V+R VV+L++PGT+ +++ L Sbjct: 65 VPYHSASGYIDTLIEKGYKVAICEQVEDP-----KTTKGMVKREVVQLISPGTVMDERGL 119 Query: 146 SPTDSNYLMAVARIR-TEWAIAWIDISTGIFK--ISTSNHDRLISDIMRIDPREIIFSEK 202 ++NY+ ++ E+ A+ D+STG K + ++ DRLI+++ + RE+I S Sbjct: 120 KAKENNYIASLYCYEGKEYGFAYSDLSTGELKSTVIEASEDRLINELTTLSTRELIVSAS 179 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 E E L +V Q + F S+ E N V S S EK A Sbjct: 180 EK---------EVLSDVMKEQLGLTF--SVHEEDTIPRENEKLVTRHMSLS--EKRAIGK 226 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDYS 321 + Y+K+TQ + + + + + +D ++ NLE+ ++ G R+ +LL +D + Sbjct: 227 LLHYLKETQKRDLGHLQQAVHYETSNYMKMDYYSKRNLELADSIRGKGRQGTLLWLLDNT 286 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSI-----NFFIQNPILINPIQKILKSSPDVPR 376 T GGR+ + I PL D KI R + + NFF + ++ N LK+ D+ R Sbjct: 287 QTAMGGRMLKQWIDRPLIDRNKIIERQNDVSELMANFFERLELVEN-----LKNVYDLER 341 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R+ G +D+ +R+ + I L + + EL ++ ++L + LE+ Sbjct: 342 LAGRVAYGNVNARDLIQLRNSLYQIPRIRATLLSMNSKSLTELANQLDPCEELTEKLEEA 401 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + D P R+GG ++DG ++ LD R K IA L+ K E T IK +K+ Sbjct: 402 IM----DSAPISIREGGIIKDGYNSQLDTYRDASRNGKTWIAELERKERELTGIKTMKVG 457 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N GY+IEVT ++ +L + R+ +QT++N R+ T EL + E I +A + Sbjct: 458 FNRVFGYYIEVTRANTHLL-----PEGRYERKQTLTNAERYITPELKEKEKLILDAEEKS 512 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E + F + + + E L ++ ++ ID + A ++++ ++ RP + + V Sbjct: 513 MELEYQLFTEVRELVKDYIERLQKLAKSVSEIDCLQSFADISEKNHFIRPTLSEDGSLHV 572 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 K GRHP+VEK + QS ++ANDCDL D+N ++ L+TGPNM GKST++RQ AL Sbjct: 573 KQGRHPVVEKVMGAQS---YVANDCDL----DRNR-EILLITGPNMSGKSTYMRQVALTA 624 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 I AQ+G +VPA A + I D++F+R+G+AD+L +G+STFMVEM+E + + AT S ++ Sbjct: 625 ICAQVGCFVPAEEATLPIFDQIFTRIGAADDLIAGQSTFMVEMLEARNAIVHATKDSLIL 684 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 DEIGRGTAT DG+++A A IEY+HE + L +TH+HELTDL K L N + + Sbjct: 685 FDEIGRGTATYDGMALAQAIIEYIHENVHAKTLFSTHYHELTDLEKELHGLQNIHVSAVE 744 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE----KLYHHNQKDM 850 N ++FLHK+ G AD SYGI V +LA LP ++I RA IL+ E K+ N K Sbjct: 745 ENGKVVFLHKIKEGPADKSYGIHVAELAELPKSLIERASRILEQLENDDKKIVITNDKQP 804 Query: 851 RLYYPEIQ-----TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + E+Q + K SK KL E I +N+ +M+P+ A+ LY +++ Sbjct: 805 EEIHEEVQLSMFPVEPEKKASSKETKLLKE-IASMNIMQMTPMDAMNKLYELQS 857 >gi|218439471|ref|YP_002377800.1| DNA mismatch repair protein MutS [Cyanothece sp. PCC 7424] gi|218172199|gb|ACK70932.1| DNA mismatch repair protein MutS [Cyanothece sp. PCC 7424] Length = 885 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 308/873 (35%), Positives = 485/873 (55%), Gaps = 43/873 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TPM + Y+E+K P++L+ YR+GDF+E FF DA+ ++ L + LT + G+ +G+ I M Sbjct: 33 TPMYQHYVEVKEQYPNTLLVYRVGDFFECFFQDAVTIAQELELVLTSKDGGREIGR-IAM 91 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H Y + L++ G+ +AIC+Q+E A G +V R + +L+TPGTLT++ Sbjct: 92 TGVPHHALERYSRLLVEKGYAVAICDQVEDSAAAAAAGR--MVERQITKLLTPGTLTDEG 149 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEK 202 +L +NYL AV + W +A+ DISTG F + SNH L +++R+ P EI+ Sbjct: 150 MLQARKNNYLAAVVIAKDHWGLAYADISTGEFLTTQSNHLSSLTLELLRLQPSEILIPTN 209 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVF-------FDHSISES--RIADYYNITTVDTFGS-F 252 E +A P+ F F +++E+ R+ + + +++ G Sbjct: 210 APDLNTLLRPGEKSDYLADCLPDCFCYSLRSQFPFTLNEAKPRLLTTFRVKSLEGLGCEH 269 Query: 253 SQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSRE 311 + AA + YI+ TQ + + + +I L +D +R NLEI +T+ S Sbjct: 270 LPLAIRAAGGLLEYIEDTQKAYQVPLQPLKTYNIAEFLILDYPSRRNLEITQTVRDNSFY 329 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 SLL +D ++T GGR + PL D I R ++I +NP L ++++L+ Sbjct: 330 GSLLWALDRTVTAMGGRALRRWLIEPLLDIKGITARQNTIEELKENPTLRQDLRQLLREI 389 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSL 431 D+ R R+ G +D+ + + ++ L P + L+K+P L Sbjct: 390 YDLERITGRVGAGTANARDLLALAQSLVKLTDLSQLASLGTSP-----YLRALQKVPSEL 444 Query: 432 E---KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 E K + L + P ++GG +RDG + LDE R L ++ ++ +A+L++ + T + Sbjct: 445 EILGKEVIGHLVESPPLHLKEGGVIRDGINFQLDEMRRLYEEDQQWLANLEVTERQRTGV 504 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 NLK+ +N GY++ + S A ++ D +I +QT++N R+ T EL + E+RI Sbjct: 505 SNLKVGYNKTFGYYLSMPRSKAE------QAPDNYIRKQTLTNEERYITPELKERESRIL 558 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 NA + +E E F L + E++ + ++ +A ID+ LA +A Q+YCRP + + Sbjct: 559 NAKDDLNRLEYEIFAGLRTKVAEKAAEIRQVAKAVAAIDVLAGLAEIAVYQDYCRPEMVD 618 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDL-SCPNDKNSGKLWLLTGPNMGGKSTFL 667 + DGRHP+VE++L + F+ N L S ++N L +LTGPN GKS +L Sbjct: 619 GRLIEIVDGRHPVVEQSL---GAGFFVPNSTYLGSLLEEQNYPDLIILTGPNASGKSCYL 675 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ LI +MAQ+GS+VPA A +GI D++F+RVG+ D+LA+G+STFMVEM ETA+ILN A Sbjct: 676 RQVGLIQLMAQIGSFVPAKTAKLGICDRIFTRVGAMDDLATGQSTFMVEMNETANILNHA 735 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 T++S V+LDEIGRGTAT DGLSIAWA EYL + R + ATH+HEL +L+ L N Sbjct: 736 TSRSLVLLDEIGRGTATFDGLSIAWAVAEYLAAEIQSRTIFATHYHELNELASILSNVAN 795 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ 847 + V + IIFLH+V PG AD SYGI+ G+LAGLP VI RA ++ EK H++ Sbjct: 796 YQVTVKEMPNEIIFLHQVRPGGADKSYGIEAGRLAGLPAVVIDRAKQVMTQIEK---HSK 852 Query: 848 KDMRLYYP-----EIQTKESKNNLSKNDKLFVE 875 + L +++K+SK+ L + +F E Sbjct: 853 IALGLRQGIEKVNPVKSKKSKDKLIEQLDIFEE 885 >gi|113477122|ref|YP_723183.1| DNA mismatch repair protein MutS [Trichodesmium erythraeum IMS101] gi|123160394|sp|Q10YG4|MUTS_TRIEI RecName: Full=DNA mismatch repair protein mutS gi|110168170|gb|ABG52710.1| DNA mismatch repair protein MutS [Trichodesmium erythraeum IMS101] Length = 901 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 306/837 (36%), Positives = 467/837 (55%), Gaps = 39/837 (4%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI---PMC 84 MM++Y+E+K +L+ +R+GDF+E FF DA+ ++ L L + KH GK+I PM Sbjct: 41 MMQRYVEVKQQYSHALLLFRVGDFFECFFQDAVTIAQEL--ELVQTTKHAGKEIGRVPMT 98 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H Y L++ G+ + +C+Q+E AKK + V+R + R++TPGTLT+D + Sbjct: 99 GVPHHAVEKYATFLVEKGYAVVVCDQVEDSAIAKKENRQ--VKREITRILTPGTLTDDGM 156 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIF-KISTSNHDRLISDIMRIDPREIIFSEKE 203 L +NYL AV + W +A+ DISTG F T D+L ++MR+ P E++F K Sbjct: 157 LKARYNNYLAAVVIAKNYWGLAYTDISTGEFLTTQTEGLDQLTQELMRLQPSEVLFPTKA 216 Query: 204 LSHAEYKSLFETLGNVAVAQPNVF---------FDHSISESRIADYYNITTVDTFGSFS- 253 E ++ P+ F F ++ R+ + + +++ G Sbjct: 217 PDIGFMLRPGERSDHLPEYLPHSFCYSLRPQQPFSLGEAKERLLMKFQLASLEGLGCERL 276 Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQ 312 + AA + Y+++TQ N+ + + L +D +R NLEI +T+ GS + Sbjct: 277 PLGVRAAGGLLEYLEETQKENQVPLQRLRSYTLADFLILDHQSRRNLEITQTVRDGSYQG 336 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 SLL +D + T GGR + PL I R D+I+ IQN L IQ++L+ Sbjct: 337 SLLSVVDKTSTAMGGRALRRWLQQPLLSLKGIRARHDTIDELIQNNDLRQDIQRVLRQIY 396 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE 432 D+ R R G +D+ + D + + + L+ F+ L+ ++K+ + Q L Sbjct: 397 DLERLTGRTGAGTANARDLVFLADSL-TKLPELSTFVSQGNSPYLK-VLQKIPPILQELG 454 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 K + S L + ++GG +R G + LDE R L ++ ++ IASL+ E T I NLK Sbjct: 455 KKIHSNLVESPSQKLKEGGLIRPGINERLDEMRKLAEEDQKWIASLETTERERTGIPNLK 514 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 + +N GY+I ++ S A++ + D + +QT++N R+ T EL + E RI A + Sbjct: 515 VGYNKAFGYYISISKSKANL------APDDYTRKQTLTNEERYITEELKEREVRILTAQD 568 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 +E + F L N + E +E + N S+ +A +DI LA +A QNY RP + +S Sbjct: 569 DLNELEYDIFVDLRNEVGEYAEEIRNVSRAVAALDILCGLADVAIYQNYVRPTMVDSREL 628 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPN--DKNSG-------KLWLLTGPNMGGK 663 + +GRHP+VEK L + F+ N L N NSG L +LTGPN GK Sbjct: 629 KIIEGRHPVVEKYL---PAGFFVPNTAILGSKNLEKNNSGITPYSAPDLIILTGPNASGK 685 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 S +LRQ LI +MAQ+GS+VPAS A +G+ D++F+RVG+ D+LA+G+STFMVEM ETA+I Sbjct: 686 SCYLRQVGLIQLMAQIGSFVPASSAVLGVSDRIFTRVGAVDDLATGQSTFMVEMNETANI 745 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLK 783 LN AT +S V+LDEIGRGTAT DG+SIAW+ EYL R + ATH+HEL +LS L Sbjct: 746 LNHATEKSLVLLDEIGRGTATFDGISIAWSVAEYLATEILSRTIFATHYHELNELSSILD 805 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 N + V + + I+FLH+V PG AD SYGI+ G+LAGLP++VI+RA +++ E Sbjct: 806 NVANYQVTVKELPDKIVFLHQVQPGGADKSYGIEAGRLAGLPDSVIARARQVMQQIE 862 >gi|330817624|ref|YP_004361329.1| DNA mismatch repair protein MutS [Burkholderia gladioli BSR3] gi|327370017|gb|AEA61373.1| DNA mismatch repair protein MutS [Burkholderia gladioli BSR3] Length = 915 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 317/917 (34%), Positives = 468/917 (51%), Gaps = 59/917 (6%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 E + TPMM+QY+ IKS +PD+LVFYRMGDFYELF+DDA ASR L +TLT+RG G Sbjct: 30 EASFSGHTPMMQQYLRIKSEHPDTLVFYRMGDFYELFYDDAEKASRLLDLTLTQRGASGG 89 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 I M GVP H Y+ KL+K G +AICEQI P +K V R VVR+VTPGT Sbjct: 90 NPIKMAGVPHHAVEQYLAKLVKFGESVAICEQIGDPAT-----SKGPVERKVVRVVTPGT 144 Query: 139 LTEDQLLSPTDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRI 192 LT+ LLS YL+A++ + T +AW+++++G +++ D L + + RI Sbjct: 145 LTDAALLSDKADVYLLALSLGHNKRGVLTNVGLAWLNLASGALRLAEIAPDELGAALERI 204 Query: 193 DPREIIFSEKELSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFGS 251 P EI+ ++ + G AV + P FD + R+ ++ +++ FG+ Sbjct: 205 RPAEILAADAAIEAV-------PAGAGAVTRVPAWHFDIASGTQRLCSQLDVASLEGFGA 257 Query: 252 FSQVEKTAAAAAIS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR 310 S +A A+ Y TQ + + E + +D A R NLE+ TL G+ Sbjct: 258 HSLTSACGSAGALLLYAASTQGQQLRHVRSLKVETESEYIGLDPATRRNLELTETLRGTE 317 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQ--NPILINPIQKIL 368 +L +D T G RL + P S R +I ++ ++ ++ L Sbjct: 318 SPTLYSLLDTCGTTMGSRLLRHWLHHPPRASVAAQARQQAIGALLEAAGEASLDSLRGAL 377 Query: 369 KSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRS----GINILNLFLKNDLPEELRGAVEKL 424 + DV R RL + P+D++ +RD S I + + L A+E Sbjct: 378 RQVADVERITGRLALLSARPRDLSSLRDTFTSLPELRARIAPIAQQASALARLEAALEP- 436 Query: 425 KKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAE 484 P L+ ++ + RDGG + G DA LDE R + + + + L+ + Sbjct: 437 ---PAGCADLLTRAVAPEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLEARERA 493 Query: 485 ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLE 544 T I NL++++N G++IEVT + D + RQT+ N R+ T EL E Sbjct: 494 RTGIANLRVEYNKVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTFE 547 Query: 545 NRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP 604 ++ +A AL E ++ L +++ E + +A +D+ A A A+ ++ P Sbjct: 548 DKALSAQERALSRERALYDALLQSLLPHIEECQRVAGALAELDLLCAFAERARALDWVAP 607 Query: 605 IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 + ++ GRHP+VE ++Q FIANDC L N KL L+TGPNMGGKS Sbjct: 608 RFSDEIGIEIEQGRHPVVEAQVEQ-----FIANDCRLG-----NERKLLLITGPNMGGKS 657 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 TF+RQ ALI +MA +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+IL Sbjct: 658 TFMRQTALIALMAYVGSYVPAKSACFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAIL 717 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR 784 N AT QS V++DEIGRGT+T DGL++AWA +L N C L ATH+ ELT L Sbjct: 718 NDATPQSLVLMDEIGRGTSTFDGLALAWAIARHLLSNNGCYTLFATHYFELTQLPVEFPH 777 Query: 785 FHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYH 844 N L + GI+FLH V G A+ SYG+QV +LAG+P VI A L E+ Sbjct: 778 AANVHLSAVEHGHGIVFLHAVNDGPANQSYGLQVAQLAGVPPAVIRAARKHLAHLEQQSA 837 Query: 845 HN---QKDMRLYYPEIQTKESKNNLSKNDKLFVE--------KIKCLNLDEMSPLTALKT 893 Q D+ P + E +L + + +++ ++ D + P AL Sbjct: 838 GQPTPQLDLFAAPPPVYDDEPDFDLPEAREPAAPAAPHPALLRLREIDPDNLKPREALDL 897 Query: 894 LYAVKAWTLEKYSTDED 910 LY ++ TL D+D Sbjct: 898 LYELQ--TLAARQADDD 912 >gi|121599042|ref|YP_993485.1| DNA mismatch repair protein MutS [Burkholderia mallei SAVP1] gi|124385860|ref|YP_001029086.1| DNA mismatch repair protein MutS [Burkholderia mallei NCTC 10229] gi|126448109|ref|YP_001080993.1| DNA mismatch repair protein MutS [Burkholderia mallei NCTC 10247] gi|167919640|ref|ZP_02506731.1| DNA mismatch repair protein [Burkholderia pseudomallei BCC215] gi|238561606|ref|ZP_00441712.2| DNA mismatch repair protein MutS [Burkholderia mallei GB8 horse 4] gi|254178430|ref|ZP_04885085.1| DNA mismatch repair protein MutS [Burkholderia mallei ATCC 10399] gi|254209324|ref|ZP_04915670.1| DNA mismatch repair protein MutS [Burkholderia mallei JHU] gi|254358006|ref|ZP_04974279.1| DNA mismatch repair protein MutS [Burkholderia mallei 2002721280] gi|121227852|gb|ABM50370.1| DNA mismatch repair protein MutS [Burkholderia mallei SAVP1] gi|124293880|gb|ABN03149.1| DNA mismatch repair protein MutS [Burkholderia mallei NCTC 10229] gi|126240979|gb|ABO04072.1| DNA mismatch repair protein MutS [Burkholderia mallei NCTC 10247] gi|147750097|gb|EDK57168.1| DNA mismatch repair protein MutS [Burkholderia mallei JHU] gi|148027133|gb|EDK85154.1| DNA mismatch repair protein MutS [Burkholderia mallei 2002721280] gi|160699469|gb|EDP89439.1| DNA mismatch repair protein MutS [Burkholderia mallei ATCC 10399] gi|238524194|gb|EEP87628.1| DNA mismatch repair protein MutS [Burkholderia mallei GB8 horse 4] Length = 939 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 307/883 (34%), Positives = 461/883 (52%), Gaps = 40/883 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ IKS +PD+LVFYRMGDFYELFF+DA A+R L +TLT+RG G I M G Sbjct: 69 TPMMQQYLRIKSEHPDTLVFYRMGDFYELFFEDAEKAARLLDLTLTQRGASAGTPIKMAG 128 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H Y+ KL+K G AICEQI P +K V R VVR+VTPGTLT+ LL Sbjct: 129 VPHHAVEQYLAKLVKFGESAAICEQIGDPAT-----SKGPVERKVVRVVTPGTLTDAALL 183 Query: 146 SPTDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 S +L+A+ + + +AW+++++G +++ D+L + + RI P EI+ Sbjct: 184 SDKSDVFLLALCVGHNKRGVASNIGLAWLNLASGALRLAELAPDQLGAALERIRPAEILA 243 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 ++ + +S+ +G + P FD + R+ D + ++D FG+ + Sbjct: 244 ADGTI-----ESVPAGMGAITRV-PAWHFDIASGTQRLCDQLEVASLDGFGAQALTSANG 297 Query: 260 AAAAIS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA A+ Y TQ + + E+ + +D + R NLE+ TL G+ +L + Sbjct: 298 AAGALLIYAAATQGQQLRHVRSLKVENESEYIGLDPSTRRNLELTETLRGTESPTLYSLL 357 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP--ILINPIQKILKSSPDVPR 376 D T G RL + P S R +I + P ++ ++ L+ DV R Sbjct: 358 DTCCTAMGSRLLRHWLHHPPRASVAAQARHQAIGALLDAPPNAGLDSLRSALRQIADVER 417 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 RL + P+D++ +RD + + + G +E + P L+ Sbjct: 418 ITGRLALLSARPRDLSSLRDTFAALPALRERVAEIASNAAALGRLEAALEPPPGCLDLLT 477 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 ++ + RDGG + G DA LDE R + + + + L+ + T I NL++++N Sbjct: 478 RAIAAEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLETRERARTGISNLRVEYN 537 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 G++IEVT + D + RQT+ N R+ T EL E++ +A AL Sbjct: 538 KVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTFEDKALSAQERALA 591 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 E ++ + A++ E + +A +D+ A A A+ ++ P + + Sbjct: 592 RERALYDGVLQALLPHIEGCQRVASGLAELDLLAAFAERARTLDWVAPEFTDEIGIEIDQ 651 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE ++Q FIANDC L+ KL L+TGPNMGGKSTF+RQ ALI +M Sbjct: 652 GRHPVVEAQVEQ-----FIANDCALN-----PERKLLLITGPNMGGKSTFMRQTALIALM 701 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+ILN AT S V++D Sbjct: 702 AYVGSYVPAKAARFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILNDATPHSLVLMD 761 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DGL++AWA +L NRC L ATH+ ELT L + N L + Sbjct: 762 EIGRGTSTFDGLALAWAIARHLLSHNRCYTLFATHYFELTQLPAEFPQAANVHLSAVEHG 821 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN---QKDMRLY 853 GI+FLH V G A+ SYG+QV +LAG+P VI A L E+ Q D+ Sbjct: 822 HGIVFLHAVEEGPANQSYGLQVAQLAGVPAPVIRAARKHLAHLEQQSAAQATPQLDLFAA 881 Query: 854 YPEIQTKE-SKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 P + E ++ + +E++ L+ D++ P AL LY Sbjct: 882 PPVVDEPECNEPPAAATPHPALERLLELDPDDLKPRDALDLLY 924 >gi|315282283|ref|ZP_07870725.1| DNA mismatch repair protein MutS [Listeria marthii FSL S4-120] gi|313614066|gb|EFR87768.1| DNA mismatch repair protein MutS [Listeria marthii FSL S4-120] Length = 860 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 309/893 (34%), Positives = 500/893 (55%), Gaps = 59/893 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+EIK D+ +F+R+GDFYE+FF+DAL AS+ L ITLT R + IPMCG Sbjct: 5 TPMIKQYLEIKDKYQDAFLFFRLGDFYEMFFEDALNASQILEITLTGREGGTKEKIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A+ YI LI+ G+++AICEQ+E P + K +V+R VV+L++PGT+ +++ L Sbjct: 65 VPYHSASGYIDTLIEKGYKVAICEQVEDP-----KTTKGMVKREVVQLISPGTVMDERGL 119 Query: 146 SPTDSNYLMAVARIR-TEWAIAWIDISTGIFK--ISTSNHDRLISDIMRIDPREIIFSEK 202 ++NY+ ++ E+ A+ D+STG K + ++ DRLI+++ + RE+I S Sbjct: 120 KAKENNYIASLYCYEGKEYGFAYSDLSTGELKSTVIEASEDRLINELTTLSTRELIVSSS 179 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 E E L +V Q + S+ E + N V S S EK A Sbjct: 180 EK---------EVLSDVMKEQLGLTL--SVHEEDMIPAENEKLVTRHMSLS--EKRAIGK 226 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDYS 321 + Y+K+TQ + + + + + +D ++ NLE+ ++ G R+ +LL +D + Sbjct: 227 LLHYLKETQKRDLGHLQQAVHYETSNYMKMDYYSKRNLELAESIRGKGRQGTLLWLLDNT 286 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSI-----NFFIQNPILINPIQKILKSSPDVPR 376 T GGR+ + I PL D KI R + + +FF + ++ N LK+ D+ R Sbjct: 287 QTAMGGRMLKQWIDRPLIDRKKIIERQNDVSELMAHFFERLELVEN-----LKNVYDLER 341 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R+ G +D+ +R+ + I L + ++ EL ++ ++L + LE Sbjct: 342 LAGRVAYGNVNARDLVQLRNSLYQIPRIRATLLSMNSESLTELATQLDPCEELTEKLEDA 401 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + D P R+GG ++DG ++ LD R K IA L+ K E T IK +K+ Sbjct: 402 IM----DSAPISIREGGIIKDGYNSQLDTYRDASRNGKTWIAELERKERELTGIKTMKVG 457 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N GY+IEVT ++ +L + R+ +QT++N R+ T EL + E I +A + Sbjct: 458 FNRVFGYYIEVTRANTHLL-----PEGRYERKQTLTNAERYITPELKEKEKLILDAEEKS 512 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E + F + + + E L ++ ++ ID + A ++++ ++ RP + + V Sbjct: 513 MELEYQLFTEVREMVKDYIERLQKLAKSVSEIDCLQSFADISEKNHFIRPTLSEDGSLHV 572 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 K GRHP+VEK + QS ++ANDCDL D+N ++ L+TGPNM GKST++RQ AL Sbjct: 573 KQGRHPVVEKVMGAQS---YVANDCDL----DENR-EILLITGPNMSGKSTYMRQVALTA 624 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 I AQ+G +VPA A + + D++F+R+G+AD+L +G+STFMVEM+E + + AT S ++ Sbjct: 625 ICAQVGCFVPAEEATLPVFDQIFTRIGAADDLIAGQSTFMVEMLEARNAIVHATKDSLIL 684 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 DEIGRGTAT DG+++A A IEY+HE + L +TH+HELTDL K L+ N + + Sbjct: 685 FDEIGRGTATYDGMALAQAIIEYIHENVHAKTLFSTHYHELTDLEKELRGLQNIHVSAVE 744 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE----KLYHHNQKDM 850 N ++FLHK+ G AD SYGI V +LA LP T+I RA IL+ E K+ N K Sbjct: 745 ENGKVVFLHKIKEGPADKSYGIHVAELAELPKTLIERASRILEQLESADKKIIITNDKQP 804 Query: 851 RLYYPEIQTK----ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + E+Q E + S + +++I +N+ +M+P+ A+ LY +++ Sbjct: 805 EEVHEEVQLSMFPVEPEEKASSKETKLLKEIASMNIMQMTPMDAMNKLYELQS 857 >gi|167895004|ref|ZP_02482406.1| DNA mismatch repair protein [Burkholderia pseudomallei 7894] gi|217420488|ref|ZP_03451993.1| DNA mismatch repair protein MutS [Burkholderia pseudomallei 576] gi|217395900|gb|EEC35917.1| DNA mismatch repair protein MutS [Burkholderia pseudomallei 576] Length = 939 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 307/883 (34%), Positives = 461/883 (52%), Gaps = 40/883 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ IKS +PD+LVFYRMGDFYELFF+DA A+R L +TLT+RG G I M G Sbjct: 69 TPMMQQYLRIKSEHPDTLVFYRMGDFYELFFEDAEKAARLLDLTLTQRGASAGTPIKMAG 128 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H Y+ KL+K G AICEQI P +K V R VVR+VTPGTLT+ LL Sbjct: 129 VPHHAVEQYLAKLVKFGESAAICEQIGDPAT-----SKGPVERKVVRVVTPGTLTDAALL 183 Query: 146 SPTDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 S +L+A+ + + +AW+++++G +++ D+L + + RI P EI+ Sbjct: 184 SDKSDVFLLALCVGHNKRGVASNIGLAWLNLASGALRLAELAPDQLGAALERIRPAEILA 243 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 ++ + +S+ +G + P FD + R+ D + ++D FG+ + Sbjct: 244 ADGTI-----ESVPAGMGAITRV-PAWHFDIASGTQRLCDQLEVASLDGFGAQALTSANG 297 Query: 260 AAAAIS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA A+ Y TQ + + E+ + +D + R NLE+ TL G+ +L + Sbjct: 298 AAGALLIYAAATQGQQLRHVRSLKVENESEYIGLDPSTRRNLELTETLRGTESPTLYSLL 357 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP--ILINPIQKILKSSPDVPR 376 D T G RL + P S R +I + P ++ ++ L+ DV R Sbjct: 358 DTCCTAMGSRLLRHWLHHPPRASVAAQARHQAIGALLDAPPNAGLDSLRSALRQIADVER 417 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 RL + P+D++ +RD + + + G +E + P L+ Sbjct: 418 ITGRLALLSARPRDLSSLRDTFAALPALRERVAEIASNAAALGRLEAALEPPPGCLDLLT 477 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 ++ + RDGG + G DA LDE R + + + + L+ + T I NL++++N Sbjct: 478 RAIAAEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLETRERARTGISNLRVEYN 537 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 G++IEVT + D + RQT+ N R+ T EL E++ +A AL Sbjct: 538 KVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTFEDKALSAQERALA 591 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 E ++ + A++ E + +A +D+ A A A+ ++ P + + Sbjct: 592 RERALYDGVLQALLPHIEGCQRVASGLAELDLLAAFAERARTLDWVAPEFTDEIGIEIDQ 651 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE ++Q FIANDC L+ KL L+TGPNMGGKSTF+RQ ALI +M Sbjct: 652 GRHPVVEAQVEQ-----FIANDCALN-----PERKLLLITGPNMGGKSTFMRQTALIALM 701 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+ILN AT S V++D Sbjct: 702 AYVGSYVPAKAARFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILNDATPHSLVLMD 761 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DGL++AWA +L NRC L ATH+ ELT L + N L + Sbjct: 762 EIGRGTSTFDGLALAWAIARHLLSHNRCYTLFATHYFELTQLPAEFPQAANVHLSAVEHG 821 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN---QKDMRLY 853 GI+FLH V G A+ SYG+QV +LAG+P VI A L E+ Q D+ Sbjct: 822 HGIVFLHAVEEGPANQSYGLQVAQLAGVPAPVIRAARKHLAHLEQQSAAQATPQLDLFAA 881 Query: 854 YPEIQTKE-SKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 P + E ++ + +E++ L+ D++ P AL LY Sbjct: 882 PPVVDEPECNEPPAAATPHPALERLLELDPDDLKPRDALDLLY 924 >gi|53723768|ref|YP_103293.1| DNA mismatch repair protein MutS [Burkholderia mallei ATCC 23344] gi|254200246|ref|ZP_04906612.1| DNA mismatch repair protein MutS [Burkholderia mallei FMH] gi|81685054|sp|Q62J26|MUTS_BURMA RecName: Full=DNA mismatch repair protein mutS gi|189030772|sp|A3ML57|MUTS_BURM7 RecName: Full=DNA mismatch repair protein mutS gi|189030773|sp|A2SAW7|MUTS_BURM9 RecName: Full=DNA mismatch repair protein mutS gi|189030774|sp|A1V5I2|MUTS_BURMS RecName: Full=DNA mismatch repair protein mutS gi|52427191|gb|AAU47784.1| DNA mismatch repair protein MutS [Burkholderia mallei ATCC 23344] gi|147749842|gb|EDK56916.1| DNA mismatch repair protein MutS [Burkholderia mallei FMH] Length = 891 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 307/883 (34%), Positives = 461/883 (52%), Gaps = 40/883 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ IKS +PD+LVFYRMGDFYELFF+DA A+R L +TLT+RG G I M G Sbjct: 21 TPMMQQYLRIKSEHPDTLVFYRMGDFYELFFEDAEKAARLLDLTLTQRGASAGTPIKMAG 80 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H Y+ KL+K G AICEQI P +K V R VVR+VTPGTLT+ LL Sbjct: 81 VPHHAVEQYLAKLVKFGESAAICEQIGDPAT-----SKGPVERKVVRVVTPGTLTDAALL 135 Query: 146 SPTDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 S +L+A+ + + +AW+++++G +++ D+L + + RI P EI+ Sbjct: 136 SDKSDVFLLALCVGHNKRGVASNIGLAWLNLASGALRLAELAPDQLGAALERIRPAEILA 195 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 ++ + +S+ +G + P FD + R+ D + ++D FG+ + Sbjct: 196 ADGTI-----ESVPAGMGAITRV-PAWHFDIASGTQRLCDQLEVASLDGFGAQALTSANG 249 Query: 260 AAAAIS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA A+ Y TQ + + E+ + +D + R NLE+ TL G+ +L + Sbjct: 250 AAGALLIYAAATQGQQLRHVRSLKVENESEYIGLDPSTRRNLELTETLRGTESPTLYSLL 309 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP--ILINPIQKILKSSPDVPR 376 D T G RL + P S R +I + P ++ ++ L+ DV R Sbjct: 310 DTCCTAMGSRLLRHWLHHPPRASVAAQARHQAIGALLDAPPNAGLDSLRSALRQIADVER 369 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 RL + P+D++ +RD + + + G +E + P L+ Sbjct: 370 ITGRLALLSARPRDLSSLRDTFAALPALRERVAEIASNAAALGRLEAALEPPPGCLDLLT 429 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 ++ + RDGG + G DA LDE R + + + + L+ + T I NL++++N Sbjct: 430 RAIAAEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLETRERARTGISNLRVEYN 489 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 G++IEVT + D + RQT+ N R+ T EL E++ +A AL Sbjct: 490 KVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTFEDKALSAQERALA 543 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 E ++ + A++ E + +A +D+ A A A+ ++ P + + Sbjct: 544 RERALYDGVLQALLPHIEGCQRVASGLAELDLLAAFAERARTLDWVAPEFTDEIGIEIDQ 603 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE ++Q FIANDC L+ KL L+TGPNMGGKSTF+RQ ALI +M Sbjct: 604 GRHPVVEAQVEQ-----FIANDCALNPER-----KLLLITGPNMGGKSTFMRQTALIALM 653 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+ILN AT S V++D Sbjct: 654 AYVGSYVPAKAARFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILNDATPHSLVLMD 713 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DGL++AWA +L NRC L ATH+ ELT L + N L + Sbjct: 714 EIGRGTSTFDGLALAWAIARHLLSHNRCYTLFATHYFELTQLPAEFPQAANVHLSAVEHG 773 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN---QKDMRLY 853 GI+FLH V G A+ SYG+QV +LAG+P VI A L E+ Q D+ Sbjct: 774 HGIVFLHAVEEGPANQSYGLQVAQLAGVPAPVIRAARKHLAHLEQQSAAQATPQLDLFAA 833 Query: 854 YPEIQTKE-SKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 P + E ++ + +E++ L+ D++ P AL LY Sbjct: 834 PPVVDEPECNEPPAAATPHPALERLLELDPDDLKPRDALDLLY 876 >gi|315651393|ref|ZP_07904418.1| DNA mismatch repair protein MutS [Eubacterium saburreum DSM 3986] gi|315486352|gb|EFU76709.1| DNA mismatch repair protein MutS [Eubacterium saburreum DSM 3986] Length = 880 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 305/890 (34%), Positives = 501/890 (56%), Gaps = 37/890 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM +Y+E K+ PD ++FYR+GDFYE+FFDDA + ++ L +TLT + L + PMCG Sbjct: 4 SPMMSKYLETKNEYPDCILFYRLGDFYEMFFDDATMVAKELELTLTGKDCGLKERAPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A YI +L++ GH++AI EQ+E P AK LV+R VVR+VTPGT+T +L Sbjct: 64 VPYHAAETYINRLVQNGHKVAIAEQMEDPKLAK-----GLVKREVVRIVTPGTITSSGVL 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREIIFSEK-E 203 + +NY++++ I + ++ DISTG F ++ R L +I + P EII + E Sbjct: 119 ADDKNNYIISIFYIDERFGLSICDISTGDFFVTELITSRELFDEIQKYQPTEIICNHAFE 178 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAA 262 +S + L + N +F + ++ +++V+ G S A+ A Sbjct: 179 ISGISLEELKKKYNITITPLDNSYFGEKSGIDILKKHFKVSSVEALGLSEFTYATIASGA 238 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYS 321 + Y+ + Q + I + +D+++R NLE++ T+ ++ SLL +D + Sbjct: 239 MLRYLYEMQKSSCAQIVSISAYKNGDYMIVDTSSRRNLELVETMREKKKNGSLLGVLDKT 298 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G R+ + PL + +I R +++ + I +++ L D+ R ++R+ Sbjct: 299 STAMGARMLRSFLEQPLINRERILNRQEAVAELFERYIDREELREYLSPVYDLERLMARV 358 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 +D+ + ++ I + L N E+ E L +L ++ + +++ Sbjct: 359 VTKNANTRDLLSLSASMKM-IAPIKEVLNNCTSGEIVKINEGLDRLEDIID-IIDRAVNE 416 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 D P ++G ++ G + +D+ R + + K +ASL+ E+T IKNLKIK+N GY Sbjct: 417 DSPLSLKEGNIIKTGYNVEIDKLRQAKTEGKNWLASLEADEKEKTGIKNLKIKYNKVFGY 476 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 + EVT+S ++ D F+ +QT++N R+TT +L +LEN I A + +E E Sbjct: 477 YFEVTNSFKDMVP------DYFVRKQTLTNAERYTTDKLKELENIILGAEDKLNNLEYEV 530 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 F + + + + + ++++ +A ID +LA +A NY RP I+ + +KDGRHP+ Sbjct: 531 FTEVRDTVADNVNRIQSSAKSLAYIDAICSLATVAYNNNYTRPQINTNGVIDIKDGRHPV 590 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE L S FIAND L D+N ++ ++TGPNM GKST++RQ ALI +MAQ+GS Sbjct: 591 VESMLGDDS---FIANDTYL----DQNKKRMSIITGPNMAGKSTYMRQTALICMMAQIGS 643 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPAS A + + D++F+RVG++D+LASG+STFMVEM E A+IL AT S VILDEIGRG Sbjct: 644 FVPASQASLCVCDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATRNSLVILDEIGRG 703 Query: 742 TATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 T+T DGL+IAWA +E++ + L ATH+HEL++L +L +N + V + + I Sbjct: 704 TSTFDGLAIAWAVVEHISNIKLIGAKTLFATHYHELSELEGTLPGVNNYCILVKERGDNI 763 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF----------EKLYHHNQKD 849 +FL K++ G AD SYGIQV KLAG+P +V RA ++++ E K Sbjct: 764 VFLRKIVTGGADKSYGIQVAKLAGVPESVTERAKELIEELSGADIATRAREIAEAAVSKR 823 Query: 850 MRLYYP-EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + P E+++ + + N+ +E+I +++ M+P+ AL TLYA++ Sbjct: 824 KPVKRPDEVESGQLSLFDAVNNDSIIEEISKIDITSMTPMDALNTLYALQ 873 >gi|169342625|ref|ZP_02863669.1| DNA mismatch repair protein MutS [Clostridium perfringens C str. JGS1495] gi|169299267|gb|EDS81336.1| DNA mismatch repair protein MutS [Clostridium perfringens C str. JGS1495] Length = 909 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 297/836 (35%), Positives = 478/836 (57%), Gaps = 36/836 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY EIK D ++F+R+GDFYE+FF+DA A+R L + LT R L K PMCG Sbjct: 4 TPMMRQYFEIKENYKDCILFFRLGDFYEMFFEDAETAARELELVLTGRDCGLEKRAPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H +N YI +L+ G+++AICEQ+E P AK +V+R+V++++TPGT T+ + Sbjct: 64 IPFHASNSYIGRLVAKGYKVAICEQVEDPKFAK-----GIVKRDVIKVITPGTYTDSSFV 118 Query: 146 SPTDSNYLMAVARI--RTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREIIFSE 201 T +NY+M + R ++A DISTG F + ++ ++ +I + +P+EII + Sbjct: 119 EETKNNYIMTIYSDLERNRCSLAITDISTGDFLATEGELEKGVILDEISKFNPKEIILLD 178 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 L K + T + +P +F E + + N + S S + K ++ Sbjct: 179 S-LDQELIKDITLTTPALISRKPIEYF-----EEKFEEVLNNQFGEKSNSLSLMIKKSSN 232 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 A + YI TQ ++ I E + + ID ++R NLE+ L S++ SLL +D Sbjct: 233 ALVKYILDTQKISLTNINDIEVYSLVDFMTIDLSSRRNLELTENLREKSKKGSLLWVLDK 292 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G R+ I PL + KI RL+++ + L + +++ L D+ R L + Sbjct: 293 TETSMGSRMLRRWIEEPLVNKEKITLRLNAVEELFNDLSLNDSLKEALHDIYDIERILGK 352 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 + KD+ ++ I N+ + + L + ++ L+ + LEK++ Sbjct: 353 ISNKNANAKDLIALKTSIGKIPNVKGIIENCTSSLLKNYHHNLDDLRDIYDLLEKSIK-- 410 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 +D +DG ++DG + +DE R + K I+SL+ + E T IK+LK+ N Sbjct: 411 --EDPSLTLKDGDLIKDGFNGEIDELRLAKTNGKDWISSLENREREFTGIKSLKVGFNKV 468 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IE++ ++ S + + R+I +QT++N RF T EL ++E ++ A+ +E Sbjct: 469 FGYYIEISKANYSSI-----PEGRYIRKQTLANAERFITPELKEIEEKLLGASEKLCSLE 523 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F + N + + L +++IA +D LA +A E ++ +P I+ +++GR Sbjct: 524 YDIFLDIRNEVENHIDRLKTTAKIIAELDCISNLAFVALENDFIKPEINEDGETKIENGR 583 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VEK + + FI ND + +K+ +L ++TGPNM GKST++RQ A+I +M Q Sbjct: 584 HPVVEKVIPKGE---FIPNDTII----NKDDNQLLIITGPNMSGKSTYMRQVAIITLMCQ 636 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPAS A+I +VDK+F+R+G++D+LA G+STFMVEM E ++IL AT S V+LDE+ Sbjct: 637 IGSFVPASKANISVVDKIFTRIGASDDLAGGKSTFMVEMWEVSNILKNATENSLVLLDEV 696 Query: 739 GRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 GRGT+T DGLSIAW+ IEY+ + RC+ L ATH+HELT L + N ++ V + + Sbjct: 697 GRGTSTYDGLSIAWSVIEYICKNKNLRCKTLFATHYHELTKLEGEIHGVRNYSVAVKEVD 756 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 IIFL K+I G AD SYGI+V KLAG+P+ VI+RA +IL+T E + D+ L Sbjct: 757 NNIIFLRKIIEGGADQSYGIEVAKLAGIPDEVINRAKEILETLEMESSKDNLDLAL 812 >gi|121998436|ref|YP_001003223.1| DNA mismatch repair protein MutS [Halorhodospira halophila SL1] gi|189083205|sp|A1WXK9|MUTS_HALHL RecName: Full=DNA mismatch repair protein mutS gi|121589841|gb|ABM62421.1| DNA mismatch repair protein MutS [Halorhodospira halophila SL1] Length = 868 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 318/896 (35%), Positives = 485/896 (54%), Gaps = 36/896 (4%) Query: 13 SEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTK 72 +++ + N TPMMRQ++ IK+ P++L+FYRMGDFYELF++DA A++ L ITLT Sbjct: 4 TQEAETATNGAGHTPMMRQFLRIKAEYPETLLFYRMGDFYELFYEDAERAAKLLDITLTT 63 Query: 73 RGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVR 132 RG+ G IPM GVPV + Y+ +L+++G +AICEQI P K V R VVR Sbjct: 64 RGESAGAPIPMAGVPVQSVESYLARLVRLGESVAICEQIGDP-----NTTKGPVERQVVR 118 Query: 133 LVTPGTLTEDQLLSPTDSNYLMAVA-RIRTEWAIAWIDISTGIFKI-STSNHDRLISDIM 190 +VTPGTLTED LL +N L AVA + + +A +++S+G F + + + L +++ Sbjct: 119 VVTPGTLTEDALLEERSANLLTAVAPGPKGRFGVASLELSSGRFSVLEAPDQEALTAELE 178 Query: 191 RIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG 250 R+ P E+I + + + A G VA +P+ F++ + + + FG Sbjct: 179 RLRPAELILPDDDQTPAPEG------GCVAQRRPSWHFEYDSARRLLLRQLGTHDLSGFG 232 Query: 251 SFS-QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS 309 + TAA A + Y+ +TQ P +G E + ID+A+R NLEI LSG Sbjct: 233 AEELHAPVTAAGALLQYLNETQRAALPHVGALTVESRDEAITIDAASRRNLEIEHNLSGG 292 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 E +L ID S+T GGRL + PL I R ++ ++ L+ Sbjct: 293 TEHTLASVIDTSVTAMGGRLLRRWLQRPLRRRETIAARHAAVAALADG--AFADVRSTLE 350 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 DV R L+R+ +G P+D+ +RD + + L + L L+ +L + PQ Sbjct: 351 GCADVERILARVALGTARPRDLTGLRDALER-LPQLQILLGQLNSHRLQALGVELDEHPQ 409 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 +++ L + D P RDGG + DG D LDE RS+ + +A+L+ + T I Sbjct: 410 TVD-LLQRAIIDTPPATVRDGGVIADGFDGELDELRSMSRNADDYLAALEAEERAATGIP 468 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LK+ N GY+IEV+ S + + +R+ RQT+ RF T EL E ++ + Sbjct: 469 TLKVGFNRVHGYYIEVSRSQSGHMP------ERYTRRQTLKAAERFITPELKRFEEQVLS 522 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 A AL E +E L + + L ++ +A +D A A A+ +Y +P + ++ Sbjct: 523 ARERALAREKALYEQLVADLASELTPLQRSASALAELDALAAFAERARSLDYVQPELADT 582 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 ++ GRHP+VE+ L PF+ ND L N ++ L+TGPNMGGKST++RQ Sbjct: 583 PGVRIEGGRHPVVEQAL----DAPFVPNDVRLD-----NRRRMLLITGPNMGGKSTYMRQ 633 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI ++A G++VPA A +G +D++F+R+G+AD+LASGRSTFMVEM ETA+IL+ AT Sbjct: 634 TALIALLAYAGAFVPAQRAVLGPIDRIFTRIGAADDLASGRSTFMVEMTETANILHNATA 693 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 +S V++DEIGRGT+T DGL++AWAT E L R L ATH+ E+T L + N Sbjct: 694 ESLVLMDEIGRGTSTFDGLALAWATAERLATRIRAFTLFATHYFEMTALEQIHPGVVNVH 753 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN--Q 847 L+ ++ E I+FLH V G A+ SYG+QV LAG+P V+ A + L++ E + Sbjct: 754 LEAAEHGERIVFLHAVRDGPANQSYGLQVAALAGVPQEVLKAAREKLRSLESGDGGDTGS 813 Query: 848 KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTLE 903 + L+ PE E ++ L+ D ++P AL+T+Y +KA E Sbjct: 814 AQLPLFGPE-PVFPPPAQPEPEPDPIREAVENLDPDGLTPRDALETIYWLKAQCKE 868 >gi|282882093|ref|ZP_06290734.1| DNA mismatch repair protein MutS [Peptoniphilus lacrimalis 315-B] gi|281298123|gb|EFA90578.1| DNA mismatch repair protein MutS [Peptoniphilus lacrimalis 315-B] Length = 866 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 315/892 (35%), Positives = 498/892 (55%), Gaps = 65/892 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY++ K +PDS++F+R+GDFYE+FFDDA+LAS+ L I LTKR + PMCG Sbjct: 7 TPMMLQYLDTKKKHPDSILFFRLGDFYEMFFDDAILASKELEIALTKRDAGFAQKAPMCG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H A+ YI KLI G+++ IC+Q+E P AK LV+R V +++TPGT T+ L Sbjct: 67 IPYHVAHTYISKLINKGYKVTICDQVEDPKLAK-----GLVKRQVTKIITPGTFTDSDFL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-------IFKISTSNHDRLISDIMRIDPREII 198 ++NYLMAV + + IA+ D STG F S + +I RI P EI+ Sbjct: 122 KSDENNYLMAVYLKKYDMYIAYTDFSTGELYYTYRTFLDEESLFSSVRDEIYRIMPSEIL 181 Query: 199 FSE---KELSHAEYKSLFET-----------LGNVAVAQPNVFFDHSISESRIADYYNIT 244 +E K L+ + F T +G + + +E +++D I Sbjct: 182 VNEDIDKTLNKFLSNNFFITNYKNDDIVNIDIGKLVCENLTDLGQKNFNEKKLSDNIAIK 241 Query: 245 TVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILR 304 T+ + Y+ KTQ ++ I D L +D ++ LE+L+ Sbjct: 242 TL-----------------LDYLFKTQKIHLNHINNFNHYDYYKNLVLDENSKRTLELLK 284 Query: 305 TL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINP 363 L + +++ SLL+ +D T G RL + ++SPLT+ +I RL+ I F + ++ Sbjct: 285 GLNTNNKKGSLLEILDKCKTSMGSRLLKKWLSSPLTNIDRIEDRLNHIEDFNSDLLVTED 344 Query: 364 IQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGA-VE 422 I+ LK+ D+ R ++ PK+I I++ I + I L KN+ + +E Sbjct: 345 IKDRLKNIYDIERLSLKISNKTLNPKEINSIKETINLSLEIKKLLGKNNNNLKNLSVKIE 404 Query: 423 KLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L + + +++ + D ++ G LDE S +++ K I + + K Sbjct: 405 NLVFISEKIDQIIIDDPP----AIIEDERVIKKGYSLELDELFSAKEEGKDWILNFEKKE 460 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E+T IKNL+IK+N LGYFIEVT S+ S + D +I +QT+ R+ ++EL + Sbjct: 461 KEKTGIKNLRIKYNKILGYFIEVTKSNISQIPSD------YIRKQTLVGSERYFSVELKE 514 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 +E+++ + + AL ++ + L N ++E N S++I+ ID+ ++L+ +++ NY Sbjct: 515 MESKLLVSKDEALRLQSKILSELKNFLLENIIKFQNLSKIISAIDVLVSLSEVSRRNNYK 574 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 RP+++ +K GRHPIVEK K + F+ ND L DKN + ++TGPNM G Sbjct: 575 RPLLNKEGLIDIKKGRHPIVEKNYKDE---LFVPNDTYLDL--DKNL--IHIITGPNMAG 627 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI IMA +GS+VP YA+I ++D++F+R+G++DNLA G+STFMVEM E A+ Sbjct: 628 KSTYMRQVALITIMAHIGSFVPCEYANISVLDRIFTRIGASDNLAMGQSTFMVEMKEVAN 687 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 I++ A+ S +ILDE+GRGT+T DGLSIA+A +EY+ + + L ATH+HEL L + Sbjct: 688 IIDNASKNSLLILDEVGRGTSTYDGLSIAYAILEYIATNLKAKTLFATHYHELCSLEEKY 747 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 N ++ V E IIFL K+I G ++HSYGI V KLAG+ + +I RA+DIL + E Sbjct: 748 PSISNLSIAVKKEEEDIIFLRKIINGPSNHSYGIDVAKLAGIDDFIIKRAWDILNSLENN 807 Query: 843 YHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 N+ + +I E K+ F+EK+K ++++ +SP+ A K L Sbjct: 808 KGKNKLNKN---FKIDNFEQKSIFDIKKDKFIEKVKNIDINNLSPMDAFKML 856 >gi|313623816|gb|EFR93942.1| DNA mismatch repair protein MutS [Listeria innocua FSL J1-023] Length = 860 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 316/897 (35%), Positives = 503/897 (56%), Gaps = 67/897 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+EIK D+ +F+R+GDFYE+FF+DAL AS+ L ITLT R + IPMCG Sbjct: 5 TPMIKQYLEIKDKYQDAFLFFRLGDFYEMFFEDALNASQILEITLTGREGGTKEKIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A+ YI LI+ G+++AICEQ+E P + K +V+R VV+L++PGT+ +++ L Sbjct: 65 VPYHSASGYIDTLIEKGYKVAICEQVEDP-----KTTKGMVKREVVQLISPGTVMDERGL 119 Query: 146 SPTDSNYLMAVARIR-TEWAIAWIDISTGIFK--ISTSNHDRLISDIMRIDPREIIFSEK 202 ++NY+ ++ E+ A+ D+STG K + ++ DRLI+++ + RE+I SE Sbjct: 120 KAKENNYIASLYCYEGKEYGFAYSDLSTGELKSTVIEASEDRLINELTTLSTRELIVSEA 179 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 E E L +V Q + F S+ E N V S S EK A Sbjct: 180 EK---------EVLSDVMKEQLGLTF--SVHEEDTIPAENEKLVTRHMSLS--EKRAIGK 226 Query: 263 AISYIKKTQMVNKPTIGYPERE---DIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTI 318 + Y+K+TQ K +G+ ++ + + + +D ++ NLE+ ++ G R+ +LL + Sbjct: 227 LLHYLKETQ---KRDLGHLQQAIHYETSNYMKMDYYSKRNLELAESIRGKGRQGTLLWLL 283 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSI-----NFFIQNPILINPIQKILKSSPD 373 D + T GGR+ + I PL D +I R D + +FF + ++ N LK+ D Sbjct: 284 DNTQTAMGGRMLKQWIDRPLIDRKQIIERQDDVSELMAHFFERLELVEN-----LKNVYD 338 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLPQSL 431 + R R+ G +D+ +R+ + I L + + EL ++ ++L + L Sbjct: 339 LERLAGRVAYGNVNARDLIQLRNSLYQIPRIRATLLSMNSKSLTELANQLDPCEELTEKL 398 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 E+ + D P R+GG ++DG ++ LD R K IA L+ K E T IK + Sbjct: 399 EEAIV----DSAPISIREGGIIKDGYNSQLDTYRDASRNGKTWIAELERKERELTGIKTM 454 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 K+ N GY+IEVT ++ +L + R+ +QT++N R+ T EL + E I A Sbjct: 455 KVGFNRVFGYYIEVTRANTHLL-----PEGRYERKQTLANAERYITPELKEKEKLIFXAE 509 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 ++ +E + F + + + E L ++ ++ ID + A ++++ ++ RP + + Sbjct: 510 EKSMELEYQLFTEVREMVKDYIERLQKLAKSVSEIDCLQSFADISEKNHFIRPTLSEDGS 569 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 VK GRHP+VEK + QS ++ANDCDL D+N ++ L+TGPNM GKST++RQ A Sbjct: 570 LHVKQGRHPVVEKVMGAQS---YVANDCDL----DQNR-EILLITGPNMSGKSTYMRQVA 621 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 L I AQ+G +VPA A + I D++F+R+G+AD+L +G+STFMVEM+E + + AT S Sbjct: 622 LTAICAQVGCFVPAEEATLPIFDQIFTRIGAADDLIAGQSTFMVEMLEARNAIVHATKDS 681 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 ++ DEIGRGTAT DG+++A A IEY+HE + L +TH+HELTDL K L+ N + Sbjct: 682 LILFDEIGRGTATYDGMALAQAIIEYIHENVHAKTLFSTHYHELTDLEKELRGLQNIHVS 741 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE----KLYHHNQ 847 + N ++FLHK+ G AD SYGI V +LA LP ++I RA IL+ E K+ Sbjct: 742 AVEENGKVVFLHKIKEGPADKSYGIHVAELAELPKSLIERASRILEQLESNDKKIIITQD 801 Query: 848 KDMRLYYPEIQ-----TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 K + E+Q + K SK KL E I +N+ +M+P+ A+ LY +++ Sbjct: 802 KQPEEIHEEVQLSMFPVEPEKKASSKETKLLKE-IAAMNIMQMTPMDAMNKLYELQS 857 >gi|262376218|ref|ZP_06069448.1| DNA mismatch repair protein MutS [Acinetobacter lwoffii SH145] gi|262308819|gb|EEY89952.1| DNA mismatch repair protein MutS [Acinetobacter lwoffii SH145] Length = 842 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 314/862 (36%), Positives = 484/862 (56%), Gaps = 38/862 (4%) Query: 48 MGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAI 107 MGDFYELFF+DA A++ LGITLT RGK G+ IPM GVP H A Y+ +L+K G + I Sbjct: 1 MGDFYELFFEDAHKAAKILGITLTHRGKANGQPIPMAGVPYHAAEGYLARLVKKGETVVI 60 Query: 108 CEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAW 167 CEQI + K V R VVR++TPGTLT+D +L S+ L+A+ + + IA Sbjct: 61 CEQI------GEVTGKGPVERGVVRIITPGTLTDDAMLGAHQSSNLVALCIQQNQIGIAL 114 Query: 168 IDISTGIFKISTSNHD--RLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPN 225 +D+S G+FK+ ++D +L+ ++ R+ P EI+ E + L + L +P+ Sbjct: 115 LDLSAGLFKVQQQDYDLNQLMIELARLMPSEILLDESITDPTLTEQLKQQLDISVTKRPD 174 Query: 226 VFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPERE 284 V F+ + ++ + D + ++T+ FG + K AAAA I Y K+TQ P I + E Sbjct: 175 VDFNLNNAQKTLCDQFAVSTLSGFGIDHLPLAKAAAAALIHYAKETQKTALPHIRTIQLE 234 Query: 285 DIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKI 344 + +D R NLE++ L SL + I+ T GGRL + + PL D+ + Sbjct: 235 QSSDFIALDPVTRRNLELIEPLF-EHGTSLFQLINDCQTAMGGRLLSRTLMQPLRDTALL 293 Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 + RLD+I +Q P++ +LK D+ R LSR+ +G P+D+ +R + I Sbjct: 294 DERLDAIQALLQG-FHEAPVRLVLKEISDIERVLSRIALGSARPRDLVQLRQAC-AQIPF 351 Query: 405 LNLFLKNDLPEE----LRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADAS 460 L L+ + ++ L E+L L + L S + ++ P RDG + +G D+ Sbjct: 352 LRHALQPIVSQQQSTLLVQLNEELGDF-HGLHQRLMSAIVENPPVLLRDGNVIAEGFDSE 410 Query: 461 LDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESK 520 LDE R +RD + + + L++K E++ I LKI +N GY+IE+T + A ++ Sbjct: 411 LDELRQIRDHASQFLIDLEIKEREQSGIPGLKIGYNRVSGYYIELTRAQAE------QAP 464 Query: 521 DRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNAS 580 + +I RQT+ N R+ T EL E+++ ++ + AL E FE+L + + + SL S Sbjct: 465 EHYIRRQTLKNAERYITPELKAFEDKVLSSESRALAREKMLFEMLLDELRQDIGSLQMMS 524 Query: 581 QVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCD 640 IA ID+ A A+ +N+ RP + GRHP+VE S F ND Sbjct: 525 SAIAQIDLIANFAHQARLRNWSRPKFSPEIGVSITAGRHPVVEAL----SKSAFTPNDTR 580 Query: 641 LSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRV 700 L S ++ ++TGPNMGGKSTF+RQ ALIV++A G+YVPA A +G VD++F+R+ Sbjct: 581 LDF-----SHRMAIITGPNMGGKSTFMRQTALIVLLAYCGAYVPAQAATLGPVDRVFTRI 635 Query: 701 GSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHE 760 GSAD+L++G+STFMVEM ET+ IL+ AT+QS V++DE+GRGT+T DGLS+AWA + L + Sbjct: 636 GSADDLSTGKSTFMVEMTETSQILHHATSQSLVLMDEVGRGTSTYDGLSLAWACVLDLTK 695 Query: 761 TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGK 820 +C L ATH+ ELT+L K +N + + N +I LHKV G A S+G+QV K Sbjct: 696 RIQCLCLFATHYFELTELDKE-SGINNYHVTAKELNGNLILLHKVQHGPASQSHGLQVAK 754 Query: 821 LAGLPNTVISRAYDILKTFEKLYHHN----QKDMRLYYPEIQTKESKNNLSKNDKLFVEK 876 LAG+P VI A + LK EK + Q D+ PE+ + + + ++ Sbjct: 755 LAGIPAAVIKEAQNRLKILEKQHQAKPLSPQHDL-FAMPEVMEPIERIIEIEKESPALDL 813 Query: 877 IKCLNLDEMSPLTALKTLYAVK 898 ++ +++D ++P AL+ LYA+K Sbjct: 814 LEDIDVDSLTPREALQQLYALK 835 >gi|168214981|ref|ZP_02640606.1| DNA mismatch repair protein MutS [Clostridium perfringens CPE str. F4969] gi|170713592|gb|EDT25774.1| DNA mismatch repair protein MutS [Clostridium perfringens CPE str. F4969] Length = 909 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 297/833 (35%), Positives = 479/833 (57%), Gaps = 39/833 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY EIK D ++F+R+GDFYE+FF+DA A+R L + LT R L K PMCG Sbjct: 4 TPMMRQYFEIKENYKDCILFFRLGDFYEMFFEDAETAARELELVLTGRDCGLEKRAPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H +N YI +L+ G+++AICEQ+E P AK +V+R+V++++TPGT T+ + Sbjct: 64 IPFHASNSYIGRLVAKGYKVAICEQVEDPKVAK-----GIVKRDVIKVITPGTYTDSSFV 118 Query: 146 SPTDSNYLMAVARI--RTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREIIFSE 201 T +NY+M + R ++A DISTG F + ++ ++ +I + +P+EII + Sbjct: 119 EETKNNYIMTIYSDLERNRCSLAITDISTGDFLATEGELEKGVILDEISKFNPKEIILLD 178 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 L K + T + +P +F E + + N + S S + K ++ Sbjct: 179 S-LDQELIKDITLTTPALISRKPIEYF-----EEKFEEVLNAQFGEKSNSLSLMVKKSSN 232 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 A + YI TQ ++ I E + + ID ++R NLE+ L S++ SLL +D Sbjct: 233 ALVKYILDTQKISLTNINDIEVYSLVDFMTIDLSSRRNLELTENLREKSKKGSLLWVLDK 292 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G R+ I PL + KI RL+++ + L + +++ L D+ R L + Sbjct: 293 TETSMGSRMLRRWIEEPLVNKEKITLRLNAVEELFNDLSLNDSLKEALHDIYDIERILGK 352 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 + KD+ ++ I N+ + + L + ++ L+ + + LEK++ Sbjct: 353 ISNKNANAKDLIALKTSIGKIPNVKGIIENCTSSLLKNYHHNLDDLRDIYELLEKSIK-- 410 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 +D +DG ++DG ++ +DE R + K I+SL+ + E T IK+LK+ N Sbjct: 411 --EDPSLTLKDGDLIKDGFNSEIDELRLAKTNGKDWISSLENREREFTGIKSLKVGFNKV 468 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IE++ ++ S + + R+I +QT++N RF T EL ++E ++ A+ +E Sbjct: 469 FGYYIEISKANYSSI-----PEGRYIRKQTLANAERFITPELKEIEEKLLGASEKLCSLE 523 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F + N + + L +++IA +D LA +A E ++ +P I+ +++GR Sbjct: 524 YDIFLDIRNEVENHIDRLKTTAKIIAELDCISNLAFVALENDFIKPEINEDGETKIENGR 583 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VEK + + FI ND + +K+ +L ++TGPNM GKST++RQ ++I +M Q Sbjct: 584 HPVVEKVIPKGE---FIPNDTII----NKDDNQLLIITGPNMAGKSTYMRQVSIITLMCQ 636 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPAS A+I +VDK+F+R+G++D+LA G+STFMVEM E ++IL AT S V+LDE+ Sbjct: 637 IGSFVPASKANISVVDKIFTRIGASDDLAGGKSTFMVEMWEVSNILKNATENSLVLLDEV 696 Query: 739 GRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 GRGT+T DGLSIAW+ IEY+ + RC+ L ATH+HELT L + N ++ V + + Sbjct: 697 GRGTSTYDGLSIAWSVIEYICKNKNLRCKTLFATHYHELTKLEGEIHGVRNYSVAVKEVD 756 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 IIFL K+I G AD SYGI+V KLAG+P+ VI+RA +IL EKL + KD Sbjct: 757 NNIIFLRKIIEGGADQSYGIEVAKLAGIPDEVINRAKEIL---EKLEMESSKD 806 >gi|297614551|gb|ADI48582.1| putative DNA mismatch repair protein [uncultured bacterium fss6] Length = 858 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 305/883 (34%), Positives = 487/883 (55%), Gaps = 52/883 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 + + + TPMM+QY+ IK+ + D+L+FYRMGDFYELF+DDA A+ L I+LT RG G+ Sbjct: 9 QKISTHTPMMQQYLRIKAEHADTLLFYRMGDFYELFYDDAKRAAELLDISLTARGSSNGQ 68 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H A +Y+ +L+++G +AICEQI P +K V R VVR++TPGTL Sbjct: 69 PIPMAGVPYHAAENYLARLLELGESVAICEQIGDPAT-----SKGPVERQVVRILTPGTL 123 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREII 198 T++ LL N L+AV + IA +D+++G F + ++ ++L +++ R+ P E++ Sbjct: 124 TDEALLPAAQENLLVAV-NPGDNFGIACLDMASGRFTVLEAASREQLRAELERLQPAEVL 182 Query: 199 ------FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-S 251 FS+KEL+ + +P FD + SE + + + +D FG Sbjct: 183 YPETWQFSDKELN-----------CSCCRRRPEWEFDQASSEQLLLRQFQVAHLDGFGIR 231 Query: 252 FSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 AA A ++Y+K TQ P I E + +D+A R NLE++R+LSG + Sbjct: 232 HLHTAIGAAGAILNYVKATQRAALPHITSIVAERYDDAIMLDAATRRNLELVRSLSGQKT 291 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 +L +D + T G RL + PL +++ R +++ I + + + L+ Sbjct: 292 -ALFDVLDNTSTAMGSRLLQRWLQRPLRQHQQLSRRYNAVGAL--QHIDFHELHQQLRHI 348 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSL 431 D+ R L+R+ + P+D+A +R +++ +I L DL + A+ +L L Sbjct: 349 GDIERILTRIGLRSARPRDLARLRIALQTLPSIQELIEHPDLVV-WQQAIATFPELADLL 407 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 E+ + + P RDGG +RDG D LDE R L + + ++ + + T I L Sbjct: 408 EQAIV----EQPPMLIRDGGVIRDGFDEELDEQRQLAAGATDFLQQIETRERQRTGIMTL 463 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 KI +N GY++E + ++++ + D + RQT+ N R+ EL E+++ + Sbjct: 464 KIGYNKVHGYYLEASRAASAQIPAD------YQRRQTLKNAERYIIPELKTYEDKVLQSQ 517 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + AL E +E L I E + L + + +A ID+ + A A Y RP + Sbjct: 518 SRALAREKWLYENLIEQIAEHLQPLQHTAMALAEIDVLRSFAEQALTYQYQRPELVEQIQ 577 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 + D RHP++E+ L+Q+ PFIAND L+ P + L L+TGPNMGGKST++RQ A Sbjct: 578 IELSDARHPVIER-LQQE---PFIANDVSLT-PQQR----LLLITGPNMGGKSTYMRQTA 628 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 L+ IMA GS+VPA+ A G +D++F+R+G++D+LASGRSTFMVEM E A+IL+ AT++S Sbjct: 629 LLAIMAHCGSFVPATKAVFGPIDRIFTRIGASDDLASGRSTFMVEMTEAANILHNATDKS 688 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 V++DEIGRGT+T DGL++AWA E L + NR L ATH+ ELT N ++ Sbjct: 689 LVLMDEIGRGTSTYDGLALAWACAEALLDKNRALTLFATHYFELTQTIGHHDGALNVHVE 748 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR 851 ++ + I F HKV G A S+G+QV +LAGLP++V+ +A L+ E H+ + Sbjct: 749 ATEHGDTIAFQHKVKTGAASRSFGVQVAQLAGLPSSVLQQAKLYLQQLE----HDHHGVV 804 Query: 852 LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 P + F + + L++++++P+ AL L Sbjct: 805 EATPAKSSTVQVPLFEAQPSAFEQALADLDVNQLTPIEALTWL 847 >gi|224537020|ref|ZP_03677559.1| hypothetical protein BACCELL_01896 [Bacteroides cellulosilyticus DSM 14838] gi|224521387|gb|EEF90492.1| hypothetical protein BACCELL_01896 [Bacteroides cellulosilyticus DSM 14838] Length = 872 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 300/886 (33%), Positives = 497/886 (56%), Gaps = 41/886 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+Q++++K+ +PD+++ +R GDFYE + DA++A+ LGITLTKR GK + M G Sbjct: 9 TPMMKQFLDLKAKHPDAVMLFRCGDFYETYSTDAVVAAEILGITLTKRANGKGKTVEMAG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KL++ G R+AIC+Q+E P KK LV+R + LVTPG D +L Sbjct: 69 FPHHALDTYLPKLVRAGKRVAICDQLEDPKMTKK-----LVKRGITELVTPGVSINDNIL 123 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF--SEKE 203 + ++N+L AV + +A++DISTG F + D + + P+E++F ++ Sbjct: 124 NYRENNFLAAVHFGKGTCGVAFLDISTGEFLTAEGPFDYVDKLLNNFAPKEVLFERGKRG 183 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + + S F T + F + + ++ ++ + FG A+ A Sbjct: 184 MFEGNFGSKFFTF-----ELDDWVFTETTAREKLLKHFETKNLKGFGVEHLKNGIIASGA 238 Query: 264 I-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 I Y+ TQ I R + + +D +LE++ +++ SLL ID +I Sbjct: 239 ILQYLIMTQHTQIGHITSLARIEEDKYVRLDKFTVRSLELIGSMNDGG-SSLLNVIDKTI 297 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 + G RL + PL D IN RL+ + +F + P I++ L D+ R +S++ Sbjct: 298 SPMGARLLKRWLVFPLKDVLPINERLNVVEYFFRQPDFKELIEEQLHLIGDLERIISKVA 357 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 +GR P+++ ++ +++ I L+ D L E+L + +S+ + +++D Sbjct: 358 VGRVSPREVVALKVALQAIEPIKEACLEAD-NASLNRIGEQLN-ICKSIRDRIEKEINND 415 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P GG ++ G +A LDE R + K + +Q + +E T+I +LKI +NN GY+ Sbjct: 416 PPLLINKGGVMKSGVNAELDELRQIAYSGKDYLLQIQQRESELTEIPSLKIGYNNVFGYY 475 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IEV ++ + ++ +I +QT++N R+ T EL + E +I A + L++E + + Sbjct: 476 IEVRNTHKDKVPQE------WIRKQTLANAERYITQELKEYEEKILGAEDKILILETQLY 529 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 L A+ E ++ + IA +D ++ A +A+E NY RP+I+++ ++ GRHP++ Sbjct: 530 MELVQALSEFIPAIQVNANQIARLDCLLSFANVARENNYIRPVIEDNDVLDIRQGRHPVI 589 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 EK L + +IAND L D +S ++ ++TGPNM GKS LRQ ALI ++AQ+GS+ Sbjct: 590 EKQLP--IGEKYIANDVVL----DSSSQQIIIITGPNMAGKSALLRQTALITLLAQIGSF 643 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA AHIG+VDK+F+RVG++DN++ G STFMVEM E A ILN +++S V+ DE+GRGT Sbjct: 644 VPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNLSSRSLVLFDELGRGT 703 Query: 743 ATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 +T DG+SIAWA +E++HE + R L ATH+HEL ++ KS KR N + V + + +I Sbjct: 704 STYDGISIAWAIVEHIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEVDNKVI 763 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 FL K+ G ++HS+GI V K+AG+P +++ RA DILK E N++ P + Sbjct: 764 FLRKLERGGSEHSFGIHVAKMAGMPKSIVKRANDILKQLEA---DNRQQGIASKPMAEVG 820 Query: 861 ESKNNLSKNDKLFVEKIKC------LNLD--EMSPLTALKTLYAVK 898 E++ + + + + C LNLD ++PL AL L +K Sbjct: 821 ETRGGMQLSFFQLEDPVLCQIRDEILNLDVNNLTPLEALNKLNDIK 866 >gi|291542654|emb|CBL15764.1| DNA mismatch repair protein MutS [Ruminococcus bromii L2-63] Length = 859 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 302/889 (33%), Positives = 496/889 (55%), Gaps = 47/889 (5%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY +IK N DS++F+R+GDFYE+F+DDA LAS+ L +TLT R + PMCGVP Sbjct: 1 MMQQYFKIKEENKDSILFFRLGDFYEMFYDDAKLASKELELTLTGRDCGQAERAPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H+ YI +L+ G+++AICEQ E P +AK LV+R+++R++TPGT+ E +L Sbjct: 61 FHSCEGYIARLVAKGYKVAICEQTEDPAKAK-----GLVKRDIIRVITPGTVMESSMLDE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDR---LISDIMRIDPREIIFSEKE 203 + +NY+ + + + DISTG ++ +D L + + +PREI+ Sbjct: 116 SKNNYICCMYSKNKTIGLCFCDISTGELYATEIRGNDSYNVLTNQLTSYNPREILIGGDI 175 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ--VEKTAAA 261 + E + + V + D ES D D + + S V Sbjct: 176 VKLKELPKFIKAKLSAGV---EMLEDEKFDESVCTDVVKSQFEDEYSTVSDKSVVVCVLG 232 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT-LSGSREQSLLKTIDY 320 A +SY++ TQ I + E + +D + NLE+ +T L+ ++ SLL +D Sbjct: 233 ALLSYLRDTQKTGLERINHIEFYKENQYMSLDYNTQRNLELTQTMLTKDKKGSLLWVLDK 292 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G RL + PL + T IN R +I + + +L + L D+ R ++R Sbjct: 293 TKTAMGKRLMRSWLEHPLLNITSINNRQSAIEELVNDNMLRMDVTDTLSGIFDIERLMTR 352 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFL--KNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 + G +D+ + I++ I +L + K+ + + +++KL + + + S Sbjct: 353 IVYGSANARDLRSLCGAIQNLPQISDLLVDCKSVYLKYIYKSIDKL----EDIHSLIDSA 408 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + ++ P R+GG ++ G + LD + SK I+A ++ + + T I LK+ +N Sbjct: 409 IVEEPPFTVREGGMIKRGYNEELDSVTGDMNDSKGILARIEAEQRDITGIPKLKVGYNRV 468 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IEV++S S++ + +I +QT++N R+ T +L D+E RI A + ++ +E Sbjct: 469 FGYYIEVSNSYKSMVP------ETYIRKQTLTNCERYITQDLKDVEGRILGAKDRSVALE 522 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 F+ + + + E + ++ IA +D+ +LA +A + Y RP ++ ST +KD R Sbjct: 523 YNLFDDVRKTVSDNLERIQKTAKAIANLDVITSLANVAADNRYIRPDVNLSTAIRIKDSR 582 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE LK PF+ ND L ND+ + ++TGPNM GKST++RQ A+IV+MAQ Sbjct: 583 HPVVEALLKDA---PFVPNDVSLDSANDR----VAIITGPNMAGKSTYMRQIAIIVLMAQ 635 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPAS A IGIVD +F+RVG++D+LASG+STFMVEM E A+I+ AT++S +ILDEI Sbjct: 636 IGSFVPASSAEIGIVDSIFTRVGASDDLASGQSTFMVEMSEVANIIKNATSKSLLILDEI 695 Query: 739 GRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 GRGT+T DG+SIA A +E+ + + + L ATH+HELT + + L N + V Sbjct: 696 GRGTSTFDGMSIARAVLEFCADRKKLGAKTLFATHYHELTVMEQLLDGVKNYNIAVKKRG 755 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 + I FL +++PG AD SYGI+V KLAG+P +VISRA +ILK E + + Sbjct: 756 DDITFLRRIVPGGADDSYGIEVAKLAGIPQSVISRAKEILKDLEHGKYKKEN------AN 809 Query: 857 IQTKESKNNL-----SKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAW 900 IQ +++ +++ + +EK+K +++ ++P+ A+ LY +K Sbjct: 810 IQKQDNSDDMQLSLIGSAESPVIEKLKDTDINTLTPIEAMNLLYELKGM 858 >gi|167739298|ref|ZP_02412072.1| DNA mismatch repair protein [Burkholderia pseudomallei 14] Length = 939 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 307/883 (34%), Positives = 460/883 (52%), Gaps = 40/883 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ IKS +PD+LVFYRMGDFYELFF+DA A+R L +TLT+RG G I M G Sbjct: 69 TPMMQQYLRIKSEHPDTLVFYRMGDFYELFFEDAEKAARLLDLTLTQRGASAGTPIKMAG 128 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H Y+ KL+K G AICEQI P +K V R VVR+VTPGTLT+ LL Sbjct: 129 VPHHAVEQYLAKLVKFGESAAICEQIGDPAT-----SKGPVERKVVRVVTPGTLTDAALL 183 Query: 146 SPTDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 S +L+A+ + + +AW+++++G +++ D+L + + RI P EI+ Sbjct: 184 SDKSDVFLLALCVGHNKRGVASNIGLAWLNLASGALRLAELAPDQLGAALERIRPAEILA 243 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 ++ + +S+ +G + P FD + R+ D + ++D FG+ + Sbjct: 244 ADGTI-----ESVPAGMGAITRV-PAWHFDIASGTQRLCDQLEVASLDGFGAQALTSANG 297 Query: 260 AAAAIS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA A+ Y TQ + + E+ + +D + R NLE+ TL G+ +L + Sbjct: 298 AAGALLIYAAATQGQQLRHVRSLKVENESEYIGLDPSTRRNLELTETLRGTESPTLYSLL 357 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP--ILINPIQKILKSSPDVPR 376 D T G RL + P S R +I + P ++ ++ L+ DV R Sbjct: 358 DTCCTAMGSRLLRHWLHHPPRASVAAQARHQAIGALLDAPPNAGLDSLRSALRQIADVER 417 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 RL + P+D++ +RD + + + G +E + P L+ Sbjct: 418 ITGRLALLSARPRDLSSLRDTFAALPALRERVAEIASNAAALGRLEAALEPPPGCLDLLT 477 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 ++ + RDGG + G DA LDE R + + + + L+ + T I NL++++N Sbjct: 478 RAIAAEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLETRERARTGISNLRVEYN 537 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 G++IEVT + D + RQT+ N R+ T EL E++ +A AL Sbjct: 538 KVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTFEDKALSAQERALA 591 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 E ++ + A++ E + +A +D+ A A A+ ++ P + + Sbjct: 592 RERALYDGVLQALLPHIEGCQRVASGLAELDLLAAFAERARTLDWVAPEFTDEIGIEIDQ 651 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE ++Q FIANDC L+ KL L+TGPNMGGKSTF+RQ ALI +M Sbjct: 652 GRHPVVEAQVEQ-----FIANDCALN-----PERKLLLITGPNMGGKSTFMRQTALIALM 701 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+ILN AT S V++D Sbjct: 702 AYVGSYVPAKAARFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILNDATPHSLVLMD 761 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DGL++AWA +L NRC L ATH+ ELT L N L + Sbjct: 762 EIGRGTSTFDGLALAWAIARHLLSHNRCYTLFATHYFELTQLPAEFPHAANVHLSAVEHG 821 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN---QKDMRLY 853 GI+FLH V G A+ SYG+QV +LAG+P VI A L E+ Q D+ Sbjct: 822 HGIVFLHAVEEGPANQSYGLQVAQLAGVPAPVIRAARKHLAHLEQQSAAQATPQLDLFAA 881 Query: 854 YPEIQTKE-SKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 P + E ++ + +E++ L+ D++ P AL LY Sbjct: 882 PPVVDEPECNEPPAAATPHPALERLLELDPDDLKPRDALDLLY 924 >gi|322831415|ref|YP_004211442.1| DNA mismatch repair protein MutS [Rahnella sp. Y9602] gi|321166616|gb|ADW72315.1| DNA mismatch repair protein MutS [Rahnella sp. Y9602] Length = 851 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 308/880 (35%), Positives = 486/880 (55%), Gaps = 39/880 (4%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 NL + TPMM+QY+ +K+ NP+ L+FYRMGDFYELF+DDA AS+ + I+LTKRG G+ Sbjct: 6 NLDAHTPMMQQYLRLKAENPEVLLFYRMGDFYELFYDDAKRASQLMDISLTKRGASAGEP 65 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM GVP H Y+ KL+++G +AI EQI P +K V R VVR+VTPGT++ Sbjct: 66 IPMAGVPYHAVEGYLAKLVQLGESVAIAEQIGDPAL-----SKGPVERKVVRIVTPGTVS 120 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIF 199 ++ LLS N L A+ + + A +DIS+G F+++ + + + +++ R +P E+++ Sbjct: 121 DEALLSERHDNLLAAIWQDGRGFGYATLDISSGRFRVAQPDDLETMAAELQRTNPAELLY 180 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK-T 258 E E SL + + +P F+ ++ ++ + + FG + Sbjct: 181 PES----FEAMSLISSRRGLR-RRPMWEFELETAKQQLNLQFGTRDLSGFGVEQAAQALR 235 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA + Y+K TQ P I E Q + +D+A R NLE+ + L+G E +L + Sbjct: 236 AAGCLLQYVKDTQRTALPHIRGVTMERQQDGIIMDAATRRNLELTQNLAGGVENTLAAVL 295 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D ++T G R+ I P D + R +I +Q+ + +Q +L+ D+ R L Sbjct: 296 DQAVTPMGSRMLKRWIHMPSRDIKLLTHRQQAIGA-LQD--ITADLQPVLRQVGDLERIL 352 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 +RL + P+D+A +R ++ I + L+ ++ VE+ + +E L Sbjct: 353 ARLALRSARPRDLARMRHAMQQLPEIREI-LQGTEAAHVKTLVEQTGDFTELVE-LLERA 410 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + + P RDGG + G +A LDE R+L D + + L+++ E+ + LK+ N Sbjct: 411 VIESPPVLVRDGGVIAPGYNAELDEWRALADGATDYLDRLEIREREKLGLDTLKVGFNGV 470 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+I+V+ + ++ ++ RQT+ N R+ EL + E+++ + AL +E Sbjct: 471 HGYYIQVSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSKGKALSLE 524 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 +E L + ++ +L ++ +A +D+ LA A NY P + + GR Sbjct: 525 KALYEELFDLLMPHLSALQQSASALAELDVLSNLAERAYTLNYACPTMSEKPGINITGGR 584 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ L S+PFI+N ++S ++ ++TGPNMGGKST++RQ ALIV+MA Sbjct: 585 HPVVEQVL----SEPFISNPLNMSPAR-----RMLIITGPNMGGKSTYMRQAALIVLMAH 635 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GSYVPA A IG VD++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V++DEI Sbjct: 636 IGSYVPAEAAVIGPVDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVLMDEI 695 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + + Sbjct: 696 GRGTSTYDGLSLAWACAENLASRIKAMTLFATHYFELTTLPEKMEGTVNVHLDAIEHGDT 755 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 I F+H V G A SYG+ V LAG+P VI RA LK E L +N ++ P++ Sbjct: 756 IAFMHSVQDGAASKSYGLAVAALAGVPRDVIKRARQKLKELETL-SNNAAASKVDGPQLA 814 Query: 859 TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 L++ VE ++ L+ D +SP AL+ +Y +K Sbjct: 815 L------LTEEVSPAVEALESLDADSLSPRQALEWIYRLK 848 >gi|78189282|ref|YP_379620.1| DNA mismatch repair protein MutS [Chlorobium chlorochromatii CaD3] gi|90109843|sp|Q3AQZ8|MUTS_CHLCH RecName: Full=DNA mismatch repair protein mutS gi|78171481|gb|ABB28577.1| DNA mismatch repair protein MutS [Chlorobium chlorochromatii CaD3] Length = 873 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 317/890 (35%), Positives = 505/890 (56%), Gaps = 55/890 (6%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K +PMMRQY+E+K PD L+ +R+GDFYE FFDDA+ S L I LTKR DIP Sbjct: 9 KEHSPMMRQYLEVKERYPDYLLLFRVGDFYETFFDDAITVSTALNIVLTKRTA----DIP 64 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M G P H + YI KLIK G+++A+C+Q+E P +AK +VRR + +VTPG D Sbjct: 65 MAGFPYHASEGYIAKLIKKGYKVAVCDQVEDPADAK-----GIVRREITDIVTPGVTYSD 119 Query: 143 QLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFKISTSNHDRLISDIMRIDPREII 198 +LL +NYL VA ++ +A+ID++T F+I+T + L + + P EI+ Sbjct: 120 KLLDDRHNNYLAGVAFLKEGKTLMAGVAFIDVTTAEFRITTLLPEELPHFLAGLHPSEIL 179 Query: 199 FS--EKELSHAEYKSL-FETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG----S 251 FS EKE + KSL ETL +++ +P +F + S++ + ++ ++ FG Sbjct: 180 FSTQEKERTLLLKKSLPSETL--ISLLEPWMFSEEQ-SQTVLLRHFKTHSLKGFGIETAG 236 Query: 252 FSQVEKTAAAAAISYIKKTQMVNKPTIGYPER-EDIQSTLF--IDSAARSNLEILRTLS- 307 ++ AA + Y+++T+ + ++ Y R ++ T F +D + NLEI+ ++ Sbjct: 237 GNRAALVAAGVILQYLEETR---QNSLSYITRIGELHHTEFMSLDQQTKRNLEIISSMQD 293 Query: 308 GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI 367 GS SLL+ +D + G RL + PL T I R +++ ++N L + + Sbjct: 294 GSLSGSLLQVMDRTRNPMGARLLRRWLQRPLKKLTNIQERHNAVEELVENRTLRESVAEQ 353 Query: 368 LKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIR-SGINILNLFLKNDLPEELRGAVEKLKK 426 L + D+ RSL+R+ R P+++ + GI + I L L + L+ L+ Sbjct: 354 LAAINDLERSLARIATLRTIPREVRQL--GISLAAIPTLQALLSDVTAPRLQALTAALQP 411 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 LP+ L + + S + D RDGG++R G + LD+ RS+ +K + +Q + E T Sbjct: 412 LPK-LAEQIESAIDPDAGATMRDGGYIRAGYNEELDDLRSIASTAKDRLMQIQQEEREAT 470 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 I +LK+ +N GY+IE++ +++ + E K QT+ N R+T L + E + Sbjct: 471 AISSLKVSYNKVFGYYIEISRANSDKVPAYYEKK------QTLVNAERYTIPALKEYEEK 524 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 I +A +LL+E E F L I ++ ++ + ++A +D + A A +Y +P + Sbjct: 525 ILHAEEKSLLLEAELFRNLCQQIATEAATVQANAALLAELDALCSFAECAVAFDYTKPTM 584 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 T + GRHP++E+ L + S +I NDC +DK + + ++TGPNM GKS++ Sbjct: 585 HEGTTLSITAGRHPVLERLLGAEES--YIPNDCHF---DDKQT--MLIITGPNMAGKSSY 637 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 LRQ LIV++AQ GS+VPA A +G+VD++F+RVG++DNL SG STF+VEM E A+ILN Sbjct: 638 LRQIGLIVLLAQAGSFVPAESASLGVVDRIFTRVGASDNLTSGESTFLVEMNEAANILNN 697 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT +S ++LDEIGRGT+T DG+SIAW+ EY+ T + L ATH+HEL +L + LK Sbjct: 698 ATERSLLLLDEIGRGTSTFDGMSIAWSMCEYIVHTIGAKTLFATHYHELAELEERLKGVV 757 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK--LYH 844 N V ++ E +IFL K++ G D+SYGI+V K+AG+PN VISRA +IL EK + Sbjct: 758 NYNATVVETAERVIFLRKIVRGATDNSYGIEVAKMAGMPNDVISRAREILAGLEKRDVEI 817 Query: 845 HNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 QK ++ +I E +N +N ++ ++++ ++PL AL L Sbjct: 818 PRQKAPKVNTMQISLFEETDNQLRN------AVEAVDVNRLTPLEALLEL 861 >gi|16800508|ref|NP_470776.1| DNA mismatch repair protein MutS [Listeria innocua Clip11262] gi|38258216|sp|Q92BV3|MUTS_LISIN RecName: Full=DNA mismatch repair protein mutS gi|16413913|emb|CAC96671.1| DNA mismatch repair (recognition) [Listeria innocua Clip11262] Length = 860 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 312/894 (34%), Positives = 500/894 (55%), Gaps = 61/894 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+EIK D+ +F+R+GDFYE+FF+DAL AS+ L ITLT R + IPMCG Sbjct: 5 TPMIKQYLEIKDKYQDAFLFFRLGDFYEMFFEDALNASQILEITLTGREGGTKEKIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A+ YI LI+ G+++AICEQ+E P + K +V+R VV+L++PGT+ +++ L Sbjct: 65 VPYHSASGYIDTLIEKGYKVAICEQVEDP-----KTTKGMVKREVVQLISPGTVMDERGL 119 Query: 146 SPTDSNYLMAVARIR-TEWAIAWIDISTGIFK--ISTSNHDRLISDIMRIDPREIIFSEK 202 ++NY+ ++ E+ A+ D+STG K + ++ DRLI+++ + RE+I SE Sbjct: 120 KAKENNYIASLYCYEGKEYGFAYSDLSTGELKSTVIEASEDRLINELTTLSTRELIVSES 179 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 E E L +V Q + F S+ E N V S S EK A Sbjct: 180 EK---------EVLSDVMKEQLGLTF--SVHEEDTIPAENEKLVTRHMSLS--EKRAIGK 226 Query: 263 AISYIKKTQMVNKPTIGYPERE---DIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTI 318 + Y+K+TQ K +G+ ++ + + + +D ++ NLE+ ++ G R+ +LL + Sbjct: 227 LLHYLKETQ---KRDLGHLQQAIHYETSNYMKMDYYSKRNLELAESIRGKGRQGTLLWLL 283 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSI-----NFFIQNPILINPIQKILKSSPD 373 D + T GGR+ + I PL D +I R D + +FF + ++ N LK+ D Sbjct: 284 DNTQTAMGGRMLKQWIDRPLIDRKQIIERQDDVSELMAHFFERLELVEN-----LKNVYD 338 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R R+ G +D+ +R+ + I L + + L +L + EK Sbjct: 339 LERLAGRVAYGNVNARDLIQLRNSLYQIPRIRATLLSMN-SKSLTALANQLDPCEELTEK 397 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + D P R+GG ++DG ++ LD R K IA L+ K E T IK +K+ Sbjct: 398 -LEEAIVDSAPISIREGGIIKDGYNSQLDTYRDASRNGKTWIAELERKERELTGIKTMKV 456 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GY+IEVT ++ +L + R+ +QT++N R+ T EL + E I +A Sbjct: 457 GFNRVFGYYIEVTRANTHLL-----PEGRYERKQTLANAERYITPELKEKEKLILDAEEK 511 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 ++ +E + F + + + E L ++ ++ ID + A ++++ ++ RP + + Sbjct: 512 SMELEYQLFTEVREMVKDYIERLQKLAKSVSEIDCLQSFADISEKNHFIRPTLSEDGSLH 571 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 VK GRHP+VEK + QS ++ANDCDL D+N ++ L+TGPNM GKST++RQ AL Sbjct: 572 VKQGRHPVVEKVMGAQS---YVANDCDL----DQNR-EILLITGPNMSGKSTYMRQVALT 623 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 I AQ+G +VPA A + I D++F+R+G+AD+L +G+STFMVEM+E + + AT S + Sbjct: 624 AICAQVGCFVPAEEATLPIFDQIFTRIGAADDLIAGQSTFMVEMLEARNAIVHATKDSLI 683 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 + DEIGRGTAT DG+++A A IEY+HE + L +TH+HELTDL K L+ N + Sbjct: 684 LFDEIGRGTATYDGMALAQAIIEYIHENVHAKTLFSTHYHELTDLEKELRGLQNIHVSAV 743 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE----KLYHHNQKD 849 + N ++FLHK+ G AD SYGI V +LA LP ++I RA IL+ E K+ K Sbjct: 744 EENGKVVFLHKIKEGPADKSYGIHVAELAELPKSLIERASRILEQLESNDKKIIITQDKQ 803 Query: 850 MRLYYPEIQTK----ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + E+Q E + S + +++I +N+ +M+P+ A+ LY +++ Sbjct: 804 PEEIHEEVQLSMFPVEPEEKASSKETKLLKEIAAMNIMQMTPMDAMNKLYELQS 857 >gi|145297641|ref|YP_001140482.1| DNA mismatch repair protein MutS [Aeromonas salmonicida subsp. salmonicida A449] gi|189030439|sp|A4SIL2|MUTS_AERS4 RecName: Full=DNA mismatch repair protein mutS gi|142850413|gb|ABO88734.1| DNA mismatch repair protein MutS [Aeromonas salmonicida subsp. salmonicida A449] Length = 851 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 302/883 (34%), Positives = 477/883 (54%), Gaps = 43/883 (4%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN++ TPMM+QY+ +K+ NP+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG+ G Sbjct: 5 ENIQQHTPMMQQYLGLKAENPEILLFYRMGDFYELFYDDARKASQLLDISLTKRGQSAGN 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H Y+ KLI++G AICEQ+ P +K V R V+R++TPGT+ Sbjct: 65 PIPMAGVPYHAIEGYLAKLIQLGESAAICEQVGDPAT-----SKGPVERKVIRIITPGTV 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREII 198 +++ LLS N + AV + +DI +G F I+ + + L++++ R +P E++ Sbjct: 120 SDEALLSERQDNLIAAVYHDGRRFGYGTMDIGSGRFFINQFDKEETLLAELQRTNPAELL 179 Query: 199 FSEKE--LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 + E L H E + +P F+ + + + + FG S+ Sbjct: 180 YPESFAFLQHVEGRRGLRR-------RPEWEFELGTARKLLCQQFGTQDLVGFGVDKSET 232 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA + Y+K TQ P I E + +D+A R NLE+ + L+G E +L Sbjct: 233 ALCAAGCLMQYVKDTQRTALPHIRSVRLEQPDHAVIMDAATRRNLELTQNLAGGYENTLA 292 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 + +D + T G RL I P+ D + R +I I+ L + + +L+ DV Sbjct: 293 EVLDRTATPMGSRLLKRWIHQPIRDRVILKGRQSTIKELIEQN-LYDELGALLRQVGDVE 351 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R L+RL + P+D+ +R + + L L ++ E ++ E+ P+ L L Sbjct: 352 RVLARLALRSARPRDLTRLRQAF-AQLPELQRLLADNRHEAVQQLAERASTFPELL-SLL 409 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + + P RDGG +RDG + LDE R L + + + ++ + T I LK+ + Sbjct: 410 ERAVMEVPPVLIRDGGVIRDGFNQELDELRDLANGATASLVRIEEREKALTGINTLKVGY 469 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N G++IEV+ +++ ++ +I RQT+ N R+ EL E+++ A AL Sbjct: 470 NRVHGFYIEVSRANSHLVPA------HYIRRQTLKNNERYIIDELKKYEDKVLTAQAQAL 523 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E +E L + ++ L ++ +A +D+ LA A+ +Y P + + +++ Sbjct: 524 ALEKRLYEELLDTLLPHLGDLQESASALAELDVLANLAERAETLDYRCPTLIDEDQILIE 583 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ + S PFIAN L + ++ ++TGPNMGGKST++RQ ALIV+ Sbjct: 584 AGRHPVVEQVM----SDPFIANPIRL-----ERERRMLIITGPNMGGKSTYMRQTALIVL 634 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +A +G++VPA AHIG +D++F+R+G++D+LASGRSTFMVEM ETA+ILN AT +S V++ Sbjct: 635 LAHIGAFVPADSAHIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILNNATARSLVLM 694 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA E L L ATH+ ELT L + + N L + Sbjct: 695 DEIGRGTSTYDGLSLAWACAEQLASKIGAYTLFATHYFELTRLPELMSGLANVHLDAVEH 754 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 + I F+H V G A SYG+QV LAG+P +VI++A L E ++R Sbjct: 755 GDTIAFMHAVQEGAASRSYGLQVAALAGVPKSVINQARHKLAELESATPLATGEVR---- 810 Query: 856 EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L V++++ + DE++P AL +Y +K Sbjct: 811 -----PASIPLLPQSHPVVDELEAVRPDELTPRQALDLVYRLK 848 >gi|254282654|ref|ZP_04957622.1| DNA mismatch repair protein MutS [gamma proteobacterium NOR51-B] gi|219678857|gb|EED35206.1| DNA mismatch repair protein MutS [gamma proteobacterium NOR51-B] Length = 842 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 298/874 (34%), Positives = 475/874 (54%), Gaps = 40/874 (4%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY IK +P+ L+FYRMGDFYELF++DA +A++ L ITLT RGK G+ IPM GVP Sbjct: 1 MMQQYWGIKEQHPNELLFYRMGDFYELFYEDAQVAAKVLDITLTARGKSAGEPIPMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A +Y+ +L++ G+ +AI EQ P +K V R VVR+VTPGTL+++ LL Sbjct: 61 YHAAENYLARLVRAGYPVAIAEQKGDPAT-----SKGPVAREVVRVVTPGTLSDESLLDA 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKELSH 206 + + LMAV +AW+DIS+G F++S D L+S++ R+ P E++ E + Sbjct: 116 RNDSLLMAVYSQSDAHGLAWLDISSGRFRVSEVRGSDALLSELERLRPAELLIDENSVHE 175 Query: 207 A-EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAAAAAI 264 E++ QP+ FD S + + + + FG ++ AA + Sbjct: 176 GIEHRRGLRR-------QPSWAFDGSAAREMLNRQFQTRDLRGFGVEDMELAVRAAGCLL 228 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 Y+K TQ + P + + E + T+ +D+A R NLEI LSG +L ++ +IT Sbjct: 229 EYVKDTQRCSLPHLQGLQAESLGDTVVLDAATRRNLEIDINLSGGETHTLFSVLETTITA 288 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 G R + P+ D +N R D+I+ N ++ LK D+ R L+R+ +G Sbjct: 289 MGSRHLRRWLHRPVRDPEILNHRFDAIDALRSN-YGFETVRNALKPIADLERILARVALG 347 Query: 385 RGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLP 444 P+D++ + D + + + L L D P + +E L P+ +E L L D+ P Sbjct: 348 SARPRDLSRLADTL-AALPALRTTLPPDCPA-IDSLIEHLPDYPELVE-LLQRALVDNPP 404 Query: 445 TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIE 504 RDGG + +G D LDE R + + + ++ + E T++ LK+ +N GY+IE Sbjct: 405 VLIRDGGVIAEGYDTELDELRGISQNAGDYLLQIEQREREATELSTLKVGYNRVHGYYIE 464 Query: 505 VTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEI 564 ++ + + + + +I RQT+ N+ RF T EL E++ ++ + AL E +E Sbjct: 465 ISRAQSD------GAPEHYIRRQTLKNVERFITPELKAFEDKALSSKSRALSREKALYEE 518 Query: 565 LSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEK 624 L + E L ++ + +D+ A + ++CRP + + GRHP+VE Sbjct: 519 LISKTGEWLRPLQQTAEALCNLDVFACFAERSLALDFCRPEFSDQPVLDITHGRHPVVE- 577 Query: 625 TLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684 Q + PFI N+ L + ++ L+TGPNMGGKST++RQ ALI ++A +GS+VP Sbjct: 578 ---QLTETPFIPNNSRLD-----SQRRMLLITGPNMGGKSTYMRQTALIALLAHVGSFVP 629 Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744 AS A + +D++F+R+GS+D+LASGRSTFMVEM ETA+IL+ AT +S V++DE+GRGT+T Sbjct: 630 ASSAILSPLDRIFTRIGSSDDLASGRSTFMVEMTETANILHNATRRSLVLMDEVGRGTST 689 Query: 745 LDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHK 804 DGLSIAWA L + L ATH+ ELT L N L ++ + ++F+H+ Sbjct: 690 FDGLSIAWAAALDLAQRIEAFTLFATHYFELTALPTQCPGMANVHLDATEHEDHVVFMHQ 749 Query: 805 VIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKN 864 + G A+ S+G+QV +LAG+P V++ A + L E+ D + Sbjct: 750 IQEGPANRSFGLQVARLAGVPAPVLTNAAEKLAALER------GDTTTPVVPTPPPAQTD 803 Query: 865 NLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 S +++++ L+ D ++P AL LY +K Sbjct: 804 LFSGEPHPVLKQLQQLDPDTLTPREALDFLYKLK 837 >gi|153807044|ref|ZP_01959712.1| hypothetical protein BACCAC_01321 [Bacteroides caccae ATCC 43185] gi|149130164|gb|EDM21374.1| hypothetical protein BACCAC_01321 [Bacteroides caccae ATCC 43185] Length = 862 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 302/884 (34%), Positives = 493/884 (55%), Gaps = 41/884 (4%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+Q++++K+ +PD+++ +R GDFYE + DA++A+ LGITLTKR GK I M G P Sbjct: 1 MMKQFLDLKAKHPDAVMLFRCGDFYETYSTDAIVAAEILGITLTKRANGKGKTIEMAGFP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H + Y+ KL++ G R+AIC+Q+E P KK LV+R + LVTPG D +L+ Sbjct: 61 HHALDTYLPKLVRAGKRVAICDQLEDPKMTKK-----LVKRGITELVTPGVSINDNILNY 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF--SEKELS 205 ++N+L AV + +A++DISTG F + D + + P+EI+F ++ + Sbjct: 116 KENNFLAAVHFGKASCGVAFLDISTGEFLTAEGPFDYIDKLLNNFGPKEILFERGKRLMF 175 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI- 264 + S F T + F + + ++ ++ + FG A+ AI Sbjct: 176 EGNFGSKFFTF-----ELDDWVFTETTAREKLLKHFETKNLKGFGVEHLKNGIIASGAIL 230 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 Y+ TQ I R + + +D +LE++ +++ SLL ID +I+ Sbjct: 231 QYLTMTQHTQIGHITSLARIEEDKYVRLDKFTVRSLELIGSMNDG-GSSLLNVIDRTISP 289 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 G RL I PL D IN RL+ + +F + P I++ L D+ R +S++ +G Sbjct: 290 MGARLLKRWIVFPLKDEKPINERLNVVEYFFRQPDFKELIEEQLHLVGDLERIISKVAVG 349 Query: 385 RGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLP 444 R P+++ ++ +++ I L+ D L E+L L S+ ++ +++D P Sbjct: 350 RVSPREVVQLKVALQAIEPIKQACLEAD-NASLNRIGERLN-LCVSIRDRIAREINNDPP 407 Query: 445 TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIE 504 GG ++DG +A LDE R + K + +Q + +EET I +LK+ +NN GY+IE Sbjct: 408 LLINKGGVIKDGVNADLDELRRISYSGKDYLLQIQQRESEETGIPSLKVAYNNVFGYYIE 467 Query: 505 VTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEI 564 V + + K+ +I +QT+ N R+ T EL + E +I A + L++E + + Sbjct: 468 VRNVHKDKVPKE------WIRKQTLVNAERYITQELKEYEEKILGAEDKILVLETQLYTN 521 Query: 565 LSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEK 624 L A+ E + + IA +D ++ A +A+E NY RP+I+++ ++ GRHP++EK Sbjct: 522 LVQALTEFIPQIQVNANQIARLDCLLSFANVARENNYIRPVIEDNDVLDIRQGRHPVIEK 581 Query: 625 TLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684 L + +IAN+ L D ++ ++ ++TGPNM GKS LRQ ALI ++AQ+GS+VP Sbjct: 582 QLP--IGEKYIANNVML----DSSTQQIIIITGPNMAGKSALLRQTALITLLAQIGSFVP 635 Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744 A AHIG+VDK+F+RVG++DN++ G STFMVEM E A ILN +++S V+ DE+GRGT+T Sbjct: 636 AESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNVSSRSLVLFDELGRGTST 695 Query: 745 LDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFL 802 DG+SIAWA +EY+HE + R L ATH+HEL ++ KS KR N + V + + +IFL Sbjct: 696 YDGISIAWAIVEYIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEVDNKVIFL 755 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKES 862 K+ G ++HS+GI V K+AG+P +++ RA +ILK E N++ P + E+ Sbjct: 756 RKLERGGSEHSFGIHVAKMAGMPKSIVKRANEILKQLES---DNRQQGIAGKPLAEVSEN 812 Query: 863 KNNLSKNDKLFVEKIKC------LNLD--EMSPLTALKTLYAVK 898 + + + + I C LNLD ++P+ AL L +K Sbjct: 813 RGGMQLSFFQLDDPILCQIRDEILNLDVNNLTPIEALNKLNDIK 856 >gi|239826703|ref|YP_002949327.1| DNA mismatch repair protein MutS [Geobacillus sp. WCH70] gi|259511169|sp|C5D9H5|MUTS_GEOSW RecName: Full=DNA mismatch repair protein mutS gi|239806996|gb|ACS24061.1| DNA mismatch repair protein MutS [Geobacillus sp. WCH70] Length = 860 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 309/899 (34%), Positives = 507/899 (56%), Gaps = 65/899 (7%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPM++QY++IK+ PD+ +F+R+GDFYE+FFDDA+ A++ L ITLT R + + Sbjct: 1 MATYTPMIQQYLDIKAQYPDAFLFFRLGDFYEMFFDDAIKAAQELEITLTSRDGGGEERV 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A YI++LI G+++AICEQ+E P AK +VRR VV+L+TPGT+ E Sbjct: 61 PMCGVPYHSAQGYIEQLISKGYKVAICEQVEDPKTAK-----GVVRREVVQLITPGTVME 115 Query: 142 DQLLSPTDSNYLMAVARIRT-EWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIF 199 + L ++NYL V + A+ D+STG +I+ ++ D +++++ I +EI+ Sbjct: 116 GKGLLDKENNYLATVTMFDDGTYGFAYTDLSTGENRITLLASLDDVMNELYAIGTKEIVI 175 Query: 200 SEKELSHAEYKSLFETLGNVAVAQ------PNVFFDHSISESRIADYYNITTVDTFGSFS 253 S + +Y+ L + +V ++ P F SI E+ D IT FG Sbjct: 176 SSQ--FPEQYQQLLKERYDVTISYEDETVIPEGF--TSIVEALQQDKLKIT----FGRL- 226 Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQ 312 + YI +TQ + + + + ID ++ NLE+ T+ S R+ Sbjct: 227 ----------LHYIIRTQKRRLDHMQSVQVYQVDHYMKIDLYSKRNLELTETIRSKGRKG 276 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 SLL +D ++T GGRL + + PL D +I RL + I + +++ L+ Sbjct: 277 SLLWLLDETVTAMGGRLLKQWLDRPLLDRKQIERRLHMVETLIHHYFERQELRERLREVY 336 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE----ELRGAVEKLKKLP 428 DV R R+ G +D+ ++ ++ + ++ K LP+ +L ++ +L Sbjct: 337 DVERLAGRVAYGNVNARDLIQLKKSLQQIPALKDIVEK--LPDHEAKQLANKLDPCSELV 394 Query: 429 QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 LE+++ ++ P ++G ++DG + +LD R K IA L+ K E T I Sbjct: 395 DLLERSIQ----ENPPLSVKEGNIIKDGYNETLDRYRDASRNGKAWIAQLESKERELTGI 450 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 K+LKI +N GY+IEVT + +L K R+ +QT++N RF T EL + E I Sbjct: 451 KSLKIGYNRVFGYYIEVTKPNLHLL-----PKGRYERKQTLANAERFITQELKEKEALIL 505 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 A ++ +E E F + + + L + ++ I+ +D+ + A +++E++Y +P + Sbjct: 506 EAEEKSIELEYELFVDIRERVKQYIPRLQSLAKTISELDVLQSFATVSEERHYVKPQFSD 565 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 + I++ GRHP+VEK L Q+ ++ NDC ++ +L L+TGPNM GKST++R Sbjct: 566 NRELIIQAGRHPVVEKVLGAQT---YVPNDCYMN-----KERELLLITGPNMSGKSTYMR 617 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q AL VIMAQ+G +VPA A + I D++F+R+G+AD+L SG+STFMVEM+E + + AT Sbjct: 618 QIALTVIMAQIGCFVPAEKAVLPIFDQVFTRIGAADDLVSGQSTFMVEMLEARNAIVHAT 677 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA 788 S ++ DEIGRGT+T DG+++A A IEY+H+ + L +TH+HELTDL +SL + N Sbjct: 678 QNSLILFDEIGRGTSTYDGMALAQAIIEYIHDHIGAKTLFSTHYHELTDLEQSLAKLKNV 737 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 ++ + N ++FLHK+ G AD SYGI V +LA LP ++I RA +IL E+ ++ Sbjct: 738 HVRAVEENGKVVFLHKIEEGPADQSYGIHVAELAELPASLIQRAKEILAELEQQEQRKEQ 797 Query: 849 ---------DMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + E Q + +++LSK +K +E +K +NL E +PL AL LY ++ Sbjct: 798 PSGKNEAVFEQLSMFAEEQPSKEESHLSKKEKKALEALKSVNLLETTPLEALNKLYEIQ 856 >gi|283786713|ref|YP_003366578.1| DNA mismatch repair protein [Citrobacter rodentium ICC168] gi|282950167|emb|CBG89803.1| DNA mismatch repair protein [Citrobacter rodentium ICC168] Length = 853 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 310/889 (34%), Positives = 490/889 (55%), Gaps = 51/889 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 ENL + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENLDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPHHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWKDSKGYGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + AE S + + ++ I +R T D G F VE Sbjct: 180 Y-------AEDFSEMALIEGRRGLRRRPLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y+K TQ + P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYVKDTQRTSLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGVENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ L +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRILTERQQTIGA-LQD--LTAELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R L+RL + P+D+A +R + + L+ L+ ++ EK+ + + L + Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ-LPELHAQLEGVDSAPVQMLREKMGEFTE-LRE 405 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + D P RDGG + G + LDE R+L D + + L+++ E T + LK+ Sbjct: 406 LLERAIIDTPPVLVRDGGVIAPGYNEELDEWRALADGATDYLDKLEIRERERTGLDTLKV 465 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GY+I+++ + + + + RQT+ N R+ EL + E+++ + Sbjct: 466 GFNAVHGYYIQISRGQSHL------APINYTRRQTLKNAERYIIPELKEYEDKVLTSKGK 519 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E + ++ L + ++ L ++ +A ID+ + LA A NY PI + Sbjct: 520 ALALEKQLYDELFDLLLPHLADLQQSASALAEIDVLVNLAERAYTLNYTCPIFTDKPGIR 579 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + +GRHP+VE+ L ++PFIAN DLS ++ ++TGPNMGGKST++RQ ALI Sbjct: 580 ITEGRHPVVEQVL----NEPFIANPLDLSPQR-----RMLIITGPNMGGKSTYMRQTALI 630 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT+ S V Sbjct: 631 ALLAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATDNSLV 690 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L Sbjct: 691 LMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH---NQKDM 850 + + I F+H V G A SYG+ V LAG+P VI RA L+ E + + Q D Sbjct: 751 EHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESISPNAAATQVD- 809 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 810 -------GTQMSLLSIPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|313124269|ref|YP_004034528.1| DNA mismatch repair protein muts [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280832|gb|ADQ61551.1| DNA mismatch repair protein mutS [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325685683|gb|EGD27762.1| DNA mismatch repair protein HexA [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 856 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 302/879 (34%), Positives = 495/879 (56%), Gaps = 47/879 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K++TPMM QY +IK PD+ +FYR+GDFYEL+ DDA+ S+ L +TLT R IP Sbjct: 4 KATTPMMEQYYQIKDQYPDAFLFYRVGDFYELYEDDAIKGSQILELTLTHRSNKSENPIP 63 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP + Y+ L++ G+++AICEQ+E P +AK +V+R +++LVTPGT Sbjct: 64 MAGVPHMAVDSYVNTLVEKGYKVAICEQLEDPKKAK-----GMVKRGIIQLVTPGTKMAQ 118 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSE 201 +SNYL +V + +A+ D+STG IF + ++++++ + RE++F+ Sbjct: 119 GPDDSQESNYLTSVVEKAGGYGLAYSDLSTGEIFATHVKRYAEVVNELLSLRTREVVFA- 177 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 LS ++ L + N+ V++P +Y I+ V + S +EK A Sbjct: 178 GNLSASDRDRLQK--ANITVSEPAELE---------GEYAEISYVQQKLTDS-MEKAAVR 225 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDY 320 + Y+ TQ + + E +I L + + + NLE+ ++ + R+Q SL +D Sbjct: 226 QLVVYLLATQKRSLAHLQVAESFEIGQYLQMANTVQRNLELTQSATTGRKQGSLFWVLDK 285 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGRL + ++ PL +I R + + + I LK D+ R R Sbjct: 286 TTTAMGGRLLKQWLSRPLLSLDRIKQRQQMVQALLDDYFTRENIVDSLKGVYDLERLSGR 345 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL--PQS-LEKTLSS 437 + G P+++ + + + I+ ++ P+ +EK + PQS L +++++ Sbjct: 346 VAFGNVNPRELLQLAKSLEATKPIIQALAESGNPD-----LEKYGQGIDPQSELAESITN 400 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 L D P +DGG +R G LD+ R + K+ +A ++++ + T I NLKI +N Sbjct: 401 CLVDQPPISAKDGGIIRAGVSEDLDKYREAMNGGKKWLAQMEMEERQRTGIDNLKIGYNR 460 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GYFI+V+ + + + +DR+ +QT++N R+ T EL + EN I A + + + Sbjct: 461 VFGYFIQVSKGNVAKV-----PQDRYTRKQTLTNAERYITPELKEHENLILEAESRSTDL 515 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E E F L A+ +L + +A +D+ +A A A+E+NYCRP + VK+G Sbjct: 516 EYELFSQLREAVKAHIPALQELGRQLAALDVFVAFAQDAEEKNYCRPSFSSKNEIAVKNG 575 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE L S +I ND + D+++ ++L+TGPNM GKST++RQ ALI IMA Sbjct: 576 RHPVVEAVLPAGS---YIPNDLVM----DEDT-SIYLITGPNMSGKSTYMRQLALIAIMA 627 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+GS+VPA A + + D++F+R+G+AD+L SG+STFMVEM E L A+++S V+ DE Sbjct: 628 QIGSFVPADSAKLPVFDQVFTRIGAADDLYSGKSTFMVEMSEANEALQHASSRSLVLFDE 687 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGTAT DG+++A A I+YLH+ + L ATH+HELT+L ++L N + ++ N Sbjct: 688 IGRGTATYDGMALAGAIIKYLHDKVGAKTLFATHYHELTELDETLPHLKNIHVGATEENG 747 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE----KLYHHNQKDMRLY 853 +IFLHK++PG AD SYGI V KLAGLP V+ A +LK E + + +++ + L+ Sbjct: 748 QLIFLHKILPGPADQSYGIHVAKLAGLPRAVLREASSMLKRLEAEGAREINPSRQQLDLF 807 Query: 854 YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALK 892 P ++ E +N L + +++I +NL+E +PL ++ Sbjct: 808 SP-VEVVE-ENPLKAEQEELLDEISQVNLNEKTPLEVMQ 844 >gi|224499741|ref|ZP_03668090.1| DNA mismatch repair protein [Listeria monocytogenes Finland 1988] gi|254829838|ref|ZP_05234493.1| DNA mismatch repair protein MutS [Listeria monocytogenes 10403S] Length = 860 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 316/892 (35%), Positives = 496/892 (55%), Gaps = 57/892 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+EIK D+ +F+R+GDFYE+FF+DAL AS+ L ITLT R + IPMCG Sbjct: 5 TPMIKQYLEIKDKYQDAFLFFRLGDFYEMFFEDALNASQILEITLTGREGGTKEKIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A+ YI LI+ G+++AICEQ+E P + K +V+R VV+L++PGT+ +++ L Sbjct: 65 VPYHSASGYIDTLIEKGYKVAICEQVEDP-----KTTKGMVKREVVQLISPGTVMDERGL 119 Query: 146 SPTDSNYLMAVARIR-TEWAIAWIDISTGIFK--ISTSNHDRLISDIMRIDPREIIFSEK 202 ++NY+ ++ E+ A+ D+STG K + ++ DRLI+++ + RE+I S Sbjct: 120 KAKENNYIASLYCYEGKEYGFAYSDLSTGELKSTVIEASEDRLINELTTLSTRELIVSSS 179 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 E E L +V Q + F S+ E N V S S EK A Sbjct: 180 EK---------EVLSDVMKEQLGLTF--SVHEEDTIPAENEKLVTRHMSLS--EKRAIGK 226 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDYS 321 + Y+K+TQ + + + + + +D ++ NLE+ ++ G R+ +LL +D + Sbjct: 227 LLHYLKETQKRDLGHLQQAVHYETSNYMKMDYYSKRNLELAESIRGKGRQGTLLWLLDNT 286 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSI-----NFFIQNPILINPIQKILKSSPDVPR 376 T GGR+ + I PL D KI R + + +FF + ++ N LK+ D+ R Sbjct: 287 QTAMGGRMLKQWIDRPLIDRKKIIERQNDVSELMAHFFERLELVEN-----LKNVYDLER 341 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 R+ G +D+ +R+ + I L E L E+L + EK L Sbjct: 342 LAGRVAYGNVNARDLIQLRNSLYQIPRIRATLLSMS-SESLTELAEQLDPCEELTEK-LE 399 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + D P R+GG ++DG ++ LD R K IA L+ K E T IK LK+ N Sbjct: 400 EAIMDSAPISIREGGIIKDGYNSQLDTYRDASRNGKTWIAELERKERELTGIKTLKVGFN 459 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+IEVT ++ +L + R+ +QT++N R+ T EL + E I +A ++ Sbjct: 460 RVFGYYIEVTRANTHLL-----PEGRYERKQTLTNAERYITPELKEKEKLILDAEEKSME 514 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E + F + + + E L ++ ++ ID + A ++++ ++ RP + + VK Sbjct: 515 LEYQLFSEVREMVKDYIERLQKLAKSVSEIDCLQSFADISEKNHFIRPTLSEDGSLHVKQ 574 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VEK + QS ++ANDCDL D+N ++ L+TGPNM GKST++RQ AL I Sbjct: 575 GRHPVVEKVMGAQS---YVANDCDL----DENR-EILLITGPNMSGKSTYMRQVALTAIC 626 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+G +VPA A + I D++F+R+G+AD+L +G+STFMVEM+E + + AT S ++ D Sbjct: 627 AQVGCFVPAEEAILPIFDQIFTRIGAADDLIAGQSTFMVEMLEARNAIVHATKDSLILFD 686 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGTAT DG+++A A IEY+HE + L +TH+HELTDL K L+ N + + N Sbjct: 687 EIGRGTATYDGMALAQAIIEYIHENVHAKTLFSTHYHELTDLEKELRGLQNIHVSAVEEN 746 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE----KLYHHNQKDMRL 852 ++FLHK+ G AD SYGI V +LA LP ++I RA IL+ E K+ + K Sbjct: 747 GKVVFLHKIKEGPADKSYGIHVAELAELPKSLIERASRILEQLENDDKKIIIASVKQPEE 806 Query: 853 YYPEIQ-----TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + E+Q + K SK KL E I +N+ +M+P+ A+ LY +++ Sbjct: 807 VHEEVQLSMFPVEPEKKASSKETKLLKE-IASMNIMQMTPMDAMNKLYELQS 857 >gi|330997284|ref|ZP_08321137.1| DNA mismatch repair protein MutS [Paraprevotella xylaniphila YIT 11841] gi|329571079|gb|EGG52786.1| DNA mismatch repair protein MutS [Paraprevotella xylaniphila YIT 11841] Length = 873 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 304/893 (34%), Positives = 498/893 (55%), Gaps = 52/893 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TPMM+Q+ ++K+ +PD+++ +R GDFYE + +DA++AS LGITLTKR G G+ + M Sbjct: 7 TPMMKQFYDLKAKHPDAIMLFRCGDFYETYCEDAVVASEILGITLTKRSNGGRNGEPVEM 66 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G P H + Y+ KLI+ G R+AIC+Q+E P + K+LV+R + LVTPG D Sbjct: 67 AGFPYHALDTYLPKLIRAGRRVAICDQLEDP-----KLTKTLVKRGITELVTPGVSMNDN 121 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 +LS ++N+L AV + +A++DISTG F + + + + P+E++F + Sbjct: 122 VLSYKENNFLAAVHFNKNVCGVAFLDISTGEFLTAEGTAEYVDKLLGNFSPKEVLFERGK 181 Query: 204 LSHAEYKSLFETLGNVAVA------QPNVFFDHSISESRIADYYNITTVDTFG-SFSQVE 256 ++LFE GN VF + S +E ++ ++ + + FG + Sbjct: 182 ------RNLFE--GNFGTKFFTFELDDWVFSERSATE-KLLKHFEVKNLKGFGIDHLKCG 232 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 A+ + Y++ TQ I R + + + +D NLE+L ++ SLL Sbjct: 233 IVASGVILQYLEMTQHSQIGHITSISRIEEERYVRLDKFTVRNLELLNSMVDGG-NSLLG 291 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 ID +IT G RL I PL D +N RLD +++F + P + L D+ R Sbjct: 292 VIDRTITPMGARLMRRWILFPLKDEKPVNERLDVVDYFFREPEFKELVSDQLHLMGDLER 351 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 +S++ +GR P+D+ ++ +++ I + + ++ E L+ E+L L S+ ++ Sbjct: 352 IISKVSVGRVSPRDVVQLKVALQA-IEPIKIACEHASDETLKRIGEQLN-LCASIRDRIA 409 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + +D P GG + +G D LDE R + + K + +Q + E T I +LKI +N Sbjct: 410 REIQNDPPLLVNKGGVIAEGVDRELDELRHIAFEGKDYLLKIQQRETELTGIPSLKISYN 469 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 N GY++EV ++ + D +I +QT+ N R+ T EL + E +I A + L+ Sbjct: 470 NVFGYYLEVRNTHKDKVPAD------WIRKQTLVNAERYITQELKEYEEKIMGAQDKILV 523 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E + + L A+ E + ++ + ++A +D ++ A +A++ Y RP+I + +K Sbjct: 524 LETKLYNELVLALAEFTPAIQINANLLARLDCLLSFAQVAQDNRYIRPVIQDDDVLDIKQ 583 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP++EK L + +IAND L D ++ ++TGPNM GKS LRQ ALI +M Sbjct: 584 GRHPVIEKELP--VGEQYIANDVYL----DTEKQQIIIITGPNMAGKSALLRQTALITLM 637 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+G +VPA AHIG+VDK+F+RVG++DN++ G STFMVEM E A+ILN +++S V+ D Sbjct: 638 AQIGCFVPAESAHIGLVDKIFTRVGASDNISMGESTFMVEMNEAANILNNISSRSLVLFD 697 Query: 737 EIGRGTATLDGLSIAWATIEYLHET--NRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 E+GRGT+T DG+SIAWA +EY+HE + R L ATH+HEL ++ K R N + V + Sbjct: 698 ELGRGTSTYDGISIAWAIVEYIHENKKGKARTLFATHYHELNEMEKLYSRVKNYNVSVRE 757 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD-MRLY 853 ++ +IFL K+ G ++HS+GI V KLAG+P +++SRA ILK E N KD M+ Sbjct: 758 VDQKVIFLRKLERGGSEHSFGIHVAKLAGMPKSIVSRANTILKELES---ANSKDVMKNS 814 Query: 854 YPEIQTKESKNNLSKNDKLFVEKIKC--------LNLDEMSPLTALKTLYAVK 898 Q ++ N + + + + C L+++ ++P+ AL L +K Sbjct: 815 RGAKQVMQADNGVQLSFFQLDDPVLCQIRDEILHLDINNLTPVEALNKLNDIK 867 >gi|197118138|ref|YP_002138565.1| DNA mismatch repair protein MutS [Geobacter bemidjiensis Bem] gi|238690862|sp|B5EA63|MUTS_GEOBB RecName: Full=DNA mismatch repair protein mutS gi|197087498|gb|ACH38769.1| DNA mismatch repair ATPase MutS-1 [Geobacter bemidjiensis Bem] Length = 837 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 295/825 (35%), Positives = 456/825 (55%), Gaps = 63/825 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL-GKDIPMC 84 TPMMRQ++EIK+ +PD+++F+R GDFYE+F DDA+ ASR LGITLT R K+ G ++P+C Sbjct: 5 TPMMRQFLEIKAEHPDAILFFRCGDFYEMFLDDAVKASRILGITLTSRNKNADGSEVPLC 64 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H+ YI KL++ G ++AICEQ E P +AK +V+R VV+++TPG + ED Sbjct: 65 GVPYHSCAPYIAKLVEAGEKVAICEQAEDPKQAK-----GIVKREVVKVITPGLVIEDAS 119 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEKE 203 LSP ++NYL+A+ + ++++D+STG F+++ + ++++ I PREII Sbjct: 120 LSPKENNYLLALCCDGECYGLSYLDLSTGEFRVTELDGLQAALAELTCIGPREIILPVSF 179 Query: 204 LSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAAA 261 + K + + + ++ +D + +A+ + T ++ G + AA Sbjct: 180 REEPKRKEVAHVIVDRSITYFEEWVYDPDYCKRLVANQFKGATAESLGCDRLPIALLAAG 239 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQSLLKTIDY 320 A + Y+ TQ + P + + L +D + R NLE+ TLS G R+ SLL +D Sbjct: 240 AVLHYLVDTQKGHAPHVTGITPYNENEHLLLDESTRRNLELTATLSEGKRKGSLLGLMDR 299 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 ++T GGR + I PL D KI R D+I ++ P ++ +L D+ R R Sbjct: 300 TVTAMGGRKLKQWINYPLMDLKKIWLRQDAIQELMEAPGTREAMKSLLAGVYDLERLNGR 359 Query: 381 LKIGRGEPKDIAVIRDGIR--SGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 + + KD++ +R + I L +EL ++ L +L +S Sbjct: 360 ISLASASAKDLSALRSSLSRLPAIKEQVAACGAGLLKELNAGIDPLDELCD----LISRA 415 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + DD P RDGG + DG + LDE R++ + K IA L+ + T I +LKI++N Sbjct: 416 IVDDPPFVLRDGGIIADGYNQELDELRAISREGKGFIARLEAQEKGRTGISSLKIRYNKV 475 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IEVT ++ S + D +I RQT++N R+ T EL + E ++ A + +E Sbjct: 476 FGYYIEVTKANVSAIPDD------YIRRQTLANAERYITPELKEYEEKVLGAEDRIKDLE 529 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 F+ + A Q E + + +A +D+ +L+ LA ++ YCRP + + + +GR Sbjct: 530 FSLFQEVREAAAAQGERIARTADRLACLDVLASLSELAHDKGYCRPEVHEGSELSITEGR 589 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+++ SS+ F+ ND L D +L ++TGPNM GKSTF+RQ ALI +MAQ Sbjct: 590 HPVIDD---MHSSERFVPNDTLL----DNGENQLIIITGPNMAGKSTFMRQVALISLMAQ 642 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 MGS+VPA A I +VD++F+RVG++DNLA Sbjct: 643 MGSFVPADKALIPLVDRIFTRVGASDNLA------------------------------- 671 Query: 739 GRGTATLDGLSIAWATIEYLHET--NRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 RGT+T DG+SIAWA E+LH+ + + L ATH+HELT+L+ + N + V + N Sbjct: 672 -RGTSTFDGVSIAWAVAEFLHDNKMHAAKTLFATHYHELTELAVTRPGIKNFNIAVREWN 730 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 E IIFL K++PG A HSYGIQV +LAGLP VI RA +IL EK Sbjct: 731 ERIIFLRKIVPGGASHSYGIQVARLAGLPQAVIERAKEILVNLEK 775 >gi|237717006|ref|ZP_04547487.1| DNA mismatch repair protein mutS [Bacteroides sp. D1] gi|262405774|ref|ZP_06082324.1| DNA mismatch repair protein MutS [Bacteroides sp. 2_1_22] gi|294648045|ref|ZP_06725590.1| DNA mismatch repair protein MutS [Bacteroides ovatus SD CC 2a] gi|294810446|ref|ZP_06769102.1| DNA mismatch repair protein MutS [Bacteroides xylanisolvens SD CC 1b] gi|229442989|gb|EEO48780.1| DNA mismatch repair protein mutS [Bacteroides sp. D1] gi|262356649|gb|EEZ05739.1| DNA mismatch repair protein MutS [Bacteroides sp. 2_1_22] gi|292636552|gb|EFF55025.1| DNA mismatch repair protein MutS [Bacteroides ovatus SD CC 2a] gi|294442333|gb|EFG11144.1| DNA mismatch repair protein MutS [Bacteroides xylanisolvens SD CC 1b] Length = 872 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 305/887 (34%), Positives = 494/887 (55%), Gaps = 43/887 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+Q++++K+ +PD+++ +R GDFYE + DA++A+ LGITLTKR GK I M G Sbjct: 9 TPMMKQFLDLKAKHPDAVMLFRCGDFYETYSTDAIVAAEILGITLTKRANGKGKTIEMAG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KL++ G R+AIC+Q+E P KK LV+R + LVTPG D +L Sbjct: 69 FPHHALDTYLPKLVRAGKRVAICDQLEDPKMTKK-----LVKRGITELVTPGVSINDNVL 123 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 + ++N+L AV + +A++DISTG F + D + + P+EI+F + Sbjct: 124 NYKENNFLAAVHFGKASCGVAFLDISTGEFLTAEGPFDYIDKLLNNFAPKEILFERGK-- 181 Query: 206 HAEYKSLFE-TLGN--VAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 + +FE GN + F + + ++ ++ + FG A+ Sbjct: 182 ----RLMFEGNFGNKFFTFELDDWVFTETTAREKLLKHFETKNLKGFGVEHLKNGIIASG 237 Query: 263 AI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 AI Y+ TQ I R + + +D +LE++ ++ SLL ID + Sbjct: 238 AILQYLTMTQHTQIGHITSLARIEEDKYVRLDKFTVRSLELIGNMNDGG-SSLLNVIDRT 296 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 I+ G RL + PL D IN RL+ + +F + P I++ L D+ R +S++ Sbjct: 297 ISPMGARLLKRWMVFPLKDEKPINERLNVVEYFFRQPDFKELIEEQLHLIGDLERIISKV 356 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 +GR P+++ ++ +++ I ++ D L E+L L S+ ++ + + Sbjct: 357 AVGRVSPREVVQLKVALQAIEPIKQACMEAD-NASLNRIGEQLN-LCISIRDRIAKEIKN 414 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 D P GG ++DG +A LDE R + K + +Q + +EET I +LK+ +NN GY Sbjct: 415 DPPLLINKGGVIQDGVNADLDELRQISYSGKDYLLKIQQRESEETGIPSLKVAYNNVFGY 474 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IEV + + KD + +I +QT+ N R+ T EL + E +I A + L++E + Sbjct: 475 YIEVRN-----VHKD-KVPPEWIRKQTLVNAERYITQELKEYEEKILGAEDKILVLETQL 528 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 + L A++E + + IA +D ++ A +A+E Y RPII+++ ++ GRHP+ Sbjct: 529 YTDLVQALMEFIPQIQINANQIARLDCLLSFANVARENRYIRPIIEDNDVLDIRQGRHPV 588 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 +EK L + +IAND L D ++ ++ ++TGPNM GKS LRQ ALI ++AQ+GS Sbjct: 589 IEKQLP--IGEKYIANDVML----DSDTQQIIIITGPNMAGKSALLRQTALITLLAQIGS 642 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA AHIG+VDK+F+RVG++DN++ G STFMVEM E A ILN +++S V+ DE+GRG Sbjct: 643 FVPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNVSSRSLVLFDELGRG 702 Query: 742 TATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 T+T DG+SIAWA +EY+HE + R L ATH+HEL ++ KS KR N + V + + + Sbjct: 703 TSTYDGISIAWAIVEYIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEVDNKV 762 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 IFL K+ G ++HS+GI V K+AG+P +++ RA +ILK E N++ P + Sbjct: 763 IFLRKLERGGSEHSFGIHVAKMAGMPKSIVKRANEILKQLES---DNRQQGIAGKPLAEV 819 Query: 860 KESKNNLSKNDKLFVEKIKC------LNLD--EMSPLTALKTLYAVK 898 E++ + + + I C LNLD ++P+ AL L +K Sbjct: 820 SENRGGMQLSFFQLDDPILCQIRDEILNLDVNNLTPIEALNKLNDIK 866 >gi|225847846|ref|YP_002728009.1| DNA mismatch repair protein MutS [Sulfurihydrogenibium azorense Az-Fu1] gi|225644744|gb|ACN99794.1| DNA mismatch repair protein MutS [Sulfurihydrogenibium azorense Az-Fu1] Length = 855 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 320/893 (35%), Positives = 509/893 (56%), Gaps = 61/893 (6%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 ENL TPM+ QY +IK+ D L+ YR+GDFYELF++DA++ S+ L I LTK+ K Sbjct: 2 ENL---TPMVAQYHKIKAQYQDCLLLYRLGDFYELFYEDAVIGSKELNIVLTKKKISKDK 58 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 DIPMCG+P H+A+ YI +L+ G+++AICEQ+E +AK +V+R+V+R++TPGT Sbjct: 59 DIPMCGIPYHSADSYITRLVSKGYKVAICEQLEDASKAK-----GVVKRDVIRVITPGTY 113 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 +++ + L AV + ++AIA++D++TG F + N + LIS I + P+EI+ Sbjct: 114 FDNEKIKSG----LAAVYKKSDKYAIAFLDLATGEFYATVLNKEDLISFISKFSPKEILT 169 Query: 200 ---SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 ++ + EYK F + P FF+ + + +++ ++ +FG F+ E Sbjct: 170 PPQTDISFLNQEYKGFFH------YSLPEYFFEKDYQQEFL-NHFKTKSITSFG-FNHFE 221 Query: 257 KT----AAAAAISYIKKTQMVNKPTIGYPE--REDIQSTLFIDSAARSNLEILRTLSGSR 310 + +A +Y K TQ P I P+ RED + +D + +LE++ S Sbjct: 222 EELIIRPLSAVFNYAKITQKSFLPYISPPKPYRED--KYMKLDYSTIKHLELVS--SQEH 277 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 SLL I+ +ITG G R + PL + +I R D+I QN L I++ L Sbjct: 278 NPSLLSVINKAITGMGKRKIKFMLLHPLLNIQEIKDRQDAIEELTQNHTLREEIRQHLDK 337 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS 430 D+ R ++++ PKD+ +R+ ++ +I L K+ L L+ V+ L Q Sbjct: 338 VYDIERLVAKITSNTLTPKDMVALRESLKKVKDIKKLSPKSKL---LKNIVDSLNPHTQL 394 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 ++K L L D+ P ++GG ++ G D LDE +SL++ ++ II Q + E+TKI + Sbjct: 395 VDK-LERYLEDNPPFHLKEGGLIKKGVDERLDELKSLKENAEEIIRQYQEQEREKTKISS 453 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LKI N +GY+IE+T + ++ + +QT+SN RFTT L LE++I +A Sbjct: 454 LKIGFNKVMGYYIEITKPNLKLVPP------YYKRKQTLSNAERFTTDYLQQLEDKILSA 507 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 +E E F + ++ S ++ ++++ +D LA +A E+++ RP I N Sbjct: 508 DEKIKALEYEIFTQVREEVVNHSFEIEETARLLGYLDALAGLAQVAVEKSWIRPQIHNGY 567 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 + +++G HP V SK F+ N S D+N ++TGPNM GKST++RQ Sbjct: 568 HLFIEEGYHPTV-----ANFSKDFVPN----SVYFDENRF-FHIITGPNMSGKSTYIRQV 617 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 AL+ I++Q+GS++PAS A I +VD +++R+GS DNLA G STFMVEM+E A+ILN AT Sbjct: 618 ALLTILSQIGSFIPASSAQISVVDAVYTRIGSGDNLAKGLSTFMVEMLEVANILNNATKN 677 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S ++LDE+GRGT+T DG++IAWA EY+ + + + L +TH+HELT L L+ N L Sbjct: 678 SLIVLDEVGRGTSTYDGIAIAWAVSEYISKNIKAKTLFSTHYHELTQLESQLRGVKNFYL 737 Query: 791 QV-SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 + D N I FL+KV+ G D SYGI V +LAGLP +VI RA +IL E N+++ Sbjct: 738 SIKEDQNGEIRFLYKVMEGFVDKSYGIHVAQLAGLPKSVIERAKEILLDLENKKSENKEE 797 Query: 850 M--RLYYPEIQTKESKNNLSKNDKL--FVEKIKCLNLDEMSPLTALKTLYAVK 898 + +L + ++ E + KND+L F+E+I ++ +PL AL L +K Sbjct: 798 IYQQLLFSQLNQPEQEYKSDKNDQLLNFIEEI---DIATTTPLQALMILSELK 847 >gi|291618592|ref|YP_003521334.1| MutS [Pantoea ananatis LMG 20103] gi|291153622|gb|ADD78206.1| MutS [Pantoea ananatis LMG 20103] Length = 927 Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust. Identities = 311/892 (34%), Positives = 493/892 (55%), Gaps = 61/892 (6%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L + TPMM+QY+ +K+ +PD L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 82 DLSTHTPMMQQYLRLKAEHPDILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEP 141 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM GVP H +Y+ +L+++G +AICEQI P +K V R VVR+VTPGT++ Sbjct: 142 IPMAGVPHHAVENYLARLVQLGESVAICEQIGDPAL-----SKGPVERKVVRIVTPGTIS 196 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIF 199 ++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E+++ Sbjct: 197 DEALLQERQDNLLAAIVQGARGYGYATLDISSGRFRLSEPADQETMAAELQRTNPAELLY 256 Query: 200 SEKELSHA---EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 E + A + + L +P F+ + ++ + ++ FG + + Sbjct: 257 PEDFAAMALIDQRRGLRR--------RPLWEFEIDTARQQLNMQFGTRDLNGFGVEQAHL 308 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA + Y+K TQ + P I E Q ++ +D+A R NLEI + L+G E +L Sbjct: 309 GLRAAGCLLQYVKDTQRTSLPHIRSLSMERQQDSIIMDAATRRNLEITQNLAGGTENTLA 368 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D ++T G R+ + PL DS+ I R SI P L + +Q L+ D+ Sbjct: 369 AVLDKTVTPMGSRMLKRWLHMPLRDSSIIAKRQASIAEL--QP-LSDVLQPFLRQVGDLE 425 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R L+RL + P+D+A +R + + LN L N +L+ ++ + + L L Sbjct: 426 RILARLALRTARPRDLARMRHAFQQ-LPELNDLLANAESAQLKTLRAQMGEFSE-LRTLL 483 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + + P RDGG + G +A LDE R+L D + + L+++ E+ + +LK+ Sbjct: 484 EQAVVESPPVLIRDGGVIAPGYNAELDEWRALADGATDYLDRLEVREREKLGLDSLKVGF 543 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+I+V+ + + ++ RQT+ N R+ EL + E+++ + AL Sbjct: 544 NGVHGYYIQVSRGQSH------QVPIHYVRRQTLKNAERYIIPELKEYEDKVLTSKGKAL 597 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E +E L + ++ E+L ++ +A +D+ LA A NYCRP + + + Sbjct: 598 ALEKSLYEGLFDQLLPHLEALQLSAAALAELDVLSNLAERAWTLNYCRPTLHDKPGIKIT 657 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ LK+ PFIAN L+ ++ ++TGPNMGGKST++RQ ALI + Sbjct: 658 AGRHPVVEQVLKE----PFIANPLSLAPQR-----RMLIITGPNMGGKSTYMRQAALIAL 708 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MA +GS+VPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V++ Sbjct: 709 MAWIGSFVPAEEVVIGPLDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVLM 768 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + L+ N L + Sbjct: 769 DEIGRGTSTYDGLSLAWACAENLANRIKAMTLFATHYFELTTLPEKLEGVVNVHLDAVEH 828 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 + I F+H V G A SYG+ V LAG+P VI RA + LK E Sbjct: 829 GDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARNKLKELET-------------- 874 Query: 856 EIQTKESKNNLSKND-KLFVEK-------IKCLNLDEMSPLTALKTLYAVKA 899 + ++ + +N+ + L VE+ ++ L+ D ++P AL +Y +K+ Sbjct: 875 -VSSQSATSNIDGSQLPLLVEETSPAMEALEALDPDTLTPRQALDWIYRLKS 925 >gi|229588703|ref|YP_002870822.1| DNA mismatch repair protein MutS [Pseudomonas fluorescens SBW25] gi|259511173|sp|C3KCT2|MUTS_PSEFS RecName: Full=DNA mismatch repair protein mutS gi|229360569|emb|CAY47426.1| DNA mismatch repair protein [Pseudomonas fluorescens SBW25] Length = 863 Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust. Identities = 315/894 (35%), Positives = 487/894 (54%), Gaps = 56/894 (6%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L S TPMM+QY +K+ +PD L+FYRMGDFYE+F++DA A++ L ITLT RG+ G+ Sbjct: 7 DLSSHTPMMQQYWRLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQS 66 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCG+P H+ Y+ KL+K+G + ICEQI P +K V R VVR++TPGT++ Sbjct: 67 IPMCGIPYHSLEGYLVKLVKLGESVVICEQIGDPAT-----SKGPVERQVVRIITPGTVS 121 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIF 199 ++ LL N + AV + ++ +DI++G F + + L++++ RI+P E++ Sbjct: 122 DEALLDERRDNLIAAVLGDERLFGLSVLDITSGNFSVLEIKGWENLLAELERINPVELLI 181 Query: 200 SE---KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 + K+L + + G A + F+ + + +++ + FG + Sbjct: 182 PDDWPKDLPAEKRR------GTKRRAPWD--FERDSALKSLCQQFSVQDLKGFGCETLTL 233 Query: 257 KTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA + Y K+TQ P + E + T+ +D A+R NLE+ L+G R+ +L Sbjct: 234 AIGAAGCLLGYAKETQRTALPHLRSLRHERLDDTVVLDGASRRNLELDTNLAGGRDNTLQ 293 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D T G RL + PL D T + R SI + +Q LK D+ Sbjct: 294 SVVDRCQTAMGSRLLTRWLNRPLRDLTVLQARQTSITCLLDG-YRFEKLQPQLKEIGDIE 352 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEK 433 R L+R+ + P+D+A +RD + + + + D P ++L +L LEK Sbjct: 353 RILARIGLRNARPRDLARLRDALGALPQLQVAMTELDTPHLQQLAVTAGTYPELAALLEK 412 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + D+ P RDGG L+ G D+ LDE +SL + + + + L+ + T + NLK+ Sbjct: 413 AII----DNPPAIIRDGGVLKTGYDSELDELQSLSENAGQFLIDLEAREKARTGLANLKV 468 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GYFIE+ S A D + RQT+ RF T EL E++ +A + Sbjct: 469 GYNRVHGYFIELPSKQAESAPID------YQRRQTLKGAERFITPELKAFEDKALSAKSR 522 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL E +E L +I Q L + + +A +D+ LA A + P + Sbjct: 523 ALAREKMLYEALLEDLISQLAPLQDTAAALAELDVLSNLAERALNLDLNCPRFVSEPCMR 582 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + GRHP+VE+ L + PF+AND L + ++ ++TGPNMGGKST++RQ ALI Sbjct: 583 IVQGRHPVVEQVL----TTPFVANDLSLD-----DDTRMLVITGPNMGGKSTYMRQTALI 633 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 V++A +GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT +S V Sbjct: 634 VLLAHIGSFVPAASCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSLV 693 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DE+GRGT+T DGLS+AWA E L R L ATH+ ELT L +S N L + Sbjct: 694 LMDEVGRGTSTFDGLSLAWAAAERLAHL-RAYTLFATHYFELTVLPESEPLVTNVHLNAT 752 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--KLYHHNQKDMR 851 + NE I+FLH V+PG A SYG+ V +LAG+PN VI+RA + L E L H + Sbjct: 753 EHNERIVFLHHVLPGPASQSYGLAVAQLAGVPNDVITRAREHLSRLETTALPH----ETV 808 Query: 852 LYYPEIQTKESKNNLSKNDKLF-------VEKIKCLNLDEMSPLTALKTLYAVK 898 + P T SK +F ++++ L+LD ++P AL+ LYA++ Sbjct: 809 VASPTKAT--SKPAAPHQSDMFASLPHPVLDELAKLDLDGLTPRKALEMLYALQ 860 >gi|126667870|ref|ZP_01738836.1| DNA mismatch repair protein [Marinobacter sp. ELB17] gi|126627686|gb|EAZ98317.1| DNA mismatch repair protein [Marinobacter sp. ELB17] Length = 862 Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust. Identities = 306/885 (34%), Positives = 473/885 (53%), Gaps = 42/885 (4%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY++IK +P+ LVFYRMGDFYELF+DDA AS + ITLT RG+ G IPM G+P Sbjct: 1 MMQQYLKIKGQHPNELVFYRMGDFYELFYDDAKKASELMDITLTARGQSGGNPIPMAGIP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A YI +L++ G IAICEQI P +K V R VVR+VTPGTL++D L Sbjct: 61 YHAAEGYIARLVRAGQSIAICEQIGDPAT-----SKGPVDRQVVRIVTPGTLSDDAYLED 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEKELSH 206 N L+A+ + + + +DIS+G F +S N + L ++ R+ P EI+ SE Sbjct: 116 RRDNLLVAIYHHKQHFGFSSLDISSGRFAVSELNSPEALQGELQRLRPAEILISED---- 171 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAAAAAIS 265 + L E + P F+ + I + + FG + AA + Sbjct: 172 FPFTDLLEGFTGIRRQGP-WLFEPDTARRVITQQLQVRDLTGFGCEDMHLAVCAAGCLLQ 230 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y ++TQ P I RE + + +D+A+R NLEI L G + +L +D + T Sbjct: 231 YARETQRTALPHIRKLSRERREDAVILDAASRRNLEIDTNLMGGTQYTLAWVMDRTATAM 290 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 GGR + PL D + R +++ +++ PI LKS D+ R L+R+ + Sbjct: 291 GGRQLRRWLNRPLRDVAVVRQRQQAVSALLKD-FDYEPIHDQLKSIGDIERILARVALRS 349 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPT 445 P+D+A +RD ++ D + + + PQ L L + D+ P Sbjct: 350 ARPRDLARLRDAFAVLPDLQKALAAVD-STHIGELATTIGEYPQ-LADLLGRAIIDNPPV 407 Query: 446 FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEV 505 R+GG + DG DA LD+ R++ + + + + ++ + + T I LK+ +N GY+IE+ Sbjct: 408 VIREGGVIADGFDAELDDLRNISENAGQYLLDVETREKQRTGISTLKVGYNRVHGYYIEI 467 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEIL 565 + ++ D +I RQT+ N RF T EL + E++ +A + AL E ++ + Sbjct: 468 SRLQSAQAPAD------YIRRQTLKNAERFITPELKEFEDKALSAKSRALAREKALWDEV 521 Query: 566 SNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKT 625 + + L +A+Q +A +D+ A A C P + +++GRHP+VE+ Sbjct: 522 LETVAAELAPLQDAAQALAELDVLSNFAERASSLRLCAPQFSDEPGLQIEEGRHPVVEQL 581 Query: 626 LKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPA 685 L PF+ N+ + ++ ++TGPNMGGKST++RQ ALI ++A GS+VPA Sbjct: 582 L----DDPFVPNNLLIDAKR-----RMLVITGPNMGGKSTYMRQVALIALLAYTGSFVPA 632 Query: 686 SYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATL 745 A +G VD++F+R+GS+D++A GRSTFMVEM ETA+IL+ AT S V++DE+GRGT+T Sbjct: 633 DSAVLGPVDRIFTRMGSSDDIAGGRSTFMVEMTETANILHNATKHSLVLMDEVGRGTSTF 692 Query: 746 DGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKV 805 DGLS+AWAT E+L + C L ATH+ ELT L+ L+ N L ++ ++ I+FLH V Sbjct: 693 DGLSLAWATAEHLAQDILCYTLFATHYFELTQLADELEHAVNVHLTATEHDDSIVFLHNV 752 Query: 806 IPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL-YHHNQKDMRLYYPEIQTKES-- 862 G A SYG+QV KLAG+P VI A L E ++K P+ T+ + Sbjct: 753 HEGPASQSYGLQVAKLAGVPVEVIRNAKAQLANLEGANATPDEKRSTTGLPQKLTRRATA 812 Query: 863 -KNNLSKNDKLFVE--------KIKCLNLDEMSPLTALKTLYAVK 898 ++ + +F + L+LD+M+P AL+ LY +K Sbjct: 813 IADSTAFQGDMFARLEPSALELAVSALDLDDMTPRQALEQLYQLK 857 >gi|16803443|ref|NP_464928.1| DNA mismatch repair protein MutS [Listeria monocytogenes EGD-e] gi|224501654|ref|ZP_03669961.1| DNA mismatch repair protein [Listeria monocytogenes FSL R2-561] gi|284801789|ref|YP_003413654.1| DNA mismatch repair protein [Listeria monocytogenes 08-5578] gi|284994931|ref|YP_003416699.1| DNA mismatch repair protein [Listeria monocytogenes 08-5923] gi|38258203|sp|Q8Y789|MUTS_LISMO RecName: Full=DNA mismatch repair protein mutS gi|16410832|emb|CAC99481.1| DNA mismatch repair (recognition) [Listeria monocytogenes EGD-e] gi|284057351|gb|ADB68292.1| DNA mismatch repair protein [Listeria monocytogenes 08-5578] gi|284060398|gb|ADB71337.1| DNA mismatch repair protein [Listeria monocytogenes 08-5923] Length = 860 Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust. Identities = 312/891 (35%), Positives = 496/891 (55%), Gaps = 55/891 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+EIK D+ +F+R+GDFYE+FF+DAL AS+ L ITLT R + IPMCG Sbjct: 5 TPMIKQYLEIKDKYQDAFLFFRLGDFYEMFFEDALNASQILEITLTGREGGTKEKIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A+ YI LI+ G+++AICEQ+E P + K +V+R VV+L++PGT+ +++ L Sbjct: 65 VPYHSASGYIDTLIEKGYKVAICEQVEDP-----KTTKGMVKREVVQLISPGTVMDERGL 119 Query: 146 SPTDSNYLMAVARIR-TEWAIAWIDISTGIFK--ISTSNHDRLISDIMRIDPREIIFSEK 202 ++NY+ ++ E+ A+ D+STG K + ++ DRLI+++ + RE+I S Sbjct: 120 KAKENNYIASLYCYEGKEYGFAYSDLSTGELKSTVIEASEDRLINELTTLSTRELIVSSS 179 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 E E L +V Q + F S+ E N V S S EK A Sbjct: 180 EK---------EVLSDVMKEQLGLTF--SVHEEDTIPAENEKLVTRHMSLS--EKRAIGK 226 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDYS 321 + Y+K+TQ + + + + + +D ++ NLE+ ++ G R+ +LL +D + Sbjct: 227 LLHYLKETQKRDLGHLQQAVHYETSNYMKMDYYSKRNLELAESIRGKGRQGTLLWLLDNT 286 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSI-----NFFIQNPILINPIQKILKSSPDVPR 376 T GGR+ + I PL D KI R + + +FF + ++ N LK+ D+ R Sbjct: 287 QTAMGGRMLKQWIDRPLIDRKKIIERQNDVSELMAHFFERLELVEN-----LKNVYDLER 341 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 R+ G +D+ +R+ + I L E L E+L + EK L Sbjct: 342 LAGRVAYGNVNARDLIQLRNSLYQIPRIRATLLSMS-SESLTELAEQLDPCEELTEK-LE 399 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + D P R+GG ++DG ++ LD R K IA L+ K E T IK LK+ N Sbjct: 400 EAIMDSAPISIREGGIIKDGYNSQLDTYRDASRNGKTWIAELERKERELTGIKTLKVGFN 459 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+IEVT ++ +L + R+ +QT++N R+ T EL + E I +A ++ Sbjct: 460 RVFGYYIEVTRANTHLL-----PEGRYERKQTLTNAERYITPELKEKEKLILDAEEKSME 514 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E + F + + + E L ++ ++ ID + A ++++ ++ RP + + VK Sbjct: 515 LEYQLFSEVREMVKDYIERLQKLAKSVSEIDCLQSFADISEKNHFIRPTLSEDGSLHVKQ 574 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VEK + QS ++ANDCDL D+N ++ L+TGPNM GKST++RQ AL I Sbjct: 575 GRHPVVEKVMGAQS---YVANDCDL----DENR-EILLITGPNMSGKSTYMRQVALTAIC 626 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+G +VPA A + I D++F+R+G+AD+L +G+STFMVEM+E + + AT S ++ D Sbjct: 627 AQVGCFVPAEEAILPIFDQIFTRIGAADDLIAGQSTFMVEMLEARNAIVHATKDSLILFD 686 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGTAT DG+++A A IEY+HE + L +TH+HELTDL K L+ N + + N Sbjct: 687 EIGRGTATYDGMALAQAIIEYIHENVHAKTLFSTHYHELTDLEKELRGLQNIHVSAVEEN 746 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE----KLYHHNQKDMRL 852 ++FLHK+ G AD SYGI V +LA LP ++I RA IL+ E K+ + K Sbjct: 747 GKVVFLHKIKEGPADKSYGIHVAELAELPKSLIERASRILEQLENDDKKIIIASVKQPEE 806 Query: 853 YYPEIQTK----ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + E+Q E + S + +++I +N+ +M+P+ A+ LY +++ Sbjct: 807 VHEEVQLSMFPLEPEKKASSKETKLLKEIASMNIMQMTPMDAMNKLYELQS 857 >gi|221133350|ref|ZP_03559655.1| DNA mismatch repair protein(MutS) [Glaciecola sp. HTCC2999] Length = 874 Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust. Identities = 306/887 (34%), Positives = 488/887 (55%), Gaps = 42/887 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ IK+ +P+ L+FYRMGDFYELFFDDA A++ + ITLT RGK G+ IPM G Sbjct: 15 TPMMQQYLRIKAQHPNELLFYRMGDFYELFFDDAKRAAQLIDITLTARGKAGGEPIPMAG 74 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H Y+ KL+++G +AICEQ+ P+ +K V R V +++TPGT+T++ LL Sbjct: 75 VPYHAVEGYLAKLVQMGESVAICEQVGDPVTSK-----GPVAREVKQVLTPGTVTDEALL 129 Query: 146 SPTDSNYLMAV-------ARIRTEWAIAWIDISTGIFKISTS-NHDRLISDIMRIDPREI 197 ++A+ + + + +A + +STG F I+ + + L++D+ R +P E+ Sbjct: 130 QDAQDTLIVAITSQSSSKSAGQIHYGLAALALSTGQFLITQPLSEEALLADLQRFNPAEL 189 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVE 256 ++ E ++ + T +V +P FD + + + + + FG + + + Sbjct: 190 LYDETLIA----PQVLATYPK-SVRRPQWEFDTDTAVNHLNMQFGTKELTGFGVADATLA 244 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 AA + Y+K TQ + P I + T+ +D A R NLE+ LSG E ++ Sbjct: 245 LGAAGCLLQYVKDTQKRSLPHIKRISLQAQSDTVQMDFATRKNLELTHNLSGGIENTVFD 304 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 ++ + T G RL + I P+T + R + I+ +++ + P Q ILK DV R Sbjct: 305 VLNNTQTPMGARLLQQWIHRPITQQNLLEQRYNVIDSLVEHDV-AAPAQ-ILKKMGDVQR 362 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 L+RL + P+D A +RD + + N+ ++D P+ L+ + P+S + L+ Sbjct: 363 ILARLALRSARPRDFARLRDTLNLLPELQNILAEHDEPK-LQALANTISTFPESAD-LLT 420 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + D+ P RDGG + G + LDE R+L + + L+ + + T I LK+ +N Sbjct: 421 RAIIDNPPVVIRDGGVIAPGYNVQLDELRALSQGATDFLTVLEEREKDATGINTLKVGYN 480 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 G+FIEV+ A ++ +I RQT+ N R+ EL E ++ N+ + AL Sbjct: 481 RVHGFFIEVSKGQAHLVP------GHYIRRQTLKNNERYIIEELKAHEEKVLNSQSQALA 534 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E + +E L + ++ ++L ++ +A +D+ I A + N RP + ++ +D Sbjct: 535 LEKQCYEALFDELLPHLDALTLSANALAELDVLICFASQSVALNLYRPELTSTPGIEYQD 594 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRH +VE KQ PFIAN L K+ ++TGPNMGGKST++RQ ALIV++ Sbjct: 595 GRHIVVEHVTKQ----PFIANPLQLDAHQ-----KMLMITGPNMGGKSTYMRQTALIVLL 645 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A +G YVPA IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ A+ S V++D Sbjct: 646 AYIGCYVPAQRCQIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILHNASEHSLVLMD 705 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DGLS+AWA EY++ T L ATH+ ELT L+++ + N L + N Sbjct: 706 EIGRGTSTYDGLSLAWACAEYINNTINAFTLFATHYFELTQLAENTEGMCNVHLNAIEHN 765 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK---LYHHNQKDMRLY 853 + I F+H V G A SYG+QV +LAG+P VI A L T E N+ D Sbjct: 766 DTIKFMHNVQQGAASKSYGLQVAQLAGVPEHVIQVAKQKLTTLETQSIAVDSNKTDSATE 825 Query: 854 YPEIQTKESKN-NLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 E L + + ++ + ++ DE+SP AL +Y +K+ Sbjct: 826 TNAASLVEPVQLALDNSHQALIDTLDQISADELSPKQALDFIYVLKS 872 >gi|289432904|ref|YP_003462777.1| DNA mismatch repair protein MutS [Dehalococcoides sp. GT] gi|288946624|gb|ADC74321.1| DNA mismatch repair protein MutS [Dehalococcoides sp. GT] Length = 858 Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust. Identities = 311/884 (35%), Positives = 507/884 (57%), Gaps = 41/884 (4%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 ++++TP+ +QY++IK P+++VF+R+GDFYE F +DA +A+R L I LT R G + Sbjct: 1 MENTTPLRKQYLDIKKNYPEAIVFFRLGDFYETFEEDARIAARELEIVLTSREMGKGLKV 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 P+ G+P H ++Y+ +LI G+++AICEQ+ P E K LV+R V RLVTPGT+ E Sbjct: 61 PLAGIPYHALDNYLSRLINKGYKVAICEQVTKPGE-----TKGLVQRQVTRLVTPGTVVE 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 LL +N+L+++ +A+ DIST F + +N L ++I R+ P EII Sbjct: 116 PNLLQTKQNNFLLSLYLTEDSCGLAFADISTSEFGCTQTNISELEAEISRLSPAEII--- 172 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ-VEKTAA 260 L + +L L +F+ I+ R+ ++ + +G + + +AA Sbjct: 173 --LPKNQSLNLPIHLKATISKLDGYYFEADIARERLLRHFECQNLSAYGCENMPLAISAA 230 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTLSG-SREQSLLK 316 A ++Y+++TQ K ++ ER + +T + +DS SNLEI R+ G S + SLL Sbjct: 231 GALLNYLEETQ---KSSLKQLERLSVYTTADYMQMDSHTLSNLEIFRSSGGNSLKGSLLG 287 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D + T GGRL + + PL + I RL ++++F + + + K L D+ R Sbjct: 288 ILDQTKTAMGGRLLRKFLGQPLLKQSDIEKRLSAVDYFFEESLARTSLAKSLGQIADMER 347 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 +R++ P+++ +++ + + ++ ++ P L + LK LP+ L+ ++ Sbjct: 348 MANRIRQKTILPRELISLKNSLET-VSAIHRQFGLMPPPRLAYFLNGLKPLPEMLD-IIN 405 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 ++DD P+ DG +R G D +D+ SL ++ ++ ++ + E T IK+LK+ +N Sbjct: 406 KTITDDPPSTLGDGKVIRAGFDPEMDKLCSLAGDARTFLSQMETRERERTGIKSLKLGYN 465 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+IE+++++ + + FI +QT+ N RF T +L + EN I NA L Sbjct: 466 RVFGYYIEISNANLGDVPPE------FIRKQTLVNAERFITPKLKEYENLILNAKERLLE 519 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E +E + N + +L + +A +D+ A A +A +Y RP+ ++ Sbjct: 520 METGLYEQVLNQLGGFYSALLANAAALAALDVLSAFAEVAVRNSYVRPVFHPENRLDIRK 579 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE+ L S F+AND LS + ++ +LTGPNM GKST+L+Q ALIV+M Sbjct: 580 GRHPMVEQGLGYGS---FVANDISLSAED----CQIIILTGPNMAGKSTYLKQTALIVLM 632 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+GSYVPA A + + D++F+R+G+ ++L++G+STFMVEM+ETASILN AT++S +ILD Sbjct: 633 AQIGSYVPAETAELCLTDRIFTRIGAREDLSAGQSTFMVEMVETASILNTATSRSLLILD 692 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 EIGRGT+T DGL+IA A +EY+H + L ATH+HEL +L+ L R N + VS+ Sbjct: 693 EIGRGTSTYDGLAIAQAVVEYIHSQPSLTAKTLFATHYHELVELASYLPRVKNYNIAVSE 752 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 ++FLHK++PG D SYGI V KLAGLP VI RAY++L E K R Sbjct: 753 DRGEVVFLHKIVPGGVDKSYGIHVAKLAGLPKWVIKRAYEVLTELENPAKKQPKS-RTCQ 811 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P++Q ++ + E+IK L ++ ++PL AL LY +K Sbjct: 812 PQLQLP-----MTGQTSVLEEEIKELEIESLTPLAALNKLYELK 850 >gi|147669669|ref|YP_001214487.1| DNA mismatch repair protein [Dehalococcoides sp. BAV1] gi|189030713|sp|A5FQC0|MUTS_DEHSB RecName: Full=DNA mismatch repair protein mutS gi|146270617|gb|ABQ17609.1| DNA mismatch repair protein MutS [Dehalococcoides sp. BAV1] Length = 858 Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust. Identities = 311/884 (35%), Positives = 506/884 (57%), Gaps = 41/884 (4%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 ++++TP+ +QY++IK P+++VF+R+GDFYE F +DA +A+R L I LT R G + Sbjct: 1 MENTTPLRKQYLDIKKNYPEAIVFFRLGDFYETFEEDARIAARELEIVLTSREMGKGLKV 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 P+ G+P H ++Y+ +LI G+++AICEQ+ P E K LV+R V RLVTPGT+ E Sbjct: 61 PLAGIPYHALDNYLSRLINKGYKVAICEQVTKPGE-----TKGLVQRQVTRLVTPGTVVE 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 LL +N+L+++ +A+ DIST F + +N L ++I R+ P EII Sbjct: 116 PNLLQTKQNNFLLSLYLTEDSCGLAFADISTSEFGCTQTNIGELEAEISRLSPAEII--- 172 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ-VEKTAA 260 L + +L L +F+ I+ + ++ + +G + + +AA Sbjct: 173 --LPKNQSLNLPIHLKATISKLDGYYFEADIAREHLLRHFECQNLSAYGCENMPLAISAA 230 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTLSG-SREQSLLK 316 A ++Y+++TQ K ++ ER + +T + +DS SNLEI R+ G S + SLL Sbjct: 231 GALLNYLEETQ---KSSLKQLERLSVYTTADYMQMDSHTLSNLEIFRSSGGNSLKGSLLG 287 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D + T GGRL + + PL + I RL ++++F + + + K L D+ R Sbjct: 288 ILDQTRTAMGGRLLRKFLGQPLLKQSDIEKRLSAVDYFFEESLARTSLAKSLGQIADMER 347 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 +R++ P+++ +++ + + ++ ++ P L + LK LP+ L+ ++ Sbjct: 348 MANRIRQKTILPRELISLKNSLET-VSAIHRQFGLMPPPRLAYFLNGLKPLPEMLD-IIN 405 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 ++DD P+ DG +R G D +D+ SL ++ ++ ++ + E T IK+LK+ +N Sbjct: 406 KTITDDPPSTLGDGKVIRAGFDPEMDKLCSLAGDARTFLSQMETRERERTGIKSLKLGYN 465 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+IE+++++ + + FI +QT+ N RF T EL + EN I NA L Sbjct: 466 RVFGYYIEISNANLGDMPPE------FIRKQTLVNAERFITPELKEYENLILNAKERLLE 519 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E +E + N + +L + +A +D+ A A +A +Y RP+ ++ Sbjct: 520 METGLYEQVLNQLGGFYSALLANAAALAALDVLSAFAEVAVRNSYVRPVFHPENRLDIRK 579 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE+ L S F+AND LS + ++ +LTGPNM GKST+L+Q ALIV+M Sbjct: 580 GRHPMVEQGLGYGS---FVANDISLSAED----CQIIILTGPNMAGKSTYLKQTALIVLM 632 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+GSYVPA A + + D++F+R+G+ ++L++G+STFMVEM+ETASILN AT++S +ILD Sbjct: 633 AQIGSYVPAETAELCLTDRIFTRIGAREDLSAGQSTFMVEMVETASILNTATSRSLLILD 692 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 EIGRGT+T DGL+IA A +EY+H + L ATH+HEL +L+ L R N + VS+ Sbjct: 693 EIGRGTSTYDGLAIAQAVVEYIHSQPSLTAKTLFATHYHELVELASYLPRVKNYNIAVSE 752 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 ++FLHK++PG D SYGI V KLAGLP VI RAY++L E K R Sbjct: 753 DRGEVVFLHKIVPGGVDKSYGIHVAKLAGLPKWVIKRAYEVLTELENPAKKQPKS-RTCQ 811 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P++Q ++ + E+IK L ++ ++PL AL LY +K Sbjct: 812 PQLQLP-----MTGQTSVLEEEIKELEIESLTPLAALNKLYELK 850 >gi|212711362|ref|ZP_03319490.1| hypothetical protein PROVALCAL_02434 [Providencia alcalifaciens DSM 30120] gi|212686091|gb|EEB45619.1| hypothetical protein PROVALCAL_02434 [Providencia alcalifaciens DSM 30120] Length = 855 Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust. Identities = 303/825 (36%), Positives = 462/825 (56%), Gaps = 36/825 (4%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 ++ +S TPMM+QY+++K+ +PD L+FYRMGDFYELFFDDA AS+ L I+LTKRG+ G+ Sbjct: 5 QSFESHTPMMQQYLKLKAQHPDILLFYRMGDFYELFFDDAKKASQLLDISLTKRGQSAGQ 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H A +Y+ +L+++G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGVPHHAAENYLARLVQMGESVAICEQIGDPATSK-----GPVERQVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREII 198 T++ LL+ N L AV + + A +DI++G F IS + D L +++ R P E++ Sbjct: 120 TDEALLNERQDNLLAAVWQESQGYGFATLDIASGRFIISEIDDDESLKAELQRTRPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 + E S SL E L +P ++ ++ ++ + + FG + Sbjct: 180 YPEDFAS----MSLIE-LNKGLRRRPIWEYELDTAKQQLNLQFGTKDLVGFGVENAHKAL 234 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA + Y+K TQ P I E Q + +D+A R NLE+ + L+G E +L Sbjct: 235 RAAGCLLQYVKDTQRTALPHIRSIIMEKQQDNVILDAATRRNLELTQNLAGGTENTLAAI 294 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D +T G R+ + +PL + T + R +I Q I + P L+ D+ R Sbjct: 295 LDKCVTPMGSRMLKRWLHTPLRNLTVLTNRQQAIGALQQYGIELQPF---LRQIGDLERV 351 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKTL 435 L+RL + P+D+ +R + +I + ++D L V + +L LEK + Sbjct: 352 LARLALRSARPRDLTRMRHAFQQYQDIHQILAQSDCGYLNTLTQRVGRFDELQDLLEKAI 411 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 D P RDGG + G ++ LDE R+L D + + L+++ E+ I LK+ + Sbjct: 412 V----DAPPVLVRDGGVIATGYNSELDEWRALADGATDYLDRLEIREREKLGIDTLKVGY 467 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+I+V+ + + + ++ RQT+ N R+ EL + E+++ + AL Sbjct: 468 NAVHGYYIQVSRGQSHL------TPIHYVRRQTLKNAERYIIPELKEYEDKVLTSKGKAL 521 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 IE ++ L + ++ +L +++ +A +D+ LA A Y P + + + Sbjct: 522 AIEKALYDELFDRLLPHLAALQTSAEALAELDVLSTLAERADTLGYACPQLTDKPGIQIT 581 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 +GRHP+VE+ L S+PFI+N LS +L ++TGPNMGGKST++RQ ALI + Sbjct: 582 EGRHPVVEQVL----SEPFISNPLSLSPQR-----RLLIITGPNMGGKSTYMRQTALITL 632 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +A +GS+VPAS A IG VD++F+RVG++D+LASGRSTFMVEM ETA+IL+ AT S V++ Sbjct: 633 LAYIGSFVPASKAVIGPVDRIFTRVGASDDLASGRSTFMVEMTETANILHNATEHSLVLM 692 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + L+ N L + Sbjct: 693 DEIGRGTSTYDGLSLAWACAENLVNRIKAMTLFATHYFELTTLPEKLEGAVNIHLDAMEH 752 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + I F+H V G A SYG+ V LAG+P VI RA LK E Sbjct: 753 GDTIAFMHNVQDGAASKSYGLAVASLAGVPKEVIKRAKQKLKELE 797 >gi|294102017|ref|YP_003553875.1| DNA mismatch repair protein MutS [Aminobacterium colombiense DSM 12261] gi|293616997|gb|ADE57151.1| DNA mismatch repair protein MutS [Aminobacterium colombiense DSM 12261] Length = 858 Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust. Identities = 299/881 (33%), Positives = 491/881 (55%), Gaps = 55/881 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM+ QY+E K PD L+F+RMGDFYE+FF+DA AS L I LT R K IPM G Sbjct: 10 TPMLSQYVEWKKKYPDCLLFFRMGDFYEMFFEDAQKASEILDIALTSRDP--SKSIPMAG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H ++Y+ KL+K G+++AICEQ+ P KSLV R V+R+VTPGT ++ Sbjct: 68 VPFHAVDNYLGKLVKAGYKVAICEQVSVP------DGKSLVDRRVIRIVTPGTYVPEE-- 119 Query: 146 SPTDSNYLMAVARIRTE-WAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE--- 201 + L ++ + + A+A + ++TG + + +S I +P E++ + Sbjct: 120 -AGEEGRLASINLLNDDTIALAMLSVNTGCLEAGVLKKEEALSLITGFNPGEVLIPDTIK 178 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 +E E ++ F + + F + + +N+ + FG T A Sbjct: 179 REDLPVELQNFF------ILQRTKEQFTPDGAARWLCKIFNVPALSVFGLEEGAFDTGCA 232 Query: 262 AAI-SYIKKTQM--VNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 A+ Y+++TQ + T YP RE + L +D A++ NLE++ SG +L + Sbjct: 233 GAVLHYLEETQFGAIQHVTRIYPLRE--KHFLHLDVASQQNLELV---SGDG-PTLYSVL 286 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 + G RL E I PL D IN R + + F +Q+P++ +Q +L D+ R+ Sbjct: 287 NKCKNPMGRRLLREWILRPLLDQDAINKRQNGVEFLVQDPVVRQKLQNLLGECRDIERAS 346 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 SRL +G G P+D+A IRD + I ++ + K+ E+ + L ++L L+S Sbjct: 347 SRLSLGTGNPRDLAAIRDTLLL-IPLVYGYCKSSPLEKFISSDNSL----ETLSTLLASA 401 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 L D++P +G +R G ++ LD R LR+ + + K +T I LK+ N Sbjct: 402 LCDEVPRHLHNGDVIRTGFNSELDSWRELREHGDQWLDQYLEKEKAKTDIPKLKVGSNKI 461 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY++E++ + + ++ +I +QT+ + RF T EL + E ++ + +E Sbjct: 462 FGYYLEISKGNLDKVPEN------YIRKQTLVSAERFITPELKEFEEKMAASEQEIASLE 515 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + + L +E + + + + +++ ID+ +LA +A E+NY RP I+N N ++ GR Sbjct: 516 SKIYADLVQHTLEHVQKIQDGAAMLSCIDVLASLAQVAWERNYIRPQINNGLNLKIEGGR 575 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP++E T PF+ ND L D + ++ L+TGPNM GKST+LR AL+VIMAQ Sbjct: 576 HPVIEATFLDL---PFVPNDIVL----DGDEERIALITGPNMAGKSTYLRMAALLVIMAQ 628 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 MG+++PA+ A +G++D++F+R+G+ D L+ G STFMVEMIETA+IL+ T++S V+LDEI Sbjct: 629 MGAFIPAAEASMGLMDRVFTRIGARDELSRGNSTFMVEMIETANILHNVTDRSIVVLDEI 688 Query: 739 GRGTATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 GRGT+T DG+SIAWA +EYL ++ + L ATH+HEL L L N ++ V + Sbjct: 689 GRGTSTYDGMSIAWAVLEYLDHGCGSKPKVLFATHYHELVALEDHLNGLKNLSMAVHEGE 748 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 GI FL+KV+ G AD SYGI+V +LAG+P V+ RA+ +L+TFE+ +++ Sbjct: 749 RGISFLYKVVDGPADRSYGIEVARLAGIPPAVLKRAFHLLETFER-----ADEVKPSGGV 803 Query: 857 IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAV 897 ++T + + + +E++ ++ ++M+P AL+ +Y + Sbjct: 804 METSQQIQLFPVSSQAIIEELAAIDPNKMTPFRALEMMYKI 844 >gi|224476432|ref|YP_002634038.1| DNA mismatch repair protein MutS [Staphylococcus carnosus subsp. carnosus TM300] gi|254766637|sp|B9DPB9|MUTS_STACT RecName: Full=DNA mismatch repair protein mutS gi|222421039|emb|CAL27853.1| putative DNA mismatch repair protein MutS [Staphylococcus carnosus subsp. carnosus TM300] Length = 869 Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust. Identities = 325/904 (35%), Positives = 483/904 (53%), Gaps = 82/904 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY++IKS D L+F+R+GDFYE+FF+DA ASR L ITLTKR IPMCG Sbjct: 5 TPMMQQYLKIKSQYQDCLLFFRLGDFYEMFFEDAKEASRVLEITLTKRDAKKENPIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI+ LI G+++AICEQ+E P + K +V+R V+R+VTPGT+ + Sbjct: 65 VPYHSAESYIETLINEGYKVAICEQMEDP-----KTTKGMVKREVIRVVTPGTIMNQGGM 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREIIFSEKEL 204 +NY+++ + A+++ D+STG K++ N + L+++I I+P EI+ +++ Sbjct: 120 DEKQNNYILSFIKDGATIAVSYCDVSTGELKVTKFNDESMLLNEITTINPNEIVAADQ-- 177 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS----FSQVEKTAA 260 S+ + IT VD + +QVE T Sbjct: 178 -----------------------VSESLKQQMSLATETITVVDEISNEAYEVNQVEDTLM 214 Query: 261 AAAIS----YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQSLL 315 A+ YI TQ N I + + + +D A+ NLE+ ++ S++ +LL Sbjct: 215 HQAVQLLLDYIHHTQKRNMNHIEDAQVYEAIDYMKMDYYAKRNLELTESIRLKSKKGTLL 274 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T G R + I PL IN RLD+++ I I + ++ L D+ Sbjct: 275 WLMDETKTPMGARRLKQWIDRPLIYKQAINERLDAVSQLIDRFIERDTLRNYLNQVYDIE 334 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEK 433 R + R+ G +D+ ++ I NI L + LPE+ R +E L L LEK Sbjct: 335 RLVGRVSYGNVNARDLIQLKHSIAEIPNIKALLDDFDDALPEQFR-QLEPLNDLLDLLEK 393 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 +L ++ P +DGG + G + LDE K+ +A LQ K E T IK+LKI Sbjct: 394 SLV----EEPPISVKDGGLFKQGFNQQLDEYLEASVNGKQWLAQLQAKERERTGIKSLKI 449 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKD-RFIHRQTMSNLTRFTTLELIDLENRITNATN 552 N GYFIE+T ++ K E D + +QT+SN RF T EL + E+ I A + Sbjct: 450 SFNKVFGYFIEITRANL----KGFEPADFGYNRKQTLSNAERFITDELKEKEDIILGAED 505 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 A+ +E + F L + +E L +++I+ ID + A +A++ NY RP + Sbjct: 506 KAVELEYQLFAQLREEVKAYTERLQKQAKLISEIDCLQSFAEIAQKYNYVRPEFSDDKTL 565 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 + D RHP+VE+ + ++ NDC L + ++L+TGPNM GKST++RQ A+ Sbjct: 566 DLVDSRHPVVERVM---DYNDYVPNDCRLD-----DDQFIYLITGPNMSGKSTYMRQVAI 617 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 I IMAQMG+YVP A + I D++F+R+G+AD+L SG+STFMVEM+E L AT S Sbjct: 618 ISIMAQMGAYVPCGSAVLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTYATEDSL 677 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 +I DEIGRGT+T DGL++A A IEY+ ET+ + L +TH+HELT L +SL+ N + Sbjct: 678 IIFDEIGRGTSTFDGLALAQAMIEYVAETSHAKTLFSTHYHELTTLDQSLECLKNVHVAA 737 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE-------KLYHH 845 ++ +IFLHKV G D SYGIQV KLA LP+ VI RA IL FE ++ H Sbjct: 738 NEYQGELIFLHKVKDGAVDDSYGIQVAKLADLPDRVIERAQVILDAFEEKDKPQPQISHL 797 Query: 846 NQKDMRLYYPEIQTKESKNNLSKND------KLF----VE-----KIKCLNLDEMSPLTA 890 Q + + PEI+ + K LF VE ++K +N+ M+PL A Sbjct: 798 QQTESFVREPEIEDIQDKKEPETEQFQQGAFDLFETPPVESEIEAELKKINISNMTPLQA 857 Query: 891 LKTL 894 L L Sbjct: 858 LNKL 861 >gi|169350633|ref|ZP_02867571.1| hypothetical protein CLOSPI_01405 [Clostridium spiroforme DSM 1552] gi|169292687|gb|EDS74820.1| hypothetical protein CLOSPI_01405 [Clostridium spiroforme DSM 1552] Length = 837 Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust. Identities = 305/879 (34%), Positives = 491/879 (55%), Gaps = 59/879 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM QY+ IK N DS+V +R+GDFYE+FFDDA+L S+ L I LT + + + +PMCG Sbjct: 6 SPMMMQYLSIKEENQDSIVMFRLGDFYEMFFDDAILVSKELEIALTGKNAGVAQRVPMCG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YIQ+L+ GH++AI EQ+ P G K +V R VV+++TPGT+ D+ L Sbjct: 66 VPFHSAATYIQRLVDNGHKVAIVEQLSEP------GKKGIVERGVVQIITPGTIF-DESL 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 + +NY+ A+ + +A+ DISTG F + + ID +E + L+ Sbjct: 119 TNNRNNYIAAIEEFDFNYTLAFCDISTGEFSV------------VNIDKKEKLL----LN 162 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQV-EKTAAAAAI 264 + ++ E V + + + F +S D YN F + S + ++ ++ + Sbjct: 163 QLQMMAVKEI---VCLPEQSFEFKDILSSPFPNDKYNDKYDKIFSNISDLKQRKTSSLLL 219 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSIT 323 +Y+ TQ + E D L +D R LE+ + S + SL +D + T Sbjct: 220 NYLLDTQKRELEHLQKIEEIDNNEYLTMDIYTRKALELTANSKSNEKYGSLYWLLDQTKT 279 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL + I PL KI RLD + F N I I++ILK D+ R SR+ Sbjct: 280 AMGSRLLKQWIERPLISQDKIEKRLDIVEIFTNNFIQRESIKEILKDIYDLERLSSRIAF 339 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKTLSSMLSD 441 G +D+ I + ++ + L + P +EL + L + + ++K + D Sbjct: 340 GNINARDLKWISNSLKVIPELKGQLLSINEPLLDELANRLVDLNHICELVDKAII----D 395 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + P +DGG ++DG + LDE R +RD K+ +A+ + K E+T IK LKI +N GY Sbjct: 396 NPPLTVKDGGIIKDGFNEELDELRYIRDHGKQWLANFEQKEREKTGIKGLKIGYNRVFGY 455 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IEVT ++ S++K + + +Q+++N RF T EL ++E+++ +A + + +E Sbjct: 456 YIEVTKANLSLVKDEF----NYTRKQSLANAERFVTPELKEMESKLLSAQDKMIKLEYVL 511 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 F + + I L + ++++A++D+ ++A+L+ E +Y RP+ + + DGRH I Sbjct: 512 FTQIRDYIKNDVHVLQDVAKIVAMVDVYQSMAVLSSENSYVRPVFNQEKTLKIVDGRHGI 571 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 +EK + Q++ +++ND D+ DK S L L+TGPNMGGKST++RQ ALI +M Q+G Sbjct: 572 IEKVMSQRT---YVSNDIDI----DKESPVL-LITGPNMGGKSTYMRQIALIALMGQIGC 623 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VP S A+I I D++F+R+G++D+L SG+STFMVEM+E + L AT S +I DEIGRG Sbjct: 624 FVPCSMANIPIFDQIFTRIGASDDLISGQSTFMVEMLEANNALRYATENSLIIFDEIGRG 683 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 TAT DG++IA + IEY+ + +C L +TH+HELT L + N S N+ ++F Sbjct: 684 TATFDGMAIAQSMIEYIATSIKCITLFSTHYHELTFLEEKNLGIKNVHASASIENDNLVF 743 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK--LYHHNQKDMRLYYPEIQT 859 L+++ PG ++ SYGI V KLA LP+ +++RA +LK+ E+ + HH D P + Sbjct: 744 LYRIKPGRSNKSYGINVAKLAKLPDAILNRANTLLKSLEENNIEHHLSSDKVKEAPIVTR 803 Query: 860 KESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E + L K ++L +SPL AL TL +K Sbjct: 804 SEVEKYLDK-----------IDLMTLSPLDALSTLIELK 831 >gi|15614932|ref|NP_243235.1| DNA mismatch repair protein MutS [Bacillus halodurans C-125] gi|20139216|sp|Q9KAC0|MUTS_BACHD RecName: Full=DNA mismatch repair protein mutS gi|10174989|dbj|BAB06088.1| DNA mismatch repair protein (mismatch recognition step) [Bacillus halodurans C-125] Length = 865 Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust. Identities = 313/896 (34%), Positives = 498/896 (55%), Gaps = 68/896 (7%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD-IPM 83 TPMM+QY+EIK+ D+ +F+R+GDFYELF DDA+ A++ L ITLT RGK G++ IPM Sbjct: 4 QTPMMKQYLEIKAQYKDAFLFFRLGDFYELFLDDAVKAAQELEITLTGRGK--GEERIPM 61 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVP H+A+HYI +L++ G++IAICEQ+E P AK +V+R V++L+TPGT+ + + Sbjct: 62 CGVPYHSADHYISRLLEKGYKIAICEQVEDPKNAK-----GVVKREVIKLITPGTIMDGK 116 Query: 144 LLSPTDSNYLMAVARIRTE-WAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSE 201 L+ ++N+L AV R + + IA D++TG ++S S D L ++ +E++ S Sbjct: 117 LIVEKENNFLCAVTRFEDQSYGIARADLTTGESRVSLVSEQDDLFHELASSSIKEVVLSP 176 Query: 202 ---KELSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 +E +H +SL TL P + ES + + FG Q Sbjct: 177 GWTEEDAHRLRQSLSVTLSEEEAEDLPKGY------ESLCENVEQPKLLRAFGRLLQ--- 227 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLK 316 Y+ +TQ + + + + + ID +R NLE++ TL +++ SLL Sbjct: 228 --------YLLRTQKRSLEHLQPVQYDPPNEVMKIDLHSRRNLELVETLREKKKKGSLLW 279 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D ++T GGRL + + PL +I R + F+ + ++ L+ D+ R Sbjct: 280 AVDETVTAMGGRLLKQWVERPLLSKKEIERRQGLVQSFLDHYFEREELRDELRHVYDLER 339 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLK---NDLPEELRGAVEKLKKLPQSLEK 433 + ++ G +++ +R ++ I L K D+ E L+ +++ + L LE Sbjct: 340 LVGKVAYGNVNARELVQLRKSLQRIPAIFALVEKIGNQDVNERLQ-TIDRCESLVDLLEH 398 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 +L DD P ++GG +RDG LD R K IA L+ K E T IK+LKI Sbjct: 399 SLV----DDPPVSIKEGGMIRDGFHKELDTYRDASRNGKSWIAELEQKEREATGIKSLKI 454 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GY+IEVT ++ +L++ R+ +QT++N R+ T EL + E I NA S Sbjct: 455 GYNKVFGYYIEVTKANIHLLEEG-----RYERKQTLTNAERYVTPELKEKEALILNAEES 509 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + +E + F + + + L +Q+I+ +D+ A +++ +Y RP + Sbjct: 510 IVQLEYDLFLQVREQVKDYIRPLQALAQMISELDVIQGFATVSETHHYVRPALQEDRAIA 569 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +K GRHP+VE+ + + ++AND D+ K+ + L+TGPNM GKST++RQ ALI Sbjct: 570 IKGGRHPVVERVI---PNGEYVANDVDM-----KDGRSILLITGPNMAGKSTYMRQLALI 621 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 IM Q+G +VPA A + I D++F+R+G+AD+LASG+STFMVEM+ET L +AT S + Sbjct: 622 AIMGQIGCFVPADEARLPIFDQVFTRIGAADDLASGQSTFMVEMLETKYALQKATQNSLI 681 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 +LDEIGRGT+T DG+++A A IEY+H+ R + L +TH+HELT L K L N + Sbjct: 682 LLDEIGRGTSTYDGMALAQAIIEYIHDEIRAKTLFSTHYHELTALEKELSDVKNVHVSAV 741 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF--EKLYHHNQKD-- 849 + ++FLHKV+ G AD SYGI V +LAGLPN V RA +L EK ++K+ Sbjct: 742 EEQGTVVFLHKVVDGQADRSYGIYVAELAGLPNVVTERAETLLAELEGEKEIVASEKEVA 801 Query: 850 -------MRLYYPE----IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 + L+ PE + K +K LS +K + ++ +++ +PL A++ L Sbjct: 802 STNEPTQLSLFEPEPLEAYKPKGNKQPLSDEEKTVLHDLQSVDVLNTTPLEAIRLL 857 >gi|254827664|ref|ZP_05232351.1| DNA mismatch repair protein mutS [Listeria monocytogenes FSL N3-165] gi|258600043|gb|EEW13368.1| DNA mismatch repair protein mutS [Listeria monocytogenes FSL N3-165] Length = 860 Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust. Identities = 312/891 (35%), Positives = 498/891 (55%), Gaps = 55/891 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+EIK D+ +F+R+GDFYE+FF+DAL AS+ L ITLT R + IPMCG Sbjct: 5 TPMIKQYLEIKDKYQDAFLFFRLGDFYEMFFEDALNASQILEITLTGREGGTKEKIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A+ YI LI+ G+++AICEQ+E P + K +V+R VV+L++PGT+ +++ L Sbjct: 65 VPYHSASGYIDTLIEKGYKVAICEQVEDP-----KTTKGMVKREVVQLISPGTVMDERGL 119 Query: 146 SPTDSNYLMAVARIR-TEWAIAWIDISTGIFK--ISTSNHDRLISDIMRIDPREIIFSEK 202 ++NY+ ++ E+ A+ D+STG K + ++ DRLI+++ + RE+I S Sbjct: 120 KAKENNYIASLYCYEGKEYGFAYSDLSTGELKSTVIEASEDRLINELTTLSTRELIVSSS 179 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 E E L +V Q + F S+ E N V S S EK A Sbjct: 180 EK---------EVLSDVMKEQLGLTF--SVHEEDTIPAENEKLVTRHMSLS--EKRAIGK 226 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDYS 321 + Y+K+TQ + + + + + +D ++ NLE+ ++ G R+ +LL +D + Sbjct: 227 LLHYLKETQKRDLGHLQQAVHYETSNYMKMDYYSKRNLELAESIRGKGRQGTLLWLLDNT 286 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSI-----NFFIQNPILINPIQKILKSSPDVPR 376 T GGR+ + I PL D KI R + + +FF + ++ N LK+ D+ R Sbjct: 287 QTAMGGRMLKQWIDRPLIDRKKIIERQNDVSELMAHFFERLELVEN-----LKNVYDLER 341 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 R+ G +D+ +R+ + I + L + E L E+L + EK L Sbjct: 342 LAGRVAYGNVNARDLIQLRNSLYQ-IPRIRATLISMSSESLTELAEQLDPCEELTEK-LE 399 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + D P R+GG ++DG ++ LD R K IA L+ K E T IK LK+ N Sbjct: 400 EAIMDSAPISIREGGIIKDGYNSQLDTYRDASRNGKTWIAELERKERELTGIKTLKVGFN 459 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+IEVT ++ +L + R+ +QT++N R+ T EL + E I +A ++ Sbjct: 460 RVFGYYIEVTRANTHLL-----PEGRYERKQTLTNAERYITPELKEKEKLILDAEEKSME 514 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E + F + + + E L ++ ++ ID + A ++++ ++ RP + + VK Sbjct: 515 LEYQLFSEVREMVKDYIERLQKLAKSVSEIDCLQSFADISEKNHFIRPTLSEDGSLHVKQ 574 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VEK + QS ++ANDCDL D+N ++ L+TGPNM GKST++RQ AL I Sbjct: 575 GRHPVVEKVMGAQS---YVANDCDL----DENR-EILLITGPNMSGKSTYMRQVALTAIC 626 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+G +VPA A + I D++F+R+G+AD+L +G+STFMVEM+E + + AT S ++ D Sbjct: 627 AQVGCFVPAEEAILPIFDQIFTRIGAADDLIAGQSTFMVEMLEARNAIVHATKDSLILFD 686 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGTAT DG+++A A IEY+HE + L +TH+HELTDL K L+ N + + N Sbjct: 687 EIGRGTATYDGMALAQAIIEYIHENVHAKTLFSTHYHELTDLEKELRGLQNIHVSAVEEN 746 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE----KLYHHNQKDMRL 852 ++FLHK+ G AD SYGI V +LA LP ++I RA IL+ E K+ + K Sbjct: 747 GKVVFLHKIKEGPADKSYGIHVAELAELPKSLIERASRILEQLENDDKKIIIASVKQPEE 806 Query: 853 YYPEIQTK----ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + E+Q E + S + +++I +N+ +M+P+ A+ LY +++ Sbjct: 807 VHEEVQLSMFPLEPEKKASSKETKLLKEIASMNIMQMTPMDAMNKLYELQS 857 >gi|209525557|ref|ZP_03274096.1| DNA mismatch repair protein MutS [Arthrospira maxima CS-328] gi|209494056|gb|EDZ94372.1| DNA mismatch repair protein MutS [Arthrospira maxima CS-328] Length = 883 Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust. Identities = 305/842 (36%), Positives = 471/842 (55%), Gaps = 47/842 (5%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPMCG 85 MM++YIE+K P +L+F+R+GDF+E FF DA+ +R L + T + GK +G+ +PM G Sbjct: 28 MMQRYIEVKDQYPHALLFFRVGDFFECFFQDAVTIARELELVQTTKSAGKEIGR-VPMTG 86 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 VP Y L++ G+ + IC+Q+E + + AK+R V+R + R++TPGTLT+DQ+ Sbjct: 87 VPFEHVYRYSNMLLEKGYPVVICDQVEDAAIAAKERRQ---VKREITRILTPGTLTDDQM 143 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTS-NHDRLISDIMRIDPREIIFSEKE 203 L +N+L AV W +A+ D+STG F + S N + L ++MR+ P EI+F Sbjct: 144 LPGRQNNFLAAVVIAGDHWGLAYADVSTGEFLATQSQNLEHLTQELMRLQPSEILFP--- 200 Query: 204 LSHAEYKSLFETLGNVAVAQPNVF---FDHSI----------SESRIADYYNITTVDTFG 250 +HA G + + P+ F +S+ + SRI + + + +++ G Sbjct: 201 -THAPDLGKMLRPGQKSESLPDCLPADFCYSLRSQIPFTLGEARSRILEEFKLRSLEGIG 259 Query: 251 SFS-QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SG 308 + + AA + Y+++TQ N + + L +D R NLEI +T+ G Sbjct: 260 CHNLPLGVRAAGGLLEYLEETQKQNAVPLQQLHSYTLSDYLILDYQTRRNLEITQTIRDG 319 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKIL 368 + + SLL ID + T G R + PL I +R D+I I N L +Q++L Sbjct: 320 TLQGSLLWAIDQTSTAMGARALRRWLLQPLLSIKGICSRYDTIQELINNAELRQDLQQLL 379 Query: 369 KSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP 428 + D+ R R G KD+ + D + S + L K+ L+ A++ + L Sbjct: 380 RKIYDLERLTGRAANGTANAKDLVSLADSL-SKLPQLAALAKSAKSPYLK-ALQNVPPLL 437 Query: 429 QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 + L + ++S L + P + ++GG ++ G D LD+ ++ + ++ IA+L+++ E T I Sbjct: 438 EELARKINSYLVESPPLYLKEGGLIKPGVDPQLDQMQAGAAEDQQWIANLEIQERERTGI 497 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 LK+ N GY+I +T S K ++ D +I +QT++N R+ T EL + E RI Sbjct: 498 PTLKVGFNKTFGYYISITRS------KSDQAPDDYIRKQTLTNEERYITPELKEREARIL 551 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 A +E E F L + + E ++ + S+ IA ID+ LA +A Q YCRP I Sbjct: 552 TAKEDLNQLEYEIFARLRDEVGEHTDLIREISRAIAAIDVLCGLAEIAVYQGYCRPEIVG 611 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP---------NDKNSGKLWLLTGPN 659 + +GRHP+VEK+L + F+ N L P + + L +LTGPN Sbjct: 612 GRELRIIEGRHPVVEKSL---PAGFFVPNTAQLGSPEVTLPTADISPPSHPDLIILTGPN 668 Query: 660 MGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIE 719 GKS +LRQ LI +MAQ+GS+VPA+ A + I D++F+RVG+ D+LA+G+STFMVEM E Sbjct: 669 ASGKSCYLRQIGLIQLMAQIGSFVPATSAKLSICDRIFTRVGAVDDLATGQSTFMVEMNE 728 Query: 720 TASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLS 779 TA+ILN AT +S V+LDEIGRGTAT DGLSIAW+ EYL T + R + ATH+HEL +L+ Sbjct: 729 TANILNHATPKSLVLLDEIGRGTATFDGLSIAWSVAEYLATTIKARTIFATHYHELNELA 788 Query: 780 KSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF 839 L N + V + + IIFLH+V PG AD SYGI+ G+LAGLP+ VI RA +++ Sbjct: 789 SILDNVANYQVTVKELPDKIIFLHQVQPGGADKSYGIEAGRLAGLPDVVIKRAKQVMRQI 848 Query: 840 EK 841 EK Sbjct: 849 EK 850 >gi|167001781|ref|ZP_02267573.1| DNA mismatch repair protein MutS [Burkholderia mallei PRL-20] gi|243062469|gb|EES44655.1| DNA mismatch repair protein MutS [Burkholderia mallei PRL-20] Length = 939 Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust. Identities = 312/892 (34%), Positives = 462/892 (51%), Gaps = 58/892 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ IKS +PD+LVFYRMGDFYELFF+DA A+R L +TLT+RG G I M G Sbjct: 69 TPMMQQYLRIKSEHPDTLVFYRMGDFYELFFEDAEKAARLLDLTLTQRGASAGTPIKMAG 128 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H Y+ KL+K G AICEQI P +K V R VVR+VTPGTLT+ LL Sbjct: 129 VPHHAVEQYLAKLVKFGESAAICEQIGDPAT-----SKGPVERKVVRVVTPGTLTDAALL 183 Query: 146 SPTDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 S +L+A+ + + +AW+++++G +++ D+L + + RI P EI+ Sbjct: 184 SDKSDVFLLALCVGHNKRGVASNIGLAWLNLASGALRLAELAPDQLGAALERIRPAEILA 243 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 ++ + +S+ +G + P FD + R+ D + ++D FG+ + Sbjct: 244 ADGTI-----ESVPAGMGAITRV-PAWHFDIASGTQRLCDQLEVASLDGFGAQALTSANG 297 Query: 260 AAAAIS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA A+ Y TQ + + E+ + +D + R NLE+ TL G+ +L + Sbjct: 298 AAGALLIYAAATQGQQLRHVRSLKVENESEYIGLDPSTRRNLELTETLRGTESPTLYSLL 357 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP--ILINPIQKILKSSPDVPR 376 D T G RL + P S R +I + P ++ ++ L+ DV R Sbjct: 358 DTCCTAMGSRLLRHWLHHPPRASVAAQARHQAIGALLDAPPNAGLDSLRSALRQIADVER 417 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 RL + P+D++ +RD L + E+ L + +LE Sbjct: 418 ITGRLALLSARPRDLSSLRD------TFAALPALRERVAEIASNAAALGRFEAALEPPPV 471 Query: 437 SMLSDDLPT---------FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 + DLPT RDGG + G DA LDE R + + + + L+ + T Sbjct: 472 CL---DLPTRAIAAEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLETRERARTG 528 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 I NL++++N G++IEVT + D + RQT+ N R+ T EL E++ Sbjct: 529 ISNLRVEYNKVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTFEDKA 582 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 +A AL E ++ + A++ E + +A +D+ A A A+ ++ P Sbjct: 583 LSAQERALARERALYDGVLQALLPHIEGCQRVASGLAELDLLAAFAERARTLDWVAPEFT 642 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 + + GRHP+VE ++Q FIANDC L+ KL L+TGPNMGGKSTF+ Sbjct: 643 DEIGIEIDQGRHPVVEAQVEQ-----FIANDCALN-----PERKLLLITGPNMGGKSTFM 692 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ ALI +MA +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+ILN A Sbjct: 693 RQTALIALMAYVGSYVPAKAARFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILNDA 752 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 T S V++DEIGRGT+T DGL++AWA +L NRC L ATH+ ELT L + N Sbjct: 753 TPHSLVLMDEIGRGTSTFDGLALAWAIARHLLSHNRCYTLFATHYFELTQLPAEFPQAAN 812 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN- 846 L + GI+FLH V G A+ SYG+QV +LAG+P VI A L E+ Sbjct: 813 VHLSAVEHGHGIVFLHAVEEGPANQSYGLQVAQLAGVPAPVIRAARKHLAHLEQQSAAQA 872 Query: 847 --QKDMRLYYPEIQTKE-SKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 Q D+ P + E ++ + +E++ L+ D++ P AL LY Sbjct: 873 TPQLDLFAAPPVVDEPECNEPPAAATPHPALERLLELDPDDLKPRDALDLLY 924 >gi|46907631|ref|YP_014020.1| DNA mismatch repair protein MutS [Listeria monocytogenes serotype 4b str. F2365] gi|67460882|sp|Q71ZR7|MUTS_LISMF RecName: Full=DNA mismatch repair protein mutS gi|46880899|gb|AAT04197.1| DNA mismatch repair protein MutS [Listeria monocytogenes serotype 4b str. F2365] Length = 860 Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust. Identities = 313/894 (35%), Positives = 500/894 (55%), Gaps = 61/894 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+EIK D+ +F+R+GDFYE+FF+DAL AS+ L ITLT R + IPMCG Sbjct: 5 TPMIKQYLEIKDKYQDAFLFFRLGDFYEMFFEDALNASQILEITLTGREGGTKEKIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A+ YI LI+ G+++AICEQ+E P + K +V+R VV+L++PGT+ +++ L Sbjct: 65 VPYHSASGYIDTLIEKGYKVAICEQVEDP-----KTTKGMVKREVVQLISPGTVMDERGL 119 Query: 146 SPTDSNYLMAVARIRT-EWAIAWIDISTGIFK--ISTSNHDRLISDIMRIDPREIIFSEK 202 ++NY+ ++ E+ A+ D+STG K + ++ DRLI+++ + RE+I S Sbjct: 120 KAKENNYIASLYCYEAKEYGFAYSDLSTGELKSTVIEASEDRLINELTTLSTRELIVSSS 179 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 E E L +V Q + F S+ E N V S S EK A Sbjct: 180 EK---------EVLSDVMKEQLGLTF--SVHEEDTIPVENEKLVTRHMSLS--EKRAIGK 226 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDYS 321 + Y+K+TQ + + + + + +D ++ NLE+ ++ G R+ +LL +D + Sbjct: 227 LLHYLKETQKRDLGHLQQAVHYETSNYMKMDYYSKRNLELAESIRGKGRQGTLLWLLDNT 286 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSI-----NFFIQNPILINPIQKILKSSPDVPR 376 T GGR+ + I PL D KI R + + +FF + ++ N LK+ D+ R Sbjct: 287 QTAMGGRMLKQWIDRPLIDRKKIIDRQNDVSELMAHFFERLELVEN-----LKNVYDLER 341 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R+ G +D+ +R+ + I L + ++ EL ++ ++L + LE+ Sbjct: 342 LAGRVAYGNVNARDLIQLRNSLYQIPRIRATLLSMSSESLTELANQLDPCEELTEKLEEA 401 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + D P R+GG ++DG ++ LD R K IA L+ K E T IK +K+ Sbjct: 402 IM----DSAPISIREGGIIKDGYNSQLDTYRDASRNGKTWIAELERKERELTGIKTMKVG 457 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N GY+IEVT ++ +L + R+ +QT++N R+ T EL + E I +A + Sbjct: 458 FNRVFGYYIEVTRANTHLL-----PEGRYERKQTLTNAERYITPELKEKEKLILDAEEKS 512 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E + F + + + E L ++ ++ ID + A ++++ ++ RP + + V Sbjct: 513 MELEYQLFSEVREMVKDYIERLQKLAKSVSEIDCLQSFADISEKNHFIRPTLSEDGSLHV 572 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 K GRHP+VEK + QS ++ANDCDL D+N ++ L+TGPNM GKST++RQ AL Sbjct: 573 KQGRHPVVEKVMGAQS---YVANDCDL----DENR-EILLITGPNMSGKSTYMRQVALTA 624 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 I AQ+G +VPA A + I D++F+R+G+AD+L +G+STFMVEM+E + + AT S ++ Sbjct: 625 ICAQVGCFVPAEEAILPIFDQIFTRIGAADDLIAGQSTFMVEMLEARNAIVHATKDSLIL 684 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 DEIGRGTAT DG+++A A IEY+HE + L +TH+HELTDL K L N + + Sbjct: 685 FDEIGRGTATYDGMALAQAIIEYIHENVHAKTLFSTHYHELTDLEKELSGLQNIHVSAVE 744 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE----KLYHHNQKDM 850 N ++FLHK+ G AD SYGI V +LA LP ++I RA IL+ E K+ + K Sbjct: 745 ENGKVVFLHKIKEGPADKSYGIHVAELAELPKSLIERASRILEQLENDDKKIIIASVKQP 804 Query: 851 RLYYPEIQ-----TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + E+Q + K SK KL E I +N+ +M+P+ A+ LY +++ Sbjct: 805 EEVHEEVQLSMFPVEPEKKASSKETKLLKE-IASMNIMQMTPMDAMNKLYELQS 857 >gi|253569105|ref|ZP_04846515.1| DNA mismatch repair protein mutS [Bacteroides sp. 1_1_6] gi|251841124|gb|EES69205.1| DNA mismatch repair protein mutS [Bacteroides sp. 1_1_6] Length = 872 Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust. Identities = 306/886 (34%), Positives = 493/886 (55%), Gaps = 41/886 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+Q++++K+ +PD+++ +R GDFYE + DA++AS LGITLTKR GK I M G Sbjct: 9 TPMMKQFLDLKAKHPDAVMLFRCGDFYETYSTDAIVASEILGITLTKRANGKGKTIEMAG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KLI+ G R+AIC+Q+E P KK LV+R + LVTPG D +L Sbjct: 69 FPHHALDTYLPKLIRAGKRVAICDQLEDPKLTKK-----LVKRGITELVTPGVSINDNVL 123 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF--SEKE 203 + ++N+L AV + +A++DISTG F + D + + P+EI+F ++ Sbjct: 124 NYKENNFLAAVHFGKASCGVAFLDISTGEFLTAEGPFDYVDKLLNNFGPKEILFERGKRL 183 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + + S F T + F S + ++ ++ + FG A+ A Sbjct: 184 MFEGNFGSKFFTF-----ELDDWVFTESTAREKLLKHFETKNLKGFGVEHLKNGIIASGA 238 Query: 264 I-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 I Y+ TQ I R + + +D +LE++ +++ SLL ID +I Sbjct: 239 ILQYLTMTQHTQIGHITSLARIEEDKYVRLDKFTVRSLELIGSMNDGG-SSLLNVIDRTI 297 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 + G RL + PL D IN RL+ + +F + P I++ L D+ R +S++ Sbjct: 298 SPMGARLLKRWMVFPLKDEKPINDRLNVVEYFFRQPDFKELIEEQLHLIGDLERIISKVA 357 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 +GR P+++ ++ +++ I L+ D L E+L L S+ ++ +++D Sbjct: 358 VGRVSPREVVQLKVALQAIEPIKQACLEAD-NASLNRIGEQLN-LCISIRDRIAKEINND 415 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P GG ++DG + LDE R + K + +Q + +E+T I +LK+ +NN GY+ Sbjct: 416 PPLLINKGGVIKDGVNEELDELRRISYSGKDYLLQIQQRESEQTGIPSLKVAYNNVFGYY 475 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IEV + + KD + +I +QT+ N R+ T EL E +I A + L++E + + Sbjct: 476 IEVRN-----IHKD-KVPQEWIRKQTLVNAERYITQELKVYEEKILGAEDKILVLETQLY 529 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 L A+ E + + IA +D ++ A +A+E NY RP+I+++ ++ GRHP++ Sbjct: 530 TDLVQALTEFIPQIQINANQIARLDCLLSFANVARENNYIRPVIEDNDVLDIRQGRHPVI 589 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 EK L + +IAND L D + ++ ++TGPNM GKS LRQ ALI ++AQ+GS+ Sbjct: 590 EKQLP--IGEKYIANDVML----DSTTQQIIIITGPNMAGKSALLRQTALITLLAQIGSF 643 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA AHIG+VDK+F+RVG++DN++ G STFMVEM E A ILN +++S V+ DE+GRGT Sbjct: 644 VPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNVSSRSLVLFDELGRGT 703 Query: 743 ATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 +T DG+SIAWA +EY+HE + R L ATH+HEL ++ KS KR N + V + + +I Sbjct: 704 STYDGISIAWAIVEYIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEVDNKVI 763 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 FL K+ G ++HS+GI V K+AG+P +++ RA ILK E N++ P + Sbjct: 764 FLRKLERGGSEHSFGIHVAKMAGMPKSIVKRANTILKQLES---DNRQQGISGKPLTEVS 820 Query: 861 ESKNNLSKNDKLFVEKIKC------LNLD--EMSPLTALKTLYAVK 898 E+++ + + + I C LNLD ++P+ AL L +K Sbjct: 821 ENRSGMQLSFFQLDDPILCQIRDEILNLDVNNLTPIEALNKLNDIK 866 >gi|254932588|ref|ZP_05265947.1| DNA mismatch repair protein mutS [Listeria monocytogenes HPB2262] gi|293584147|gb|EFF96179.1| DNA mismatch repair protein mutS [Listeria monocytogenes HPB2262] gi|328466112|gb|EGF37279.1| DNA mismatch repair protein MutS [Listeria monocytogenes 1816] gi|332311844|gb|EGJ24939.1| DNA mismatch repair protein mutS [Listeria monocytogenes str. Scott A] Length = 860 Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust. Identities = 309/893 (34%), Positives = 501/893 (56%), Gaps = 59/893 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+EIK D+ +F+R+GDFYE+FF+DAL AS+ L ITLT R + IPMCG Sbjct: 5 TPMIKQYLEIKDKYQDAFLFFRLGDFYEMFFEDALNASQILEITLTGREGGTKEKIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A+ YI LI+ G+++AICEQ+E P + K +V+R VV+L++PGT+ +++ L Sbjct: 65 VPYHSASGYIDTLIEKGYKVAICEQVEDP-----KTTKGMVKREVVQLISPGTVMDERGL 119 Query: 146 SPTDSNYLMAVARIR-TEWAIAWIDISTGIFK--ISTSNHDRLISDIMRIDPREIIFSEK 202 ++NY+ ++ E+ A+ D+STG K + ++ DRLI+++ + RE+I S Sbjct: 120 KAKENNYIASLYCYEGKEYGFAYSDLSTGELKSTVIEASEDRLINELTTLSTRELIVSSS 179 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 E E L +V Q + F S+ E N V S S EK A Sbjct: 180 EK---------EVLSDVMKEQLGLTF--SVHEEDTIPVENEKLVTRHMSLS--EKRAIGK 226 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDYS 321 + Y+K+TQ + + + + + +D ++ NLE+ ++ G R+ +LL +D + Sbjct: 227 LLHYLKETQKRDLGHLQQAVHYETSNYMKMDYYSKRNLELAESIRGKGRQGTLLWLLDNT 286 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSI-----NFFIQNPILINPIQKILKSSPDVPR 376 T GGR+ + I PL D KI R + + +FF + ++ N LK+ D+ R Sbjct: 287 QTAMGGRMLKQWIDRPLIDRKKIIDRQNDVSELMAHFFERLELVEN-----LKNVYDLER 341 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R+ G +D+ +R+ + I L + ++ EL ++ ++L + LE+ Sbjct: 342 LAGRVAYGNVNARDLIQLRNSLYQIPRIRATLLSMSSESLTELANQLDPCEELTEKLEEA 401 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + D P R+GG ++DG ++ LD R K IA L+ K E T IK +K+ Sbjct: 402 IM----DSAPISIREGGIIKDGYNSQLDTYRDASRNGKTWIAELERKERELTGIKTMKVG 457 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N GY+IEVT ++ +L + R+ +QT++N R+ T EL + E I +A + Sbjct: 458 FNRVFGYYIEVTRANTHLL-----PEGRYERKQTLTNAERYITPELKEKEKLILDAEEKS 512 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E + F + + + E L ++ ++ ID + A ++++ ++ RP + + V Sbjct: 513 MELEYQLFSEVREMVKDYIERLQKLAKSVSEIDCLQSFADISEKNHFIRPTLSEDGSLHV 572 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 K GRHP+VEK + QS ++ANDCDL D+N ++ L+TGPNM GKST++RQ AL Sbjct: 573 KQGRHPVVEKVMGAQS---YVANDCDL----DENR-EILLITGPNMSGKSTYMRQVALTA 624 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 I AQ+G +VPA A + I D++F+R+G+AD+L +G+STFMVEM+E + + AT S ++ Sbjct: 625 ICAQVGCFVPAEEAILPIFDQIFTRIGAADDLIAGQSTFMVEMLEARNAIVHATKDSLIL 684 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 DEIGRGTAT DG+++A A IEY+HE + L +TH+HELTDL K L N + + Sbjct: 685 FDEIGRGTATYDGMALAQAIIEYIHENVHAKTLFSTHYHELTDLEKELSGLQNIHVSAVE 744 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE----KLYHHNQKDM 850 N ++FLHK+ G AD SYGI V +LA LP ++I RA IL+ E K+ + K Sbjct: 745 ENGKVVFLHKIKEGPADKSYGIHVAELAELPKSLIERASRILEQLENDDKKIIIASVKQP 804 Query: 851 RLYYPEIQTK----ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + E+Q E + +S + +++I +N+ +M+P+ A+ LY +++ Sbjct: 805 EEVHEEVQLSMFPVEPEKKVSSKETKLLKEIASMNIMQMTPMDAMNKLYELQS 857 >gi|256829248|ref|YP_003157976.1| DNA mismatch repair protein MutS [Desulfomicrobium baculatum DSM 4028] gi|256578424|gb|ACU89560.1| DNA mismatch repair protein MutS [Desulfomicrobium baculatum DSM 4028] Length = 872 Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust. Identities = 304/890 (34%), Positives = 476/890 (53%), Gaps = 45/890 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY+ +K P +LVF+RMGDF+ELFF+DA +A+R L ITLT R +PMCG Sbjct: 7 TPMMEQYLRVKEEYPGTLVFFRMGDFFELFFEDAQIAARELQITLTSRNPGAENPVPMCG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H + Y+++L+ G+++A+C+Q+E P +AK LV+R V R++TPGT+ ED L Sbjct: 67 MPHHAIDEYLRQLLDKGYKVALCDQVEDPKQAK-----GLVKREVTRVLTPGTVVEDINL 121 Query: 146 SPTDSNYLMAVARIRTEW------AIAWIDISTGIFK-ISTSNHDRLISDIMRIDPREII 198 N+L A+ W +AW+D STG++ I T + L ++++DPRE++ Sbjct: 122 DAKGHNFLGALY-----WDADLGGGLAWVDFSTGVWSGIQTKSESVLWQWLVKMDPRELL 176 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISES---RIADYYNITTVDTFGSFSQV 255 +E + A K + ++ +FD + R N+ T+D + + Sbjct: 177 LTE---TQALPKGFEQWQARLSRYPQKSYFDERGARDKLLRAQAVPNLQTLDLDDKPALI 233 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SL 314 A ++Y++ TQ + + D+ +TL +D NLE+ RT+ G + + +L Sbjct: 234 R--CCGALLTYLELTQKRDLGHLSPFIPLDLSATLLLDEVTERNLELFRTMDGRKGRGTL 291 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 + +D + T GGRL R+ P D I + + + + +++ L + D+ Sbjct: 292 WQVLDQTQTPMGGRLLETRMHQPFKDLGSILPVQELVAYLHDGDGIREDLRRSLDTVYDL 351 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R +R+ + R PKD A ++ + + L+ + P A+ + + Sbjct: 352 ERLCTRIVVNRSTPKDFAALKASMGVLPRLRQALLELESPPPRLAALLRDWDNLDDVHGL 411 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L+ L+D LP +GG R G DA+LDE L D + +A + + I LK+ Sbjct: 412 LTRALADSLPPVITEGGLFRPGYDAALDELMDLTDHGEAALAGMLDRERAACNIPKLKLG 471 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 + GY+ E++ + A+ E FI RQT+ N R+ T EL LE ++ +A++ Sbjct: 472 YTKVFGYYFELSRAVAA------EPPAHFIRRQTLVNAERYITEELKILEEKLLSASDQR 525 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 E + F L + + + ++A +D + LA A++ + RP + + + Sbjct: 526 KTREYQLFLALREEVAGHRARFMHMATILAELDFAQGLAHAARKWEWSRPELHDGLEIAI 585 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 K GRHP+VE Q +I ND L +SG++ L+TGPNM GKST LRQ ALI Sbjct: 586 KGGRHPVVEAV---QGRSGYIPNDLTLD-----DSGRVLLITGPNMAGKSTVLRQVALIC 637 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 I+AQMG +VPA+ A +G+ D++FSRVG++DNLA G+STFMVEM ETA IL QA +S VI Sbjct: 638 ILAQMGGFVPAAKARLGLCDRIFSRVGASDNLAMGQSTFMVEMTETARILRQAGKRSLVI 697 Query: 735 LDEIGRGTATLDGLSIAWATIEYL-HETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 LDEIGRGT+T DGLS+AWA E L R L ATH+HELT L L N + + Sbjct: 698 LDEIGRGTSTFDGLSLAWAVAEELVRRQGGIRTLFATHYHELTVLEDRLPGVRNYNIAIK 757 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 + I+FL +++PG AD SYGI+V +LAG+P +V++RA +IL E+ K Sbjct: 758 EWKGDIVFLRRMVPGPADRSYGIEVARLAGVPASVVTRAKEILAVLERHAPGGAKRNDFI 817 Query: 854 YPEIQ----TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 ++ TK ++ + ++ +K LN++E+SPL AL L+ KA Sbjct: 818 SRQVSLPGLTKAPVSHKQPEEHEVLQALKKLNVNELSPLDALTLLHQWKA 867 >gi|189464859|ref|ZP_03013644.1| hypothetical protein BACINT_01203 [Bacteroides intestinalis DSM 17393] gi|189437133|gb|EDV06118.1| hypothetical protein BACINT_01203 [Bacteroides intestinalis DSM 17393] Length = 872 Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust. Identities = 299/886 (33%), Positives = 496/886 (55%), Gaps = 41/886 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+Q++++K+ +PD+++ +R GDFYE + DA++A+ LGITLTKR GK + M G Sbjct: 9 TPMMKQFLDLKAKHPDAVMLFRCGDFYETYSTDAVVAAEILGITLTKRANGKGKTVEMAG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KL++ G R+AIC+Q+E P KK LV+R + LVTPG D +L Sbjct: 69 FPHHALDTYLPKLVRAGKRVAICDQLEDPKMTKK-----LVKRGITELVTPGVSINDNIL 123 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF--SEKE 203 + ++N+L AV + +A++DISTG F + D + + P+E++F ++ Sbjct: 124 NYRENNFLAAVHFGKGACGVAFLDISTGEFLTAEGPFDYVDKLLNNFAPKEVLFERGKRG 183 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + + S F T + F + + ++ ++ + FG A+ A Sbjct: 184 MFEGNFGSKFFTF-----ELDDWVFTETTAREKLLKHFETKNLKGFGVEHLKNGIIASGA 238 Query: 264 I-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 I Y+ TQ I R + + +D +LE++ +++ SLL ID +I Sbjct: 239 ILQYLIMTQHTQIGHITSLARIEEDKYVRLDKFTVRSLELVGSMNDGG-SSLLNVIDKTI 297 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 + G RL + PL D IN RL+ + +F + P I++ L D+ R +S++ Sbjct: 298 SPMGARLLKRWLVFPLKDVLPINERLNVVEYFFRQPDFKELIEEQLHLIGDLERIISKVA 357 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 +GR P+++ ++ +++ I ++ D L E+L + +S+ + +++D Sbjct: 358 VGRVSPREVVALKVALQAIEPIKEACMEAD-NASLNRIGEQLN-ICKSIRDRIEKEINND 415 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P GG ++ G +A LDE R + K + +Q + +E T+I +LKI +NN GY+ Sbjct: 416 PPLLINKGGVMKSGVNAELDELRQIAYSGKDYLLQIQQRESELTEIPSLKIGYNNVFGYY 475 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IEV ++ + ++ +I +QT++N R+ T EL + E +I A + L++E + + Sbjct: 476 IEVRNTHKDKVPQE------WIRKQTLANAERYITQELKEYEEKILGAEDKILILETQLY 529 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 L A+ E ++ + IA +D ++ A +A+E NY RP+I+++ ++ GRHP++ Sbjct: 530 TELVQALSEFIPAIQVNANQIARLDCLLSFANVARENNYIRPVIEDNDVLDIRQGRHPVI 589 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 EK L + +IAND L D +S ++ ++TGPNM GKS LRQ ALI ++AQ+GS+ Sbjct: 590 EKQLP--IGEKYIANDVML----DSSSQQIIIITGPNMAGKSALLRQTALITLLAQIGSF 643 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA AHIG+VDK+F+RVG++DN++ G STFMVEM E A ILN + +S V+ DE+GRGT Sbjct: 644 VPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNLSPRSLVLFDELGRGT 703 Query: 743 ATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 +T DG+SIAWA +E++HE + R L ATH+HEL ++ KS KR N + V + + +I Sbjct: 704 STYDGISIAWAIVEHIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEVDNKVI 763 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 FL K+ G ++HS+GI V K+AG+P +++ RA DILK E N++ P + Sbjct: 764 FLRKLERGGSEHSFGIHVAKMAGMPKSIVKRANDILKQLEA---DNRQQGIASKPMAEVG 820 Query: 861 ESKNNLSKNDKLFVEKIKC------LNLD--EMSPLTALKTLYAVK 898 E++ + + + + C LNLD ++PL AL L +K Sbjct: 821 ETRGGMQLSFFQLEDPVLCQIRDEILNLDVNNLTPLEALNKLNDIK 866 >gi|298385787|ref|ZP_06995344.1| DNA mismatch repair protein MutS [Bacteroides sp. 1_1_14] gi|298261015|gb|EFI03882.1| DNA mismatch repair protein MutS [Bacteroides sp. 1_1_14] Length = 872 Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust. Identities = 306/886 (34%), Positives = 493/886 (55%), Gaps = 41/886 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+Q++++K+ +PD+++ +R GDFYE + DA++AS LGITLTKR GK I M G Sbjct: 9 TPMMKQFLDLKAKHPDAVMLFRCGDFYETYSTDAIVASEILGITLTKRANGKGKTIEMAG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KLI+ G R+AIC+Q+E P KK LV+R + LVTPG D +L Sbjct: 69 FPHHALDTYLPKLIRAGKRVAICDQLEDPKLTKK-----LVKRGITELVTPGVSINDNVL 123 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF--SEKE 203 + ++N+L AV + +A++DISTG F + D + + P+EI+F ++ Sbjct: 124 NYKENNFLAAVHFGKASCGVAFLDISTGEFLTAEGPFDYVDKLLNNFGPKEILFERGKRL 183 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + + S F T + F S + ++ ++ + FG A+ A Sbjct: 184 MFEGNFGSKFFTF-----ELDDWVFTESTAREKLLKHFETKNLKGFGVEHLKNGIIASGA 238 Query: 264 I-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 I Y+ TQ I R + + +D +LE++ +++ SLL ID +I Sbjct: 239 ILQYLTMTQHTQIGHITSLARIEEDKYVRLDKFTVRSLELIGSMNDGG-SSLLNVIDRTI 297 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 + G RL + PL D IN RL+ + +F + P I++ L D+ R +S++ Sbjct: 298 SPMGARLLKRWMVFPLKDEKPINDRLNVVEYFFRQPDFKELIEEQLHLIGDLERIISKVA 357 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 +GR P+++ ++ +++ I L+ D L E+L L S+ ++ +++D Sbjct: 358 VGRVSPREVVQLKVALQAIEPIKQACLEAD-NASLNRIGEQLN-LCISIRDRIAKEINND 415 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P GG ++DG + LDE R + K + +Q + +E+T I +LK+ +NN GY+ Sbjct: 416 PPLLINKGGVIKDGVNEELDELRRISYSGKDYLLQIQQRESEQTGIPSLKVAYNNVFGYY 475 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IEV + + KD + +I +QT+ N R+ T EL E +I A + L++E + + Sbjct: 476 IEVRN-----IHKD-KVPQEWIRKQTLVNAERYITQELKVYEEKILGAEDKILVLETQLY 529 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 L A+ E + + IA +D ++ A +A+E NY RP+I+++ ++ GRHP++ Sbjct: 530 TDLVQALTEFIPQIQINANQIARLDCLLSFANVARENNYIRPVIEDNDVLDIRQGRHPVI 589 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 EK L + +IAND L D + ++ ++TGPNM GKS LRQ ALI ++AQ+GS+ Sbjct: 590 EKQLP--IGEKYIANDVML----DSTTQQIIIITGPNMAGKSALLRQTALITLLAQIGSF 643 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA AHIG+VDK+F+RVG++DN++ G STFMVEM E A ILN +++S V+ DE+GRGT Sbjct: 644 VPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNVSSRSLVLFDELGRGT 703 Query: 743 ATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 +T DG+SIAWA +EY+HE + R L ATH+HEL ++ KS KR N + V + + +I Sbjct: 704 STYDGISIAWAIVEYIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEVDNKVI 763 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 FL K+ G ++HS+GI V K+AG+P +++ RA ILK E N++ P + Sbjct: 764 FLRKLERGGSEHSFGIHVAKMAGMPKSIVKRANTILKQLES---DNRQQGISGKPLAEVS 820 Query: 861 ESKNNLSKNDKLFVEKIKC------LNLD--EMSPLTALKTLYAVK 898 E+++ + + + I C LNLD ++P+ AL L +K Sbjct: 821 ENRSGMQLSFFQLDDPILCQIRDEILNLDVNNLTPIEALNKLNDIK 866 >gi|319786617|ref|YP_004146092.1| DNA mismatch repair protein MutS [Pseudoxanthomonas suwonensis 11-1] gi|317465129|gb|ADV26861.1| DNA mismatch repair protein MutS [Pseudoxanthomonas suwonensis 11-1] Length = 865 Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust. Identities = 303/891 (34%), Positives = 482/891 (54%), Gaps = 58/891 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M+Q+ K+ PD L+F+RMGDFYELF+DDA A+R L ITLT+RG G IPM G Sbjct: 14 TPLMKQFFAAKAEYPDLLLFFRMGDFYELFYDDARKAARLLDITLTQRGSSGGAPIPMAG 73 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH Y+ +L+ +G +AICEQI P +K LV R VVR+VTPGT+T++ LL Sbjct: 74 VPVHAYEGYLARLVALGESVAICEQIGDPA-----ASKGLVERKVVRIVTPGTVTDEALL 128 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKE- 203 LMAVAR R+ + +AW D+S G F +S N D+L +++ R++P E++ ++E Sbjct: 129 DERRDTLLMAVARGRSGYGLAWADLSAGRFLVSEVENADQLEAELARLEPAELLVPDEEG 188 Query: 204 ---LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ-VEKTA 259 LS + +P FD ++ ++ + + FG + + A Sbjct: 189 WPPLSAGALRR-----------RPPWLFDPDSGRRQLLRFFGLHDLTGFGIDDRPLAIAA 237 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A A + Y+++TQ P + E + +++A R +LE+ + G +LL +D Sbjct: 238 AGALLGYVEETQKQQLPHLTSIALETSGEAIAMNAATRRHLELDTRVDGQTRHTLLGVLD 297 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 +IT GGRL + PL D + R ++ I+ + ++ + DV R L+ Sbjct: 298 STITPMGGRLLRRWLHRPLRDRNVLGGRHHAVATLIEQRADAD-LRDGFRGLGDVERILT 356 Query: 380 RLKIGRGEPKDIAVIRD------GIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 R+ + P+D++ +RD GIR + L+ L +EL G ++ L Sbjct: 357 RVALRSARPRDLSTLRDALALLPGIRQALAPLDSPRLQALSDEL-GQHDETAHL------ 409 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L+S ++ P DGG + +G DA LDE R L + + + L+ + T I LK+ Sbjct: 410 -LASAVAPQPPLKLADGGVIAEGHDAELDELRRLSTNADQFLVDLEARERAATGIATLKV 468 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GY+IE++ + ++ + RQT++ R+ T EL E+++ +A Sbjct: 469 GYNRVHGYYIEISKGQSD------KAPVHYTRRQTLTGAERYITEELKSFEDKVLSARER 522 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL E +E L +++ E L + ++ +D+ A A A+ ++ RP + +S Sbjct: 523 ALAREKFLYEALLDSLNTVLEPLKRCAGALSELDVLAAFAERAQALDWARPELTDSPCLC 582 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 ++ GRHP+VE ++ PF ND +L D + ++ ++TGPNMGGKST++RQNALI Sbjct: 583 IERGRHPVVEAVREE----PFEPNDLELYGDRDGQARRMLVITGPNMGGKSTYMRQNALI 638 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 V++A +GS+VPAS A IG +D++ +R+G+ D+LA G+STFMVEM ET+ IL+ AT QS V Sbjct: 639 VLLAHIGSFVPASRAVIGPIDRILTRIGAGDDLARGQSTFMVEMAETSYILHHATEQSLV 698 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGL++A A +L NRC L ATH+ ELT L+ N L Sbjct: 699 LMDEIGRGTSTYDGLALADAVARHLATVNRCWTLFATHYFELTSLATPESGIANVHLDAV 758 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 + + ++F+H V G AD S+G+QV LAGLP +++A L E Q+ + Sbjct: 759 EHGDSLVFMHAVRDGAADRSFGLQVAALAGLPKATLAQARRRLAELE------QRGRETH 812 Query: 854 YPEIQTK-----ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 E+ + + ++ E + L+ DE++P AL+ LY +K+ Sbjct: 813 AAEVAPQALDAPQQFGLFAQAPSAAQEALAALDPDELTPKQALEALYRLKS 863 >gi|325289888|ref|YP_004266069.1| DNA mismatch repair protein MutS [Syntrophobotulus glycolicus DSM 8271] gi|324965289|gb|ADY56068.1| DNA mismatch repair protein MutS [Syntrophobotulus glycolicus DSM 8271] Length = 853 Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust. Identities = 315/890 (35%), Positives = 491/890 (55%), Gaps = 68/890 (7%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 ++TPM++QY IK+ PD ++F+R+GDFYE+F DDAL A+ L I LT R G IPM Sbjct: 2 ATTPMLKQYESIKAKVPDCILFFRLGDFYEMFADDALTAAPVLEIALTSREGGSGSRIPM 61 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVP H+A +YIQKLI G ++AICEQ E P ++K +V+R++VR+V+PGT+ D Sbjct: 62 CGVPHHSAENYIQKLIAAGFKVAICEQTEDPQQSK-----GIVKRDIVRIVSPGTV--DT 114 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSEK 202 + + +NYL A+ + +W +A++D++TG F++ T + L++++ RI+P EII K Sbjct: 115 VAAEHKNNYLAAIYK-EKDWGLAYLDLTTGDFRLFQTPSQQTLLNELNRINPAEIILP-K 172 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ--VEKTAA 260 E + + K+L N A +F + R +Y G Q V AA Sbjct: 173 EFAVSMSKALDGYYSNAA--DKTIFSSLAGFRERFHNYT--------GLLEQMPVSARAA 222 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQS-----TLFIDSAARSNLEILRTLS-GSREQSL 314 A +YIKK N P +++S + +D R NLE++ + G ++ Sbjct: 223 GALWNYIKK----NIPDSSLQNVIELKSCRQSEVMVLDRWTRKNLELVESSRFGDERGTI 278 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 ++ + T G R+ I PL + +I RLD++ +N + K L D+ Sbjct: 279 FDVLNLTKTAFGARMLRHWIQQPLLNKEQIEARLDTVEELTKNTFARQELFKCLSHVYDL 338 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R +RL G+ P+D+ + + + + ++ + L +E + L L Sbjct: 339 ERLTARLSYGKASPRDMLALAATLACLPEVRKIIHQHQV-LTLTKYLEPISGL-DDLSAK 396 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L ++ D P +G + +G +D R++ + IA L+ + E+TKIK+LKI Sbjct: 397 LLKAINPDAPVTLHEGNIINNGYIPEIDRLRAVASGGRDWIARLENQEREKTKIKSLKIG 456 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+IE+T++++ ++ +D +I +QT++N R+ T EL + E ++ NA Sbjct: 457 YNKVFGYYIEITNANSHLVPED------YIRKQTLANCERYITPELKEYEQQVLNAQEKL 510 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 +E + L + ++ + + NA+Q I ID+ ++LA A +Y RP I+N + Sbjct: 511 FDLEYAVYTELKDEVLSHTPPILNAAQAIGEIDVFLSLAEAAVRHHYVRPEINNEGTIHI 570 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDK---NSGKLWLLTGPNMGGKSTFLRQNA 671 +GRHP+VE+ DL PND +S L L+TGPNMGGKST++RQ A Sbjct: 571 VEGRHPVVEQVCN------------DLFVPNDTLLTSSKSLALITGPNMGGKSTYMRQVA 618 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LIV+++Q+GS+VPA A I + D +++RVG++DNLASG+STFMVEM E A IL A ++S Sbjct: 619 LIVLLSQVGSFVPAQKAAIALRDCIYTRVGASDNLASGQSTFMVEMNEVAFILQNAASRS 678 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYL--HETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 +ILDE+GRGTAT DGLS+AWA +EYL + T + L ATH+HELT L N Sbjct: 679 LIILDEVGRGTATYDGLSLAWAIVEYLAGNPTAQPLTLFATHYHELTALETMFPAVFNLH 738 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL----YHH 845 + V + I+FLHK++PG AD SYG+ V K+AGLP ++ RA IL+ E L Y Sbjct: 739 VAVREKGSDILFLHKILPGKADRSYGLHVAKIAGLPLDLLKRAESILRELESLSGETYPD 798 Query: 846 NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 + + P + +E + L K VE+I +LD M+P A+ LY Sbjct: 799 KATRVEVLQPSLFDQEEVHPLLKE----VEEI---DLDRMTPKQAMDYLY 841 >gi|332299823|ref|YP_004441744.1| DNA mismatch repair protein mutS [Porphyromonas asaccharolytica DSM 20707] gi|332176886|gb|AEE12576.1| DNA mismatch repair protein mutS [Porphyromonas asaccharolytica DSM 20707] Length = 874 Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust. Identities = 313/895 (34%), Positives = 493/895 (55%), Gaps = 52/895 (5%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 + TPMMRQY++ K +PD+++ +R+GDFYE F DDA+ AS+ LGITLTKR + + + Sbjct: 7 AETPMMRQYLQFKKKHPDAILLFRVGDFYETFSDDAIEASKILGITLTKRANGAAQHVEL 66 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G P H + Y+ KL++ G R+AIC+Q+E P K NK LV+R + +VTPG +T D Sbjct: 67 AGFPHHALDTYLPKLVRAGKRVAICDQLEDP----KLTNK-LVKRGITEIVTPGVVTTDN 121 Query: 144 LLSPTDSNYLMAV---ARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 +L +N+L AV A+ + +A +D+STG F S L + +P+EI+ Sbjct: 122 VLQSKQNNFLAAVYPQAKGENRYGLALLDLSTGEFYASECTDQVLAKLVSGYNPKEILIE 181 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTA 259 K H + L + G+++ + F S + R+ ++ ++ FG + + TA Sbjct: 182 RKHRDH--LQRLLQPEGHLS-DYDDWIFSESNNRERLLQHFGTLSLKGFGIDTLPLAITA 238 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A A + Y+ T+ I R D Q + ID +LE L T + +L + +D Sbjct: 239 AGAVLHYLDMTKHTEIGHITRIVRIDEQRHVRIDGFTAHSLE-LTTPMNAGGTTLRQILD 297 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 ++T G RL + IA PL + I R + + NP L + +K D+ R + Sbjct: 298 QTVTPMGARLLDQWIAFPLKELQAIQQRQSIVANLVDNPQLRTQLTDQMKEIGDLQRLVG 357 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLF----LKNDLPEELRGAVEKLKKLPQSLEKTL 435 R+ +GR P+++ +R G++I + L D EE A+ L L + + Sbjct: 358 RVAMGRITPREV------VRLGLSITLIAPIRQLALDEGEETLTALCSLLDPCAQLCQQI 411 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + L+ + P G + +G LD+ R L K+ + L + E T I +LKI Sbjct: 412 TFQLNPEAPQQIGKGETIAEGFCEELDQLRRLLKSGKQYLDDLLARETEHTGISSLKIGF 471 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 NN GY++EV ++ + + +I +QT+ + R+ T EL + E +I A + L Sbjct: 472 NNVFGYYLEVRNTYKE------QVPEEWIRKQTLVSAERYITQELKEYEEKILGAEDRIL 525 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E E F L + + + L +Q++A +D+ +LA +AK +YCRP ++ + + Sbjct: 526 ALEQELFAKLIGTLQQFANQLLQDAQILAQLDVLASLAAVAKAYDYCRPTLNEGYDLEIV 585 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 DGRHP++E+TL + +P+I ND LS P D ++ ++TGPNM GKS LRQ ALIVI Sbjct: 586 DGRHPVIERTLP--AGQPYIPNDVRLS-PID---CQIMIITGPNMSGKSALLRQTALIVI 639 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQMGS+VPA+ A IGIVD +++RVG++DN+A G STFMVEM E ASILN T +S ++ Sbjct: 640 MAQMGSFVPATSATIGIVDSVYTRVGASDNIAVGESTFMVEMQEAASILNNLTPRSLILF 699 Query: 736 DEIGRGTATLDGLSIAWATIEYLHET--NRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 DE+GRGT+T DG+SIAWA +EYLH T R + L ATH+HEL +L+ L+R + Sbjct: 700 DELGRGTSTFDGVSIAWAIVEYLHSTTQGRAKTLFATHYHELNELADHLERVQCYNVSAR 759 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 + + ++FL K++PG + HS+GIQV KLAG+P +++RA ++L+ E + + D Sbjct: 760 EIDGEMLFLRKLVPGGSAHSFGIQVAKLAGMPTWIVARAGEVLQHLEA--YRTESDQA-- 815 Query: 854 YPEIQTKESKNNLSKNDKLFV----------EKIKCLNLDEMSPLTALKTLYAVK 898 P+ T + + +F KI L+++ ++PL ALK L A+K Sbjct: 816 -PDSATPSTSQSGGMQMSIFQLDDPVLTAVRTKINELDINNLTPLDALKQLDALK 869 >gi|237722019|ref|ZP_04552500.1| DNA mismatch repair protein mutS [Bacteroides sp. 2_2_4] gi|298482523|ref|ZP_07000708.1| DNA mismatch repair protein MutS [Bacteroides sp. D22] gi|229448888|gb|EEO54679.1| DNA mismatch repair protein mutS [Bacteroides sp. 2_2_4] gi|298271230|gb|EFI12806.1| DNA mismatch repair protein MutS [Bacteroides sp. D22] Length = 872 Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust. Identities = 304/887 (34%), Positives = 494/887 (55%), Gaps = 43/887 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+Q++++K+ +PD+++ +R GDFYE + DA++A+ LGITLTKR GK I M G Sbjct: 9 TPMMKQFLDLKAKHPDAVMLFRCGDFYETYSTDAIVAAEILGITLTKRANGKGKTIEMAG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KL++ G R+AIC+Q+E P KK LV+R + LVTPG D +L Sbjct: 69 FPHHALDTYLPKLVRAGKRVAICDQLEDPKMTKK-----LVKRGITELVTPGVSINDNVL 123 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 + ++N+L AV + +A++DISTG F + D + + P+EI+F + Sbjct: 124 NYKENNFLAAVHFGKASCGVAFLDISTGEFLTAEGPFDYIDKLLNNFAPKEILFERGK-- 181 Query: 206 HAEYKSLFE-TLGN--VAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 + +FE GN + F + + ++ ++ + FG A+ Sbjct: 182 ----RLMFEGNFGNKFFTFELDDWVFTETTAREKLLKHFETKNLKGFGVEHLKNGIIASG 237 Query: 263 AI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 AI Y+ TQ I R + + +D +LE++ ++ SL+ ID + Sbjct: 238 AILQYLTMTQHTQIGHITSLARIEEDKYVRLDKFTVRSLELIGNMNDGG-SSLINVIDRT 296 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 I+ G RL + PL D IN RL+ + +F + P I++ L D+ R +S++ Sbjct: 297 ISPMGARLLKRWMVFPLKDEKPINERLNVVEYFFRQPDFKELIEEQLHLIGDLERIISKV 356 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 +GR P+++ ++ +++ I ++ D L E+L L S+ ++ + + Sbjct: 357 AVGRVSPREVVQLKVALQAIEPIKQACMEAD-NASLNRIGEQLN-LCISIRDRIAKEIKN 414 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 D P GG ++DG +A LDE R + K + +Q + +EET I +LK+ +NN GY Sbjct: 415 DPPLLINKGGVIQDGVNADLDELRQISYSGKDYLLKIQQRESEETGIPSLKVAYNNVFGY 474 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IEV + + KD + +I +QT+ N R+ T EL + E +I A + L++E + Sbjct: 475 YIEVRN-----VHKD-KVPPEWIRKQTLVNAERYITQELKEYEEKILGAEDKILVLETQL 528 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 + L A++E + + IA +D ++ A +A+E Y RPII+++ ++ GRHP+ Sbjct: 529 YTDLVQALMEFIPQIQINANQIARLDCLLSFANVARENRYIRPIIEDNDVLDIRQGRHPV 588 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 +EK L + +IAND L D ++ ++ ++TGPNM GKS LRQ ALI ++AQ+GS Sbjct: 589 IEKQLP--IGEKYIANDVML----DSDTQQIIIITGPNMAGKSALLRQTALITLLAQIGS 642 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA AHIG+VDK+F+RVG++DN++ G STFMVEM E A ILN +++S V+ DE+GRG Sbjct: 643 FVPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNVSSRSLVLFDELGRG 702 Query: 742 TATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 T+T DG+SIAWA +EY+HE + R L ATH+HEL ++ KS KR N + V + + + Sbjct: 703 TSTYDGISIAWAIVEYIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEVDNKV 762 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 IFL K+ G ++HS+GI V K+AG+P +++ RA +ILK E N++ P + Sbjct: 763 IFLRKLERGGSEHSFGIHVAKMAGMPKSIVKRANEILKQLES---DNRQQGIAGKPLAEV 819 Query: 860 KESKNNLSKNDKLFVEKIKC------LNLD--EMSPLTALKTLYAVK 898 E++ + + + I C LNLD ++P+ AL L +K Sbjct: 820 SENRGGMQLSFFQLDDPILCQIRDEILNLDVNNLTPIEALNKLNDIK 866 >gi|228469425|ref|ZP_04054439.1| DNA mismatch repair protein MutS [Porphyromonas uenonis 60-3] gi|228309109|gb|EEK17739.1| DNA mismatch repair protein MutS [Porphyromonas uenonis 60-3] Length = 874 Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust. Identities = 313/892 (35%), Positives = 496/892 (55%), Gaps = 46/892 (5%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 + TPMMRQY++ K +PD+++ +R+GDFYE F DDA+ AS+ LGITLTKR + + + Sbjct: 7 AETPMMRQYLQFKKKHPDAILLFRVGDFYETFSDDAIEASKILGITLTKRANGAAQHVEL 66 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G P H + Y+ KL++ G R+AIC+Q+E P K NK LV+R + +VTPG +T D Sbjct: 67 AGFPHHALDTYLPKLVRAGKRVAICDQLEDP----KLTNK-LVKRGITEIVTPGVVTTDN 121 Query: 144 LLSPTDSNYLMAV---ARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMR-IDPREIIF 199 +L +N+L AV A+ + +A +D+STG F +T D++++ + +P+EI+ Sbjct: 122 VLQSKQNNFLAAVYPEAKGENRYGLALLDLSTGEF-YATECTDQVLAKLTSGYNPKEILI 180 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKT 258 K H + L + G+++ + F S + R+ ++ ++ FG + + T Sbjct: 181 ERKHRDH--LQRLLQPEGHLS-DYDDWIFSESNNRERLLQHFGTLSLKGFGIDTLPLAIT 237 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA A + Y+ T+ I R D Q + ID +LE L T + +L + + Sbjct: 238 AAGAVLHYLDMTKHTEIGHITRIVRIDEQRHVRIDGFTAHSLE-LTTPMNAGGTTLRQIL 296 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D ++T G RL + IA PL + I R + + NP L + +K D+ R + Sbjct: 297 DQTVTPMGARLLDQWIAFPLKELQAIQQRQSIVANLVDNPQLRTKLTDQMKEIGDLQRLV 356 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 R+ +GR P++ V+R G+ + L D EE + L L + ++ Sbjct: 357 GRVAMGRITPRE--VVRLGLSIALIAPIRQLALDEGEETLTTLCSLLDPCTQLCQQITFQ 414 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 L+ + P G + +G LD+ R L K+ + L + E T I +LKI NN Sbjct: 415 LNPEAPQQIGKGATIAEGFCEELDQLRRLLKSGKQYLDDLLARETEHTGISSLKIGFNNV 474 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY++EV ++ + + +I +QT+ N R+ T EL + E +I A + L +E Sbjct: 475 FGYYLEVRNTYKE------QVPEEWIRKQTLVNAERYITQELKEYEEKILGAEDRILALE 528 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 E F L + + + L +Q++A +D+ +LA +A+ +YCRP +++ + + DGR Sbjct: 529 QELFAKLIGTLQQFANQLLQDAQILAQLDVLASLAAVAEAYDYCRPTLNDGYDLEIVDGR 588 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP++E+TL + +P+I ND LS P D ++ ++TGPNM GKS LRQ ALIVIMAQ Sbjct: 589 HPVIERTLP--AGQPYIPNDVKLS-PID---CQIMIITGPNMSGKSALLRQTALIVIMAQ 642 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 MGS+VPA+ A IGIVD +++RVG++DN+A G STFMVEM E ASILN T +S ++ DE+ Sbjct: 643 MGSFVPATSATIGIVDSVYTRVGASDNIAVGESTFMVEMQEAASILNNLTPRSLILFDEL 702 Query: 739 GRGTATLDGLSIAWATIEYLHET--NRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 GRGT+T DG+SIAWA +EYLH T R + L ATH+HEL +L+ L+R + + + Sbjct: 703 GRGTSTFDGVSIAWAIVEYLHSTTQGRAKTLFATHYHELNELADHLERVQCYNVSAREID 762 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 ++FL K++PG + HS+GIQV KLAG+P +++RA ++L+ E + + D P+ Sbjct: 763 GEMLFLRKLVPGGSAHSFGIQVAKLAGMPTWIVARAGEVLQHLEA--YRTESDQA---PD 817 Query: 857 IQTKESKNNLSKNDKLFV----------EKIKCLNLDEMSPLTALKTLYAVK 898 T + + +F KI L++D ++PL ALK L A+K Sbjct: 818 SATPSTSQSGGMQMSIFQLDDPVLTAVRTKINELDIDNLTPLDALKQLDALK 869 >gi|283835500|ref|ZP_06355241.1| DNA mismatch repair protein MutS [Citrobacter youngae ATCC 29220] gi|291068702|gb|EFE06811.1| DNA mismatch repair protein MutS [Citrobacter youngae ATCC 29220] Length = 853 Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust. Identities = 310/900 (34%), Positives = 487/900 (54%), Gaps = 73/900 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +NL + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 DNLDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPHHAVENYLAKLVNQGESVAICEQIGDPTT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L AV + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAVWQDSKGYGYATLDISSGRFRVSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAE-TSLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLIG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y+K TQ + P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYVKDTQRTSLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGVENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I + + +Q L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTKILTERQQTIGALQDS---TSELQPALRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E++ P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLERVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L + L + + P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFAELRELLERAVVEAPPVLVRDGGVIATGYNEELDEWRALADGATDYLDRLEIRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + ++ L + ++ L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALALEKQLYDELFDMLLPHLADLQQSASTLAELDVLVNLAERAYTLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFTDKPGIRITEGRHPVVEQVL----TEPFIANPLNLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQTALIALLAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATENSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 740 EGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 799 Query: 843 YHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + Q D T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 800 APNVAATQVD--------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|254824537|ref|ZP_05229538.1| DNA mismatch repair protein mutS [Listeria monocytogenes FSL J1-194] gi|254852551|ref|ZP_05241899.1| DNA mismatch repair protein mutS [Listeria monocytogenes FSL R2-503] gi|255522220|ref|ZP_05389457.1| DNA mismatch repair protein MutS [Listeria monocytogenes FSL J1-175] gi|300765757|ref|ZP_07075733.1| DNA mismatch repair protein MutS [Listeria monocytogenes FSL N1-017] gi|258605862|gb|EEW18470.1| DNA mismatch repair protein mutS [Listeria monocytogenes FSL R2-503] gi|293593776|gb|EFG01537.1| DNA mismatch repair protein mutS [Listeria monocytogenes FSL J1-194] gi|300513532|gb|EFK40603.1| DNA mismatch repair protein MutS [Listeria monocytogenes FSL N1-017] Length = 860 Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust. Identities = 313/894 (35%), Positives = 500/894 (55%), Gaps = 61/894 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+EIK D+ +F+R+GDFYE+FF+DAL AS+ L ITLT R + IPMCG Sbjct: 5 TPMIKQYLEIKDKYQDAFLFFRLGDFYEMFFEDALNASQILEITLTGREGGTKEKIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A+ YI LI+ G+++AICEQ+E P + K +V+R VV+L++PGT+ +++ L Sbjct: 65 VPYHSASGYIDTLIEKGYKVAICEQVEDP-----KTTKGMVKREVVQLISPGTVMDERGL 119 Query: 146 SPTDSNYLMAVARIR-TEWAIAWIDISTGIFK--ISTSNHDRLISDIMRIDPREIIFSEK 202 ++NY+ ++ E+ A+ D+STG K + ++ DRLI+++ + RE+I S Sbjct: 120 KAKENNYIASLYCYEGKEYGFAYSDLSTGELKSTVIEASEDRLINELTTLSTRELIVSSS 179 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 E E L +V Q + F S+ E N V S S EK A Sbjct: 180 EK---------EVLSDVMKEQLGLTF--SVHEEDTIPVENEKLVTRHMSLS--EKRAIGK 226 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDYS 321 + Y+K+TQ + + + + + +D ++ NLE+ ++ G R+ +LL +D + Sbjct: 227 LLHYLKETQKRDLGHLQQAVHYETSNYMKMDYYSKRNLELAESIRGKGRQGTLLWLLDNT 286 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSI-----NFFIQNPILINPIQKILKSSPDVPR 376 T GGR+ + I PL D KI R + + +FF + ++ N LK+ D+ R Sbjct: 287 QTAMGGRMLKQWIDRPLIDRKKIIDRQNDVSELMAHFFERLELVEN-----LKNVYDLER 341 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R+ G +D+ +R+ + I L + ++ EL ++ ++L + LE+ Sbjct: 342 LAGRVAYGNVNARDLIQLRNSLYQIPRIRATLLSMSSESLTELANQLDPCEELTEKLEEA 401 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + D P R+GG ++DG ++ LD R K IA L+ K E T IK +K+ Sbjct: 402 IM----DSAPISIREGGIIKDGYNSQLDTYRDASRNGKTWIAELERKERELTGIKTMKVG 457 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N GY+IEVT ++ +L + R+ +QT++N R+ T EL + E I +A + Sbjct: 458 FNRVFGYYIEVTRANTHLL-----PEGRYERKQTLTNAERYITPELKEKEKLILDAEEKS 512 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E + F + + + E L ++ ++ ID + A ++++ ++ RP + + V Sbjct: 513 MELEYQLFSEVREMVKDYIERLQKLAKSVSEIDCLQSFADISEKNHFIRPTLSEDGSLHV 572 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 K GRHP+VEK + QS ++ANDCDL D+N ++ L+TGPNM GKST++RQ AL Sbjct: 573 KQGRHPVVEKVMGAQS---YVANDCDL----DENR-EILLITGPNMSGKSTYMRQVALTA 624 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 I AQ+G +VPA A + I D++F+R+G+AD+L +G+STFMVEM+E + + AT S ++ Sbjct: 625 ICAQVGCFVPAEEAILPIFDQIFTRIGAADDLIAGQSTFMVEMLEARNAIVHATKDSLIL 684 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 DEIGRGTAT DG+++A A IEY+HE + L +TH+HELTDL K L N + + Sbjct: 685 FDEIGRGTATYDGMALAQAIIEYIHENVHAKTLFSTHYHELTDLEKELSGLQNIHVSAVE 744 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE----KLYHHNQKDM 850 N ++FLHK+ G AD SYGI V +LA LP ++I RA IL+ E K+ + K Sbjct: 745 ENGKVVFLHKIKEGPADKSYGIHVAELAELPKSLIERASRILEQLENDDKKIIIASVKQP 804 Query: 851 RLYYPEIQ-----TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + E+Q + K SK KL E I +N+ +M+P+ A+ LY +++ Sbjct: 805 EEVHEEVQLSMFPVEPEKKASSKETKLLKE-IASMNIMQMTPMDAMNKLYELQS 857 >gi|237747449|ref|ZP_04577929.1| DNA mismatch repair protein mutS [Oxalobacter formigenes HOxBLS] gi|229378800|gb|EEO28891.1| DNA mismatch repair protein mutS [Oxalobacter formigenes HOxBLS] Length = 892 Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust. Identities = 326/914 (35%), Positives = 479/914 (52%), Gaps = 50/914 (5%) Query: 5 FSSPQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASR 64 +SP K S + TPMM+QY+ IK+ +PD L+ YRMGDFYELFFDDA+ ASR Sbjct: 1 MTSPSK-RSPSVQATPETARQTPMMQQYLRIKAQHPDMLLLYRMGDFYELFFDDAVTASR 59 Query: 65 CLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKS 124 LGITLT+R G+++ M G+P H + Y+ KLI G +AICEQI P +K Sbjct: 60 ILGITLTQRAS-TGRNVAMAGIPFHALDQYLAKLIATGESVAICEQIGDP-----STSKG 113 Query: 125 LVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAV----ARIRTEWAIAWIDISTGIFKISTS 180 V R VVR+VTPGTLT+ LL L+A+ R + + W+ +S+G K+ Sbjct: 114 PVERKVVRIVTPGTLTDSNLLPEKVDRPLLAIDCRKNRKQLTLGMTWLSLSSGSLKLLEV 173 Query: 181 NHD------RLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISE 234 D RL +I RI EI+ + KS V P FD E Sbjct: 174 AVDEKNLLSRLQQEIERIGAAEILIPD-----GFDKSWLAGFAARVVTVPEWHFDRENGE 228 Query: 235 SRIADYYNITTVDTFGSFSQVEKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFID 293 + + ++ ++D FG+ A AI Y TQ N I E + +D Sbjct: 229 KELLEQLHVISLDGFGASGLNPALGAVGAILKYAHSTQSQNLQHIKTLAVESEDDYITMD 288 Query: 294 SAARSNLEI---LRTLSGSREQ-SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLD 349 + R NLE+ +R+ S + +LL +D+ T G RL + D T R Sbjct: 289 AMTRRNLELTEPIRSDSAHHQSPTLLSELDHCKTAMGSRLLRHWLHHACRDQTVARARHA 348 Query: 350 SINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFL 409 +I + + ++ ++ L S PD+ R +SR+ + P+D+A +R G+R + L +L Sbjct: 349 TITALL-DACVMEGLRNTLASVPDIERIVSRIALYSARPRDLAALRSGLRQ-LPGLRSYL 406 Query: 410 KNDLPEE---LRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRS 466 + E+ L G + + +P S L ++++ RDGG + G LDE RS Sbjct: 407 DQCVMEDGTSLLGEIHRNLAIPPSCLDLLEHAIAEEPSGMVRDGGVIAQGFSPELDELRS 466 Query: 467 LRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHR 526 L + + + + L+ + T I NL++++N G++IEVT S + D + R Sbjct: 467 LAENAGQFLVELETRERTRTGISNLRVEYNRVHGFYIEVTQGQISKVPDD------YRRR 520 Query: 527 QTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAII 586 QT+ N R+ T EL E+++ +A AL +E +E L + + L +Q A + Sbjct: 521 QTLKNTERYITPELKAFEDKVLSARERALALEKTLYEQLLRDLTDYIVPLQRIAQNTARL 580 Query: 587 DISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPND 646 D+ ALA A++Q + +P + + GRH ++E +++ FIAN+CDLS Sbjct: 581 DVLSALAFHAEKQGWTKPELAEEPVIHIVQGRHAVIENRIER-----FIANNCDLS---- 631 Query: 647 KNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNL 706 K L+TGPNMGGKST++RQ ALIV++A +GS+VPA A IG +D++F+R+G+AD+L Sbjct: 632 -GKKKFLLITGPNMGGKSTYMRQTALIVLLAYLGSFVPADQAVIGPIDRIFTRIGAADDL 690 Query: 707 ASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRG 766 A GRSTFMVEM E A+ILN AT QS V++DEIGRGT+T DGL++AWA +L E+N+ Sbjct: 691 AGGRSTFMVEMTEAAAILNGATEQSLVLMDEIGRGTSTFDGLALAWAIASHLIESNQSFT 750 Query: 767 LLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPN 826 L ATH+ ELT L ++ N L + + I+FLH V PG A SYG+QV KLAG+PN Sbjct: 751 LFATHYFELTQLPETYPTAANVHLSAVEHKDSIVFLHSVEPGPASQSYGLQVAKLAGVPN 810 Query: 827 TVISRAYDILKTFEKLY--HHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDE 884 VI A L E + NQ ++ Y P + +N V I L+ D Sbjct: 811 PVIRIARKHLAELESHFIPDRNQLNLFSYAPPEPENDMRNTPDSPYLPLVRSIDELDPDS 870 Query: 885 MSPLTALKTLYAVK 898 +SP AL LY +K Sbjct: 871 LSPRDALDALYRLK 884 >gi|194334404|ref|YP_002016264.1| DNA mismatch repair protein MutS [Prosthecochloris aestuarii DSM 271] gi|194312222|gb|ACF46617.1| DNA mismatch repair protein MutS [Prosthecochloris aestuarii DSM 271] Length = 875 Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust. Identities = 282/822 (34%), Positives = 456/822 (55%), Gaps = 26/822 (3%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMMRQY+E+K PD L+ +R+GDFYE F+DDA S L I LT+R DI M Sbjct: 13 ATPMMRQYLEVKERYPDFLLLFRVGDFYESFYDDARQVSEALNIVLTRRSNGAASDIAMA 72 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G P H+ YI KL++ G ++A+C+Q+E P EAK +VRR + +VTPG D++ Sbjct: 73 GFPHHSCEGYIAKLVRKGFKVAVCDQVEDPSEAK-----GIVRREITDIVTPGVTYSDKI 127 Query: 145 LSPTDSNYLMAVARIR----TEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 L +NYL A++ ++ IA+ID++T F+++ D+L + + P E++ S Sbjct: 128 LDDRHNNYLSAISFLKKGRQQRAGIAFIDVTTAEFRVADVEVDQLKDMLQSVQPAEVLLS 187 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTA 259 + +A+ G + Q + F +E + ++ ++ FG + + A Sbjct: 188 SRNREYADEIKKILPPGVLVSLQDDWMFSQENAEQILLRHFKTHSLKGFGIEHAYAARIA 247 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTI 318 A + Y+++TQ I D + +D R NLEI+ ++ GS SLL I Sbjct: 248 AGVILHYLEETQQNKLQYITRIATVDSHEYMTLDLQTRRNLEIIFSMHDGSMNGSLLHVI 307 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D + G R + PL I R D+++ ++P + + +++ S D+ R+L Sbjct: 308 DRTRCPMGARQLRRWLLHPLKQMAPILQRHDAVDELSRHPDVRRELGEVIGSIHDLERAL 367 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 SR+ R P+++ ++ + + LF +++ L +L LP+ L + + Sbjct: 368 SRIATLRSMPREVRMLGSALEQLPRLQGLFDQSE-SSRLCFLSRRLSMLPE-LARRIDEA 425 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + D RDGG++R+G +A LD RSL +K + +Q + T I LK+++N Sbjct: 426 IDPDAGATMRDGGYIREGYNAELDSLRSLSSTAKERLLEIQQQERAATTISTLKVQYNKV 485 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IEV+ +++ + E K QT+ N R+T L + E I A +L +E Sbjct: 486 FGYYIEVSRANSDKVPAYYEKK------QTLVNAERYTIPALKEYEETILTAEEKSLSLE 539 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 F L AI ++ + ++ IA +D + A+ A E YC+P++ +++GR Sbjct: 540 QRLFRELCQAIASEAGQIQTNAESIAELDCLCSFAVNADEYRYCKPVMVEEPVLRIQNGR 599 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP++E+ + +P+++NDC ++ ++TGPNM GKS++LRQ LI ++AQ Sbjct: 600 HPVLERIV--DVDEPYVSNDCLFD-----ERQRMLIVTGPNMAGKSSYLRQIGLISLLAQ 652 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA A IG+VD++F+RVG++DNLASG STFMVEM E ASILN AT S ++LDE+ Sbjct: 653 VGSFVPADEAEIGLVDRIFTRVGASDNLASGESTFMVEMNEAASILNNATRSSLILLDEV 712 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DG+SIAWA EY+H R L ATH+HEL +L + L N V+++ + Sbjct: 713 GRGTSTYDGMSIAWAMSEYIHSAIGARTLFATHYHELAELEERLDGVFNYNATVTETADR 772 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 ++FL K++ G +D+SYGI+V ++AG+P+ VI RA +IL E Sbjct: 773 VVFLRKIVRGASDNSYGIEVARMAGMPSGVIQRAKEILSGME 814 >gi|291530258|emb|CBK95843.1| DNA mismatch repair protein MutS [Eubacterium siraeum 70/3] Length = 870 Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust. Identities = 322/909 (35%), Positives = 492/909 (54%), Gaps = 87/909 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+EIK+ D ++FYR+GDFYE+F +DA++AS+ L +TLT R PMCG Sbjct: 14 TPMMQQYVEIKANYKDYILFYRLGDFYEMFNEDAMVASKELELTLTSRA-----GTPMCG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI+KLI G ++AICEQ P +K LV R++VRLV+ GT+ E +L Sbjct: 69 VPHHSAEGYIKKLIDKGFKVAICEQTTDPALSK-----GLVERDIVRLVSAGTVIEASML 123 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIM----RIDPREIIFS 200 +NY+ + + + DISTG + + +N + DI+ + P E++F+ Sbjct: 124 EDGSNNYISCIYVGENGTGMVFADISTGEVHAVEKANSKKTDEDIIAQFSQYTPVELLFN 183 Query: 201 EKELSHAE-YKSLFETLGNVAVAQPNVFFDHSISESRIADYYNIT-----TVDTFGSFSQ 254 + L+ + Y + G + Q D S I D IT T D G + Sbjct: 184 AEFLNRKQAYTFIRNRYGKCSAEQ---LSDEDFS---IDDVSEITAQFGGTADEIGLAGK 237 Query: 255 VEK-TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQ 312 A A + Y+ K Q + + A R NLE+ T+ SG ++ Sbjct: 238 DNALRALCALLRYLYKAQRSGAKRFVKLNVHSSGEFMQLGLATRRNLELTSTMRSGEKKG 297 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 SLL +D + T G R + I PLTD+ I R D++ I N + I+ L Sbjct: 298 SLLWVLDKTDTSMGRRKLRQCIEQPLTDTAAIIRRHDAVEALINNSAALYDIKTDLAKVY 357 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE 432 D+ R ++R+ KD+ + R IL LK+DL + +L +SL+ Sbjct: 358 DLERLMTRIIYKAANAKDVKALGATCR----ILPQ-LKSDLSQ-------ISTQLTRSLD 405 Query: 433 KTLSSM----------LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 K +S + ++D+ P +DGG++++G + LD R++ K ++A ++ + Sbjct: 406 KKISPLDDIADLVERAIADEPPALMKDGGYIKNGFNEELDRLRNITGGGKDLLAQIEQQE 465 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T IKNL++ +N GY+IEV+ + S++ DR++ +QT++N R+ T EL Sbjct: 466 KEATGIKNLRVGYNRVFGYYIEVSKGNVSMVP------DRYVRKQTLTNGERYITDELKK 519 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 +EN I A + L +E F + I ++ + + ++ +A +D+ + A+++ E NYC Sbjct: 520 IENEILGANDKILALEAAIFAEVREFIAQRLDLIQQTAESVAALDVLCSYAVVSIENNYC 579 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 RP++ N + +KDGRHP+VEK + + F ND L D S +L ++TGPNM G Sbjct: 580 RPMMANDSVIEIKDGRHPVVEKMVNE---ILFTPNDVYL----DVKSNRLMIITGPNMSG 632 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KSTF+RQ A+IV+MAQ+G +VPASYA +G+VD++F+RVG++D+L++G+STFMVEM E A+ Sbjct: 633 KSTFMRQVAVIVLMAQIGCFVPASYARLGVVDRIFTRVGASDDLSAGQSTFMVEMTEVAT 692 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYL-HETNRCRGLLATHFHELTDLSKS 781 ILN+AT S VILDEIGRGT+T DG+SIA A EY+ + C+ L ATH+HEL L Sbjct: 693 ILNEATRNSLVILDEIGRGTSTYDGVSIAKAVAEYISSKAIGCKTLFATHYHELISLENE 752 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 L N +++V S E I FLHK++ G D SYGI+V +LAGLP V RA +L EK Sbjct: 753 LDGVRNYSVKVKRSGEDIKFLHKIVEGGTDDSYGIEVARLAGLPKKVTDRAKQLLAELEK 812 Query: 842 LYHHNQKDMRLYYPEIQTKESKNNL----------SKNDKLFVEKIKCLNLDEMSPLTAL 891 P+IQ + + + + +IK L+LD+M+P A Sbjct: 813 A------------PKIQRELELRAEEESESQIDFEATGRQNVIAEIKNLDLDDMTPREAY 860 Query: 892 KTLYAVKAW 900 L +KA Sbjct: 861 AKLEELKAM 869 >gi|296188728|ref|ZP_06857115.1| DNA mismatch repair protein MutS [Clostridium carboxidivorans P7] gi|296046655|gb|EFG86102.1| DNA mismatch repair protein MutS [Clostridium carboxidivorans P7] Length = 903 Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust. Identities = 295/822 (35%), Positives = 482/822 (58%), Gaps = 31/822 (3%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY++ K D ++F+R+GDFYE+FF+DA +AS+ L + LT R L PMCG Sbjct: 4 TPMMQQYLDAKEGCKDCILFFRLGDFYEMFFEDAEIASKELELVLTGRDCGLENRAPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H AN YI +LI G+++AICEQ+E P +AK +V+R +++++TPGT T+ L Sbjct: 64 IPYHAANSYISRLINKGYKVAICEQLEDPSQAK-----GIVKRGIIKVITPGTYTDASFL 118 Query: 146 SPTDSNYLMAV--ARIRTEWAIAWIDISTGIFKISTSNHD--RLISDIMRIDPREIIFSE 201 +NY+M++ + + A+ + D+STG F + + + L+ +I + P+E++ + Sbjct: 119 EENKNNYIMSLYLEKEKNMCALCFADVSTGEFNCTDMDFNLATLLDEISKYSPKEVLIQD 178 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 L K + E + + FF + S+ ++ ++I + +S+ + Sbjct: 179 N-LDEKIQKDIKERFSSSFTSLSEEFFILN-SKELLSKQFSIFKEE---DYSETLIKCSN 233 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 + YI +TQ + I ++ + ID +R NLE+ TL S++ SLL +D Sbjct: 234 GLLKYIVETQKTSLSHINCFNYYNVVDYMAIDINSRRNLELTETLRDKSKKGSLLWVMDR 293 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGR + I PL +S+ I RLDS+ + N + +++ LK D+ R + + Sbjct: 294 TNTAMGGRQLRKWIEQPLINSSSIKLRLDSVEELLNNLSVHEDLKEALKEIYDIERLVGK 353 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + K++ ++ G I I+ L N L KL +L Q + + L + Sbjct: 354 ISSKNVNAKELISLK-GSIKKIPIIKKMLSNFETTLLHNMGVKLDEL-QDIYEILDKAII 411 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D ++G +++G + +DE + + K IASL+ E T IK+LK+ +N G Sbjct: 412 DTPSISLKEGNLIKEGYNGEVDELKLAKAHGKDWIASLENSEREITGIKSLKVGYNKVFG 471 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IEVT S+ S + + R+I +QT++N R+ T L ++E++I A + +E + Sbjct: 472 YYIEVTKSNLSSI-----PEGRYIRKQTLANAERYITPSLKEMEDKILGAEEKLINLEYD 526 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F + + I +Q + + +++I+ ID +LA +A E NYC+P I + + +++GRHP Sbjct: 527 IFIDVRDKIEKQVDRMQETAKIISEIDCLSSLATIALENNYCKPEISSKEDICIEEGRHP 586 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + SS FI+ND ++ +++ L ++TGPNM GKST++RQ ALIV+MAQ+G Sbjct: 587 VVEKMI---SSGSFISNDTVINTSDEQ----LLIITGPNMAGKSTYMRQVALIVLMAQIG 639 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA A I + DK+F+R+G++D+LA+G+STFMVEM E ++IL ATN+S ++LDE+GR Sbjct: 640 SFVPAKKAVISVCDKIFTRIGASDDLAAGKSTFMVEMWEVSNILKNATNKSLILLDEVGR 699 Query: 741 GTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GT+T DGLSIAW+ IEY+ + +C+ L ATH+HELT L ++ N ++ V + Sbjct: 700 GTSTYDGLSIAWSVIEYICSSKKLKCKTLFATHYHELTKLESIIEGVKNYSVSVKEIGSD 759 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 I+FL K+I G AD SYGI+V KLAGLP+ VI RA +IL + E Sbjct: 760 IVFLRKIIRGGADQSYGIEVAKLAGLPDKVIERAKEILNSIE 801 >gi|323978657|gb|EGB73739.1| DNA mismatch repair protein MutS [Escherichia coli TW10509] Length = 853 Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust. Identities = 311/889 (34%), Positives = 488/889 (54%), Gaps = 51/889 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R L+RL + P+D+A +R + + L L+N ++ EK+ + + L Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ-LPELRAQLENVASAPVQALREKMGEFAE-LRD 405 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + D P RDGG + G + LDE R+L D + + L+++ + T + LK+ Sbjct: 406 LLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERKRTGLDTLKV 465 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + Sbjct: 466 GFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKEYEDKVLTSKGK 519 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY P + Sbjct: 520 ALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFIDKPGIR 579 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 580 ITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTALI 630 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V Sbjct: 631 ALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLV 690 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L Sbjct: 691 LMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH---NQKDM 850 + + I F+H V G A SYG+ V LAG+P VI RA L+ E + + Q D Sbjct: 751 EHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESISPNAAATQVD- 809 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 T+ S + + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 810 -------GTQMSLLSAPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|70728591|ref|YP_258340.1| DNA mismatch repair protein MutS [Pseudomonas fluorescens Pf-5] gi|90109853|sp|Q4KHE3|MUTS_PSEF5 RecName: Full=DNA mismatch repair protein mutS gi|68342890|gb|AAY90496.1| DNA mismatch repair protein MutS [Pseudomonas fluorescens Pf-5] Length = 859 Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust. Identities = 296/823 (35%), Positives = 454/823 (55%), Gaps = 33/823 (4%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L S TPMM+QY +K+ +PD L+FYRMGDFYE+F++DA A++ L ITLT RG+ G+ Sbjct: 7 DLSSHTPMMQQYWRLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQA 66 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCG+P H A Y+ KL+K+G + ICEQ+ P +K V R VVR++TPGT++ Sbjct: 67 IPMCGIPYHAAEGYLAKLVKLGESVVICEQVGDPAT-----SKGPVERQVVRIITPGTVS 121 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIF 199 ++ LL N + AV + +A +DI++G F + + L++++ RI+P E++ Sbjct: 122 DEALLDERRDNLIAAVLGDERLFGLAVLDITSGNFSVLEIKGWENLLAELERINPVELLI 181 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + ++ V + + F+ + + ++ + FG + Sbjct: 182 PD------DWPQGLPAEKRRGVRRRAPWDFERDSAHKSLCQQFSTQDLKGFGCETLTLAI 235 Query: 259 AAAAA-ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA +SY K+TQ P + E + T+ +D A+R NLE+ L+G R+ +L Sbjct: 236 GAAGCLLSYAKETQRTALPHLRSLRHERLDDTVVLDGASRRNLELDTNLAGGRDNTLQSV 295 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D T G RL + PL D + R SI + +Q LK D+ R Sbjct: 296 VDRCQTAMGSRLLTRWLNRPLRDLKVLEARQSSITCLLDG-YRFERLQPQLKEIGDIERI 354 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 L+R+ + P+D+A +RD + + + L + L P+ L L+ Sbjct: 355 LARIGLRNARPRDLARLRDAL-AALPELQEAMTELEATHLNQLAATTSTYPE-LAALLAK 412 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + D+ P RDGG L+ G DA LDE +SL + + + + L+ + T + NLK+ +N Sbjct: 413 AIIDNPPAVIRDGGVLKTGYDAELDELQSLSENAGQFLIDLEAREKARTGLANLKVGYNR 472 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GYFIE+ S A D +I RQT+ RF T EL + E++ +A + AL Sbjct: 473 IHGYFIELPSKQAEQAPAD------YIRRQTLKGAERFITPELKEFEDKALSAKSRALAR 526 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E ++ L +I L + + +A +D+ LA A + P + + G Sbjct: 527 EKMLYDALLETLISHLPPLQDTAGALAELDVLSNLAERALNLDLNCPRFVSEPCMRITQG 586 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ L + PF+AND L D N+ ++ ++TGPNMGGKST++RQ ALIV++A Sbjct: 587 RHPVVEQVL----TTPFVANDLSL----DDNT-RMLVITGPNMGGKSTYMRQTALIVLLA 637 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT +S V++DE Sbjct: 638 HIGSFVPAASCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSLVLMDE 697 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 +GRGT+T DGLS+AWA E L R L ATH+ ELT L +S N L ++ NE Sbjct: 698 VGRGTSTFDGLSLAWAAAERLAHL-RAYTLFATHYFELTVLPESEPLVANVHLNATEHNE 756 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 I+FLH V+PG A SYG+ V +LAG+P+ VI+RA + L E Sbjct: 757 RIVFLHHVLPGPASQSYGLAVAQLAGVPSAVITRAREHLSRLE 799 >gi|183600214|ref|ZP_02961707.1| hypothetical protein PROSTU_03757 [Providencia stuartii ATCC 25827] gi|188022510|gb|EDU60550.1| hypothetical protein PROSTU_03757 [Providencia stuartii ATCC 25827] Length = 854 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 315/891 (35%), Positives = 488/891 (54%), Gaps = 57/891 (6%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +N S TPMM+QY+++K+ +PD L+FYRMGDFYELFFDDA AS+ L I+LTKRG+ G+ Sbjct: 5 QNFDSHTPMMQQYLKLKAQHPDILLFYRMGDFYELFFDDAKKASQLLDISLTKRGQTAGQ 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H A +Y+ KL+++G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGVPHHAAENYLAKLVQLGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREII 198 T++ LL+ N L +V + + A +DI++G F IS + + L +++ R P E++ Sbjct: 120 TDEALLNERQDNLLASVWQEPQGYGFATLDITSGRFIISEFDDEESLQAELQRTRPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + E S A L E + +P F+ ++ ++ + + FG VE Sbjct: 180 YPEDFASMA----LIENCKGLR-RRPLWEFELETAKQQLGLQFGTKDLIGFG----VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y+K TQ P I E + +D+A R NLEI + LSG + + Sbjct: 231 SRALRAAGCLLQYVKDTQRTALPHIRSIIMEKQTDNVILDAATRRNLEITQNLSGGTDNT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D +T G R+ + +PL + R +I + + +Q +L+ D Sbjct: 291 LASILDLCVTPMGSRMLKRWLHTPLRHVQTLTNRQQAIAALQECGFEL--LQPLLRQIGD 348 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R L+RL + P+D+A +R I + +++ E L+ +++ + + L+ Sbjct: 349 LERVLARLALRSARPRDLARMRHAFEQYQEIHQILNQSN-SEYLQNLQKRINQFDE-LQD 406 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + D P RDGG + G ++ LDE R+L D + + L+++ E+ I LK+ Sbjct: 407 LLQRAIIDAPPVLVRDGGVIAPGYNSELDEWRALADGATDYLDRLEIREKEKLGIDTLKV 466 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GYFI+V+ + ++ ++ RQT+ N R+ EL + E+++ + + Sbjct: 467 GYNAVHGYFIQVSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSKSK 520 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL IE ++ L + ++ L +++ +A +D+ LA A+ Y P + N Sbjct: 521 ALAIEKALYDELFDMLLPHLADLQISAEALAELDVLNNLAERAETLGYACPQLTNKPGIH 580 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + +GRHP+VE+ L S+PFI+N LS +L ++TGPNMGGKST++RQ ALI Sbjct: 581 ITEGRHPVVEQVL----SEPFISNPLSLSPQR-----RLLIITGPNMGGKSTYMRQTALI 631 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 ++A +GS+VPA+ A IG VD++F+RVG++D+LASGRSTFMVEM ETA+IL+ AT QS V Sbjct: 632 TLLAYIGSFVPATKAVIGPVDRIFTRVGASDDLASGRSTFMVEMTETANILHNATEQSLV 691 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + L+ N L Sbjct: 692 LMDEIGRGTSTYDGLSLAWACAENLVNRIKSMTLFATHYFELTTLPEKLEGAVNIHLDAM 751 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL------YHHNQ 847 + + I F+H V G A SYG+ V LAG+P VI RA LK E + H + Sbjct: 752 EHGDTIAFMHNVQEGAASKSYGLAVASLAGVPKDVIKRAKQKLKELEIISNNTNASHVDS 811 Query: 848 KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + PE E LS ++ ++ D+++P AL LY +K Sbjct: 812 AQLSFLVPE----EPSPVLS--------ALESIDPDKLTPRQALDWLYRLK 850 >gi|253997025|ref|YP_003049089.1| DNA mismatch repair protein MutS [Methylotenera mobilis JLW8] gi|253983704|gb|ACT48562.1| DNA mismatch repair protein MutS [Methylotenera mobilis JLW8] Length = 874 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 313/888 (35%), Positives = 478/888 (53%), Gaps = 43/888 (4%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 NL+S TPMMRQY+ +K+ +PD L+FYRMGDFYELFF+DA A+R LGITLT RG G+ Sbjct: 16 NLESHTPMMRQYLGLKAQHPDMLLFYRMGDFYELFFEDAEKAARLLGITLTHRGSSNGQP 75 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 I M GVP H A Y+ KL K+G +AICEQ+ P +K V R V R++TPGTLT Sbjct: 76 IKMAGVPYHAAEQYLAKLAKMGEAVAICEQVGDPAT-----SKGPVAREVARILTPGTLT 130 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 + LL + N L+++ + +A +++++G F +S L ++ RI P E++ + Sbjct: 131 DAALLDESRDNQLLSIFQADGVVGLARLNLASGSFILSEIAVGLLAQELERIAPSEMLLA 190 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 + HA S VA + + + FD + + + +N ++ FG Sbjct: 191 DDFQHHALNAS------KVAKRRLSAWQFDFDSAFATLTKQFNTYDMNGFGCADMRPAIC 244 Query: 260 AAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA A+ Y+K TQ P I E + L +D+A R NLEI TL G +L + Sbjct: 245 AAGALLDYVKHTQRTTLPHINALSVETTSAYLQLDAATRRNLEIDLTLRGEASPTLYSLL 304 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 + + T G RL + PL D + R ++I +Q +N ++ L S D+ R Sbjct: 305 NTTQTAMGARLLRHWLHHPLQDRNLVMQRHEAIADLMQTNQFLN-LRHTLNSVADIERIT 363 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL------PQSLE 432 +R+ + P+D+ SG+ + L + + + L+ L P ++ Sbjct: 364 ARVALKTARPRDL--------SGLAVSLQQLPLLQAQLAQQSANLLQTLVLSLAPPAAVL 415 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 LS+ + + R+GG + DG DA LDE R+++ + S + E T I NLK Sbjct: 416 GLLSTAIKAEPSVVLREGGVIADGYDAELDELRAIQTNHGEFLLSFEAAEKERTGITNLK 475 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 +++N+ G++IE++ + A + + RQT+ N+ RF T EL E+++ +A + Sbjct: 476 VEYNSVHGFYIEMSRTQAE------SAPAEYRRRQTLKNVERFITPELKAFEDKVLSAND 529 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 AL E +E + + + +L + +A +D+ A NY P+ Sbjct: 530 RALAREKMLYEQVLAELGQYISALQTNAGAVATLDVLCCFTERAISLNYVAPMFTTEAGI 589 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 + +GRHP+VE+ + Q S +PFIAND LS +L L+TGPNMGGKSTF+RQ AL Sbjct: 590 EIVNGRHPVVEQ-ISQASGQPFIANDVVLSPYR-----QLLLITGPNMGGKSTFMRQTAL 643 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 IV++A G YVPA+ IG +D++ +R+G++D+LA GRSTFMVEM ETA+IL+ A+++S Sbjct: 644 IVLLAYCGCYVPATSVKIGEIDRIMTRIGASDDLAGGRSTFMVEMTETANILHNASDKSL 703 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 V+LDEIGRGT+T DGLS+AWA + L E NR L ATH+ ELT + K N L Sbjct: 704 VLLDEIGRGTSTFDGLSLAWAVAKQLLEKNRAYTLFATHYFELTRIVDEFKYAANVHLDA 763 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 + I+F+HKV G + SYG+QV +LAG+P VIS A L E L +D Sbjct: 764 VEHGNSIVFMHKVEEGAVNQSYGLQVAQLAGIPKPVISAAKRKLAQLE-LNQVASQDAST 822 Query: 853 YYPEIQT-KESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 P++ ++ + +++ L +D+++P AL LY +KA Sbjct: 823 -VPQVDMFMHTEPAAEAPLHPVLAELESLQVDDLTPKQALDLLYHLKA 869 >gi|225872379|ref|YP_002753834.1| DNA mismatch repair protein MutS [Acidobacterium capsulatum ATCC 51196] gi|225791956|gb|ACO32046.1| DNA mismatch repair protein MutS [Acidobacterium capsulatum ATCC 51196] Length = 893 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 307/899 (34%), Positives = 497/899 (55%), Gaps = 57/899 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+MRQY K +PD+L+F+RMGDFYELF++DA +A+R L ITLT R + + PMCG Sbjct: 14 TPLMRQYQAAKREHPDALLFFRMGDFYELFYEDAKIAARELQITLTARDRE--RTQPMCG 71 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H + Y+ +L++ G+RIAIC+Q+E P KK +VRR V R++TPGT D Sbjct: 72 VPYHAVDGYLSRLLRKGYRIAICDQMEDPKLTKK-----IVRREVTRVLTPGTAI-DTAF 125 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLIS----DIMRIDPREIIFSE 201 S +NYL A+ R+ +A++D+ST F+ + ++ ++ +I P E+IF+ Sbjct: 126 SAGQNNYLAALHRVGDAVGLAYLDLSTADFRATEFRGPEALAMALDELGKIAPSELIFAA 185 Query: 202 KELSHAEYKSLFETLGNVA-----VAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 E + + E VA A + F + ++D FG Sbjct: 186 SE----GWANAPEAPAEVAQVKTCSALEDWIFAAEYGLPLLERQLGAQSLDGFGLGGHTA 241 Query: 257 KTAAAAAI-SYIKKTQM--------VNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS 307 AA AI YI+ TQ V+ + + ER + L +D + NLE++ L Sbjct: 242 AATAAGAIVHYIRATQKSGPEDQGPVHVDALYFYERNE---HLHLDQVSVRNLELVEPLF 298 Query: 308 GSRE--QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQ 365 E +L +D +T G RL I PL D+ ++ R +++ Q+ + ++ Sbjct: 299 RDTEGDPTLFGALDECVTPMGKRLLRASILRPLMDAARLEARYAAVDAARQSLLGREAVR 358 Query: 366 KILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEK 423 + + D+ R L+++ + P+D+ + + + + L+ ++ +++ Sbjct: 359 RAMDGILDLERLLAKISLESAGPRDVLALGHSLGRLPELQSSLLQMGASWWKQTGEGLDR 418 Query: 424 LKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 L+ L ++EKT+ + + P DGG + +G DA LDE R++ + IA+++ + Sbjct: 419 LEDLHSAIEKTIVA----EPPLTLADGGAIAEGVDAELDELRTISHSGRSSIAAIEERER 474 Query: 484 EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDL 543 + T I +LK++ N+ GY+IEVT ++ + + D E K QT+ N RFTT EL D Sbjct: 475 QRTGIPSLKVRFNSVFGYYIEVTKANLAHVPADYERK------QTLVNAERFTTPELKDY 528 Query: 544 ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCR 603 E ++ A + ++ IE F L ++ + + S +IA ID+ + A LA + Y R Sbjct: 529 EIKVLTAQDRSVEIEKRIFAELRRLVLSHAARIRRVSVMIAEIDLLASFAHLASLRGYTR 588 Query: 604 PIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDL----SCPNDKNSGKLWLLTGPN 659 P++++ + RHP++E +++ + F+ ND + + P ++ L L+TGPN Sbjct: 589 PLLESEPVLELIGARHPVIECLMERAGTTRFVPNDLYVDATEATPEAASAPHLLLITGPN 648 Query: 660 MGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIE 719 MGGKST+LRQ AL+VI+AQMG +VPA G+VD++++R+G++DN+A GRSTFMVEM E Sbjct: 649 MGGKSTYLRQAALLVILAQMGCFVPAERMRFGLVDRVYTRIGASDNVARGRSTFMVEMTE 708 Query: 720 TASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLS 779 TA+ILN AT +S ++LDE+GRGTAT DGL++AWAT+E+LH R L ATH+HELT L+ Sbjct: 709 TATILNTATVRSLILLDEMGRGTATFDGLALAWATLEFLHAEVGARTLFATHYHELTMLA 768 Query: 780 KSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF 839 + L R N + V +S +GI+FLH++ PG A SYGI+V +LAGLP VI RA +LK Sbjct: 769 EQLPRLGNLRVAVKESPKGIVFLHRMEPGAASKSYGIEVARLAGLPPRVIQRARQVLKQH 828 Query: 840 EKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E+ N + E + + ++++ +++ ++PL AL L+ +K Sbjct: 829 ERSERGNVE------AETAPALQMTMFTPLSQQILDRLTETDVNTLTPLDALNLLHELK 881 >gi|325286832|ref|YP_004262622.1| DNA mismatch repair protein mutS [Cellulophaga lytica DSM 7489] gi|324322286|gb|ADY29751.1| DNA mismatch repair protein mutS [Cellulophaga lytica DSM 7489] Length = 875 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 306/885 (34%), Positives = 494/885 (55%), Gaps = 45/885 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M+QY IK+ PD+++ +R+GDFYE F DDA+ AS+ LGI T R G+ + G Sbjct: 13 TPLMQQYNAIKTKYPDAMLLFRVGDFYETFGDDAVKASKILGIICTHRNNG-GEKTELAG 71 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H+ N Y+ KL+K G R+AIC+Q+E P + KK +V+R V LVTPG D +L Sbjct: 72 FPHHSLNTYLPKLVKAGQRVAICDQLEDPKQTKK-----IVKRGVTELVTPGVALNDDIL 126 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 S +N+L AV R + +A++DISTG F S +++ + P E++ S+ Sbjct: 127 SAKTNNFLCAVHFGRKKIGVAFLDISTGEFLTSEGTEEQIDKLLQNFAPNEVLVSKTH-- 184 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK--TAAAAA 263 ++ F T + + + F ++ + ++N T+ FG + +E+ A+ A Sbjct: 185 KKDFLKAFGTEFHTFFIE-DWIFQEDYAQETLTKHFNTATLKGFG-VAHLEQGIMASGAV 242 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 + Y+ +TQ I +R + +++D NLE+ + + +LL ID +I+ Sbjct: 243 LHYLSETQHHKLQHINTLQRIAEEEYIWMDRFTIKNLELYHSYN-PNAVTLLDVIDKTIS 301 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 GGR+ +A PL + KI R I + N +++ +Q+ +K D+ R +S++ Sbjct: 302 PMGGRMLKRWLALPLKNVEKIKRRHQVIEYLQANDTILHKLQQSIKQMGDLERLISKVAT 361 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFL--KND----LPEELRGAVEKLKKLPQSLEKTLSS 437 + PK++ +++ + + + + L KND + ++L G L + Sbjct: 362 AKISPKEVVQLKNSLEAILPVKQLTSSSKNDAVKLIGDQLHGC--------DMLRAKIKE 413 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 M+S+D P G + +G A LDE R L K + + + E T I +LKI NN Sbjct: 414 MISEDAPVNMLKGETIANGYSAELDELRGLAFSGKDYLNKMLERETERTGITSLKIASNN 473 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IEV ++ KD + + +I +QT+ N R+ T EL + E++I A ++ Sbjct: 474 VFGYYIEVRNTH-----KD-KVPEEWIRKQTLVNAERYITEELKEYESKILGAEERIQVL 527 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E E F L + E + + +Q+IA +D LA + Y P+I+NST+ + +G Sbjct: 528 EQELFSKLVVWMQEYIAPVQHNAQLIAQLDCLCGFTQLATDNKYTAPVINNSTDLEIVNG 587 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP++EK L + +IAND L ++ ++ ++TGPNM GKS LRQ ALIV++A Sbjct: 588 RHPVIEKQLP--VGETYIANDVTL----NREEQQIIMITGPNMSGKSAILRQTALIVLLA 641 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 QMGS+VPA A IG VDK+F+RVG++DN++ G STFMVEM ETASILN + +S V+LDE Sbjct: 642 QMGSFVPAEAAKIGYVDKIFTRVGASDNISMGESTFMVEMNETASILNNLSERSLVLLDE 701 Query: 738 IGRGTATLDGLSIAWATIEYLHE-TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 IGRGT+T DG+SIAWA EYLH+ + + L ATH+HEL +++ + R N + V + Sbjct: 702 IGRGTSTYDGISIAWAISEYLHQHPTQAKTLFATHYHELNEMTATFSRIKNYNVSVKELK 761 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 + ++FL K+ PG ++HS+GI V K+AG+P VIS+A ILK EK H+ +++ + Sbjct: 762 DNVLFLRKLTPGGSEHSFGIHVAKMAGMPQQVISKANKILKKLEK--SHSSEELTTKLTD 819 Query: 857 IQTKESKNNLSKNDKLFV---EKIKCLNLDEMSPLTALKTLYAVK 898 Q + + + +D L + E+I L+++ ++P+ AL L +K Sbjct: 820 AQNEMQLSFFNMDDPLLLELKEEIIDLDINTLTPVEALMKLNEIK 864 >gi|239623741|ref|ZP_04666772.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521772|gb|EEQ61638.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 888 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 319/905 (35%), Positives = 494/905 (54%), Gaps = 67/905 (7%) Query: 33 IEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTAN 92 +E K PD ++FYR+GDFYE+FFDDAL S+ L ITLT + L + PMCGVP H + Sbjct: 1 METKKEYPDCILFYRLGDFYEMFFDDALTVSKELEITLTGKDCGLAERAPMCGVPYHALD 60 Query: 93 HYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNY 152 Y+ +L++ G+++AI EQ+E P AK LV+R V+R+VTPGT+T Q L T +NY Sbjct: 61 AYLYRLVQKGYKVAIAEQVEDPKLAK-----GLVKREVIRVVTPGTITSVQALDETKNNY 115 Query: 153 LMAVAR---IRTE---------WAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREIIF 199 LM + RT + IA DI+TG F ++ + DR L +I + P EII Sbjct: 116 LMGIVYEVGQRTNQTGKGRDGIYGIATADITTGDFMVTEVDSDRELFDEINKFSPSEIIC 175 Query: 200 SEK-ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 + +S + L + A + FF + +++ + ++ G + Sbjct: 176 NNAFYMSGVDIDGLKNRYNVIISALDSHFFGEESCRKVLREHFRVGSLSGLGLTDYGTGI 235 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLK 316 +A A + Y+ +TQ I + ID++ R NLE++ T+ +++ +LL Sbjct: 236 ISAGAVMQYMYETQKSTLEHITTITPYSTGQFMVIDTSTRRNLELVETMREKQKRGTLLW 295 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D + T G RL I PL +I R ++ N I I + L D+ R Sbjct: 296 VLDKTKTAMGARLLRTYIEQPLIHKEEIVKRQTAVEELNMNYISREEICEYLNPIYDLER 355 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 + R+ P+D+ ++ + +I + L E LRG +++ L Q + + Sbjct: 356 LIGRISYKTANPRDLIAFKNSLEMLPHIKQI-LGEFSGELLRGLAQEMDPL-QDIYGLID 413 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + +D P R+GG ++DG D R + + K +A L+ + E+T IK LKIK N Sbjct: 414 QAILEDPPVTVREGGIIKDGYHEEADRLRQAKTEGKDWLAELEAREKEKTGIKTLKIKFN 473 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+ EVT+S KD + D F+ +QT++N RFTT EL LE+ I A + Sbjct: 474 KVFGYYFEVTNSF-----KD-QVPDYFVRKQTLTNAERFTTDELKHLEDIIMGAEEKLVS 527 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E + F + ++I Q + ++ IA +D+ +L+++A +NY +P+++ +K+ Sbjct: 528 LEYDLFCQVRDSIAAQVVRIQKTAKAIAGVDVFCSLSVVATRRNYVKPMMNEKGVIQIKN 587 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE+ ++ F+AND L N KN +L ++TGPNM GKST++RQ ALIV+M Sbjct: 588 GRHPVVEQMMRDDL---FVANDTFLD--NGKN--RLSVITGPNMAGKSTYMRQVALIVLM 640 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+GS+VPA A IGI D++F+RVG++D+LASG+STFMVEM E A+IL AT S ++LD Sbjct: 641 AQLGSFVPAQEADIGICDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATRNSLLVLD 700 Query: 737 EIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 EIGRGT+T DGLSIAWA IE++ T + L ATH+HELT+L ++ N + V + Sbjct: 701 EIGRGTSTFDGLSIAWAVIEHISSTKLLGAKTLFATHYHELTELEGTIAGVKNYCIAVKE 760 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 + I+FL K++ G AD SYGIQV KLAG+P++VI+RA +I + + D+ Sbjct: 761 QGDDIVFLRKIVRGGADKSYGIQVAKLAGVPDSVIARAKEIAEEL------SDADITARA 814 Query: 855 PEIQTKESKNNLSKN---------------------DKLFVEKIKCLNLDEMSPLTALKT 893 EI E +N++++ D V ++ L L M+P+ AL T Sbjct: 815 KEI--AEISSNITQHKAVPKPDEVDMQQLTFFDTVKDDDIVRELDGLELSTMTPIDALNT 872 Query: 894 LYAVK 898 LY ++ Sbjct: 873 LYRLQ 877 >gi|317153256|ref|YP_004121304.1| DNA mismatch repair protein MutS [Desulfovibrio aespoeensis Aspo-2] gi|316943507|gb|ADU62558.1| DNA mismatch repair protein MutS [Desulfovibrio aespoeensis Aspo-2] Length = 888 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 301/827 (36%), Positives = 441/827 (53%), Gaps = 36/827 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM+ QY+ K NP L+F+RMGDF+ELFF+DA +R + ITLT R IPMCG Sbjct: 7 TPMLEQYLRFKEENPGCLLFFRMGDFFELFFEDAQTVARAVQITLTSRNPKDDNPIPMCG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H Y+ +L+ G+RIAIC+QIE P EAK LV+R V R++TPGT+ ED L Sbjct: 67 VPHHAVEPYLTQLLDKGYRIAICDQIEDPKEAK-----GLVKRAVTRVLTPGTVVEDSNL 121 Query: 146 SPTDSNYL--MAVARIRTEWAIAWIDISTGIFK-ISTSNHDRLISDIMRIDPREIIFSEK 202 ++NYL M R +AW+D STG + + + L I++I PRE++ + Sbjct: 122 KSKENNYLGVMFWDSDRNAGGVAWVDFSTGQWSGLHSRREPELWQWIVKIGPRELLLPQG 181 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 +Y L + V P +FD +++ RIA+ ++D+ + E A Sbjct: 182 RKVPPQYAELEAQVTGVP---PASYFDPAMAARRIAEVQGTASLDSLDLGDKPELVRACG 238 Query: 263 AI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDY 320 A+ +Y++ TQ +G ++ L +D NLEI R L G + +L + +D Sbjct: 239 ALLTYLEHTQKCPLTHLGEFRPLNLGKHLLLDEVTERNLEIFRRLDGRPGKGTLWRVLDR 298 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 ++T GGRL R+ P D I D + F L +++ L D+ R +R Sbjct: 299 TMTPMGGRLLEARLRQPWRDIVPIEKTQDCVVFLHDRDQLRADLRQALDGVHDLERLSTR 358 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 + +GR P+D +R + + L L D +++ + K + + L L S Sbjct: 359 VVLGRATPRDFVALRQSLPMLPKVRALLAGLDLDTAPDVKRLLLKWDDM-EDLAGLLESS 417 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 D P DGG R G D LDE L + + + +L + + + I LK+ +N Sbjct: 418 FVDSPPPLITDGGLFRKGFDPRLDELIELNEHGEDKLRTLHQQELDASSIPKLKLGYNKV 477 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+ EV+ + + D FI RQT+ R+ T L ++E RI +A++ +E Sbjct: 478 FGYYFEVSKAYKG------QVPDHFIRRQTLVGSERYITPALKEMEERIISASDERKALE 531 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 F L + + +A +D LA A+ + RP + + + ++ GR Sbjct: 532 HSLFLTLREQVASARSRFLFMADAVAALDYWQGLAEAARINEWHRPELHDGLDIDIEAGR 591 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE + + + +I ND L DK ++ L+TGPNM GKST LRQ A+ VIMAQ Sbjct: 592 HPVVEDAMGRAT---YIPND--LRMDRDK---RILLITGPNMAGKSTVLRQVAIFVIMAQ 643 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA A +G+ D++FSRVG++DNLA G STFMVEM ETA IL QAT +S VILDEI Sbjct: 644 IGSFVPARRARLGLADRVFSRVGASDNLAQGHSTFMVEMTETARILRQATQRSLVILDEI 703 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRG----LLATHFHELTDLSKSLKRFHNATLQVSD 794 GRGT+T DGLS+AWA +E L R RG L ATH+HELT L ++ N + V + Sbjct: 704 GRGTSTYDGLSLAWAVVEEL--ATRARGGIRTLFATHYHELTGLEGKIEGLRNLNIAVKE 761 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 I+FL +++PG AD SYGI+V KLAG+P V+ RA +IL E+ Sbjct: 762 WKGDIVFLRRLVPGPADRSYGIEVAKLAGVPKPVVDRAREILANLEE 808 >gi|146312852|ref|YP_001177926.1| DNA mismatch repair protein MutS [Enterobacter sp. 638] gi|172045969|sp|A4WDU5|MUTS_ENT38 RecName: Full=DNA mismatch repair protein mutS gi|145319728|gb|ABP61875.1| DNA mismatch repair protein MutS [Enterobacter sp. 638] Length = 853 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 306/893 (34%), Positives = 482/893 (53%), Gaps = 61/893 (6%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 ENL + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENLTAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPHHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGYGYAALDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E A + + ++ I +R T D G F VE Sbjct: 180 YAEDFAEMA-------LIDGRRGLRRRPLWEFEIDTARQQLNLQFGTRDLIG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y+K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYVKDTQRTTLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGVENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + +R +I +Q +L+ D Sbjct: 291 LAAVLDSTVTPMGSRMLKRWLHMPVRDTNVLVSRQQTIGALQDR---FTELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINI-LNLFLKNDLP-EELRGAVEKLKKLPQSL 431 + R L+RL + P+D+A +R + + L N P ++LR + + +L + L Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQLPTLRAQLAEVNSTPVQKLRETMGEFTELCELL 407 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 E+ + + P RDGG + G LDE R+L D + + L+++ E + L Sbjct: 408 ERAVV----EAPPVLVRDGGVIAPGYHEELDEWRALADGATDYLDKLEIRERERLGLDTL 463 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 K+ +N GY+I+++ + + ++ RQT+ N R+ EL + E+++ + Sbjct: 464 KVGYNAIHGYYIQISRGQSH------HAPIHYVRRQTLKNAERYIIPELKEYEDKVLTSK 517 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 AL +E + +E L + ++ L ++ +A +D+ I LA A NY P + Sbjct: 518 GKALALEKQLYEELFDMLMPHLADLQASASALAELDVLINLAERADTLNYACPTFIDKPG 577 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 + +GRHP+VE+ L++ PFIAN +LS ++ ++TGPNMGGKST++RQ A Sbjct: 578 IRITEGRHPVVEQVLRE----PFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTA 628 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LI ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S Sbjct: 629 LIALLAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENS 688 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L Sbjct: 689 LVLMDEIGRGTSTYDGLSLAWACAESLANKIKALTLFATHYFELTQLPEKMEGVANVHLD 748 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH------ 845 + + I F+H V G A SYG+ V LAG+P VI RA L+ E L + Sbjct: 749 ALEHGDTIAFMHTVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESLSPNAAATQV 808 Query: 846 NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + M L P +T + +E ++ L+ D ++P AL+ +Y +K Sbjct: 809 DGSQMSLLMPAEETSPA-----------MEALENLDPDSLTPRQALEWIYRLK 850 >gi|313886368|ref|ZP_07820092.1| DNA mismatch repair protein MutS [Porphyromonas asaccharolytica PR426713P-I] gi|312924183|gb|EFR34968.1| DNA mismatch repair protein MutS [Porphyromonas asaccharolytica PR426713P-I] Length = 879 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 313/891 (35%), Positives = 491/891 (55%), Gaps = 44/891 (4%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 + TPMMRQY++ K +PD+++ +R+GDFYE F DDA+ AS+ LGITLTKR + + + Sbjct: 12 AETPMMRQYLQFKKKHPDAILLFRVGDFYETFSDDAIEASKILGITLTKRANGAAQHVEL 71 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G P H + Y+ KL++ G R+AIC+Q+E P K NK LV+R + +VTPG +T D Sbjct: 72 AGFPHHALDTYLPKLVRAGKRVAICDQLEDP----KLTNK-LVKRGITEIVTPGVVTTDN 126 Query: 144 LLSPTDSNYLMAV---ARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 +L +N+L AV A+ + +A +D+STG F S L + +P+EI+ Sbjct: 127 VLQSKQNNFLAAVYPQAKGENRYGLALLDLSTGEFYASECTDQVLAKLVSGYNPKEILIE 186 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTA 259 K H + L + G+++ + F S + R+ ++ ++ FG + + TA Sbjct: 187 RKHRDH--LQRLLQPEGHLS-DYDDWIFSESNNRERLLQHFGTLSLKGFGIDTLPLAITA 243 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A A + Y+ T+ I R D Q + ID +LE L T + +L + +D Sbjct: 244 AGAVLHYLDMTKHTEIGHITRIVRIDEQRHVRIDGFTAHSLE-LTTPMNAGGTTLRQILD 302 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 ++T G RL + IA PL + I R + + NP L + +K D+ R + Sbjct: 303 QTVTPMGARLLDQWIAFPLKELQAIQQRQSIVANLVDNPQLRTQLTDQMKEIGDLQRLVG 362 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ +GR P++ V+R G+ + L D EE A+ L L + ++ L Sbjct: 363 RVAMGRITPRE--VVRLGLSIALIAPIRQLALDEGEETLTALCSLLDPCAQLCQQITFQL 420 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + + P G + +G LD+ R L K+ + L + E T I +LKI NN Sbjct: 421 NPEAPQQIGKGETIAEGFCEELDQLRRLLKSGKQYLDDLLARETEHTGISSLKIGFNNVF 480 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY++EV ++ + + +I +QT+ + R+ T EL + E +I A + L +E Sbjct: 481 GYYLEVRNTYKE------QVPEEWIRKQTLVSAERYITQELKEYEEKILGAEDRILALEQ 534 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F L + + + L +Q++A +D+ +LA +AK +YCRP ++ + + DGRH Sbjct: 535 ELFAKLIGTLQQFANQLLQDAQILAQLDVLASLAAVAKSYDYCRPTLNEGYDLEIIDGRH 594 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P++E+TL + +P+I ND LS P D ++ ++TGPNM GKS LRQ ALIVIMAQM Sbjct: 595 PVIERTLP--AGQPYIPNDVRLS-PID---CQIMIITGPNMSGKSALLRQTALIVIMAQM 648 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPA+ A IGIVD +++RVG++DN+A G STFMVEM E ASILN T +S ++ DE+G Sbjct: 649 GSFVPATSATIGIVDSVYTRVGASDNIAVGESTFMVEMQEAASILNNLTPRSLILFDELG 708 Query: 740 RGTATLDGLSIAWATIEYLHET--NRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 RGT+T DG+SIAWA +EYLH T R + L ATH+HEL +L+ L+R + + + Sbjct: 709 RGTSTFDGVSIAWAIVEYLHSTTQGRAKTLFATHYHELNELADHLERVQCYNVSAREIDG 768 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 ++FL K++PG + HS+GIQV KLAG+P +++RA ++L+ E + + D P+ Sbjct: 769 EMLFLRKLVPGGSAHSFGIQVAKLAGMPTWIVARAGEVLQHLEA--YRTESDQA---PDS 823 Query: 858 QTKESKNNLSKNDKLFV----------EKIKCLNLDEMSPLTALKTLYAVK 898 T + + +F KI L+++ ++PL ALK L A+K Sbjct: 824 ATPSTSQSGGMQMSIFQLDDPVLTAVRTKINELDINNLTPLDALKQLDALK 874 >gi|159900591|ref|YP_001546838.1| DNA mismatch repair protein MutS [Herpetosiphon aurantiacus ATCC 23779] gi|159893630|gb|ABX06710.1| DNA mismatch repair protein MutS [Herpetosiphon aurantiacus ATCC 23779] Length = 928 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 317/942 (33%), Positives = 502/942 (53%), Gaps = 88/942 (9%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S M +QY+ IK D ++F+R+GDFYE F DDA L + L ITLT RG ++ PM Sbjct: 2 SKMTMWQQYLSIKQKYADVILFFRLGDFYETFGDDAKLIAEVLDITLTVRGLSSDENTPM 61 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H A++YI++L+ G+R+AICEQ++ + +K+L +R VVR+VTPGTLTE Sbjct: 62 AGVPYHAADNYIEQLVSRGYRVAICEQMDEMV------HKTLQKREVVRIVTPGTLTEPT 115 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-----------------SNHDRLI 186 +L ++YL A+ R +A+ D++TG F + + L+ Sbjct: 116 MLQAERNSYLAAILVDRGNVGLAYADLTTGEFCATELRGNEALKQLEGELARLGAAELLV 175 Query: 187 SDIMRIDPREIIFSEKELSH-------AEYKSLFE----------------TLGNVAVAQ 223 SD + P + ++K+L+ AE + L GNV Sbjct: 176 SDAPELRPAGMEIAKKQLAQDLAPMRKAERERLLPHERTAKKVEGNNESTWVQGNV-TQW 234 Query: 224 PNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA-ISYIKKTQMVNKPTIGYPE 282 PN +D + + + + ++D FG ++ T AA A I Y+ +TQ + + Sbjct: 235 PNWHWDARTARDALLNQFKSQSLDGFGLGNKALATRAAGALIQYLHETQRDSVAQVRSLR 294 Query: 283 REDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDST 342 D +F+D R NLE+ G R+ SL+ +D + T G RL + I+ PL + Sbjct: 295 VYDTTRFMFLDPQTRRNLELTEGAGGQRKGSLIAVLDQTRTPMGARLLRQWISQPLIELG 354 Query: 343 KINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGI 402 + R +++ F++ ++ ++ + K D+ R+++R+ G P+D+ +R+ +R Sbjct: 355 PLTERQQAVSCFVEETLVRGELRALFKGVGDIERTINRVVQGIATPRDLVRLREALRLTP 414 Query: 403 NILNLF----LKNDLPEELRGAVEKL-KKLPQS--------LEKTLSSMLSDDLPTF--- 446 +IL+ L++ P E + + L P S + + L ++DD P Sbjct: 415 DILSQIERTGLRSTSPTEAAPSDDDLFDDEPTSNQIDACADICELLEQAIADDPPALLGT 474 Query: 447 ----KRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 + D +R G A +D + R I L+ K + T IK LK+ +N GY+ Sbjct: 475 WDNARSDENVIRKGHAAEIDAIVEATRDAARWINELEAKEQQRTGIKTLKVSYNKVFGYY 534 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IEVT +S + D +I +QT+ N R+ T EL + E+ I NA+ + E ++F Sbjct: 535 IEVTKASG-----ETRIPDDYIRKQTLVNAERYITPELKEYESLILNASEALNEKERQAF 589 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 ++ + L + ++ IA D+ LA +A Q + RP + F+++ GRHP+V Sbjct: 590 RLILRHLANAGNRLLDLARAIAEFDVYSTLAEVAVRQRFVRPTLRLDDVFVIQGGRHPVV 649 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 E L ++PF ND + ++ +LTGPNM GKSTFLRQ ALI +MAQ+GS+ Sbjct: 650 EHNL----NEPFTPNDAHFDADH-----QIIVLTGPNMSGKSTFLRQVALIGLMAQIGSF 700 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA YA IG++D++F+R+G+ D++A+G+STFMVEMIETA+IL+ + +S +ILDEIGRGT Sbjct: 701 VPADYAEIGLLDRIFTRIGAQDDIATGQSTFMVEMIETANILHNGSPRSLIILDEIGRGT 760 Query: 743 ATLDGLSIAWATIEYLHETNRCRG--LLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 +T DGLSIA A +EY+H R R L ATH+HELT+L+ L R HN TL V++ + ++ Sbjct: 761 STYDGLSIARAVVEYIHNQPRLRAKTLFATHYHELTELANILPRVHNWTLAVAEEGDHVV 820 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD--MRLYYPEIQ 858 FL KVI G AD SYGI V ++AGLP VI RA ++L E Q+ MR Sbjct: 821 FLRKVIEGAADRSYGIHVAQMAGLPPAVIKRATEVLSELEGKGDREQRREAMRRMNAAGS 880 Query: 859 TKESKNNL--SKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + +L S VE ++ +++ +++P+ AL LY ++ Sbjct: 881 SAVPQMSLFASNEPNPAVELLREMDVTQLTPIEALTKLYELQ 922 >gi|189030767|sp|A5FJ63|MUTS_FLAJO RecName: Full=DNA mismatch repair protein mutS Length = 868 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 306/892 (34%), Positives = 498/892 (55%), Gaps = 33/892 (3%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 +E + TP+M+QY EIK PD+ + +R+GDFYE F +DA+ AS+ LGITLTKRG Sbjct: 4 KEKVAKETPLMKQYNEIKRKYPDACLLFRVGDFYETFGEDAIRASKILGITLTKRGAGSD 63 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + + G P H+ N Y+ KL+K G R+AIC+Q+E P + K++V+R V LVTPG Sbjct: 64 TETALAGFPHHSINTYLPKLVKAGLRVAICDQLEDP-----KMTKTIVKRGVTELVTPGV 118 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREII 198 D++L +N+L +V I+++D+STG F + N + + + +P E++ Sbjct: 119 SLNDEVLQSKTNNFLASVCFANKNIGISFLDVSTGEFLTAQGNAEYIDKLLQNFNPSEVL 178 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + +E+K F + + ++ + E+ + ++ ++ FG E Sbjct: 179 VPKN--CKSEFKDAFGEDFHSFYLEDWIYKEDYALET-LTKHFQTNSLKGFGVEELKEGI 235 Query: 259 AAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 +A AI Y+ +TQ I +R + +++D NLE+ + + +LL Sbjct: 236 ISAGAILYYLSETQHNRVQHITAIQRIAEDAYVWMDRFTIRNLELYHSYN-PNAVTLLDV 294 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 ID +++ GGRL +A PL D+ KI R +++ NP +++ IQ +K D+ R Sbjct: 295 IDKTLSPMGGRLLKRWLALPLKDTNKIKGRHAVVSYLKSNPEILHNIQYQIKQISDLERL 354 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 +S++ G+ P++I +++ + + I I L L++ P+E + L + + + Sbjct: 355 ISKIAAGKVSPREIVYLKESLDAIIPIKTLALES--PQEAVKVIGDSLHSCDLLREKIKT 412 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 L+ D P G + G + LDE R++ K + ++ + +E T I +LKI NN Sbjct: 413 TLNQDAPVAISKGNAIATGVNEELDELRAISTSGKEFLEGIERRESERTGISSLKISFNN 472 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IEV ++ KD + + +I +QT+ N R+ T EL + E +I A I Sbjct: 473 VFGYYIEVRNTH-----KD-KVPEEWIRKQTLVNAERYITEELKEYETKILGAEEKIHKI 526 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E E FE L N I + + + ++A +D + +A E Y P ID++ +K+G Sbjct: 527 ESELFEQLVNWIATYIKPVQMNAYLVAQLDCLCSFTQMAVENQYVCPEIDDTFELDIKNG 586 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP++EK L + P+IAND L D+ ++ ++TGPNM GKS LRQ ALIV++A Sbjct: 587 RHPVIEKQLPVGT--PYIANDVFL----DREKQQIIMITGPNMSGKSAILRQTALIVLLA 640 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 QMGS+VPA +GIVDK+F+RVG++DN++ G STFMVEM ETASILN +++S V+LDE Sbjct: 641 QMGSFVPADSVRMGIVDKIFTRVGASDNISMGESTFMVEMNETASILNNISDRSLVLLDE 700 Query: 738 IGRGTATLDGLSIAWATIEYLHE-TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 IGRGT+T DG+SIAWA E+LHE ++ + L ATH+HEL ++++SL R N + V + Sbjct: 701 IGRGTSTYDGISIAWAIAEFLHEHPSKAKTLFATHYHELNEMTESLPRIQNYNVAVKELK 760 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 + ++F+ K++ G + HS+GI V K+AG+P VIS+A +LK EK N L + Sbjct: 761 DTVLFVRKLVKGGSAHSFGIHVAKMAGMPQLVISKAQKLLKKLEK----NHSSDALNGIK 816 Query: 857 IQTKESKNNLSKNDKLFVEKIK----CLNLDEMSPLTALKTLYAVKAWTLEK 904 E + + D +E+IK L+++ ++P+ AL L +K ++K Sbjct: 817 SANDEMQMSFFNLDDPLLEEIKEEILSLDINAITPVEALMKLNEIKRMLVKK 868 >gi|317049277|ref|YP_004116925.1| DNA mismatch repair protein MutS [Pantoea sp. At-9b] gi|316950894|gb|ADU70369.1| DNA mismatch repair protein MutS [Pantoea sp. At-9b] Length = 847 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 310/892 (34%), Positives = 482/892 (54%), Gaps = 63/892 (7%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 + + TPMM+QY+ +K+ +PD L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 2 DFSAHTPMMQQYLRLKADHPDILLFYRMGDFYELFYDDAKRASQLLEISLTKRGASAGEP 61 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM GVP H Y+ KL+++G +AICEQI P +K V R VVR+VTPGT++ Sbjct: 62 IPMAGVPYHAVEGYLAKLVQLGESVAICEQIGDPAL-----SKGPVERKVVRIVTPGTIS 116 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIF 199 ++ LL N L A+ + + + A +DIS+G F++S + + + +++ R +P E+++ Sbjct: 117 DEALLQERQDNLLAAIFQSQRGFGYATLDISSGRFRLSEPGDQETMAAELQRTNPAELLY 176 Query: 200 SEKELSHA--------EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG- 250 E + A + L+E + A Q N+ F ++ FG Sbjct: 177 PEDLQAMALIDQRRGLRRRPLWEYEIDTARQQLNLQF-------------GTRDLNGFGV 223 Query: 251 SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR 310 + + AA + Y+K TQ + P I E Q ++ +D+A R NLEI + L+G Sbjct: 224 EQAHLALRAAGCLLQYVKDTQRTSLPHIRSLSMERQQDSVIMDAATRRNLEITQNLAGGT 283 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 + +L +D ++T G R+ + PL D I R ++I + +Q +L+ Sbjct: 284 DNTLAAVLDKTVTPMGSRMLKRWLHMPLRDVDTIARRQEAIAELQAHS---EELQPVLRQ 340 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEKLKKLP 428 D+ R L+RL + P+D+A +R + + L + P+ +LR + + +L Sbjct: 341 IGDLERILARLALRTARPRDLARMRHAFQQLPELNALLQAVNAPQLTQLRSQMGEFSELR 400 Query: 429 QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 + LE + + P RDGG + G +A LDE R+L D + + L+++ E+ + Sbjct: 401 ELLENAII----ESPPVLVRDGGVIAPGYNAELDEWRALADGASDYLDRLEIREREKLGL 456 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 LK+ N GY+I+V+ + ++ ++ RQT+ N R+ EL + E+++ Sbjct: 457 DTLKVGFNAIHGYYIQVSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKVL 510 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 + AL +E ++ L + ++ E+L ++ +A +D+ LA A NYCRP++ Sbjct: 511 TSKGKALALEKGLYDELFDRLLPHLEALQLSAAALAELDVLSNLAERAWTLNYCRPVLQE 570 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 + GRHP+VE+ LK+ PFIAN LS ++ ++TGPNMGGKST++R Sbjct: 571 KAGIRITGGRHPVVEQVLKE----PFIANPLSLSTQR-----RMLIITGPNMGGKSTYMR 621 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q ALI +MA +GS+VPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT Sbjct: 622 QAALIALMAWIGSFVPAEETVIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNAT 681 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA 788 S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N Sbjct: 682 EHSLVLMDEIGRGTSTYDGLSLAWACAESLANRIKAMTLFATHYFELTTLPEKMEGVVNV 741 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 L + + I F+H V G A SYG+ V LAG+P VI RA LK E L Sbjct: 742 HLDAVEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARHKLKELETLSGSTAA 801 Query: 849 DMRLYYPEIQTKESKN--NLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 T E L VE ++ L+ D ++P AL+ +Y +K Sbjct: 802 S---------TVEGSQLPLLVAETSPAVEALEALDPDTLTPRQALEWIYRLK 844 >gi|255011979|ref|ZP_05284105.1| DNA mismatch repair protein MutS [Bacteroides fragilis 3_1_12] gi|313149814|ref|ZP_07812007.1| DNA mismatch repair protein mutS [Bacteroides fragilis 3_1_12] gi|313138581|gb|EFR55941.1| DNA mismatch repair protein mutS [Bacteroides fragilis 3_1_12] Length = 871 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 306/886 (34%), Positives = 492/886 (55%), Gaps = 41/886 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+Q++++K+ +PD+++ +R GDFYE + DA++A+ LGITLTKR GK I M G Sbjct: 8 TPMMKQFLDLKAKHPDAVMLFRCGDFYETYSTDAIIAAEILGITLTKRANGKGKTIEMAG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KLI+ G R+AIC+Q+E P KK LV+R + LVTPG D +L Sbjct: 68 FPHHALDTYLPKLIRAGKRVAICDQLEDPKTTKK-----LVKRGITELVTPGVSINDNVL 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF--SEKE 203 + ++N+L AV ++ IA++DISTG F + D + + P+E++F ++ Sbjct: 123 NYKENNFLAAVHFGKSACGIAFLDISTGEFLTAEGPFDYVDKLLNNFAPKEVLFERGKRG 182 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + + S F T + F S S ++ ++ + FG A+ A Sbjct: 183 MFEGNFGSKFFTF-----ELDDWVFTESSSREKLLKHFETKNLKGFGVEHLKNGIVASGA 237 Query: 264 I-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 I Y+ T+ I R + + +D +LE++ +++ SLL ID +I Sbjct: 238 ILQYLDMTEHTQVGHITSLARIEEDKYVRLDKFTVRSLELIGSMNDGG-SSLLNVIDKTI 296 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 + G RL + PL D IN RL+ + +F + P I+ L D+ R +S++ Sbjct: 297 SPMGARLLKRWMVFPLKDEKPINDRLNVVEYFFRKPDFRELIEDELHRIGDLERIISKVA 356 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 +GR P+++ ++ +++ I + D P L E+L L S+ + +++D Sbjct: 357 VGRVSPREVVQLKVALQAIEPIKEACRQADNPS-LNRIGEQLN-LCISIRDRIEKEINND 414 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P GG ++DG + LDE R + K + +Q + +E T I +LKI +N+ GY+ Sbjct: 415 PPLLINKGGVIKDGVNPELDELRQIAYSGKDYLLQIQQRESELTGIPSLKIAYNSVFGYY 474 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IEV + + KD + +I +QT+ N R+ T EL + E +I A + L++E + Sbjct: 475 IEVRN-----VHKD-KVPQEWIRKQTLVNAERYITQELKEYEEKILGAEDKILVLETRLY 528 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 L A+ E ++ + IA ID ++ A +AKE NY RP+I++S ++ GRHP++ Sbjct: 529 TELVQALSEFIPAIQINANQIARIDCLLSFANVAKENNYIRPVIEDSDVLDIRQGRHPVI 588 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 EK L + +IAND L D + ++ ++TGPNM GKS LRQ ALI ++AQ+GS+ Sbjct: 589 EKQLP--IGEKYIANDVML----DNATQQIIIITGPNMAGKSALLRQTALITLLAQIGSF 642 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA AHIG+VDK+F+RVG++DN++ G STFMVEM E + ILN +++S V+ DE+GRGT Sbjct: 643 VPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEASDILNNVSSRSLVLFDELGRGT 702 Query: 743 ATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 +T DG+SIAWA +EY+HE + R L ATH+HEL ++ KS KR N + V + + +I Sbjct: 703 STYDGISIAWAIVEYIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEVDNKVI 762 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 FL K+ G ++HS+GI V K+AG+P +++ RA +ILK E N++ P + Sbjct: 763 FLRKLERGGSEHSFGIHVAKMAGMPKSIVKRANEILKQLES---DNRQQGISGKPLAEVS 819 Query: 861 ESKNNLSKNDKLFVEKIKC------LNLD--EMSPLTALKTLYAVK 898 E++ + + + + C LNLD ++P+ AL L +K Sbjct: 820 ENRGGMQLSFFQLDDPVLCQIRDEILNLDVNNLTPIEALNKLNDIK 865 >gi|300811157|ref|ZP_07091669.1| DNA mismatch repair protein MutS [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497861|gb|EFK32871.1| DNA mismatch repair protein MutS [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 856 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 300/879 (34%), Positives = 493/879 (56%), Gaps = 47/879 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K++TPMM QY +IK PD+ +FYR+GDFYEL+ DDA+ S+ L +TLT R IP Sbjct: 4 KATTPMMEQYYQIKDQYPDAFLFYRVGDFYELYEDDAIKGSQILELTLTHRSNKSENPIP 63 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP + Y+ L++ G+++AICEQ+E P +AK +V+R +++LVTPGT Sbjct: 64 MAGVPHMAVDSYVNTLVEKGYKVAICEQLEDPKKAK-----GMVKRGIIQLVTPGTKMAQ 118 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSE 201 ++NYL +V + +A+ D+STG IF ++ ++++++ + RE++ + Sbjct: 119 GPDDSQENNYLTSVVEKAGGYGLAYSDLSTGEIFATHVKHYAEVVNELLSLRTREVVLAG 178 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 K LS ++ L + N+ V++P E Y D+ +EK A Sbjct: 179 K-LSASDRDRLQK--ANITVSEPAELE----GEHAEISYVQQKLTDS------MEKAAVR 225 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDY 320 + Y+ TQ + + E +I L + + + NLE+ ++ + R+Q SL +D Sbjct: 226 QLVVYLLATQKRSLAHLQVAESFEIGQYLQMANTVQRNLELTQSATTGRKQGSLFWVLDK 285 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGRL + ++ PL +I R + + + I LK D+ R R Sbjct: 286 TTTAMGGRLLKQWLSRPLLSLDRIKQRQQMVQALLDDYFTRENIVDSLKGVYDLERLSGR 345 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL--PQS-LEKTLSS 437 + G P+++ + + + I+ ++ P+ +EK + PQS L +++++ Sbjct: 346 VAFGNVNPRELLQLAKSLEATKPIIQALAESGNPD-----LEKYGQGIDPQSELAESITN 400 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 L D P +DGG +R G LD+ R + K+ +A ++++ + T I NLKI +N Sbjct: 401 CLVDQPPISAKDGGIIRAGVSEDLDKYREAMNGGKKWLAQMEMEERQRTGIDNLKIGYNR 460 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GYFI+V+ + + + +DR+ +QT++N R+ T EL + EN I A + + + Sbjct: 461 VFGYFIQVSKGNVAKV-----PQDRYTRKQTLTNAERYITPELKEHENLILEAESRSTDL 515 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E E F L A+ +L + +A +D+ +A A A+E+NYCRP + VK+G Sbjct: 516 EYELFSQLREAVKAHIPALQELGRQLAALDVFVAFAQDAEEKNYCRPSFSSKNEIAVKNG 575 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE L S +I ND + D+++ ++L+TGPNM GKST++RQ ALI IMA Sbjct: 576 RHPVVEAVLPAGS---YIPNDLVM----DEDTS-IYLITGPNMSGKSTYMRQLALIAIMA 627 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+GS+VPA A + + D++F+R+G+AD+L SG+STFMVEM E L A+++S V+ DE Sbjct: 628 QIGSFVPADSAKLPVFDQVFTRIGAADDLYSGKSTFMVEMSEANEALQHASSRSLVLFDE 687 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGTAT DG+++A A I+YLH+ + L ATH+HELT+L ++L N + ++ N Sbjct: 688 IGRGTATYDGMALAGAIIKYLHDKVGAKTLFATHYHELTELDETLPHLKNIHVGATEENG 747 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE----KLYHHNQKDMRLY 853 +IFLHK++PG AD SYGI V KLAGLP V+ A +LK E + + +++ + L+ Sbjct: 748 QLIFLHKILPGPADQSYGIHVAKLAGLPRAVLREASSMLKRLEAEGAREINPSRQQLDLF 807 Query: 854 YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALK 892 P ++ E +N L + +++I +NL+E +PL ++ Sbjct: 808 SP-VEVVE-ENPLKAEQEELLDEISQVNLNEKTPLEVMQ 844 >gi|117619909|ref|YP_858166.1| DNA mismatch repair protein MutS [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|189030438|sp|A0KPG5|MUTS_AERHH RecName: Full=DNA mismatch repair protein mutS gi|117561316|gb|ABK38264.1| DNA mismatch repair protein MutS [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 860 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 302/885 (34%), Positives = 479/885 (54%), Gaps = 49/885 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 NL + TPMM+QY+ +K+ NP+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG+ G Sbjct: 15 NLSAHTPMMQQYLTLKAENPEILLFYRMGDFYELFYDDARKASQLLDISLTKRGQSAGSP 74 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM GVP H Y+ KL+++G AICEQ+ P +K V R V+R++TPGT++ Sbjct: 75 IPMAGVPYHAIEGYLAKLVQLGESAAICEQVGDPAT-----SKGPVERKVIRIITPGTVS 129 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIF 199 ++ LLS N + AV + +DI +G F I+ + L++++ R +P E+++ Sbjct: 130 DEALLSERQDNLIAAVYHDGRRFGYGTMDIGSGRFFINQFEKEETLLAELQRTNPAELLY 189 Query: 200 SEKE--LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVE 256 E L H E + +P F+ + + + + FG S+ Sbjct: 190 PESFTFLHHVEGRRGLRR-------RPEWEFELGTARKLLCQQFGTQDLVGFGVEQSETA 242 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 AA + Y+K TQ P I E + +D+A R NLE+ + L+G + +L Sbjct: 243 LCAAGCLMQYVKDTQRTALPHIRSVRLEQPDHAVIMDAATRRNLELTQNLAGGHDNTLSA 302 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D + T G RL I P+ D + R +I I+ L + + +L+ DV R Sbjct: 303 VLDCTATPMGSRLLKRWIHQPIRDQVILKGRQSTIKELIEQN-LYDELGGLLRQVGDVER 361 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 L+RL + P+D+ +R + + L L E ++ E+ P+ L+ L Sbjct: 362 VLARLALRSARPRDLTRLRQAF-AQLPELQRLLAESEHEAVQQLRERASTFPELLD-LLE 419 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + + P RDGG +RDG + LDE R L + + +A ++ + T I LK+ +N Sbjct: 420 RAVMEVPPVLIRDGGVIRDGFNQELDELRDLANGATASLARIEERERLLTGINTLKVGYN 479 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 G++IEV+ +++ ++ +I RQT+ N R+ EL E+++ A AL Sbjct: 480 KVHGFYIEVSRANSHLVPA------HYIRRQTLKNNERYIIDELKKYEDKVLTAQAQALA 533 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E +E L +A++ L ++ +A +D+ LA A+ +Y P + + +++ Sbjct: 534 LEKRLYEELLDALLPHLGDLQESAAALAELDVLANLAERAETLDYRCPTLIDEDQILIEA 593 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE+ + + PFIAN +L + S ++ ++TGPNMGGKST++RQ ALIV++ Sbjct: 594 GRHPVVEQVM----TDPFIANPINL-----QRSRRMLIITGPNMGGKSTYMRQTALIVLL 644 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A +G++VPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+ILN AT +S V++D Sbjct: 645 AHIGAFVPADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILNNATARSLVLMD 704 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DGLS+AWA E L L ATH+ ELT L + ++ N L + Sbjct: 705 EIGRGTSTYDGLSLAWACAEQLASKIGAYTLFATHYFELTRLPELMEGLANVHLDAVEHG 764 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 + I F+H V G A SYG+QV LAG+P +VI +A H ++ P Sbjct: 765 DTIAFMHAVQEGAASRSYGLQVAALAGVPKSVIQQA-----------RHKLHELESATP- 812 Query: 857 IQTKESKN---NLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + ES+ ++ V++++ + DE++P AL LY +K Sbjct: 813 VAAGESRPAPVAMAPQSHPVVDELEAVRPDELTPRQALDLLYRLK 857 >gi|116514520|ref|YP_813426.1| DNA mismatch repair protein MutS [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122274748|sp|Q048Y4|MUTS_LACDB RecName: Full=DNA mismatch repair protein mutS gi|116093835|gb|ABJ58988.1| DNA mismatch repair protein MutS [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 856 Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust. Identities = 301/879 (34%), Positives = 493/879 (56%), Gaps = 47/879 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K++TPMM QY +IK PD+ +FYR+GDFYEL+ DDA+ S+ L +TLT R IP Sbjct: 4 KATTPMMEQYYQIKDQYPDAFLFYRVGDFYELYEDDAIKGSQILELTLTHRSNKSENPIP 63 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP + Y+ L++ G+++AICEQ+E P +AK +V+R +++LVTPGT Sbjct: 64 MAGVPHMAVDSYVNTLVEKGYKVAICEQLEDPKKAK-----GMVKRGIIQLVTPGTKMAQ 118 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSE 201 +SNYL +V + +A+ D+STG IF ++ ++++++ + RE++F+ Sbjct: 119 GPDDSQESNYLTSVVEKAGGYGLAYSDLSTGEIFVTHVKHYAEVVNELLSLRTREVVFA- 177 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 LS ++ L + N+ V++P E Y D+ +EK A Sbjct: 178 GNLSASDRDRLQK--ANITVSEPAELE----GEHAEISYVQQKLTDS------MEKAAVR 225 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDY 320 + Y+ TQ + + E +I L + + + NLE+ ++ + R+Q SL +D Sbjct: 226 QLVVYLLATQKRSLAHLQVAESFEIGQYLQMANTVQRNLELTQSATTGRKQGSLFWVLDK 285 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGRL + ++ PL +I R + + + I LK D+ R R Sbjct: 286 TTTAMGGRLLKQWLSRPLLSLDRIKQRQQMVQALLDDYFTRENIVDSLKGVYDLERLSGR 345 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL--PQS-LEKTLSS 437 + G P+++ + + + I+ +++ P+ +EK + PQS L +++++ Sbjct: 346 VAFGNVNPRELLQLAKSLEATKLIIQTLVESGNPD-----LEKYGQGIDPQSELAESITN 400 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 L D P +DGG +R G LD+ R + K+ +A ++++ + T I NLKI +N Sbjct: 401 CLVDQPPISAKDGGIIRAGVSEDLDKYREAMNGGKKWLAQMEMEERQRTGIDNLKIGYNR 460 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GYFI+V+ + + + +DR+ +QT++N R+ T EL + EN I A + + + Sbjct: 461 VFGYFIQVSKGNVAKV-----PQDRYTRKQTLTNAERYITPELKEHENLILEAESRSTDL 515 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E E F L A+ L + +A +D+ +A A A+E+NYCRP + VK+G Sbjct: 516 EYELFSQLREAVKAHIPDLQELGRQLAALDVFVAFAQDAEEKNYCRPSFSSKNEIAVKNG 575 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE L S +I ND + D+++ ++L+TGPNM GKST++RQ ALI IMA Sbjct: 576 RHPVVEAVLPAGS---YIPNDLVM----DEDT-SIYLITGPNMSGKSTYMRQLALIAIMA 627 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+GS+VPA A + + D++F+R+G+AD+L SG+STFMVEM E L A+++S V+ DE Sbjct: 628 QIGSFVPADSAKLPVFDQIFTRIGAADDLYSGKSTFMVEMSEANEALQHASSRSLVLFDE 687 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGTAT DG+++A A I+YLH+ + L ATH+HELT+L ++L N + ++ N Sbjct: 688 IGRGTATYDGMALAGAIIKYLHDKVGAKTLFATHYHELTELDETLLHLKNIHVGATEENG 747 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE----KLYHHNQKDMRLY 853 +IFLHK++PG AD SYGI V KLAGLP V+ A +LK E + + +++ + L+ Sbjct: 748 KLIFLHKILPGPADQSYGIHVAKLAGLPRAVLREASSMLKRLEAEGAREINPSRQQLDLF 807 Query: 854 YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALK 892 P ++ E +N L + +++I +NL+E +PL ++ Sbjct: 808 SP-VEVVE-ENPLKAEQEELLDEISQVNLNEKTPLEVMQ 844 >gi|167750508|ref|ZP_02422635.1| hypothetical protein EUBSIR_01484 [Eubacterium siraeum DSM 15702] gi|167656434|gb|EDS00564.1| hypothetical protein EUBSIR_01484 [Eubacterium siraeum DSM 15702] Length = 870 Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust. Identities = 322/909 (35%), Positives = 491/909 (54%), Gaps = 87/909 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+EIK+ D ++FYR+GDFYE+F +DA++AS+ L +TLT R PMCG Sbjct: 14 TPMMQQYVEIKANYKDYILFYRLGDFYEMFNEDAMVASKELELTLTSRA-----GTPMCG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI+KLI G ++AICEQ P +K LV R++VRLV+ GT+ E +L Sbjct: 69 VPHHSAEGYIKKLIDKGFKVAICEQTTDPALSK-----GLVERDIVRLVSAGTVIEASML 123 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIM----RIDPREIIFS 200 +NY+ + + + DISTG + + +N + DI+ + P E++F+ Sbjct: 124 EDGSNNYISCIYVGENGTGMVFADISTGEVHAVEKANSKKTDEDIIAQFSQYTPVELLFN 183 Query: 201 EKELSHAE-YKSLFETLGNVAVAQPNVFFDHSISESRIADYYNIT-----TVDTFGSFSQ 254 + L+ + Y + G + Q D S I D IT T D G + Sbjct: 184 AEFLNRKQAYTFIRNRYGKCSAEQ---LSDEDFS---IDDVSEITAQFGGTADEIGLAGK 237 Query: 255 VEK-TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQ 312 A A + Y+ K Q + + A R NLE+ T+ SG ++ Sbjct: 238 DNALRALCALLRYLYKAQRSGAKRFVKLNVHSSGEFMQLGLATRRNLELTSTMRSGEKKG 297 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 SLL +D + T G R + I PLTD+ I R D++ I N + I+ L Sbjct: 298 SLLWVLDKTDTSMGRRKLRQCIEQPLTDTAAIIRRHDAVEALINNSAALYDIKTDLAKVY 357 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE 432 D+ R ++R+ KD+ + R IL LK+DL + +L +SL+ Sbjct: 358 DLERLMTRIIYKAANAKDVKALGATCR----ILPQ-LKSDLSQ-------ISTQLTRSLD 405 Query: 433 KTLSSM----------LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 K +S + ++D+ P +DGG++++G + LD R++ K ++A ++ + Sbjct: 406 KKISPLDDIADLVERAIADEPPALMKDGGYIKNGFNEELDRLRNITGGGKDLLAQIEQQE 465 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T IKNL++ +N GY+IEV+ + S++ DR++ +QT++N R+ T EL Sbjct: 466 KEATGIKNLRVGYNRVFGYYIEVSKGNVSMVP------DRYVRKQTLTNGERYITDELKK 519 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 +EN I A + L +E F + I + + + ++ +A +D+ + A+++ E NYC Sbjct: 520 IENEILGANDKILALEAAIFAEVREFIARRLDLIQQTAESVAALDVLCSYAVVSIENNYC 579 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 RP++ N + +KDGRHP+VEK + + F ND L D S +L ++TGPNM G Sbjct: 580 RPMMANDSVIEIKDGRHPVVEKMVNEI---LFTPNDVYL----DVKSNRLMIITGPNMSG 632 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KSTF+RQ A+IV+MAQ+G +VPASYA +G+VD++F+RVG++D+L++G+STFMVEM E A+ Sbjct: 633 KSTFMRQVAVIVLMAQIGCFVPASYARLGVVDRIFTRVGASDDLSAGQSTFMVEMTEVAT 692 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYL-HETNRCRGLLATHFHELTDLSKS 781 ILN+AT S VILDEIGRGT+T DG+SIA A EY+ + C+ L ATH+HEL L Sbjct: 693 ILNEATKNSLVILDEIGRGTSTYDGVSIAKAVAEYISSKAIGCKTLFATHYHELISLENE 752 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 L N +++V S E I FLHK++ G D SYGI+V +LAGLP V RA +L EK Sbjct: 753 LDGVRNYSVKVKRSGEDIKFLHKIVEGGTDDSYGIEVARLAGLPKKVTDRAKQLLAELEK 812 Query: 842 LYHHNQKDMRLYYPEIQTKESKNNL----------SKNDKLFVEKIKCLNLDEMSPLTAL 891 P+IQ + + + + +IK L+LD+M+P A Sbjct: 813 A------------PKIQRELELRAEEESESQIDFEATGRQNVIAEIKNLDLDDMTPREAY 860 Query: 892 KTLYAVKAW 900 L +KA Sbjct: 861 AKLEELKAM 869 >gi|325126232|gb|ADY85562.1| DNA mismatch repair protein [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 856 Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust. Identities = 301/879 (34%), Positives = 492/879 (55%), Gaps = 47/879 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K++TPMM QY +IK PD+ +FYR+GDFYEL+ DDA+ S+ L +TLT R IP Sbjct: 4 KATTPMMEQYYQIKDQYPDAFLFYRVGDFYELYEDDAIKGSQILELTLTHRSNKSENPIP 63 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP + Y+ L++ G+++AICEQ+E P +AK +V+R +++LVTPGT Sbjct: 64 MAGVPHMAVDSYVNTLVEKGYKVAICEQLEDPKKAK-----GMVKRGIIQLVTPGTKMAQ 118 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSE 201 +SNYL +V + +A+ D+STG IF ++ ++++++ + RE++F+ Sbjct: 119 GPDDSQESNYLTSVVEKAGGYGLAYSDLSTGEIFVTHVKHYAEVVNELLSLRTREVVFA- 177 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 LS ++ L + N+ V++P E Y D+ +EK A Sbjct: 178 GNLSASDRDRLQK--ANITVSEPAELE----GEHAEISYVQQKLTDS------MEKAAVR 225 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDY 320 + Y+ TQ + + E +I L + + + NLE+ ++ + R+Q SL +D Sbjct: 226 QLVVYLLATQKRSLAHLQVAESFEIGQYLQMANTVQRNLELTQSATTGRKQGSLFWVLDK 285 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGRL + ++ PL +I R + + + I LK D+ R R Sbjct: 286 TTTAMGGRLLKQWLSRPLLSLDRIKQRQQMVQALLDDYFTRENIVDSLKGVYDLERLSGR 345 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL--PQS-LEKTLSS 437 + G P+++ + + + I+ ++ P+ +EK + PQS L +++++ Sbjct: 346 VAFGNVNPRELLQLAKSLEATKLIIQTLAESGNPD-----LEKYGQGIDPQSELAESITN 400 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 L D P +DGG +R G LD+ R + K+ +A ++++ + T I NLKI +N Sbjct: 401 CLVDQPPISAKDGGIIRAGVSEDLDKYREAMNGGKKWLAQMEMEERQRTGIDNLKIGYNR 460 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GYFI+V+ + + + +DR+ +QT++N R+ T EL + EN I A + + + Sbjct: 461 VFGYFIQVSKGNVAKV-----PQDRYTRKQTLTNAERYITPELKEHENLILEAESRSTDL 515 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E E F L A+ L + +A +D+ +A A A+E+NYCRP + VK+G Sbjct: 516 EYELFSQLREAVKAHIPDLQELGRQLAALDVFVAFAQDAEEKNYCRPSFSSKNEIAVKNG 575 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE L S +I ND + D+++ ++L+TGPNM GKST++RQ ALI IMA Sbjct: 576 RHPVVEAVLPASS---YIPNDLVM----DEDTS-IYLITGPNMSGKSTYMRQLALIAIMA 627 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+GS+VPA A + + D++F+R+G+AD+L SG+STFMVEM E L A+++S V+ DE Sbjct: 628 QIGSFVPADSAKLPVFDQIFTRIGAADDLYSGKSTFMVEMSEANEALQHASSRSLVLFDE 687 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGTAT DG+++A A I+YLH+ + L ATH+HELT+L ++L N + ++ N Sbjct: 688 IGRGTATYDGMALAGAIIKYLHDKVGAKTLFATHYHELTELDETLLHLKNIHVGATEENG 747 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE----KLYHHNQKDMRLY 853 +IFLHK++PG AD SYGI V KLAGLP V+ A +LK E + + +++ + L+ Sbjct: 748 KLIFLHKILPGPADQSYGIHVAKLAGLPRAVLREASSMLKRLEAEGAREINPSRQQLDLF 807 Query: 854 YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALK 892 P ++ E +N L + +++I +NL+E +PL ++ Sbjct: 808 SP-VEVVE-ENPLKAEQEELLDEISQVNLNEKTPLEVMQ 844 >gi|34763050|ref|ZP_00144024.1| DNA mismatch repair protein mutS [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887276|gb|EAA24373.1| DNA mismatch repair protein mutS [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 896 Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust. Identities = 310/892 (34%), Positives = 519/892 (58%), Gaps = 39/892 (4%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TP+M+QY +IK + ++ +R+GDFYE+FF+DA +AS+ LG+TLTKR K G+D+ Sbjct: 20 MSADTPLMQQYKKIKKDYQNEILMFRLGDFYEMFFEDAKIASKELGLTLTKRNKEKGQDV 79 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 P+ GVP H+ YI KL++ G+ IAIC+Q+E P A +V+R V R++TPGT+ + Sbjct: 80 PLAGVPYHSVASYIAKLVEKGYSIAICDQVEDPKSAT-----GIVKREVTRVITPGTIID 134 Query: 142 DQLLSPTDSNYL--MAVARIRTEWAIAWIDISTG---IFKISTSNH-DRLISDIMRIDPR 195 L ++NY+ + + I + AIA+ DI+TG +F+I N ++ ++++ +I Sbjct: 135 VDFLDKNNNNYIACIKINTIESVAAIAYADITTGEFSVFEIKGKNFFEKALAEMNKIQAS 194 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ- 254 EI+ EK +++EY +F+ + + + + +E+ I Y+NI +++ F S+ Sbjct: 195 EILLDEK--TYSEYIEIFKEKMSFSGVKFTEVSNVKKAENFITSYFNIISIEVFSLKSKD 252 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSL 314 + + +A + YI + Q N+ E +I + + ++ + ++NL ++ + +L Sbjct: 253 LAISTSANLLHYIDELQKGNELPFSKIEYRNIDNIMELNISTQNNLNLVPKRNEEARGTL 312 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D +T G R + I +P D KI R +++F + +L +++ LK DV Sbjct: 313 LGVLDNCVTSVGSRELKKIIKNPFLDIEKIKQRQFYVDYFYNDVLLRENVREHLKDIYDV 372 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R ++ G KD+ ++D IR + L ++ +E++ ++ K+ + Sbjct: 373 ERIAGKIIYGTENGKDLLSLKDSIRKSLETYRLLKEH---QEIKNLLDIDVKILLEIYNK 429 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + ++S + P R+GG ++DG + LDE R + K I ++ + E T IK LKIK Sbjct: 430 IELIISVEAPFSVREGGIIKDGYNTELDELRKISKLGKDFILEIEQRERERTGIKGLKIK 489 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GYFIEVT ++ ++ KD +I +QT+ N R+ +L + E ++ A + Sbjct: 490 YNKVFGYFIEVTKANEHLVPKD------YIRKQTLVNSERYIVPDLKEYEEKVITAKSKI 543 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 +E E F+ L++ I E +SL + IA +DI + +A + +Y +P I + Sbjct: 544 EALEYELFKQLTSEIKEHIDSLYKLANRIANLDIVSNFSHIATKNSYVKPEISEEDILEI 603 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 K GRHPIVE + +S ++ ND L +DKN+ L +LTGPNM GKST+++Q AL + Sbjct: 604 KGGRHPIVETLI---ASGTYVKNDIVL---DDKNN--LIILTGPNMSGKSTYMKQVALNI 655 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMA +GSYV A YA I IVDK+F+RVG++D+L +G+STFM+EM E ASILN ATN+SF++ Sbjct: 656 IMAHIGSYVAADYAKIPIVDKIFTRVGASDDLLTGQSTFMLEMTEVASILNSATNKSFIV 715 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDEIGRGT+T DG+SIA A EY+H + + ATH+HELT+L K L+R N ++V + Sbjct: 716 LDEIGRGTSTYDGISIATAITEYIHNVIGAKTIFATHYHELTELEKELERAINFRVEVKE 775 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE---KLYHHNQK--D 849 + ++FL +++ G AD SYGI+V +L+G+P V++R+ ILK E L + K Sbjct: 776 DGKNVVFLREIVKGGADKSYGIEVARLSGVPKEVLNRSRKILKKLETRKNLIENKIKAEQ 835 Query: 850 MRLYYPEIQTKESKNN---LSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 M L+ + + LS+N+ +E +K ++L+ +SPL +L L +K Sbjct: 836 MMLFGSGFEEDFEEEETEILSENENKVLELLKNMDLNSLSPLESLLKLNELK 887 >gi|254167004|ref|ZP_04873857.1| DNA mismatch repair protein MutS [Aciduliprofundum boonei T469] gi|197623860|gb|EDY36422.1| DNA mismatch repair protein MutS [Aciduliprofundum boonei T469] Length = 823 Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust. Identities = 317/875 (36%), Positives = 504/875 (57%), Gaps = 63/875 (7%) Query: 29 MRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPV 88 MRQY IK+ D+++F+R+GDFYE F DDA L S+ L I LT+R K + +PM G+P Sbjct: 1 MRQYHRIKAKYKDTILFFRVGDFYETFEDDAKLVSKELNIVLTRRSKD--EPVPMAGIPY 58 Query: 89 HTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPT 148 H + Y+ +L+K G+++AICEQ+E P AK RG LVRR+VVR+VTPGTL ED LL+ Sbjct: 59 HALDAYLSRLVKKGYKVAICEQLEDP--AKARG---LVRRDVVRVVTPGTLIEDTLLTE- 112 Query: 149 DSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHAE 208 D+N+L ++ + + + A +DISTG F + L ++I+R+ P EI LS+++ Sbjct: 113 DNNFLFSIYKHKDIYGFAALDISTGEFFAGELDFYGLNAEILRLQPSEI------LSNSK 166 Query: 209 YKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIK 268 F + + + D+ E + +++ + + FG + AAA+A+ Y K Sbjct: 167 LNLDFP----IKILAEEYYNDY---EKILKEHFKVAELSGFG-IGEYGLMAAASALKYAK 218 Query: 269 KTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGR 328 + M + I + L +DS NLEI + G + +L T++ T G R Sbjct: 219 ENTMNDLKNITSLQGYFKDKYLILDSTTLKNLEIFHNVLGEDKYTLYHTMNKCETPMGAR 278 Query: 329 LFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEP 388 L + PL D +IN RLD++ +L + I+ IL D+ R +R+ +GR P Sbjct: 279 LLKRWMQRPLKDIDEINDRLDAVEELANKQLLQDSIRTILSRIKDIERIKTRVSLGRAVP 338 Query: 389 KDIAVIRDGIRSG----INILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLP 444 +D+ +++ ++ IN + LKN + K+ + +E + + ++ D P Sbjct: 339 RDLISLKESLKQADKLRINFESKILKN--------SASKIYGIEGIIE-LIENAINGDYP 389 Query: 445 TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIE 504 + G +++G + LDE + + +K +I ++ + T IKNLKI +N+ +GY+IE Sbjct: 390 VGE---GVIKEGYNEELDEIKRIASNAKLLIGKMEERERRSTGIKNLKIGYNDVMGYYIE 446 Query: 505 VTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEI 564 V+ S+ S + K + +QT+ N RF T EL DLE +I +A + IE + ++ Sbjct: 447 VSKSNLSKVPK------HYRRKQTLKNSERFITDELKDLEYKILSAKDRIYEIENKIYKD 500 Query: 565 LSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEK 624 + + E + ++ ++ IAIID+ +LA +A E NY RP +D S + +++GRHP+VE Sbjct: 501 ILKKLGEMIDVIERTAKSIAIIDVISSLARVALEMNYTRPEVDESMDIEIRNGRHPVVE- 559 Query: 625 TLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684 F+ ND ++ + + +LTGPNM GKST++RQ ALIVI+AQMGS+VP Sbjct: 560 -----LYTDFVPNDTHINS-----AARFIILTGPNMAGKSTYMRQVALIVILAQMGSFVP 609 Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744 A YA IGIVD++++RVG++D++ GRSTFM+EM+E A+ILN AT +S ++LDEIGRGT+T Sbjct: 610 ADYAKIGIVDRIYTRVGASDDITRGRSTFMMEMVELANILNTATERSLILLDEIGRGTST 669 Query: 745 LDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHK 804 DGL+IAW+ E++H + R R + ATH+H L DL L N + V ++ +G+IF+ K Sbjct: 670 YDGLAIAWSITEHIHNSIRARTIFATHYHHLIDLENVLDNVRNYHIAVKETQDGLIFVRK 729 Query: 805 VIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKE-SK 863 V+PG SYGI+V KLAG+P V+ RA +IL E+ ++R IQT + Sbjct: 730 VMPGGMSKSYGIEVAKLAGVPEKVVKRAKEILNLIEE---KKVIEVRRGKKIIQTMLFGE 786 Query: 864 NNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 N S +++IK +++ ++PL AL L +K Sbjct: 787 ENCSD----ILDEIKRMDIMNLTPLEALNKLNELK 817 >gi|251796615|ref|YP_003011346.1| DNA mismatch repair protein MutS [Paenibacillus sp. JDR-2] gi|247544241|gb|ACT01260.1| DNA mismatch repair protein MutS [Paenibacillus sp. JDR-2] Length = 900 Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust. Identities = 288/820 (35%), Positives = 469/820 (57%), Gaps = 33/820 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+ IK D+ +F+R+GDFYE+FFDDA+ ASR L ITLT R + + IPMCG Sbjct: 5 TPMIQQYLAIKEQAKDAFLFFRLGDFYEMFFDDAINASRELEITLTGREGGMSEKIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A +YI +L++ G ++A+CEQ+E P AK +VRR +VR++TPGT+ E + L Sbjct: 65 VPYHSAENYIARLVEKGFKVAVCEQVEDPSAAK-----GVVRREIVRVITPGTVMESKSL 119 Query: 146 SPTDSNYLMAVARIRTEW-AIAWIDISTG-IFKISTS-NHDRLISDIMRIDPREIIFSEK 202 + +N++++V + T +A D+STG ++ S + N D LI +I P EI+ E Sbjct: 120 ADKSNNFIVSVGSVSTAAIGMAACDLSTGELYATSLAFNIDTLIDEINVYQPAEIVGDEN 179 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 L+ + ++++ + +P ++E ++ + + + ++ ++ A + Sbjct: 180 LLAQLKEQAVWNRPVLLTSRKP-------MAEDKLREQFEASQLEVL---NETRYRAVSL 229 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDYS 321 Y+ +TQ + + + + +D R NLE+ T+ S++ SLL +D + Sbjct: 230 LTGYLDETQKRSLGHVRTIRAYEPNQYMILDHYTRRNLELTETVRDRSKKGSLLWLLDRT 289 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G RL I PL + +KI R ++++ +N I + I+ L D+ R + R+ Sbjct: 290 QTSMGARLLRRWIDKPLLNRSKIEERYEAVDALYRNLIARDDIRSELNHVYDLERLVGRV 349 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 G +D+ +R IR ++ L + E LR V+ L L + +++ D Sbjct: 350 AFGSANGRDMNALRSSIRRTPQLVEL-ARQAGSERLRQLVDGLDDC-SDLADLIETVIVD 407 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + P R+GG +R G D LD+ R K+ +A L+ + E T IK +KI N GY Sbjct: 408 EPPVSIREGGLIRAGYDDYLDQLREASTNGKKWLAELERREREATGIKTIKIGFNKVFGY 467 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 ++EV+ + +L + R+ +QT++N RF T EL + E I A + + +E Sbjct: 468 YLEVSKGALGLL-----PEGRYERKQTLANAERFVTPELKEKERLILEAEDKMVDLEYAR 522 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 F L + + Q L ++V+A +D+ +LA ++ E+ + RP+I + N ++++GRHP+ Sbjct: 523 FIELRDHLALQLHRLQRLAEVVAELDVYQSLATVSAERRFVRPVITDQYNLVIEEGRHPV 582 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE + PFI N L + + L+TGPNM GKST++RQ ALI IMAQ+G Sbjct: 583 VEAVM---DGVPFINNATSLR----QEEQSMLLITGPNMAGKSTYMRQVALICIMAQIGC 635 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA A I ++D++F+R+G+AD+L G+STFMVEM + + +AT S VI+DE+GRG Sbjct: 636 FVPAKTAEIPMIDRIFTRIGAADDLIGGQSTFMVEMKDIQLMTEKATASSLVIIDELGRG 695 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 T+T +G+SIA A IE++H C+ L++THFHEL+ L SL + NA + V +S + + F Sbjct: 696 TSTSEGMSIAQAVIEFVHHHIGCKALVSTHFHELSHLEASLPKLANACMAVQESGDHVTF 755 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 L K+IPG A SYGI +LAGLPN++I RAY +L+ E+ Sbjct: 756 LRKLIPGAASTSYGIYCARLAGLPNSIIDRAYVLLEHLEE 795 >gi|310658532|ref|YP_003936253.1| DNA mismatch repair recognition factor [Clostridium sticklandii DSM 519] gi|308825310|emb|CBH21348.1| DNA mismatch repair recognition factor [Clostridium sticklandii] Length = 853 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 318/886 (35%), Positives = 504/886 (56%), Gaps = 54/886 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY+EIK + D ++F+R+GDFYE+FF+DA+ AS L ITLT + L + PMCG Sbjct: 5 TPMMRQYLEIKENHKDCILFFRLGDFYEMFFEDAVTASEILDITLTGKACGLKERAPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H++ YIQKLI G ++A+CEQ+E P +AK +V+R VV++VTPGT+ ++ ++ Sbjct: 65 IPYHSSQGYIQKLILAGKKVAVCEQVEDPSQAK-----GIVKREVVKIVTPGTIIDEDII 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREII--FSEKE 203 +NYL++ T I++IDISTG + N L +I+P EII S KE Sbjct: 120 DREKNNYLLSFLINNTNVDISYIDISTGELSTTVINKSELSDLFFKINPSEIITNASSKE 179 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITT-VDTFGSFSQVEKTAAAA 262 + ++ + L N +++ N+ + ISE I + + + +DT S S + Sbjct: 180 ILDSDLDKNIK-LINSYISENNIIMN--ISEELIDESWLLNNKLDTNISLSLYK------ 230 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYS 321 YI TQ K ++D L ID NLEI+ T+ S+++ SL +D + Sbjct: 231 IFRYINHTQ---KSINLNMTKKDNGEALIIDHFTLKNLEIIETIRRSKKKGSLFWVLDDT 287 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G R+ + PL + T IN+RL+ I+ F QN ++ IL D+ R +L Sbjct: 288 KTAMGARMLKNWLLYPLKNETLINSRLNYIDLFFQNTDFTLKMRNILNHISDLERICQKL 347 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 + DI +++ S I L F+ E LR K+ L E SS+++ Sbjct: 348 SYDSIKTDDILRLKES-TSMIIELKKFMAMSEFELLRDFYLKIPDLEYVFELIDSSIINK 406 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 D + ++ ++ + L E R+L D S +I ++ + T IK LKI +N GY Sbjct: 407 DFNS--KEKYIIKSSFNDELSELRNLIDHSAEMILGVEQREKLRTGIKTLKIGYNKVFGY 464 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IE+T ++ K+ + +I +QT++N RF + EL LE +I A + A +E Sbjct: 465 YIEITHANL----KNFDIPSDYIRKQTLTNGERFISEELKLLEEKILTAKDKADSLEKHI 520 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 FE + + +L +AS+V+AI+D +LA +A N+ RP I+N +++GRHP+ Sbjct: 521 FENIKMELKNHINNLLSASKVVAILDCYQSLATVANNNNFVRPEINNKGYIKLENGRHPV 580 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 +EK S F+ ND + G + ++TGPNM GKST++RQ A+IV++A +GS Sbjct: 581 IEK---MTSDYMFVPNDTTIE------DGIIQIITGPNMAGKSTYMRQVAIIVLLAHIGS 631 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VP S A I ++D++F+R+G++D+L+ G+STFMVEMIE A+IL A++ SF+ILDEIGRG Sbjct: 632 FVPCSKAEICLIDRIFTRIGASDDLSQGQSTFMVEMIEVANILQNASSNSFIILDEIGRG 691 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 T+T DG+SIA+A I+Y+ + + + L++TH+HE+T L S K N ++ V + N+ + F Sbjct: 692 TSTYDGMSIAFAVIKYIEDQIKAKTLVSTHYHEITSLEDSSKNIQNYSMLVEEVNDNVNF 751 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKE 861 L K++ G AD SYGI V LA LP+ +I A D L++ E ++ +Y P+IQ+ + Sbjct: 752 LRKIVKGKADKSYGIHVAMLANLPSQIIDLAQDTLESLE-------SNVSVYKPKIQSTK 804 Query: 862 SKNNLSKNDKLFVEK---------IKCLNLDEMSPLTALKTLYAVK 898 K++ +N +L +E+ IK L+L+ +PL AL L +K Sbjct: 805 -KSSEVENHQLSLEQYFYDNIISEIKTLDLNNTTPLEALTILNNLK 849 >gi|291519454|emb|CBK74675.1| DNA mismatch repair protein MutS [Butyrivibrio fibrisolvens 16/4] Length = 814 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 298/838 (35%), Positives = 486/838 (57%), Gaps = 61/838 (7%) Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H A+ YI +L+ G+++AICEQ+E P EAK LV+R V+R+VTPGT + Sbjct: 6 PMCGVPFHAADTYINRLVSRGYKVAICEQVEDPKEAK-----GLVKREVIRVVTPGTNID 60 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFS 200 L +NY+M++ R + ++ DIST F ++ N +L+ ++ R +P EII+S Sbjct: 61 QMALEEGSNNYIMSIFYNRGVFGVSSCDISTADFYLTEVDNVRKLLDELFRFNPAEIIYS 120 Query: 201 EKELSHAEYKSLFETLGNV---------AVAQ-PNVFFDHSISESRIADYYNITTVDTFG 250 KS+FE+ ++ A++Q + FFD ++S I ++++ +++ G Sbjct: 121 ---------KSIFESGIDITEVSQKLESALSQLDDSFFDETLSTREILNHFHAHSLEGLG 171 Query: 251 SFS-QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS 309 + AA A +SY+K TQ + + + +D++ R NLE+ T+ Sbjct: 172 LMEFPFGRVAAGALLSYLKDTQKTELAHLTHITPYTDGKYMLLDNSTRRNLELTETMRDK 231 Query: 310 REQ-SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKIL 368 +++ SLL +D + T G R + PL +I R D+I+ ++ I +++ L Sbjct: 232 QKRGSLLWVLDKTKTAMGARQLKSFVEQPLLSVDEIIRRQDAISELNESLIDREELREYL 291 Query: 369 KSSPDVPRSLSRLKIGRGEPKDIAVIRD--GIRSGINILNLFLKNDLPEELRGAVEKLKK 426 S D+ R ++++ P+D+ + G+ S I L L ++ ++ +K Sbjct: 292 SSVYDLERLITKITYQSANPRDLIAFKQSIGMLSPIKTLLASFHCHLLDDTNANIDDMKD 351 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 L + ++ + + ++ P RDG ++ G + +D R + K+ +A L+ K ++T Sbjct: 352 LYELID----AAIDEEPPISSRDGDIIKTGFNEEVDRLRRAKVDGKQWLAELEAKERDKT 407 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 IKNLKIK N G+++EVT+S KDL D ++ +QT++N R+ T EL +LE+ Sbjct: 408 GIKNLKIKFNKVFGFYLEVTNSY-----KDL-VPDYYVRKQTLANAERYYTPELKELEDS 461 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 I A + +E E F+ + + I + + ++ IA++D I+LA++A++ +Y RPII Sbjct: 462 ILGAEDRLNTLEYEYFKTVRDTIASNVDRIQITAKAIALLDAMISLAVVAEKNHYVRPII 521 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 DN +KDGRHP+VE+ + ++ FI+NDC L D +S + ++TGPNM GKST+ Sbjct: 522 DNRGIIDIKDGRHPVVEQMI---NADQFISNDCQL----DLDSRTIAIITGPNMAGKSTY 574 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ ALIV+MAQ+GS+VPAS A IG+VD++F+RVG++D+L++G+STFMVEM E A+IL+ Sbjct: 575 MRQVALIVLMAQIGSFVPASSAQIGVVDRIFTRVGASDDLSTGQSTFMVEMNEVANILHN 634 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 ATN+S +ILDEIGRGT+T DGLSIAW+ +E++ + L ATH+HELT+L +K H Sbjct: 635 ATNKSLLILDEIGRGTSTYDGLSIAWSVVEHIAYKIGAKTLFATHYHELTELEGQIKGVH 694 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN 846 N + V + E IIFL K+IPG AD SYGIQV +LAGLP V+SRA I+ + N Sbjct: 695 NYCIAVQELGEDIIFLRKIIPGGADQSYGIQVARLAGLPEEVLSRARTIVNSL------N 748 Query: 847 QKDMRLYYPEIQTKESKN---------NLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 + D+ I +E +S+N+ + +K L++ +++PL A+ L+ Sbjct: 749 ENDIAAVSDRISIREQVEEKLKSLEGVTISENEGEIIAGLKELDVTKITPLEAMNILF 806 >gi|56459853|ref|YP_155134.1| DNA mismatch repair protein MutS [Idiomarina loihiensis L2TR] gi|56178863|gb|AAV81585.1| Mismatch repair ATPase [Idiomarina loihiensis L2TR] Length = 843 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 305/878 (34%), Positives = 486/878 (55%), Gaps = 73/878 (8%) Query: 43 LVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIG 102 L+FYRMGDFYELFF+DA +++ L I+LT RG+ G+ IPM GVP H +Y+ +L+ +G Sbjct: 2 LLFYRMGDFYELFFEDAKRSAQLLDISLTARGQSNGEPIPMAGVPYHAVENYLARLVNMG 61 Query: 103 HRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARI--- 159 +AICEQI P +K V R VVR+VTPGT+T++ LL+ N L+A+ + Sbjct: 62 ESVAICEQIGDPATSK-----GPVERKVVRIVTPGTVTDESLLAEKRQNLLVAICPLNPK 116 Query: 160 --RTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEK------ELSHAEYK 210 E+AI+ +++S+G F ++ ++ ++L +++ R++P E+++ E L+ A+ K Sbjct: 117 QPEAEYAISSLELSSGRFWLTKAHSSEQLAAEMQRLEPAELLYPESISLAGLPLAKAKCK 176 Query: 211 SLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI-SYIKK 269 +P F+ + + + ++ FG + AAA AI Y+K+ Sbjct: 177 R-----------RPAWEFEQQTAFMLLTRQFGTQHLEGFGIKNNEPTLAAAGAILHYVKE 225 Query: 270 TQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRL 329 TQ P I E Q + +D+A R NLE+ +++ G + L +D +++ G R Sbjct: 226 TQRAALPHIQALITEHPQDAIILDAATRRNLELQQSM-GEGDTHLSAVLDKTVSAMGSRQ 284 Query: 330 FAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPK 389 F + P+ + ++N R D+++ +N N IQ LK D+ R ++R+ + PK Sbjct: 285 FQRWLQRPIRNHQELNQRYDAVDALKENLNFEN-IQLTLKQLADIERIVARVGLRSARPK 343 Query: 390 DIAVIRDG------IRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 D A +RD +R+ ++ +L +D+ E V+ L K + + Sbjct: 344 DFARLRDSLAKIPEVRASLSHRSLSYLHDIIEPFPEVVDLLTK-----------AVIEQP 392 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P RDGG + +G D LDE R L + + L+ + E + I LK+ +N GYFI Sbjct: 393 PLLIRDGGVIAEGYDKELDELRDLATGATDYLKQLEQRERERSGIATLKVGYNRVHGYFI 452 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EV+ S+ + D + RQT+ N R+ EL + E+++ NA +L E ++ Sbjct: 453 EVSRQSSEAVPDD------YQRRQTLKNTERYIIPELKEHEDKVLNAQARSLAREKWLYD 506 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI-VKDGRHPIV 622 L ++ Q +L ++ +A +D A LA YCRP + T+ I ++ RHP++ Sbjct: 507 QLFEHLLPQVTALQKSASGLAQLDTLCCFARLADNYRYCRPQLQKETSLIELEAARHPVI 566 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 E Q S +PFIAN L+ P + + ++TGPNMGGKST++RQ ALIVI+A MG Y Sbjct: 567 E----QLSDEPFIANPMSLT-PQQR----MLMITGPNMGGKSTYMRQAALIVILAHMGCY 617 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT +S V++DEIGRGT Sbjct: 618 VPADKAIIGDIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATAKSLVLMDEIGRGT 677 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFL 802 +T DGLS+AW+ +YL +C L ATH+ ELT+L++ L N + + + I FL Sbjct: 678 STYDGLSLAWSCADYLSRQLQCLTLFATHYFELTELAEELPATVNVHVDAKEHGDTIAFL 737 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN-----QKDMRLYYPEI 857 HKV PG A S+G+QV KLAG+P VI +A L E +H Q M L P Sbjct: 738 HKVSPGAASQSFGLQVAKLAGVPEHVIHKAKQKLSELEHTHHGGLNEPKQATMELTPP-- 795 Query: 858 QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 E+ + ++ +++++ L++++++P AL LY Sbjct: 796 --PEAIPSHTEKRNPLLDELEQLDINDLTPKQALDILY 831 >gi|60683780|ref|YP_213924.1| DNA mismatch repair protein MutS [Bacteroides fragilis NCTC 9343] gi|81313173|sp|Q5L7B7|MUTS_BACFN RecName: Full=DNA mismatch repair protein mutS gi|60495214|emb|CAH10035.1| putative DNA mismatch repair protein MutS [Bacteroides fragilis NCTC 9343] gi|301165365|emb|CBW24937.1| putative DNA mismatch repair protein MutS [Bacteroides fragilis 638R] Length = 879 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 304/886 (34%), Positives = 492/886 (55%), Gaps = 41/886 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+Q++++K+ +PD+++ +R GDFYE + DA++A+ LGITLTKR GK + M G Sbjct: 16 TPMMKQFLDLKAKHPDAVMLFRCGDFYETYSTDAIIAAEILGITLTKRANGKGKTVEMAG 75 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KLI+ G R+AIC+Q+E P KK LV+R + LVTPG D +L Sbjct: 76 FPHHALDTYLPKLIRAGKRVAICDQLEDPKTTKK-----LVKRGITELVTPGVSINDNVL 130 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF--SEKE 203 + ++N+L AV ++ IA++DISTG F + D + + P+EI+F ++ Sbjct: 131 NYKENNFLAAVHFGKSACGIAFLDISTGEFLTAEGPFDYVDKLLNNFAPKEILFERGKRG 190 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + + S F T + F S S ++ ++ + FG A+ A Sbjct: 191 MFEGNFGSKFFTF-----ELDDWVFTESSSREKLLKHFETKNLKGFGVEHLKNGIIASGA 245 Query: 264 I-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 I Y+ T+ I R + + +D +LE++ +++ SLL ID +I Sbjct: 246 ILQYLDMTEHTQVGHITSLARIEEDKYVRLDKFTVRSLELIGSMNDGG-SSLLHVIDKTI 304 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 + G RL + PL D IN RL+ + +F + P I+ L D+ R +S++ Sbjct: 305 SPMGARLLKRWMVFPLKDEKPINDRLNVVEYFFRKPDFRELIEDELHRIGDLERIISKVA 364 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 +GR P+++ ++ +++ I + D P L E+L L S+ + +++D Sbjct: 365 VGRVSPREVVQLKVALQAIEPIKEACQQADNPS-LNRIGEQLN-LCISIRDRIEKEINND 422 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P GG ++DG D LDE R + K + +Q + +E T I +LKI +N+ GY+ Sbjct: 423 PPLLINKGGVIKDGVDTELDELRQIAYSGKDYLLKIQQRESELTGIPSLKIAYNSVFGYY 482 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IEV + + KD + +I +QT+ N R+ T EL + E +I A + L++E + Sbjct: 483 IEVRN-----VHKD-KVPQEWIRKQTLVNAERYITQELKEYEEKILGAEDKILVLETRLY 536 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 L A+ E ++ + IA ID ++ A +AKE NY RP+I+++ ++ GRHP++ Sbjct: 537 TELVQALSEFIPAIQINANQIARIDCLLSFANVAKENNYIRPVIEDNDVLDIRQGRHPVI 596 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 EK L + +IAND L D + ++ ++TGPNM GKS LRQ ALI ++AQ+GS+ Sbjct: 597 EKQLP--IGEKYIANDVLL----DNATQQVIIITGPNMAGKSALLRQTALITLLAQIGSF 650 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA AHIG+VDK+F+RVG++DN++ G STFMVEM E + ILN +++S V+ DE+GRGT Sbjct: 651 VPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEASDILNNISSRSLVLFDELGRGT 710 Query: 743 ATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 +T DG+SIAWA +EY+HE + R L ATH+HEL ++ KS KR N + V + + +I Sbjct: 711 STYDGISIAWAIVEYIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEVDNKVI 770 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 FL K+ G ++HS+GI V K+AG+P +++ RA +ILK E N++ P + Sbjct: 771 FLRKLERGGSEHSFGIHVAKMAGMPKSIVKRANEILKQLES---DNRQQGISGKPLAEVS 827 Query: 861 ESKNNLSKNDKLFVEKIKC--------LNLDEMSPLTALKTLYAVK 898 E++ + + + I C L+++ ++P+ AL L +K Sbjct: 828 ENRGGMQLSFFQLDDPILCQIRDEILHLDVNNLTPIEALNKLNDIK 873 >gi|312171355|emb|CBX79614.1| DNA mismatch repair protein mutS [Erwinia amylovora ATCC BAA-2158] Length = 853 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 309/891 (34%), Positives = 494/891 (55%), Gaps = 53/891 (5%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 ++++L TPMM+QY+ +K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LT+RG Sbjct: 5 IDKDLSVHTPMMQQYLRLKAEHPEILLFYRMGDFYELFYDDAKRASQLLEISLTRRGSSA 64 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G IPM GVP H +Y+ KL+++G +AICEQI P +K V R VVR+VTPG Sbjct: 65 GDPIPMAGVPYHAVENYLAKLVQLGESVAICEQIGDPA-----ASKGPVERKVVRIVTPG 119 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPRE 196 T++++ LL+ N L A+ + A +DIS+G F+++ ++ + + +++ R +P E Sbjct: 120 TISDEALLNERQDNLLAAIWHSPRGFGYATLDISSGRFRLAEPADLETMAAELQRTNPAE 179 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 +++ E + A L E N + +++ + +R T D G F VE Sbjct: 180 LLYPEDFAAMA----LIE---NRRGLRRRPLWEYELDTARQQLNLQFATRD-LGGFG-VE 230 Query: 257 KT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 + AA + Y+K TQ + P I E Q + +D+A R NLEI + L+G E Sbjct: 231 QAHLALRAAGCLLQYVKDTQRTSLPHIRSLTMERQQDGIIMDAATRRNLEITQNLAGGSE 290 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 +L +D ++T G R+ + PL ++ I R SI +Q+ L + + +L+ Sbjct: 291 NTLASVLDKTVTAMGSRMLKRWLNMPLRNTQTITLRQQSIRA-LQD--LSDNLSPLLRQV 347 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSL 431 D+ R L+RL + P+D+A +R + + +LN L N L+ ++ + + L Sbjct: 348 GDLERILARLALRTARPRDLARMRHAFQQ-LPLLNSELLNSDIAHLQTLRSQMGEFTE-L 405 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + L + + P RDGG + G + LDE R+L D + + L+++ E+ + L Sbjct: 406 RELLDRAIVETPPVLVRDGGVIAPGYNQELDEWRALADGATDYLERLEIREREKLGLDTL 465 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 K+ N GY+I+V+ + ++++ ++ RQT+ N R+ EL + E+++ + Sbjct: 466 KVGFNGVHGYYIQVSRAQSNLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSK 519 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 AL +E ++ L + ++ E+L +++ +A +D+ LA A NY P + ++ Sbjct: 520 GKALSLEKSLYDQLFDMLLPHLEALQDSASALAELDVLSNLAERALTLNYHCPTLSDTPG 579 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 + GRHP+VE+ LK+ PFIAN LS ++ ++TGPNMGGKST++RQ A Sbjct: 580 IQLTGGRHPVVEQVLKE----PFIANPLSLSPQR-----RMLVVTGPNMGGKSTYMRQAA 630 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LI +MA +GS+VPA A IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ A+ S Sbjct: 631 LITLMAYIGSFVPADQAVIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNASEYS 690 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + N L Sbjct: 691 LVLMDEIGRGTSTYDGLSLAWACAESLANRIKALTLFATHYFELTTLPEQIDGVANVHLD 750 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR 851 + + I F+H V G A SYG+ V LAG+P VI RA LK E L Sbjct: 751 AVEHGDTIAFMHSVQEGAASKSYGLAVAALAGVPKDVIKRARQKLKQLEALSGSAAS--- 807 Query: 852 LYYPEIQTKESKNNLS---KNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 TK + + L ++ +E ++ L+ D +SP AL+ +Y +K+ Sbjct: 808 -------TKANGSQLPLLVEDTSPALEALEALDPDSLSPRQALEWIYRLKS 851 >gi|311278286|ref|YP_003940517.1| DNA mismatch repair protein MutS [Enterobacter cloacae SCF1] gi|308747481|gb|ADO47233.1| DNA mismatch repair protein MutS [Enterobacter cloacae SCF1] Length = 855 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 308/895 (34%), Positives = 481/895 (53%), Gaps = 61/895 (6%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 E + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G Sbjct: 6 EMDYSDHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAG 65 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM GVP H +Y+ KL+ +G +AICEQI P +K V R VVR+VTPGT Sbjct: 66 EPIPMAGVPHHAVENYLAKLVNLGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGT 120 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N L A+ + + A +DIS+G F++S ++ D + +++ R +P E+ Sbjct: 121 ISDEALLQERQDNLLAALWQDSKGYGYATLDISSGRFRLSEPADRDTMAAELQRTNPAEL 180 Query: 198 IFSE--KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQV 255 +++E EL+ E + ++ I +R T D G F V Sbjct: 181 LYAEDFAELALIEGRRGLRR---------RPLWEFEIDTARQQLNLQFGTRDLVG-FG-V 229 Query: 256 EKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR 310 E AA + Y+K TQ P I E Q ++ +D+A R NLEI + L+G Sbjct: 230 ENAPRGLCAAGCLLQYVKDTQRTALPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGV 289 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 E +L +D ++T G R+ + P+ D+ + R +I + L+ P+ L+ Sbjct: 290 ENTLAAVLDCTVTPMGSRMLKRWLHMPVRDTAVLLDRQQTIGALQDSVELLQPV---LRQ 346 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS 430 D+ R L+RL + P+D+A +R + + L D L EK+ + Sbjct: 347 VGDLERILARLALRTARPRDLARMRHAFQQLPELRELLAGVDSAPVL-ALREKMGEF-TG 404 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L + L + + P RDGG + G + LDE RSL D + + L+++ E + Sbjct: 405 LRELLERAIIEAPPVLVRDGGVIAPGYNEELDEWRSLADGATDYLDRLEIRERERLGLDT 464 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ +N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + Sbjct: 465 LKVGYNAVHGYYIQISRGQSHM------APIHYVRRQTLKNAERYIIPELKEYEDKVLTS 518 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 AL +E + ++ L + ++ L ++ +A +D+ + LA A NY P+ + Sbjct: 519 KGKALALEKQLYDELFDLLLPHLAELQQSAAALAELDVLVNLAERAYTLNYSCPVFSDKP 578 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 + +GRHP+VE+ L + PFIAN LS ++ ++TGPNMGGKST++RQ Sbjct: 579 GIRIVEGRHPVVEQVLNE----PFIANPLSLSPQR-----RMLIITGPNMGGKSTYMRQT 629 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI ++A +GSYVPA A +G +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT Sbjct: 630 ALIALLAYIGSYVPAQKAELGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEN 689 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L Sbjct: 690 SLVLMDEIGRGTSTYDGLSLAWACAESLANRIKALTLFATHYFELTQLPEKMEGVANVHL 749 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH----- 845 + + I F+H V G A SYG+ V LAG+P VI RA L+ E L + Sbjct: 750 DALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESLSPNAAATQ 809 Query: 846 -NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + M L P +T + VE + L+ D ++P AL+ +Y +K+ Sbjct: 810 IDGTQMSLLAPAEETSPA-----------VEALDNLDPDSLTPRQALEWIYRLKS 853 >gi|260599097|ref|YP_003211668.1| DNA mismatch repair protein MutS [Cronobacter turicensis z3032] gi|260218274|emb|CBA33224.1| DNA mismatch repair protein mutS [Cronobacter turicensis z3032] Length = 853 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 311/889 (34%), Positives = 486/889 (54%), Gaps = 51/889 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E + TPMM+QY+++K+ +PD L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ETFDAHTPMMQQYLKLKAQHPDILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H +Y+ KL+ +G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGVPHHAVENYLAKLVNLGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREI 197 +++ LL N L A+ + + A +DIS+G F++ T DR + +++ R +P E+ Sbjct: 120 SDEALLQERQDNLLAAIWQDGKGFGYATLDISSGRFRL-TEPQDRETMAAELQRTNPAEL 178 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 +++E AE +L E + F+ + ++ + + FG + Sbjct: 179 LYAE---DFAEM-ALIEGRRGLRRRP-LWEFELDTARQQLNLQFGTRDLVGFGVENAPRG 233 Query: 258 TAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 AA + Y+K TQ + P I E Q + +D+A R NLEI + L+G E +L Sbjct: 234 LCAAGCLLQYVKDTQRTSLPHIRSITMERQQDGIIMDAATRRNLEITQNLAGGVENTLAS 293 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D ++T G R+ + P+ D++ + R +I ++ I P+ L+ D+ R Sbjct: 294 VLDCTVTPMGSRMLKRWLHMPVRDASVLRHRQQAIAALMEYSTDIQPV---LRQVGDLER 350 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN---DLPEELRGAVEKLKKLPQSLEK 433 L+RL + P+D+A +R + + LN L + + LR + + +L LE+ Sbjct: 351 ILARLALRTARPRDLARMRHAFQQ-LPTLNTLLTDIDAGYVQTLREQMGEFTELRDLLER 409 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + + P RDGG + G A LDE R+L D + + L+++ E+ I LK+ Sbjct: 410 AII----EAPPVLVRDGGVIAPGYHAELDEWRALADGATDYLDRLEIREREKLGIDTLKV 465 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GYFI+V+ + ++ ++ RQT+ N R+ EL + E+++ + Sbjct: 466 GFNAVHGYFIQVSRGQSHMVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSKGK 519 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E + ++ L + ++ L ++ +A +D+ LA A NY P + + Sbjct: 520 ALALEKQLYDELFDLLLPHLAELQKSAAALAELDVLTNLAERADTLNYHCPTLTDKPGVR 579 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + +GRHP+VE+ L + PFIAN LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 580 LVEGRHPVVERVLNE----PFIANPLSLSPQR-----RMLIITGPNMGGKSTYMRQTALI 630 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 V+MA +GS+VPA A IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V Sbjct: 631 VLMAYIGSFVPAEQAEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEHSLV 690 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L Sbjct: 691 LMDEIGRGTSTYDGLSLAWACAESLANRIKALTLFATHYFELTQLPEKMEGVANVHLDAI 750 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH---NQKDM 850 + + I F+H V G A SYG+ V LAG+P VI RA L+ E + + Q D Sbjct: 751 EHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESISGNAAATQVD- 809 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 T+ S ++ +E ++ L+ D +SP AL+ +Y +K+ Sbjct: 810 -------GTQMSLLVAAEETSPAIEALENLDPDSLSPRQALEWIYRLKS 851 >gi|253564607|ref|ZP_04842064.1| DNA mismatch repair protein mutS [Bacteroides sp. 3_2_5] gi|265764729|ref|ZP_06093004.1| DNA mismatch repair protein MutS [Bacteroides sp. 2_1_16] gi|251948383|gb|EES88665.1| DNA mismatch repair protein mutS [Bacteroides sp. 3_2_5] gi|263254113|gb|EEZ25547.1| DNA mismatch repair protein MutS [Bacteroides sp. 2_1_16] Length = 871 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 304/886 (34%), Positives = 492/886 (55%), Gaps = 41/886 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+Q++++K+ +PD+++ +R GDFYE + DA++A+ LGITLTKR GK + M G Sbjct: 8 TPMMKQFLDLKAKHPDAVMLFRCGDFYETYSTDAIIAAEILGITLTKRANGKGKTVEMAG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KLI+ G R+AIC+Q+E P KK LV+R + LVTPG D +L Sbjct: 68 FPHHALDTYLPKLIRAGKRVAICDQLEDPKTTKK-----LVKRGITELVTPGVSINDNVL 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF--SEKE 203 + ++N+L AV ++ IA++DISTG F + D + + P+EI+F ++ Sbjct: 123 NYKENNFLAAVHFGKSACGIAFLDISTGEFLTAEGPFDYVDKLLNNFAPKEILFERGKRG 182 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + + S F T + F S S ++ ++ + FG A+ A Sbjct: 183 MFEGNFGSKFFTF-----ELDDWVFTESSSREKLLKHFETKNLKGFGVEHLKNGIIASGA 237 Query: 264 I-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 I Y+ T+ I R + + +D +LE++ +++ SLL ID +I Sbjct: 238 ILQYLDMTEHTQVGHITSLARIEEDKYVRLDKFTVRSLELIGSMNDGG-SSLLHVIDKTI 296 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 + G RL + PL D IN RL+ + +F + P I+ L D+ R +S++ Sbjct: 297 SPMGARLLKRWMVFPLKDEKPINDRLNVVEYFFRKPDFRELIEDELHRIGDLERIISKVA 356 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 +GR P+++ ++ +++ I + D P L E+L L S+ + +++D Sbjct: 357 VGRVSPREVVQLKVALQAIEPIKEACQQADNPS-LNRIGEQLN-LCISIRDRIEKEINND 414 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P GG ++DG D LDE R + K + +Q + +E T I +LKI +N+ GY+ Sbjct: 415 PPLLINKGGVIKDGVDTELDELRQIAYSGKDYLLKIQQRESELTGIPSLKIAYNSVFGYY 474 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IEV + + KD + +I +QT+ N R+ T EL + E +I A + L++E + Sbjct: 475 IEVRN-----VHKD-KVPQEWIRKQTLVNAERYITQELKEYEEKILGAEDKILVLETRLY 528 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 L A+ E ++ + IA ID ++ A +AKE NY RP+I+++ ++ GRHP++ Sbjct: 529 TELVQALSEFIPAIQINANQIARIDCLLSFANVAKENNYIRPVIEDNDVLDIRQGRHPVI 588 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 EK L + +IAND L D + ++ ++TGPNM GKS LRQ ALI ++AQ+GS+ Sbjct: 589 EKQLP--IGEKYIANDVLL----DNATQQVIIITGPNMAGKSALLRQTALITLLAQIGSF 642 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA AHIG+VDK+F+RVG++DN++ G STFMVEM E + ILN +++S V+ DE+GRGT Sbjct: 643 VPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEASDILNNISSRSLVLFDELGRGT 702 Query: 743 ATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 +T DG+SIAWA +EY+HE + R L ATH+HEL ++ KS KR N + V + + +I Sbjct: 703 STYDGISIAWAIVEYIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEVDNKVI 762 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 FL K+ G ++HS+GI V K+AG+P +++ RA +ILK E N++ P + Sbjct: 763 FLRKLERGGSEHSFGIHVAKMAGMPKSIVKRANEILKQLES---DNRQQGISGKPLAEVS 819 Query: 861 ESKNNLSKNDKLFVEKIKC--------LNLDEMSPLTALKTLYAVK 898 E++ + + + I C L+++ ++P+ AL L +K Sbjct: 820 ENRGGMQLSFFQLDDPILCQIRDEILHLDVNNLTPIEALNKLNDIK 865 >gi|167563311|ref|ZP_02356227.1| DNA mismatch repair protein [Burkholderia oklahomensis EO147] Length = 869 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 308/886 (34%), Positives = 466/886 (52%), Gaps = 42/886 (4%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY+ IK+ +PD+LVFYRMGDFYELFF+DA A+R L +TLT+RG G I M GVP Sbjct: 1 MMQQYLRIKADHPDTLVFYRMGDFYELFFEDAEKAARLLDLTLTQRGASAGTPIKMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H Y+ KL+K G AICEQI P +K V R VVR+VTPGTLT+ LLS Sbjct: 61 HHAIEQYLAKLVKFGESAAICEQIGDPAT-----SKGPVERKVVRVVTPGTLTDAALLSD 115 Query: 148 TDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 +L+A+ + + +AW+++++G +++ D+L + + RI P E++ ++ Sbjct: 116 KSDVFLLALCLGHNKRGVASNIGLAWLNLASGALRLAEIAPDQLGAALERIRPAELLAAD 175 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 + +S+ +G + P FD + R+ D ++ ++D FG+ + AA Sbjct: 176 GAI-----ESVPAGMGAITRV-PAWHFDIASGTQRLCDQLDVASLDGFGAQALTSACGAA 229 Query: 262 AAIS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 A+ Y TQ + + E+ + +D + R NLE+ TL G+ +L +D Sbjct: 230 GALLIYAAATQGQQLRHVRSLKVENESEYIGLDPSTRRNLELTETLRGTESPTLYSLLDT 289 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPI--LINPIQKILKSSPDVPRSL 378 T G RL + P S R +I + P ++ ++ L+ DV R Sbjct: 290 CCTAMGSRLLRHWLHHPPRASVAAQARHQAIGALLDAPANASLDSLRSALRQIADVERIT 349 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEE-LRGAVEKLKKLPQSLEKTLSS 437 RL + P+D++ +RD + + L + P G +E + P L+ Sbjct: 350 GRLALLSARPRDLSSLRDTF-AALPALRERVAEIAPNAPALGRLEASLEPPAGCLDLLAR 408 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 ++ + RDGG + G DA LDE R + + + + L+ + T I NL++++N Sbjct: 409 AIAAEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLETRERARTGISNLRVEYNK 468 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 G++IEVT + D + RQT+ N R+ T EL E++ +A AL Sbjct: 469 VHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTFEDKALSAQERALAR 522 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E ++ + A++ E + +A +D+ A A A+ ++ P + + G Sbjct: 523 ERALYDGVLQALLPHIEGCQRVASGLAELDLLSAFAERARTLDWVAPEFTDEIGIEIDQG 582 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE ++Q FIANDC L+ D+ KL L+TGPNMGGKSTF+RQ ALI +MA Sbjct: 583 RHPVVEAQVEQ-----FIANDCALN--TDR---KLLLITGPNMGGKSTFMRQTALIALMA 632 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+ILN AT QS V++DE Sbjct: 633 YVGSYVPAKAARFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILNDATPQSLVLMDE 692 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGT+T DGL++AWA +L NRC L ATH+ ELT L + N L + Sbjct: 693 IGRGTSTFDGLALAWAIARHLLSHNRCYTLFATHYFELTQLPAEFPQAANVHLSAVEHGH 752 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN---QKDMRLYY 854 GI+FLH V G A+ SYG+QV +LAG+P VI A L E+ Q D+ Sbjct: 753 GIVFLHAVEEGPANQSYGLQVAQLAGVPAPVIRAARKHLAHLEQQSAAQATPQLDLFAAQ 812 Query: 855 PEIQTKESKNN-LSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 P + E + + +E++ L+ D++ P AL LY + A Sbjct: 813 PSVDEPEYDDEPPAATPHPALERLLGLDPDDLKPRDALDLLYELHA 858 >gi|256844992|ref|ZP_05550450.1| DNA mismatch repair protein MutS [Fusobacterium sp. 3_1_36A2] gi|256718551|gb|EEU32106.1| DNA mismatch repair protein MutS [Fusobacterium sp. 3_1_36A2] Length = 896 Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust. Identities = 311/892 (34%), Positives = 519/892 (58%), Gaps = 39/892 (4%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TP+M+QY +IK + ++ +R+GDFYE+FF+DA +AS+ LG+TLTKR K G+D+ Sbjct: 20 MSADTPLMQQYKKIKKDYQNEILMFRLGDFYEMFFEDAKIASKELGLTLTKRNKEKGQDV 79 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 P+ GVP H+ YI KL++ G+ IAIC+Q+E P A +V+R V R++TPGT+ + Sbjct: 80 PLAGVPYHSVASYIAKLVEKGYSIAICDQVEDPKSAT-----GIVKREVTRVITPGTIID 134 Query: 142 DQLLSPTDSNYLMAVARIRTE--WAIAWIDISTG---IFKISTSNH-DRLISDIMRIDPR 195 L ++NY+ V TE AIA+ DI+TG +F+I N ++ ++++ +I Sbjct: 135 VDFLDKNNNNYIACVKINTTESIAAIAYADITTGEFSVFEIKGKNFFEKALAEMNKIQAS 194 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ- 254 EI+ EK +++EY +F+ + + + + +E+ I Y+NI +++ F S+ Sbjct: 195 EILLDEK--TYSEYIEIFKEKISFSGVKFTEVSNVKKTENFITSYFNIISIEVFSLKSKD 252 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSL 314 + + +A + YI + Q N+ E +I + + ++ + ++NL ++ + +L Sbjct: 253 LAISTSANLLHYIDELQKGNELPFSKIEYRNIDNIMELNISTQNNLNLVPKRNEEARGTL 312 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D +T G R + I +P D KI R +++F + +L +++ LK DV Sbjct: 313 LGVLDNCVTSVGSRELKKIIKNPFLDIEKIKQRQFYVDYFYNDVLLRENVREHLKDIYDV 372 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R ++ G KD+ ++D IR + L ++ +E++ ++ K+ + Sbjct: 373 ERIAGKIIYGTENGKDLLSLKDSIRKSLETYRLLKEH---QEIKNLLDIDVKILLEIYNK 429 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + ++S + P R+GG ++DG ++ LDE R + K I ++ + E T IK LKIK Sbjct: 430 IELIISVEAPFSVREGGIIKDGYNSELDELRKISKLGKDFILEIEQRERERTGIKGLKIK 489 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GYFIEVT ++ ++ +D +I +QT+ N R+ +L + E ++ A + Sbjct: 490 YNKVFGYFIEVTKANEHLVPED------YIRKQTLVNSERYIVPDLKEYEEKVITAKSKI 543 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 +E E F+ L++ I E +SL + IA +DI A +A + +Y +P ID+ + Sbjct: 544 EALEYELFKQLTSEIKEHIDSLYKLANRIANLDIVSNFAHIATKNSYVKPEIDDGDILEI 603 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 K GRHPIVE + S ++ ND L +DKN+ L +LTGPNM GKST+++Q AL + Sbjct: 604 KGGRHPIVETLI---PSGTYVKNDIVL---DDKNN--LIILTGPNMSGKSTYMKQVALNI 655 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMA +GSYV A YA + IVDK+F+RVG++D+L +G+STFM+EM E ASILN AT +SF++ Sbjct: 656 IMAHIGSYVAADYAKVPIVDKIFTRVGASDDLLTGQSTFMLEMTEVASILNSATKKSFIV 715 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDEIGRGT+T DG+SIA A EY+H + + ATH+HELT+L K L+R N ++V + Sbjct: 716 LDEIGRGTSTYDGISIATAITEYIHNVIGAKTIFATHYHELTELEKELERAINFRVEVKE 775 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE---KLYHHNQK--D 849 + ++FL +++ G AD SYGI+V +L+G+P V++R+ ILK E L + K Sbjct: 776 DGKNVVFLREIVKGGADKSYGIEVARLSGVPKEVLNRSRKILKKLETRKNLIENKIKAEQ 835 Query: 850 MRLYYPEIQTKESKNN---LSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 M L+ + + LS+N+ +E +K ++L+ +SPL +L L +K Sbjct: 836 MMLFGSGFEEDFEEEETEILSENENKVLELLKNMDLNSLSPLESLLKLNELK 887 >gi|254252001|ref|ZP_04945319.1| Mismatch repair ATPase [Burkholderia dolosa AUO158] gi|124894610|gb|EAY68490.1| Mismatch repair ATPase [Burkholderia dolosa AUO158] Length = 885 Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust. Identities = 312/901 (34%), Positives = 469/901 (52%), Gaps = 54/901 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E + TPMM+QY+ IK+ +PD+LVFYRMGDFYELFF+DA A+R L +TLT+RG G Sbjct: 7 EAFAAHTPMMQQYLRIKADHPDTLVFYRMGDFYELFFEDAERAARLLDLTLTQRGASAGN 66 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 I M GVP H Y+ KL+K+G +AICEQI P +K V R VVR+VTPGTL Sbjct: 67 PIKMAGVPHHAVEQYLAKLVKMGESVAICEQIGDPAT-----SKGPVERKVVRVVTPGTL 121 Query: 140 TEDQLLSPTDSNYLMAVAR------IRTEWAIAWIDISTGIFKISTSNHDRLISDIMRID 193 T+ LLS + YL+A+ + +AW+++++G +++ ++L + + RI Sbjct: 122 TDAALLSDKNDVYLLAMCTGHNKRGVVVNIGLAWLNLASGALRLAEIEPEQLGAALERIR 181 Query: 194 PREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS 253 P EI+ ++ + T+ V P FD + R+ D ++ ++D FG+ S Sbjct: 182 PAEILTADGTTDTVPAGA--GTIKRV----PAWHFDIASGTQRLCDQLDVASLDGFGAHS 235 Query: 254 QVEKTAAAAAISYIKK-TQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 AA A+ TQ + + E+ + +D A R NLE+ TL G+ Sbjct: 236 LTSACGAAGALLLYAAATQGQQLRHVRSLKVENETEYIGLDPATRRNLELTETLRGTESP 295 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPI--LINPIQKILKS 370 +L +D T G RL + P S +R +I + P ++ ++ L+ Sbjct: 296 TLYSLLDTCCTTMGSRLLRHWLHHPPRASVAAQSRQQAIGALLDAPADASLDALRSALRQ 355 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL--- 427 DV R RL + P+D++ +RD L + E + + LK++ Sbjct: 356 IADVERITGRLALLSARPRDLSSLRD------TFAALPALRERIEAIAANADALKRIHTA 409 Query: 428 ---PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAE 484 P L+S ++ + RDGG + G DA LDE R + + + + L+ + Sbjct: 410 LVPPAECLDLLTSAIAPEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLEARERA 469 Query: 485 ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLE 544 T I NL++++N G++IEVT + D + RQT+ N R+ T EL E Sbjct: 470 RTGIANLRVEYNKVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTFE 523 Query: 545 NRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP 604 ++ +A AL E ++ + A++ + +A +D+ A A A+ ++ P Sbjct: 524 DKALSAQERALSRERSLYDGVLQALLPFIPECQRVASALAELDVLAAFAERARALDWVAP 583 Query: 605 IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 + ++ GRHP+VE ++Q FIANDC KL L+TGPNMGGKS Sbjct: 584 TFTDDVGIEIEQGRHPVVEAQVEQ-----FIANDCRFG-----PERKLLLITGPNMGGKS 633 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 TF+RQ ALI +MA +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+IL Sbjct: 634 TFMRQTALIALMAYVGSYVPAKSARFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAIL 693 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR 784 N AT QS V++DEIGRGT+T DGL++AWA +L N C L ATH+ ELT L + Sbjct: 694 NDATPQSLVLMDEIGRGTSTFDGLALAWAIARHLLAHNGCYTLFATHYFELTQLPAEFPQ 753 Query: 785 FHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL-- 842 N L + GI+FLH V G A+ SYG+QV +LAG+P VI A L E+ Sbjct: 754 AANVHLSAVEHGHGIVFLHAVNEGPANQSYGLQVAQLAGVPAPVIRAARKHLAYLEQQSA 813 Query: 843 -YHHNQKDMRLYYPEIQTK-ESKNNLSKNDKLF--VEKIKCLNLDEMSPLTALKTLYAVK 898 H Q D+ P + E + + D +EK++ ++ D++ P AL LY ++ Sbjct: 814 SQHTPQLDLFSAPPAMPDDLECADAPAPADTPHPALEKLRDIDPDDLKPRDALDLLYELR 873 Query: 899 A 899 A Sbjct: 874 A 874 >gi|297621573|ref|YP_003709710.1| DNA mismatch repair protein mutS [Waddlia chondrophila WSU 86-1044] gi|297376874|gb|ADI38704.1| DNA mismatch repair protein mutS [Waddlia chondrophila WSU 86-1044] Length = 841 Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust. Identities = 308/824 (37%), Positives = 458/824 (55%), Gaps = 32/824 (3%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM Q+ K +L+F+RMGDFYE F+DDA++ ++ L +TLT R ++IPM G Sbjct: 8 TPMMAQWHACKKKAGTALLFFRMGDFYEAFYDDAIVLAKELELTLTTR-----QEIPMAG 62 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP HT + YI +L+ G RIA+ EQ P + +K LV R+V R+VTPGTL LL Sbjct: 63 VPHHTCDTYIDRLVAKGFRIAVAEQTSDP-----KTSKGLVERDVTRIVTPGTLVNSSLL 117 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSEK-E 203 S +NY +V ++ + +A++D++T F++ + L ++ R+ P E++ S+K Sbjct: 118 SENANNYFASVTQVGSVLGLAFLDLTTADFRVVEFESEQELQGELYRLQPSELLTSKKFS 177 Query: 204 LSHAEY-KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK-TAAA 261 HA L +L + + + F+H I+ + + + T+D FG A+ Sbjct: 178 DKHALLIADLQHSLNLLINTEDDWRFEHQITTEFLISHLKVHTLDGFGLKGMAAGINASG 237 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQSLLKTIDY 320 A + Y++ T ++ I + +D ++NLE+ R+L G+R+ +LL +D Sbjct: 238 ALLHYLRDTLNLSIDHINTISTYSTNEYMTLDRMTQTNLELTRSLQDGTRKHTLLSILDQ 297 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGRL + + PL I R D++ FI+ + ++ L+ D+ R + + Sbjct: 298 TCTPMGGRLILQWLKRPLLCMKTIQARQDAVQSFIERDWTHDQLKASLEDVRDIERLMMK 357 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEK-LKKLPQSLEKTLSSML 439 + PKDIA +R I I +L + L EK L LP+ L +++ L Sbjct: 358 VSANYASPKDIAALRHSIEPLGKIKSLLREPAAASSLIQTHEKQLNPLPE-LISLIANAL 416 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 D+ P DG R G LDE R + SK + + Q K EE IKNLK+ N Sbjct: 417 VDEPPQKLSDGNIFRKGFHQELDEIREISANSKSWLNNYQNKLREELDIKNLKVGFNRMF 476 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IEV+ A + + E RQT+ N RF T +L + E ++ A IE Sbjct: 477 GYYIEVSKGQAGKVPESFE------RRQTLVNAERFITKDLKEYEQKVLTAEEKISSIEQ 530 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F+ L + ++ + +Q +AIID ALA A+ Y RP ID S + +GRH Sbjct: 531 ELFQQLRTEVTRYADIVIKTAQSLAIIDCLQALAEAARLHGYQRPEIDQSQRLEITEGRH 590 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P++E ++ F+ ND L D + +L L+TGPNM GKST++RQ ALI IMAQ+ Sbjct: 591 PVIEAV---NMNEKFVPNDTLL----DDENNRLLLITGPNMAGKSTYIRQVALITIMAQI 643 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPA AHIG+VDK+F+R+G++D+L+ G+STFMVEM ETA+ILN AT++S VILDEIG Sbjct: 644 GSFVPAKTAHIGLVDKVFTRIGASDDLSRGQSTFMVEMTETANILNNATDRSLVILDEIG 703 Query: 740 RGTATLDGLSIAWATIEYL--HETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 RGT+T DG+SIAW+ E+L E + R L ATH+ ELT L + + N + V +S + Sbjct: 704 RGTSTYDGISIAWSVAEFLLTEEGSTARTLFATHYCELTKLEEKIPGAVNYNVAVHESED 763 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 IIFL K++ G D SYGI V +LAGLP VI RA +IL E+ Sbjct: 764 SIIFLRKIVKGGTDKSYGIHVARLAGLPLPVIERAKEILIHLEE 807 >gi|15639319|ref|NP_218768.1| DNA mismatch repair protein MutS [Treponema pallidum subsp. pallidum str. Nichols] gi|189025561|ref|YP_001933333.1| DNA mismatch repair protein MutS [Treponema pallidum subsp. pallidum SS14] gi|6093453|sp|O83348|MUTS_TREPA RecName: Full=DNA mismatch repair protein mutS gi|238689318|sp|B2S2S5|MUTS_TREPS RecName: Full=DNA mismatch repair protein mutS gi|3322604|gb|AAC65315.1| DNA mismatch repair protein (mutS) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018136|gb|ACD70754.1| DNA mismatch repair protein MutS [Treponema pallidum subsp. pallidum SS14] gi|291059719|gb|ADD72454.1| DNA mismatch repair protein MutS [Treponema pallidum subsp. pallidum str. Chicago] Length = 900 Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust. Identities = 317/920 (34%), Positives = 487/920 (52%), Gaps = 58/920 (6%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L S TP+MRQY I++ +PD+++F+R+GDFYE+F DAL S LG+TLTKR Sbjct: 3 SLASDTPLMRQYHAIRAQHPDAVLFFRLGDFYEMFDSDALHVSTLLGLTLTKR-----NG 57 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 PMCGVPVHTA +I +L+K G ++A+CEQ+ P+ + L +R V+ +++PGT Sbjct: 58 TPMCGVPVHTARTHIARLLKHGKKVALCEQVSHPVPGE------LTQRKVIEIISPGTAV 111 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST----SNHDRLISDIMRIDPRE 196 ED LS S YL V A +++++STG F I++ D L + R+ P E Sbjct: 112 EDDFLSQGFSQYLATVCASDATVAFSYLEVSTGAFFITSFPRAEAADALQKEFGRVQPSE 171 Query: 197 IIFSEKELSH----AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSF 252 ++ S L A SL+ L V + F+ +++R+ + +D Sbjct: 172 VLLSASVLRSLPELAAILSLYPRL--VRTTGADALFNPEHTKNRLHHCFRTRNLDCLTLL 229 Query: 253 SQVEKTAAAAA-ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS-R 310 AAA A I+Y+++T + R I + ID A R NLEIL+ L S Sbjct: 230 PHSPDLAAAGALIAYLEETTRHPLSHVSAITRYHIHDFVEIDDATRKNLEILQNLHDSTH 289 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 SL +T++Y+ T G RL + PL +I RL ++ FF P ++ ++ L Sbjct: 290 AHSLFETLNYTHTAMGTRLLRYWLHHPLRSQEEIQKRLSAVVFFHHRPHILKTLRATLSC 349 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEEL---RGAVEKLKKL 427 DV R ++R+ + + +D+ +++ +R+ + +L ++ P +L G L++L Sbjct: 350 VRDVERLVARVALEKAHGRDLLALKESLRAILTFRSLERESPFPPDLLPSEGDTPVLQEL 409 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 LE+++ +D P DG ++ G ASLDE +RD + I+ + E T Sbjct: 410 YGLLEQSIK----EDCPVTLSDGNLIKRGFSASLDELHRVRDNANEILKQYLAEERERTG 465 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 I LK+K+N LG+F+EV+ S + FI R+++SN RFTT +L +LE ++ Sbjct: 466 IGTLKMKYNRMLGHFLEVSKGHLSAVPA------HFIRRRSLSNADRFTTEQLSELEAKL 519 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 A + E E F + + ++ L + +A +D+ + A A + + +P+ Sbjct: 520 ARAREGLVSFEQELFADIRRTVCSHTQLLRTNAARVAQLDVLQSFAHAALQHGWSQPVFI 579 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 + GRHP+VE L S F+ ND LS + L+TGPNM GKSTFL Sbjct: 580 KDGALRITGGRHPVVELHLP---SGEFVPNDLTLSSSEHAVLPRFALITGPNMAGKSTFL 636 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ ALI ++AQ+GS+VPA A + VD++F RVG+ADNLA G STF+VEM ETA IL A Sbjct: 637 RQTALICLIAQVGSFVPAEKAELTPVDRIFCRVGAADNLARGESTFLVEMSETAHILRAA 696 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 T S VI+DE+GRGTAT DGLSIA A EYL R + L ATH+HEL+ L+ + + Sbjct: 697 TRDSLVIMDEVGRGTATEDGLSIAQAVSEYLLHHVRAKTLFATHYHELSRLAH--PQLEH 754 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE------- 840 L V +++ I+FL KV PG SYGI V +LAGLP +V++RA ++LK + Sbjct: 755 LKLDVLETDNTIVFLKKVTPGSCGSSYGIYVARLAGLPESVLARACELLKQLQQRAGSAP 814 Query: 841 KLYHHNQKDMRLYYPEIQTKESKN---------NLSKNDKLFVEKIKCLNLDEMSPLTAL 891 + ++ D + ++ + +L ++L +I LN D ++PL AL Sbjct: 815 RASAAHEADAVAQTEAVHAHKAASKPCAQRVSADLFTQEELIGAEIASLNPDAITPLEAL 874 Query: 892 KTLYAVKAWTLEKYSTDEDS 911 TL A +L +T + S Sbjct: 875 -TLIARWKRSLRGSATQQSS 893 >gi|255693596|ref|ZP_05417271.1| DNA mismatch repair protein MutS [Bacteroides finegoldii DSM 17565] gi|260620662|gb|EEX43533.1| DNA mismatch repair protein MutS [Bacteroides finegoldii DSM 17565] Length = 905 Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust. Identities = 301/886 (33%), Positives = 491/886 (55%), Gaps = 41/886 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+Q++++K+ +PD+++ +R GDFYE + DA++AS LGITLTKR GK I M G Sbjct: 42 TPMMKQFLDLKAQHPDAVMLFRCGDFYETYSTDAIVASEILGITLTKRANGKGKTIEMAG 101 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KL++ G R+AIC+Q+E P KK LV+R + LVTPG D +L Sbjct: 102 FPHHALDTYLPKLVRAGKRVAICDQLEDPKMTKK-----LVKRGITELVTPGVSINDNVL 156 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF--SEKE 203 + ++N+L AV + +A++DISTG F + D + + P+EI+F ++ Sbjct: 157 NYKENNFLAAVHFGKASCGVAFLDISTGEFLTAEGPFDYVDKLLNNFGPKEILFERGKRL 216 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + + S F T + F + + ++ ++ + FG A+ A Sbjct: 217 MFEGNFGSKFFTF-----ELDDWVFTETTAREKLLKHFETKNLKGFGVEHLKNGIIASGA 271 Query: 264 I-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 I Y+ TQ I R + + +D +LE++ ++ SLL ID +I Sbjct: 272 ILQYLTMTQHTQIGHITSLSRIEEDKYVRLDKFTVRSLELIGNMNDG-GSSLLNVIDRTI 330 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 + G RL + PL D I+ RL+ + +F + P I++ L D+ R +S++ Sbjct: 331 SPMGARLLKRWMVFPLKDKKPIDERLNVVEYFFRQPDFKAVIEEQLHLIGDLERIISKVA 390 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 +GR P+++ ++ +++ I + L L E+L L ++ ++ + +D Sbjct: 391 VGRVSPREVVQLKVALQA-IEPIKLACIQADNASLNQIGEQLN-LCVTIRDRIAKEIKND 448 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P GG ++DG +A LDE R + K + +Q + +E T I +LK+ +NN GY+ Sbjct: 449 PPLAVNKGGVIQDGVNADLDELRRISYSGKDYLLQIQQRESELTGIPSLKVAYNNVFGYY 508 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IEV + + K+ +I +QT+ N R+ T EL + E +I A + L++E + + Sbjct: 509 IEVRNVHKDKVPKE------WIRKQTLVNAERYITQELKEYEEKILGAEDKILILETQLY 562 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 L A++E + + IA +D ++ A +A+E Y RPII+++ ++ GRHP++ Sbjct: 563 TDLVQALMEFIPQIQINANQIARLDCLLSFANVARENRYIRPIIEDNDVLDIRQGRHPVI 622 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 EK L + +IAND L D ++ ++ ++TGPNM GKS LRQ ALI ++AQ+GS+ Sbjct: 623 EKQLP--IGEKYIANDVML----DSDTQQIIIITGPNMAGKSALLRQTALITLLAQIGSF 676 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA AHIG+VDK+F+RVG++DN++ G STFMVEM E A ILN +++S V+ DE+GRGT Sbjct: 677 VPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNVSSRSLVLFDELGRGT 736 Query: 743 ATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 +T DG+SIAWA +EY+HE + R L ATH+HEL ++ KS KR N + V + + +I Sbjct: 737 STYDGISIAWAIVEYIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEVDNKVI 796 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 FL K+ G ++HS+GI V K+AG+P +++ RA +ILK E N++ P + Sbjct: 797 FLRKLERGGSEHSFGIHVAKMAGMPKSIVKRANEILKQLES---DNRQQGIAGKPLAEVS 853 Query: 861 ESKNNLSKNDKLFVEKIKC------LNLD--EMSPLTALKTLYAVK 898 E++ + + + I C LNLD ++P+ AL L +K Sbjct: 854 ENRGGMQLSFFQLDDPILCQIRDEILNLDVNNLTPIEALNKLNDIK 899 >gi|194336140|ref|YP_002017934.1| DNA mismatch repair protein MutS [Pelodictyon phaeoclathratiforme BU-1] gi|194308617|gb|ACF43317.1| DNA mismatch repair protein MutS [Pelodictyon phaeoclathratiforme BU-1] Length = 872 Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust. Identities = 310/880 (35%), Positives = 490/880 (55%), Gaps = 46/880 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K +PMMRQY+E+K PD L+ +R+GDFYE FFDDA+ S L I LTKR +IP Sbjct: 10 KEHSPMMRQYLEVKERYPDFLLLFRVGDFYETFFDDAVTVSAALNIVLTKRTA----EIP 65 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M G P H + YI KL+K G ++A+C+Q+E P +AK +VRR + ++TPG D Sbjct: 66 MAGFPHHASEGYIAKLVKKGFKVAVCDQVEDPADAK-----GIVRREITDIITPGITYSD 120 Query: 143 QLLSPTDSNYLMAVARI---RTEWA-IAWIDISTGIFKISTSNHDRLISDIMRIDPREII 198 ++L +NYL AVA + RT A +A+ID++T FKI++ + + L ++ + P E++ Sbjct: 121 KVLDDCHNNYLCAVAFLKEGRTLLAGVAFIDVTTAEFKIASLHIEELKDFVLSLHPSEVL 180 Query: 199 FS--EKELSHAEYKSLF-ETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQ 254 S EKE S K+L ETL + F ++ ++ + ++ FG ++ Sbjct: 181 VSSAEKERSELLKKALSSETL---VTELDSWMFSEDQAQEVLSRQFKTHSLKGFGIDGNR 237 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQS 313 + AAA + YI++T+ I + +D + NLEI+ ++ G++ S Sbjct: 238 AGRVAAAVILQYIEETRQNRLHYITRIGELHSAEYMTLDLQTKRNLEIISSMQDGTQNGS 297 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL+ ID + G RL + PL +I RLD++ + + + + L + D Sbjct: 298 LLQVIDRTRNPMGARLLRRWLQRPLKRVDEIRMRLDAVGELSECREMREALSEQLSAIND 357 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R L+R+ R P+++ + + S I IL L+ L LK LP+ L Sbjct: 358 LERCLARIATFRTIPREVRQLGLSL-SAIPILQELLREAGSARLIALASNLKPLPE-LAA 415 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 ++ + + RDGG++R G A LDE R++ +K + +Q + T I +LK+ Sbjct: 416 SIEQAIDPESGASMRDGGYIRTGYHAELDELRTIASTAKDRLLQIQQEERAATTISSLKV 475 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GY+IE++ ++ + E K QT+ N R+T L + E +I N+ Sbjct: 476 SFNKVFGYYIEISRANIDKVPAYYEKK------QTLVNAERYTIPALKEYEEKILNSEEK 529 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + L+E + F L I E + ++ + +IA ID + A+ A E YC+P I Sbjct: 530 SFLLEAQLFHDLCLLIAENASAIQENAALIAEIDSLCSFALCASEYGYCKPEIMTHEKLA 589 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + GRHP++E+ + + P++ NDC ++K ++ ++TGPNM GKS+FLRQ LI Sbjct: 590 IVGGRHPVLERMMSAED--PYVPNDCHF---DEKQ--QMLIITGPNMAGKSSFLRQTGLI 642 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 V++AQ GS+VPA A IG+VD++F+RVG++DNLASG STF+VEM E ASILN AT++S + Sbjct: 643 VLLAQAGSFVPAERAEIGLVDRIFTRVGASDNLASGESTFLVEMNEAASILNNATSKSLL 702 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 +LDEIGRGT+T DG+SIAW+ EY+ + R L ATH+HEL +L L N V Sbjct: 703 LLDEIGRGTSTFDGMSIAWSMSEYICRSIGARTLFATHYHELAELESRLPGVVNYNATVV 762 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 ++ + +IFL K+I G D+SYGI+V K+AG+P VISRA +IL EK +D+++ Sbjct: 763 ETADSVIFLRKIIRGSTDNSYGIEVAKMAGMPAEVISRAKEILAGMEK------RDIQIP 816 Query: 854 Y---PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTA 890 P+I++ + + ++D ++ L+LD ++PL A Sbjct: 817 QNRPPKIKSMQI-SLFEESDNQLRNAVEALDLDRLTPLDA 855 >gi|167570483|ref|ZP_02363357.1| DNA mismatch repair protein [Burkholderia oklahomensis C6786] Length = 869 Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust. Identities = 308/886 (34%), Positives = 466/886 (52%), Gaps = 42/886 (4%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY+ IK+ +PD+LVFYRMGDFYELFF+DA A+R L +TLT+RG G I M GVP Sbjct: 1 MMQQYLRIKADHPDTLVFYRMGDFYELFFEDAEKAARLLDLTLTQRGASAGTPIKMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H Y+ KL+K G AICEQI P +K V R VVR+VTPGTLT+ LLS Sbjct: 61 HHAIEQYLAKLVKFGESAAICEQIGDPAT-----SKGPVERKVVRVVTPGTLTDAALLSD 115 Query: 148 TDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 +L+A+ + + +AW+++++G +++ D+L + + RI P E++ ++ Sbjct: 116 KSDVFLLALCLGHNKRGVASNIGLAWLNLASGALRLAEIAPDQLGAALERIRPAELLAAD 175 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 + +S+ +G + P FD + R+ D ++ ++D FG+ + AA Sbjct: 176 GAI-----ESVPAGMGAITRV-PAWHFDIASGTQRLCDQLDVASLDGFGAQALTSACGAA 229 Query: 262 AAIS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 A+ Y TQ + + E+ + +D + R NLE+ TL G+ +L +D Sbjct: 230 GALLIYAAATQGQQLRHVRSLKVENESEYIGLDPSTRRNLELTETLRGTESPTLYSLLDT 289 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPI--LINPIQKILKSSPDVPRSL 378 T G RL + P S R +I + P ++ ++ L+ DV R Sbjct: 290 CCTAMGSRLLRHWLHHPPRASVAAQARHQAIGALLDAPANASLDNLRSALRQIADVERIT 349 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEE-LRGAVEKLKKLPQSLEKTLSS 437 RL + P+D++ +RD + + L + P G +E + P L+ Sbjct: 350 GRLALLSARPRDLSSLRDTF-AALPALRERVAEIAPNAPALGRLEASLEPPAGCLDLLAR 408 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 ++ + RDGG + G DA LDE R + + + + L+ + T I NL++++N Sbjct: 409 AIAAEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLETRERARTGISNLRVEYNK 468 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 G++IEVT + D + RQT+ N R+ T EL E++ +A AL Sbjct: 469 VHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTFEDKALSAQERALAR 522 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E ++ + A++ E + +A +D+ A A A+ ++ P + + G Sbjct: 523 ERALYDGVLQALLPHIEGCQRVASGLAELDLLSAFAERARTLDWVAPEFTDEIGIEIDQG 582 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE ++Q FIANDC L+ D+ KL L+TGPNMGGKSTF+RQ ALI +MA Sbjct: 583 RHPVVEAQVEQ-----FIANDCALN--TDR---KLLLITGPNMGGKSTFMRQTALIALMA 632 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+ILN AT QS V++DE Sbjct: 633 YVGSYVPAKAARFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILNDATPQSLVLMDE 692 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGT+T DGL++AWA +L NRC L ATH+ ELT L + N L + Sbjct: 693 IGRGTSTFDGLALAWAIARHLLSHNRCYTLFATHYFELTQLPAEFPQAANVHLSAVEHGH 752 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN---QKDMRLYY 854 GI+FLH V G A+ SYG+QV +LAG+P VI A L E+ Q D+ Sbjct: 753 GIVFLHAVEEGPANQSYGLQVAQLAGVPAPVIRAARKHLAHLEQQSAAQATPQLDLFAAQ 812 Query: 855 PEIQTKESKNN-LSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 P + E + + +E++ L+ D++ P AL LY + A Sbjct: 813 PSVDEPEYDDEPPAATPHPALERLLGLDPDDLKPRDALDLLYELHA 858 >gi|168186343|ref|ZP_02620978.1| DNA mismatch repair protein MutS [Clostridium botulinum C str. Eklund] gi|169295697|gb|EDS77830.1| DNA mismatch repair protein MutS [Clostridium botulinum C str. Eklund] Length = 908 Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust. Identities = 303/833 (36%), Positives = 484/833 (58%), Gaps = 53/833 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+E+K N D ++F+R+GDFYE+FF+DA A+R L + LT R L PMCG Sbjct: 4 TPMMKQYLEVKERNKDCILFFRLGDFYEMFFEDAETAARELELVLTGRDCGLENRAPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H AN YI +LI G+++AICEQ+E P +AK +V+R+V+++ TPGT ++ L Sbjct: 64 IPYHAANTYISRLITKGYKVAICEQLEDPSKAK-----GIVKRDVIKIYTPGTYSDSSFL 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEKE 203 T +NYLM++ ++A+ D+STG F+ + N ++ +I + PREI+ + Sbjct: 119 EETKNNYLMSLYLENDLVSMAFADVSTGDFQCTYVKYNESSILDEISKFMPREIVIIDSI 178 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSIS---ESRIADYYNITTVDTFGSFSQVEKTAA 260 K++ E + FF + S +++ D+ ++ + T Sbjct: 179 DDSII-KAIKERFEVSFTIKNREFFYLNASLNLKNQFPDFKE-------ENYEDIVLTGC 230 Query: 261 AAAISYI---KKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLK 316 ++YI +KT +++ + Y E D S ID +R NLE+ TL S++ SLL Sbjct: 231 NGLLNYIIETQKTTLIHINKLDYYETVDYLS---IDINSRRNLELTETLRDKSKKGSLLW 287 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D + T G RL + + PL I R +++ + N L++ ++ LK D+ R Sbjct: 288 VLDKTSTAMGARLLRKWVEQPLIHKEIIENRQNAVEEILNNVPLLDDLRNALKDVYDIER 347 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE--KT 434 ++ K++ +++ I NL L + E + LK + +L+ + Sbjct: 348 LAGKISSKNVNAKELLSLKNSIG------NLPLIKKIIEYYNTNL--LKNIHVNLDCLED 399 Query: 435 LSSMLSD---DLPTFK-RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 + S+L + D P ++GG ++DG ++++DE R + IASL+ + T IK+ Sbjct: 400 IYSLLDNSILDSPALSIKEGGIIKDGYNSTIDELRMAKSHGTEWIASLEEQERNVTGIKS 459 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+K+N GY+IEVT S+ D ++R+ +QT++N RF T EL ++E++I A Sbjct: 460 LKVKYNKVFGYYIEVTKSNL-----DQVPENRYTRKQTLANCERFITPELKEVEDKILGA 514 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 + +E F + I ++ + NA+++++ ID+ +LAI+A E NY +P I Sbjct: 515 QEKLMELEYNIFIEIRELIEKEIYRIKNAAKLVSTIDVLQSLAIVALENNYSKPKIKLDG 574 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 ++K+GRHP+VE+ + + S F++ND L D +L L+TGPNM GKST++RQ Sbjct: 575 ELLIKEGRHPVVEQMIPRDS---FVSNDTIL----DNKDHQLLLITGPNMAGKSTYMRQV 627 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI +++Q+GS+VPA I I DK+F+R+G++D+LA G+STFMVEM E A+ILN ATN+ Sbjct: 628 ALITLLSQIGSFVPAKEVEIVICDKIFTRIGASDDLARGKSTFMVEMWEVANILNNATNK 687 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNA 788 S ++LDE+GRGT+T DGLSIAWA IEY+ + N + + L ATH+HELT L ++ N Sbjct: 688 SLILLDEVGRGTSTYDGLSIAWAVIEYICKNNNLKSKTLFATHYHELTSLEGKIRGVKNY 747 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 ++ V ++ IIFL K+I G AD SYGI+V KLAG+P+ V RA +IL T E+ Sbjct: 748 SISVKKVDDDIIFLRKIIEGGADESYGIEVAKLAGVPSVVTDRAKEILNTLEE 800 >gi|291557073|emb|CBL34190.1| DNA mismatch repair protein MutS [Eubacterium siraeum V10Sc8a] Length = 870 Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust. Identities = 321/909 (35%), Positives = 492/909 (54%), Gaps = 87/909 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+EIK+ D ++FYR+GDFYE+F +DA++AS+ L +TLT R PMCG Sbjct: 14 TPMMQQYVEIKANYKDYILFYRLGDFYEMFNEDAMVASKELELTLTSRA-----GTPMCG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI+KLI G ++AICEQ P +K LV R++VRLV+ GT+ E +L Sbjct: 69 VPHHSAEGYIKKLIDKGFKVAICEQTTDPALSK-----GLVERDIVRLVSAGTVIEASML 123 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIM----RIDPREIIFS 200 +NY+ + + + DISTG + + +N + DI+ + P E++F+ Sbjct: 124 EDGSNNYISCIYVGEIGTGMVFADISTGEVHAVEKANSKKTDEDIIAQFSQYTPVELLFN 183 Query: 201 EKELSHAE-YKSLFETLGNVAVAQPNVFFDHSISESRIADYYNIT-----TVDTFGSFSQ 254 + L+ + Y + G + Q D S I D IT T D G + Sbjct: 184 AEFLNRKQAYTFIRNRYGKCSAEQ---LSDEDFS---IDDVSEITAQFGGTADEIGLAGK 237 Query: 255 VEK-TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQ 312 A A + Y+ K Q + + A R NLE+ T+ SG ++ Sbjct: 238 DNALRALCALLRYLYKAQRSGAKRFVKLNVHSSGEFMQLGLATRRNLELTSTMRSGEKKG 297 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 SLL +D + T G R + I PLTD+ I R D++ I N + I+ L Sbjct: 298 SLLWVLDKTDTSMGRRKLRQCIEQPLTDTAAIIRRHDAVEALINNSAALYDIKTDLAKVY 357 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE 432 D+ R ++R+ KD+ + R IL LK+DL + +L +SL+ Sbjct: 358 DLERLMTRIIYKAANAKDVKALGATCR----ILPQ-LKSDLSQ-------ISTQLTRSLD 405 Query: 433 KTLSSM----------LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 K +S + ++D+ P +DGG++++G + LD R++ K ++A ++ + Sbjct: 406 KKISPLDDIADLVERAIADEPPALMKDGGYIKNGFNEELDRLRNITGGGKDLLAQIEQQE 465 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T IKNL++ +N GY+IEV+ + S++ DR++ +QT++N R+ T EL Sbjct: 466 KEATGIKNLRVGYNRVFGYYIEVSKGNVSMVP------DRYVRKQTLTNGERYITDELKK 519 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 +EN I A + L +E F + I ++ + + ++ +A +D+ + A+++ E NYC Sbjct: 520 IENEILGANDKILALEAAIFAEVREFIAQRLDLIQQTAESVAALDVLCSYAVVSIENNYC 579 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 RP++ N + +KDGRHP+VEK + + F ND L D S +L ++TGPNM G Sbjct: 580 RPMMANDSVIEIKDGRHPVVEKMVNE---ILFTPNDVYL----DVKSNRLMIITGPNMSG 632 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KSTF+RQ A+IV+MAQ+G +VPASYA +G+VD++F+RVG++D+L++G+STFMVEM E A+ Sbjct: 633 KSTFMRQVAVIVLMAQIGCFVPASYARLGVVDRIFTRVGASDDLSAGQSTFMVEMTEVAT 692 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYL-HETNRCRGLLATHFHELTDLSKS 781 ILN+AT S VILDEIGRGT+T DG+SIA A EY+ + C+ L ATH+HEL L Sbjct: 693 ILNEATRNSLVILDEIGRGTSTYDGVSIAKAVAEYISSKAIGCKTLFATHYHELISLENE 752 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 L N +++V S E I FLHK++ G D SYGI+V +LAGLP V RA +L EK Sbjct: 753 LDGVRNYSVKVKRSGEDIKFLHKIVEGGTDDSYGIEVARLAGLPKKVTDRAKQLLAELEK 812 Query: 842 LYHHNQKDMRLYYPEIQTKESKNNL----------SKNDKLFVEKIKCLNLDEMSPLTAL 891 P+IQ + + + + +IK L+LD+++P A Sbjct: 813 A------------PKIQRELELRAEEESESQIDFEATGRQNVIAEIKNLDLDDITPREAY 860 Query: 892 KTLYAVKAW 900 L +KA Sbjct: 861 AKLEELKAM 869 >gi|169824440|ref|YP_001692051.1| DNA mismatch repair protein [Finegoldia magna ATCC 29328] gi|238687741|sp|B0S1C1|MUTS_FINM2 RecName: Full=DNA mismatch repair protein mutS gi|167831245|dbj|BAG08161.1| DNA mismatch repair protein [Finegoldia magna ATCC 29328] Length = 856 Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust. Identities = 314/878 (35%), Positives = 493/878 (56%), Gaps = 46/878 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY EIK N D ++F+R+GDFYE+FFDDAL+AS+ L I LT+R K PMCG Sbjct: 4 TPMIKQYKEIKEQNKDCILFFRLGDFYEMFFDDALIASKELEIVLTQRDCGENKKCPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H ++ YI KL+ G+++AICEQ+E P + K LV+R ++++ TP T+ E++ Sbjct: 64 IPYHVSDVYINKLVSKGYKVAICEQLEDP-----KLVKGLVKRGIIKIYTPATVIENENS 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI----SDIMRIDPREIIFSE 201 + NYLM++++ E AI++IDISTG + + D + ++I +I P+EIIF++ Sbjct: 119 DTGNFNYLMSISKKSNEVAISYIDISTGDVSYTNTTSDDIYKIIENEISKITPKEIIFND 178 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 E S +++ V N S+I Y+ T S+ A Sbjct: 179 HEFSTNSLETIASKFSIVLTTVNNGTDSIDFINSKIT--YDNTN-------SETTNICVA 229 Query: 262 AAISYIKKTQ--MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTI 318 + Y+ + Q +V+ I + I + IDS + NLEI + L + S+ SL + Sbjct: 230 NLLKYVFRYQDDLVH---INSSRKYYINEFMEIDSNSVINLEIQKNLYTNSKNGSLFGVL 286 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 +++ T G RL + PL D +I R + + ++ L+ ++ L D+ R + Sbjct: 287 NHTKTSMGSRLLHSYLERPLMDKEEILIRQNRVEEIFEDYELLVNLENCLDGIYDLDRLI 346 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 ++L KD+ ++ I + NL N +L G EKL L + + + Sbjct: 347 AKLSYKSANAKDLIALKVSIEKIPYLKNLLNCNKKNVQLIG--EKLDDL-RDIYDLIDKS 403 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + DD P +G ++ LD+ R R K + ++ + IKNLKI N Sbjct: 404 IVDDPPVILTEGNLIKPNFSNELDQLRYNRVNGKNELVEYEMSEKDRLGIKNLKIVFNKK 463 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 LGYFI+VT S+ + + +D E RQT++N +RF T +L +E++I ++ + +E Sbjct: 464 LGYFIDVTKSNLNKVGEDYE------KRQTLTNSSRFKTKQLEAIESKILDSEDEIFELE 517 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + FE + I+E + ++ +IAIID+S +LA A NY +P I+ V + R Sbjct: 518 YKIFEDIRKIILENLSRIKKSADLIAIIDVSNSLAKCAYLNNYIKPDINTYGLIDVLESR 577 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGK--LWLLTGPNMGGKSTFLRQNALIVIM 676 HPIVE ++ Q FI ND + SGK + L+TGPNM GKST+LRQ ALI I+ Sbjct: 578 HPIVELSVGQSE---FITNDILIG------SGKNDIQLITGPNMSGKSTYLRQVALICIL 628 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 Q+GS+VPA+ A+I IVDK+F+R+GS+DNL G STFMVEM E ++I+ AT+ S ++LD Sbjct: 629 NQIGSFVPATKANISIVDKIFTRIGSSDNLFKGESTFMVEMKEMSNIIKYATSNSLLVLD 688 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DGLS+AWA +EY+ + + + L ATH+HELT+L K L N + + ++N Sbjct: 689 EIGRGTSTYDGLSLAWAIVEYISKDIKAKTLFATHYHELTELEKKLDNLINMKVDIKETN 748 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 + IIFL K+ G D SYGI+V +LAG+P T+I RA ILK +K + D+ + Sbjct: 749 DSIIFLRKITRGSTDKSYGIEVAELAGMPKTLIKRAKSILKEIDK--EDTKIDLPIADFA 806 Query: 857 IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 +Q + + K F ++IK +N++E++P+ +L+ L Sbjct: 807 VQNEMEDDKNIHELKDFKDEIKNINVNEITPIQSLQLL 844 >gi|163790798|ref|ZP_02185224.1| DNA mismatch repair protein [Carnobacterium sp. AT7] gi|159873978|gb|EDP68056.1| DNA mismatch repair protein [Carnobacterium sp. AT7] Length = 874 Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust. Identities = 311/901 (34%), Positives = 499/901 (55%), Gaps = 74/901 (8%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY+ IK+ PD+ +FYR+GDFYELF +DA+ AS+ L +TLT R ++ + IPMCG Sbjct: 8 TPMMEQYLGIKANYPDAFLFYRLGDFYELFNEDAIKASQLLEVTLTSRNRNADEPIPMCG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A YI LI+ G+++AICEQ+E P AK +V+R VV+L+TPGT + + + Sbjct: 68 VPYHAAKGYIDSLIEKGYKVAICEQVEDPKTAK-----GMVKREVVQLITPGTAMDTKSM 122 Query: 146 SPTDSNYLMAVARIRT-EWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEKE 203 +NYL AV T + +A+ D+STG K + N + ++S++M + +E++F KE Sbjct: 123 DAKTNNYLAAVMSTNTNHYYLAYADLSTGELKTTKLNSLESVMSELMSLRTKEVVF--KE 180 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + E + +T + V+ + + + N +D Sbjct: 181 ANDIELQEELKTKLGIMVSTQKELIESAEFSYLTNEIENTELIDIVKLL----------- 229 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSLLKTID 319 +SY+ TQ K +G+ ++ + S L +D ++ NLE++ ++ +G ++ +LL +D Sbjct: 230 LSYLYVTQ---KRNLGHLQKVGVYSPTNHLKMDHYSKHNLELVSSIRTGQKKGTLLWLLD 286 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T GGRL + I PL +I R +S+ I + + + L D+ R Sbjct: 287 ETKTAMGGRLLKQWIDRPLIQEKQITMRQNSVESLINHFFERTDLNEALTRVYDLERLAG 346 Query: 380 RLKIGRGEPKDIAVIRDGIRS---GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 R+ G +D+ ++ +R I I+ L K + + + +L ++P+ ++ ++ Sbjct: 347 RVAFGNVNGRDLIQLQTSLRQIPQLIEIIQLMNKGEWDQ----FIAELDQVPEVVD-LIN 401 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + +D P +DGG ++DG + LD R K+ IA L+ + T IKNLKI +N Sbjct: 402 QAIDEDAPLSIKDGGVIKDGFNEQLDVYRDAMRNGKKWIAQLEAEEKAATGIKNLKIGYN 461 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+IE+T ++ + L + R+ +QT++N RF T L + E I A ++L Sbjct: 462 RIFGYYIEITKANLANL-----PEGRYERKQTLANAERFITPALKEKEILILEAEEKSML 516 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID-NSTNFIVK 615 +E F + I + E L N ++ +A ID+ + A ++++ +Y RP++ NS + Sbjct: 517 LEYTLFTEVRETIKQYIERLQNLAKTVAAIDVLQSFATISEKYHYTRPVMTANSQEISLI 576 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 +GRHP+VEK L QQ+ ++ N ++ N+ + L+TGPNM GKST++RQ AL VI Sbjct: 577 EGRHPVVEKVLGQQT---YVPNSVEMGKENE-----ILLITGPNMSGKSTYMRQLALTVI 628 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQMG +VPA A + I D++F+R+G+AD+L +G+STFMVEM+E L A+ S ++ Sbjct: 629 MAQMGCFVPADQAKMPIFDQIFTRIGAADDLIAGQSTFMVEMMEANEALRYASKNSLILF 688 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGTAT DG+++A A IE++HE + L +TH+HELT L + L R N + + Sbjct: 689 DEIGRGTATYDGMALAEAIIEHIHEKVHAKTLFSTHYHELTVLDERLPRLTNVHVGAVEE 748 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK-----LYHHNQKDM 850 ++FLHK++PG AD SYGIQV KLAGLP+ ++SRA IL+ E+ L H Q ++ Sbjct: 749 EGELVFLHKMLPGPADKSYGIQVAKLAGLPDELLSRATVILEQLEQKEEVILNHSPQIEL 808 Query: 851 RLYYPEIQTKESKNNLSKND-------KLF----------VEKIKCLNLDEMSPLTALKT 893 E+Q N KND LF V+ ++ +NL M+PL AL Sbjct: 809 A---EEVQMPIKANQKKKNDMIDEGQLSLFGLLEDSEAEVVKAVRKMNLLTMTPLEALNC 865 Query: 894 L 894 + Sbjct: 866 I 866 >gi|218131725|ref|ZP_03460529.1| hypothetical protein BACEGG_03346 [Bacteroides eggerthii DSM 20697] gi|217986028|gb|EEC52367.1| hypothetical protein BACEGG_03346 [Bacteroides eggerthii DSM 20697] Length = 871 Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust. Identities = 305/890 (34%), Positives = 491/890 (55%), Gaps = 49/890 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+Q++++K+ +PD+++ +R GDFYE + DA++A+ LGITLTKR GK I M G Sbjct: 8 TPMMKQFLDLKAKHPDAVMLFRCGDFYETYSTDAIVAAEILGITLTKRANGKGKTIEMAG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KLI+ G R+AIC+Q+E P KK LV+R + LVTPG D +L Sbjct: 68 FPHHALDTYLPKLIRAGKRVAICDQLEDPKLTKK-----LVKRGITELVTPGVSINDNVL 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF--SEKE 203 + ++N+L AV + ++++DISTG F + D + + P+E++F + Sbjct: 123 NYRENNFLAAVHFGKGACGVSFLDISTGEFLTAEGPFDYVDKLLNNFAPKEVLFERGRRG 182 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK-----T 258 + + S F T + F + + ++ ++ + + FG VE Sbjct: 183 MFEGNFGSKFFTF-----ELDDWVFTETTAREKLLKHFEVKNLKGFG----VEHLKNGII 233 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 A+ A + Y+ TQ I R + + +D +LE++ +++ SLL I Sbjct: 234 ASGAVLQYLIMTQHTQIGHITSLARIEEDKYVRLDKFTVRSLELMGSMNDGG-SSLLNVI 292 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D +I+ G RL + PL D IN RL+ + +F + P I++ L D+ R + Sbjct: 293 DRTISPMGARLLKRWMVFPLKDVQPINERLNVVEYFFRKPDFKELIEEQLHLIGDLERII 352 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 S++ +GR P+++ ++ +++ I + D L E+L + +S+ + Sbjct: 353 SKVAVGRVSPREVVALKVALQAVEPIKEACMDAD-NASLNHIGEQLN-ICRSIRDRIDKE 410 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 +++D P GG ++ G +A LDE R + K + +Q + +E T I +LKI +NN Sbjct: 411 VNNDPPLLINKGGVIKSGVNAGLDELRQIAYSGKDYLLQVQQRESELTGIPSLKIGYNNV 470 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IEV + + KD + +I +QT+ N R+ T EL + E +I A + L++E Sbjct: 471 FGYYIEVRN-----VHKD-KVPQEWIRKQTLVNAERYITQELKEYEEKILGAEDKILVLE 524 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + + L ++ E ++ + IA +D ++ A A+E NY RP+I + + GR Sbjct: 525 TQLYTELVQSLSEFIPAIQINANQIARLDCLLSFATAARENNYIRPVISDDEVLEIHQGR 584 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP++EK L + +IAND L D ++ ++ ++TGPNM GKS LRQ ALI +MAQ Sbjct: 585 HPVIEKQLP--IGEKYIANDVML----DSSTQQIIIITGPNMAGKSALLRQTALITLMAQ 638 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA AHIG+VDK+F+RVG++DN++ G STFMVEM E A ILN +++S V+ DE+ Sbjct: 639 IGSFVPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNLSSRSLVLFDEL 698 Query: 739 GRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 GRGT+T DG+SIAWA +EY+HE R R L ATH+HEL ++ KS KR N + V + + Sbjct: 699 GRGTSTYDGISIAWAIVEYIHEHPRAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEID 758 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 +IFL K+ G ++HS+GI V K+AG+P +++ RA DILK E N++ P Sbjct: 759 NKVIFLRKLERGGSEHSFGIHVAKMAGMPKSIVKRAADILKQLET---DNRQQGVSSKPM 815 Query: 857 IQTKESKNNLSKNDKLFVEKIKC------LNLD--EMSPLTALKTLYAVK 898 + E + + + + I C LNLD ++PL AL L +K Sbjct: 816 AEVGEMRGGMQLSFFQLDDPILCQIRDEILNLDVNNLTPLEALNKLNDIK 865 >gi|317051765|ref|YP_004112881.1| DNA mismatch repair protein MutS [Desulfurispirillum indicum S5] gi|316946849|gb|ADU66325.1| DNA mismatch repair protein MutS [Desulfurispirillum indicum S5] Length = 838 Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust. Identities = 310/895 (34%), Positives = 470/895 (52%), Gaps = 94/895 (10%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQ++EIK PD+++F+RMGDFYELF +DA+LAS L ITLT R K K PM G Sbjct: 6 TPMMRQFMEIKDQYPDAMLFFRMGDFYELFGEDAVLASEILKITLTSRDKG-EKKTPMAG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H Y+ KL+K GH+ IC+Q+E P +AK +V+R V R+VTP T+ + Sbjct: 65 VPHHALEGYLYKLVKAGHKAVICDQLEDPRQAK-----GIVKRGVTRIVTPSTIIHHDGV 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 P+ N+L A+ + IA D+ST K+ SN ++L D+ R E + Sbjct: 120 DPSQHNFLAALHGDDDDICIALWDLSTASVKLLRSNREQLADDLRRYPVSEYL------- 172 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAIS 265 V D + + ++ + D F F A A + Sbjct: 173 --------------------VCRDGLLEQGQLVQAPQQSAAD-FARFEHGHAMALTMASA 211 Query: 266 YIKKTQMVNKPTIGYPEREDIQST--LFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 Y++ TQ+ T+ ED+ + L +D NLE+LR + G RE +LL +D + T Sbjct: 212 YLEGTQL---RTVRPRSIEDLSARELLLMDENTCVNLELLRNMGGGREHTLLWVLDRTRT 268 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 GGRL + + PL I RLD++ L I+ L D+ R ++R+ + Sbjct: 269 AMGGRLLRDWMRHPLYQQHAIEQRLDAVELLAGQYTLTGSIRDTLGRIHDLERLINRISL 328 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP------------QSL 431 + +P+D+ +R +R +ELR P SL Sbjct: 329 DQHKPRDLVALRQSLR-------------FTQELRLQAPHCADSPLLQSQFGNMEDFTSL 375 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 L + D+ P ++G +R G DA LD+ R +R ++ I ++ + + T I +L Sbjct: 376 LDLLDRAMCDEPPVTVKNGQVIRSGYDAHLDQLRDVRGNARDRILHMEAREKQATGISSL 435 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 KI++N GY+IEV + + + + +I +QT+ N R+ T + +LE I A Sbjct: 436 KIRYNRVFGYYIEVPKTHQNRVPAE------YIRKQTLVNAERYVTEAIKELETSILEAE 489 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + E + + +++ + + NA++ IA ID+ A +A +Y +P I Sbjct: 490 EQLIPYEESIYADICQQVLQWFDPIINAARSIACIDVLSTFAEVAVAYDYRKPRISPDPV 549 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 V+ RHP++EK S +PF+AND L + + +L ++TGPNM GKST++RQ A Sbjct: 550 LHVQGLRHPVIEKL----SVEPFVANDLVL----NTDDQQLMIITGPNMAGKSTYMRQAA 601 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 L VIMAQMG +VPA+ A IG+ D++F+RVG++DNL G+STFMVEM ETA+IL+ AT S Sbjct: 602 LAVIMAQMGCFVPATEALIGLCDRIFTRVGASDNLVEGKSTFMVEMSETANILHHATRNS 661 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNAT 789 +++DE+GRGT+T DG+SIAW+ E+L R L ATHFHELTDL + L N Sbjct: 662 LIVIDEVGRGTSTFDGISIAWSVAEHLSSQGPIGARTLFATHFHELTDLERELHGVVNFH 721 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 + + +++ + FL KV PG A SYGI+V +LA +P +VI RA++IL+ E Sbjct: 722 ILIRENHGTLHFLRKVAPGAAPKSYGIEVARLAQIPLSVIERAHEILQNLEA-------- 773 Query: 850 MRLYYPE-----IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 R Y PE + +++ + VEKI+ LNLDE +P AL+ LY +K+ Sbjct: 774 -REYSPEGRSSVVHSQDPPFLFGAVEDPLVEKIRGLNLDECTPRQALQILYELKS 827 >gi|189502159|ref|YP_001957876.1| DNA mismatch repair protein MutS [Candidatus Amoebophilus asiaticus 5a2] gi|189497600|gb|ACE06147.1| hypothetical protein Aasi_0767 [Candidatus Amoebophilus asiaticus 5a2] Length = 863 Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust. Identities = 306/883 (34%), Positives = 493/883 (55%), Gaps = 41/883 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 +++TP+M+QY EIK+ P SL+ +R+GDFYE F +DA+ S+ L I LTKR + Sbjct: 3 QATTPLMKQYNEIKAKYPGSLLLFRVGDFYETFGEDAVKTSKLLDIVLTKRANGAAAAVE 62 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 + G P H + Y+ KL+K GHR+AIC+Q+E P + K +V+R V LVTPG D Sbjct: 63 LAGFPHHALDTYLPKLVKAGHRVAICDQLEDP-----KAVKGIVKRGVTELVTPGLSFHD 117 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMR-IDPREIIFSE 201 +L +NYL ++ + IA++D+STG F ++ I +M+ P E+I S+ Sbjct: 118 AVLERRHNNYLASLYFEKELVGIAFLDVSTGEF-LTAQGKATYIDKLMQGFQPAEVIISK 176 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAA 260 K+ A +++ F + A + + ++ ++ +++ ++ FG + + A+ Sbjct: 177 KQ--RATFQA-FSKENYPSYALEDWVYQPDYAQEKLNEHFGTASIKGFGIDNLPLGVIAS 233 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 A + Y+++T+ K I R + +++D NLEIL+ SL++ +D Sbjct: 234 GAILRYLEETEHKEKKHITSIARIEEDKYVWLDKFTIRNLEILQP-QQEGGVSLIEVLDK 292 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 ++T G RL + + PL D I RLD ++ F Q+ L I + LK D+ R +S+ Sbjct: 293 TVTPMGARLMKKWLVLPLKDIQAIQRRLDIVDLFYQDTNLWGSILQELKQISDLERLISK 352 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFL--KNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 + +GR P+D+ ++ ++ + I N ++DL +L + + L + TL Sbjct: 353 VSVGRATPRDLLALQKALQHTLPIQNYLQTSEHDLLIKLSQQLHNCEYLADKIRGTLQ-- 410 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 D+ P G +R+G D+ LDE R + Q K + LQ K + T I +LKI +N Sbjct: 411 --DNPPLSLTQGDLIREGIDSELDELRKIAYQGKDYLLQLQQKEIKNTGINSLKIAYNKV 468 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY++EVT+ S + +I +QT+ N R+ T EL E +I A + L IE Sbjct: 469 FGYYLEVTNVHKSKVPAS------WIRKQTLVNAERYVTEELKTYEEKILQAESKMLEIE 522 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 ++ L ++ +E + ++++A ID + A A++ Y +PI+ N I+K+GR Sbjct: 523 QRLYQQLLDSALEFVPQILQNAKILAQIDCYLTFAQEARKHQYTKPILANHKKIIIKNGR 582 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP++E+ L S ++ ND L D + ++ ++TGPNM GKS LRQ ALIV+MAQ Sbjct: 583 HPVIEQQLSVDVS--YVPNDIYL----DNETQQVIVITGPNMAGKSALLRQVALIVLMAQ 636 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPAS A IG+VDK+F+RVG++DNLA G STFMVEM ETASI++ +++S +++DEI Sbjct: 637 IGSFVPASQAEIGLVDKIFTRVGASDNLALGESTFMVEMTETASIMHNLSDRSLIVMDEI 696 Query: 739 GRGTATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 GRGT+T DG+SIAW+ IEYLH + + L ATH+HEL LS L+R N + V + Sbjct: 697 GRGTSTYDGISIAWSIIEYLHNHPKYKAKTLFATHYHELNQLSDQLERVKNFNVAVKEVA 756 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 IIFL K+ G ++HS+GI V +LAG+P V+ RA +IL E H + ++ Sbjct: 757 GKIIFLRKLREGGSEHSFGIHVAQLAGMPTQVVERASEILGHLEHDKKHIENKAKIKTIP 816 Query: 857 IQTK-----ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 +T E+ ++ K L +K L++D ++P+ AL L Sbjct: 817 AKTYQLALFEADPDIEKAKSL----LKQLDIDTLAPIEALLKL 855 >gi|94986680|ref|YP_594613.1| DNA mismatch repair protein MutS [Lawsonia intracellularis PHE/MN1-00] gi|166232123|sp|Q1MRT4|MUTS_LAWIP RecName: Full=DNA mismatch repair protein mutS gi|94730929|emb|CAJ54292.1| Mismatch repair ATPase (MutS family) [Lawsonia intracellularis PHE/MN1-00] Length = 893 Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust. Identities = 319/908 (35%), Positives = 492/908 (54%), Gaps = 67/908 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM+ QY+ IKS PD+L+FYRMGDFYELFF+DA A+R L I LT R +PMCG Sbjct: 9 TPMLEQYLSIKSNYPDTLLFYRMGDFYELFFEDAETAARELQIALTARNPRAENPVPMCG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A+ YI +LI+ G+++A+CEQ E R +K LV+R V R+ T T TE+ L Sbjct: 69 VPWHAADSYIHQLIQKGYKVALCEQTED-----FRESKGLVQRKVTRVFTSATTTEETSL 123 Query: 146 SPTDSNYLMAVARIRTEW-------AIAWIDISTGIFK-ISTSNHDRLISDIMRIDPREI 197 P YL A+ W A W D+STG++ I L I +I P+E+ Sbjct: 124 DPKTHTYLGAMY-----WDEEVNIGAFCWADVSTGLWTGIQVKKKSELWQWIQKILPKEL 178 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQP-NVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 +F EK E + + + V P F++ + R+ + ++ G + Sbjct: 179 LFPEK----YELPATAKLIEIQFVPLPYKTHFEYPQAVKRLLQAQGVADLEALGLEKHTI 234 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE-QSL 314 A A ++Y+++TQ+ + + + DI + +D NLE+ + ++G + +L Sbjct: 235 LVQACGALVAYLEQTQLQDVNHLMPFKPLDIGKYVILDEITEKNLELFKRVNGKKGVGTL 294 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 + +D+++T GGRL ER+ P D T I + + I + +Q LK+ D+ Sbjct: 295 IHVLDHTLTPMGGRLLEERLHHPWRDITTILENQSVLEWLILYKENMKKLQDALKAIYDL 354 Query: 375 PRSLSRLKIGRGEPKDIAV----------IRDGIRSGINIL-NLFLKND------LPEEL 417 R +R+ + R PKD+ ++D + IN+ N ++ D +P L Sbjct: 355 ERLSTRIVLNRTSPKDLLALKNTLLILPRVKDALIVEINVKDNRYITIDESILSTMPTIL 414 Query: 418 RGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIAS 477 R + K + EK L L ++ P +GG + G +A LDE L + + + + Sbjct: 415 RQLLTKWDNISDYAEK-LDKALDENPPNSIVEGGLFKLGFNAELDELMDLLEHGESKLQA 473 Query: 478 LQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTT 537 L K + + LKI N GY+ E+T S+ + F+ RQT++N R+TT Sbjct: 474 LLEKEQKVNNLPRLKIGFNRVFGYYFELTKSAGT-------PPSHFVRRQTLANAERYTT 526 Query: 538 LELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAK 597 EL DLE R+ +AT +E + F+ L ++ + + +IA +D+ +LA +A Sbjct: 527 EELKDLEERLLSATEKRNTLEYKLFQKLREELVSIRPRILFMASLIAQLDLWQSLADVAI 586 Query: 598 EQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTG 657 N+ +P + + N +++GRHP++E + + F+ ND + + ++ L+TG Sbjct: 587 RHNWNKPTLLTNNNIFIREGRHPVIESIIGKSV---FVPNDLVMD-----ETRRMLLITG 638 Query: 658 PNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEM 717 PNM GKST LRQ A+I ++A MGS+VPA+ A IGI D++FSRVG++DNLA G+STFMVEM Sbjct: 639 PNMAGKSTVLRQTAIICLLAHMGSFVPATEAQIGICDRIFSRVGASDNLARGQSTFMVEM 698 Query: 718 IETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYL--HETNRCRGLLATHFHEL 775 +ETA IL QAT++S VILDEIGRGT+T DGL++AWA E L + + R L ATH+HEL Sbjct: 699 METARILRQATSRSLVILDEIGRGTSTFDGLALAWAVAEDLVCKDHDGVRTLFATHYHEL 758 Query: 776 TDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI 835 T L + L H T+ + N+ ++FL+++IPG AD SYGI+V +LAG+P +VI RA I Sbjct: 759 TALEEKLTGVHTMTIAIRHWNDELVFLYRLIPGPADRSYGIEVARLAGVPQSVIQRAKII 818 Query: 836 LKTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEK-----IKCLNLDEMSPLTA 890 L E+ + + + L +Q + LSK D VE +K +N + ++PL A Sbjct: 819 LTQLEQTHQQPRSLLNLLPGVVQN--ANEELSKQDVKVVEHPVVTLLKEMNPETLTPLDA 876 Query: 891 LKTLYAVK 898 LK+L K Sbjct: 877 LKSLVEWK 884 >gi|21674323|ref|NP_662388.1| DNA mismatch repair protein [Chlorobium tepidum TLS] gi|44888223|sp|Q8KCC0|MUTS_CHLTE RecName: Full=DNA mismatch repair protein mutS gi|21647498|gb|AAM72730.1| DNA mismatch repair protein MutS [Chlorobium tepidum TLS] Length = 878 Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust. Identities = 295/833 (35%), Positives = 466/833 (55%), Gaps = 42/833 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TPMMRQY+E+K P L+ +R+GDFYE F DDA+ S L I LT+R +IP Sbjct: 10 KEPTPMMRQYLEVKERYPGYLLLFRVGDFYETFLDDAVTVSSALNIVLTRRSNGGAGEIP 69 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 + G P H + YI KL+ G ++A+C+Q+E P AK +V+R + +VTPG D Sbjct: 70 LAGFPHHASEGYIAKLVTKGFKVAVCDQVEDPALAK-----GIVKREITDIVTPGITYSD 124 Query: 143 QLLSPTDSNYLMAVA---RIRTEWA-IAWIDISTGIFKISTSNHDRLISDIMRIDPREII 198 ++L +NYL AVA R R A +A++D++T F+++ L + + P EI+ Sbjct: 125 KILDDRHNNYLCAVAPVKRGREHMAGVAFVDVTTAEFRMTELPLGELKDFLQSLRPSEIL 184 Query: 199 FS--EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 S +KEL + KSLF G + F + + +++ ++ FG + Sbjct: 185 ISSRDKELRESLAKSLFS--GALFTTLDEWMFTEEQAARVLENHFKTHSLKGFGIEGYEA 242 Query: 256 EKTAAAAAISYI---KKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSRE 311 + AA + Y+ K+ + IG E + T+ +D NLEI+ ++ GS Sbjct: 243 GRIAAGVILQYLEEAKQGSLKYLVRIGLVESGE---TMTLDIQTCRNLEIISSMQDGSLN 299 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 SLL+ ID + G RL + PL + R D++ + P + I+ +L Sbjct: 300 GSLLEVIDRTKNPMGARLLRRWLLHPLRKLEPVVRRHDAVGELLDAPEMREGIRGMLGGI 359 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFL---KNDLPEELRGAVEKLKKLP 428 D+ R+L+R+ R P+++ + + + I L L K+ EL ++ L +L Sbjct: 360 IDLERALARIATSRAMPREVRQLGSSL-AMIPQLKSLLEGSKSLRLRELALRLDPLPELA 418 Query: 429 QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 +++EK L + S L RDGG++R G A LDE R++ ++ + +Q + + T I Sbjct: 419 ETIEKALDAEASGTL----RDGGYIRAGYHAELDELRAISSGARDRLLEIQQQERQRTSI 474 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 LK+++N GY+IEV+ +++ + + E K QT+ N R+T L + E +I Sbjct: 475 STLKVQYNKVFGYYIEVSRANSDKVPEYYEKK------QTLVNAERYTIPALKEYEEKIL 528 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 A + L+E + F+ L I EQ+ S+ + +A +D A A E YCRP+++ Sbjct: 529 TAEEKSQLLEHQLFQELCAMIAEQAASIQTTAAALAELDCLACFASCADEFGYCRPVMNE 588 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 T ++ GRHP++E+ L + +P++ANDC + +L ++TGPNM GKS++LR Sbjct: 589 GTELSIRAGRHPVLERILG--ADEPYVANDCQVGSEQ-----QLLIITGPNMAGKSSYLR 641 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q L+V++AQ+G +VPA A IG+VD++F+RVG++DNL SG STF+VEM E ASILN AT Sbjct: 642 QVGLVVLLAQVGCFVPAESAEIGLVDRIFTRVGASDNLTSGESTFLVEMNEAASILNNAT 701 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA 788 +S ++LDEIGRGT+T DG+SIAW+ EY+H+ R R L ATH+HEL +L +R N Sbjct: 702 ERSLLLLDEIGRGTSTFDGMSIAWSMCEYIHDQLRSRTLFATHYHELAELESRFERIVNF 761 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 V ++ + +IFL K++ G +D+SYGI+V K+AG+P VI RA +IL E+ Sbjct: 762 NATVVETADTVIFLRKIVRGASDNSYGIEVAKMAGMPPEVIERAREILAGMER 814 >gi|241662693|ref|YP_002981053.1| DNA mismatch repair protein MutS [Ralstonia pickettii 12D] gi|240864720|gb|ACS62381.1| DNA mismatch repair protein MutS [Ralstonia pickettii 12D] Length = 882 Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust. Identities = 318/898 (35%), Positives = 475/898 (52%), Gaps = 67/898 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ +K+ +PD+LVFYRMGDFYELFF+DA ASR L ITLT RG G I M G Sbjct: 22 TPMMQQYLRLKAGHPDTLVFYRMGDFYELFFEDAEKASRLLDITLTARGSSNGHPIRMAG 81 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H A Y+ KL+K+G +AICEQI P K V R VVR+VTPGTLT+ LL Sbjct: 82 IPFHAAEQYLAKLVKLGESVAICEQIGDPAT-----TKGPVERKVVRVVTPGTLTDAALL 136 Query: 146 SPTDSNYLMAVARIRTE------WAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 S +N+L+A+A++ + +AW+++ G ++ + D+L ++ RI P E++ Sbjct: 137 SDKINNHLLAIAQVPGKRGAAPLMGLAWLNLVGGELRVMECSPDQLDRELERIRPAEVLA 196 Query: 200 SEKELSHAEYKSLFETLGNVAVAQ---PNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 ++ L+ TL V VA+ P+ FD R+ + + ++ FG+ + Sbjct: 197 NDATLN---------TL-QVDVARTRLPDWHFDVEAGTRRLREQLGVASLVAFGAETLTA 246 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTL-----FI--DSAARSNLEILRTLSGS 309 AAA A+ T G R I T+ FI D+A R NLE+ TL G Sbjct: 247 ALAAAGALLNYAAA------TQGQSLRHVIGLTVEHESEFIGLDTATRRNLELTETLRGQ 300 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 +L +D T G RL + PL D R +I + + ++ L+ Sbjct: 301 ESPTLFSLLDTCATSMGSRLLRHWLHHPLRDRAVPQARQQAIEVLLGSDW--QTLRATLR 358 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKND---LPEELRGAVEKLKK 426 + DV R RL + P+D++ +RD + I ++D L EL A+ Sbjct: 359 TLSDVERITGRLALLSARPRDLSSLRDTLARLPEIREELPQSDAAPLLTELYAAL----S 414 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 LP+ L + + RDGG + G DA LDE R + + + + L+ + E T Sbjct: 415 LPEDAHALLQRAVMAEPAAMVRDGGVIARGYDADLDELRDISENCGQFLVDLEARERERT 474 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 I NL++++N G++IEVT+ A+ + D + RQT+ N R+ T EL E++ Sbjct: 475 GIANLRVEYNRVHGFYIEVTNGQAAKVPDD------YRRRQTLKNAERYITPELKAFEDK 528 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 +A + AL E +E L ++ + +A D+ LA A ++ RP + Sbjct: 529 ALSAQDRALSREKLLYEELLQKLLPHLAEFKRIAAALAQADVLATLAERAHALSWSRPTL 588 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 ++ + RHP+VE+ ++Q F+ANDC L + + KL L+TGPNMGGKSTF Sbjct: 589 TDAPGIELTRARHPVVEQQVEQ-----FVANDCML-----QEARKLLLITGPNMGGKSTF 638 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ AL+V++A +G++VPA A IG +D++F+R+G+AD+LA GRSTFMVEM E A+IL++ Sbjct: 639 MRQTALVVLLAYVGAFVPAEVAVIGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILHR 698 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT S V++DEIGRGT+T DGL++AWA +L NR L ATH+ ELT L + + Sbjct: 699 ATPNSLVLMDEIGRGTSTFDGLALAWAIARHLLSHNRSHTLFATHYFELTQLPQEFAQAA 758 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN 846 N L + +GI+FLH V G A SYG+QV +LAG+P VI A L E+ Sbjct: 759 NVHLSAVEHGDGIVFLHAVQEGPASQSYGLQVAQLAGVPQPVIRAARKRLAWLEQHSADT 818 Query: 847 QKDMRLYYPEIQT-----KESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 +L + T E + D + + ++ D+M+P AL LY +KA Sbjct: 819 GATPQLDLFALATDTPIDDEGDADAETPDSALADALAGIDPDDMTPREALDALYRLKA 876 >gi|292487253|ref|YP_003530125.1| DNA mismatch repair protein mutS [Erwinia amylovora CFBP1430] gi|292900376|ref|YP_003539745.1| DNA mismatch repair protein [Erwinia amylovora ATCC 49946] gi|291200224|emb|CBJ47352.1| DNA mismatch repair protein [Erwinia amylovora ATCC 49946] gi|291552672|emb|CBA19717.1| DNA mismatch repair protein mutS [Erwinia amylovora CFBP1430] Length = 853 Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust. Identities = 309/891 (34%), Positives = 493/891 (55%), Gaps = 53/891 (5%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 ++++L TPMM+QY+ +K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LT+RG Sbjct: 5 IDKDLSVHTPMMQQYLRLKAEHPEILLFYRMGDFYELFYDDAKRASQLLEISLTRRGSSA 64 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G IPM GVP H +Y+ KL+++G +AICEQI P +K V R VVR+VTPG Sbjct: 65 GDPIPMAGVPYHAVENYLAKLVQLGESVAICEQIGDPA-----ASKGPVERKVVRIVTPG 119 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPRE 196 T++++ LL+ N L A+ + A +DIS+G F+++ ++ + + +++ R +P E Sbjct: 120 TISDEALLNERQDNLLAAIWHSPRGFGYATLDISSGRFRLAEPADLETMAAELQRTNPAE 179 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 +++ E + A L E N + +++ + +R T D G F VE Sbjct: 180 LLYPEDFAAMA----LIE---NRRGLRRRPLWEYELDTARQQLNLQFATRD-LGGFG-VE 230 Query: 257 KT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 + AA + Y+K TQ + P I E Q + +D+A R NLEI + L+G E Sbjct: 231 QAHLALRAAGCLLQYVKDTQRTSLPHIRSLTMERQQDGIIMDAATRRNLEITQNLAGGSE 290 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 +L +D ++T G R+ + PL ++ I R SI +Q+ L + + +L+ Sbjct: 291 NTLASVLDKTVTAMGSRMLKRWLNMPLRNTQTITLRQQSIRA-LQD--LSDNLSPLLRQV 347 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSL 431 D+ R L+RL + P+D+A +R + + +LN L N L+ ++ + + L Sbjct: 348 GDLERILARLALRTARPRDLARMRHAFQQ-LPLLNSELLNSDIAHLQTLRSQMGEFTE-L 405 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + L + + P RDGG + G + LDE R+L D + + L+++ E+ + L Sbjct: 406 RELLDRAIVETPPVLVRDGGVIAPGYNQELDEWRALADGATDYLERLEIREREKLGLDTL 465 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 K+ N GY+I+V+ + ++++ ++ RQT+ N R+ EL + E+++ + Sbjct: 466 KVGFNGVHGYYIQVSRAQSNLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSK 519 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 AL +E ++ L + ++ E+L +++ +A +D+ LA A NY P + ++ Sbjct: 520 GKALSLEKALYDQLFDMLLPHLEALQDSASALAELDVLSNLAERALTLNYHCPTLSDTPG 579 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 + GRHP+VE+ LK+ PFIAN LS ++ ++TGPNMGGKST++RQ A Sbjct: 580 IQLTGGRHPVVEQVLKE----PFIANPLSLSPQR-----RMLVVTGPNMGGKSTYMRQAA 630 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LI +MA +GS+VPA A IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ A+ S Sbjct: 631 LITLMAYIGSFVPADQAVIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNASEYS 690 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + N L Sbjct: 691 LVLMDEIGRGTSTYDGLSLAWACAESLANRIKALTLFATHYFELTTLPEQIDGVANVHLD 750 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR 851 + + I F+H V G A SYG+ V LAG+P VI RA LK E L Sbjct: 751 AVEHGDTIAFMHSVQEGAASKSYGLAVAALAGVPKDVIKRARQKLKQLEALSGSAAS--- 807 Query: 852 LYYPEIQTKESKNNLS---KNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 TK + + L + +E ++ L+ D +SP AL+ +Y +K+ Sbjct: 808 -------TKANGSQLPLLVEETSPALEALEALDPDSLSPRQALEWIYRLKS 851 >gi|224023432|ref|ZP_03641798.1| hypothetical protein BACCOPRO_00132 [Bacteroides coprophilus DSM 18228] gi|224016654|gb|EEF74666.1| hypothetical protein BACCOPRO_00132 [Bacteroides coprophilus DSM 18228] Length = 878 Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust. Identities = 311/896 (34%), Positives = 486/896 (54%), Gaps = 56/896 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY ++K+ +PD+++ +R GDFYE + +DA+ A+ LGITLTKR K + M G Sbjct: 10 TPMMKQYFDLKAKHPDAIMLFRCGDFYETYSEDAVAAAEILGITLTKRANGQAKTVEMAG 69 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KLI+ G R+AIC+Q+E P KK LV+R + LVTPG D +L Sbjct: 70 FPHHALDTYLPKLIRAGRRVAICDQLEDPKTTKK-----LVKRGITELVTPGVAINDNVL 124 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF--SEKE 203 S ++N+L AV +T +A++DISTG F + D + + P+E++F ++ Sbjct: 125 SYKENNFLAAVHFGKTACGVAFLDISTGEFMTAEGPFDYIDKLLNNFGPKEVLFERGKRG 184 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + + S F T + F + + ++ ++ + FG A+ A Sbjct: 185 MFEGNFGSKFFTF-----ELDDWIFTETSAREKLLKHFETKNLKGFGVEHLKNGIIASGA 239 Query: 264 I-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ---SLLKTID 319 I Y+ TQ I R + + +D +LE L+GS + SLL ID Sbjct: 240 ILQYLDMTQHYQIGHITSLSRIEEDRYVRLDKFTVRSLE----LTGSMNEGGTSLLDVID 295 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 ++I+ G RL I PL D IN RLD + +F + P + I++ L D+ R +S Sbjct: 296 HTISPMGARLLKRWIVFPLKDVKPINERLDVVEYFFREPDFKDFIEEKLHLIGDLERIVS 355 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 + +GR P+++ ++ +++ I N +N E LR E+L L S+ ++ + Sbjct: 356 KAAVGRISPREVVQLKVALQAIEPIKNA-CQNAENESLRRIGEQLN-LCVSIRDKIAREI 413 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 +D P GG + DG + LDE R + K + +Q + E+T I +LKI +NN Sbjct: 414 KNDPPLLVNKGGVIADGVNEELDELRRIAYSGKDYLLQIQQREIEQTGIPSLKIAYNNVF 473 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IEV ++ + + +I +QT+ N R+ T EL + E +I A + L++E Sbjct: 474 GYYIEVRNTHKDKVPAE------WIRKQTLVNAERYITQELKEYEEKILGAEDKILILET 527 Query: 560 ESFEILSNAIIEQSESLD-NASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + L A+ E ++ NA+Q IA +D ++ A +AK Y RP++ + ++ GR Sbjct: 528 RLYNELVMALSEFIPAIQINATQ-IARLDCLLSFASVAKANRYIRPVVADDDVLDIRQGR 586 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP++EK L + +IAND L D ++ ++TGPNM GKS LRQ ALI +MAQ Sbjct: 587 HPVIEKQLP--LGEKYIANDVYL----DTEEQQIIIITGPNMAGKSALLRQTALITLMAQ 640 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +G +VPA AHIG+VDK+F+RVG++DN++ G STFMVEM E A ILN + +S V+ DE+ Sbjct: 641 IGCFVPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNLSPRSLVLFDEL 700 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRG--LLATHFHELTDLSKSLKRFHNATLQVSDSN 796 GRGT+T DG+SIAWA +E++HE R R L ATH+HEL D+ KR N + V + + Sbjct: 701 GRGTSTYDGISIAWAIVEHIHEHKRARARTLFATHYHELNDMEAQFKRIKNYNVTVKEVD 760 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 +IFL K+ G ++HS+GI V K+AG+P T++ RA +IL E + + Sbjct: 761 NKVIFLRKLERGGSEHSFGIHVAKMAGMPKTIVKRADEILHQLEA----ENRQEGISAQN 816 Query: 857 IQTKESKNNLSKNDKLFV------EKIKC------LNLD--EMSPLTALKTLYAVK 898 I TK N ++ D + + + + C LNLD ++P+ AL L +K Sbjct: 817 IHTKSKSNATAQQDGVQLSFFQLDDPVLCQIRDEILNLDVNNLTPIEALNKLNDIK 872 >gi|317474657|ref|ZP_07933931.1| DNA mismatch repair protein MutS [Bacteroides eggerthii 1_2_48FAA] gi|316909338|gb|EFV31018.1| DNA mismatch repair protein MutS [Bacteroides eggerthii 1_2_48FAA] Length = 871 Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust. Identities = 305/890 (34%), Positives = 491/890 (55%), Gaps = 49/890 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+Q++++K+ +PD+++ +R GDFYE + DA++A+ LGITLTKR GK I M G Sbjct: 8 TPMMKQFLDLKAKHPDAVMLFRCGDFYETYSTDAIVAAEILGITLTKRANGKGKTIEMAG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KLI+ G R+AIC+Q+E P KK LV+R + LVTPG D +L Sbjct: 68 FPHHALDTYLPKLIRAGKRVAICDQLEDPKLTKK-----LVKRGITELVTPGVSINDNVL 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF--SEKE 203 + ++N+L AV + ++++DISTG F + D + + P+E++F + Sbjct: 123 NYRENNFLAAVHFGKGACGVSFLDISTGEFLTAEGPFDYVDKLLNNFAPKEVLFERGRRG 182 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK-----T 258 + + S F T + F + + ++ ++ + + FG VE Sbjct: 183 MFEGNFGSKFFTF-----ELDDWVFTETTAREKLLKHFEVKNLKGFG----VEHLKNGII 233 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 A+ A + Y+ TQ I R + + +D +LE++ +++ SLL I Sbjct: 234 ASGAVLQYLIMTQHTQIGHITSLARIEEDKYVRLDKFTVCSLELMGSMNDGG-SSLLNVI 292 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D +I+ G RL + PL D IN RL+ + +F + P I++ L D+ R + Sbjct: 293 DRTISPMGARLLKRWMVFPLKDVQPINERLNVVEYFFRKPDFKELIEEQLHLIGDLERII 352 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 S++ +GR P+++ ++ +++ I + D L E+L + +S+ + Sbjct: 353 SKVAVGRVSPREVVALKVALQAVEPIKEACMDAD-NASLNHIGEQLN-ICRSIRDRIDKE 410 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 +++D P GG ++ G +A LDE R + K + +Q + +E T I +LKI +NN Sbjct: 411 VNNDPPLLINKGGVIKSGVNAELDELRQIAYSGKDYLLQVQQRESELTGIPSLKIGYNNV 470 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IEV + + KD + +I +QT+ N R+ T EL + E +I A + L++E Sbjct: 471 FGYYIEVRN-----VHKD-KVPQEWIRKQTLVNAERYITQELKEYEEKILGAEDKILVLE 524 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + + L ++ E ++ + IA +D ++ A A+E NY RP+I + + GR Sbjct: 525 TQLYTELVQSLSEFIPAIQINANQIARLDCLLSFATAARENNYIRPVISDDEVLEIHQGR 584 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP++EK L + +IAND L D ++ ++ ++TGPNM GKS LRQ ALI +MAQ Sbjct: 585 HPVIEKQLP--IGEKYIANDVML----DSSTQQIIIITGPNMAGKSALLRQTALITLMAQ 638 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA AHIG+VDK+F+RVG++DN++ G STFMVEM E A ILN +++S V+ DE+ Sbjct: 639 IGSFVPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNLSSRSLVLFDEL 698 Query: 739 GRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 GRGT+T DG+SIAWA +EY+HE R R L ATH+HEL ++ KS KR N + V + + Sbjct: 699 GRGTSTYDGISIAWAIVEYIHEHPRAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEID 758 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 +IFL K+ G ++HS+GI V K+AG+P +++ RA DILK E N++ P Sbjct: 759 NKVIFLRKLERGGSEHSFGIHVAKMAGMPKSIVKRAADILKQLET---DNRQQGVSSKPM 815 Query: 857 IQTKESKNNLSKNDKLFVEKIKC------LNLD--EMSPLTALKTLYAVK 898 + E + + + + I C LNLD ++PL AL L +K Sbjct: 816 AEVGEMRGGMQLSFFQLDDPILCQIRDEILNLDVNNLTPLEALNKLNDIK 865 >gi|238027984|ref|YP_002912215.1| DNA mismatch repair protein MutS [Burkholderia glumae BGR1] gi|237877178|gb|ACR29511.1| DNA mismatch repair protein MutS [Burkholderia glumae BGR1] Length = 900 Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust. Identities = 310/904 (34%), Positives = 463/904 (51%), Gaps = 48/904 (5%) Query: 17 DLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKH 76 D E +K+ TP M+QY+ IKS +PD+LVFYRMGDFYELF+DDA A+R L +TLT+RG Sbjct: 12 DQTEGVKAHTPYMQQYLRIKSEHPDTLVFYRMGDFYELFYDDAEKAARLLDLTLTQRGAS 71 Query: 77 LGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTP 136 G I M GVP H Y+ KL+K G +AICEQI P +K V R VVR+VTP Sbjct: 72 GGNPIRMAGVPHHAVEQYLAKLVKFGESVAICEQIGDPAT-----SKGPVERKVVRVVTP 126 Query: 137 GTLTEDQLLSPTDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTSNHDRLISDIM 190 GTLT+ LLS +L+A++ + T +AW+++++G +++ D L + + Sbjct: 127 GTLTDAALLSDKADVFLLALSLGHNKRGVVTNIGLAWLNLASGALRLAEIAPDELGAALE 186 Query: 191 RIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG 250 RI P EI+ + + +++ G V P FD + R+ ++ +++ FG Sbjct: 187 RIRPAEILAGDGAI-----EAIPPGAGAVTRV-PAWHFDVASGTQRLCSQLDVASLEGFG 240 Query: 251 SFSQVEKTAAAAAIS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS 309 + S +A A+ Y TQ + + E + +D A R NLE+ TL G+ Sbjct: 241 AHSLTSACGSAGALLLYAASTQGQQLRHVRSLKVETESEYIGLDPATRRNLELTETLRGT 300 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL--INPIQKI 367 +L +D T G RL + P S R +I ++ ++ +++ Sbjct: 301 ESPTLYSLLDTCCTTMGSRLLRHWLHHPPRASVAAQGRQQAIGALLEAAGAASLDNLRRA 360 Query: 368 LKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL 427 L+ DV R RL + P+D++ +RD + + L + +E Sbjct: 361 LRQIADVERITGRLALLSARPRDLSSLRDTFAALPALRELVAPITQHADTLARLEAALAP 420 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 P L+ ++ + RDGG + G D LDE R + + + + L+ + T Sbjct: 421 PAGCADLLARAIAPEPAAMVRDGGVIARGYDTELDELRDISENCGQFLIDLEARERARTG 480 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 I NL+++ N G++IEVT + D + RQT+ N R+ T EL E++ Sbjct: 481 IPNLRVEFNRVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTFEDKA 534 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 +A AL E +E L +++ E + +A +D+ A A A+E ++ P Sbjct: 535 LSAQERALSREKALYEALLQSLLPFIEDCQRVAAALAELDVLGAFAERARELDWVAPSFS 594 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 + ++ GRHP+VE ++Q FIANDC L +D+ KL L+TGPNMGGKSTF+ Sbjct: 595 DEIGIDIEQGRHPVVEAQVEQ-----FIANDCRLG--SDR---KLLLITGPNMGGKSTFM 644 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ ALI +MA +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+ILN A Sbjct: 645 RQTALIAMMAYVGSYVPAKSARFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILNDA 704 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 T QS V++DEIGRGT+T DGL++AWA +L N C L ATH+ ELT L N Sbjct: 705 TPQSLVLMDEIGRGTSTFDGLALAWAIARHLLSHNGCYTLFATHYFELTQLPAEFPHAAN 764 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN- 846 L + GI+FLH V G A+ SYG+QV +LAG+P VI A L E+ Sbjct: 765 VHLSAVEHGHGIVFLHAVDEGPANQSYGLQVAQLAGVPPAVIRAARKHLAHLEQQSAGQP 824 Query: 847 --QKDMRLYYPEI---------QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 Q D+ P + E + +++ ++ DE+ P AL LY Sbjct: 825 TPQLDLFAAPPPVYDDAPDDGRPAAEYHETARPEPHPALARLRGIDPDELKPREALDLLY 884 Query: 896 AVKA 899 + A Sbjct: 885 ELHA 888 >gi|329896376|ref|ZP_08271475.1| DNA mismatch repair protein MutS [gamma proteobacterium IMCC3088] gi|328921796|gb|EGG29167.1| DNA mismatch repair protein MutS [gamma proteobacterium IMCC3088] Length = 860 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 312/878 (35%), Positives = 480/878 (54%), Gaps = 41/878 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+Q++ IK+ +P L+FYRMGDFYELFFDDA+ A+ L ITLT RGK G+DIPMCG Sbjct: 16 TPMMQQFLRIKAEHPKHLLFYRMGDFYELFFDDAVRAASLLDITLTARGKSGGEDIPMCG 75 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ +LI+ G +AICEQ+ P +K V+R VVR++TPGTL+++ LL Sbjct: 76 VPYHAAESYLARLIRKGESVAICEQVGDPATSK-----GPVKREVVRIITPGTLSDEALL 130 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSEKEL 204 + N ++A+ + + +A+I++S GIFK+ ++ + L +++ R+ P E+++ Sbjct: 131 DQSRDNLILAIHQGKDSIGVAYIELSAGIFKVLEVADRELLAAELSRLQPAEVLY----- 185 Query: 205 SHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 A+ + + + + +V + P F+ +E + ++ + FG + AA A Sbjct: 186 --AQSSGISDLVTSKSVRELPPWDFEPESAERELNRHFGTQDLAGFGCSELTQAVCAAGA 243 Query: 264 I-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 + Y+K TQ + E + +D + R NLEI L G + +L ++ Sbjct: 244 LLRYVKDTQRDELTHLTSLSHEQNSDAVLMDPSTRRNLEIDINLQGGEDNTLYSVLNTCK 303 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G RL + P+ I RLD+++ I N + ++ L D+ R L+R+ Sbjct: 304 TPMGARLLRRELLRPMAKRPAIERRLDALSAIIDN-MRDGDLRLALAGVGDMDRILTRVA 362 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 + P+D+ +R + + L L++ L L Q+L L + D+ Sbjct: 363 LRSARPRDLTRLRQSLHC-VPPLQQILEHINDSVLTDICLNLGDF-QALRDLLDHAIIDN 420 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P R+GG + G + LDE R L Q+ + L+ + E T I LK+ +N GY+ Sbjct: 421 PPVVIREGGVIAPGFNPDLDELRGLSTQAGDYLLELETRERERTGISTLKVAYNRVHGYY 480 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IE++ + A D + RQT+ N+ RF T EL E++ +A + AL +E E + Sbjct: 481 IEMSKAQAEQAPVD------YQRRQTLKNVERFITPELKAFEDKALSAKSRALALEKELY 534 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 E + + + L ++ +A++D+ LA A+ RP N F V GRH +V Sbjct: 535 EEILTTLNAELLPLRACAEALALLDLLACLAERAQALRLVRPTFGNERLFEVNQGRHLVV 594 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 E Q S PFIAND L+ N ++ L+TGPNMGGKST++RQ ALI +MA +GSY Sbjct: 595 E----QVSESPFIANDLLLN-----NQREMLLITGPNMGGKSTYMRQIALIALMAHVGSY 645 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA AH+ +D++F+R+GS+D+LA GRSTFMVEM +TA+ILN AT+ S V++DEIGRGT Sbjct: 646 VPAEAAHLSTIDRIFTRIGSSDDLAGGRSTFMVEMTDTANILNNATSNSLVLMDEIGRGT 705 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFL 802 +T DGLS+AWAT L + C L +TH+ ELT+L N L + N+GI+F+ Sbjct: 706 STFDGLSLAWATARRLADHIHCFTLFSTHYFELTELPSLCPNMINVHLGAQEYNDGIVFM 765 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ-KDMRLYYPEIQTKE 861 H V G A S+G+QV KLAGLP VI A L E+ + +Y E+ E Sbjct: 766 HTVREGAASQSFGLQVAKLAGLPANVIQAAKTKLTELEQGSKQTKAATAAVYQAELFADE 825 Query: 862 SKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + + + E ++ LN D+M+P+ AL L +K+ Sbjct: 826 ASDTVK-------EALQQLNPDQMTPIEALVALSQLKS 856 >gi|330443841|ref|YP_004376827.1| DNA mismatch repair protein MutS [Chlamydophila pecorum E58] gi|328806951|gb|AEB41124.1| DNA mismatch repair protein MutS [Chlamydophila pecorum E58] Length = 826 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 296/825 (35%), Positives = 457/825 (55%), Gaps = 28/825 (3%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TPMM Q+ K +S++ +RMGDFYE F+DDA S+ LG+TLT+R + IP Sbjct: 4 KKPTPMMEQWHRCKEKAGESILLFRMGDFYEAFYDDASFLSQNLGLTLTQR-----QGIP 58 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M G+PV + Y+ +LI G ++AI EQ+E + RG + R++ R +TPGTL Sbjct: 59 MSGIPVASVESYVDRLISQGFKVAIAEQLEDAKNKETRGAP--LSRDIQRFITPGTLLSS 116 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSE 201 LL +NY++AV+R+ + + A +D+S G F + N LI +I R+ P+EI+ + Sbjct: 117 SLLYEKTNNYILAVSRVGSLFGFACLDLSIGSFLLGEYDNPKELIDEICRLAPKEILSYD 176 Query: 202 KELSHAE--YKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK-T 258 K + L + L + P+ F+H + ++ ++++ ++D FG + Sbjct: 177 KFYKKQTPIIQQLQQHLKFTSSVYPDWAFEHQFASQKLTSHFHVASLDGFGLKGLLPSIN 236 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR-EQSLLKT 317 AA +SYI+ ++ I P Q L +D+ +++NLE+L L+ SLL Sbjct: 237 AAGGLLSYIQDKLLLPINHIDIPRMHGQQQRLLLDTTSQANLELLTPLNDPMGRSSLLHI 296 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D + T GGRL + + SP + I R D++ FF+ L ++ L D+ R Sbjct: 297 MDKTCTPMGGRLLHQILISPFYNLQDILLRQDAVEFFLPKTKLRKSLRSYLSQIRDIERL 356 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 +++ G PKD+ ++RD + + ++ + LP + +L +L + LS Sbjct: 357 MTKFATGLAGPKDLGMLRDSLSASASVCSQLSSFALPAFFKDRFFLTPEL-STLTQRLSQ 415 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 L++DLP +G A L ++ S+ + Q K + T IK LK+ ++ Sbjct: 416 ALNEDLPLRLSEGNIFSRDFHAELKRLHYTQEHSQDWLLQYQEKIRQNTGIKKLKVCFSH 475 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 LGY+IEV+S A L FI RQ+ + RFTT EL ++ + N ++ + Sbjct: 476 ALGYYIEVSSEFAPQLSSS------FIRRQSRLHAERFTTEELQQFQDTMFNLSDKLQAL 529 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + F+ + I++Q +L +Q IA +D ++LA LA YCRP++DNS + G Sbjct: 530 ETQLFKEFCSQILQQRAALSALAQAIADVDYILSLAELADTHGYCRPLVDNSEILSICRG 589 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 HP+ + L + FI ND ++ + ++ LLTGPNM GKST++RQ AL+VIMA Sbjct: 590 CHPVAQTLL---DTGRFIPNDIEM----HSSKTRVILLTGPNMAGKSTYIRQIALLVIMA 642 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 QMGS++PA AHIGIVDK+F+R+G+ DNLA G STFMVEM ETA+IL+ ATN+S VILDE Sbjct: 643 QMGSFIPAKAAHIGIVDKIFTRIGAGDNLAKGMSTFMVEMTETANILHNATNRSLVILDE 702 Query: 738 IGRGTATLDGLSIAWATIEYL--HETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 IGRGT+T DGL+IA A +EYL E + + L ATH+ EL L + N V +S Sbjct: 703 IGRGTSTYDGLAIAQAVVEYLLFTEGRKAKALFATHYKELAQLEEQSPHVENFHAGVKES 762 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + IFL++++ G + S+GI V +L+G P VISRA IL+ E Sbjct: 763 SGQPIFLYEILKGYSQKSFGIHVARLSGFPLCVISRAQQILRQLE 807 >gi|237729718|ref|ZP_04560199.1| DNA mismatch repair protein mutS [Citrobacter sp. 30_2] gi|226908324|gb|EEH94242.1| DNA mismatch repair protein mutS [Citrobacter sp. 30_2] Length = 855 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 308/902 (34%), Positives = 486/902 (53%), Gaps = 73/902 (8%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 L+ + + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG Sbjct: 5 LDTDFTNHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASA 64 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G+ IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPG Sbjct: 65 GEPIPMAGIPHHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPG 119 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPRE 196 T++++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E Sbjct: 120 TISDEALLQERQDNLLAAIWQDSKGYGYATLDISSGRFRVSEPADRETMAAELQRTNPAE 179 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 ++++E AE SL E + ++ I +R T D G F VE Sbjct: 180 LLYAE---DFAE-TSLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLIG-FG-VE 230 Query: 257 KT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 AA + Y+K TQ + P I E Q ++ +D+A R NLEI + L+G E Sbjct: 231 NAPRGLCAAGCLLQYVKDTQRTSLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGVE 290 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 +L +D ++T G R+ + P+ D+ + R +I + + +Q +L+ Sbjct: 291 NTLASVLDCTVTPMGSRMLKRWLHMPVRDTKVLTERQQTIGALQDS---TDELQPVLRQV 347 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP--- 428 D+ R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 348 GDLERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLESVDSAPVQM 394 Query: 429 --------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 L + L + + P RDGG + G + LDE R+L D + + L++ Sbjct: 395 LREKMGEFAELRELLERAVVEAPPVLVRDGGVIAPGYNEELDEWRALADGATDYLDRLEI 454 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 + E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL Sbjct: 455 RERERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPEL 508 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 + E+++ + AL +E + ++ L + ++ L ++ +A +D+ + LA A N Sbjct: 509 KEYEDKVLTSKGKALALEKQLYDELFDMLLPHLADLQQSASALAELDVLVNLAERAYTLN 568 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 Y P + + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNM Sbjct: 569 YTCPTFTDKPGIRITEGRHPVVEQVL----TEPFIANPLNLSPQR-----RMLIITGPNM 619 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GGKST++RQ ALI ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ET Sbjct: 620 GGKSTYMRQTALIALLAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTET 679 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 A+IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + Sbjct: 680 ANILHNATENSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPE 739 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 ++ N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E Sbjct: 740 KMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELE 799 Query: 841 KLYHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAV 897 + + Q D T+ S + + VE ++ L+ D ++P AL+ +Y + Sbjct: 800 SIAPNVAATQVD--------GTQMSLLSAPEETSPAVEALENLDPDSLTPRQALEWIYRL 851 Query: 898 KA 899 K+ Sbjct: 852 KS 853 >gi|241894950|ref|ZP_04782246.1| DNA mismatch repair protein [Weissella paramesenteroides ATCC 33313] gi|241871668|gb|EER75419.1| DNA mismatch repair protein [Weissella paramesenteroides ATCC 33313] Length = 878 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 297/819 (36%), Positives = 468/819 (57%), Gaps = 36/819 (4%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM QY EIK+ PD+ +FYR+GDFYELF +DA++ S+ L +TLT+R K+ + IPM Sbjct: 6 TTPMMAQYNEIKAQYPDAFLFYRLGDFYELFNEDAIVGSQILELTLTQRNKNSAQPIPMA 65 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H A +YI L+ G+++A+ EQ+E+P +A+ +V+R VV+LVTPGT + Sbjct: 66 GVPHHAAQNYIDILVDKGYKVAVVEQMENPADAE-----GMVKREVVQLVTPGTRMKTTA 120 Query: 145 LSPTDSNYLMAVARIRTE-WAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEK 202 + ++NYL+ +A + + + +A+ D+STG K + + + ++++I R++ +E++ + Sbjct: 121 DAAKENNYLVGLATTKPDDYGLAYTDLSTGEIKATDLQSVNGILNEISRLETKEVV-TAN 179 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 EL L +L N+ + + D SE + +T +KTAA Sbjct: 180 ELP----SDLQASLTNLGILVSKI--DQQASEHAEIAFLTQHLTET------AQKTAAET 227 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYS 321 + Y+ TQ + + ++ L +D +R+NLE+ L + R +LL +D + Sbjct: 228 LLQYLFDTQKRSLDHLQQASAYEVAQYLKMDRHSRANLELTVNLRTQQRSGTLLWLLDET 287 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T GGR + + PL D+ + R D I I++ + +Q+ L+S D+ R R+ Sbjct: 288 KTAMGGRALKQWLEQPLLDADILMQRYDKIGELIEDFFGRSALQEALQSVYDLERLAGRV 347 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 G +D+ +R+ +R +IL + DL + G + +E +S ++D Sbjct: 348 AYGTANGRDLLQLRNSLRQVPDILAIL--ADLDPAIFGELHSQIDPVADIETLISESITD 405 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + P DGG +R G D LD R + K +A L+ EET I +LKI N GY Sbjct: 406 EPPISVTDGGVIRAGYDEQLDSYRDIMTNGKSWLAELEAHEREETGINSLKIGFNKVFGY 465 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IEVT A++ K D E R+ +QT+ N RF T EL + E I A + + +E + Sbjct: 466 YIEVTK--ANIPKLDPE---RYTRKQTLVNAERFITPELKEREQMILEAESKSSELEYQL 520 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 F + I + + + + +A +D+ +LA +A++ ++ RP + + +KDGRHP+ Sbjct: 521 FTKVRQIIKDNIQRIQTLAANLAQLDVIQSLATVAEKYHFVRPTLTDEQTIAIKDGRHPV 580 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VEK L QS ++AND D+ + + L+TGPNM GKST++RQ ALIV+MAQ+GS Sbjct: 581 VEKVLGHQS---YVANDVDM-----QQDDTILLITGPNMSGKSTYMRQLALIVVMAQIGS 632 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPAS A + I D++F+R+G+AD+L SG STFMVEM E + L AT S ++ DE+GRG Sbjct: 633 FVPASEATLPIFDQIFTRIGAADDLISGNSTFMVEMSEANTALQNATKHSLILFDELGRG 692 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 TAT DG+++A A IEY+H+ + + L +TH+HELT L+ L N + ++ + +IF Sbjct: 693 TATYDGMALAQAIIEYVHQHTQAKTLFSTHYHELTALADELTALRNVHVGATEEHGELIF 752 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 HKV+PG AD SYGI V KLAGLP T+I RA IL E Sbjct: 753 SHKVLPGPADQSYGINVAKLAGLPETLIKRAAKILANLE 791 >gi|284048549|ref|YP_003398888.1| DNA mismatch repair protein MutS [Acidaminococcus fermentans DSM 20731] gi|283952770|gb|ADB47573.1| DNA mismatch repair protein MutS [Acidaminococcus fermentans DSM 20731] Length = 869 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 298/895 (33%), Positives = 490/895 (54%), Gaps = 62/895 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR-GKHLG--KDIP 82 TPM++QY+EIK + D L+F+R+GDFYELF +DAL ASR L +TLTKR G G +P Sbjct: 5 TPMLQQYLEIKEQHKDELLFFRLGDFYELFNEDALTASRELNLTLTKRAGGKAGASSSMP 64 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP H+ + Y+ KLI+ G++IAIC+Q+E P +A +V+R V +++TPGT+ D Sbjct: 65 MCGVPFHSVDGYLAKLIRKGYKIAICDQMEDPKKAV-----GIVKRQVTKILTPGTVLSD 119 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTS-NHDR---LISDIMRIDPREII 198 +L + YL + + +A+ D+STG T+ DR ++ + RI P E++ Sbjct: 120 AVLEENHNQYLACLEQQEDTLCLAYADVSTGECAWYTARGKDREEAVLDQLYRIQPAELV 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTF--------- 249 +E S + L + + + + + Y + +D F Sbjct: 180 LTE---SSEAFGGLLDKMV------------QKLPDCMVNQYDPVPGLDYFTRHFGSDCP 224 Query: 250 -GSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS- 307 G V T + YI + + I + + +D+ A NLE+++ + Sbjct: 225 AGKLPLVRGTVEHM-LQYIHENVKSDLAQINRLREITTDAVMNLDATAIRNLELVKNMKD 283 Query: 308 GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI 367 G+R +LL +DY+ T G R + + +PL D+ +I R +I + + N + Sbjct: 284 GTRHGTLLDVLDYTRTAMGARQLRQWVEAPLLDTARIRLRQQAIGWMVDNARFRTDLGDA 343 Query: 368 LKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL 427 L D+ R LSR+++G +D+A +R +R+ + +L + +P+ L ++ L Sbjct: 344 LSEITDLERILSRIEVGSANARDLAALRTALRALPQVKSLL--DQVPQGLLHTLDGRISL 401 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 + L L + DD P RDGG +R G +A LDE + + + + + + K ++T Sbjct: 402 HEDLLDELERGIVDDPPFTVRDGGMIRKGFNAELDEVHDIAENNNQWMLHFEQKIKDQTG 461 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 IKNLK+ +N GY+IEV+ S + D FI +QT+ N R+ EL + EN+I Sbjct: 462 IKNLKVGYNKVFGYYIEVSRGQVS------QVPDTFIRKQTLVNGERYIVPELKEFENKI 515 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 +A +E F + I + + ++ + ++D+ +LA+ A + +Y P ++ Sbjct: 516 LSAREKIQQLEYYLFNEIRQDIRQHLVEVQETARALGVLDVLYSLAMAAFKGSYVCPRLN 575 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 + ++KDGRHP+VEK L+++ F+ ND L+ +++ L +LTGPNM GKST++ Sbjct: 576 DRQEILIKDGRHPVVEKLLEREL---FVPNDVHLNNTDER----LIILTGPNMAGKSTYM 628 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ AL+ +M QMGS++PA A + VD++F+RVG++D+LA+G+STFMVEM E A+IL A Sbjct: 629 RQVALLTLMTQMGSFIPAREADVCPVDRIFTRVGASDDLATGQSTFMVEMNEVANILKYA 688 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 T++S +ILDE+GRGT+T DG+SIA A +E++++ R + L ATH+HEL +L + N Sbjct: 689 TSRSLIILDEVGRGTSTYDGMSIARAVVEFINDKIRAKTLFATHYHELIELEQLDPGIKN 748 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ 847 ++ V + + ++FL +++PG D SYGI V +LAGLP V+ RA ++L + Q Sbjct: 749 YSVAVKEKGKEVVFLRRIVPGGTDKSYGIHVARLAGLPEKVVKRADELLAQYTAQGTTGQ 808 Query: 848 KDMRLYYPEIQTKESKNNLSKNDKLFVEKI----KCLNLDEMSPLTALKTLYAVK 898 P Q E+ LF + I + L++ M+PL AL TLY ++ Sbjct: 809 PAA----PVPQKPEAPKEEDLQPSLFGDVIGDTLRNLDVMTMTPLEALNTLYKLQ 859 >gi|157148278|ref|YP_001455597.1| DNA mismatch repair protein MutS [Citrobacter koseri ATCC BAA-895] gi|172045591|sp|A8ANU8|MUTS_CITK8 RecName: Full=DNA mismatch repair protein mutS gi|157085483|gb|ABV15161.1| hypothetical protein CKO_04095 [Citrobacter koseri ATCC BAA-895] Length = 853 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 307/900 (34%), Positives = 486/900 (54%), Gaps = 73/900 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +NL + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 DNLDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDARRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPHHAVENYLAKLVNQGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTS-NHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S + + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGYGYATLDISSGRFRLSEPVDRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E A + + ++ I +R T D G F VE Sbjct: 180 YAEDFAEMA-------LIDGRRGLRRRPLWEFEIDTARQQLNLQFGTRDLIG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y+K TQ + P I E Q ++ +D+A R NLEI + L+G + + Sbjct: 231 PRGLCAAGCLLQYVKDTQRTSLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGVDNT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ + + +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTKTLIERQQTIGA-LQD--VTSELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVTSAPVQNLR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFTELRDLLERAIIDAPPVLVRDGGVIAPGYNEELDEWRALADGATDYLDRLEIRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + ++ L + ++ L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALALEKQLYDELFDLLLPHLAELQQSANALAELDVLVNLAERAYTLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFSDKPGIRITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQTALIALLAYIGSYVPAQSVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATENSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E L Sbjct: 740 EGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESL 799 Query: 843 YHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + Q D T+ S ++++ VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 800 SPNAAATQVD--------GTQMSLLSVAEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|299067203|emb|CBJ38399.1| methyl-directed DNA mismatch repair protein [Ralstonia solanacearum CMR15] Length = 882 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 314/914 (34%), Positives = 480/914 (52%), Gaps = 60/914 (6%) Query: 4 EFSSPQKLYSEQIDLEEN-LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLA 62 E S+P +++ID + + TPMM+Q++++KS +P +LVFYRMGDFYELFF+DA A Sbjct: 3 EHSAP----AQEIDPKYGPIDKHTPMMQQFLKLKSAHPHTLVFYRMGDFYELFFEDAEKA 58 Query: 63 SRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGN 122 +R L ITLT RG G+ I M GVP H Y+ KL+K+G +AICEQI P Sbjct: 59 ARLLDITLTSRGTTNGQPIRMAGVPFHAVEQYLAKLVKLGESVAICEQIGDPAT-----T 113 Query: 123 KSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWA------IAWIDISTGIFK 176 K V R VVR+VTPGTLT+ LLS +N+L+A+A+I + +AW+++ G + Sbjct: 114 KGPVERKVVRVVTPGTLTDAALLSDKVNNHLLAIAQIPGKRGAAPLVGLAWLNLVGGELR 173 Query: 177 ISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESR 236 + + ++L ++ RI P E++ + L+ + L P+ FD R Sbjct: 174 LMECSAEQLDRELERIRPAEVLADDATLNAVTFDVARTRL-------PDWHFDVEAGARR 226 Query: 237 IADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTL-----F 291 + + + ++ FG + AAA A+ T G R I T+ F Sbjct: 227 LREQLGVASLVAFGCETLTAALAAAGALLNYAAA------TQGQSLRHVIGLTVEHESEF 280 Query: 292 I--DSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLD 349 I D+A R NLE+ TL G +L +D T G RL + PL D R Sbjct: 281 IGLDTATRRNLELTETLRGQESPTLFSLLDTCATSMGSRLLRHWLHHPLRDRAVPQARQQ 340 Query: 350 SINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFL 409 +I + ++ L++ DV R RL + P+D++ +RD + + + Sbjct: 341 AIEVLLAGDW--QSLRGTLRTLSDVERITGRLALLSARPRDLSSLRDTLARLPEVRDQLP 398 Query: 410 KNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRD 469 +ND L G + +P+ L + + RDGG + G DA LDE R + + Sbjct: 399 QND-AAPLLGDLHAALAIPEDAHALLQCAVMAEPAAMVRDGGVIARGYDAGLDELRDISE 457 Query: 470 QSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTM 529 + + L+ + E T I NL++++N G++IEVT+ A+ + D + RQT+ Sbjct: 458 NCGQFLVDLEARERERTGIANLRVEYNRVHGFYIEVTNGQAAKVPDD------YRRRQTL 511 Query: 530 SNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDIS 589 N R+ T EL E++ +A + AL E +E L ++ L + +A D+ Sbjct: 512 KNAERYITPELKAFEDKALSAQDRALSREKYLYEDLLQKLLPHLAELKRIAAALAQADVL 571 Query: 590 IALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNS 649 LA A ++ RP + ++ + RHP+VE+ ++Q F+ANDC L + + Sbjct: 572 ATLAERAHALSWSRPALTDAPGIELTRARHPVVEQQVEQ-----FVANDCVL-----QET 621 Query: 650 GKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASG 709 KL L+TGPNMGGKSTF+RQ AL+V++A +G++VPA A IG +D++F+R+G+AD+LA G Sbjct: 622 RKLLLITGPNMGGKSTFMRQTALVVLLAYVGAFVPADAATIGPIDRIFTRIGAADDLAGG 681 Query: 710 RSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLA 769 RSTFMVEM E A+IL++AT S V++DEIGRGT+T DGL++AWA +L NR L A Sbjct: 682 RSTFMVEMTEAAAILHRATPNSLVLMDEIGRGTSTFDGLALAWAIARHLLSHNRSHTLFA 741 Query: 770 THFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVI 829 TH+ ELT L + + N L + +GI+FLH V G A SYG+QV +LAG+P VI Sbjct: 742 THYFELTQLPQEFAQAANVHLSAVEHGDGIVFLHAVQEGPASQSYGLQVAQLAGVPQPVI 801 Query: 830 SRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLSK-----NDKLFVEKIKCLNLDE 884 A L E+ +L + + S ++++K E + ++ D Sbjct: 802 RAARKRLAWLEQHSADTGATPQLDLFALPSDPSDDDVAKAAVPAASNALAEALDGIDPDS 861 Query: 885 MSPLTALKTLYAVK 898 M+P AL LY +K Sbjct: 862 MTPRDALDALYRLK 875 >gi|70726618|ref|YP_253532.1| DNA mismatch repair protein MutS [Staphylococcus haemolyticus JCSC1435] gi|90109858|sp|Q4L5Z9|MUTS_STAHJ RecName: Full=DNA mismatch repair protein mutS gi|68447342|dbj|BAE04926.1| DNA mismatch repair protein MutS [Staphylococcus haemolyticus JCSC1435] Length = 883 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 302/827 (36%), Positives = 470/827 (56%), Gaps = 48/827 (5%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + ++TPMM+QY++IKS D L+F+R+GDFYE+FF+DA ASR L ITLTKR I Sbjct: 1 MSNTTPMMQQYLKIKSQYQDCLLFFRLGDFYEMFFEDAKEASRVLEITLTKRDAKKENPI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+AN YI+ LI G+++AICEQ+E P + K +V+R VVR+VTPGT+ E Sbjct: 61 PMCGVPYHSANSYIETLINNGYKVAICEQMEDP-----KQTKGMVKREVVRVVTPGTVME 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFS 200 + +NY+++ + + +A+++ DISTG K + + D LI++I+ I+P EI+ + Sbjct: 116 QGGMDENQNNYILSFIKQDSNYALSYCDISTGELKATQIEDEDTLINEIVTINPNEIVVN 175 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 + E+ K ++ T + + + SIS++ Y + + + A Sbjct: 176 Q-EIDENLKKQIYLTTETITIRE-------SISDAS----YEVNQLTNNHMY-----LAT 218 Query: 261 AAAISYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQSLL 315 + Y+ TQ + + I Y + ++ +D A+ NLE+ ++ S++ +LL Sbjct: 219 QLLLDYVYHTQKRDLSHLETAITYAAVDFMK----MDYYAKRNLELTESIRLKSKKGTLL 274 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T G R + I PL + +I RL + F+ + I + ++ L D+ Sbjct: 275 WLMDETKTPMGARRLKQWIDRPLINKERIEERLSIVESFMNHFIERDTLRGYLNQVYDIE 334 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLK-NDLPEELRGAVEKLKKLPQSLEKT 434 R + R+ G +D+ ++ I NI +L ND+ ++E L+ L Q LE + Sbjct: 335 RLVGRVSYGNVNARDLIQLKHSISEIPNIKSLLESMNDVASNQFSSLEPLEDLLQVLEDS 394 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L ++ P +DGG + G LDE K +A LQ K E T IK+LKI Sbjct: 395 LI----EEPPISIKDGGLFKQGFSKQLDEYLEASKNGKDWLAQLQAKERERTGIKSLKIS 450 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N GYFIE+T ++ + SK + +QT+SN RF T EL + E+ I A + A Sbjct: 451 FNKVFGYFIEITRANLQGFEP---SKFGYHRKQTLSNAERFITDELKEKEDIILGAEDKA 507 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E + F L I +E L +++I+ +D + A +A++ NY +P ++ + Sbjct: 508 VDLEYQLFVRLREHIKTYTERLQKQAKIISELDCLQSFAEIAQKYNYVKPEFSDNKTLSL 567 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 ++ RHP+VE+ + ++ NDC L DK++ ++L+TGPNM GKST++RQ A+I Sbjct: 568 ENSRHPVVERVM---DYNDYVPNDCKL----DKDNF-IYLITGPNMSGKSTYMRQVAIIS 619 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMAQMG+YVP + A + I D++F+R+G+AD+L SG+STFMVEM+E L AT S +I Sbjct: 620 IMAQMGAYVPCNKAELPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTYATEDSLII 679 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 DEIGRGT+T DGL++A A IEY+ +T+ + L +TH+HELT L + L N + + Sbjct: 680 FDEIGRGTSTYDGLALAQAMIEYVAQTSHAKTLFSTHYHELTTLDQELPSLKNVHVAADE 739 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 +IFLHKV G D SYGIQV KLA LP+ VI+RA IL FE+ Sbjct: 740 YQGELIFLHKVKDGAVDDSYGIQVAKLANLPDEVINRAQVILDAFEQ 786 >gi|313676390|ref|YP_004054386.1| DNA mismatch repair protein muts [Marivirga tractuosa DSM 4126] gi|312943088|gb|ADR22278.1| DNA mismatch repair protein MutS [Marivirga tractuosa DSM 4126] Length = 867 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 303/884 (34%), Positives = 491/884 (55%), Gaps = 39/884 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M+QY +IKS P +L+ +R+GDFYE F +DA+ AS+ L I LTKR I + G Sbjct: 10 TPLMKQYNQIKSKYPGALLLFRVGDFYETFGEDAVKASKVLNIILTKRANGSASHIELAG 69 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H ++Y+ KL++ GHR+AIC+Q+E P + K +V+R V LVTPG +D +L Sbjct: 70 FPHHAMDNYLPKLVRAGHRVAICDQLEDP-----KSVKGIVKRGVTELVTPGVSFDDNVL 124 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 +NYL ++ + +A++DISTG F ++ N + + P EII+S+ Sbjct: 125 ETGRNNYLASIHFSKNTLGVAFLDISTGEFMTASGNASYIDKLLQGFQPSEIIYSKSARE 184 Query: 206 HAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 H +K F NV + ++ FD + ++ + ++ FG + E AA AI Sbjct: 185 HFSHK--FSDDYNVHHLEDWIYAFD--FAYEKLTKQFKTNSLKGFGIENLEEGIIAAGAI 240 Query: 265 -SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 Y+++T+ I R + + +++D NLE++ L++ +D ++T Sbjct: 241 LHYLEETEHKKIEHIASISRIEEEKYVWMDKFTIRNLELVYP-QQEGGIPLIQILDKTLT 299 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G R + + P+ D I RL + F N L + LKS DV R +S++ + Sbjct: 300 PMGSRQIKKWMVLPVKDKAVIEERLQIVEAFHSNQDLTEQLSASLKSMGDVERLISKVAV 359 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK---LPQSLEKTLSSMLS 440 GR P+++ ++ + L + LK L E A++KL L + L + + S L Sbjct: 360 GRVNPRELNQLKKALG-----LMVPLKKALEESEEQALKKLSNQINLCEYLYELIDSQLM 414 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 +D P G +R+G D LD+ + + K + LQ + E+T I +LK+ +N G Sbjct: 415 EDAPLHTNQGNLIREGVDPELDDLKKIAFSGKDYLLQLQKREMEKTGITSLKVAYNKVFG 474 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y++EVT+S + ++ +I +QT+ N R+ T EL + E +I A + ++IE Sbjct: 475 YYLEVTNSHKDKVPQE------WIRKQTLVNAERYITEELKEYEEKILGAEDKMVVIEQR 528 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F+ L ++ + +++IA +D ++ A +A+ +Y +P I +T +K GRHP Sbjct: 529 IFQSLLQNAMDFVSPIQQNAKIIAQVDCLLSFAEIARANDYVKPQISETTALDIKLGRHP 588 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 ++E+ L + +I ND L D S ++ ++TGPNM GKS LRQ ALIV+MAQMG Sbjct: 589 VIEQQLPH--GEEYIPNDVFL----DNESQQIMIITGPNMAGKSALLRQTALIVLMAQMG 642 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 YVPA A IG+VDK+F+RVG++DNL+ G STFMVEM ETASILN +++S V++DEIGR Sbjct: 643 CYVPAKSAEIGLVDKVFTRVGASDNLSKGESTFMVEMTETASILNNLSDRSLVLMDEIGR 702 Query: 741 GTATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GT+T DG+SIAW+ +E+LH ++ + L ATH+HEL L+ R N + V + + Sbjct: 703 GTSTYDGVSIAWSIVEFLHNHPKSKAKTLFATHYHELNQLAHDFPRIKNYNVSVKEIDGE 762 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 IIFL K+ G ++HS+GI V LAG+PN V+ RA +I+ EK ++ + +++ E+ Sbjct: 763 IIFLRKLKKGGSEHSFGIHVAHLAGMPNPVVLRANEIMHHLEKDKIRDKANRKMH--EVP 820 Query: 859 TKESKNNLSKNDKLFVE---KIKCLNLDEMSPLTALKTLYAVKA 899 + N+ + D + E + L+++ MSP+ AL L +K+ Sbjct: 821 KNNYQLNMFEADPVLSEIKDLLDKLDINSMSPVEALLKLNELKS 864 >gi|270157146|ref|ZP_06185803.1| DNA mismatch repair protein MutS [Legionella longbeachae D-4968] gi|289164450|ref|YP_003454588.1| DNA mismatch repair protein MutS [Legionella longbeachae NSW150] gi|269989171|gb|EEZ95425.1| DNA mismatch repair protein MutS [Legionella longbeachae D-4968] gi|288857623|emb|CBJ11463.1| DNA mismatch repair protein MutS [Legionella longbeachae NSW150] Length = 845 Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust. Identities = 307/878 (34%), Positives = 484/878 (55%), Gaps = 50/878 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ IKS PD L+ YRMGDFYELFF+DA AS+ L +TLT RG+ K IPM G Sbjct: 6 TPMMQQYLRIKSEYPDMLLLYRMGDFYELFFEDAKRASQLLDLTLTHRGQSADKPIPMAG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H +Y+ +LIK G +AICEQI P A +G V R V R++TPGT+ ++ LL Sbjct: 66 VPYHAVENYLARLIKKGESVAICEQIGDP--ATSKGP---VERQVTRIITPGTVVDEALL 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEKEL 204 N L+A+ + + + +AW+D+S G F + +H ++L +++ R+ P E++ E Sbjct: 121 DAKKDNLLLAIHQQKQKIGLAWVDLSGGRFHLLELSHSNQLGAELSRLQPAELLLQENS- 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAAAAA 263 EY S F +P F ++ R+ + +++ + FG AA Sbjct: 180 PLEEYCSPFPV-----KLRPGWEFQFDNAQKRLCEQFSVNDLSAFGERDYPTALVAAGTL 234 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 +SY+ TQ P + E+ L +D+A + +LE+ +SG +E +L+ +D + Sbjct: 235 LSYLHTTQKQALPHLTTVTFENTHDYLQLDAATQKHLELFENISGGQENTLISIVDKTAC 294 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFI---QNPILINPIQKILKSSPDVPRSLSR 380 G RL + PL I R ++I I Q+P+L +L+ DV R +SR Sbjct: 295 SMGSRLLKRWLGRPLKQHESIKERQEAIEEIIKLQQSPVL----NHLLRQICDVERIVSR 350 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + + P+D+ V+ + ++ + L++ L+N+ + + L LP+ L++ LS+ + Sbjct: 351 IALKSARPRDLFVLNNTLKL-LPELSIALENNQGPLITQLKKYLSPLPE-LQELLSAAII 408 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 ++ P RDGG + G D LDE R L ++ + L+ + + T + LK NN G Sbjct: 409 ENPPMLIRDGGVIASGFDEELDELRMLSTRAHEKLNQLEQQEKQYTGLSTLKFGFNNVQG 468 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IE++ + A + + +QT+ N+ R+ T EL E ++ +A AL E Sbjct: 469 YYIELSKTQAE------KVPPHYHRKQTLKNVERYITPELKQFEEKVLSAQVKALAREKW 522 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 +E L I + L +Q +A +D+ LA A+ N+ P + + +K GRHP Sbjct: 523 LYEHLLLEIQKNINELTYLAQGLAQLDVLTTLAERAQSLNWTCPKLIPDSQLSIKAGRHP 582 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 ++E L+++ FIAND L S + L+TGPNMGGKST++RQ ALIV++A +G Sbjct: 583 VIEHLLQER----FIANDLYLD-----PSQNILLITGPNMGGKSTYMRQTALIVLLAHIG 633 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA+ +G +D++F+R+G++D+LASGRSTFMVEM ETA IL QAT+QS V++DEIGR Sbjct: 634 SFVPATAVTLGPIDRIFTRIGASDDLASGRSTFMVEMTETAQILRQATHQSLVLIDEIGR 693 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GT+T DG+++A+A+ YL T + L +TH+ ELT L + N LQ S I+ Sbjct: 694 GTSTYDGMALAYASCTYLATTIKAYTLFSTHYFELTHLPQQWPCIRNVHLQASLDTGRIV 753 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 FL++V PG A+ SYG++V +LAG+P+ V+ A LK Q L P Q K Sbjct: 754 FLYRVEPGYANRSYGLEVAELAGIPDDVLKIARTHLK---------QMQTNLPAPHAQPK 804 Query: 861 ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ S ++++ L+ D ++ AL +Y K Sbjct: 805 VQEHFQSP----ILQELAQLDPDRLTAREALDLIYRFK 838 >gi|309379836|emb|CBX21612.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 865 Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust. Identities = 314/887 (35%), Positives = 474/887 (53%), Gaps = 49/887 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM+QY+ IKS + D LVFYRMGDFYELF DDA+ A++ L ITLT RG+ G I M G Sbjct: 7 SPMMQQYLAIKSQHADKLVFYRMGDFYELFLDDAVEAAKLLDITLTTRGQMDGVPIKMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ +L+K+G +A+CEQ+ + K V R VVR+VTPGTLT+ L Sbjct: 67 VPFHAAEQYLARLVKMGKSVAVCEQV-----GEVGAGKGPVERKVVRIVTPGTLTDAAFL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 ++N + AV + AIAW + +G FK + D+L ++ R+ EI+ E + Sbjct: 122 EDKETNRIAAVNIDKKHIAIAWASLQSGEFKTKLTTADKLADELARLQAAEILLPEGKSL 181 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG---SFSQVEKTAAAA 262 +++ T N+ P F + + +Y+ + FG + AA A Sbjct: 182 PDGFQA---TSANITRLNPWQFAADA-GAKLLTEYFGCQDLHGFGLDGKEHEAAVGAAGA 237 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 ++YI+ TQ + + E + +D+A R NLEI +TLSG + +L +D Sbjct: 238 LLNYIRLTQNLMPQHLDGISLETDSQYIGMDAATRRNLEITQTLSGKKSPTLFSILDGCA 297 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G RL A + PL I R +++ P+Q LKS D+ R +R+ Sbjct: 298 THMGSRLLALWLHHPLRSRAHIRARQEAVAALESQ---YKPLQCRLKSIADIERIAARIA 354 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL-PQSL--EKTLSSML 439 +G P+D+A +RD + + I +L E +E LK + P++L +TL + + Sbjct: 355 VGNARPRDLAALRDSLFALSEI-------ELSAEGSSLLETLKAVFPETLPVAETLKAAV 407 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + + +DGG + G A LDE R +++ + L+ + E T + LK++ N Sbjct: 408 MPEPAIWLKDGGVINQGYSAELDELRHIQNHGDEFLLDLEARERERTGLSTLKVEFNRVH 467 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 G++IE++ + A D + RQT+ N RF T EL E+++ A AL +E Sbjct: 468 GFYIELSKTQAGQAPAD------YQRRQTLKNAERFITPELKTFEDKVLTAQEQALALEK 521 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 FE L + L A++ A +D+ A +A E+ + RP + +++GRH Sbjct: 522 RLFEALLKEVQTALPQLQKAAKAAAALDVLSTFAAIAAERGFVRPEFADYPVIRIENGRH 581 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE+ ++ F AN DL N K+ +L LLTGPNMGGKST++RQ ALIV++A Sbjct: 582 PVVEQQVRH-----FTANHTDL---NHKH--RLILLTGPNMGGKSTYMRQVALIVLLAHT 631 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPA A IG VD++F+R+G++D+LAS RSTFMVEM ETA IL+ AT QS V++DE+G Sbjct: 632 GSFVPADSARIGPVDQIFTRIGASDDLASNRSTFMVEMSETACILHHATEQSLVLMDEVG 691 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGT+T DGL+IA A +L + N+ ATH+ ELT L ++ N L + I Sbjct: 692 RGTSTFDGLAIAHAVAGHLLQKNKSFSFFATHYFELTRLPETCAAAVNMHLSALEQGRDI 751 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY----- 854 +FLH++ PG A SYGI V KLAGLPN + A L E Q + ++ Sbjct: 752 VFLHQIQPGPAGKSYGIAVAKLAGLPNRALKAAQKYLDELEAQAADAQPQLDIFNLAQEG 811 Query: 855 ---PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + T + S++D + E + L+ D+++PL AL LY +K Sbjct: 812 RGGSDAGTPADDDAGSRSDGILTETLNRLDPDKLTPLEALSELYRLK 858 >gi|260172807|ref|ZP_05759219.1| DNA mismatch repair protein MutS [Bacteroides sp. D2] gi|315921093|ref|ZP_07917333.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313694968|gb|EFS31803.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 886 Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust. Identities = 300/886 (33%), Positives = 489/886 (55%), Gaps = 41/886 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+Q++++K+ +PD+++ +R GDFYE + DA++AS LGITLTKR GK + M G Sbjct: 23 TPMMKQFLDLKAKHPDAVMLFRCGDFYETYSTDAIVASEILGITLTKRANGKGKTVEMAG 82 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KL++ G R+AIC+Q+E P KK LV+R + LVTPG D +L Sbjct: 83 FPHHALDTYLPKLVRAGKRVAICDQLEDPKMTKK-----LVKRGITELVTPGVSINDNVL 137 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF--SEKE 203 + ++N+L AV + +A++DISTG F + D + + P+EI+F ++ Sbjct: 138 NYKENNFLAAVHFGKASCGVAFLDISTGEFLTAEGPFDYIDKLLNNFAPKEILFERGKRL 197 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + + S F T + F + + ++ ++ + FG A+ A Sbjct: 198 MFEGNFGSKFFTF-----ELDDWVFTETTAREKLLKHFETKNLKGFGVEHLKNGIIASGA 252 Query: 264 I-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 I Y+ TQ I R + + +D +LE++ ++ SLL ID +I Sbjct: 253 ILQYLTMTQHTQIGHITSLARIEEDKYVRLDKFTVRSLELIGNMNDGG-SSLLNVIDRTI 311 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 + G RL + PL D IN RL+ + +F + P I++ L D+ R +S++ Sbjct: 312 SPMGARLLKRWMVFPLKDEKPINERLNVVEYFFRQPEFKELIEEQLHLIGDLERIISKVA 371 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 +GR P+++ ++ +++ I L+ D L E+L L + ++ +++D Sbjct: 372 VGRVSPREVVQLKVALQAIEPIKEACLEAD-NASLNRIGEQLN-LCIPIRDRIAKEINND 429 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P GG ++DG +A LDE R + K + +Q + +E T I +LK+ +NN GY+ Sbjct: 430 PPLLINKGGVIKDGVNADLDELRQISYSGKDYLLKIQQRESESTGIPSLKVAYNNVFGYY 489 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IEV + + K+ +I +QT+ N R+ T EL + E +I A + L +E + + Sbjct: 490 IEVRNVHKDKVPKE------WIRKQTLVNAERYITQELKEYEEKILGAEDKILALETQLY 543 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 L A+ E + + IA +D ++ A +A+E Y RP+I+++ ++ GRHP++ Sbjct: 544 TDLVQALTEFIPQIQVNANQIARLDCLLSFANVARENRYIRPVIEDNDVLDIRQGRHPVI 603 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 EK L + +IAND L D + ++ ++TGPNM GKS LRQ ALI ++AQ+GS+ Sbjct: 604 EKQLP--IGEKYIANDVML----DSTTQQIIIITGPNMAGKSALLRQTALITLLAQIGSF 657 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA AHIG+VDK+F+RVG++DN++ G STFMVEM E A ILN +++S V+ DE+GRGT Sbjct: 658 VPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNVSSRSLVLFDELGRGT 717 Query: 743 ATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 +T DG+SIAWA +E++HE + R L ATH+HEL ++ KS KR N + V + + +I Sbjct: 718 STYDGISIAWAIVEHIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEVDNKVI 777 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 FL K+ G ++HS+GI V K+AG+P +++ RA +ILK E N++ P + Sbjct: 778 FLRKLERGGSEHSFGIHVAKMAGMPKSIVKRANEILKQLES---DNRQQGISRKPLTEVS 834 Query: 861 ESKNNLSKNDKLFVEKIKC------LNLD--EMSPLTALKTLYAVK 898 E++ + + + I C LNLD ++P+ AL L +K Sbjct: 835 ENRGGMQLSFFQLDDPILCQIRDEILNLDVNNLTPIEALNKLNDIK 880 >gi|188534814|ref|YP_001908611.1| DNA mismatch repair protein MutS [Erwinia tasmaniensis Et1/99] gi|238690902|sp|B2VG22|MUTS_ERWT9 RecName: Full=DNA mismatch repair protein mutS gi|188029856|emb|CAO97740.1| DNA mismatch repair protein [Erwinia tasmaniensis Et1/99] Length = 853 Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust. Identities = 307/888 (34%), Positives = 485/888 (54%), Gaps = 53/888 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 NL S TPMM+QY+ +K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 8 NLSSHTPMMQQYLRLKAEHPEILLFYRMGDFYELFYDDAKRASQLLEISLTKRGSSAGEP 67 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM GVP H +Y+ KL+ +G +AICEQI P +K V R VVR+VTPGT++ Sbjct: 68 IPMAGVPYHAVENYLAKLVHLGESVAICEQIGDPAL-----SKGPVERKVVRIVTPGTIS 122 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIF 199 ++ LL+ N L A+ + + A +DIS+G F+++ ++ + + +++ R +P E+++ Sbjct: 123 DEALLNERQDNLLAAIWQSTRGFGYATLDISSGRFRLAEPTDRETMAAELQRTNPAELLY 182 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKT 258 E ++ ++ + + N + +++ + +R T D G Q Sbjct: 183 PE------DFAAM-DLIENRRGLRRRALWEYELDTARQQLNLQFATRDLSGFGVEQAHHA 235 Query: 259 --AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 AA + Y+K TQ + P I E Q + +D+A R NLEI + L+G + +L Sbjct: 236 LRAAGCLLQYVKDTQRTSLPHIRSLTIERQQDGIIMDAATRRNLEITQNLAGGSDNTLAS 295 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D ++T G R+ + PL ++ I R SI +Q+ L + + +L+ D+ R Sbjct: 296 VLDKTVTPMGSRMLKRWLHMPLRNAQTIALRQQSIRT-LQD--LNDSLPPLLRQVGDLER 352 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKT 434 L+RL + P+D+A +R + + N +D + LR + + +L + LE Sbjct: 353 ILARLALRTARPRDLARMRHAFQQLPQLNNELADSDNAHLQTLRSQMGEFTELRELLEHA 412 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + + P RDGG + G + LDE R+L D + + L+++ E+ + LK+ Sbjct: 413 IV----ETPPVLVRDGGVIAPGYNQELDEWRALADGATDYLDRLEIREREKLGLDTLKVG 468 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N GY+I+V+ + ++ ++ RQT+ N R+ EL + E+++ + A Sbjct: 469 FNGVHGYYIQVSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSKGKA 522 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L +E +E L + ++ +L +++ +A +D+ LA A NY P + + + Sbjct: 523 LSLEKALYEQLFDRLLPHLAALQDSAAALAELDVLTNLAERAWTLNYSCPTLSDKPGIKL 582 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 GRHP+VE+ LK PFIAN LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 583 TGGRHPVVEQVLKD----PFIANPLSLSPQR-----RMLVVTGPNMGGKSTYMRQAALIT 633 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 +MA +GS+VPA A IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V+ Sbjct: 634 LMAHIGSFVPAEQAIIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVL 693 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 694 MDEIGRGTSTYDGLSLAWACAESLANRIKAMTLFATHYFELTTLPEQIEGVANVHLDAVE 753 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 + I F+H V G A SYG+ V LAG+P VI RA LK E L Sbjct: 754 HGDTIAFMHSVQEGAASKSYGLAVAALAGVPKDVIKRARQKLKELEALSGSAAS------ 807 Query: 855 PEIQTKESKNNLS---KNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 T+ + L + VE ++ L+ D +SP AL+ +Y +K+ Sbjct: 808 ----TRADGSQLPLLVEETSPAVEALEALDPDSLSPRQALEWIYRLKS 851 >gi|323526557|ref|YP_004228710.1| DNA mismatch repair protein MutS [Burkholderia sp. CCGE1001] gi|323383559|gb|ADX55650.1| DNA mismatch repair protein MutS [Burkholderia sp. CCGE1001] Length = 891 Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust. Identities = 312/893 (34%), Positives = 473/893 (52%), Gaps = 52/893 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ IK+ +P +LVFYRMGDFYELFFDDA A+R L +TLT+RG G I M G Sbjct: 15 TPMMQQYLRIKAEHPGTLVFYRMGDFYELFFDDAEKAARLLDLTLTQRGASAGNPIKMAG 74 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H Y+ KL+K+G +AICEQI P +K V R VVR+VTPGTLT+ LL Sbjct: 75 VPHHAVEQYLAKLVKLGESVAICEQIGDPAT-----SKGPVERKVVRVVTPGTLTDAALL 129 Query: 146 SPTDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 S +L+A+ I T +AW+++++G +++ D++ + + RIDP EI+ Sbjct: 130 SDKSDVFLLAMCVAHNRRGIATSVGLAWLNLASGALRLAEVAPDQVAAALERIDPAEILV 189 Query: 200 SEKELSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFGSFS----- 253 ++ + A+ S G A+ + P FD + R+ D + +D FG+ S Sbjct: 190 AD---TAADSASWTPPTGARALTRVPAWHFDVASGTQRLCDQLEVAGLDGFGAHSLTCAC 246 Query: 254 -QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 AA + ++ + V + Y E E I +D A R NLEI +TL G+ Sbjct: 247 GAAGALLLYAAATQGQQLRHVRSLKVEY-ESEYIG----LDPATRRNLEITQTLRGTESP 301 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL--INPIQKILKS 370 +L +D T G RL + P +S +R +I ++ P ++ ++ L+ Sbjct: 302 TLCSLLDTCCTTMGSRLLRHWLHHPPRESAVARSRQQAIGALLEAPASADLDSLRGALRH 361 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS 430 D+ R RL + P+D++ +RD + + E ++ + PQ+ Sbjct: 362 ISDIERITGRLALLSARPRDLSSLRDTFIALPELRARLAAVSSNAESLARIDASLEPPQA 421 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 + L+ ++ + RDGG + G DA LDE R + + + + L+ + T I N Sbjct: 422 CVELLTRAIAPEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLETRERARTGIGN 481 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 L++++N G++IEVT + D + RQT+ N R+ T EL E++ +A Sbjct: 482 LRVEYNKVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTFEDKALSA 535 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 AL E ++ L A++ + +A +D+ A A A+ ++ P Sbjct: 536 QERALARERSLYDALLQALLPFIPDCQRVASALAELDLLAAFAERARALDWVAPSFSLEA 595 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 ++ GRHP+VE ++Q FIANDC L+ KL L+TGPNMGGKSTF+RQ Sbjct: 596 GIEIEQGRHPVVEAQVEQ-----FIANDCTLTAER-----KLLLITGPNMGGKSTFMRQT 645 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI ++A +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+ILN AT Q Sbjct: 646 ALIALLAYVGSYVPARRAAFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILNDATPQ 705 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V++DEIGRGT+T DGL++AWA +L N C L ATH+ ELT L + N L Sbjct: 706 SLVLMDEIGRGTSTFDGLALAWAIARHLLAHNGCHTLFATHYFELTQLPAEFPQAANVHL 765 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN---Q 847 + GI+FLH V G A+ SYG+QV +LAG+PN VI A L E+ Q Sbjct: 766 SAVEHGHGIVFLHAVNEGPANQSYGLQVAQLAGVPNAVIRAARKHLAYLEQQSAGQPAPQ 825 Query: 848 KDMRLYYPEIQTKESKN-----NLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 D+ P + +++ + N S + VE+++ ++ +++ P AL LY Sbjct: 826 LDLFAAPPPLLLEDADDEPHTANESPAMQALVERLRGIDPNDLRPREALDLLY 878 >gi|126442142|ref|YP_001059585.1| DNA mismatch repair protein MutS [Burkholderia pseudomallei 668] gi|166232118|sp|A3NB64|MUTS_BURP6 RecName: Full=DNA mismatch repair protein mutS gi|126221635|gb|ABN85141.1| DNA mismatch repair protein MutS [Burkholderia pseudomallei 668] Length = 891 Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust. Identities = 305/883 (34%), Positives = 458/883 (51%), Gaps = 40/883 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ IKS +PD+LVFYRMGDFYELFF+DA A+R L +TLT+RG G I M G Sbjct: 21 TPMMQQYLRIKSEHPDTLVFYRMGDFYELFFEDAEKAARLLDLTLTQRGASAGTPIKMAG 80 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H Y+ KL+K G AICEQI P +K V R VVR+VTPGTLT+ LL Sbjct: 81 VPHHAVEQYLAKLVKFGESAAICEQIGDPAT-----SKGPVERKVVRVVTPGTLTDAALL 135 Query: 146 SPTDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 S +L+A+ + + +AW+++++G +++ D+L + + RI P EI+ Sbjct: 136 SDKSDVFLLALCVGHNKRGVASNIGLAWLNLASGALRLAELAPDQLGAALERIRPAEILA 195 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 ++ + +S+ +G + P FD + R+ D + ++D FG+ + Sbjct: 196 ADGTI-----ESVPAGMGAITRV-PAWHFDIASGTQRLCDQLEVASLDGFGAQALTSANG 249 Query: 260 AAAAIS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA A+ Y TQ + + E+ + +D + R NLE+ TL G+ +L + Sbjct: 250 AAGALLIYAAATQGQQLRHVRSLKVENESEYIGLDPSTRRNLELTETLRGTESPTLYSLL 309 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP--ILINPIQKILKSSPDVPR 376 D T G RL + P S R +I + P ++ ++ L+ DV R Sbjct: 310 DTCCTAMGSRLLRHWLHHPPRASVAAQARHQAIGALLDAPPNAGLDSLRSALRQIADVER 369 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 RL + P+D++ +RD + + + G + + P L+ Sbjct: 370 ITGRLALLSARPRDLSSLRDTFAALPALRERVAEIASNAAALGRLGAALEPPPGCLDLLT 429 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 ++ + RDGG + G DA LDE R + + + + L+ + T I NL++++N Sbjct: 430 RAIAAEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLETRERARTGISNLRVEYN 489 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 G++IEVT + D + RQT+ N R+ T EL E++ +A AL Sbjct: 490 KVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTFEDKALSAQERALA 543 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 E ++ + A++ E + +A +D+ A A A+ ++ P + + Sbjct: 544 RERALYDGVLQALLPHIEGCQRVASGLAELDLLAAFAERARTLDWVAPEFTDEIGIEIDQ 603 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE ++Q FIANDC L+ KL L+TGPNMGGKSTF+RQ ALI +M Sbjct: 604 GRHPVVEAQVEQ-----FIANDCALNPER-----KLLLITGPNMGGKSTFMRQTALIALM 653 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+ILN AT S V++D Sbjct: 654 AYVGSYVPAKAARFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILNDATPHSLVLMD 713 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DGL++AWA +L NRC L ATH+ ELT L + N L + Sbjct: 714 EIGRGTSTFDGLALAWAIARHLLSHNRCYTLFATHYFELTQLPAEFPQAANVHLSAVEHG 773 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL-YHHNQKDMRLYYP 855 GI+FLH V G A+ SYG+QV +LAG+P VI A L E+ + L+ Sbjct: 774 HGIVFLHAVEEGPANQSYGLQVAQLAGVPAPVIRAARKHLAHLEQQSAAQATPQLDLFAA 833 Query: 856 EIQTKESKNN---LSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 E + N + +E++ L+ D++ P AL LY Sbjct: 834 PTVVDEPECNEPPAAATPHPALERLLELDPDDLKPRDALDLLY 876 >gi|88705823|ref|ZP_01103532.1| DNA mismatch repair protein MutS [Congregibacter litoralis KT71] gi|88699894|gb|EAQ97004.1| DNA mismatch repair protein MutS [Congregibacter litoralis KT71] Length = 848 Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust. Identities = 310/886 (34%), Positives = 485/886 (54%), Gaps = 57/886 (6%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+Q++ IK +P L+FYRMGDFYELF++DA A+ L ITLT RGK G+DIPM GVP Sbjct: 1 MMQQFLRIKRDHPKELLFYRMGDFYELFYEDAQRAAELLDITLTARGKSAGEDIPMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A Y+ +L+K G +AI EQI P +K V R VVR+VTPGTL+++ LL Sbjct: 61 YHAAEAYLARLVKAGVSVAIAEQIGDPAT-----SKGPVERKVVRVVTPGTLSDEALLEE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSEKELSH 206 ++A+ + + +A++D+ +G F++ + L+ +I R+DP E+++ H Sbjct: 116 KREQLIVALIAQQNHYGLAYLDLGSGRFRLMELEGEEALLGEIERLDPAELLY------H 169 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS-FSQVEKTAAAAAIS 265 E + T A +QP FD +E + + + + FG + AA IS Sbjct: 170 EELQQGAVTNRPGARSQPAWEFDLESAERNLREQFQTHDLRGFGCEHLHLGLAAAGCLIS 229 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y++ TQ P I E ++++ +D+A R NLEI R L+G +L+ +D T Sbjct: 230 YVRDTQRSQLPHITAIAAEMRENSVVLDAATRRNLEIDRNLAGGDSHTLMSVMDRCRTAM 289 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 G R + PLTD + R D++ N ++ +L+ DV R +R+ +G Sbjct: 290 GSRCLRRWLHRPLTDVATLTARQDAVAALRDN-YRFESLRDVLRPIGDVERITTRVALGS 348 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEE----LRGAVEKLKKLPQSLEKTLSSMLSD 441 P+D+ + ++S L+N P E LR L P L L + D Sbjct: 349 ARPRDLTRLLFALQSVPA-----LRNATPTEDAVLLRETAVALGGFP-GLVDLLERAIID 402 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + P RDGG + G DA LDE RS+ + + + ++ + E T + +LK+ +N GY Sbjct: 403 NPPVVLRDGGVIATGFDAELDELRSISENAAGFLVDIETRERERTGLASLKVGYNRVHGY 462 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IE++ S + E + RQT+ N+ RF T EL + E++ ++ + AL E + Sbjct: 463 YIELSRSQSD------EVPAEYQRRQTLKNVERFITPELKEFEDKALSSKSRALAREKQL 516 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 + + + E E+L ++ +A +D+ LA ++ + CRP ++ + GRH + Sbjct: 517 YADVIVTLQESLEALRQSAAAMAELDVYATLAERSQSLDLCRPEFSDTPKLDIDQGRHLV 576 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE+ L++ PFIAND L+ S K+ L+TGPNMGGKST++RQNA+I ++A +GS Sbjct: 577 VEQVLEE----PFIANDTLLN-----ESRKMLLITGPNMGGKSTYMRQNAVIALLAHVGS 627 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA + VD++F+R+G+AD+LASGRSTFMVEM ETA+IL+ A+ +S V++DE+GRG Sbjct: 628 FVPAKAVTLSTVDRIFTRIGAADDLASGRSTFMVEMTETANILHNASERSLVLMDEVGRG 687 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 T+T DGLS+AWA +L E R L ATH+ ELT L++ L N L + E ++F Sbjct: 688 TSTFDGLSLAWAAALHLAEKTRAFTLFATHYFELTALAEQLPTVANVHLDAVEHREHVVF 747 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE-KLYHHNQKDMRLYYPEIQTK 860 +H++ G A+ S+G+QV KLAG+P +V+ A L+ E K H+ D + Sbjct: 748 MHRIQEGPANRSFGLQVAKLAGVPGSVLHAAAGKLQELESKALEHSAPD--------EAS 799 Query: 861 ESKNNLSKNDKLFVEK--------IKCLNLDEMSPLTALKTLYAVK 898 ES + + D LF E ++ + D +SP AL LY+++ Sbjct: 800 ESPAYVPQGD-LFAESASHPALRLLRETDPDALSPREALAILYSLR 844 >gi|229544351|ref|ZP_04433410.1| DNA mismatch repair protein MutS [Bacillus coagulans 36D1] gi|229325490|gb|EEN91166.1| DNA mismatch repair protein MutS [Bacillus coagulans 36D1] Length = 875 Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust. Identities = 305/896 (34%), Positives = 509/896 (56%), Gaps = 56/896 (6%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPM++QY+++K+ D+ +F+R+GDFYE+FF+DA+ AS+ L ITLT R + I Sbjct: 12 MAAYTPMIQQYLQVKAEYQDAFLFFRLGDFYEMFFEDAIKASQELEITLTSRDGGGDEKI 71 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A+ YI++LI G+++AICEQ+E P AK +V+R V++L+TPGTL E Sbjct: 72 PMCGVPYHSASTYIEQLIDKGYKVAICEQMEDPKLAK-----GVVKREVIQLITPGTLME 126 Query: 142 DQLLSPTDSNYLMAVAR-IRTEWAIAWIDISTGIFK--ISTSNHDRLISDIMRIDPREII 198 + L+ +++Y+ +VA +AIA+ID+STG + + + +++++ I +E + Sbjct: 127 GKSLAEKENHYIASVASPADGNFAIAYIDLSTGEGRACLLEGPFEEVLNELASIGAKEAV 186 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + EY L + GN+ ++ D ++ E ++ + Sbjct: 187 VDPE--FPDEYARLMKNTGNITISFET---DTAVKEG--------FERLLPQLEPELLRL 233 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKT 317 AAA ++Y+ +TQ + + E +++ L ID ++ NLE+ T+ G ++ SLL Sbjct: 234 AAARLLNYLFRTQKRSLDHLQPVEMYEVRRFLNIDYYSKRNLELTETIRGQGKKGSLLWL 293 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D ++T GGRL + I PL KI RL + F+ + I++ LK D+ R Sbjct: 294 LDETMTAMGGRLLKQWIGRPLLKQEKIEARLQMVETFLNHYFEREDIRERLKEVYDLERL 353 Query: 378 LSRLKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R+ G +D+ ++ ++ GI + L++ ++L ++ ++L LE+ + Sbjct: 354 AGRVAFGNVNARDLIQLKCSLQQIPGIRAVMESLESPESKKLAALLDPCEELTDLLERAI 413 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 D+ P ++GG +RDG + LD R K+ IASL+ E T IK+LK+ + Sbjct: 414 E----DNPPVSVKEGGMIRDGYNEELDRYRDASKNGKQWIASLERDERERTGIKSLKVGY 469 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+IEVT ++ +L++ R+ +QT++N RF T EL + E I A + Sbjct: 470 NRVFGYYIEVTKANLHLLEEG-----RYERKQTLANAERFITPELKEKEALILQAEERMI 524 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E E F + + E L ++ ++ ID+ + A+++++++Y +P+ + Sbjct: 525 DLEYELFTEIRAHVKEFIPRLQRLAKAVSTIDVLQSFAVVSEKRHYTKPVFREDGVLKIT 584 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 +GRHP+VEK L QS ++ NDC + D+N ++ L+TGPNM GKST++RQ AL VI Sbjct: 585 EGRHPVVEKVLDSQS---YVPNDCLM----DENR-EILLITGPNMSGKSTYMRQIALTVI 636 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +AQ+G +VPA A + + D++F+R+G+AD+L SG+STFMVEM+E + + AT +S ++ Sbjct: 637 LAQIGCFVPAREAELPVFDRIFTRIGAADDLISGQSTFMVEMLEAKNAIANATERSLILF 696 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DG+++A A IEY+H+ + L +TH+HELT LS L + N + + Sbjct: 697 DEIGRGTSTYDGMALAQAMIEYIHDEIGAKTLFSTHYHELTALSTELGKLQNVHVSAMEQ 756 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL--- 852 N ++FLHK+ G AD SYGI V KLAGLP VI RA IL E + + M Sbjct: 757 NGKVVFLHKIKEGPADKSYGIHVAKLAGLPEQVICRAEKILHALEN-QDNGETQMNPPEA 815 Query: 853 ----------YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ E +T K +K K+ +++I+ L+L EM+PL A+ LY ++ Sbjct: 816 AAATEPAQLSFFEEPETPRQKTVEAKERKV-LKQIRELDLLEMTPLAAMNALYEIQ 870 >gi|310766654|gb|ADP11604.1| DNA mismatch repair protein MutS [Erwinia sp. Ejp617] Length = 858 Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust. Identities = 309/888 (34%), Positives = 487/888 (54%), Gaps = 49/888 (5%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 ++ S TPMM+QY+ +K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G Sbjct: 11 DKEFSSHTPMMQQYLRLKAEHPEILLFYRMGDFYELFYDDAKRASQLLEISLTKRGASAG 70 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM GVP H +Y+ KL+++G +AICEQI P +K V R VVR+VTPGT Sbjct: 71 EPIPMAGVPYHAVENYLSKLVQLGESVAICEQIGDPAL-----SKGPVERKVVRIVTPGT 125 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL+ N L A+ + A +DIS+G F+++ ++ + + +++ R +P E+ Sbjct: 126 ISDEALLNERQDNLLAAIWHSPRGFGYATLDISSGRFRLAEPTDLETMAAELQRTNPAEL 185 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVE 256 ++ E + A L E N + +++ + +R T D G Q Sbjct: 186 LYPEDFGAMA----LIE---NRRGLRRRPLWEYELDTARQQLNLQFATRDLSGFGVEQAH 238 Query: 257 KT--AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSL 314 AA + Y+K TQ + P I E Q + +D+A R NLEI + L+G E +L Sbjct: 239 HALRAAGCLLQYVKDTQRTSLPHIRSLTMERQQDGIIMDAATRRNLEITQNLAGGSENTL 298 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 +D ++T G R+ + PL ++ I R SI +Q+ L + + +L+ D+ Sbjct: 299 ASVLDKTVTPMGSRMLKRWLHMPLRNTQTITQRQQSIRA-LQD--LSDNLPPLLRQVGDL 355 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R L+RL + P+D+A +R + + +L+ L N L+ ++ + + L + Sbjct: 356 ERILARLALRTARPRDLARMRHAFQQ-LPLLDSELVNSDNAHLQTLRSQMGEFSE-LREL 413 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L + + P RDGG + G + LDE R+L D + + L+++ E+ + LK+ Sbjct: 414 LERAIIETPPVLVRDGGVIAPGYNQELDEWRALADGATDYLDRLEIREREKLGLDTLKVG 473 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N GY+I+V+ + ++ ++ RQT+ N R+ EL + E+++ + A Sbjct: 474 FNGVHGYYIQVSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSKGKA 527 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L +E ++ L + ++ E+L +++ +A +D+ LA A NY P + ++ + Sbjct: 528 LSLEKNLYDQLFDMLLPHLEALQDSASALAELDVLSNLAERALTLNYHCPTLSDTPGIKL 587 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 GRHP+VE+ LK+ PFIAN LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 588 TGGRHPVVEQVLKE----PFIANPLSLSPQR-----RMLVVTGPNMGGKSTYMRQAALIT 638 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 +MA MGS+VPA A IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V+ Sbjct: 639 LMAYMGSFVPADEATIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVL 698 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 699 MDEIGRGTSTYDGLSLAWACAESLANRIKAMTLFATHYFELTTLPEQIEGVANVHLDAVE 758 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 + I F+H V G A SYG+ V LAG+P V+ RA LK E L Sbjct: 759 HGDTIAFMHSVQEGAASKSYGLAVAALAGVPKDVVKRARQKLKELEALSGSAAS------ 812 Query: 855 PEIQTKESKNNLS---KNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 TK + L + VE ++ L+ D +SP AL+ +Y +K+ Sbjct: 813 ----TKADGSQLPLLVEETSPAVEALEALDPDSLSPRQALEWIYRLKS 856 >gi|329943170|ref|ZP_08291944.1| DNA mismatch repair protein MutS [Chlamydophila psittaci Cal10] gi|332287751|ref|YP_004422652.1| DNA mismatch repair protein [Chlamydophila psittaci 6BC] gi|313848322|emb|CBY17325.1| putative DNA mismatch repair protein [Chlamydophila psittaci RD1] gi|325506805|gb|ADZ18443.1| DNA mismatch repair protein [Chlamydophila psittaci 6BC] gi|328814717|gb|EGF84707.1| DNA mismatch repair protein MutS [Chlamydophila psittaci Cal10] gi|328915006|gb|AEB55839.1| DNA mismatch repair protein MutS [Chlamydophila psittaci 6BC] Length = 826 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 297/830 (35%), Positives = 473/830 (56%), Gaps = 38/830 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K +TPMM+Q+ + K +SL+ +RMGDFYE F+DDA++ S+ L ITLT+R + IP Sbjct: 4 KKTTPMMKQWHQCKEKAGESLLLFRMGDFYEAFYDDAIVLSQNLDITLTQR-----QGIP 58 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M G+PV T N YI +L+ G +IA+ EQ++ + K G + R + R +TPGTL Sbjct: 59 MSGIPVSTINGYIDRLVSKGFKIAVAEQLDEAQDNK--GKSEPLSRELQRFITPGTLLSS 116 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSE 201 LL +NY++++ R+ + +A +D STG F + N L+ +I R+ P EI+ + Sbjct: 117 SLLPEKANNYIVSINRVGALFGLACLDFSTGSFLLQEYDNMKDLVDEICRLAPTEILSCD 176 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVF----FDHSISESRIADYYNITTVDTFGSFSQVEK 257 K + ++ + E + + + F+H + +++ ++N++++D FG V Sbjct: 177 K--FYKKHSDIIEQIQQHLKLTLSTYADWAFEHQFATQKLSLHFNVSSLDGFGLKGLVPA 234 Query: 258 -TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR-EQSLL 315 +A A +SY++ ++ I P+ + Q L ID+A++ NLE+L + + + SLL Sbjct: 235 INSAGALLSYLQDKLLLPVEHISIPKTQGNQKHLLIDTASQVNLELLTPIHDPQGKSSLL 294 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 ++ + T GGRL + +P D +I R D++ F + L ++ L D+ Sbjct: 295 HVMERTCTPMGGRLLRNTLVNPFYDQQEILLRQDAVEFLLDRSELRKNLRSFLSQVRDLE 354 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP---QSLE 432 R +++ PKDI ++RD + + + + L LP+ +G LP SL Sbjct: 355 RLTTKITTSLAGPKDIGMLRDSLNASMRVCELLSPLPLPKFFQGKF----TLPIGLTSLL 410 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 + LS+ L +LP +G D L R ++ SK + Q ++T +K LK Sbjct: 411 ELLSNALLGELPLRTSEGNIFCDNHHPDLQRLRYTKENSKEWLWQYQETIRKQTGVKKLK 470 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 + ++ LGY+IEV+S A +L K+ FI RQ+ + RFTT +L + ++ + N ++ Sbjct: 471 VCYSQVLGYYIEVSSDFAPLLPKE------FIRRQSRLHAERFTTEKLQEFQDDMLNISD 524 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 +E + F+ L I++Q E++ SQVIA ID ++L+ LA E NYCRPI+D S + Sbjct: 525 KLQTLETQLFKDLCEQILQQREAILFLSQVIADIDYILSLSDLAAEYNYCRPIVDTSDSL 584 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 + G HP+ + L + + FI ND + ++ L+TGPNM GKST++RQ AL Sbjct: 585 SISGGIHPVAQTLLDKGT---FIPNDIKMH----NTRTRMILITGPNMAGKSTYIRQIAL 637 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 +VIMAQMGS++PA AHIG++DK+F+R+G+ DNL+ G STFMVEM ETA+IL+ AT++S Sbjct: 638 LVIMAQMGSFIPAKSAHIGMIDKIFTRIGAGDNLSKGMSTFMVEMAETANILHNATDRSL 697 Query: 733 VILDEIGRGTATLDGLSIAWATIEYL--HETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 VILDE+GRGT+T DGL+IA + +EYL E + + L ATH+ ELTDL N Sbjct: 698 VILDEVGRGTSTYDGLAIAQSVVEYLLFTEGKKAKTLFATHYKELTDLENHCPHVENFHA 757 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 V ++ +FL++++ G + S+GI V KLAG P VISRA IL+ E Sbjct: 758 GVKETGGQPVFLYEILKGHSQKSFGIHVAKLAGFPLCVISRAQQILRQLE 807 >gi|226224004|ref|YP_002758111.1| DNA mismatch repair (recognition) [Listeria monocytogenes Clip81459] gi|259511171|sp|C1L2V9|MUTS_LISMC RecName: Full=DNA mismatch repair protein mutS gi|225876466|emb|CAS05175.1| DNA mismatch repair (recognition) [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 860 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 312/894 (34%), Positives = 499/894 (55%), Gaps = 61/894 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+EIK D+ +F+R+GDFYE+FF+DAL AS+ L ITLT R + IPMCG Sbjct: 5 TPMIKQYLEIKDKYQDAFLFFRLGDFYEMFFEDALNASQILEITLTGREGGTKEKIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A+ YI LI+ G+++AICEQ+E P + K +V+R VV+L++PGT+ +++ L Sbjct: 65 VPYHSASGYIDTLIEKGYKVAICEQVEDP-----KTTKGMVKREVVQLISPGTVMDERGL 119 Query: 146 SPTDSNYLMAVARIR-TEWAIAWIDISTGIFK--ISTSNHDRLISDIMRIDPREIIFSEK 202 ++NY+ ++ E+ A+ D+STG K + ++ DRLI+++ + RE+I S Sbjct: 120 KAKENNYIASLYCYEGKEYGFAYSDLSTGELKSTVIEASEDRLINELTTLSTRELIVSSS 179 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 E E L +V Q + F S+ E N V S S EK A Sbjct: 180 EK---------EVLSDVMKEQLGLTF--SVHEEDTIPVENEKLVTRHMSLS--EKRAIGK 226 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDYS 321 + Y+K+TQ + + + + + +D ++ NLE+ ++ G R+ +LL +D + Sbjct: 227 LLHYLKETQKRDLGHLQQAVHYETSNYMKMDYYSKRNLELAESIRGKGRQGTLLWLLDNT 286 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSI-----NFFIQNPILINPIQKILKSSPDVPR 376 T GGR+ + I PL D KI R + + +FF + ++ N LK+ D+ R Sbjct: 287 QTAMGGRMLKQWIDRPLIDRKKIIDRQNDVSELMAHFFERLELVEN-----LKNVYDLER 341 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R+ G +D+ +R+ + I L + ++ EL ++ ++L + LE+ Sbjct: 342 LAGRVAYGNVNARDLIQLRNSLYQIPRIRATLLSMSSESLTELANQLDPCEELTEKLEEA 401 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + D P R+GG ++DG ++ LD R K IA L+ K E T IK +K+ Sbjct: 402 IM----DSAPISIREGGIIKDGYNSQLDTYRDASRNGKTWIAELERKERELTGIKTMKVG 457 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N GY+IEVT ++ +L + R+ +QT++N R+ T EL + E I +A + Sbjct: 458 FNRVFGYYIEVTRANTHLL-----PEGRYERKQTLTNAERYITPELKEKEKLILDAEEKS 512 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E + F + + + E L ++ ++ ID + A ++++ ++ RP + + V Sbjct: 513 MELEYQLFSEVREMVKDYIERLQKLAKSVSEIDCLQSFADISEKNHFIRPTLSEDGSLHV 572 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 K GRHP+VEK + QS ++ANDC L D+N ++ L+TGPNM GKST++RQ AL Sbjct: 573 KQGRHPVVEKVMGAQS---YVANDCVL----DENR-EILLITGPNMSGKSTYMRQVALTA 624 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 I AQ+G +VPA A + I D++F+R+G+AD+L +G+STFMVEM+E + + AT S ++ Sbjct: 625 ICAQVGCFVPAEEAILPIFDQIFTRIGAADDLIAGQSTFMVEMLEARNAIVHATKDSLIL 684 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 DEIGRGTAT DG+++A A IEY+HE + L +TH+HELTDL K L N + + Sbjct: 685 FDEIGRGTATYDGMALAQAIIEYIHENVHAKTLFSTHYHELTDLEKELSGLQNIHVSAVE 744 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE----KLYHHNQKDM 850 N ++FLHK+ G AD SYGI V +LA LP ++I RA IL+ E K+ + K Sbjct: 745 ENGKVVFLHKIKEGPADKSYGIHVAELAELPKSLIERASRILEQLENDDKKIIIASVKQP 804 Query: 851 RLYYPEIQ-----TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + E+Q + K SK KL E I +N+ +M+P+ A+ LY +++ Sbjct: 805 EEVHEEVQLSMFPVEPEKKASSKETKLLKE-IASMNIMQMTPMDAMNKLYELQS 857 >gi|283479513|emb|CAY75429.1| DNA mismatch repair protein mutS [Erwinia pyrifoliae DSM 12163] Length = 876 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 308/888 (34%), Positives = 487/888 (54%), Gaps = 49/888 (5%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 ++ S TPMM+QY+ +K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G Sbjct: 29 DKEFSSHTPMMQQYLRLKAEHPEILLFYRMGDFYELFYDDAKRASQLLEISLTKRGASAG 88 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM GVP H +Y+ KL+++G +AICEQI P +K V R VVR+VTPGT Sbjct: 89 EPIPMAGVPYHAVENYLSKLVQLGESVAICEQIGDPAL-----SKGPVERKVVRIVTPGT 143 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL+ N L A+ + A +DIS+G F+++ ++ + + +++ R +P E+ Sbjct: 144 ISDEALLNERQDNLLAAIWHSPRGFGYATLDISSGRFRLAEPTDLETMAAELQRTNPAEL 203 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVE 256 ++ E + A L E N + +++ + +R T D G Q Sbjct: 204 LYPEDFAAMA----LIE---NRRGLRRRPLWEYELDTARQQLNLQFATRDLSGFGVEQAH 256 Query: 257 KT--AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSL 314 AA + Y+K TQ + P I E Q + +D+A R NLEI + L+G E +L Sbjct: 257 HALRAAGCLLQYVKDTQRTSLPHIRSLTMERQQDGIIMDAATRRNLEITQNLAGGSENTL 316 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 +D ++T G R+ + PL ++ I R SI +Q+ L + + +L+ D+ Sbjct: 317 ASVLDKTVTPMGSRMLKRWLHMPLRNTQTITQRQQSIRA-LQD--LSDNLPPLLRQVGDL 373 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R L+RL + P+D+A +R + + +L+ L N L+ ++ + + L + Sbjct: 374 ERILARLALRTARPRDLARMRHAFQQ-LPLLDSELVNSDNAHLQTLRSQMGEFSE-LREL 431 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L + + P RDGG + G + LDE R+L D + + L+++ E+ + LK+ Sbjct: 432 LERAIIETPPVLVRDGGVIAPGYNQELDEWRALADGATDYLDRLEIREREKLGLDTLKVG 491 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N GY+I+V+ + ++ ++ RQT+ N R+ EL + E+++ + A Sbjct: 492 FNGVHGYYIQVSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSKGKA 545 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L +E ++ L + ++ E+L +++ +A +D+ LA A NY P + ++ + Sbjct: 546 LALEKNLYDQLFDMLLPHLEALQDSASALAELDVLSNLAERALTLNYHCPTLSDTPGIKL 605 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 GRHP+VE+ LK+ PFIAN LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 606 TGGRHPVVEQVLKE----PFIANPLSLSPQR-----RMLVVTGPNMGGKSTYMRQAALIT 656 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 +MA +GS+VPA A IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V+ Sbjct: 657 LMAYIGSFVPADQATIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVL 716 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 717 MDEIGRGTSTYDGLSLAWACAESLANRIKAMTLFATHYFELTTLPEQIEGVANVHLDAVE 776 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 + I F+H V G A SYG+ V LAG+P V+ RA LK E L Sbjct: 777 HGDTIAFMHSVQEGAASKSYGLAVAALAGVPKDVVKRARQKLKELEALSGSAAS------ 830 Query: 855 PEIQTKESKNNLS---KNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 TK + L + VE ++ L+ D +SP AL+ +Y +K+ Sbjct: 831 ----TKADGSQLPLLVEETSPAVEALEALDPDSLSPRQALEWIYRLKS 874 >gi|218690858|ref|YP_002399070.1| DNA mismatch repair protein MutS [Escherichia coli ED1a] gi|254766628|sp|B7MYN6|MUTS_ECO81 RecName: Full=DNA mismatch repair protein mutS gi|218428422|emb|CAR09202.1| methyl-directed mismatch repair protein [Escherichia coli ED1a] Length = 853 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 312/889 (35%), Positives = 490/889 (55%), Gaps = 51/889 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + +++++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMVAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R L+RL + P+D+A +R + + L L+N ++ EK+ + + L Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ-LPELRAQLENVDSAPVQALREKMGEFAE-LRD 405 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + D P RDGG + G + LDE R+L D + + L+++ E T + LK+ Sbjct: 406 LLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERERTGLDTLKV 465 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + Sbjct: 466 GFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKEYEDKVLTSKGK 519 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY P + Sbjct: 520 ALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFIDKPGIR 579 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 580 ITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTALI 630 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V Sbjct: 631 ALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLV 690 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L Sbjct: 691 LMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH---NQKDM 850 + + I F+H V G A SYG+ V LAG+P VI RA L+ E + + Q D Sbjct: 751 EHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESISPNAAATQVD- 809 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 810 -------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|104774422|ref|YP_619402.1| DNA mismatch repair protein MutS [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|122983907|sp|Q1G938|MUTS_LACDA RecName: Full=DNA mismatch repair protein mutS gi|103423503|emb|CAI98405.1| DNA mismatch repair protein MutS [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 856 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 300/879 (34%), Positives = 492/879 (55%), Gaps = 47/879 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K++TPMM QY +IK PD+ +FYR+GDFYEL+ DDA+ S+ L +TLT R IP Sbjct: 4 KATTPMMEQYYQIKDQYPDAFLFYRVGDFYELYEDDAIKGSQILELTLTHRSNKSENPIP 63 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP + Y+ L++ G+++AICEQ+E P +AK +V+R +++LVTPGT Sbjct: 64 MAGVPHMAVDSYVNTLVEKGYKVAICEQLEDPKKAK-----GMVKRGIIQLVTPGTKMAQ 118 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSE 201 +SNYL +V + +A+ D+STG IF ++ ++++++ + RE++F+ Sbjct: 119 GPDDSQESNYLTSVVEKAGGYGLAYSDLSTGEIFVTHVKHYAEVVNELLSLRTREVVFA- 177 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 LS ++ L + N+ V++P E Y D+ +EK A Sbjct: 178 GNLSASDRDRLQK--ANITVSEPAELE----GEHAEISYVQQKLTDS------MEKAAVR 225 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDY 320 + Y+ TQ + + E +I L + + + NLE+ ++ + R+Q SL +D Sbjct: 226 QLVVYLLATQKRSLAHLQVAESFEIGQYLQMANTVQRNLELTQSATTGRKQGSLFWVLDK 285 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGRL + ++ PL +I R + + + I LK D+ R R Sbjct: 286 TTTAMGGRLLKQWLSRPLLSLDRIKQRQQMVQALLDDYFTRENIVDSLKGVYDLERLSGR 345 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL--PQS-LEKTLSS 437 + G P+++ + + + I+ +++ P+ +EK + PQS L +++++ Sbjct: 346 VAFGNVNPRELLQLAKSLEATKLIIQTLVESGNPD-----LEKYGQGIDPQSELAESITN 400 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 L D P +DGG +R G LD+ R + K+ +A ++++ + T I NLKI +N Sbjct: 401 CLVDQPPISAKDGGIIRAGVSEDLDKYREAMNGGKKWLAQMEMEERQRTGIDNLKIGYNR 460 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GYFI+V+ + + + +DR+ +QT++N R+ T EL + EN I A + + + Sbjct: 461 VFGYFIQVSKGNVAKV-----PQDRYTRKQTLTNADRYITPELKEHENLILEAESRSTDL 515 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E E F L A+ L + +A +D+ +A A A+E+NYCRP + VK+G Sbjct: 516 EYELFSQLREAVKAHIPDLQELGRQLAALDVFVAFAQDAEEKNYCRPSFSSKNEIAVKNG 575 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+V L S +I ND + D+++ ++L+TGPNM GKST++RQ ALI IMA Sbjct: 576 RHPVVGAVLPAGS---YIPNDLVM----DEDT-SIYLITGPNMSGKSTYMRQLALIAIMA 627 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+GS+VPA A + + D++F+R+G+AD+L SG+STFMVEM E L A+++S V+ DE Sbjct: 628 QIGSFVPADSAKLPVFDQVFTRIGAADDLYSGKSTFMVEMSEANEALQHASSRSLVLFDE 687 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGTAT DG+++A A I+YLH+ + L ATH+HELT+L ++L N + ++ N Sbjct: 688 IGRGTATYDGMALAGAIIKYLHDKVGAKTLFATHYHELTELDETLLHLKNIHVGATEENG 747 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE----KLYHHNQKDMRLY 853 +IFLHK++PG AD SYGI V KLAGLP V+ A +LK E + + +++ + L+ Sbjct: 748 KLIFLHKILPGPADQSYGIHVAKLAGLPRVVLREASSMLKRLEAEGAREINPSRQQLDLF 807 Query: 854 YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALK 892 P ++ E +N L + +++I +NL+E +PL ++ Sbjct: 808 SP-VEVVE-ENPLKAEQEELLDEISQVNLNEKTPLEVMQ 844 >gi|223939292|ref|ZP_03631172.1| DNA mismatch repair protein MutS [bacterium Ellin514] gi|223892005|gb|EEF58486.1| DNA mismatch repair protein MutS [bacterium Ellin514] Length = 876 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 300/873 (34%), Positives = 495/873 (56%), Gaps = 63/873 (7%) Query: 23 KSSTPMMRQYIEIKSINP-DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 K TPMM QY IK P D+++ +R+GDFYE+FF+DA +A+ L + LTKRG + Sbjct: 30 KQLTPMMAQYRRIKGELPKDAILLFRLGDFYEMFFEDAQVAAPLLNVALTKRGV-----V 84 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCG+P H AN+YI +L+K G ++AICEQ+E EA+ LV+R+V ++++PGT + Sbjct: 85 PMCGIPFHAANNYISRLLKAGRKVAICEQLE---EARP---GQLVKRDVTQILSPGTHFD 138 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIF- 199 +++L+ +N+L AV + + +A +D++TG FK + L++++ R+ P EII Sbjct: 139 ERMLAAEKNNFLAAVYGVGKSFGLALVDLTTGSFKCTELETEAALLAELERLRPAEIILP 198 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 SE H S F L + F + + D++ + ++D FG ++ T Sbjct: 199 SEAARLHELLNSNFPILNGYE----DWVFAPETALFTVRDHFKVASLDGFGLKNKGAATG 254 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQST--LFIDSAARSNLEILRTL--SGSREQSLL 315 AA A+ + TQ + + Q++ L +D +LEIL L ++ +L Sbjct: 255 AAGAVLHYL-TQHLRRDVGHLTSLSCYQASDYLTLDIITLRHLEILEPLHRDAAKNATLY 313 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 ++ ++T G R + ++ PL D+ I R +++ +++N + + L D+ Sbjct: 314 GALNRTVTPMGARRLRDWLSQPLADAKAIGCRQNAVQTWMENVSALEQFRAQLTQVRDLE 373 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIR----------------SGINILNLFLKNDLPEELRG 419 R+L RL G G +D+A +R + +G +L + P L Sbjct: 374 RTLGRLSAGTGNARDLAALRLALEQVPMLRSILAGLPTSGAGNGLLQEAEEISEPSLLGE 433 Query: 420 AVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQ 479 ++ +LP +++ ++ ++D+ P ++GG +RDG D +LDE R+ K IA LQ Sbjct: 434 LGSQVVELPDLIDQ-IARAIADEPPLALKEGGLIRDGFDPALDELRAASRSGKDWIAKLQ 492 Query: 480 LKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLE 539 E T I +LK++ N+ GY+IEVT+S+ S + + +I +QT++N RF T E Sbjct: 493 QDEIERTGISSLKVRFNSVFGYYIEVTASNLSKVPQ------HYIRKQTIANGERFITPE 546 Query: 540 LIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQ 599 L ++E +I A ++ +E E F + ++ + + + +A +D+ + A A+ Sbjct: 547 LKEMEGKILGAEERSIKLEYELFLRVREVMLARLPEIQQTASALAQLDVLGSFAETARLY 606 Query: 600 NYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPN 659 +YCRP + ++DGRHP++E+ L ++ F++ND L ++ L+TGPN Sbjct: 607 SYCRPQVGTENVVNIRDGRHPVLEQNLSEER---FVSNDTQLD-----QQVQVALITGPN 658 Query: 660 MGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIE 719 M GKST++RQ AL+V++A GS++PA+ A + +VD++F+R+G++D+LA G+STFMVEM E Sbjct: 659 MAGKSTYIRQVALLVLLAHTGSFIPAAEARVDLVDRIFTRIGASDDLARGQSTFMVEMSE 718 Query: 720 TASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLS 779 TA+ILN AT +S +ILDEIGRGT+T DGLS+AW+ +E+LH + L ATH+HELT+L+ Sbjct: 719 TANILNNATAKSLIILDEIGRGTSTFDGLSLAWSIVEHLHNQVGAKTLFATHYHELTELA 778 Query: 780 KSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF 839 L R N + V + N+ I+FL K+I G D SYGIQV +LAG+P VI RA +IL Sbjct: 779 GRLPRIKNYNVAVREWNDQIVFLRKIIEGGTDKSYGIQVARLAGVPKAVIERAKEIL--- 835 Query: 840 EKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKL 872 HN ++ L PE ++ + ++ DKL Sbjct: 836 -----HNLEESEL-TPEGNVRQQARHRAERDKL 862 >gi|261342180|ref|ZP_05970038.1| DNA mismatch repair protein MutS [Enterobacter cancerogenus ATCC 35316] gi|288315513|gb|EFC54451.1| DNA mismatch repair protein MutS [Enterobacter cancerogenus ATCC 35316] Length = 853 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 309/902 (34%), Positives = 484/902 (53%), Gaps = 79/902 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +N + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 DNFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPHHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAALWQDGKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAE-TSLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLIG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y+K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYVKDTQRTALPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGVENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q +L+ D Sbjct: 291 LASVLDNTVTPMGSRMLKRWLHMPIRDTHTLVCRQQTIAALQDR---YTELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP-QSLE 432 + R L+RL + P+D+A +R + LPE LR + + P Q L Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLSDIDSAPVQKLR 394 Query: 433 KTLSSM----------LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 +T+ + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 ETMGEFTELRELLERAIIDAPPVLVRDGGVIAPGYNEELDEWRALADGATDYLDKLEIRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E + LK+ +N GYFI+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERLGLDTLKVGYNAVHGYFIQISRGQSHL------APIHYVRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + ++ L + ++ L ++ +A +D+ + LA A+ NY Sbjct: 509 YEDKVLTSKGKALALEKQLYDELFDMLMPHLGDLQLSAGALAELDVLVNLAERAETLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFIDKPGIRITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI ++A +GSYVPA + IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQTALIALLAYIGSYVPAQHVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DE+GRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATEHSLVLMDEVGRGTSTYDGLSLAWACAESLANKIKAMTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E L Sbjct: 740 EGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESL 799 Query: 843 YHH------NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYA 896 + + M L P +T + VE ++ L+ D ++P AL+ +Y Sbjct: 800 SPNAAATQIDGTQMSLLVPAEETSPA-----------VEALENLDPDSLTPRQALEWIYR 848 Query: 897 VK 898 +K Sbjct: 849 LK 850 >gi|259909439|ref|YP_002649795.1| DNA mismatch repair protein MutS [Erwinia pyrifoliae Ep1/96] gi|224965061|emb|CAX56593.1| DNA mismatch repair protein [Erwinia pyrifoliae Ep1/96] Length = 858 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 308/888 (34%), Positives = 487/888 (54%), Gaps = 49/888 (5%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 ++ S TPMM+QY+ +K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G Sbjct: 11 DKEFSSHTPMMQQYLRLKAEHPEILLFYRMGDFYELFYDDAKRASQLLEISLTKRGASAG 70 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM GVP H +Y+ KL+++G +AICEQI P +K V R VVR+VTPGT Sbjct: 71 EPIPMAGVPYHAVENYLSKLVQLGESVAICEQIGDPAL-----SKGPVERKVVRIVTPGT 125 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL+ N L A+ + A +DIS+G F+++ ++ + + +++ R +P E+ Sbjct: 126 ISDEALLNERQDNLLAAIWHSPRGFGYATLDISSGRFRLAEPTDLETMAAELQRTNPAEL 185 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVE 256 ++ E + A L E N + +++ + +R T D G Q Sbjct: 186 LYPEDFAAMA----LIE---NRRGLRRRPLWEYELDTARQQLNLQFATRDLSGFGVEQAH 238 Query: 257 KT--AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSL 314 AA + Y+K TQ + P I E Q + +D+A R NLEI + L+G E +L Sbjct: 239 HALRAAGCLLQYVKDTQRTSLPHIRSLTMERQQDGIIMDAATRRNLEITQNLAGGSENTL 298 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 +D ++T G R+ + PL ++ I R SI +Q+ L + + +L+ D+ Sbjct: 299 ASVLDKTVTPMGSRMLKRWLHMPLRNTQTITQRQQSIRA-LQD--LSDNLPPLLRQVGDL 355 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R L+RL + P+D+A +R + + +L+ L N L+ ++ + + L + Sbjct: 356 ERILARLALRTARPRDLARMRHAFQQ-LPLLDSELVNSDNAHLQTLRSQMGEFSE-LREL 413 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L + + P RDGG + G + LDE R+L D + + L+++ E+ + LK+ Sbjct: 414 LERAIIETPPVLVRDGGVIAPGYNQELDEWRALADGATDYLDRLEIREREKLGLDTLKVG 473 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N GY+I+V+ + ++ ++ RQT+ N R+ EL + E+++ + A Sbjct: 474 FNGVHGYYIQVSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSKGKA 527 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L +E ++ L + ++ E+L +++ +A +D+ LA A NY P + ++ + Sbjct: 528 LALEKNLYDQLFDMLLPHLEALQDSASALAELDVLSNLAERALTLNYHCPTLSDTPGIKL 587 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 GRHP+VE+ LK+ PFIAN LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 588 TGGRHPVVEQVLKE----PFIANPLSLSPQR-----RMLVVTGPNMGGKSTYMRQAALIT 638 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 +MA +GS+VPA A IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V+ Sbjct: 639 LMAYIGSFVPADQATIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVL 698 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 699 MDEIGRGTSTYDGLSLAWACAESLANRIKAMTLFATHYFELTTLPEQIEGVANVHLDAVE 758 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 + I F+H V G A SYG+ V LAG+P V+ RA LK E L Sbjct: 759 HGDTIAFMHSVQEGAASKSYGLAVAALAGVPKDVVKRARQKLKELEALSGSAAS------ 812 Query: 855 PEIQTKESKNNLS---KNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 TK + L + VE ++ L+ D +SP AL+ +Y +K+ Sbjct: 813 ----TKADGSQLPLLVEETSPAVEALEALDPDSLSPRQALEWIYRLKS 856 >gi|78485935|ref|YP_391860.1| DNA mismatch repair protein MutS [Thiomicrospira crunogena XCL-2] gi|123555225|sp|Q31F87|MUTS_THICR RecName: Full=DNA mismatch repair protein mutS gi|78364221|gb|ABB42186.1| DNA mismatch repair protein MutS [Thiomicrospira crunogena XCL-2] Length = 871 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 305/886 (34%), Positives = 485/886 (54%), Gaps = 45/886 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ +K+ P+ L+FYRMGDFYELF++DA+ AS L ITLT RGK G IPM G Sbjct: 8 TPMMQQYLAVKADYPNQLLFYRMGDFYELFYEDAVKASELLEITLTARGKSGGNPIPMAG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H+A Y+ KL+K+G +AICEQI P +K V R VVR++TPGTL ED LL Sbjct: 68 IPHHSAEGYLAKLVKLGQSVAICEQIGDP-----SISKGPVERKVVRVITPGTLVEDALL 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204 N L A+ + E+ +A +D+++G F+ + + +L +++ R+ P EII + L Sbjct: 123 EDKSENLLAAIFQQADEYGLATLDVASGRFEATLLPDSTQLSAEVERLKPAEIILPDDPL 182 Query: 205 SHAEYKSLFETLGNVA--VAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 ++L E++ N V P+ F+ R+ D++ + FG +AA Sbjct: 183 FK---QNLPESIQNRPGLVDYPSWHFEKDSCRKRLIDHFGTQDLVAFGCDQLPAVISAAG 239 Query: 263 AISYIKKTQMVNKPTIGYP---EREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 I + ++ + N T+ + + L +D+ +R NLE+ L+G + +L +D Sbjct: 240 VILHYAQSMLQN--TLAHVFSLQTYQADDALALDAMSRRNLELDTNLTGGKNHTLFAILD 297 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL + PL + IN R ++I I+ + LK D+ R LS Sbjct: 298 NATTAMGSRLMNRWLNQPLRNRDIINDRFNAIEDIIEQHSQ-EEFRSALKPIGDLERILS 356 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ + P+DI + + + L LK + + ++L P+ L L + L Sbjct: 357 RVSLYSARPRDILHLGRSLNQ-LPELQALLKQQTANKWQQLSKQLGLYPE-LASQLETAL 414 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + P RDGG +G D+ LDE R+L++Q+ + +L+ + E T I LK+ +N Sbjct: 415 VESPPMLMRDGGVFAEGYDSELDELRNLKNQAGDYLLALEAREKERTGITTLKVGYNRVH 474 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IEV+ + + D ++ RQT+ R+ T EL + E+++ +A AL E Sbjct: 475 GYYIEVSKLQSDNVPAD------YVRRQTLKAQERYITPELKEFEDKVLSANEKALAREK 528 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 ++ L + + ++L + +A D+ ++LA A N RP + + +K GRH Sbjct: 529 WLYQQLLERLNQDLQALQRTAAALAETDVLVSLARQAINLNLTRPTLSSEPGIDIKQGRH 588 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 VE S++PFI ND +C +++ +L ++TGPNMGGKSTF+RQ ALI IMA M Sbjct: 589 LTVEAL----SNQPFIPND---TCFDEQR--RLQIITGPNMGGKSTFMRQTALIAIMAYM 639 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPA A +G +D++F+R+G++D+L SGRSTFMVEM ETA+IL+ A+ +S +++DE+G Sbjct: 640 GSFVPAESATLGPIDRIFTRIGASDDLTSGRSTFMVEMTETANILHHASPESLILMDEVG 699 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGT+T DGL++AWA E + ++ + L ATH+ ELT L + N L + + I Sbjct: 700 RGTSTFDGLALAWAIAEQMAQSIQGYCLFATHYFELTTLVEQFNNTVNIHLSAIEHQDKI 759 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 +F+H+V G A SYG+QV LAG+P VI +A K +L + + Sbjct: 760 VFMHQVEEGPASQSYGLQVAALAGVPTAVIDKAK---KHLHRLENQTAAQQQTSGTASSA 816 Query: 860 KES--------KNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAV 897 KES + L + + + +K L++D+++P AL+ LY V Sbjct: 817 KESVQQFDLFAQPALPEAIETMLTDLKALSVDDLTPRQALEKLYEV 862 >gi|153868911|ref|ZP_01998639.1| MutS 1 protein [Beggiatoa sp. PS] gi|152074519|gb|EDN71365.1| MutS 1 protein [Beggiatoa sp. PS] Length = 854 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 308/882 (34%), Positives = 478/882 (54%), Gaps = 40/882 (4%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKH-LGK 79 N TP M+QY+ IK PD L+FYRMGDFYELFF+DA A+R L ITLT R K G+ Sbjct: 8 NAPEHTPAMQQYLHIKVEYPDMLLFYRMGDFYELFFEDAERAARLLDITLTSRSKSGTGQ 67 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+++G ICEQI P +K LV R V R++TPGTL Sbjct: 68 TIPMAGIPYHAIENYLAKLVRLGESAVICEQIGDPALSK-----GLVERKVTRIITPGTL 122 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFK-ISTSNHDRLISDIMRIDPREII 198 T++ LL + L AV I IA +D+++G F I L S++ R+ P E++ Sbjct: 123 TDEALLEERQESLLAAVHTIEDLIGIATLDLASGRFALIEVQGQALLHSEMERLRPAELL 182 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS-FSQVEK 257 SE SL + QP +F+ ++ + + + FG + Sbjct: 183 ISEDSPLQFPKMSLRQ--------QPAWYFELDTAKRLLTQQFGTKDLSGFGCEHLTLGL 234 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA + Y ++TQ P I E E + ++F+D+A+R NLE+ + G RE +L+ Sbjct: 235 RAAGCLLQYAQETQRTQLPHIQSLEWERREESIFMDAASRRNLELDSRIIGQREHTLINI 294 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D T GGRL + PL D + R SI+ +Q ++ + + L++ D+ R Sbjct: 295 LDECATPMGGRLLRRWLHRPLRDIEILRARHHSISELLQQQS-VDILYQQLRAIGDIERI 353 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 L+R+ + P+D++ +R + S + L L+ L +++ P+ L L Sbjct: 354 LTRVALKSARPRDLSQLRTAL-STLPELQKHLQPFNSNHLTHLAQQIGAFPE-LSTLLIR 411 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + + P RDGG + G D LDE R L++ + + + +L+ + E T I NLK+ +N Sbjct: 412 AIIEKPPMLVRDGGVIAPGYDQELDELRGLKENAGQYLVNLESRERERTGIANLKVGYNR 471 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IE++ + + + D + RQT+ R+ T EL E+++ +A AL Sbjct: 472 IHGYYIEISRTQVNKIPPD------YTRRQTLKAAERYITQELKHFEDKVLSANERALKR 525 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E +++L + ++E L +S +A +D+ A A + P + + +G Sbjct: 526 EKYLYDLLLDKVLESLTELQASSAALAELDVLNNFAERADTLKFYPPEFTDKECIEILEG 585 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RH +VE +PFI ND L+ + ++ +LT PNMGGKST++RQ ALIV++A Sbjct: 586 RHLVVEAV----QDEPFIPNDLKLN-----HQRRMLILTSPNMGGKSTYMRQTALIVLLA 636 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GS+VPA A IG +D +F+R+G++D+LA GRSTFMVEM ETA+IL+ AT+ S V++DE Sbjct: 637 HIGSFVPAQQAIIGPIDAIFTRIGASDDLAGGRSTFMVEMTETANILHNATHNSLVLMDE 696 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGT+T DGLS+A+A EYL +T + L ATH+ ELT L + N L+ + N+ Sbjct: 697 IGRGTSTFDGLSLAYACAEYLADTLKAYTLFATHYFELTHLPEQFHNIANVHLEAIEQND 756 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 +IF+H + G A+ SYG+QV LAG+P V++RA LK E+ Q M + E+ Sbjct: 757 KLIFIHTIKDGPANKSYGLQVALLAGVPKKVVNRARIRLKQLEE----QQLKMTAHQTEL 812 Query: 858 QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 S K +EK++ L+ ++M+P AL +Y +KA Sbjct: 813 PLPTSPE--PKGPHPALEKLQSLSPEDMTPRQALDIIYQLKA 852 >gi|170699304|ref|ZP_02890353.1| DNA mismatch repair protein MutS [Burkholderia ambifaria IOP40-10] gi|170135796|gb|EDT04075.1| DNA mismatch repair protein MutS [Burkholderia ambifaria IOP40-10] Length = 885 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 312/902 (34%), Positives = 468/902 (51%), Gaps = 58/902 (6%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E TPMM+QY+ IK+ +PD+LVFYRMGDFYELFF+DA A+R L +TLT+RG G Sbjct: 7 EAFAGHTPMMQQYLRIKADHPDTLVFYRMGDFYELFFEDAEKAARLLDLTLTQRGASAGT 66 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 I M GVP H Y+ KL+K+G +AICEQI P +K V R VVR+VTPGTL Sbjct: 67 PIKMAGVPHHAVEQYLAKLVKMGESVAICEQIGDPAT-----SKGPVERKVVRVVTPGTL 121 Query: 140 TEDQLLSPTDSNYLMAVAR------IRTEWAIAWIDISTGIFKISTSNHDRLISDIMRID 193 T+ LLS + YL+A+ + +AW+++++G +++ D+L + + RI Sbjct: 122 TDAALLSDKNDVYLLAMCTGHNKRGVAVNIGLAWLNLASGALRLAEIEPDQLGAALERIR 181 Query: 194 PREIIFSEKELSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFGSF 252 P EI+ ++ G A+ + P FD + R+ D ++ +D FG+ Sbjct: 182 PAEILTADGATDAVPA-------GAGAIKRVPAWHFDIASGTQRLCDQLDVAGLDGFGAH 234 Query: 253 SQVEKTAAAAAISYIKK-TQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 S AA A+ TQ + + E+ + +D A R NLE+ TL G+ Sbjct: 235 SLTSACGAAGALLLYAAATQGQQLRHVRSLKVENETEYIGLDPATRRNLELTETLRGTES 294 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPI--LINPIQKILK 369 +L +D T G RL + P S +R +I + P ++ ++ L+ Sbjct: 295 PTLYSLLDTCCTTMGSRLLRHWLHHPPRASVAAQSRQQAIGALLDAPANASLDALRSALR 354 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRD------GIRSGINILNLFLKNDLPEELRGAVEK 423 DV R RL + P+D++ +RD +R I+ + D + A+ Sbjct: 355 QIADVERITGRLALLSARPRDLSSLRDTFAALPALRERISAI--VANADALTRVDAALAP 412 Query: 424 LKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 P L+S ++ + RDGG + G DA LDE R + + + + L+ + Sbjct: 413 ----PAECLDLLTSAIAPEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLEARER 468 Query: 484 EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDL 543 T I NL++++N G++IEVT + D + RQT+ N R+ T EL Sbjct: 469 TRTGIANLRVEYNKVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTF 522 Query: 544 ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCR 603 E++ +A AL E ++ + A++ + +A +D+ A A A+ ++ Sbjct: 523 EDKALSAQERALARERALYDGVLQALLPFIPECQRVASALAELDVLAAFAERARTLDWVA 582 Query: 604 PIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 P + ++ GRHP+VE ++Q FIANDC KL L+TGPNMGGK Sbjct: 583 PTFTDEIGIEIEQGRHPVVEAQVEQ-----FIANDCRFGAER-----KLLLITGPNMGGK 632 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 STF+RQ ALI +MA +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+I Sbjct: 633 STFMRQTALIALMAYVGSYVPAKSACFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAI 692 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLK 783 LN AT QS V++DEIGRGT+T DGL++AWA +L N C L ATH+ ELT L Sbjct: 693 LNDATPQSLVLMDEIGRGTSTFDGLALAWAIARHLLAQNGCYTLFATHYFELTQLPAEFP 752 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK-- 841 + N L + GI+FLH V G A+ SYG+QV +LAG+P VI A L E+ Sbjct: 753 QAANVHLSAVEHGHGIVFLHAVNEGPANQSYGLQVAQLAGVPAPVIRAARKHLAYLEQQS 812 Query: 842 -LYHHNQKDMRLYYP----EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYA 896 H Q D+ P E++ ++ +S +EK++ ++ D++ P AL LY Sbjct: 813 ATQHTPQLDLFSAPPAAADELECADAP-AVSAIPHPALEKLRDIDPDDLKPRDALDLLYE 871 Query: 897 VK 898 ++ Sbjct: 872 LR 873 >gi|160887782|ref|ZP_02068785.1| hypothetical protein BACUNI_00185 [Bacteroides uniformis ATCC 8492] gi|156862724|gb|EDO56155.1| hypothetical protein BACUNI_00185 [Bacteroides uniformis ATCC 8492] Length = 871 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 300/886 (33%), Positives = 489/886 (55%), Gaps = 41/886 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+Q++++K+ +PD+++ +R GDFYE + DA++AS LGITLTKR GK I M G Sbjct: 8 TPMMKQFLDLKAKHPDAVMLFRCGDFYETYSTDAVVASEILGITLTKRANGKGKTIEMAG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KLI+ G R+AIC+Q+E P KK LV+R + LVTPG D +L Sbjct: 68 FPHHALDTYLPKLIRAGKRVAICDQLEDPKLTKK-----LVKRGITELVTPGVSINDNVL 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF--SEKE 203 + ++N+L AV + +A++DISTG F + D + + P+E++F ++ Sbjct: 123 NYRENNFLAAVHFGKGACGVAFLDISTGEFLTAEGPFDYVDKLLNNFAPKEVLFERGKRL 182 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + + S F T + F + + ++ ++ + + FG A+ A Sbjct: 183 MFEGNFGSKFFTF-----ELDDWVFTETSAREKLLKHFEVKNLKGFGVEHLKNGIIASGA 237 Query: 264 I-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 I Y+ TQ + R + + +D +LE++ +++ SLL ID +I Sbjct: 238 ILQYLIMTQHTQIGHVTSLARIEEDKYVRLDKFTVRSLELMGSMNDGG-SSLLNVIDKTI 296 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 + G RL + PL D IN RL+ + +F + P I++ L D+ R +S++ Sbjct: 297 SPMGARLLKRWLVFPLKDVQPINERLNVVEYFFRQPDFKELIEEQLHLIGDLERIISKVA 356 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 +GR P+++ ++ +++ I + D L E+L + QS+ + + +D Sbjct: 357 VGRVSPREVVALKVALQAIEPIKAACMDAD-NASLNHIGEQLN-ICQSIRDRIDREIDND 414 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P GG ++ G A LDE R + K + +Q + +E T+I +LKI +NN GY+ Sbjct: 415 PPLLINKGGVIKSGVSAELDELRRIAYSGKDYLLQIQQRESELTEIPSLKIGYNNVFGYY 474 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IEV ++ + + +I +QT++N R+ T EL + E +I A + L++E + + Sbjct: 475 IEVRNTHKDKVPAE------WIRKQTLANAERYITQELKEYEEKILGAEDKILVLETQLY 528 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 L ++ E ++ + IA +D ++ A A+E NY RP+I + + GRHP++ Sbjct: 529 AELVQSLSEFIPAIQINANQIARLDCLLSFATAARENNYIRPVIADDDVLEIHQGRHPVI 588 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 EK L + +IAND L D + ++ ++TGPNM GKS LRQ ALI ++AQ+GS+ Sbjct: 589 EKQLP--IGEKYIANDVML----DSQTQQIIIITGPNMAGKSALLRQTALITLLAQIGSF 642 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA AHIG+VDK+F+RVG++DN++ G STFMVEM E A ILN + +S V+ DE+GRGT Sbjct: 643 VPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNLSPRSLVLFDELGRGT 702 Query: 743 ATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 +T DG+SIAWA +E++HE + R L ATH+HEL ++ KS KR N + V + + +I Sbjct: 703 STYDGISIAWAIVEHIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEIDNKVI 762 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 FL K+ G ++HS+GI V K+AG+P +++ RA DILK E N++ P ++ Sbjct: 763 FLRKLERGGSEHSFGIHVAKMAGMPKSIVKRANDILKQLET---DNRQQGISSKPMVEVG 819 Query: 861 ESKNNLSKNDKLFVEKIKC------LNLD--EMSPLTALKTLYAVK 898 E++ + + + + C LNLD ++PL AL L +K Sbjct: 820 ETRGGMQLSFFQLDDPVLCQIRDEILNLDVNNLTPLEALNKLNDIK 865 >gi|29348530|ref|NP_812033.1| DNA mismatch repair protein MutS [Bacteroides thetaiotaomicron VPI-5482] gi|44888205|sp|Q8A334|MUTS_BACTN RecName: Full=DNA mismatch repair protein mutS gi|29340435|gb|AAO78227.1| DNA mismatch repair protein mutS [Bacteroides thetaiotaomicron VPI-5482] Length = 862 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 305/884 (34%), Positives = 491/884 (55%), Gaps = 41/884 (4%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+Q++++K+ +PD+++ +R GDFYE + DA++AS LGITLTKR GK I M G P Sbjct: 1 MMKQFLDLKAKHPDAVMLFRCGDFYETYSTDAIVASEILGITLTKRANGKGKTIEMAGFP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H + Y+ KLI+ G R+AIC+Q+E P KK LV+R + LVTPG D +L+ Sbjct: 61 HHALDTYLPKLIRAGKRVAICDQLEDPKLTKK-----LVKRGITELVTPGVSINDNVLNY 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF--SEKELS 205 ++N+L AV + +A++DISTG F + D + + P+EI+F ++ + Sbjct: 116 KENNFLAAVHFGKASCGVAFLDISTGEFLTAEGPFDYVDKLLNNFGPKEILFERGKRLMF 175 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI- 264 + S F T + F S + ++ ++ + FG A+ AI Sbjct: 176 EGNFGSKFFTF-----ELDDWVFTESTAREKLLKHFETKNLKGFGVEHLKNGIIASGAIL 230 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 Y+ TQ I R + + +D +LE++ +++ SLL ID +I+ Sbjct: 231 QYLTMTQHTQIGHITSLARIEEDKYVRLDKFTVRSLELIGSMNDG-GSSLLNVIDRTISP 289 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 G RL + PL D IN RL+ + +F + P I++ L D+ R +S++ +G Sbjct: 290 MGARLLKRWMVFPLKDEKPINDRLNVVEYFFRQPDFKELIEEQLHLIGDLERIISKVAVG 349 Query: 385 RGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLP 444 R P+++ ++ +++ I L+ D L E+L L S+ ++ +++D P Sbjct: 350 RVSPREVVQLKVALQAIEPIKQACLEAD-NASLNRIGEQLN-LCISIRDRIAKEINNDPP 407 Query: 445 TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIE 504 GG ++DG + LDE R + K + +Q + +E+T I +LK+ +NN GY+IE Sbjct: 408 LLINKGGVIKDGVNEELDELRRISYSGKDYLLQIQQRESEQTGIPSLKVAYNNVFGYYIE 467 Query: 505 VTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEI 564 V + + KD + +I +QT+ N R+ T EL E +I A + L++E + + Sbjct: 468 VRN-----IHKD-KVPQEWIRKQTLVNAERYITQELKVYEEKILGAEDKILVLETQLYTD 521 Query: 565 LSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEK 624 L A+ E + + IA +D ++ A +A+E NY RP+I+++ ++ GRHP++EK Sbjct: 522 LVQALTEFIPQIQINANQIARLDCLLSFANVARENNYIRPVIEDNDVLDIRQGRHPVIEK 581 Query: 625 TLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684 L + +IAND L D S ++ ++TGPNM GKS LRQ ALI ++AQ+GS+VP Sbjct: 582 QLP--IGEKYIANDVML----DSASQQIIIITGPNMAGKSALLRQTALITLLAQIGSFVP 635 Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744 A AHIG+VDK+F+RVG++DN++ G STFMVEM E A ILN +++S V+ DE+GRGT+T Sbjct: 636 AESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNVSSRSLVLFDELGRGTST 695 Query: 745 LDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFL 802 DG+SIAWA +EY+HE + R L ATH+HEL ++ KS KR N + V + + +IFL Sbjct: 696 YDGISIAWAIVEYIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEVDNKVIFL 755 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKES 862 K+ G ++HS+GI V K+AG+P +++ RA ILK E N++ P + E+ Sbjct: 756 RKLERGGSEHSFGIHVAKMAGMPKSIVKRANTILKQLES---DNRQQGISGKPLTEVSEN 812 Query: 863 KNNLSKNDKLFVEKIKC------LNLD--EMSPLTALKTLYAVK 898 ++ + + + I C LNLD ++P+ AL L +K Sbjct: 813 RSGMQLSFFQLDDPILCQIRDEILNLDVNNLTPIEALNKLNDIK 856 >gi|170765997|ref|ZP_02900808.1| DNA mismatch repair protein MutS [Escherichia albertii TW07627] gi|170125143|gb|EDS94074.1| DNA mismatch repair protein MutS [Escherichia albertii TW07627] Length = 853 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 316/900 (35%), Positives = 488/900 (54%), Gaps = 73/900 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 ENL + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENLDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPHHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGVENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLEGVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFAELRDLLERAIIDTPPVLVRDGGVIATGYNEELDEWRALADGATDYLERLEVRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSANALAELDVLVNLAERAYTLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFIDKPAIRITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT QS V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATEQSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 740 EGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 799 Query: 843 YHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + Q D T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 800 SPNAAATQVD--------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|85859743|ref|YP_461945.1| DNA mismatch repair protein MutS [Syntrophus aciditrophicus SB] gi|123516864|sp|Q2LUL3|MUTS_SYNAS RecName: Full=DNA mismatch repair protein mutS gi|85722834|gb|ABC77777.1| DNA mismatch repair protein [Syntrophus aciditrophicus SB] Length = 880 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 294/828 (35%), Positives = 469/828 (56%), Gaps = 30/828 (3%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + S TP M+QY E+K+++ D +V +RMGDFYE+FF+DA+ AS+ L ITLT R K I Sbjct: 9 ISSLTPAMKQYAEVKALHKDCIVLFRMGDFYEIFFEDAVTASKILDITLTSRNKGKEDSI 68 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 P+CG P H ++ YI KLI+ G ++A+CEQIE P AK +VRR VVR+VTPG + + Sbjct: 69 PLCGFPYHASSTYIPKLIEKGFKVAVCEQIEDPKLAK-----GVVRREVVRIVTPGLVVD 123 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFS 200 L ++N+L AV + +A++DISTG F++S R +++ +D REI+ Sbjct: 124 TANLHAKENNFLAAVFPLEHHIGLAFLDISTGEFRVSDFQDIRFFETELAALDFREIMVP 183 Query: 201 EKELSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKT 258 + K+ + + + P+ +FD + R+ DY ++ G Sbjct: 184 QGSGKQGFLKAFAGRENSCRLDEFPDEYFDRESALGRLQDYIRKEDLEDLGLKDCPAVIG 243 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKT 317 AA A + Y+++TQ I + L +D A+ NLE+ +T+ +R SL Sbjct: 244 AAGAVLRYVEETQKSRLTHINRLQWYSAAEYLVLDETAKRNLELFKTIQDNRTAGSLFSV 303 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D ++T GGR + PL D KI RL ++ +N + ++K+L D+ R Sbjct: 304 LDETVTAMGGRRLRWWLNYPLVDPEKIKARLAAVAEIRENHLFRENLRKVLSEVYDMERL 363 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKND--LPEELRGAVEKLKKLPQSLEKTL 435 R+ +G +D+ ++ +++ + NL ++ + + ++ +++L L +EK + Sbjct: 364 AGRIALGVANGRDLIALKQSLKNLPVLKNLLADSNSFMLDRIQDGIDELPDLYDLIEKAI 423 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 D P R+GG +++G D D + +R IA+L+ K + T I +LK+ Sbjct: 424 C----DSPPVTLREGGIIKEGYDEERDRLFFMTRDGRRWIAALEEKERKRTGISSLKVGF 479 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 NN GY+IE++ +++++ +D ++ +QT+ N R+ EL + E + NA Sbjct: 480 NNVFGYYIEISKANSALAPED------YVRKQTLVNAERYINQELKEYEATVLNAETRCR 533 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 E + F + + + + ++A +D +LA +A++ NYC P++D + Sbjct: 534 EREYDLFMQVRECAAAEITRMQATATLLADLDALASLAEVAEKYNYCCPVVDLEDRIEID 593 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ + F+ ND L D + + ++TGPNM GKST++RQ ALIV+ Sbjct: 594 VGRHPVVERMSLRDG---FVPNDVVL----DTDENRFLVITGPNMAGKSTYIRQVALIVL 646 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQMGS+VP+S A IG+VD++F+R+G+AD+L G+STFMVEM E A IL AT +S VIL Sbjct: 647 MAQMGSFVPSSRARIGVVDRIFTRIGAADSLIRGQSTFMVEMNEVAQILCHATGRSLVIL 706 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQVS 793 DE+GRGT+T DGLSIAWA EYLH+ N R L ATH+H+LT+L+ + + N + V Sbjct: 707 DEVGRGTSTFDGLSIAWAVAEYLHDKNWIGARTLFATHYHQLTELAVAGTGYRNYNIAVK 766 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 + + IIFL K++PG + SYGIQV ++AG+P VI RA +IL EK Sbjct: 767 EWGDRIIFLRKIVPGGTNRSYGIQVARIAGVPEEVIVRAREILDNLEK 814 >gi|270295058|ref|ZP_06201259.1| DNA mismatch repair protein MutS [Bacteroides sp. D20] gi|270274305|gb|EFA20166.1| DNA mismatch repair protein MutS [Bacteroides sp. D20] Length = 871 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 300/886 (33%), Positives = 489/886 (55%), Gaps = 41/886 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+Q++++K+ +PD+++ +R GDFYE + DA++AS LGITLTKR GK I M G Sbjct: 8 TPMMKQFLDLKAKHPDAVMLFRCGDFYETYSTDAVVASEILGITLTKRANGKGKTIEMAG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KLI+ G R+AIC+Q+E P KK LV+R + LVTPG D +L Sbjct: 68 FPHHALDTYLPKLIRAGKRVAICDQLEDPKLTKK-----LVKRGITELVTPGVSINDNVL 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF--SEKE 203 + ++N+L AV + +A++DISTG F + D + + P+E++F ++ Sbjct: 123 NYRENNFLAAVHFGKGACGVAFLDISTGEFLTAEGPFDYVDKLLNNFAPKEVLFERGKRL 182 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + + S F T + F + + ++ ++ + + FG A+ A Sbjct: 183 MFEGNFGSKFFTF-----ELDDWVFTETSAREKLLKHFEVKNLKGFGVEHLKNGIIASGA 237 Query: 264 I-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 I Y+ TQ + R + + +D +LE++ +++ SLL ID +I Sbjct: 238 ILQYLIMTQHTQIGHVTSLARIEENKYVRLDKFTVRSLELMGSMNDGG-SSLLNVIDKTI 296 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 + G RL + PL D IN RL+ + +F + P I++ L D+ R +S++ Sbjct: 297 SPMGARLLKRWLVFPLKDVQPINERLNVVEYFFRQPDFKELIEEQLHLIGDLERIISKVA 356 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 +GR P+++ ++ +++ I + D L E+L + QS+ + + +D Sbjct: 357 VGRVSPREVVALKVALQAIEPIKAACMDAD-NASLNHIGEQLN-ICQSIRDRIDREIDND 414 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P GG ++ G A LDE R + K + +Q + +E T+I +LKI +NN GY+ Sbjct: 415 PPLLINKGGVIKSGVSAELDELRRIAYSGKDYLLQIQQRESELTEIPSLKIGYNNVFGYY 474 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IEV ++ + + +I +QT++N R+ T EL + E +I A + L++E + + Sbjct: 475 IEVRNTHKDKVPAE------WIRKQTLANAERYITQELKEYEEKILGAEDKILVLETQLY 528 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 L ++ E ++ + IA +D ++ A A+E NY RP+I + + GRHP++ Sbjct: 529 AELVQSLSEFIPAIQINANQIARLDCLLSFATAARENNYIRPVIADDDVLEIHQGRHPVI 588 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 EK L + +IAND L D + ++ ++TGPNM GKS LRQ ALI ++AQ+GS+ Sbjct: 589 EKQLP--IGEKYIANDVML----DSQTQQIIIITGPNMAGKSALLRQTALITLLAQIGSF 642 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA AHIG+VDK+F+RVG++DN++ G STFMVEM E A ILN + +S V+ DE+GRGT Sbjct: 643 VPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNLSPRSLVLFDELGRGT 702 Query: 743 ATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 +T DG+SIAWA +E++HE + R L ATH+HEL ++ KS KR N + V + + +I Sbjct: 703 STYDGISIAWAIVEHIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEIDNKVI 762 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 FL K+ G ++HS+GI V K+AG+P +++ RA DILK E N++ P ++ Sbjct: 763 FLRKLERGGSEHSFGIHVAKMAGMPKSIVKRANDILKQLET---DNRQQGISSKPMVEVG 819 Query: 861 ESKNNLSKNDKLFVEKIKC------LNLD--EMSPLTALKTLYAVK 898 E++ + + + + C LNLD ++PL AL L +K Sbjct: 820 ETRGGMQLSFFQLDDPVLCQIRDEILNLDVNNLTPLEALNKLNDIK 865 >gi|227484985|ref|ZP_03915301.1| possible DNA mismatch repair protein MutS [Anaerococcus lactolyticus ATCC 51172] gi|227236982|gb|EEI86997.1| possible DNA mismatch repair protein MutS [Anaerococcus lactolyticus ATCC 51172] Length = 869 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 313/896 (34%), Positives = 504/896 (56%), Gaps = 65/896 (7%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 ENL TPM+R Y+++K+ D+L+ YR+GDFYE FFDDA++ ++ L +TLT GK G Sbjct: 8 ENL---TPMLRHYVDVKNDFKDALLLYRVGDFYETFFDDAIITAKVLSLTLT--GKECGH 62 Query: 80 --DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 PMCGVP H + Y+ +L+K G+++A+C+QIE P +AK LV+R + R++TPG Sbjct: 63 VDRAPMCGVPHHVIDTYVNRLVKKGYKVALCDQIEDPKDAK-----GLVKRAITRVITPG 117 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTG------IFKISTSNHDRLISDIMR 191 TLT+ + L ++NYL+++ A+A+ DISTG I +S + + I I + Sbjct: 118 TLTDMESLENKENNYLLSIFENEYGLAMAYCDISTGKLVGLEIKTLSQNLGKKAIDQIEK 177 Query: 192 IDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS 251 I+P E++ + + + K + + N D+ E+R+ N D Sbjct: 178 INPSEMVLTSN-FDNEDIKKYLNLNNQIFINYINFTTDY---ENRVKTVNNYLGKDNLNK 233 Query: 252 FS--QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-G 308 ++ A A + YI K I E I + I+S R NLE+ R LS Sbjct: 234 IKDKRLIIVALANLLDYIYKYYEEKLDHINNIEILKINEFMEIESNTRKNLELTRNLSTN 293 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKIL 368 ++E +L+ +D + T G R+ + + PL D KIN RLD ++ F ++ IL + +L Sbjct: 294 NKENTLISILDQADTVMGSRMIHDWLERPLIDRDKINRRLDLVDGFYEDSILSRNVSNLL 353 Query: 369 KSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLK-KL 427 S D+ R L+++ R +D+ +++ I+ LK+ L + ++ L L Sbjct: 354 DSVYDLERLLAKISYKRANARDLISLKNSIKEMPK-----LKHVLADSTNNLIKNLGLNL 408 Query: 428 P--QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE 485 P + + + ++ + D+ P +GG ++ D LD + + D ++ + + K E Sbjct: 409 PDVEDIYELINKSIVDEPPINITEGGIIKSQYDKDLDNLKEMADTAEDKLIEYESKQREL 468 Query: 486 TKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 T IKNLK+ N N GY IEVT S+ + + +I +QT+ N R+TT EL ++ + Sbjct: 469 TGIKNLKVIFNKNNGYSIEVTKSNIDKIDQ------SYIRKQTLKNQERYTTEELENISS 522 Query: 546 RITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPI 605 I N L+E E F + I+ + L + S++IA ID + A +A + +YC+P Sbjct: 523 LILNGKEKINLLEYELFNKIVENILNSTLRLQSLSKMIANIDSLNSFAKIAHKYSYCKPN 582 Query: 606 IDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKST 665 I S + +GRHP++E L + FIAND ++ ++ + ++TGPNM GKST Sbjct: 583 ITESNEISIIEGRHPVIEINLDENE---FIANDTNIG----QDDNLIQIITGPNMAGKST 635 Query: 666 FLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILN 725 ++RQ ALI+IMAQ+GS+VPA A IGI DK+F+R+G++DN++ G STFM+EM E ++I+ Sbjct: 636 YMRQMALIIIMAQIGSFVPAKSAEIGICDKIFTRIGASDNISKGESTFMLEMNEVSNIIK 695 Query: 726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRF 785 +T +SFVILDE+GRGT++ DGLSIA A +EYL + + + + ATHFHELT L LK Sbjct: 696 NSTEKSFVILDEVGRGTSSDDGLSIAMALVEYLSKHKKVKTVFATHFHELTVLESELKNV 755 Query: 786 HNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH 845 N +++ + N +IFL K+ G +D SYGI+V KL+GLP+ ++ A +I+ EKL + Sbjct: 756 RNLKIEILEENNNLIFLRKISRGKSDRSYGIEVAKLSGLPDEILENAKNIM---EKLANE 812 Query: 846 NQKDMRLYYPEIQTKESKNNLS--KNDKL-----FVEKIKCLNLDEMSPLTALKTL 894 + ++ + KE KN+L KN K+ + +KI N++E++PL A+ L Sbjct: 813 D------FFEVNKGKEIKNSLEDIKNKKINELKSYTDKI---NINELTPLEAMNQL 859 >gi|192360641|ref|YP_001982817.1| DNA mismatch repair protein MutS [Cellvibrio japonicus Ueda107] gi|190686806|gb|ACE84484.1| DNA mismatch repair protein MutS [Cellvibrio japonicus Ueda107] Length = 875 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 310/887 (34%), Positives = 477/887 (53%), Gaps = 40/887 (4%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S TPMM+QY+ IK+ + D LVFYRMGDFYELFF+DA AS L +TLT RGK G+ IPM Sbjct: 10 SHTPMMQQYLRIKAQHRDDLVFYRMGDFYELFFEDAKRASELLDVTLTARGKSNGEPIPM 69 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G+P H A+ Y+ KL+K G +AI EQI P +K V R VVR+VTPGT++++ Sbjct: 70 AGIPFHAADGYLAKLVKAGVSVAIAEQIGDPAT-----SKGPVERKVVRIVTPGTVSDEA 124 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSEK 202 LL N L+A+ + + IA +D+++G F + + + ++ R++P E++ S+ Sbjct: 125 LLDSRRDNLLVALHQAGDTFGIASLDMASGRFLVLEVEGLEAALGELQRLNPAELLISD- 183 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS-FSQVEKTAAA 261 H L E + P +D +E + + + + FG + AA Sbjct: 184 ---HLTTPELVENRKGLRRRGP-WEYDLETAERLLVQQFAVKDLAGFGCDHLKTALCAAG 239 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 +SY ++TQ P + E+ + +D+A R NLE+ L+G E +L ++ Sbjct: 240 CLLSYARETQRTALPHVRSLAHENRDEAVILDAATRRNLELDTNLTGGDEHTLFWVLNRC 299 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G RL + PL D + R +I QN + ILK D+ R L RL Sbjct: 300 ATSMGSRLLRRWLNRPLRDIALLRGRQGAIAELQQN-YAFELVNNILKRVGDMERILGRL 358 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 + P+D++ + + + + + + P+ L +++ P L L + D Sbjct: 359 ALRSARPRDLSRLLMSLATYPELQSELAQRQAPQ-LTLLAQQISTFP-DLVDLLGRAIID 416 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + P RDGG + +G DA LDE R++ + + + L+ + E T I LK+ +N GY Sbjct: 417 NPPVVIRDGGVIAEGYDAELDELRNISTNAGQYLLDLETRERERTGIPTLKVGYNRIHGY 476 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IE+TS+ + D +I RQT+ N R+ T EL E++ +A + AL E Sbjct: 477 YIELTSAQSEKAPAD------YIRRQTLKNAERYITPELKAFEDKALSAQSRALAREKAL 530 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 +E L + + +Q L +++ +A +D+ LA A + RP + + ++ GRHP+ Sbjct: 531 YEELLDILNQQLVPLQDSAAAVAELDVLATLAERADALSLSRPELSETPGIEIQGGRHPV 590 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE Q +S PF+ ND + + ++TGPNMGGKST++RQ ALI ++A +GS Sbjct: 591 VE----QVTSAPFVPNDLVFNPQR-----HMLIITGPNMGGKSTYMRQAALIALLAHIGS 641 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA A IGIVD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT +S V++DEIGRG Sbjct: 642 FVPAQSARIGIVDRIFTRIGSSDDLAGGRSTFMVEMTETANILHNATAKSLVLMDEIGRG 701 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 T+T DGLS+AWA ++L E R L ATH+ E+T L +++ N L ++ + I+F Sbjct: 702 TSTFDGLSLAWACAKHLAEKVRAFTLFATHYFEITSLPETVPGIVNVHLNATEHQDKIVF 761 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKE 861 LHKV G A SYG+QV KLAG+P V+ A L E H + + Sbjct: 762 LHKVQEGPASKSYGLQVAKLAGIPAEVLREAQTQLHLLENGEHPHSIKTTTAESTVADPT 821 Query: 862 SKNNLSKN---DKLF-------VEKIKCLNLDEMSPLTALKTLYAVK 898 S + L + LF ++ +K +N D +SP AL+ +Y +K Sbjct: 822 SVDVLPTSPLQSGLFDALPNPALDALKKINPDNLSPREALEHIYRLK 868 >gi|262066715|ref|ZP_06026327.1| DNA mismatch repair protein MutS [Fusobacterium periodonticum ATCC 33693] gi|291379514|gb|EFE87032.1| DNA mismatch repair protein MutS [Fusobacterium periodonticum ATCC 33693] Length = 876 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 296/826 (35%), Positives = 484/826 (58%), Gaps = 31/826 (3%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TP+M+QY +IK + ++ +R+GDFYE+FF+DA +AS+ LG+TLTKR K G+D+ Sbjct: 1 MSTDTPLMQQYKKIKEEYQNEILMFRLGDFYEMFFEDAKVASKELGLTLTKRNKEKGQDV 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 P+ GVP H+ YI KL++ G+ +AICEQ+E P A +V+R V R++TPGT+ + Sbjct: 61 PLAGVPYHSVASYIAKLVEKGYSVAICEQVEDPKSAT-----GIVKREVTRVITPGTIID 115 Query: 142 DQLLSPTDSNYLMAVA--RIRTEWAIAWIDISTG---IFKISTSNH-DRLISDIMRIDPR 195 L ++NY+ V I AIA+ DI+TG +F+I N ++ +++I +I Sbjct: 116 VDFLDKNNNNYIACVKINTIENILAIAYADITTGEFSVFEIKDKNFFEKGLAEINKIQAS 175 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ- 254 EI+ EK +H+EY S+ E + + + + +E I Y++I +V+ F S+ Sbjct: 176 EILLDEK--THSEYISILEERISFSGVKFTEVKNVKKAEDYINSYFDIMSVEAFSLKSKD 233 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSL 314 + +AAA + YI Q N+ E ++I + + ++ + ++NL ++ + + +L Sbjct: 234 IAISAAANLLHYIDDLQKGNELPFSKIEYKNIDNIMELNISTQNNLNLVPKRAEESKGTL 293 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D +T G R + I +P D KI R +++F + +L +++ LK D+ Sbjct: 294 LGVLDSCVTSIGSRELKKIIKNPFLDIEKIKERQFYVDYFFNDVLLRENVREKLKDIYDI 353 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R ++ G KD+ ++D IR + L ++ +EL+ E ++ + Sbjct: 354 ERIAGKIIYGTENGKDLLSLKDSIRKSLETYKLLKEH---QELKKIFELDIEILLDIYNK 410 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + ++ + P R+GG ++DG ++ LDE R + K I ++ + E T IK LKIK Sbjct: 411 IELIIDTEAPFSVREGGIIKDGYNSELDELRRISKLGKDFILEIEQRERERTGIKGLKIK 470 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GYFIEVT ++ ++ +D +I +QT+ N R+ +L + E ++ A + Sbjct: 471 YNKVFGYFIEVTKANEHLVPED------YIRKQTLVNSERYIVPDLKEYEEKVITAKSKI 524 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 +E + F+ LS+ I E ESL + IA +DI A +A + +Y +P I + + Sbjct: 525 EALEYDLFKSLSSEIKEHIESLYKLANRIANLDIVSNFAHIATKNSYVKPEISENNILEI 584 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 K GRHPIVE + +S ++ ND L + L +LTGPNM GKST+++Q AL + Sbjct: 585 KGGRHPIVESLI---ASGTYVKNDIILDEKYN-----LIILTGPNMSGKSTYMKQVALNI 636 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMA +GSYV A YA I IVDK+F+RVG++D+L +G+STFM+EM E ASILN AT +SF++ Sbjct: 637 IMAHIGSYVAADYAKIPIVDKIFTRVGASDDLLTGQSTFMLEMTEVASILNNATEKSFIV 696 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDEIGRGT+T DG+SIA A EY+H + + ATH+HELT+L K L+R N ++V + Sbjct: 697 LDEIGRGTSTYDGISIATAITEYIHNNIGAKTIFATHYHELTELEKELERAINFRVEVKE 756 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + + ++FL +++ G AD SYGI+V +L+G+P V++R+ ILK E Sbjct: 757 NGKNVVFLREIVKGGADKSYGIEVARLSGVPKDVLNRSRKILKKLE 802 >gi|302338534|ref|YP_003803740.1| DNA mismatch repair protein MutS [Spirochaeta smaragdinae DSM 11293] gi|301635719|gb|ADK81146.1| DNA mismatch repair protein MutS [Spirochaeta smaragdinae DSM 11293] Length = 855 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 313/879 (35%), Positives = 475/879 (54%), Gaps = 41/879 (4%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY +K + D+++F+R+GDFYE+F DA S LG+TLTKR +PMCG+P Sbjct: 1 MMQQYRSLKERHRDAVLFFRLGDFYEMFERDAAEVSAILGLTLTKR-----NGLPMCGIP 55 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A YI +L+ G +IAICEQI P +G K + +R VV ++TPGT+ ++ L Sbjct: 56 YHAAGTYIPRLLWAGRKIAICEQIALP-----QGGKGIAKREVVEVITPGTVVDEDFLDR 110 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKIS----TSNHDRLISDIMRIDPREIIFSEKE 203 +NYL ++ +I + ++ID+STG F + + ++L ++ R+ P E++ E Sbjct: 111 GRNNYLASLGQIEGALSFSYIDLSTGEFAATLLGKENRFEKLRKELARLQPSELLVQESL 170 Query: 204 LSHA-EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT-AAA 261 L E + E + P+ +D SE+R+ + +T + FG A Sbjct: 171 LEEGPETVRILEERQILINRYPDWSYDLGDSEARLRRLFGVTNLKGFGILPDDHAIYACG 230 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 + Y+ +T + I R + + +D + + NLEI+ + S +L + +D Sbjct: 231 TLLEYLSETAHDHLRHISSIVRYEESDFVGLDESTQRNLEIVSNMRDASNAYTLFQVLDK 290 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G R R+ PL D I RLD + +N ++++ ++K L D+ R +R Sbjct: 291 TRTAPGARTLRSRLLHPLRDMKAITLRLDKVEELYRNQMILSALRKKLSGVLDLERLSAR 350 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + +G+ KD+A + I + I F + +P A E + + LEK L + Sbjct: 351 IALGKAHAKDLAAVASTITVILEIEQEFGEMRVPGSWMLAQEN-RSAAEELEKELRRAIC 409 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 DD +G +R+G LD R L+ S++++A + I NLKIK+N +G Sbjct: 410 DDPSVLLTEGNMIREGYSEELDRLRLLKRDSRKVLADYLEDEKNRSGIANLKIKYNKIIG 469 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 +FIEVT ++ S++ D FI RQ++ RFTT L +LE + +A+ + +E E Sbjct: 470 HFIEVTKANLSLVP------DHFIRRQSLVGAERFTTERLGELETELNSASEKMIQLEKE 523 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F L + + L ++ I ID ALA A Y RP I+ + +++GRHP Sbjct: 524 LFLSLRESCARRLPVLHTLAEYICDIDFFQALAYAATVHGYVRPDINTGNDIAIREGRHP 583 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE L ++ FI N D+ L+TGPNM GKST+LRQ ALIV+MAQ G Sbjct: 584 VVEAGL---NAGEFIPNSIDIGAKK-----SFALITGPNMAGKSTYLRQTALIVLMAQCG 635 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA A IGIVD++F RVG++DNLA G STF+VEM ETA IL A+ +S VI+DE+GR Sbjct: 636 SFVPAMEATIGIVDRIFCRVGASDNLARGESTFLVEMNETAYILRTASEKSLVIMDEVGR 695 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK-SLKRFHNATLQVSDSNEGI 799 GT+T DGL+IAWA E L E + + L ATHFHELT+L S+++ L V + + + Sbjct: 696 GTSTTDGLAIAWAVSEALIE-RKTKTLFATHFHELTELQHDSIQKLR---LMVKEEGDRV 751 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 IFL KV G A SYGI V LAG+P+ V+SRA IL E KDM P+ ++ Sbjct: 752 IFLKKVEEGCAAGSYGIHVASLAGVPDPVLSRARQILGELEHRDRPIPKDM---VPQRKS 808 Query: 860 KESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++S ++ND L +I ++LD ++P AL LY K Sbjct: 809 QKSDLLFNEND-LIESEIMSIDLDSLTPKKALDILYRWK 846 >gi|254514873|ref|ZP_05126934.1| DNA mismatch repair protein MutS [gamma proteobacterium NOR5-3] gi|219677116|gb|EED33481.1| DNA mismatch repair protein MutS [gamma proteobacterium NOR5-3] Length = 846 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 305/872 (34%), Positives = 488/872 (55%), Gaps = 37/872 (4%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+Q++ IK +P+ L+FYRMGDFYELF+DDA A+ L ITLT RGK G+DIPM GVP Sbjct: 1 MMQQFLRIKRDHPNELLFYRMGDFYELFYDDARRAAELLDITLTARGKSAGEDIPMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A Y+ +L+K G +AI EQI P +K V R VVR+VTPGTL+++ LL Sbjct: 61 YHAAEGYLARLVKAGISVAIAEQIGDPAT-----SKGPVERKVVRVVTPGTLSDEALLEE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSEKELSH 206 L+A+ +T + +A++D+ +G F++ + L+ +I R+DP E+++ H Sbjct: 116 KREQLLVALIAQQTRYGLAYLDLGSGRFRLMELDGEEALLGEIERLDPAELLY------H 169 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAAAAAIS 265 E++ T A +QP FD +E + + + + FG + ++ AA IS Sbjct: 170 EEFQHPTVTARPGARSQPAWEFDLESAERNLREQFQTHDLRGFGCDNLRLGIAAAGCLIS 229 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y++ TQ P I E + ++ +D+A R NLEI R L G+ +L+ +D T Sbjct: 230 YVRDTQRSQLPHITAIAPEMREDSVVLDAATRRNLEIDRNLGGTDTHTLMSVMDRCRTSM 289 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 G R + PLT + R D++ +N ++ +L+ DV R ++R+ +G Sbjct: 290 GSRCLRRWLHRPLTSIPTLKKRQDALGALREN-YRFEALRDVLRPIGDVERIITRVALGS 348 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPT 445 P+D+ + ++S + L + + L+ V L P +E L + D+ P Sbjct: 349 ARPRDLTRLLFALQS-VPALRDATPTEDSQALQATVTALGDFPLMVE-LLDRAIIDNPPV 406 Query: 446 FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEV 505 RDGG + G D+ LDE RS+ + + + +++ + E T + +LK+ +N GY+IE+ Sbjct: 407 VLRDGGVIATGYDSQLDELRSISENAAGFLVAIETRERERTGLASLKVGYNRVHGYYIEL 466 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEIL 565 + + + + + + RQT+ N+ RF T EL + E++ ++ + AL E + + L Sbjct: 467 SRNQSDDVPVE------YQRRQTLKNVERFITPELKEFEDKALSSKSRALAREKQLYAEL 520 Query: 566 SNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKT 625 + E E+L N + +A +D+ LA + + CRP + + GRH +VE+ Sbjct: 521 LATLQESLEALRNCASAMAELDVYATLAERSHSLDLCRPEFSETPCLDIDQGRHLVVEQV 580 Query: 626 LKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPA 685 L++ PFIAND L ND+ ++ L+TGPNMGGKST++RQNA+I ++A +GSYVPA Sbjct: 581 LEE----PFIANDTLL---NDER--RMLLITGPNMGGKSTYMRQNAIITLLAHVGSYVPA 631 Query: 686 SYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATL 745 + VD++F+R+G+AD+LASGRSTFMVEM ETA+IL+ A+++S V++DE+GRGT+T Sbjct: 632 RAVVLSTVDRIFTRIGAADDLASGRSTFMVEMTETANILHNASDRSLVLMDEVGRGTSTF 691 Query: 746 DGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKV 805 DGLS+AWA +L E R L ATH+ ELT L+ L N L + E ++F+H++ Sbjct: 692 DGLSLAWAAALHLAEKTRAFTLFATHYFELTALADQLPTVSNVHLDAVEHREHVVFMHRI 751 Query: 806 IPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNN 865 G A+ S+G+QV KLAG+P +V+ A L+ E + N D P + + + + Sbjct: 752 QEGPANRSFGLQVAKLAGVPASVLQAAAGKLRELE---NQNPTD-NAQAPAVGSPIPQGD 807 Query: 866 L--SKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 L D + ++ + D +SP AL+ LY Sbjct: 808 LFAENPDHPALALLRDSDPDSLSPREALQLLY 839 >gi|325281290|ref|YP_004253832.1| DNA mismatch repair protein mutS [Odoribacter splanchnicus DSM 20712] gi|324313099|gb|ADY33652.1| DNA mismatch repair protein mutS [Odoribacter splanchnicus DSM 20712] Length = 871 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 298/822 (36%), Positives = 457/822 (55%), Gaps = 30/822 (3%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 + TP+M+QY K+ PD+++ YRMGDFYE F DA+ SR LGITLTKR + + Sbjct: 7 NETPLMQQYYATKAKYPDAILLYRMGDFYETFGADAITTSRILGITLTKRSSGSPGTVEL 66 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G P H + Y+ KL++ G R+AICEQ+E P + K LV+R V+ LVTPG + Sbjct: 67 AGFPYHAIDTYLPKLVRAGQRVAICEQLEDP-----KKTKFLVKRGVIELVTPGACYSEY 121 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 + +L +V +TE ++ +D+STG F + +H + + P+E+I+ + Sbjct: 122 STDTKSNIFLASVYFNKTEAGLSLLDLSTGEFLTTEGSHATIDKLLNSFQPKEVIYPRGQ 181 Query: 204 LSHAEYKSLFETLGNVAVAQP--NVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAA 260 A + LF GN P FFD + R+ ++ + ++ FG ++A Sbjct: 182 --EARFHELF---GNKFYIYPIEEWFFDRDAASERLEKHFEVNSLKGFGIEHMNCGISSA 236 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 A ++Y++ T+ I R D + +D NLE+L + + +SL+ ID Sbjct: 237 GAILNYLEMTKHDMISHITSISRIDESHCVLLDKFTLRNLELLHS-AYEEGRSLVDIIDR 295 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 +IT GGR I PL +IN RLD ++ FI+ + L+S D+ R S+ Sbjct: 296 TITPMGGRTLRRWICMPLKSPEEINQRLDIVDHFIRQEDRRLQAENFLESIGDLERLASK 355 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + +GR P+++ ++ + S I L + ++ E L + EK + L Sbjct: 356 IGVGRITPREMNQLKIAL-SCIAPLKDLCQQSESAVMKKMTEPLNPCTELFEK-IKFQLQ 413 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 ++ P GG + G +A LDE R++ K ++ +Q + E T I +LKI NN G Sbjct: 414 ENAPHQVNKGGVIATGVNAELDELRNISSNGKELLLQMQQREIEATGIPSLKIGFNNVFG 473 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IEVT + KD ++ +I +QT+ N R+ T EL + E++I A + L IE E Sbjct: 474 YYIEVTKA-----HKD-KAPANWIRKQTLVNGERYITPELKEYEDKILGAEDRILAIETE 527 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 + L L +++I+ +D+ I+ A ++ NY RP I++S +K GRHP Sbjct: 528 LYNNLLQEAAGYIRPLQEDAKIISALDVLISFAEISIANNYHRPEINDSDVLDIKAGRHP 587 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 ++EK L + +I+ND L D ++ ++TGPNM GKS LRQ ALIVIMAQ G Sbjct: 588 VIEKQLP--PGEEYISNDVLL----DNKKQQIIIITGPNMAGKSALLRQTALIVIMAQAG 641 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 +VPA+ A IG VDK+F+RVG++DN++ G STFMVEM E A+ILN +++S V+ DE+GR Sbjct: 642 CFVPAASAKIGYVDKIFTRVGASDNISQGESTFMVEMNEAANILNNISDRSLVLFDELGR 701 Query: 741 GTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GT+T DG+SIAWA +EYLHE + + L ATH+HEL ++ S K+ N + V + Sbjct: 702 GTSTYDGISIAWAIVEYLHEHPKYHAKTLFATHYHELNEMEHSFKKIKNYNVSVKEVAHK 761 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 +IFL K++ G ++HS+GIQVGK+AGLP +VI RA +ILK E Sbjct: 762 VIFLRKLVKGGSNHSFGIQVGKMAGLPQSVIKRADEILKQLE 803 >gi|261401552|ref|ZP_05987677.1| DNA mismatch repair protein MutS [Neisseria lactamica ATCC 23970] gi|269208391|gb|EEZ74846.1| DNA mismatch repair protein MutS [Neisseria lactamica ATCC 23970] Length = 865 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 313/887 (35%), Positives = 472/887 (53%), Gaps = 49/887 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM+QY+ IKS + D LVFYRMGDFYELF DDA+ A++ L ITLT RG+ G I M G Sbjct: 7 SPMMQQYLAIKSQHADKLVFYRMGDFYELFLDDAVEAAKLLDITLTTRGQMDGVPIKMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ +L+K+G +A+CEQ+ + K V R VVR+VTPGTLT+ L Sbjct: 67 VPFHAAEQYLARLVKMGKSVAVCEQV-----GEVGAGKGPVERKVVRIVTPGTLTDAAFL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 ++N + AV + AIAW + +G FK + D+L ++ R+ EI+ E + Sbjct: 122 EDKETNRIAAVNIDKKHIAIAWASLQSGEFKTKLTTADKLADELARLQAAEILLPEGKSL 181 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG---SFSQVEKTAAAA 262 +++ F N+ P F + + +Y+ + FG + AA A Sbjct: 182 PDGFQANFS---NITCLNPWQFAADA-GAKLLTEYFGCQDLHGFGLDGKEHEAAVGAAGA 237 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 ++YI+ TQ + + E + +D+A R NLEI +TLSG + +L +D Sbjct: 238 LLNYIRLTQNLMPQHLDGISLETDSQYIGMDAATRRNLEITQTLSGKKSPTLFSILDGCA 297 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G RL A + PL I R +++ P+Q LKS D+ R +R+ Sbjct: 298 THMGSRLLALWLHHPLRSRAHIRARQEAVAALESQ---YKPLQCRLKSIADIERIAARIA 354 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL-PQSL--EKTLSSML 439 +G P+D+A +RD + + I +L E +E K + P++L +TL + + Sbjct: 355 VGNARPRDLAALRDSLFALSEI-------ELSAEGSSLLETFKAIFPETLPVAETLKAAV 407 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + + +DGG + G A LDE R +++ + L+ + E T + LK++ N Sbjct: 408 MPEPAVWLKDGGVINQGYSAELDELRHIQNHGDEFLLELEARERERTGLSTLKVEFNRVH 467 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 G++IE++ + A D + RQT+ N RF T EL E+++ A AL +E Sbjct: 468 GFYIELSKTQAGQAPAD------YQRRQTLKNAERFITPELKTFEDKVLTAQEQALALEK 521 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 FE L + L A++ A +D+ A +A E + RP + +++GRH Sbjct: 522 RLFEALLKEVQTALPQLQKAAKAAAALDVLSTFAAIAAEHGFVRPEFADYPVIRIENGRH 581 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE+ ++ F AN DL N K+ +L LLTGPNMGGKST++RQ ALIV++A Sbjct: 582 PVVEQQVRH-----FTANHTDL---NHKH--RLILLTGPNMGGKSTYMRQVALIVLLAHT 631 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPA A I VD++F+R+G++D+LAS RSTFMVEM ETA IL+ AT QS V++DE+G Sbjct: 632 GSFVPADSARIDPVDQIFTRIGASDDLASNRSTFMVEMSETACILHHATEQSLVLMDEVG 691 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGT+T DGL+IA A +L + N+ L ATH+ ELT L ++ N L + I Sbjct: 692 RGTSTFDGLAIAHAVAGHLLQKNKSFSLFATHYFELTRLPETCAAAVNMHLSALEQGRDI 751 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY----- 854 +FLH++ PG A SYGI V KLAGLPN + A L E Q + ++ Sbjct: 752 VFLHQIQPGPAGKSYGIAVAKLAGLPNRALKAAQKYLDELEAQAADAQPQLDIFNLAQEG 811 Query: 855 ---PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + T + S++D + E + L+ D+++PL AL LY +K Sbjct: 812 RGGSDAGTPADDDAGSRSDGILTETLNRLDPDKLTPLEALSELYRLK 858 >gi|294783334|ref|ZP_06748658.1| DNA mismatch repair protein MutS [Fusobacterium sp. 1_1_41FAA] gi|294480212|gb|EFG27989.1| DNA mismatch repair protein MutS [Fusobacterium sp. 1_1_41FAA] Length = 876 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 294/826 (35%), Positives = 483/826 (58%), Gaps = 31/826 (3%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TP+M+QY +IK + ++ +R+GDFYE+FF+DA +AS+ LG+TLTKR K G+D+ Sbjct: 1 MSTDTPLMQQYKKIKEEYQNEILMFRLGDFYEMFFEDAKIASKELGLTLTKRNKEKGQDV 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 P+ GVP H+ YI KL++ G+ +AICEQ+E P + +V+R V R++TPGT+ + Sbjct: 61 PLAGVPYHSVASYIAKLVEKGYSVAICEQVEDP-----KAATGIVKREVTRVITPGTIID 115 Query: 142 DQLLSPTDSNYLMAVA--RIRTEWAIAWIDISTG---IFKISTSNH-DRLISDIMRIDPR 195 L ++NY+ V I AIA+ DI+TG +F+I N ++ +++I +I Sbjct: 116 VDFLDKNNNNYIACVKINTIENILAIAYADITTGEFSVFEIKDKNFFEKGLAEINKIQAS 175 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ- 254 EI+ EK +++EY S+ E + + + + +E + Y++I +V+ F S+ Sbjct: 176 EILLDEK--TYSEYISILEERISFSGVKFTEIKNVKKAEDYLTSYFDIMSVEAFSLKSKD 233 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSL 314 + + AA + YI Q N+ E ++I + + ++ + ++NL ++ + + +L Sbjct: 234 LAVSVAANLLHYIDDLQKGNELPFSKIEYKNIDNIMELNISTQNNLNLVPKRNEESKGTL 293 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D +T G R + I +P D KI R +++F + +L +++ LK D+ Sbjct: 294 LGVLDSCVTSIGSRELKKIIKNPFLDMEKIKERQFYVDYFFNDVLLRENVREKLKDIYDI 353 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R ++ G KD+ ++D IR + L ++ +EL+ E ++ + Sbjct: 354 ERIAGKIIYGTENGKDLLSLKDSIRKSLETYKLLKEH---QELKKIFELDIEILLDIYNK 410 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + ++ + P R+GG ++DG ++ LDE R + K I ++ + E T IK LKIK Sbjct: 411 IELIIDVEAPFSVREGGIIKDGYNSELDELRRISKLGKDFILEIEQRERERTGIKGLKIK 470 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GYFIEVT ++ ++ +D +I +QT+ N R+ +L + E ++ A + Sbjct: 471 YNKVFGYFIEVTKANEHLVPED------YIRKQTLVNSERYIVPDLKEYEEKVITAKSKI 524 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 +E E F+ LS+ I E ESL + IA +DI A +A + +Y +P I + Sbjct: 525 EALEYELFKSLSSEIKEHIESLYKLANRIANLDIVSNFAHVATKNSYVKPEISEENILEI 584 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 K GRHPIVE + +S ++ ND L N+ L +LTGPNM GKST+++Q AL + Sbjct: 585 KGGRHPIVESLI---ASGSYVKNDIVLDEKNN-----LIILTGPNMSGKSTYMKQVALNI 636 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMA +GSYV A YA I IVDK+F+RVG++D+L +G+STFM+EM E ASILN AT +SF++ Sbjct: 637 IMAHIGSYVAADYAKIPIVDKIFTRVGASDDLLTGQSTFMLEMTEVASILNNATEKSFIV 696 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDEIGRGT+T DG+SIA A EY+H + + ATH+HELT+L K L+R N ++V + Sbjct: 697 LDEIGRGTSTYDGISIATAITEYIHNNIGAKTIFATHYHELTELEKELERAINFRVEVKE 756 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + + ++FL +++ G AD SYGI+V +L+G+P V++R+ ILK E Sbjct: 757 NGKNVVFLREIVKGGADKSYGIEVARLSGVPKDVLNRSRKILKKLE 802 >gi|170680116|ref|YP_001744884.1| DNA mismatch repair protein MutS [Escherichia coli SMS-3-5] gi|226723060|sp|B1LQ55|MUTS_ECOSM RecName: Full=DNA mismatch repair protein mutS gi|170517834|gb|ACB16012.1| DNA mismatch repair protein MutS [Escherichia coli SMS-3-5] Length = 853 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 312/889 (35%), Positives = 489/889 (55%), Gaps = 51/889 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R L+RL + P+D+A +R + + L L+N ++ EK+ + + L Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ-LPELRALLENVDSAPVQALREKMGEFAE-LRD 405 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + D P RDGG + G + LDE R+L D + + L+++ E T + LK+ Sbjct: 406 LLERAIIDTPPVLVRDGGVIAPGYNEELDEWRALADGATDYLERLEVRERERTGLDTLKV 465 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + Sbjct: 466 GFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKEYEDKVLTSKGK 519 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY P + Sbjct: 520 ALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFIDKPGIR 579 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 580 ITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTALI 630 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V Sbjct: 631 ALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLV 690 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L Sbjct: 691 LMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH---NQKDM 850 + + I F+H V G A SYG+ V LAG+P VI RA L+ E + + Q D Sbjct: 751 EHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESISPNAAATQVD- 809 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 810 -------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|218701226|ref|YP_002408855.1| DNA mismatch repair protein MutS [Escherichia coli IAI39] gi|226723057|sp|B7NT79|MUTS_ECO7I RecName: Full=DNA mismatch repair protein mutS gi|218371212|emb|CAR19043.1| methyl-directed mismatch repair protein [Escherichia coli IAI39] Length = 853 Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust. Identities = 312/889 (35%), Positives = 489/889 (55%), Gaps = 51/889 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R L+RL + P+D+A +R + + L L+N ++ EK+ + + L Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ-LPELRALLENVDSAPVQALREKMGEFAE-LRD 405 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + D P RDGG + G + LDE R+L D + + L+++ E T + LK+ Sbjct: 406 LLERAIIDTPPVLVRDGGVIAPGYNEELDEWRALADGATDYLERLEVRERERTGLDTLKV 465 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + Sbjct: 466 GFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKEYEDKVLTSKGK 519 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY P + Sbjct: 520 ALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFIDKPGIR 579 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 580 ITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTALI 630 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V Sbjct: 631 ALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLV 690 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L Sbjct: 691 LMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH---NQKDM 850 + + I F+H V G A SYG+ V LAG+P VI RA L+ E + + Q D Sbjct: 751 EHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESISPNAAATQVD- 809 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 810 -------GTQMSLLSVQEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|237739610|ref|ZP_04570091.1| DNA mismatch repair protein mutS [Fusobacterium sp. 2_1_31] gi|229423218|gb|EEO38265.1| DNA mismatch repair protein mutS [Fusobacterium sp. 2_1_31] Length = 877 Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust. Identities = 294/826 (35%), Positives = 484/826 (58%), Gaps = 31/826 (3%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TP+M+QY +IK + ++ +R+GDFYE+FF+DA +AS+ LG+TLTKR K G+D+ Sbjct: 1 MSTDTPLMQQYKKIKEEYQNEILMFRLGDFYEMFFEDAKIASKELGLTLTKRNKEKGQDV 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 P+ GVP H+ YI KL++ G+ +AICEQ+E P + +V+R V R++TPGT+ + Sbjct: 61 PLAGVPYHSVASYIAKLVEKGYSVAICEQVEDP-----KAATGIVKREVTRVITPGTIID 115 Query: 142 DQLLSPTDSNYLMAVA--RIRTEWAIAWIDISTG---IFKISTSNH-DRLISDIMRIDPR 195 L ++NY+ V I AIA+ DI+TG +F+I N ++ +++I +I Sbjct: 116 VDFLDKNNNNYIACVKINTIENILAIAYADITTGEFSVFEIKDKNFFEKGLAEINKIQAS 175 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ- 254 EI+ EK +++EY S+ E + + + + +E + Y++I +V+ F S+ Sbjct: 176 EILLDEK--TYSEYISILEERISFSGVKFTEIKNVKKAEDYLTSYFDIMSVEAFSLKSKD 233 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSL 314 + +AAA + YI Q N+ E ++I + + ++ + ++NL ++ + + +L Sbjct: 234 LAISAAANLLHYIDDLQKGNELPFSKIEYKNINNIMELNISTQNNLNLVPKRNEESKGTL 293 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D +T G R + I +P D KI R +++F + +L +++ LK D+ Sbjct: 294 LGVLDGCVTSIGSRELKKIIKNPFLDIDKIKERQFYVDYFFNDVLLRENVREKLKDIYDI 353 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R ++ G KD+ ++D IR + L ++ +EL+ E ++ + Sbjct: 354 ERIAGKIIYGTENGKDLLSLKDSIRKSLETYKLLKEH---QELKKIFELDIEILLDIYNK 410 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + ++ + P R+GG ++DG ++ LDE R + K I ++ + E T IK LKIK Sbjct: 411 IELIIDAEAPFSVREGGIIKDGYNSELDELRRISKLGKDFILEIEQRERERTGIKGLKIK 470 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GYFIEVT ++ ++ +D +I +QT+ N R+ +L + E ++ A + Sbjct: 471 YNKVFGYFIEVTKANEHLVPED------YIRKQTLVNSERYIVPDLKEYEEKVITAKSKI 524 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 +E + F+ LS+ I E ESL + IA +DI A +A + +Y +P I + Sbjct: 525 EALEYDLFKSLSSEIKEHIESLYKLANRIANLDIVSNFAHIATKNSYVKPEISEENILEI 584 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 K GRHPIVE + +S ++ ND L N+ L +LTGPNM GKST+++Q AL + Sbjct: 585 KGGRHPIVESLI---ASGSYVKNDIVLDEKNN-----LIILTGPNMSGKSTYMKQVALNI 636 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMA +GSYV A YA I IVDK+F+RVG++D+L +G+STFM+EM E ASILN AT +SF++ Sbjct: 637 IMAHIGSYVAADYAKIPIVDKIFTRVGASDDLLTGQSTFMLEMTEVASILNNATEKSFIV 696 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDEIGRGT+T DG+SIA A EY+H + + ATH+HELT+L K L+R N ++V + Sbjct: 697 LDEIGRGTSTYDGISIATAITEYIHNNIGAKTIFATHYHELTELEKELERAINFRVEVKE 756 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + + ++FL +++ G AD SYGI+V +L+G+P V++R+ ILK E Sbjct: 757 NGKNVVFLREIVKGGADKSYGIEVARLSGVPKDVLNRSRKILKKLE 802 >gi|254303689|ref|ZP_04971047.1| DNA mismatch repair protein MutS [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|22087665|gb|AAM90996.1|AF525506_1 DNA mismatch repair protein [Fusobacterium nucleatum] gi|148323881|gb|EDK89131.1| DNA mismatch repair protein MutS [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 877 Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust. Identities = 309/892 (34%), Positives = 521/892 (58%), Gaps = 39/892 (4%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TP+M+QY +IK + ++ +R+GDFYE+FF+DA +AS+ LG+TLTKR K G+D+ Sbjct: 1 MSADTPLMQQYKKIKEEYKNEILMFRLGDFYEMFFEDAKIASKELGLTLTKRNKEKGQDV 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 P+ GVP H+ YI +L++ G+ +AIC+Q+E P A +V+R V R++TPGT+ + Sbjct: 61 PLAGVPYHSVASYIARLVEKGYSVAICDQVEDPKSAT-----GIVKREVTRVITPGTIID 115 Query: 142 DQLLSPTDSNYLMAVARIRTE--WAIAWIDISTG---IFKISTSNH-DRLISDIMRIDPR 195 L ++NY+ + TE AIA+ DI+TG +F+I N ++ ++++ +I Sbjct: 116 VDFLDKNNNNYIACIKINTTENIAAIAYADITTGEFSVFEIKGKNFFEKALAEMNKIQAS 175 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ- 254 EI+ EK +++EY +F+ + + + + +E+ I Y+NI +V+ F S+ Sbjct: 176 EILLDEK--TYSEYIEIFKEKISFSGVKFTEVSNLKKAENFITSYFNIMSVEVFSLKSKD 233 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSL 314 + + +A + YI + Q N E ++I + + ++ + ++NL ++ + +L Sbjct: 234 LAISTSANLLHYIDELQKGNDLPFSKIEYKNIDNIMELNISTQNNLNLVPKRNEETRGTL 293 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D IT G R + I +P + KI R +++F + +L I++ LK D+ Sbjct: 294 LGVLDNCITSVGSRELKKIIKNPFLNIEKIKQRQFYVDYFYNDVLLRESIREYLKDIYDI 353 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R ++ G KD+ ++D IR + I L ++ +E++ ++ K+ + Sbjct: 354 ERIAGKIIYGTENGKDLLSLKDSIRKSLEIYRLLKEH---QEIKDILDIDVKILLDIYNK 410 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + +++ + P R+GG ++DG ++ LDE R + K I ++ + E T IK LKIK Sbjct: 411 IELIINIEAPFSVREGGIIKDGYNSELDELRKISKLGKDFILEIEQREKERTGIKGLKIK 470 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GYFIEVT ++ ++ +D +I +QT+ N R+ +L + E ++ A + Sbjct: 471 YNKVFGYFIEVTKANEHLVPED------YIRKQTLVNSERYIVPDLKEYEEKVITAKSKI 524 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 +E E F+ L++ I E +SL + IA +DI A +A + +Y +P ++ + Sbjct: 525 EALEYELFKQLTSEIKEHIDSLYKLANRIANLDIVSNFAHIATKNSYVKPEMNEGEILEI 584 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 K GRHPIVE + S ++ ND L +DKN+ L +LTGPNM GKST+++Q AL + Sbjct: 585 KGGRHPIVETLI---PSGTYVKNDIIL---DDKNN--LIILTGPNMSGKSTYMKQVALNI 636 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMA +GSYV A YA I IVDK+F+RVG++D+L +G+STFM+EM E ASILN AT +SFV+ Sbjct: 637 IMAHIGSYVAADYAKIPIVDKIFTRVGASDDLLTGQSTFMLEMTEVASILNSATKKSFVV 696 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDEIGRGT+T DG+SIA A EY+H + + ATH+HELT+L K L+R N ++V + Sbjct: 697 LDEIGRGTSTYDGISIATAITEYIHNVIGAKTIFATHYHELTELEKELERAINFRVEVKE 756 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE---KLYHHNQK--D 849 ++ ++FL +++ G AD SYGI+V +L+G+P V++R+ ILK E L + K Sbjct: 757 DSKNVVFLREIVKGGADKSYGIEVARLSGVPKEVLNRSRKILKKLETRKNLIENKIKAEQ 816 Query: 850 MRLYYPEIQTKESKNN---LSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 M L+ ++ + LS+N+ ++ +K ++L+ MSPL +L L +K Sbjct: 817 MMLFGTGLEEDFEEEETEILSENEVKVLDILKNMDLNSMSPLESLLKLNELK 868 >gi|300941112|ref|ZP_07155624.1| DNA mismatch repair protein MutS [Escherichia coli MS 21-1] gi|300454155|gb|EFK17648.1| DNA mismatch repair protein MutS [Escherichia coli MS 21-1] Length = 853 Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust. Identities = 310/887 (34%), Positives = 489/887 (55%), Gaps = 47/887 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVD--TFGSFSQVE 256 ++E AE SL E + ++ I +R T D +FG + Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVSFGVENAPR 232 Query: 257 KTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E +L Sbjct: 233 GLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENTLA 292 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D+ Sbjct: 293 SVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAELQPVLRQVGDLE 349 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R L+RL + P+D+A +R + + L L+N ++ EK+ + + L L Sbjct: 350 RILARLALRTARPRDLARMRHAFQQ-LPELRALLENVDSAPVQALREKMGEFAE-LRDLL 407 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + D P RDGG + G + LDE R+L D + + L+++ E T + LK+ Sbjct: 408 ERAIIDTPPVLVRDGGVIAPGYNEELDEWRALADGATDYLERLEVRERERTGLDTLKVGF 467 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + AL Sbjct: 468 NAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKEYEDKVLTSKGKAL 521 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E + +E L + ++ E+L ++ +A +D+ + LA A NY P + + Sbjct: 522 ALEKQLYEELFDLLLPHLETLQQSASALAELDVLVNLAERAYTLNYTCPTFIDKPGIRIT 581 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNMGGKST++RQ ALI + Sbjct: 582 EGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTALIAL 632 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V++ Sbjct: 633 MAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLM 692 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 693 DEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALEH 752 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH---NQKDMRL 852 + I F+H V G A SYG+ V LAG+P VI RA L+ E + + Q D Sbjct: 753 GDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESISPNAAATQVD--- 809 Query: 853 YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 810 -----GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|134296270|ref|YP_001120005.1| DNA mismatch repair protein MutS [Burkholderia vietnamiensis G4] gi|189030766|sp|A4JFW7|MUTS_BURVG RecName: Full=DNA mismatch repair protein mutS gi|134139427|gb|ABO55170.1| DNA mismatch repair protein MutS [Burkholderia vietnamiensis G4] Length = 886 Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust. Identities = 313/904 (34%), Positives = 471/904 (52%), Gaps = 56/904 (6%) Query: 17 DLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKH 76 D + +++ TPMM+QY+ IK+ +PD+LVFYRMGDFYELFF+DA A+R L +TLT+RG Sbjct: 5 DSPKGIETHTPMMQQYLRIKADHPDTLVFYRMGDFYELFFEDAEKAARLLDLTLTQRGAS 64 Query: 77 LGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTP 136 G I M GVP H Y+ KL+K+G +AICEQI P +K V R VVR+VTP Sbjct: 65 AGNPIKMAGVPHHAVEQYLAKLVKMGESVAICEQIGDPAT-----SKGPVERKVVRVVTP 119 Query: 137 GTLTEDQLLSPTDSNYLMAVAR------IRTEWAIAWIDISTGIFKISTSNHDRLISDIM 190 GTLT+ LLS + YL+A+ + +AW+++++G +++ D+L + + Sbjct: 120 GTLTDAALLSDKNDVYLLAMYTGHNKRGVAVNIGLAWLNLASGALRLAEIEPDQLGAALE 179 Query: 191 RIDPREIIFSEKELSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTF 249 RI P EI+ ++ G AV + P FD + R+ D ++ +D F Sbjct: 180 RIRPAEILTADGATDAV-------PAGAGAVKRVPAWHFDIASGTQRLCDQLDVAGLDGF 232 Query: 250 GSFSQVEKTAAAAAISYIKK-TQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG 308 G+ S AA A+ TQ + + E + +D A R NLE+ TL G Sbjct: 233 GAHSLTSACGAAGALLLYAAATQGQQLRHVRSLKVESETEYIGLDPATRRNLELTETLRG 292 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILIN--PIQK 366 + +L +D T G RL + P S +R +I + P N ++ Sbjct: 293 TESPTLYSLLDTCCTTMGSRLLRHWLHHPPRASVAAQSRQQAIGALLDAPADANLDALRS 352 Query: 367 ILKSSPDVPRSLSRLKIGRGEPKDIAVIRD------GIRSGINILNLFLKNDLPEELRGA 420 L+ DV R RL + P+D++ +RD +R I+ + + N + Sbjct: 353 ALRQIADVERITGRLALLSARPRDLSSLRDTFAALPALRERISAI---VAN---ADALAR 406 Query: 421 VEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 V+ P L+S ++ + RDGG + G DA LDE R + + + + L+ Sbjct: 407 VDAALAPPAECLDLLTSAIAPEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLEA 466 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 + T I NL++++N G++IEVT + D + RQT+ N R+ T EL Sbjct: 467 RERARTGIANLRVEYNKVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPEL 520 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 E++ +A AL E ++ + A++ + +A +D+ A A A+ + Sbjct: 521 KTFEDKALSAQERALARERALYDGVLQALLPFIPECQRVASALAELDVLAAFAERARTLD 580 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 + P + ++ GRHP+VE ++Q FIANDC D+ KL L+TGPNM Sbjct: 581 WVAPTFTDDIGIEIEQGRHPVVEAQVEQ-----FIANDCRFGA--DR---KLLLITGPNM 630 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GGKSTF+RQ ALI +MA +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E Sbjct: 631 GGKSTFMRQTALIALMAYVGSYVPAKSACFGPIDRIFTRIGAADDLAGGRSTFMVEMTEA 690 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 A+ILN AT QS V++DEIGRGT+T DGL++AWA +L N C L ATH+ ELT L Sbjct: 691 AAILNDATPQSLVLMDEIGRGTSTFDGLALAWAIARHLLAQNGCYTLFATHYFELTQLPS 750 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N L + GI+FLH V G A+ SYG+QV +LAG+P VI A L E Sbjct: 751 EFPQAANVHLSAVEHGHGIVFLHAVNEGPANQSYGLQVAQLAGVPAPVIRAARKHLAYLE 810 Query: 841 K---LYHHNQKDMRLYYPEIQTK-ESKNNLSKNDKLF--VEKIKCLNLDEMSPLTALKTL 894 + H Q D+ P E + + +D +++++ ++ D++ P AL L Sbjct: 811 QQSAAQHTPQLDLFSAPPAAADDVECADAPAPSDATHPALDRLRDIDPDDLKPREALDLL 870 Query: 895 YAVK 898 Y ++ Sbjct: 871 YELR 874 >gi|332654851|ref|ZP_08420593.1| DNA mismatch repair protein MutS [Ruminococcaceae bacterium D16] gi|332516194|gb|EGJ45802.1| DNA mismatch repair protein MutS [Ruminococcaceae bacterium D16] Length = 866 Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust. Identities = 298/889 (33%), Positives = 477/889 (53%), Gaps = 47/889 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD--IPM 83 TPMM+QY+E+K NPDS++F+R+GDFYE+FFDDA L S+ L +TLT R ++ + PM Sbjct: 5 TPMMKQYLEMKDRNPDSILFFRLGDFYEMFFDDAKLVSKELDLTLTTRDRNKPPEERTPM 64 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVP H+ YI +LI G+++AICEQ E P AK LV R+++R+++PGT+ Sbjct: 65 CGVPYHSCESYIARLIAKGYKVAICEQTEDPATAK-----GLVDRDIIRIISPGTVISAS 119 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTG-----IFKISTSNHDRLISDIMRIDPREII 198 +L +N+L AV + + DISTG F D L +++ R P E + Sbjct: 120 MLEEGKNNFLSAVYADESGVGLCLCDISTGEVFATSFPAGPEAQDHLENELGRFHPTEAV 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVA---QPNVFFDHSISESRIADYYNITTVDTFGSFSQV 255 S+ + A + + + DH+ + + ++T + Sbjct: 180 LSQGAWTLAGLTDFLKDRLDCMCQHWEEEGFALDHA---REMVNKQFTAGLETLPAGDTA 236 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SL 314 A + Y+ TQ + I + +D AR LE+ TL G ++ SL Sbjct: 237 AVQATGGLLRYLYDTQKTDLGHIAAFSYYTTGQFMELDLTARQTLELTETLRGKEKKGSL 296 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D + T G RL + PL +I R ++ +++ I + L+ D+ Sbjct: 297 LWVMDKTRTPMGHRLIRGWMERPLLSPVQIARRQQAVGDLVEDIITREELTLTLREVTDL 356 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R + R+ G +D+ + G+ I L L L+ E+L LP+ L + Sbjct: 357 ERLIGRVVYGTAGGRDLTALATGLGKLPRIREL-LSPCSSALLQSLAEQLDDLPE-LREL 414 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L L D+ P R+G F+R+G +D R++ D ++A L+ + E+T IKN+K+ Sbjct: 415 LQRALVDEPPFSVREGKFIREGYSEEVDRLRNVMDHGADMLADLEARTKEQTGIKNMKVG 474 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+IEV S +++ + ++ +QT N R+ + EL DLE+ I +A + Sbjct: 475 YNKVFGYYIEVAKSQTNLVPEG------WVRKQTTVNSERYISQELKDLEHTILSAQDKV 528 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E + F L + + + ++ +A +D+ + A +A NYC P +DNS+ + Sbjct: 529 VALEYQLFCELKDTVCRHVTQVQKSAATVAQVDVLNSFATVAAAGNYCMPQVDNSSVLNI 588 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 +GRHP+VEK LK F+ ND + +D + ++TGPNM GKST++RQ ALI Sbjct: 589 VEGRHPVVEKMLKDSL---FVPNDTHMDDGDDLCA----IITGPNMAGKSTYMRQVALIT 641 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 +MAQMGS+VPA AHIG+VD++F+R+G++D+L++G+STFMVEM E A +L AT +S +I Sbjct: 642 LMAQMGSFVPAKSAHIGVVDRVFTRIGASDDLSAGQSTFMVEMTEVAQLLKNATRRSLLI 701 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQV 792 LDEIGRGT+T DG++IA + +EY + R C+ L ATH+HELT L + N + Sbjct: 702 LDEIGRGTSTYDGMAIARSVLEYCADKRRLGCKTLFATHYHELTVLEGEIPGVKNYNIAA 761 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 + +IFL K++ G AD SYGI+V +LAG+P+ VI RA +ILK E + Sbjct: 762 KKRKDQVIFLRKIVRGGADQSYGIEVAQLAGVPDRVIKRAREILKELEA--------GGV 813 Query: 853 YYPEIQTKESKNNLSKND---KLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P + +E +S D + ++K++ +++ +SP+ AL L +K Sbjct: 814 ERPVVSVREDSGQVSLGDLGGETVLKKLRMTDVNILSPIEALNLLNELK 862 >gi|75909393|ref|YP_323689.1| DNA mismatch repair protein MutS [Anabaena variabilis ATCC 29413] gi|123608965|sp|Q3M892|MUTS_ANAVT RecName: Full=DNA mismatch repair protein mutS gi|75703118|gb|ABA22794.1| DNA mismatch repair protein MutS [Anabaena variabilis ATCC 29413] Length = 854 Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust. Identities = 295/829 (35%), Positives = 452/829 (54%), Gaps = 33/829 (3%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLT-KRGKHLGKDIPMCGV 86 M + Y+E+K P +L+ YR+GDF+E FF DA+ +R L + LT K G +G+ + M GV Sbjct: 32 MYQHYVEVKDKYPHALLLYRVGDFFETFFQDAVTVARELELVLTSKHGGEVGR-VAMTGV 90 Query: 87 PVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLS 146 P H Y +L++ G+ + IC+Q+E EA LVRR V R++TPGTL E+ +L Sbjct: 91 PHHAWERYTTQLVEKGYAVVICDQVEDASEAV-----GLVRREVTRILTPGTLLEEGMLK 145 Query: 147 PTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD--RLISDIMRIDPREIIFSEKEL 204 + +NYL AV W +A+ DISTG F ++T + D RL ++MR+ P E++ Sbjct: 146 SSRNNYLAAVVITSNHWGLAYADISTGEF-LTTQDSDLERLTQELMRLQPSEVLVPTNAP 204 Query: 205 SHAEYKSLFETLGNVAVAQPNVF---------FDHSISESRIADYYNITTVDTFGS-FSQ 254 ET ++ P F F + + S + + + +++ G Sbjct: 205 DLGTLLRPGETSPHLPECLPPSFCYSLRSQQPFSQAEARSTLLQRFKVRSLEGLGCDHLP 264 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQS 313 + AA + Y++ TQ + ++ I L +D+ R NLEI +T+ G+ S Sbjct: 265 LAVRAAGGLLEYVEDTQKAGQVSLQRLRTYTITDYLIVDNQTRRNLEITQTVRDGTFHGS 324 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T G R + PL D I++R D+I + N L ++ +L+ D Sbjct: 325 LLWALDKTSTAMGSRALRRWLLQPLLDIKGISSRQDTIQELVTNTRLRQDLRHLLRQIYD 384 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R R G +D+ + D + + NL + P A++K+ + + L + Sbjct: 385 LERLTGRASSGTANARDLVALADSLSRLPELANLVIDAHSP--FLKALQKVPPILEELAQ 442 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + + L + P ++GG +R G + LDE ++ + + IA+L++ T I LK+ Sbjct: 443 KIHAHLVESPPLHLKEGGLIRPGVNPLLDERKATVEADHQWIANLEVDERARTGIPLLKV 502 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GY+I ++ + A + + +I +QT+ N R+ T EL + E RI A + Sbjct: 503 GFNETFGYYISISRAKADQVPAN------YIRKQTLKNEERYITPELKEREARILTARDD 556 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 +E E F L + EQ+E++ + S+ +A D+ LA LA Q YCRP + N Sbjct: 557 LHKLEYEVFVTLREEVGEQAEAIRHLSRAVAAADVLCGLAELAVYQGYCRPEMVNGREIA 616 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNS-GKLWLLTGPNMGGKSTFLRQNAL 672 + DGRHP+VE++L + F+ N L + + L +LTGPN GKS +LRQ L Sbjct: 617 IIDGRHPVVEQSL---PAGFFVPNSTQLGSNEETHQLPDLIILTGPNASGKSCYLRQVGL 673 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 I +MAQ+GS+VPA A +GI D++F+RVG+ D+LA+G+STFMVEM ETA+ILN AT++S Sbjct: 674 IQLMAQIGSFVPAKSARLGICDRIFTRVGAVDDLATGQSTFMVEMNETANILNHATSRSL 733 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 V+LDEIGRGTAT DGLSIAWA EY+ R R + ATH+HEL +L+ L N + V Sbjct: 734 VLLDEIGRGTATFDGLSIAWAVAEYIATEIRSRTIFATHYHELNELAGMLPNVANYQVTV 793 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 + + IIFLH+V PG AD SYGI+ G+LAGLP VI RA ++ EK Sbjct: 794 KELPDQIIFLHQVQPGGADKSYGIEAGRLAGLPTVVIQRAKQVMGQIEK 842 >gi|284054346|ref|ZP_06384556.1| DNA mismatch repair protein MutS [Arthrospira platensis str. Paraca] gi|291568349|dbj|BAI90621.1| DNA mismatch repair protein MutS [Arthrospira platensis NIES-39] Length = 883 Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust. Identities = 304/842 (36%), Positives = 469/842 (55%), Gaps = 47/842 (5%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPMCG 85 MM++YIE+K P +L+F+R+GDF+E FF DA+ S+ L + T + GK +G+ +PM G Sbjct: 28 MMQRYIEVKDQYPHALLFFRVGDFFECFFQDAITISQELELVQTTKSAGKEIGR-VPMTG 86 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 VP Y L++ G+ + IC+Q+E + + AK+R V+R + R++TPGTLT+DQ+ Sbjct: 87 VPFEHVYRYSNMLLEKGYPVVICDQVEDAAIAAKERRQ---VKREITRILTPGTLTDDQM 143 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTS-NHDRLISDIMRIDPREIIFSEKE 203 L +N+L AV W +A+ D+STG F + S N + L ++MR+ P EI+F Sbjct: 144 LRGRQNNFLAAVVIAGDHWGLAYADVSTGEFLATQSQNLEHLTQELMRLQPSEILFP--- 200 Query: 204 LSHAEYKSLFETLGNVAVAQPNVF---FDHSI----------SESRIADYYNITTVDTFG 250 +HA G + + P+ F +S+ + SRI + + + +++ G Sbjct: 201 -THAPDLGKMLRPGQKSESLPDCLPADFCYSLRSQIPFTLGEARSRILEEFKLRSLEGIG 259 Query: 251 SFS-QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SG 308 + + AA + Y+++TQ N + + L +D R NLEI +T+ G Sbjct: 260 CENLPLGVRAAGGLLEYLEETQKQNVVPLQQLHSYTLSDYLILDYQTRRNLEITKTIRDG 319 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKIL 368 + + SLL ID + T G R + PL I +R D+I I N L +Q++L Sbjct: 320 TLQGSLLWAIDKTSTAMGARALRRWLLQPLLSIKGICSRYDTIEELINNVELRQDLQQLL 379 Query: 369 KSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP 428 + D+ R R G KD+ + D + S + L K L+ A++ + L Sbjct: 380 RQIYDLERLTGRAANGSANAKDLVGLADSL-SKLPQLAQLSKGGKSPYLK-ALQNVPPLL 437 Query: 429 QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 + L K ++S + + P + ++GG ++ G D LD+ ++ + ++ IA+L+++ E T I Sbjct: 438 EELAKKINSYIVESPPLYLKEGGLIKPGVDPQLDQMQAGAAEDQQWIANLEIQERERTGI 497 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 LK+ N GY+I +T S K ++ D +I +QT++N R+ T EL + E RI Sbjct: 498 STLKVGFNKTFGYYISITRS------KSDQAPDDYIRKQTLTNEERYITPELKEREARIL 551 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 A +E E F L + E ++ + S+ IA ID+ LA +A Q YCRP I Sbjct: 552 TAKEDLNQLEYEIFARLRGEVGEHTDLIREISRAIAAIDVLCGLAEIAVYQGYCRPEIVG 611 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP---------NDKNSGKLWLLTGPN 659 + +GRHP+VEK+L + F+ N+ L + + L +LTGPN Sbjct: 612 GRELKILEGRHPVVEKSL---PTGFFVPNNAHLGSEEGGLQKQKLSPPSPPDLIILTGPN 668 Query: 660 MGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIE 719 GKS +LRQ LI +MAQ+GS+VPA+ A + I D++F+RVG+ D+LA+G+STFMVEM E Sbjct: 669 ASGKSCYLRQVGLIQLMAQIGSFVPATSARLSICDRIFTRVGAVDDLATGQSTFMVEMNE 728 Query: 720 TASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLS 779 TA+ILN AT +S V+LDEIGRGTAT DGLSIAW+ EYL T + R + ATH+HEL +L+ Sbjct: 729 TANILNHATPKSLVLLDEIGRGTATFDGLSIAWSVAEYLATTIKARTIFATHYHELNELA 788 Query: 780 KSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF 839 L N + V + + IIFLH+V PG AD SYGI+ G+LAGLP+ VI RA +++ Sbjct: 789 SILGNVANYQVTVKELPDKIIFLHQVQPGGADKSYGIEAGRLAGLPDVVIKRAKQVMRQI 848 Query: 840 EK 841 EK Sbjct: 849 EK 850 >gi|332305468|ref|YP_004433319.1| DNA mismatch repair protein MutS [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172797|gb|AEE22051.1| DNA mismatch repair protein MutS [Glaciecola agarilytica 4H-3-7+YE-5] Length = 887 Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust. Identities = 320/903 (35%), Positives = 486/903 (53%), Gaps = 60/903 (6%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 L+ TPMM+QY++IK+ +PD L+FYRMGDFYELFFDDA AS L I+LT RGK G I Sbjct: 15 LQQHTPMMQQYLKIKAEHPDILLFYRMGDFYELFFDDAKKASELLDISLTARGKSGGNAI 74 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PM GVP H +Y+ +L+K+G +AI EQ+ P +K V R V R+VTPGT+++ Sbjct: 75 PMAGVPYHAVENYLARLVKMGQSVAIVEQVGDPATSK-----GPVERKVQRIVTPGTVSD 129 Query: 142 DQLLSPTDSNYLMAV------ARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDP 194 + LL+ N L AV + + A +D+++G F + S + L +++ R +P Sbjct: 130 EALLNDKQDNILAAVFCPVQKSNQALVFGYATLDVTSGRFTLCELSGEEALAAELQRTNP 189 Query: 195 REIIFSEK-ELSHA--EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG- 250 E+++ + SH + K L +P FD + S++ + + FG Sbjct: 190 VELLYPDDFAFSHLIDQRKGLRR--------RPQWEFDLQTATSQLTSQFGTNELSGFGV 241 Query: 251 SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR 310 Q+ AA + YIK TQ P I E T+ +D+A R NLE+ LSG Sbjct: 242 QNHQIGICAAGCVMQYIKDTQRSALPHIDRIVLEAHNDTVVMDAATRRNLELTLNLSGGT 301 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 E +L +D + T G RL I PLTD T + R +I I++P +Q LK Sbjct: 302 ENTLASILDKTSTPMGSRLLQRWIHRPLTDVTVLKMRQRNIQGLIESPY--PQLQDTLKK 359 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF------LKNDLPE-ELRGAVEK 423 D+ R L+RL + P+D A +R +I + L ND + L ++ Sbjct: 360 MGDMQRVLARLALRSARPRDFARLRQAFALLPDIQHYLEHEVSHLDNDSQQCGLSQLAQQ 419 Query: 424 LKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 + + P L + D P RDGG +++G + LD R+L + + L+ + Sbjct: 420 IFQYP-DFADLLERAVIDTPPVLIRDGGVIKEGYNEELDHLRALSKGATDYLEELEQREK 478 Query: 484 EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDL 543 E T I +LK+ +N GYFIEV+ S + ++ + ++ RQT+ N R+ EL + Sbjct: 479 ERTGIASLKVGYNRVHGYFIEVSRSQSDLVPVE------YVRRQTLKNNERYIIPELKEH 532 Query: 544 ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCR 603 E+ + ++ + +L +E + ++ L + ++ Q L ++ +A +D+ LA A+ +Y Sbjct: 533 EDNVLSSQSRSLALEKKLYDELFDILLPQLTQLMQSADALAELDVLANLAERAESLDYHC 592 Query: 604 PIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 P + + GRHP+VE Q S PFIAN +++ PN + + ++TGPNMGGK Sbjct: 593 PDLCPQSGIHFSQGRHPVVE----QVSDAPFIANPIEVN-PNRR----MLVITGPNMGGK 643 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 ST++RQ ALIV+MA +GSY+PA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+I Sbjct: 644 STYMRQTALIVLMAYIGSYIPAQDAKIGPIDRIFTRIGASDDLASGRSTFMVEMTETANI 703 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLK 783 LN AT S V++DEIGRGT+T DGLS+AWA EYL + L ATH+ ELT L+++L Sbjct: 704 LNNATANSLVLMDEIGRGTSTYDGLSLAWACAEYLATKLQSFTLFATHYFELTGLAEALP 763 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY 843 N L + + I F+H V G A+ SYG+QV +LAG+P V+ A L E Sbjct: 764 ELANVHLDAVEHGDTIRFMHAVQDGAANKSYGLQVAQLAGVPKQVVQAAKRKLHELETGA 823 Query: 844 HHNQKDMRLYYPEIQTK--------ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 R PE Q + E++ +L E + + D+++P AL+ LY Sbjct: 824 SVKTSVAR---PEAQPQAIKAEEKVETQLDLLGQPSEAEELLYSIQPDDLTPKQALEYLY 880 Query: 896 AVK 898 +K Sbjct: 881 QLK 883 >gi|237741668|ref|ZP_04572149.1| DNA mismatch repair protein mutS [Fusobacterium sp. 4_1_13] gi|294785721|ref|ZP_06751009.1| DNA mismatch repair protein MutS [Fusobacterium sp. 3_1_27] gi|229429316|gb|EEO39528.1| DNA mismatch repair protein mutS [Fusobacterium sp. 4_1_13] gi|294487435|gb|EFG34797.1| DNA mismatch repair protein MutS [Fusobacterium sp. 3_1_27] Length = 896 Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust. Identities = 313/892 (35%), Positives = 518/892 (58%), Gaps = 39/892 (4%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TP+M+QY +IK + ++ +R+GDFYE+FF+DA +AS+ LG+TLTKR K G+D+ Sbjct: 20 MSADTPLMQQYKKIKKDYQNEILMFRLGDFYEMFFEDAKIASKELGLTLTKRNKEKGQDV 79 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 P+ GVP H+ YI KL++ G+ IAIC+Q+E P A +V+R V R++TPGT+ + Sbjct: 80 PLAGVPYHSVASYIAKLVEKGYSIAICDQVEDPKSAT-----GIVKREVTRVITPGTIID 134 Query: 142 DQLLSPTDSNYLMAVARIRTE--WAIAWIDISTG---IFKISTSNH-DRLISDIMRIDPR 195 L ++NY+ V TE AIA+ DI+TG +F+I N ++ ++++ +I Sbjct: 135 VDFLDKNNNNYIACVKINTTESIAAIAYADITTGEFSVFEIKGKNFFEKALAEMNKIQAS 194 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ- 254 EI+ EK +++EY +F+ + + + + +E+ I Y+NI +++ F S+ Sbjct: 195 EILLDEK--TYSEYIEIFKEKISFSGVKFTEVSNVKKAENFITSYFNIISIEVFSLKSKD 252 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSL 314 + + +A + YI + Q N+ E +I + + ++ + ++NL ++ + +L Sbjct: 253 LAISTSANLLHYIDELQKGNELPFSKIEYRNIDNIMELNISTQNNLNLVPKRNEEARGTL 312 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D +T G R + I +P D KI R +++F + +L +++ LK DV Sbjct: 313 LGVLDNCVTSVGSRELKKIIKNPFLDIEKIKQRQFYVDYFYNDVLLRENVREHLKDIYDV 372 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R ++ G KD+ ++D IR + L ++ +E++ ++ K + Sbjct: 373 ERIAGKIIYGTENGKDLLSLKDSIRKSLETYRLLKEH---QEIKNLLDIDVKTLLDIYNK 429 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + ++S + P R+GG ++DG + LDE R + K I ++ + E T IK LKIK Sbjct: 430 IELIISVEAPFSVREGGIIKDGYNLELDELRKISKLGKDFILEIEQRERERTGIKGLKIK 489 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GYFIEVT ++ ++ +D +I +QT+ N R+ +L + E ++ A + Sbjct: 490 YNKVFGYFIEVTKANEHLVPED------YIRKQTLVNSERYIVPDLKEYEEKVITAKSKI 543 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 +E E F+ L++ I E +SL + IA +DI + +A + +Y +P I + Sbjct: 544 EALEYELFKQLTSEIKEHIDSLYKLANRIANLDIVSNFSHIATKNSYVKPEISEEDILEI 603 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 K GRHPIVE + +S ++ ND L +DKN+ L +LTGPNM GKST+++Q AL + Sbjct: 604 KGGRHPIVETLI---ASGTYVKNDIVL---DDKNN--LIILTGPNMSGKSTYMKQVALNI 655 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMA +GSYV A YA I IVDK+F+RVG++DNL +G+STFM+EM E ASILN AT +SF++ Sbjct: 656 IMAHIGSYVAADYAKIPIVDKIFTRVGASDNLLTGQSTFMLEMTEVASILNSATKKSFIV 715 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDEIGRGT+T DG+SIA A EY+H + + ATH+HELT+L K L+R N ++V + Sbjct: 716 LDEIGRGTSTYDGISIATAITEYIHNVIGAKTIFATHYHELTELEKELERAINFRVEVKE 775 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE---KLYHHNQK--D 849 + ++FL +++ G AD SYGI+V +L+G+P V++R+ ILK E L + K Sbjct: 776 DGKNVVFLREIVKGGADKSYGIEVARLSGVPKEVLNRSRKILKKLETRKNLIENKIKAEQ 835 Query: 850 MRLY---YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 M L+ + E +E LS+N+ +E +K ++L+ +SPL +L L +K Sbjct: 836 MMLFGNGFEEDFEEEETEILSENENKVLELLKNMDLNSLSPLESLLKLNELK 887 >gi|22299783|ref|NP_683030.1| DNA mismatch repair protein [Thermosynechococcus elongatus BP-1] gi|44888209|sp|Q8DGS4|MUTS_THEEB RecName: Full=DNA mismatch repair protein mutS gi|22295967|dbj|BAC09792.1| DNA mismatch repair protein [Thermosynechococcus elongatus BP-1] Length = 874 Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust. Identities = 300/834 (35%), Positives = 457/834 (54%), Gaps = 44/834 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TPM++ Y E+K P +L+ YR+GDFYE FF DA +R L + LT + GK +G+ + M Sbjct: 38 TPMLQHYAELKDAYPHALLLYRVGDFYETFFQDACTVARELELVLTGKEGGKEVGR-VAM 96 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G+P H Y + LI+ G+ IAIC+Q+E P +A+ LV+R V ++ TPGT+ + + Sbjct: 97 AGIPHHALERYCRTLIEKGYAIAICDQVEDPAQAQ-----GLVKREVTQVFTPGTVLDTE 151 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREIIFSE 201 LL P +N+L AV W +A+ D+STG F +T DR L++++ R+ P EI+ Sbjct: 152 LLQPRRNNFLAAVVLSGNHWGLAYADVSTGEF-CTTQGSDRADLVAELNRLQPAEILLPT 210 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVF---------FDHSISESRIADYYNITTVDTFGS- 251 + E + P + F + + R+ + + +++ FG Sbjct: 211 EAPDINRVLRPGEGKDQLPPELPPQWCYTLRSPEDFQAAAARQRLCQRFQVKSLEGFGCE 270 Query: 252 FSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSR 310 + AA ++Y+ +T + +Q LF+D R NLE+ +T+ GS Sbjct: 271 HLPLALRAAGGLVAYLDETHRQQPVPLQNLSTYSLQQYLFLDPQTRRNLELTQTVRDGSF 330 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 + SLL ID + T GGRL + PL D +I R D+I + N L + + L+ Sbjct: 331 QGSLLWAIDRTATAMGGRLLRRWLLQPLLDIEEITARQDAIAELMANSSLRQSLHRHLQE 390 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS 430 D+ R R G +D+A +RD R+ +++ + P ++ L +LP Sbjct: 391 IYDLERLAGRAGSGTANARDLAALRDSFRTLVSLAAVVANTSSP-----YLQALAQLPPV 445 Query: 431 LEK---TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 +E+ TLS+ L D PT +GG LR GA LD+ R +Q ++ I +L+ + + T Sbjct: 446 IEQLADTLSAALVDQPPTSLSEGGILRPGAYPELDQQRQQIEQDQQWILNLEAQERQRTG 505 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 I LK+ + GY++ V+ + + + D +I +QT++N RF T EL + E R+ Sbjct: 506 ISTLKVGYTKVFGYYLSVSRAKLN------QVPDDYIRKQTLTNEERFITAELKEREARL 559 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 A + +E + F L + Q+ ++ + +A +D + LA +A Q YCRP + Sbjct: 560 LAAQSHLFELEYQYFVQLREQVAAQASTIREIAAAVAAVDALLGLAEVALYQGYCRPQLT 619 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 ++ GRHP+VE+TL + F+ ND L D L +LTGPN GKS +L Sbjct: 620 RDRQLCIRGGRHPVVEQTLP---AGFFVPNDTQLGTGAD-----LMVLTGPNASGKSCYL 671 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ LI ++AQMGSYVPA+ A +GI D++F+RVG+ D+LA+G+STFMVEM ETA+ILN A Sbjct: 672 RQVGLIQLLAQMGSYVPATSATLGICDRIFTRVGAVDDLATGQSTFMVEMNETANILNHA 731 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 ++S V+LDEIGRGTAT DGL+IAW+ EYL + R + ATH+HEL L+ L N Sbjct: 732 GDRSLVLLDEIGRGTATFDGLAIAWSVAEYLATILKSRTIFATHYHELNQLATLLPNVAN 791 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 + V + IIFLH+V PG AD SYGI+ G+LAGLP VI RA +++ EK Sbjct: 792 YQVVVKELPNEIIFLHQVKPGGADRSYGIEAGRLAGLPAVVIQRAREVMCQIEK 845 >gi|317478037|ref|ZP_07937219.1| DNA mismatch repair protein MutS [Bacteroides sp. 4_1_36] gi|316905826|gb|EFV27598.1| DNA mismatch repair protein MutS [Bacteroides sp. 4_1_36] Length = 871 Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust. Identities = 300/886 (33%), Positives = 489/886 (55%), Gaps = 41/886 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+Q++++K+ +PD+++ +R GDFYE + DA++AS LGITLTKR GK I M G Sbjct: 8 TPMMKQFLDLKAKHPDAVMLFRCGDFYETYSTDAVVASEILGITLTKRANGKGKTIEMAG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KLI+ G R+AIC+Q+E P KK LV+R + LVTPG D +L Sbjct: 68 FPHHALDTYLPKLIRAGKRVAICDQLEDPKLTKK-----LVKRGITELVTPGVSINDNVL 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF--SEKE 203 + ++N+L AV + +A++DISTG F + D + + P+E++F ++ Sbjct: 123 NYRENNFLAAVHFGKGACGVAFLDISTGEFLTAEGPFDYVDKLLNNFAPKEVLFERGKRL 182 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + + S F T + F + + ++ ++ + + FG A+ A Sbjct: 183 MFEGNFGSKFFTF-----ELDDWVFTETSAREKLLKHFEVKNLKGFGVEHLKNGIIASGA 237 Query: 264 I-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 I Y+ TQ + R + + +D +LE++ +++ SLL ID +I Sbjct: 238 ILQYLIMTQHTQIGHVTSLARIEEDKYVRLDKFTVRSLELMGSMNDGG-SSLLNVIDKTI 296 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 + G RL + PL D IN RL+ + +F + P I++ L D+ R +S++ Sbjct: 297 SPMGARLLKRWLVFPLKDVQPINERLNVVEYFFRQPDFKELIEEQLHLIGDLERIISKVA 356 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 +GR P+++ ++ +++ I + D L E+L + QS+ + + +D Sbjct: 357 VGRVSPREVVALKVALQAIEPIKAACMDAD-NASLNHIGEQLN-ICQSIRDRIDREIDND 414 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P GG ++ G A LDE R + K + +Q + +E T+I +LKI +NN GY+ Sbjct: 415 PPLLINKGGVIKSGVSAELDELRQIAYSGKDYLLQIQQRESELTEIPSLKIGYNNVFGYY 474 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IEV ++ + + +I +QT++N R+ T EL + E +I A + L++E + + Sbjct: 475 IEVRNTHKDKVPAE------WIRKQTLANAERYITQELKEYEEKILGAEDKILVLETQLY 528 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 L ++ E ++ + IA +D ++ A A+E NY RP+I + + GRHP++ Sbjct: 529 AELVQSLSEFIPAIQINANQIARLDCLLSFATAARENNYIRPVIADDDVLEICQGRHPVI 588 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 EK L + +IAND L D + ++ ++TGPNM GKS LRQ ALI ++AQ+GS+ Sbjct: 589 EKQLP--IGEKYIANDVML----DSQTQQIIIITGPNMAGKSALLRQTALITLLAQIGSF 642 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA AHIG+VDK+F+RVG++DN++ G STFMVEM E A ILN + +S V+ DE+GRGT Sbjct: 643 VPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNLSPRSLVLFDELGRGT 702 Query: 743 ATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 +T DG+SIAWA +E++HE + R L ATH+HEL ++ KS KR N + V + + +I Sbjct: 703 STYDGISIAWAIVEHIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEIDNKVI 762 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 FL K+ G ++HS+GI V K+AG+P +++ RA DILK E N++ P ++ Sbjct: 763 FLRKLERGGSEHSFGIHVAKMAGMPKSIVKRANDILKQLET---DNRQQGISSKPMVEVG 819 Query: 861 ESKNNLSKNDKLFVEKIKC------LNLD--EMSPLTALKTLYAVK 898 E++ + + + + C LNLD ++PL AL L +K Sbjct: 820 ETRGGMQLSFFQLDDPVLCQIRDEILNLDVNNLTPLEALNKLNDIK 865 >gi|299137645|ref|ZP_07030826.1| DNA mismatch repair protein MutS [Acidobacterium sp. MP5ACTX8] gi|298600286|gb|EFI56443.1| DNA mismatch repair protein MutS [Acidobacterium sp. MP5ACTX8] Length = 915 Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust. Identities = 320/916 (34%), Positives = 501/916 (54%), Gaps = 72/916 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+MRQ+ K +PD+L+F+RMGDFYELF+DDA++A+R L +TLT R K K +PMCG Sbjct: 14 TPVMRQFRTAKDAHPDALLFFRMGDFYELFYDDAIVAARELQLTLTARDKS--KSVPMCG 71 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A Y+Q+L+++G+R+A+CEQ+E P + K++VRR V R++TPGT D L Sbjct: 72 VPYHSAGPYLQRLLRLGYRVALCEQMEDP-----KATKTIVRREVTRVLTPGTAL-DPSL 125 Query: 146 SPTDSNYLMAVARIRTEWAIAW----IDISTGIFK---ISTSNHDRL-ISDIMRIDPREI 197 + ++S +L +VA + A ID+STG F+ + +N L + ++ R+ P E+ Sbjct: 126 AASESQWLASVAGVGAAAAACVGVAAIDLSTGEFRATEFTGANAWALALDELARLRPAEL 185 Query: 198 IFSE-------KELSHAEYKSLFET----------------LGNVAVAQPNVFFDHSISE 234 IFS K SL E+ +G F+ + Sbjct: 186 IFSRGPGGFGAKTTQSVRQTSLRESDAPDETETKEESAPADIGGARTEVEEWVFNKEYAV 245 Query: 235 SRIADYYNITTVDTFGSFSQVEKTAAAAAI-SYIKKTQ---MVNKPTIGYPEREDIQSTL 290 + + ++D G + AA AI Y++ T+ + + T+ Y E+ D L Sbjct: 246 PLLRQQLRVHSLDGLGLGNHAAAAVAAGAIVHYLRTTKQGALEHLDTLRYYEKRDC---L 302 Query: 291 FIDSAARSNLEILRTLSGSR--EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRL 348 +D+ + NLE++ L S + +L T+D T G RL ++ P+ +IN RL Sbjct: 303 ELDAVSVRNLELVDPLFSSEGPKTTLFYTLDACCTPMGKRLLRAQLLRPMQSLAEINERL 362 Query: 349 DSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIR------DGIRSGI 402 ++ + +++ + D+ R L R+ + P+++ + G+R+ + Sbjct: 363 AAVGEAAGDIRRREGLRRAMDGLLDLERLLGRVSLDSAGPREVVGLGATLARLPGLRAAV 422 Query: 403 NILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLD 462 L + L ++ L L + + +TL ++ P DGG +R+G DA LD Sbjct: 423 AELAATSPSGRWAFLATRLDTLDDLNEMIARTLV----EEPPISLSDGGAIREGVDAELD 478 Query: 463 ETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDR 522 E R L ++ IA+++ + T I +LK++ N+ GY++EVT ++A + D E K Sbjct: 479 ELRGLSTSGRQRIAAIEERERARTGIGSLKVRFNSVFGYYLEVTKANAKSVPADYERK-- 536 Query: 523 FIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQV 582 QT+ N RFTT EL +LE +I A + IE F L ++ + + ++ Sbjct: 537 ----QTLVNAERFTTPELKELETKILTAQERSGEIERRIFSELRRQLLTNAVRVRETARR 592 Query: 583 IAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDL- 641 +A ID+ A LA + + +P +D S RHP+VE+ L++ FI N L Sbjct: 593 VAEIDLLGCFAHLAAMRGWVKPQVDASEVLEFVSARHPVVEQRLEESGGGRFIPNSLHLE 652 Query: 642 SCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVG 701 + + N L L+TGPNMGGKST+LRQ AL+VIMAQ G +VPA +G+VD++++R+G Sbjct: 653 AAGGEANGPSLLLITGPNMGGKSTYLRQAALLVIMAQCGCFVPAERMRLGLVDRVYTRIG 712 Query: 702 SADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHET 761 ++DN+A GRSTFMVEM ETA+ILN AT +S V+LDE+GRGTAT DGLS+AWAT+E+LH Sbjct: 713 ASDNVARGRSTFMVEMTETAAILNTATARSLVLLDEMGRGTATYDGLSLAWATVEHLHND 772 Query: 762 NRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKL 821 R L ATH+HELT L+ L R N + V +S GI+FLH V G A+ SYGI+V +L Sbjct: 773 IGARTLFATHYHELTLLADRLARLRNVRVTVRESGGGIVFLHTVEAGAANKSYGIEVARL 832 Query: 822 AGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKL---FVEKIK 878 AGLP VI RA +L+ E+ + +R P + +E+ ++ L V++I+ Sbjct: 833 AGLPGVVIERARAVLRVHER---AESQQIREAAP-VAEREASMQMTMFTPLSQRIVDRIE 888 Query: 879 CLNLDEMSPLTALKTL 894 ++D ++P AL+ L Sbjct: 889 QTDVDGLTPREALQLL 904 >gi|119510583|ref|ZP_01629713.1| DNA mismatch repair protein [Nodularia spumigena CCY9414] gi|119464744|gb|EAW45651.1| DNA mismatch repair protein [Nodularia spumigena CCY9414] Length = 863 Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust. Identities = 296/839 (35%), Positives = 453/839 (53%), Gaps = 46/839 (5%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK--DIPMCG 85 M + Y+E+K +P +L+ YR+GDF+E FF DA+ SR L + LT KH G+ + M G Sbjct: 34 MYQHYVEVKDKHPHALLLYRVGDFFETFFQDAVTVSRELELVLTS--KHAGEVGRVAMTG 91 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H Y +L++ G+ + IC+Q+E EA LV+R V R++TPGTL E+ +L Sbjct: 92 VPHHAWERYTTQLVEKGYAVVICDQVEDASEAV-----GLVKREVTRILTPGTLLEEGML 146 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIF-KISTSNHDRLISDIMRIDPREIIFSEKEL 204 + +NY+ AV W +A+ DISTG F S+ + L ++MR+ P E++ Sbjct: 147 KSSRNNYIAAVVIAGNHWGLAYADISTGEFLTTQGSDLEHLTQELMRLQPSEVVVPTNAP 206 Query: 205 SHAEYKSLFETLGNVAVAQPNVF---------FDHSISESRIADYYNITTVDTFGS-FSQ 254 E+ ++ P F F + ++ + + + +++ G Sbjct: 207 DLGSLLRPGESSPHLPPCLPQSFCYSLRSQVPFSQGEARPKLLEKFKVRSLEGLGCDHLP 266 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR-EQS 313 + AA + Y++ Q VN + I L +D+ R NLEI +T+ S S Sbjct: 267 LAVRAAGGLLEYVEDMQRVNPVVLQKLRTYTITDYLIVDNQTRRNLEITQTVRDSTFHGS 326 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D S T GGR + PL D I R ++I ++N L ++++L+ D Sbjct: 327 LLWALDRSSTAMGGRALRRWLLQPLIDLKGIGARQNTIQELMENTPLRQDLRQLLRQIYD 386 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE- 432 + R R G KD+ + D + + +L + P ++ L+++P L Sbjct: 387 LERLTGRAASGTANAKDLVALADSLSRLPQLSHLVIDARSP-----FLKALQRVPAELSE 441 Query: 433 --KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 + L + L + P ++GG +R G + LDE ++ + ++ IA+L++ +T I N Sbjct: 442 LAQKLHAHLVESPPIHIKEGGLIRPGMNPMLDERKATVESDQQWIANLEVDERAKTGIPN 501 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ N GY+I ++ S K + D +I +QT++N R+ T EL + E RI A Sbjct: 502 LKVGFNKTFGYYISISRS------KSDQVPDNYIRKQTLTNEERYITPELKEREARILTA 555 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 + +E E F L + +Q+E + N S+ +A D+ LA LA +Q YCRP + Sbjct: 556 RDDLNQLEYEIFVELREEVGQQAEIIRNTSRAVAAADVLCGLAELAVQQGYCRPQMVEGR 615 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGK--------LWLLTGPNMGG 662 ++ DGRHP+VE++L + F+ N L + G L +LTGPN G Sbjct: 616 EIMIVDGRHPVVEQSL---PAGFFVPNSTQLGREERNHRGAEGAEERPDLVILTGPNASG 672 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KS +LRQ LI +MAQ+GS+VPA +A +G+ D++F+RVG+ D+LA+G+STFMVEM ETA+ Sbjct: 673 KSCYLRQVGLIQLMAQIGSFVPARFAKLGVCDRIFTRVGAVDDLATGQSTFMVEMNETAN 732 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 ILN AT +S V+LDEIGRGTAT DGLSIAWA EY+ R R + ATH+HEL +LS L Sbjct: 733 ILNHATAKSLVLLDEIGRGTATFDGLSIAWAVAEYIAVDIRARTIFATHYHELNELSSIL 792 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 N + V + + IIFLH+V PG AD SYGI+ G+LAGLP+ VI RA ++ EK Sbjct: 793 PNVANYQVTVKELPDRIIFLHQVQPGGADKSYGIEAGRLAGLPDVVIQRAKQVMGQIEK 851 >gi|253687360|ref|YP_003016550.1| DNA mismatch repair protein MutS [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259511172|sp|C6DAK6|MUTS_PECCP RecName: Full=DNA mismatch repair protein mutS gi|251753938|gb|ACT12014.1| DNA mismatch repair protein MutS [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 854 Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust. Identities = 304/885 (34%), Positives = 483/885 (54%), Gaps = 44/885 (4%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 +++ + TPMM+QY +K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G Sbjct: 6 DKDFTAHTPMMQQYFRLKAEHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAG 65 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM GVP H +Y+ +L+++G +AICEQI P +K V R VVR+VTPGT Sbjct: 66 EPIPMAGVPHHAVENYLARLVQMGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGT 120 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E+ Sbjct: 121 ISDEALLQEKQDNLLAAIWQDSRGFGYATLDISSGRFRVSEPTDRETMAAELQRTNPAEL 180 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVE 256 ++ E E L E + +P F+ + ++ + + FG +++ Sbjct: 181 LYPES----FESMDLIENRHGLR-RRPLWEFEPDTARQQLNLQFGTRDLTGFGVEQAKLA 235 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 AA + Y K TQ + P I E Q + +D+A R NLE+ + LSG E +L Sbjct: 236 LRAAGCLLQYAKDTQRTSLPHIRGITMERQQDGIIMDAATRRNLELTQNLSGGVENTLAA 295 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINP-IQKILKSSPDVP 375 +D ++T G R+ I P D + R +I+ +Q+ I P +Q L+ D+ Sbjct: 296 VLDCTVTAMGSRMLKRWIHMPSRDIDALQQRQQAISA-LQD---ITPDLQPYLRQVGDLE 351 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R L+RL + P+D+A +R + +I D+ + +R V + + + L L Sbjct: 352 RILARLALRTARPRDLARMRHAFQQFPDIREQLAPLDI-DSVRRLVSLIGQFDE-LRDLL 409 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + + P RDGG + G +A LDE R+L D + + L+++ E+ + LK+ Sbjct: 410 ERAVIEAPPVLVRDGGVIAPGYNAELDEWRALADGASDYLDRLEIREREKLGLDTLKVGF 469 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+I+V+ + ++ ++ RQT+ N R+ EL + E+++ + AL Sbjct: 470 NGVHGYYIQVSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSKGKAL 523 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E ++ L + ++ L ++ +A +D+ LA A NY P + + + Sbjct: 524 ALEKALYDELFDLLLPHLAELQQSAAALAELDVLTNLAERADTLNYVCPTLSDKPGIKIT 583 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ L++ PFI+N LS ++ ++TGPNMGGKST++RQ ALIV+ Sbjct: 584 GGRHPVVEQVLRE----PFISNPLSLSPQR-----RMLIITGPNMGGKSTYMRQAALIVL 634 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MA +G +VPA A IG VD++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V++ Sbjct: 635 MAHIGCFVPADQAVIGPVDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVLM 694 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 695 DEIGRGTSTYDGLSLAWACAENLANRIKAMTLFATHYFELTTLPEKMEGVVNVHLDAREH 754 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 + I F+H V G A SYG+ V LAG+P VI RA LK E L ++ Sbjct: 755 GDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLKELEMLSNNASSS------ 808 Query: 856 EIQTKESKNNLSKNDK--LFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ L ND+ +E ++ ++ D ++P AL LY +K Sbjct: 809 --HIDGAQLALLGNDEPSPAIEALEAIDPDALTPRQALDWLYQLK 851 >gi|218247520|ref|YP_002372891.1| DNA mismatch repair protein MutS [Cyanothece sp. PCC 8801] gi|218167998|gb|ACK66735.1| DNA mismatch repair protein MutS [Cyanothece sp. PCC 8801] Length = 888 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 295/834 (35%), Positives = 462/834 (55%), Gaps = 36/834 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TPM + Y+ +K P++L+ YR+GDF+E FF DA+ S+ L + LT + GK +G+ + M Sbjct: 33 TPMYQHYVMVKEQYPNALLLYRVGDFFECFFQDAVTISQELELVLTSKEGGKEIGR-VAM 91 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H + Y + L++ G+ +AIC+Q+E EA +G +V R + +L+TPGTLT++ Sbjct: 92 TGVPHHALDRYSRLLVEKGYAVAICDQVEDSAEAAAQGR--IVERKITKLLTPGTLTDEG 149 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD--RLISDIMRIDPREIIFSE 201 +L +N+L A+ W +A+ DISTG F +T + D L +++R+ P EI+ Sbjct: 150 MLPAKRNNFLAAIVIAGNHWGLAYADISTGEF-FTTQSQDIANLNLELLRLQPSEILIPT 208 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVF---------FDHSISESRIADYYNITTVDTFGS- 251 E + P+ F F + ++ R+ +NI +++ G Sbjct: 209 NAPDINSLLRPGEKSEYLVDGLPDCFCYSLRSQTHFSLNEAKPRLLITFNIRSLEGMGCE 268 Query: 252 FSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSR 310 + AA + YI+ TQ ++ + + L +D R NLEI +T+ G+ Sbjct: 269 HLPLAIRAAGGLLQYIEDTQKAHQVPLQPLRTYNQVDFLILDHQTRRNLEITQTVRDGTF 328 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 SLL ID + T GGR + PL I R ++I ++NP L ++++L+S Sbjct: 329 YGSLLWAIDRTCTAMGGRALRRWVLEPLLTIKGIEARQNTIQELVENPSLRQDLRQLLRS 388 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS 430 D+ R R+ G +D+ + + + ++ L + P ++ L+K+P Sbjct: 389 IYDLERITGRVGSGTANARDLLSLAESLVRLTDLAELAHQGTSP-----YLKALQKIPPE 443 Query: 431 LE---KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 LE K + L + P +DGG +RDG + LD R D ++ +A+L+L ++T Sbjct: 444 LEQLGKYVIDHLVESPPLHLKDGGVIRDGINTDLDAMRQRLDDDRQWLANLELTERQKTG 503 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 + NLK+ +N GY+I + S A + K+ ++ +QT++N R+ T EL + E RI Sbjct: 504 VSNLKVGYNKTFGYYISLPRSKAELAPKN------YVRKQTLTNEERYITPELKERETRI 557 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 A + +E E F L + + E+ + + + ++ +A ID+ LA +A Q YCRP I Sbjct: 558 LTAQDDLNQLEYEIFTQLRSKVAEKGQEIRSIAKAVAAIDVLAGLAEVAVYQGYCRPEIV 617 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 + +GRHP+VE++L ++ F+ N + N L +LTGPN GKS +L Sbjct: 618 EGRAIEITEGRHPVVEQSL---AAGLFVPNSTKMGNTEANNYPDLIILTGPNASGKSCYL 674 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ LI +MAQ GS+VPA A +GI D++F+RVG+ D+LA+G+STFMVEM ETA+ILN Sbjct: 675 RQVGLIQLMAQTGSFVPAKSAKLGISDRIFTRVGAVDDLATGQSTFMVEMNETANILNHG 734 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 TN+S ++LDEIGRGTAT DGLSIAWA EYL + R + ATH+HEL +L+ L N Sbjct: 735 TNKSLILLDEIGRGTATFDGLSIAWAVAEYLATEVKGRTIFATHYHELNELASILSNVAN 794 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 + V + IIFLH+V PG AD SYGI+ G+LAGLP++VI RA ++ EK Sbjct: 795 YQVTVQELPNEIIFLHQVRPGGADKSYGIEAGRLAGLPSSVIKRAKQVMSQIEK 848 >gi|167903389|ref|ZP_02490594.1| DNA mismatch repair protein [Burkholderia pseudomallei NCTC 13177] Length = 843 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 293/823 (35%), Positives = 436/823 (52%), Gaps = 36/823 (4%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY+ IKS +PD+LVFYRMGDFYELFF+DA A+R L +TLT+RG G I M GVP Sbjct: 1 MMQQYLRIKSEHPDTLVFYRMGDFYELFFEDAEKAARLLDLTLTQRGASAGTPIKMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H Y+ KL+K G AICEQI P +K V R VVR+VTPGTLT+ LLS Sbjct: 61 HHAVEQYLAKLVKFGESAAICEQIGDPAT-----SKGPVERKVVRVVTPGTLTDAALLSD 115 Query: 148 TDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 +L+A+ + + +AW+++++G +++ D+L + + RI P EI+ ++ Sbjct: 116 KSDVFLLALCVGHNKRGVASNIGLAWLNLASGALRLAELAPDQLGAALERIRPAEILAAD 175 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 + +S+ +G + P FD + R+ D + ++D FG+ + AA Sbjct: 176 GTI-----ESVPAGMGAITRV-PAWHFDIASGTQRLCDQLEVASLDGFGAQALTSANGAA 229 Query: 262 AAIS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 A+ Y TQ + + E+ + +D + R NLE+ TL G+ +L +D Sbjct: 230 GALLIYAAATQGQQLRHVRSLKVENESEYIGLDPSTRRNLELTETLRGTESPTLYSLLDT 289 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP--ILINPIQKILKSSPDVPRSL 378 T G RL + P S R +I + P ++ ++ L+ DV R Sbjct: 290 CCTAMGSRLLRHWLHHPPRASVAAQARHQAIGALLDAPPNAGLDSLRSALRQIADVERIT 349 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 RL + P+D++ +RD + + + G +E + P L+ Sbjct: 350 GRLALLSARPRDLSSLRDTFAALPALRERVAEIASNAAALGRLEAALEPPPGCLDLLTRA 409 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 ++ + RDGG + G DA LDE R + + + + L+ + T I NL++++N Sbjct: 410 IAAEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLETRERARTGISNLRVEYNKV 469 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 G++IEVT + D + RQT+ N R+ T EL E++ +A AL E Sbjct: 470 HGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTFEDKALSAQERALARE 523 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 ++ + A++ E + +A +D+ A A A+ ++ P + + GR Sbjct: 524 RALYDGVLQALLPHIEGCQRVASGLAELDLLAAFAERARTLDWVAPEFTDEIGIEIDQGR 583 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE ++Q FIANDC L+ KL L+TGPNMGGKSTF+RQ ALI +MA Sbjct: 584 HPVVEAQVEQ-----FIANDCALNPER-----KLLLITGPNMGGKSTFMRQTALIALMAY 633 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+ILN AT S V++DEI Sbjct: 634 VGSYVPAKAARFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILNDATPHSLVLMDEI 693 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGL++AWA +L NRC L ATH+ ELT L + N L + G Sbjct: 694 GRGTSTFDGLALAWAIARHLLSHNRCYTLFATHYFELTQLPAEFPQAANVHLSAVEHGHG 753 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 I+FLH V G A+ SYG+QV +LAG+P VI A L E+ Sbjct: 754 IVFLHAVEEGPANQSYGLQVAQLAGVPAPVIRAARKHLAHLEQ 796 >gi|110642871|ref|YP_670601.1| DNA mismatch repair protein MutS [Escherichia coli 536] gi|191171138|ref|ZP_03032688.1| DNA mismatch repair protein MutS [Escherichia coli F11] gi|300976220|ref|ZP_07173317.1| DNA mismatch repair protein MutS [Escherichia coli MS 200-1] gi|123147783|sp|Q0TEC9|MUTS_ECOL5 RecName: Full=DNA mismatch repair protein mutS gi|110344463|gb|ABG70700.1| DNA mismatch repair protein MutS [Escherichia coli 536] gi|190908438|gb|EDV68027.1| DNA mismatch repair protein MutS [Escherichia coli F11] gi|300308565|gb|EFJ63085.1| DNA mismatch repair protein MutS [Escherichia coli MS 200-1] gi|324015283|gb|EGB84502.1| DNA mismatch repair protein MutS [Escherichia coli MS 60-1] Length = 853 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 312/889 (35%), Positives = 489/889 (55%), Gaps = 51/889 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R L+RL + P+D+A +R + + L L+N ++ EK+ + + L Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ-LPELRAQLENVDSAPVQALREKMGEFAE-LRD 405 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + D P RDGG + G + LDE R+L D + + L+++ E T + LK+ Sbjct: 406 LLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERERTGLDTLKV 465 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + Sbjct: 466 GFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKEYEDKVLTSKGK 519 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY P + Sbjct: 520 ALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFIDKPGIR 579 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 580 ITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTALI 630 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V Sbjct: 631 ALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLV 690 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L Sbjct: 691 LMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH---NQKDM 850 + + I F+H V G A SYG+ V LAG+P VI RA L+ E + + Q D Sbjct: 751 EHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESISPNAAATQVD- 809 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 810 -------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|94676984|ref|YP_588664.1| DNA mismatch repair protein MutS [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|172046203|sp|Q1LTQ0|MUTS_BAUCH RecName: Full=DNA mismatch repair protein mutS gi|94220134|gb|ABF14293.1| DNA mismatch repair protein MutS [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 855 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 314/887 (35%), Positives = 498/887 (56%), Gaps = 47/887 (5%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 ++++ + TPMM+QY +IK+ + D L+FYRMGDFYELF++DA LAS+ + I+LTKRG G Sbjct: 6 DKSILNHTPMMQQYWQIKAQHSDVLLFYRMGDFYELFYEDAKLASQLIDISLTKRGFSAG 65 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM G+P H + Y+ KL+ +G +AICEQ+ P NK V R VVR+VTPGT Sbjct: 66 EPIPMAGIPYHALDSYLAKLVALGKSVAICEQVGEP-----TINKGPVERRVVRIVTPGT 120 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 L+++ LL+ N L A+ + + + A +DI++G F +S + + + +++ R +P E+ Sbjct: 121 LSDEVLLNERQDNLLAAMLQDKQGFGYATLDITSGRFIVSEPKDFEAMAAELQRTNPAEL 180 Query: 198 IF--SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQ 254 ++ ++ L+ E++ +P F+ + ++ + +++ FG + Sbjct: 181 LYPDTQHNLALIEHRRGLRR-------RPIWEFELDTACQQLMIQFGTSSLKGFGIECAH 233 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSL 314 + AA + Y K TQ P I E + + +D+A NLE+ LSG E +L Sbjct: 234 LALRAAGCLLQYAKDTQRTAMPHISTITLERQEDYVVMDAATMRNLELTHNLSGGIEHTL 293 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 + +D+++T G R+ + P T I R SI +F+Q I +Q IL+ D+ Sbjct: 294 VAVLDHTVTSMGSRMLKRWLQMPTKHLTTIENRQQSI-YFLQGKFDI--LQPILRKIGDL 350 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP---EELRGAVEKLKKLPQSL 431 R L+RL + P+D+A IR+ ++ +I +L N +L V L Q L Sbjct: 351 ERILARLALRSARPRDLARIRNALQQLPDIQSLLADNTSGMHLSQLLSNVGYFDNLCQLL 410 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 E+ + S L RDGG + G + LDE R+L + + + L++K + T ++ L Sbjct: 411 ERAIVISPSALL----RDGGIIATGYNLELDELRALANNATDYLDILEMKERKHTGLETL 466 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 KI N GYFI+++ + K R+I RQT+ ++ R+ EL + E+++ + Sbjct: 467 KIGFNAVHGYFIQLSREQSHRAPK------RYIRRQTLKHVERYIIPELKEYEDKVITSK 520 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + AL +E + ++ L + ++ L ++ +A +D+ LA A +Y P+I+N Sbjct: 521 SKALSLEKKLYDALLDMLLPYLTQLQLSATALAELDVLSNLAERADTLHYVCPMINNQPI 580 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 + DGRHP+VE + SKPFIAN LS D+N + ++TGPNMGGKST++RQNA Sbjct: 581 INIIDGRHPVVEPLM----SKPFIANTLSLS---DQN--HMIIITGPNMGGKSTYMRQNA 631 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LIV++A +GS+VPAS A IG +D++F+R+G+AD+L SGRSTFMVEM ETA+IL+ AT QS Sbjct: 632 LIVLLAYIGSFVPASQAIIGPIDRIFTRIGAADDLVSGRSTFMVEMTETANILHNATCQS 691 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L +K NA Sbjct: 692 LVLMDEIGRGTSTYDGLSLAWACAESLASRIKAMTLFATHYFELTTLPNKIKGIVNAHFA 751 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR 851 + N+ I F+H + G A+ SYG+ V LAG+P VI A L E L ++ Sbjct: 752 AIEYNDTIAFMHSIQNGAANKSYGLSVASLAGIPRDVIKCASRKLHELENL----SNNIA 807 Query: 852 LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 L P + S ++ ++ ++ ++ D +SP AL LY++K Sbjct: 808 LTTP--LSSRSLPQFTQETSPVIQALQEIDPDSLSPRQALDLLYSLK 852 >gi|26249133|ref|NP_755173.1| DNA mismatch repair protein MutS [Escherichia coli CFT073] gi|227888273|ref|ZP_04006078.1| DNA mismatch repair protein [Escherichia coli 83972] gi|300976806|ref|ZP_07173623.1| DNA mismatch repair protein MutS [Escherichia coli MS 45-1] gi|301049508|ref|ZP_07196466.1| DNA mismatch repair protein MutS [Escherichia coli MS 185-1] gi|306812387|ref|ZP_07446585.1| DNA mismatch repair protein MutS [Escherichia coli NC101] gi|331648453|ref|ZP_08349541.1| DNA mismatch repair protein MutS [Escherichia coli M605] gi|331658844|ref|ZP_08359786.1| DNA mismatch repair protein MutS [Escherichia coli TA206] gi|30173066|sp|Q8FEL3|MUTS_ECOL6 RecName: Full=DNA mismatch repair protein mutS gi|26109540|gb|AAN81743.1|AE016765_145 DNA mismatch repair protein mutS [Escherichia coli CFT073] gi|222034428|emb|CAP77170.1| DNA mismatch repair protein mutS [Escherichia coli LF82] gi|227834542|gb|EEJ45008.1| DNA mismatch repair protein [Escherichia coli 83972] gi|281179737|dbj|BAI56067.1| DNA mismatch repair protein MutS [Escherichia coli SE15] gi|300298739|gb|EFJ55124.1| DNA mismatch repair protein MutS [Escherichia coli MS 185-1] gi|300409992|gb|EFJ93530.1| DNA mismatch repair protein MutS [Escherichia coli MS 45-1] gi|305854425|gb|EFM54863.1| DNA mismatch repair protein MutS [Escherichia coli NC101] gi|307554710|gb|ADN47485.1| DNA mismatch repair protein MutS [Escherichia coli ABU 83972] gi|312947263|gb|ADR28090.1| DNA mismatch repair protein MutS [Escherichia coli O83:H1 str. NRG 857C] gi|315293708|gb|EFU53060.1| DNA mismatch repair protein MutS [Escherichia coli MS 153-1] gi|315298777|gb|EFU58031.1| DNA mismatch repair protein MutS [Escherichia coli MS 16-3] gi|320194869|gb|EFW69498.1| DNA mismatch repair protein MutS [Escherichia coli WV_060327] gi|323188852|gb|EFZ74137.1| DNA mismatch repair protein MutS [Escherichia coli RN587/1] gi|330908765|gb|EGH37279.1| DNA mismatch repair protein MutS [Escherichia coli AA86] gi|331042200|gb|EGI14342.1| DNA mismatch repair protein MutS [Escherichia coli M605] gi|331053426|gb|EGI25455.1| DNA mismatch repair protein MutS [Escherichia coli TA206] Length = 853 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 312/889 (35%), Positives = 489/889 (55%), Gaps = 51/889 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R L+RL + P+D+A +R + + L L+N ++ EK+ + + L Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ-LPELRAQLENVDSAPVQALREKMGEFAE-LRD 405 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + D P RDGG + G + LDE R+L D + + L+++ E T + LK+ Sbjct: 406 LLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERERTGLDTLKV 465 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + Sbjct: 466 GFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKEYEDKVLTSKGK 519 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY P + Sbjct: 520 ALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFIDKPGIR 579 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 580 ITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTALI 630 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V Sbjct: 631 ALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLV 690 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L Sbjct: 691 LMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH---NQKDM 850 + + I F+H V G A SYG+ V LAG+P VI RA L+ E + + Q D Sbjct: 751 EHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESISPNAAATQVD- 809 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 810 -------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|325680315|ref|ZP_08159875.1| DNA mismatch repair protein MutS [Ruminococcus albus 8] gi|324108024|gb|EGC02280.1| DNA mismatch repair protein MutS [Ruminococcus albus 8] Length = 871 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 303/828 (36%), Positives = 457/828 (55%), Gaps = 45/828 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY +K + ++FYR+GDFYE+FF+DALL S+ L +TLT R L + PMCG Sbjct: 12 TPMMQQYAAVKKKYKNHILFYRLGDFYEMFFEDALLVSKELELTLTGRDCGLEERAPMCG 71 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H + Y++KLI+ GH +AICEQ + P E + LV R V+R+VTPGTL E +L Sbjct: 72 VPYHACDVYLKKLIEKGHMVAICEQTKDPSECQ-----GLVPREVIRVVTPGTLIESSML 126 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG---IFKISTSN-HDRLISDIMRIDPREIIFSE 201 + +NYL A E ++ DISTG +F+ S + + I+++ R P EI+ ++ Sbjct: 127 DESSNNYLCAFYMKAKEASLCLADISTGEVHLFEFSGKDTANSAINELSRFSPSEILIND 186 Query: 202 KELSHAEYKSLF-ETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTA 259 LS+ E + E + + FD + +++ ++D+ G + A Sbjct: 187 AVLSNKEISAFIREKIKTSVQLLEDADFDPEHHTDEVLTQFSVNSLDSLGLKADSISAFA 246 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTI 318 +YI TQ R D + I AR NLE+ TL +++ SLL I Sbjct: 247 VCGLFAYIHDTQKALVGRFSEITRHDADPIMTIGFTARRNLELTETLRNKQKKGSLLWVI 306 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 + T G R+ + PL + KI RL+++ +++P+ + I+++L D+ R + Sbjct: 307 SNTKTSMGNRMLKSWLEQPLINPAKIIDRLNAVEQLVRDPVALGEIKEVLGGVYDLERLM 366 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 +R+ P+DI + + L L DL ++L KL K TL ++ Sbjct: 367 TRVMYKSASPRDIKSL------SLTALKL---PDLKKQLSAFDGKLLKDCNRRISTLDAI 417 Query: 439 -------LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 L D+ P +DGG +RDG + LD R++ K II + + E+T IK L Sbjct: 418 SNLVENALVDEPPANVKDGGVIRDGFNEQLDGLRNIISGGKGIIDDIAEREKEKTGIKTL 477 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 KI +N GY+IEVT S ++ D +I +QT++N RF T EL EN I A+ Sbjct: 478 KIGYNRVFGYYIEVTKSYYDLIP------DNYIRKQTLTNCERFITDELKVAENTILGAS 531 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + L +E E F + + I Q + + + +A +D+ + A A + NY +P I Sbjct: 532 DKILSLEQEIFTEVRDFIATQLRIVQDTATAVAEVDVLCSYATAAIKNNYTKPEIAIDGI 591 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 +K+GRHP+VE Q+ + F+ ND L D S ++ ++TGPNM GKST++RQ A Sbjct: 592 INIKNGRHPVVEL---MQTDEVFVPNDTYL----DLGSNRMSVITGPNMSGKSTYMRQVA 644 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LI +MAQ+G +VPA YA I +VD++F+R+G++D+L +G+STFMVEM E A I+ AT S Sbjct: 645 LITLMAQIGCFVPADYAKISVVDQIFTRIGASDDLTAGQSTFMVEMSEVADIVKHATKDS 704 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNR---CRGLLATHFHELTDLSKSLKRFHNA 788 VILDE+GRGT+T DG++IA + EY+ T+R C+ L ATH+HEL L L N Sbjct: 705 LVILDEVGRGTSTFDGIAIARSVSEYI-STSRSLGCKTLFATHYHELISLEDELTGVKNY 763 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 ++ V + I FL K++PG AD SYGI+V KLAGLP+ +I RA +L Sbjct: 764 SVAVKRQGDNIKFLRKIVPGGADESYGIEVAKLAGLPSKIIGRAKSLL 811 >gi|215488050|ref|YP_002330481.1| DNA mismatch repair protein MutS [Escherichia coli O127:H6 str. E2348/69] gi|254766626|sp|B7UHE9|MUTS_ECO27 RecName: Full=DNA mismatch repair protein mutS gi|215266122|emb|CAS10547.1| methyl-directed mismatch repair protein [Escherichia coli O127:H6 str. E2348/69] Length = 853 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 312/889 (35%), Positives = 489/889 (55%), Gaps = 51/889 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LTSVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R L+RL + P+D+A +R + + L L+N ++ EK+ + + L Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ-LPELRAQLENVDSAPVQALREKMGEFAE-LRD 405 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + D P RDGG + G + LDE R+L D + + L+++ E T + LK+ Sbjct: 406 LLERAIIDTPPVLVRDGGVIATGYNEELDEWRALADGATDYLERLEVRERERTGLDTLKV 465 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + Sbjct: 466 GFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKEYEDKVLTSKGK 519 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY P + Sbjct: 520 ALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFIDKPGIR 579 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 580 ITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTALI 630 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V Sbjct: 631 ALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLV 690 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L Sbjct: 691 LMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH---NQKDM 850 + + I F+H V G A SYG+ V LAG+P VI RA L+ E + + Q D Sbjct: 751 EHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESISPNAAATQVD- 809 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 810 -------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|212639351|ref|YP_002315871.1| DNA mismatch repair protein MutS [Anoxybacillus flavithermus WK1] gi|212560831|gb|ACJ33886.1| Mismatch repair ATPase (MutS family) [Anoxybacillus flavithermus WK1] Length = 854 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 298/885 (33%), Positives = 493/885 (55%), Gaps = 46/885 (5%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 + TPM++QY+ IKS D+ +F+R+GDFYE+FF+DA+ AS+ L ITLT R + +PM Sbjct: 2 AYTPMIQQYLAIKSQYKDAFLFFRLGDFYEMFFEDAIKASQELEITLTSRDGGGEERVPM 61 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVP H+A YI++LI+ G+++AICEQ+E P AK +VRR VV+L+TPGT+ E + Sbjct: 62 CGVPYHSAAMYIERLIEKGYKVAICEQVEDPKTAK-----GVVRREVVQLITPGTVMEGK 116 Query: 144 LLSPTDSNYLMAVARIR-TEWAIAWIDISTGIFKISTSN-HDRLISDIMRIDPREIIFSE 201 L +NYL ++ + A+ D++TG +++ + + ++++I I +EI+ Sbjct: 117 QLEDKANNYLASLTSFEDGTYGFAYADLTTGESRMTMLHAFEDVLNEIYSIGAKEIVVP- 175 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 +H E LF+ + ++ + S ++ + TFG Sbjct: 176 --TAHQEKWELFQERYTLTISYEDETTIPLDCTSIVSHLKQEKLLVTFGRL--------- 224 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 ++Y+ KTQ + + E ++ + + ID ++ NLE+ T+ S + SL +D Sbjct: 225 --LNYLVKTQKRHLDHLQPVELYEVDAHMKIDMYSKRNLELTETIRSKGKTGSLFWLLDE 282 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 ++T GGRL + I PL D KI R + + + ++ L+ D+ R R Sbjct: 283 TMTAMGGRLLKQWIDRPLLDREKIEQRWHFVEQLLIHYFERQELRDYLRGVYDLERLAGR 342 Query: 381 LKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 + G +D+ ++ ++ I+ L + +++D + ++ ++L Q LE+ + Sbjct: 343 VAFGNVNARDLIQLKKSLKQVPFISSLLMQIQDDHVQSFAKHLDACEELVQLLEEAIE-- 400 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 ++ P R+GG ++DG + +LD R K IA L+ K E T IK+LKI +N Sbjct: 401 --ENPPLSVREGGIIKDGYNETLDRFRDASRNGKTWIAQLEAKERELTGIKSLKIGYNRV 458 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IEVT ++ +L + R+ +QT++N RF T EL + E I A ++ +E Sbjct: 459 FGYYIEVTKANLHLL-----PEGRYERKQTLANAERFVTKELKEKEALILEAEEKSMELE 513 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 E F + + + L ++ ++ +D+ A ++++ NYC+P +V+ GR Sbjct: 514 YELFVSIREQVKQYIVRLQKLAKYMSQLDVLQCFATVSEKYNYCKPQFSYDRRLVVRQGR 573 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VEK L + ++ NDC + + + L+TGPNM GKST++RQ AL IMAQ Sbjct: 574 HPVVEKVL---GANVYVPNDCYMDAERE-----MLLITGPNMSGKSTYMRQIALTAIMAQ 625 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +G +VPA A + I D++F+R+G+AD+L +G+STFMVEM+E + AT S ++ DEI Sbjct: 626 IGCFVPAEEAILPIFDQVFTRIGAADDLVAGQSTFMVEMLEARHAIVHATQNSLILFDEI 685 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DG+++A A IEY+H+ + L +TH+HELT L + L R N + + N Sbjct: 686 GRGTSTYDGMALAQAMIEYIHDRIGAKTLFSTHYHELTALEQQLPRLKNVHVSAIEENGN 745 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK----LYHHNQKDM-RLY 853 +IFLHK+ G AD SYGI V +LA LP +I RA IL+ FE + N+K +L Sbjct: 746 VIFLHKIKEGPADKSYGIHVAQLAKLPLDLIQRAEQILREFETNATPIVKENRKQFEQLS 805 Query: 854 YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E Q E +++ SK +K +++I+ LNL +M+PL A+ LY ++ Sbjct: 806 MFEEQHDEGRSSASKKEKEVIKRIQSLNLLDMTPLEAMNKLYEIQ 850 >gi|329956370|ref|ZP_08296967.1| DNA mismatch repair protein MutS [Bacteroides clarus YIT 12056] gi|328524267|gb|EGF51337.1| DNA mismatch repair protein MutS [Bacteroides clarus YIT 12056] Length = 862 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 302/890 (33%), Positives = 492/890 (55%), Gaps = 53/890 (5%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+Q++++K+ +PD+++ +R GDFYE + DA++AS LGITLTKR GK I M G P Sbjct: 1 MMKQFLDLKAKHPDAVMLFRCGDFYETYSTDAIVASEILGITLTKRANGKGKTIEMAGFP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H + Y+ KLI+ G R+AIC+Q+E P KK LV+R + LVTPG D +L+ Sbjct: 61 HHALDTYLPKLIRAGKRVAICDQLEDPKLTKK-----LVKRGITELVTPGVSINDNVLNY 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF--SEKELS 205 ++N+L AV + +A++DISTG F + + + + P+E++F + + Sbjct: 116 RENNFLAAVHFGKGACGVAFLDISTGEFLTAEGPFEYVDKLLNNFAPKEVLFERGRRGMF 175 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK-----TAA 260 + S F T + F + + ++ ++ + + FG VE A+ Sbjct: 176 EGNFGSKFFTF-----ELEDWVFTETTAREKLLKHFEVKNLKGFG----VEHLKNGIIAS 226 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 A + Y+ TQ I R + + +D +LE++ +++ SLL ID Sbjct: 227 GAVLQYLILTQHTQIGHITSLARIEEDKYVRLDKFTVRSLELMGSMNDGG-SSLLNVIDK 285 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 +I+ G RL + PL D IN RL+ + +F + P I++ L D+ R +S+ Sbjct: 286 TISPMGARLLKRWMVFPLKDVQPINERLNVVEYFFRQPDFKELIEEQLHLIGDLERIISK 345 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEKLKKLPQSLEKTLSSM 438 + +GR P+++ ++ +++ I + D + G ++ + + ++K ++ Sbjct: 346 VAVGRVSPREVVALKVALQAIEPIKEACMDADNASLNHIGGQLDICRAIRDRIDKEIN-- 403 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 +D P GG ++ G +A LDE R + K + +Q + +E+T I +LKI +NN Sbjct: 404 --NDPPLLINKGGVIKSGVNAELDELRQIAYSGKDYLLKVQQRESEQTGIPSLKIGYNNV 461 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IEV + + KD + +I +QT+ N R+ T EL + E +I A + L++E Sbjct: 462 FGYYIEVRN-----VHKD-KVPQEWIRKQTLVNAERYITQELKEYEEKILGAEDKILVLE 515 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + + L ++ E ++ + IA +D ++ A A+E NY RP+I + ++ GR Sbjct: 516 TQLYTELVQSLNEFISAIQIDANQIARLDCLLSFATAARENNYIRPVISDDEVLEIRQGR 575 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP++EK L + +IAND L D ++ ++ ++TGPNM GKS LRQ ALI +MAQ Sbjct: 576 HPVIEKQLP--IGEKYIANDVML----DSSTQQIIIITGPNMAGKSALLRQTALITLMAQ 629 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA AHIG+VDK+F+RVG++DN++ G STFMVEM E A ILN +++S V+ DE+ Sbjct: 630 IGSFVPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNLSSRSLVLFDEL 689 Query: 739 GRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 GRGT+T DG+SIAWA +EY+HE R R L ATH+HEL ++ KS KR N + V + + Sbjct: 690 GRGTSTYDGISIAWAIVEYIHEHPRAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEVD 749 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 +IFL K+ G ++HS+GI V K+AG+P +++ RA DILK E N++ P Sbjct: 750 NKVIFLRKLERGGSEHSFGIHVAKMAGMPKSIVKRADDILKQLET---DNRQQGISGKPM 806 Query: 857 IQTKESKNNLSKNDKLFVEKIKC------LNLD--EMSPLTALKTLYAVK 898 + E++ + + + I C LNLD ++PL AL L +K Sbjct: 807 AEVGETRGGMQLSFFQLDDPILCQIRDEILNLDVNNLTPLEALNKLNDIK 856 >gi|323697886|ref|ZP_08109798.1| DNA mismatch repair protein MutS [Desulfovibrio sp. ND132] gi|323457818|gb|EGB13683.1| DNA mismatch repair protein MutS [Desulfovibrio desulfuricans ND132] Length = 868 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 306/882 (34%), Positives = 457/882 (51%), Gaps = 38/882 (4%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M+ QY+ K +P L+F+RMGDFYELFF+DA + SR + I LT R + IPMCG+P Sbjct: 1 MLEQYLRFKEEHPGCLLFFRMGDFYELFFEDAEVVSRAVQIALTSRNPNDENPIPMCGMP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H Y+ +L+ G++IAIC+QIE P EAK LV+R+V R++TPGT+ ED L Sbjct: 61 HHAVEPYLSQLLDKGYKIAICDQIEDPKEAK-----GLVKRDVTRVLTPGTVVEDSNLRS 115 Query: 148 TDSNYLMAVA--RIRTEWAIAWIDISTGIFK-ISTSNHDRLISDIMRIDPREIIFSEKEL 204 +NYL A + IAW+D STG + + + L +++IDP E++ + Sbjct: 116 KANNYLGAFYWDSAKDAGGIAWLDFSTGQWSGLYSRKEPELWQWMVKIDPSELLLPQGVK 175 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 ++ L G V P FFD + + +RI + + +D+ G + E A A+ Sbjct: 176 VPPQFNDL---AGQVTAVAPGTFFDLAGARNRILEAQHAADLDSLGLQGKNELVRACGAL 232 Query: 265 -SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDYSI 322 +Y+ +TQ +G ++ L +D NLEI R L G S +L + +D ++ Sbjct: 233 LTYLDQTQKGEFGHLGEFRPLNLGKHLLLDEVTERNLEIFRRLDGRSGPGTLWQVMDRTM 292 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGRL R+ P + I + + F + L ++ L S D+ R +R+ Sbjct: 293 TPMGGRLLEARLRQPWRNLAPIEKTQECVAFLFERDRLRGDVRHALDSVYDLERLSTRIF 352 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDL--PEELRGAVEKLKKLPQSLEKTLSSMLS 440 +GR PKD +R + + +L DL +L+ + K + L L L Sbjct: 353 LGRANPKDFIALRRSLSMLPRLHSLLAGEDLDPAPDLKRILAKWDAM-DDLCALLDKALV 411 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D P DGG R G D LDE L + + + +L + I LK+ N G Sbjct: 412 DTPPPVITDGGLFRKGFDPVLDELIELNEHGEDRLKALHRAELAKNDIPKLKLGFNKVFG 471 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 YF EV+ + + D FI RQT+ N R+ T EL +LE++I +A+ +E + Sbjct: 472 YFFEVSKAYKG------QVPDHFIRRQTLVNSERYITPELKELEDKIISASEERKSLEYK 525 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F+ L + + + IA +D LA A+ + RP++ + ++ GRHP Sbjct: 526 LFQELREHLAKARSRFLFMADAIASLDYWQGLAEAARVNEWTRPVLHDGLEIEIEQGRHP 585 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE + + +I D + ++ L+TGPNM GKST LRQ A++ IMAQ+G Sbjct: 586 VVEAAM---GAANYIPGDLRMD-----QGRRILLITGPNMAGKSTVLRQVAIMTIMAQIG 637 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA A IG+ D++FSRVG++DNLA G STFMVEM ETA IL QA +S VILDEIGR Sbjct: 638 SFVPARSARIGLADRVFSRVGASDNLAQGHSTFMVEMTETARILRQAGKRSLVILDEIGR 697 Query: 741 GTATLDGLSIAWATIEYL--HETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GT+T DGLS+AWA +E L R L ATH+HELT L + N + V + Sbjct: 698 GTSTYDGLSLAWAVVEELSTRAGGSVRTLFATHYHELTGLEGKIDGLRNLNIAVKEWKGD 757 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ------KDMRL 852 I+FL +++PG AD SYGI+V +LAG+P V+ RA +IL E+ NQ + + Sbjct: 758 IVFLRRLVPGPADRSYGIEVARLAGVPRPVVERAREILAELEEKSQDNQAKGAVDRASQT 817 Query: 853 YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 P K + + + ++ L++D M+P+ AL L Sbjct: 818 LLPGFGAPPIKIDRELCEHPIITQLTDLDVDGMTPIQALMLL 859 >gi|307564801|ref|ZP_07627329.1| DNA mismatch repair protein MutS [Prevotella amnii CRIS 21A-A] gi|307346523|gb|EFN91832.1| DNA mismatch repair protein MutS [Prevotella amnii CRIS 21A-A] Length = 887 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 307/899 (34%), Positives = 495/899 (55%), Gaps = 36/899 (4%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 + +N K TPMM+Q+ +K+ +PD+L+ +R GDFYE + DDA+ A++ LGITLTKR Sbjct: 1 MAKNDKGMTPMMKQFFSMKAKHPDALLLFRCGDFYETYHDDAIDAAKILGITLTKRNNSA 60 Query: 78 G-KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKK--RGNKSL------VRR 128 G DI M G P H + Y+ KLI+ G R+AIC+Q+E P + ++ +G K L V+R Sbjct: 61 GCSDIAMAGFPHHALDTYLPKLIRAGKRVAICDQLEDPKKKREEIKGKKGLSPMDKMVKR 120 Query: 129 NVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISD 188 + LVTPG D +L+ ++N+L AV + I+++DISTG F S +D + Sbjct: 121 GITELVTPGVALTDNVLNYKENNFLAAVHFGKQACGISFLDISTGEFLTSEGTYDYVKKL 180 Query: 189 IMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDT 248 I P+EI++ +++ F T VF + + ++ ++ ++ T + Sbjct: 181 IGSFSPKEILYDRT--CKKDFEQNFGTKLCCFEMDDWVFTEQNANQ-KLLKHFATTNLKG 237 Query: 249 FGSFSQVEKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS 307 FG AA AI Y++ TQ I R + + + +D +LE++ T++ Sbjct: 238 FGVDHLHNGIIAAGAIMQYLELTQHTQIRHITALTRIEEEKYVRMDRFTIRSLELISTIN 297 Query: 308 GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI 367 SLL ID++IT GGR+ + PL I RLD +++F + IQ+ Sbjct: 298 -EEGTSLLNVIDHTITPMGGRMLRRWVVFPLKTVKTIEERLDIVDYFFKQQNFCETIQEQ 356 Query: 368 LKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL 427 D+ R +S++ +GR P+++ +++ +++ I + L D + L+ E+L L Sbjct: 357 FHRIGDLERIISKVAVGRVSPREVVQLKNALKAIIPVKEACLHAD-NKVLKRIGEQLN-L 414 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 +SL + + +D P G + G + LDE R++RD K + +Q + A+ T Sbjct: 415 CESLRNRIEKEIQNDPPQLTNKGNIIAHGYNQELDELRTIRDHGKEYLMKIQQQEAKRTG 474 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 I +LKI NN GY++EV ++ + ++ +I +QT++ R+ T EL + E +I Sbjct: 475 INSLKIGFNNVFGYYLEVRNTFKDSVPQE------WIRKQTLAQAERYITQELKEYEEKI 528 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 A L++E + F L N + E + + +IA +D + +KE NY RPI+D Sbjct: 529 LGADERILILENKLFLELINDMQEFIPQIQINANLIAHLDCIFSFYYTSKEHNYIRPIVD 588 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 +S +K GRHP++E L + +I ND L+ ND ++ ++TGPNM GKS L Sbjct: 589 DSNILNIKQGRHPVIETQLP--LGEQYIPNDVLLN--NDDQ--QIMMITGPNMAGKSALL 642 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ ALIV++AQ+G +VPA A IG+VDK+F+RVG++DN++ G STFMVEM E ++ILN Sbjct: 643 RQTALIVLLAQIGCFVPAESATIGVVDKIFTRVGASDNISLGESTFMVEMTEASNILNNV 702 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRF 785 T S V+ DE+GRGT+T DG+SIAWA +EYLHE R R L ATH+HEL ++ K+ Sbjct: 703 TPHSLVLFDELGRGTSTYDGISIAWAIVEYLHEQPRAKARTLFATHYHELNEMEKNFHGI 762 Query: 786 HNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH 845 N + V + N IIFL K+ G ++HS+GI V +AG+P +++ RA IL E Sbjct: 763 KNYNVSVKEVNGKIIFLRKLEKGGSEHSFGIHVADIAGMPRSIVKRAKTILSELESDNAQ 822 Query: 846 NQKDMRLYYPEIQTKESKNNLS--KNDKLFVEKIK----CLNLDEMSPLTALKTLYAVK 898 ++ +++ + LS K D +E+I+ L+++ ++P+ AL L +K Sbjct: 823 VGSKDKISINKLEQNKEDMQLSFFKLDDPVLEQIRDEIIGLDINNLTPVEALNKLNEIK 881 >gi|289208786|ref|YP_003460852.1| DNA mismatch repair protein MutS [Thioalkalivibrio sp. K90mix] gi|288944417|gb|ADC72116.1| DNA mismatch repair protein MutS [Thioalkalivibrio sp. K90mix] Length = 897 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 318/916 (34%), Positives = 480/916 (52%), Gaps = 54/916 (5%) Query: 5 FSSPQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASR 64 F P +E + E L + TPMM+QY+ IK+ PD+L+ YRMGDFYELF+DDA A+ Sbjct: 7 FPKPGSTAAEPMSTAEPLSAHTPMMQQYLAIKAEYPDTLLLYRMGDFYELFYDDAERAAG 66 Query: 65 CLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKS 124 L ITLT+RG+ G IPM G+PVHT Y+ +L+K+G +AICEQ K Sbjct: 67 LLDITLTRRGESAGAPIPMAGIPVHTLESYLARLLKMGESVAICEQT-----GAVGAQKG 121 Query: 125 LVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARI--------RTEWAIAWIDISTGIFK 176 V+R VVR+VTPGT+TE+ LL N L+AV +T + IA ++ ++G F+ Sbjct: 122 PVKREVVRIVTPGTVTEEALLDARQVNRLVAVCPAASAAVKGRKTGYGIASLEFASGQFR 181 Query: 177 I-STSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISES 235 + + L +++ R+DP E++ +L+ A + T + FD + Sbjct: 182 VLEVGDETELAAELARLDPVELLV--PDLTGA----IPGTESFTPQRHADWHFDAVSAHR 235 Query: 236 RIADYYNITTVDTFGSFS-QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDS 294 + ++ + FG + AA A ++Y++ + I E L +D Sbjct: 236 LLITHFGTRDLSGFGCEGLDLGIAAAGALLAYVQNRHRGDLAHITSLAHEQRSQMLVLDP 295 Query: 295 AARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFF 354 A R NLE+ RTL+G R SLL +D + + G R + + PL + I R +I Sbjct: 296 ATRRNLELTRTLTGERRGSLLALLDTTQSAMGARRLMQWLHQPLRERAIIRERQTAITAL 355 Query: 355 IQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP 414 ++ + PI+ L S D R LSR+ +G P+D+ + + + L+ L Sbjct: 356 LEQEA-VTPIRDALAGSADSERILSRIVLGSARPRDLTALLASLER-LPALHAALTP--- 410 Query: 415 EELRGAVEKLKKL-----PQS-LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLR 468 L E+L L P+ L L + L ++ P DGG +R G D LD R+L Sbjct: 411 --LANVAERLSALHAALAPEDDLTARLGAALVEEPPLRVTDGGMIRAGYDPELDRLRALE 468 Query: 469 DQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQT 528 + ++ + E T I LK+ +N GY+IEV+ S ++ E RF+ RQT Sbjct: 469 SDGDTFLREIEAREREATGIPTLKVAYNRVHGYYIEVSRSRSA------ELPGRFMRRQT 522 Query: 529 MSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDI 588 + N R+TT EL E+ I +A A+L E F+ L + ++ L + +A +D+ Sbjct: 523 LKNTERYTTEELKRFEDEILSAREQAMLRERALFDDLIADLQARAPRLRTLADAVAELDV 582 Query: 589 SIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKN 648 LA A ++ P + ++ GRHP+VE L PF+AND +L D Sbjct: 583 LACLAERAARLDWHCPELVQDPGIHIEQGRHPVVEAGL----DTPFVANDTEL----DPE 634 Query: 649 SGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLAS 708 + +L ++TGPNMGGKST++RQ ALIV++A MGS+VPA+ A IG VD++F+R+G++D+L S Sbjct: 635 ARRLLVITGPNMGGKSTYMRQTALIVLLACMGSFVPAARAQIGPVDRIFTRIGASDDLTS 694 Query: 709 GRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLL 768 GRSTFMVEM E A+IL+ A +S V++DEIGRGT+T DGL++A A E L NR L Sbjct: 695 GRSTFMVEMTEAANILHNAGPESLVLMDEIGRGTSTFDGLALALACAERLTRHNRALTLF 754 Query: 769 ATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTV 828 ATH+ ELT L++ N + I+FLH+V G A+ SYG+QV +LAG+P V Sbjct: 755 ATHYFELTALAEREPAVANVHTDAMEHEHSIVFLHQVREGPANQSYGLQVAQLAGVPADV 814 Query: 829 ISRAYDILKTFE-KLYHHNQKDMRLY--YPEIQTKESK---NNLSKNDKLFVEKIKCLNL 882 + A + L+ E + + + L+ P+ T + S ++ L+ Sbjct: 815 LKLAREHLRELEDRAAATDSPQLGLFASAPDATTTAPEPVAEERSSEERALKALFDTLDP 874 Query: 883 DEMSPLTALKTLYAVK 898 DEMSP AL LY +K Sbjct: 875 DEMSPREALDALYRMK 890 >gi|219668762|ref|YP_002459197.1| DNA mismatch repair protein MutS [Desulfitobacterium hafniense DCB-2] gi|219539022|gb|ACL20761.1| DNA mismatch repair protein MutS [Desulfitobacterium hafniense DCB-2] Length = 850 Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust. Identities = 312/878 (35%), Positives = 488/878 (55%), Gaps = 42/878 (4%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM+QY IKS PD+++F+R+GDFYE+F +DA A+ L I LT R G+ IPMC Sbjct: 2 TTPMMQQYKSIKSQAPDAILFFRLGDFYEMFGEDARTAAPVLEIALTGRDSGGGERIPMC 61 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H + Y+ KL+ G+++A+CEQ+E P + K +VRR ++R+++PGT+T+ Sbjct: 62 GVPHHAVDGYLLKLVSAGYKVALCEQVEDP-----QATKGIVRREIIRIISPGTMTDS-- 114 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSEKE 203 L +N+L AV + +W +A++D+STG F + T + D L +++ RI P E++ + Sbjct: 115 LVEQANNFLAAVYHDQ-DWGLAFVDVSTGEFTVFQTESIDILTTELSRIRPSELLLPAEL 173 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 L ++ + T + + H++ E R + + F F K AA Sbjct: 174 LKAKHWRPYYLT------QREKKTYQHTLLEQRFTE-----QTELFQEFPTAMK-AANGL 221 Query: 264 ISYIKKTQMVNKPT-IGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDYS 321 YI +T P+ I + + +D R NLE+ ++ G ++ +LL +D++ Sbjct: 222 WQYILETSPGIDPSHILKINAYRPEHWMLLDPWTRRNLELTESIRGQGKKGTLLSVLDFT 281 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T GGRL I PL +I RLD + +++ L + ++ D+ R + ++ Sbjct: 282 KTAFGGRLLRRWIEQPLLLKEEIEKRLDYVEALVEDSFLRGDLIQLFNKVFDLERLMGKV 341 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 G +D+ + + + L L L+ + L+ L L TL ++ Sbjct: 342 SYGTANARDLLSLAQTL-GVLPQLRALLAEGKSASLQAFIPALEGL-DPLAVTLEQAINP 399 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + P +DG L+ G +DE RS+ K +A L+ + T I++LK+ +N GY Sbjct: 400 EAPISLKDGNLLKAGYSEEIDELRSISSGGKAWVAKLESMEKDRTGIRSLKVGYNKVFGY 459 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IEVT +++ ++ + +I +QT++N RF T EL + E +I A +E + Sbjct: 460 YIEVTHANSHLIPAE------YIRKQTLANAERFITPELKEYEQKILGAEEKVTQLEYQL 513 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 F L + Q+ + A+ +A ID+ +LA A +Y RP++ + +GRHP+ Sbjct: 514 FLELRETVRGQAARILEAAHALAEIDVYASLAEAAVRHHYSRPVMKGEGGLTIIEGRHPV 573 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE L+ S F+ ND L+ DK+ L L+TGPNM GKST++RQ ALIV+MAQ+GS Sbjct: 574 VESMLQDTS---FVPNDTILT--EDKH---LALITGPNMAGKSTYMRQVALIVLMAQIGS 625 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA A I I D +F+RVG++D+LASG+STFMVEM E A IL T S +ILDE+GRG Sbjct: 626 FVPAQQATIPIADHIFTRVGASDDLASGQSTFMVEMYEVAHILRHVTPHSLIILDEVGRG 685 Query: 742 TATLDGLSIAWATIEYLH-ETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 TAT DGLSIAWA EYL + N+ + L ATH+HELTDL ++ N + V + E I+ Sbjct: 686 TATYDGLSIAWAVAEYLAGQENKPKTLFATHYHELTDLEETHAGIFNLHVGVREHGEEIV 745 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 FLHK+IPG AD SYGIQV KLAGLP ++ RA IL E N+++ L E T+ Sbjct: 746 FLHKIIPGRADRSYGIQVAKLAGLPANLLHRAKIILHELESSAKENRQE-HLLNKEKATQ 804 Query: 861 ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 S + D L ++++ L++++++P AL L+ +K Sbjct: 805 LSLFEVQPLDPL-LQEVSELSVEDLTPRQALDYLFDLK 841 >gi|253577127|ref|ZP_04854448.1| DNA mismatch repair protein MutS [Paenibacillus sp. oral taxon 786 str. D14] gi|251843509|gb|EES71536.1| DNA mismatch repair protein MutS [Paenibacillus sp. oral taxon 786 str. D14] Length = 951 Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust. Identities = 299/835 (35%), Positives = 474/835 (56%), Gaps = 55/835 (6%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPM+ QY+ IK+ D+ +F+R+GDFYE+FF+DA+LA++ L ITLT R + I Sbjct: 1 MATYTPMIEQYLRIKAEAQDAFLFFRLGDFYEMFFEDAILAAKELEITLTGRDGGAEEKI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A++YI +LI+ G+++AICEQ+E P + K +VRR +VR++TPGT+ E Sbjct: 61 PMCGVPYHSADNYIHRLIEKGYKVAICEQMEDPSQ-----TKGMVRREIVRVITPGTIME 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKIST-SNHDRLISDIMRIDPREIIF 199 + + +NY+++V + A+A D+STG ++ S +N + L +I DP EII Sbjct: 116 GKTVGERTNNYIVSVTERQGMMALAACDLSTGELYATSAPANKEWLRDEIGLYDPAEII- 174 Query: 200 SEKELSHAEYKSLFETLGNVA-VAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE-- 256 +KEL L G A +++P V+ + A T FG + Sbjct: 175 GDKEL-------LDWIAGQAAPLSKPVVY-------TPWAKAKEDTARSLFGEAEWIRLE 220 Query: 257 ---KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQ 312 + A + Y+ +TQ + + + + + +D R NLE++ T+ S++ Sbjct: 221 PERRDNIAVLVGYLSETQKRSLGQLTKISAYEPEHFMILDPFTRRNLELVETVRERSKKG 280 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 SLL +D + T G RL I PL T+I RL+++ IL ++ L+ Sbjct: 281 SLLWLLDRTETSMGSRLLRRWIDKPLLQKTRIEERLEAVEHLHSAFILREDLRGALQDIY 340 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE 432 D+ R + R+ G +D+ ++ + I L + A LK++ +++ Sbjct: 341 DLERLVGRVAFGNANGRDLVALKTSLLQVPAIKTLCADS--------ASTTLKRIASAMD 392 Query: 433 KT------LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 + + + ++D+ P RDGG ++ G A LDE R KR IA L+ + T Sbjct: 393 ECADLADMIDAAIADEPPVSVRDGGLIKAGYHARLDELREASVNGKRWIAELEAAERQAT 452 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 IK+LKI +N GY+IEVT ++ S L + R+ +QT++N RF T EL + E Sbjct: 453 GIKSLKIGYNKVFGYYIEVTRANLSAL-----PEGRYERKQTLANAERFVTPELKEKEAL 507 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 I A + +E F L I L ++ IA ID+ +LA +A + ++ +P + Sbjct: 508 ILEAEEKMVDLEYTLFNELRERIAADIPRLQKLAEQIAEIDVLRSLAQVASDNSFVKPKL 567 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 + +FIV+ GRHP+VE +K + FIAN +L K+ + L+TGPNM GKST+ Sbjct: 568 TDGYDFIVEQGRHPVVEAVMKDTA---FIANSTELR----KDEASILLITGPNMAGKSTY 620 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ ALI I+AQ+GS+VPA+ A I +VD++F+R+G+AD+L G+STFMVEM + + + Sbjct: 621 MRQVALISILAQIGSFVPAAKAEIPLVDRIFTRIGAADDLIGGQSTFMVEMADIQIMTEK 680 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT +S +I+DE+GRGT+T +G++IA A IEY+H+ C+ L++THFHEL L SL+ + Sbjct: 681 ATPRSLIIIDELGRGTSTSEGMAIAQAVIEYVHDRIGCKALVSTHFHELAYLEHSLRGLN 740 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 N ++ V +S + + FL K+IPG AD SYGI +LAGLP+ +I RAY +LK E+ Sbjct: 741 NYSMAVQESGDKVHFLRKLIPGAADTSYGIYCARLAGLPDEIIGRAYGLLKELEE 795 >gi|307299174|ref|ZP_07578975.1| DNA mismatch repair protein MutS [Thermotogales bacterium mesG1.Ag.4.2] gi|306914970|gb|EFN45356.1| DNA mismatch repair protein MutS [Thermotogales bacterium mesG1.Ag.4.2] Length = 820 Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust. Identities = 301/822 (36%), Positives = 460/822 (55%), Gaps = 47/822 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+E+K+ D LV +R+GDFYE F DDA L S L I LT R +PM G Sbjct: 5 TPMMKQYLEVKNNYKDCLVLFRLGDFYETFLDDAKLVSNELQIVLTSRN-----GVPMAG 59 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+ N Y++KL+ GH++AICEQ E P AK LV+R V R+VTPGT+ ED+LL Sbjct: 60 VPYHSINGYLKKLVDAGHKVAICEQTEDPALAK-----GLVKREVTRVVTPGTIVEDELL 114 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISD-IMRIDPREIIFSEKEL 204 ++NY++A+ + + I D+STG IS + + D I+ P +++ E Sbjct: 115 PEAENNYIIAIGKSGEFFIIVLADVSTGEVIISEAEDLISLKDFIVASQPSQVLLRES-- 172 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESR----IADYYNITTVDTFG-SFSQVEKTA 259 K L + + V + + D + S + ++Y+I ++D QVE Sbjct: 173 ----LKDLKKEIAGVTSSMVELIEDWHFALSSGINYVKEFYSIASIDHLELDDKQVE--V 226 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A Y++ + P ++ +D++ NL + R R+ SL + +D Sbjct: 227 LGALFKYLETINFSPLKHLSLPRILKKTDSMQLDASTVENLNLFRL---ERKGSLFEILD 283 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + TG G R + + SPLTD KI+ RLD ++ + L++ +++ S D+ R S Sbjct: 284 ETTTGMGKRRLRQWLLSPLTDRHKIDERLDVVHALYSDRHLLDELREYFHSVYDIERITS 343 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 RL R P+D+ +R + I L + LR E+L+ P LE L + Sbjct: 344 RLSTDRITPRDLQSLRTSLTVLPYIKELISNETAFDRLR---ERLELFPSELE-LLRRSI 399 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 D+ + DG +R G DA LD R L D S I +++ + T I +LK+K N Sbjct: 400 VDEPSSSIGDGNVIRKGFDAQLDSLRDLLDNSVEKIRAIETSEKKSTGIPSLKVKFNKVF 459 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GYF+EV S + + + + +QT+ N R+ T EL + E++I +A +E Sbjct: 460 GYFLEVPKSQSG------KVPESYTRKQTLVNSERYITPELKEFEDKILSANEKIQSLEK 513 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 F + + ++ + L +A+ V++ ID +L+++A++ NYCRP + + + RH Sbjct: 514 ALFLCVCSQLMNSLQRLKDAAIVLSEIDALQSLSLVARKYNYCRPRFSVDGSARISNSRH 573 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 PIVE+ + F ND + +S +++TGPNM GKSTF+RQ AL+ IMAQM Sbjct: 574 PIVERFVPD-----FTPNDISMD-----SSENFFIVTGPNMSGKSTFIRQVALLSIMAQM 623 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS++PA A + I D++F+R+G+ D LASG+STF+VEM+ETA+IL++AT S VILDE+G Sbjct: 624 GSFIPAKDAMLPIYDRVFTRIGARDELASGKSTFLVEMMETATILSKATEDSLVILDEVG 683 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGT+T DG+SIAWA E+++E C + ATHF ELT+LS N T ++ ++ +GI Sbjct: 684 RGTSTFDGISIAWAVSEFIYEAIGCHTIFATHFTELTELSSMYPGIKNKTARIVETEKGI 743 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 IFLHKVI G+A+ S+GI+V KLAG+P TV+SRA +IL+ K Sbjct: 744 IFLHKVINGVANSSHGIEVAKLAGVPETVLSRAKEILRVISK 785 >gi|255536512|ref|YP_003096883.1| DNA mismatch repair protein MutS [Flavobacteriaceae bacterium 3519-10] gi|255342708|gb|ACU08821.1| DNA mismatch repair protein MutS [Flavobacteriaceae bacterium 3519-10] Length = 868 Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust. Identities = 307/829 (37%), Positives = 486/829 (58%), Gaps = 45/829 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TP+M QY IK+ PD+L+ +R+GDFYE F DA+ ++ LGI LT+R G I Sbjct: 11 KKETPLMTQYNTIKAKYPDALLLFRVGDFYETFGSDAVRTAQILGIVLTRRANGEGH-IE 69 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 + G P H+ + Y+ KL++ G R+AIC+Q+E P K K +V+R V LVTPG + Sbjct: 70 LAGFPHHSIDSYLPKLVRAGLRVAICDQLEDP----KTVAKGIVKRGVTELVTPGVTFNE 125 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK 202 Q+LS +N+L++V + + ++ +A +D+STG F +S N ++L+ + DP EII+ Sbjct: 126 QVLSSKKNNFLLSVHKEKEKFGMALVDVSTGEFLVSEGNLEKLLHIVHTFDPSEIIYQRS 185 Query: 203 -EL-SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTA 259 EL S + KS F+ L + A F H+ + ++ +++ ++ FG ++ A Sbjct: 186 TELPSQLKNKSSFK-LEDWA-------FQHNYAYEKLTNHFRTASLKGFGIEEYKLGIVA 237 Query: 260 AAAAISYIKKT------QMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 A A +Y+ + Q + K I +ED L +D+ NLEI+ S + +S Sbjct: 238 AGAIFAYLVEDTHHALLQHITK--IKLIPQEDY---LMMDNFTLRNLEIVYP-SNPQGKS 291 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL ID + T GGRL R+ PL +IN RL I FF + L IQ++LKS D Sbjct: 292 LLDIIDKTSTPMGGRLLRRRLILPLKSVDEINRRLSLIEFFNKEDHLKYEIQQLLKSVSD 351 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R + +L + PK++ +R + + I NL K D E+ ++ L L + L + Sbjct: 352 LDRLMGKLASEKICPKEVGYLRQSLVNIHQIKNLLHKFD---EVFAWLDPLNDL-EELIR 407 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + L+D+LP G +++G LD R L+ + K + + + T I +LKI Sbjct: 408 YLQNYLNDELPVNIAKGNVIKEGISEELDHLRGLQRKGKNFLDEMCERETARTGISSLKI 467 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 NN GYFIEV ++ + D +I +QT+ N R+ T EL + E +I A Sbjct: 468 SFNNVFGYFIEVRNTHKDKVPTD------WIRKQTLVNAERYITEELKEYEEQILGAEEK 521 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 IE E + + + ++ +S+ + S++I+ +D + L+ LA ++Y RP++++S Sbjct: 522 ISKIEHELYRKVCDNVMVYIDSIQDNSKIISELDCGVGLSELAVSESYTRPVLNDSFEIS 581 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +K+ RHPI+E L + +I ND L DK+S ++ ++TGPNM GKS LRQ A+I Sbjct: 582 LKEARHPIIENALPL--GEKYIPNDLFL----DKDSQQIIMVTGPNMAGKSAILRQTAII 635 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MAQ+GS+VPA YA IGI+DK+F+RVG++DN+++G STFMVEM E A+ILN +++S + Sbjct: 636 CLMAQVGSFVPAKYAEIGILDKIFTRVGASDNISAGESTFMVEMNEAANILNNISDRSLI 695 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHE-TNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 +LDEIGRGT+T DG+SIAWA EYLH+ + + L ATH+HEL +++ + +R N + + Sbjct: 696 LLDEIGRGTSTYDGVSIAWAIAEYLHQHPTQAKTLFATHYHELNEMTVNFERIKNFHVSI 755 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 ++ IIF+ K++PG ++HS+GI V KLAG+P V++RA ++LKT EK Sbjct: 756 QENKGNIIFMRKLLPGGSEHSFGIHVAKLAGMPAKVVNRANEVLKTLEK 804 >gi|107028732|ref|YP_625827.1| DNA mismatch repair protein [Burkholderia cenocepacia AU 1054] gi|122977738|sp|Q1BHQ1|MUTS_BURCA RecName: Full=DNA mismatch repair protein mutS gi|105897896|gb|ABF80854.1| DNA mismatch repair protein MutS [Burkholderia cenocepacia AU 1054] Length = 885 Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust. Identities = 309/903 (34%), Positives = 461/903 (51%), Gaps = 60/903 (6%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E TPMM+QY+ IK+ +PD+LVFYRMGDFYELFF+DA A+R L +TLT+RG G Sbjct: 7 EAFAGHTPMMQQYLRIKADHPDTLVFYRMGDFYELFFEDAEKAARLLDLTLTQRGASAGT 66 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 I M GVP H Y+ KL+K+G +AICEQI P +K V R VVR+VTPGTL Sbjct: 67 PIKMAGVPHHAVEQYLAKLVKMGESVAICEQIGDPAT-----SKGPVERKVVRVVTPGTL 121 Query: 140 TEDQLLSPTDSNYLMAVAR------IRTEWAIAWIDISTGIFKISTSNHDRLISDIMRID 193 T+ LLS + YL+A+ + +AW+++++G +++ D+L + + RI Sbjct: 122 TDAALLSDKNDVYLLAMCTGHNKRGVAVNIGLAWLNLASGALRLAEIEPDQLAAALERIR 181 Query: 194 PREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS 253 P EI+ + + P FD + R+ D ++ ++D FG+ S Sbjct: 182 PAEILTPDGA------TDAIPAGAGASKRVPAWHFDIASGTQRLCDQLDVASLDGFGAHS 235 Query: 254 QVEKTAAAAAISYIKK-TQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 AA A+ TQ + + E+ + +D A R NLE+ TL G+ Sbjct: 236 LTSACGAAGALLLYAAATQGQQLRHVRSLKVENETEYIGLDPATRRNLELTETLRGTESP 295 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPI--LINPIQKILKS 370 +L +D T G RL + P S +R +I + P ++ ++ L+ Sbjct: 296 TLYSLLDTCCTTMGSRLLRHWLHHPPRASVAAQSRQQAIGALLDAPANASLDALRSALRQ 355 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGI--------RSGINILNLFLKNDLPEELRGAVE 422 DV R RL + P+D++ +RD R G + N + V+ Sbjct: 356 IADVERITGRLALLSARPRDLSSLRDTFAALPALRERIGAIVAN--------ADALARVD 407 Query: 423 KLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 P L+S ++ + RDGG + G DA LDE R + + + + L+ + Sbjct: 408 AALAPPAECLDLLTSAIAPEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLEARE 467 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 T I NL++++N G++IEVT + D + RQT+ N R+ T EL Sbjct: 468 RARTGIANLRVEYNKVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKT 521 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E++ +A AL E ++ + A++ + A +D+ A A A+ ++ Sbjct: 522 FEDKALSAQERALARERALYDSVLQALLPFIPECQRVASAPAELDLLAAFAERARALDWV 581 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + ++ GRHP+VE ++Q FIANDC KL L+TGPNMGG Sbjct: 582 APTFTDEIGIEIEQGRHPVVEAQVEQ-----FIANDCRFG-----TERKLLLITGPNMGG 631 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KSTF+RQ ALI +MA +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+ Sbjct: 632 KSTFMRQTALIALMAYVGSYVPAKSACFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAA 691 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 ILN AT QS V++DEIGRGT+T DGL++AWA +L N C L ATH+ ELT L Sbjct: 692 ILNDATPQSLVLMDEIGRGTSTFDGLALAWAIARHLLAHNACYTLFATHYFELTQLPAEF 751 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + GI+FLH V G A+ SYG+QV +LAG+P VI A L E+ Sbjct: 752 PQAANVHLSAVEHGHGIVFLHAVNEGPANQSYGLQVAQLAGVPAPVIRAARKHLAYLEQQ 811 Query: 843 ---YHHNQKDMRLYYP----EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 H Q D+ P +++ ++ L +EK++ ++ D++ P AL LY Sbjct: 812 SASQHTPQLDLFSAPPAAVDDLECADAP-ALPDTPHPALEKLRDIDPDDLKPREALDLLY 870 Query: 896 AVK 898 ++ Sbjct: 871 ELR 873 >gi|86141815|ref|ZP_01060339.1| putative DNA mismatch repair protein MutS [Leeuwenhoekiella blandensis MED217] gi|85831378|gb|EAQ49834.1| putative DNA mismatch repair protein MutS [Leeuwenhoekiella blandensis MED217] Length = 875 Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust. Identities = 314/883 (35%), Positives = 498/883 (56%), Gaps = 34/883 (3%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 KS TP+M+QY IK+ PD+L+ +R+GDFYE F +DA+ A+ LGI LT R + Sbjct: 8 KSVTPLMKQYNSIKAKYPDALLLFRVGDFYETFGEDAVKAAGILGIILTNRNNG-SERTE 66 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 + G P H+ N Y+ KL+K G R+AIC+Q+E P + KS+V+R V LVTPG D Sbjct: 67 LAGFPHHSLNTYLPKLVKAGCRVAICDQLEDP-----KQTKSIVKRGVTELVTPGVSLND 121 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK 202 ++L +N+L A+ + ++++D+STG F + + + + +P E++ S+ Sbjct: 122 EVLHSKSNNFLGAIHYGKRLLGLSFLDVSTGEFLTTQGDVAYIDKLLQNFNPSELLVSKS 181 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK--TAA 260 + +K F T ++ + VF ES + +++ ++ FG +E+ AA Sbjct: 182 Q--KTAFKEDFGTDFHLFFQEDWVFKPDYAHES-LNKHFDTKSLKGFG-IEHLEEGIIAA 237 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 AA+ Y+ +TQ I R + +++D NLE+ + S ++ +LL ID Sbjct: 238 GAALHYLSETQHNKLQHISSIGRIAEDAYVWLDRFTIRNLELYQGTS-AKAITLLDVIDK 296 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 +I+ GGRL +A PL I R + F I + I +K DV R +S+ Sbjct: 297 TISPMGGRLLKRWLALPLKTLETIKERHAIVEFIINHTDFHEKIATHIKKIGDVERLISK 356 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + G+ P++I ++++ + + I + +L +N + L+ EK+ L + L + ++ Sbjct: 357 VATGKVSPREIILLKNSLEAMIPVKSL-AENADNKALQILGEKINNL-EHLRTKIKETIN 414 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 +D P G + G + LDE R+L K + + + E+T I +LKI NN G Sbjct: 415 EDAPVNVLKGNSIASGFNQELDELRNLATSGKDYLDKMLERETEQTGITSLKIASNNVFG 474 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IEV ++ KD + + +I +QT+ N R+ T EL + E +I A L IE + Sbjct: 475 YYIEVRNTH-----KD-KVPESWIRKQTLVNAERYITDELKEYEAKILGAEERILTIEQQ 528 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F L I + E + + +IA +D + A LA+E NYCRP +D+S + +GRHP Sbjct: 529 LFAELVTWITQFIEPVQTNAYIIAQLDCLRSYATLAQENNYCRPELDDSFELEITEGRHP 588 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 ++EK L S+P+IAND L D++S ++ ++TGPNM GKS LRQ ALIV++AQMG Sbjct: 589 VIEKQLP--ISEPYIANDTYL----DRDSQQMIMITGPNMSGKSAILRQTALIVLLAQMG 642 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA A IGIVD++F+RVG++DN++ G STFMVEM ETASILN + +S V+LDEIGR Sbjct: 643 SFVPAQAARIGIVDRIFTRVGASDNISMGESTFMVEMNETASILNNISERSLVLLDEIGR 702 Query: 741 GTATLDGLSIAWATIEYLHE-TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 GT+T DG+SIAWA EYLHE R + L ATH+HEL D+ ++ R N + V + + + Sbjct: 703 GTSTYDGISIAWAISEYLHEHPARPKTLFATHYHELNDMGETFSRIKNYNVSVKELKDNV 762 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 +FL K+IPG + HS+GI V K+AG+P V+ RA +L EK + +++ + + + Sbjct: 763 LFLRKLIPGGSAHSFGIHVAKMAGMPQQVLHRANKMLAQLEK--SNRKEEQKAALNQAED 820 Query: 860 KESKNNLSKNDKLFVEKIK----CLNLDEMSPLTALKTLYAVK 898 E + + D +E+IK ++D ++P+ AL L +K Sbjct: 821 DEMQLSFFNLDDPLLEEIKEEIIHTDIDTLTPVEALMKLNEIK 863 >gi|319953643|ref|YP_004164910.1| DNA mismatch repair protein muts [Cellulophaga algicola DSM 14237] gi|319422303|gb|ADV49412.1| DNA mismatch repair protein MutS [Cellulophaga algicola DSM 14237] Length = 870 Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust. Identities = 316/882 (35%), Positives = 487/882 (55%), Gaps = 33/882 (3%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TP+M QY IK PD+L+ +R+GDFYE F DDA+ AS+ LGITLT R G+ Sbjct: 7 KKVTPLMNQYNTIKKKYPDALLLFRVGDFYETFGDDAIRASQILGITLTHRNNG-GEKTE 65 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 + G P H+ N Y+ KL+K G R+AIC+Q+E P + K++V+R V LVTPG D Sbjct: 66 LAGFPHHSVNTYLPKLVKAGLRVAICDQLEDP-----KQTKTIVKRGVTELVTPGVAFND 120 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK 202 +LS +N+L AV R +A++DISTG F S D++ + P EI+ S+ Sbjct: 121 DILSAKSNNFLAAVHFGRKGIGVAFLDISTGEFLTSEGTDDQVDKLLQNFAPNEILVSK- 179 Query: 203 ELSHA-EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAA 260 SH E++ F + + VF D E+ + +++ ++ FG + TAA Sbjct: 180 --SHKKEFQETFGKQFHTFFMEDWVFQDDYALET-LTNHFKTKSLKGFGVDHLSLGITAA 236 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 + Y+ +TQ I ER + +++D NLE+ + S +LL ID Sbjct: 237 GVTLHYLTETQHRKLQHISKLERIAEEEHIWMDRFTIRNLELYHA-NNSNAITLLDIIDK 295 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 +I+ GGR+ +A PL + KI R + +++ N Q +K D+ R +S+ Sbjct: 296 TISPMGGRMLKRWLALPLKNVEKIKRRHEVVSYLKANEPTHAKFQNHIKQIGDLERLISK 355 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + G+ PK++ +++ + + + I L +++ E ++ ++L L + M+ Sbjct: 356 VATGKINPKEVIQLKNSLEAIVPIKQLCIQSK-NEAVKFIGDQLHAC-DLLRSKIKEMIH 413 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 ++ P G + G LDE R L K + + + E T I +LKI NN G Sbjct: 414 EEAPVNMLKGSTIAKGYSEELDELRGLAFSGKDYLNKMLARETERTGISSLKIASNNVFG 473 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IEV ++ KD + + +I +QT+ N R+ T EL + E +I A L +E E Sbjct: 474 YYIEVRNTH-----KD-KVPEEWIRKQTLVNAERYITEELKEYEGKILGAEERILSLEQE 527 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F L + E + N + IA +D LAKE NY P I+++T +K+GRHP Sbjct: 528 LFSQLIMWMQEYIAPVQNNAYQIAQLDCLCGFTQLAKENNYVLPSINDTTEIEIKNGRHP 587 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 ++EK L + +IAND L ++ ++ ++TGPNM GKS LRQ ALIV++AQMG Sbjct: 588 VIEKQLPL--GEIYIANDVVL----NREEQQIIMITGPNMSGKSAILRQTALIVLLAQMG 641 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA A IG VDK+F+RVG++DN++ G STFMVEM ETASILN + +S V+LDEIGR Sbjct: 642 SFVPAESAKIGFVDKIFTRVGASDNISMGESTFMVEMNETASILNNLSERSLVLLDEIGR 701 Query: 741 GTATLDGLSIAWATIEYLHE-TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 GT+T DG+SIAWA EYLHE R + L ATH+HE+ +++ + +R N + V + + + Sbjct: 702 GTSTYDGISIAWAISEYLHEHPARAKTLFATHYHEINEMATTFERIKNYNVSVKELKDNV 761 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 +FL K+ PG ++HS+GI V K+AG+P VI++A ILK EK + + +L + Sbjct: 762 LFLRKLTPGGSEHSFGIHVAKMAGMPQQVIAKANKILKKLEKSHSSEELTGKLKDAHEEM 821 Query: 860 KESKNNLSKNDKLFV---EKIKCLNLDEMSPLTALKTLYAVK 898 + S NL +D L E+I L+++ ++P+ AL L +K Sbjct: 822 QLSFFNL--DDPLLQQIKEEITHLDINTLTPVEALMKLNEIK 861 >gi|322435849|ref|YP_004218061.1| DNA mismatch repair protein MutS [Acidobacterium sp. MP5ACTX9] gi|321163576|gb|ADW69281.1| DNA mismatch repair protein MutS [Acidobacterium sp. MP5ACTX9] Length = 902 Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust. Identities = 305/906 (33%), Positives = 480/906 (52%), Gaps = 75/906 (8%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+MRQY K +PD L+F R+GDFYELF++DA+L SR L +TLT R K K PMCG Sbjct: 12 TPVMRQYFAAKEAHPDCLMFCRIGDFYELFYEDAILVSRELQLTLTARDKE--KKQPMCG 69 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+Q+L++ G+RIA+CEQ+E P + K +V+R V R++TPGT D L Sbjct: 70 VPYHAAEVYLQRLLRKGYRIALCEQMEDP-----KTVKGIVKREVTRVLTPGTAV-DPAL 123 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFK----ISTSNHDRLISDIMRIDPREIIFSE 201 +S +L +V ++ +A +D+STG F+ + + ++ R+ P E++++ Sbjct: 124 GAGESCWLASVVMVKGVAGVAMVDLSTGEFRATEFVGAGAWALAVDELGRVKPAELVYAS 183 Query: 202 KELSHAEYKSLFETLG----NVAVAQPNVFFDHSISESRIADYYNITTVDTFGSF----- 252 L A + LG V A P S+ +S A I T + Sbjct: 184 GGLLGASGSNRSLKLGADPTQVPEAGPGA--PSSVDDSDGAGLDGIKTKSAVEDWVMTAE 241 Query: 253 ----------------------SQVEKTAAAAAISYI---KKTQMVNKPTIGYPEREDIQ 287 + AA + Y+ K+ + + + + ER Sbjct: 242 HALPLLRSHFRVLSLDGLGLGGHEAAGVAAGGLLHYLRQQKQGALEHVEAVRFYER---S 298 Query: 288 STLFIDSAARSNLEILRTL-SG-SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKIN 345 L +D+ + NLE++ L SG S + +LL T+D T G RL + P +I Sbjct: 299 GCLELDAVSVRNLELVEPLFSGESAQTTLLYTLDACCTPMGKRLLRATLLRPAMGLGEIE 358 Query: 346 TRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDI---AVIRDGIRSGI 402 RLD++ + +++ + D+ R L R+ + P+++ A + + Sbjct: 359 VRLDAVGEAAADLRRREGVRRAMNGLLDLERLLGRVAMDSAGPREVLALASTLGCVPRVV 418 Query: 403 NILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLD 462 + +F EL ++ L + L + +++ + D+ P DGG +R G A LD Sbjct: 419 AAVGMFTAAKW-MELGAGLDPL----EDLHEVITATIVDEPPVTFADGGVIRAGIHAELD 473 Query: 463 ETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDR 522 E R L ++ + +++ + T I +LK++ N+ GY++EVT ++A + D E K Sbjct: 474 ELRELSRSGRQALVAIEERERARTGIGSLKVRFNSVFGYYLEVTKANAKAVPADYERK-- 531 Query: 523 FIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQV 582 QT+ N RFTT EL + E +I A +L IE F L ++ + + ++ Sbjct: 532 ----QTLVNAERFTTPELKEYEAKILTAQERSLEIERRLFSELRAQLLAAAGRMRETARK 587 Query: 583 IAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLS 642 +A ID+ A LA + + RP+++ GRHP+VE+ +++ + F+ N L Sbjct: 588 VAEIDLMSCFAHLAALRGWVRPVVEEGCALEFVQGRHPVVERRMEESGAGRFVPNSLYL- 646 Query: 643 CPNDKNSG-KLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVG 701 D ++G L L+TGPNMGGKST+LR AL+V+MAQ G +VPA +G+VD++++R+G Sbjct: 647 ---DADAGPSLLLMTGPNMGGKSTYLRMAALLVVMAQCGCFVPAERMRVGLVDRIYTRIG 703 Query: 702 SADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHET 761 ++DN+A GRSTFMVEM ETA+ILN ATN+S V+LDE+GRGTAT DGLS+AWAT+E+LH Sbjct: 704 ASDNVARGRSTFMVEMTETAAILNTATNKSLVLLDEMGRGTATYDGLSLAWATVEHLHNK 763 Query: 762 NRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKL 821 R L ATH+HELT L+ L + N + V ++ GI+FLH V G A SYGI+V +L Sbjct: 764 IGARALFATHYHELTLLADRLTKLKNVRVTVKENAGGIVFLHSVEAGAASKSYGIEVARL 823 Query: 822 AGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLN 881 AGLPN VI+RA ++LK E+ + +R E K + + V+++ + Sbjct: 824 AGLPNGVIARAREVLKVHER---AESQQVREAVAEPAGKVQMTLFTPLSQRIVDRLGAVE 880 Query: 882 LDEMSP 887 +D ++P Sbjct: 881 VDSLTP 886 >gi|301027145|ref|ZP_07190514.1| DNA mismatch repair protein MutS [Escherichia coli MS 69-1] gi|300395177|gb|EFJ78715.1| DNA mismatch repair protein MutS [Escherichia coli MS 69-1] Length = 853 Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust. Identities = 312/889 (35%), Positives = 490/889 (55%), Gaps = 51/889 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E + AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---NFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R L+RL + P+D+A +R + + L L+N ++ EK+ + + L Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ-LPELRAQLENVDSAPVQALREKMGEFAE-LRD 405 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + D P RDGG + G + LDE R+L D + + L+++ E T + LK+ Sbjct: 406 LLERAIIDTPPVLVRDGGVIAPGYNEELDEWRALADGATDYLERLEVRERERTGLDTLKV 465 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + Sbjct: 466 GFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKEYEDKVLTSKGK 519 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY P + Sbjct: 520 ALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFIDKPGIR 579 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 580 ITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTALI 630 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V Sbjct: 631 ALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLV 690 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L Sbjct: 691 LMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH---NQKDM 850 + + I F+H V G A SYG+ V LAG+P VI RA L+ E + + Q D Sbjct: 751 EHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESISPNAAATQVD- 809 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 810 -------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|187928086|ref|YP_001898573.1| DNA mismatch repair protein MutS [Ralstonia pickettii 12J] gi|238691797|sp|B2U9E4|MUTS_RALPJ RecName: Full=DNA mismatch repair protein mutS gi|187724976|gb|ACD26141.1| DNA mismatch repair protein MutS [Ralstonia pickettii 12J] Length = 882 Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust. Identities = 318/906 (35%), Positives = 476/906 (52%), Gaps = 83/906 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ +KS +P++LVFYRMGDFYELFF+DA ASR L ITLT RG G I M G Sbjct: 22 TPMMQQYLRLKSGHPNTLVFYRMGDFYELFFEDAEKASRLLDITLTARGSSNGHPIRMAG 81 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H A Y+ KL+K+G +AICEQI P AK V R VVR+VTPGTLT+ LL Sbjct: 82 IPFHAAEQYLAKLVKLGESVAICEQIGDPATAK-----GPVERKVVRVVTPGTLTDAALL 136 Query: 146 SPTDSNYLMAVARIRTEWA------IAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 S +N+L+A+A + + +AW+++ G ++ + D+L ++ RI P E++ Sbjct: 137 SDKINNHLLAIAHLPAKRGAAPLIGLAWLNLVGGELRVMECSPDQLDRELERIRPAEVLA 196 Query: 200 SEKELSHAEYKSLFETLGNVAVAQ---PNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 + L+ + V VA+ P+ FD R+ + + ++ FG+ + Sbjct: 197 DDATLNTIQ----------VDVARTRLPDWHFDVEAGTRRLREQLGVASLVAFGAETLTA 246 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTL-----FI--DSAARSNLEILRTLSGS 309 AAA A+ T G R I T+ FI D+A R NLE+ TL G Sbjct: 247 ALAAAGALLNYAAA------TQGQSLRHVIGLTVEHESEFIGLDTATRRNLELTETLRGQ 300 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 +L +D T G RL + PL D R +I + ++ L+ Sbjct: 301 ESPTLFSLLDTCATSMGSRLLRHWLHHPLRDRAIPQARQQAIEVLLGGDW--QTLRSTLR 358 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--------ELRGAV 421 + DV R RL + P+D++ +RD + I + +LP+ EL A+ Sbjct: 359 TLSDVERITGRLALLSARPRDLSSLRDTLARLPEI-----REELPQSDAAPLLIELYAAL 413 Query: 422 EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLK 481 LP+ L + + RDGG + G DA LDE R + + + + L+ + Sbjct: 414 ----TLPEDAHALLQRAVMAEPAAMVRDGGVIARGYDADLDELRDISENCGQFLVDLEAR 469 Query: 482 YAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELI 541 E T I NL++++N G++IEVT+ A+ + D + RQT+ N R+ T EL Sbjct: 470 ERERTGIANLRVEYNRVHGFYIEVTNGQAAKVPDD------YRRRQTLKNAERYITPELK 523 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 E++ +A + AL E +E L ++ + +A D+ LA A ++ Sbjct: 524 AFEDKALSAQDRALSREKLLYEELLQKLLPHLAEFKRIAAALAQADVLATLAERAHALSW 583 Query: 602 CRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 RP + ++ + RHP+VE+ ++Q F+ANDC L + + KL L+TGPNMG Sbjct: 584 SRPTLTDAPGIELTRARHPVVEQQVEQ-----FVANDCML-----QEARKLLLITGPNMG 633 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKSTF+RQ AL+V++A +G++VPA A IG +D++F+R+G+AD+LA GRSTFMVEM E A Sbjct: 634 GKSTFMRQTALVVLLAYVGAFVPAEAAVIGPIDRIFTRIGAADDLAGGRSTFMVEMTEAA 693 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS 781 +IL++AT S V++DEIGRGT+T DGL++AWA +L NR L ATH+ ELT L + Sbjct: 694 AILHRATPNSLVLMDEIGRGTSTFDGLALAWAIARHLLSHNRSHTLFATHYFELTQLPQE 753 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 + N L + +GI+FLH V G A SYG+QV +LAG+P VI A L E+ Sbjct: 754 FAQAANVHLSAVEHGDGIVFLHAVQEGPASQSYGLQVAQLAGVPQPVIRAARKRLAWLEQ 813 Query: 842 LYHHN-------QKDMRLYYPEIQ-TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKT 893 H+ Q D+ ++ E + D + + ++ D+M+P AL Sbjct: 814 ---HSADTGATPQLDLFALAADMPIVDEGDADAETPDSALADALAGIDPDDMTPREALDA 870 Query: 894 LYAVKA 899 LY +KA Sbjct: 871 LYRLKA 876 >gi|91212095|ref|YP_542081.1| DNA mismatch repair protein MutS [Escherichia coli UTI89] gi|117624966|ref|YP_853954.1| DNA mismatch repair protein [Escherichia coli APEC O1] gi|218559724|ref|YP_002392637.1| DNA mismatch repair protein MutS [Escherichia coli S88] gi|237706641|ref|ZP_04537122.1| DNA mismatch repair protein mutS [Escherichia sp. 3_2_53FAA] gi|122422701|sp|Q1R7W4|MUTS_ECOUT RecName: Full=DNA mismatch repair protein mutS gi|166232121|sp|A1AES5|MUTS_ECOK1 RecName: Full=DNA mismatch repair protein mutS gi|226723056|sp|B7MKK5|MUTS_ECO45 RecName: Full=DNA mismatch repair protein mutS gi|91073669|gb|ABE08550.1| DNA mismatch repair protein MutS [Escherichia coli UTI89] gi|115514090|gb|ABJ02165.1| DNA mismatch repair protein MutS [Escherichia coli APEC O1] gi|218366493|emb|CAR04245.1| methyl-directed mismatch repair protein [Escherichia coli S88] gi|226899681|gb|EEH85940.1| DNA mismatch repair protein mutS [Escherichia sp. 3_2_53FAA] gi|294490962|gb|ADE89718.1| DNA mismatch repair protein MutS [Escherichia coli IHE3034] gi|307625695|gb|ADN69999.1| DNA mismatch repair protein MutS [Escherichia coli UM146] gi|315289268|gb|EFU48663.1| DNA mismatch repair protein MutS [Escherichia coli MS 110-3] gi|323951047|gb|EGB46923.1| DNA mismatch repair protein MutS [Escherichia coli H252] gi|323957054|gb|EGB52779.1| DNA mismatch repair protein MutS [Escherichia coli H263] Length = 853 Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust. Identities = 312/889 (35%), Positives = 489/889 (55%), Gaps = 51/889 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R L+RL + P+D+A +R + + L L+N ++ EK+ + + L Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ-LPELRAQLENVDSAPVQALREKMGEFAE-LRD 405 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + D P RDGG + G + LDE R+L D + + L+++ E T + LK+ Sbjct: 406 LLERAIIDTPPVLVRDGGVIATGYNEELDEWRALADGATDYLERLEVRERERTGLDTLKV 465 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + Sbjct: 466 GFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKEYEDKVLTSKGK 519 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY P + Sbjct: 520 ALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFIDKPGIR 579 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 580 ITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTALI 630 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V Sbjct: 631 ALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLV 690 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L Sbjct: 691 LMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH---NQKDM 850 + + I F+H V G A SYG+ V LAG+P VI RA L+ E + + Q D Sbjct: 751 EHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESISPNAAATQVD- 809 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 810 -------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|297588419|ref|ZP_06947062.1| DNA mismatch repair protein MutS [Finegoldia magna ATCC 53516] gi|297573792|gb|EFH92513.1| DNA mismatch repair protein MutS [Finegoldia magna ATCC 53516] Length = 859 Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust. Identities = 313/883 (35%), Positives = 497/883 (56%), Gaps = 52/883 (5%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S TPM++QY EIK N D ++F+R+GDFYE+FF+DALLAS+ L I LT+R + PM Sbjct: 2 SYTPMIKQYKEIKEQNKDCILFFRLGDFYEMFFEDALLASKELEIVLTQRDCGENQKCPM 61 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CG+P H ++ YI KL+ G+++AICEQ+E P + K LV+R ++++ TP T+ E++ Sbjct: 62 CGIPYHVSDVYINKLVSKGYKVAICEQLEDP-----KLVKGLVKRGIIKIYTPATVIENE 116 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI----SDIMRIDPREIIF 199 + NYLM++++ E AI++IDISTG + S D + ++I +I P+E+IF Sbjct: 117 NSDTGNFNYLMSISKKSNEVAISYIDISTGDVSYTNSTSDDIYKIIENEISKITPKEVIF 176 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 ++ E S +++ V N + D+ N + ++ S S+ Sbjct: 177 NDHEFSAKSLETIATKFSIVLTTINN--------STNALDFIN-SKIEYDNSNSETTNIC 227 Query: 260 AAAAISYIKKTQ----MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSL 314 A + Y+ + Q +N + Y I + IDS + NLEI + L + S+ SL Sbjct: 228 VANLLKYVFRYQGDLVHINSSSKYY-----INEFMEIDSNSVINLEIQKNLYTNSKNGSL 282 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 ++++ T G RL + PL D +I TR + ++ L+ ++ L D+ Sbjct: 283 FGVLNHTKTSMGSRLLHSYLERPLMDKEEILTRQSRVEEIFEDYELLVNLEDSLDGIYDL 342 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R +++L KD+ ++ I + L N +L G EKL L + Sbjct: 343 DRLIAKLSYKSANAKDLIALKVSIEKIPYLKTLLNCNKKNIQLIG--EKLDDLGD-IYDL 399 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + + DD P +G ++ LD+ R R K + ++ + IKNLKI Sbjct: 400 IDKSIVDDPPVTLTEGNLIKSNFSNELDQLRYNRVNGKNELVEYEMSEKDRLGIKNLKIV 459 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N LGYFI+VT S+ + + D E RQT++N +RF T +L +E++I ++ + Sbjct: 460 FNKKLGYFIDVTKSNLNKVGDDYE------KRQTLTNSSRFKTKQLEAIESKILDSEDEI 513 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 +E + FE + I++ + ++ +IAIID+S +LA A NY +P I+ V Sbjct: 514 FELEYKIFEDIRKIILKNLSRIKKSADLIAIIDVSNSLAKCAYLNNYIKPDINTYGLIDV 573 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGK--LWLLTGPNMGGKSTFLRQNAL 672 + RHPIVE ++ Q FI ND + SGK + L+TGPNM GKST+LRQ AL Sbjct: 574 LESRHPIVELSVGQSE---FITNDILIG------SGKNDIQLITGPNMSGKSTYLRQVAL 624 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 I I+ Q+GS+VPA+ A+I IVDK+F+R+GS+DNL G STFMVEM E ++I+ AT+ S Sbjct: 625 ICILNQIGSFVPATKANISIVDKIFTRIGSSDNLFKGESTFMVEMKEMSNIIKYATSNSL 684 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 ++LDEIGRGT+T DGLS+AWA +EY+ + + + L ATH+HELT+L K L N + + Sbjct: 685 LVLDEIGRGTSTFDGLSLAWAIVEYISKNIKAKTLFATHYHELTELEKKLDNLINMKVDI 744 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 ++N+ IIFL K+ G D SYGI+V +LAG+P ++I RA ILK +K + D+ + Sbjct: 745 KETNDSIIFLRKITRGSTDKSYGIEVAELAGMPKSLIKRAKSILKEIDK--EDTKIDLPI 802 Query: 853 YYPEIQTKES-KNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 + E+ +NN+S+ + F ++I+ +N++E++PL +L+ L Sbjct: 803 ADFAVPNDENDENNISELEN-FKDEIQNININEITPLQSLQLL 844 >gi|296104417|ref|YP_003614563.1| DNA mismatch repair protein MutS [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058876|gb|ADF63614.1| DNA mismatch repair protein MutS [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 853 Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust. Identities = 308/903 (34%), Positives = 483/903 (53%), Gaps = 79/903 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPHHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAALWQDGKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE +L E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-ALIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLIG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y+K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYVKDTQRTALPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGVENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q +L+ D Sbjct: 291 LASVLDNTVTPMGSRMLKRWLHMPVRDTDTLVCRQQTIAALQDR---YTELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP-QSLE 432 + R L+RL + P+D+A +R + LPE LR + + P Q L Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLSDVDSAPVQKLR 394 Query: 433 KTLSSM----------LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 +T+ + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 ETMGEFAELRELLERAIIDAPPVLVRDGGVIAPGYNEELDEWRALADGATDYLDKLEIRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E + LK+ +N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERLGLDTLKVGYNAVHGYYIQISRGQSHL------APIHYVRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + ++ L + ++ L ++ +A +D+ + LA A+ NY Sbjct: 509 YEDKVLTSKGKALALEKQLYDELFDMLMPHLADLQLSAGALAELDVLVNLAERAETLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L ++PFIAN LS ++ ++TGPNMGG Sbjct: 569 CPTFTDKPGIRITEGRHPVVEQVL----NEPFIANPLSLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQTALIALLAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DE+GRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATEHSLVLMDEVGRGTSTYDGLSLAWACAENLANKIKAMTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E L Sbjct: 740 EGVANVHLDALEHGDTIAFMHTVQEGAASKSYGLAVAALAGVPKEVIKRARQKLRELESL 799 Query: 843 YHH------NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYA 896 + + M L P +T + VE ++ L+ D ++P AL+ +Y Sbjct: 800 SPNAAATQIDGTQMSLLAPAEETSPA-----------VEALENLDPDSLTPRQALEWIYR 848 Query: 897 VKA 899 +K+ Sbjct: 849 LKS 851 >gi|325496216|gb|EGC94075.1| DNA mismatch repair protein MutS [Escherichia fergusonii ECD227] Length = 853 Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust. Identities = 312/889 (35%), Positives = 488/889 (54%), Gaps = 51/889 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGV-LQD--FTTELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R L+RL + P+D+A +R + + L L+N ++ EK+ + + L Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ-LPELRAQLENVDSAPVQALREKMGEFAE-LRD 405 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + D P RDGG + G + LDE R+L D + + L+++ E T + LK+ Sbjct: 406 LLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERERTGLDTLKV 465 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + Sbjct: 466 GFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKEYEDKVLTSKGK 519 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY P + Sbjct: 520 ALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFIDKPGIR 579 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 580 ITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTALI 630 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V Sbjct: 631 ALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLV 690 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L Sbjct: 691 LMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH---NQKDM 850 + + I F+H V G A SYG+ V LAG+P VI RA L+ E + + Q D Sbjct: 751 EHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESISPNAAATQVD- 809 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 T+ S + + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 810 -------GTQMSLLSAPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|303326773|ref|ZP_07357215.1| DNA mismatch repair protein MutS [Desulfovibrio sp. 3_1_syn3] gi|302862761|gb|EFL85693.1| DNA mismatch repair protein MutS [Desulfovibrio sp. 3_1_syn3] Length = 913 Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust. Identities = 318/923 (34%), Positives = 486/923 (52%), Gaps = 59/923 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM QY+ IK+ PD+L+FYRMGDFYELFFDDA+ A+R L I LT R K +PMCG Sbjct: 9 TPMFEQYMHIKADYPDALLFYRMGDFYELFFDDAVTAARELQIALTSRSKDSENPVPMCG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H Y+ +LI G +AIC+Q E P + K LV+R V ++TPGT+ ED L Sbjct: 69 VPWHAVQSYVAQLIDKGFHVAICDQTEDP-----KAAKGLVKRAVTCVITPGTVLEDANL 123 Query: 146 SPTDSNYLMAVA--RIRTEWAIAWIDISTGIFK-ISTSNHDRLISDIMRIDPREIIFSEK 202 + NYL A+ + AW DISTG + + L ++ PRE++ E Sbjct: 124 NTKSHNYLGALCYDTGQGRGGFAWADISTGQWSGVEFKRQAELWQWAQKLAPRELLVPEG 183 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE-KTAAA 261 L + L E G V P FD + R + G + E + Sbjct: 184 -LEMPPH-CLLE--GVRMVRMPAAHFDLKRATERTLRAQGVQEAGALGLQGKNELMRSCG 239 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK-TIDY 320 A + Y+ +TQ + + + D+ L ID NLEI L+G + + L+ +D Sbjct: 240 ALLVYLDQTQKRDPDHLMPFKPLDLSRRLLIDEVTERNLEIFTRLNGRKGKGTLRHVLDD 299 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 ++T GGR + + P ++ I +++ FF + +++ L+ D+ R +R Sbjct: 300 TMTPMGGRFLEDMLRHPWREAGPIARIQEAVAFFHDDDNRRAALREALREVYDLERLSTR 359 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLF--------------LKNDLPEELRGAVEKLKK 426 + + RG P+D +R+ + + + N L ++LP+ L V+ Sbjct: 360 ISLNRGGPRDFIALRNSLAALPKVHNALITSTNGSYATEAQSLGHELPQSLYQIVKTWDH 419 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 L + LS+ L D PT DGG + G +A LD+ L + ++ + L + ++T Sbjct: 420 L-EDCTTLLSAALVDSPPTVITDGGLFKSGYNAELDKLLDLVEHGEQKLQELLEEEQKKT 478 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 I LK+ +N GY+ EVT +S S + FI RQT++N RFTT++L +LE Sbjct: 479 GIAKLKMGYNRVFGYYYEVTRASHSG-----PMPEHFIRRQTLANAERFTTVQLKELEEE 533 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 + +A + +E + F+ L + Q E + + + ++A +D +LA + ++ N+CRP + Sbjct: 534 LLSAADKRKSLEYKMFQDLREHMARQRERIVHMADLVAQLDYWQSLAQVGRQNNWCRPRL 593 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 +S + +++GRHP+VE L S F+ N+ L +L LLTGPNM GKST Sbjct: 594 TDSAHLDIREGRHPVVEGML---GSANFVPNNFRLD-----QKRRLCLLTGPNMAGKSTV 645 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 LRQ A+I ++AQMGS VPA+ A +G+VD+LFSRVG++DNLA G+STFMVEM+ETA IL Q Sbjct: 646 LRQVAIICLLAQMGSMVPAAEATLGLVDRLFSRVGASDNLAQGQSTFMVEMMETARILRQ 705 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYL--HETNRCRGLLATHFHELTDLSKSLKR 784 AT +S VILDEIGRGT+T DG+++AWA +E L R L ATH+HELT L + Sbjct: 706 ATRRSLVILDEIGRGTSTYDGVALAWAVVEDLARRAGGELRTLFATHYHELTALEGRIPG 765 Query: 785 FHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYH 844 + + + N I+FLHK++PG +D SYG++V +LAG+P V+ RA IL E+ Sbjct: 766 VFTMNIAIREYNNDILFLHKLVPGPSDRSYGVEVARLAGVPVPVVQRARTILAGLERGRE 825 Query: 845 HNQKDM---RLYYPEIQTKESKNNLSKN-----------DKLFVEKIKCLNLDEMSPLTA 890 ++K + + P + ++K + + V + L + +SPL A Sbjct: 826 GSRKAVSVASMSLPGLDLPKAKTEADADLPEINATPPAAEHPLVRLLYDLTPETLSPLDA 885 Query: 891 LKTLYAVKA-WTLEKYSTDEDSE 912 LK L K+ W E + +D + Sbjct: 886 LKLLMEWKSLWGTEPNTDADDGD 908 >gi|218547749|ref|YP_002381540.1| DNA mismatch repair protein MutS [Escherichia fergusonii ATCC 35469] gi|218706228|ref|YP_002413747.1| DNA mismatch repair protein MutS [Escherichia coli UMN026] gi|293406226|ref|ZP_06650152.1| DNA mismatch repair protein mutS [Escherichia coli FVEC1412] gi|298381963|ref|ZP_06991560.1| DNA mismatch repair protein mutS [Escherichia coli FVEC1302] gi|300899975|ref|ZP_07118178.1| DNA mismatch repair protein MutS [Escherichia coli MS 198-1] gi|331664290|ref|ZP_08365196.1| DNA mismatch repair protein MutS [Escherichia coli TA143] gi|331674243|ref|ZP_08375003.1| DNA mismatch repair protein MutS [Escherichia coli TA280] gi|226723059|sp|B7N6W4|MUTS_ECOLU RecName: Full=DNA mismatch repair protein mutS gi|226723062|sp|B7LWH8|MUTS_ESCF3 RecName: Full=DNA mismatch repair protein mutS gi|218355290|emb|CAQ87897.1| methyl-directed mismatch repair protein [Escherichia fergusonii ATCC 35469] gi|218433325|emb|CAR14225.1| methyl-directed mismatch repair protein [Escherichia coli UMN026] gi|284922670|emb|CBG35758.1| DNA mismatch repair protein [Escherichia coli 042] gi|291426232|gb|EFE99264.1| DNA mismatch repair protein mutS [Escherichia coli FVEC1412] gi|298277103|gb|EFI18619.1| DNA mismatch repair protein mutS [Escherichia coli FVEC1302] gi|300356484|gb|EFJ72354.1| DNA mismatch repair protein MutS [Escherichia coli MS 198-1] gi|331058221|gb|EGI30202.1| DNA mismatch repair protein MutS [Escherichia coli TA143] gi|331068337|gb|EGI39732.1| DNA mismatch repair protein MutS [Escherichia coli TA280] Length = 853 Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust. Identities = 312/889 (35%), Positives = 489/889 (55%), Gaps = 51/889 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R L+RL + P+D+A +R + + L L+N ++ EK+ + + L Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ-LPELRAQLENVDSAPVQALREKMGEFAE-LRD 405 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + D P RDGG + G + LDE R+L D + + L+++ E T + LK+ Sbjct: 406 LLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERERTGLDTLKV 465 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + Sbjct: 466 GFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKEYEDKVLTSKGK 519 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY P + Sbjct: 520 ALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFIDKPGIR 579 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 580 ITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTALI 630 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V Sbjct: 631 ALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLV 690 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L Sbjct: 691 LMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH---NQKDM 850 + + I F+H V G A SYG+ V LAG+P VI RA L+ E + + Q D Sbjct: 751 EHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESISPNAAATQVD- 809 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 810 -------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|257452893|ref|ZP_05618192.1| DNA mismatch repair protein MutS [Fusobacterium sp. 3_1_5R] gi|317059435|ref|ZP_07923920.1| DNA mismatch repair protein mutS [Fusobacterium sp. 3_1_5R] gi|313685111|gb|EFS21946.1| DNA mismatch repair protein mutS [Fusobacterium sp. 3_1_5R] Length = 866 Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust. Identities = 297/889 (33%), Positives = 511/889 (57%), Gaps = 48/889 (5%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + S TP+M QY EIK ++++ +R+GDFYE+FF+DA +AS+ LG+TLT R + G+++ Sbjct: 1 MASETPLMAQYKEIKEEYQNAILLFRLGDFYEMFFEDAKIASKELGLTLTSRNREKGQEV 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 P+ GVP H+ Y+ KL++ G+ +AIC+Q+E P + K +V+R V R++TPGT + Sbjct: 61 PLAGVPYHSVASYVAKLLEKGYTVAICDQVEDP-----KAAKGIVKREVTRVLTPGTQID 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD----RLISDIMRIDPREI 197 L + YLM+ AIA+ DI+TG F++ +L+ ++ +I+P+E+ Sbjct: 116 VDYLDGKSNQYLMSFVCKEEGAAIAYFDITTGEFRVRELKEGNLFYQLLGELGKINPKEL 175 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ-VE 256 I E+ + Y+ FE + + + N + +ES + + Y I ++++FG + + Sbjct: 176 ILEEE--IYRNYQDDFEKYPDFSGIKINFCKNVKQAESYLKECYQILSLESFGLAQKPLA 233 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 + A A + Y+K Q + + Q T+ ++ + + NLEI +L Sbjct: 234 QQACANILDYVKTLQKGQEFPLMKISLLSNQETMELNRSGQKNLEIF--------GALFS 285 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D T G R + +PL + KI R D + FF + +L ++++L D+ R Sbjct: 286 ILDLCKTSMGSRYLKRVLQNPLLNIAKIKKRQDYVEFFTKEVLLREEVRELLSEVYDLER 345 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK-LPQSLEKTL 435 L ++++ +DI + + +++ L L+ L R ++ K+++ + +++ + Sbjct: 346 ILGKIQLSTVNGRDILALGNSLKAA-----LLLEKQLH---RYSMLKMEREVFSEMQENI 397 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + + + P R+GG + G LDE R + K I+ ++ + E+T IK LKIK+ Sbjct: 398 MNAIMIEAPFSIREGGIFQKGYHQELDELRHIASSGKEILLDIEAREREKTGIKTLKIKY 457 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GYFIEV+ ++ ++ +I +QT+ N R+ EL + E+RI NA Sbjct: 458 NKVFGYFIEVSKANEHLVP------SHYIRKQTLVNSERYIVEELKEYEDRILNAKTKIE 511 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E F+ I EQ E+L + ++ ++ +D+ + A LA +++Y RP + + Sbjct: 512 SLEYYLFQEFVEKIKEQKEALSDLARQLSFLDVMTSFAQLAIQKSYVRPEVVEEDILEIC 571 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHPIVE + + + +I ND DK S ++ +LTGPNM GKST+++Q ALI+I Sbjct: 572 GGRHPIVENLIPKGT---YIKNDLYF----DK-SERMMVLTGPNMSGKSTYMKQIALIII 623 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +AQ+GS+VPA +A IGIVDK+F+R+G++D+L +G+STFMVEM E A+I++ AT +SF+IL Sbjct: 624 LAQVGSFVPADFAKIGIVDKIFTRIGASDDLLTGQSTFMVEMSEVANIIHNATEKSFIIL 683 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DG+SIA A E++H R + + ATH+HELT+L K L+ N ++V + Sbjct: 684 DEIGRGTSTFDGISIATAITEHIHSHIRAKTIFATHYHELTELEKELELVKNYRIEVQEQ 743 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR---- 851 + ++FL +++ G AD SYGI+V KL+GLP +++ R+ IL EK +K M+ Sbjct: 744 GKEVLFLREIVQGGADKSYGIEVAKLSGLPQSILKRSKQILSRLEKQKALVEKKMQGEQM 803 Query: 852 -LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 L+ E +E + + ++ +E+I+ L++D+M+PL AL L ++K Sbjct: 804 VLFQAEEIEEEEETERNMEEQSVLEEIRKLSIDQMTPLQALLVLQSLKG 852 >gi|262369724|ref|ZP_06063052.1| mismatch repair protein [Acinetobacter johnsonii SH046] gi|262315792|gb|EEY96831.1| mismatch repair protein [Acinetobacter johnsonii SH046] Length = 842 Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust. Identities = 316/866 (36%), Positives = 475/866 (54%), Gaps = 44/866 (5%) Query: 48 MGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAI 107 MGDFYELFF+DA A++ LGITLT RGK G+ IPM GVP H A Y+ +L+K G + I Sbjct: 1 MGDFYELFFEDAHKAAKLLGITLTYRGKANGEPIPMAGVPYHAAEGYLARLVKKGETVVI 60 Query: 108 CEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAW 167 CEQI + K+ V R VVR++TPGTLT+D LL+ S+ L+A+ + E IA Sbjct: 61 CEQI------GEVTGKAPVERGVVRIITPGTLTDDALLTAHQSSNLVALCVQQNEIGIAL 114 Query: 168 IDISTGIFKISTSNHDRLISDI--MRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPN 225 +D+S G+FK+ I R+ P EI+ E + + + + L +PN Sbjct: 115 LDLSAGLFKVQQQEFQLEQLGIELSRLMPSEILVDENIVDPNIIEHIKKLLDCPVTRRPN 174 Query: 226 VFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPERE 284 V F+ + ++ + D + ++T+ FG + K AAA+ I Y K+TQ P I + E Sbjct: 175 VDFNLNNAQKTLCDQFAVSTLAGFGIDHLPLAKAAAASLIHYAKETQKTALPHIRSIQLE 234 Query: 285 DIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKI 344 + +D R NLE++ L SL + I+ T GGRL + + PL D+ + Sbjct: 235 QSSDFIALDPVTRKNLELVEPLF-EHGTSLFQLINDCQTAMGGRLLSRTLMQPLRDTKLL 293 Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG------I 398 + RLD+ + +P++ +LK D+ R LSR+ +G P+D+ +R + Sbjct: 294 DARLDATKSLVDG-YHESPVRLVLKEIGDIERVLSRVALGSARPRDLVQLRQACAQVPYL 352 Query: 399 RSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGAD 458 R I + ++ L +L E+L L + L S + + P RDG + +G D Sbjct: 353 RHAIQPVIQSKQSALISQLN---EELGDF-HGLHQRLMSAIVEHPPVLLRDGNVIAEGFD 408 Query: 459 ASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLE 518 LDE R +RD + + + L+++ + T I LKI +N GY+IE+T + A + Sbjct: 409 HELDELRKIRDHAGQYLIDLEIQERQNTGISTLKIGYNRVSGYYIELTRAQAE------Q 462 Query: 519 SKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDN 578 + D +I RQT+ N R+ T EL E+++ ++ + AL E FE+L + + L Sbjct: 463 APDHYIRRQTLKNAERYITPELKTFEDKVLSSESRALAREKMLFEMLLDELRADIGHLQM 522 Query: 579 ASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIAND 638 S IA ID+ A A+ +N+ RP + GRHP+VE K F ND Sbjct: 523 MSSAIAQIDLLANFAHQARLRNWSRPEYSPEIGVKIIAGRHPVVEALNKAS----FTPND 578 Query: 639 CDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFS 698 L D N ++ ++TGPNMGGKSTF+RQ ALI ++A GSYVPA A +G +D++F+ Sbjct: 579 TTL----DFNH-RMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPAQSAVLGPIDRIFT 633 Query: 699 RVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYL 758 R+GSAD+L++G+STFMVEM ET+ IL+ ATNQS V++DE+GRGT+T DGLS+AWA + L Sbjct: 634 RIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVLMDEVGRGTSTYDGLSLAWACVLDL 693 Query: 759 HETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQV 818 + +C L ATH+ ELT+L+K N + + N +I LHKV G A S+G+QV Sbjct: 694 TKRIKCLCLFATHYFELTELAKE-TAIDNYHVTAKELNGNLILLHKVQHGPASQSHGLQV 752 Query: 819 GKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR------LYYPEIQTKESKNNLSKNDKL 872 KLAG+P +VI A + LK EK K ++ + PE++ E + K Sbjct: 753 AKLAGIPASVIKEAQNRLKILEKQQLQKPKVVQNDLFAAIETPELEIIERVVEIEKPSAA 812 Query: 873 FVEKIKCLNLDEMSPLTALKTLYAVK 898 E +K +++D +SP AL+ LYA+K Sbjct: 813 L-ELLKSIDVDNLSPREALQQLYALK 837 >gi|257466742|ref|ZP_05631053.1| DNA mismatch repair protein MutS [Fusobacterium gonidiaformans ATCC 25563] gi|315917891|ref|ZP_07914131.1| DNA mismatch repair protein mutS [Fusobacterium gonidiaformans ATCC 25563] gi|313691766|gb|EFS28601.1| DNA mismatch repair protein mutS [Fusobacterium gonidiaformans ATCC 25563] Length = 866 Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust. Identities = 296/889 (33%), Positives = 509/889 (57%), Gaps = 48/889 (5%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + S TP+M QY EIK ++++ +R+GDFYE+FF+DA +AS+ LG+TLT R + G+D+ Sbjct: 1 MASETPLMAQYKEIKEEYQNAILLFRLGDFYEMFFEDAKIASKELGLTLTSRNREKGQDV 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 P+ GVP H+ Y+ KL++ G+ +AIC+Q+E P + K +V+R V R++TPGT + Sbjct: 61 PLAGVPYHSVASYVAKLLEKGYTVAICDQVEDP-----KAAKGIVKREVTRVLTPGTQID 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD----RLISDIMRIDPREI 197 L + YLM+ AIA+ DI+TG F++ +L+ ++ +I+P+E+ Sbjct: 116 VDYLDGKSNQYLMSFVCKEEGAAIAYFDITTGEFRVRELKEGNLFYQLLGELGKINPKEL 175 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ-VE 256 I E+ + Y+ FE + + + N + +ES + + Y I ++++FG + + Sbjct: 176 ILEEE--IYRNYQDDFEKYPDFSGIKINFCKNVKQAESYLKECYQIMSLESFGLAQKPLA 233 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 + A + Y+K Q + + Q T+ ++ + + NLEI +L Sbjct: 234 QQVCANILDYVKTLQKGQEFPLMKISLLSNQETMELNRSGQKNLEIF--------GALFS 285 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D T G R + +PL + KI R D + FF + +L ++++L D+ R Sbjct: 286 ILDLCKTSMGSRYLKRVLQNPLLNIAKIKKRQDYVEFFTKEVLLREEVRELLSEVYDLER 345 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK-LPQSLEKTL 435 L ++++ +DI + +++ L L+ L R ++ K+++ + +++ + Sbjct: 346 ILGKIQLSTVNGRDILALGKSLKAA-----LLLEKQLH---RYSMLKMEREVFSEMQENI 397 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + + + P R+GG + G LDE R + K I+ ++ + E+T IK LKIK+ Sbjct: 398 MNAIMIEAPFSIREGGIFQKGYHQELDELRHITSSGKEILLDIEAREREKTGIKTLKIKY 457 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GYFIEV+ ++ ++ +I +QT+ N R+ EL + E+RI NA Sbjct: 458 NKVFGYFIEVSKANEHLVP------SHYIRKQTLVNSERYIVEELKEYEDRILNAKTKIE 511 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E F+ I EQ E+L + ++ ++ +D+ + A LA +++Y RP + ++ Sbjct: 512 SLEYYLFQEFVEKIKEQKEALSDLARQLSFLDVMTSFAQLAIQKSYVRPEVVEEDILEIR 571 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHPIVE + + + ++ ND DK S ++ +LTGPNM GKST+++Q ALI+I Sbjct: 572 GGRHPIVENLIPKGT---YVKNDLYF----DK-SERMMVLTGPNMSGKSTYMKQIALIII 623 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +AQ+GS+VPA +A IGIVDK+F+R+G++D+L +G+STFMVEM E A+I++ AT +SF+IL Sbjct: 624 LAQVGSFVPADFAKIGIVDKIFTRIGASDDLLTGQSTFMVEMSEVANIIHNATEKSFIIL 683 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DG+SIA A E++H R + + ATH+HELT+L K L+ N ++V + Sbjct: 684 DEIGRGTSTFDGISIATAITEHIHSHIRAKTIFATHYHELTELEKELELVKNYRIEVQEQ 743 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR---- 851 + ++FL +++ G AD SYGI+V KL+GLP ++ R+ IL EK +K M+ Sbjct: 744 GKEVLFLREIVQGGADKSYGIEVAKLSGLPQNILKRSKQILSRLEKQKALVEKKMQGEQM 803 Query: 852 -LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 L+ E +E + + ++ +E+I+ L++D+M+PL AL L ++K Sbjct: 804 VLFQAEEIEEEEETERNMEEQSVLEEIRKLSIDQMTPLQALLVLQSLKG 852 >gi|226312963|ref|YP_002772857.1| DNA mismatch repair protein MutS [Brevibacillus brevis NBRC 100599] gi|254766617|sp|C0ZEZ4|MUTS_BREBN RecName: Full=DNA mismatch repair protein mutS gi|226095911|dbj|BAH44353.1| DNA mismatch repair protein MutS [Brevibacillus brevis NBRC 100599] Length = 862 Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust. Identities = 291/891 (32%), Positives = 491/891 (55%), Gaps = 57/891 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+ IK PD+ +F+R+GDFYELFFDDA+LASR L ITLT R + IPMCG Sbjct: 5 TPMIQQYLAIKKDYPDTFLFFRLGDFYELFFDDAILASRELEITLTGRDGGGSERIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A+ YI +L+K GH++A+CEQ+E P EAK +VRR V R++TPGT+ E + L Sbjct: 65 VPHHAADGYIAELLKKGHKVAVCEQVEDPKEAK-----GVVRREVTRVITPGTMMEGKWL 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST--SNHDRLISDIMRIDPREIIFSEKE 203 + ++NY+ A+A++ +A D+STG +++ + ++ + ++ P+E++F Sbjct: 120 TDKENNYMAALAQVEGRTGVAACDMSTGEMYVTSLAGQAESVLDEALQYRPKELVF---- 175 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITT--VDTFGSFSQVEKTAAA 261 G A+ P ++ ++ D + + + + + A Sbjct: 176 ------------FGLAAL--PKTALPSTVVDAHQLDVFAVDSQYAEQAKGLDVSMRAAVN 221 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 A + YI TQ + + ++ D + L +D +R NLE+ T+ +++ SLL +D Sbjct: 222 ALLFYIGTTQKRSLAHMRLLKQYDAKQYLQMDGFSRRNLELTETIRDKTKKGSLLWLLDR 281 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGRL I PL ++ RL ++ + +L + ++ L D+ R R Sbjct: 282 TQTAMGGRLLRRWIERPLLSRDQLEARLSAVEALKGDMLLRSDLRTCLDRVYDLERLAGR 341 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKTLSSM 438 + G +D+ +R + + + ++ + P EL +++ + L+ Sbjct: 342 ISYGNANARDLIQLRMSLEAVPELKQYMIQTNTPVLMELANGMDECADIV----NYLAHA 397 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 L DD P R+GG +R G D LD+ + + K IA L+ E T I++LK+ N Sbjct: 398 LVDDPPISVREGGMIRTGYDEYLDKLHTASREGKTWIAQLEQGEREATGIRSLKVGFNKV 457 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IE++ S+ + + R+ +QT++N R+ T EL + E I A + +E Sbjct: 458 FGYYIEISKSNIANV-----PAGRYERKQTLANAERYITPELKEREALILEAEEKMIELE 512 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F + + + + L N ++ IA +D+ A A ++ E+ + RP + S ++++ +GR Sbjct: 513 YQLFVAVRSEVAKHIPRLQNLAERIASVDVLQAFATVSDERGFVRPELVESGDYVITEGR 572 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE L+++ ++AND ++ D+ + ++ L+TGPNM GKST++RQ ALI +MAQ Sbjct: 573 HPVVEAVLEREK---YVANDVEM----DQTNRQVLLITGPNMAGKSTYMRQIALITVMAQ 625 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +G +VPA A + IVD++F+R+G+AD+L G STFMVEM+ET L +AT +S ++LDEI Sbjct: 626 IGCFVPAKQAKLSIVDQIFTRIGAADDLVGGHSTFMVEMLETRHALQKATAKSLILLDEI 685 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DG+++A A IEY+ + + L +TH+HELT L+++L N + + Sbjct: 686 GRGTSTYDGMALAQAVIEYICQKIGAKTLFSTHYHELTGLAETLSGVVNVNARCEEREGK 745 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK----LYHHNQKDMRLYY 854 ++FLHK+ G AD SYGI V +LA +P VI RA IL E + D+++ Sbjct: 746 LLFLHKIEEGRADKSYGIHVAELAEMPTWVIERARSILTGLEANGSTGNGNAASDVQMSL 805 Query: 855 PEIQT-------KESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + T +E S ++ + +++ L+L+ +P+ A+ LYA K Sbjct: 806 ETLWTAPVAAVREEPMQFASAEEEAIMAELRELDLNSTTPMDAMMKLYAWK 856 >gi|261345853|ref|ZP_05973497.1| DNA mismatch repair protein MutS [Providencia rustigianii DSM 4541] gi|282566343|gb|EFB71878.1| DNA mismatch repair protein MutS [Providencia rustigianii DSM 4541] Length = 855 Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust. Identities = 296/826 (35%), Positives = 463/826 (56%), Gaps = 36/826 (4%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 ++N +S TPMM+QY+++K+ +PD L+FYRMGDFYELFFDDA AS+ L I+LTKRG+ G Sbjct: 4 KQNFESHTPMMQQYLKLKAQHPDILLFYRMGDFYELFFDDAKKASQLLDISLTKRGQSAG 63 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM GVP H A +Y+ +L+++G +AICEQI P +K V R VVR+VTPGT Sbjct: 64 QPIPMAGVPHHAAENYLARLVQMGESVAICEQIGDPATSK-----GPVERQVVRIVTPGT 118 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 +T++ LL+ N L AV + + A +DI++G F IS + + L +++ R P E+ Sbjct: 119 ITDEALLNERQDNLLAAVWQDAQGYGFATLDITSGRFIISEIDDEESLKAELQRTRPAEL 178 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVE 256 ++ E S L E + +P F+ ++ ++ + + FG + Sbjct: 179 LYPEDFAS----MPLIEHSKGLR-RRPLWEFELDTAKQQLGLQFGTKDLIGFGVENAHKA 233 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 AA + Y+K TQ + P I E + +D+A R NLE+ + L+G E +L Sbjct: 234 LRAAGCLLQYVKDTQRTSLPHIRSIIMEKQNDNVILDAATRRNLELTQNLAGGTENTLAA 293 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D +T G R+ + +PL + + R +I + + + P L+ D+ R Sbjct: 294 ILDLCVTPMGSRMLKRWLHTPLRNIDVLTHRQQAIGALQECGLELQPF---LRQIGDLER 350 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKT 434 L+RL + P+D+ +R + +I + ++D + L+ + + +L LEK Sbjct: 351 VLARLALRSARPRDLTHMRHAFQQYHDIHQILEQSDCGYLQTLQTRIGQFDELQSLLEKA 410 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + + P RDGG + G + LDE R+L D + + L+++ E+ I LK+ Sbjct: 411 IV----EAPPVLVRDGGVIAPGYHSELDEWRALADGATDYLDRLEIREREKLGIDTLKVG 466 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+I+V+ + + + ++ RQT+ N R+ EL + E+++ + A Sbjct: 467 YNAVHGYYIQVSRGQSHL------TPIHYVRRQTLKNAERYIIPELKEYEDKVLTSKGKA 520 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L IE ++ L + ++ +L +++ +A +D+ LA A+ Y P + + + Sbjct: 521 LAIEKALYDELFDMLLPHLAALQTSAEALAELDVLANLAERAETLGYACPQLTDKPGIQI 580 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 +GRHP+VE+ L S+PFI+N LS +L ++TGPNMGGKST++RQ ALI Sbjct: 581 TEGRHPVVERVL----SEPFISNPLSLSPQR-----RLLIITGPNMGGKSTYMRQTALIT 631 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++A +GS+VPAS A IG VD++F+RVG++D+LASGRSTFMVEM ETA+IL+ AT S V+ Sbjct: 632 LLAYIGSFVPASKAVIGPVDRIFTRVGASDDLASGRSTFMVEMTETANILHNATEHSLVL 691 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + L+ N L + Sbjct: 692 MDEIGRGTSTYDGLSLAWACAENLVNRIKAMTLFATHYFELTTLPEKLEGAVNIHLDAIE 751 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + I F+H V G A SYG+ V LAG+P VI RA LK E Sbjct: 752 HGDTIAFMHNVQEGAASKSYGLAVASLAGVPKEVIKRAKQKLKELE 797 >gi|228474938|ref|ZP_04059666.1| DNA mismatch repair protein MutS [Staphylococcus hominis SK119] gi|314936543|ref|ZP_07843890.1| DNA mismatch repair protein MutS [Staphylococcus hominis subsp. hominis C80] gi|228270923|gb|EEK12311.1| DNA mismatch repair protein MutS [Staphylococcus hominis SK119] gi|313655162|gb|EFS18907.1| DNA mismatch repair protein MutS [Staphylococcus hominis subsp. hominis C80] Length = 873 Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust. Identities = 327/924 (35%), Positives = 488/924 (52%), Gaps = 110/924 (11%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPMM+QY++IKS D L+F+R+GDFYE+FF+DA ASR L ITLTKR I Sbjct: 1 MANVTPMMQQYLKIKSQYQDCLLFFRLGDFYEMFFEDAKEASRVLEITLTKRDAKKENPI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+AN YI+ LI G+++AICEQ+E P + K +V+R VV++VTPGT+ E Sbjct: 61 PMCGVPYHSANSYIETLINNGYKVAICEQMEDP-----KQTKGMVKREVVKVVTPGTMME 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFS 200 + +NY+++ + +A+++ D+STG K + + LI++I+ I+P EI+ Sbjct: 116 QGGMDENQNNYILSFIQNENGYALSYCDVSTGELKATNFEDESTLINEIITINPNEIVVR 175 Query: 201 E--------------------KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADY 240 E +E+S EY +V + N+ F ++ + DY Sbjct: 176 EDINEDLKKQISLTTETITVREEISDIEY--------SVNTLENNLMF---LTTQLLLDY 224 Query: 241 YNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNL 300 + T S +E AAI ++K +D A+ NL Sbjct: 225 IHHTQK---RDLSHIEDVITYAAIDFMK-----------------------MDYYAKRNL 258 Query: 301 EILRTLS-GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPI 359 E+ ++ S++ +LL +D + T G R + I PL I RLD + FI + I Sbjct: 259 ELTESIRLKSKKGTLLWLMDETKTPMGARRLKQWIDRPLIHKDNIEQRLDIVESFIDHFI 318 Query: 360 LINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKND-LPEELR 418 + ++ L D+ R + R+ G +D+ ++ I NI +L + D + Sbjct: 319 ERDTLRGYLNQVYDIERLVGRVSYGNVNARDLIQLKHSISEIPNIKSLLEQMDNVTTTQF 378 Query: 419 GAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASL 478 +E L+ L + LE +L ++ P +DGG + G LDE K +A L Sbjct: 379 STLEPLEDLLKVLEDSLV----EEPPISVKDGGLFKQGFSKQLDEYLEASKNGKDWLAQL 434 Query: 479 QLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHR-QTMSNLTRFTT 537 Q K E T IK+LKI +N GYFIE+T ++ + E + HR QT+SN RF T Sbjct: 435 QAKERERTGIKSLKISYNKVFGYFIEITRANL----QGFEPSEHDYHRKQTLSNAERFIT 490 Query: 538 LELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAK 597 EL + E+ I A + A+ +E + F L + +E L ++VI+ +D + A +A+ Sbjct: 491 DELKEKEDIILGAEDKAIELEYQLFIRLREHVKSYTERLQRQAKVISELDCLQSFAEIAQ 550 Query: 598 EQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTG 657 + NY RP + +++ RHP+VE+ + ++ NDC L D+N+ ++L+TG Sbjct: 551 KYNYVRPEFSDDKTLNLENSRHPVVERVM---DYNDYVPNDCYL----DQNNF-IYLITG 602 Query: 658 PNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEM 717 PNM GKST++RQ A+I IMAQMG+YVP A + I D++F+R+G+AD+L SG+STFMVEM Sbjct: 603 PNMSGKSTYMRQVAIISIMAQMGAYVPCDNAILPIFDQIFTRIGAADDLVSGKSTFMVEM 662 Query: 718 IETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTD 777 +E L AT S +I DEIGRGT+T DGLS+A A IEY+ ET+ + L +TH+HELT Sbjct: 663 LEAQKALTYATADSLIIFDEIGRGTSTYDGLSLAQAMIEYVAETSHAKTLFSTHYHELTT 722 Query: 778 LSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILK 837 L + L N + + +IFLHKV G D SYGIQV KLA LP VI RA IL Sbjct: 723 LDQQLSSLKNVHVAADEYQGELIFLHKVKEGAVDDSYGIQVAKLANLPEKVIERAQVILN 782 Query: 838 TFE-----------KLYHHNQKDMRLYYPEIQTKESKNNLSKND-------KLF------ 873 FE K Y+ N KD+ + KE + + + D LF Sbjct: 783 AFEQNGLSDENVNRKQYNDNSKDIE-NKDHLINKEEHSTIKQTDVFEQTSFDLFNSNETQ 841 Query: 874 --VE-KIKCLNLDEMSPLTALKTL 894 +E +IK LN+ M+P+ AL L Sbjct: 842 SEIEAQIKNLNISNMTPIEALLKL 865 >gi|223019691|dbj|BAH22360.1| DNA mismatch repair protein MutS [Enterobacter cloacae] Length = 853 Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust. Identities = 308/903 (34%), Positives = 483/903 (53%), Gaps = 79/903 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPHHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAALWQDGKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE +L E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-ALIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLIG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y+K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYVKDTQRTALPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGVENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q +L+ D Sbjct: 291 LASVLDNTVTPMGSRMLKRWLHMPVRDTDTLVCRQQTIAALQDR---YTELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP-QSLE 432 + R L+RL + P+D+A +R + LPE LR + + P Q L Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLSDVDSAPVQKLR 394 Query: 433 KTLSSM----------LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 +T+ + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 ETMGEFAELRELLERAIIDAPPVLVRDGGVIAPGYNEELDEWRALADGATDYLDKLEIRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E + LK+ +N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERLGLDTLKVGYNAVHGYYIQISRGQSHL------APIHYVRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + ++ L + ++ L ++ +A +D+ + LA A+ NY Sbjct: 509 YEDKVLTSKGKALALEKQLYDELFDMLMPHLADLQLSAGALAELDVLVNLAERAETLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L ++PFIAN LS ++ ++TGPNMGG Sbjct: 569 CPTFTDKPGIRITEGRHPVVEQVL----NEPFIANPLSLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQTALIALLAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DE+GRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATEHSLVLMDEVGRGTSTYDGLSLAWACAENLANKIKAMTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E L Sbjct: 740 EGVANVHLDALEHGDTIAFMHTVQEGAASKSYGLAVAALAGVPKEVIKRARQKLRELESL 799 Query: 843 YHH------NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYA 896 + + M L P +T + VE ++ L+ D ++P AL+ +Y Sbjct: 800 SPNAAATQIDGTQMSLLAPAEETSPA-----------VEALENLDPDSLTPRQALEWIYR 848 Query: 897 VKA 899 +K+ Sbjct: 849 LKS 851 >gi|167461066|ref|ZP_02326155.1| DNA mismatch repair protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381944|ref|ZP_08055894.1| MutS-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154084|gb|EFX46412.1| MutS-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 893 Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust. Identities = 286/818 (34%), Positives = 462/818 (56%), Gaps = 33/818 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+ IK PD+ +F+R+GDFYE+FF+DAL A+R L ITLT R + IPMCG Sbjct: 6 TPMIQQYLAIKETVPDAFLFFRLGDFYEMFFEDALNAARELEITLTGRDGGAKERIPMCG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI +LI+ G+++AICEQ+E P A K +V+R +VR++TPGT+ +++ L Sbjct: 66 VPYHSAQTYINRLIEKGYKVAICEQVEDPAAA-----KGVVKREIVRIITPGTVMDNKSL 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEKE 203 T +NY+ A+ + + ++ DISTG + T++ + L+ ++ P E+I Sbjct: 121 GETSNNYIAAIFQTTDAFGLSACDISTGELYSTRLTASRELLVDELNTYMPSEVIGEATL 180 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESR-IADYYNITTVDTFGSFSQVEKTAAAA 262 L T+ A+P V+ E ++ ++ + E+ A Sbjct: 181 LEEL-------TVWTKQWAKPIVYTPWEQKEPDLLSTHFESGQCE---GLKTEEENALVL 230 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDYS 321 ++Y+K+TQ I R + +D + NLE++ T+ +++ SLL +D + Sbjct: 231 LLTYLKETQKKAVTHIKQIRRYQPTQYMTMDPFTKRNLELVETVRDRTKKGSLLWLLDKT 290 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +T GGR+ I PL + + I RL++++ +Q IL ++ L D+ R ++R+ Sbjct: 291 VTAMGGRMLRRWIEKPLMNISGIEERLEAVDALVQQLILREDLKSGLDKVYDLERLVARI 350 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 G +D+ +R +R ++ L L + + L+ +L + + L + + D Sbjct: 351 SYGNANARDLVALRQSLRQVPALMELCLDSS-SKTLQRIARRLDRC-EDLAGWIDEAIVD 408 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + P R+GG +R+G LD+ R K+ IA L+ K +ET IK+LKI +N GY Sbjct: 409 EPPVSVREGGMIREGYHDYLDQLREASRNGKQWIAELERKEKQETGIKSLKIGYNRVFGY 468 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IEVT ++ L + + +QT++N RF T EL + E I A + IE E Sbjct: 469 YIEVTKANIPSLPEGW-----YERKQTLTNAERFVTPELKEKEALILEAEEKRVDIEYEL 523 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 F + + I E L ++ IA ID+ +LA ++ + +P I IV++GRHP+ Sbjct: 524 FVQIRDRIGEHISRLQTLAEEIAEIDVYQSLASVSAAHRFVKPEIHEGYELIVEEGRHPV 583 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE L + F+AN+ +L + G++ L+TGPNM GKST++RQ A+I +MAQ+G Sbjct: 584 VESVLNEGQ---FVANETELV----REGGQILLITGPNMAGKSTYMRQVAVICLMAQIGC 636 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA A I I D++F+R+G+AD+L G+STFMVEM++ + +AT QS VI+DE+GRG Sbjct: 637 FVPAQKAKIPITDRVFTRIGAADDLIGGQSTFMVEMMDIQVMTEKATEQSLVIIDELGRG 696 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 T+T +G++IA A IEYLH C+ L++THFHEL L +SL+ N ++ V +S + F Sbjct: 697 TSTGEGMAIAQAVIEYLHHEVGCKTLVSTHFHELAHLEESLRHLRNYSMAVKESGGQVTF 756 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF 839 L ++I G A SYGI ++AGLP +I R+Y++L Sbjct: 757 LRRLIRGAASTSYGIYCAEVAGLPAPIIQRSYELLNAL 794 >gi|161502025|ref|YP_001569137.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189083189|sp|A9MF43|MUTS_SALAR RecName: Full=DNA mismatch repair protein mutS gi|160863372|gb|ABX19995.1| hypothetical protein SARI_00042 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 860 Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust. Identities = 309/903 (34%), Positives = 488/903 (54%), Gaps = 73/903 (8%) Query: 17 DLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKH 76 D++++ S TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG Sbjct: 9 DIDKDFSSHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGAS 68 Query: 77 LGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTP 136 G+ IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTP Sbjct: 69 AGEPIPMAGIPHHAVENYLAKLVNQGESVAICEQIGDPATSK-----GPVERKVVRIVTP 123 Query: 137 GTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPR 195 GT++++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P Sbjct: 124 GTISDEALLQERQDNLLAAIWQDGKGYGYATLDISSGRFRLSEPADRETMAAELQRTNPA 183 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQV 255 E++++E AE +L E + ++ I +R T D G F V Sbjct: 184 ELLYAE---DFAEM-ALIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-V 234 Query: 256 EKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR 310 E AA + Y+K TQ + P I E Q ++ +D+A R NLEI + L+G Sbjct: 235 ENASRGLCAAGCLLQYVKDTQRTSLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGI 294 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 E +L +D ++T G R+ + P+ ++ + R +I ++ +Q +L+ Sbjct: 295 ENTLAAVLDCTVTPMGSRMLKRWLHMPIRNTDILRERQQTIGALQDT---VSELQPVLRQ 351 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP-Q 429 D+ R L+RL + P+D+A +R + LPE L +E + P Q Sbjct: 352 VGDLERILARLALRTARPRDLARMRHAFQQ------------LPE-LHAQLETVDSAPVQ 398 Query: 430 SLEKT----------LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQ 479 +L K L + D P RDGG + G LDE R+L D + + L+ Sbjct: 399 ALRKKMGDFAELRDLLERAIIDAPPVLVRDGGVIAPGYHQELDEWRALADGATDYLDRLE 458 Query: 480 LKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLE 539 ++ E T + LK+ +N GY+I+++ + + + ++ RQT+ N R+ E Sbjct: 459 IRERERTGLDTLKVGYNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPE 512 Query: 540 LIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQ 599 L + E+++ + AL +E + ++ L + ++ L ++ +A +D+ + LA A Sbjct: 513 LKEYEDKVLTSKGKALALEKQLYDELFDLLLPHLADLQQSASALAELDVLVNLAERAYTL 572 Query: 600 NYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPN 659 NY P + + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPN Sbjct: 573 NYTCPTFTDKPGIRIIEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPN 623 Query: 660 MGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIE 719 MGGKST++RQ ALI ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM E Sbjct: 624 MGGKSTYMRQTALIALLAWIGSYVPAQNVEIGPIDRIFTRVGAADDLASGRSTFMVEMTE 683 Query: 720 TASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLS 779 TA+IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L Sbjct: 684 TANILHNATENSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLP 743 Query: 780 KSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF 839 + ++ N L + + I F+H V G A SYG+ V LAG+P VI RA L+ Sbjct: 744 EKMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLREL 803 Query: 840 EKLYHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYA 896 E + + Q D T+ S + VE ++ L+ D ++P AL+ +Y Sbjct: 804 ESISPNAAATQVD--------GTQMSLLAAPEETSPAVEALENLDPDSLTPRQALEWIYR 855 Query: 897 VKA 899 +K+ Sbjct: 856 LKS 858 >gi|300312567|ref|YP_003776659.1| DNA mismatch repair protein [Herbaspirillum seropedicae SmR1] gi|300075352|gb|ADJ64751.1| DNA mismatch repair protein [Herbaspirillum seropedicae SmR1] Length = 894 Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust. Identities = 313/924 (33%), Positives = 487/924 (52%), Gaps = 77/924 (8%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 + ++L + TPMM+QY+ IK+ +P++LVFYRMGDFYELFF+DA ASR +G+TLT+RG Sbjct: 1 MTKDLAAHTPMMQQYLRIKADHPNTLVFYRMGDFYELFFEDAEKASRLMGVTLTQRGSSN 60 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G I M GVP H+ Y+ +LIK+G +AICEQI P +K V R VVR+VTPG Sbjct: 61 GTPIKMAGVPFHSVEQYLARLIKLGESVAICEQIGDPAT-----SKGPVERKVVRVVTPG 115 Query: 138 TLTEDQLLSPTDSNYLMAV------ARIRTEWAIAWIDISTGIFKISTSNHD------RL 185 TLT+ LL L+A+ +R + + ++W+ +++G K+ + R+ Sbjct: 116 TLTDSDLLPEKAERCLLAMQLVPSKSRKQMQVGLSWLSMASGALKMMEFTVEAALLDGRV 175 Query: 186 ISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITT 245 ++ RI E++ ++ +L E L N AV P+ FD SE + D + T Sbjct: 176 KQELERISAAEVLVADGQLEWCE-----PLLPNRAVTVPDWHFDQPSSEKALLDQLGVAT 230 Query: 246 VDTFGSFSQVEKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILR 304 + FG+ AA A+ Y + TQ + E + +D+A R NLE+ Sbjct: 231 LHGFGADGLGPAICAAGALLRYAQSTQGRGLQHVRTLTVESENEFIGLDAATRRNLELTE 290 Query: 305 TL----SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL 360 T+ + + +L T+D+ T G RL + L D R +IN ++ Sbjct: 291 TIRSQDANALAPTLFSTLDHCRTAMGSRLLRHWLHHALRDQQVARARHAAINALMRTDA- 349 Query: 361 INPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI------RSGINIL----NLFLK 410 + + L + PD+ R +R+ + P+D+A +R G+ R+ + + + L Sbjct: 350 CSGLSATLAAVPDIERITTRIALLSARPRDLAGLRAGLQQLGSLRAYVEMCGRDADASLL 409 Query: 411 NDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQ 470 L E+L VE L L +++ ++M+ RDGG + G DA LDE R L + Sbjct: 410 TQLHEDLATPVECLDLLERAIMLEPAAMV--------RDGGVIARGFDAELDELRGLSEN 461 Query: 471 SKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMS 530 + + + L+ + E T I NL++++N G++IEVT + +D + RQT+ Sbjct: 462 AGQYLLDLEARERERTGIANLRVEYNKVHGFYIEVTHGQTDKVPED------YRRRQTLK 515 Query: 531 NLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISI 590 N R+ EL E++ +A +L E +E L + L + +A +D + Sbjct: 516 NAERYIIPELKAFEDKALSAQERSLSREKFLYEQLLGDMGAHIVRLQAIAHALAQLDTLV 575 Query: 591 ALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSG 650 ALA A N+C P + + ++ GRHP+VE +++ FIANDC L+ Sbjct: 576 ALADHAVRNNWCAPQLVDEPCIQIEQGRHPVVENQIER-----FIANDCQLAAER----- 625 Query: 651 KLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGR 710 +L L+TGPNMGGKS F+RQ ALI ++A +GS+VPA+ A IG VD++F+R+G+AD+LA GR Sbjct: 626 RLLLITGPNMGGKSIFMRQVALITLLAYVGSFVPATSAVIGPVDRIFTRIGAADDLAGGR 685 Query: 711 STFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLAT 770 STFMVEM E+A+ILN AT S V++DE+GRGT+T DGL++AWA ++L + R L AT Sbjct: 686 STFMVEMTESAAILNNATEHSLVLMDEVGRGTSTFDGLALAWAIAKHLIDVTRSFTLFAT 745 Query: 771 HFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVIS 830 H+ ELT L + N L + + I+FLH V G A SYG+QV +LAG+P VI Sbjct: 746 HYFELTQLPEIHPTAANVHLSAVEHKDSIVFLHAVQSGPASQSYGLQVAQLAGVPAQVIR 805 Query: 831 RAYDILKTFEKLYHHNQKDMRLYY------------PEIQTKESKNNLSKNDKL---FVE 875 A L E L+ P+ + S+++ + D L ++ Sbjct: 806 AARKHLSALESQSMQATPQFDLFSAPAFATPGTQDEPDPADERSESDAVEPDPLAQALLQ 865 Query: 876 KIKCLNLDEMSPLTALKTLYAVKA 899 + ++ D ++P AL+ LY +KA Sbjct: 866 TLAQIDPDALTPRQALEALYQLKA 889 >gi|238898707|ref|YP_002924388.1| methyl-directed mismatch repair protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259511170|sp|C4K6P7|MUTS_HAMD5 RecName: Full=DNA mismatch repair protein mutS gi|229466466|gb|ACQ68240.1| methyl-directed mismatch repair protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 854 Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust. Identities = 304/878 (34%), Positives = 481/878 (54%), Gaps = 36/878 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 +S TPMM+QY+ +KS +P+ +FYRMGDFYELF+DDA ASR L I+LT+RG+ G IP Sbjct: 8 ESHTPMMQQYLRLKSEHPEVFLFYRMGDFYELFYDDAKRASRLLDISLTQRGQSAGTPIP 67 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H ++Y+ KL+++G AICEQ+ P +K V R VVR+VTPGT++++ Sbjct: 68 MAGVPYHVIDNYLAKLVQLGESAAICEQVGDP-----STSKGPVERKVVRIVTPGTISDE 122 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFK-ISTSNHDRLISDIMRIDPREIIFSE 201 LL N L AV + + A +DIS+G F+ + + + L +++ R P E+++ E Sbjct: 123 ALLQEKQDNLLAAVWQDKQGLGYATLDISSGRFRAMEPKDLEALKTELQRTHPSELLYPE 182 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAA 260 E L E+ + +P F+ + ++ + + FG + + AA Sbjct: 183 T----FELIDLIESRQGLR-RRPLWEFELETARQQLNLQFGTQDLTGFGVEQAHLALRAA 237 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 + Y+K TQ + P I + + + ID+A+R NLE+ LSG E +L +D Sbjct: 238 GCLLQYVKDTQRTSLPHIRELILQHEEDNVTIDAASRRNLELTENLSGGTENTLASILDC 297 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 ++T G R+ + P+TD + ++ R ++I + + ++ +L+ D+ R L+R Sbjct: 298 TVTSMGSRMLKRWLHMPITDMSTLHHRQEAIRVLQH---VASDLKPLLRKVGDLERILAR 354 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 L + P+D+A +R I ++ L + L+ + ++ + +L L + Sbjct: 355 LALRTARPRDLARMRLAFEQLPEIHDV-LNTCKSQHLKKLLSEIGQF-DALLDLLRRAIV 412 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D P RDGG + G + LD+ R+L D + + L+++ E K+ LK+ N G Sbjct: 413 DVPPVLIRDGGVIATGYNEELDKWRALSDGAHDYLNELEIRERHELKLDTLKVGFNAIHG 472 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+I+V+ + + ++ + RQT+ N+ R+ EL + E+++ + AL IE + Sbjct: 473 YYIQVSRAQSHLIPA------HYARRQTLKNVERYIIPELKEYEDKVLTSKGKALSIEKD 526 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 +E + + ++ SL +S +A +D+ LA A NY P++ + + GRHP Sbjct: 527 LYEEIFDLLLPHIASLQTSSTALAELDVLSNLAERADTLNYVCPVLTEKSVIEITGGRHP 586 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE+ KQ PFIAN LS ++ ++TGPNMGGKST++RQ ALIV++A +G Sbjct: 587 VVEQVSKQ----PFIANPISLSPER-----RMLIITGPNMGGKSTYMRQTALIVLLAHIG 637 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA A IG VD++F+R+G+AD+LASGRSTFMVEM ETA+IL+ AT +S V++DEIGR Sbjct: 638 SFVPADKAIIGSVDRIFTRIGAADDLASGRSTFMVEMTETANILHNATEKSLVLMDEIGR 697 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GT+T DGLS+AWA E L + L ATH+ ELT L + + N LQ + + I Sbjct: 698 GTSTYDGLSLAWACAENLSIHIKSMTLFATHYFELTSLPEKINGIVNVHLQALEQGDEIA 757 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 F+H V G A SYG+ V LAG+P VI RA L+ E N P + Sbjct: 758 FMHSVHEGAASKSYGLAVAALAGVPKKVIDRARQRLEELEFTLEENGHTK----PSLPAS 813 Query: 861 ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + D + K+K L D M+P AL+ +Y ++ Sbjct: 814 KPVFEKESTDHPVIRKLKTLKPDTMTPYDALQWIYYLQ 851 >gi|289450250|ref|YP_003475196.1| DNA mismatch repair protein MutS [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184797|gb|ADC91222.1| DNA mismatch repair protein MutS [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 876 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 310/892 (34%), Positives = 498/892 (55%), Gaps = 55/892 (6%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L + +PMM+QY+E+K +PD L+F+R+GDFYELFFDDAL+A++ L + LT R + Sbjct: 10 DLATLSPMMQQYVEMKRSHPDCLLFFRLGDFYELFFDDALIAAKLLELALTGRDCGQKER 69 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 PMCGVP H ++Y+ K+I G ++AICEQ+E P AK LV+R ++R+VTPGT+T Sbjct: 70 APMCGVPFHAVDNYVAKIIANGLKVAICEQMEDPALAK-----GLVKREIIRIVTPGTVT 124 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH------DRLISDIMRIDP 194 E + L +NYL++V + ++ + +A+IDI+T +++ T++ D++ +I R+ Sbjct: 125 EGEALESGRNNYLVSVYQSKSYYGLAYIDITT--YELQTTSFLLGNCADQVGDEIKRLMA 182 Query: 195 REIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 E++ + K +E+ + + V ++ D + +T + Sbjct: 183 AEVVGNTK---------FYESEVADELVKKGVLVSELPDDAFATDKFKAFWPETDAGKAD 233 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQS 313 + A + Y+ TQ + + Q LF+D+ AR NLE+ ++ SGS+ S Sbjct: 234 LCGKAVNGLLWYLASTQNYPASALQPAKLYQRQDFLFLDNVARRNLELTESMASGSKRGS 293 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T G R+ + + PL + +I+ RL ++ + IL +++IL+ D Sbjct: 294 LLGLLDCAETAMGSRMLRKLLEQPLLNKVEIDERLAAVQELKEGFILRQELREILRGMQD 353 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSL 431 + R +++ P+D+ +R + +LNL KN L + L + L L Sbjct: 354 LERLTTKILNYTAGPRDLGNLRSTLDKLPALLNLAERFKNPLLKSLFTEINCFDHLRLVL 413 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 +K L + P ++GG ++DG +AS DE R + I L+ + + + I+NL Sbjct: 414 DKALV----ERPPLSPKEGGIIKDGYNASCDELRQASANGRSWILQLEQRERDRSGIRNL 469 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 KI +N GY+IE++ S+ + D ++ +QT++N R+ T EL LE ++ A Sbjct: 470 KIGYNRVFGYYIEISKSNLEKVPAD------YLRKQTLANGERYITDELKSLEEKVLGAQ 523 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 L +E F L + L + +A +D ALA A + N+ RP I Sbjct: 524 QKLLQLEYSLFTELREMAADFGHDLLETAANLAYLDSLAALAEAADKYNFVRPDIYVDRK 583 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 + GRHP+VE+ +++ F+ ND L P+DK+ L LLTGPNM GKSTF+RQ A Sbjct: 584 LHIIAGRHPVVEQFVEKGR---FVPND--LILPDDKS---LLLLTGPNMAGKSTFMRQTA 635 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LIVIMAQMGS+VPA+ A IGIVD +++R+G++D+L +G+STFMVEM E A+IL +AT +S Sbjct: 636 LIVIMAQMGSFVPAAKAEIGIVDAIYTRIGASDDLTAGQSTFMVEMHEVATILAKATKRS 695 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNAT 789 +I+DEIGRGT+T DGL+IA A IE L + + R L +TH+HEL ++ L N Sbjct: 696 LLIMDEIGRGTSTYDGLAIASAVIETLTGKDGIQARTLFSTHYHELVEMEDILPNVINYH 755 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 + V E IIFLH++ G +D S+GI+V +LAG+P V+ RA ++LK EK +N Sbjct: 756 VAVERRGEEIIFLHQIERGGSDDSFGIEVARLAGVPKNVVERANELLKLLEK---NNAGR 812 Query: 850 MRLYY-------PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 RL + +I S+ ++ K V+++K L++ ++SPL A L Sbjct: 813 TRLKFRKEIPLSGQIAIFNSQGSIDPAMKELVKELKNLDIQQLSPLDAFHLL 864 >gi|313669316|ref|YP_004049600.1| DNA mismatch repair protein [Neisseria lactamica ST-640] gi|313006778|emb|CBN88248.1| DNA mismatch repair protein [Neisseria lactamica 020-06] Length = 865 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 314/887 (35%), Positives = 472/887 (53%), Gaps = 49/887 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM+QY+ IKS + D LVFYRMGDFYELF DDA+ A++ L ITLT RG+ G I M G Sbjct: 7 SPMMQQYLAIKSQHADKLVFYRMGDFYELFLDDAVEAAKLLDITLTTRGQMDGVPIKMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ +L+K+G +A+CEQ+ + K V R VVR+VTPGTLT+ L Sbjct: 67 VPFHAAEQYLARLVKMGKSVAVCEQV-----GEVGAGKGPVERKVVRIVTPGTLTDAAFL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 ++N + AV + AIAW + +G FK + D+L ++ R+ EI+ E + Sbjct: 122 EDKETNRIAAVNIDKKHIAIAWASLQSGEFKTKLTTADKLADELARLQAAEILLPEGKSL 181 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG---SFSQVEKTAAAA 262 +++ F + + Q F + +Y+ + FG + AA A Sbjct: 182 PDGFQANFSNITRLNPWQ----FAADAGAKLLTEYFGCQDLHGFGLDGKEHEAAVGAAGA 237 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 ++YI+ TQ + + E + +D+A R NLEI +TLSG + +L +D Sbjct: 238 LLNYIRLTQNLMPQHLDGISLETDSQYIGMDAATRRNLEITQTLSGKKSPTLFSILDGCA 297 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G RL A + PL I R +++ +Q LK+ D+ R +R+ Sbjct: 298 THMGSRLLALWLHHPLRSRAHIRARQEAVTALGSQ---YETLQGRLKNIADIERIAARIA 354 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL-PQSL--EKTLSSML 439 +G P+D+AV+RD + + I +L E +E LK + P++L +TL + + Sbjct: 355 VGNARPRDLAVLRDSLFALSEI-------ELSAEGSSLLETLKAVFPETLPVAETLKAAV 407 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + + +DGG + G A LDE R +++ + L+ + E T + LK++ N Sbjct: 408 MPEPAVWLKDGGVINQGYSAELDELRHIQNHGDEFLLDLEARERERTGLSTLKVEFNRVH 467 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 G++IE++ A D + RQT+ N RF T EL E+++ A AL +E Sbjct: 468 GFYIELSKVQAEQAPAD------YQRRQTLKNAERFITPELKTFEDKVLTAQEQALALEK 521 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 FE L + L A++ A +D+ A +A E + P + +++GRH Sbjct: 522 RLFEALLKEVQTALPQLQKAAKAAAALDVLSTFAAIAAEHGFVCPEFADYPVIRIENGRH 581 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE+ ++ F AN DL N K+ +L LLTGPNMGGKST++RQ ALIV++A Sbjct: 582 PVVEQQVRH-----FTANHTDL---NHKH--RLILLTGPNMGGKSTYMRQVALIVLLAHT 631 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPA A IG VD++F+R+G++D+LAS RSTFMVEM ETA IL+ AT QS V++DE+G Sbjct: 632 GSFVPADSARIGPVDQIFTRIGASDDLASNRSTFMVEMSETACILHHATEQSLVLMDEVG 691 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGT+T DGL+IA A +L + N+ L ATH+ ELT L ++ N L + I Sbjct: 692 RGTSTFDGLAIAHAVAGHLLQKNKSFSLFATHYFELTRLPETCAAAVNMHLSALEQGRDI 751 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY--YPE- 856 +FLH++ PG A SYGI V KLAGLPN + A L E Q + ++ PE Sbjct: 752 VFLHQIQPGPAGKSYGIAVAKLAGLPNRALKAAQKYLDELESQAADAQPQLDIFNLAPEG 811 Query: 857 -----IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 T + S++D + E + L+ D+++PL AL LY +K Sbjct: 812 RGGSDTGTPADDDAGSRSDGILTETLNRLDPDKLTPLEALSELYRLK 858 >gi|293412092|ref|ZP_06654815.1| DNA mismatch repair protein MutS [Escherichia coli B354] gi|291468863|gb|EFF11354.1| DNA mismatch repair protein MutS [Escherichia coli B354] Length = 853 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 314/900 (34%), Positives = 487/900 (54%), Gaps = 73/900 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTHVLLERQQTIGA-LQD--FTAELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFAELRDLLERAIIDTPPVLVRDGGVIAPGYNEELDEWRALADGATDYLERLEIRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL++E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALVLEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFIDKPGIRITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 740 EGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 799 Query: 843 YHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + Q D T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 800 SPNAAATQVD--------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|82778101|ref|YP_404450.1| DNA mismatch repair protein MutS [Shigella dysenteriae Sd197] gi|309786178|ref|ZP_07680806.1| DNA mismatch repair protein MutS [Shigella dysenteriae 1617] gi|90109857|sp|Q32CJ6|MUTS_SHIDS RecName: Full=DNA mismatch repair protein mutS gi|81242249|gb|ABB62959.1| methyl-directed mismatch repair [Shigella dysenteriae Sd197] gi|308925923|gb|EFP71402.1| DNA mismatch repair protein MutS [Shigella dysenteriae 1617] Length = 853 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 314/900 (34%), Positives = 486/900 (54%), Gaps = 73/900 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAGLQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFIDKQGIRITEGRHPVVERVL----NEPFIANPLNLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 740 EGIANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELENI 799 Query: 843 YHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + Q D T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 800 SPNAAATQVD--------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|209761774|gb|ACI79199.1| MutS protein [Escherichia coli] Length = 853 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 314/900 (34%), Positives = 486/900 (54%), Gaps = 73/900 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFIDKPGIRITEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 740 EGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 799 Query: 843 YHHN---QKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 ++ Q D T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 800 SPNDAATQVD--------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|323966881|gb|EGB62310.1| DNA mismatch repair protein MutS [Escherichia coli M863] gi|327251457|gb|EGE63143.1| DNA mismatch repair protein MutS [Escherichia coli STEC_7v] Length = 853 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 314/900 (34%), Positives = 485/900 (53%), Gaps = 73/900 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLESVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFIDKPGIRITEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 740 EGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 799 Query: 843 YHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + Q D T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 800 SPNAAATQVD--------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|331684348|ref|ZP_08384940.1| DNA mismatch repair protein MutS [Escherichia coli H299] gi|331077963|gb|EGI49169.1| DNA mismatch repair protein MutS [Escherichia coli H299] Length = 853 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 314/900 (34%), Positives = 486/900 (54%), Gaps = 73/900 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLEGVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFAELRDLLERAIIDTPPVLVRDGGVIATGYNEELDEWRALADGATDYLERLEVRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFIDKPGIRITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 740 EGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 799 Query: 843 YHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + Q D T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 800 SPNAAATQVD--------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|90416734|ref|ZP_01224664.1| DNA mismatch repair protein [marine gamma proteobacterium HTCC2207] gi|90331487|gb|EAS46723.1| DNA mismatch repair protein [marine gamma proteobacterium HTCC2207] Length = 851 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 301/819 (36%), Positives = 456/819 (55%), Gaps = 30/819 (3%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+Q++ +K+ +P+ ++FYRMGDFYELFFDDA AS L ITLT RGK G IPMCGVP Sbjct: 1 MMQQFLRLKADHPNDILFYRMGDFYELFFDDAKRASEILDITLTARGKTNGNPIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A Y+ KL+K GH +AICEQ+ P +K V R V+R++TPGT++++ LL Sbjct: 61 YHAAEGYLAKLVKQGHSVAICEQVGDP-----ETSKGPVERKVMRVLTPGTISDEALLDA 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRL-ISDIMRIDPREIIFSEKELSH 206 N L+A+ + +A +D+S+G F++ + IS++ R++P EI+ SE L Sbjct: 116 RRDNLLVAITHLDQTTGLASLDMSSGRFQLLELGSEEELISELQRLNPVEILLSEA-LPE 174 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS-FSQVEKTAAAAAIS 265 E+ S + + +P FD + + + + FG V +AA + Sbjct: 175 FEFFSARKGIKR----RPIWEFDLDSALRLLNKQFGTRDLSGFGCDHLPVAISAAGCLLQ 230 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y K TQ + P I E+ ++ +D+++R NLE+ ++G E +L + +D S T Sbjct: 231 YAKDTQRGDLPHIRSLVAENNTESVSLDASSRRNLELDNNMTGGSENTLFEVLDTSATTM 290 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 RL + PL + R SI N L + LK D+ R L+R+ + Sbjct: 291 ASRLLRRWLNRPLQHLPTLQARQQSIAALHHN-YLYEVLHGHLKQIGDMERILTRVALRS 349 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPT 445 P+D+ + + + + L L N L + LP+ L L S + ++ P Sbjct: 350 ARPRDLTRLHQSL-AVLPQLATALANPSTAHLGDLATAAEPLPE-LVHLLGSAVQENPPV 407 Query: 446 FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEV 505 R+GG + DG D+ LDE R+L + + L+ + + I LK+ +N GY+IE+ Sbjct: 408 VIREGGVIADGYDSQLDELRALNTNAGEFLLELEEREKVRSGISTLKVGYNRVHGYYIEI 467 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEIL 565 + + D +I RQT+ N RF T EL + E++ +A + +L E +E L Sbjct: 468 SRGQSDNAPVD------YIRRQTLKNAERFITPELKEFEDKALSAKSRSLAREKFLYEQL 521 Query: 566 SNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKT 625 + + +L N + ++ ID+ LA A N+C+P + ++ GRHP+VEK Sbjct: 522 LEQLNDSLAALQNCAAAVSEIDVLATLAERAHSLNFCQPNLSLEAGISIQGGRHPVVEKV 581 Query: 626 LKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPA 685 S+ PF+AN ++ + K+ ++TGPNMGGKST++RQ ALIV++AQ+GS+VPA Sbjct: 582 ----SNDPFVANHLEM-----HSERKMLVITGPNMGGKSTYMRQAALIVLLAQIGSFVPA 632 Query: 686 SYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATL 745 + A IG+VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ A+++S V++DE+GRGT+T Sbjct: 633 ASATIGLVDRIFTRIGSSDDLAGGRSTFMVEMTETANILHNASDRSLVLMDEVGRGTSTF 692 Query: 746 DGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKV 805 DGLS+AWA +L E R L ATH+ ELT L + N L ++ NE I+FLH + Sbjct: 693 DGLSLAWACAYHLAEKVRAFTLFATHYFELTSLPDKVSGACNIHLGATEYNENIVFLHSI 752 Query: 806 IPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYH 844 G A+ SYGIQV KLAGLP VIS A L E H Sbjct: 753 EEGPANKSYGIQVAKLAGLPEEVISLARQELALLEAGSH 791 >gi|257061144|ref|YP_003139032.1| DNA mismatch repair protein MutS [Cyanothece sp. PCC 8802] gi|256591310|gb|ACV02197.1| DNA mismatch repair protein MutS [Cyanothece sp. PCC 8802] Length = 888 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 295/834 (35%), Positives = 461/834 (55%), Gaps = 36/834 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TPM + Y+ +K P++L+ YR+GDF+E FF DA+ S+ L + LT + GK +G+ + M Sbjct: 33 TPMYQHYVMVKEQYPNALLLYRVGDFFECFFQDAVTISQELELVLTSKEGGKEIGR-VAM 91 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H + Y + L++ G+ +AIC+Q+E EA +G +V R + +L+TPGTLT++ Sbjct: 92 TGVPHHALDRYSRLLVEKGYAVAICDQVEDSAEAAAQGR--IVERKITKLLTPGTLTDEG 149 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD--RLISDIMRIDPREIIFSE 201 +L +N+L A+ W +A+ DISTG F +T + D L +++R+ P EI+ Sbjct: 150 MLPAKRNNFLAAIVIAGNHWGLAYADISTGEF-FTTQSQDIANLNLELLRLQPSEILIPT 208 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVF---------FDHSISESRIADYYNITTVDTFGS- 251 E + P+ F F + ++ R+ +NI +++ G Sbjct: 209 NAPDINSLLRPGEKSEYLVDGLPDCFCYSLRSQTHFSLNEAKPRLLITFNIRSLEGMGCE 268 Query: 252 FSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR- 310 + AA + YI+ TQ ++ + + L +D R NLEI +T+ S Sbjct: 269 HLPLAIRAAGGLLQYIEDTQKAHQVPLQPLRTYNQVDFLILDHQTRRNLEITQTVRDSTF 328 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 SLL ID + T GGR + PL I R ++I ++NP L ++++L+S Sbjct: 329 HGSLLWAIDRTCTAMGGRALRRWVLEPLLTIKGIEARQNTIQELVENPSLRQDLRQLLRS 388 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS 430 D+ R R+ G +D+ + + + ++ L + P ++ L+K+P Sbjct: 389 IYDLERITGRVGSGTANARDLLSLAESLVRLTDLAELANQGTSP-----YLKALQKIPPE 443 Query: 431 LE---KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 LE K + L + P +DGG +RDG + LD R D ++ +A+L+L ++T Sbjct: 444 LEQLGKYVIDHLVESPPLHLKDGGVIRDGINTDLDAMRQRLDDDRQWLANLELTERQKTG 503 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 + NLK+ +N GY+I + S A + K+ ++ +QT++N R+ T EL + E RI Sbjct: 504 VSNLKVGYNKTFGYYISLPRSKAELAPKN------YVRKQTLTNEERYITPELKERETRI 557 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 A + +E E F L + + E+ + + + ++ +A ID+ LA +A Q YCRP I Sbjct: 558 LTAQDDLNQLEYEIFTQLRSKVAEKGQEIRSIAKAVAAIDVLAGLAEVAVYQGYCRPEIV 617 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 + +GRHP+VE++L ++ F+ N + N L +LTGPN GKS +L Sbjct: 618 EGRAIEITEGRHPVVEQSL---AAGLFVPNSTKMGNTEANNYPDLIILTGPNASGKSCYL 674 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ LI +MAQ GS+VPA A +GI D++F+RVG+ D+LA+G+STFMVEM ETA+ILN Sbjct: 675 RQVGLIQLMAQTGSFVPAKSAKLGISDRIFTRVGAVDDLATGQSTFMVEMNETANILNHG 734 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 TN+S ++LDEIGRGTAT DGLSIAWA EYL + R + ATH+HEL +L+ L N Sbjct: 735 TNKSLILLDEIGRGTATFDGLSIAWAVAEYLATEVQGRTIFATHYHELNELASILSNVAN 794 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 + V + IIFLH+V PG AD SYGI+ G+LAGLP++VI RA ++ EK Sbjct: 795 YQVTVQELPNEIIFLHQVRPGGADKSYGIEAGRLAGLPSSVIKRAKQVMSQIEK 848 >gi|317056655|ref|YP_004105122.1| DNA mismatch repair protein MutS [Ruminococcus albus 7] gi|315448924|gb|ADU22488.1| DNA mismatch repair protein MutS [Ruminococcus albus 7] Length = 871 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 308/875 (35%), Positives = 481/875 (54%), Gaps = 44/875 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ +K + ++FYR+GDFYE+FFDDAL+ S+ L +TLT R L + PMCG Sbjct: 12 TPMMKQYLAVKKKYKNHILFYRLGDFYEMFFDDALIVSKELELTLTGRDCGLDERAPMCG 71 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H + Y++KLI+ GH +AICEQ + P E + LV R+V+R+VTPGTL E +L Sbjct: 72 VPFHACDVYLKKLIEKGHMVAICEQTKDPSECQ-----GLVPRDVIRVVTPGTLIESSML 126 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG---IFKISTSN-HDRLISDIMRIDPREIIFSE 201 + +NYL A E ++ DISTG +F+ + + + I+++ R P EI+ ++ Sbjct: 127 DESSNNYLCAFYMRSKEASLCLADISTGEVHLFEFTGKDTANSAINELSRFSPSEILIND 186 Query: 202 KELSHAEYKSLF-ETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTA 259 LS+ E E + + FD + + +++ ++D+ G + A Sbjct: 187 SILSNKEISGFIREKIKTSVQLLEDADFDPANHTDEVLTQFSVNSLDSLGLKPDSLSAFA 246 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTI 318 +YI +TQ R D + I AR NLE+ TL +++ SLL I Sbjct: 247 VCGLFAYIHETQKALVGRFSEITRHDADPIMTIGFTARRNLELTETLRNKQKKGSLLWVI 306 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 + T G R+ + PL + KI RL+++ F+++P+ + I+++L D+ R + Sbjct: 307 SNTKTSMGNRMLKSWLEQPLINPAKIIDRLNAVEQFVRDPVSLGEIREVLSGVYDLERLM 366 Query: 379 SRLKIGRGEPKDI---AVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 +R+ P+D+ ++ + +L+ F L ++ G + L + +E + Sbjct: 367 TRVMYRSASPRDLKSLSLTALKLPELKKLLSAF-DGKLIKDCTGRISTLDAISNLVENAI 425 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 D+ P +DGG +RDG + LD R++ K II + + E+T IKNLKI + Sbjct: 426 V----DEPPANVKDGGVIRDGFNEQLDGLRNIISGGKGIIDDIAEREKEKTGIKNLKIGY 481 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+IEVT S ++ D +I +QT++N RF T EL EN I A++ L Sbjct: 482 NRVFGYYIEVTKSYYDLIP------DNYIRKQTLANCERFITDELKVAENTILGASDKIL 535 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 IE E F + I Q + + +A ID+ + A A + NY +P I +K Sbjct: 536 TIEQEIFGEVREFIATQLRLVQETATAVAEIDVLCSYATAAIKNNYTKPEIAIDGIINIK 595 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 +GRHP+VE L QQ + F+ ND L D ++ ++TGPNM GKST++RQ ALI + Sbjct: 596 NGRHPVVE--LMQQD-EVFVPNDTYL----DLTGNRMAVITGPNMSGKSTYMRQVALITL 648 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+G +VPA YA I +VD++F+R+G++D+L +G+STFMVEM E A I+ AT S VIL Sbjct: 649 MAQIGCFVPADYAKISVVDQIFTRIGASDDLTAGQSTFMVEMSEVADIVKHATKNSLVIL 708 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNR---CRGLLATHFHELTDLSKSLKRFHNATLQV 792 DE+GRGT+T DG++IA A EY+ T+R C+ L ATH+HEL L L N ++ V Sbjct: 709 DEVGRGTSTFDGIAIARAVSEYIS-TSRSLGCKTLFATHYHELIALEDELDGIKNYSVAV 767 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 + I FL K++ G AD S+GI+V KLAGLPN +I RA +L E + ++ Sbjct: 768 KRQGDNIKFLRKIVKGGADESFGIEVAKLAGLPNKIIGRAKSLLGEME------AESIKA 821 Query: 853 YYPEIQTKESKNNLSK-NDKLFVEKIKCLNLDEMS 886 ++ + + + +D + +K++ N+DEM+ Sbjct: 822 KAAVAESDSGQISFDRISDSIVTDKLRKTNIDEMN 856 >gi|309703092|emb|CBJ02424.1| DNA mismatch repair protein [Escherichia coli ETEC H10407] Length = 853 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 314/900 (34%), Positives = 485/900 (53%), Gaps = 73/900 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTTELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFIDKPGIRITEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 740 EGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 799 Query: 843 YHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + Q D T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 800 SPNAAATQVD--------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|300120334|emb|CBK19888.2| unnamed protein product [Blastocystis hominis] Length = 1268 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 309/883 (34%), Positives = 491/883 (55%), Gaps = 80/883 (9%) Query: 26 TPMMRQYIEIKS----------INPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK 75 TP ++QY ++K + + ++F+R+GDFYE FF+DA+ S+ LGI LT RGK Sbjct: 5 TPALQQYFKLKEQYKGCCFLAKLGIEYVLFFRVGDFYEFFFNDAITMSQVLGIALTTRGK 64 Query: 76 HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIE----------SPLEAKKRGNKS- 124 + DIP+CG+P ++Y++K+I+ G ++AICEQ E +P EAK RG + Sbjct: 65 YKDHDIPLCGIPYFAIDNYLKKVIRKGLKVAICEQTEVCFGIYLNLQTPSEAKSRGKRKS 124 Query: 125 -LVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIR--TEWAIAWIDISTGIFKISTSN 181 ++ R+VVRL++ GTL ED LSP SN+L A++ R + + + IDISTG + + + Sbjct: 125 PVLERSVVRLISAGTLVEDAFLSPRQSNFLCALSSTRDNSHFGFSVIDISTGEYAVHNVD 184 Query: 182 HDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVF---FDHSISESRIA 238 +L S R DPREI+ S S+ +L L + +V + D + ES Sbjct: 185 SSQLASLFARYDPREILLSHALQSNPP-SALASFLASDSVNETRCMVTVLDDTAWESGEL 243 Query: 239 DYYNITTVDTFGS------------FSQVEKTAAAAAISYIKKTQMVNKPTIGY--PERE 284 T +DT FS++E A A + YI TQM P + E E Sbjct: 244 Q----TLIDTHSELAALSQPFREHLFSEMELDALHALLQYINTTQMGAFPRLFCLEGEEE 299 Query: 285 DIQSTLFIDSAARSNLEILR----TLSGS------REQSLLKTIDYSITGAGGRLFAERI 334 + Q +L +D + R +L + R TL+GS R + +TID ++T G RL + R+ Sbjct: 300 EDQRSLELDRSTRDSLNLTRGSRDTLTGSVLNVWQRGNAKRQTIDRTVTVMGSRLLSNRL 359 Query: 335 ASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVI 394 +SPLT +IN RLD++++FIQNP + + +LKS D RS RL + RG P+D+ VI Sbjct: 360 SSPLTQPKEINHRLDTLSYFIQNPQVTTMLLPLLKSLGDSERSFQRLVLKRGSPQDLGVI 419 Query: 395 RDGIRSGINILNL----FLKNDLPEELRGAVEKLKKLPQ-SLEKTLSSMLSDDLPTFKRD 449 RD +R+ I F + P LR ++ +K Q SL LS L++ LP D Sbjct: 420 RDMLRTTQAIYEAIHSSFSTSSNPFFLR-VLDTFEKAGQTSLLSVLSKALTESLPFSLSD 478 Query: 450 GGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSS 509 GGF+ G A LD RS+ + +++ +Q KY T LK+K +LG+F+EV +S+ Sbjct: 479 GGFIAPGYSAELDHWRSIESSNASLLSEMQAKYISLTNNAKLKVKWTESLGFFVEVPNST 538 Query: 510 ASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAI 569 L + L F+ QT+ + R+ T EL++L+N+ A +EL F L + Sbjct: 539 P--LDRSL-----FLPCQTLKSHLRYKTAELVELDNKRFGACEKVKKLELSFFNELKTLV 591 Query: 570 IEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEK-TLKQ 628 + L + +++I+D++ L+ + + Y RP ++ S+ + D RH +VE +KQ Sbjct: 592 ENEGLLLTQCNALLSILDVNCGLSRVCADFGYVRPTVNASSTLSLTDVRHLVVEDMMMKQ 651 Query: 629 QSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYA 688 + K FI N + C S ++TGPNMGGK+T LR AL VI+ QMG ++PAS Sbjct: 652 KQGKTFIPNSLHMDCQQGIRS---CIITGPNMGGKTTLLRSVALCVILGQMGCFIPASRG 708 Query: 689 HIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGL 748 IG VDK+FSRVGS+D++ + RSTF E+ ETASIL AT++S +++DE+GRGT+ +G+ Sbjct: 709 EIGTVDKIFSRVGSSDDILNNRSTFYSEISETASILRNATSRSLILVDELGRGTSVEEGV 768 Query: 749 SIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPG 808 +IA + ++++H +C+ L ATH+ ++TDL + + N + ++ ++ +++ G Sbjct: 769 AIATSVLDFIHTKIQCKTLFATHYKQVTDLVRKNTQMANFKMGAIPTDSSLLLSYRMEAG 828 Query: 809 IADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR 851 I+D SYG+ + K+AG+P +IL++ EK+ ++D R Sbjct: 829 ISDQSYGLFIAKMAGIPR-------EILESAEKMVQKMKEDGR 864 >gi|324111368|gb|EGC05350.1| DNA mismatch repair protein MutS [Escherichia fergusonii B253] Length = 853 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 312/889 (35%), Positives = 488/889 (54%), Gaps = 51/889 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R L+RL + P+D+A +R + + L L+N ++ EK+ + + L Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ-LPELRAQLENVDSAPVQALREKMGEFAE-LRD 405 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + D P RDGG + G + LDE R+L D + + L+++ E T + LK+ Sbjct: 406 LLERAIIDTPPVLVRDGGVIAPGYNEELDEWRALADGATDYLERLEVRERERTGLDTLKV 465 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + Sbjct: 466 GFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKEYEDKVLTSKGK 519 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY P + Sbjct: 520 ALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFIDKPGIR 579 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 580 ITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTALI 630 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V Sbjct: 631 ALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLV 690 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L Sbjct: 691 LMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH---NQKDM 850 + + I F+H V G A SYG+ V LAG+P VI RA L+ E + + Q D Sbjct: 751 EHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESISPNAAATQVD- 809 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 T+ S + + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 810 -------GTQMSLLSAPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|261406193|ref|YP_003242434.1| DNA mismatch repair protein MutS [Paenibacillus sp. Y412MC10] gi|261282656|gb|ACX64627.1| DNA mismatch repair protein MutS [Paenibacillus sp. Y412MC10] Length = 923 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 293/821 (35%), Positives = 458/821 (55%), Gaps = 37/821 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM+ QY+++K D+ +F+R+GDFYE+FFDDA+LAS+ L ITLT R + IPMCG Sbjct: 5 TPMIEQYLKVKEQARDAFLFFRLGDFYEMFFDDAILASKELEITLTGREGGGAEKIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YIQ+LI+ G+++AICEQ+E K +VRR +VR+VTPGT+ + +++ Sbjct: 65 VPYHSAEGYIQRLIEKGYKVAICEQMED-----ASVTKGMVRREIVRVVTPGTIMDGKVV 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST--SNHDRLISDIMRIDPREIIFSEKE 203 +NY++ V +++ D+STG +++ S+ + L +I +P EII Sbjct: 120 HDKSNNYMVCVTEAGGLMSLSACDLSTGELYVTSVPSSEEWLRDEIGIYEPSEIIGDASL 179 Query: 204 LSHAEYKSLFETLGNVAVA---QPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 LS ++L + V A + + E+ + + + Sbjct: 180 LSIISSQALPGSRNIVYTAWDRREDALVRTQFGEA------------AWARLEEERRACV 227 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 + ISY+ +TQ + + + + +D R NLE++ T+ S++ SLL +D Sbjct: 228 SLLISYLSETQKRSLGQLTQIASYEPGQYMVLDPFTRRNLELVETVRERSKKGSLLWLLD 287 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL RI PL ++I RL+++ IL ++ LK D+ R + Sbjct: 288 RTETSMGARLLRRRIDKPLLSRSRIEERLEAVEHLYNQYILREDLRMALKEIYDLERLVG 347 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G +D+ ++ +R ++ L ++ P E V + L + + + + Sbjct: 348 RIAFGSANGRDLNALKLSLRQIPSLKELCAQS--PSETLRRVAADTDVCDDLCELIENAI 405 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 D+ P RDGG ++ G LDE R KR IA L+ K T IK+LKI +N Sbjct: 406 VDEPPVSVRDGGIIKPGYHERLDEFREASTSGKRWIAELEAKERAATGIKSLKIGYNKVF 465 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IEVT S+ S L + R+ +QT++N R+ T EL + E I A + +E Sbjct: 466 GYYIEVTKSNLSSL-----PEGRYERKQTLANAERYVTPELKEKEGLILEAQEKMVDLEY 520 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 F L + + Q L ++ IA ID+ +LA ++ E + +P + ++IV+ GRH Sbjct: 521 ALFTELRDKLNTQVSRLQKLAERIAEIDVYQSLAAVSAEYRFVKPELSEGYDYIVEGGRH 580 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE +K S FIAN DL K+ + L+TGPNM GKST++RQ ALI I+AQM Sbjct: 581 PVVEAVMKDSS---FIANGTDLR----KDGSSILLITGPNMAGKSTYMRQVALISILAQM 633 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 G +VPA A I +VD++F+R+G+AD+L G+STFMVEM + + +AT +S +I+DE+G Sbjct: 634 GCFVPAERAVIPLVDRIFTRIGAADDLIGGQSTFMVEMADIQVMTEKATPRSLIIIDELG 693 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGT+T +G++IA A IEY+H+ C+ L++THFHEL L +SL N ++ V +S + + Sbjct: 694 RGTSTSEGMAIAQAVIEYVHDHIGCKALVSTHFHELAHLQESLGGLKNYSMAVQESGDKV 753 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 FL K+IPG AD SYGI +LAGLP ++I RAY +L+ E Sbjct: 754 HFLRKLIPGAADSSYGIYCARLAGLPGSIIDRAYGLLQGLE 794 >gi|324005697|gb|EGB74916.1| DNA mismatch repair protein MutS [Escherichia coli MS 57-2] Length = 853 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 314/900 (34%), Positives = 486/900 (54%), Gaps = 73/900 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLEGVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFIDKPGIRITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 740 EGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 799 Query: 843 YHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + Q D T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 800 SPNAAATQVD--------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|332638521|ref|ZP_08417384.1| DNA mismatch repair protein MutS [Weissella cibaria KACC 11862] Length = 880 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 298/818 (36%), Positives = 465/818 (56%), Gaps = 37/818 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY EIK+ PD+ +FYR+GDFYELF DDA+L S+ L +TLT+R K+ + IPM G Sbjct: 7 TPMMKQYNEIKAQYPDAFLFYRLGDFYELFNDDAVLGSQLLELTLTQRNKNSAEPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A +YI L+ G+++A+ EQ+E+P EA+ +V+R VV+LVTPGT Sbjct: 67 VPHHAAQNYIDILVDKGYKVAVVEQMENPAEAE-----GMVKREVVQLVTPGTRMRTSAD 121 Query: 146 SPTDSNYLMAVARIRTE-WAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 + ++NYL++++ + +A+ D+STG K +T + ++++I R++ +EI+ + Sbjct: 122 AAKENNYLVSLSMTPAGGFGLAYTDLSTGEVKATTVTATGGVLNEISRLETKEIV-TNAT 180 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 L + + +LG + H E+ A+ +T T +K AA Sbjct: 181 LPD-DLMANLTSLG--------ILVSHQDEEAANAETSYLTQQLTVPE----QKEAADVL 227 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 ++Y+ TQ + + +I L +D +R+NLE+ L + R +LL +D + Sbjct: 228 LAYLFATQKRSLDHLQMASSYEIAQYLKLDRNSRANLELTVNLRTQQRSGTLLWLLDNTK 287 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGR + + PL D I R D I +++ +Q+ LKS D+ R R+ Sbjct: 288 TAMGGRALKQWLEQPLLDRETIEQRYDKIGELLKDFFSRAALQETLKSVYDLERLAGRVA 347 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 G +D+ +R+ +R +I+ DL + G + + +EK +S+ ++++ Sbjct: 348 YGTANGRDLLQLRNSLRQVPDIMVTL--GDLDPAVFGDLLRRIDPVSDIEKLISTAIAEE 405 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P DGG +R G + LDE RS+ K+ +A L+ K ET I +LKI N GY+ Sbjct: 406 PPISVTDGGVIRAGYNTRLDEYRSVMKNGKQWLAELEAKERSETGISSLKIGFNKVFGYY 465 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IEVT ++ L DR+ +QT+ N RF T EL D E I A + +E + F Sbjct: 466 IEVTKANIDKL-----DPDRYTRKQTLVNAERFITPELKDREQMILEAETKSSDLEYQLF 520 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 + I + + +A +D+ +LA +A++ + RP + + ++KDGRHP+V Sbjct: 521 TEVREQIKNNITRIQKLAATLAELDVLQSLATVAEDYKFTRPELTDKQRLVIKDGRHPVV 580 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 EK L QS ++AND + D++ + L+TGPNM GKST++RQ AL V+MAQ+GSY Sbjct: 581 EKVLGHQS---YVANDVFM----DEDE-TIMLITGPNMSGKSTYMRQLALTVVMAQIGSY 632 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPAS A + I D++F+R+G+AD+L SG STFMVEM E + + AT +S ++ DE+GRGT Sbjct: 633 VPASEAELPIFDQIFTRIGAADDLISGNSTFMVEMSEANTAIQNATKRSLILFDELGRGT 692 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFL 802 AT DG+++A A IE++H + + L +TH+HELT LS L N + ++ N ++F Sbjct: 693 ATYDGMALAQAIIEHVHNNTKAKTLFSTHYHELTALSDELPNLRNVHVGATEENGELVFS 752 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 HKV+ G AD SYGI V KLAGLP+++I RA DIL E Sbjct: 753 HKVLTGPADQSYGINVAKLAGLPDSLIDRAADILANLE 790 >gi|332344615|gb|AEE57949.1| DNA mismatch repair protein MutS [Escherichia coli UMNK88] Length = 853 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 314/900 (34%), Positives = 485/900 (53%), Gaps = 73/900 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAGLQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFIDKPGIRITEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 740 EGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 799 Query: 843 YHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + Q D T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 800 SPNAAATQVD--------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|261822576|ref|YP_003260682.1| DNA mismatch repair protein MutS [Pectobacterium wasabiae WPP163] gi|261606589|gb|ACX89075.1| DNA mismatch repair protein MutS [Pectobacterium wasabiae WPP163] Length = 854 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 303/885 (34%), Positives = 477/885 (53%), Gaps = 44/885 (4%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 E++ + TPMM+QY +K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G Sbjct: 6 EKDFTAHTPMMQQYFRLKAEHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAG 65 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM GVP H +Y+ +L+++G +AICEQI P +K V R VVR+VTPGT Sbjct: 66 EPIPMAGVPHHAVENYLARLVQMGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGT 120 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E+ Sbjct: 121 ISDEALLQEKQDNLLAAIWQDGRGFGYATLDISSGRFRVSEPADRETMAAELQRTNPAEL 180 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVE 256 ++ E E L E + +P F+ + ++ + + FG +++ Sbjct: 181 LYPES----FESMDLIENRHGLR-RRPLWEFEPDTARQQLNLQFGTRDLTGFGVEQAKLA 235 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 AA + Y K TQ + P I E Q + +D+A R NLE+ + LSG E +L Sbjct: 236 LRAAGCLLQYAKDTQRTSLPHIRGITMERQQDGIIMDAATRRNLELTQNLSGGVENTLAA 295 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINP-IQKILKSSPDVP 375 +D ++T G R+ I P D + R +I+ + I P +Q L+ D+ Sbjct: 296 VLDCTVTAMGSRMLKRWIHMPSRDIDALKQRQQAISALQE----ITPDLQPYLRQVGDLE 351 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEK 433 R L+RL + P+D+A +R + I L+ D L + + +L LE+ Sbjct: 352 RILARLALRTARPRDLARMRHAFQQFPAIREQLAPLEADSVRRLVSQIGQFDELRDLLER 411 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + + P RDGG + G A LDE R+L D + + L+++ E+ + LK+ Sbjct: 412 AVV----EAPPVLVRDGGVIAPGYHAELDEWRALADGASDYLDRLEIREREKLGLDTLKV 467 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GY+I+V+ + ++ ++ RQT+ N R+ EL + E+++ + Sbjct: 468 GFNGVHGYYIQVSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSKGK 521 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E ++ L + ++ L ++ +A +D+ LA A NY P++ + Sbjct: 522 ALALEKALYDELFDLLLPHLAELQQSATALAELDVLANLAERADTLNYICPMLSDKPGIK 581 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + GRHP+VE+ L++ PFI+N LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 582 ITGGRHPVVEQVLRE----PFISNPLSLSPQR-----RMLIITGPNMGGKSTYMRQAALI 632 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 V+MA +G +VPA A IG VD++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V Sbjct: 633 VLMAHIGCFVPADLAVIGPVDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLV 692 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L Sbjct: 693 LMDEIGRGTSTYDGLSLAWACAENLANRIKAMTLFATHYFELTTLPEKMEGVVNVHLDAR 752 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 + + I F+H V G A SYG+ V LAG+P VI RA LK E L ++ Sbjct: 753 EHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKDVIKRARQKLKELETLSNNASSS---- 808 Query: 854 YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 I + + +E ++ ++ D ++P AL LY +K Sbjct: 809 --HIDGAQLALLNADEPSPAMEALEAIDPDALTPRQALDWLYQLK 851 >gi|332999477|gb|EGK19062.1| DNA mismatch repair protein MutS [Shigella flexneri VA-6] Length = 853 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 314/900 (34%), Positives = 485/900 (53%), Gaps = 73/900 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFAELRDLLERAIIDTPPVLLRDGGVIASGYNEELDEWRALADGATDYLERLEVRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFIDKPGIRITEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 740 EGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 799 Query: 843 YHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + Q D T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 800 SPNAAATQVD--------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|15832843|ref|NP_311616.1| DNA mismatch repair protein MutS [Escherichia coli O157:H7 str. Sakai] gi|168749939|ref|ZP_02774961.1| DNA mismatch repair protein MutS [Escherichia coli O157:H7 str. EC4113] gi|168755480|ref|ZP_02780487.1| DNA mismatch repair protein MutS [Escherichia coli O157:H7 str. EC4401] gi|168768827|ref|ZP_02793834.1| DNA mismatch repair protein MutS [Escherichia coli O157:H7 str. EC4486] gi|168774732|ref|ZP_02799739.1| DNA mismatch repair protein MutS [Escherichia coli O157:H7 str. EC4196] gi|168778718|ref|ZP_02803725.1| DNA mismatch repair protein MutS [Escherichia coli O157:H7 str. EC4076] gi|168787991|ref|ZP_02812998.1| DNA mismatch repair protein MutS [Escherichia coli O157:H7 str. EC869] gi|168800184|ref|ZP_02825191.1| DNA mismatch repair protein MutS [Escherichia coli O157:H7 str. EC508] gi|188493251|ref|ZP_03000521.1| DNA mismatch repair protein MutS [Escherichia coli 53638] gi|191166787|ref|ZP_03028613.1| DNA mismatch repair protein MutS [Escherichia coli B7A] gi|193069637|ref|ZP_03050589.1| DNA mismatch repair protein MutS [Escherichia coli E110019] gi|195938486|ref|ZP_03083868.1| DNA mismatch repair protein [Escherichia coli O157:H7 str. EC4024] gi|208807935|ref|ZP_03250272.1| DNA mismatch repair protein MutS [Escherichia coli O157:H7 str. EC4206] gi|208814135|ref|ZP_03255464.1| DNA mismatch repair protein MutS [Escherichia coli O157:H7 str. EC4045] gi|208819414|ref|ZP_03259734.1| DNA mismatch repair protein MutS [Escherichia coli O157:H7 str. EC4042] gi|209399182|ref|YP_002272198.1| DNA mismatch repair protein MutS [Escherichia coli O157:H7 str. EC4115] gi|218555277|ref|YP_002388190.1| DNA mismatch repair protein MutS [Escherichia coli IAI1] gi|254794675|ref|YP_003079512.1| DNA mismatch repair protein MutS [Escherichia coli O157:H7 str. TW14359] gi|256019486|ref|ZP_05433351.1| DNA mismatch repair protein MutS [Shigella sp. D9] gi|261226029|ref|ZP_05940310.1| methyl-directed mismatch repair protein [Escherichia coli O157:H7 str. FRIK2000] gi|261256714|ref|ZP_05949247.1| methyl-directed mismatch repair protein [Escherichia coli O157:H7 str. FRIK966] gi|291284062|ref|YP_003500880.1| DNA mismatch repair protein mutS [Escherichia coli O55:H7 str. CB9615] gi|293449050|ref|ZP_06663471.1| DNA mismatch repair protein MutS [Escherichia coli B088] gi|300815861|ref|ZP_07096085.1| DNA mismatch repair protein MutS [Escherichia coli MS 107-1] gi|300820510|ref|ZP_07100661.1| DNA mismatch repair protein MutS [Escherichia coli MS 119-7] gi|307312843|ref|ZP_07592473.1| DNA mismatch repair protein MutS [Escherichia coli W] gi|331654213|ref|ZP_08355213.1| DNA mismatch repair protein MutS [Escherichia coli M718] gi|331669468|ref|ZP_08370314.1| DNA mismatch repair protein MutS [Escherichia coli TA271] gi|331678709|ref|ZP_08379383.1| DNA mismatch repair protein MutS [Escherichia coli H591] gi|332280608|ref|ZP_08393021.1| methyl-directed mismatch repair protein [Shigella sp. D9] gi|13959406|sp|Q9S6P8|MUTS_ECO57 RecName: Full=DNA mismatch repair protein mutS gi|226723058|sp|B7LXE0|MUTS_ECO8A RecName: Full=DNA mismatch repair protein mutS gi|238058942|sp|B5Z397|MUTS_ECO5E RecName: Full=DNA mismatch repair protein mutS gi|4887554|emb|CAB43497.1| mismatch repair protein [Escherichia coli] gi|13363060|dbj|BAB37012.1| MutS protein [Escherichia coli O157:H7 str. Sakai] gi|187769600|gb|EDU33444.1| DNA mismatch repair protein MutS [Escherichia coli O157:H7 str. EC4196] gi|188015814|gb|EDU53936.1| DNA mismatch repair protein MutS [Escherichia coli O157:H7 str. EC4113] gi|188488450|gb|EDU63553.1| DNA mismatch repair protein MutS [Escherichia coli 53638] gi|189003145|gb|EDU72131.1| DNA mismatch repair protein MutS [Escherichia coli O157:H7 str. EC4076] gi|189357264|gb|EDU75683.1| DNA mismatch repair protein MutS [Escherichia coli O157:H7 str. EC4401] gi|189362111|gb|EDU80530.1| DNA mismatch repair protein MutS [Escherichia coli O157:H7 str. EC4486] gi|189372119|gb|EDU90535.1| DNA mismatch repair protein MutS [Escherichia coli O157:H7 str. EC869] gi|189377459|gb|EDU95875.1| DNA mismatch repair protein MutS [Escherichia coli O157:H7 str. EC508] gi|190903158|gb|EDV62881.1| DNA mismatch repair protein MutS [Escherichia coli B7A] gi|192957000|gb|EDV87451.1| DNA mismatch repair protein MutS [Escherichia coli E110019] gi|208727736|gb|EDZ77337.1| DNA mismatch repair protein MutS [Escherichia coli O157:H7 str. EC4206] gi|208735412|gb|EDZ84099.1| DNA mismatch repair protein MutS [Escherichia coli O157:H7 str. EC4045] gi|208739537|gb|EDZ87219.1| DNA mismatch repair protein MutS [Escherichia coli O157:H7 str. EC4042] gi|209160582|gb|ACI38015.1| DNA mismatch repair protein MutS [Escherichia coli O157:H7 str. EC4115] gi|209761768|gb|ACI79196.1| MutS protein [Escherichia coli] gi|209761770|gb|ACI79197.1| MutS protein [Escherichia coli] gi|209761772|gb|ACI79198.1| MutS protein [Escherichia coli] gi|209761776|gb|ACI79200.1| MutS protein [Escherichia coli] gi|218362045|emb|CAQ99652.1| methyl-directed mismatch repair protein [Escherichia coli IAI1] gi|254594075|gb|ACT73436.1| methyl-directed mismatch repair protein [Escherichia coli O157:H7 str. TW14359] gi|290763935|gb|ADD57896.1| DNA mismatch repair protein mutS [Escherichia coli O55:H7 str. CB9615] gi|291322140|gb|EFE61569.1| DNA mismatch repair protein MutS [Escherichia coli B088] gi|300526774|gb|EFK47843.1| DNA mismatch repair protein MutS [Escherichia coli MS 119-7] gi|300531790|gb|EFK52852.1| DNA mismatch repair protein MutS [Escherichia coli MS 107-1] gi|306907278|gb|EFN37784.1| DNA mismatch repair protein MutS [Escherichia coli W] gi|315062010|gb|ADT76337.1| methyl-directed mismatch repair protein [Escherichia coli W] gi|320640378|gb|EFX09917.1| DNA mismatch repair protein MutS [Escherichia coli O157:H7 str. G5101] gi|320645925|gb|EFX14906.1| DNA mismatch repair protein MutS [Escherichia coli O157:H- str. 493-89] gi|320651225|gb|EFX19660.1| DNA mismatch repair protein MutS [Escherichia coli O157:H- str. H 2687] gi|320656775|gb|EFX24663.1| DNA mismatch repair protein MutS [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662317|gb|EFX29714.1| DNA mismatch repair protein MutS [Escherichia coli O55:H7 str. USDA 5905] gi|320667369|gb|EFX34327.1| DNA mismatch repair protein MutS [Escherichia coli O157:H7 str. LSU-61] gi|323377407|gb|ADX49675.1| DNA mismatch repair protein MutS [Escherichia coli KO11] gi|323935710|gb|EGB32024.1| DNA mismatch repair protein MutS [Escherichia coli E1520] gi|323946385|gb|EGB42413.1| DNA mismatch repair protein MutS [Escherichia coli H120] gi|324119983|gb|EGC13861.1| DNA mismatch repair protein MutS [Escherichia coli E1167] gi|326339197|gb|EGD63012.1| DNA mismatch repair protein MutS [Escherichia coli O157:H7 str. 1044] gi|326342920|gb|EGD66688.1| DNA mismatch repair protein MutS [Escherichia coli O157:H7 str. 1125] gi|331047595|gb|EGI19672.1| DNA mismatch repair protein MutS [Escherichia coli M718] gi|331063136|gb|EGI35049.1| DNA mismatch repair protein MutS [Escherichia coli TA271] gi|331073539|gb|EGI44860.1| DNA mismatch repair protein MutS [Escherichia coli H591] gi|332087463|gb|EGI92591.1| DNA mismatch repair protein MutS [Shigella boydii 5216-82] gi|332102960|gb|EGJ06306.1| methyl-directed mismatch repair protein [Shigella sp. D9] Length = 853 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 314/900 (34%), Positives = 485/900 (53%), Gaps = 73/900 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFIDKPGIRITEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 740 EGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 799 Query: 843 YHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + Q D T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 800 SPNAAATQVD--------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|260654148|ref|ZP_05859638.1| DNA mismatch repair protein MutS [Jonquetella anthropi E3_33 E1] gi|260631133|gb|EEX49327.1| DNA mismatch repair protein MutS [Jonquetella anthropi E3_33 E1] Length = 841 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 318/881 (36%), Positives = 480/881 (54%), Gaps = 65/881 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY+E K+ PD L+ +RMGDFYE FFDDA SR L +TLT R K +PM G Sbjct: 2 TPMMRQYLEWKNKYPDCLLLFRMGDFYETFFDDARTVSRELDLTLTARDGD--KKLPMAG 59 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT-LTEDQL 144 VP H + Y+ +LI+ G+R+AICEQ+ P ++LV R V+R+VTPGT L ED Sbjct: 60 VPYHAVDGYLARLIEKGYRVAICEQMSEP------DGRTLVDREVIRVVTPGTWLPEDAS 113 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 L+ + L AV + WA A++ S+ +++ + D ++ I PRE++ Sbjct: 114 LNAS----LAAVLPGKETWAAAFLAPSSPHVRVALAGPDEILGLITGEAPRELLVPASSC 169 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT-AAAAA 263 A + L P F + +SR+A +++ + FG + AAAAA Sbjct: 170 PPALRGGSWSVL-----ELPKSEFSPTSGQSRLAARWDLRDLAPFGLPENDPRIGAAAAA 224 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 +SY+++T + +S L +D +A+ NLE+L G+ SL ++ T Sbjct: 225 VSYMEETSFSKISHLQGIVCLTSESYLHLDQSAQMNLELLN--GGA---SLFAFLNRCRT 279 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFI--QNPILINPIQKILKSSPDVPRSLSRL 381 AG RL + I PL D +N RLD++ + QN +++ L D+ RS++RL Sbjct: 280 TAGRRLLQDWIVRPLRDERAVNRRLDAVEALLAAQN---RRDLEEGLACCRDLERSVARL 336 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ-----SLEKTLS 436 +G G P+D+A IRD + ++ ++ P V L LP L L+ Sbjct: 337 HLGTGGPRDLAAIRDTL----SVYPAVFESAAP------VRDLVGLPDPALTGELASRLA 386 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 S L +P + G D LD RSL D + + + K T + LK+ +N Sbjct: 387 SSLVQSVPRTIGATPLVASGVDEELDSWRSLNDGGQEWLDAYLEKERAATGVSKLKVGYN 446 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 G+++E++ +A+ K DRF RQT+ N RF T EL + E+R +A + Sbjct: 447 RVFGFYLELSKGAAAEAKL----PDRFERRQTLVNGERFITPELKEYEDRRLSAESHIKD 502 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 IE F+ L A+++ + +L Q +A +D+ + A +A YCRP+ + ++ Sbjct: 503 IENRIFDELCQAVMDATAALQQTGQALARLDVLASFADVASVGQYCRPVF-SPDRLEIRA 561 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE +L+ P++ ND + + ++ L+TGPNM GKST+LR A+I IM Sbjct: 562 GRHPVVEASLR---GVPYVPNDLTMD-----RTRRVGLVTGPNMAGKSTYLRAAAIIQIM 613 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQMG++VPA A + +VD+LF+R+G+ D L+ G STFMVEMIETA+ILN AT+ S VILD Sbjct: 614 AQMGAFVPAEKASLPLVDRLFTRIGARDELSRGNSTFMVEMIETAAILNNATSDSLVILD 673 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRG--LLATHFHELTDLSKSLKRFHNATLQVSD 794 E+GRGT+T DG+SIAWA +EYLH R L ATH+HELT L ++L N ++ VS+ Sbjct: 674 EVGRGTSTYDGMSIAWAALEYLHGQGGFRPWVLFATHYHELTRLEETLDGLFNLSMAVSE 733 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 ++ + FLH V G AD SYG++V +LAGLP V+ RA ++L+ E + + Sbjct: 734 ADGEVRFLHHVQEGPADRSYGVEVARLAGLPRVVVRRASELLEKLEGDAPKGRSEA--MK 791 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 P IQ + + D+L ++++ L D+M+P AL LY Sbjct: 792 PSIQMELFD---LEGDRL-IDRLSALRPDDMTPKEALDCLY 828 >gi|53715862|ref|YP_101854.1| DNA mismatch repair protein MutS [Bacteroides fragilis YCH46] gi|81690525|sp|Q64MG7|MUTS_BACFR RecName: Full=DNA mismatch repair protein mutS gi|52218727|dbj|BAD51320.1| DNA mismatch repair protein mutS [Bacteroides fragilis YCH46] Length = 862 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 302/884 (34%), Positives = 490/884 (55%), Gaps = 41/884 (4%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+Q++++K+ +PD+++ +R GDFYE + DA++A+ LGITLTKR GK + M G P Sbjct: 1 MMKQFLDLKAKHPDAVMLFRCGDFYETYSTDAIIAAEILGITLTKRANGKGKTVEMAGFP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H + Y+ KLI+ G R+AIC+Q+E P KK LV+R + LVTPG D +L+ Sbjct: 61 HHALDTYLPKLIRAGKRVAICDQLEDPKTTKK-----LVKRGITELVTPGVSINDNVLNY 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF--SEKELS 205 ++N+L AV ++ IA++DISTG F + D + + P+EI+F ++ + Sbjct: 116 KENNFLAAVHFGKSACGIAFLDISTGEFLTAEGPFDYVDKLLNNFAPKEILFERGKRGMF 175 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI- 264 + S F T + F S S ++ ++ + FG A+ AI Sbjct: 176 EGNFGSKFFTF-----ELDDWVFTESSSREKLLKHFETKNLKGFGVEHLKNGIIASGAIL 230 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 Y+ T+ I R + + +D +LE++ +++ SLL ID +I+ Sbjct: 231 QYLDMTEHTQVGHITSLARIEEDKYVRLDKFTVRSLELIGSMNDGG-SSLLHVIDKTISP 289 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 G RL + PL D IN RL+ + +F + P I+ L D+ R +S++ +G Sbjct: 290 MGARLLKRWMVFPLKDEKPINDRLNVVEYFFRKPDFRELIEDELHRIGDLERIISKVAVG 349 Query: 385 RGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLP 444 R P+++ ++ +++ I + D P L E+L L S+ + +++D P Sbjct: 350 RVSPREVVQLKVALQAIEPIKEACQQADNPS-LNRIGEQLN-LCISIRDRIEKEINNDPP 407 Query: 445 TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIE 504 GG ++DG D LDE R + K + +Q + +E T I +LKI +N+ GY+IE Sbjct: 408 LLINKGGVIKDGVDTELDELRQIAYSGKDYLLKIQQRESELTGIPSLKIAYNSVFGYYIE 467 Query: 505 VTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEI 564 V + + KD + +I +QT+ N R+ T EL + E +I A + L++E + Sbjct: 468 VRN-----VHKD-KVPQEWIRKQTLVNAERYITQELKEYEEKILGAEDKILVLETRLYTE 521 Query: 565 LSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEK 624 L A+ E ++ + IA ID ++ A +AKE NY RP+I+++ ++ GRHP++EK Sbjct: 522 LVQALSEFIPAIQINANQIARIDCLLSFANVAKENNYIRPVIEDNDVLDIRQGRHPVIEK 581 Query: 625 TLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684 L + +IAND L D + ++ ++TGPNM GKS LRQ ALI ++AQ+GS+VP Sbjct: 582 QLP--IGEKYIANDVLL----DNATQQVIIITGPNMAGKSALLRQTALITLLAQIGSFVP 635 Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744 A AHIG+VDK+F+RVG++DN++ G STFMVEM E + ILN +++S V+ DE+GRGT+T Sbjct: 636 AESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEASDILNNISSRSLVLFDELGRGTST 695 Query: 745 LDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFL 802 DG+SIAWA +EY+HE + R L ATH+HEL ++ KS KR N + V + + +IFL Sbjct: 696 YDGISIAWAIVEYIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEVDNKVIFL 755 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKES 862 K+ G ++HS+GI V K+AG+P +++ RA +ILK E N++ P + E+ Sbjct: 756 RKLERGGSEHSFGIHVAKMAGMPKSIVKRANEILKQLES---DNRQQGISGKPLAEVSEN 812 Query: 863 KNNLSKNDKLFVEKIKC--------LNLDEMSPLTALKTLYAVK 898 + + + + I C L+++ ++P+ AL L +K Sbjct: 813 RGGMQLSFFQLDDPILCQIRDEILHLDVNNLTPIEALNKLNDIK 856 >gi|300691868|ref|YP_003752863.1| methyl-directed DNA mismatch repair protein [Ralstonia solanacearum PSI07] gi|299078928|emb|CBJ51588.1| methyl-directed DNA mismatch repair protein [Ralstonia solanacearum PSI07] Length = 882 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 310/892 (34%), Positives = 468/892 (52%), Gaps = 55/892 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+++KS +P +LVFYRMGDFYELFF+DA A+R L ITLT RG G I M G Sbjct: 22 TPMMQQYLKLKSAHPHTLVFYRMGDFYELFFEDAEKAARLLDITLTSRGTTNGLPIRMAG 81 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H Y+ KL+K+G +AICEQI P K V R VVR+VTPGTLT+ LL Sbjct: 82 VPFHAVEQYLAKLVKLGESVAICEQIGDPAT-----TKGPVERKVVRVVTPGTLTDAALL 136 Query: 146 SPTDSNYLMAVARIRTEWA------IAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 S +N+L+A+A+I + +AW+++ G ++ + ++L ++ RI P E++ Sbjct: 137 SDKVNNHLLAIAQIPGKRGAAPLVGLAWLNLVGGELRLMECSAEQLDRELERIRPAEVLA 196 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 + L+ Y L P+ FD R+ + + ++ FG + A Sbjct: 197 DDATLNAIAYDVARTRL-------PDWHFDVEAGARRLREQLGVASLVAFGGETLTAALA 249 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTL-----FI--DSAARSNLEILRTLSGSREQ 312 AA A+ T G R I T+ FI D+A R NLE+ TL G Sbjct: 250 AAGALLNYAAA------TQGQSLRHVIGLTVEHESEFIGLDTATRRNLELTETLRGQESP 303 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 +L +D T G RL + PL D R +I + ++ L++ Sbjct: 304 TLFSLLDTCATSMGSRLLRHWLHHPLRDRAVPQARQQAIEVLLAGDW--QSLRGTLRTLS 361 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE 432 DV R RL + P+D++ +RD + + + ++D + L L +P+ Sbjct: 362 DVERITGRLALLSARPRDLSSLRDTLARLPEVRDQLPQSDAAQLLDDLHADLA-IPEDAH 420 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 L + + RDGG + G DA LDE R + + + + L+ + E T I NL+ Sbjct: 421 ALLQRAVMAEPAAMVRDGGVVARGYDADLDELRDISENCGQFLVDLEARERERTGIANLR 480 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 +++N G++IEVT+ A+ + D + RQT+ N R+ T EL E++ +A + Sbjct: 481 VEYNRVHGFYIEVTNGQAAKVPDD------YRRRQTLKNAERYITPELKAFEDKALSAQD 534 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 AL E +E L ++ + + +A D+ LA A ++ RP + ++ Sbjct: 535 RALSREKYLYEDLLQKLLPHLPAFKRIAAALAQADVLATLAERAHALSWSRPALTDAPGI 594 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 + RHP+VE+ ++Q F+ANDC L + + KL L+TGPNMGGKSTF+RQ AL Sbjct: 595 ELIRARHPVVEQQVEQ-----FVANDCAL-----QETRKLLLITGPNMGGKSTFMRQTAL 644 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 +V++A +G++VPA A IG +D++F+R+G+AD+LA GRSTFMVEM E A+IL++AT S Sbjct: 645 VVLLAYVGAFVPADAATIGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILHRATPNSL 704 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 V++DEIGRGT+T DGL++AWA +L NR L ATH+ ELT L + + N L Sbjct: 705 VLMDEIGRGTSTFDGLALAWAIARHLLSHNRSHTLFATHYFELTQLPQEFAQAANVHLSA 764 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 + +GI+FLH V G A SYG+QV +LAG+P VI A L E+ +L Sbjct: 765 VEHGDGIVFLHAVQEGPASQSYGLQVAQLAGVPQPVIRAARKRLAWLEQHSADTGATPQL 824 Query: 853 YYPEIQTKESKNNLSK-----NDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + + S ++ ++ E + + DEM+P AL LY +KA Sbjct: 825 DLFALPSDPSDDDTAEAAAPVASSALTEALAGIAPDEMTPREALDALYRLKA 876 >gi|261749536|ref|YP_003257222.1| putative DNA mismatch repair protein MutS [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497629|gb|ACX84079.1| putative DNA mismatch repair protein MutS [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 840 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 292/823 (35%), Positives = 468/823 (56%), Gaps = 30/823 (3%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TP+++QY +IK+ +PD+++ +++GDFYE F +DA+ S+ L I LT+R + K Sbjct: 11 KEETPLVKQYNDIKAKHPDTILLFQVGDFYETFGEDAIKCSKILDIVLTRRSNN-HKHTH 69 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 + G P H+ N Y+ +LI+ GHR+AIC+Q+E P K+G K++V+R V+ LVTPG ++ Sbjct: 70 LAGFPYHSLNTYLPRLIRSGHRVAICDQLEEP----KKG-KNIVKRGVIELVTPGIAIDE 124 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK 202 +L +N+L ++ + ++++DISTG F I + L+ + +P EIIF K Sbjct: 125 NILQTKSNNFLASIHADKKYLGLSFLDISTGEFFIVEDTKENLLHYLKHFNPSEIIFQRK 184 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAAA 261 E + E LF+ ++ + + F++ + ++ ++ ++ FG ++ A+ Sbjct: 185 EKKYFE--ELFQNKYYTSLME-DWMFNYPFAYEKLISHFQTNSLKGFGIEDLKLGIIASG 241 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 +SY+ TQ I +R + ++ID NLEI L+ + SL+ ID + Sbjct: 242 VILSYLYDTQHYKIKHISNIKRIKKEEHMWIDDFTFQNLEIFHGLN-KQGVSLIDIIDQT 300 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +T G RL I PL + I R + N + + IQK LK D+ R +S++ Sbjct: 301 LTPMGSRLLKHWIYFPLINILSIQRRHQIVEELFSNISIRDFIQKKLKEIYDIERMISKM 360 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFL--KNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 IG+ P++I + + + I +FL ++ + EL + + + K ++ + Sbjct: 361 AIGKISPREIITLHKSLTAIYEIQKIFLSQQSKILLELGNSFQNC----HIISKKITETI 416 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 D P G + G LD+ R L K + L+ T I NLKI +NN Sbjct: 417 HPDPPNHIEKGNVIVKGFSQELDKIRFLYFSKKEYLEKLRSIEQSNTGILNLKIGYNNIF 476 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GYF EV S+ K + +I +QT++N R+TT EL + E +I N+ +E Sbjct: 477 GYFFEVKST------KKHKIPSHWIRKQTLTNSERYTTEELKNYELQILNSEQKIFSLEK 530 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F L N +++ + L +++IA +D+ + +I A E NY +P I++S +K GRH Sbjct: 531 EIFHNLINKLLKYIKPLQKNAKIIAKLDVLCSFSISALENNYVKPEINHSFELCIKKGRH 590 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P++E+ + S +I ND L +K ++ ++TGPNM GKS LRQ A+I++MA + Sbjct: 591 PVIERQFISKIS--YIPNDLFL----NKTDQQIMIITGPNMSGKSAILRQTAIIILMAHI 644 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPA YA +G+VDK+FSRVG++DN++ G STFMVEM ETA+ILN + +SF+ILDEIG Sbjct: 645 GSFVPAQYAKMGLVDKIFSRVGASDNISLGESTFMVEMNETANILNNLSKRSFLILDEIG 704 Query: 740 RGTATLDGLSIAWATIEYLHETN-RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 RGT+T DG+S+AW+ +E+LHE + R L ATH+HEL +S KR N + V NE Sbjct: 705 RGTSTYDGISLAWSIVEFLHENSFRPLTLFATHYHELNKMSSFFKRIQNYHISVKKINEN 764 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 IIF+ +I G ++HS+GI V K++G+P VI RA +ILKT +K Sbjct: 765 IIFMRTLIDGGSEHSFGIHVAKISGMPTRVIHRAKEILKTLDK 807 >gi|170694936|ref|ZP_02886085.1| DNA mismatch repair protein MutS [Burkholderia graminis C4D1M] gi|170140034|gb|EDT08213.1| DNA mismatch repair protein MutS [Burkholderia graminis C4D1M] Length = 893 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 310/906 (34%), Positives = 472/906 (52%), Gaps = 54/906 (5%) Query: 15 QIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRG 74 Q ++ TPMM+QY+ IK+ +P +LVFYRMGDFYELFFDDA A+R L +TLT+RG Sbjct: 4 QTAAASDVAQHTPMMQQYLRIKAEHPGTLVFYRMGDFYELFFDDAEKAARLLDLTLTQRG 63 Query: 75 KHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLV 134 G I M GVP H Y+ KL+K+G +AICEQI P +K V R VVR+V Sbjct: 64 ASAGNPIKMAGVPHHAVEQYLAKLVKLGESVAICEQIGDPAT-----SKGPVERKVVRVV 118 Query: 135 TPGTLTEDQLLSPTDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTSNHDRLISD 188 TPGTLT+ LLS +L+A+ + T +AW+++++G +++ D++ + Sbjct: 119 TPGTLTDAALLSDKSDVFLLAMCVAHNRRGVATSVGLAWLNLASGALRLAEVAPDQVAAA 178 Query: 189 IMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVD 247 + RIDP EI+ ++ + A+ S G A+ + P FD + R+ D + +D Sbjct: 179 LERIDPAEILVAD---TTADSTSWTPPTGARALTRVPGWHFDVASGTQRLCDQLEVAGLD 235 Query: 248 TFGSFS------QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLE 301 FG+ AA + ++ + V + Y E E I +D A R NLE Sbjct: 236 GFGAHPLTCACGAAGALLLYAAATQGQQLRHVRSLKVEY-ESEYIG----LDPATRRNLE 290 Query: 302 ILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL- 360 I +TL G+ +L +D T G RL + P +S R +I + P Sbjct: 291 ITQTLRGTESPTLCSLVDTCCTTMGSRLLRHWLHHPPRESAVARARQQAIGALLDAPAGA 350 Query: 361 ---INPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEEL 417 ++ ++ +L+ D+ R RL + P+D++ +RD + + + E Sbjct: 351 GTDVDSLRGVLRHISDIERITGRLALLSARPRDLSSLRDTFIALPELRARLVAVSSNAES 410 Query: 418 RGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIAS 477 ++ + PQ+ + L+ ++ + RDGG + G DA LDE R + + + + Sbjct: 411 LARIDASLEPPQACVELLTRAIAQEPAAMVRDGGVIARGYDAELDELRDISENCGQFLID 470 Query: 478 LQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTT 537 L+ + T I NL++++N G++IEVT + D + RQT+ N R+ T Sbjct: 471 LETRERARTGIGNLRVEYNKVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYIT 524 Query: 538 LELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAK 597 EL E++ +A AL E ++ L A++ + +A +D+ A A A+ Sbjct: 525 PELKTFEDKALSAQERALARERSLYDSLLQALLPFIPDCQRVASALAELDLLAAFAERAR 584 Query: 598 EQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTG 657 ++ P ++ GRHP+VE ++Q FIANDC L+ KL L+TG Sbjct: 585 ALDWVAPSFSLDAGIEIEQGRHPVVEAQVEQ-----FIANDCTLT-----PERKLLLITG 634 Query: 658 PNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEM 717 PNMGGKSTF+RQ ALI ++A +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM Sbjct: 635 PNMGGKSTFMRQTALIALLAYVGSYVPARRAAFGPIDRIFTRIGAADDLAGGRSTFMVEM 694 Query: 718 IETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTD 777 E A+ILN AT QS V++DEIGRGT+T DGL++AWA +L N C L ATH+ ELT Sbjct: 695 TEAAAILNDATPQSLVLMDEIGRGTSTFDGLALAWAIARHLLAHNGCHTLFATHYFELTQ 754 Query: 778 LSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILK 837 L + N L + GI+FLH V G A+ SYG+QV +LAG+PN VI A L Sbjct: 755 LPAEFPQAANVHLSAVEHGHGIVFLHAVNEGPANQSYGLQVAQLAGVPNAVIRAARKHLA 814 Query: 838 TFEKLYHHN---QKDM-----RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLT 889 E+ Q D+ + + + N S + VE+++ ++ +++ P Sbjct: 815 YLEQQSAGQPAPQLDLFAAPSPMLLEDADDEPQAANASPAMQALVERLRGIDPNDLRPRE 874 Query: 890 ALKTLY 895 AL LY Sbjct: 875 ALDLLY 880 >gi|115352175|ref|YP_774014.1| DNA mismatch repair protein MutS [Burkholderia ambifaria AMMD] gi|123128122|sp|Q0BDU3|MUTS_BURCM RecName: Full=DNA mismatch repair protein mutS gi|115282163|gb|ABI87680.1| DNA mismatch repair protein MutS [Burkholderia ambifaria AMMD] Length = 886 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 311/902 (34%), Positives = 464/902 (51%), Gaps = 57/902 (6%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E TPMM+QY+ IK+ +PD+LVFYRMGDFYELFF+DA A+R L +TLT+RG G Sbjct: 7 EAFAGHTPMMQQYLRIKADHPDTLVFYRMGDFYELFFEDAEKAARLLDLTLTQRGASAGT 66 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 I M GVP H Y+ KL+K+G +AICEQI P +K V R VVR+VTPGTL Sbjct: 67 PIKMAGVPHHAVEQYLAKLVKMGESVAICEQIGDPAT-----SKGPVERKVVRVVTPGTL 121 Query: 140 TEDQLLSPTDSNYLMAVAR------IRTEWAIAWIDISTGIFKISTSNHDRLISDIMRID 193 T+ LLS + YL+A+ + +AW+++++G +++ D+L + + RI Sbjct: 122 TDAALLSDKNDVYLLAMCTGHNKRGVAVNIGLAWLNLASGALRLAEIEPDQLGTALERIR 181 Query: 194 PREIIFSEKELSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFGSF 252 P EI+ ++ G A+ + P FD + R+ D ++ +D FG+ Sbjct: 182 PAEILTADGATDAVPA-------GAGAIKRVPAWHFDIASGTQRLCDQLDVAGLDGFGAH 234 Query: 253 SQVEKTAAAAAISYIKK-TQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 S AA A+ TQ + + E+ + +D A R NLE+ TL G+ Sbjct: 235 SLTSACGAAGALLLYAAATQGQQLRHVRSLKVENETEYIGLDPATRRNLELTETLRGTES 294 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPI--LINPIQKILK 369 +L +D T G RL + P S +R +I + P ++ ++ L+ Sbjct: 295 PTLYSLLDTCCTTMGSRLLRHWLHHPPRASVAAQSRQQAIGALLDAPADASLDALRSALR 354 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRD------GIRSGINILNLFLKNDLPEELRGAVEK 423 DV R RL + P+D++ +RD +R I+ + D + A+ Sbjct: 355 QIADVERITGRLALLSARPRDLSSLRDTFAALPALRERISAI--VANADALTRVDAALAP 412 Query: 424 LKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 P L+S ++ + RDGG + G DA LDE R + + + + L+ + Sbjct: 413 ----PAECLDLLTSAIAPEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLEARER 468 Query: 484 EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDL 543 T I NL++++N G++IEVT + D + RQT+ N R+ T EL Sbjct: 469 TRTGIANLRVEYNKVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTF 522 Query: 544 ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCR 603 E++ +A AL E ++ + A++ + +A +D+ A A A+ ++ Sbjct: 523 EDKALSAQERALARERALYDGVLQALLPFIPECQRVASALAELDVLAAFAERARTLDWVA 582 Query: 604 PIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 P + ++ GRHP+VE ++Q FIANDC KL L+TGPNMGGK Sbjct: 583 PTFTDEIGIEIEQGRHPVVEAQVEQ-----FIANDCRFGAER-----KLLLITGPNMGGK 632 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 STF+RQ ALI +MA +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+I Sbjct: 633 STFMRQTALIALMAYVGSYVPAKSACFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAI 692 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLK 783 LN AT QS V++DEIGRGT+T DGL++AWA +L N C L ATH+ ELT L Sbjct: 693 LNDATPQSLVLMDEIGRGTSTFDGLALAWAIARHLLAQNGCYTLFATHYFELTQLPAEFP 752 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK-- 841 + N L + GI+FLH V G A+ SYG+QV +LAG+P VI A L E+ Sbjct: 753 QAANVHLSAVEHGHGIVFLHAVNEGPANQSYGLQVAQLAGVPAPVIRAARKHLAYLEQQS 812 Query: 842 -LYHHNQKDMRLYYPEIQTKE----SKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYA 896 + Q D+ P E +S +EK++ ++ D++ P AL LY Sbjct: 813 ATQNTPQLDLFSAPPAAAADELECADAPAVSALPHPALEKLRDIDPDDLKPRDALDLLYE 872 Query: 897 VK 898 ++ Sbjct: 873 LR 874 >gi|209920172|ref|YP_002294256.1| DNA mismatch repair protein MutS [Escherichia coli SE11] gi|238058943|sp|B6I6B9|MUTS_ECOSE RecName: Full=DNA mismatch repair protein mutS gi|209913431|dbj|BAG78505.1| DNA mismatch repair protein MutS [Escherichia coli SE11] gi|324017000|gb|EGB86219.1| DNA mismatch repair protein MutS [Escherichia coli MS 117-3] Length = 853 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 314/900 (34%), Positives = 485/900 (53%), Gaps = 73/900 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYI 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFIDKPGIRITEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 740 EGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 799 Query: 843 YHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + Q D T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 800 SPNAAATQVD--------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|15803252|ref|NP_289284.1| DNA mismatch repair protein MutS [Escherichia coli O157:H7 EDL933] gi|12517186|gb|AAG57842.1|AE005501_11 methyl-directed mismatch repair [Escherichia coli O157:H7 str. EDL933] Length = 853 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 314/900 (34%), Positives = 485/900 (53%), Gaps = 73/900 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFIDKPGIRITEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQTALIALMAYIGSYVPAQKVXIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 740 EGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 799 Query: 843 YHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + Q D T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 800 SPNAAATQVD--------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|172061043|ref|YP_001808695.1| DNA mismatch repair protein MutS [Burkholderia ambifaria MC40-6] gi|238689171|sp|B1YSP3|MUTS_BURA4 RecName: Full=DNA mismatch repair protein mutS gi|171993560|gb|ACB64479.1| DNA mismatch repair protein MutS [Burkholderia ambifaria MC40-6] Length = 885 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 311/901 (34%), Positives = 464/901 (51%), Gaps = 56/901 (6%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E TPMM+QY+ IK+ +PD+LVFYRMGDFYELFF+DA A+R L +TLT+RG G Sbjct: 7 EAFAGHTPMMQQYLRIKADHPDTLVFYRMGDFYELFFEDAEKAARLLDLTLTQRGASAGT 66 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 I M GVP H Y+ KL+K+G +AICEQI P +K V R VVR+VTPGTL Sbjct: 67 PIKMAGVPHHAVEQYLAKLVKMGESVAICEQIGDPAT-----SKGPVERKVVRVVTPGTL 121 Query: 140 TEDQLLSPTDSNYLMAVAR------IRTEWAIAWIDISTGIFKISTSNHDRLISDIMRID 193 T+ LLS + YL+A+ + +AW+++++G +++ D+L + + RI Sbjct: 122 TDAALLSDKNDVYLLAMCTGHNKRGVAVNIGLAWLNLASGALRLAEIEPDQLGAALERIR 181 Query: 194 PREIIFSEKELSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFGSF 252 P EI+ ++ G A+ + P FD + R+ D ++ +D FG+ Sbjct: 182 PAEILTADGATDTVPA-------GAGAIKRVPAWHFDIASGTQRLCDQLDVAGLDGFGAH 234 Query: 253 SQVEKTAAAAAISYIKK-TQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 S AA A+ TQ + + E+ + +D A R NLE+ TL G+ Sbjct: 235 SLTSACGAAGALLLYAAATQGQQLRHVRSLKVENETEYIGLDPATRRNLELTETLRGTES 294 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPI--LINPIQKILK 369 +L +D T G RL + P S +R +I + P ++ ++ L+ Sbjct: 295 PTLYSLLDTCCTTMGSRLLRHWLHHPPRASVAAQSRQQAIGALLDAPADASLDALRSALR 354 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRD------GIRSGINILNLFLKNDLPEELRGAVEK 423 DV R RL + P+D++ +RD +R I+ + D + A+ Sbjct: 355 QIADVERITGRLALLSARPRDLSSLRDTFAALPALRERISAI--VANADALTRVDAALAP 412 Query: 424 LKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 P L+S ++ + RDGG + G DA LDE R + + + + L+ + Sbjct: 413 ----PAECLDLLTSAIAPEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLEARER 468 Query: 484 EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDL 543 T I NL++++N G++IEVT + D + RQT+ N R+ T EL Sbjct: 469 TRTGIANLRVEYNKVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTF 522 Query: 544 ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCR 603 E++ +A AL E ++ + A++ + +A +D+ A A A+ ++ Sbjct: 523 EDKALSAQERALARERALYDGVLQALLPFIPECQRVASALAELDVLAAFAERARTLDWVA 582 Query: 604 PIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 P + ++ GRHP+VE ++Q FIANDC KL L+TGPNMGGK Sbjct: 583 PTFTDEIGIEIEQGRHPVVEAQVEQ-----FIANDCRFGAER-----KLLLITGPNMGGK 632 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 STF+RQ ALI +MA +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+I Sbjct: 633 STFMRQTALIALMAYVGSYVPAKSACFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAI 692 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLK 783 LN AT QS V++DEIGRGT+T DGL++AWA +L N C L ATH+ ELT L Sbjct: 693 LNDATPQSLVLMDEIGRGTSTFDGLALAWAIARHLLAQNGCYTLFATHYFELTQLPAEFP 752 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY 843 + N L + GI+FLH V G A+ SYG+QV +LAG+P VI A L E+ Sbjct: 753 QAANVHLSAVEHGHGIVFLHAVNEGPANQSYGLQVAQLAGVPAPVIRAARKHLAYLEQQS 812 Query: 844 H-HNQKDMRLY-YPEIQTKE----SKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAV 897 N + L+ P E +S +EK++ ++ D++ P AL LY + Sbjct: 813 ATQNTPQLDLFSAPPAAADELECADAPAVSAIPHPALEKLRDIDPDDLKPRDALDLLYEL 872 Query: 898 K 898 + Sbjct: 873 R 873 >gi|320180836|gb|EFW55759.1| DNA mismatch repair protein MutS [Shigella boydii ATCC 9905] Length = 853 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 314/900 (34%), Positives = 485/900 (53%), Gaps = 73/900 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFIDKPGIRITEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQAALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 740 EGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 799 Query: 843 YHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + Q D T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 800 SPNAAATQVD--------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|168762865|ref|ZP_02787872.1| DNA mismatch repair protein MutS [Escherichia coli O157:H7 str. EC4501] gi|217327138|ref|ZP_03443221.1| DNA mismatch repair protein MutS [Escherichia coli O157:H7 str. TW14588] gi|189366846|gb|EDU85262.1| DNA mismatch repair protein MutS [Escherichia coli O157:H7 str. EC4501] gi|217319505|gb|EEC27930.1| DNA mismatch repair protein MutS [Escherichia coli O157:H7 str. TW14588] Length = 853 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 314/900 (34%), Positives = 485/900 (53%), Gaps = 73/900 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFIDKPGIRITEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 740 EGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 799 Query: 843 YHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + Q D T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 800 SPNADATQVD--------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|309795194|ref|ZP_07689613.1| DNA mismatch repair protein MutS [Escherichia coli MS 145-7] gi|308121165|gb|EFO58427.1| DNA mismatch repair protein MutS [Escherichia coli MS 145-7] Length = 853 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 314/900 (34%), Positives = 485/900 (53%), Gaps = 73/900 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFIDKPGIRITEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 740 EGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 799 Query: 843 YHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + Q D T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 800 SPNATATQVD--------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|225010431|ref|ZP_03700902.1| DNA mismatch repair protein MutS [Flavobacteria bacterium MS024-3C] gi|225005260|gb|EEG43211.1| DNA mismatch repair protein MutS [Flavobacteria bacterium MS024-3C] Length = 897 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 315/890 (35%), Positives = 489/890 (54%), Gaps = 43/890 (4%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E K +P+M+QY IK+ PD+L+ +R+GDFYE F +DA+ A+R LGI LT R G Sbjct: 30 ETPKKISPLMKQYNGIKTKYPDALLLFRVGDFYETFGEDAIKAARILGIVLTHRNNG-GD 88 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 + G P H+ N Y+ KL+K G R+AIC+Q+E P + K++V+R V L+TPG Sbjct: 89 KTELAGFPHHSLNTYLPKLVKAGQRVAICDQLEDP-----KQTKTIVKRGVTELITPGVA 143 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 D +LS +N+L A+ + + +A++DISTG F + + + + P E++ Sbjct: 144 FNDDILSAKSNNFLAALHKTNKGFGVAFLDISTGEFLCAQGTEEYIDKLLQNFSPSEVLV 203 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKT 258 S+ E ++ F + + VF +H ES + +N T+ FG + + Sbjct: 204 SKPE--RKNIQASFGGHWHYFFVEDWVFQEHYAKES-LNKQFNTKTLAGFGVENLPLGVI 260 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA A+ Y+ +T+ I R + +++D NLE+ ++ + SLL+ I Sbjct: 261 AAGVALHYLSETRHDKLSHISRLNRIAADAYVWMDRFTIKNLELFQS-NAPDGISLLEVI 319 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D + T GGRL +A PL D I R ++ +N L ++ LKS D+ R + Sbjct: 320 DKTTTPMGGRLLKRWLALPLKDQKAIEARHQIVSHLQENTALEQRFEQALKSIGDLERLI 379 Query: 379 SRLKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 S++ + P+++ +++ + + I L L ++ L+ QS+ Sbjct: 380 SKVATTKISPREMVQLKNTLLALGPIKSLAAASGQKALAHLAEGIDPLEPFTQSI----M 435 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + L+++ P G + G +LDE R L K+ + ++ + E T I +LKI N Sbjct: 436 ACLAEEAPVVIGKGTTIAPGYHNALDELRDLSSAGKKHLDAMLAREMERTGISSLKIASN 495 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 N GY+IEV ++ + +D +I +QT+ N R+ T EL E +I A L Sbjct: 496 NVFGYYIEVRNTHKDKVPED------WIRKQTLVNAERYITEELKTYETKILGAQEEILS 549 Query: 557 IELESFE-ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 IE FE ++S A NA QV A +D +ILA+EQNYC P +D + +K Sbjct: 550 IEQALFEELVSKAQAFIVPVQKNAHQV-ATLDCLCGFSILAREQNYCLPYLDQGCSLDLK 608 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 RHP++E+ L + ++AND L D+ S ++ ++TGPNM GKS LRQ AL+V+ Sbjct: 609 GARHPVIEQQLA--VDEKYVANDLFL----DRESQQIIMITGPNMSGKSALLRQTALVVL 662 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQMGS+VPAS A IGIVDK+F+RVG++DN++ G STFMVEM ETASILN + +S V+L Sbjct: 663 MAQMGSFVPASSAKIGIVDKIFTRVGASDNISQGASTFMVEMNETASILNNLSERSLVLL 722 Query: 736 DEIGRGTATLDGLSIAWATIEYLHE-TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 DEIGRGT+T DG+SIAWA EYLH+ +++ + L ATH+HEL ++S S +R N + V + Sbjct: 723 DEIGRGTSTYDGISIAWAITEYLHQHSSKAKTLFATHYHELNEMSASFERIKNFNVAVKE 782 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 + ++F+ + PG + HS+GI V K+AG+PN V+ +A ILK EK + Q +L Sbjct: 783 LKDTVLFIRTLSPGGSAHSFGIHVAKMAGMPNEVLQKANSILKKLEKSHSSEQLTGKL-- 840 Query: 855 PEIQTKESKNNLS--KNDKLFVEKIK----CLNLDEMSPLTALKTLYAVK 898 Q S LS K D +E+IK L+++ ++P+ AL L +K Sbjct: 841 ---QEIPSDMQLSIFKLDDPILEQIKEEILDLDINSLTPVAALLKLEEIK 887 >gi|288574977|ref|ZP_06393334.1| DNA mismatch repair protein MutS [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570718|gb|EFC92275.1| DNA mismatch repair protein MutS [Dethiosulfovibrio peptidovorans DSM 11002] Length = 859 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 307/878 (34%), Positives = 482/878 (54%), Gaps = 52/878 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM+ Q++ K+ P++L+F+RMGDFYELFFDDA +AS L I LT R + GK IPM G Sbjct: 14 TPMLEQFVRWKNEYPEALLFFRMGDFYELFFDDAKVASEVLDIALTARDQ--GKKIPMAG 71 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H + Y+ KLIK G+ +AICEQ+ P +SLV R V+RLVTPGT ++ Sbjct: 72 IPHHASESYLGKLIKKGYHVAICEQMTEP------NGRSLVDRQVIRLVTPGTYLPEE-- 123 Query: 146 SPTDSNYLMAVARI-RTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 + L+AV ++ R WA+ ++ TG + D + + + EI+ + ++ Sbjct: 124 -AGNDGRLVAVRKLDRYRWAVGSLEPGTGFLEAGAMPLDEVRAFLSAYSGSEILRPKGKI 182 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAA 263 E SL E+ + V P FD + + + + ++ FG E AAA Sbjct: 183 PE-EIASLIES--SPVVELPVEDFDPAGGARWLQHRWGLASLQGFGFQDGAPEIGVAAAL 239 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 + Y+++TQ + L +D + NLE+ SL ++ T Sbjct: 240 LRYLEETQFGAARHVSGIAPVLSSRYLHLDVTTQRNLELF----DGDGPSLYDILNRCKT 295 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G R E I PL D +I+ RLD + +N +QK L D+ RSL+RL + Sbjct: 296 ACGRRRLREWITRPLMDPGEISRRLDVQETLLNFSDELNDLQKGLVHCKDIERSLARLHM 355 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK----LPQSLEKTLSSML 439 G P+D+A IRD + S + + + LK L + + L + +E + S +L Sbjct: 356 RSGNPRDLAAIRDTL-SALPSIEIALKGAGLSHLLPCSDDFRDVSDLLARGIEDSPSRVL 414 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + G +RDG D LDE R ++ + + + + I LK ++ Sbjct: 415 GN--------GKIVRDGFDDKLDEWRGFAERGQEWLNDFTQRERDRLSIPRLKTGYSRVF 466 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY++E+ S ++ DLE + + RQT+ + R+TT EL D E R++ + E Sbjct: 467 GYYLEIGKGS---MRDDLELPEDYRRRQTLVSAERYTTSELRDFEERMSRSEEEVRKRET 523 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E + +L +E++E L + + + +D+ ++LA +++E+ Y RP ++ + ++ GRH Sbjct: 524 ELYGMLLEKTLEKTEKLQSLGRALGNLDVLVSLAEVSRERGYIRPDFNDGGDISIRGGRH 583 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE Q PF+ ND D+ + +L ++TGPNM GKST+LR AL+VIMAQM Sbjct: 584 PVVEAV---QKEIPFVPNDVDMKM----DGNRLAIVTGPNMAGKSTYLRMTALLVIMAQM 636 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 G+Y+PA A +G+ D++F+R+G+ D LA G STFMVEM+ETA+IL+ T++S VILDE+G Sbjct: 637 GTYIPAESAELGLCDRVFTRLGARDELAFGNSTFMVEMVETANILHNVTDRSLVILDEVG 696 Query: 740 RGTATLDGLSIAWATIEYLH-ETNRC-RGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 RGT+T DG+SIAWA +EYL RC + L ATH+HELT L + + N ++V + + Sbjct: 697 RGTSTYDGMSIAWAVLEYLQGACGRCPKVLFATHYHELTALERRMPHVFNLRVEVEERPD 756 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 G+ FLH+VIPG AD SYG++V +LAGLP V+ RA ++L+ FEK + D PE Sbjct: 757 GVTFLHRVIPGQADRSYGVEVARLAGLPRVVLCRAQELLERFEK-----RSDDGASVPEP 811 Query: 858 QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 + +L K D + ++++ L+ DE++P+ AL+ +Y Sbjct: 812 SVQMEFFDL-KGDAI-IQELASLSPDELTPIQALEKVY 847 >gi|74313299|ref|YP_311718.1| DNA mismatch repair protein MutS [Shigella sonnei Ss046] gi|193064985|ref|ZP_03046060.1| DNA mismatch repair protein MutS [Escherichia coli E22] gi|194427839|ref|ZP_03060385.1| DNA mismatch repair protein MutS [Escherichia coli B171] gi|218696327|ref|YP_002403994.1| DNA mismatch repair protein MutS [Escherichia coli 55989] gi|260845376|ref|YP_003223154.1| methyl-directed mismatch repair protein MutS [Escherichia coli O103:H2 str. 12009] gi|260856840|ref|YP_003230731.1| methyl-directed mismatch repair protein MutS [Escherichia coli O26:H11 str. 11368] gi|260869408|ref|YP_003235810.1| methyl-directed mismatch repair protein MutS [Escherichia coli O111:H- str. 11128] gi|300919230|ref|ZP_07135753.1| DNA mismatch repair protein MutS [Escherichia coli MS 115-1] gi|301306148|ref|ZP_07212224.1| DNA mismatch repair protein MutS [Escherichia coli MS 124-1] gi|110826509|sp|Q3YYC9|MUTS_SHISS RecName: Full=DNA mismatch repair protein mutS gi|254766627|sp|B7LEE7|MUTS_ECO55 RecName: Full=DNA mismatch repair protein mutS gi|73856776|gb|AAZ89483.1| methyl-directed mismatch repair [Shigella sonnei Ss046] gi|192927282|gb|EDV81901.1| DNA mismatch repair protein MutS [Escherichia coli E22] gi|194414072|gb|EDX30348.1| DNA mismatch repair protein MutS [Escherichia coli B171] gi|218353059|emb|CAU98884.1| methyl-directed mismatch repair protein [Escherichia coli 55989] gi|257755489|dbj|BAI26991.1| methyl-directed mismatch repair protein MutS [Escherichia coli O26:H11 str. 11368] gi|257760523|dbj|BAI32020.1| methyl-directed mismatch repair protein MutS [Escherichia coli O103:H2 str. 12009] gi|257765764|dbj|BAI37259.1| methyl-directed mismatch repair protein MutS [Escherichia coli O111:H- str. 11128] gi|300413675|gb|EFJ96985.1| DNA mismatch repair protein MutS [Escherichia coli MS 115-1] gi|300838580|gb|EFK66340.1| DNA mismatch repair protein MutS [Escherichia coli MS 124-1] gi|315254517|gb|EFU34485.1| DNA mismatch repair protein MutS [Escherichia coli MS 85-1] gi|323154950|gb|EFZ41142.1| DNA mismatch repair protein MutS [Escherichia coli EPECa14] gi|323172978|gb|EFZ58609.1| DNA mismatch repair protein MutS [Escherichia coli LT-68] gi|323180155|gb|EFZ65707.1| DNA mismatch repair protein MutS [Escherichia coli 1180] gi|323183261|gb|EFZ68658.1| DNA mismatch repair protein MutS [Escherichia coli 1357] Length = 853 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 314/900 (34%), Positives = 484/900 (53%), Gaps = 73/900 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+ +K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLRLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFIDKPGIRITEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 740 EGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 799 Query: 843 YHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + Q D T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 800 SPNAAATQVD--------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|254037774|ref|ZP_04871832.1| mismatch repair protein [Escherichia sp. 1_1_43] gi|226839398|gb|EEH71419.1| mismatch repair protein [Escherichia sp. 1_1_43] Length = 853 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 314/900 (34%), Positives = 485/900 (53%), Gaps = 73/900 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFIDKPGIRITEGRHPVVEQVLNE----PFIANPLNLS-----PQLRMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 740 EGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 799 Query: 843 YHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + Q D T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 800 SPNAAATQVD--------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|24114026|ref|NP_708536.1| DNA mismatch repair protein MutS [Shigella flexneri 2a str. 301] gi|30064089|ref|NP_838260.1| DNA mismatch repair protein MutS [Shigella flexneri 2a str. 2457T] gi|110806640|ref|YP_690160.1| DNA mismatch repair protein MutS [Shigella flexneri 5 str. 8401] gi|44888198|sp|Q83QE9|MUTS_SHIFL RecName: Full=DNA mismatch repair protein mutS gi|123047978|sp|Q0T1G0|MUTS_SHIF8 RecName: Full=DNA mismatch repair protein mutS gi|24053146|gb|AAN44243.1| methyl-directed mismatch repair protein [Shigella flexneri 2a str. 301] gi|30042345|gb|AAP18070.1| methyl-directed mismatch repair protein [Shigella flexneri 2a str. 2457T] gi|110616188|gb|ABF04855.1| methyl-directed mismatch repair [Shigella flexneri 5 str. 8401] gi|281602100|gb|ADA75084.1| DNA mismatch repair protein mutS [Shigella flexneri 2002017] gi|332753583|gb|EGJ83962.1| DNA mismatch repair protein MutS [Shigella flexneri K-671] gi|332755627|gb|EGJ85990.1| DNA mismatch repair protein MutS [Shigella flexneri 2747-71] gi|333000613|gb|EGK20190.1| DNA mismatch repair protein MutS [Shigella flexneri K-218] gi|333015831|gb|EGK35167.1| DNA mismatch repair protein MutS [Shigella flexneri K-304] Length = 853 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 314/900 (34%), Positives = 485/900 (53%), Gaps = 73/900 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRSNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFIDKPGIRITEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 740 EGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 799 Query: 843 YHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + Q D T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 800 SPNAAATQVD--------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|16130640|ref|NP_417213.1| methyl-directed mismatch repair protein [Escherichia coli str. K-12 substr. MG1655] gi|89109520|ref|AP_003300.1| methyl-directed mismatch repair protein [Escherichia coli str. K-12 substr. W3110] gi|157162181|ref|YP_001459499.1| DNA mismatch repair protein MutS [Escherichia coli HS] gi|170019021|ref|YP_001723975.1| DNA mismatch repair protein MutS [Escherichia coli ATCC 8739] gi|170082309|ref|YP_001731629.1| methyl-directed mismatch repair protein [Escherichia coli str. K-12 substr. DH10B] gi|194438950|ref|ZP_03071034.1| DNA mismatch repair protein MutS [Escherichia coli 101-1] gi|238901870|ref|YP_002927666.1| methyl-directed mismatch repair protein [Escherichia coli BW2952] gi|253772411|ref|YP_003035242.1| DNA mismatch repair protein MutS [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162664|ref|YP_003045772.1| DNA mismatch repair protein MutS [Escherichia coli B str. REL606] gi|256024759|ref|ZP_05438624.1| DNA mismatch repair protein MutS [Escherichia sp. 4_1_40B] gi|300930592|ref|ZP_07145984.1| DNA mismatch repair protein MutS [Escherichia coli MS 187-1] gi|300954976|ref|ZP_07167387.1| DNA mismatch repair protein MutS [Escherichia coli MS 175-1] gi|301027344|ref|ZP_07190685.1| DNA mismatch repair protein MutS [Escherichia coli MS 196-1] gi|307139421|ref|ZP_07498777.1| DNA mismatch repair protein MutS [Escherichia coli H736] gi|331643419|ref|ZP_08344550.1| DNA mismatch repair protein MutS [Escherichia coli H736] gi|127556|sp|P23909|MUTS_ECOLI RecName: Full=DNA mismatch repair protein mutS gi|167012382|sp|A8A3L2|MUTS_ECOHS RecName: Full=DNA mismatch repair protein mutS gi|189030717|sp|B1IUU6|MUTS_ECOLC RecName: Full=DNA mismatch repair protein mutS gi|229486460|sp|B1XCR0|MUTS_ECODH RecName: Full=DNA mismatch repair protein mutS gi|259511165|sp|C4ZZN7|MUTS_ECOBW RecName: Full=DNA mismatch repair protein mutS gi|146906|gb|AAA24188.1| DNA mismatch repair protein [Escherichia coli] gi|882626|gb|AAA69243.1| DNA mismatch repair protein [Escherichia coli str. K-12 substr. MG1655] gi|1789089|gb|AAC75775.1| methyl-directed mismatch repair protein [Escherichia coli str. K-12 substr. MG1655] gi|85675554|dbj|BAE76810.1| methyl-directed mismatch repair protein [Escherichia coli str. K12 substr. W3110] gi|157067861|gb|ABV07116.1| DNA mismatch repair protein MutS [Escherichia coli HS] gi|169753949|gb|ACA76648.1| DNA mismatch repair protein MutS [Escherichia coli ATCC 8739] gi|169890144|gb|ACB03851.1| methyl-directed mismatch repair protein [Escherichia coli str. K-12 substr. DH10B] gi|194422071|gb|EDX38074.1| DNA mismatch repair protein MutS [Escherichia coli 101-1] gi|238861765|gb|ACR63763.1| methyl-directed mismatch repair protein [Escherichia coli BW2952] gi|242378289|emb|CAQ33065.1| mutS, subunit of MutHLS complex, methyl-directed mismatch repair [Escherichia coli BL21(DE3)] gi|253323455|gb|ACT28057.1| DNA mismatch repair protein MutS [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974565|gb|ACT40236.1| DNA mismatch repair protein [Escherichia coli B str. REL606] gi|253978732|gb|ACT44402.1| DNA mismatch repair protein [Escherichia coli BL21(DE3)] gi|260448216|gb|ACX38638.1| DNA mismatch repair protein MutS [Escherichia coli DH1] gi|299879337|gb|EFI87548.1| DNA mismatch repair protein MutS [Escherichia coli MS 196-1] gi|300318068|gb|EFJ67852.1| DNA mismatch repair protein MutS [Escherichia coli MS 175-1] gi|300461534|gb|EFK25027.1| DNA mismatch repair protein MutS [Escherichia coli MS 187-1] gi|315137340|dbj|BAJ44499.1| DNA mismatch repair protein MutS [Escherichia coli DH1] gi|315615122|gb|EFU95759.1| DNA mismatch repair protein MutS [Escherichia coli 3431] gi|323941436|gb|EGB37619.1| DNA mismatch repair protein MutS [Escherichia coli E482] gi|323960607|gb|EGB56233.1| DNA mismatch repair protein MutS [Escherichia coli H489] gi|323971538|gb|EGB66771.1| DNA mismatch repair protein MutS [Escherichia coli TA007] gi|331036890|gb|EGI09114.1| DNA mismatch repair protein MutS [Escherichia coli H736] Length = 853 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 314/900 (34%), Positives = 484/900 (53%), Gaps = 73/900 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+ +K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLRLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAGLQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFIDKPGIRITEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 740 EGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 799 Query: 843 YHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + Q D T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 800 SPNAAATQVD--------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|312965008|ref|ZP_07779248.1| DNA mismatch repair protein MutS [Escherichia coli 2362-75] gi|312290564|gb|EFR18444.1| DNA mismatch repair protein MutS [Escherichia coli 2362-75] Length = 853 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 311/889 (34%), Positives = 489/889 (55%), Gaps = 51/889 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+F+RMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFFRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R L+RL + P+D+A +R + + L L+N ++ EK+ + + L Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ-LPELRAQLENVDSAPVQALREKMGEFAE-LRD 405 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + D P RDGG + G + LDE R+L D + + L+++ E T + LK+ Sbjct: 406 LLERAIIDTPPVLVRDGGVIATGYNEELDEWRALADGATDYLERLEVRERERTGLDTLKV 465 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + Sbjct: 466 GFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKEYEDKVLTSKGK 519 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY P + Sbjct: 520 ALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFIDKPGIR 579 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 580 ITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTALI 630 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V Sbjct: 631 ALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLV 690 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L Sbjct: 691 LMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH---NQKDM 850 + + I F+H V G A SYG+ V LAG+P VI RA L+ E + + Q D Sbjct: 751 EHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESISPNAAATQVD- 809 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 810 -------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|239636983|ref|ZP_04677977.1| DNA mismatch repair protein MutS [Staphylococcus warneri L37603] gi|239597333|gb|EEQ79836.1| DNA mismatch repair protein MutS [Staphylococcus warneri L37603] Length = 871 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 305/830 (36%), Positives = 461/830 (55%), Gaps = 54/830 (6%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPMM+QY++IKS D L+F+R+GDFYE+FFDDA ASR L ITLTKR I Sbjct: 1 MSNVTPMMQQYLKIKSEYDDCLLFFRLGDFYEMFFDDAKEASRVLEITLTKRDAKKDNPI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A+ YI+ LI G+++AICEQ+E P + K +V+R VVR+VTPGT+ + Sbjct: 61 PMCGVPYHSADSYIETLINNGYKVAICEQMEDP-----KQTKGMVKREVVRIVTPGTVMD 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFS 200 + +NY+++ + E+A+++ DISTG FK + + L+++I I+P EI+ Sbjct: 116 QGGVDEKQNNYILSFIQSPHEYALSYCDISTGEFKTTHFEDEATLLNEITTINPNEIV-- 173 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIAD-YYNITTVDTFGSFSQVEKTA 259 + E L Q N+ + I++ Y+ + ++ Q + + Sbjct: 174 -----------ICEPLSENMQRQINMITETITVRDEISNQYFEVNNIE-----HQHMQQS 217 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSA-----ARSNLEILRTLS-GSREQS 313 + YI+ TQ + + ED+Q ID A+ NLE+ ++ S++ + Sbjct: 218 TQLLLDYIQHTQKRDLSHL-----EDVQQYAAIDFMKMDFYAKRNLELTESIRLKSKKGT 272 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T G R + I PL +I RL+ ++ FI + I + ++ L D Sbjct: 273 LLWLMDETKTPMGARRLKQWIDRPLIYKQQIEERLNIVDEFINHFIERDTLRNYLNQVYD 332 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSL 431 + R + R+ G +D+ ++ I NI L L +D + A+E L L + L Sbjct: 333 IERLVGRVSYGNVNARDLIQLKHSISEIPNIKQLLSQLDSDTITQF-DALEPLDDLLEVL 391 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 E +L ++ P +DGG + G + LDE K +A LQ K E T IK+L Sbjct: 392 ENSLV----EEPPISVKDGGLFKSGFNHQLDEYLEASRNGKSWLAELQAKERERTGIKSL 447 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 KI N GYFIE+T ++ S+ + +QT+SN RF T EL + E+ I A Sbjct: 448 KISFNKVFGYFIEITRANLQGFDP---SQFGYNRKQTLSNAERFITDELKEKEDIILGAE 504 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + A+ +E + F L I E +E L +++I+ +D + A +A++ NY RP + Sbjct: 505 DKAIELEYQLFVKLREHIKEYTERLQKQAKIISELDCLQSFAEIAQKYNYVRPHFSDDKT 564 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 +K+ RHP+VE+ + ++ NDC L N ++L+TGPNM GKST++RQ A Sbjct: 565 LKLKNSRHPVVERVM---DYNDYVPNDCALD-----NDTFIYLITGPNMSGKSTYMRQIA 616 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 +I IMAQMG+YVP A + I D++F+R+G+AD+L SG+STFMVEM+E L AT S Sbjct: 617 IISIMAQMGAYVPCESATLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTYATEDS 676 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 +I DEIGRGT+T DGL++A A IEY+ +T+ + L +TH+HELT L + L N + Sbjct: 677 LIIFDEIGRGTSTYDGLALAQAMIEYVAQTSHAKTLFSTHYHELTTLDQLLPCLKNVHVA 736 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 ++ +IFLHKV G D SYGIQV KLA LP+ VI RA IL FE+ Sbjct: 737 ANEYKGELIFLHKVKDGAVDDSYGIQVAKLADLPDEVIQRAQVILNDFEQ 786 >gi|333015417|gb|EGK34756.1| DNA mismatch repair protein MutS [Shigella flexneri K-227] Length = 853 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 314/900 (34%), Positives = 485/900 (53%), Gaps = 73/900 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFIDKPGIRITEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 740 EGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAVLAGVPKEVIKRARQKLRELESI 799 Query: 843 YHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + Q D T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 800 SPNAAATQVD--------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|82545194|ref|YP_409141.1| DNA mismatch repair protein MutS [Shigella boydii Sb227] gi|187734248|ref|YP_001881523.1| DNA mismatch repair protein MutS [Shigella boydii CDC 3083-94] gi|90109856|sp|Q31X95|MUTS_SHIBS RecName: Full=DNA mismatch repair protein mutS gi|238691751|sp|B2TZJ7|MUTS_SHIB3 RecName: Full=DNA mismatch repair protein mutS gi|81246605|gb|ABB67313.1| methyl-directed mismatch repair [Shigella boydii Sb227] gi|187431240|gb|ACD10514.1| DNA mismatch repair protein MutS [Shigella boydii CDC 3083-94] gi|320186517|gb|EFW61245.1| DNA mismatch repair protein MutS [Shigella flexneri CDC 796-83] Length = 853 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 314/900 (34%), Positives = 484/900 (53%), Gaps = 73/900 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+ +K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLRLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAGLQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFIDKPGIRITEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 740 EDVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 799 Query: 843 YHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + Q D T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 800 SPNAAATQVD--------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|312880063|ref|ZP_07739863.1| DNA mismatch repair protein MutS [Aminomonas paucivorans DSM 12260] gi|310783354|gb|EFQ23752.1| DNA mismatch repair protein MutS [Aminomonas paucivorans DSM 12260] Length = 859 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 308/884 (34%), Positives = 463/884 (52%), Gaps = 58/884 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM+ QY+ K P L+F+RMGDF+ELFFDDA+ AS L +TLT R K IPM G Sbjct: 11 TPMLEQYLHWKRQYPGYLLFFRMGDFFELFFDDAVAASELLDLTLTARDAE--KAIPMAG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H + Y+ +L++ G R+A+C+Q+ P K+LV R VVRLVTPGT + Sbjct: 69 VPHHAVDGYLARLVEAGRRVALCDQVTEP------DGKTLVERRVVRLVTPGTFVPPE-- 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 L A + WA+A + +STG F+ S ++ P+E + Sbjct: 121 -SGQEGLLAACIPGKPCWALALLSMSTGRFEAGNLPEQEARSYLLSFSPQETLVPRG--- 176 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAI 264 E SL L V + F + +E+ + + + +++ FG AA A + Sbjct: 177 -LEGFSLEGPL----VERERDLFSVTAAEALLKHRHGVLSLEGFGFEPRDAALGAAGAVL 231 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 Y+++TQ + R +S L +D +++ NLE++ GS L ++ T Sbjct: 232 RYVEETQFGRTGHLQTLRRIQPRSGLLLDPSSQCNLELVEGRGGS----LYGILNRCKTP 287 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 G RL E I PL D I R +++ + P L ++++L+ PDV R+LSRL + Sbjct: 288 LGRRLLREWILHPLNDPEAIELRQEAVQALVDTPSLRESLRRVLEGLPDVERALSRLHLN 347 Query: 385 RGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLP 444 G P+D+ RD + S + L F + + L ++LS L + LP Sbjct: 348 TGGPRDLGACRDFL-SRLPRLESFRDRPPLLPWLPEPCPGR---EELGESLSRALEETLP 403 Query: 445 TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIE 504 R+GG +R G D LD R +K + S + T I+NLK+ N G++IE Sbjct: 404 RNLREGGVIRPGHDGELDSLRQCLGDAKGWLRSYEEGERARTGIRNLKVGFNRVFGHYIE 463 Query: 505 VTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEI 564 V ++A + + + RQT+ N R+ T EL E+R A + E + Sbjct: 464 VGKAAADRVPGE------YQRRQTLVNCERYVTEELRTFEDRRCGAEGALAEREERLWND 517 Query: 565 LSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEK 624 L + ++ L A++ +A +D+ A +A + YCRP++D ++ GRHP+VE Sbjct: 518 LLTRTLSRTADLQAAARKVAELDVLHGFAEVAAARGYCRPLVDEGETLSIRGGRHPVVEA 577 Query: 625 TLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684 L + +PF ND +L D + ++ LLTGPNM GKSTFLR AL+V+MAQMGS+VP Sbjct: 578 AL---TPEPFTPNDLEL----DGDQRRMILLTGPNMAGKSTFLRMGALLVLMAQMGSFVP 630 Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744 A A IG +D+LF+R+G+ D+L G+STFMVEM+ETA ILN +S VILDEIGRGT+T Sbjct: 631 AEEARIGRIDRLFTRIGARDDLNRGKSTFMVEMMETAQILNGLGPRSLVILDEIGRGTST 690 Query: 745 LDGLSIAWATIEYLHETNRCRG--LLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFL 802 DG+SIAWA +E+L E R L ATH+HELT L++ L N ++ V ++ G+ FL Sbjct: 691 DDGMSIAWAVMEFLQEETELRPKVLFATHYHELTALAEKLPGVRNCSVAVEETPRGLAFL 750 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKES 862 H V+P A SYG+ V +LAGLP +V+ R+ ++L FE + + Q + Sbjct: 751 HHVVPRPASRSYGVDVARLAGLPESVLLRSRELLSRFEARRREGTELL------PQEERP 804 Query: 863 KNNLSKNDKLF--------VEKIKCLNLDEMSPLTALKTLYAVK 898 ++ + +LF E C + D M+PL L+TLY ++ Sbjct: 805 RSGETGQRRLFDVDLEALLEELSLC-DPDRMTPLQGLETLYRLR 847 >gi|293415983|ref|ZP_06658623.1| DNA mismatch repair protein MutS [Escherichia coli B185] gi|291432172|gb|EFF05154.1| DNA mismatch repair protein MutS [Escherichia coli B185] Length = 853 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 314/900 (34%), Positives = 485/900 (53%), Gaps = 73/900 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADLETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAGLQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFIDKPGIRITEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 740 EGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 799 Query: 843 YHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + Q D T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 800 SPNAAATQVD--------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|302380515|ref|ZP_07268980.1| DNA mismatch repair protein MutS [Finegoldia magna ACS-171-V-Col3] gi|302311458|gb|EFK93474.1| DNA mismatch repair protein MutS [Finegoldia magna ACS-171-V-Col3] Length = 856 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 313/878 (35%), Positives = 491/878 (55%), Gaps = 46/878 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY EIK N D ++F+R+GDFYE+FFDDAL+AS+ L I LT+R K PMCG Sbjct: 4 TPMIKQYKEIKEQNKDCILFFRLGDFYEMFFDDALIASKELEIVLTQRDCGENKKCPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H + YI KL+ G+++AICEQ+E P + K LV+R ++++ TP T+ E++ Sbjct: 64 IPYHVSEVYINKLVSKGYKVAICEQLEDP-----KLVKGLVKRGIIKIYTPATVIENENS 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI----SDIMRIDPREIIFSE 201 + NYLM++++ E AI++IDISTG + + D + ++I +I P+EIIF++ Sbjct: 119 DTGNFNYLMSISKKSNEVAISYIDISTGDVSYTNTTSDDIYKIIENEISKITPKEIIFND 178 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 E S +++ V N S+I Y+ T S+ A Sbjct: 179 HEFSTNSLETIASKFSIVLTTVNNGTDSIDFINSKIT--YDNTN-------SETTNICVA 229 Query: 262 AAISYIKKTQ--MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTI 318 + Y+ + Q +V+ I + I + IDS + NLEI + L + S+ SL + Sbjct: 230 NLLKYVFRYQDDLVH---INSSRKYYINEFMEIDSNSVINLEIQKNLYTNSKNGSLFGVL 286 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 +++ T G RL + PL D +I R + + ++ L+ ++ L D+ R + Sbjct: 287 NHTKTSMGSRLLHSYLERPLMDKAEILIRQNRVEEIFEDYELLVNLENCLDGIYDLDRLI 346 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 ++L KD+ ++ I + NL N +L G EKL L + + + Sbjct: 347 AKLSYKSANAKDLIALKVSIEKIPYLKNLLNCNKKNIQLIG--EKLDDL-RDIYDLIDKS 403 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + DD P +G ++ LD+ R R K + ++ + IKNLKI N Sbjct: 404 IVDDPPVILTEGNLIKPNFSNELDQLRYNRVNGKNELVEYEMSEKDRLGIKNLKIVFNKK 463 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 LGYFI+VT S+ + + +D E RQT++N +RF T +L +E++I ++ + +E Sbjct: 464 LGYFIDVTKSNLNKVGEDYE------KRQTLTNSSRFKTKQLEAIESKILDSEDEIFELE 517 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + FE + I+E + ++ +IAIID+S +LA A NY +P I+ V + R Sbjct: 518 YKIFEDIRKIILENLSRIKKSADLIAIIDVSNSLAKCAYLNNYIKPDINTYGLIDVLESR 577 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGK--LWLLTGPNMGGKSTFLRQNALIVIM 676 HPIVE ++ Q FI ND + SGK + L+TGPNM GKST+LRQ ALI I+ Sbjct: 578 HPIVELSVGQSE---FITNDILIG------SGKNDIQLITGPNMSGKSTYLRQVALICIL 628 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 Q+GS+VPA+ A+I IVDK+F+R+GS+DNL G STFMVEM E ++I+ AT+ S ++LD Sbjct: 629 NQIGSFVPATKANISIVDKIFTRIGSSDNLFKGESTFMVEMKEMSNIIKYATSNSLLVLD 688 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DGLS+A A +EY+ + + + L ATH+HELT+L K L N + + ++N Sbjct: 689 EIGRGTSTFDGLSLARAIVEYISKNIKAKTLFATHYHELTELEKKLDNLINMKVDIKETN 748 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 + IIFL K+ G D SYGI+V +LAG+P T+I RA ILK +K + D+ + Sbjct: 749 DSIIFLRKITRGSTDKSYGIEVAELAGMPKTLIKRAKSILKEIDK--EDTKIDLPIADFA 806 Query: 857 IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 +Q + + K F ++IK +N++E++P+ +L+ L Sbjct: 807 VQNEMEDDKNIHELKDFKDEIKNINVNEITPIQSLQLL 844 >gi|194289312|ref|YP_002005219.1| DNA mismatch repair protein muts [Cupriavidus taiwanensis LMG 19424] gi|193223147|emb|CAQ69152.1| methyl-directed mismatch repair protein [Cupriavidus taiwanensis LMG 19424] Length = 876 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 318/906 (35%), Positives = 471/906 (51%), Gaps = 57/906 (6%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY+ IK+ +PD+L+FYRMGDFYELF DDA A+R L ITLT RG G I M G+P Sbjct: 1 MMAQYLRIKADHPDTLLFYRMGDFYELFHDDAEKAARLLDITLTARGASNGVPIRMAGIP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H+ + Y+ +L+K+G +AICEQI P +K V R VVR+VTPGTLT+ LL Sbjct: 61 FHSVDQYLARLVKLGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTLTDAALLPD 115 Query: 148 TDSNYLMAVARIRTEWAI-----AWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK 202 +LMAV + T + AW+++++G ++ L ++ RI P E+++++ Sbjct: 116 KADTFLMAVHQQTTRRGVSKTGLAWLNLASGELRLMECEAALLGRELERIRPAELLYADG 175 Query: 203 -ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 EL L P FD R+ + + ++D FG AA Sbjct: 176 IELP---------ALACARTRLPEWHFDQDAGTRRLREQLGVASLDPFGCAGLGAALGAA 226 Query: 262 AAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 A+ +Y TQ + + + E + +DSA R NLE+ TL G +L +D Sbjct: 227 GALLNYAATTQGQSLRHVQGVKVERESEYVGLDSATRRNLELTETLRGGESPTLFSLLDT 286 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 T G R + PL D R +I I + ++ L+ DV R SR Sbjct: 287 CCTAMGSRALRHWLHHPLRDPAVPQARQQAIGVLIDQGS--DALRAALRRLADVERITSR 344 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 L + P+D++ +RD +R+ + + L++D L + +PQ+ + L ++ Sbjct: 345 LALLNARPRDLSSLRDTLRA-LPEVQACLRDDQGSLLLAQTVQDLAVPQACLELLVRAVA 403 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 ++ T RDGG + G DA LDE R + + + + L+ + T I NL+++ N G Sbjct: 404 EEPATVVRDGGVIARGFDAELDELRDISENCGQFLIDLEARERARTGIANLRVEFNRVHG 463 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 ++IEVT+ A + D + RQT+ N R+ T EL E++ +A + AL E + Sbjct: 464 FYIEVTNGQADKVPDD------YRRRQTLKNAERYITPELKAFEDKALSAQDRALAREKQ 517 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP--IIDNSTNFIVKDGR 618 +E L A++ L + +A +D+ ALA A+ ++ P + +N + + GR Sbjct: 518 LYEGLLQALLPHIGELQRVAAALARLDVLAALAERAQTLDWSAPERVAENVVDIV--QGR 575 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE L +S FIANDC L+ + KL L+TGPNMGGKSTF+RQ ALIV++A Sbjct: 576 HPVVEGQLAAESVA-FIANDCQLN-----EARKLLLITGPNMGGKSTFMRQTALIVLLAC 629 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +G+YVPA A IG +D++F+R+G+AD+LA GRSTFMVEM E A IL+ AT S V++DEI Sbjct: 630 VGAYVPARRAVIGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAGILHHATPASLVLMDEI 689 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGL++AWA +L NR L ATH+ ELT L + + N L + +G Sbjct: 690 GRGTSTFDGLALAWAIARHLLSHNRSHTLFATHYFELTQLPQEFPQAANVHLSAVEHGDG 749 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN----QKDMRLYY 854 I+FLH V G A SYG+QV +LAG+P VI A L E+ Q D+ Sbjct: 750 IVFLHAVQDGPASQSYGLQVAQLAGVPQPVIRAARKHLAWLEQQSADATPTPQLDLFAAP 809 Query: 855 P----------EIQTKESKNN---LSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWT 901 P S N L+ ++ + L+ D ++P AL LY +KA Sbjct: 810 PTPDDDEAWDDGDAGTASANGAAVLAPEQAAVIDALADLDPDTLTPRAALDALYRLKALA 869 Query: 902 LEKYST 907 E T Sbjct: 870 GEAVDT 875 >gi|89889528|ref|ZP_01201039.1| DNA mismatch repair ATPase MutS [Flavobacteria bacterium BBFL7] gi|89517801|gb|EAS20457.1| DNA mismatch repair ATPase MutS [Flavobacteria bacterium BBFL7] Length = 867 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 300/911 (32%), Positives = 499/911 (54%), Gaps = 80/911 (8%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 + + +K TP+M+QY IK+ PD+L+ +R+GDFYE F +DA+ +R L I LT R Sbjct: 1 MSKKVKKVTPLMQQYNRIKTKYPDALLLFRVGDFYETFGEDAIKTARILNIVLTSRNNG- 59 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G+ I + G P H+ N Y+ KL+K G R+AIC+Q+E P + K++V+R V L+TPG Sbjct: 60 GEPIELAGFPHHSMNTYLPKLVKAGERVAICDQLEDP-----KQTKTIVKRGVTELITPG 114 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREI 197 D++L +N+L A++ + + +A++DISTG F +S + + + + +P E+ Sbjct: 115 VALNDEVLQSKSNNFLAALSIDKNVYGVAFLDISTGEFLVSQGSREEIDKLLQNFNPSEV 174 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVF-----FDHSISESRIADYYNITTVDTFGSF 252 + + K+ + + ++ P F F + + ++ I ++ FG Sbjct: 175 LINRKDKTRIKEDFPYDL--------PYFFLEDWVFQIDFARESLLKHFKINSLKGFG-I 225 Query: 253 SQVEK--TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR 310 ++E+ TAA A + Y+ +TQ I R + +++D NLE+ + LS S Sbjct: 226 EKLEESITAAGAILHYLDETQHDKVDHIAGISRIADEDFVWMDRFTVRNLELYQALS-SG 284 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 +L+ ID + T GGR+ +A PL + +I R D + FF + +N I+ K Sbjct: 285 AVTLIDVIDQTTTAMGGRMLKRWLAFPLKNKEQIEKRHDIVEFFTNSSETLNAIKLEFKR 344 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS 430 D+ R +S++ +G+ P+++ +++ + A+E +KK+ +S Sbjct: 345 MSDLERLVSKVAVGKICPREVVQLKNSLE--------------------AIEPVKKIAES 384 Query: 431 LEKTLSSMLSDDL------------------PTFKRDGGFLRDGADASLDETRSLRDQSK 472 +L D+L P G + G ++ LDE R L K Sbjct: 385 SGNKALQVLGDNLNACTHITRLIKESIDEEAPVNILKGRTIAAGYNSELDELRGLATSGK 444 Query: 473 RIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNL 532 + ++ ++ EET I +LKI NN GY+IEV ++ KD + + +I +QT+ N Sbjct: 445 EYLDNMLARHTEETGITSLKIASNNVFGYYIEVRNTH-----KD-KVPEHWIRKQTLVNA 498 Query: 533 TRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIAL 592 R+ T EL + E +I A ++ E F+ + + I+ +++ + +Q+I +D ++ Sbjct: 499 ERYITEELKEYEAKILGAEERINALQQELFDKIVHEIVPFIKAIQSNAQLIGQLDCLLSF 558 Query: 593 AILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKL 652 A A + NY RP + +K+GRHP++EK L + KP+I ND L D++ ++ Sbjct: 559 ASHAIQSNYVRPQLLEGDALEIKEGRHPVIEKMLP--ADKPYIPNDVLL----DQDQQQI 612 Query: 653 WLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRST 712 ++TGPNM GKS LRQ ALIV+++QMGS+VPAS +GIVDK+F+RVG++DN++ G ST Sbjct: 613 IMITGPNMSGKSAILRQTALIVLLSQMGSFVPASEVKMGIVDKIFTRVGASDNISQGEST 672 Query: 713 FMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC-RGLLATH 771 FM EM E+ASILN + S V+LDEIGRGT+T DG+SIAWA EYLHE + L ATH Sbjct: 673 FMTEMNESASILNNISKGSLVLLDEIGRGTSTYDGISIAWAITEYLHEHPFMPKTLFATH 732 Query: 772 FHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISR 831 +HEL ++++ R N ++V + + ++F+ K+IPG + HS+GI V K+AG+P V+ + Sbjct: 733 YHELNEMTELFNRIKNYNVEVKELKDKVLFMRKLIPGGSHHSFGIHVAKMAGMPQQVLKK 792 Query: 832 AYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIK----CLNLDEMSP 887 A ILK EK H Q+D + + Q +E + + D ++ IK +++D ++P Sbjct: 793 ANKILKRLEK--SHQQEDSKKVLQDTQEEEMQLSFFNLDDPLLQNIKEEILMVDIDTLTP 850 Query: 888 LTALKTLYAVK 898 + AL L +K Sbjct: 851 VEALMKLNEIK 861 >gi|50119993|ref|YP_049160.1| DNA mismatch repair protein MutS [Pectobacterium atrosepticum SCRI1043] gi|81693385|sp|Q6D8C1|MUTS_ERWCT RecName: Full=DNA mismatch repair protein mutS gi|49610519|emb|CAG73964.1| DNA mismatch repair protein [Pectobacterium atrosepticum SCRI1043] Length = 854 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 309/897 (34%), Positives = 479/897 (53%), Gaps = 60/897 (6%) Query: 13 SEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTK 72 SE IDL + TPMM+QY +K+ +P+ L+FYRMGDFYELFFDDA AS+ L I+LTK Sbjct: 4 SEGIDL----STHTPMMQQYFRLKAEHPEILLFYRMGDFYELFFDDAKRASQLLDISLTK 59 Query: 73 RGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVR 132 RG G+ IPM GVP H +Y+ +L+++G +AICEQI P +K V R VVR Sbjct: 60 RGASAGEPIPMAGVPHHAVENYLARLVQMGESVAICEQIGDPAT-----SKGPVERKVVR 114 Query: 133 LVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMR 191 +VTPGT++++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R Sbjct: 115 IVTPGTISDEALLQEKQDNLLAAIWQDGRGFGYATLDISSGRFRVSEPADRETMAAELQR 174 Query: 192 IDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG- 250 +P E+++ E E L + + +P F+ + ++ + + FG Sbjct: 175 TNPAELLYPES----FESMELIDNRHGLR-RRPMWEFEPDTARQQLNLQFGTRDLTGFGV 229 Query: 251 SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR 310 +++ AA + Y K TQ + P I E Q + +D+A R NLE+ + LSG Sbjct: 230 EQAKLALRAAGCLLQYAKDTQRTSLPHIRGITMERQQDGIIMDAATRRNLELTQNLSGGV 289 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINP-IQKILK 369 E +L +D ++T G R+ I P D + R +I+ + I P +Q L+ Sbjct: 290 ENTLAAVLDCTVTAMGSRMLKRWIHMPSRDIDALKQRQQAISALQE----ITPDLQPYLR 345 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKL 427 D+ R L+RL + P+D+A +R + +I L D L + + +L Sbjct: 346 QVGDLERILARLALRTARPRDLARMRHAFQQFPDIREQLAPLDTDSVRRLVSLIGQFDEL 405 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 LE+ + + P RDGG + G LDE R+L D + + L+++ E+ Sbjct: 406 RDLLERAVV----EAPPVLVRDGGVIAPGYHTELDEWRALADGASDYLDRLEIREREKLG 461 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 + LK+ N GY+I+V+ + ++ ++ RQT+ N R+ EL + E+++ Sbjct: 462 LDTLKVGFNGVHGYYIQVSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKV 515 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 + AL +E ++ L + ++ L ++ +A +D+ LA A NY P + Sbjct: 516 LTSKGKALALEKALYDELFDLLLPHLAELQQSAAALAELDVLTNLAERADTLNYVCPTLS 575 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 + + GRHP+VE+ L++ PFI+N LS ++ ++TGPNMGGKST++ Sbjct: 576 DKPGIKIAGGRHPVVEQVLRE----PFISNPLSLSPQR-----RMLIITGPNMGGKSTYM 626 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ ALIV+MA +G +VPA A IG VD++F+RVG+AD+LASGRSTFMVEM ETA+IL+ A Sbjct: 627 RQAALIVLMAHIGCFVPADQAVIGPVDRIFTRVGAADDLASGRSTFMVEMTETANILHNA 686 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 T S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N Sbjct: 687 TENSLVLMDEIGRGTSTYDGLSLAWACAESLANRIKAMTLFATHYFELTTLPEKMEGVVN 746 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL----- 842 L + + I F+H V G A SYG+ V LAG+P VI RA LK E L Sbjct: 747 VHLDAREHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLKELETLSNNAS 806 Query: 843 -YHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 H + + L + T E +E ++ ++ D ++P AL LY +K Sbjct: 807 SSHIDGAQLAL----LNTDEPSPA--------IEALEAIDPDALTPRQALDWLYQLK 851 >gi|300922252|ref|ZP_07138378.1| DNA mismatch repair protein MutS [Escherichia coli MS 182-1] gi|301326231|ref|ZP_07219614.1| DNA mismatch repair protein MutS [Escherichia coli MS 78-1] gi|300421382|gb|EFK04693.1| DNA mismatch repair protein MutS [Escherichia coli MS 182-1] gi|300847076|gb|EFK74836.1| DNA mismatch repair protein MutS [Escherichia coli MS 78-1] Length = 853 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 314/900 (34%), Positives = 485/900 (53%), Gaps = 73/900 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFIDKPGIRITEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 740 EGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 799 Query: 843 YHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + Q D T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 800 SPNAAATQVD--------GTQMSLLSVPEEISPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|37930232|gb|AAP76283.1| MutS [Pseudomonas sp. PCL1171] Length = 864 Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust. Identities = 308/889 (34%), Positives = 480/889 (53%), Gaps = 45/889 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L S TPMM+QY +K+ +PD L+FYRMGDFYE+F++DA A++ L ITLT RG+ G+ Sbjct: 7 DLSSHTPMMQQYWRLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQS 66 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCG+P H+ Y+ KL+K+G + ICEQI P + K V R VVR++TPGT++ Sbjct: 67 IPMCGIPYHSLEGYLVKLVKLGESVVICEQIGDPATS-----KGPVERQVVRIITPGTVS 121 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIF 199 ++ LL N + AV + ++ +DI++G F + + L++++ RI+P E++ Sbjct: 122 DEALLDERRDNLIAAVLGDERLFGLSVLDITSGNFSVQEIKGWENLLAELERINPVELLI 181 Query: 200 SE---KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 + K+L + + G A + F+ + + +++ + FG + Sbjct: 182 PDDWPKDLPAEKRR------GTKRRAPWD--FERDSALKSLCQQFSLQDLKGFGCETLTL 233 Query: 257 KTAAAAA-ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA +SY K+TQ P + E + T+ +D A+R NLE+ L+G R+ +L Sbjct: 234 AIGAAGCLLSYAKETQRTALPHLRSLRHERLDDTVVLDGASRRNLELDTNLAGGRDNTLQ 293 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D T G RL + PL D + R SI + +Q LK D+ Sbjct: 294 SVVDRCQTAMGSRLLTRWLNRPLRDLGVLQARQSSITCLLDG-YRFEKLQPQLKEIGDIE 352 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEK 433 R L+R+ + P+D+A +RD + + + + D P ++L L LEK Sbjct: 353 RILARIGLRNARPRDLARLRDALGALPQLQMAMTELDTPHLQQLAVTAGTYPDLAALLEK 412 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + D+ P RDGG L+ G D LDE +SL + + + + L+ + T + NLK+ Sbjct: 413 A----IIDNPPAIIRDGGVLKTGYDTELDELQSLSENAGQFLIDLEAREKARTGLANLKV 468 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GYFIE+ S A D + RQT+ RF T EL + E++ +A + Sbjct: 469 GYNRVHGYFIELPSKQAESAPID------YQRRQTLKGAERFITPELKEFEDKPLSAKSP 522 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY-CRPIIDNSTNF 612 E +E L +I + L + + +A +D+ LA A + C + Sbjct: 523 CPAREKMLYESLLEDLISRLAPLQDTAAALAELDVLSNLAERALNLDLNCPRFVSEPCMQ 582 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 G HP+VE+ L + PF+AND L + ++ ++TGPNMGGKST++RQ AL Sbjct: 583 DQSRGSHPVVEQVL----TTPFVANDLSLD-----DDTRMLVITGPNMGGKSTYMRQTAL 633 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 IV++A +GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT +S Sbjct: 634 IVLLAHIGSFVPAASCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSL 693 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 V++DE+GRGT+T DGLS+AWA E L R L ATH+ ELT L +S N L Sbjct: 694 VLMDEVGRGTSTFDGLSLAWAAAERLAHL-RAYTLFATHYFELTVLPESEPLVANVHLNA 752 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--KLYHHNQKDM 850 ++ NE I+FLH V+PG A SYG+ V +LAG+PN VI+RA + L E L H Sbjct: 753 TEHNERIVFLHHVLPGPASQSYGLAVAQLAGVPNDVITRAREHLSRLETTALPHETVVAN 812 Query: 851 RLYYP-EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P + T + + ++++ L++D+++P AL+ LYA+K Sbjct: 813 PAKAPRKPSTPHQSDMFASLPHPVLDELAKLDVDDLTPRKALEMLYALK 861 >gi|320173418|gb|EFW48617.1| DNA mismatch repair protein MutS [Shigella dysenteriae CDC 74-1112] Length = 853 Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust. Identities = 314/900 (34%), Positives = 484/900 (53%), Gaps = 73/900 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+ +K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLRLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAGLQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALTDGATDYLERLEVRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFIDKPGIRITEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 740 EDVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 799 Query: 843 YHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + Q D T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 800 SPNAAATQVD--------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|323489618|ref|ZP_08094845.1| DNA mismatch repair protein [Planococcus donghaensis MPA1U2] gi|323396749|gb|EGA89568.1| DNA mismatch repair protein [Planococcus donghaensis MPA1U2] Length = 883 Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust. Identities = 303/883 (34%), Positives = 494/883 (55%), Gaps = 58/883 (6%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 + TPMM+QY ++KS D+ +F+R+GDFYELF+DDA+ AS+ L ITLT RG + IPM Sbjct: 46 APTPMMQQYFQVKSEYLDAFLFFRLGDFYELFYDDAIKASQLLEITLTARGGNGDDRIPM 105 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVP H A +YI +LI GH++AICEQ+E P + K +V+R VVRL+TPGT TE + Sbjct: 106 CGVPHHAAKNYIDQLILKGHKVAICEQVEDP-----KTTKGVVKREVVRLITPGTHTEGK 160 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-----DRLISDIMRIDPREII 198 + + +L A + +A++++DISTG ST+ + L+ ++ + RE++ Sbjct: 161 SVDSKSNVFLAAADELADGFALSYVDISTGE---STATYIMGTEKALLQELRSLSIRELV 217 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 SE+ LF L D +S + D Y + T ++ T Sbjct: 218 VSEQ---------LFVLLTEEEQ-------DLVLSIETMEDAYQMNASLTVDCPEDLQ-T 260 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKT 317 + ++YI +TQ + I ++ L ID ++ NLE+L+++ G+ + +LL Sbjct: 261 SCHRLMTYIARTQKQSLDHIQAFAYKENNQLLSIDFHSKRNLELLQSIRGNETKGTLLWL 320 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D ++T G R + + PL + I R + I+ + +Q +LK D+ R Sbjct: 321 LDETMTAMGSRKLKQWLHQPLANKRMIEERQRMVAALIEQYFVRVELQSLLKEVYDLERL 380 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 R+ G +D+A +R + ++ K+ P L EKL + + E L Sbjct: 381 SGRIAFGSASGRDLAQLRSSLEKVPMLIEELEKSGDPALLEFG-EKLDRCIEVCE--LLQ 437 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 +S++ P ++GG +RDG LDE R K IA L+ K + T IK+LKI +N Sbjct: 438 AISENPPLSSKEGGVIRDGFHERLDEFRDASRNGKDWIAELEQKERQLTGIKSLKIGYNR 497 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IE+ S A++ DLE DR +QT++N R+TT EL + E I A +L + Sbjct: 498 IFGYYIEI--SKANMHLADLERYDR---KQTLANAERYTTPELKEKEALILTAEEESLAL 552 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E E F + + + + + + ++ +D+ ++ A +A++ + +P ++ + +G Sbjct: 553 EYELFVAIRDEVKQYISRIQRLASSLSGLDVFLSFANVAEKYRFVKPDFNDLNEIAIIEG 612 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VEK L +Q ++ NDC L+ + + L+TGPNM GKST++RQ AL +++A Sbjct: 613 RHPVVEKMLNKQH---YVPNDCVLA-----ENQNMLLITGPNMSGKSTYMRQVALTIVLA 664 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+GSYVPA A++ IVD++F+R+G+AD+L SG+STFMVEM+E+ + AT S ++ DE Sbjct: 665 QIGSYVPAESANLPIVDQIFTRIGAADDLVSGQSTFMVEMLESQYAITHATKNSLLLFDE 724 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGT+T DG+++A + IEY+H L +TH+HELT L SL++ HN + + + Sbjct: 725 IGRGTSTYDGMALAQSMIEYIHREIGANTLFSTHYHELTALENSLEKLHNVHVAAMEQSG 784 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL--YYP 855 ++FLHKV G AD SYGI V +LA LP +++RA ++LKTFE+ K + ++ Sbjct: 785 KVVFLHKVKKGPADKSYGIHVAELANLPEPILTRARELLKTFEQDKKQQPKTIEQLSFFD 844 Query: 856 EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E T++ + ++ IK + + M+PL AL+ ++ ++ Sbjct: 845 EADTEKDE---------ILQAIKDVQVSAMTPLQALQMIHDLQ 878 >gi|307729270|ref|YP_003906494.1| DNA mismatch repair protein MutS [Burkholderia sp. CCGE1003] gi|307583805|gb|ADN57203.1| DNA mismatch repair protein MutS [Burkholderia sp. CCGE1003] Length = 891 Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust. Identities = 315/906 (34%), Positives = 468/906 (51%), Gaps = 68/906 (7%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 ++ TPMM+QY+ IK+ +P +LVFYRMGDFYELFFDDA A+R L +TLT+RG G Sbjct: 10 DVAQHTPMMQQYLRIKAKHPGTLVFYRMGDFYELFFDDAEKAARLLDLTLTQRGASAGNP 69 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 I M GVP H Y+ KL+K+G +AICEQI P +K V R VVR+VTPGTLT Sbjct: 70 IKMAGVPHHAVEQYLAKLVKLGESVAICEQIGDPAT-----SKGPVERKVVRVVTPGTLT 124 Query: 141 EDQLLSPTDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDP 194 + LLS + +LMA+ + T +AW+++++G +++ D++ + + RIDP Sbjct: 125 DAALLSDKNDVFLMAMCVAHNRRGVATSVGLAWLNLASGALRLAEVAPDQVAATLERIDP 184 Query: 195 REIIFSEKELSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFGSFS 253 EI+ ++ + A+ GN A+ + P FD + R+ D + +D FG+ S Sbjct: 185 AEILVADTD---ADTAGSAPPTGNRALTRVPAWHFDVASGTQRLCDQLEVAGLDGFGAHS 241 Query: 254 -QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 AA A + Y TQ + + E + +D A R NLEI +TL G+ Sbjct: 242 LTCACGAAGALLLYAAATQGQQLRHVRSLKVEHESEYIGLDPATRRNLEITQTLRGTESP 301 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL--INPIQKILKS 370 +L +D T G RL + P D +R ++ ++ P ++ ++ L+ Sbjct: 302 TLCSLLDTCCTTMGSRLLRHWLHHPPRDPVHAQSRQQAVGALLEAPAGADVDALRGALRH 361 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL--- 427 D+ R RL + P+D++ +RD +L +L + L Sbjct: 362 ISDIERITGRLALLSARPRDLSSLRD---------TFIALPELRAKLAAVTSNAQSLARI 412 Query: 428 ------PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLK 481 PQ+ + L ++ + RDGG + G DA LDE R + + + + L+ + Sbjct: 413 DTSLEPPQACVELLVRAIAPEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLETR 472 Query: 482 YAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELI 541 T I NL++++N G++IEVT + D + RQT+ N R+ T EL Sbjct: 473 ERARTGIGNLRVEYNKVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELK 526 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 E++ +A AL E +E L A++ + +A +D+ A A A+ ++ Sbjct: 527 TFEDKALSAQERALARERSLYEALLQALLPFIPDCQRVASALAELDLLAAFAERARALDW 586 Query: 602 CRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 P ++ GRHP+VE ++Q F ANDC L+ KL L+TGPNMG Sbjct: 587 VAPRFSADAGIDIEQGRHPVVEAQVEQ-----FTANDCTLT-----PERKLLLITGPNMG 636 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKSTF+RQ ALI ++A +GSYVPA A G VD++F+R+G+AD+LA GRSTFMVEM E A Sbjct: 637 GKSTFMRQTALITLLAYVGSYVPARRAAFGPVDRIFTRIGAADDLAGGRSTFMVEMTEAA 696 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS 781 +ILN AT QS V++DEIGRGT+T DGL++AWA +L N C L ATH+ ELT L Sbjct: 697 AILNDATPQSLVLMDEIGRGTSTFDGLALAWAIARHLLAHNGCHTLFATHYFELTQLPAE 756 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 + N L + I+FLH V G A SYG+QV +LAG+PN VI A L E+ Sbjct: 757 FPQAANVHLSAVEHGRSIVFLHAVNEGPASQSYGLQVAQLAGVPNAVIRSARKHLVYLEQ 816 Query: 842 LYHHN---QKDMRLYYP---------EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLT 889 Q D+ P E QT + L + VE+++ ++ +++ P Sbjct: 817 QSAGQPAPQLDLFAAPPALLEDADDDEPQTGQEAPAL----QALVERLRGIDPNDLRPRE 872 Query: 890 ALKTLY 895 AL LY Sbjct: 873 ALDLLY 878 >gi|300906762|ref|ZP_07124444.1| DNA mismatch repair protein MutS [Escherichia coli MS 84-1] gi|300401456|gb|EFJ84994.1| DNA mismatch repair protein MutS [Escherichia coli MS 84-1] Length = 853 Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust. Identities = 314/900 (34%), Positives = 483/900 (53%), Gaps = 73/900 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+ +K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLRLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D +T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCPVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFIDKPGIRITEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 740 EGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 799 Query: 843 YHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + Q D T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 800 SPNAAATQVD--------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|256420944|ref|YP_003121597.1| DNA mismatch repair protein MutS [Chitinophaga pinensis DSM 2588] gi|256035852|gb|ACU59396.1| DNA mismatch repair protein MutS [Chitinophaga pinensis DSM 2588] Length = 868 Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust. Identities = 300/884 (33%), Positives = 487/884 (55%), Gaps = 38/884 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M+Q+ IK+ PD+++ +R+GDFYE F DDA++AS+ LGI LTKR + G Sbjct: 9 TPLMQQHNAIKARYPDAVLLFRVGDFYETFNDDAIIASKVLGIVLTKRANGSASQQDLAG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H+ + Y+ KL+K G+R+A+C+Q+E P AK +V+R V +VTPG D++L Sbjct: 69 FPHHSLDTYLHKLVKAGYRVAVCDQLEDPKMAK-----GIVKRGVTEMVTPGVAVNDKIL 123 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 +N+L AV + +A++DISTG F ++ N + + + P E+IF+ + Sbjct: 124 ENASNNFLAAVHFGKELTGVAFLDISTGEFFVAQGNLEYVDKLLQSFKPAEVIFARPQQK 183 Query: 206 H--AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAAAA 262 H ++ S F T F + +E + + ++ FG Q AA A Sbjct: 184 HFKEQFGSKFYT-----YTLEEWIFTTNYAEETLLKQFETHSLKGFGVDGLQDAIIAAGA 238 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 + Y++ T+ + I +R + L++D NLE+L + S +LLKT+D ++ Sbjct: 239 CLHYLRDTEHPHLQHITNIQRIEQDDFLWMDRFTIRNLELLGS-SVENGHTLLKTLDTTV 297 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G RL + PL D +IN RLD FI+ L + + LK + D+ R +S++ Sbjct: 298 TPMGARLLKRWMVLPLRDIKQINERLDVTEHFIKETDLSRDVLQHLKQTGDLERLVSKIP 357 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 + + P+++ ++ ++ I L K P L EKL P L + L ++ + Sbjct: 358 LRKINPREVMMLAKALQQVEGIKQLLAKTGHPY-LTAIGEKLNPCPGILCRILEQIV-ET 415 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P GG +++G LD R++ K + +Q ++ T I +LK+ NN GY+ Sbjct: 416 PPILVSKGGVIQNGIHTELDNLRTIAHSGKEYLLRIQQTESDATGIPSLKVAFNNVFGYY 475 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 +EVT++ S + ++ +I +QT++N R+ T EL + E +I A L +E++ F Sbjct: 476 LEVTNAHKSKVPEN------WIRKQTLANAERYITPELKEYEEKIVGAEEKILALEIQLF 529 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 + L A+ +++ +Q++A +D ++ A A + Y RP + + +++GRHP++ Sbjct: 530 DELLLALQPHIQAIQQNAQLMARLDCLLSFANNAIQYKYRRPNVTEGYHLDIREGRHPVI 589 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 E+ L S ++AND L DK ++ +LTGPNM GKS LRQ ALI +MA MGS+ Sbjct: 590 ERGLPPGES--YVANDIVL----DKEEQQIIILTGPNMSGKSALLRQTALITLMAHMGSF 643 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPAS A IG+ DK+F+RVG++DNL+ G STFMVEM ETASI+N T +S VILDEIGRGT Sbjct: 644 VPASAAEIGLTDKIFTRVGASDNLSGGESTFMVEMNETASIINNITPRSLVILDEIGRGT 703 Query: 743 ATLDGLSIAWATIEYLHET--NRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 +T DG+SIAW+ +EYLH+ ++ + L ATH+HEL +L R N + +S +I Sbjct: 704 STYDGISIAWSIVEYLHDMTPHKPKTLFATHYHELNELENKHGRIKNYHITNKESGNKVI 763 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 FL K+ PG + HS+GI V ++AG+P ++ RA ++L E+ H + + E+ Sbjct: 764 FLRKLAPGGSRHSFGIHVARMAGMPPQLLQRANEVLSHLEQ--KHIDAPLEKHVKEMAGP 821 Query: 861 ESKNNLSKND------KLFVEKIKCLNLDEMSPLTALKTLYAVK 898 K LS D K + + ++++ ++P+ AL L +K Sbjct: 822 TQKVQLSIFDAHSDTFKEIRDMLNDVDINRLTPVEALLKLNEIK 865 >gi|298242708|ref|ZP_06966515.1| DNA mismatch repair protein MutS [Ktedonobacter racemifer DSM 44963] gi|297555762|gb|EFH89626.1| DNA mismatch repair protein MutS [Ktedonobacter racemifer DSM 44963] Length = 893 Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust. Identities = 295/832 (35%), Positives = 474/832 (56%), Gaps = 45/832 (5%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TP +QY+ IKS PD+L+ Y++GDF+E F +DA +A+R L I LT R + + +P+ Sbjct: 2 TTPARKQYLRIKSQYPDTLLMYQVGDFFETFDEDARIAARELQIVLTSR-MYGNEAVPLA 60 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G+P+H N+YI KLI G+++++CEQ+ + +V R V R++T GTL+E L Sbjct: 61 GIPLHALNNYIGKLITAGYKVSVCEQVGEV-------GRGVVDRAVTRILTAGTLSEPNL 113 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI----SDIMRIDPREIIFS 200 L +NYL+A+A R + A+A +D+STG F ++ + L +++ R++P E + + Sbjct: 114 LPARQNNYLVAIAMGRVQTALAAVDVSTGEFLVTWFRSEELPVALDAELQRLNPVECLLA 173 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 E A Y+ F T A P FF+ +++ R+ + + +++ +G + AA Sbjct: 174 EGSNREA-YR--FPTQTVTVTACPGHFFNSEMAQDRLCKLFGVQSLEAYGCAHIPQAVAA 230 Query: 261 AAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILR-TLSGSREQSLLKTI 318 A AI +Y++K + + S + +D+ + NLE+L+ T SGS + SLL + Sbjct: 231 AGAIVTYLEKMNNGLLALLTGLKSYRTSSYMVLDAHTQRNLELLQGTRSGSVQGSLLGVL 290 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D +IT G R + I PL D +++ RL S+ ++P L + L+ D+ R Sbjct: 291 DRTITPMGAREMRKTITQPLLDLNELDARLGSVEELFESPALRSRFTMSLQVFSDMERIA 350 Query: 379 SRLKIGRGEPKDIAVIRDGI------RSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE 432 R++ G ++ +RD + R + L +L EE++ E + + ++L Sbjct: 351 GRIRQGTAVRNEVLGLRDNLEHVPELRELLRGCEALLLRELAEEMQDCQEVIDLVDRAL- 409 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDET-RSLRDQSKRIIASLQLKYAEETKIKNL 491 M S + DG +R G D LDE S+RD S+R + SL+ + E T IK+L Sbjct: 410 -----MRSGEEDEHGDDGRLIRQGYDTELDELFASIRD-SRRWMVSLEGRERERTGIKSL 463 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 K+ N GY+IEV++++ ++ D ++ +QT+ N RF T EL + E RI +A Sbjct: 464 KVGFNKVFGYYIEVSNANLKLVPGD------YMRKQTLVNAERFITPELKEHEARILSAV 517 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 +E + + I L + ++++A +D+ ++ A++A Q Y RP ++ Sbjct: 518 ERIEEMEKGLYGEVLRQISVYYAQLAHTARLVARVDVLLSFAVVAVHQGYTRPQLEQGHG 577 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 ++DGRHP+VE L FI ND + + ++ LLTGPNM GKST+LRQ A Sbjct: 578 IDIRDGRHPVVEYAL---DGDVFIPNDTQMEADEGR---RIMLLTGPNMAGKSTYLRQVA 631 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LI +MAQ+GS+VPA A IG+VD++F+RVG+ D++A+G+STFMVEM ET +IL+ AT S Sbjct: 632 LITLMAQIGSFVPARQARIGVVDRIFTRVGAEDDIAAGKSTFMVEMEETGTILHHATPHS 691 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 +ILDEIGRGT+T DGL+IA A +E+LH + R L ATH+HEL L++ L + Sbjct: 692 LLILDEIGRGTSTYDGLAIARAVVEHLHSRLKARTLFATHYHELAALAEELPHLCVHAMA 751 Query: 792 VSDSNE--GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 +SD +E I+FLHKV+ G A SYG+ V +LAG+P +++ RA +IL E+ Sbjct: 752 ISDEDEHASIVFLHKVVEGSAGKSYGVHVARLAGMPMSIVERAEEILYQLEE 803 >gi|268591354|ref|ZP_06125575.1| DNA mismatch repair protein MutS [Providencia rettgeri DSM 1131] gi|291313331|gb|EFE53784.1| DNA mismatch repair protein MutS [Providencia rettgeri DSM 1131] Length = 855 Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust. Identities = 295/828 (35%), Positives = 466/828 (56%), Gaps = 40/828 (4%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 +++ +S TPMM+QY+++K+ + D L+FYRMGDFYELFFDDA AS+ L I+LTKRG+ G Sbjct: 4 KQSFESHTPMMQQYLKLKAQHSDILLFYRMGDFYELFFDDAKKASQLLDISLTKRGQSAG 63 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM GVP H A Y+ KL+++G +AICEQI P +K V R VVR+VTPGT Sbjct: 64 QPIPMAGVPHHAAEGYLAKLVQMGESVAICEQIGDPATSK-----GPVERQVVRIVTPGT 118 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 +T++ LL+ N L AV + + + A +DI++G F IS ++ + L +++ R P E+ Sbjct: 119 ITDEALLNERQDNLLAAVWQDQQGFGFATLDITSGRFIISEIADEEALQAELQRSRPAEL 178 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 ++ E ++ S+ N + + P ++ ++ ++ + + FG Sbjct: 179 LYPE------DFASMALIEHNKGLRRRPLWEYELDTAKQQLGLQFGTKDLIGFG-VEDAH 231 Query: 257 KT--AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSL 314 K AA + Y+K TQ + P I E + +D+A R NLEI + L+G E +L Sbjct: 232 KALRAAGCLLQYVKDTQRTSLPHIRSIVMEKQNDNVILDAATRRNLEITQNLAGGTENTL 291 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 +D +T G R+ + +PL + +N R +I+ + + P L+ D+ Sbjct: 292 AAILDMCVTPMGSRMLKRWLHTPLRNIQVLNNRQQAISALQECGFELQPF---LRQIGDL 348 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLE 432 R L+RL + P+D+ +R + +I + ++ ++L+ + + +L LE Sbjct: 349 ERVLARLALRSARPRDLTRMRYAFQQYQDIHQILSQSSCSYLQDLQNRIGQFDELQDLLE 408 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 K + D P RDGG + G ++ LDE R+L D + + L+++ E+ I LK Sbjct: 409 KAII----DAPPVLVRDGGVIAPGYNSELDEWRALADGATDYLDRLEIREREKLGIDTLK 464 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 + +N GY+I+V+ + + + ++ RQT+ N R+ EL + E+++ + Sbjct: 465 VGYNAVHGYYIQVSRGQSHL------TPIHYVRRQTLKNAERYIIPELKEYEDKVLTSKG 518 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 AL IE ++ L + ++ +L +++ +A +D+ LA A+ Y P + Sbjct: 519 KALAIEKALYDELFDMLLPHLAALQTSAEALAELDVLANLAERAQTLGYACPQLTEKPGI 578 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 + +GRHP+VE+ L S+PFI+N LS +L ++TGPNMGGKST++RQ AL Sbjct: 579 QITEGRHPVVEQVL----SEPFISNPLSLSPQR-----RLLIITGPNMGGKSTYMRQTAL 629 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 I ++A +GS+VPAS A IG +D++F+RVG++D+LASGRSTFMVEM ETA+IL+ AT S Sbjct: 630 ITLLAYIGSFVPASKAVIGPIDRIFTRVGASDDLASGRSTFMVEMTETANILHNATEHSL 689 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + L+ N L Sbjct: 690 VLMDEIGRGTSTYDGLSLAWACAENLVNKIKAMTLFATHYFELTTLPEKLEGAVNIHLDA 749 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + + I F+H V G A SYG+ V LAG+P VI RA LK E Sbjct: 750 IEHGDTIAFMHNVQDGAASKSYGLAVASLAGVPKDVIKRAKQKLKELE 797 >gi|258405463|ref|YP_003198205.1| DNA mismatch repair protein MutS [Desulfohalobium retbaense DSM 5692] gi|257797690|gb|ACV68627.1| DNA mismatch repair protein MutS [Desulfohalobium retbaense DSM 5692] Length = 896 Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust. Identities = 313/914 (34%), Positives = 478/914 (52%), Gaps = 62/914 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM+ QY+ IK PD+L+F+RMGDFYELFF+DA A+R L ITLT R + +PM G Sbjct: 7 TPMLEQYLRIKEDYPDALLFFRMGDFYELFFEDAETAARVLQITLTSRNPNAETKVPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H Y+++L++ G+++AIC+Q+E P +AK LV+R V R++TPGT+ ED L Sbjct: 67 VPHHATEEYLRQLLEQGYKVAICDQVEDPRQAK-----GLVKREVTRVLTPGTVVEDSTL 121 Query: 146 SPTDSNYLMAVARIRTEW-------AIAWIDISTGIFKISTSNHD-RLISDIMRIDPREI 197 S SNYL AV W A AWID STG + S H +L +++I P+E+ Sbjct: 122 SAKTSNYLAAVC-----WHGGSKTGAAAWIDFSTGQWTGVQSKHQVQLWQWLIKIQPQEV 176 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRI---ADYYNITTVDTFGSFSQ 254 + E + + L + + N +F+ + R+ D ++T +D + Sbjct: 177 LMPEGTELPEQAQVLRD---KIQFCPYNGYFEPGRARERLLQAQDVASLTPLDLEDKPAL 233 Query: 255 VEKTAAAAAISYIKKTQMVNKPT-IGYPEREDIQSTLFI--DSAARSNLEILRTLSGSR- 310 V+ A A ++Y+ TQ + +G + + IQ F+ D NLE+ + L G + Sbjct: 234 VQ--ACGALLAYLHTTQRCEDLSHLG--QFQPIQPNRFLQLDEVTERNLELFQRLDGGKG 289 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 +L +D ++T GGRL +R+ P D I + + + L +++ L + Sbjct: 290 PGTLWHALDRTLTPMGGRLLQQRLRQPWRDLRTITAHQGVVALLVDDDGLRQSLRERLDA 349 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS 430 D+ R +R+ +GR PKD +R+ +++ + +L ++ EL G ++ Sbjct: 350 VYDLERLTTRIFLGRCTPKDFIALRNSLKALPALQSLLEEDRQWPELLGQEKRAWDNLDD 409 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 + + L L D P +GG R G D LDE L + + + L K + + + Sbjct: 410 VRELLERSLVDAPPLVITEGGLFRHGFDPELDELLDLSEDGEGRLQELLHKEQQASSLPK 469 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ +N GY+ E++ + + D FI RQT+ N R+ T EL +E+++ +A Sbjct: 470 LKLGYNRVFGYYFELSKAHKGPVP------DHFIRRQTLVNAERYITEELKTIEDKVFSA 523 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 +E F+ L + E + + ++A +D LA A++ + +P + + Sbjct: 524 AEKRKGLEYNLFQNLREQVAAHRERVMAVAGILARLDYWQGLAHAARQWEWSQPELHSGL 583 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 + + GRHP VE T Q +I ND + + ++ L+TGPNM GKST LRQ Sbjct: 584 DLRIIGGRHPAVEAT---QGRTDYIPNDVRI-----EGDDRVLLITGPNMAGKSTVLRQT 635 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 A+I I+AQ+GS+VPA IG+ D++F+RVG++DNLA G+STFMVEM ETA IL QA+ Sbjct: 636 AIICILAQIGSFVPAREGWIGLCDRIFTRVGASDNLAQGQSTFMVEMTETARILRQASRN 695 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNA 788 S VILDEIGRGT+T DGL++AWA +E L + R L ATH+HELTDL L N Sbjct: 696 SLVILDEIGRGTSTFDGLALAWAVVEDLVQRGHGGVRTLFATHYHELTDLEGQLPGVRNY 755 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL-----------K 837 + V + I+FL +++PG AD SYGI+V +LAG+P V+ RA IL Sbjct: 756 NIAVKEWRGDIVFLRRLVPGPADRSYGIEVSQLAGVPQGVVKRAKAILAQLEEKSRGLRH 815 Query: 838 TFEKLYHHNQKDMRLYY--PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 T EK H Q + + PE E + E ++ L+L+ M+PL AL L Sbjct: 816 TPEKGSHRQQSLLPGLFDPPEKPQPEPTAPQDQGPHPLEEALQELDLNGMTPLDALNLLS 875 Query: 896 AVK-AWTLEKYSTD 908 K WT S D Sbjct: 876 RWKHEWTPPHDSQD 889 >gi|304310611|ref|YP_003810209.1| DNA mismatch repair protein MutS [gamma proteobacterium HdN1] gi|301796344|emb|CBL44552.1| DNA mismatch repair protein MutS [gamma proteobacterium HdN1] Length = 869 Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust. Identities = 307/894 (34%), Positives = 472/894 (52%), Gaps = 32/894 (3%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 +EE L+ TP+M+QY+ +K+ +P +L+FYRMGDFYELFF DA+ A+ L ITLT RG+ Sbjct: 2 IEEELQKHTPVMQQYLRMKAEHPQALLFYRMGDFYELFFQDAITAASLLDITLTHRGQSA 61 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G+ IPM GVP H A Y+ +L+K+G +A+ EQI E K + R VVR+VTPG Sbjct: 62 GEPIPMAGVPYHAAEGYLARLVKLGVSVAVAEQIGEASE-----TKGPMERKVVRIVTPG 116 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTS-NHDRLISDIMRIDPRE 196 T++++ LL N L AV + IA +DIS+G F +S + L +++ R+ P E Sbjct: 117 TVSDEALLDERRDNLLCAVFSQEDRFGIAALDISSGRFSVSEAQGFAALDAELGRLAPAE 176 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 ++ E A + L G +P F+H + + + FG + Sbjct: 177 LLIQEDS---AIAQHLHARRG--LRPRPEWHFEHESARRLLISQLGTHDLQGFGC-EHLS 230 Query: 257 KTAAAAA--ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSL 314 K AAA + Y+K+TQ P I E ++ + +D++ R NLE++ LSG +L Sbjct: 231 KAIAAAGCLLQYVKETQRAALPHIRALTVESLEDAVILDASTRRNLELVENLSGGEIHTL 290 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 +D + T G RL + PL + + R +I+ + N IQ+ L S D+ Sbjct: 291 AWVMDRARTAMGSRLLRRWLNRPLRHRSTLIERQGAIHALL-NEYAFERIQEPLHSIGDI 349 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R L+R+ + P+D+ +RD + + + L N + + P +L Sbjct: 350 ERILTRVALRSARPRDLTRLRDALER-LPEVQTILANIESTRIHQLAHTIATFP-ALTDE 407 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L L + P R+GG + G D LDE R++ + + + L+ + T + LKI Sbjct: 408 LKRALVETPPLLAREGGVIATGFDDELDELRAISENAGDFLVKLEETERQRTGLSTLKIG 467 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+IE++ S A D + RQT+ N R+ T +L E++ +A + A Sbjct: 468 YNRIHGYYIELSRSQAEQAPTD------YTRRQTLKNAERYITPQLKAFEDKALSARSRA 521 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L E ++ L I + +L N++ IA +D+ LA A + P++D+ + Sbjct: 522 LNREKLLYDTLLERIATELGALQNSAAAIAELDVLANLAERADALAFTCPVLDDRPGIHI 581 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 GRHP+VE+ L F ND L ND++ ++ ++TGPNMGGKSTF+RQ AL+ Sbjct: 582 SKGRHPVVEQVLDGH----FTPNDLQL---NDQH--RMLIITGPNMGGKSTFMRQTALMA 632 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++A +GS+VPA +G +D++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT+QS V+ Sbjct: 633 VLAYIGSFVPAEQMTVGPIDRIFTRIGSSDDLAGGRSTFMVEMTETANILHNATHQSLVL 692 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AW+ +L R L ATH+ ELT L + N L + Sbjct: 693 MDEIGRGTSTFDGLSLAWSAAHHLAIQQRAFTLFATHYFELTSLPEQAPSAINVHLAACE 752 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 E I+FLH+V G A SYG+ V KLAG+P VI+ A L E QK Sbjct: 753 QGEDILFLHRVETGPASQSYGLAVAKLAGVPAQVIANARKKLHQLENPSSAKQKKNPAAA 812 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTLEKYSTD 908 P+ + V ++ ++ DE++P AL LY +K + E +S + Sbjct: 813 PQPPLQADMFAEPAPPHPAVVLLESIHPDELTPRQALDYLYQLKRLSGENFSPN 866 >gi|261414600|ref|YP_003248283.1| DNA mismatch repair protein MutS [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371056|gb|ACX73801.1| DNA mismatch repair protein MutS [Fibrobacter succinogenes subsp. succinogenes S85] Length = 879 Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust. Identities = 309/902 (34%), Positives = 480/902 (53%), Gaps = 60/902 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M+QY EIK NP ++F+RMGDF+ELF DDA++AS+ LG+TLT R P+CG Sbjct: 4 TPLMQQYYEIKKENPGCILFFRMGDFFELFEDDAVIASKILGLTLTSRNNGASGATPLCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H A Y+ K++ G+RIAICEQ+E P AK +V+R++V +++ GT ++ L Sbjct: 64 FPHHAAERYVPKMVAAGYRIAICEQVEDPKLAK-----GIVKRDIVEIISAGTAMNEENL 118 Query: 146 SPTDSNYLMAVARIRTE---------WAIAWIDISTGIFKISTSNHDRLISDIMRIDPRE 196 + ++NYL A ++ A A D++TG S+ + R P+E Sbjct: 119 NAKEANYLCAYVPATSDDGKGGNGDVAAFAIADVTTGYLATCRSSVQAFECEFSRRMPKE 178 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQV- 255 I+ E + L + + P + F ++ + ++ + +D G +V Sbjct: 179 IVIPEGTTIPSAIMDLIKAENVLVTELPAILFAEDQAKDVLFTHFKVEALDGLGLDGRVF 238 Query: 256 EKTAAAAAISYI---KKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 E + A + Y+ KK+++ + T+ E ++ + +D + NLE++R L+ Sbjct: 239 ETSVTGALLQYLINQKKSELSHFTTL---EILNLDDYMTLDPSTLRNLELVRPLNADDYS 295 Query: 313 S-LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 S L +D+++T GGR + ++ PL +I R +++ +QNP+ ++ +++ L S Sbjct: 296 STLCSVLDFTVTAMGGRTLKDWVSHPLIAVDRIREREEAVGELVQNPVALDELKESLTSI 355 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQ 429 D+ R + R+ GR +D+A + + + ++ L L E LR + K + Sbjct: 356 LDMERLMGRVGSGRANARDLAGMGRSLSQASKVADVLEGLHAPLFEGLRETLNAAKGRGE 415 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 L K +DDLP R+GG +R GA A LD + + IASL+ + E I Sbjct: 416 DLLK----YFNDDLPMTVREGGMIRPGASAELDAMNEDIKERREWIASLEGRERERLGIP 471 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 +LK+ +N GY+IE+T A + K D +I +QT N R+ T E+ + E+ I+N Sbjct: 472 SLKVGYNRVFGYYIEITK--AQMAKATQPIPDEYIRKQTTVNGERYITPEMKECESVISN 529 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 A + +E + F L + L + IA +D + A A++ NY P + Sbjct: 530 AEVNIHALEYKIFCELRERVNSWRAELQGIADAIARVDSLYSFARAARKYNYVCPEVFEG 589 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 T ++ G HP++ + F+ ND LS + +L L+TGPNM GKST+LRQ Sbjct: 590 TGIEIRGGFHPVI---VAVNPDLNFVPNDVTLS----PDGTRLMLITGPNMAGKSTYLRQ 642 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 LIV+MAQ+G +VPA A IG+VD++F+RVG++D L+ G STFMVEMIETA+IL AT Sbjct: 643 TGLIVLMAQIGCFVPAESARIGVVDRIFTRVGASDRLSRGLSTFMVEMIETANILRNATP 702 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLH-ETNR-CRGLLATHFHELTDLSKSLKRFHN 787 S V+LDEIGRGT+T DGLSIAWA +E LH E R L ATH+HELT L +SL+ N Sbjct: 703 HSLVLLDEIGRGTSTFDGLSIAWAIVETLHSEPARMALTLFATHYHELTGLVESLEHAGN 762 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY---- 843 + V + + + FLHK++ G D SYGI V ++AGLP V+ RA IL EK Sbjct: 763 FQVAVQEKGDKLTFLHKILEGACDSSYGIHVAEMAGLPPNVVRRARKILLRLEKQKIDPS 822 Query: 844 --HHNQK-----DMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYA 896 N+K M L+ P +N L ++I+ L +EM+P+ AL+ L Sbjct: 823 DEAQNKKIKAQPQMDLFAPP----------DENTLLLKDEIRRLKPEEMTPMQALQRLMD 872 Query: 897 VK 898 +K Sbjct: 873 LK 874 >gi|320202380|gb|EFW76950.1| DNA mismatch repair protein MutS [Escherichia coli EC4100B] Length = 853 Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust. Identities = 312/900 (34%), Positives = 484/900 (53%), Gaps = 73/900 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + ++G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNMAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFIDKPGIRITEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT + + Sbjct: 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQFPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 740 EGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 799 Query: 843 YHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + Q D T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 800 SPNAAATQVD--------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|302670850|ref|YP_003830810.1| DNA mismatch repair protein MutS [Butyrivibrio proteoclasticus B316] gi|302395323|gb|ADL34228.1| DNA mismatch repair protein MutS [Butyrivibrio proteoclasticus B316] Length = 880 Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust. Identities = 307/896 (34%), Positives = 506/896 (56%), Gaps = 48/896 (5%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+ Y++ K N D ++FYR+GDFYELFFDDA +AS+ L +TLT + L + PMCGVP Sbjct: 1 MMQHYLQTKKENKDCILFYRLGDFYELFFDDAKVASKELELTLTGKACGLEERAPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H + Y+ KL+ G+++AICEQ E P AK +V+R V R+VTPGT Q L Sbjct: 61 FHAVDSYLTKLVGRGYKVAICEQTEDPKLAK-----GIVKREVTRIVTPGTNLNMQSLEE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREIIFSEK-ELS 205 T +NY+M++ I+ D++TG + ++ + R + +I + P EII +E +S Sbjct: 116 TKNNYIMSILYSPDNIGISIADVTTGDYYLTEVDSLREALDEIGKYMPSEIICNESFSVS 175 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITT-----VDTFGSFSQVEKTAA 260 + + L + + + +FD S+ + ++ +++ VD F + AA Sbjct: 176 GVDMEDLRDRMQIFVNQLESRYFDEDSSKKLLMKHFKVSSLIGLGVDDFPNGV----VAA 231 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTID 319 A + Y+ Q + I + + +DS+ R NLE++ T+ +++ +LL +D Sbjct: 232 GALLQYLIDMQKSDVGNITHIYPYLASKYMLLDSSTRRNLELVETMRDKQKRGTLLWVLD 291 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G R I PL D +I R ++ ++N + I++ L D+ R +S Sbjct: 292 KTKTAMGARTLRSFIEQPLIDRNEILKRQSAVESLVKNVVSREEIREYLGPIYDLERLMS 351 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 ++ P+D+ R+ I I L EL + L L + + + + + Sbjct: 352 KIIYKTANPRDLLAFRNSISMIPAIKTALLDVQSDAELSALEDNLDAL-RDIYELIDQAI 410 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 ++ P ++ G +++G DA +D R K +A ++ E+T IKNL+IK++N Sbjct: 411 VEEPPLAIKESGIIKEGFDADIDHFREAGTNGKTWLAEMEESEKEKTGIKNLRIKYSNVF 470 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY EVT+S KD + + FI +QT++N R+TT EL +LE+ I NA + +E Sbjct: 471 GYSFEVTNSF-----KD-KVPEYFIRKQTLTNCERYTTPELKELEDTILNAQDKLNNLEY 524 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F + ++I + + + ++ IA++D+ +LA +A++ +Y +P I+ +K+GRH Sbjct: 525 EMFCKIRDSIALEIDRIQTTAKAIALLDVYASLAYVAEKNHYVKPSINEKGIINIKEGRH 584 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE+ L +S FI+ND L D + ++TGPNM GKST++RQ ALIV+MAQ+ Sbjct: 585 PVVERML--DTSDMFISNDTYL----DNKKHCISIITGPNMAGKSTYMRQTALIVLMAQI 638 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPAS A I +VD++F+RVG++D+L SG+STFMVEM E A+IL AT S +ILDEIG Sbjct: 639 GSFVPASKADICVVDRIFTRVGASDDLGSGQSTFMVEMNEVANILRNATPNSLLILDEIG 698 Query: 740 RGTATLDGLSIAWATIEYLHETNR----CRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 RGT+T DGL+IAWA E H +NR + L ATH+HELT+L + +N + V ++ Sbjct: 699 RGTSTYDGLAIAWAVTE--HISNRKILGAKTLFATHYHELTELEGKMDNVNNYCIAVKEN 756 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI------------LKTFEKLY 843 + I+FL K++ G AD SYGIQV KLAG+P+ VI RA +I +++ + Sbjct: 757 GDDIVFLRKIVKGGADKSYGIQVAKLAGVPDMVIDRAKEIVTELTDNDITEKVQSIAREN 816 Query: 844 HHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 +++K +Y E+ T + + D+ +++++ +++ ++P+ AL TLY +++ Sbjct: 817 KNDKKVKVKHYDEVDTHQMSLFDTVTDEDVLKRLQEIDITTLTPMDALNTLYKLQS 872 >gi|327439600|dbj|BAK15965.1| mismatch repair ATPase [Solibacillus silvestris StLB046] Length = 871 Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust. Identities = 296/825 (35%), Positives = 466/825 (56%), Gaps = 43/825 (5%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPMM+QY+ +K D+ +FYR+GDFYELFFDDA+ AS+ L ITLT R + I Sbjct: 1 MTTYTPMMQQYLLVKQDYKDAFLFYRLGDFYELFFDDAIKASQLLEITLTARSGNTDNPI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A YI+ L+ G ++A+CEQ E P AK +V+R VV+++TPGT+TE Sbjct: 61 PMCGVPHHSAQGYIETLVSKGFKVAVCEQTEDPKHAK-----GVVKREVVQVITPGTITE 115 Query: 142 DQLLSPTDSNYLMAVARIRT--EWAIAWIDISTGIFKIST--SNHDRLISDIMRIDPREI 197 + L SN+ +A A E A++D+STG S + +LI + +E+ Sbjct: 116 GKALD-GKSNHFIAAAESNENDEMVFAYLDVSTGEANCSVIEGSAKQLIQQVQAYAIKEL 174 Query: 198 IFSEK-ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 I +E+ +L A+Y G + ++ D + +A V G Sbjct: 175 IVNEQLQLLLADYAEA----GGIVLSLETEEMDPVKANQYVAHL----PVQLQG------ 220 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLL 315 A + Y+++TQM + I + + L ID+ ++ NLE+++++ G + +LL Sbjct: 221 --VAKRLLQYVERTQMRSLSHIQPFTYTEAHNFLRIDTNSKRNLELIQSIRGGDSKGTLL 278 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D ++T GGR + + PL I R + +++ L + + +LK+ D+ Sbjct: 279 WLLDETVTAMGGRKLKQWMHQPLAKKNAIEARQAIVTELLEDFFLRDELMSLLKNVYDLE 338 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R R+ G +D+A +R+ +R + ++ L N E+ +KL + +E+ L Sbjct: 339 RLAGRVAFGSVGGRDLAQLRESLRQ-VPMIQQKLVNSGLEKCTALGQKLD-VCADIEQLL 396 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + ++D P ++G +RDG +A LDE R K IA L+ K E T IKNLKI + Sbjct: 397 AEAITDQPPISIKEGDVIRDGYNAQLDEYRDASRNGKDWIAQLEQKERELTGIKNLKIGY 456 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+IE+T S + DL RF +QT++N RF T EL + E I NA +L Sbjct: 457 NRVFGYYIEITKSHLN--NTDLA---RFERKQTLANAERFITEELKEKEALILNAEEQSL 511 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E + F L + + + I+ +D+ ++ A++ + + +P+ + + Sbjct: 512 ALEYDLFVALREQLKGYIPRVQALAAQISELDVLMSFAMVTDKYRFTKPVFHDGRALKII 571 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 +GRHP+VEK L +QS ++ NDC L+ NDKN + L+TGPNM GKST++RQ ALIV+ Sbjct: 572 EGRHPVVEKMLNKQS---YVPNDCVLT--NDKN---MMLITGPNMSGKSTYMRQVALIVV 623 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +AQMG YVPA A + I D++F+R+G+AD+LA+G+STFMVEM+E+ + AT S ++ Sbjct: 624 LAQMGCYVPADEAILPITDQIFTRIGAADDLAAGQSTFMVEMLESQHAITHATKNSLLLF 683 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DG+S+A A +EY+H+ L +TH+HELTDL L R N + ++ Sbjct: 684 DEIGRGTSTYDGMSLAQAMMEYIHDEIGANTLFSTHYHELTDLENELSRLQNVHVSATEQ 743 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + ++FLHKV G AD SYG+ V +LA +P T++ RA +L+ FE Sbjct: 744 DGRVVFLHKVKKGAADKSYGVHVAELAEMPETILQRARVLLEQFE 788 >gi|304385250|ref|ZP_07367595.1| DNA mismatch repair protein MutS [Pediococcus acidilactici DSM 20284] gi|304328457|gb|EFL95678.1| DNA mismatch repair protein MutS [Pediococcus acidilactici DSM 20284] Length = 894 Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust. Identities = 296/831 (35%), Positives = 472/831 (56%), Gaps = 43/831 (5%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S TPMMRQY+EIK PD+ +FYR+GDFYELF+DDA+ S+ L +TLT R K+ IPM Sbjct: 6 SDTPMMRQYMEIKKQYPDAFLFYRIGDFYELFYDDAIKGSQLLELTLTARSKNADDPIPM 65 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVP H A +YI L+ G+++AICEQ+E P + K +V+R V++LVTPGT T+ + Sbjct: 66 CGVPHHAAQNYIDILVDQGYKVAICEQMEDP-----KAAKGMVKREVIQLVTPGTTTDQK 120 Query: 144 LLSPTDSNYLMAVA--RIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFS 200 ++NYL AV+ ++ A+ D+STG K++ + + ++++ + + REI+ Sbjct: 121 AEDAKENNYLTAVSFDAATKKYGFAYTDLSTGELKVAILDDIESVVNEAVGLRTREIVAD 180 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 + + H + F+ L N+ V+Q N D IS N+T+ Q+ Sbjct: 181 QYFVEH--FGERFKEL-NILVSQQN---DVEISAELSYLIQNLTSPIAVQVVKQL----- 229 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 + Y++ TQ N + + L +D A++ NLE+ R + +G ++ +LL +D Sbjct: 230 ---LMYVQVTQKRNLAHMQKAIAYEPSFYLRMDHASKYNLELTRLIRTGKKQGTLLWLLD 286 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T GGRL + + PL IN R + +++ + +Q+ L D+ R Sbjct: 287 ETKTAMGGRLLKQWLDRPLIRKDAINARQSRVQVLLEHFFERSNLQEELTKVYDLERLAG 346 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G +D+ ++ + I ++ + D P A+ +L + + + + + + Sbjct: 347 RVAFGNVNGRDLIQLKTSLLQIPKIRHVLAELDDPV-FDEALTRLDPVSE-IADLIEAAI 404 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 +D P +G ++DG + LDE R K+ IA LQ + + T IKNLKI +N Sbjct: 405 DEDAPISVTEGNVIKDGYNPKLDEYRDAMRNGKKWIADLQAQERQATGIKNLKIGYNKVF 464 Query: 500 GYFIEVTSSS-ASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IEVT ++ ASV + R+ +QT++N RF T EL + E I A + +E Sbjct: 465 GYYIEVTRANLASV------PEGRYERKQTLTNAERFITPELKEKERIILEAEQKSTDLE 518 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 E F+ + I EQ E L N ++ +A +D+ + A++++E + +P + S +K GR Sbjct: 519 YELFKKIRETIKEQIERLQNLAKQVAELDVLQSFAVVSEEYQFVKPTMTESHEIEIKAGR 578 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VEK + QS ++ ND ++ ++ L+TGPNM GKST++RQ AL VIMAQ Sbjct: 579 HPVVEKVMGHQS---YVPNDILMN-----QDTEILLITGPNMSGKSTYMRQLALTVIMAQ 630 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 MG +VPA A + I D++F+R+G+AD+L SG+STFMVEM E L T S ++ DEI Sbjct: 631 MGCFVPAEEATLPIFDQIFTRIGAADDLISGQSTFMVEMQEANRALKDGTANSLILFDEI 690 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGTAT DG+++A + IE++H+ + L +TH+HELT L ++L R N + + + Sbjct: 691 GRGTATYDGMALAQSIIEFIHQNVHAKTLFSTHYHELTALDQTLTRLKNVHVGAVEQDGN 750 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 ++FLHK+ G AD SYGI V KLAG+P+++++RA IL E+L + NQ D Sbjct: 751 LVFLHKMEDGPADKSYGIHVAKLAGMPDSLLARASVIL---EQLENENQGD 798 >gi|168230983|ref|ZP_02656041.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194445735|ref|YP_002042150.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194472834|ref|ZP_03078818.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|238909678|ref|ZP_04653515.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|238693606|sp|B4T436|MUTS_SALNS RecName: Full=DNA mismatch repair protein mutS gi|194404398|gb|ACF64620.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194459198|gb|EDX48037.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205334522|gb|EDZ21286.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 855 Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust. Identities = 307/902 (34%), Positives = 486/902 (53%), Gaps = 73/902 (8%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 +++ + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG Sbjct: 5 FDKDFSNHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASA 64 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G+ IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPG Sbjct: 65 GEPIPMAGIPHHAVENYLAKLVNQGESVAICEQIGDPATSK-----GPVERKVVRIVTPG 119 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPRE 196 T++++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E Sbjct: 120 TISDEALLQERQDNLLAAIWQDGKGYGYATLDISSGRFRLSEPADRETMAAELQRTNPAE 179 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 ++++E AE +L E + ++ I +R T D G F VE Sbjct: 180 LLYAE---DFAEM-ALIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VE 230 Query: 257 KT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 AA + Y+K TQ + P I E Q ++ +D+A R NLEI + L+G E Sbjct: 231 NASRGLCAAGCLLQYVKDTQRTSLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGVE 290 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 +L +D ++T G R+ + P+ ++ + R +I ++ +Q +L+ Sbjct: 291 NTLAAVLDCTVTPMGSRMLKRWLHMPVRNTNILRERQQTIGALQDT---VSELQPVLRQV 347 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP-QS 430 D+ R L+RL + P+D+A +R + LPE L +E + P Q+ Sbjct: 348 GDLERILARLALRTARPRDLARMRHAFQQ------------LPE-LHAQLETVDSAPVQA 394 Query: 431 LEKT----------LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 L K L + D P RDGG + G LDE R+L D + + L++ Sbjct: 395 LRKKMGDFAELRDLLERAIIDAPPVLVRDGGVIAPGYHEELDEWRALADGATDYLDRLEI 454 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 + E T + LK+ +N GY+I+++ + + + ++ RQT+ N R+ EL Sbjct: 455 RERERTGLDTLKVGYNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPEL 508 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 + E+++ + AL +E + ++ L + ++ L ++ +A +D+ + LA A N Sbjct: 509 KEYEDKVLTSKGKALALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLAERAWTLN 568 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 Y P + + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNM Sbjct: 569 YTCPTFTDKPGIRITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNM 619 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GGKST++RQ ALI ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ET Sbjct: 620 GGKSTYMRQTALIALLAYIGSYVPAQNVEIGPIDRIFTRVGAADDLASGRSTFMVEMTET 679 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 A+IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + Sbjct: 680 ANILHNATENSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPE 739 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 ++ N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E Sbjct: 740 KMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELE 799 Query: 841 KLYHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAV 897 + + Q D T+ S + VE ++ L+ D ++P AL+ +Y + Sbjct: 800 SISPNAAATQVD--------GTQMSLLAAPEETSPAVEALENLDPDSLTPRQALEWIYRL 851 Query: 898 KA 899 K+ Sbjct: 852 KS 853 >gi|146299483|ref|YP_001194074.1| DNA mismatch repair protein [Flavobacterium johnsoniae UW101] gi|146153901|gb|ABQ04755.1| DNA mismatch repair protein MutS [Flavobacterium johnsoniae UW101] Length = 855 Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust. Identities = 303/882 (34%), Positives = 492/882 (55%), Gaps = 33/882 (3%) Query: 29 MRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPV 88 M+QY EIK PD+ + +R+GDFYE F +DA+ AS+ LGITLTKRG + + G P Sbjct: 1 MKQYNEIKRKYPDACLLFRVGDFYETFGEDAIRASKILGITLTKRGAGSDTETALAGFPH 60 Query: 89 HTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPT 148 H+ N Y+ KL+K G R+AIC+Q+E P + K++V+R V LVTPG D++L Sbjct: 61 HSINTYLPKLVKAGLRVAICDQLEDP-----KMTKTIVKRGVTELVTPGVSLNDEVLQSK 115 Query: 149 DSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHAE 208 +N+L +V I+++D+STG F + N + + + +P E++ + +E Sbjct: 116 TNNFLASVCFANKNIGISFLDVSTGEFLTAQGNAEYIDKLLQNFNPSEVLVPKN--CKSE 173 Query: 209 YKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI-SYI 267 +K F + + ++ + E+ + ++ ++ FG E +A AI Y+ Sbjct: 174 FKDAFGEDFHSFYLEDWIYKEDYALET-LTKHFQTNSLKGFGVEELKEGIISAGAILYYL 232 Query: 268 KKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGG 327 +TQ I +R + +++D NLE+ + + +LL ID +++ GG Sbjct: 233 SETQHNRVQHITAIQRIAEDAYVWMDRFTIRNLELYHSYN-PNAVTLLDVIDKTLSPMGG 291 Query: 328 RLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGE 387 RL +A PL D+ KI R +++ NP +++ IQ +K D+ R +S++ G+ Sbjct: 292 RLLKRWLALPLKDTNKIKGRHAVVSYLKSNPEILHNIQYQIKQISDLERLISKIAAGKVS 351 Query: 388 PKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFK 447 P++I +++ + + I I L L++ P+E + L + + + L+ D P Sbjct: 352 PREIVYLKESLDAIIPIKTLALES--PQEAVKVIGDSLHSCDLLREKIKTTLNQDAPVAI 409 Query: 448 RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTS 507 G + G + LDE R++ K + ++ + +E T I +LKI NN GY+IEV + Sbjct: 410 SKGNAIATGVNEELDELRAISTSGKEFLEGIERRESERTGISSLKISFNNVFGYYIEVRN 469 Query: 508 SSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSN 567 + KD + + +I +QT+ N R+ T EL + E +I A IE E FE L N Sbjct: 470 TH-----KD-KVPEEWIRKQTLVNAERYITEELKEYETKILGAEEKIHKIESELFEQLVN 523 Query: 568 AIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLK 627 I + + + ++A +D + +A E Y P ID++ +K+GRHP++EK L Sbjct: 524 WIATYIKPVQMNAYLVAQLDCLCSFTQMAVENQYVCPEIDDTFELDIKNGRHPVIEKQLP 583 Query: 628 QQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASY 687 + P+IAND L D+ ++ ++TGPNM GKS LRQ ALIV++AQMGS+VPA Sbjct: 584 VGT--PYIANDVFL----DREKQQIIMITGPNMSGKSAILRQTALIVLLAQMGSFVPADS 637 Query: 688 AHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDG 747 +GIVDK+F+RVG++DN++ G STFMVEM ETASILN +++S V+LDEIGRGT+T DG Sbjct: 638 VRMGIVDKIFTRVGASDNISMGESTFMVEMNETASILNNISDRSLVLLDEIGRGTSTYDG 697 Query: 748 LSIAWATIEYLHE-TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVI 806 +SIAWA E+LHE ++ + L ATH+HEL ++++SL R N + V + + ++F+ K++ Sbjct: 698 ISIAWAIAEFLHEHPSKAKTLFATHYHELNEMTESLPRIQNYNVAVKELKDTVLFVRKLV 757 Query: 807 PGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNNL 866 G + HS+GI V K+AG+P VIS+A +LK EK N L + E + + Sbjct: 758 KGGSAHSFGIHVAKMAGMPQLVISKAQKLLKKLEK----NHSSDALNGIKSANDEMQMSF 813 Query: 867 SKNDKLFVEKIK----CLNLDEMSPLTALKTLYAVKAWTLEK 904 D +E+IK L+++ ++P+ AL L +K ++K Sbjct: 814 FNLDDPLLEEIKEEILSLDINAITPVEALMKLNEIKRMLVKK 855 >gi|332827835|gb|EGK00570.1| DNA mismatch repair protein mutS [Dysgonomonas gadei ATCC BAA-286] Length = 870 Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust. Identities = 297/888 (33%), Positives = 486/888 (54%), Gaps = 42/888 (4%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 + TP+M+QY EIKS +PD+++ +R+GDFYE F DA+ A+ GITLT+R + + + Sbjct: 6 AETPLMKQYFEIKSKHPDAILLFRVGDFYETFSQDAIDAAEITGITLTRRANGSAQFVEL 65 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G P H + Y+ KL++ G R+AIC+Q+E P + K++V+R + LVTPG D Sbjct: 66 AGFPHHALDTYLPKLVRAGKRVAICDQLEDP-----KLTKTIVKRGITELVTPGVSINDN 120 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF--SE 201 +L+ ++N+L AV ++ I+ +DISTG + ++ + + + P+E++ S+ Sbjct: 121 ILNHKENNFLCAVHFAKSSCGISLLDISTGEYLVAEGTKEYVDKLLTNFSPKEVLVERSK 180 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 K+L + + F + F + R+ ++ + FG AA Sbjct: 181 KKLFEEYFGTRF-----FIFELDDWVFTEDTARDRLLKHFETKNLKGFGVEHLTNGVIAA 235 Query: 262 AAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 I Y+ TQ I R + + +D +LE++ T++ +SLL +D Sbjct: 236 GTILHYLDVTQHTQIGHITSLSRIEEDKYVRLDKFTVRSLELISTMNEGG-KSLLDILDR 294 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + + G R+ + PL D+ IN+RL + +F ++ L +++ L D+ R +S+ Sbjct: 295 TTSPMGARMLRRWMVFPLKDAKPINSRLSVVEYFFKDLELKGLLEEQLSLIGDLERIISK 354 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + + R P+++ ++ +++ I FL + P LR EKL P E+ + + Sbjct: 355 VAVNRITPREVVQLKVALKAIEPIREAFLASSEPS-LREIGEKLNPCPIIRER-IEKEIH 412 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D PT G + G +A LDE R + K + +Q + E T I +LKI N+ G Sbjct: 413 PDPPTMLNRGNVINKGVNAELDELRDISYSGKDYLLKIQQRETEATGISSLKISFNSVFG 472 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IEV ++ + + +I +QT+ N R+ T EL D E +I A L +E Sbjct: 473 YYIEVRNAHKDKVPAE------WIRKQTLVNAERYITQELKDYEEKILGAEEKILSLETA 526 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F L +++E ++ + +IA D ++ A +AKE Y RP I+++ +K+GRHP Sbjct: 527 LFNDLVLSLVEYIPTIQVNANLIAQTDCLLSFAKVAKENKYIRPEINDTDALKIKNGRHP 586 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 ++EK L S +I ND L D NS ++ ++TGPNM GKS LRQ ALI +MAQ G Sbjct: 587 VIEKQLPLGES--YITNDVFL----DSNSQQIIIITGPNMAGKSALLRQTALITLMAQAG 640 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA A IG+VDK+F+RVG++DN++ G STFMVEM E A ILN + +S V+ DE+GR Sbjct: 641 SFVPAESAQIGLVDKIFTRVGASDNISLGESTFMVEMNEAADILNNLSPRSLVLFDELGR 700 Query: 741 GTATLDGLSIAWATIEYLHETNRCRG--LLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GT+T DG+SIAWA +EY+HE + + L ATH+HEL ++ KS KR N + V + + Sbjct: 701 GTSTYDGISIAWAIVEYIHEHPKAKAKTLFATHYHELNEMEKSFKRIKNFNVSVKEMDNR 760 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 IIFL K++PG ++HS+GI V K+AG+P +++ RA +ILK E + + + P Sbjct: 761 IIFLRKLVPGGSEHSFGIHVAKMAGMPQSIVKRANNILKQLET----DNRKQGISKPIKD 816 Query: 859 TKESKNN-----LSKNDKLFVE---KIKCLNLDEMSPLTALKTLYAVK 898 KE++ +D + + +IK L+++ ++P+ AL L +K Sbjct: 817 IKENREGYQLSFFQLDDPVLSQVRDEIKSLDVNNLTPMEALNKLNDIK 864 >gi|189030770|sp|A7ZQH3|MUTS_ECO24 RecName: Full=DNA mismatch repair protein mutS Length = 855 Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust. Identities = 313/903 (34%), Positives = 488/903 (54%), Gaps = 73/903 (8%) Query: 17 DLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKH 76 +++++ S TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG Sbjct: 4 NIDKDFSSHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGAS 63 Query: 77 LGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTP 136 G+ IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTP Sbjct: 64 AGEPIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTP 118 Query: 137 GTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPR 195 GT++++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P Sbjct: 119 GTISDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPA 178 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQV 255 E++++E AE SL E + ++ I +R T D G F V Sbjct: 179 ELLYAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-V 229 Query: 256 EKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR 310 E AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G Sbjct: 230 ENAPRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGA 289 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 E +L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ Sbjct: 290 ENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAELQPVLRQ 346 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP-- 428 D+ R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 347 VGDLERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQ 393 Query: 429 ---------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQ 479 L L + D P RDGG + G + LDE R+L D + + L+ Sbjct: 394 ALREKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLE 453 Query: 480 LKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLE 539 ++ E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ E Sbjct: 454 VRERERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPE 507 Query: 540 LIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQ 599 L + E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A Sbjct: 508 LKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTL 567 Query: 600 NYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPN 659 NY P + + +GRHP+VE+ L + PFIAN +LS ++ ++TGPN Sbjct: 568 NYTCPTFIDKPGIRITEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPN 618 Query: 660 MGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIE 719 MGGKST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM E Sbjct: 619 MGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTE 678 Query: 720 TASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLS 779 TA+IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L Sbjct: 679 TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLP 738 Query: 780 KSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF 839 + ++ N L + + I F+H V G A SYG+ V LAG+P VI RA L+ Sbjct: 739 EKMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLREL 798 Query: 840 EKLYHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYA 896 E + + Q D T+ S ++ + VE ++ L+ D ++P AL+ +Y Sbjct: 799 ESISPNAAATQVD--------GTQMSLLSVPEEISPAVEALENLDPDSLTPRQALEWIYR 850 Query: 897 VKA 899 +K+ Sbjct: 851 LKS 853 >gi|82701803|ref|YP_411369.1| DNA mismatch repair protein [Nitrosospira multiformis ATCC 25196] gi|123544947|sp|Q2YB94|MUTS_NITMU RecName: Full=DNA mismatch repair protein mutS gi|82409868|gb|ABB73977.1| DNA mismatch repair protein MutS [Nitrosospira multiformis ATCC 25196] Length = 902 Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust. Identities = 316/926 (34%), Positives = 491/926 (53%), Gaps = 66/926 (7%) Query: 6 SSPQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRC 65 SS +L ++ E L + TPMM+QY+ IK+ +PD L+FYRMGDFYELFFDDA A++ Sbjct: 4 SSKARLSTDPTVFEAVLNNHTPMMQQYLRIKAQHPDMLMFYRMGDFYELFFDDAEKAAKL 63 Query: 66 LGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSL 125 L ITLT+RG G+ I M GVP H A Y+ KL+K+G + ICEQ+ P +K Sbjct: 64 LDITLTRRGTSAGEPIKMAGVPYHAAEQYLAKLVKLGESVVICEQVGDPAT-----SKGP 118 Query: 126 VRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRL 185 V R V R++TPGTLT+ LL + L+A+ + +AW++++ G F + ++ + L Sbjct: 119 VERQVTRIITPGTLTDAALLEDKRDSALLALLVHESTLGLAWLNLAAGQFSVMETSVNNL 178 Query: 186 ISDIMRIDPREIIFSEK-ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNIT 244 +++ R+ P EI+ E L+ + + E L P FD + + ++ + Sbjct: 179 TAELERLKPAEILLPESLNLAGINDRVIQEKL--CVKHLPAWQFDTAAAVRNLSRQFGTH 236 Query: 245 TVDTFGSFS-QVEKTAAAAAISYIKKTQMVNKPTIGY-----PEREDIQSTLFIDSAARS 298 + FG V AA+A + Y + TQ +IG+ ERED + L +D+ R Sbjct: 237 DLSGFGCEDLDVSLGAASALLDYTRLTQ---GASIGHIKGLRVERED--TYLRMDATTRR 291 Query: 299 NLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFI--- 355 NLEI T+ G +LL +D T G RL + PL D I RL+ ++F + Sbjct: 292 NLEISETIRGDAAPTLLSLLDTCSTNMGSRLLCHWLHHPLRDRGLIQNRLNGVSFLMGEA 351 Query: 356 -QNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLK---- 410 P L ++ LK D+ R +R+ + P+D++ +RD ++ + N Sbjct: 352 GSGPCL--SVRDCLKRVTDIERITARIALKSARPRDLSGLRDSLKRLPAVNNAVAGTATT 409 Query: 411 ----NDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRS 466 +D+ + + + +L L L ++ R GG + DG DA LDE R+ Sbjct: 410 SSGGSDVSAHVAALIHSMAP-DNALVALLEKSLKEEPEVMLRTGGVIADGYDAELDELRA 468 Query: 467 LRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHR 526 + + + L+ + T I NLK+++N G++IEVT + + D + R Sbjct: 469 IHNNCDEFLLQLETREKARTGIANLKVEYNRLHGFYIEVTHAHTEKIPDD------YRRR 522 Query: 527 QTMSNLTRFTTLELIDLENRITNATNSAL----LIELESFEILSNAIIEQSESLDNASQV 582 QT+ N R+ T EL E + +A + AL L+ E ++LS I + L ++ Sbjct: 523 QTLKNAERYITPELKAFEEKALSAQSRALEREKLLYGELLDMLSQYI----DHLQQVARS 578 Query: 583 IAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLS 642 +A +D+ A A +Y P+ + + ++ GRHP+VEK + FIAND L Sbjct: 579 VAELDVLATFAERALALDYSLPLFTSDSVIEIQAGRHPVVEKQVDS-----FIANDVQLG 633 Query: 643 CPNDKNSGK--LWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRV 700 + G+ + ++TGPNMGGKST++RQ ALI ++A GS+VPA A IG +D+LF+R+ Sbjct: 634 A---RTGGRRQMLVITGPNMGGKSTYMRQVALIALLAHCGSFVPARSALIGPLDQLFTRI 690 Query: 701 GSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHE 760 G++D+LA GRSTFM+EM E A+IL+ AT QS V++DE+GRGT+T DGL++A+A YL E Sbjct: 691 GASDDLAGGRSTFMMEMTEAANILHNATAQSLVLMDEVGRGTSTFDGLALAFAIARYLLE 750 Query: 761 TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGK 820 NR L ATH+ ELT L++ + N L+ + I+FLH V G A SYG+QV Sbjct: 751 KNRSYTLFATHYFELTRLAEEFAQVANVHLRAVEHKHHIVFLHAVNEGPASQSYGLQVAA 810 Query: 821 LAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE----IQTKESKNNLSKNDKL---- 872 LAG+P+ VI A L E+ NQ L+ + Q + + ++ KND Sbjct: 811 LAGVPDPVIRTARRYLLKLEQEALSNQPQGDLFSRDDLFWKQDRMPEGSVDKNDSAPEHP 870 Query: 873 FVEKIKCLNLDEMSPLTALKTLYAVK 898 + ++ + D++SP AL+ LY +K Sbjct: 871 VLALLRTIVPDDLSPKQALEQLYGLK 896 >gi|282878840|ref|ZP_06287607.1| DNA mismatch repair protein MutS [Prevotella buccalis ATCC 35310] gi|281299048|gb|EFA91450.1| DNA mismatch repair protein MutS [Prevotella buccalis ATCC 35310] Length = 887 Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust. Identities = 302/899 (33%), Positives = 498/899 (55%), Gaps = 46/899 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKD 80 K TPMM+Q+ +K +PD+L+ +R GDFYE + DDA+ SR LGITLTKR G + G + Sbjct: 6 KGLTPMMKQFFSMKRQHPDALLLFRCGDFYETYGDDAIEGSRILGITLTKRNNGGNSG-E 64 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKK--RGNKSL------VRRNVVR 132 M G P H + Y+ KLI+ G R+AIC+Q+E P + ++ +G K L V+R + Sbjct: 65 TAMAGFPHHALDTYLPKLIRAGKRVAICDQLEDPKKKREELKGKKGLSATDKMVKRGITE 124 Query: 133 LVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRI 192 LVTPG D +L+ ++N+L AV + ++++DISTG F +D + + Sbjct: 125 LVTPGVAMGDNVLNYKENNFLAAVHFGKAACGVSFLDISTGEFLTGEGTYDYVEKLLGSF 184 Query: 193 DPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSF 252 P+E+++ + ++ + F T V + VF + S + R+ ++ ++ FG Sbjct: 185 APKEVLYDHN--NKRDFDTHFGTKYCVFELEDWVFTEQS-ARQRLLKHFGTKSLKGFGVE 241 Query: 253 SQVEKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSR 310 A+ AI Y++ TQ N I R + + + +D +LE++ T+ G R Sbjct: 242 QMKSGIVASGAILQYLEITQHTNIGHITSLARIEEERYVRLDKFTIHSLELIDTMQEGGR 301 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 SLL ID +IT GGR+ + PL D T I RLD +++F ++P + + + Sbjct: 302 --SLLNIIDKTITPMGGRMLRRWMVFPLKDVTPIQQRLDVVDYFFKDPDFRQLVGEQFQR 359 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS 430 D+ R +S++ +GR P+++ +++ +++ + +K E LR E+L+ L + Sbjct: 360 IGDLERIISKVAVGRVSPREVVQLKNALQALQPVKAACMKAS-NESLRRIGEQLQ-LCEI 417 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 + + + D P GG + DG D LDE R + K + +Q + E+T I + Sbjct: 418 IRDRIEHEIQPDPPLLVNKGGVIADGYDTELDELRQISRNGKDYLIQIQEREVEQTGIAS 477 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ +NN GY++EV + + KD + + ++ +QT++ R+ T EL E +I A Sbjct: 478 LKVGYNNVFGYYLEVRN-----MYKD-KVPENWVRKQTLAQAERYITEELKAYEEKILGA 531 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 +++E + F L + + + +IA +D + A +A+E Y RP ID + Sbjct: 532 DERIMMLEDKLFRELIVDMQPYIPQIQLDANLIAHLDCLLGFAQVAEENQYVRPQIDATD 591 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 +K GRHP++E L + ++ ND L D ++ ++TGPNM GKS LRQ Sbjct: 592 VLDIKQGRHPVIEMQLP--LGETYVPNDIYL----DTEKQQVMMITGPNMAGKSALLRQT 645 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALIV++AQ+G +VPA A IG+VDK+F+RVG++DN++ G STFMVEM E A+ILN TN+ Sbjct: 646 ALIVLLAQIGCFVPAERAKIGLVDKIFTRVGASDNISLGESTFMVEMTEAANILNNVTNR 705 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRG--LLATHFHELTDLSKSLKRFHNA 788 S V+ DE+GRGT+T DG+SIAWA +EYLHE R R L ATH+HEL ++ K R HN Sbjct: 706 SLVLFDELGRGTSTYDGISIAWAIVEYLHEQPRARARTLFATHYHELNEMEKHFPRIHNY 765 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 + V +++ +IF+ K+ G ++HS+GI V ++AG+P +++ RA ILK E N + Sbjct: 766 NVSVKEADGKVIFMRKLERGGSEHSFGIHVAEIAGMPRSIVKRANAILKQLEA---DNSE 822 Query: 849 DMRLYYPEIQT-KESKNNL-----SKNDKLFVE---KIKCLNLDEMSPLTALKTLYAVK 898 + P ++ +ES+ + +D + + +I L+++ ++P+ AL L +K Sbjct: 823 VGSVGKPSVKRLEESREGMQLSFFQLDDPVLCQVRDEILGLDINNLTPMEALNKLNEIK 881 >gi|170076810|ref|YP_001733448.1| DNA mismatch repair protein MutS [Synechococcus sp. PCC 7002] gi|169884479|gb|ACA98192.1| DNA mismatch repair protein MutS [Synechococcus sp. PCC 7002] Length = 881 Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust. Identities = 297/841 (35%), Positives = 463/841 (55%), Gaps = 47/841 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TPMM+ Y ++K P++++ YR+GDF+E FF DA+ SR L + T + GK +G+ +PM Sbjct: 27 TPMMQHYADLKDKYPNNILLYRVGDFFECFFMDAITVSRELELVCTSKESGKGIGR-VPM 85 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H Y +L++ G+ + IC+Q+E A K +VRR V +++TPGTLT+D Sbjct: 86 TGVPHHALERYSTQLLEKGYGVVICDQVED--AATAHAEKRMVRREVQKVLTPGTLTDDG 143 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD--RLISDIMRIDPREIIFS- 200 +L +NYL AV W +A+ DISTG F +T D L +++R+ P E+++ Sbjct: 144 MLRARQNNYLAAVVIAGNHWGLAYADISTGEF-CTTQAQDLAALNLELLRLQPSEVLYPT 202 Query: 201 -----EKELSHAEYKSLFETLGNVAVAQPNVF---------FDHSISESRIADYYNITTV 246 + + + ++L + ++ P+ F FD + ++ ++ + ++ Sbjct: 203 DAPDLNRLMRPGDRQTLLQN--HLPACLPSDFCYALRSPREFDLNEAKPKLLMTFQWRSL 260 Query: 247 DTFGS-FSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT 305 + G + AA ++Y+++TQ K + I + L +D R NLEI +T Sbjct: 261 EGVGCEHLPLAVRAAGGLLAYVEETQQAYKVPFESLKTYSIDAFLQLDHQTRRNLEITQT 320 Query: 306 L-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPI 364 + GS SLL +D + T GGR + PL D I RLDS+ ++N L I Sbjct: 321 VRDGSFYGSLLWALDVTCTNMGGRALRRWLLQPLLDPKAIAKRLDSVAELVENTNLRQDI 380 Query: 365 QKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKL 424 +++LK D+ R R+ G +D+ + + + + L + P ++ + Sbjct: 381 RQLLKQIYDLERIAGRIGSGSANARDLYALAESLTKLTYLAELATEGRSP-----YLQAV 435 Query: 425 KKLPQSLE---KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLK 481 K P LE + + L D P ++GG +RDG D +LD R + + + +A+L++ Sbjct: 436 KDFPPELEALGQHVLQYLVDSPPIHIKEGGLIRDGVDENLDFLRRSQVEDREWLANLEVT 495 Query: 482 YAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELI 541 E T + LK+ +N GY+I + S A ++ D ++ +QT++N R+ T EL Sbjct: 496 ERERTGVSKLKVGYNKTFGYYISLPRSQAD------KAPDEYLRKQTLANEERYITPELK 549 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 + E+RI A + +E E F L + E ++ + ++ IA +D+ + A A Q Y Sbjct: 550 ERESRILTAKDDICSLEYEIFTTLRAEVAEHTDQIRTTAKAIAALDVLTSFAETAVYQGY 609 Query: 602 CRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNS-GKLWLLTGPNM 660 CRP I ++ GRHP+VEK+L F+ N L +NS L +LTGPN Sbjct: 610 CRPEITTEKTLEIEAGRHPVVEKSL---GMGLFVPNSTYLG--RTQNSYPDLIILTGPNA 664 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GKS +LRQ LI +MAQ+GS+VPA A I I D++F+RVG+ D+LA+G+STFMVEM ET Sbjct: 665 SGKSCYLRQTGLIQLMAQVGSFVPAQSAVIPICDRIFTRVGAVDDLATGQSTFMVEMNET 724 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 A+ILN AT +S V++DEIGRGTAT DGLSIAW+ EYL + + + ATH+HEL +L+ Sbjct: 725 ANILNHATEKSLVLIDEIGRGTATFDGLSIAWSVSEYLATEIKAKTIFATHYHELNELAS 784 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 L+ N + V + E IIFLH+V PG AD SYGI+ G+LAGLP +VI RA ++ E Sbjct: 785 LLENVANYQVTVQEMPEEIIFLHQVRPGGADRSYGIEAGRLAGLPKSVIQRAKQVMTQIE 844 Query: 841 K 841 K Sbjct: 845 K 845 >gi|224584687|ref|YP_002638485.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|254766635|sp|C0PWV2|MUTS_SALPC RecName: Full=DNA mismatch repair protein mutS gi|224469214|gb|ACN47044.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 855 Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust. Identities = 307/902 (34%), Positives = 486/902 (53%), Gaps = 73/902 (8%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 +++ + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG Sbjct: 5 FDKDFSNHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASA 64 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G+ IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPG Sbjct: 65 GEPIPMAGIPHHAVENYLAKLVNQGESVAICEQIGDPATSK-----GPVERKVVRIVTPG 119 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPRE 196 T++++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E Sbjct: 120 TISDEALLQERQDNLLAAIWQDGKGYGYATLDISSGRFRLSEPADRETMAAELQRTNPAE 179 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 ++++E AE +L E + ++ I +R T D G F VE Sbjct: 180 LLYAE---DFAEM-ALIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VE 230 Query: 257 KT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 AA + Y+K TQ + P I E Q ++ +D+A R NLEI + L+G E Sbjct: 231 NASRGLCAAGCLLQYVKDTQRTSLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGVE 290 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 +L +D ++T G R+ + P+ ++ + R +I ++ +Q +L+ Sbjct: 291 NTLAAVLDCTVTPMGSRMLKRWLHMPVRNTDILRERQQTIGALQDT---VSELQPVLRQV 347 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP-QS 430 D+ R L+RL + P+D+A +R + LPE L +E + P Q+ Sbjct: 348 GDLERILARLALRTARPRDLARMRHAFQQ------------LPE-LHAQLETVDSAPVQA 394 Query: 431 LEKT----------LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 L K L + D P RDGG + G LDE R+L D + + L++ Sbjct: 395 LRKKMGDFAEPRDLLERAIIDAPPVLVRDGGVIAPGYHEELDEWRALADGATDYLDRLEI 454 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 + E T + LK+ +N GY+I+++ + + + ++ RQT+ N R+ EL Sbjct: 455 RERERTGLDTLKVGYNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPEL 508 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 + E+++ + AL +E + ++ L + ++ L ++ +A +D+ + LA A N Sbjct: 509 KEYEDKVLTSKGKALALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLAERAWTLN 568 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 Y P + + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNM Sbjct: 569 YTCPTFTDKPGIRITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNM 619 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GGKST++RQ ALI ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ET Sbjct: 620 GGKSTYMRQTALIALLAYIGSYVPAQNVEIGPIDRIFTRVGAADDLASGRSTFMVEMTET 679 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 A+IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + Sbjct: 680 ANILHNATENSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPE 739 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 ++ N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E Sbjct: 740 KMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELE 799 Query: 841 KLYHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAV 897 + + Q D T+ S + VE ++ L+ D ++P AL+ +Y + Sbjct: 800 SISPNAAATQVD--------GTQMSLLAAPEETSPAVEALENLDPDSLTPRQALEWIYRL 851 Query: 898 KA 899 K+ Sbjct: 852 KS 853 >gi|163783941|ref|ZP_02178911.1| DNA mismatch repair protein [Hydrogenivirga sp. 128-5-R1-1] gi|159880792|gb|EDP74326.1| DNA mismatch repair protein [Hydrogenivirga sp. 128-5-R1-1] Length = 868 Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust. Identities = 309/915 (33%), Positives = 510/915 (55%), Gaps = 90/915 (9%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD-- 80 + TPM+ QY +IK+ P+ L+ YR+GDFYELF++DA + +R L I LTK K +GKD Sbjct: 3 QKETPMVAQYNKIKAKYPEELLLYRLGDFYELFYEDAHIGARELNIALTK--KKVGKDKY 60 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCG+P H+A+ YI +L+ G+++AICEQ+E AK +V+R+V+R++TPGT Sbjct: 61 IPMCGIPYHSADSYITRLVAKGYKVAICEQLEDASTAK-----GIVKRDVIRVITPGTFF 115 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 E++ L LMAV +IR +A++++D+STG F + N D L+S I + P+EI+ Sbjct: 116 ENEKLKSA----LMAVDKIRNRYAVSYLDLSTGDFIGTLLNKDELLSFIGKFQPKEILIR 171 Query: 201 ---EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 +K + +K +F + P+ FF+ SE+ + Y+ + +FG F++ E+ Sbjct: 172 PEFDKSVIEENFKHIFFS------TIPDDFFE---SENELYSYFKVLDFQSFG-FTKKEE 221 Query: 258 TA---AAAAISYIKKTQ-----MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS 309 +A Y K TQ + KP+ P REDI L D +A+ +LE++ + G+ Sbjct: 222 PVIKPVSAVFKYAKHTQKSFLPFIKKPS---PYREDIYMRL--DYSAQKHLELVHSNEGN 276 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 +L I+ ++TG G R + PL + KI R +++ I+ L N +++ILK Sbjct: 277 --VALFNVINKTLTGMGKRKLRFFLLHPLKNKEKIIERQNAVEELIKKSELRNQLREILK 334 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 D+ R +S++ P+D+ +R+ ++ N+ + K + L+ +++ Sbjct: 335 DIFDIERLVSKISSNTLNPRDMVALRESLKKSQNLKSYENKVN-STYLKSIFSQIEDFEY 393 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 ++K L L D+ P ++G ++ G + LDE + ++++ + + Q K + T I Sbjct: 394 LVDK-LDRYLEDNPPIHLKEGKLIKKGINPYLDELKEIKEKGNKWVKEFQEKERQATGIA 452 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 +LK+ N +GY+IE+T + + + RQT+SN RFTT EL E +I + Sbjct: 453 SLKVGFNKVMGYYIEITKPNLKFVP------PHYKRRQTLSNAERFTTEELQSFEEKILS 506 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 A +E E F L + S+ + + I +D ++LA LA E+ + +P I Sbjct: 507 ADEKIKALEYEIFMNLREEVSLISDIIAKTASAIGELDAVLSLAQLAVEKGWIKPEIIEG 566 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 +++G HP++ + F+ N + D+NS ++TGPNM GKSTF+RQ Sbjct: 567 KELYIEEGVHPVI-----ANYNPDFVPNSLKM----DENS-YFHIITGPNMAGKSTFIRQ 616 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 +A++VI++ +GS++PA A I + D +F+R+GSAD LA G STFMVEM+E ++I++ AT Sbjct: 617 SAILVILSHIGSFIPARKAVIPVFDGVFTRIGSADALAKGLSTFMVEMLEMSNIVSNATK 676 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 SFV+LDE+GRGT+T DGLS+AWA EYL + + + L ATH+HELT L + L + N Sbjct: 677 NSFVVLDEVGRGTSTYDGLSLAWAISEYLVKNVKAKTLFATHYHELTQLEEELPQVKNYH 736 Query: 790 LQV-SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 + + + ++ I F ++V+ G + SYGI V KLAG+ + +I RAY+IL+ FE H + Sbjct: 737 MHIYEEGDKDIKFTYRVLEGFTNKSYGIHVAKLAGIKDEIIERAYEILEKFEN--SHELE 794 Query: 849 DM----------------RLYYPE--------IQTKESKNNLSKNDKLFVEKIKCLNLDE 884 D+ + Y PE +QT E +N K +E++K L++ Sbjct: 795 DIFQVENKEFPKVLRQPKQEYKPEEELPIFKQLQTIEQENAY----KEIIEQLKSLDIAN 850 Query: 885 MSPLTALKTLYAVKA 899 ++PL AL L +K+ Sbjct: 851 LTPLQALNILNEIKS 865 >gi|300946988|ref|ZP_07161214.1| DNA mismatch repair protein MutS [Escherichia coli MS 116-1] gi|301645284|ref|ZP_07245235.1| DNA mismatch repair protein MutS [Escherichia coli MS 146-1] gi|300453375|gb|EFK16995.1| DNA mismatch repair protein MutS [Escherichia coli MS 116-1] gi|301076449|gb|EFK91255.1| DNA mismatch repair protein MutS [Escherichia coli MS 146-1] Length = 853 Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust. Identities = 313/900 (34%), Positives = 484/900 (53%), Gaps = 73/900 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+ +K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLRLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAGLQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFIDKPGIRITEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM +TA+ Sbjct: 620 KSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTKTAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 740 EGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 799 Query: 843 YHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + Q D T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 800 SPNAAATQVD--------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|312959254|ref|ZP_07773772.1| DNA mismatch repair protein [Pseudomonas fluorescens WH6] gi|311286514|gb|EFQ65077.1| DNA mismatch repair protein [Pseudomonas fluorescens WH6] Length = 867 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 311/892 (34%), Positives = 480/892 (53%), Gaps = 48/892 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L S TPMM+QY +K+ +PD L+FYRMGDFYE+F++DA A++ L ITLT RG+ G+ Sbjct: 7 DLSSHTPMMQQYWRLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQA 66 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCG+P H+ Y+ KL+K+G + ICEQI P +K V R VVR++TPGT++ Sbjct: 67 IPMCGIPYHSLEGYLVKLVKLGESVVICEQIGDPAT-----SKGPVERQVVRIITPGTVS 121 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIF 199 ++ LL N + AV + ++ +DI++G F + + L++++ RI+P E++ Sbjct: 122 DEALLDERRDNLIAAVLGDERLFGLSVLDITSGNFSVLEIKGWENLLAELERINPVELLI 181 Query: 200 SE---KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 + K+L + + G A + F+ + + +++ + FG + Sbjct: 182 PDDWPKDLPAEKRR------GTKRRAPWD--FERDSALKSLCQQFSVQDLKGFGCETLTL 233 Query: 257 KTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA + SY K+TQ P + E + T+ +D A+R NLE+ LSG R+ Sbjct: 234 AIGAAGCLLSYAKETQRTALPHLRSLRHERLDDTVVLDGASRRNLELDTNLSGGRDNXXX 293 Query: 316 KTIDYSIT----GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 G RL + PL D T + R SI + +Q LK Sbjct: 294 XXXXXXXXXXXPAMGSRLLTRWLNRPLRDLTVLQARQTSITCLLDG-YRFEKLQPQLKEI 352 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQ 429 D+ R L+R+ + P+D+A +RD + + + + D P ++L +L Sbjct: 353 GDIERILARIGLRNARPRDLARLRDALGALPQLQVAMTELDTPHLQQLAVTAGTYPELAA 412 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 LEK + D+ P RDGG L+ G D+ LDE +SL + + + + L+ + T + Sbjct: 413 LLEKAII----DNPPAIIRDGGVLKTGYDSELDELQSLSENAGQFLIDLEAREKARTGLA 468 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 NLK+ +N GYFIE+ S A D + RQT+ RF T EL E++ + Sbjct: 469 NLKVGYNRVHGYFIELPSKQAESAPID------YQRRQTLKGAERFITPELKAFEDKALS 522 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 A + AL E +E L +I Q L + + +A +D+ LA A + P + Sbjct: 523 AKSRALAREKMLYEALLEDLISQLAPLQDTAAALAELDVLSNLAERALNLDLNCPRFVSE 582 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 + GRHP+VE+ L + PF+AND L + ++ ++TGPNMGGKST++RQ Sbjct: 583 PCMRIVQGRHPVVEQVL----TTPFVANDLSLD-----DDTRMLVITGPNMGGKSTYMRQ 633 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALIV++A +GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT Sbjct: 634 TALIVLLAHIGSFVPAASCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATE 693 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 +S V++DE+GRGT+T DGLS+AWA E L R L ATH+ ELT L +S N Sbjct: 694 RSLVLMDEVGRGTSTFDGLSLAWAAAERLAHL-RAYTLFATHYFELTVLPESEPLVANVH 752 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--KLYHHNQ 847 L ++ NE I+FLH V+PG A SYG+ V +LAG+PN VI RA + L E L H Sbjct: 753 LNATEHNERIVFLHHVLPGPASQSYGLAVAQLAGVPNDVILRAREHLSRLETTALPHETV 812 Query: 848 KDMRLYYPEIQTKESKNNLSKN-DKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +++L + ++++ L+LD+++P AL+ LYA+K Sbjct: 813 VASPAKAARKPAAPHQSDLFASLPHPVLDELAKLDLDDLTPRKALEMLYALK 864 >gi|172087862|emb|CAQ35087.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus] gi|172087874|emb|CAQ35093.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus] Length = 872 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 317/910 (34%), Positives = 492/910 (54%), Gaps = 83/910 (9%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPMM+QY++IKS D L+F+R+GDFYE+F++DA ASR L ITLTKR I Sbjct: 1 MSNVTPMMQQYLKIKSEYQDCLLFFRLGDFYEMFYEDAKEASRVLEITLTKRDAKKENPI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A+ YI L+ G+++AICEQ+E P + K +VRR VVR+VTPGT+ E Sbjct: 61 PMCGVPYHSADSYIDTLVNNGYKVAICEQMEDP-----KQTKGMVRREVVRIVTPGTVME 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD-RLISDIMRIDPREIIFS 200 + +NY+++ + E A+++ D+STG K++ N + L+++I I+P E++ + Sbjct: 116 QGGVDDKQNNYILSFVMNQPEIALSYCDVSTGELKVTHFNDEATLLNEITTINPNEVVIN 175 Query: 201 EKELSHAEYK--SLFETLGNVAVAQPNVF----FDHSI---SESRIADYYNITTVDTFGS 251 + H + + + ET+ P ++ +H + + + DY + T Sbjct: 176 DNISDHLKRQINMVTETITVRETLSPEIYSVNQTEHKLMFQATQLLLDYIHHTQK---RD 232 Query: 252 FSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSR 310 S +E AAI Y+K +D A+ NLE+ ++ S+ Sbjct: 233 LSHIEDVVQYAAIDYMK-----------------------MDFYAKRNLELTESIRLKSK 269 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 + +LL +D + T G R + I PL +I RLD ++ F + I + ++ L Sbjct: 270 KGTLLWLMDETKTPMGARRLKQWIDRPLISKEQIEARLDIVDEFSAHFIERDTLRTYLNQ 329 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS 430 D+ R + R+ G +D+ ++ I NI L N + ++ V +L+ L Sbjct: 330 VYDIERLVGRVSYGNVNARDLIQLKHSISEIPNIKALL--NSMNQDTLVQVNQLEPLDDL 387 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L+ L L ++ P +DGG + G + LDE K +A LQ K + T IK+ Sbjct: 388 LD-ILEQSLVEEPPISVKDGGLFKVGFNMQLDEYLEASKNGKTWLAELQAKERQRTGIKS 446 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LKI N GYFIE+T ++ L+ S+ ++ +QT+SN RF T EL + E+ I A Sbjct: 447 LKISFNKVFGYFIEITRAN---LQNFEPSEFGYMRKQTLSNAERFITDELKEKEDIILGA 503 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 + A+ +E + F L + + +E L +++I+ +D + A +A++ NY RP + Sbjct: 504 EDKAIELEYQLFVQLREEVKKYTERLQQQAKIISELDCLQSFAEIAQKYNYTRPSFSENK 563 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 + + RHP+VE+ + ++ N+C L N ++L+TGPNM GKST++RQ Sbjct: 564 TLELVESRHPVVERVM---DYNDYVPNNCRLD-----NETFIYLITGPNMSGKSTYMRQV 615 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 A+I IMAQMG+YVP A + I D++F+R+G+AD+L SG+STFMVEM+E L AT Sbjct: 616 AIISIMAQMGAYVPCKEAVLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTYATED 675 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S +I DEIGRGT+T DGL++A A IEY+ ET+ + L +TH+HELT L ++L N + Sbjct: 676 SLIIFDEIGRGTSTYDGLALAQAMIEYVAETSHAKTLFSTHYHELTTLDQALPSLKNVHV 735 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE---------- 840 ++ +IFLHKV G D SYGIQV KLA LP VISRA IL FE Sbjct: 736 AANEYKGELIFLHKVKDGAVDDSYGIQVAKLADLPEKVISRAQVILSEFEASADKKSSIS 795 Query: 841 --KLYHHNQKDMRLYYPEIQTKESKNNLSKND------KLF-------VE-KIKCLNLDE 884 K+ N+ ++ + +E+ + LS+ D LF +E +IK LNL Sbjct: 796 NLKMV-ENEPEINQENSNLSVEETTDTLSQKDFEQASFDLFENDQESEIELQIKNLNLSN 854 Query: 885 MSPLTALKTL 894 M+P+ AL L Sbjct: 855 MTPIEALVKL 864 >gi|30249667|ref|NP_841737.1| DNA mismatch repair protein [Nitrosomonas europaea ATCC 19718] gi|44888191|sp|Q82U08|MUTS_NITEU RecName: Full=DNA mismatch repair protein mutS gi|30180704|emb|CAD85616.1| mutS; DNA mismatch repair protein [Nitrosomonas europaea ATCC 19718] Length = 873 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 306/895 (34%), Positives = 477/895 (53%), Gaps = 54/895 (6%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S TPMM+QY+ IK+ + D L+FYRMGDFYELF++DA A++ L ITLT+RG G+ I M Sbjct: 8 SHTPMMQQYLRIKAQHTDKLLFYRMGDFYELFYEDAEKAAKLLDITLTQRGSSAGEPIKM 67 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H A+ Y+ +L+++G IAICEQ P +K V R V+R++TPGTLT+ Sbjct: 68 AGVPFHAADQYLARLVRLGESIAICEQTGDPAT-----SKGPVERQVIRILTPGTLTDAG 122 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 LL ++ ++A+A R +AW++++ G ++ ++ D L S++ R+ P EI+ E Sbjct: 123 LLEERSNSIVLALALHRGSIGLAWLNLAAGDMRVLETSSDNLTSELERLHPAEILLPES- 181 Query: 204 LSHAEYKSLFETLGNVAVAQ--PNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAA 260 L TL N A + P+ FD+ + ++ + ++ FG AA Sbjct: 182 ------LDLPATLNNFAGPKRLPDWQFDYEHAMQQLTRQFGTRDLNAFGCEDLHAAIMAA 235 Query: 261 AAAISYIKKTQMV--NKPTIGYP--------EREDIQSTLFIDSAARSNLEILRTLSGSR 310 A Y++ TQ + + P ER+D + L +D+A R NLEI TL G Sbjct: 236 GALFEYVRLTQQTATDGSSGQLPGHLHTLQVERQD--AYLRMDAATRRNLEITLTLRGED 293 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFI--QNPILINPIQKIL 368 +L +D TG G RL + PL + + RLD+++ I Q L I++ Sbjct: 294 APTLSSLLDTCSTGMGSRLLRHWLHHPLRNRITLQQRLDTVSDLIGAQPETLYAGIRQQF 353 Query: 369 KSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP 428 K D+ R SR+ + P+D++ +RD + I+ L + AV + P Sbjct: 354 KHIADIERITSRIALRTARPRDLSGLRDSLMRLPGIIELIATSAA-----AAVHRFIP-P 407 Query: 429 QSLEKTLSSMLSDDLPTFK----RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAE 484 + L+ +L L R+GG + DG DA LDE R L+ + L+ + E Sbjct: 408 MQPDPLLTQLLVRALQPVPGAVIREGGVIADGFDAELDELRGLQGNCDEFLLQLEARERE 467 Query: 485 ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLE 544 T I NLK+++N G++IEVT + + D + RQT+ N R+ EL E Sbjct: 468 RTGIPNLKVEYNRVHGFYIEVTRAQGEKIPPD------YRRRQTLKNAERYIIPELQAFE 521 Query: 545 NRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP 604 ++ +A AL E +E L + + L ++ +A +D+ A A A Y +P Sbjct: 522 HKTLSAREQALAREKMLYERLLEQLADFIIPLQEIARSVAELDVLCAFAERAALSGYTKP 581 Query: 605 IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 + + I++ GRHP+VE ++ +IAND L +N ++ ++TGPNMGGKS Sbjct: 582 VFTDDPVLIIEAGRHPVVENQVEH-----YIANDVQLGAITRENR-QMLVITGPNMGGKS 635 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 T++RQ AL V++A GS+VPA A IG +D++F+R+G+AD+LA GRSTFMVEM E A IL Sbjct: 636 TYMRQTALTVLLAHCGSFVPAQIARIGPIDQIFTRIGAADDLAGGRSTFMVEMTEAAGIL 695 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR 784 AT QS V++DEIGRGT+T DGL++A+A +L N+ L ATH+ ELT L++ + Sbjct: 696 RNATAQSLVLVDEIGRGTSTFDGLALAFAIARHLLTQNQSYTLFATHYFELTRLAEEFPQ 755 Query: 785 FHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYH 844 N + + I+FLH++ G A SYG+ V LAG+P+ VI A IL E+ Sbjct: 756 AVNIHVTAVEHKRRIVFLHRIEEGPASRSYGLHVAALAGVPDRVIRNAAKILARLEQETL 815 Query: 845 HNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 L+ +E+ + + ++ ++ ++ DE++P AL+ LY +K+ Sbjct: 816 SRSPQQTLFE---TVEENAKAVPASVHPVLDYLERIHPDELTPRGALEQLYLIKS 867 >gi|7404405|sp|P73769|MUTS_SYNY3 RecName: Full=DNA mismatch repair protein mutS Length = 878 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 294/837 (35%), Positives = 466/837 (55%), Gaps = 43/837 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TPM + Y E+K +L+ YR+GDF+E FF DA++ +R L + LT + GK +G+ + M Sbjct: 26 TPMFQHYTEVKEQYQGALLLYRVGDFFECFFQDAVIIARELELILTSKEGGKEIGR-VAM 84 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H + Y ++L++ G+ +AIC+Q+E EA+ K +V R V +L+TPGTLT+D Sbjct: 85 TGVPHHALDRYARQLVEKGYAVAICDQVEDAAEAQ--AEKRMVERQVTKLLTPGTLTDDS 142 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEK 202 +L +N+L A+A + +W +A DISTG F +SN D L +++R+ P E++ Sbjct: 143 MLPAKRNNFLAAIAMVEDKWGLAHADISTGEFFTCQSSNLDDLAVELLRLQPSEVLIPT- 201 Query: 203 ELSHAEYKSLF---ETLGNVAVAQPNVF---------FDHSISESRIADYYNITTVDTFG 250 S + +++ E ++ P F F ++ R+ + + +++ G Sbjct: 202 --SAPDIRNILRPGEPSEHIPKQLPTSFCYSLRSQAPFSLVEAKQRLLTTFRVKSLEGMG 259 Query: 251 SFS-QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SG 308 + AA + YI+ TQ + I + + L +D R NLEI +T+ G Sbjct: 260 CEGLPLAIRAAGGLLEYIEDTQKAHVVPIQPLKTYGLTDFLVLDHQTRRNLEINQTVRDG 319 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKIL 368 S SLL +D + T G R + PL D I R D+I +P L ++++L Sbjct: 320 SFHGSLLWALDRTSTTMGSRALRRWLLQPLLDLKGIQARQDTIQELYHHPALRQDLRQLL 379 Query: 369 KSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP 428 + D+ R R+ +D+ + + ++ L + P ++ L+ +P Sbjct: 380 RQIYDLERLTGRIGANTASARDVYGLASSLVRLTDLAELAQEGHSP-----YLKALQTVP 434 Query: 429 QSLE---KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE 485 LE K + + + ++ P R+G +R G + +LDE R + + +A+L++ E+ Sbjct: 435 PELEELGKYVLAHIVENPPLHIREGNLIRSGVNPTLDEMRQSLEDDNQWLANLEVTEREK 494 Query: 486 TKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 T I NLK+ +N GY++ + S K ++ D +I +QT+ N R+ T EL + E Sbjct: 495 TGIANLKVGYNKAFGYYLSLPRS------KSEQAPDNYIRKQTLVNEERYITPELKERET 548 Query: 546 RITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPI 605 RI A +E E F + + E+++ + + ++ +A ID+ LA +A Q YCRPI Sbjct: 549 RILTAQADLNQLEYEIFTEVRATVAEKAQPIRDVAKAVAAIDVLAGLAEVAVYQGYCRPI 608 Query: 606 IDNSTNFI-VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 + I ++ GRHP+VE++L + F+AND L +D L +LTGPN GKS Sbjct: 609 MQMEPGLIDIEAGRHPVVEQSL---GAGFFVANDTQLG--HDHWHPDLVILTGPNASGKS 663 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 +LRQ LI +MAQ GS++PA A + I D++F+RVG+ D+LA+G+STFMVEM ETA+IL Sbjct: 664 CYLRQVGLIQLMAQTGSFIPAKTATLSICDRIFTRVGAVDDLATGQSTFMVEMNETANIL 723 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR 784 N AT +S V+LDEIGRGTAT DGL+IAW+ EYL + R + ATH+HEL +L+ L+ Sbjct: 724 NHATAKSLVLLDEIGRGTATFDGLAIAWSVAEYLAGEIQARTIFATHYHELNELASLLEN 783 Query: 785 FHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 N + V + E IIFLH+V PG AD SYGI+ G+LAGLP++VI+RA ++ EK Sbjct: 784 VANFQVTVKELPEEIIFLHQVTPGGADKSYGIEAGRLAGLPSSVITRARQVMAQIEK 840 >gi|319401416|gb|EFV89626.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis FRI909] Length = 873 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 318/905 (35%), Positives = 485/905 (53%), Gaps = 86/905 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY++IKS D L+F+R+GDFYE+FFDDA ASR L ITLTKR IPMCG Sbjct: 5 TPMMQQYLKIKSEYDDCLLFFRLGDFYEMFFDDAKEASRVLEITLTKRDAKKENPIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A++YI+ LI G+++AICEQ+E P + K +VRR VVR+VTPGT+ + + Sbjct: 65 VPYHSADNYIETLINNGYKVAICEQMEDP-----KQTKGMVRREVVRIVTPGTVMDQSGM 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204 +NY+++ E+ + + D+STG K++ + L+++I I+P EI+ + L Sbjct: 120 DEKKNNYILSFIE-NEEFGLCYCDVSTGELKVTHFKDTATLLNEITTINPNEIVIKQA-L 177 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISE----------SRIADYYNITTVDTFGSFSQ 254 S + + + V + D+ +++ + DY + T S Sbjct: 178 SEELKRQINRITETITVREDISDEDYDMNQLTHQLMHDTTQLLLDYIHHTQK---RDLSH 234 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQS 313 +E+ AA+ Y+K +D A+ NLE+ ++ S++ + Sbjct: 235 IEEVIEYAAVDYMK-----------------------MDYYAKRNLELTESIRLKSKKGT 271 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T G R + I PL + +IN RL+ + F+ I + ++ L D Sbjct: 272 LLWLMDETKTPMGARRLKQWIDRPLINKQQINDRLNIVEEFMDRFIERDTLRNHLNQVYD 331 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R + R+ G +D+ ++ I +I L N+L + ++L+ L L+ Sbjct: 332 IERLVGRVSYGNVNARDLIQLKHSISEIPHIKALL--NELDAQTTTQFKELEPLDDLLQ- 388 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L L ++ P +DGG + G + LDE K +A LQ K E T IK+LKI Sbjct: 389 ILEESLVEEPPISIKDGGLFKKGFNTQLDEYLEASKNGKTWLAELQAKERERTGIKSLKI 448 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GYFIE+T ++ + + + DR +QT+SN RF T EL + E+ I A + Sbjct: 449 SFNKVFGYFIEITRANLNNFQPEAFGYDR---KQTLSNAERFITDELKEKEDIILGAEDK 505 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 A+ +E E F L I +E L +++I+ +D + A +A++ NY +P + Sbjct: 506 AVELEYELFVKLREHIKTYTERLQKQAKIISELDCLQSFAEIAQKYNYVKPTFSDDKVLH 565 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +++ RHP+VE+ + ++ NDC L + ++L+TGPNM GKST++RQ A+I Sbjct: 566 LENSRHPVVERVMDHND---YVPNDCHLD-----DETFIYLITGPNMSGKSTYMRQVAII 617 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 IMAQMG+YVP A + I D++F+R+G+AD+L SG+STFMVEM+E L AT S + Sbjct: 618 SIMAQMGAYVPCDSATLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTYATENSLI 677 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 I DEIGRGT+T DGL++A A IEY+ +T+ + L +TH+HELT L + L N + + Sbjct: 678 IFDEIGRGTSTYDGLALAQAMIEYVAQTSHAKTLFSTHYHELTSLDQMLNCLKNVHVAAN 737 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE-----KLYHHNQK 848 + +IFLHKV G D SYGIQV KLA LPN VI RA IL FE +L H + Sbjct: 738 EYQGELIFLHKVKDGAVDDSYGIQVAKLADLPNEVIDRAQVILNAFEQKPSYQLSHQDTD 797 Query: 849 DMRLY--YPE----------IQTKESKNNLSK---------NDKLFVE-KIKCLNLDEMS 886 D R Y + I+T S +N + N + VE +I+ LNL M+ Sbjct: 798 DQRTVPSYNDYGRIEEEQSVIETHTSNHNYEQATFDLFDGYNQQSEVECQIRELNLSNMT 857 Query: 887 PLTAL 891 PL AL Sbjct: 858 PLEAL 862 >gi|293366740|ref|ZP_06613416.1| DNA mismatch repair protein HexA [Staphylococcus epidermidis M23864:W2(grey)] gi|291319041|gb|EFE59411.1| DNA mismatch repair protein HexA [Staphylococcus epidermidis M23864:W2(grey)] Length = 877 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 318/905 (35%), Positives = 488/905 (53%), Gaps = 86/905 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY++IKS D L+F+R+GDFYE+FFDDA ASR L ITLTKR IPMCG Sbjct: 9 TPMMQQYLKIKSEYDDCLLFFRLGDFYEMFFDDAKEASRVLEITLTKRDAKKENPIPMCG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A++YI+ LI G+++AICEQ+E P + K +VRR VVR++TPGT+ + + Sbjct: 69 VPYHSADNYIETLINNGYKVAICEQMEDP-----KQTKGMVRREVVRIITPGTVMDQNGM 123 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204 +NY+++ E+ + + D+STG K++ + L+++I I+P EI+ + L Sbjct: 124 DEKKNNYILSFIE-NEEFGLCYCDVSTGELKVTHFKDTATLLNEITTINPNEIVIKQA-L 181 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISE----------SRIADYYNITTVDTFGSFSQ 254 S + + + V + D+ +++ + DY + T S Sbjct: 182 SEELKRQINMITETITVREDISDEDYDMNQLTHQLMHDTTQLLLDYIHHTQK---RDLSH 238 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQS 313 +E+ AA+ Y+K +D A+ NLE+ ++ S++ + Sbjct: 239 IEEVIEYAAVDYMK-----------------------MDYYAKRNLELTESIRLKSKKGT 275 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T G R + I PL + +IN RL+ + F+ I + ++ L D Sbjct: 276 LLWLMDETKTPMGARRLKQWIDRPLINKQQINDRLNIVEEFMDRFIERDTLRNHLNQVYD 335 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R + R+ G +D+ ++ I +I L N+L + ++L+ L L+ Sbjct: 336 IERLVGRVSYGNVNARDLIQLKHSISEIPHIKALL--NELGAQTTTQFKELEPLDDLLQ- 392 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L L ++ P +DGG ++G +A LDE K +A LQ K E T IK+LKI Sbjct: 393 ILEESLVEEPPISIKDGGLFKNGFNAQLDEYLEASKNGKTWLAELQAKERERTGIKSLKI 452 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GYFIE+T ++ + + + +R +QT+SN RF T EL + E+ I A + Sbjct: 453 SFNKVFGYFIEITRANLNNFQPEAFGYNR---KQTLSNAERFITDELKEKEDIILGAEDK 509 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 A+ +E E F L I +E L +++I+ +D + A +A++ NY +P + Sbjct: 510 AVELEYELFVKLREHIKTYTERLQKQAKIISELDCLQSFAEIAQKYNYVKPTFSDDKVLH 569 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +++ RHP+VE+ + ++ NDC L + ++L+TGPNM GKST++RQ A+I Sbjct: 570 LENSRHPVVERVM---DYNDYVPNDCHLD-----DETFIYLITGPNMSGKSTYMRQVAII 621 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 IMAQMG+YVP A + I D++F+R+G+AD+L SG+STFMVEM+E L AT S + Sbjct: 622 SIMAQMGAYVPCDSATLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTYATENSLI 681 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 I DEIGRGT+T DGL++A A IEY+ +T+ + L +TH+HELT L + LK N + + Sbjct: 682 IFDEIGRGTSTYDGLALAQAMIEYVAQTSHAKTLFSTHYHELTSLDQMLKCLKNVHVAAN 741 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE-----KLYHHNQK 848 + +IFLHKV G D SYGIQV KLA LPN VI RA IL FE +L H N Sbjct: 742 EYQGELIFLHKVKDGAVDDSYGIQVAKLADLPNEVIDRAQVILNAFEQKPSYQLSHENTD 801 Query: 849 DMRLY--YPE----------IQTKESKNNLSK---------NDKLFVE-KIKCLNLDEMS 886 D + Y + I+T S +N + N + VE +I+ LNL M+ Sbjct: 802 DQQTVPSYNDFGRTEEEQSVIETHTSNHNYEQATFDLFDGYNQQSEVECQIRELNLSNMT 861 Query: 887 PLTAL 891 PL AL Sbjct: 862 PLEAL 866 >gi|16761683|ref|NP_457300.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16766215|ref|NP_461830.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29143167|ref|NP_806509.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62181411|ref|YP_217828.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167550240|ref|ZP_02343997.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167993148|ref|ZP_02574243.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168242649|ref|ZP_02667581.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168463951|ref|ZP_02697868.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194449728|ref|YP_002046867.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197249260|ref|YP_002147804.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262020|ref|ZP_03162094.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205353850|ref|YP_002227651.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|213854165|ref|ZP_03382697.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|60392808|sp|P0A1Y0|MUTS_SALTY RecName: Full=DNA mismatch repair protein mutS gi|60392809|sp|P0A1Y1|MUTS_SALTI RecName: Full=DNA mismatch repair protein mutS gi|75505595|sp|Q57KL5|MUTS_SALCH RecName: Full=DNA mismatch repair protein mutS gi|189083209|sp|A9N1F8|MUTS_SALPB RecName: Full=DNA mismatch repair protein mutS gi|238690039|sp|B5F3Y8|MUTS_SALA4 RecName: Full=DNA mismatch repair protein mutS gi|238690514|sp|B5RDN2|MUTS_SALG2 RecName: Full=DNA mismatch repair protein mutS gi|238690637|sp|B4TFU6|MUTS_SALHS RecName: Full=DNA mismatch repair protein mutS gi|25317169|pir||AH0853 DNA mismatch repair protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16421457|gb|AAL21789.1| methyl-directed mismatch repair [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16503984|emb|CAD06015.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29138800|gb|AAO70369.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62129044|gb|AAX66747.1| methyl-directed mismatch repair, recognize exocyclic adducts of guanosine [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194408032|gb|ACF68251.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195633763|gb|EDX52177.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197212963|gb|ACH50360.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240275|gb|EDY22895.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205273631|emb|CAR38620.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205324663|gb|EDZ12502.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328749|gb|EDZ15513.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205338197|gb|EDZ24961.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|267995039|gb|ACY89924.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|312913927|dbj|BAJ37901.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225585|gb|EFX50639.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322624527|gb|EFY21360.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628858|gb|EFY25641.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633415|gb|EFY30157.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322664493|gb|EFY60687.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322673762|gb|EFY69863.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677823|gb|EFY73886.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681347|gb|EFY77379.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322715895|gb|EFZ07466.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323131261|gb|ADX18691.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323221150|gb|EGA05581.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226375|gb|EGA10583.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|326628960|gb|EGE35303.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332989781|gb|AEF08764.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 855 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 307/902 (34%), Positives = 486/902 (53%), Gaps = 73/902 (8%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 +++ + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG Sbjct: 5 FDKDFSNHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASA 64 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G+ IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPG Sbjct: 65 GEPIPMAGIPHHAVENYLAKLVNQGESVAICEQIGDPATSK-----GPVERKVVRIVTPG 119 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPRE 196 T++++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E Sbjct: 120 TISDEALLQERQDNLLAAIWQDGKGYGYATLDISSGRFRLSEPADRETMAAELQRTNPAE 179 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 ++++E AE +L E + ++ I +R T D G F VE Sbjct: 180 LLYAE---DFAEM-ALIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VE 230 Query: 257 KT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 AA + Y+K TQ + P I E Q ++ +D+A R NLEI + L+G E Sbjct: 231 NASRGLCAAGCLLQYVKDTQRTSLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGVE 290 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 +L +D ++T G R+ + P+ ++ + R +I ++ +Q +L+ Sbjct: 291 NTLAAVLDCTVTPMGSRMLKRWLHMPVRNTDILRERQQTIGALQDT---VSELQPVLRQV 347 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP-QS 430 D+ R L+RL + P+D+A +R + LPE L +E + P Q+ Sbjct: 348 GDLERILARLALRTARPRDLARMRHAFQQ------------LPE-LHAQLETVDSAPVQA 394 Query: 431 LEKT----------LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 L K L + D P RDGG + G LDE R+L D + + L++ Sbjct: 395 LRKKMGDFAELRDLLERAIIDAPPVLVRDGGVIAPGYHEELDEWRALADGATDYLDRLEI 454 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 + E T + LK+ +N GY+I+++ + + + ++ RQT+ N R+ EL Sbjct: 455 RERERTGLDTLKVGYNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPEL 508 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 + E+++ + AL +E + ++ L + ++ L ++ +A +D+ + LA A N Sbjct: 509 KEYEDKVLTSKGKALALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLAERAWTLN 568 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 Y P + + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNM Sbjct: 569 YTCPTFTDKPGIRITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNM 619 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GGKST++RQ ALI ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ET Sbjct: 620 GGKSTYMRQTALIALLAYIGSYVPAQNVEIGPIDRIFTRVGAADDLASGRSTFMVEMTET 679 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 A+IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + Sbjct: 680 ANILHNATENSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPE 739 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 ++ N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E Sbjct: 740 KMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELE 799 Query: 841 KLYHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAV 897 + + Q D T+ S + VE ++ L+ D ++P AL+ +Y + Sbjct: 800 SISPNAAATQVD--------GTQMSLLAAPEETSPAVEALENLDPDSLTPRQALEWIYRL 851 Query: 898 KA 899 K+ Sbjct: 852 KS 853 >gi|67922769|ref|ZP_00516270.1| MutS 1 protein [Crocosphaera watsonii WH 8501] gi|67855385|gb|EAM50643.1| MutS 1 protein [Crocosphaera watsonii WH 8501] Length = 884 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 303/873 (34%), Positives = 483/873 (55%), Gaps = 41/873 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKD 80 K TPM + Y+E+K P++L+ YR+GDF+E FF DA+ S+ L + LT + GK +G+ Sbjct: 29 KKLTPMYQHYVEVKEQYPNTLLVYRVGDFFECFFQDAVTISQELELHLTSKEGGKEIGR- 87 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 + M GVP H + Y + L++ G+ +AIC+Q+E +A +G +V R + +L+TPGTLT Sbjct: 88 VAMTGVPHHALDRYSRLLVEKGYAVAICDQVEDSAQAAAQGR--MVERKITKLLTPGTLT 145 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIF 199 +D +LS +NYL A+ W +A+ DISTG F + L +++R+ P EI+ Sbjct: 146 DDGMLSAKQNNYLAAIVITGEHWGLAYADISTGEFFTTQCQDLTNLNLELLRLQPAEILI 205 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVF---------FDHSISESRIADYYNITTVDTFG 250 E +A P+ F F + ++S++ +++ +++ G Sbjct: 206 PTNAPDINSLLRPGEKSQYLADVLPDCFCYSLRSQSPFTLNEAKSKLLITFHLRSLEGLG 265 Query: 251 S-FSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SG 308 S + AA + YI+ TQ ++ + + L +D R NLEI +T+ G Sbjct: 266 CENSPLAIRAAGGLLDYIEDTQKAHQFPLQLLRTYSQVNFLILDYRTRRNLEITQTVRDG 325 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKIL 368 S SLL +D + T GGR + PL + I R ++I I+NP L I+++L Sbjct: 326 SFHGSLLWALDRTCTAMGGRALRRWLLEPLLNIKGIVARQNTIKQLIENPSLRQDIRQLL 385 Query: 369 KSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP 428 +S D+ R R+ G +D+ + + + + L + D P ++ L+ +P Sbjct: 386 RSIYDLERISGRVGAGTANARDLLSLAESLVKLKELAELASQGDSP-----YLKALQNVP 440 Query: 429 QSLEKTLSSMLSDDL----PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAE 484 LEK L + D L P +DGG +RDG + LD R + ++ +A+L++ E Sbjct: 441 PDLEK-LGQYVIDHLVESPPLHLKDGGVIRDGINGDLDAMRQRLEDDRQWLANLEITERE 499 Query: 485 ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLE 544 T + NLK+ +N GY++ + S A ++ + ++ +QT++N R+ T EL + E Sbjct: 500 RTGVTNLKVGYNKTFGYYLSMPRSKAE------QAPENYVRKQTLTNEERYITPELKERE 553 Query: 545 NRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP 604 RI A + +E E F L + E+++ + ++ +A ID+ LA +A Q YC P Sbjct: 554 TRILTAQDDLNKLEYEIFVELRLKVAEKAQEIREIAKAVAAIDVLSGLAEIAVFQGYCCP 613 Query: 605 IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 I +S + DGRHP+VE++L + F+ N ++ + + L +LTGPN GKS Sbjct: 614 EIVDSRIIEIMDGRHPVVEQSL---GAGLFVPNSTNMGDNQGEINPDLIILTGPNASGKS 670 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 +LRQ LI +MAQ GS+VPA+ A + I D++F+RVG+ D+LA+G+STFMVEM ETA+IL Sbjct: 671 CYLRQVGLIQLMAQTGSFVPATRAKLAISDRIFTRVGAVDDLATGQSTFMVEMNETANIL 730 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR 784 N AT +S ++LDEIGRGTAT DGLSIAWA EYL + R + ATH+HEL +L+ L Sbjct: 731 NHATKKSLILLDEIGRGTATFDGLSIAWAVAEYLGTEIQGRTIFATHYHELNELASILTN 790 Query: 785 FHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYH 844 N + V + I+FLH+V PG AD SYGI+ G+LAGLP +VI+RA ++ EK Sbjct: 791 IANYQVTVQELPNEIVFLHQVRPGGADKSYGIEAGRLAGLPTSVINRAKQVMNQIEK--- 847 Query: 845 HNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKI 877 H++ + L + +KN +KN + +E++ Sbjct: 848 HSKIALGLREGISKVNPTKN--TKNKQELIEQL 878 >gi|157156430|ref|YP_001464052.1| DNA mismatch repair protein MutS [Escherichia coli E24377A] gi|157078460|gb|ABV18168.1| DNA mismatch repair protein MutS [Escherichia coli E24377A] Length = 860 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 313/903 (34%), Positives = 488/903 (54%), Gaps = 73/903 (8%) Query: 17 DLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKH 76 +++++ S TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG Sbjct: 9 NIDKDFSSHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGAS 68 Query: 77 LGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTP 136 G+ IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTP Sbjct: 69 AGEPIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTP 123 Query: 137 GTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPR 195 GT++++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P Sbjct: 124 GTISDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPA 183 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQV 255 E++++E AE SL E + ++ I +R T D G F V Sbjct: 184 ELLYAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-V 234 Query: 256 EKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR 310 E AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G Sbjct: 235 ENAPRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGA 294 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 E +L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ Sbjct: 295 ENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAELQPVLRQ 351 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP-- 428 D+ R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 352 VGDLERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQ 398 Query: 429 ---------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQ 479 L L + D P RDGG + G + LDE R+L D + + L+ Sbjct: 399 ALREKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLE 458 Query: 480 LKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLE 539 ++ E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ E Sbjct: 459 VRERERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPE 512 Query: 540 LIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQ 599 L + E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A Sbjct: 513 LKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTL 572 Query: 600 NYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPN 659 NY P + + +GRHP+VE+ L + PFIAN +LS ++ ++TGPN Sbjct: 573 NYTCPTFIDKPGIRITEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPN 623 Query: 660 MGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIE 719 MGGKST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM E Sbjct: 624 MGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTE 683 Query: 720 TASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLS 779 TA+IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L Sbjct: 684 TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLP 743 Query: 780 KSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF 839 + ++ N L + + I F+H V G A SYG+ V LAG+P VI RA L+ Sbjct: 744 EKMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLREL 803 Query: 840 EKLYHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYA 896 E + + Q D T+ S ++ + VE ++ L+ D ++P AL+ +Y Sbjct: 804 ESISPNAAATQVD--------GTQMSLLSVPEEISPAVEALENLDPDSLTPRQALEWIYR 855 Query: 897 VKA 899 +K+ Sbjct: 856 LKS 858 >gi|330686135|gb|EGG97755.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis VCU121] Length = 871 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 319/907 (35%), Positives = 491/907 (54%), Gaps = 78/907 (8%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPMM+QY++IKS D L+F+R+GDFYE+FFDDA ASR L ITLTKR I Sbjct: 1 MSNVTPMMQQYLKIKSEYDDCLLFFRLGDFYEMFFDDAKEASRVLEITLTKRDAKKDNPI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A+ YI+ LI G+++AICEQ+E P + K +V+R VVR+VTPGT+ + Sbjct: 61 PMCGVPYHSADSYIETLINNGYKVAICEQMEDP-----KQTKGMVKREVVRIVTPGTVMD 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFS 200 + +NY+++ + E+A+++ DISTG K + + L+++I I+P EI+ Sbjct: 116 QGGVDEKQNNYILSFIQTPQEYALSYCDISTGELKTTHFEDEATLLNEITTINPNEIVIC 175 Query: 201 E--KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 E E + + ET+ ++ + + Y+ + ++ Q + Sbjct: 176 EPLSENMQRQINMITETI--------------TVRDEISSQYFEVNNIE-----HQHMQQ 216 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSA-----ARSNLEILRTLS-GSREQ 312 + + YI+ TQ + + ED+Q ID A+ NLE+ ++ S++ Sbjct: 217 STQLLLDYIQHTQKRDLSHL-----EDVQQYAAIDFMKMDFYAKRNLELTESIRLKSKKG 271 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 +LL +D + T G R + I PL +I RL+ ++ FI + I + ++ L Sbjct: 272 TLLWLMDETKTPMGARRLKQWIDRPLIYKQQIEERLNIVDEFINHFIERDTLRNYLNQVY 331 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELR-GAVEKLKKLPQSL 431 D+ R + R+ G +D+ ++ I NI +L + D + + A+E L L + L Sbjct: 332 DIERLVGRVSYGNVNARDLIQLKHSISEIPNIKHLLSQLDSDKITQFDALEPLDDLLEVL 391 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 E +L ++ P +DGG + G + LDE K +A LQ K E T IK+L Sbjct: 392 ENSLV----EEPPISVKDGGLFKSGFNQQLDEYLEASRNGKSWLAELQAKERERTGIKSL 447 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 KI N GYFIE+T ++ + +R +QT+SN RF T EL + E+ I A Sbjct: 448 KISFNKVFGYFIEITRANLQGFEPAQFGYNR---KQTLSNAERFITDELKEKEDIILGAE 504 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + A+ +E + F L I E +E L +++I+ +D + A +A++ NY RP + Sbjct: 505 DKAIELEYQLFVKLREHIKEYTERLQKQAKIISELDCLQSFAEIAQKYNYVRPHFSDDKT 564 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 +++ RHP+VE+ + ++ NDC L N ++L+TGPNM GKST++RQ A Sbjct: 565 LKLENSRHPVVERVM---DYNDYVPNDCALD-----NDTFIYLITGPNMSGKSTYMRQIA 616 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 +I IMAQMG+YVP A + I D++F+R+G+AD+L SG+STFMVEM+E L AT S Sbjct: 617 IISIMAQMGAYVPCESATLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTYATEDS 676 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 +I DEIGRGT+T DGL++A A IEY+ +T+ + L +TH+HELT L + L N + Sbjct: 677 LIIFDEIGRGTSTYDGLALAQAMIEYVAQTSHAKTLFSTHYHELTTLDQLLPCLKNVHVA 736 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH------ 845 ++ +IFLHKV G D SYGIQV KLA LP+ VI RA IL FE+ Sbjct: 737 ANEYKGELIFLHKVKDGAVDDSYGIQVAKLADLPDEVIQRAQVILNDFEQKSDSPEPQIV 796 Query: 846 -------------NQKDMRLYYPEIQT--KESKNNLSKNDKLFVE---KIKCLNLDEMSP 887 N+K + Y E +T +++ NL +++ E IK LNL M+P Sbjct: 797 QSESYQIEEAKAPNKKAHQNKYEEKETPFEQASFNLFESEPQQSEVEAHIKSLNLSNMTP 856 Query: 888 LTALKTL 894 + AL L Sbjct: 857 IEALVKL 863 >gi|198242699|ref|YP_002216876.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|238690373|sp|B5FTQ5|MUTS_SALDC RecName: Full=DNA mismatch repair protein mutS gi|197937215|gb|ACH74548.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326624639|gb|EGE30984.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 855 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 304/899 (33%), Positives = 486/899 (54%), Gaps = 67/899 (7%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 +++ + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG Sbjct: 5 FDKDFSNHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASA 64 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G+ IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPG Sbjct: 65 GEPIPMAGIPHHAVENYLAKLVNQGESVAICEQIGDPATSK-----GPVERKVVRIVTPG 119 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPRE 196 T++++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E Sbjct: 120 TISDEALLQERQDNLLAAIWQDGKGYGYATLDISSGRFRLSEPADRETMAAELQRTNPAE 179 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 ++++E AE +L E + ++ I +R T D G F VE Sbjct: 180 LLYAE---DFAEM-ALIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VE 230 Query: 257 KT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 AA + Y+K TQ + P I E Q ++ +D+A R NLEI + L+G E Sbjct: 231 NASRGLCAAGCLLQYVKDTQRTSLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGVE 290 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 +L +D ++T G R+ + P+ ++ + R +I ++ +Q +L+ Sbjct: 291 NTLAAVLDCTVTPMGSRMLKRWLHMPVRNTDILRERQQTIGALQDT---VSELQPVLRQV 347 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP-QS 430 D+ R L+RL + P+D+A +R + LPE L +E + P Q+ Sbjct: 348 GDLERILARLALRTARPRDLARMRHAFQQ------------LPE-LHAQLETVDSAPVQA 394 Query: 431 LEKTLSSM----------LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 L K + + D P RDGG + G LDE R+L D + + L++ Sbjct: 395 LRKKMGDFAELRDLLERAIIDAPPVLVRDGGVIAPGYHEELDEWRALADGATDYLDCLEI 454 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 + E T + LK+ +N GY+I+++ + + + ++ RQT+ N R+ EL Sbjct: 455 RERERTGLDTLKVGYNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPEL 508 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 + E+++ + AL +E + ++ L + ++ L ++ +A +D+ + LA A N Sbjct: 509 KEYEDKVLTSKGKALALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLAERAWTLN 568 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 Y P + + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNM Sbjct: 569 YTCPTFTDKPGIRITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNM 619 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GGKST++RQ ALI ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ET Sbjct: 620 GGKSTYMRQTALIALLAYIGSYVPAQNVEIGPIDRIFTRVGAADDLASGRSTFMVEMTET 679 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 A+IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + Sbjct: 680 ANILHNATENSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPE 739 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 ++ N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E Sbjct: 740 KMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELE 799 Query: 841 KLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + N ++ ++ + S VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 800 SI-SPNAAATQVDGTQMSLLAAPEEASPA----VEALENLDPDSLTPRQALEWIYRLKS 853 >gi|16330413|ref|NP_441141.1| DNA mismatch repair protein MutS [Synechocystis sp. PCC 6803] gi|1652903|dbj|BAA17821.1| DNA mismatch repair protein [Synechocystis sp. PCC 6803] Length = 912 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 294/837 (35%), Positives = 466/837 (55%), Gaps = 43/837 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TPM + Y E+K +L+ YR+GDF+E FF DA++ +R L + LT + GK +G+ + M Sbjct: 60 TPMFQHYTEVKEQYQGALLLYRVGDFFECFFQDAVIIARELELILTSKEGGKEIGR-VAM 118 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H + Y ++L++ G+ +AIC+Q+E EA+ K +V R V +L+TPGTLT+D Sbjct: 119 TGVPHHALDRYARQLVEKGYAVAICDQVEDAAEAQ--AEKRMVERQVTKLLTPGTLTDDS 176 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEK 202 +L +N+L A+A + +W +A DISTG F +SN D L +++R+ P E++ Sbjct: 177 MLPAKRNNFLAAIAMVEDKWGLAHADISTGEFFTCQSSNLDDLAVELLRLQPSEVLIPT- 235 Query: 203 ELSHAEYKSLF---ETLGNVAVAQPNVF---------FDHSISESRIADYYNITTVDTFG 250 S + +++ E ++ P F F ++ R+ + + +++ G Sbjct: 236 --SAPDIRNILRPGEPSEHIPKQLPTSFCYSLRSQAPFSLVEAKQRLLTTFRVKSLEGMG 293 Query: 251 SFS-QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SG 308 + AA + YI+ TQ + I + + L +D R NLEI +T+ G Sbjct: 294 CEGLPLAIRAAGGLLEYIEDTQKAHVVPIQPLKTYGLTDFLVLDHQTRRNLEINQTVRDG 353 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKIL 368 S SLL +D + T G R + PL D I R D+I +P L ++++L Sbjct: 354 SFHGSLLWALDRTSTTMGSRALRRWLLQPLLDLKGIQARQDTIQELYHHPALRQDLRQLL 413 Query: 369 KSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP 428 + D+ R R+ +D+ + + ++ L + P ++ L+ +P Sbjct: 414 RQIYDLERLTGRIGANTASARDVYGLASSLVRLTDLAELAQEGHSP-----YLKALQTVP 468 Query: 429 QSLE---KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE 485 LE K + + + ++ P R+G +R G + +LDE R + + +A+L++ E+ Sbjct: 469 PELEELGKYVLAHIVENPPLHIREGNLIRSGVNPTLDEMRQSLEDDNQWLANLEVTEREK 528 Query: 486 TKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 T I NLK+ +N GY++ + S K ++ D +I +QT+ N R+ T EL + E Sbjct: 529 TGIANLKVGYNKAFGYYLSLPRS------KSEQAPDNYIRKQTLVNEERYITPELKERET 582 Query: 546 RITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPI 605 RI A +E E F + + E+++ + + ++ +A ID+ LA +A Q YCRPI Sbjct: 583 RILTAQADLNQLEYEIFTEVRATVAEKAQPIRDVAKAVAAIDVLAGLAEVAVYQGYCRPI 642 Query: 606 IDNSTNFI-VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 + I ++ GRHP+VE++L + F+AND L +D L +LTGPN GKS Sbjct: 643 MQMEPGLIDIEAGRHPVVEQSL---GAGFFVANDTQLG--HDHWHPDLVILTGPNASGKS 697 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 +LRQ LI +MAQ GS++PA A + I D++F+RVG+ D+LA+G+STFMVEM ETA+IL Sbjct: 698 CYLRQVGLIQLMAQTGSFIPAKTATLSICDRIFTRVGAVDDLATGQSTFMVEMNETANIL 757 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR 784 N AT +S V+LDEIGRGTAT DGL+IAW+ EYL + R + ATH+HEL +L+ L+ Sbjct: 758 NHATAKSLVLLDEIGRGTATFDGLAIAWSVAEYLAGEIQARTIFATHYHELNELASLLEN 817 Query: 785 FHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 N + V + E IIFLH+V PG AD SYGI+ G+LAGLP++VI+RA ++ EK Sbjct: 818 VANFQVTVKELPEEIIFLHQVTPGGADKSYGIEAGRLAGLPSSVITRARQVMAQIEK 874 >gi|182418497|ref|ZP_02949790.1| DNA mismatch repair protein MutS [Clostridium butyricum 5521] gi|237667660|ref|ZP_04527644.1| DNA mismatch repair protein MutS [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377660|gb|EDT75205.1| DNA mismatch repair protein MutS [Clostridium butyricum 5521] gi|237656008|gb|EEP53564.1| DNA mismatch repair protein MutS [Clostridium butyricum E4 str. BoNT E BL5262] Length = 956 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 302/866 (34%), Positives = 503/866 (58%), Gaps = 45/866 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM +Y++ K D ++FYR+GDFYE+FFDDA+ SR L + LT + L + PMCG Sbjct: 4 TPMMVEYMKTKEQYNDCILFYRLGDFYEMFFDDAITVSRELELVLTGKNCGLEERAPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H A YI +L+ G+++AICEQ+E P +AK +V+R VV+++TPGT + Sbjct: 64 IPHHAAAAYIPRLVNKGYKVAICEQLEDPKQAK-----GIVKRGVVKIITPGTFVDSNSN 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREIIFSEKE 203 D+ YLM++ + I+ DISTG FK ++ + R L+ +I +++P+EI+ + Sbjct: 119 LENDNTYLMSIYEDVEKIGISTSDISTGEFKTTSFKNIRMSLLDEIAKVNPKEILL---D 175 Query: 204 LSHAEYKSLFETLGNV--AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 ++ +E SL + + A+ F D +S + + + + ++ G ++ E T+ Sbjct: 176 VNASE--SLINDIKGISSALITKKDFSDFIVSFDELKEQF--SDLEVSGLDNERELTSRV 231 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 + YI +TQM++ I E+ +I + + IDS +R NLE+ ++ +++ SLL +D Sbjct: 232 L-LKYINETQMMSLTNINLLEQYEIINYMTIDSNSRRNLELTESIREKTKKGSLLWVLDK 290 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 S T GGR I PL ++I RL + + + ++ LK D+ R + + Sbjct: 291 SATTMGGRTLRRWIDEPLIIKSEIEKRLSGVEEVFNSISFNDDLRTALKEIYDIERIVGK 350 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 + KD+ ++ + I L + K+ L E ++ L + LEK++ Sbjct: 351 ISNQNVNAKDMLSLKSSLSRIPEIKELLKYAKSPLLCEYYDNLDTLDDVRDLLEKSIK-- 408 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 +D ++G ++DG + +DE R + K IA+L+ + E T IK+LK+ +N Sbjct: 409 --EDPSLTIKEGNIIKDGYNDEVDELRQSKIHGKEWIAALENREREFTGIKSLKVGYNKV 466 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IE++ ++ S + + R+I +QT++N R+ T EL +E++I + + +E Sbjct: 467 FGYYIEISKANFSSI-----PEGRYIRKQTLTNAERYITEELKVMEDKILGSEEKLVNLE 521 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 F + N + + L ++++I+ +D LA++A E +Y +P I+ + + +GR Sbjct: 522 YALFMEVRNEVEKHIARLKKSARIISDLDGVSTLALIALENDYVKPEINETGIIQINEGR 581 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VEK + + F++N+ L+ +DK +L L+TGPNM GKST++RQ ALI +MAQ Sbjct: 582 HPVVEKVIGRGE---FVSNNTILN-DDDK---ELLLITGPNMAGKSTYMRQVALITLMAQ 634 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA A+I I DK+F+R+G++D+LA G+STFMVEM E ++IL AT++S V+LDE+ Sbjct: 635 IGSFVPAVSANISICDKIFTRIGASDDLAGGKSTFMVEMWEVSNILKNATSKSLVLLDEV 694 Query: 739 GRGTATLDGLSIAWATIEYL--HETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 GRGT+T DGLSIAW+ IEY+ +E RC+ L ATH+HEL L +++ N ++ V + Sbjct: 695 GRGTSTYDGLSIAWSVIEYITKNENLRCKTLFATHYHELVKLEGTIRGVKNYSVAVKKNE 754 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 + +IFL K+I G AD SYGI+V KLAGLPN VI RA +IL+ EK + ++ Y Sbjct: 755 DSVIFLRKIIEGGADESYGIEVAKLAGLPNAVIERAREILEDLEKANKVDINNLSSYETT 814 Query: 857 IQTKESKNNLSKNDKLFVEKIK-CLN 881 I+ ++ +D L+ +K C+N Sbjct: 815 IK------EIAIDDDLYTNSLKDCVN 834 >gi|329736656|gb|EGG72922.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis VCU045] Length = 873 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 318/905 (35%), Positives = 488/905 (53%), Gaps = 86/905 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY++IKS D L+F+R+GDFYE+FFDDA ASR L ITLTKR IPMCG Sbjct: 5 TPMMQQYLKIKSEYDDCLLFFRLGDFYEMFFDDAKEASRVLEITLTKRDAKKENPIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A++YI+ LI G+++AICEQ+E P + K +VRR VVR++TPGT+ + + Sbjct: 65 VPYHSADNYIETLINNGYKVAICEQMEDP-----KQTKGMVRREVVRIITPGTVMDQNGM 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204 +NY+++ E+ + + D+STG K++ + L+++I I+P EI+ + L Sbjct: 120 DEKKNNYILSFIE-NEEFGLCYCDVSTGELKVTHFKDTATLLNEITTINPNEIVIKQA-L 177 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISE----------SRIADYYNITTVDTFGSFSQ 254 S + + + V + D+ +++ + DY + T S Sbjct: 178 SEELKRQINMITETITVREDISDEDYDMNQLTHQLMHDTTQLLLDYIHHTQK---RDLSH 234 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQS 313 +E+ AA+ Y+K +D A+ NLE+ ++ S++ + Sbjct: 235 IEEVIEYAAVDYMK-----------------------MDYYAKRNLELTESIRLKSKKGT 271 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T G R + I PL + +IN RL+ + F+ I + ++ L D Sbjct: 272 LLWLMDETKTPMGARRLKQWIDRPLINKQQINDRLNIVEEFMDRFIERDTLRNHLNQVYD 331 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R + R+ G +D+ ++ I +I L N+L + ++L+ L L+ Sbjct: 332 IERLVGRVSYGNVNARDLIQLKHSISEIPHIKALL--NELGAQTTTQFKELEPLDDLLQ- 388 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L L ++ P +DGG ++G +A LDE K +A LQ K E T IK+LKI Sbjct: 389 ILEESLVEEPPISIKDGGLFKNGFNAQLDEYLEASKNGKTWLAELQAKERERTGIKSLKI 448 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GYFIE+T ++ + + + +R +QT+SN RF T EL + E+ I A + Sbjct: 449 SFNKVFGYFIEITRANLNNFQPEAFGYNR---KQTLSNAERFITDELKEKEDIILGAEDK 505 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 A+ +E E F L I +E L +++I+ +D + A +A++ NY +P + Sbjct: 506 AVELEYELFVKLREHIKTYTERLQKQAKIISELDCLQSFAEIAQKYNYVKPTFSDDKVLH 565 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +++ RHP+VE+ + ++ NDC L + ++L+TGPNM GKST++RQ A+I Sbjct: 566 LENSRHPVVERVM---DYNDYVPNDCHLD-----DETFIYLITGPNMSGKSTYMRQVAII 617 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 IMAQMG+YVP A + I D++F+R+G+AD+L SG+STFMVEM+E L AT S + Sbjct: 618 SIMAQMGAYVPCDSATLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTYATENSLI 677 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 I DEIGRGT+T DGL++A A IEY+ +T+ + L +TH+HELT L + LK N + + Sbjct: 678 IFDEIGRGTSTYDGLALAQAMIEYVAQTSHAKTLFSTHYHELTSLDQMLKCLKNVHVAAN 737 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE-----KLYHHNQK 848 + +IFLHKV G D SYGIQV KLA LPN VI RA IL FE +L H N Sbjct: 738 EYQGELIFLHKVKDGAVDDSYGIQVAKLADLPNEVIDRAQVILNAFEQKPSYQLSHENTD 797 Query: 849 DMRLY--YPE----------IQTKESKNNLSK---------NDKLFVE-KIKCLNLDEMS 886 D + Y + I+T S +N + N + VE +I+ LNL M+ Sbjct: 798 DQQTVPSYNDFGRTEEEQSVIETHTSNHNYEQATFDLFDGYNQQSEVECQIRELNLSNMT 857 Query: 887 PLTAL 891 PL AL Sbjct: 858 PLEAL 862 >gi|302332901|gb|ADL23094.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus JKD6159] Length = 872 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 321/914 (35%), Positives = 493/914 (53%), Gaps = 91/914 (9%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPMM+QY++IKS D L+F+R+GDFYE+F++DA ASR L ITLTKR I Sbjct: 1 MSNVTPMMQQYLKIKSEYQDCLLFFRLGDFYEMFYEDAKEASRVLEITLTKRDAKKENPI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A+ YI L+ G+++AICEQ+E P + K +VRR VVR+VTPGT+ E Sbjct: 61 PMCGVPYHSADSYIDTLVNNGYKVAICEQMEDP-----KQTKGMVRREVVRIVTPGTVME 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD-RLISDIMRIDPREIIFS 200 + +NY+++ + E A+++ D+STG K++ N + L+++I I+P E++ + Sbjct: 116 QGGVDDKQNNYILSFVMNQPEIALSYCDVSTGELKVTHFNDEATLLNEITTINPNEVVIN 175 Query: 201 EKELSH--------AEYKSLFETLGN--VAVAQPNVFFDHSI---SESRIADYYNITTVD 247 + H E ++ ETL + +V Q +H + + + DY + T Sbjct: 176 DNISDHLKRQINMVTETITVRETLSSEIYSVNQT----EHKLMYQATQLLLDYIHHTQK- 230 Query: 248 TFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS 307 S +E AAI Y+K +D A+ NLE+ ++ Sbjct: 231 --RDLSHIEDVVQYAAIDYMK-----------------------MDFYAKRNLELTESIR 265 Query: 308 -GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK 366 S++ +LL +D + T G R + I PL +I RLD ++ F + I + ++ Sbjct: 266 LKSKKGTLLWLMDETKTPMGARRLKQWIDRPLISKEQIEARLDIVDEFSAHFIERDTLRT 325 Query: 367 ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK 426 L D+ R + R+ G +D+ ++ I NI L N + ++ V +L+ Sbjct: 326 YLNQVYDIERLVGRVSYGNVNARDLIQLKHSISEIPNIKALL--NSMNQDTLVQVNQLEP 383 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 L L+ L L ++ P +DGG + G + LDE K +A LQ K + T Sbjct: 384 LDDLLD-ILEQSLVEEPPISVKDGGLFKVGFNMQLDEYLEASKNGKTWLAELQAKERQRT 442 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 IK+LKI N GYFIE+T ++ L+ S+ ++ +QT+SN RF T EL + E+ Sbjct: 443 GIKSLKISFNKVFGYFIEITRAN---LQNFEPSEFGYMRKQTLSNAERFITDELKEKEDI 499 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 I A + A+ +E + F L + + +E L +++I+ +D + A +A++ NY RP Sbjct: 500 ILGAEDKAIELEYQLFVQLREEVKKYTERLQQQAKIISELDCLQSFAEIAQKYNYTRPSF 559 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 + + + RHP+VE+ + ++ N+C L N ++L+TGPNM GKST+ Sbjct: 560 SENKTLELVESRHPVVERVM---DYNDYVPNNCRLD-----NETFIYLITGPNMSGKSTY 611 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ A+I IMAQMG+YVP A + I D++F+R+G+AD+L SG+STFMVEM+E L Sbjct: 612 MRQVAIISIMAQMGAYVPCKEAVLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTY 671 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT S +I DEIGRGT+T DGL++A A IEY+ ET+ + L +TH+HELT L ++L Sbjct: 672 ATEDSLIIFDEIGRGTSTYDGLALAQAMIEYVAETSHAKTLFSTHYHELTTLDQALTSLK 731 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE------ 840 N + ++ +IFLHKV G D SYGIQV KLA LP VISRA IL FE Sbjct: 732 NVHVAANEYKGELIFLHKVKDGAVDDSYGIQVAKLADLPEKVISRAQVILSEFEASAGKK 791 Query: 841 ------KLYHHNQKDMRLYYPEIQTKESKNNLSKND------KLF-------VE-KIKCL 880 K+ N+ ++ + KE+ + LS+ D LF +E +IK L Sbjct: 792 SSISNLKMV-ENEPEINQENSNLSVKETTDTLSQKDFEQASFDLFENDQESEIELQIKNL 850 Query: 881 NLDEMSPLTALKTL 894 NL M+P+ AL L Sbjct: 851 NLSNMTPIEALVKL 864 >gi|56414858|ref|YP_151933.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|81677779|sp|Q5PEE6|MUTS_SALPA RecName: Full=DNA mismatch repair protein mutS gi|56129115|gb|AAV78621.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] Length = 855 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 307/902 (34%), Positives = 486/902 (53%), Gaps = 73/902 (8%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 +++ + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG Sbjct: 5 FDKDFSNHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASA 64 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G+ IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPG Sbjct: 65 GEPIPMAGIPHHAVENYLAKLVNQGESVAICEQIGDPATSK-----GPVERKVVRIVTPG 119 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPRE 196 T++++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E Sbjct: 120 TISDEALLQERQDNLLAAIWQDGKGYGYATLDISSGRFRLSEPADRETMAAELQRTNPAE 179 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 ++++E AE +L E + ++ I +R T D G F VE Sbjct: 180 LLYAE---DFAEM-ALIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VE 230 Query: 257 KT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 AA + Y+K TQ + P I E Q ++ +D+A R NLEI + L+G E Sbjct: 231 NASRGLCAAGCLLQYVKDTQRTSLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGVE 290 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 +L +D ++T G R+ + P+ ++ + R +I ++ +Q +L+ Sbjct: 291 NTLAAVLDCTVTPMGSRMLKRWLHMPVRNTDILRERQQTIGALQDT---VSELQPVLRQV 347 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP-QS 430 D+ R L+RL + P+D+A +R + LPE L +E + P Q+ Sbjct: 348 GDLERILARLALRTARPRDLARMRHAFQQ------------LPE-LHAQLETVGSAPVQA 394 Query: 431 LEKT----------LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 L K L + D P RDGG + G LDE R+L D + + L++ Sbjct: 395 LRKKMGDFAELRDLLERAIIDAPPVLVRDGGVIAPGYHEELDEWRALADGATDYLDRLEI 454 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 + E T + LK+ +N GY+I+++ + + + ++ RQT+ N R+ EL Sbjct: 455 RERERTGLDTLKVGYNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPEL 508 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 + E+++ + AL +E + ++ L + ++ L ++ +A +D+ + LA A N Sbjct: 509 KEYEDKVLTSKGKALALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLAERAWTLN 568 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 Y P + + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNM Sbjct: 569 YTCPTFTDKPGIRITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNM 619 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GGKST++RQ ALI ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ET Sbjct: 620 GGKSTYMRQTALIALLAYIGSYVPAQNVEIGPIDRIFTRVGAADDLASGRSTFMVEMTET 679 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 A+IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + Sbjct: 680 ANILHNATENSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPE 739 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 ++ N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E Sbjct: 740 KMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELE 799 Query: 841 KLYHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAV 897 + + Q D T+ S + VE ++ L+ D ++P AL+ +Y + Sbjct: 800 SISPNAAATQVD--------GTQMSLLAAPEETSPAVEALENLDPDSLTPRQALEWIYRL 851 Query: 898 KA 899 K+ Sbjct: 852 KS 853 >gi|200388689|ref|ZP_03215301.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199605787|gb|EDZ04332.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 855 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 307/902 (34%), Positives = 486/902 (53%), Gaps = 73/902 (8%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 +++ + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG Sbjct: 5 FDKDFSNHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASA 64 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G+ IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPG Sbjct: 65 GEPIPMAGIPHHAVENYLAKLVNQGESVAICEQIGDPATSK-----GPVERKVVRIVTPG 119 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPRE 196 T++++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E Sbjct: 120 TISDEALLQERQDNLLAAIWQDGKGYGYATLDISSGRFRLSEPADRETMAAELQRTNPAE 179 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 ++++E AE +L E + ++ I +R T D G F VE Sbjct: 180 LLYAE---DFAEM-ALIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VE 230 Query: 257 KT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 AA + Y+K TQ + P I E Q ++ +D+A R NLEI + L+G E Sbjct: 231 NASRGLCAAGCLLQYVKDTQRTSLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGVE 290 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 +L +D ++T G R+ + P+ ++ + R +I ++ +Q +L+ Sbjct: 291 NTLAAVLDCTVTPMGSRMLKRWLHMPVRNTNILRERQQTIGALQDT---VSELQPVLRQV 347 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP-QS 430 D+ R L+RL + P+D+A +R + LPE L +E + P Q+ Sbjct: 348 GDLERILARLALRTARPRDLARMRHAFQQ------------LPE-LHAQLETVDSAPVQA 394 Query: 431 LEKT----------LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 L K L + D P RDGG + G LDE R+L D + + L++ Sbjct: 395 LRKKMGDFAELRDLLERAIIDAPPVLVRDGGVIAPGYHEELDEWRALADGATDYLDRLEI 454 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 + E T + LK+ +N GY+I+++ + + + ++ RQT+ N R+ EL Sbjct: 455 RERERTGLDTLKVGYNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPEL 508 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 + E+++ + AL +E + ++ L + ++ L ++ +A +D+ + LA A N Sbjct: 509 KEYEDKVLTSKGKALALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLAERAWTLN 568 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 Y P + + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNM Sbjct: 569 YTCPTFTDKPGIRIIEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNM 619 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GGKST++RQ ALI ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ET Sbjct: 620 GGKSTYMRQTALIALLAYIGSYVPAQNVEIGPIDRIFTRVGAADDLASGRSTFMVEMTET 679 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 A+IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + Sbjct: 680 ANILHNATENSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPE 739 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 ++ N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E Sbjct: 740 KMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELE 799 Query: 841 KLYHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAV 897 + + Q D T+ S + VE ++ L+ D ++P AL+ +Y + Sbjct: 800 SISPNAAATQVD--------GTQMSLLAAPEETSPAVEALENLDPDSLTPRQALEWIYRL 851 Query: 898 KA 899 K+ Sbjct: 852 KS 853 >gi|332968320|gb|EGK07391.1| DNA mismatch repair protein MutS [Kingella kingae ATCC 23330] Length = 850 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 299/881 (33%), Positives = 474/881 (53%), Gaps = 43/881 (4%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 +K +PMM+QY+ IK + D LVFYRMGDFYELFFDDA++A++ L ITLT RG+H G+ I Sbjct: 4 VKPPSPMMQQYLAIKEQHLDKLVFYRMGDFYELFFDDAVVAAKLLDITLTTRGQHNGEPI 63 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 M GVP H Y+ KL+K+G AICEQ+ + K +V R V R+VT GTLT+ Sbjct: 64 QMAGVPYHALEQYLVKLVKLGKSAAICEQVGDVVAGK------VVERKVARIVTAGTLTD 117 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 LL ++N + A + + A+AW + +G F++ ++L+ ++ R+ E++ + Sbjct: 118 SALLEDKETNRIAAWFVGKKQSALAWAALESGEFRVKLIQPNQLVDELARLQVAELLVDD 177 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQVEK--- 257 L E + +++ N + F + + DY+ + FG Q Sbjct: 178 A-------FRLPEYFPKIPISRLNAWQFAPDTAFKLLTDYFACQDLRGFGLDLQEHSAAI 230 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 +AA A ++Y+K TQ P + E + + +D+A R NLEI TLSG + +L Sbjct: 231 SAAGALLNYLKITQNQLPPHMDALTLETVNQFIALDAATRRNLEITATLSGKKSPTLFSV 290 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 D +T G RL A + PL + + RLD++ +Q+ I LK+ D+ R Sbjct: 291 FDKCVTHMGSRLLAHWLHHPLRNRDYVQARLDAVAALLQHNF--ADISNSLKNMADIERI 348 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 +R+ +G P+D++ +RD + + + + L P L + + L + Sbjct: 349 AARIALGTARPRDLSALRDAL---LQVQTIKLP---PSSLLDTLAACFPAVRDTATLLQA 402 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 L + + +DG + D A LDE R L+ + L+ + E T++ LK++ N Sbjct: 403 ALLPEPSVWLKDGNVINDNYHADLDELRHLQTHGGDFLRDLENRERERTQLSTLKVEFNR 462 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 G++IE++ + A + D + RQT+ N RF T EL E++ A AL + Sbjct: 463 VHGFYIELSKNQAELAPSDYQR------RQTLKNAERFITPELKAFEDKFLQAQERALAL 516 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E FE L +++ Q + ++ +A +D+ + A A+ Q+Y P + +G Sbjct: 517 EKTLFEQLISSLQTQLAQIQQTAKAVATLDVLCSFAHTAQTQHYIMPQFSEQAEIHIHNG 576 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE QQ ++ F N+ L+ + +L LLTGPNMGGKST++RQ ALI ++A Sbjct: 577 RHPVVE----QQVTR-FTPNNTALN-----TAQRLCLLTGPNMGGKSTYMRQVALIALLA 626 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 GS+VPA +A IG +D++F+R+G++D+LAS RSTFMVEM ETA IL+ AT QS V++DE Sbjct: 627 HTGSFVPAEHALIGKIDQIFTRIGASDDLASNRSTFMVEMSETAYILHHATAQSLVLMDE 686 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 +GRGT+T DGL++A A E+L + N+ L ATH+ ELT L + N L + + Sbjct: 687 VGRGTSTFDGLALAHAIAEHLLQHNQSLSLFATHYFELTRLPEHQSGAFNQHLSALEQGQ 746 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 I+FLH++ G A+ SYGI V KLAGLP + A L+ E Q D L+ Sbjct: 747 DIVFLHQIQDGAAEKSYGIAVAKLAGLPPIALKSARRHLRDLEVQAADRQLD--LFANNA 804 Query: 858 QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +E+ + +++ +EK+ +N D+++ AL +Y +K Sbjct: 805 IFEEALPDADDSNQAIIEKLANINPDDLTARQALDLVYELK 845 >gi|204928096|ref|ZP_03219296.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204322418|gb|EDZ07615.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 855 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 307/902 (34%), Positives = 486/902 (53%), Gaps = 73/902 (8%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 +++ + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG Sbjct: 5 FDKDFSNHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASA 64 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G+ IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPG Sbjct: 65 GEPIPMAGIPHHAVENYLAKLVNQGESVAICEQIGDPATSK-----GPVERKVVRIVTPG 119 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPRE 196 T++++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E Sbjct: 120 TISDEALLQERQDNLLAAIWQDGKGYGYATLDISSGRFRLSEPADRETMAAELQRTNPAE 179 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 ++++E AE +L E + ++ I +R T D G F VE Sbjct: 180 LLYAE---DFAEM-ALIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VE 230 Query: 257 KT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 AA + Y+K TQ + P I E Q ++ +D+A R NLEI + L+G E Sbjct: 231 NASRGLCAAGCLLQYVKDTQRTSLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGVE 290 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 +L +D ++T G R+ + P+ ++ + R +I ++ +Q +L+ Sbjct: 291 NTLAAVLDCTVTPMGSRMLKRWLHMPVRNTDILRERQQTIGALQDT---VSELQPMLRQV 347 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP-QS 430 D+ R L+RL + P+D+A +R + LPE L +E + P Q+ Sbjct: 348 GDLERILARLALRTARPRDLARMRHAFQQ------------LPE-LHAQLETVDSAPVQA 394 Query: 431 LEKT----------LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 L K L + D P RDGG + G LDE R+L D + + L++ Sbjct: 395 LRKKMGDFAELRDLLERAIIDAPPVLVRDGGVIAPGYHEELDEWRALADGATDYLDRLEI 454 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 + E T + LK+ +N GY+I+++ + + + ++ RQT+ N R+ EL Sbjct: 455 RERERTGLDTLKVGYNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPEL 508 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 + E+++ + AL +E + ++ L + ++ L ++ +A +D+ + LA A N Sbjct: 509 KEYEDKVLTSKGKALALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLAERAWTLN 568 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 Y P + + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNM Sbjct: 569 YTCPTFTDKPGIRITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNM 619 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GGKST++RQ ALI ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ET Sbjct: 620 GGKSTYMRQTALIALLAYIGSYVPAQNVEIGPIDRIFTRVGAADDLASGRSTFMVEMTET 679 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 A+IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + Sbjct: 680 ANILHNATENSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPE 739 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 ++ N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E Sbjct: 740 KMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELE 799 Query: 841 KLYHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAV 897 + + Q D T+ S + VE ++ L+ D ++P AL+ +Y + Sbjct: 800 SISPNAAATQVD--------GTQMSLLAAPEETSPAVEALENLDPDSLTPRQALEWIYRL 851 Query: 898 KA 899 K+ Sbjct: 852 KS 853 >gi|307822439|ref|ZP_07652671.1| DNA mismatch repair protein MutS [Methylobacter tundripaludum SV96] gi|307737005|gb|EFO07850.1| DNA mismatch repair protein MutS [Methylobacter tundripaludum SV96] Length = 856 Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust. Identities = 314/881 (35%), Positives = 477/881 (54%), Gaps = 45/881 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM Q+ IK+ +PD+L+FYRMGDFYELFFDDA AS+ L ITLT RG+ G IPM G Sbjct: 12 TPMMMQFHRIKAEHPDTLLFYRMGDFYELFFDDAKKASQLLDITLTSRGQSAGLPIPMAG 71 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H A Y+ KL+K G IAICEQI P +K V R VVR+VTPGT+T++ LL Sbjct: 72 IPYHAAEGYLAKLLKHGESIAICEQIGDPATSK-----GPVDRKVVRIVTPGTVTDEALL 126 Query: 146 SPTDSNYLMAVARI-RTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKE 203 N L+AV + IA +D+++G F + + D+L+S+I R++P E++F+E Sbjct: 127 EDRKDNLLVAVCSFPNAQHGIASLDLTSGRFVLQQVESIDQLLSEIGRLNPAELLFNEDW 186 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ-VEKTAAAA 262 A K G + +P F+ + + +N + +G + AA Sbjct: 187 PLPASLKQR----GGLC-RRPPWHFEAESARQLVLKQFNTLDLKGYGCENMPAAIAAAGG 241 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 + Y+K TQ P I E+ ++ +D+++R NLE+ SG + +L +D + Sbjct: 242 LLQYVKDTQQSALPHIQGIRTENSDDSILLDASSRRNLELDFHPSGQLQYTLFGVLDKTA 301 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G R I PL D +N R I+ + N +L IQ L+ D+ R SR+ Sbjct: 302 TAMGSRCLRRWINRPLRDHDILNNRYACIDTLL-NVLLYRDIQSHLRQVGDIERISSRIA 360 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 + P+D+ V+R+ + + + D P+ L ++ + P+ L K L S + D+ Sbjct: 361 LKSARPRDLLVLRNTLAVLPALQHALSDGDNPQ-LAQLCGQIGEHPEML-KLLQSAIIDN 418 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P RDGG + G LDE R+L + + + ++ + T I LK+ +N GY+ Sbjct: 419 PPVLIRDGGVIAPGYHPELDELRNLSQNADQFLIDMENREKATTGISTLKVNYNRVHGYY 478 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IE+++ + + + +QT+ R+ T EL E+++ +A +L E + Sbjct: 479 IEISNLHSEKVPT------HYTRKQTLKGAERYITEELKSFEDKVLSAKEKSLSFEKALY 532 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 E L N I L + +A +D+ + A A+ N +P + + ++ GRH +V Sbjct: 533 EELLNIIGASLIPLQQCAAALAELDVLVNFAERAETLNLSQPKLVDQPGITIEAGRHLVV 592 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 E Q S PF+ ND S ++ ++ ++TGPNMGGKST++RQ ALIV++A +G Y Sbjct: 593 E----QVSDIPFVPNDLSFS-----SNRRMLVITGPNMGGKSTYMRQAALIVLIAHIGCY 643 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA G VDK+F+R+G++D+L+SGRSTFMVEM ETA+IL+ AT++S +++DEIGRGT Sbjct: 644 VPAKSLACGPVDKIFTRIGASDDLSSGRSTFMVEMSETANILHNATSKSLILMDEIGRGT 703 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFL 802 +T DGLS+AWA ++L + + L ATH+ ELT L + K HN L + + IIFL Sbjct: 704 STFDGLSLAWACADHLAKETQAFTLFATHYFELTTLPEEQKTIHNVHLDAMEHGDKIIFL 763 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKES 862 H V G A SYG+QV LAG+P +VI +A L+ E H Y E Q + Sbjct: 764 HAVKDGPASQSYGLQVASLAGVPRSVIDKAKAKLRHLED---HA-------YIEQQAETG 813 Query: 863 KNNL----SKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 N L SK V ++ ++ DE+SP AL+ LY +K Sbjct: 814 VNQLDLFSSKECHPAVGLLEDMSPDELSPRQALELLYRLKG 854 >gi|168261963|ref|ZP_02683936.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205349131|gb|EDZ35762.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 855 Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust. Identities = 307/902 (34%), Positives = 486/902 (53%), Gaps = 73/902 (8%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 +++ + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG Sbjct: 5 FDKDFSNHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASA 64 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G+ IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPG Sbjct: 65 GEPIPMAGIPHHAVENYLAKLVNQGESVAICEQIGDPATSK-----GPVERKVVRIVTPG 119 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPRE 196 T++++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E Sbjct: 120 TISDEALLQERQDNLLAAIWQDGKGYGYATLDISSGRFRLSEPADRETMAAELQRTNPAE 179 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 ++++E AE +L E + ++ I +R T D G F VE Sbjct: 180 LLYAE---DFAEM-ALIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VE 230 Query: 257 KT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 AA + Y+K TQ + P I E Q ++ +D+A R NLEI + L+G E Sbjct: 231 NASRGLCAAGCLLQYVKDTQRTSLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGVE 290 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 +L +D ++T G R+ + P+ ++ + R +I ++ +Q +L+ Sbjct: 291 NTLAAVLDCTVTPMGSRMLKRWLHMPVRNTDILRERQQTIGALQDT---VSELQPVLRQV 347 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP-QS 430 D+ R L+RL + P+D+A +R + LPE L +E + P Q+ Sbjct: 348 GDLERILARLALRTARPRDLARMRHAFQQ------------LPE-LHAQLETVDSAPVQA 394 Query: 431 LEKT----------LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 L K L + D P RDGG + G LDE R+L D + + L++ Sbjct: 395 LRKKMGDFAELRDLLERAIIDAPPVLVRDGGVIAPGYHEELDEWRALADGATDYLDRLEI 454 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 + E T + LK+ +N GY+I+++ + + + ++ RQT+ N R+ EL Sbjct: 455 RERERTGLDTLKVGYNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPEL 508 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 + E+++ + AL +E + ++ L + ++ L ++ +A +D+ + LA A N Sbjct: 509 KEYEDKVLTSKGKALALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLAERAWTLN 568 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 Y P + + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNM Sbjct: 569 YTCPTFTDKPGIRIIEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNM 619 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GGKST++RQ ALI ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ET Sbjct: 620 GGKSTYMRQTALIALLAYIGSYVPAQNVEIGPIDRIFTRVGAADDLASGRSTFMVEMTET 679 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 A+IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + Sbjct: 680 ANILHNATENSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPE 739 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 ++ N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E Sbjct: 740 KMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELE 799 Query: 841 KLYHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAV 897 + + Q D T+ S + VE ++ L+ D ++P AL+ +Y + Sbjct: 800 SISPNAAATQVD--------GTQMSLLAAPEETSPAVEALENLDPDSLTPRQALEWIYRL 851 Query: 898 KA 899 K+ Sbjct: 852 KS 853 >gi|205373496|ref|ZP_03226299.1| DNA mismatch repair protein [Bacillus coahuilensis m4-4] Length = 867 Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust. Identities = 299/899 (33%), Positives = 506/899 (56%), Gaps = 66/899 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+++K+ D+ +F+R+GDFYE+FFDDA+ AS+ L ITLT R IPMCG Sbjct: 5 TPMIQQYLQVKADYQDAFLFFRLGDFYEMFFDDAIKASQELEITLTSRNGGDEDRIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A +YI++L++ G ++AICEQ E P AK +V+R VV+L+TPGT+ E + L Sbjct: 65 VPYHSAPNYIEQLVQKGFKVAICEQTEDPKLAK-----GVVKREVVQLITPGTVMEGKSL 119 Query: 146 SPTDSNYLMAVARIRT-EWAIAWIDISTGIFKISTSN-HDRLISDIMRIDPREIIFSEKE 203 ++NY+ +++ +A+A+ D+STG K + N D +S+I I +EII + + Sbjct: 120 VEKENNYITSLSEFSDGTFALAYADLSTGESKATIVNSFDEALSEINTIGTKEII-CDPD 178 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 L+ ++L E F +IS + + + +++ F + + EK A Sbjct: 179 LNEHLQQTLKER------------FSVTISFEKRTE--RLESIEGFFNQLKSEKAVQTAG 224 Query: 264 --ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 ++Y+ TQ + + E ++ + L +D ++ NLE+ T+ S ++ SLL +D Sbjct: 225 RLLNYLSITQKRSLDHLQPVEWYNVMNYLKMDHYSKRNLELTETIRSKGKKGSLLWLLDE 284 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 ++T GGR + I PL + + I R + ++ I++ LK D+ R R Sbjct: 285 TMTAMGGRRLKQWIDRPLINLSDIENRQKVVQLLLERFFEREEIREKLKEVYDLERLAGR 344 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLK--NDLPEELRGAVEKLKKLPQSLEKTLSSM 438 + G P+D+ ++ + + ++ L N+L +L ++ + L L++++ Sbjct: 345 VAFGNVGPRDLVQLKRSLTQIPYLQHILLSIDNNLSHDLANQLDPCEDLTDLLDQSIV-- 402 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 +D P ++G + DG + LD+ R K IA LQ E T IK+LKI +N Sbjct: 403 --EDPPLSLKEGNIICDGYNEELDQYRHASRNGKTWIAELQASERERTGIKSLKIGYNRV 460 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IEVT ++ +L++ R+ +QT+SN RF T EL + E+ I A ++ +E Sbjct: 461 FGYYIEVTKANVHLLEEG-----RYDRKQTLSNAERFITPELKEKESLILEAEEKSVELE 515 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 F+++ + E L +++++ +D+ A +++++ Y +P + + +++DGR Sbjct: 516 YRLFQLIREQVKEFIPRLQKLAKLVSEVDVLQGFATISEKRQYVKPQFNQERHLVIEDGR 575 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VEK + Q ++ N C ++ +L L+TGPNM GKST++RQ AL I+AQ Sbjct: 576 HPVVEKVMNAQE---YVPNSCHMN-----GESELLLITGPNMSGKSTYMRQVALTSILAQ 627 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +G YVPA+ A++ I D++F+R+G+AD+L SG+STFMVEM+E + + AT S ++ DEI Sbjct: 628 IGCYVPATSANLPIFDQIFTRIGAADDLISGQSTFMVEMLEARNAITYATENSLILFDEI 687 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DG+++A A IEY+HE C+ L +TH+HELT L + L N + + N Sbjct: 688 GRGTSTYDGMALAQAIIEYIHENIGCKTLFSTHYHELTVLEEKLSMLQNVHVSAMEHNGK 747 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK---------- 848 ++FLHK+ G AD SYGI V +LA LP ++I RA ++L E L H ++ Sbjct: 748 VVFLHKIKEGPADKSYGIHVAELANLPESLIKRAKELL---ENLEHQSEATNTTTKNNSQ 804 Query: 849 ---------DMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L+ +I+ ++ SK ++ + +I+ LNL EM+PL A+ TLY ++ Sbjct: 805 PLKVNDSLTQLSLFGTDIEKEKPVIKRSKKEESLLLEIQELNLLEMTPLEAMNTLYQLQ 863 >gi|282901614|ref|ZP_06309532.1| MutS 1 protein [Cylindrospermopsis raciborskii CS-505] gi|281193490|gb|EFA68469.1| MutS 1 protein [Cylindrospermopsis raciborskii CS-505] Length = 862 Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust. Identities = 296/832 (35%), Positives = 448/832 (53%), Gaps = 35/832 (4%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLT-KRGKHLGKDIPMCGV 86 M + Y+E+K P +L+ YR+GDF+E FF DA+ SR L + LT K G +G+ I M GV Sbjct: 36 MYQHYVEMKDKYPHALLMYRVGDFFETFFQDAITVSRELELVLTSKHGGDVGR-IAMTGV 94 Query: 87 PVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLS 146 P H Y +L++ G+ + IC+Q+E +A LV+R V R++TPGT+ E+ +L Sbjct: 95 PHHAWERYATQLVEKGYAVVICDQVEEASQAI-----GLVKREVTRILTPGTVLEEGMLK 149 Query: 147 PTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEKELS 205 + +NYL AV W +A+ DISTG F + S+ + L ++MR+ P E++F Sbjct: 150 ASRNNYLAAVVIAANHWGLAYADISTGEFLTTQSSELENLTQELMRLQPAEVLFPTNAPD 209 Query: 206 HAEYKSLFETLGNVAVAQPNVF---------FDHSISESRIADYYNITTVDTFGS-FSQV 255 ET ++ P F F + S++ + + +++ G + Sbjct: 210 LGTLLRPGETSPSLPQCLPPTFCYSLRSQLPFSQGEARSKLLQKFKLRSLEGIGCEHLPL 269 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSL 314 AA + YI+ TQ N + + L +D R NLEI +T+ G+ SL Sbjct: 270 AVRAAGGLLEYIEDTQKQNSVPLQLLRSYTLNDYLILDHQTRRNLEISQTVRDGTFHGSL 329 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L ++++ T GGR + PL D I +R D+I ++N L ++K+L+ D+ Sbjct: 330 LWALNHTTTPMGGRALRRWLLQPLIDIKGIRSRQDTIEELVENTPLRQDLRKLLRQIYDL 389 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R R G +D+ + D + L P ++K+ + + L K Sbjct: 390 ERLTGRAGSGTANARDLLALADSFSRLPELSQLVADARSP--FLKVLQKVPPIVEELGKK 447 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + + L + PT ++GG +R G D LDE ++ + + IA+L++ T I LK+ Sbjct: 448 IHAYLVEAPPTQLKEGGLIRSGVDRILDERKATVEADQHWIANLEVDERARTGIPTLKVG 507 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N GY+I ++ S K + D +I +QT++N R+ T EL + E RI A + Sbjct: 508 FNKTFGYYISISRS------KSDQVPDNYIRKQTLTNEERYITPELKEREARILTARDDL 561 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 +E E F L + + +E++ + S+ +A D+ LA LA Q YCRP + + Sbjct: 562 NQLEYEVFANLRDEVGSHAETIRDISRAVAAADVLCGLAELAVHQGYCRPQMLQGRELEI 621 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKL-----WLLTGPNMGGKSTFLRQ 669 DGRHP+VEK+L + F+ N L ++S +L +LTGPN GKS +LRQ Sbjct: 622 IDGRHPVVEKSL---PAGFFVPNSTGLGGGTTQDSQELSYPDLVILTGPNASGKSCYLRQ 678 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 LI +MAQ+GS+VPA A +GI D++F+RVG+ D+L++G+STFMVEM ETA+ILN AT Sbjct: 679 LGLIQLMAQIGSFVPAKSARLGICDRIFTRVGAVDDLSTGQSTFMVEMNETANILNHATA 738 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 S V+LDEIGRGTAT DGLSIAWA EYL + R + ATH+HEL +L+ L N Sbjct: 739 NSLVLLDEIGRGTATFDGLSIAWAVAEYLAAEIKARTVFATHYHELNELASILANVANYQ 798 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 + V + + IIFLH+V PG AD SYGI+ G+LAGLP VI RA ++ EK Sbjct: 799 VTVKELPDQIIFLHQVQPGGADKSYGIEAGRLAGLPAVVIERAKQVMGQIEK 850 >gi|300770018|ref|ZP_07079897.1| DNA mismatch repair protein MutS [Sphingobacterium spiritivorum ATCC 33861] gi|300762494|gb|EFK59311.1| DNA mismatch repair protein MutS [Sphingobacterium spiritivorum ATCC 33861] Length = 869 Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust. Identities = 306/891 (34%), Positives = 493/891 (55%), Gaps = 55/891 (6%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TP+M+QY IK P +L+ +R+GDFYE F +DA+ A+ LGI LTKRG + Sbjct: 6 KKETPLMQQYNAIKVKYPGALLLFRVGDFYETFGEDAIKAAGILGIVLTKRGSGSESETA 65 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 + G P H+ Y+ KL++ G R+AIC+Q+E P + K++V+R V LVTPG D Sbjct: 66 LAGFPHHSLETYLPKLVRAGQRVAICDQLEDP-----KTTKTIVKRGVTELVTPGVSYSD 120 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK 202 ++ +NYL +V + +A++DISTG F ++ N+ + + P E+I ++K Sbjct: 121 NIVQQKSNNYLASVFFEKNSTGVAFLDISTGEFLVAQGNNSYIDKLLQGFKPTEVILAKK 180 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISE-SRIADY--------YNITTVDTFG-SF 252 + +K E G+ F+ +++ E DY + + ++ FG Sbjct: 181 Q-----FKEFTEHFGSQ-------FYTYTLDEWPYTGDYATETLLKHFEVNSMKGFGIER 228 Query: 253 SQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 V AA A+ Y+ +T+ N I R + +++D NLE++ + + Sbjct: 229 MPVGIIAAGVALHYLNETEHRNLQHISNISRIEEDRYMWLDRFTIRNLELIGS-ANENAV 287 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 +L +D++ + G RL I PL D I RL+ + F QN L + + + ++ Sbjct: 288 TLSDVLDHTASPMGARLLKRWIVMPLKDRVSIQERLNVVEHFHQNRSLRDELVQEIRQVG 347 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE 432 D+ R +S++ + + P++I ++ + + I L + N E L+ E+L + Sbjct: 348 DLERLISKIGLLKANPREIMQLKRSLYA-IEKLKILTGNADTESLKIISEQLNTCSLIRD 406 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 + M ++ P G + DG D+ LD R + K + +Q + AE T I +LK Sbjct: 407 RIEREMQAEP-PVALNKGNVMADGIDSELDRLRKIAFGGKDYLLEIQKREAEMTGIPSLK 465 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 I NN GY++EVT++ KD + + +I +QT+ N R+ T EL + E +I A Sbjct: 466 IAFNNVFGYYLEVTNTH-----KD-KVPEGWIRKQTLVNAERYITEELKEYEEQILGAEE 519 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 +IE + L +AI E + + +Q++A +D+ + A++A++ Y +P I S Sbjct: 520 KIQVIENRLYAELLSAIAEYIKPVQLNAQLVAKLDVLLNFAVIAEKNFYVKPEISESKVL 579 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 +K GRHP++EK L + +I ND L D ++ ++ ++TGPNM GKS LRQ L Sbjct: 580 DIKGGRHPVIEKNLP--IGQDYITNDTFL----DNDAQQIIIITGPNMAGKSALLRQTGL 633 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 IV+MAQ+GS+VPA AHIG+VDK+F+RVG++DNL+SG STFMVEM ETASI+N +++S Sbjct: 634 IVLMAQIGSFVPAKTAHIGLVDKIFTRVGASDNLSSGESTFMVEMNETASIMNNLSDRSL 693 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATL 790 ++LDEIGRGT+T DG+SIAWA E+LH T R + L ATH+HEL +LS S+ R N + Sbjct: 694 ILLDEIGRGTSTYDGISIAWAIAEFLHNHPTARAKTLFATHYHELNELSTSMPRIKNFNV 753 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-- 848 V + N +IFL K++PG ++HS+GI V KLAG+P ++ RA +ILK E+ ++ Sbjct: 754 TVKEVNNKVIFLRKLVPGGSEHSFGIHVAKLAGMPPKLLGRANEILKRLEQERTGGEQIK 813 Query: 849 -DMRLYYPEIQTKESKNNLSKNDKLFVEKIK----CLNLDEMSPLTALKTL 894 MR +IQ + + + D +EKI+ L+++ ++P+ AL L Sbjct: 814 DSMR----KIQKQAYQLQMFAIDDPILEKIRDMLNNLDVNTLTPVEALMKL 860 >gi|172087864|emb|CAQ35088.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus] Length = 872 Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust. Identities = 324/913 (35%), Positives = 493/913 (53%), Gaps = 89/913 (9%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPMM+QY++IKS D L+F+R+GDFYE+F++DA ASR L ITLTKR I Sbjct: 1 MSNVTPMMQQYLKIKSEYQDCLLFFRLGDFYEMFYEDAKEASRVLEITLTKRDAKKENPI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A+ YI L+ G+++AICEQ+E P + K +VRR VVR+VTPGT+ E Sbjct: 61 PMCGVPYHSADSYIDTLVNNGYKVAICEQMEDP-----KQTKGMVRREVVRIVTPGTVME 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD-RLISDIMRIDPREIIFS 200 + +NY+++ + E A+++ D+STG K++ N + L+++I I+P E++ + Sbjct: 116 QGGVDDKQNNYILSFVMNQPEIALSYCDVSTGELKVTHFNDEATLLNEITTINPNEVVIN 175 Query: 201 EKELSH--------AEYKSLFETLGN--VAVAQPNVFFDHSI---SESRIADYYNITTVD 247 + H E ++ ETL + +V Q +H + + + DY + T Sbjct: 176 DNISDHLKRQINMVTETITVRETLSSEIYSVNQT----EHKLMYQATQLLLDYIHHTQK- 230 Query: 248 TFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS 307 S +E AAI Y+K +D A+ NLE+ ++ Sbjct: 231 --RDLSHIEDAVQYAAIDYMK-----------------------MDFYAKRNLELTESIR 265 Query: 308 -GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK 366 S++ +LL +D + T G R + I PL +I RLD ++ F + I + ++ Sbjct: 266 LKSKKGTLLWLMDETKTPMGARRLKQWIDRPLISKEQIEARLDIVDEFSAHFIERDTLRT 325 Query: 367 ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK 426 L D+ R + R+ G +D+ ++ I NI L N + ++ V +L+ Sbjct: 326 YLNQVYDIERLVGRVSYGNVNARDLIQLKHSISEIPNIKALL--NSMNQDTLVQVNQLEP 383 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 L L+ L L ++ P +DGG + G + LDE K +A LQ K + T Sbjct: 384 LDDLLD-ILEQSLVEEPPISVKDGGLFKVGFNMQLDEYLEASKNGKTWLAELQAKERQRT 442 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 IK+LKI N GYFIE+T ++ L+ S+ ++ +QT+SN RF T EL + E+ Sbjct: 443 GIKSLKISFNKVFGYFIEITRAN---LQNFEPSEFGYMRKQTLSNAERFITDELKEKEDI 499 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 I A + A+ +E + F L + + +E L + +++I+ +D + A +A++ NY RP Sbjct: 500 ILGAEDKAIELEYQLFVQLREEVKKYTERLQHQAKIISELDCLQSFAEIAQKYNYTRPSF 559 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 + + + RHP+VE+ + ++ NDC L N ++L+TGPNM GKST+ Sbjct: 560 SENKTLELVESRHPVVERVM---DYNDYVPNDCRLD-----NETFIYLITGPNMSGKSTY 611 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ A+I IMAQMG+YVP A + I D++F+R+G+AD+L SG+STFMVEM+E L Sbjct: 612 MRQVAIISIMAQMGAYVPCKEAVLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTY 671 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT S +I DEIGRGT+T DGL++A A IEY+ ET+ + L +TH+HELT L ++L Sbjct: 672 ATEDSLIIFDEIGRGTSTYDGLALAQAMIEYVAETSHAKTLFSTHYHELTTLDQALPSLK 731 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE----KL 842 N + ++ +IFLHKV G D SYGIQV KLA LP VISRA IL FE K Sbjct: 732 NVHVAANEYKGELIFLHKVKDGAVDDSYGIQVAKLADLPEKVISRAQVILSEFEASAGKK 791 Query: 843 YHHNQKDMRLYYPEIQ-------TKESKNNLSKND------KLF-------VE-KIKCLN 881 + M PEI +E+ + LS+ D LF +E +IK LN Sbjct: 792 SSISNLKMVENEPEINQENSNLCVEETTDTLSQKDFEQASFDLFENDQESEIELQIKNLN 851 Query: 882 LDEMSPLTALKTL 894 L M+P+ AL L Sbjct: 852 LSNMTPIEALVKL 864 >gi|302877879|ref|YP_003846443.1| DNA mismatch repair protein MutS [Gallionella capsiferriformans ES-2] gi|302580668|gb|ADL54679.1| DNA mismatch repair protein MutS [Gallionella capsiferriformans ES-2] Length = 844 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 302/892 (33%), Positives = 473/892 (53%), Gaps = 62/892 (6%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 +E N + TPMM+Q++ IK+ +PD L+FYRMGDFYE+FF+DA A++ L ITLT RG Sbjct: 1 MENNKANHTPMMQQFLRIKAEHPDGLLFYRMGDFYEMFFEDAERAAKLLDITLTHRGSSN 60 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G I MCG+P H A Y+ +L+K+G +AICEQ+ P +K V R V+R+VTPG Sbjct: 61 GVPIKMCGIPYHAAEQYLARLVKLGLSVAICEQVGDPAT-----SKGPVERKVMRIVTPG 115 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREI 197 TLT+ LL N L+++ + +AW+++++G F + + D L +++ R+ P EI Sbjct: 116 TLTDSALLDEKRDNLLLSLHQRNGLLGMAWMNLASGHFYVCETAIDNLPAELERLQPSEI 175 Query: 198 IFSEKE--LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQV 255 + +E L A + L P+ F+ + + + + FG Sbjct: 176 LQAENSNLLPAASCRQL-----------PSWHFELDTARRTLCQQFATLDLAGFGCDEYT 224 Query: 256 EKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSL 314 AA A+ YI+ TQ + + +D+A R NLEI +TL G +L Sbjct: 225 AGLEAAGALLGYIRLTQGQTMDHVSSLRVYSADHYVRMDAATRRNLEITQTLRGEAAPTL 284 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D T G RL + + PL D + RLD+++ + L + +Q LK DV Sbjct: 285 LSLLDTCSTNMGSRLLSHWLHHPLRDRDILRARLDAVDKLTE---LSDAVQTHLKPCVDV 341 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGI------RSGINILNLFLKNDLPEELRGAVEKLKKLP 428 R +R+ + P+D++ +RD + + +N + N L + L+ V L Sbjct: 342 ERITARIALKSARPRDLSGLRDTLTALPQLHTTLNACDSTRVNALSDALQADVHLTALLQ 401 Query: 429 QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 SL SS++ R+GG + DG DA LDE R ++ + +L+ + T I Sbjct: 402 ASLRSDPSSVI--------REGGVIADGFDAELDELRGIQTNCGDFLLALEAREKARTGI 453 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 LK+++N G++IEV+ + + + D + RQT+ N R+ T EL E++ Sbjct: 454 STLKVEYNRVHGFYIEVS------VAQSVNVPDDYRRRQTLKNAERYITPELKTFEDKAL 507 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 +A + AL E ++ L + L S I+ +D+ A A+ ++ P Sbjct: 508 SANDRALTREKFLYDQLLEQLAPYIAQLQRISGAISELDVLATFAERARTLHFTAPQFTG 567 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 + + GRHP+VE +++ F ND +LS ++ ++ L+TGPNMGGKST++R Sbjct: 568 DSTIQISGGRHPVVEAQVER-----FTPNDTELS-----DARRMLLITGPNMGGKSTYMR 617 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q A+I ++A +GS+VPA A +G +D++F+R+GS+D+LASGRSTFMVEM E A+IL+ AT Sbjct: 618 QVAIIALLAHVGSFVPAQQAVLGEIDQIFTRIGSSDDLASGRSTFMVEMTEAANILHNAT 677 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA 788 QS V++DEIGRGT+T DGL++A+A +L N+ L ATH+ ELT LS+ + N Sbjct: 678 AQSLVLVDEIGRGTSTFDGLALAYAIACHLLNKNQSYTLFATHYFELTRLSEEFAQLANV 737 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK--LYHHN 846 L + I+FLH V G A SYG+QV LAG+P VI A L+ E+ Sbjct: 738 HLSAIEHQHSIVFLHSVNEGAASQSYGLQVAALAGVPAQVIKTAKKQLRVLEQNSAAQSP 797 Query: 847 QKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 Q D+ P++ E + + ++ + D+MSP AL+TLY +K Sbjct: 798 QGDLFAAIPDLPEPE--------EHALLAALRDIQPDDMSPKAALETLYQLK 841 >gi|189218126|ref|YP_001938768.1| Mismatch repair ATPase MutS [Methylacidiphilum infernorum V4] gi|189184984|gb|ACD82169.1| Mismatch repair ATPase MutS [Methylacidiphilum infernorum V4] Length = 834 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 302/833 (36%), Positives = 477/833 (57%), Gaps = 45/833 (5%) Query: 20 ENLKSSTPMMRQYIEIK-SINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 ENL TPMM+QY E K ++ PD L+ +R+GDF+ELF +DA ++ L + LT+R Sbjct: 5 ENL---TPMMKQYWEAKRNLPPDVLLLFRLGDFFELFLEDAKEGAKILNLVLTQR----- 56 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + +PMCGVPV YI KL+K G R+AIC+Q+E P K G LV+R +VR+V+PG+ Sbjct: 57 QGVPMCGVPVENIEGYIGKLVKAGKRVAICDQMEQP----KPGQ--LVKRQIVRIVSPGS 110 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREI 197 L P + + M + R + I++IDI+TG+F + D+ ++R P EI Sbjct: 111 NGYGSFLHPKEHQFCMGLFPWRNKLGISFIDITTGLFLAGQLDTDKEFFEMVVRYKPVEI 170 Query: 198 IFSEKE-----LSHAEYKSLFETLGNVAVAQPNVFFDHSIS----ESRIADYYNITTVDT 248 I E A+ K E G V + +F + S +S + +++ +++++ Sbjct: 171 IVPEGVDFPFIRRDAQGKEALE--GPVQDCFIHRYFSWAFSYEEAQSFLVNHFKVSSLEG 228 Query: 249 FGSFSQVEKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS 307 +G +A A+ Y + + I + Q L+ID+ A+ LEI T S Sbjct: 229 YGLGEMPAAVCSAGALLRYFGEELHQSLSHIVKILQIVPQHILWIDAIAQKTLEINHTQS 288 Query: 308 GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI 367 S +SL + ID ++T GGRL ++ P I R +I+F++ NP +++I Sbjct: 289 KSG-KSLFEAIDRTVTPGGGRLLRRWLSEPSNQLGVIEERQQAISFWLNNPNKRKELREI 347 Query: 368 LKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL 427 L+ D+ R LS++ G P++++ I++ +R + L + L E L + + L Sbjct: 348 LEKIGDLERLLSKVSQGYVNPRELSSIKESLRQLPVVKGLL--SSLDEGLICRLCEDIAL 405 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 L + L L ++ P ++GG ++ G +LDE + + +Q K+ + + K E+T Sbjct: 406 ENELVEELEKALEENPPFSTKEGGIIKKGYCPALDELKEMSEQGKKWLIDFEQKEREKTG 465 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 IK LKIK+N GY IEV+ S + + + E RQT++N+ RF T EL ++E +I Sbjct: 466 IKTLKIKYNQVFGYLIEVSHSQSKWVPQHYE------RRQTLANVERFITPELKEIELKI 519 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 + N A+ +E FE+L I + S+ + I +D+ +LA LA+E+NYC+P + Sbjct: 520 LGSKNRAIELEQNLFEVLKEKIASRIPSIQKTMEAINKLDVLTSLADLAQERNYCKPTMV 579 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 + +++GRHPIVE+ + +S F+ N L P+ + + L+TGPNM GKST++ Sbjct: 580 DEPVIEIEEGRHPIVEQCM---ASGDFVPNSTYLG-PDQR----ILLITGPNMAGKSTYI 631 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ AL+ ++A GS++PA A IG++D++F+R+GS D+LA G+STF+VEM ETA+IL+ A Sbjct: 632 RQVALLSLLAHTGSFIPAKKAKIGLLDRIFTRIGSNDDLAMGQSTFLVEMNETANILHNA 691 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 T++S VILDE+GRGT+T DGLS+AWA +E L++TNR L ATH+HEL L+ N Sbjct: 692 TSRSLVILDEVGRGTSTFDGLSLAWAIVEELYKTNRSLSLFATHYHELAKLADIYPEIKN 751 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 ++ V +S ++FL KV+ G D SYGIQV KLAG+P+ VI +A IL E Sbjct: 752 YSMAVVESGGNVVFLRKVVKGSTDKSYGIQVAKLAGIPDRVIEKAKKILSMME 804 >gi|294788849|ref|ZP_06754090.1| DNA mismatch repair protein MutS [Simonsiella muelleri ATCC 29453] gi|294483331|gb|EFG31017.1| DNA mismatch repair protein MutS [Simonsiella muelleri ATCC 29453] Length = 848 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 306/883 (34%), Positives = 482/883 (54%), Gaps = 47/883 (5%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 +KS +PMM+QY+ IK+ + D LVFYRMGDFYELFFDDA+ A++ L ITLT RG++ G+ I Sbjct: 4 VKSPSPMMQQYLAIKAEHVDKLVFYRMGDFYELFFDDAVAAAKLLDITLTTRGQYNGEPI 63 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 M GVP H+ Y+ KL+K+G +AICEQ+ + G +V R VVR+VT GTLT+ Sbjct: 64 KMAGVPYHSVEQYLVKLVKLGKSVAICEQV------GEVGANKVVERKVVRIVTAGTLTD 117 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 LL +N + A+ + + A+AW + G F++ ++L+ ++ R+ E++ Sbjct: 118 SALLEDKQTNRVAALFVGKKQSALAWAALENGEFRVKIIQINQLLDELARLQVSELLVD- 176 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFG---SFSQVEK 257 + ++ L E + +A+ + N + F + + DY+ + FG Sbjct: 177 -----SAFR-LPENMPKIAINRLNHWQFAPDTAFKLLTDYFGSQDLLAFGLDLVRHSAAI 230 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 +AA A ++Y+K TQ P + E + +D+A R NLEI TLSG +L Sbjct: 231 SAAGALLNYLKITQNQLPPHMDALTLESETQFIALDAATRRNLEITATLSGQSAPTLFSV 290 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D +T G RL A + PL + I RLD++N + + + I LK D+ R Sbjct: 291 LDECVTHMGSRLLANWLHHPLRNHDHIQARLDAVNSLLNHDV--ESISGSLKKIADIERI 348 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEE-LRGAVEKLKKLPQSLEKTLS 436 +R+ +G P+D++ +RD ++LNL ++ LPE L + Q++ + L Sbjct: 349 AARIALGSARPRDLSALRD------SLLNL-MEIRLPESSLLDTLAACFPETQAVAELLQ 401 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + L + + +DG + + LDE R L+ + L+ + E T++ LK++ N Sbjct: 402 AALLPEPSVWLKDGDVINHQYNKDLDELRHLQTHGDDFLRDLEARERERTQLSTLKVEFN 461 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 G++IE++ + + D + RQT+ N RF T EL E++ A AL Sbjct: 462 RVHGFYIELSKNQSEQAPSD------YQRRQTLKNAERFITPELKAFEDKFLAAQEKALA 515 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E FE L ++ + + ++ A +D+ + A A+ +NY P + +++ Sbjct: 516 LEKILFEQLLGSLKDALPRIQQTAKAAATLDVLCSFAHTAQTKNYAMPTFSHDGEIDIEN 575 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE QQ ++ F N+ L+ + KL LLTGPNMGGKST++RQ ALIV++ Sbjct: 576 GRHPVVE----QQVTR-FTPNNTHLNA-----TQKLCLLTGPNMGGKSTYMRQIALIVLL 625 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A GS+VPA A IG +D++F+R+G++D+LAS RSTFMVEM ETA IL+ AT QS V++D Sbjct: 626 AHTGSFVPAKSAKIGKIDQIFTRIGASDDLASNRSTFMVEMSETAYILHHATAQSLVLMD 685 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 E+GRGT+T DGL++A A E+L N+ L ATH+ ELT L + N L + Sbjct: 686 EVGRGTSTFDGLALAHAIAEHLLMKNQSLCLFATHYFELTKLPEHYPTAFNQHLSALEQG 745 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 + I+FLH V G A+ SYGI V KLAGLP + A LK E + + + L+ Sbjct: 746 QDIVFLHDVQDGAAEKSYGIAVAKLAGLPQRALKTAQKQLKLLEN--QNTDRQLDLFAAP 803 Query: 857 IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 I + + S + L +EK+ +N D+++ AL +Y +K+ Sbjct: 804 INDESDDDAFSGS--LVLEKLNQINPDDLTARQALDLIYELKS 844 >gi|46203782|ref|ZP_00050988.2| COG0249: Mismatch repair ATPase (MutS family) [Magnetospirillum magnetotacticum MS-1] Length = 552 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 251/543 (46%), Positives = 360/543 (66%), Gaps = 14/543 (2%) Query: 364 IQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEK 423 ++ L ++PD+ R+LSR+ +GR P+D+A +RDG+ + I DLP+ L + Sbjct: 10 LRDALYAAPDIARALSRVGLGRAGPRDLAALRDGLAAAATIGERLSAEDLPDGLARLSRR 69 Query: 424 LKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 L K ++L L+ L+DDLP +RDG F+R+G A +DE R L S+++IA+LQ +YA Sbjct: 70 LAKADRALADELARALADDLPLNRRDGKFVREGYHAEIDEARLLGQDSRKVIAALQARYA 129 Query: 484 EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDL 543 E T + L+IKHNN LGY+IEV + K L F+HRQTM + RFT++EL +L Sbjct: 130 EATGCRTLRIKHNNVLGYYIEVPQAVGEACLKGLMQD--FVHRQTMVDAMRFTSVELGEL 187 Query: 544 ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCR 603 E++I A++ L +E E F+ LS + Q++++ + ++ ++ +D++ + A LA E + R Sbjct: 188 ESKIAGASDRVLALESEVFDALSARVSAQADAIADIAEALSGLDVAASHAELAVELAWTR 247 Query: 604 PIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 P ID S F ++ GRHP+VE L + + +PFIAN CDLS +G++ L+TGPNMGGK Sbjct: 248 PQIDESLAFAIEGGRHPVVEAALIR-AGEPFIANACDLS---GDEAGRIRLITGPNMGGK 303 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 STFLRQNALI ++AQMG++VPAS A +G+VD+LFSRVG+AD+LA G STFMVEM+ETA+I Sbjct: 304 STFLRQNALIAVLAQMGAFVPASSARLGVVDRLFSRVGAADDLARGHSTFMVEMVETAAI 363 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLK 783 LNQAT +S V+LDEIGRGTAT DGLSIAWA +E+LH+ N CR L ATHFHELT LS+ L Sbjct: 364 LNQATRRSLVVLDEIGRGTATFDGLSIAWACLEHLHDKNGCRALFATHFHELTALSQRLP 423 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF---- 839 R NATL+V++ ++FLH+V+PGIA+ SYG+QV +LAGLP +V++RA ILK Sbjct: 424 RLDNATLKVAEDRGEVVFLHEVVPGIAERSYGLQVARLAGLPPSVVARAGAILKGLESSE 483 Query: 840 -EKLYHHNQKDMRLYYP---EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 E+ +D+ L+ + + D I ++ D ++P AL LY Sbjct: 484 RERPTRRRIEDLPLFASLAAAPPPPPPEPAKPEPDDRLGRLIDAIDPDALTPREALDALY 543 Query: 896 AVK 898 +K Sbjct: 544 RLK 546 >gi|1592569|gb|AAB97931.1| DNA mismatch repair protein [Escherichia coli] Length = 853 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 313/900 (34%), Positives = 485/900 (53%), Gaps = 73/900 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKR G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRSASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + +A A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFAYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ + + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRHTRVLLERQQTIGA-LQD--FTAELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFIDKPGIRITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 740 EGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 799 Query: 843 YHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + Q D T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 800 SPNAAATQVD--------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|168820391|ref|ZP_02832391.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205342843|gb|EDZ29607.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320087312|emb|CBY97077.1| DNA mismatch repair protein mutS [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 855 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 307/902 (34%), Positives = 486/902 (53%), Gaps = 73/902 (8%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 +++ + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG Sbjct: 5 FDKDFSNHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASA 64 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G+ IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPG Sbjct: 65 GEPIPMAGIPHHAVENYLAKLVNQGESVAICEQIGDPATSK-----GPVERKVVRIVTPG 119 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPRE 196 T++++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E Sbjct: 120 TISDEALLQERQDNLLAAIWQDGKGYGYATLDISSGRFRLSEPADRETMTAELQRTNPAE 179 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 ++++E AE +L E + ++ I +R T D G F VE Sbjct: 180 LLYAE---DFAEM-ALIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VE 230 Query: 257 KT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 AA + Y+K TQ + P I E Q ++ +D+A R NLEI + L+G E Sbjct: 231 NASRGLCAAGCLLQYVKDTQRTSLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGVE 290 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 +L +D ++T G R+ + P+ ++ + R +I ++ +Q +L+ Sbjct: 291 NTLAAVLDCTVTPMGSRMLKRWLHMPVRNTDILRERQQTIGALQDT---VSELQPVLRQV 347 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP-QS 430 D+ R L+RL + P+D+A +R + LPE L +E + P Q+ Sbjct: 348 GDLERILARLALRTARPRDLARMRHAFQQ------------LPE-LHAQLETVDCAPVQA 394 Query: 431 LEKT----------LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 L K L + D P RDGG + G LDE R+L D + + L++ Sbjct: 395 LRKKMGDFAELRALLERAIIDAPPVLVRDGGVIAPGYHEELDEWRALADGATDYLDRLEI 454 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 + E T + LK+ +N GY+I+++ + + + ++ RQT+ N R+ EL Sbjct: 455 RERERTGLDTLKVGYNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPEL 508 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 + E+++ + AL +E + ++ L + ++ L ++ +A +D+ + LA A N Sbjct: 509 KEYEDKVLTSKGKALALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLAERAWTLN 568 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 Y P + + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNM Sbjct: 569 YTCPTFTDKPGIRITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNM 619 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GGKST++RQ ALI ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ET Sbjct: 620 GGKSTYMRQTALIALLAYIGSYVPAQNVEIGPIDRIFTRVGAADDLASGRSTFMVEMTET 679 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 A+IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + Sbjct: 680 ANILHNATENSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPE 739 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 ++ N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E Sbjct: 740 KMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELE 799 Query: 841 KLYHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAV 897 + + Q D T+ S + VE ++ L+ D ++P AL+ +Y + Sbjct: 800 SISPNAAATQVD--------GTQMSLLAAPEETSPAVEALENLDPDSLTPRQALEWIYRL 851 Query: 898 KA 899 K+ Sbjct: 852 KS 853 >gi|319779343|ref|YP_004130256.1| DNA mismatch repair protein MutS [Taylorella equigenitalis MCE9] gi|317109367|gb|ADU92113.1| DNA mismatch repair protein MutS [Taylorella equigenitalis MCE9] Length = 876 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 316/896 (35%), Positives = 494/896 (55%), Gaps = 60/896 (6%) Query: 26 TPMMRQYIEIKSINPDS-LVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 TPMM+QY +KS D L+F+RMGDFYE+F++DA + SR L +TLTKRG G DIPM Sbjct: 17 TPMMQQYFNLKSQAGDGVLLFFRMGDFYEMFYEDAEIVSRILNLTLTKRGHSGGNDIPMA 76 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G+PV + + Y+ +L+ G +AI EQI P +K V R +VR++TPGT+T++ L Sbjct: 77 GIPVQSLDQYLSRLVAQGLSVAIGEQIGDPALSK-----GPVERKIVRIITPGTITDESL 131 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 L +M + + ++W+ ++ G F+ + + L +++ R++P EII E Sbjct: 132 LPQKSDRPIMCLYSKGSFVGLSWLTLANGNFETTEVPNKSLDTELFRLNPAEIIIPEGSD 191 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG--SFSQVEKTAAAA 262 YK + P+ FD +R+ ++N+ ++ FG + + + + Sbjct: 192 YKFTYKCTITKI-------PDWHFDLKECSNRLKTFFNLDDLNIFGLGNRNSLSIITSGC 244 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 + YI+KTQ VN IG + + +D R NLE+ +L+ S +L T+D Sbjct: 245 LLRYIQKTQDVNLGHIGKISFSKDSNFISLDPYTRKNLELTESLTSSSGPTLFSTLDNCE 304 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP-------ILINPIQKILKSSPDVP 375 TG G RL I +PL +++I R IN F++ +I ++ LK+ D+ Sbjct: 305 TGMGSRLLRNWIHNPLISNSQIIERQKLINQFLEPSNSNYGFSEIIKELKSKLKTITDIE 364 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS--LEK 433 R +R+ + +PK++A +RD + + +LK+ L + L +P+S L+ Sbjct: 365 RLSTRVAMFTIKPKELAKLRDSLETL-----EYLKDFLIQHFSNLNLDLNIIPKSNDLKD 419 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L ++ + T RDGG + G D LDE R + + + + K ET I L++ Sbjct: 420 LLIKAIATEPSTMIRDGGVIAKGYDKELDELRDISSNNGSFLIEYESKLKSETGINLLRV 479 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 + N G+FIE+ S + + F +QT+ N+ R+ T EL E++I +A + Sbjct: 480 EFNRVQGFFIEIPKSQIDRIPQS------FRRKQTLKNVERYITPELKQWEDKILSADDR 533 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 A+ E F+ L + L ++IA ID+ ALA A N+ +P I + Sbjct: 534 AIKREKNLFDQLIENLQIWVSLLQELGKLIAKIDVFSALAFHAYNNNWVKPEIVDDIVIS 593 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 ++ GRHP+VE+T+++ F ANDC L+ ND+ + ++TGPNMGGKST++RQ ALI Sbjct: 594 IQKGRHPVVERTIEK-----FTANDCFLNS-NDR----MQIITGPNMGGKSTYMRQTALI 643 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 V++A+MGSYVPA A IG +D +F+R+G+AD+LA GRSTFMVEMIE ASIL +T+ S V Sbjct: 644 VLLARMGSYVPAEKADIGKIDAIFTRIGAADDLAGGRSTFMVEMIEAASILANSTSSSLV 703 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGLS+AWA L N+ L ATH+ ELT L+ N L Sbjct: 704 LMDEIGRGTSTYDGLSLAWAIACRLLNHNKSLTLFATHYFELTTLADECVGIANVHLSAV 763 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 +S+EG+IF+H+V G A+ SYGIQV + AGLP +VI +A ++L EKL N + + L+ Sbjct: 764 ESSEGLIFMHEVQSGPANKSYGIQVAQKAGLPASVIKQAQNVL---EKLNKSNSQQLDLF 820 Query: 854 YPEIQTKESKNNLSKNDKLFVEK--------IKCLNLDEMSPLTALKTLYAVKAWT 901 IQT + ++S D + V+ I ++ D +SP A + LY +K ++ Sbjct: 821 --NIQTNDI--DISFEDPIDVKSKLNEIRSFINNIDPDSISPREAHELLYKLKEFS 872 >gi|282916555|ref|ZP_06324313.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus D139] gi|282319042|gb|EFB49394.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus D139] Length = 872 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 321/914 (35%), Positives = 493/914 (53%), Gaps = 91/914 (9%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPMM+QY++IKS D L+F+R+GDFYE+F++DA ASR L ITLTKR I Sbjct: 1 MSNVTPMMQQYLKIKSEYQDCLLFFRLGDFYEMFYEDAKEASRVLEITLTKRDAKKENPI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A+ YI L+ G+++AICEQ+E P + K +VRR VVR+VTPGT+ E Sbjct: 61 PMCGVPYHSADSYIDTLVNNGYKVAICEQMEDP-----KQTKGMVRREVVRIVTPGTVME 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD-RLISDIMRIDPREIIFS 200 + +NY+++ + E A+++ D+STG K++ N + L+++I I+P E++ + Sbjct: 116 QGGVDDKQNNYILSFVMNQPEIALSYCDVSTGELKVTHFNDEATLLNEITTINPNEVVIN 175 Query: 201 EKELSH--------AEYKSLFETLGN--VAVAQPNVFFDHSI---SESRIADYYNITTVD 247 + H E ++ ETL + +V Q +H + + + DY + T Sbjct: 176 DNISDHLKRQINMVTETITVRETLSSEIYSVNQT----EHKLMYQATQLLLDYIHHTQK- 230 Query: 248 TFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS 307 S +E AAI Y+K +D A+ NLE+ ++ Sbjct: 231 --RDLSHIEDVVQYAAIDYMK-----------------------MDFYAKRNLELTESIR 265 Query: 308 -GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK 366 S++ +LL +D + T G R + I PL +I RLD ++ F + I + ++ Sbjct: 266 LKSKKGTLLWLMDETKTPMGARRLKQWIDRPLISKEQIEARLDIVDEFSAHFIERDTLRT 325 Query: 367 ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK 426 L D+ R + R+ G +D+ ++ I NI L N + ++ V +L+ Sbjct: 326 YLNQVYDIERLVGRVSYGNVNARDLIQLKHSISEIPNIKALL--NSMNQDTLVQVNQLEP 383 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 L L+ L L ++ P +DGG + G + LDE K +A LQ K + T Sbjct: 384 LDDLLD-ILEQSLVEEPPISVKDGGLFKVGFNMQLDEYLEASKNGKTWLAELQAKERQRT 442 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 IK+LKI N GYFIE+T ++ L+ S+ ++ +QT+SN RF T EL + E+ Sbjct: 443 GIKSLKISFNKVFGYFIEITRAN---LQNFEPSEFGYMRKQTLSNAERFITDELKEKEDI 499 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 I A + A+ +E + F L + + +E L +++I+ +D + A +A++ NY RP Sbjct: 500 ILGAEDKAIELEYQLFVQLREEVKKYTERLQQQAKIISELDCLQSFAEIAQKYNYTRPSF 559 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 + + + RHP+VE+ + ++ N+C L N ++L+TGPNM GKST+ Sbjct: 560 SENKTLELVESRHPVVERVM---DYNDYVPNNCRLD-----NETFIYLITGPNMSGKSTY 611 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ A+I IMAQMG+YVP A + I D++F+R+G+AD+L SG+STFMVEM+E L Sbjct: 612 MRQVAIISIMAQMGAYVPCKEAVLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTY 671 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT S +I DEIGRGT+T DGL++A A IEY+ ET+ + L +TH+HELT L ++L Sbjct: 672 ATEDSLIIFDEIGRGTSTYDGLALAQAMIEYVAETSHAKTLFSTHYHELTTLDQALPSLK 731 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE------ 840 N + ++ +IFLHKV G D SYGIQV KLA LP VISRA IL FE Sbjct: 732 NVHVAANEYKGELIFLHKVKDGAVDDSYGIQVAKLADLPEKVISRAQVILSEFEASADKK 791 Query: 841 ------KLYHHNQKDMRLYYPEIQTKESKNNLSKND------KLF-------VE-KIKCL 880 K+ N+ ++ + KE+ + LS+ D LF +E +IK L Sbjct: 792 SSISNLKMV-ENEPEINQENSNLSVKETTDTLSQKDFEQASFDLFENDQESEIELQIKNL 850 Query: 881 NLDEMSPLTALKTL 894 NL M+P+ AL L Sbjct: 851 NLSNMTPIEALVKL 864 >gi|168235947|ref|ZP_02661005.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194737683|ref|YP_002115858.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|238693685|sp|B4TTU0|MUTS_SALSV RecName: Full=DNA mismatch repair protein mutS gi|194713185|gb|ACF92406.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197290761|gb|EDY30115.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 855 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 306/902 (33%), Positives = 486/902 (53%), Gaps = 73/902 (8%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 +++ + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG Sbjct: 5 FDKDFSNHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASA 64 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G+ IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPG Sbjct: 65 GEPIPMAGIPHHAVENYLAKLVNQGESVAICEQIGDPATSK-----GPVERKVVRIVTPG 119 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPRE 196 T++++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E Sbjct: 120 TISDEALLQERQDNLLAAIWQDGKGYGYATLDISSGRFRLSEPADRETMAAELQRTNPAE 179 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 ++++E AE +L E + ++ I +R T D G F VE Sbjct: 180 LLYAE---DFAEM-ALIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VE 230 Query: 257 KT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 AA + Y+K TQ + P I E Q ++ +D+A R NLEI + L+G E Sbjct: 231 NASRGLCAAGCLLQYVKDTQRTSLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGVE 290 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 +L +D ++T G R+ + P+ ++ + R +I ++ +Q +L+ Sbjct: 291 NTLAAVLDCTVTPMGSRMLKRWLHMPVRNTDILRERQQTIGALQDT---VSELQPVLRQV 347 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP-QS 430 D+ R L+RL + P+D+A +R + LPE L +E + P Q+ Sbjct: 348 GDLERILARLALRTARPRDLARMRHAFQQ------------LPE-LHAQLETVDSAPVQA 394 Query: 431 LEKT----------LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 L K L + D P RDGG + G LDE R+L D + + L++ Sbjct: 395 LRKKMGDFAELRDLLERAIIDAPPVLVRDGGVIAPGYHEELDEWRALADGATDYLDRLEI 454 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 + E T + LK+ +N GY+I+++ + + + ++ RQT+ N R+ EL Sbjct: 455 RERERTGLDTLKVGYNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPEL 508 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 + E+++ + AL +E + ++ L + ++ L ++ +A +D+ + L+ A N Sbjct: 509 KEYEDKVLTSKGKALALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLSERAWTLN 568 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 Y P + + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNM Sbjct: 569 YTCPTFTDKPGIRITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNM 619 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GGKST++RQ ALI ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ET Sbjct: 620 GGKSTYMRQTALIALLAYIGSYVPAQNVEIGPIDRIFTRVGAADDLASGRSTFMVEMTET 679 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 A+IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + Sbjct: 680 ANILHNATENSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPE 739 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 ++ N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E Sbjct: 740 KMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELE 799 Query: 841 KLYHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAV 897 + + Q D T+ S + VE ++ L+ D ++P AL+ +Y + Sbjct: 800 SISPNAAATQVD--------GTQMSLLAAPEETSPAVEALENLDPDSLTPRQALEWIYRL 851 Query: 898 KA 899 K+ Sbjct: 852 KS 853 >gi|194433013|ref|ZP_03065296.1| DNA mismatch repair protein MutS [Shigella dysenteriae 1012] gi|194418740|gb|EDX34826.1| DNA mismatch repair protein MutS [Shigella dysenteriae 1012] gi|332088709|gb|EGI93822.1| DNA mismatch repair protein MutS [Shigella dysenteriae 155-74] Length = 853 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 313/900 (34%), Positives = 484/900 (53%), Gaps = 73/900 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + + D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMTVRDTRVLLERQQTIGA-LQD--FTAELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFIDKPGIRITEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 740 EGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 799 Query: 843 YHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + Q D T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 800 SPNAAATQVD--------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|169827225|ref|YP_001697383.1| DNA mismatch repair protein [Lysinibacillus sphaericus C3-41] gi|226723063|sp|B1HRG8|MUTS_LYSSC RecName: Full=DNA mismatch repair protein mutS gi|168991713|gb|ACA39253.1| DNA mismatch repair protein [Lysinibacillus sphaericus C3-41] Length = 856 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 306/897 (34%), Positives = 504/897 (56%), Gaps = 69/897 (7%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPMM+QY+++K D+ +F+R+GDFYE+FF+DA+ AS+ L ITLT R + I Sbjct: 1 MTTYTPMMQQYLQVKEDYKDAFLFFRLGDFYEMFFEDAINASQILEITLTSRDAGAKERI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A +YI+ L++ G+++AICEQ E P +AK +V+R VV+L+TPGT+ E Sbjct: 61 PMCGVPHHSAKNYIETLVQKGYKVAICEQTEDPKQAK-----GVVKREVVQLITPGTIME 115 Query: 142 DQLLSPTDSNYLMAVARIR-TEWAIAWIDISTGIFKISTSNHD--RLISDIMRIDPREII 198 + L ++++ A ++ T + A++D+STG S+ D L+ + RE+I Sbjct: 116 GKTLEGKSNHFIGAAEQLDDTTFGYAYLDLSTGEAVASSIEGDGKALLMQMQAYGIRELI 175 Query: 199 FSEK-ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 ++ +L AE+ + N A+ S+ + T+D S+ VE Sbjct: 176 VTDSLQLLLAEHAA------NAAIVL-------SVEADEM-------TMDKAASY--VEA 213 Query: 258 TAAAAAIS------YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 A IS YI KTQM + I +++ L IDS+++ NLE+++++ G + Sbjct: 214 VPPALQISCLRLLAYIDKTQMRSLSHIQAFTFNEMKHYLRIDSSSKRNLELIQSIRGGDQ 273 Query: 312 Q-SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 + +LL +D ++T GGR + + PL + I +RL + ++ + +Q LK Sbjct: 274 KGTLLWLLDDTVTAMGGRKLKQWLHQPLATRSAIESRLAIVTDLLEEYFVRTELQTALKQ 333 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGA-VEKLKKLPQ 429 D+ R R+ G +D+A +RD +R I ++L GA E L+++ Sbjct: 334 VYDLERLAGRVAFGNVGGRDLAQLRDSLRQVPAI---------QQQLMGAGKETLQQIGV 384 Query: 430 SLE------KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 +L+ + L+ ++D+ P ++G +RDG LDE R K IA L+ + Sbjct: 385 ALDTCTDVVELLAKAITDNPPITIKEGDVIRDGYHGRLDELRYAARNGKDWIAQLEQEER 444 Query: 484 EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDL 543 +T IKNLKI +N GY+IE+T S+ + DL R+ +QT++N R+ T EL + Sbjct: 445 LKTGIKNLKIGYNRIFGYYIEITKSNIHL--ADL---TRYERKQTLANAERYITQELKEK 499 Query: 544 ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCR 603 E I NA +L +E F + +A+ E + + I+ +D+ ++ A ++++ + + Sbjct: 500 EALILNAEEESLALEYNLFVEIRDALKEFIPRVQALAASISELDVLLSFASISEKYRFTK 559 Query: 604 PIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 P N + +GRHP+VEK L +Q ++ NDC L N+ + L+TGPNM GK Sbjct: 560 PQFHNGRALEIIEGRHPVVEKMLNKQM---YVPNDCVLEEQNN-----MMLITGPNMSGK 611 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 ST++RQ ALIV+MAQMG YVPA A + I D++F+R+G+AD+LA+G+STFMVEM+E+ Sbjct: 612 STYMRQVALIVVMAQMGCYVPAEKAKLPITDQIFTRIGAADDLAAGQSTFMVEMLESQHA 671 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLK 783 + AT S ++ DEIGRGT+T DG+S+A + +EY+H+ L +TH+HELT L K L Sbjct: 672 IMHATKNSLMLFDEIGRGTSTYDGMSLAQSMMEYIHDKIGANTLFSTHYHELTALEKDLP 731 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY 843 R N + ++ N ++FLHKV G AD SYGI V +LA LP +++RA +L+ FE Sbjct: 732 RLQNVHVAATEKNGMVVFLHKVKKGAADKSYGIHVAQLAQLPEEILARARVLLENFEAGN 791 Query: 844 HHNQKDMRLYYPEIQTK--ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + ++ P +Q + ++ + ++K++ +N+ SP+ A+ LY ++ Sbjct: 792 EVVAEAQKIAEPPLQMSLFTEEEPMAPAEAEVLKKLEKVNILGTSPMQAMNILYELQ 848 >gi|284035449|ref|YP_003385379.1| DNA mismatch repair protein MutS [Spirosoma linguale DSM 74] gi|283814742|gb|ADB36580.1| DNA mismatch repair protein MutS [Spirosoma linguale DSM 74] Length = 886 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 304/891 (34%), Positives = 493/891 (55%), Gaps = 44/891 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K+ TP+ RQY +IK+ P +L+ +R+GDFYE F +DA+ AS+ LGITLTKR G + Sbjct: 13 KNETPLNRQYNQIKAKYPGALLLFRVGDFYETFGEDAVRASKILGITLTKRNNG-GANEE 71 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 + G P H+ + ++ KL++ G R+AIC+Q+E P AK +VRR V LVTPG D Sbjct: 72 LAGFPHHSLDTHLPKLVRAGERVAICDQLEDPSVAK-----GIVRRGVTELVTPGVSFND 126 Query: 143 QLLSPTDSNYLMAV--ARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 +L +NYL AV + + I+++DISTG F S N + + +P E+++ Sbjct: 127 NVLDTRRNNYLAAVHFGKADDTFGISFLDISTGEFLASQGNSAYVDKLLQSFNPSEVLYC 186 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 ++ + E+ SLF + + + F + + + ++ T++ FG + A Sbjct: 187 KR--NRQEFGSLFGDKFHTYTLE-DWAFTYDFGYNFLKQHFQTTSLKGFGIEGMPDGIIA 243 Query: 261 AAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A I Y+ +T+ + I R + +++D NLE L L++ +D Sbjct: 244 AGVIMHYLNETEHKDLQHITRVTRLEEDRYVWLDRFTIRNLE-LTVAQQEGGVPLIQILD 302 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 ++T G RL + ++ PL + I+ RL+ ++ + + L + + L+ D+ R +S Sbjct: 303 QTVTPMGARLLRKWLSLPLKEKALIDERLNMVDLLVNDLDLADAMVNHLRQIGDLERLVS 362 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRG-AVEKLKKLPQSLEKT---- 434 ++ + R P+++ ++ ++ + I L + EL G LKK L Sbjct: 363 KVAVRRISPRELLQLKRSLQHVLPIKELLITALSQNELAGLHAGSLKKYADQLNPVAFLL 422 Query: 435 --LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 + + L +D PT GG ++ G +A LDE ++ K + LQ + + T I +LK Sbjct: 423 DRIETELREDPPTLSNQGGMIKPGINAELDELTAIAYSGKDYLLQLQEREVQRTGITSLK 482 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 I +N GY++EVT + + + +D +I +QT+ N R+ T EL + E++I NA Sbjct: 483 IAYNKVFGYYLEVTHAHKNRVPED------WIRKQTLVNAERYITPELKEYEDKILNAEE 536 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 IE F L A E ++ ++V++++D+ + +A + Y RP I+ S Sbjct: 537 QIFQIEARMFNELVIAAGEYVGAIQQNARVLSVLDVLASFGRVAVKNKYVRPSINESKVL 596 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 +KDGRHP++E+ L +P+I ND L D + ++ ++TGPNM GKS LRQ AL Sbjct: 597 DIKDGRHPVIEQQLP--PGEPYIPNDVYL----DDETQQIIIITGPNMAGKSALLRQTAL 650 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 IV+MAQ GS+VPAS A IGIVDK+F+RVG++DNL+ G STFMVEM ETASILN + +S Sbjct: 651 IVLMAQSGSFVPASSAEIGIVDKIFTRVGASDNLSRGESTFMVEMTETASILNNLSERSL 710 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCR--GLLATHFHELTDLSKSLKRFHNATL 790 +++DEIGRGT+T DG+SIAW+ EYLH CR L ATH+HEL DL+ R N + Sbjct: 711 ILMDEIGRGTSTYDGVSIAWSITEYLHNKTDCRPKTLFATHYHELNDLAADNHRIRNYNV 770 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH--NQK 848 V + +IFL K+ G ++HS+GI V ++AG+P ++SRA +ILK E + N++ Sbjct: 771 SVKELGNKVIFLRKLKEGGSEHSFGIHVAQMAGMPAQIVSRANEILKQLESSHQRETNKE 830 Query: 849 DMRLYYPE-----IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 +R P+ ++ ES + S+ K EK++ ++++ ++P+ AL L Sbjct: 831 KIREAVPQERELALRIIESGDPKSEAIK---EKLRAIDVNRLTPIEALLKL 878 >gi|307152088|ref|YP_003887472.1| DNA mismatch repair protein MutS [Cyanothece sp. PCC 7822] gi|306982316|gb|ADN14197.1| DNA mismatch repair protein MutS [Cyanothece sp. PCC 7822] Length = 892 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 298/841 (35%), Positives = 466/841 (55%), Gaps = 42/841 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TPM + YIE+K P++L+ YR+GDF+E FF DA+ S+ L + LT + GK +G+ + M Sbjct: 33 TPMSQHYIEVKEQYPNALLLYRVGDFFECFFQDAVTISQELELALTSKDGGKEIGR-VAM 91 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H + Y + L++ G+ + IC+Q+E EA G +V R + +L+TPGT+T++ Sbjct: 92 TGVPHHALDRYSRLLVEKGYAVIICDQVEDAAEAAAAGR--MVERQITKLLTPGTITDEG 149 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEK 202 +L +NYL A+ + W +A+ DISTG F + SN+ L +++R+ P EI+ Sbjct: 150 MLHARKNNYLAAIVIAKDHWGLAYADISTGEFLTTQSNNLSALTLELLRLQPSEILIPTN 209 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVF---------FDHSISESRIADYYNITTVDTFGSFS 253 E +A P+ F F + ++ R+ + + +++ G Sbjct: 210 APDINSLLRPGEKSDYLADYLPDCFCYSLRSQIPFTLNEAKPRLLTTFRLKSLEGLGCEE 269 Query: 254 -QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSRE 311 + AA + YI+ TQ ++ + + ++ L +D R NLEI T+ S Sbjct: 270 LTLAIRAAGGLLEYIEDTQKAHQVPLQPLKTYNLTEFLVLDYQTRRNLEITSTVRDNSYY 329 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 SLL +D + T GGR ++ PL I RLD+I +NP L ++++L+ Sbjct: 330 GSLLWALDRTATAMGGRALRRWLSEPLLSIKGITARLDTIEELKENPSLRTDLRQLLRDI 389 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSL 431 D+ R R+ G +++ + + ++ +L + P + L+K+P L Sbjct: 390 YDLERITGRVGAGTANARELLALAQSLVRLTDLADLAKGGNSP-----YLRALQKIPPDL 444 Query: 432 E---KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 E K + + L + P +DGG ++DG + LDE R L ++ ++ +A+L++ + T I Sbjct: 445 EALGKEVVAHLVETPPLHLKDGGVIQDGVNFQLDEMRRLYEEDQQWLANLEVSERQRTGI 504 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 NLKI +N GY+I + + A + + +I +QT++N R+ T EL + E RI Sbjct: 505 SNLKIGYNKTFGYYISLPRAKAD------HAPENYIRKQTLTNEERYITPELKERETRIE 558 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 A + +E + F L + E+++ + N ++ +A ID+ LA +A Q+Y RP I Sbjct: 559 RAKDELHELEYQIFSQLRAKVAEKAQEIRNIAKAVAAIDVLAGLAEVAVYQSYSRPQITE 618 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDL-SCP-------NDKNSGKLWLLTGPNM 660 + DGRHP+VE++L F+ N +L S P N+++ L +LTGPN Sbjct: 619 GRIIEITDGRHPVVEQSLGMGF---FVPNSTNLGSLPPSKISEGNNQDYPDLIILTGPNA 675 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GKS +LRQ LI +MAQ+GS+VPA A +GI D++F+RVG+ D+LA+G+STFMVEM ET Sbjct: 676 SGKSCYLRQVGLIQLMAQIGSFVPAKAALLGICDRIFTRVGAVDDLATGQSTFMVEMNET 735 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 A+ILN AT S V+LDEIGRGTAT DGLSIAWA EYL + R + ATH+HEL +L+ Sbjct: 736 ANILNHATPNSLVLLDEIGRGTATFDGLSIAWAVAEYLAAEIQARTIFATHYHELNELAS 795 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 L N + V + IIFLH+V PG AD SYGI+ G+LAGLP+ VI RA ++ E Sbjct: 796 ILSNVANYQVTVKEMPNEIIFLHQVRPGGADKSYGIEAGRLAGLPSVVIDRARQVMTQIE 855 Query: 841 K 841 K Sbjct: 856 K 856 >gi|315658413|ref|ZP_07911285.1| DNA mismatch repair protein MutS [Staphylococcus lugdunensis M23590] gi|315496742|gb|EFU85065.1| DNA mismatch repair protein MutS [Staphylococcus lugdunensis M23590] Length = 869 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 323/903 (35%), Positives = 486/903 (53%), Gaps = 77/903 (8%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPMM+QY+ IK+ D L+F+R+GDFYE+FFDDA ASR L ITLTKR K I Sbjct: 1 MANVTPMMQQYLNIKAQYNDCLLFFRLGDFYEMFFDDAKEASRVLEITLTKRDAKKEKPI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+AN YI+ LI G+++AICEQ+E P + K +V+R VVR+VTPGT+ E Sbjct: 61 PMCGVPYHSANSYIETLINNGYKVAICEQMEDP-----KQTKGMVKREVVRIVTPGTVME 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFS 200 + +NY+++ + + + A+++ D+STG K + L+++I I+P EI+ + Sbjct: 116 QGGVDDKQNNYILSFIQRQNQIALSYCDVSTGELKTTQFEGTSTLLNEITTINPNEIVVN 175 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 + LS A + + T + V +ES + Y + F A Sbjct: 176 QA-LSDALTRQINLTTETITV-----------NESLSQNVYEVNPKKETLMFE-----AT 218 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFID-----SAARSNLEILRTLS-GSREQSL 314 + YI TQ + I ED++ ID A+ NLE+ ++ S++ +L Sbjct: 219 QLLLDYIHHTQKRDLSHI-----EDVKEYAAIDFMKMDYYAKRNLELTESIRLKSKKGTL 273 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D + T G R + I PL +I RL++++ I I + ++ L DV Sbjct: 274 LWLMDETKTPMGARRLKQWIDRPLIQQQEIEHRLNAVDQLINAFIERDTLRGYLNQVYDV 333 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R + R+ G +D+ ++ I +I L L+ D + +KL+ L L+ Sbjct: 334 ERLVGRVSYGNVNARDLIQLKHSISEIPHIKQLLLEMD--QTFSQQFDKLEPLDDLLD-I 390 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L + + ++ P +DGG + G + LDE K +A LQ + E+T IK+LKI Sbjct: 391 LENSIVEEPPISVKDGGLFKRGFNQQLDEYLDASQNGKSWLAQLQAREREKTGIKSLKIS 450 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHR-QTMSNLTRFTTLELIDLENRITNATNS 553 N GYFIE+T ++ + D HR QT+SN RF T EL + E+ I A + Sbjct: 451 FNKVFGYFIEITRANL----QGFNPTDYGYHRKQTLSNAERFITDELKEKEDIILGAEDK 506 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 A+ +E + F L I +E L +++I+ +D + A +A+ NY RP + Sbjct: 507 AVELEYQLFVKLREHIKTYTEKLQQQAKIISELDCLQSFAEIAQRYNYTRPQFSENKTLN 566 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +++ RHP+VE+ + ++ NDC L+ N ++L+TGPNM GKST++RQ A+I Sbjct: 567 LENSRHPVVERVMDHND---YVPNDCLLNKEN-----FIYLITGPNMSGKSTYMRQVAII 618 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 IMAQMGS+VP A + I D++F+R+G+AD+L SG+STFMVEM+E L AT S + Sbjct: 619 SIMAQMGSFVPCDKATLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTYATADSLI 678 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 I DEIGRGT+T DGL++A + IEY+ +T+ + L +TH+HELTDL + L N + Sbjct: 679 IFDEIGRGTSTYDGLALAQSMIEYVAKTSHAKTLFSTHYHELTDLDQELSCLKNVHVAAD 738 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE-------KLYHHN 846 + +IFLHKV G D SYGIQV KLA LPN VI RA IL FE ++ + Sbjct: 739 EYQGELIFLHKVKDGAVDDSYGIQVAKLADLPNEVIERAQVILDQFEQKSTQSSQIRSQD 798 Query: 847 QKDMRLYYPEIQT---KESKNNLSKN----------DKLFVE-----KIKCLNLDEMSPL 888 KD Y E Q+ K+S+N K D + E +I+ LN+ M+PL Sbjct: 799 NKDA--YIAESQSAYLKDSENQAVKPAYEQTTFSLFDDVTTESEIEAEIRTLNISNMTPL 856 Query: 889 TAL 891 AL Sbjct: 857 DAL 859 >gi|303236244|ref|ZP_07322840.1| DNA mismatch repair protein MutS [Prevotella disiens FB035-09AN] gi|302483558|gb|EFL46557.1| DNA mismatch repair protein MutS [Prevotella disiens FB035-09AN] Length = 888 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 289/829 (34%), Positives = 458/829 (55%), Gaps = 29/829 (3%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TPMMRQ+ +K +PD+L+ +R GDFYE + DDA+ AS+ LGITLT+R Sbjct: 6 KGLTPMMRQFFSMKEKHPDALMLFRCGDFYETYCDDAIEASKILGITLTRRNNGAAAGDE 65 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAK-----KRG---NKSLVRRNVVRLV 134 M G P H + ++ KLI+ G R+AIC+Q+E P + + KRG +V+R + LV Sbjct: 66 MAGFPHHALDTFLPKLIRAGKRVAICDQLEDPKKKREELKGKRGLSAEDKMVKRGITELV 125 Query: 135 TPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDP 194 TPG D +L+ ++N+L AV + ++++DISTG F D + I P Sbjct: 126 TPGVALGDNVLNYKENNFLAAVHFGKGACGVSFLDISTGEFLTGEGTFDYVEKLIGNFSP 185 Query: 195 REIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 +E+++ + +++ F T + VF D S + ++ ++ + FG Sbjct: 186 KEVLYDR--VRKNDFEQHFGTRLCTFEMEDWVFTDQS-ARQKLLKHFGTKNLKGFGVDHL 242 Query: 255 VEKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA AI Y++ TQ N I R + + + +D +LE++ + S Sbjct: 243 TNGVIAAGAIMQYLEITQHTNINHITSLTRIEEEKYVRLDRFTIRSLELVAPMQ-EDGTS 301 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D SIT GGR+ + PL D IN RL+ + ++ + P I L D Sbjct: 302 LLNVVDRSITPMGGRMLHRWLIFPLKDVKPINERLEIVEYYFREPDFRQCINDQLHRIGD 361 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R +S++ +GR P+++ ++ + I + + E L+ E+L L S+ + Sbjct: 362 LERIISKVAVGRVSPREVVQLKTAL-CAIQPMKSACLSTNNEALKRIGEQLN-LCASIRE 419 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + + D P G + G +A LDE R++RD K+++ +Q K AE+T I +LKI Sbjct: 420 RIEQEIKPDPPQLVNKGDVIATGYNAELDELRAIRDNGKQVLLEIQEKEAEKTGINSLKI 479 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 NN GY++EV ++ + +D +I +QT++ R+ T EL + E +I A Sbjct: 480 GFNNVFGYYLEVRNTFKDKVPED------WIRKQTLAQAERYITPELKEYEAKILGADEK 533 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 L +E F L + E + + +IA +D ++ A +A+E Y RP++D+ST Sbjct: 534 ILALEARLFSELVQDMQEFIPQIQINANLIARLDCLLSFAKVAEENKYVRPVVDDSTIID 593 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +K GRHP++E L + ++ ND L D ++ ++TGPNM GKS LRQ ALI Sbjct: 594 IKKGRHPVIETQLPLGET--YVPNDVYL----DNEQQQIMMITGPNMAGKSALLRQTALI 647 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 V++AQ+GS+VPA A +G+VDK+F+RVG++DN++ G STFMVEM E ++ILN T +S + Sbjct: 648 VLLAQVGSFVPAEGARVGLVDKIFTRVGASDNISLGESTFMVEMTEASNILNNVTPRSLI 707 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQ 791 + DE+GRGT+T DG+SIAWA +EYLHE R R L ATH+HEL +++K KR N + Sbjct: 708 LFDELGRGTSTYDGISIAWAIVEYLHEQPRASARTLFATHYHELNEMAKIFKRIKNFNVS 767 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 V + + IIFL K+ G ++HS+GI V +AG+P +++ RA +LK E Sbjct: 768 VKELDGKIIFLRKLEKGGSEHSFGIHVADIAGMPKSIVKRANVVLKELE 816 >gi|300866162|ref|ZP_07110881.1| DNA mismatch repair protein mutS [Oscillatoria sp. PCC 6506] gi|300335841|emb|CBN56041.1| DNA mismatch repair protein mutS [Oscillatoria sp. PCC 6506] Length = 875 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 295/833 (35%), Positives = 460/833 (55%), Gaps = 34/833 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TPMM++Y+ +K P +L+F+R+GDF+E FF DA+ S L + T + GK +G+ +PM Sbjct: 30 TPMMQRYVGVKEQYPHALLFFRVGDFFECFFQDAVTISGELELVCTSKEGGKEIGR-VPM 88 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H+ + Y L++ G+ + IC+Q+E A K G + V+R + +++TPGTLT+D Sbjct: 89 TGVPHHSLDRYSAMLVEKGYAVVICDQVEDAAIAAKEGRQ--VKREITKILTPGTLTDDG 146 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIF-KISTSNHDRLISDIMRIDPREIIFSEK 202 +L P +N+L AV W +A+ DISTG F + ++N ++L +++R+ P EI+ Sbjct: 147 MLKPRQNNFLAAVVIAGEHWGLAYTDISTGEFLTVQSTNLEQLNLELLRLQPSEILIPTH 206 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVF---------FDHSISESRIADYYNITTVDTFGSFS 253 + E ++ + P F F ++ R+ + + +++ G + Sbjct: 207 SQNVGTMLRPGERSEHLPESLPPSFCYSLRKQLPFTLPEAKQRLLQKFKVRSLEGMGCEN 266 Query: 254 -QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSRE 311 + AA + Y+++TQ N + + L +D R NLEI++T+ G+ Sbjct: 267 LPLGVRAAGGLLEYLEETQKENSVPLEPLHTYALSDFLILDHQTRRNLEIIQTVRDGNFH 326 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 SLL ID + T GGR PL D I R D+I ++N L +Q++L+ Sbjct: 327 GSLLWAIDKTNTAMGGRALRRWFLQPLLDIKAIRARHDTIQELVENNSLRQSLQQLLRQI 386 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSL 431 D+ R R G + + + D + + N+ L+ P ++ L+ +P L Sbjct: 387 YDIERLAGRAGSGTATARQLVSLADSLEKLPQLANVALQGRSP-----YLKALQNVPPVL 441 Query: 432 EK---TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 +K + + L D+ P ++GG +R G + LD R + ++ +A+L+ T I Sbjct: 442 DKLGQNIHAYLVDEPPIHLKEGGLIRPGINDELDRMRGMASGDQQWLANLEATERTRTGI 501 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 NLK+ +N GY+I +T S + D +I +QT++N R++T EL + E RI Sbjct: 502 SNLKVGYNKAFGYYISITKSKIDQVPHD------YIRKQTLTNEERYSTEELKEREIRIL 555 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 A +E + F L ++ EQ+E + N S+ +A D+ LA +A YCRP + Sbjct: 556 TAREDLNQLEYDIFTGLRESVGEQAEVIRNISRAVAAADVLCGLAEVAVYYGYCRPTMVE 615 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 S + +GRHP+VEK+L + F+ N L N L +LTGPN GKS +LR Sbjct: 616 SREIKIVEGRHPVVEKSL---PAGFFVPNSAFLGSEESVNRPDLIILTGPNASGKSCYLR 672 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q LI +MAQ GS+VPA A +GI +++F+RVG+ D+LA+G+STFMVEM ETA+ILN AT Sbjct: 673 QVGLIQLMAQTGSFVPAKSASLGICNRIFTRVGAVDDLATGQSTFMVEMNETANILNHAT 732 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA 788 +S V+LDEIGRGTAT DGLSIAW+ EYL R R + ATH+HE+ +L+ L N Sbjct: 733 PKSLVLLDEIGRGTATFDGLSIAWSVAEYLANEIRARTIFATHYHEMNELASILPNVANY 792 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 + V + + IIFLH+V PG AD SYGI+ G+LAGLP +VI RA +++ EK Sbjct: 793 QVTVKELPDQIIFLHQVQPGGADKSYGIEAGRLAGLPPSVIERARQVMRQIEK 845 >gi|328957012|ref|YP_004374398.1| DNA mismatch repair protein MutS [Carnobacterium sp. 17-4] gi|328673336|gb|AEB29382.1| DNA mismatch repair protein MutS [Carnobacterium sp. 17-4] Length = 874 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 294/831 (35%), Positives = 475/831 (57%), Gaps = 59/831 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY+ IK+ PD+ +FYR+GDFYELF +DA+ AS+ L +TLT R ++ + IPMCG Sbjct: 8 TPMMEQYLGIKANYPDAFLFYRLGDFYELFNEDAIKASQLLEVTLTSRNRNADEPIPMCG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A YI LI+ G+++AICEQ+E P AK +V+R VV+L+TPGT + + + Sbjct: 68 VPYHAAKGYIDSLIERGYKVAICEQVEDPKTAK-----GMVKREVVQLITPGTAMDTKSM 122 Query: 146 SPTDSNYLMAVARIRTE-WAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEKE 203 +NYL A+ T+ + +A+ D+STG K + N + ++S++M + +E++F KE Sbjct: 123 DAKTNNYLAAIMGTNTDHYHLAYADLSTGELKTTKLNSLEAVMSELMSLKAKEVVF--KE 180 Query: 204 LSHAEYKSLFET-LGNVAVAQPNVF----FDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + ++ ET LG + Q + F + SE +D ++ + Sbjct: 181 AMEVDVQAELETKLGIMVSTQKEMIERAEFSYLTSEIENSDLIDVVKL------------ 228 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSL 314 SY+ TQ K +G+ ++ ++ S L +D ++ NLE++ ++ +G ++ +L Sbjct: 229 ----LFSYLYVTQ---KRNLGHLQKVEVYSPTNYLKMDHYSKHNLELVSSIRTGQKKGTL 281 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D + T GGRL + I PL +I R + + I + + + L D+ Sbjct: 282 LWLLDETKTAMGGRLLKQWIDRPLIQEQQIMMRQNIVESLINHFFERTDLNEALTRVYDL 341 Query: 375 PRSLSRLKIGRGEPKDIAVIRDG---IRSGINILNLFLKNDLPEELRGAVEKLKKLPQSL 431 R R+ G +D+ ++ I I I+ L K + + + +L ++P+ + Sbjct: 342 ERLAGRVAFGNVNGRDLIQLQTSLLQIPQLIEIIQLMNKGEWDQ----LITELDQVPEVV 397 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + + + ++ P +DGG ++DG + LD R K+ IA L+ + T I+NL Sbjct: 398 Q-LIDQAIDENAPLSIKDGGVIKDGFNEQLDIYRDAMRNGKKWIAQLEAEEKAATGIRNL 456 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 KI +N GY+IE+T ++ + L + R+ +QT++N RF T EL + E I A Sbjct: 457 KIGYNRIFGYYIEITKANLANL-----PEGRYERKQTLANAERFITPELKEKEVLILEAE 511 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID-NST 610 ++L+E F + I + E L N ++ +A ID+ + A ++++ +Y RP++ NS Sbjct: 512 EKSMLLEYTLFAEVRETIKDYIERLQNLAKTVAAIDVLQSFATISEKYHYTRPLMAANSQ 571 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 + +GRHP+VEK L QQ+ ++ N ++ N+ + L+TGPNM GKST++RQ Sbjct: 572 EISLIEGRHPVVEKVLGQQT---YVPNSVEMDQDNE-----ILLITGPNMSGKSTYMRQL 623 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 AL VIMAQMG +VPA A + I D++F+R+G+AD+L +G+STFMVEM+E L A+ Sbjct: 624 ALTVIMAQMGCFVPADKAIMPIFDQIFTRIGAADDLIAGQSTFMVEMMEANEALRYASKN 683 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S ++ DEIGRGTAT DG+++A A IEY+HE + L +TH+HELT L + L R N + Sbjct: 684 SLILFDEIGRGTATYDGMALAEAIIEYIHENVHAKTLFSTHYHELTVLDERLTRLTNVHV 743 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 + ++FLHK++PG AD SYGIQV KLAGLP+ ++SRA IL+ E+ Sbjct: 744 GAVEEEGELVFLHKMLPGPADKSYGIQVAKLAGLPDDLLSRAAVILEQLEQ 794 >gi|329728032|gb|EGG64476.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis VCU144] Length = 873 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 318/906 (35%), Positives = 487/906 (53%), Gaps = 88/906 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY++IKS D L+F+R+GDFYE+FFDDA ASR L ITLTKR IPMCG Sbjct: 5 TPMMQQYLKIKSEYDDCLLFFRLGDFYEMFFDDAKEASRVLEITLTKRDAKKENPIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A++YI+ LI G+++AICEQ+E P + K +VRR VVR++TPGT+ + + Sbjct: 65 VPYHSADNYIETLINKGYKVAICEQMEDP-----KQTKGMVRREVVRIITPGTVMDQNGM 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204 +NY+++ E+ + + D+STG K++ + L+++I I+P EI+ + L Sbjct: 120 DEKKNNYILSFIE-NEEFGLCYCDVSTGELKVTHFKDTATLLNEITTINPNEIVIKQA-L 177 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISE----------SRIADYYNITTVDTFGSFSQ 254 S + + + V + D+ +++ + DY + T S Sbjct: 178 SEELKRQINMITETITVREDISDEDYDMNQLTHQLMHDTTQLLLDYIHHTQK---RDLSH 234 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQS 313 +E+ AA+ Y+K +D A+ NLE+ ++ S++ + Sbjct: 235 IEEVIEYAAVDYMK-----------------------MDYYAKRNLELTESIRLKSKKGT 271 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T G R + I PL + +IN RL+ + F+ I + ++ L D Sbjct: 272 LLWLMDETKTPMGARRLKQWIDRPLINKQQINDRLNIVEEFMDRFIERDTLRNHLNQVYD 331 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R + R+ G +D+ ++ I +I L N+L + ++L+ L L+ Sbjct: 332 IERLVGRVSYGNVNARDLIQLKHSISEIPHIKALL--NELGAQTTTQFKELEPLDDLLQ- 388 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L L ++ P +DGG ++G +A LDE K +A LQ K E T IK+LKI Sbjct: 389 ILEESLVEEPPISIKDGGLFKNGFNAQLDEYLEASKNGKTWLAELQAKERERTGIKSLKI 448 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GYFIE+T ++ + + + +R +QT+SN RF T EL + E+ I A + Sbjct: 449 SFNKVFGYFIEITRANLNNFQPEAFGYNR---KQTLSNAERFITDELKEKEDIILGAEDK 505 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 A+ +E E F L I +E L +++I+ +D + A +A++ NY +P + Sbjct: 506 AVELEYELFVKLREHIKTYTERLQKQAKIISELDCLQSFAEIAQKYNYVKPTFSDDKVLH 565 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +++ RHP+VE+ + ++ NDC L + ++L+TGPNM GKST++RQ A+I Sbjct: 566 LENSRHPVVERVM---DYNDYVPNDCHLD-----DETFIYLITGPNMSGKSTYMRQVAII 617 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 IMAQMG+YVP A + I D++F+R+G+AD+L SG+STFMVEM+E L AT S + Sbjct: 618 SIMAQMGAYVPCDSATLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTYATENSLI 677 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 I DEIGRGT+T DGL++A A IEY+ +T+ + L +TH+HELT L + LK N + + Sbjct: 678 IFDEIGRGTSTYDGLALAQAMIEYVSQTSHAKTLFSTHYHELTSLDQMLKCLKNVHVAAN 737 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE-----KLYHHNQK 848 + +IFLHKV G D SYGIQV KLA LPN VI RA IL FE +L H N Sbjct: 738 EYQGELIFLHKVKDGAVDDSYGIQVAKLADLPNEVIDRAQVILNAFEQKPSYQLSHEN-T 796 Query: 849 DMRLYYPE-------------IQTKESKNNLSK---------NDKLFVE-KIKCLNLDEM 885 D + P I+T S +N + N + VE +I+ LNL M Sbjct: 797 DNQQTVPSYNDFGRTEEEQSVIETHTSNHNYEQATFDLFDGYNQQSEVECQIRELNLSNM 856 Query: 886 SPLTAL 891 +PL AL Sbjct: 857 TPLEAL 862 >gi|251810727|ref|ZP_04825200.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis BCM-HMP0060] gi|251805887|gb|EES58544.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis BCM-HMP0060] Length = 877 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 318/906 (35%), Positives = 487/906 (53%), Gaps = 88/906 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY++IKS D L+F+R+GDFYE+FFDDA ASR L ITLTKR IPMCG Sbjct: 9 TPMMQQYLKIKSEYDDCLLFFRLGDFYEMFFDDAKEASRVLEITLTKRDAKKENPIPMCG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A++YI+ LI G+++AICEQ+E P + K +VRR VVR++TPGT+ + + Sbjct: 69 VPYHSADNYIETLINKGYKVAICEQMEDP-----KQTKGMVRREVVRIITPGTVMDQNGM 123 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204 +NY+++ E+ + + D+STG K++ + L+++I I+P EI+ + L Sbjct: 124 DEKKNNYILSFIE-NEEFGLCYCDVSTGELKVTHFKDTATLLNEITTINPNEIVIKQA-L 181 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISE----------SRIADYYNITTVDTFGSFSQ 254 S + + + V + D+ +++ + DY + T S Sbjct: 182 SEELKRQINMITETITVREDISDEDYDMNQLTHQLMHDTTQLLLDYIHHTQK---RDLSH 238 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQS 313 +E+ AA+ Y+K +D A+ NLE+ ++ S++ + Sbjct: 239 IEEVIEYAAVDYMK-----------------------MDYYAKRNLELTESIRLKSKKGT 275 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T G R + I PL + +IN RL+ + F+ I + ++ L D Sbjct: 276 LLWLMDETKTPMGARRLKQWIDRPLINKQQINDRLNIVEEFMDRFIERDTLRNHLNQVYD 335 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R + R+ G +D+ ++ I +I L N+L + ++L+ L L+ Sbjct: 336 IERLVGRVSYGNVNARDLIQLKHSISEIPHIKALL--NELGAQTTTQFKELEPLDDLLQ- 392 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L L ++ P +DGG ++G +A LDE K +A LQ K E T IK+LKI Sbjct: 393 ILEESLVEEPPISIKDGGLFKNGFNAQLDEYLEASKNGKTWLAELQAKERERTGIKSLKI 452 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GYFIE+T ++ + + + +R +QT+SN RF T EL + E+ I A + Sbjct: 453 SFNKVFGYFIEITRANLNNFQPEAFGYNR---KQTLSNAERFITDELKEKEDIILGAEDK 509 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 A+ +E E F L I +E L +++I+ +D + A +A++ NY +P + Sbjct: 510 AVELEYELFVKLREHIKTYTERLQKQAKIISELDCLQSFAEIAQKYNYVKPTFSDDKVLH 569 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +++ RHP+VE+ + ++ NDC L + ++L+TGPNM GKST++RQ A+I Sbjct: 570 LENSRHPVVERVM---DYNDYVPNDCHLD-----DETFIYLITGPNMSGKSTYMRQVAII 621 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 IMAQMG+YVP A + I D++F+R+G+AD+L SG+STFMVEM+E L AT S + Sbjct: 622 SIMAQMGAYVPCDSATLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTYATENSLI 681 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 I DEIGRGT+T DGL++A A IEY+ +T+ + L +TH+HELT L + LK N + + Sbjct: 682 IFDEIGRGTSTYDGLALAQAMIEYVAQTSHAKTLFSTHYHELTSLDQMLKCLKNVHVAAN 741 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE-----KLYHHNQK 848 + +IFLHKV G D SYGIQV KLA LPN VI RA IL FE +L H N Sbjct: 742 EYQGELIFLHKVKDGAVDDSYGIQVAKLADLPNEVIDRAQVILNAFEQKPSYQLSHEN-T 800 Query: 849 DMRLYYPE-------------IQTKESKNNLSK---------NDKLFVE-KIKCLNLDEM 885 D + P I+T S +N + N + VE +I+ LNL M Sbjct: 801 DNQQTVPSYNDFGRTEEEQSVIETHTSNHNYEQATFDLFDGYNQQSEVECQIRELNLSNM 860 Query: 886 SPLTAL 891 +PL AL Sbjct: 861 TPLEAL 866 >gi|162451401|ref|YP_001613768.1| DNA mismatch repair protein [Sorangium cellulosum 'So ce 56'] gi|189083194|sp|A9GIM9|MUTS_SORC5 RecName: Full=DNA mismatch repair protein mutS gi|161161983|emb|CAN93288.1| DNA mismatch repair protein [Sorangium cellulosum 'So ce 56'] Length = 918 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 319/927 (34%), Positives = 495/927 (53%), Gaps = 89/927 (9%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TP+MRQY + K+++PD+++F+RMGDFYE+F DDA+L SR L +TLT R K + P Sbjct: 11 KKLTPVMRQYEDAKALHPDAILFFRMGDFYEMFNDDAVLVSRALNLTLTSRNKGEPDESP 70 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H A+ YI +L+ +GH++AICEQ P + K LV R VVR+VTPG +TE Sbjct: 71 MAGVPHHAAHGYIARLLALGHKVAICEQCGDPSKIK-----GLVPRQVVRVVTPGLVTET 125 Query: 143 QLLSPTDSNYLMAV---ARIRTE-------WAIAWIDISTG-IFKISTSNHDRLISDIMR 191 + L ++YL AV R + + ++ +D+STG + S + L++++ R Sbjct: 126 EQLDARANHYLAAVDGGGAPRGDALGAGGPYGLSLLDLSTGELSATSVPDAATLLAELAR 185 Query: 192 IDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS 251 DPRE + + ++L + + + D + + +A + ++ + Sbjct: 186 ADPREALIA-RDLPDVRAAA------ASLACRAALRDDEELDSAHVASILDDAAIEPISA 238 Query: 252 FSQVEKT-AAAAAISYIKKTQMVNKPTIGYPER----EDIQSTLFIDSAARSNLEILRTL 306 + E A A + + P P R D TL ID A+++LE++R Sbjct: 239 AALAEHPLPAVRAAARALRFARRCSPGARIPVRRIAPHDTSGTLRIDETAQAHLELVRAA 298 Query: 307 SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK 366 G R +LL ID ++T G RL R+ SPL D I RLD + F+ +P +++ Sbjct: 299 DGGRRGTLLDVIDCTVTPGGARLLRRRLLSPLADLAGIRRRLDEVELFVSHPRARGELRQ 358 Query: 367 ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG----------IRSGINILNLFLKNDLPEE 416 L D+ R R +G P+D+ ++RDG +RS ++ ++D Sbjct: 359 ALGGVGDLERLSVRALLGEATPRDLGLLRDGLTAAPAAIAAVRSIPDLGKAAARSDDGAA 418 Query: 417 LRG----------AVEKLKKLPQSLE------KTLSSMLSDDLPTFKRDGGFLRDGADAS 460 RG E L +L+ L++ L + P R+GG R+G D Sbjct: 419 ARGKDGAAAGSSSGSEPLLAEAAALDVVADVCAELTAALIERPPPNTREGGIFREGYDKE 478 Query: 461 LDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESK 520 LD+ R + + +I +L+ K +T +L++K+ G++IEVT + + + + Sbjct: 479 LDDARGVEKNATELILALEAKLRTQTGAPSLRVKYTRVFGWYIEVTRAHIAKVPET---- 534 Query: 521 DRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSES-LDNA 579 F +QT++ R+T+ EL +L ++I +A AL E F+ L A++ +SE L Sbjct: 535 --FRRKQTVATGERYTSDELDELADKIEHAGARALERETALFDRL-RALVAKSEGRLRAL 591 Query: 580 SQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDC 639 ++ +A D++ ALA +A +Y RP + ++DGRHP+VE+ ++ F+ ND Sbjct: 592 ARKLAAWDVAAALADVAHRNDYVRPHVTAGEALAIRDGRHPVVER---YAAAGHFVPNDT 648 Query: 640 DLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSR 699 L D + +LWL+TGPNM GKST +RQ ALIV++AQMGSYVPA A IG+VD++ SR Sbjct: 649 RL----DLSGERLWLITGPNMAGKSTLMRQVALIVVLAQMGSYVPAREAEIGLVDRILSR 704 Query: 700 VGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLH 759 VG++DN+A G STFMVEM ETA IL AT +S VILDEIGRGT+T DGL+IAWA E+L Sbjct: 705 VGASDNVARGESTFMVEMRETAEILRDATRRSLVILDEIGRGTSTYDGLAIAWAVAEHLF 764 Query: 760 ETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVG 819 + CR L ATH+HELT+LS N ++ + + +IFLHK+ G A SYG+ V Sbjct: 765 DAIGCRALFATHYHELTELSARAPGIANYSVAAREHGDDVIFLHKLEAGPASRSYGVAVA 824 Query: 820 KLAGLPNTVISRAYDILKTFE---KLYHHNQKDMR-----------LYYPEIQTKESKNN 865 +LAG+P V++RA IL T E L +R L+ P ++ Sbjct: 825 RLAGVPEGVLARARAILATLESGAALPGGKHASLRGRTRGGAAQLDLFAP------AQAA 878 Query: 866 LSKNDKLFVEKIKCLNLDEMSPLTALK 892 + +E ++ +++D ++PL AL+ Sbjct: 879 VPPEQSAVIETLRAVDVDRLAPLDALR 905 >gi|295097314|emb|CBK86404.1| DNA mismatch repair protein MutS [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 853 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 305/892 (34%), Positives = 483/892 (54%), Gaps = 57/892 (6%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +N + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 DNFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPHHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDGKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE +L E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAE-TALIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLIG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y+K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYVKDTQRTALPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGMENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ ++ + R +I +Q +L+ D Sbjct: 291 LASVLDSTVTPMGSRMLKRWLHMPIRNTDTLIGRQQTIAALQDR---YTDLQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP---QS 430 + R L+RL + P+D+A +R + L+ L E V+KL++ Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQLPE-----LRAQLGEIDSAPVQKLRETMGEFTE 402 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L + L + D P RDGG + G + LDE R+L D + + L+++ E + Sbjct: 403 LRELLERAIIDAPPVLVRDGGVIAPGYNEELDEWRALADGATDYLDKLEIRERERLGLDT 462 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ +N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + Sbjct: 463 LKVGYNAVHGYYIQISRGQSHL------APIHYVRRQTLKNAERYIIPELKEYEDKVLTS 516 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 AL +E + ++ L + ++ L ++ +A +D+ + LA A NY P + Sbjct: 517 KGKALALEKQLYDELFDILLPHLADLQLSAAALAELDVLVNLAERADTLNYTCPTFTDKP 576 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNMGGKST++RQ Sbjct: 577 GIRITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQT 627 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT Sbjct: 628 ALIALLAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEN 687 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V++DE+GRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L Sbjct: 688 SLVLMDEVGRGTSTYDGLSLAWACAESLANKIKALTLFATHYFELTQLPEKMEGVANVHL 747 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH---NQ 847 + + I F+H V G A SYG+ V LAG+P VI RA L+ E L + Q Sbjct: 748 DALEHGDTIAFMHTVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESLSPNAAATQ 807 Query: 848 KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 D T+ S + + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 808 ID--------GTQMSLLAVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|332976873|gb|EGK13695.1| DNA mismatch repair protein MutS [Desmospora sp. 8437] Length = 890 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 295/826 (35%), Positives = 464/826 (56%), Gaps = 40/826 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+ IK+ +PD+ +F+R+GDFYE+FF+DA A+ L ITLT R G+ IPMCG Sbjct: 25 TPMIQQYLSIKADHPDAFLFFRLGDFYEMFFEDARKAAEELEITLTSRDGG-GERIPMCG 83 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+ + YI +LI G+++AICEQ+E P AK +VRR VVR++TPGT+ E+++L Sbjct: 84 VPFHSVDVYISRLIGKGYKVAICEQVEDPATAK-----GVVRREVVRVITPGTVMEEKML 138 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD--RLISDIMRIDPREIIFSE-- 201 + ++N+L A+ R R +A+A D+STG F ++ D R+I ++ P+E++ + Sbjct: 139 TERENNFLAALTRQREHYALAAADLSTGEFYVTDVAGDGARVIDELAAYQPKEVLLAPCL 198 Query: 202 -KELSHAEYK-----SLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQV 255 KE S E ++ G + P + E D +TT + Sbjct: 199 GKETSLLEELRLRLGAVITVTGEDELQSPEER-SRMLGEHFPEDREQLTT--------PI 249 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSL 314 ++ A +SY+++TQ + R D + + +D +AR LE+ R+L G +E +L Sbjct: 250 QEEVACLLLSYLQRTQKRGLSHMNRIRRYDAEQFMVLDVSARQTLELTRSLREGRKEGTL 309 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 +D + T G RL + + PL D +I R + I + IL+ I++ LK D+ Sbjct: 310 YGLLDRTATAMGSRLLKKWLDKPLLDLNEIRRRQEEIQALTDHLILLEEIREQLKGVYDL 369 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R +R+ G +D+ +R + I L L L E L L + +E T Sbjct: 370 ERLCARIAYGSANGRDLISLRRSLEK-IPDLKRCLSETNASALVSVAEGLDPLQEVVELT 428 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 S ++D+ P R+G ++DG D LD R ++ + I L+ + E T I++LK+ Sbjct: 429 AKS-IADEAPVSVREGNLIKDGYDEELDRLREVQRDGRGWITRLEQREREATGIRSLKVG 487 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N GY+IEVT ++ L + R+ +QT++N RF T EL + E I A + Sbjct: 488 FNKVFGYYIEVTKANLRHL-----PEGRYQRKQTLANAERFVTPELKERERLILEAEEKS 542 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E + F + + E+ + + +A +D +LA ++ + Y RP ++ + Sbjct: 543 VELEYQLFTRVRERVAEEIPRIQMLADRVARLDALHSLAAVSGKYGYVRPDVNREGRIRI 602 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 GRHP+VE ++ F+ ND + D+ +L L+TGPNM GKST++RQ ALI Sbjct: 603 TGGRHPVVEAATREGE---FVPNDTRM----DQEEHQLLLITGPNMAGKSTYMRQVALIT 655 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 +MAQ+G +VPA A IGIVD++F+R+G+AD+L GRSTFMVEM ET L QAT++S ++ Sbjct: 656 LMAQIGCFVPAQRAEIGIVDRIFTRIGAADDLVGGRSTFMVEMDETRLALAQATSRSLIL 715 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDE+GRGT+T DG+++A A +EY+H+ + L +TH+HELT L L R N + + Sbjct: 716 LDEVGRGTSTYDGMALAHAIVEYIHDHVGAKTLFSTHYHELTHLEADLPRVVNLHARCVE 775 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 ++FLH++ PG AD SYGI V +LAG+P VI RA +L+T E Sbjct: 776 KEGEVVFLHRMEPGGADRSYGIHVAQLAGMPAEVIRRARSLLETLE 821 >gi|332291445|ref|YP_004430054.1| DNA mismatch repair protein MutS [Krokinobacter diaphorus 4H-3-7-5] gi|332169531|gb|AEE18786.1| DNA mismatch repair protein MutS [Krokinobacter diaphorus 4H-3-7-5] Length = 863 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 307/887 (34%), Positives = 486/887 (54%), Gaps = 41/887 (4%) Query: 29 MRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPV 88 M+QY IK+ PD+L+ +R+GDFYE F +DA+ A+ L ITLT R G + G P Sbjct: 1 MQQYNGIKTKYPDALLLFRVGDFYETFGEDAVKAAAILNITLTSRNNG-GDRTELAGFPH 59 Query: 89 HTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPT 148 H+ N Y+ KL+K G R+AIC+Q+E P + KK +V+R V LVTPG D +LS Sbjct: 60 HSLNTYLPKLVKAGCRVAICDQLEDPKQTKK-----IVKRGVTELVTPGVAMNDDILSAK 114 Query: 149 DSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHAE 208 +N+L AV + + +A++D+STG + + + + + P E++ +K+ Sbjct: 115 TNNFLGAVFFNKEKVGVAFLDVSTGEYLTAQGDIAYVDKLLQNFAPSELLVCKKQ----- 169 Query: 209 YKSLFETLGN--VAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT-AAAAAIS 265 K+ E G+ Q + F + + ++++ ++ FG E AA AA+ Sbjct: 170 KKAFLEAYGSDYHTFYQEDWVFHIDYATESLHKHFDVNSLKGFGVEHLSEGVVAAGAALH 229 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y+ +TQ I R +++D NLE+ + SG + +L+ ID + + Sbjct: 230 YLGETQHHKLQHITRIRRIAADDYVWMDRFTIRNLELYNSASGVKAITLIDIIDKTTSAM 289 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 GGRL +A PL +I R D ++F N + + +Q +K D+ R +S++ G+ Sbjct: 290 GGRLLKRWLALPLKRLDEIERRHDVVSFLSDNGEIFDKMQSNIKKIGDLERLISKVATGK 349 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPT 445 P+++ +++ + + + I L L D E L E+L+ L + L ++ P Sbjct: 350 ISPREVIQLKNSLEAIVPIKGLALNTD-NESLNIIGEQLQDCV-VLRDKIKETLKEEAPV 407 Query: 446 FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEV 505 GG + G LDE R L K + + + E T I +LKI NN GY+IEV Sbjct: 408 SIIKGGAIAAGFHNELDELRVLSQGGKDYLEKMLARETERTGITSLKIASNNVFGYYIEV 467 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEIL 565 ++ + ++ +I +QT+ N R+ T EL + E +I A IE + F L Sbjct: 468 RNTHRDKVPEE------WIRKQTLVNAERYITEELKEYEGKILGAEERIQAIEQQLFAAL 521 Query: 566 SN---AIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 N + I Q ++ NASQ IA +D + LA+E NY RP +D S +K+GRHP++ Sbjct: 522 VNWMSSFIPQVQA--NASQ-IAQLDCLLGFTQLARENNYVRPTLDESQAIDIKEGRHPVI 578 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 EK L + ++ ND L D ++ ++TGPNM GKS LRQ ALIV++AQMGS+ Sbjct: 579 EKQLPL--GEAYVTNDVYL----DSGDQQMIMITGPNMSGKSAILRQTALIVLLAQMGSF 632 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA AHIG+VDK+F+RVG++DN++ G STFMVEM ETASILN +++S V+LDEIGRGT Sbjct: 633 VPAQAAHIGVVDKIFTRVGASDNISMGESTFMVEMNETASILNNLSDRSLVLLDEIGRGT 692 Query: 743 ATLDGLSIAWATIEYLHE-TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 +T DG+SIAWA E+LHE R + L ATH+HEL ++ ++ +R N + V + + ++F Sbjct: 693 STYDGISIAWAISEFLHEHPGRPKTLFATHYHELNEMCETFERIKNYNVSVKELKDNVLF 752 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKE 861 L K++PG + HS+GI V K+AG+P V+ RA +++ EK H +++ E +E Sbjct: 753 LRKLVPGGSAHSFGIHVAKMAGMPQQVLRRATKMMEKLEK--SHGSEELTGKLKEAGEEE 810 Query: 862 SKNNLSKNDKLFVEKIK----CLNLDEMSPLTALKTLYAVKAWTLEK 904 + + D +E IK +++D ++P+ AL L +K ++K Sbjct: 811 MQLSFFNLDDPLLEDIKEEILHIDIDTLTPVEALMKLNEIKRMLVKK 857 >gi|82750895|ref|YP_416636.1| DNA mismatch repair protein MutS [Staphylococcus aureus RF122] gi|123549102|sp|Q2YXR9|MUTS_STAAB RecName: Full=DNA mismatch repair protein mutS gi|82656426|emb|CAI80846.1| DNA mismatch repair protein [Staphylococcus aureus RF122] Length = 872 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 319/913 (34%), Positives = 491/913 (53%), Gaps = 89/913 (9%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPMM+QY++IKS D L+F+R+GDFYE+F++DA ASR L ITLTKR I Sbjct: 1 MSNVTPMMQQYLKIKSEYQDCLLFFRLGDFYEMFYEDAKEASRVLEITLTKRDAKKENPI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A+ YI L+ G+++AICEQ+E P + K +VRR VVR+VTPGT+ E Sbjct: 61 PMCGVPYHSADSYIDTLVNNGYKVAICEQMEDP-----KQTKGMVRREVVRIVTPGTVME 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD-RLISDIMRIDPREIIFS 200 + +NY+++ + E A+++ D+STG K++ N + L+++I I+P E++ + Sbjct: 116 QGGVDDKQNNYILSFVMNQPEIALSYCDVSTGELKVTHFNDEATLLNEITTINPNEVVIN 175 Query: 201 EKELSH--------AEYKSLFETLGN----VAVAQPNVFFDHSISESRIADYYNITTVDT 248 + H E ++ ETL + V + + F + + DY + T Sbjct: 176 DNISDHLKRQINMVTETITVRETLSSEIYSVNQTEHKLMFQAT---QLLLDYIHHTQK-- 230 Query: 249 FGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS- 307 S +E AAI Y+K +D A+ NLE+ ++ Sbjct: 231 -RDLSHIEDVVQYAAIDYMK-----------------------MDFYAKRNLELTESIRL 266 Query: 308 GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI 367 S++ +LL +D + T G R + I PL +I RLD ++ F + I + ++ Sbjct: 267 KSKKGTLLWLMDETKTPMGARRLKQWIDRPLISKEQIEARLDIVDEFSAHFIERDTLRTY 326 Query: 368 LKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL 427 L D+ R + R+ G +D+ ++ I NI L N + ++ V +L+ L Sbjct: 327 LNQVYDIERLVGRVSYGNVNARDLIQLKHSISEIPNIKALL--NSMNQDTLVQVNQLEPL 384 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 L+ L L ++ P +DGG + G + LDE K +A LQ K + T Sbjct: 385 DDLLD-ILEQSLVEEPPISVKDGGLFKVGFNMQLDEYLEASKNGKTWLAELQAKERQRTG 443 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 IK+LKI N GYFIE+T ++ L+ S+ ++ +QT+SN RF T EL + E+ I Sbjct: 444 IKSLKISFNKVFGYFIEITRAN---LQNFEPSEFGYMRKQTLSNAERFITDELKEKEDII 500 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 A + A+ +E + F L + + +E L +++I+ +D + A +A++ NY RP Sbjct: 501 LGAEDKAIELEYQLFVQLREEVKKYTERLQQQAKIISELDCLQSFAEIAQKYNYTRPSFS 560 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 + + + RHP+VE+ + ++ N+C L N ++L+TGPNM GKST++ Sbjct: 561 ENKTLELVESRHPVVERVM---DYNDYVPNNCRLD-----NETFIYLITGPNMSGKSTYM 612 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ A+I IMAQMG+YVP A + I D++F+R+G+AD+L SG+STFMVEM+E L A Sbjct: 613 RQVAIISIMAQMGAYVPCKEAVLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTYA 672 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 T S +I DEIGRGT+T DGL++A A IEY+ ET+ + L +TH+HELT L ++L N Sbjct: 673 TEDSLIIFDEIGRGTSTYDGLALAQAMIEYVAETSHAKTLFSTHYHELTTLDQALPSLKN 732 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE------- 840 + ++ +IFLHKV G D SYGIQV KLA LP VISRA IL FE Sbjct: 733 VHVAANEYKGELIFLHKVKDGAVDDSYGIQVAKLADLPEKVISRAQVILSEFEASADKKS 792 Query: 841 -----KLYHHNQKDMRLYYPEIQTKESKNNLSKND------KLF-------VE-KIKCLN 881 K+ N+ ++ + +E+ + LS+ D LF +E +IK LN Sbjct: 793 SISNLKMV-ENEPEINQENSNLSVEETTDTLSQKDFEQASFDLFENDQESEIELQIKNLN 851 Query: 882 LDEMSPLTALKTL 894 L M+P+ AL L Sbjct: 852 LSNMTPIEALVKL 864 >gi|258423864|ref|ZP_05686749.1| DNA mismatch repair protein MutS [Staphylococcus aureus A9635] gi|257845893|gb|EEV69922.1| DNA mismatch repair protein MutS [Staphylococcus aureus A9635] Length = 872 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 324/913 (35%), Positives = 492/913 (53%), Gaps = 89/913 (9%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPMM+QY++IKS D L+F+R+GDFYE+F++DA ASR L ITLTKR I Sbjct: 1 MSNVTPMMQQYLKIKSEYQDCLLFFRLGDFYEMFYEDAKEASRVLEITLTKRDAKKENPI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A+ YI L+ G+++AICEQ+E P + K +VRR VVR+VTPGT+ E Sbjct: 61 PMCGVPYHSADSYIDTLVNNGYKVAICEQMEDP-----KQTKGMVRREVVRIVTPGTVME 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD-RLISDIMRIDPREIIFS 200 + +NY+++ + E A+++ D+STG K++ N + L+++I I+P E++ + Sbjct: 116 QGGVDDKQNNYILSFVMNQPEIALSYCDVSTGELKVTHFNDEATLLNEITTINPNEVVIN 175 Query: 201 EKELSH--------AEYKSLFETLGN--VAVAQPNVFFDHSI---SESRIADYYNITTVD 247 + H E ++ ETL + +V Q +H + + + DY + T Sbjct: 176 DNISDHLKRQINMVTETITVRETLSSEIYSVNQT----EHKLMYQATQLLLDYIHHTQK- 230 Query: 248 TFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS 307 S +E AAI Y+K +D A+ NLE+ ++ Sbjct: 231 --RDLSHIEDVVQYAAIDYMK-----------------------MDFYAKRNLELTESIR 265 Query: 308 -GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK 366 S++ +LL +D + T G R + I PL +I RLD ++ F + I + ++ Sbjct: 266 LKSKKGTLLWLMDETKTPMGARRLKQWIDRPLISKEQIEARLDIVDEFSAHFIERDTLRT 325 Query: 367 ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK 426 L D+ R + R+ G +D+ ++ I NI L N + ++ V +L+ Sbjct: 326 YLNQVYDIERLVGRVSYGNVNARDLIQLKHSISEIPNIKALL--NSMNQDTLVQVNQLEP 383 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 L L+ L L ++ P +DGG + G + LDE K +A LQ K + T Sbjct: 384 LDDLLD-ILEQSLVEEPPISVKDGGLFKVGFNMQLDEYLEASKNGKTWLAELQAKERQRT 442 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 IK+LKI N GYFIE+T ++ L+ S+ ++ +QT+SN RF T EL + E+ Sbjct: 443 GIKSLKISFNKVFGYFIEITRAN---LQNFEPSEFGYMRKQTLSNAERFITDELKEKEDI 499 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 I A + A+ +E + F L + + +E L +++I+ +D + A +A++ NY RP Sbjct: 500 ILGAEDKAIELEYQLFVQLREEVKKYTERLQQQAKIISELDCLQSFAEIAQKFNYTRPSF 559 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 + + + RHP+VE+ + ++ NDC L N ++L+TGPNM GKST+ Sbjct: 560 SENKTLELVESRHPVVERVM---DYNDYVPNDCRLD-----NETFIYLITGPNMSGKSTY 611 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ A+I IMAQMG+YVP A + I D++F+R+G+AD+L SG+STFMVEM+E L Sbjct: 612 MRQVAIISIMAQMGAYVPCKEAVLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTY 671 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT S +I DEIGRGT+T DGL++A A IEY+ ET+ + L +TH+HELT L ++L Sbjct: 672 ATEDSLIIFDEIGRGTSTYDGLALAQAMIEYVAETSHAKTLFSTHYHELTTLDQALPSLK 731 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE----KL 842 N + ++ +IFLHKV G D SYGIQV KLA LP VISRA IL FE K Sbjct: 732 NVHVAANEYKGELIFLHKVKDGAVDDSYGIQVAKLADLPEKVISRAQVILSEFEASAGKK 791 Query: 843 YHHNQKDMRLYYPEIQ-------TKESKNNLSKND------KLF-------VE-KIKCLN 881 + M PEI +E+ + LS+ D LF +E +IK LN Sbjct: 792 SSISNLKMVENEPEINQENSNLCVEETTDTLSQKDFEQASFDLFENDQESEIELQIKNLN 851 Query: 882 LDEMSPLTALKTL 894 L M+P+ AL L Sbjct: 852 LSNMTPIEALVKL 864 >gi|109899568|ref|YP_662823.1| DNA mismatch repair protein MutS [Pseudoalteromonas atlantica T6c] gi|123360454|sp|Q15QR9|MUTS_PSEA6 RecName: Full=DNA mismatch repair protein mutS gi|109701849|gb|ABG41769.1| DNA mismatch repair protein MutS [Pseudoalteromonas atlantica T6c] Length = 889 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 315/899 (35%), Positives = 487/899 (54%), Gaps = 51/899 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L+ TPMM+QY++IK+ +PD L+FYRMGDFYELFFDDA A+ L I+LT RGK G Sbjct: 17 SLQQHTPMMQQYLKIKAEHPDILLFYRMGDFYELFFDDAKKAAELLDISLTARGKSGGNA 76 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM GVP H +Y+ +L+K+G +AI EQ+ P +K V R V R+VTPGT++ Sbjct: 77 IPMAGVPYHAVENYLARLVKMGQSVAIVEQVGDPATSK-----GPVERKVQRIVTPGTVS 131 Query: 141 EDQLLSPTDSNYLMAV------ARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRID 193 ++ LL+ + L AV A + A +D+++G F + S + L +++ R + Sbjct: 132 DEALLNDKQDSILAAVFCPTQKANQELIFGYATLDVTSGRFTLCELSGEEALAAELQRTN 191 Query: 194 PREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SF 252 P E+++ + Y L + +P FD + +++ + + FG Sbjct: 192 PVELLYPDD----FAYSHLINQRKGLR-RRPQWEFDLQTATNQLTSQFGTNELSGFGVQN 246 Query: 253 SQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 QV AA + YIK TQ P I E T+ +D+A R NLE+ LSG E Sbjct: 247 HQVGICAAGCVMQYIKDTQRSALPHIDRIVLESHNDTVVMDAATRRNLELTFNLSGGIEN 306 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 +L +D + T G RL I PLTD T + R +I +++P +Q LK Sbjct: 307 TLASILDKTSTPMGSRLLQRWIHRPLTDVTVLKKRQRNIQGLMESPY--TQLQSALKKIG 364 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDL--------PEELRGAVEKL 424 D+ R L+RL + P+D A +R +I + +L++++ P +L EK+ Sbjct: 365 DMQRVLARLALRSARPRDFARLRQAFALLPDIQH-YLEHEISHTSESAQPSDLLHLAEKI 423 Query: 425 KKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAE 484 + P L + + P RDGG +++G + LD R L + + L+L+ E Sbjct: 424 SQYP-DFADLLERAVIEAPPVLIRDGGVIKEGYNEELDRLRELSKGATDYLEELELREKE 482 Query: 485 ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLE 544 T I +LK+ +N GYFIEV+ S + ++ + ++ RQT+ N R+ EL + E Sbjct: 483 RTGIASLKVGYNRVHGYFIEVSRSQSDLVPVE------YVRRQTLKNNERYIIPELKEHE 536 Query: 545 NRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP 604 + + ++ + +L +E ++ L + ++ Q L ++ +A +D+ LA A+ +Y RP Sbjct: 537 DNVLSSQSRSLALEKRLYDELFDLLLPQLTQLMQSADALAELDVLTNLAERAESLDYHRP 596 Query: 605 IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 + + GRHP+VE Q S PFIAN +++ P+ + + ++TGPNMGGKS Sbjct: 597 ELCPQSGIHFSQGRHPVVE----QVSDAPFIANPINVN-PDRR----MLVITGPNMGGKS 647 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 T++RQ ALIV+MA +GSY+PA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL Sbjct: 648 TYMRQTALIVLMAYIGSYIPAQDAQIGPIDRIFTRIGASDDLASGRSTFMVEMTETANIL 707 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR 784 N AT S V++DEIGRGT+T DGLS+AWA EYL + L ATH+ ELT L+ +L Sbjct: 708 NNATANSLVLMDEIGRGTSTYDGLSLAWACAEYLATKLQSFTLFATHYFELTGLADALPE 767 Query: 785 FHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE---- 840 N L + E I F+H V G A+ SYG+QV +LAG+P V+ A L E Sbjct: 768 LANVHLDAVEHGESIRFMHAVQDGAANKSYGLQVAQLAGVPKLVVQAAKRKLHELETGDI 827 Query: 841 -KLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 K + Y + + + LS+ + + + + D+++P AL LY +K Sbjct: 828 SKQGRQETSPVNTVYATEKVETQLDLLSQTSEA-EDLLHSIQPDDLTPKQALDYLYQLK 885 >gi|312111577|ref|YP_003989893.1| DNA mismatch repair protein MutS [Geobacillus sp. Y4.1MC1] gi|311216678|gb|ADP75282.1| DNA mismatch repair protein MutS [Geobacillus sp. Y4.1MC1] Length = 864 Score = 492 bits (1267), Expect = e-137, Method: Compositional matrix adjust. Identities = 305/897 (34%), Positives = 497/897 (55%), Gaps = 65/897 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY++IK+ PD+ +F+R+GDFYE+FFDDA+ A++ L ITLT R + +PMCG Sbjct: 5 TPMIQQYLDIKAQYPDAFLFFRLGDFYEMFFDDAIKAAQELEITLTSRDGGGDERVPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI++LI G+++AICEQ+E P AK +VRR VV+L+TPGT+ E + L Sbjct: 65 VPYHSAQGYIEQLISKGYKVAICEQVEDPKTAK-----GVVRREVVQLITPGTVMEGRGL 119 Query: 146 SPTDSNYLMAVARIR-TEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 ++NYL V + A+ D+STG +I+ ++ + +++++ I +EI+ + + Sbjct: 120 LEKENNYLATVTLFADGTYGFAYTDLSTGENRITILASFEDVMNELYAIGTKEIVLA-SD 178 Query: 204 LSHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 E + L E G P F +I+ D IT Sbjct: 179 FPSDEQQLLKERYGVTISYEDGTEMPEGF--ATIAGGLAQDKLQITF------------- 223 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKT 317 A + YI +TQ + + + + ID ++ NLE+ T+ S R+ SLL Sbjct: 224 --ARLLHYIIRTQKRRLDHMQPVQVYQVDHYMKIDLYSKRNLELTETIRSKGRKGSLLWL 281 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D ++T GGRL + + PL D +I RL + I + +++ L+ DV R Sbjct: 282 LDETVTAMGGRLLKQWLDRPLLDRGQIERRLHMVETLIHHYFERQELRERLREVYDVERL 341 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTL 435 R+ G +D+ ++ ++ + ++ L + ++L ++ +L LE+++ Sbjct: 342 AGRVAYGNVNARDLIQLKKSLQQIPALKDIVAKLADSQAQQLADKLDPCSELVDLLERSI 401 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 ++ P ++G ++DG + +LD R K IA L+ K E T IK+LKI + Sbjct: 402 Q----ENPPLSVKEGNIIKDGYNETLDRFRDASRNGKSWIAQLESKERELTGIKSLKIGY 457 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+IEVT + +L K R+ +QT++N RF T EL + E I A ++ Sbjct: 458 NRVFGYYIEVTKPNLHLL-----PKGRYERKQTLANAERFITQELKEKEALILEAEEKSI 512 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E E F + + + L + ++ I+ +D+ + A +++E++Y +P I++ Sbjct: 513 ELEYELFVDIRERVKQYIPRLQSLAKAISELDVLQSFATVSEERHYVKPQFSEHRELIIQ 572 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VEK L Q+ ++ NDC ++ + L L+TGPNM GKST++RQ AL I Sbjct: 573 AGRHPVVEKVLGTQT---YVPNDCYMNKERE-----LLLITGPNMSGKSTYMRQIALTAI 624 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+G +VPA A + I D++F+R+G+AD+L SG+STFMVEM+E + + AT S ++ Sbjct: 625 MAQIGCFVPADKAVLPIFDQVFTRIGAADDLVSGQSTFMVEMLEARNAIVHATQNSLILF 684 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DG+++A A IEY+H+ + L +TH+HELTDL +SL + N + + Sbjct: 685 DEIGRGTSTYDGMALAQAIIEYIHDHIGAKTLFSTHYHELTDLEQSLPKLKNVHVSAVEE 744 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ-------- 847 N ++FLHK+ G AD SYGI V +LAGLP+++I RA +IL E+ + Sbjct: 745 NGKVVFLHKIEEGPADQSYGIHVAELAGLPSSLIRRAEEILAELEQQEEQRKEEQEEPGG 804 Query: 848 ------KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + ++ E +KE + LSK +K +E +K +NL EM+PL AL LY ++ Sbjct: 805 KNEAVFEQLSMFAEEKPSKE-ETRLSKKEKKALETLKSVNLLEMTPLEALNKLYEIQ 860 >gi|283768677|ref|ZP_06341589.1| DNA mismatch repair protein MutS [Bulleidia extructa W1219] gi|283105069|gb|EFC06441.1| DNA mismatch repair protein MutS [Bulleidia extructa W1219] Length = 842 Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust. Identities = 301/878 (34%), Positives = 488/878 (55%), Gaps = 62/878 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY+ +K PD+L+FYR+GDFYE+FF+DA+ AS+ L + LT + + + IPMCG Sbjct: 6 TPMMEQYLNVKKNYPDTLLFYRVGDFYEMFFEDAVKASKELDLVLTGKAAGVEERIPMCG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H N YI +L+ G ++AICEQ+ P + ++ LV R+V+R++TPGT+ D++ Sbjct: 66 VPFHAVNAYIPRLVNKGFKVAICEQLTDP-----KLSQGLVERDVIRIITPGTMV-DEIQ 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD--RLISDIMRIDPREIIFSEKE 203 S YL A+ + +++A +++STG + +H LI +++ + RE + S Sbjct: 120 DDRQSVYLAAIEDMVYGYSLAIVEMSTGENYVEEIDHQSVHLIQSLLKANVRECVVS--- 176 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSIS-ESRIADYYNITTVDTFGSFSQVEKTAAAA 262 S E L N + + + SIS E++I Y+ +D ++K A Sbjct: 177 ------SSFSEKLKN-QIQEQGILI--SISDETKIDSIYDSLIID-------IQKEALLK 220 Query: 263 A----ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS-REQSLLKT 317 A ++Y++ TQ + P E + L++D + R NLE+++ L S R +L Sbjct: 221 AYGRMLNYLQNTQKQALTHLRQPSLEKEEEALYMDFSTRLNLELVQPLRQSARAVTLWSF 280 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D+ + G R + I PL KI RL+ +N+ ++N + + I+ L D+ R Sbjct: 281 LDHCASAMGSRELKKWIERPLIQKEKIEERLNKVNWMMENMMDRSFIRDHLSRIYDLERI 340 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 ++R IG D+ + + ++LN LPE + L LP EK + S Sbjct: 341 ITRCAIGSANAVDVQRLGKTLAEVPDVLN-----RLPESFFPEFQHLDVLPDLFEK-IDS 394 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 L ++ P +GG +DG A+LDE RS++ + I L+ K E T IK LKI +N Sbjct: 395 ALVENPPLLISNGGLFKDGYSAALDEVRSIQKNGQDFIMHLEAKERERTGIKTLKIAYNK 454 Query: 498 NLGYFIEVTSSSA-SVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+IE++ +A SVL + + +QT++N RF + EL E+RI +A+ A+ Sbjct: 455 VFGYYIEISKVAAQSVL-----PEWGYTRKQTLTNNERFISEELKAEEDRILHASQRAVE 509 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E + F+ L N+I +Q L ++ ++ +D+ LA ++++ Y RP+ D+ ++ Sbjct: 510 LEKKLFQELMNSIKDQLWPLQILARALSQVDVYANLAEMSQKHQYVRPVFDDVI-LDIQS 568 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 G+HPI+E +K ++AND L L L+TGPNMGGKST++RQ ALIV++ Sbjct: 569 GKHPILEAQMKHPR---YVANDIHLDAEK-----YLDLITGPNMGGKSTYMRQVALIVLL 620 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+G YVPA + I DK+F+R+G++D++ SG STFMVEM E L +ATN+S ++ D Sbjct: 621 AQIGCYVPAKQCVMPIFDKIFTRIGASDDILSGHSTFMVEMKEANQALQEATNRSLILFD 680 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DG+++A A +EY+ + + + +TH+HELT++ L N + V + Sbjct: 681 EIGRGTSTYDGMALAQAMMEYIAHVVKAKTMFSTHYHELTEMENYLDCVINEHVSVKQKD 740 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 + + FL+KV G A HSYGI V +LAGLP +V+ RA DI + E H Q + Sbjct: 741 QDVTFLYKVEKGAAGHSYGINVARLAGLPESVLERAKDIQRDLENADHLQQAGFQF---- 796 Query: 857 IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 ++ K +S+ +++ L++DE+SP A + L Sbjct: 797 VEMKREDPMVSR----LKDRLTGLDMDELSPKQAWQFL 830 >gi|218283241|ref|ZP_03489302.1| hypothetical protein EUBIFOR_01890 [Eubacterium biforme DSM 3989] gi|218215996|gb|EEC89534.1| hypothetical protein EUBIFOR_01890 [Eubacterium biforme DSM 3989] Length = 846 Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust. Identities = 303/888 (34%), Positives = 484/888 (54%), Gaps = 65/888 (7%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TPMM+ Y+++K NPD+++FYR+GDFYE+FFDDA L S+ L + LT R + + +P Sbjct: 4 KKYTPMMQHYLKMKEENPDAILFYRLGDFYEMFFDDAKLVSQELDLVLTGRSAGVEEKVP 63 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP H AN YI +L+K G+++AICEQ+E P A K LV R +V++VTPGT D Sbjct: 64 MCGVPFHAANSYISRLVKKGYKVAICEQLEDPSNA-----KGLVDRGIVKIVTPGTYM-D 117 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD--RLISDIMRIDPREIIFS 200 + +NY+ + E + + ++STG K T L ++ + E++ Sbjct: 118 STMDAKTTNYMASCDISSFEITVVYCELSTGELKYQTLQRSLVALQKALLEQNVSELVCP 177 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 ++ S E + + +++ H S D + ++ S+ K A Sbjct: 178 MA--MDKKWMSALEEMETILISK------HKKSSVDSQDLPLLNGIE-----SESLKEAF 224 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQSLLKTID 319 A ++Y+K TQ + E D L +D +++LE++ + S ++ +SL +D Sbjct: 225 ALLMAYLKDTQKQHIDHFLPIESMDKDKVLVMDYETKNHLELVSSQSTNAKAESLWSFMD 284 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + G RL I PL D+ KI R +I +N +L +++ L D+ R S Sbjct: 285 KCQSAMGSRLLKRWIEYPLIDANKIAKRQAAIKDLKENFMLRENLKEHLVYVYDMERLAS 344 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKND-LPEELRGAVEKLKKLP--QSLEKTLS 436 R+ G P+D+ + + IL+L + D PE ++P Q L + Sbjct: 345 RMAYGSASPRDVLQLVATLEHAKPILDLAISLDSYPE--------FSQVPDCQGLYNEIK 396 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + + ++ P ++GG DG + LDE R + + K I L+ K E T +K+LK+ +N Sbjct: 397 NAIIENPPLTLKEGGVFNDGYNQELDEVRRIAKKGKDFILELEAKERERTGVKSLKVGYN 456 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GYFIEV + + S +K + + +QT++N TRF T EL + E +I +A + + Sbjct: 457 RIFGYFIEVRNGNLSNIKDEF----GYHAKQTLANATRFVTQELKEKEEQILHAQETKVK 512 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E F L I + L +Q ++ ID+ ++LAILA E+ Y P+ N V + Sbjct: 513 LEQSLFNDLLLRIKKDLFDLHACAQALSTIDVLVSLAILASEKGYVCPVFHPGYNVNVVE 572 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 G+HPI++ +K+ K +++ND +S + L+TGPNMGGKST++RQNAL+V+M Sbjct: 573 GKHPILDDRMKK---KRYVSNDWKMS-----EDEHVQLITGPNMGGKSTYMRQNALLVVM 624 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQMGS++PA A + I D++F+R+G++D++ +G+STFMVEMIE + L AT S ++ D Sbjct: 625 AQMGSFIPAKTAELPIFDRIFTRIGASDDILTGKSTFMVEMIEANAALCYATKHSLILFD 684 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGTAT DG+++A A +EY+ E + L +TH+HELTDL K HN + V + Sbjct: 685 EIGRGTATYDGMALAQAMLEYIDEAIGAKTLFSTHYHELTDLEKEHPSMHNVHVDVREEK 744 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP- 855 I F +++I G AD SYGI V +LA LP V+ RA +L FE NQ + + Y P Sbjct: 745 NEIEFRYRIIDGKADKSYGINVARLAHLPKVVLDRAAQLLTNFE-----NQDNNQNYQPS 799 Query: 856 -----EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++Q ++SK +++++ L++D M+P AL LY +K Sbjct: 800 LFVMEQVQPEKSK---------LLQQLQELDIDSMTPRDALDCLYELK 838 >gi|27467892|ref|NP_764529.1| DNA mismatch repair protein [Staphylococcus epidermidis ATCC 12228] gi|57866808|ref|YP_188445.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis RP62A] gi|282876272|ref|ZP_06285139.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis SK135] gi|38258089|sp|Q8CPF0|MUTS_STAES RecName: Full=DNA mismatch repair protein mutS gi|71151981|sp|Q5HPP5|MUTS_STAEQ RecName: Full=DNA mismatch repair protein mutS gi|27315437|gb|AAO04571.1|AE016747_68 DNA mismatch repair protein [Staphylococcus epidermidis ATCC 12228] gi|57637466|gb|AAW54254.1| DNA mismatch repair protein HexA [Staphylococcus epidermidis RP62A] gi|281295297|gb|EFA87824.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis SK135] Length = 873 Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust. Identities = 318/906 (35%), Positives = 487/906 (53%), Gaps = 88/906 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY++IKS D L+F+R+GDFYE+FFDDA ASR L ITLTKR IPMCG Sbjct: 5 TPMMQQYLKIKSEYDDCLLFFRLGDFYEMFFDDAKEASRVLEITLTKRDAKKENPIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A++YI+ LI G+++AICEQ+E P + K +VRR VVR++TPGT+ + + Sbjct: 65 VPYHSADNYIETLINKGYKVAICEQMEDP-----KQTKGMVRREVVRIITPGTVMDQNGM 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204 +NY+++ E+ + + D+STG K++ + L+++I I+P EI+ + L Sbjct: 120 DEKKNNYILSFIE-NEEFGLCYCDVSTGELKVTHFKDTATLLNEITTINPNEIVIKQA-L 177 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISE----------SRIADYYNITTVDTFGSFSQ 254 S + + + V + D+ +++ + DY + T S Sbjct: 178 SEELKRQINMITETITVREDISDEDYDMNQLTHQLMHDTTQLLLDYIHHTQK---RDLSH 234 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQS 313 +E+ AA+ Y+K +D A+ NLE+ ++ S++ + Sbjct: 235 IEEVIEYAAVDYMK-----------------------MDYYAKRNLELTESIRLKSKKGT 271 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T G R + I PL + +IN RL+ + F+ I + ++ L D Sbjct: 272 LLWLMDETKTPMGARRLKQWIDRPLINKQQINDRLNIVEEFMDRFIERDTLRNHLNQVYD 331 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R + R+ G +D+ ++ I +I L N+L + ++L+ L L+ Sbjct: 332 IERLVGRVSYGNVNARDLIQLKHSISEIPHIKALL--NELGAQTTTQFKELEPLDDLLQ- 388 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L L ++ P +DGG ++G +A LDE K +A LQ K E T IK+LKI Sbjct: 389 ILEESLVEEPPISIKDGGLFKNGFNAQLDEYLEASKNGKTWLAELQAKERERTGIKSLKI 448 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GYFIE+T ++ + + + +R +QT+SN RF T EL + E+ I A + Sbjct: 449 SFNKVFGYFIEITRANLNNFQPEAFGYNR---KQTLSNAERFITDELKEKEDIILGAEDK 505 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 A+ +E E F L I +E L +++I+ +D + A +A++ NY +P + Sbjct: 506 AVELEYELFVKLREHIKTYTERLQKQAKIISELDCLQSFAEIAQKYNYVKPTFSDDKVLH 565 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +++ RHP+VE+ + ++ NDC L + ++L+TGPNM GKST++RQ A+I Sbjct: 566 LENSRHPVVERVM---DYNDYVPNDCHLD-----DETFIYLITGPNMSGKSTYMRQVAII 617 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 IMAQMG+YVP A + I D++F+R+G+AD+L SG+STFMVEM+E L AT S + Sbjct: 618 SIMAQMGAYVPCDSATLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTYATENSLI 677 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 I DEIGRGT+T DGL++A A IEY+ +T+ + L +TH+HELT L + LK N + + Sbjct: 678 IFDEIGRGTSTYDGLALAQAMIEYVAQTSHAKTLFSTHYHELTSLDQMLKCLKNVHVAAN 737 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE-----KLYHHNQK 848 + +IFLHKV G D SYGIQV KLA LPN VI RA IL FE +L H N Sbjct: 738 EYQGELIFLHKVKDGAVDDSYGIQVAKLADLPNEVIDRAQVILNAFEQKPSYQLSHEN-T 796 Query: 849 DMRLYYPE-------------IQTKESKNNLSK---------NDKLFVE-KIKCLNLDEM 885 D + P I+T S +N + N + VE +I+ LNL M Sbjct: 797 DNQQTVPSYNDFGRTEEEQSVIETHTSNHNYEQATFDLFDGYNQQSEVECQIRELNLSNM 856 Query: 886 SPLTAL 891 +PL AL Sbjct: 857 TPLEAL 862 >gi|282895570|ref|ZP_06303704.1| MutS 1 protein [Raphidiopsis brookii D9] gi|281199410|gb|EFA74274.1| MutS 1 protein [Raphidiopsis brookii D9] Length = 858 Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust. Identities = 297/836 (35%), Positives = 449/836 (53%), Gaps = 39/836 (4%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLT-KRGKHLGKDIPMCGV 86 M + Y+E+K P +L+ YR+GDF+E FF DA++ SR L + LT K G +G+ I M GV Sbjct: 28 MYQHYVEMKDKYPHALLMYRVGDFFETFFQDAIIVSRELELVLTSKHGGDVGR-IAMTGV 86 Query: 87 PVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLS 146 P H Y +L++ G+ + IC+Q+E +A LV+R V R++TPGT+ E+ +L Sbjct: 87 PHHAWERYATQLVEKGYAVVICDQVEDASQAV-----GLVKREVTRILTPGTVLEEGMLK 141 Query: 147 PTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEKELS 205 + +NYL AV W +A+ DISTG F + S+ + L ++MR+ P E++F Sbjct: 142 ASRNNYLAAVVIAANHWGLAYADISTGEFLTTQSSELENLTQELMRLQPAEVLFPTNAPD 201 Query: 206 HAEYKSLFETLGNVAVAQPNVF---------FDHSISESRIADYYNITTVDTFGS-FSQV 255 ET ++ P F F + S++ + + +++ G + Sbjct: 202 LGTLLRPGETSPSLPQCLPPTFCYSLRSQLPFSQGEARSKLLQKFKLRSLEGIGCEHLPL 261 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSL 314 AA + YI+ TQ N + + L +D R NLEI +T+ G+ SL Sbjct: 262 AVRAAGGLLEYIEDTQKQNSVPLQLLRSYILNDYLILDHQTRRNLEISQTVRDGTFHGSL 321 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L ++++ T GGR + PL D I +R D+I ++N L ++K+L+ D+ Sbjct: 322 LWALNHTTTPMGGRALRRWLLQPLIDIKGIRSRQDTIEELVENTPLRQDLRKLLRQIYDL 381 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R R G +D+ + D + L + P ++K+ + + L K Sbjct: 382 ERLTGRAGSGTANARDLLALADSFSRLPELSQLVAQARSP--FLKVLQKVPPIVEELGKK 439 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L + L + PT ++GG +R G D LDE ++ + + IA+L++ T I LK+ Sbjct: 440 LHAYLVEAPPTQLKEGGLIRSGVDRILDERKATVEADQHWIATLEVDERARTGIPTLKVG 499 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N GY+I ++ S K + + +I +QT++N R+ T EL + E RI A + Sbjct: 500 FNKTFGYYISISRS------KSDQVPENYIRKQTLTNEERYITPELKEREARILTARDDL 553 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 +E E F L + + +E++ + S+ +A D+ LA LA Q YCRP + + Sbjct: 554 NQLEYEVFANLRDEVGSHAETIRDISRAVAAADVLCGLAELAVHQGYCRPQMLQGRELEI 613 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDL----SCPNDKNSGK-----LWLLTGPNMGGKST 665 DGRHP+VEK+L + F+ N L + P D L +LTGPN GKS Sbjct: 614 IDGRHPVVEKSL---PAGFFVPNSTRLGSGTTLPQDPQEQTVSYPDLVILTGPNASGKSC 670 Query: 666 FLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILN 725 +LRQ LI +MAQ+GS+VPA A +GI D++F+RVG+ D+L++G+STFMVEM ETA+ILN Sbjct: 671 YLRQLGLIQLMAQIGSFVPAKSARLGICDRIFTRVGAVDDLSTGQSTFMVEMNETANILN 730 Query: 726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRF 785 AT S V+LDEIGRGTAT DGLSIAWA EYL + R + ATH+HEL +L+ L Sbjct: 731 HATANSLVLLDEIGRGTATFDGLSIAWAVAEYLAAEIKARTVFATHYHELNELASILSNV 790 Query: 786 HNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 N + V + + IIFLH+V PG AD SYGI+ G+LAGLP VI RA ++ EK Sbjct: 791 ANYQVTVKELPDQIIFLHQVQPGGADKSYGIEAGRLAGLPPVVIERAKQVMGQIEK 846 >gi|119487780|ref|ZP_01621289.1| DNA mismatch repair protein [Lyngbya sp. PCC 8106] gi|119455613|gb|EAW36750.1| DNA mismatch repair protein [Lyngbya sp. PCC 8106] Length = 886 Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust. Identities = 300/840 (35%), Positives = 456/840 (54%), Gaps = 43/840 (5%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPMCG 85 MM++YIE+K P +L+F+R+GDF+E FF DA+ +R L + T + GK +G+ +PM G Sbjct: 30 MMQRYIEVKGQYPHALLFFRVGDFFECFFQDAVTIARELELIQTTKAAGKEIGR-VPMTG 88 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP Y L++ G+ + IC+Q+E A K K VRR V R++TPGTLT+D +L Sbjct: 89 VPHEHVYRYSSTLLEKGYAVVICDQVEDAAIAAK--EKRQVRREVTRVLTPGTLTDDNML 146 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTS-NHDRLISDIMRIDPREIIFSEKEL 204 +NYL A+ W +A+ DISTG F + S N + L ++MR+ P EI+F Sbjct: 147 KGRQNNYLAAIVIAGQHWGLAYADISTGEFLTTQSENLEHLTQELMRLQPSEILFPVNVP 206 Query: 205 SHAEYKSLFETLGNVAVAQPNVF---------FDHSISESRIADYYNITTVDTFGS-FSQ 254 ++ E + P F F ++ RI + +T+++ G Sbjct: 207 DISKMLKPGENDQELPDCLPRCFCYSLRSQKPFSLGEAKPRILQQFQLTSLEGIGCEHLP 266 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQS 313 + + Y++ TQ + + P + L +D +R NLEI T+ + S Sbjct: 267 LSVRTVGGLLEYLEDTQKDHITPLQRPRTYTLSDYLVLDHQSRRNLEITTTVRDNTLYGS 326 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T G R + PL D I R D+I F+ N L IQ+IL+ D Sbjct: 327 LLWALDKTSTPMGSRALRRWLLQPLLDLKGIRARHDTIQEFVNNHELRQDIQQILRQIYD 386 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R R+ KD+ + D + + + + P ++ L+ LPQSLEK Sbjct: 387 LERLTGRVGNSTANAKDLVSLADSLAKLPQLATVAEQGKSP-----YLKALQNLPQSLEK 441 Query: 434 T---LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 ++ L + P ++G +R DA+LDE RSL + ++ IA+L+++ E T I Sbjct: 442 VAEKITHSLVESPPISVKEGELIRPEVDANLDEMRSLAVEDQQWIANLEVQERERTGIPT 501 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ N GY+I ++ A + + D +I +QT++N R+ T EL + E RI A Sbjct: 502 LKVGFNKTFGYYISISRGKAEL------APDDYIRKQTLTNEERYITPELKEREVRILTA 555 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 E + F L + + E ++++ N S+ +A ID+ LA +A Q+YC P + Sbjct: 556 KEDLNQTEYDIFVRLRSEVAEYTDTIRNVSKAVAAIDVLCGLADVAIRQSYCCPEMIEGR 615 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSC--PNDKNS-------GKLWLLTGPNMG 661 + DGRHP+VEK L F+ N L P+ ++ L +LTGPN Sbjct: 616 ELKIIDGRHPVVEKLL---PPGFFVPNTAQLGSRIPDKEDEELTPYSYPDLIILTGPNAS 672 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKS +LRQ LI +MAQMGS++PAS A + + D++F+RVG+ D+LA+G+STFMVEM ETA Sbjct: 673 GKSCYLRQIGLIQLMAQMGSFIPASSAQLSLCDRIFTRVGAVDDLATGQSTFMVEMNETA 732 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS 781 +ILN AT +S V+LDEIGRGTAT DGLSIAW+ EYL + + + ATH+HEL +L+ Sbjct: 733 NILNHATEKSLVLLDEIGRGTATFDGLSIAWSVAEYLAAEIQAKTIFATHYHELNELASI 792 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 L+ N + V + + I+FLH+V PG AD SYGI+ G+LAGLP+ VI RA +++ E+ Sbjct: 793 LENVANYQVTVKELPDKIVFLHQVQPGGADKSYGIEAGRLAGLPDVVIQRARQVMRQIEQ 852 >gi|198274149|ref|ZP_03206681.1| hypothetical protein BACPLE_00287 [Bacteroides plebeius DSM 17135] gi|198273227|gb|EDY97496.1| hypothetical protein BACPLE_00287 [Bacteroides plebeius DSM 17135] Length = 873 Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust. Identities = 307/886 (34%), Positives = 487/886 (54%), Gaps = 41/886 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY ++K+ +PD+++ +R GDFYE + +DA+ A+ LGITLTKR K + M G Sbjct: 10 TPMMKQYFDLKAKHPDAIMLFRCGDFYETYSEDAVAAAEILGITLTKRANGQSKTVEMAG 69 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KLI+ G R+AIC+Q+E P KK LV+R + LVTPG D +L Sbjct: 70 FPHHALDTYLPKLIRAGRRVAICDQLEDPKTTKK-----LVKRGITELVTPGVAINDNVL 124 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF--SEKE 203 S ++N+L AV +T I+++DISTG F + D + + P+E++F +K Sbjct: 125 SYKENNFLAAVYFGKTACGISFLDISTGEFLTAEGPTDYIDKLLNNFAPKEVLFERGKKP 184 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + + S F T + F+ + ++ ++ ++ + FG + A+ A Sbjct: 185 MFEGNFGSKFFTF-----ELEDWVFNETSAKEKLLKHFETKNLKGFGVENLHNGIIASGA 239 Query: 264 I-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 I Y+ TQ I R + + +D +LE++ +++ LL ID++I Sbjct: 240 ILQYLDMTQHYQIGHITSLSRIEEDRFVRLDKFTVRSLELVGSMNEGG-TCLLDIIDHTI 298 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 + G R+ I PL + IN RLD + FF + P +++ L D+ R S+ Sbjct: 299 SPMGARMLKRWIVFPLKEIKPINERLDVVEFFFREPEFKEFVEEKLHLIGDLERICSKAA 358 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 +GR P+++ ++ +++ I N L D E LR E+L L S+ ++ + +D Sbjct: 359 VGRISPREVVQLKTALQAIEPIKNACLNAD-NESLRRIGEQLN-LCASIRDKIAKEIQND 416 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P GG + DG +A LDE R + K + +Q + +E T I +LKI +NN GY+ Sbjct: 417 PPLLVNKGGVIADGVNAELDELRKIAYSGKDYLLQIQQRESELTGIPSLKIAYNNVFGYY 476 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IEV ++ + + +I +QT+ N R+ T EL + E +I A + L++E + + Sbjct: 477 IEVRNTHKDKVPAE------WIRKQTLVNAERYITQELKEYEEKILGAEDKILILETKLY 530 Query: 563 EILSNAIIEQSESLD-NASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 L + E ++ NA+Q IA +D ++ A +A+ Y RP + + ++ GRHP+ Sbjct: 531 NELVCELAEFIPAIQINATQ-IARLDCLLSFANVARANKYIRPNVVDDDVLDIRQGRHPV 589 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 +EK L + +IAND L D ++ ++TGPNM GKS LRQ ALI +MAQ+G Sbjct: 590 IEKQLP--PGEKYIANDVYL----DTEEQQIIIITGPNMAGKSALLRQTALITLMAQIGC 643 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA AHIG+VDK+F+RVG++DN++ G STFMVEM E A+ILN + +S V+ DE+GRG Sbjct: 644 FVPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAANILNNISPRSLVLFDELGRG 703 Query: 742 TATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 T+T DG+SIAWA +E++HE R R L ATH+HEL D+ KR N + V + + + Sbjct: 704 TSTYDGISIAWAIVEHIHEHKKARARTLFATHYHELNDMEAQFKRIKNYNVSVKEVDNKV 763 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY-YPEIQ 858 IFL K+ G + HS+GI V K+AG+P +++ RA +IL E + Q+ + P Q Sbjct: 764 IFLRKLERGGSAHSFGIHVAKMAGMPKSIVKRADEILHQLEA--ENRQEGISAKGQPSKQ 821 Query: 859 TKESKNNLS---KNDKLFVE-KIKCLNLD--EMSPLTALKTLYAVK 898 T LS +D + + + + LNLD ++PL AL L +K Sbjct: 822 TASDGIQLSFFQLDDPVLCQIRDEILNLDVNNLTPLEALNKLNDIK 867 >gi|238855606|ref|ZP_04645907.1| DNA mismatch repair protein MutS [Lactobacillus jensenii 269-3] gi|282933020|ref|ZP_06338414.1| DNA mismatch repair protein MutS [Lactobacillus jensenii 208-1] gi|313473091|ref|ZP_07813575.1| DNA mismatch repair protein MutS [Lactobacillus jensenii 1153] gi|238831750|gb|EEQ24086.1| DNA mismatch repair protein MutS [Lactobacillus jensenii 269-3] gi|281302874|gb|EFA95082.1| DNA mismatch repair protein MutS [Lactobacillus jensenii 208-1] gi|313448795|gb|EEQ67673.2| DNA mismatch repair protein MutS [Lactobacillus jensenii 1153] Length = 860 Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust. Identities = 302/889 (33%), Positives = 483/889 (54%), Gaps = 47/889 (5%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + +TPMM+QY +IKS PD+ +FYR+GDFYELF DDA+ ++ L +TLT R I Sbjct: 1 MAETTPMMKQYYDIKSQYPDAFLFYRVGDFYELFEDDAVKGAQILELTLTHRSNKTENPI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PM GVP + Y+ L++ G+++A+CEQ+E P +AK +V+R +++LVTPGT+ Sbjct: 61 PMAGVPHQAVDSYVNTLVEKGYKVALCEQLEDPKQAK-----GMVKRGIIQLVTPGTMMN 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFS 200 + +SNYL +V ++ + +A+ D+STG IF + ++++++ + +E++F Sbjct: 116 EGPNGAKESNYLTSVFSTKSGFGLAYSDLSTGEIFTTHLKSFADVLNELLSLRTKEVVF- 174 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 E LS ++ L ++ N+ V+ P E Y I + +Q EK A Sbjct: 175 EGSLSDSQKDVLKKS--NITVSTP-----IQDQEKHAEVSYAIQKLS-----NQAEKDAT 222 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 ++Y+ TQ + + + ++ L + ++NLE++ + +G + SL +D Sbjct: 223 KQLVTYLLVTQKRSLAHLQIAKSYEVSQYLQMSHVVQNNLELVASAKTGKKMGSLFWLLD 282 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T GGRL + +A PL ++I R + + N + ++ LK D+ R Sbjct: 283 KTNTAMGGRLLKQWLARPLLSISEIEKRQKIVQAMLDNYFIREAVKDALKGVYDLERLTG 342 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILN-LFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 R+ G +++ + + + I + LF D E+L +++ L + L K + Sbjct: 343 RIAFGSANARELLQLSRSLDAIPQIQSALFESGD--EDLANFADQIIDLSE-LAKKIKDT 399 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + ++ P DGG +R+G + LD R + K +A LQ + T I+NLKI +N Sbjct: 400 IVENPPILTTDGGLIREGINEQLDRYRDAMNNGKTWLAQLQAQERTATGIENLKIGYNKV 459 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GYFI+V+ + + + + R+I +QT++ R+ T EL + EN I A N + +E Sbjct: 460 FGYFIQVSKGNIAKV-----PEGRYIRKQTLTGSERYITPELKEHENLILEAENKSTDLE 514 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI-VKDG 617 + F L I L IA +D + A +A+E NYCRP + I V G Sbjct: 515 YQIFSDLREYIKTFIPKLQELGNTIASLDALTSFATVAEENNYCRPSFHQDSQEIKVIAG 574 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VEK L S +I ND ++ + ++L+TGPNM GKST++RQ ALI +MA Sbjct: 575 RHPVVEKVLADGS---YIPNDIQMA-----DDTSVFLITGPNMSGKSTYMRQMALIAVMA 626 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+GS+VPA+ A + I D++F+R+G+AD+L SG+STFMVEM E L AT +S V+ DE Sbjct: 627 QVGSFVPATEASLPIFDQIFTRIGAADDLISGQSTFMVEMSEANEALQNATKRSLVLFDE 686 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGTAT DG+++A A ++YLH+ + L ATH+HELTD+ K+L N + + N Sbjct: 687 IGRGTATYDGMALAGAIVKYLHDKVGAKTLFATHYHELTDMEKTLDHLKNIHVGATQENG 746 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN------QKDMR 851 +IFLHK++PG AD SYGI V +LAGLPN V+ A +LK E + Q D+ Sbjct: 747 KLIFLHKILPGPADQSYGIHVAQLAGLPNKVLREASKMLKRLEAQGANGLEPASLQLDLF 806 Query: 852 LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAW 900 E + S +S +K +E I L L + +PL ++ V +W Sbjct: 807 SDSSETEETTSDEAISDTEKQVIEDINNLYLADKTPLEVMQL---VASW 852 >gi|189499799|ref|YP_001959269.1| DNA mismatch repair protein MutS [Chlorobium phaeobacteroides BS1] gi|238692280|sp|B3EP11|MUTS_CHLPB RecName: Full=DNA mismatch repair protein mutS gi|189495240|gb|ACE03788.1| DNA mismatch repair protein MutS [Chlorobium phaeobacteroides BS1] Length = 878 Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust. Identities = 298/892 (33%), Positives = 483/892 (54%), Gaps = 46/892 (5%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 E+ S TPMMRQY+E+K P+ L+ +R+GDFYE F++DA S L I LT+R Sbjct: 6 EKKKGSDTPMMRQYLEVKERYPEYLLLFRVGDFYESFYEDARKVSEALNIVLTRRSNGAS 65 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 DIPM G P H YI +L+K G ++ +C+Q+E P +AK LVRR + +VTPG Sbjct: 66 ADIPMAGFPHHACEGYIARLVKKGFKVTVCDQVEDPSQAK-----GLVRREITDIVTPGV 120 Query: 139 LTEDQLLSPTDSNYLMAVARIRT----EWAIAWIDISTGIFKISTSNHDRLISDIMRIDP 194 D++L +NYL A+ ++ +A+ID++T F+I+ +++ + I P Sbjct: 121 TYSDEILDDKHNNYLCALCFMKKGRERRAGVAFIDVTTAEFRIADLQPEQVKDMLQSIQP 180 Query: 195 REIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 EI+ S ++ S+++ S V + F + I ++ ++ FG S Sbjct: 181 SEILLSSRDKSYSDTVSRILPQEVVVTILDDWMFSEESASQVIERHFKTHSLKGFGIDSA 240 Query: 255 -VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQ 312 + AA + Y+ T+ I D + + +D + NLEI+ ++ GS Sbjct: 241 FAARVAAGVVLHYLADTRQNRLQYITRIALVDARDHMTLDLQTKRNLEIISSMQDGSTSG 300 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 SLL+ ID + G RL + PL I RLD++ I+ + + + L Sbjct: 301 SLLQVIDKTCNPMGARLLRRWLLRPLKRIDAIQARLDAVEVLIEEGAVRKALAEGLGGIH 360 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE 432 D+ R+LSR+ R P+++ + ++ + + LK+ + L+ V L L + + Sbjct: 361 DLERALSRIATFRSMPREVRSLGSSLQK-LPAIQALLKDSGSDRLKKLVSGLDLLDE-IT 418 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 + S + + RDGG++R G +A LD RS+ +K + +Q +T I LK Sbjct: 419 SIIESAIDPEAGAKLRDGGYIRSGYNAELDLLRSVSSNAKSGLMEIQQAERRKTAISTLK 478 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 I++N GY+IEV+ +++ + D + +QT+ N R+T EL + E +I NA Sbjct: 479 IQYNRVFGYYIEVSKANSDKVP------DYYEKKQTLVNAERYTIAELKEYEVKILNADE 532 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 + ++E E F L I S+ + ++++A +D + A ++ Y +P + N Sbjct: 533 KSQMLEQELFRDLCVRITACSKEIQQNAEIVAELDCLHSYACCSEAYGYVKPEVKEHGNL 592 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 +K+GRHP++E+ L +P++ NDC DK ++ ++TGPNM GKS++LRQN L Sbjct: 593 SIKNGRHPVLERIL--HVDEPYVPNDCFF----DKKQ-RMLMVTGPNMAGKSSYLRQNGL 645 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 IV++AQ+G +VPA A IG+VD++F+RVG++DNL SG STF+VEM E A+ILN AT +S Sbjct: 646 IVLLAQVGCFVPADAAEIGLVDRIFTRVGASDNLTSGESTFLVEMNEAANILNNATGKSL 705 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 ++LDEIGRGT+T DG+SIAWA EY+ R L ATH+HEL +L + N V Sbjct: 706 ILLDEIGRGTSTYDGMSIAWAMSEYIQSVVGARTLFATHYHELAELEERFDSISNYNATV 765 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 ++ + ++FL K++ G +D+SYGI+V ++AG+P+ VI RA +IL EK +D+ + Sbjct: 766 VETADKVVFLRKIVRGASDNSYGIEVARMAGMPSEVIQRAKEILSGMEK------RDIMI 819 Query: 853 YYPEIQTKESKNNL---SKNDKLFVEK-------IKCLNLDEMSPLTALKTL 894 + KE + S+ LF E+ I+ LN++ M+PL AL L Sbjct: 820 SF----GKECAGTIEPQSRQIYLFEEEERKLKNAIEALNINTMTPLDALLEL 867 >gi|284009106|emb|CBA76100.1| DNA mismatch repair protein [Arsenophonus nasoniae] Length = 853 Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust. Identities = 310/887 (34%), Positives = 482/887 (54%), Gaps = 50/887 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +N S TPMM+QY+ +K+ + D L+FYRMGDFYELFFDDA A++ L I+LTKRG+ G+ Sbjct: 5 QNFASHTPMMQQYLRLKAQHADILLFYRMGDFYELFFDDAKKAAQLLDISLTKRGQSAGQ 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H Y+ KL+++G +AICEQ+ P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGVPHHAVESYLAKLVQLGESVAICEQVGDPATSK-----GPVERKVVRIVTPGTV 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLIS-DIMRIDPREII 198 T++ LL N L A+ + + A +DI++G F IS IS ++ R P E++ Sbjct: 120 TDEALLQERQDNLLAAIWQEDHRYGYATLDITSGRFIISEMADITTISAELQRTRPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + E ++ A LFE + +P F+ ++ ++ + + FG VEK Sbjct: 180 YPENFVNVA----LFENNKGLR-RRPLWEFELDTAKQQLNLQFGTQDLMGFG----VEKA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y+K TQ P I E + T+ +D+A R NLE+ + LSG E + Sbjct: 231 TLALRAAGCLLQYVKDTQRTALPHIRSITMEQQKETIILDAATRRNLELTQNLSGGSENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 + +D +T G R+ + +PL + + R +I + P L+ D Sbjct: 291 VAAILDQCVTPMGSRMLKRWLHTPLRNLDSLLNRQQAIAGLQAYHFELQPF---LRQIGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSL 431 + R L+RL + P+D+ +R + +I + K + P + L+ V SL Sbjct: 348 LERILARLALRSARPRDLVRMRHAFQQFADIHAILDKIESPYVKNLQSRVSTFT----SL 403 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + L + D P RDGG + G + LDE R+L + + L+L+ E+ I +L Sbjct: 404 QTLLEEAIVDTPPVLVRDGGVIATGYHSELDEWRALAAGANDYLEKLELREKEKLGIDSL 463 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 K+ N GY+++V+ + + ++ RQT+ N R+ EL + E+++ + Sbjct: 464 KVGFNAVHGYYLQVSRGQSHRVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSK 517 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + AL IE + +E L + ++ +L +++ +A +D+ LA A+ +Y PI++ Sbjct: 518 SKALAIEKKLYEELFDLLLPHLSALQTSAEALAELDVLNNLAERAETLDYRCPILNERPG 577 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 + GRHP+VE+ L S+PFI+N DLS +L ++TGPNMGGKST++RQ A Sbjct: 578 IEIVAGRHPVVEQVL----SEPFISNPLDLSPQR-----RLLIITGPNMGGKSTYMRQAA 628 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LI ++A +GS+VPA A IG +D++F+RVG++D+LA+GRSTFMVEMIETA+IL+ AT QS Sbjct: 629 LITLLAYIGSFVPAEKAIIGPIDRIFTRVGASDDLAAGRSTFMVEMIETANILHNATEQS 688 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT+L++ + N L Sbjct: 689 LVLMDEIGRGTSTYDGLSLAWACAENLVSQIKAMTLFATHYFELTNLAEKQEGAVNIHLD 748 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR 851 + ++ I F+H V G A SYG+ V LAG+P VI RA L E L Sbjct: 749 AIEHDDTIAFMHNVQEGAASKSYGLAVASLAGVPAKVIQRAKQKLIELEMLSTLPANK-- 806 Query: 852 LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 I + + K ++ ++ LN D ++P AL+ +Y +K Sbjct: 807 ----SIDNSQRAKVVEKTIPPAIKTLEELNPDALTPRQALELIYRLK 849 >gi|187250631|ref|YP_001875113.1| DNA mismatch repair protein MutS [Elusimicrobium minutum Pei191] gi|226723061|sp|B2KB17|MUTS_ELUMP RecName: Full=DNA mismatch repair protein mutS gi|186970791|gb|ACC97776.1| DNA mismatch repair protein MutS [Elusimicrobium minutum Pei191] Length = 851 Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust. Identities = 321/896 (35%), Positives = 483/896 (53%), Gaps = 74/896 (8%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TP+MRQY +IKS N D +VF+R+GDFYE+F DA ASR LGI LT+RG +P Sbjct: 5 KQLTPLMRQYNDIKSKNTDLIVFFRLGDFYEMFDSDAREASRILGIALTQRG-----GVP 59 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP H A +YI K+IK G ++ ICEQ+ G L R +VR++TPGT+ ED Sbjct: 60 MCGVPYHAAANYISKIIKEGRKVGICEQV-----GTGEGKSKLFERKIVRVITPGTVIED 114 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD----RLISDIMRIDPREII 198 +L SNYL+ V + W A ID+STG F ++ D L + ++P EI+ Sbjct: 115 NMLQSNVSNYLVCVFTDKKGWGAAAIDVSTGEFWVTEQADDISLNGLSCMLAALNPAEIL 174 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + L KS G+VA V + S S+I + +V + + T Sbjct: 175 LDKITLDRV--KSSMMIPGSVATTI--VPREES---SQIPSNWPSQSV---WAGKKTALT 224 Query: 259 AAAAAISYIKKTQMVNKPTIG---YPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 A AI YI VN+P P ++I L +D A LE++ + +G+R+ SL Sbjct: 225 CALTAIKYIN----VNEPGFKDLLIPFYKEISDYLALDENAVRTLELV-SQNGARKGSLW 279 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D+++T GGR I +PL + I R + ++ F NP+ ++ IL D+ Sbjct: 280 HLLDFTVTPMGGRTLKNWILNPLLNLADIEKRQNCVSNFYDNPLAYEELKVILADISDIE 339 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKND--LPEELRGAVEKLKKLPQSLEK 433 R +SR+ G P+D+A + + + N F K +P + K+ + + L Sbjct: 340 RIMSRVGTGNAGPRDLAGLARSLAVHGALKNWFDKYGAVVPYLKENILSKITVI-EDLAN 398 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L+S + + P DGG ++ G +A LD+ R+ ++ S + +A L + +T I LK+ Sbjct: 399 LLNSAIEPNPPIKISDGGIIKQGFNAELDDLRNTKNNSSKTLAELCEREKAKTGISTLKV 458 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N+ GY+IEV+ + + + +QT++N RF T EL ++E++I +A Sbjct: 459 GFNSVFGYYIEVSKGQSGKVPFS------YTRKQTLTNAERFITEELKEIEDKILHAEEK 512 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 L +E F+ + + E + + ++ IA +D+ LA AK + +P+ID S Sbjct: 513 ILRLETSLFDSVRKHLAEHIGVMRSFAKAIAELDVYSNLAHCAKVYKFTKPVIDESNILK 572 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 D RHP+VE L S F+ ND DL ++ ++TGPNMGGKS +L+Q A++ Sbjct: 573 AADLRHPVVEACLPLGS---FVPNDIDLG-----GETQISVITGPNMGGKSVYLKQAAVL 624 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 VI+AQMGS+VPA+ AH+GIVDK+ +R+G+ D +A G+STFMVEM ET+ IL T +S + Sbjct: 625 VILAQMGSFVPAASAHVGIVDKIMTRIGAQDAIAMGQSTFMVEMKETSHILASCTPKSLI 684 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLS---KSLKRFHNA 788 +LDE+GRGT+T DG+SIAWA E+L++ + + L ATH+ ELTDL K +K FH Sbjct: 685 LLDEVGRGTSTFDGISIAWAITEFLYKPHGGGAKVLFATHYFELTDLENKYKGIKNFHAE 744 Query: 789 TLQVSDSN--EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN 846 + D++ I FL+K+ G D SYGI VG+LAGLP TVI RA ++K E Sbjct: 745 VQEYKDADGQSKIAFLYKIKEGAGDKSYGIHVGELAGLPATVIVRAKKVIKDLE------ 798 Query: 847 QKDMRLYYPEIQTKESKNNLSKNDKLF----VEKIKCLNLDEMSPLTALKTLYAVK 898 + T SK LF VE+IK +N D ++P+ AL+ + K Sbjct: 799 --------AKKGTSVSKKEDDIVGDLFSSPIVEEIKLVNTDAVTPMQALQMILEWK 846 >gi|240081884|ref|ZP_04726427.1| DNA mismatch repair protein [Neisseria gonorrhoeae FA19] gi|268597981|ref|ZP_06132148.1| DNA mismatch repair protein mutS [Neisseria gonorrhoeae FA19] gi|268551769|gb|EEZ46788.1| DNA mismatch repair protein mutS [Neisseria gonorrhoeae FA19] Length = 864 Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust. Identities = 314/893 (35%), Positives = 476/893 (53%), Gaps = 62/893 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM+QY+ IK+ + D LVFYRMGDFYELF DDA+ A++ L ITLT RG+ G I M G Sbjct: 7 SPMMQQYLGIKAQHTDKLVFYRMGDFYELFLDDAVEAAKLLDITLTTRGQMDGVPIKMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ +L+K+G +AICEQ+ + K V R VVR+VTPGTLT+ LL Sbjct: 67 VPFHAAEQYLARLVKLGKSVAICEQV-----GEVGAGKGPVERKVVRIVTPGTLTDSALL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 ++N ++AV+ + +AW + +G FK + D+L ++ R+ EI+ + + Sbjct: 122 EDKETNRIVAVSPDKKYIGLAWASLQSGEFKTKLTTADKLNDELARLQAAEILLPDSK-- 179 Query: 206 HAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQ---VEKTAAA 261 L LG V + N + F E + +Y+ + FG S+ V AA Sbjct: 180 --NAPQLQTALG---VTRLNAWQFAADAGEKLLTEYFGCQDLRGFGLDSKEHAVSIGAAG 234 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 A ++YI+ TQ + + E + +D+A R NLEI +TLSG + +L +D Sbjct: 235 ALLNYIRLTQNLMPQHLDGLSLETDSQYIGMDAATRRNLEITQTLSGKKTPTLFSILDGC 294 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G RL A + PL + I R +++ P+Q LKS D+ R +R+ Sbjct: 295 ATHMGSRLLALWLHHPLRNRAHIRARQEAVTALESQ---YEPLQCHLKSIADIERIAARI 351 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL-PQSL--EKTLSSM 438 +G P+D+A +RD + I DL +E LK + P++L +TL + Sbjct: 352 AVGNARPRDLASLRDSLFELAQI-------DLSATGSSLLETLKAVFPETLPVAETLKAA 404 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + + + +DG + G LDE R +++ + L+ K E T + LK++ N Sbjct: 405 VMPEPSVWLKDGNVINHGFHPELDELRRIQNHGDEFLLDLEAKERERTGLSTLKVEFNRV 464 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 G++IE++ + A D + RQT+ N RF T EL E+++ A + AL +E Sbjct: 465 HGFYIELSKTQAEQAPAD------YQRRQTLKNAERFITPELKAFEDKVLTAQDQALALE 518 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F+ + + L A++ A +D+ + LAKE+N+ RP + +++GR Sbjct: 519 KQLFDGVLKNLRTALPQLQKAAKAAAALDVLSTFSALAKERNFVRPEFADYPVVHIENGR 578 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ ++ F AN DL + +L LLTGPNMGGKST++RQ ALIV++A Sbjct: 579 HPVVEQQVRH-----FTANHTDLD-----HKHRLMLLTGPNMGGKSTYMRQVALIVLLAH 628 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 G +VPA A IG VD++F+R+G++D+LAS RSTFMVEM ETA IL+ AT QS V++DE+ Sbjct: 629 TGCFVPADAATIGPVDQIFTRIGASDDLASNRSTFMVEMSETAYILHHATEQSIVLMDEV 688 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGL++A A E+L + N+ L ATH+ ELT L ++ N L + Sbjct: 689 GRGTSTFDGLALAHAIAEHLLQKNKSFSLFATHYFELTYLPEAHAAAVNMHLSALEQGRD 748 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 I+FLH++ PG A SYGI V KLAGLP + A L E N+ + ++ Sbjct: 749 IVFLHQIQPGPAGKSYGIAVAKLAGLPVRALKAAQKHLNGLENQAAANRPQLDIF----S 804 Query: 859 TKESKNNLSKNDKLFVEK-------------IKCLNLDEMSPLTALKTLYAVK 898 T S+ N FV+K ++ L+ D ++P AL LY +K Sbjct: 805 TMPSEKGDEPNVDCFVDKAEEKHFEGILAAALENLDPDSLTPREALSELYRLK 857 >gi|295399904|ref|ZP_06809885.1| DNA mismatch repair protein MutS [Geobacillus thermoglucosidasius C56-YS93] gi|294978307|gb|EFG53904.1| DNA mismatch repair protein MutS [Geobacillus thermoglucosidasius C56-YS93] Length = 864 Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust. Identities = 302/893 (33%), Positives = 499/893 (55%), Gaps = 57/893 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY++IK+ PD+ +F+R+GDFYE+FFDDA+ A++ L ITLT R + +PMCG Sbjct: 5 TPMIQQYLDIKAQYPDAFLFFRLGDFYEMFFDDAIKAAQELEITLTSRDGGGDERVPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI++LI G+++AICEQ+E P AK +VRR VV+L+TPGT+ E + L Sbjct: 65 VPYHSAQGYIEQLISKGYKVAICEQVEDPKTAK-----GVVRREVVQLITPGTVMEGRGL 119 Query: 146 SPTDSNYLMAVARIR-TEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 ++NYL V + A+ D+STG +I+ ++ + +++++ I +EI+ + + Sbjct: 120 LEKENNYLATVTLFADGTYGFAYTDLSTGENRITILASFEDVMNELYAIGTKEIVLA-SD 178 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE-KTAAAA 262 E + L E G V + + I G +Q + + A Sbjct: 179 FPSDEQQLLKERYG--------VTISYEDGTEMPEGFATIA-----GGLAQNKLQITFAR 225 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYS 321 + YI +TQ + + + + ID ++ NLE+ T+ S R+ SLL +D + Sbjct: 226 LLHYIIRTQKRRLDHMQPVQVYQVDHYMKIDLYSKRNLELTETIRSKGRKGSLLWLLDET 285 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +T GGRL + + PL D +I RL + I + +++ L+ DV R R+ Sbjct: 286 VTAMGGRLLKQWLDRPLLDRGQIERRLHMVETLIHHYFERQELRERLREVYDVERLAGRV 345 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 G +D+ ++ ++ + ++ L ++ ++L ++ +L LE+++ Sbjct: 346 AYGNVNARDLIQLKKSLQQIPALKDIVAKLADNQAQQLADKLDPCSELVDLLERSIQ--- 402 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 ++ P ++G ++DG + +LD R K IA L+ K E T IK+LKI +N Sbjct: 403 -ENPPLSVKEGNIIKDGYNETLDRFRDASRNGKSWIAQLESKERELTGIKSLKIGYNRVF 461 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IEVT + +L K R+ +QT++N RF T EL + E I A ++ +E Sbjct: 462 GYYIEVTKPNLHLL-----PKGRYERKQTLANAERFITQELKEKEALILEAEEKSIELEY 516 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F + + + L + ++ I+ +D+ + A +++E++Y +P +++ GRH Sbjct: 517 ELFVDIRERVKQYIPRLQSLAKAISELDVLQSFATVSEERHYVKPQFSEHRELVIQAGRH 576 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VEK L Q+ ++ NDC ++ + L L+TGPNM GKST++RQ AL IMAQ+ Sbjct: 577 PVVEKVLGTQT---YVPNDCYMNKERE-----LLLITGPNMSGKSTYMRQIALTAIMAQI 628 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 G +VPA A + I D++F+R+G+AD+L SG+STFMVEM+E + + AT S ++ DEIG Sbjct: 629 GCFVPADKAVLPIFDQVFTRIGAADDLVSGQSTFMVEMLEARNAIVHATQNSLILFDEIG 688 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGT+T DG+++A A IEY+H+ + L +TH+HELTDL +SL + N + + N + Sbjct: 689 RGTSTYDGMALAQAIIEYIHDHIGAKTLFSTHYHELTDLEQSLPKLKNVHVSAVEENGKV 748 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ------------ 847 +FLHK+ G AD SYGI V +LAGLP+++I RA +IL E+ + Sbjct: 749 VFLHKIEEGPADQSYGIHVAELAGLPSSLIRRAEEILAELEQQEEQRKEEQEEPGGKNEA 808 Query: 848 --KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + ++ E +KE + LSK +K +E +K +NL EM+PL AL LY ++ Sbjct: 809 VFEQLSMFAEEKPSKE-ETRLSKKEKKALETLKSVNLLEMTPLEALNKLYEIQ 860 >gi|298694587|gb|ADI97809.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus ED133] Length = 872 Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust. Identities = 320/914 (35%), Positives = 493/914 (53%), Gaps = 91/914 (9%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPMM+QY++IKS D L+F+R+GDFYE+F++DA ASR L ITLTKR I Sbjct: 1 MSNVTPMMQQYLKIKSEYQDCLLFFRLGDFYEMFYEDAKEASRVLEITLTKRDAKKENPI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A+ YI L+ G+++AICEQ+E P + K +VRR VVR+VTPGT+ E Sbjct: 61 PMCGVPYHSADSYIDTLVNNGYKVAICEQMEDP-----KQTKGMVRREVVRIVTPGTVME 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD-RLISDIMRIDPREIIFS 200 + +NY+++ + E A+++ D+STG K++ N + L+++I I+P E++ + Sbjct: 116 QGGVDDKQNNYILSFVMNQPEIALSYCDVSTGELKVTHFNDEATLLNEITTINPNEVVIN 175 Query: 201 EKELSH--------AEYKSLFETLGN--VAVAQPNVFFDHSI---SESRIADYYNITTVD 247 + H E ++ ETL + +V Q +H + + + DY + T Sbjct: 176 DNISDHLKRQINMVTETITVRETLSSEIYSVNQT----EHKLMYQATQLLLDYIHHTQK- 230 Query: 248 TFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS 307 S +E AAI Y+K +D A+ NLE+ ++ Sbjct: 231 --RDLSHIEDVVQYAAIDYMK-----------------------MDFYAKRNLELTESIR 265 Query: 308 -GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK 366 S++ +LL +D + T G R + I PL +I RLD ++ F + I + ++ Sbjct: 266 LKSKKGTLLWLMDETKTPMGARRLKQWIDRPLISKEQIEARLDIVDEFSAHFIERDTLRT 325 Query: 367 ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK 426 L D+ R + R+ G +D+ ++ I NI L N + ++ V +L+ Sbjct: 326 YLNQVYDIERLVGRVSYGNVNARDLIQLKHSISEIPNIKALL--NSMNQDTLVQVNQLEP 383 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 L L+ L L ++ P +DGG + G + LDE K +A LQ K + T Sbjct: 384 LDDLLD-ILEQSLVEEPPISVKDGGLFKVGFNMQLDEYLEASKNGKTWLAELQAKERQRT 442 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 IK+LKI N GYFIE+T ++ L+ S+ ++ +QT+SN RF T EL + E+ Sbjct: 443 GIKSLKISFNKVFGYFIEITRAN---LQNFEPSEFGYMRKQTLSNAERFITDELKEKEDI 499 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 I A + A+ +E + F L + + +E L +++I+ +D + A +A++ NY RP Sbjct: 500 ILGAEDKAIELEYQLFVQLREEVKKYTERLQQQAKIISELDCLQSFAEIAQKYNYTRPSF 559 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 + + + RHP+VE+ + ++ N+C L N ++L+TGPNM GKST+ Sbjct: 560 SENKTLELVESRHPVVERVM---DYNDYVPNNCRLD-----NETFIYLITGPNMSGKSTY 611 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ A+I IMAQMG+YVP A + I D++F+R+G+AD+L SG+STFMVEM+E L Sbjct: 612 MRQVAIISIMAQMGAYVPCKEAVLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTY 671 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT S +I DEIGRGT+T DGL++A A IEY+ ET+ + L +TH+HELT L ++L Sbjct: 672 ATEDSLIIFDEIGRGTSTYDGLALAQAMIEYVAETSHAKTLFSTHYHELTTLDQALPSLK 731 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE------ 840 N + ++ +IFLHKV G D SYGIQV KLA LP VISRA IL FE Sbjct: 732 NVHVAANEYKGELIFLHKVKDGAVDDSYGIQVAKLADLPEKVISRAQVILSEFEASAGKK 791 Query: 841 ------KLYHHNQKDMRLYYPEIQTKESKNNLSKND------KLF-------VE-KIKCL 880 K+ N+ ++ + +E+ + LS+ D LF +E +IK L Sbjct: 792 SSISNLKMV-ENEPEINQENSSLSVEETTDTLSQKDFEQASFDLFENDQESEIELQIKNL 850 Query: 881 NLDEMSPLTALKTL 894 NL M+P+ AL L Sbjct: 851 NLSNMTPIEALVKL 864 >gi|323441077|gb|EGA98784.1| DNA mismatch repair protein MutS [Staphylococcus aureus O11] gi|323443946|gb|EGB01557.1| DNA mismatch repair protein MutS [Staphylococcus aureus O46] Length = 872 Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust. Identities = 320/914 (35%), Positives = 493/914 (53%), Gaps = 91/914 (9%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPMM+QY++IKS D L+F+R+GDFYE+F++DA ASR L ITLTKR I Sbjct: 1 MSNVTPMMQQYLKIKSEYQDCLLFFRLGDFYEMFYEDAKEASRVLEITLTKRDAKKENPI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A+ YI L+ G+++AICEQ+E P + K +VRR VVR+VTPGT+ E Sbjct: 61 PMCGVPYHSADSYIDTLVNNGYKVAICEQMEDP-----KQTKGMVRREVVRIVTPGTVME 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD-RLISDIMRIDPREIIFS 200 + +NY+++ + E A+++ D+STG K++ N + L+++I I+P E++ + Sbjct: 116 QGGVDDKQNNYILSFVMNQPEIALSYCDVSTGELKVTHFNDEATLLNEITTINPNEVVIN 175 Query: 201 EKELSH--------AEYKSLFETLGN--VAVAQPNVFFDHSI---SESRIADYYNITTVD 247 + H E ++ ETL + +V Q +H + + + DY + T Sbjct: 176 DNISDHLKRQINMVTETITVRETLSSEIYSVNQT----EHKLMYQATQLLLDYIHHTQK- 230 Query: 248 TFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS 307 S +E AAI Y+K +D A+ NLE+ ++ Sbjct: 231 --RDLSHIEDVVQYAAIDYMK-----------------------MDFYAKRNLELTESIR 265 Query: 308 -GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK 366 S++ +LL +D + T G R + I PL +I RLD ++ F + I + ++ Sbjct: 266 LKSKKGTLLWLMDETKTPMGARRLKQWIDRPLISKEQIEARLDIVDEFSAHFIERDTLRT 325 Query: 367 ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK 426 L D+ R + R+ G +D+ ++ I NI L N + ++ V +L+ Sbjct: 326 YLNQVYDIERLVGRVSYGNVNARDLIQLKHSISEIPNIKALL--NSMNQDTLVQVNQLEP 383 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 L L+ L L ++ P +DGG + G + LDE K +A LQ K + T Sbjct: 384 LDDLLD-ILEQSLVEEPPISVKDGGLFKVGFNMQLDEYLEASKNGKTWLAELQAKERQRT 442 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 IK+LKI N GYFIE+T ++ L+ S+ ++ +QT+SN RF T EL + E+ Sbjct: 443 GIKSLKISFNKVFGYFIEITRAN---LQNFEPSEFGYMRKQTLSNAERFITDELKEKEDI 499 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 I A + A+ +E + F L + + +E L +++I+ +D + A +A++ NY RP Sbjct: 500 ILGAEDKAIELEYQLFVQLREEVKKYTERLQQQAKIISELDCLQSFAEIAQKYNYTRPSF 559 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 + + + RHP+VE+ + ++ N+C L N ++L+TGPNM GKST+ Sbjct: 560 SENKTLELVESRHPVVERVM---DYNDYVPNNCRLD-----NETFIYLITGPNMSGKSTY 611 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ A+I IMAQMG+YVP A + I D++F+R+G+AD+L SG+STFMVEM+E L Sbjct: 612 MRQVAIISIMAQMGAYVPCKEAVLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTY 671 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT S +I DEIGRGT+T DGL++A A IEY+ ET+ + L +TH+HELT L ++L Sbjct: 672 ATEDSLIIFDEIGRGTSTYDGLALAQAMIEYVAETSHAKTLFSTHYHELTTLDQALPSLK 731 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE------ 840 N + ++ +IFLHKV G D SYGIQV KLA LP VISRA IL FE Sbjct: 732 NVHVAANEYKGELIFLHKVKDGAVDDSYGIQVAKLADLPEKVISRAQVILSEFEASADKK 791 Query: 841 ------KLYHHNQKDMRLYYPEIQTKESKNNLSKND------KLF-------VE-KIKCL 880 K+ N+ ++ + +E+ + LS+ D LF +E +IK L Sbjct: 792 SSISNLKMV-ENEPEINQENSNLSVEETTDTLSQKDFEQASFDLFENDQESEIELQIKNL 850 Query: 881 NLDEMSPLTALKTL 894 NL M+P+ AL L Sbjct: 851 NLSNMTPIEALVKL 864 >gi|319789352|ref|YP_004150985.1| DNA mismatch repair protein MutS [Thermovibrio ammonificans HB-1] gi|317113854|gb|ADU96344.1| DNA mismatch repair protein MutS [Thermovibrio ammonificans HB-1] Length = 860 Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust. Identities = 302/826 (36%), Positives = 478/826 (57%), Gaps = 58/826 (7%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKD 80 K TP +RQY+E+K D+++ +RMGDFYE+FF+DA +A+R L I LTKR GK G+ Sbjct: 3 KKVTPALRQYLELKEQYKDAILMFRMGDFYEMFFEDAEVAARELEIALTKRSFGKG-GEK 61 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 PMCGVP H YI KL+K G+++A+CEQ+E P + K +V+R VVR++TPGT Sbjct: 62 APMCGVPYHAVEGYIAKLVKKGYKVAVCEQLEEP-----KPGKKVVKRGVVRVITPGTYF 116 Query: 141 EDQLLSPTDSNYLMAV-ARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 ED+ ++ +LMAV R +A+AW ++S+G F +T + L S + + P+E+I Sbjct: 117 EDE----SEDRFLMAVFPASRGRFAVAWAELSSGDFLFTTVDAQGLRSLLNKFRPKEVI- 171 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 L L + A+ Q +F + AD ++ V+ Sbjct: 172 ----LPPGVKLPLVKEELPAALVQERDYFKPELKLPDAADNGELSAVN------------ 215 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL--SGSREQSLLKT 317 A ++++TQ P + P R + ++ID + NLE+ L + SR+ +L T Sbjct: 216 --AIYRFVEETQKEFVPKLKSPRRYTGERYVYIDPYTQRNLELTEPLVENLSRD-TLFST 272 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 ++ + TG G RL I PL ++IN RLD++ ++ +L + + ++L DV R Sbjct: 273 LNRTKTGMGRRLLKFWILHPLRSVSEINRRLDAVGELKESFLLADELSELLSGVYDVERL 332 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTL 435 +++ G PK++A +R +++ I L ++L +L + L + LE+ Sbjct: 333 VTKATAGIINPKEMASLRASLKALPKIKKLLESFSSELLSQLASTFDDLYDIYCELER-- 390 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 +L D P ++GG +R G LDE R +++ +++II ++ + + T I++LK+ Sbjct: 391 --VLVDSPPLSPKEGGLIRKGVHPELDELRRIKENAEQIIREIEERERKRTGIQSLKVGF 448 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 NN GY+IEV+ + ++ D +I RQT+ N RF T EL + E ++ +A Sbjct: 449 NNVFGYYIEVSKPNLHLVPSD------YIRRQTLVNAERFITPELKEFEEKVLSAQERIE 502 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 IE E F+ L I +++ + ++ +A ID+ ++ A +A++ NY RP + + + Sbjct: 503 KIEYELFKELRRFISDRASRIVETAEKLATIDVLLSFAKVARDFNYTRPEVGDFYEVEIV 562 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLL-TGPNMGGKSTFLRQNALIV 674 GRHP++E++L+++ FI ND L N + +LL TGPNMGGKS FLRQ ALIV Sbjct: 563 QGRHPVLERSLQEE----FIPNDTTL------NREQFFLLITGPNMGGKSVFLRQTALIV 612 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 MAQMGS+VPA A IG+VD++F+RVG++D+L+ G STFM+EM+ETA+IL AT +S +I Sbjct: 613 AMAQMGSFVPAESARIGVVDRIFTRVGASDSLSRGLSTFMMEMVETANILKNATEKSLII 672 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDEIGRGT+T DG+SIA A +EY+ + L ATH+HELT+L ++ N + V + Sbjct: 673 LDEIGRGTSTYDGMSIARAVVEYICNRIGAKTLFATHYHELTELEGQVRGVKNYHVCVKE 732 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + ++F H+V PG ++ SYGI V +LAGLP V+ RA +ILK+ E Sbjct: 733 VDGKVVFTHRVKPGPSEKSYGIHVAELAGLPEEVVERAREILKSLE 778 >gi|161871024|ref|YP_001600204.1| DNA mismatch repair protein MutS [Neisseria meningitidis 053442] gi|189083161|sp|A9M4L8|MUTS_NEIM0 RecName: Full=DNA mismatch repair protein mutS gi|161596577|gb|ABX74237.1| DNA mismatch repair protein [Neisseria meningitidis 053442] Length = 864 Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust. Identities = 305/889 (34%), Positives = 475/889 (53%), Gaps = 54/889 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM+QY+ IK+ + D LVFYRMGDFYE+FFDDA+ A++ L ITLT RG+ G I M G Sbjct: 7 SPMMQQYLGIKAQHTDKLVFYRMGDFYEMFFDDAVEAAKLLDITLTTRGQMDGVPIKMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ +L+K+G +AICEQ+ + K V R VVR+VTPGTLT+ LL Sbjct: 67 VPFHAAEQYLARLVKLGKSVAICEQV-----GEVGAGKGPVERKVVRIVTPGTLTDSALL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 ++N ++AV+ + +AW + +G FK + D+L ++ R+ EI+ + Sbjct: 122 EDKETNRIVAVSPDKKYIGLAWASLQSGEFKTKLTTVDKLDDELARLQAAEILLPDS--- 178 Query: 206 HAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQ---VEKTAAA 261 K+ + V + N + F E + +Y+ + FG + V AA Sbjct: 179 ----KNTPQLQTASGVTRLNAWQFAADAGEKLLTEYFGCQDLRGFGLDGKEHAVAIGAAG 234 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 A ++YI+ TQ + + E + +D+A R NLEI +TLSG + +L+ T+D Sbjct: 235 ALLNYIRLTQNLMPQHLDGLSLETDSQYIGMDAATRRNLEITQTLSGKKSPTLMSTLDLC 294 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G RL A + PL + I R +++ P+Q LK+ D+ R +R+ Sbjct: 295 ATHMGSRLLALWLHHPLRNRAHIRARQEAVAALESQ---YKPLQCRLKNIADIERIAARI 351 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL-PQSL--EKTLSSM 438 +G P+D+A +RD + + I DL +E LK + P++L +TL + Sbjct: 352 AVGNARPRDLAALRDSLFALSEI-------DLSANGSSLLETLKAVFPETLPVAETLKAA 404 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + + + +DG + G LDE R +++ + L+ K E T + LK++ N Sbjct: 405 VMPEPAVWLKDGNVINHGFHPELDELRRIQNHGDEFLLDLEAKERERTGLSTLKVEFNRV 464 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 G++IE++ + A D + RQT+ N RF T EL E+++ A AL +E Sbjct: 465 HGFYIELSKTQAEQAPAD------YQRRQTLKNAERFITPELKAFEDKVMTAQEQALALE 518 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F+ + + L A++ A +D+ + LAKE+N+ RP + +++GR Sbjct: 519 KQLFDGVLKNLQTALPQLQKAAKAAAALDVLSTFSALAKERNFVRPEFADYPVIHIENGR 578 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ ++ F AN +L + +L LLTGPNMGGKST++RQ ALIV++A Sbjct: 579 HPVVEQQVRH-----FTANHTNLD-----HKHRLMLLTGPNMGGKSTYMRQVALIVLLAH 628 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 G +VPA A IG +D++F+R+G++D+LAS RSTFMVEM ETA IL+ AT QS V++DE+ Sbjct: 629 TGCFVPADAATIGPIDQIFTRIGASDDLASNRSTFMVEMSETAYILHHATEQSLVLMDEV 688 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGL++A A E+L + N+ L ATH+ ELT L ++ N L + + Sbjct: 689 GRGTSTFDGLALAHAVAEHLLQKNKSFSLFATHYFELTKLPEAHATAVNMHLSALEQGQD 748 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY---- 854 I+FLH + PG A SYGI V KLAGLP + A L E N+ + ++ Sbjct: 749 IVFLHHIEPGPASKSYGIAVAKLAGLPVRALKSAQKHLNELEDQAAANRPQLDIFSTMPS 808 Query: 855 -----PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P + + K + + ++ L+ D ++P AL LY +K Sbjct: 809 EKGDEPNVDSFVDKAEEKHFEGILAAALEKLDPDSLTPREALSELYRLK 857 >gi|160897717|ref|YP_001563299.1| DNA mismatch repair protein MutS [Delftia acidovorans SPH-1] gi|160363301|gb|ABX34914.1| DNA mismatch repair protein MutS [Delftia acidovorans SPH-1] Length = 911 Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust. Identities = 310/910 (34%), Positives = 477/910 (52%), Gaps = 61/910 (6%) Query: 13 SEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTK 72 S Q +L + TPMM+QY+ IK PD+LVFYRMGDFYELFF DA +R L ITLT Sbjct: 35 STQPSPAPDLSAHTPMMQQYLGIKINYPDTLVFYRMGDFYELFFGDAEKVARLLDITLTT 94 Query: 73 RGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVR 132 RG+ G+ IPM GVP H +Y+ +LIK+G +AICEQ+ + K V R VVR Sbjct: 95 RGQTAGQPIPMAGVPFHALENYLGRLIKLGESVAICEQV-----GEVGAAKGPVERKVVR 149 Query: 133 LVTPGTLTEDQLLSPTDSNYLMAVARI-RTEWAIAWIDISTGIFKISTSNHDRLISDIMR 191 +VTPGTLT+ +LLS L+++ R +AW+ ++ G ++ +HD L + I R Sbjct: 150 VVTPGTLTDSELLSDKSEAILLSLHTAGRQRCGLAWMAVTQGRIHLAECSHDELGAWISR 209 Query: 192 IDPREIIFSEKELSHAEYKSLFETLGNVAVA-----QPNVFFDHSISESRIADYYNITTV 246 I P E+I+S E +SLF ++A +P+ FD + E ++ + ++ Sbjct: 210 IAPSELIYSAGVTERFE-QSLFALRHGGSIACPLSPRPDWQFDGGLGERKLLELLGAASL 268 Query: 247 DTFGSFS-QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT 305 + + + A+AA +SY + TQ + I + + + + A R NLE+++T Sbjct: 269 KAWEAEDLSLAHGASAALLSYAEHTQGRSLSHIHALQVQRDDELIALPLATRRNLELVKT 328 Query: 306 LSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFF--IQNPILINP 363 L G +L +D +TG G RL + P D T+ RL++ + P Sbjct: 329 LRGEDSPTLFSLLDTCMTGMGSRLLKAWLLEPRRDRTQAMARLEATRALQGASAGGMAAP 388 Query: 364 IQKI---LKSSPDVPRSLSR-----------LKIGRGEPKDIAVIRDGIRSGINILNLFL 409 Q++ LK DV R +R + +GR K + + G ++ LF Sbjct: 389 WQQLREQLKGVSDVERITARTALRQVRPRELVGLGRTLHKAAVLAQAGQTPSAHLTQLFA 448 Query: 410 KNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRD 469 PE G E L + + ++ RDGG G DA LDE R++++ Sbjct: 449 DLQPPE---GCAELLVR-----------AIMEEPAALVRDGGVFATGYDAELDELRAIQN 494 Query: 470 QSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTM 529 + L+ K T I NL+++ N G++IE+T+S + +R+ RQT+ Sbjct: 495 NCDDFLLELEAKEKLLTGIPNLRVQFNKVHGFYIEITNSYKDAVP------ERYRRRQTL 548 Query: 530 SNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDIS 589 N R+ T EL E++ +A AL E +E L + + +L + IA ID+ Sbjct: 549 KNAERYITPELKAFEDKALSAQERALQREKFLYEQLLDQLQPHVPALTRVAGAIAAIDVL 608 Query: 590 IALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNS 649 LA + N+C P N ++ GRHP+VE + + SS FIAN ++ + Sbjct: 609 CTLAERSLTLNWCAPEFVNHPCIEIEAGRHPVVEARMAETSSGSFIANHTRMNA-----N 663 Query: 650 GKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASG 709 ++ ++TGPNMGGKST++RQ ALIV++A MGS+VPAS +G +D + +R+G+AD+LA+ Sbjct: 664 TRMQIITGPNMGGKSTYMRQVALIVLLASMGSHVPASSCRLGPIDAIHTRIGAADDLANA 723 Query: 710 RSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLA 769 +STFM+EM E A IL+ AT S V++DEIGRGT+T DGL++A LH+ R L A Sbjct: 724 QSTFMMEMTEAAQILHSATPHSLVLMDEIGRGTSTFDGLALASGIATQLHDRTRAFTLFA 783 Query: 770 THFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVI 829 TH+ ELT+L + N + ++S + I+FLH++ PG A SYGIQV KLAG+P V+ Sbjct: 784 THYFELTELPAKARAAVNMHVSAAESGQDIVFLHEIQPGPASRSYGIQVAKLAGMPAGVL 843 Query: 830 SRAYDILKTFEKLYHHNQKDMRLY-YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPL 888 A L+ E + + L+ P++ ES+++ + + +N D +SP Sbjct: 844 HHARHALEALEAHADEGRLQVDLFDAPDMPEPESRHD------PLAQALAAINPDALSPR 897 Query: 889 TALKTLYAVK 898 AL+ LY +K Sbjct: 898 EALEALYQLK 907 >gi|289550910|ref|YP_003471814.1| DNA mismatch repair protein MutS [Staphylococcus lugdunensis HKU09-01] gi|289180442|gb|ADC87687.1| DNA mismatch repair protein MutS [Staphylococcus lugdunensis HKU09-01] Length = 869 Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust. Identities = 320/902 (35%), Positives = 485/902 (53%), Gaps = 75/902 (8%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPMM+QY+ IK+ D L+F+R+GDFYE+FFDDA ASR L ITLTKR K I Sbjct: 1 MANVTPMMQQYLNIKAQYNDCLLFFRLGDFYEMFFDDAKEASRVLEITLTKRDAKKEKPI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+AN YI+ LI G+++AICEQ+E P + K +V+R VVR+VTPGT+ E Sbjct: 61 PMCGVPYHSANSYIETLINNGYKVAICEQMEDP-----KQTKGMVKREVVRIVTPGTVME 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFS 200 + +NY+++ + + + A+++ D+STG K + L+++I I+P EI+ + Sbjct: 116 QGGVDDKQNNYILSFIQRQNQIALSYCDVSTGELKTTQFEGTSTLLNEITTINPNEIVVN 175 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 + LS A + + T + V +ES + Y + F A Sbjct: 176 QA-LSDALTRQINLTTETITV-----------NESLSQNVYEVNPKKETLMFE-----AT 218 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFID-----SAARSNLEILRTLS-GSREQSL 314 + YI TQ + I ED++ ID A+ NLE+ ++ S++ +L Sbjct: 219 QLLLDYIHHTQKRDLSHI-----EDVKEYAAIDFMKMDYYAKRNLELTESIRLKSKKGTL 273 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D + T G R + I PL +I RL++++ I I + ++ L DV Sbjct: 274 LWLMDETKTPMGARRLKQWIDRPLIQQQEIEHRLNAVDQLINAFIERDTLRGYLNQVYDV 333 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R + R+ G +D+ ++ I +I L L+ D + +KL+ L L+ Sbjct: 334 ERLVGRVSYGNVNARDLIQLKHSISEIPHIKQLLLEMD--QTFSQQFDKLEPLDDLLD-V 390 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L + + ++ P +DGG + G + LDE K +A LQ + E+T IK+LKI Sbjct: 391 LENSIVEEPPISVKDGGLFKRGFNQQLDEYLDASQNGKSWLAQLQAREREKTGIKSLKIS 450 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N GYFIE+T ++ + + +QT+SN RF T EL + E+ I A + A Sbjct: 451 FNKVFGYFIEITRANLQGFNP---TDYGYYRKQTLSNAERFITDELKEKEDIILGAEDKA 507 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E + F L I +E L +++I+ +D + A +A+ NY RP + + Sbjct: 508 VELEYQLFVKLREHIKTYTEKLQQQAKIISELDCLQSFAEIAQRYNYTRPQFSENKTLNL 567 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 ++ RHP+VE+ + ++ NDC L+ N ++L+TGPNM GKST++RQ A+I Sbjct: 568 ENSRHPVVERVMDHND---YVPNDCLLNKEN-----FIYLITGPNMSGKSTYMRQVAIIS 619 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMAQMGS+VP A + I D++F+R+G+AD+L SG+STFMVEM+E L AT S +I Sbjct: 620 IMAQMGSFVPCDKATLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTYATADSLII 679 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 DEIGRGT+T DGL++A + IEY+ +T+ + L +TH+HELTDL + L N + + Sbjct: 680 FDEIGRGTSTYDGLALAQSMIEYVAKTSHAKTLFSTHYHELTDLDQELSCLKNVHVAADE 739 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE-------KLYHHNQ 847 +IFLHKV G D SYGIQV KLA LPN VI RA IL FE ++ + Sbjct: 740 YQGELIFLHKVKDGAVDDSYGIQVAKLADLPNEVIERAQVILDQFEQKSTQSSQIRSQDN 799 Query: 848 KDMRLYYPEIQT---KESKNNLSKN----------DKLFVE-----KIKCLNLDEMSPLT 889 KD Y E Q+ K+S+N K D + E +I+ LN+ M+PL Sbjct: 800 KDA--YIAESQSAYLKDSENQAVKPAYEQTTFSLFDDVTTESEIEAEIRTLNISNMTPLD 857 Query: 890 AL 891 AL Sbjct: 858 AL 859 >gi|256847968|ref|ZP_05553412.1| DNA mismatch repair protein MutS [Lactobacillus coleohominis 101-4-CHN] gi|256715028|gb|EEU30005.1| DNA mismatch repair protein MutS [Lactobacillus coleohominis 101-4-CHN] Length = 877 Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust. Identities = 304/907 (33%), Positives = 493/907 (54%), Gaps = 76/907 (8%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TPMM QY ++K PD+ +FYR+GDFYELF DDA+ ++ L +TLT R IP Sbjct: 6 KKLTPMMEQYQKVKDQYPDAFLFYRLGDFYELFNDDAIKGAQLLELTLTSRSHSAKNPIP 65 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT---L 139 MCGVP +Y+ LI G+++AICEQ+E P +AK +V+R V RLVTPGT L Sbjct: 66 MCGVPHRAVENYVDILIDKGYKVAICEQMEDPKKAK-----GMVKRAVTRLVTPGTQMDL 120 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREII 198 DQ S +NYL AV +++ +A+ D+STG K +T L+++++ + RE++ Sbjct: 121 KGDQAQS---NNYLTAVYLDGSDYCLAYADLSTGELKTTTFQQQSELMNELINLQTREVV 177 Query: 199 FSEKELSHAEYKSLFETLG--NVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 EK +S+ + LG N+ ++ S+S++A ++ + T +Q + Sbjct: 178 HLEKLP-----QSIIDELGKRNILIS----------SQSQLAKEAEVSYL-TQNLENQNQ 221 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLL 315 + A +SY+ TQ + + + S + ID +++NLE++ L SG R+ +L+ Sbjct: 222 QHVVAILVSYLLTTQKRSLAHLQIAQSYQPSSFMKIDHYSKTNLELMTNLRSGKRQGTLV 281 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T G RL + PL D KI R D + + N +Q L D+ Sbjct: 282 WLLDETKTAMGSRLLKRWLDRPLIDQQKIEKRQDKVQVLLDNYFERQNLQDELIKVYDLE 341 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEK 433 R R+ G +D+ ++ ++ I + D P +EL ++ L+ + +++ Sbjct: 342 RLAGRVAYGSVNGRDLIQLKTSLQQVPKIKYVLETMDSPVFDELGNRLDPLEDIADLMDQ 401 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 ++ DD P DGG ++D + LD R + K+ IA LQ K + T I NLKI Sbjct: 402 AIN----DDPPISVTDGGVIKDHYNDQLDNYRDAMNNGKQWIADLQQKERQTTGINNLKI 457 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N+ GY+IEVT + L KDR+ +QT++N RF+T EL + E I A Sbjct: 458 GYNHVFGYYIEVTKVNLDKL-----PKDRYERKQTLTNAERFSTPELKEKEALILGAQEK 512 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + +E + F + + E L ++ ++ +D+ + A+++++ ++ RP +++ + Sbjct: 513 STALEYDLFVEVREQVKTAIERLQALAEALSELDVLQSFAVVSEKYHFVRPELNHDHQLM 572 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +K+GRHP+VEK + Q ++ ND + D + L+TGPNM GKST++RQ AL Sbjct: 573 IKNGRHPVVEKFMGHQE---YVPNDVQMGQDTD-----ILLITGPNMSGKSTYMRQLALS 624 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MAQMG ++PA A++ I D++F+R+G+AD+L SG STFMVEM+E + L AT S + Sbjct: 625 AVMAQMGCFIPAEKANMPIFDQIFTRIGAADDLVSGESTFMVEMMEANNALLHATRNSLI 684 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 + DEIGRGTAT DG+++A A IEY+H + L +TH+HELT L + L + N + + Sbjct: 685 LFDEIGRGTATYDGMALAQAIIEYVHNNVHAKTLFSTHYHELTGLDQQLDKLQNVHVGAT 744 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH-------- 845 + N +IFLHKV G AD SYGI V KLAG+P T++ RA IL++ E + Sbjct: 745 EENGELIFLHKVTDGPADKSYGIHVAKLAGMPATLLKRANHILQSLESEHEDDHVAGATV 804 Query: 846 ---------NQKDMRLYYPEIQTKE--------SKNNLSKNDKLFVEKIKCLNLDEMSPL 888 N+ + + YP Q + + N +NDK+ +++++ L+L M+P+ Sbjct: 805 TESKEVNTVNESNTQPQYPVEQDGQLELFSPAPKQPNHRRNDKV-LKQLQGLDLMSMTPM 863 Query: 889 TALKTLY 895 + +Y Sbjct: 864 EVMNQVY 870 >gi|193213235|ref|YP_001999188.1| DNA mismatch repair protein MutS [Chlorobaculum parvum NCIB 8327] gi|238692657|sp|B3QPY5|MUTS_CHLP8 RecName: Full=DNA mismatch repair protein mutS gi|193086712|gb|ACF11988.1| DNA mismatch repair protein MutS [Chlorobaculum parvum NCIB 8327] Length = 876 Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust. Identities = 288/831 (34%), Positives = 464/831 (55%), Gaps = 40/831 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TPMMRQY+E+K P+ ++ +R+GDFYE F DDA+ S L I LTKR +IP Sbjct: 10 KEPTPMMRQYLEVKERYPEYVLLFRVGDFYETFLDDAVTVSAALNIVLTKRSNGSAGEIP 69 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 + G P H + YI KL+ G ++A+C+Q+E P AK +V+R + +VTPG D Sbjct: 70 LAGFPHHASEGYIAKLVTKGFKVAVCDQVEDPALAK-----GIVKREITDIVTPGITYSD 124 Query: 143 QLLSPTDSNYLMAVA---RIRTEWA-IAWIDISTGIFKISTSNHDRLISDIMRIDPREII 198 ++L +NYL AVA R R A +A++D++T F+++ L + + P EI+ Sbjct: 125 KILDDRHNNYLCAVALFKRGREHLAGVAFVDVTTAEFRMTELPVAELKDFLQSLHPSEIL 184 Query: 199 FS--EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 S +KEL SL +++ + F + + +++ ++ FG VE Sbjct: 185 ISSRDKELR----DSLAKSMNTLFTVLDEWMFSAEQASQVLENHFKTHSLKGFG-IDGVE 239 Query: 257 --KTAAAAAISYI---KKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSR 310 + AA A + Y+ K+ + IG E + T+ +D R NLEI+ ++ GS Sbjct: 240 GGRIAAGAILQYLEEAKQGSLKYLVRIGLVESAE---TMTLDIQTRRNLEIISSMQDGSL 296 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 SLL+ ID + G RL + PL + R D++ +++ + +++L Sbjct: 297 NGSLLEVIDRTKNPMGARLLRRWLLHPLRKLEAVVQRHDAVEELLESDSMREESRQLLGG 356 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS 430 D+ R+L+R+ R P+++ ++ + I L L + + LR ++L LP+ Sbjct: 357 IIDLERALARIATSRAMPREVRLLGSSF-ALIPQLKAMLASCEAQRLRHLADRLDSLPE- 414 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L +T+ L + RDGG++R G LDE R++ ++ + +Q +T I Sbjct: 415 LAETIERALDPEASGTLRDGGYIRAGYHEELDELRAISSGARDRLLEIQQAERSKTSIST 474 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+++N GY+IEV+ +++ + + E K QT+ N R+T L + E +I A Sbjct: 475 LKVQYNKVFGYYIEVSRANSDKVPEYYEKK------QTLVNAERYTIPALKEYEEKILTA 528 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 + +E F+ L A+ ++ S+ + +A +D A A E YCRP ++ T Sbjct: 529 EEKSQFLEHRLFQELCAAVAAEAASIQKTAAALAELDCLACFASCADEYRYCRPAMNEGT 588 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 + GRHP++E+ L + +P++ANDC + + +L ++TGPNM GKS++LRQ Sbjct: 589 ELSITGGRHPVLERILG--ADEPYVANDCRVG-----SDQQLLIITGPNMAGKSSYLRQA 641 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 L+V++AQ+GS+VPA A IG+VD++F+RVG++DNL SG STF+VEM E ASILN AT + Sbjct: 642 GLVVLLAQVGSFVPAESAEIGLVDRIFTRVGASDNLTSGESTFLVEMNEAASILNNATER 701 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S ++LDEIGRGT+T DG+SIAW+ E++H+ R R L ATH+HEL +L +R N Sbjct: 702 SLLLLDEIGRGTSTFDGMSIAWSMCEFIHDRLRARTLFATHYHELAELESRFERIVNFNA 761 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 V ++ + +IFL K++ G +D+SYGI+V K+AG+P VI RA +IL E+ Sbjct: 762 TVVETADTVIFLRKIVRGASDNSYGIEVAKMAGMPPEVIERAREILAGMER 812 >gi|293376440|ref|ZP_06622672.1| DNA mismatch repair protein MutS [Turicibacter sanguinis PC909] gi|292644949|gb|EFF63027.1| DNA mismatch repair protein MutS [Turicibacter sanguinis PC909] Length = 879 Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust. Identities = 303/910 (33%), Positives = 500/910 (54%), Gaps = 80/910 (8%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ IK D+ VF+R+GDFYELFF+DA LA++ L I LT R + +PMCG Sbjct: 8 TPMMQQYLTIKENYQDAFVFFRLGDFYELFFEDAQLAAKELEIALTGREAGAEERVPMCG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A++YI +LI+ G+++A+CEQ+E P AK +VRR VVR++TPGT+ L Sbjct: 68 VPHHAADNYINRLIEKGYKVAVCEQVEDPASAK-----GVVRREVVRMLTPGTVMNQNAL 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREIIFSEKE 203 + ++N+++++ ++I + D+STG D L+ +++ + +EI+ Sbjct: 123 NEKENNFIISIVGTTQGYSIVYSDLSTGENYAMNLEKDAQVLMGELISLGCKEIVIG--- 179 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 E K +F+ L A+ Q + F+ + + Y I + S Q A Sbjct: 180 -PDVEIK-MFDNLR--ALKQIVLSFEENCI---LPIEYQILVSEISDSNLQ---AAFGRL 229 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSLLKTID 319 I+Y+ +TQ K +G+ + + L ID +R NLE+ T+ S SR+ SLL +D Sbjct: 230 INYLIRTQ---KSALGHLQPVSLTKNDDFLHIDYNSRRNLELTETIRSKSRQGSLLWLLD 286 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL + I P + I RLD + FI + ++ +++ L D+ R Sbjct: 287 KTKTAMGSRLLKQWIERPCINEQVIKERLDVVEAFIGDFMVKEELKQHLNEVYDLERLSG 346 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT--LSS 437 R+ G +D+ + ++ NI +L + +P +L+K+ T L Sbjct: 347 RIGFGNANARDLLQLNSSLKQIPNIKSLLSQLSIP----SVFSQLEKMVDCTHMTQLLEK 402 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 ++++ P ++GG ++DG + +LDE R + + K I +L+ + E+T IK+LKIK N Sbjct: 403 AIAENPPIGIKEGGIIKDGYNETLDEYRYVINHGKDWILALEAQEREKTGIKSLKIKFNK 462 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IE++ ++ ++ ++ + +QT+ N RF T EL + EN I NA ++ + Sbjct: 463 VFGYYIEISKANLHLIPENA----GYERKQTLVNAERFVTQELKEKENLILNAEEKSIQL 518 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E E F L + + + ++V+A D+ A A +++E Y RP+++ + +KDG Sbjct: 519 EYELFSELRGIVKNEIPKIQQIAKVLAYFDVLQAFATMSEENRYTRPMLNKNHVIEIKDG 578 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VEK LK ++ NDC + P+D + + L+TGPNM GKST++RQ ALI IMA Sbjct: 579 RHPVVEKVLKDVQ---YVENDCIM--PSDLS---ILLITGPNMSGKSTYMRQLALISIMA 630 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+G +VPAS A++ I D++F+R+G+AD+L SG STFMVEM+ET L AT S ++LDE Sbjct: 631 QIGCFVPASSANLPIFDQVFTRIGAADDLVSGHSTFMVEMMETNYALEHATKDSLILLDE 690 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGTAT DG+++A + IEY+H+ + L +TH+HELT L + N ++ + Sbjct: 691 IGRGTATFDGMALAQSIIEYVHDNIGAKTLFSTHYHELTQLEQQCPHLQNRHVRAEEHQG 750 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 +IF+HKV+ G +D SYGI V ++A LP+ +I+RA ++L E +D + P Sbjct: 751 QLIFMHKVMEGPSDKSYGIHVAEIAKLPSPLITRAKELLTALE-------EDKVMIQPAP 803 Query: 858 QTKESKNNLSKNDKL----------------------------FVEKIKCLNLDEMSPLT 889 KE L + +L +E+++ ++L +++P+ Sbjct: 804 VVKEEPKVLGGSGQLSLFEEAKPIVKEVVKVEKKVEIVNPYEDIIEELQSIDLYQLTPMQ 863 Query: 890 ALKTLYAVKA 899 A+ +Y +K Sbjct: 864 AMNAMYEIKV 873 >gi|17017340|gb|AAL33627.1|AF440200_1 MutS [Escherichia coli] Length = 819 Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust. Identities = 301/840 (35%), Positives = 458/840 (54%), Gaps = 62/840 (7%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+ +K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 4 ENFDAHTPMMQQYLRLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 63 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 64 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 118 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 119 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 178 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 179 YAE---DFAEM-SLIEG---RRGLRRRPLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 229 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 230 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 289 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 290 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAGLQPVLRQVGD 346 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 347 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQALR 393 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 394 EKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRE 453 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 454 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 507 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 508 YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYT 567 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNMGG Sbjct: 568 CPTFIDKPGIRITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNMGG 618 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 619 KSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 678 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 679 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 738 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 739 EGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 798 >gi|119357692|ref|YP_912336.1| DNA mismatch repair protein MutS [Chlorobium phaeobacteroides DSM 266] gi|189030709|sp|A1BHN5|MUTS_CHLPD RecName: Full=DNA mismatch repair protein mutS gi|119355041|gb|ABL65912.1| DNA mismatch repair protein MutS [Chlorobium phaeobacteroides DSM 266] Length = 872 Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust. Identities = 308/897 (34%), Positives = 490/897 (54%), Gaps = 50/897 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 + +PMMRQY+++K PD L+ +R+GDFYE FFDDA S L I LT+R ++P Sbjct: 6 REHSPMMRQYLDVKERYPDYLLLFRVGDFYETFFDDAKEVSSALNIVLTRRSNGSSSEVP 65 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M G P H + YI +L+K G+++A+C+Q+E P EAK +VRR + +VTPG D Sbjct: 66 MAGFPHHASEGYIARLVKKGYKVAVCDQVEDPSEAK-----GIVRREITDIVTPGITYSD 120 Query: 143 QLLSPTDSNYLMAVARI----RTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREII 198 ++L +NYL A+A + R A+ID++T FKI+ + + + + P E++ Sbjct: 121 KILDDRHNNYLCALALLKEGRRVVAGAAFIDVTTAEFKIAELLPEEVADFVRSLHPAELL 180 Query: 199 FSEKELSHAEYKSLFETLGN------VAVAQPNVFFDHSISESRIADYYNITTVDTFG-S 251 + KE K FE + V + F + + +A + ++ FG Sbjct: 181 IARKE------KERFEPVRKEFPPDMVVTELDDWMFGEDQASAVLARQFKTHSLKGFGIH 234 Query: 252 FSQVEKTAAAAAISYIKKTQMVNKPTIGYPER-EDIQST--LFIDSAARSNLEILRTLS- 307 + K AA + Y+++T+ + + Y R +Q+T + +D R NLEI+ ++ Sbjct: 235 GNSAGKVAAGVILQYLEETR---QNRLHYITRIGTLQNTDYMTLDLQTRRNLEIISSMQD 291 Query: 308 GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI 367 G+ SLL+ ID + G RL + SPL I RLD++ F L + Sbjct: 292 GTINGSLLQVIDRTANPMGARLIRRWLQSPLKRLEDIALRLDAVEEFKDFSPLRREVHGH 351 Query: 368 LKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL 427 L D+ R LSR+ R P+++ + S I +L L L+ L ++ Sbjct: 352 LSEINDLERVLSRIATFRSIPREMRQFGSAL-SKIPLLKEALLQTTTARLQALGRSLVEM 410 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 P+ L + + + RDGG++R G LDE R++ +K + +Q + T Sbjct: 411 PE-LVALIEKAVDPEAGASMRDGGYIRAGYHQELDELRTIASTAKDRLLEIQQEERARTS 469 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 I +LK++ N GY+IE++ S+ + D + +QT+ N RFT L + E +I Sbjct: 470 ISSLKVQFNKVFGYYIEISKSNLD------KVPDYYEKKQTLVNAERFTIPALKEYEAKI 523 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 NA ++++E F LS I EQ+ + + VIA ID + A +A+E YC+P + Sbjct: 524 LNAEEKSIVLEQRLFHDLSLLIAEQAALVQTNAAVIAEIDCLASFAAVAEEYGYCKPEVA 583 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 +V GRHP++E+ + + P+++ND D+ +L ++TGPNM GKS++L Sbjct: 584 GHDRLLVTGGRHPVLERMMS--TDDPYVSNDLLF----DRKQ-RLLIITGPNMAGKSSYL 636 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ LIV++AQ GS+VPA A IG+VD++F+RVG++DNLASG STF+VEM E ASILN A Sbjct: 637 RQAGLIVLLAQAGSFVPAQKAEIGLVDRIFTRVGASDNLASGESTFLVEMNEAASILNNA 696 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 T++S ++LDEIGRGT+T DG+SIAW+ E++H++ R L ATH+HEL +L L+ N Sbjct: 697 TSKSLLLLDEIGRGTSTSDGMSIAWSMSEFIHDSIGARTLFATHYHELAELETRLQGVVN 756 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ 847 V ++ E +IFL K++ G +D+SYGI+V ++AG+P VI RA +IL EK + Sbjct: 757 YNATVIETAEKVIFLRKIVRGASDNSYGIEVARMAGMPQEVIVRAKEILAGMEK----RE 812 Query: 848 KDMR-LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTLE 903 D+ + P I++ + + + D I+ L+LD ++PL AL L ++ L+ Sbjct: 813 IDVSGIKQPSIESMQI-SLFEEADSRLRTAIENLDLDRLTPLDALIELKKLQDLALK 868 >gi|294675138|ref|YP_003575754.1| DNA mismatch repair protein MutS [Prevotella ruminicola 23] gi|294472318|gb|ADE81707.1| DNA mismatch repair protein MutS [Prevotella ruminicola 23] Length = 874 Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust. Identities = 285/824 (34%), Positives = 465/824 (56%), Gaps = 31/824 (3%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG-KDI 81 K TPMM+Q+ ++K+ +PD+++ +R GDFYE + +DA+ AS+ LGITLT R G K Sbjct: 7 KELTPMMKQFFDLKAKHPDAVMLFRCGDFYETYCEDAITASKILGITLTHRSNGAGGKGD 66 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 M G P H + Y+ KLI+ G R+AIC+Q+E P KK LV+R + LVTPG Sbjct: 67 EMAGFPHHALDTYLPKLIRAGKRVAICDQLEDPKLTKK-----LVKRGITELVTPGVAMS 121 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 D +L+ ++N+L A+ ++ + +A++DISTG F D + + P+E+++ Sbjct: 122 DNVLNYKENNFLAAIHFGKSSFGVAFLDISTGEFLTGEGTADYVEKLLGNFSPKEVLYDR 181 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAA 260 +++ F T VF D + + ++ ++N+ + FG Q AA Sbjct: 182 NR--KQDFERNFGTKYFTFQLDDWVFTDQT-GKQKLLQHFNVKNLKGFGVDHLQSGVIAA 238 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 A + Y+++TQ I R + + +D +LE++ + +SLL ID Sbjct: 239 GAILQYLEQTQHTQIGHITSISRIEEDKYVRLDKFTIRSLELVYPMQ-EDGKSLLDVIDK 297 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 +++ GGRL + PL D IN RLD + ++ + P I + D+ R +S+ Sbjct: 298 TVSPMGGRLLRRWLVFPLKDEKPINERLDVVEYYYREPEFRECIDDQIHRIGDLERIISK 357 Query: 381 LKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 +GR P+++ ++ +++ I L+ KN L E+L L +SL + Sbjct: 358 AAVGRVSPREVVQLKTALQAIQPIKTACLYAKN---PTLNRIGEQLN-LCESLRDRIEKE 413 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + +D P GG +RDG +A LDE RS+ K + +Q + A+ET I++LKI +NN Sbjct: 414 IQNDPPQLVAKGGVIRDGVNAELDELRSIAYSGKDYLLKIQEREAQETGIQSLKIGYNNV 473 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY++EV ++ + + ++ +QT++ R+ T EL + E +I A + L +E Sbjct: 474 FGYYLEVRNTYKEQVPPE------WVRKQTLAQAERYITQELKEYEEKILGAEDKILSLE 527 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F L ++ E + + +IA +D ++ A A+E Y RP+ID+S ++ GR Sbjct: 528 GKLFNDLIMSMQEFIPQIQINANIIARLDCLLSFAKAAEENKYIRPVIDSSEVIDIRQGR 587 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP++E+ L + ++ ND L D ++ ++TGPNM GKS LRQ ALIV++AQ Sbjct: 588 HPVIEQELP--LGEYYVPNDILL----DNERQQIIIITGPNMAGKSALLRQTALIVLLAQ 641 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +G +VPA A IG+VDK+F+RVG++DN++ G STFMVEM E ++ILN +++S V+ DE+ Sbjct: 642 IGCFVPAEAARIGLVDKIFTRVGASDNISLGESTFMVEMTEASNILNNVSSRSLVLFDEL 701 Query: 739 GRGTATLDGLSIAWATIEYLHETNRC--RGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 GRGT+T DG+SIAWA +EYLHE + R L ATH+HEL ++ K+ R N + V + + Sbjct: 702 GRGTSTYDGISIAWAIVEYLHENAKGHPRTLFATHYHELNEMEKNFSRIKNYNVSVKEVD 761 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 +IFL K+ G ++HS+GI V ++AG+P +++ RA ILK E Sbjct: 762 GKVIFLRKLERGGSEHSFGIHVAEIAGMPRSIVKRANVILKQLE 805 >gi|188995905|ref|YP_001930157.1| DNA mismatch repair protein MutS [Porphyromonas gingivalis ATCC 33277] gi|188595585|dbj|BAG34560.1| DNA mismatch repair protein MutS [Porphyromonas gingivalis ATCC 33277] Length = 882 Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust. Identities = 306/905 (33%), Positives = 487/905 (53%), Gaps = 63/905 (6%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MMRQY +IK +PD+++ +R+GDFYE F +DA++AS LGITLT+R + + + G P Sbjct: 1 MMRQYFQIKQKHPDAILLFRVGDFYETFSEDAIVASEILGITLTRRANGAAQFVELAGFP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H + Y+ KL++ G R+AIC+Q+E P + K+LV+R + LVTPG T D +LS Sbjct: 61 HHALDTYLPKLVRAGKRVAICDQLEDP-----KKTKTLVKRGITELVTPGVSTNDNVLSH 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHA 207 ++N+L AV+ + + I+ +DISTG F N D + + P+EI+ E S Sbjct: 116 KENNFLAAVSCDKEVFGISLLDISTGEFMAGQGNADYVEKLLTNYRPKEILVERSERSR- 174 Query: 208 EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAAAAAISY 266 + LF G + + F + + R+ ++++ ++ FG + TAA A ++Y Sbjct: 175 -FNDLFHWSGFIFDMEDWAFSSEN-NRLRVLKHFDLKSLKGFGLEELSMAVTAAGAVLNY 232 Query: 267 IKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAG 326 + TQ I R D + +D +LE+L ++ +SLL ID++IT G Sbjct: 233 LDLTQHHQLQHITSLSRLDENRYVRLDKFTVRSLELLSPMNEG-GKSLLDIIDHTITPMG 291 Query: 327 GRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRG 386 R + I PL D +I R + FF ++P I + L D+ R +++ +GR Sbjct: 292 ARRMRQWIVFPLKDPARIQARQRVVEFFFRHPEERAIIAEHLTEIGDLERLVTKGAMGRI 351 Query: 387 EPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTF 446 P+++ +R +++ I + + D E LR KL+ + +K L ++ D Sbjct: 352 SPREMVQLRIALQALEPIKEVCTQAD-EENLRTLGGKLELCKELRDKILREVMPDAPAAL 410 Query: 447 KRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVT 506 R G + G DA+LDE R+L K + LQ + E T I +LK+ +NN GY+IEV Sbjct: 411 GR-GPVIAHGVDATLDELRALAYSGKDYLIKLQQQEIERTGIPSLKVAYNNVFGYYIEVR 469 Query: 507 SSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILS 566 ++ + + +I +QT+ + R+ T EL + E +I A +E + + +L Sbjct: 470 NTHKDKVPAE------WIRKQTLVSAERYITEELKEYEAKILGAEEKIAALEGQLYALLV 523 Query: 567 NAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTL 626 + L SQ +A +D ++ A A+ + P++D S +K GRHP++E+ L Sbjct: 524 AELQRYVAPLQQDSQAVASLDCLLSFAESARRYRFICPVVDESFTIDIKAGRHPVIEQQL 583 Query: 627 KQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPAS 686 + +P+IAND L D + ++ ++TGPNM GKS LRQ ALI +MAQ+GS+VPA Sbjct: 584 P--ADEPYIANDIYL----DTDRQQVIIVTGPNMSGKSALLRQTALISLMAQIGSFVPAE 637 Query: 687 YAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLD 746 A IG+VD +F+RVG++DN++ G STFMVEM E ++ILN T +S V+ DE+GRGT+T D Sbjct: 638 SARIGMVDSIFTRVGASDNISMGESTFMVEMQEASNILNNLTPRSLVLFDELGRGTSTYD 697 Query: 747 GLSIAWATIEYLHETNRC--RGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHK 804 G+SIAW+ +EY+H+ + R L ATH+HEL +L L R HN + + + ++FL K Sbjct: 698 GISIAWSIVEYIHDNPKAHPRTLFATHYHELNELEGQLDRVHNFNVSAREVDGKMLFLRK 757 Query: 805 VIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKN 864 + PG + HS+GIQV +L G+P+ ++ RA DIL E Q+ R+ E +TK++K Sbjct: 758 LEPGGSAHSFGIQVARLGGMPHHIVQRATDILHRLE------QERERIEGEEPKTKDTKR 811 Query: 865 NLSKNDK-------------------------------LFVEKIKCLNLDEMSPLTALKT 893 S+ K E+I LN+D ++PL AL Sbjct: 812 GPSEKVKNASPTLPRDEKGRSIDGYQLSFFQLDDPVLSQIREEILDLNIDNLTPLEALNK 871 Query: 894 LYAVK 898 L +K Sbjct: 872 LNDIK 876 >gi|254804045|ref|YP_003082266.1| DNA mismatch repair protein MutS [Neisseria meningitidis alpha14] gi|254667587|emb|CBA03335.1| DNA mismatch repair protein MutS [Neisseria meningitidis alpha14] Length = 864 Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust. Identities = 305/889 (34%), Positives = 475/889 (53%), Gaps = 54/889 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM+QY+ IK+ + D LVFYRMGDFYE+FFDDA+ A++ L ITLT RG+ G I M G Sbjct: 7 SPMMQQYLGIKAQHTDKLVFYRMGDFYEMFFDDAVEAAKLLDITLTTRGQMDGVPIKMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ +L+K+G +AICEQ+ + K V R VVR+VTPGTLT+ LL Sbjct: 67 VPFHAAEQYLARLVKLGKSVAICEQV-----GEVGAGKGPVERKVVRIVTPGTLTDSALL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 ++N ++AV+ + +AW + +G FK + D+L ++ R+ EI+ + Sbjct: 122 EDKETNRIVAVSPDKKYIGLAWASLQSGEFKTKLTTVDKLDDELARLQAAEILLPDS--- 178 Query: 206 HAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQ---VEKTAAA 261 K+ + V + N + F E + +Y+ + FG + V AA Sbjct: 179 ----KNAPQLQTASGVTRLNAWQFAADAGEKLLTEYFGCQDLRGFGLDGKEHAVAIGAAG 234 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 A ++YI+ TQ + + E + +D+A R NLEI +TLSG + +L+ T+D Sbjct: 235 ALLNYIRLTQNLMPQHLDGLSLETDSQYIGMDAATRRNLEITQTLSGKKSPTLMSTLDLC 294 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G RL A + PL + I R +++ P+Q LKS D+ R +R+ Sbjct: 295 ATHMGSRLLALWLHHPLRNHAHIRARQEAVAALESQ---YEPLQCRLKSIADIERIAARI 351 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL-PQSLE--KTLSSM 438 +G P+D+A +RD + + I +L E + LK + P++L + L Sbjct: 352 AVGNARPRDLAALRDSLFALSEI-------ELSAECSSLLGTLKAVFPENLSTAEQLRQA 404 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + + + +DG + G LDE R +++ + L+ K E T + LK++ N Sbjct: 405 ILPEPSVWLKDGNVINHGFHPELDELRCIQNHGDEFLLDLEAKERERTGLSTLKVEFNRV 464 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 G++IE++ + A D + RQT+ N RF T EL E+++ A AL +E Sbjct: 465 HGFYIELSKTQAEQAPAD------YQRRQTLKNAERFITPELKAFEDKVLTAQEQALALE 518 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F+ + + L A++ A +D+ + LAKE+N+ RP + +++GR Sbjct: 519 KQLFDGVLKNLQTALPQLQKAAKAAAALDVLSTFSALAKERNFVRPEFADYPVIHIENGR 578 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ ++ F AN DL + +L LLTGPNMGGKST++RQ ALIV++A Sbjct: 579 HPVVEQQVRH-----FTANHTDLD-----HKHRLMLLTGPNMGGKSTYMRQVALIVLLAH 628 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 G +VPA A IG +D++F+R+G++D+LAS RSTFMVEM ETA IL+ AT QS V++DE+ Sbjct: 629 TGCFVPADAATIGPIDQIFTRIGASDDLASNRSTFMVEMSETAYILHHATEQSLVLMDEV 688 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGL++A A E+L + N+ L ATH+ ELT L ++ N L + + Sbjct: 689 GRGTSTFDGLALAHAVAEHLLQKNKSFSLFATHYFELTYLPETHAAAVNMHLSALEQGQD 748 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY---- 854 I+FLH++ PG A SYGI V KLAGLP + A L E N+ + ++ Sbjct: 749 IVFLHQIQPGPAGKSYGIAVAKLAGLPVRALKSAQKHLNELEDQAAANRPQLDIFSTMPS 808 Query: 855 -----PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P +++ K + + ++ L+ D ++P AL LY +K Sbjct: 809 EKGDEPNVESFVDKAEEKHFEGILAAALEKLDPDSLTPREALSELYRLK 857 >gi|283470511|emb|CAQ49722.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus ST398] Length = 872 Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust. Identities = 320/914 (35%), Positives = 492/914 (53%), Gaps = 91/914 (9%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPMM+QY++IKS D L+F+R+GDFYE+F++DA ASR L ITLTKR I Sbjct: 1 MSNVTPMMQQYLKIKSEYQDCLLFFRLGDFYEMFYEDAKEASRVLEITLTKRDAKKENPI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A+ YI L+ G+++AICEQ+E P + K +VRR VVR+VTPGT+ E Sbjct: 61 PMCGVPYHSADSYIDTLVNNGYKVAICEQMEDP-----KQTKGMVRREVVRIVTPGTVME 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD-RLISDIMRIDPREIIFS 200 + +NY+++ + E A+++ D+STG K++ N + L+++I I+P E++ + Sbjct: 116 QGGVDDKQNNYILSFVMNQPEIALSYCDVSTGELKVTHFNDEATLLNEITTINPNEVVIN 175 Query: 201 EKELSH--------AEYKSLFETLGN--VAVAQPNVFFDHSI---SESRIADYYNITTVD 247 + H E ++ ETL +V Q +H + + + DY + T Sbjct: 176 DNISDHLKRQINMVTETITVRETLSTEIYSVNQT----EHKLMYQATQLLLDYIHHTQK- 230 Query: 248 TFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS 307 S +E AAI Y+K +D A+ NLE+ ++ Sbjct: 231 --RDLSHIEDVVQYAAIDYMK-----------------------MDFYAKRNLELTESIR 265 Query: 308 -GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK 366 S++ +LL +D + T G R + I PL +I RLD ++ F + I + ++ Sbjct: 266 LKSKKGTLLWLMDETKTPMGARRLKQWIDRPLISKEQIEARLDIVDEFSAHFIERDTLRT 325 Query: 367 ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK 426 L D+ R + R+ G +D+ ++ I NI L N + ++ V +L+ Sbjct: 326 YLNQVYDIERLVGRVSYGNVNARDLIQLKHSISEIPNIKALL--NSMNQDTLVQVNQLEP 383 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 L L+ L L ++ P +DGG + G + LDE K +A LQ K + T Sbjct: 384 LDDLLD-ILEQSLVEEPPISVKDGGLFKVGFNMQLDEYLEASKNGKTWLAELQAKERQRT 442 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 IK+LKI N GYFIE+T ++ L+ S+ ++ +QT+SN RF T EL + E+ Sbjct: 443 GIKSLKISFNKVFGYFIEITRAN---LQNFEPSEFGYMRKQTLSNAERFITDELKEKEDI 499 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 I A + A+ +E + F L + + +E L +++I+ +D + A +A++ NY RP Sbjct: 500 ILGAEDKAIELEYQLFVQLREEVKKYTERLQQQAKIISELDCLQSFAEIAQKYNYTRPSF 559 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 + + + RHP+VE+ + ++ N+C L N ++L+TGPNM GKST+ Sbjct: 560 SENKTLELVESRHPVVERVM---DYNDYVPNNCRLD-----NETFIYLITGPNMSGKSTY 611 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ A+I IMAQMG+YVP A + I D++F+R+G+AD+L SG+STFMVEM+E L Sbjct: 612 MRQVAIISIMAQMGAYVPCKEAVLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTY 671 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT S +I DEIGRGT+T DGL++A A IEY+ ET+ + L +TH+HELT L ++L Sbjct: 672 ATEDSLIIFDEIGRGTSTYDGLALAQAMIEYVAETSHAKTLFSTHYHELTTLDQALPSLK 731 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE------ 840 N + ++ +IFLHKV G D SYGIQV KLA LP VISRA IL FE Sbjct: 732 NVHVAANEYKGELIFLHKVKDGAVDDSYGIQVAKLADLPEKVISRAQVILSEFEASAGKK 791 Query: 841 ------KLYHHNQKDMRLYYPEIQTKESKNNLSKND------KLF-------VE-KIKCL 880 K+ N+ ++ + +E+ + LS+ D LF +E +IK L Sbjct: 792 SSISNLKMV-ENEPEINQENSNLSVEETTDTLSQKDFEQASFDLFENDQESEIELQIKNL 850 Query: 881 NLDEMSPLTALKTL 894 NL M+P+ AL L Sbjct: 851 NLSNMTPIEALVKL 864 >gi|295676882|ref|YP_003605406.1| DNA mismatch repair protein MutS [Burkholderia sp. CCGE1002] gi|295436725|gb|ADG15895.1| DNA mismatch repair protein MutS [Burkholderia sp. CCGE1002] Length = 895 Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust. Identities = 305/897 (34%), Positives = 467/897 (52%), Gaps = 46/897 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 ++ TPMM+QY+ IK+ +P +LVFYRMGDFYELFFDDA A+R L +TLT+RG G Sbjct: 10 DVAQHTPMMQQYLRIKAEHPGTLVFYRMGDFYELFFDDAEKAARLLDLTLTQRGASAGNP 69 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 I M GVP H+ Y+ KL+K+G +AICEQI P +K V R V+R+VTPGTLT Sbjct: 70 IKMAGVPHHSVEQYLAKLVKLGESVAICEQIGDPAT-----SKGPVERKVMRVVTPGTLT 124 Query: 141 EDQLLSPTDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDP 194 + LLS YL+A+ + T +AW+++++G +++ D++ + + RI P Sbjct: 125 DAALLSDKSDVYLLALCVAHNRRGVATSVGLAWLNLASGALRLAEVAPDQVAAALERIRP 184 Query: 195 REIIFSEKELSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFGSFS 253 EI+ ++ + A+ S + A+ + P FD + R+ D + ++D FG+ S Sbjct: 185 AEILIAD---ATADSTSWTPPVSASALKRVPAWHFDVTSGAKRLCDQLEVASLDGFGAHS 241 Query: 254 -QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 AA A + Y TQ + + E + +D A R NLE+ TL G+ Sbjct: 242 LGCACGAAGALLLYAASTQGQQLRHVRSLKVESESEYIGLDPATRRNLELTETLRGTESP 301 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP--ILINPIQKILKS 370 +L +D T G RL + P DS R +I + P ++ ++ L+ Sbjct: 302 TLCSLLDTCCTTMGSRLLRHWLHHPPRDSAVAQARQQAIGALLDAPPGTDLDTLRSALRQ 361 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS 430 D+ R RL + P+D++ +RD + + + ++ + P Sbjct: 362 ISDIERITGRLALLSARPRDLSSLRDTFIALPALRAQLAAVAANADSLARIDAALEPPHE 421 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L ++ + RDGG + G DA LDE R + + + + L+ + T I N Sbjct: 422 CVDLLKLAVAQEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLETRERARTGINN 481 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 L++++N G++IEVT + D + RQT+ N R+ T EL E++ +A Sbjct: 482 LRVEYNKVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTFEDKALSA 535 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 AL E ++ L A++ + +A +D+ A A+ ++ P + Sbjct: 536 QERALARERALYDALLQALLPFIPDCQRVALALAELDLLAAFGERARALDWVAPTFSANA 595 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 ++ GRHP+VE ++Q FIANDC L+ KL L+TGPNMGGKSTF+RQ Sbjct: 596 GIDIEQGRHPVVEAQVEQ-----FIANDCTLA-----TERKLLLITGPNMGGKSTFMRQT 645 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI ++A +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+ILN AT Q Sbjct: 646 ALIALLAYVGSYVPARRAAFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILNDATPQ 705 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V++DEIGRGT+T DGL++AWA +L N C L ATH+ ELT L N L Sbjct: 706 SLVLMDEIGRGTSTFDGLALAWAIARHLLAHNGCYTLFATHYFELTQLPGEFPHAANVHL 765 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN---Q 847 + GI+FLH V G A+ SYG+QV +LAG+PN VI A L E+ Q Sbjct: 766 SAVEHGHGIVFLHAVNEGPANQSYGLQVAQLAGVPNAVIRAARKHLAHLEQQSAAQPAPQ 825 Query: 848 KDMRLYYPEIQTKESKNN---------LSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 D+ P + +++ ++ S + VE+++ ++ +++ P AL LY Sbjct: 826 LDLFATQPAMLAEDADDDHESASNATPASPAMQTLVERLRGIDPNDLRPREALDLLY 882 >gi|328950999|ref|YP_004368334.1| DNA mismatch repair protein mutS [Marinithermus hydrothermalis DSM 14884] gi|328451323|gb|AEB12224.1| DNA mismatch repair protein mutS [Marinithermus hydrothermalis DSM 14884] Length = 846 Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust. Identities = 301/879 (34%), Positives = 476/879 (54%), Gaps = 67/879 (7%) Query: 27 PMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI--PMC 84 P+++QY+E++ P+ L+ +++GDFYE F +DA +R LG+ LT + KD PM Sbjct: 17 PLLQQYVELRDQYPEYLLLFQVGDFYECFGEDAERLARALGLVLTHKTS---KDFTTPMA 73 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G+PV +A+ YI++L+ G R+A+ +Q+E P A+ LVRR V +L+TPGT+TE+ L Sbjct: 74 GIPVRSADTYIERLLAQGVRVALADQVEDPQAAE-----GLVRREVTQLITPGTVTEENL 128 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREIIFSEK 202 L P D+NYL A+A + +A ID+STG F+ T + R L +++R P E++ + + Sbjct: 129 LRP-DANYLAALA-TGDGYGLALIDVSTGEFR-GTHLYSRTALYDELVRYRPAEVLLAPE 185 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITT--VDTFGSFSQVEKTAA 260 H E+ V +AQ FD + + ++ + VDT AA Sbjct: 186 LYEHPEFGEELRRRFPVMLAQAR--FDVEEARRTLTAHFGVPPQGVDTPALLR-----AA 238 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT-LSGSREQSLLKTID 319 A ++Y +TQ + R D + + +D A + LE+ G E++L ++ Sbjct: 239 GAVLAYALETQQGRLAQVTRFLRYDPGAYMQLDGVALATLEVFEAQFGGGEERTLFGVLN 298 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL E + PL D I RL+++ F+++ +L +++ L D+ R Sbjct: 299 QTRTAPGRRLLREWLRHPLLDRNLIEARLEAVEAFVRDAVLRRAVRRALYKVHDLERLAG 358 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 RL R +D+A + +R + L L+ + L E+L + + E+ + + L Sbjct: 359 RLASHRASARDLAALARSLRL-VPALRAELEGCEEDALLALAERLDGMAEVRER-IEAAL 416 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 +D P +GG ++DG DA LD R + + IA+L+ K E T I LK+ N Sbjct: 417 VEDPPQKLTEGGLIKDGYDAELDRLRGAAEAGRAWIAALEAKERERTGIPTLKVGFNGVF 476 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY++EVT + + +D + QT+ + R+T +L + E I A +A E Sbjct: 477 GYYLEVTRPYYAQVPEDYRAV------QTLKDRQRYTRPDLREKEREILRAEEAARKREY 530 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 F L A++ +E + + + +A +D+ ALA +A + NY RP F V+ GRH Sbjct: 531 AVFSELREALVPYAERVRDLAAALAELDVYAALAEVAAQYNYTRPRFSEDGVFRVRQGRH 590 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 +VE+ FI ND +LS P + L +LTGPNM GKST+LRQNALIV++AQ+ Sbjct: 591 AVVER------HGAFIPNDLELS-PQQR----LVILTGPNMSGKSTYLRQNALIVLLAQI 639 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPA A + +VD++++R+G+AD++A GRSTFMVEM E A IL AT +S V+LDE+G Sbjct: 640 GSFVPAEEAVLPVVDRIYTRIGAADDIAGGRSTFMVEMEELARILQGATERSLVLLDEVG 699 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGT+T DGLS+AWA EYLH+T R L ATH+ ELT L + L N + + G+ Sbjct: 700 RGTSTYDGLSLAWAAAEYLHDTVRAYTLFATHYFELTALPQRLPAARNFHVAAKEEAGGL 759 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 +F H+V+PG A SYG++V +LAG+P V++RA +L Sbjct: 760 VFYHQVLPGPASKSYGLEVARLAGVPPEVVTRAQQLLAGL-------------------- 799 Query: 860 KESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E++ + + VE + ++L +SPL AL L+ ++ Sbjct: 800 -EARGGDAAAE--VVEALLSVDLSRLSPLEALMLLHRIQ 835 >gi|325143395|gb|EGC65724.1| DNA mismatch repair protein MutS [Neisseria meningitidis 961-5945] gi|325199234|gb|ADY94690.1| DNA mismatch repair protein MutS [Neisseria meningitidis G2136] Length = 864 Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust. Identities = 304/889 (34%), Positives = 475/889 (53%), Gaps = 54/889 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM+QY+ IK+ + D LVFYRMGDFYE+FFDDA+ A++ L ITLT RG+ G+ + M G Sbjct: 7 SPMMQQYLGIKAQHTDKLVFYRMGDFYEMFFDDAVEAAKLLDITLTTRGQMDGEPVKMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ +L+K+G +AICEQ+ + K V R VVR+VTPGTLT+ LL Sbjct: 67 VPFHAAEQYLARLVKLGKSVAICEQV-----GEVGAGKGPVERKVVRIVTPGTLTDSALL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 ++N ++AV+ + +AW + +G FK + D+L ++ R+ EI+ + Sbjct: 122 EDKETNRIVAVSPDKKYIGLAWASLQSGEFKTKLTTVDKLDDELARLQAAEILLPDS--- 178 Query: 206 HAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQ---VEKTAAA 261 K+ + V + N + F E + +Y+ + FG + V AA Sbjct: 179 ----KNAPQLQTASGVTRLNAWQFAADAGEKLLTEYFGCQDLRGFGLDGKEHAVAIGAAG 234 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 A ++YI+ TQ + + E + +D+A R NLEI +TLSG + +L+ T+D Sbjct: 235 ALLNYIRLTQNLMPQHLDGLSLETDSQYIGMDAATRRNLEITQTLSGKKSPTLMSTLDLC 294 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G RL A + PL + I R +++ P+Q LKS D+ R +R+ Sbjct: 295 ATHMGSRLLALWLHHPLRNRAHIRARQEAVAALESQ---YKPLQCRLKSIADIERIAARI 351 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL-PQSLE--KTLSSM 438 +G P+D+A +RD + + I +L E + LK + P++L + L Sbjct: 352 AVGNARPRDLAALRDSLFALSEI-------ELSAECSSLLGTLKAVFPENLSTAEQLRQA 404 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + + + +DG + G LDE R +++ + L+ K E T + LK++ N Sbjct: 405 ILPEPSVWLKDGNVINHGFHPELDELRRIQNHGDEFLLDLEAKERERTGLSTLKVEFNRV 464 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 G++IE++ + A D + RQT+ N RF T EL E+++ A AL +E Sbjct: 465 HGFYIELSKTQAEQAPAD------YQRRQTLKNAERFITPELKAFEDKVLTAQEQALALE 518 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F+ + + L A++ A +D+ + LAKE+N+ RP + +++GR Sbjct: 519 KQLFDGVLKNLQTALPQLQKAAKAAAALDVLSTFSALAKERNFVRPEFADYPVIHIENGR 578 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ ++ F AN DL + +L LLTGPNMGGKST++RQ ALIV++A Sbjct: 579 HPVVEQQVRH-----FTANHTDLD-----HKHRLMLLTGPNMGGKSTYMRQVALIVLLAH 628 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 G +VPA A IG +D++F+R+G++D+LAS RSTFMVEM ETA IL+ AT QS V++DE+ Sbjct: 629 TGCFVPADAATIGPIDQIFTRIGASDDLASNRSTFMVEMSETAYILHHATEQSLVLMDEV 688 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGL++A A E+L + N+ L ATH+ ELT L ++ N L + + Sbjct: 689 GRGTSTFDGLALAHAVAEHLLQKNKSFSLFATHYFELTYLPEAHAAAVNMHLSALEQGQD 748 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY---- 854 I+FLH++ PG A SYGI V KLAGLP + A L E N+ + ++ Sbjct: 749 IVFLHQIQPGPAGKSYGIAVAKLAGLPVRALKSAQKHLNGLENQAAANRPQLDIFSTMPS 808 Query: 855 -----PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P + + K + + ++ L+ D ++P AL LY +K Sbjct: 809 EKGDEPNVDSFVDKAEEKHFEGILAAALEKLDPDSLTPREALSELYRLK 857 >gi|283770359|ref|ZP_06343251.1| DNA mismatch repair protein mutS [Staphylococcus aureus subsp. aureus H19] gi|283460506|gb|EFC07596.1| DNA mismatch repair protein mutS [Staphylococcus aureus subsp. aureus H19] Length = 872 Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust. Identities = 320/914 (35%), Positives = 492/914 (53%), Gaps = 91/914 (9%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPMM+QY++IKS D L+F+R+GDFYE+F++DA ASR L ITLTKR I Sbjct: 1 MSNVTPMMQQYLKIKSEYQDCLLFFRLGDFYEMFYEDAKEASRVLEITLTKRDAKKENPI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A+ YI L+ G+++AICEQ+E P + K +VRR VVR+VTPGT+ E Sbjct: 61 PMCGVPYHSADSYIDTLVNNGYKVAICEQMEDP-----KQTKGMVRREVVRIVTPGTVME 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD-RLISDIMRIDPREIIFS 200 + +NY+++ + E A+++ D+STG K++ N + L+++I I+P E++ + Sbjct: 116 QGGVDDKQNNYILSFVMNQPEIALSYCDVSTGELKVTHFNDEATLLNEITTINPNEVVIN 175 Query: 201 EKELSH--------AEYKSLFETLGN--VAVAQPNVFFDHSI---SESRIADYYNITTVD 247 + H E ++ ETL + +V Q +H + + + DY + T Sbjct: 176 DNISDHLKRQINMVTETITVRETLSSEIYSVNQT----EHKLMYQATQLLLDYIHHTQK- 230 Query: 248 TFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS 307 S +E AAI Y+K +D A+ NLE+ ++ Sbjct: 231 --RDLSHIEDVVQYAAIDYMK-----------------------MDFYAKRNLELTESIR 265 Query: 308 -GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK 366 S++ +LL +D + T G R + I PL +I RLD ++ F + I + ++ Sbjct: 266 LKSKKGTLLWLMDETKTPMGARRLKQWIDRPLISKEQIEARLDIVDEFSAHFIERDTLRT 325 Query: 367 ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK 426 L D+ R + R+ G +D+ ++ I NI L N + ++ V +L+ Sbjct: 326 YLNQVYDIERLVGRVSYGNVNARDLIQLKHSISEIPNIKALL--NSMNQDTLVQVNQLEP 383 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 L L+ L L ++ P +DGG + G + LDE K +A LQ K + T Sbjct: 384 LDDLLD-ILEQSLVEEPPISVKDGGLFKVGFNMQLDEYLEASKNGKTWLAELQAKERQRT 442 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 IK+LKI N GYFIE+T ++ L+ S+ ++ +QT+SN RF T EL + E+ Sbjct: 443 GIKSLKISFNKVFGYFIEITRAN---LQNFEPSEFGYMRKQTLSNAERFITDELKEKEDI 499 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 I A + A+ +E + F L + + +E L +++I+ +D + A +A++ NY RP Sbjct: 500 ILGAEDKAIELEYQLFVQLREEVKKYTERLQQQAKIISELDCLQSFAEIAQKYNYTRPSF 559 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 + + + RHP+VE+ + ++ N+C L N ++L+TGPNM GKST+ Sbjct: 560 SENKTLELVESRHPVVERVM---DYNDYVPNNCRLD-----NETFIYLITGPNMSGKSTY 611 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ A+I IMAQMG+YVP A + I D++F+R+G+AD+L SG+STFMVEM+E L Sbjct: 612 MRQVAIISIMAQMGAYVPCKEAVLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTY 671 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT S +I DEIGRGT+T DGL++A A EY+ ET+ + L +TH+HELT L ++L Sbjct: 672 ATEDSLIIFDEIGRGTSTYDGLALAQAMTEYVAETSHAKTLFSTHYHELTTLDQALPSLK 731 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE------ 840 N + ++ +IFLHKV G D SYGIQV KLA LP VISRA IL FE Sbjct: 732 NVHVAANEYKGELIFLHKVKDGAVDDSYGIQVAKLADLPEKVISRAQVILSEFEASADKK 791 Query: 841 ------KLYHHNQKDMRLYYPEIQTKESKNNLSKND------KLF-------VE-KIKCL 880 K+ N+ ++ + KE+ + LS+ D LF +E +IK L Sbjct: 792 SSISNLKMV-ENEPEINQENSNLSVKETTDTLSQKDFEQASFDLFENDQESEIELQIKNL 850 Query: 881 NLDEMSPLTALKTL 894 NL M+P+ AL L Sbjct: 851 NLSNMTPIEALVKL 864 >gi|221065793|ref|ZP_03541898.1| DNA mismatch repair protein MutS [Comamonas testosteroni KF-1] gi|220710816|gb|EED66184.1| DNA mismatch repair protein MutS [Comamonas testosteroni KF-1] Length = 888 Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust. Identities = 309/908 (34%), Positives = 480/908 (52%), Gaps = 42/908 (4%) Query: 3 KEFSSPQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLA 62 K SP YS + +L + TPMM+QY ++K+ PD+LVFYRMGDFYELFF DA Sbjct: 4 KSTESPSLPYSPDM---ADLSAHTPMMQQYFKLKADYPDTLVFYRMGDFYELFFGDAEKV 60 Query: 63 SRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGN 122 +R L ITLT RG+ G+ IPM GVP H +Y+ +LIK+G +AICEQ+ + Sbjct: 61 TRLLDITLTSRGQTAGQPIPMAGVPFHALENYLGRLIKMGESVAICEQV-----GEIGAG 115 Query: 123 KSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARI-RTEWAIAWIDISTGIFKISTSN 181 K V R VVR+VTPGTLT+ +LLS L+AV R +AW+ ++ G ++ Sbjct: 116 KGPVERKVVRVVTPGTLTDSELLSDKSEAILVAVHTAGRQRCGLAWMAVTQGRIHMAECA 175 Query: 182 HDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA-----QPNVFFDHSISESR 236 D L + + RI P E+I+S E ++LF + A++ +P+ FD + E + Sbjct: 176 ADELGAWLSRIAPSEVIYSAGVTERFE-QALFAVKHSSAISCPLSPRPDWQFDSGLGERK 234 Query: 237 IADYYNITTVDTFGSFS-QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSA 295 + + ++ + + + A+AA +SY + TQ N I + + + + A Sbjct: 235 LLELLGAASLKAWEAEGLPLAHGASAALLSYAEHTQGRNLTHIHAIQVQSDDELIALPLA 294 Query: 296 ARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFI 355 R NLE+++TL G +L +D +TG G RL + P + RL++I Sbjct: 295 TRRNLELVKTLRGEDSPTLFSLLDSCMTGMGSRLLKTWLLEPERNRQSAMQRLEAIGVLR 354 Query: 356 QNPILINPIQKI---LKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN- 411 + P Q + LK DV R +R+ + + P+++ G+ + L ++ Sbjct: 355 GTGAGMAPWQALRAELKGVSDVERITARIALRQVRPRELV----GLSKTLEKAKLLAQSG 410 Query: 412 DLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQS 471 P + P+ + L+ + ++ RDGG + G DA LDE R++++ Sbjct: 411 QAPSAYLTQIFNDLIPPEGCAELLARAILEEPAALVRDGGVIATGFDAELDELRAIQNNC 470 Query: 472 KRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSN 531 + L+ K T I NL+++ N G++IEVT+S + +RF RQT+ N Sbjct: 471 DEFLLELEAKEKLLTGIPNLRVQFNKVHGFYIEVTNSYKDAVP------ERFRRRQTLKN 524 Query: 532 LTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIA 591 R+ T EL E++ +A AL E FE L + + L +Q IA +D+ Sbjct: 525 AERYITPELKAFEDKALSAQERALQREKFLFEQLLDQLQPHVPQLTRVAQAIAALDVLCT 584 Query: 592 LAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGK 651 LA + N+ P + ++ GRHP+VE + + SS FIAN ++ + + Sbjct: 585 LAERSLTLNWAEPQFVSQPCIEIEAGRHPVVEARMAETSSGSFIANHTRMNL-----NTR 639 Query: 652 LWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRS 711 + ++TGPNMGGKST++RQ ALIV++A MGSYVPA +G +D + +R+G+AD+LA+ +S Sbjct: 640 MQIITGPNMGGKSTYMRQVALIVLLASMGSYVPAGACRLGPIDAIHTRIGAADDLANAQS 699 Query: 712 TFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATH 771 TFM+EM E A IL+ AT S V++DEIGRGT+T DGL++A LH+ + L ATH Sbjct: 700 TFMMEMTEAAQILHSATPHSLVLMDEIGRGTSTFDGLALASGIASQLHDKTKAFTLFATH 759 Query: 772 FHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISR 831 + ELT+L K N + ++S I+FLH++ G A SYGIQV KLAG+P V++ Sbjct: 760 YFELTELPAKAKAAVNVHVSAAESGSDIVFLHEIQAGPASRSYGIQVAKLAGMPAGVLNH 819 Query: 832 AYDILKTFEKLYHHNQKDMRLY-YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTA 890 A L+ E N+ + L+ PE+ ++ LS D+ + +N D +SP A Sbjct: 820 ARHALEALESQAGENELQVNLFDAPEL--VDASAALSPLDQAMAD----VNPDALSPREA 873 Query: 891 LKTLYAVK 898 L+ LY +K Sbjct: 874 LEVLYQLK 881 >gi|212702797|ref|ZP_03310925.1| hypothetical protein DESPIG_00827 [Desulfovibrio piger ATCC 29098] gi|212673659|gb|EEB34142.1| hypothetical protein DESPIG_00827 [Desulfovibrio piger ATCC 29098] Length = 906 Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust. Identities = 322/931 (34%), Positives = 487/931 (52%), Gaps = 67/931 (7%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 + E TPM QY+ IK+ PD+L+FYRMGDFYELFFDDA+ A+R L I LT R + Sbjct: 1 MAEKTPKLTPMFEQYLRIKADYPDALLFYRMGDFYELFFDDAVTAARELQIALTSRSRDT 60 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 +PMCGVP H A YI +LI G +AIC+Q E P + K LV+R V +VTPG Sbjct: 61 ENPVPMCGVPWHAAQAYIAQLIDKGFHVAICDQTEDP-----KAAKGLVQRAVTCVVTPG 115 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFK-ISTSNHDRLISDIMRIDPRE 196 T+ ED L NYL A A W DISTG + + L I ++ PRE Sbjct: 116 TVLEDANLDARSHNYLGAAFWEGHNGAFVWADISTGQWSGMEVKRLPELWQWIQKLAPRE 175 Query: 197 IIFSE-KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ- 254 ++ + KEL K L E G + +P FD +E R+ + ++ + G ++ Sbjct: 176 LLVPDDKELPP---KCLLE--GVRLLRRPVAGFDARKAERRLLEAQSVQELAALGLQNKP 230 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYP-EREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 A A + Y+++TQ +P P + D+ + +D NLEI + L+G + + Sbjct: 231 CLVRACGALLVYLEQTQK-RRPEHLMPFQPLDLGRHMLVDDVTERNLEIFQRLNGRKGKG 289 Query: 314 LLK-TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 L+ +D ++T GGRL + + P ++ I D++ + +++ LK Sbjct: 290 TLRHVLDDTMTPMGGRLLEDMLRHPWREAAPILAVQDAVALLHDDDNRRALLREALKDVY 349 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILN-----LFLKNDLPEELRG-----AVE 422 D+ R +R+ + R P+D + + + + +L L K LP + G + Sbjct: 350 DLERLSTRVTVNRATPRDFIALGNSLAALPAVLAALTQPLDGKYPLPGQENGEDAPRVIH 409 Query: 423 KLKKLPQSLEKT---LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQ 479 +L K L L S L D P DGG + G +A LD L + ++ + Sbjct: 410 ELLKGWDDLADCAHLLRSALVDSPPVVITDGGLFKAGYNAELDRLLDLVEHGEQKLQEEL 469 Query: 480 LKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLE 539 + +ET I LK+ N GY+ E++ ++ S + FI RQT++N RFTT Sbjct: 470 AREQQETGIAKLKLGFNRVFGYYYELSKAAHSG-----PVPEHFIRRQTLANAERFTTPA 524 Query: 540 LIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQ 599 L +LE + +A+ +E + ++ L + +Q E + + + VIA +D +LA + + Sbjct: 525 LKELEEALLSASEKRKTLEYQLYQDLRTFMAQQRERILHMADVIAHLDYWQSLAEVGRRN 584 Query: 600 NYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPN 659 +CRP +D S + ++++GRHP+VE + + F+ N+ L +L LLTGPN Sbjct: 585 GWCRPELDGSADILIEEGRHPVVEAMI---GTANFVPNNITLDAKR-----RLCLLTGPN 636 Query: 660 MGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIE 719 M GKST LRQ A+I ++AQ GS VPA+ A +G+VD+LFSRVG++DNLA G+STFMVEM+E Sbjct: 637 MAGKSTVLRQVAIICLLAQTGSMVPATRARLGLVDRLFSRVGASDNLAQGQSTFMVEMME 696 Query: 720 TASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYL--HETNRCRGLLATHFHELTD 777 TA IL QAT +S VILDEIGRGT+T DG+++AWA +E L R L ATH+HELT Sbjct: 697 TARILRQATKRSLVILDEIGRGTSTYDGVALAWAVVEDLAARAHGEVRTLFATHYHELTA 756 Query: 778 LSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILK 837 L K + + + + I+FLHK++PG AD SYG++V +LAG+P V+ RA IL Sbjct: 757 LEKRVPGVFTMNIAIREYGGDILFLHKLVPGPADRSYGVEVARLAGVPAPVVQRARAILA 816 Query: 838 TFEKLYHHNQKDMRLYYPEIQT-----------KESKNNLS--------KNDKLFVEKIK 878 E+ ++ + R P+ +T +E +L V ++ Sbjct: 817 ELEQ----SRGEGRRMSPQTETLALPGMEKRVAREEPPSLPIDIPAAPAAGPHPLVLLLR 872 Query: 879 CLNLDEMSPLTALKTLYAVKAWTLEKYSTDE 909 L+ DE+SPL ALK + K + T+E Sbjct: 873 DLDPDELSPLAALKLIMEWKKLWADAPDTEE 903 >gi|49483458|ref|YP_040682.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus MRSA252] gi|257425349|ref|ZP_05601774.1| DNA mismatch repair protein mutS [Staphylococcus aureus subsp. aureus 55/2053] gi|257428010|ref|ZP_05604408.1| DNA mismatch repair protein mutS [Staphylococcus aureus subsp. aureus 65-1322] gi|257430643|ref|ZP_05607025.1| DNA mismatch repair protein mutS [Staphylococcus aureus subsp. aureus 68-397] gi|257433403|ref|ZP_05609761.1| DNA mismatch repair protein mutS [Staphylococcus aureus subsp. aureus E1410] gi|257436245|ref|ZP_05612292.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus M876] gi|282903850|ref|ZP_06311738.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus C160] gi|282905613|ref|ZP_06313468.1| DNA mismatch repair protein mutS [Staphylococcus aureus subsp. aureus Btn1260] gi|282908589|ref|ZP_06316419.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910867|ref|ZP_06318670.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus WBG10049] gi|282914072|ref|ZP_06321859.1| DNA mismatch repair protein HexA [Staphylococcus aureus subsp. aureus M899] gi|282918994|ref|ZP_06326729.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus C427] gi|282924117|ref|ZP_06331793.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus C101] gi|283958038|ref|ZP_06375489.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus A017934/97] gi|293501104|ref|ZP_06666955.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus 58-424] gi|293510066|ref|ZP_06668774.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus M809] gi|293526652|ref|ZP_06671337.1| DNA mismatch repair protein HexA [Staphylococcus aureus subsp. aureus M1015] gi|295427782|ref|ZP_06820414.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591260|ref|ZP_06949898.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus MN8] gi|56749234|sp|Q6GHE0|MUTS_STAAR RecName: Full=DNA mismatch repair protein mutS gi|49241587|emb|CAG40273.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus MRSA252] gi|172087856|emb|CAQ35084.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus] gi|172087858|emb|CAQ35085.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus] gi|172087878|emb|CAQ35095.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus] gi|172087882|emb|CAQ35097.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus] gi|257271806|gb|EEV03944.1| DNA mismatch repair protein mutS [Staphylococcus aureus subsp. aureus 55/2053] gi|257274851|gb|EEV06338.1| DNA mismatch repair protein mutS [Staphylococcus aureus subsp. aureus 65-1322] gi|257278771|gb|EEV09390.1| DNA mismatch repair protein mutS [Staphylococcus aureus subsp. aureus 68-397] gi|257281496|gb|EEV11633.1| DNA mismatch repair protein mutS [Staphylococcus aureus subsp. aureus E1410] gi|257284527|gb|EEV14647.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus M876] gi|282314089|gb|EFB44481.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus C101] gi|282316804|gb|EFB47178.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus C427] gi|282322140|gb|EFB52464.1| DNA mismatch repair protein HexA [Staphylococcus aureus subsp. aureus M899] gi|282325472|gb|EFB55781.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus WBG10049] gi|282327651|gb|EFB57934.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330905|gb|EFB60419.1| DNA mismatch repair protein mutS [Staphylococcus aureus subsp. aureus Btn1260] gi|282595468|gb|EFC00432.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus C160] gi|283790187|gb|EFC29004.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus A017934/97] gi|290920724|gb|EFD97787.1| DNA mismatch repair protein HexA [Staphylococcus aureus subsp. aureus M1015] gi|291096109|gb|EFE26370.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus 58-424] gi|291467010|gb|EFF09528.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus M809] gi|295128140|gb|EFG57774.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576146|gb|EFH94862.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus MN8] gi|312438324|gb|ADQ77395.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus TCH60] gi|315194182|gb|EFU24575.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus CGS00] Length = 872 Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust. Identities = 320/914 (35%), Positives = 494/914 (54%), Gaps = 91/914 (9%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPMM+QY++IKS D L+F+R+GDFYE+F++DA ASR L ITLTKR I Sbjct: 1 MSNVTPMMQQYLKIKSEYQDCLLFFRLGDFYEMFYEDAKEASRVLEITLTKRDAKKENPI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A+ YI L+ G+++AICEQ+E P + K +VRR VVR+VTPGT+ E Sbjct: 61 PMCGVPYHSADSYIDTLVNNGYKVAICEQMEDP-----KQTKGMVRREVVRIVTPGTVME 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD-RLISDIMRIDPREIIFS 200 + +NY+++ + E A+++ D+STG K++ N + L+++I I+P E++ + Sbjct: 116 QGGVDDKQNNYILSFVMNQPEIALSYCDVSTGELKVTHFNDEATLLNEITTINPNEVVIN 175 Query: 201 EKELSH--------AEYKSLFETLGN--VAVAQPNVFFDHSI---SESRIADYYNITTVD 247 + H E ++ ETL + +V Q +H + + + DY + T Sbjct: 176 DNISDHLKRQINMVTETITVRETLSSEIYSVNQT----EHKLMYQATQLLLDYIHHTQK- 230 Query: 248 TFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS 307 S +E AAI Y+K +D A+ NLE+ ++ Sbjct: 231 --RDLSHIEDAVQYAAIDYMK-----------------------MDFYAKRNLELTESIR 265 Query: 308 -GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK 366 S++ +LL +D + T G R + I PL +I RLD ++ F + I + ++ Sbjct: 266 LKSKKGTLLWLMDETKTPMGARRLKQWIDRPLISKEQIEARLDIVDEFSAHFIERDTLRT 325 Query: 367 ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK 426 L D+ R + R+ G +D+ ++ I NI L N + ++ V +L+ Sbjct: 326 YLNQVYDIERLVGRVSYGNVNARDLIQLKHSISEIPNIKALL--NSMNQDTLVQVNQLEP 383 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 L L+ L L ++ P +DGG + G + LDE K +A LQ K + T Sbjct: 384 LDDLLD-ILEQSLVEEPPISVKDGGLFKVGFNMQLDEYLEASKNGKTWLAELQAKERQRT 442 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 IK+LKI N GYFIE+T ++ L+ S+ ++ +QT+SN RF T EL + E+ Sbjct: 443 GIKSLKISFNKVFGYFIEITRAN---LQNFEPSEFGYMRKQTLSNAERFITDELKEKEDI 499 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 I A + A+ +E + F L + + +E L + +++I+ +D + A +A++ NY RP Sbjct: 500 ILGAEDKAIELEYQLFVQLREEVKKYTERLQHQAKIISELDCLQSFAEIAQKYNYTRPSF 559 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 + + + RHP+VE+ + ++ N+C L N ++L+TGPNM GKST+ Sbjct: 560 SENKTLELVESRHPVVERVM---DYNDYVPNNCRLD-----NETFIYLITGPNMSGKSTY 611 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ A+I IMAQMG+YVP A + I D++F+R+G+AD+L SG+STFMVEM+E L Sbjct: 612 MRQVAIISIMAQMGAYVPCKEAVLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTY 671 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT S +I DEIGRGT+T DGL++A A IEY+ ET+ + L +TH+HELT L ++L Sbjct: 672 ATEDSLIIFDEIGRGTSTYDGLALAQAMIEYVAETSHAKTLFSTHYHELTTLDQALPSLK 731 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE------ 840 N + ++ +IFLHKV G D SYGIQV KLA LP VISRA IL FE Sbjct: 732 NVHVAANEYKGELIFLHKVKDGAVDDSYGIQVAKLADLPEKVISRAQVILSEFEASAGKK 791 Query: 841 ------KLYHHNQKDMRLYYPEIQTKESKNNLSKND------KLF-------VE-KIKCL 880 K+ N+ ++ + +E+ + LS+ D LF +E +IK L Sbjct: 792 SSISNLKMV-ENEPEINQENSNLSVEETTDTLSQKDFEQASFDLFENDQESEIELQIKNL 850 Query: 881 NLDEMSPLTALKTL 894 NL M+P+ AL L Sbjct: 851 NLSNMTPIEALVKL 864 >gi|295425864|ref|ZP_06818544.1| DNA mismatch repair protein MutS [Lactobacillus amylolyticus DSM 11664] gi|295064467|gb|EFG55395.1| DNA mismatch repair protein MutS [Lactobacillus amylolyticus DSM 11664] Length = 865 Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust. Identities = 280/820 (34%), Positives = 460/820 (56%), Gaps = 36/820 (4%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S+TPMM QY +IK PD+ +FYR+GDFYELF DDA+ ++ L +TLT R IPM Sbjct: 5 STTPMMEQYYDIKKQYPDAFLFYRVGDFYELFEDDAVKGAQILELTLTHRSNKTKNPIPM 64 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP + Y+ L++ G+++A+CEQ+E P +AK +V+R +++LVTPGT+ + Sbjct: 65 AGVPHLAVDSYVNTLVEKGYKVALCEQLEDPKKAK-----GMVKRGIIQLVTPGTMMAEG 119 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEK 202 +SNYL +V + + +A+ D+STG I+ + + ++++ + RE++++ Sbjct: 120 PNEAKESNYLTSVVTTNSGFGLAYSDLSTGEIYTTHLKDFAAVSNELLSLRTREVVYNGP 179 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 + + F N+ V++P ++ I+ V+ + E+ AA Sbjct: 180 LTAQNQD---FMHKANITVSKPTPLE---------GEHAEISYVEQ-NLKNHAERQAAEQ 226 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYS 321 + Y+ TQ + + + ++ L + ++NLE++ + +G + SL +D + Sbjct: 227 LVGYLLTTQKRSLAHLQIAKSYEVNQYLQMSHTVQNNLELISSAKTGKKMGSLFWVLDKT 286 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T GGRL ++ PL +IN R + + + N + LK D+ R R+ Sbjct: 287 HTAMGGRLLKRWLSRPLLSIEEINKRQEMVQSLLDNYFTRENVIDALKGVYDLERLTGRI 346 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 G +++ + +++ IL+ ++D EL+ +K+ L + + + +S+ L Sbjct: 347 AFGNVNARELLQLSRSLQAVPVILDALKQSD-STELKDFADKIDPL-KGVAELISTTLVK 404 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 D P +GG ++DG DA LD R + K+ +A ++ E+T I+NLK+ +N GY Sbjct: 405 DPPILTTEGGLIQDGVDAQLDRYRDAMNNGKKWLAQMEADEREKTGIENLKVGYNKVFGY 464 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +I+V++ + S + DR+ +QT++N R+ T EL + EN I A + +E + Sbjct: 465 YIQVSNGNKSKV-----PLDRYTRKQTLTNAERYITPELKEHENLIMEAQTRSTDLEYDL 519 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST-NFIVKDGRHP 620 F L + + +L +A +D+ A +A+E NYCRP ++ N V GRHP Sbjct: 520 FVKLREEVKKYIPALQKLGNQLAALDVYTGFATVAEENNYCRPSFHSANQNIDVVGGRHP 579 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + ++ +I ND ++ D ++L+TGPNM GKST++RQ ALI IMAQ+G Sbjct: 580 VVEKVM---TAGSYIPNDVKMADDTD-----IYLITGPNMSGKSTYMRQMALIAIMAQVG 631 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA A + I D++F+R+G+AD+L SG+STFMVEM E L AT +S V+ DEIGR Sbjct: 632 SFVPADSADLPIFDQIFTRIGAADDLISGKSTFMVEMSEANEALQYATKRSLVLFDEIGR 691 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A ++YLH+ + L ATH+HELTDL K+L N + ++ N +I Sbjct: 692 GTATYDGMALAGAIVKYLHDKVGAKTLFATHYHELTDLDKTLHHLKNIHVGATEENGKLI 751 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 FLHK++PG AD SYGI V +LAGLP+ V+ A +LK E Sbjct: 752 FLHKILPGPADQSYGIHVAQLAGLPHRVLREATKLLKRLE 791 >gi|17545870|ref|NP_519272.1| DNA mismatch repair protein [Ralstonia solanacearum GMI1000] gi|44888233|sp|Q8Y093|MUTS_RALSO RecName: Full=DNA mismatch repair protein mutS gi|17428165|emb|CAD14853.1| probable dna mismatch repair protein muts [Ralstonia solanacearum GMI1000] Length = 882 Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust. Identities = 297/829 (35%), Positives = 446/829 (53%), Gaps = 50/829 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+++KS +P +LVFYRMGDFYELFF+DA A+R L ITLT RG G+ I M G Sbjct: 22 TPMMQQYLKLKSAHPHTLVFYRMGDFYELFFEDAEKAARLLDITLTSRGTTNGQPIRMAG 81 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H Y+ KL+K+G +AICEQI P K V R VVR+VTPGTLT+ LL Sbjct: 82 VPFHAVEQYLAKLVKLGESVAICEQIGDPAT-----TKGPVERKVVRVVTPGTLTDAALL 136 Query: 146 SPTDSNYLMAVARIRTEWA------IAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 S +N+L+A+A+I + +AW+++ G ++ + ++L ++ RI P E++ Sbjct: 137 SDKVNNHLLAIAQIPGKRGAAPLVGLAWLNLVGGELRLMECSAEQLDRELERIRPAEVLA 196 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 + L+ + L P+ FD R+ + + ++ FG + A Sbjct: 197 DDATLNAVAFDVARTRL-------PDWHFDVEAGARRLREQLGVASLVAFGCETLTAALA 249 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTL-----FI--DSAARSNLEILRTLSGSREQ 312 AA A+ T G R I T+ FI D+A R NLE+ TL G Sbjct: 250 AAGALLNYAAA------TQGQSLRHVIGLTVEHESEFIGLDTATRRNLELTETLRGQESP 303 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 +L +D T G RL + PL D R +I + ++ L++ Sbjct: 304 TLFSLLDTCATSMGSRLLRHWLHHPLRDRAVPQARQQAIEVLLAGDW--QSLRGTLRTLS 361 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE 432 DV R RL + P+D++ +RD + + + ++D +L G + +P+ Sbjct: 362 DVERITGRLALLSARPRDLSSLRDTLARLPEVRDQLPQSD-DAQLLGDLHAALAIPEDAH 420 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 L + + RDGG + G DA LDE R + + + + L+ + E T I NL+ Sbjct: 421 ALLQRAVMAEPAAMVRDGGVIARGYDADLDELRDISENCGQFLVDLEARERERTGIANLR 480 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 +++N G++IEVT+ A+ + D + RQT+ N R+ T EL E++ +A + Sbjct: 481 VEYNRVHGFYIEVTNGQAAKVPDD------YRRRQTLKNAERYITPELKAFEDKALSAQD 534 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 AL E +E L ++ L + +A D+ LA A ++ RP + ++ Sbjct: 535 RALSREKYLYEDLLQKLLPHLPVLKRIAAALAQADVLATLAERAHALSWSRPALTDAPGI 594 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 + RHP+VE+ ++Q F+ANDC L + + KL L+TGPNMGGKSTF+RQ AL Sbjct: 595 ELIRARHPVVEQQVEQ-----FVANDCVL-----QETRKLLLITGPNMGGKSTFMRQTAL 644 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 +V++A +G++VPA A IG +D++F+R+G+AD+LA GRSTFMVEM E A+IL++AT S Sbjct: 645 VVLLAYVGAFVPADAATIGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILHRATPNSL 704 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 V++DEIGRGT+T DGL++AWA +L NR L ATH+ ELT L + + N L Sbjct: 705 VLMDEIGRGTSTFDGLALAWAIARHLLSHNRSHTLFATHYFELTQLPQEFAQAANVHLSA 764 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 + +GI+FLH V G A SYG+QV +LAG+P VI A L E+ Sbjct: 765 VEHGDGIVFLHAVQEGPASQSYGLQVAQLAGVPQPVIRAARKRLAWLEQ 813 >gi|312796661|ref|YP_004029583.1| DNA mismatch repair protein mutS [Burkholderia rhizoxinica HKI 454] gi|312168436|emb|CBW75439.1| DNA mismatch repair protein mutS [Burkholderia rhizoxinica HKI 454] Length = 928 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 300/838 (35%), Positives = 441/838 (52%), Gaps = 60/838 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY+ IK+ +P +LV YRMGDFYELF++DA A+R L +TLT+RG G I M G Sbjct: 43 TPMMRQYLSIKADHPGTLVLYRMGDFYELFYEDAEKAARLLDLTLTQRGASAGNPIKMAG 102 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+ Y+ KL+K+G +AICEQI P +K V R VVR+VTPGTLT+ LL Sbjct: 103 VPHHSLEQYLAKLVKLGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTLTDAALL 157 Query: 146 SPTDSNYLMAVARIR------TEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 + YL+A+A + T +AW+++++G +++ D++ + I RI P E + Sbjct: 158 ADKSDAYLLALAPVHNRRGTLTGVGLAWLNLASGALRLTEVGADQVAAAIERIRPAETLV 217 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 S+ S A+ +L ++G + P FD S R+ + + ++D FG+ + Sbjct: 218 SD---SAAQALALPASVGTLTRV-PGWHFDPSSGAQRLCEQLAVASLDGFGAQTLSAACG 273 Query: 260 AAAAISYIK-KTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA A+ +TQ I + E + +D A R NLE+ TL G+ +L + Sbjct: 274 AAGALLLYAAQTQGQQLRHIRSLKVEHESEYIGLDPATRRNLELTETLRGTDSPTLFSLL 333 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPI--LINPIQKILKSSPDVPR 376 D T G RL + + R +I + P ++ ++ L+ DV R Sbjct: 334 DACCTSMGSRLLRHWLHHAPRNPAVARARQQAIGALLDGPPGNTLDALRHALRQIADVER 393 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 RL + P+D+A +RD LPE LR + L SL++ + Sbjct: 394 ITGRLALLSARPRDLASLRDTF------------GKLPE-LREQIAPLIAHSASLQQLNA 440 Query: 437 SM-------------LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 S+ ++ + RDGG + G DA LDE R + + + + L+ + Sbjct: 441 SLHAPPECTDLLQRAIAAEPAAMVRDGGVIARGYDAELDELRDISENCGQFLVDLESRER 500 Query: 484 EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDL 543 T I NL++++N G++IEVT + D + RQT+ N R+ T EL Sbjct: 501 TRTGIANLRVEYNKVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKAF 554 Query: 544 ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCR 603 E++ +A AL E ++ L A++ + +A +D+ +LA A+ + Sbjct: 555 EDKALSAQERALARERALYDALLQALLPHIGDCQRVAGALAELDVFASLADRARALEWIA 614 Query: 604 PIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 P D ++ GRHP+V+ ++Q FIANDC L KL L+TGPNMGGK Sbjct: 615 PSFDEQAGIEIEQGRHPVVQAQVEQ-----FIANDCRLGAER-----KLLLITGPNMGGK 664 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 STF+RQ ALI +MA +GSYVPA A G VD++F+R+G+AD+LA GRSTFMVEM E A+I Sbjct: 665 STFMRQTALITLMAYVGSYVPAKRACFGPVDRIFTRIGAADDLAGGRSTFMVEMTEAAAI 724 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLK 783 LN AT S V++DEIGRGT+T DGL++AWA +L N+ L ATH+ ELT L Sbjct: 725 LNDATPHSLVLMDEIGRGTSTFDGLALAWAIARHLISHNQSYTLFATHYFELTQLPAQCP 784 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 N L + + GI+FLH V G A+ SYG+QV +LAG+P VI A L E+ Sbjct: 785 TAANVHLSAVEHDHGIVFLHAVNEGPANQSYGLQVAQLAGVPQPVIRAARRHLALLEQ 842 >gi|59802243|ref|YP_208955.1| DNA mismatch repair protein [Neisseria gonorrhoeae FA 1090] gi|239999986|ref|ZP_04719910.1| DNA mismatch repair protein [Neisseria gonorrhoeae 35/02] gi|240013066|ref|ZP_04719979.1| DNA mismatch repair protein [Neisseria gonorrhoeae DGI18] gi|240017635|ref|ZP_04724175.1| DNA mismatch repair protein [Neisseria gonorrhoeae FA6140] gi|240114163|ref|ZP_04728653.1| DNA mismatch repair protein [Neisseria gonorrhoeae MS11] gi|240116801|ref|ZP_04730863.1| DNA mismatch repair protein [Neisseria gonorrhoeae PID18] gi|240119029|ref|ZP_04733091.1| DNA mismatch repair protein [Neisseria gonorrhoeae PID1] gi|240122256|ref|ZP_04735218.1| DNA mismatch repair protein [Neisseria gonorrhoeae PID24-1] gi|240122433|ref|ZP_04735389.1| DNA mismatch repair protein [Neisseria gonorrhoeae PID332] gi|240126718|ref|ZP_04739604.1| DNA mismatch repair protein [Neisseria gonorrhoeae SK-92-679] gi|240127146|ref|ZP_04739807.1| DNA mismatch repair protein [Neisseria gonorrhoeae SK-93-1035] gi|254493446|ref|ZP_05106617.1| DNA mismatch repair protein [Neisseria gonorrhoeae 1291] gi|260441594|ref|ZP_05795410.1| DNA mismatch repair protein MutS [Neisseria gonorrhoeae DGI2] gi|268595791|ref|ZP_06129958.1| DNA mismatch repair protein mutS [Neisseria gonorrhoeae 35/02] gi|268600236|ref|ZP_06134403.1| DNA mismatch repair protein [Neisseria gonorrhoeae MS11] gi|268602476|ref|ZP_06136643.1| DNA mismatch repair protein [Neisseria gonorrhoeae PID18] gi|268604743|ref|ZP_06138910.1| DNA mismatch repair protein [Neisseria gonorrhoeae PID1] gi|268681022|ref|ZP_06147884.1| DNA mismatch repair protein [Neisseria gonorrhoeae PID332] gi|268685297|ref|ZP_06152159.1| DNA mismatch repair protein [Neisseria gonorrhoeae SK-92-679] gi|268685503|ref|ZP_06152365.1| DNA mismatch repair protein [Neisseria gonorrhoeae SK-93-1035] gi|291044964|ref|ZP_06570673.1| DNA mismatch repair protein mutS [Neisseria gonorrhoeae DGI2] gi|293398034|ref|ZP_06642240.1| DNA mismatch repair protein MutS [Neisseria gonorrhoeae F62] gi|75507286|sp|Q5F5J4|MUTS_NEIG1 RecName: Full=DNA mismatch repair protein mutS gi|59719138|gb|AAW90543.1| putative DNA mismatch repair protein [Neisseria gonorrhoeae FA 1090] gi|226512486|gb|EEH61831.1| DNA mismatch repair protein [Neisseria gonorrhoeae 1291] gi|268549180|gb|EEZ44598.1| DNA mismatch repair protein mutS [Neisseria gonorrhoeae 35/02] gi|268584367|gb|EEZ49043.1| DNA mismatch repair protein [Neisseria gonorrhoeae MS11] gi|268586607|gb|EEZ51283.1| DNA mismatch repair protein [Neisseria gonorrhoeae PID18] gi|268588874|gb|EEZ53550.1| DNA mismatch repair protein [Neisseria gonorrhoeae PID1] gi|268621306|gb|EEZ53706.1| DNA mismatch repair protein [Neisseria gonorrhoeae PID332] gi|268625581|gb|EEZ57981.1| DNA mismatch repair protein [Neisseria gonorrhoeae SK-92-679] gi|268625787|gb|EEZ58187.1| DNA mismatch repair protein [Neisseria gonorrhoeae SK-93-1035] gi|291011858|gb|EFE03854.1| DNA mismatch repair protein mutS [Neisseria gonorrhoeae DGI2] gi|291611980|gb|EFF41049.1| DNA mismatch repair protein MutS [Neisseria gonorrhoeae F62] gi|317165281|gb|ADV08822.1| DNA mismatch repair protein MutS [Neisseria gonorrhoeae TCDC-NG08107] Length = 864 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 312/893 (34%), Positives = 475/893 (53%), Gaps = 62/893 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM+QY+ IK+ + D LVFYRMGDFYELF DDA+ A++ L ITLT RG+ G I M G Sbjct: 7 SPMMQQYLGIKAQHTDKLVFYRMGDFYELFLDDAVEAAKLLDITLTTRGQMDGVPIKMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ +L+K+G +AICEQ+ + K V R VVR+VTPGTLT+ LL Sbjct: 67 VPFHAAEQYLARLVKLGKSVAICEQV-----GEVGAGKGPVERKVVRIVTPGTLTDSALL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 ++N ++AV+ + +AW + +G FK + D+L ++ R+ EI+ + Sbjct: 122 EDKETNRIVAVSPDKKYIGLAWASLQSGEFKTKLTTADKLNDELARLQAAEILLPDS--- 178 Query: 206 HAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQ---VEKTAAA 261 K+ + V + N + F E + +Y+ + FG S+ V AA Sbjct: 179 ----KNAPQLQTASGVTRLNAWQFAADAGEKLLTEYFGCQDLRGFGLDSKEHAVSIGAAG 234 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 A ++YI+ TQ + + E + +D+A R NLEI +TLSG + +L +D Sbjct: 235 ALLNYIRLTQNLMPQHLDGLSLETDSQYIGMDAATRRNLEITQTLSGKKTPTLFSILDGC 294 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G RL A + PL + I R +++ P+Q LKS D+ R +R+ Sbjct: 295 ATHMGSRLLALWLHHPLRNRAHIRARQEAVTALESQ---YEPLQCHLKSIADIERIAARI 351 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL-PQSL--EKTLSSM 438 +G P+D+A +RD + I DL +E LK + P++L +TL + Sbjct: 352 AVGNARPRDLASLRDSLFELAQI-------DLSATGSSLLETLKAVFPETLPVAETLKAA 404 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + + + +DG + G LDE R +++ + L+ K E T + LK++ N Sbjct: 405 VMPEPSVWLKDGNVINHGFHPELDELRRIQNHGDEFLLDLEAKERERTGLSTLKVEFNRV 464 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 G++IE++ + A D + RQT+ N RF T EL E+++ A + AL +E Sbjct: 465 HGFYIELSKTQAEQAPAD------YQRRQTLKNAERFITPELKAFEDKVLTAQDQALALE 518 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F+ + + L A++ A +D+ + LAKE+N+ RP + +++GR Sbjct: 519 KQLFDGVLKNLRTALPQLQKAAKAAAALDVLSTFSALAKERNFVRPEFADYPVVHIENGR 578 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ ++ F AN DL + +L LLTGPNMGGKST++RQ ALIV++A Sbjct: 579 HPVVEQQVRH-----FTANHTDLD-----HKHRLMLLTGPNMGGKSTYMRQVALIVLLAH 628 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 G +VPA A IG VD++F+R+G++D+LAS RSTFMVEM ETA IL+ AT QS V++DE+ Sbjct: 629 TGCFVPADAATIGPVDQIFTRIGASDDLASNRSTFMVEMSETAYILHHATEQSIVLMDEV 688 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGL++A A E+L + N+ L ATH+ ELT L ++ N L + Sbjct: 689 GRGTSTFDGLALAHAIAEHLLQKNKSFSLFATHYFELTYLPEAHAAAVNMHLSALEQGRD 748 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 I+FLH++ PG A SYGI V KLAGLP + A L E N+ + ++ Sbjct: 749 IVFLHQIQPGPAGKSYGIAVAKLAGLPVRALKAAQKHLNGLENQAAANRPQLDIF----S 804 Query: 859 TKESKNNLSKNDKLFVEK-------------IKCLNLDEMSPLTALKTLYAVK 898 T S+ N FV+K ++ L+ D ++P AL LY +K Sbjct: 805 TMPSEKGDEPNVDCFVDKAEEKHFEGILAAALENLDPDSLTPREALSELYRLK 857 >gi|328953643|ref|YP_004370977.1| DNA mismatch repair protein mutS [Desulfobacca acetoxidans DSM 11109] gi|328453967|gb|AEB09796.1| DNA mismatch repair protein mutS [Desulfobacca acetoxidans DSM 11109] Length = 889 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 294/829 (35%), Positives = 468/829 (56%), Gaps = 43/829 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM+RQY++IK+ + + L+ ++MGDFYELFF DA A++ L I LT R + + IPM G Sbjct: 52 TPMLRQYLDIKARHSEGLLLFQMGDFYELFFQDAQTAAQDLNIALTSRSRAEEEAIPMAG 111 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P+H A YI +L++ GHR+ IC+Q+E+P +AK LVRR V R++T G + + L Sbjct: 112 FPLHAAEVYISRLLEQGHRLVICDQVETPAQAK-----GLVRREVTRILTRGVIVDPDKL 166 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTS-NHDRLISDIMRIDPREIIFSEKEL 204 + ++N+L A +W IA ++STG F+++ N + + ++ R+ P E++ Sbjct: 167 AAKEANFLAAAIWQGRKWGIALAELSTGDFRLTEGQNLEAMWEELYRLRPVELLLP-NSC 225 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISES--RIADYYNITTVDTFG-SFSQVEKTAAA 261 ++ F L Q D + + R+ + +D FG + + AA Sbjct: 226 QTEDFSVSFAWLNPSPSLQYRSGEDFHLEAATRRLQRHLGTLFLDGFGLAGYSLGLQAAG 285 Query: 262 AAISYIKKTQMVNKPT-----IGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLL 315 A + Y+++ + P I Y + + L +D A NLEI + SR SLL Sbjct: 286 AILCYLEENR-TGTPRHLTSLIPYAQSD----YLGLDEATIRNLEIFENFRTRSRPNSLL 340 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T GGR A+ + PL T I RL ++F+ + +L + +LK D+ Sbjct: 341 DIVDSTQTPMGGRKLAQWLRYPLKQLTAIQERLAVVSFYKEQSLLRQKWRDLLKGLVDLE 400 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 R +R+ + + P+D+ +++ + + L L L +E L + Sbjct: 401 RLTARIVLEQATPRDLIALKNSLAQLPALRCLLPPELPPLAANLAAELEDLT----DVHD 456 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + + L + P ++GG ++G + LDE SL + K IA L+ + E T I +LK+ Sbjct: 457 AIKAALRPEPPLSIKEGGIFQEGYNTELDELISLTRRDKDWIARLEAREKELTGIGSLKV 516 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 ++N GY++EV+ ++ ++ + FI +QT+ N RF T EL + E+R+ A + Sbjct: 517 RYNKVFGYYLEVSKANLHLVP------EYFIRKQTLVNAERFITAELKEYESRLLGAEEA 570 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 +EL+ F+ L I +++ L + +A +D+ ALA +A + Y P + Sbjct: 571 RKDLELQLFQELRRQIGQEAARLKKVADALATLDVLAALADIAARRQYACPRLQEGRGIR 630 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + GRHP++E+ L F+ ND DL ND+ + L ++TGPNM GKST LRQ ALI Sbjct: 631 IVQGRHPVIEQVLPPGG---FVPNDIDL---NDRAT--LMIVTGPNMAGKSTILRQVALI 682 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MAQ+GS+VPA+ A IG+VD++F+RVG+ D++ G+STF+VEM ETA+IL+QAT +S V Sbjct: 683 ALMAQIGSFVPAAAADIGVVDRIFTRVGAVDDIGRGQSTFLVEMHETANILHQATPRSLV 742 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 +LDEIGRGT+T DGLS+AWA EYLH+ L ATH+HELT LS+ R HN + Sbjct: 743 VLDEIGRGTSTFDGLSLAWAVAEYLHDLAGEGVLTLFATHYHELTALSRLKPRVHNLQVA 802 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 V++++ I+FLH++ PG A+ SYGIQV +LAG+P VI+RA ++L+ E Sbjct: 803 VAEASGDIVFLHQLRPGAANKSYGIQVARLAGVPAPVIARAQEVLENIE 851 >gi|315646575|ref|ZP_07899693.1| DNA mismatch repair protein MutS [Paenibacillus vortex V453] gi|315278218|gb|EFU41538.1| DNA mismatch repair protein MutS [Paenibacillus vortex V453] Length = 924 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 289/819 (35%), Positives = 458/819 (55%), Gaps = 31/819 (3%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM+ QY+ +K D+ +F+R+GDFYE+FFDDA+LAS+ L ITLT R + IPMCG Sbjct: 5 TPMIEQYLNVKEQAKDAFLFFRLGDFYEMFFDDAILASKELEITLTGREGGGTEKIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YIQ+LI+ G+++AICEQ+E K +VRR +VR+VTPGT+ + +++ Sbjct: 65 VPYHSAEGYIQRLIEKGYKVAICEQMED-----ASVTKGMVRREIVRVVTPGTIMDGKVV 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTS--NHDRLISDIMRIDPREIIFSEKE 203 +NY++ V +++ D+STG +++ + + L +I +P EII Sbjct: 120 HDKSNNYMVCVTEAGGLMSLSACDLSTGELYVTSVPWSEEWLRDEIGLYEPSEIIGDAAL 179 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 L +SL + V A + ++ ++ + + + + + Sbjct: 180 LEIISSQSLPGSRNIVYTAWDR--REDALVRTQFGE-------PAWARLEEERRACVSLL 230 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 ISY+ +TQ + + + + +D R NLE++ T+ S++ SLL +D + Sbjct: 231 ISYLSETQKRSLGQLTQIASYEPGQYMVLDPFTRRNLELVETVRERSKKGSLLWLLDRTE 290 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G RL RI PL ++I RL+++ IL ++ LK D+ R + R+ Sbjct: 291 TSMGARLLRRRIDKPLLSRSRIEERLEAVEHLYNQYILREDLRMALKEIYDLERLVGRIA 350 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 G +D+ ++ +R ++ L ++ P E V + L + + + D+ Sbjct: 351 FGSANGRDLNALKLSLRQIPSLKELCAQS--PSETLRRVAADTDICDDLCELIEDAIVDE 408 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P RDGG ++ G LDE R KR IA L+ K T IK+LKI +N GYF Sbjct: 409 PPVSVRDGGIIKPGYHERLDEFREASTSGKRWIAELEAKERAATGIKSLKIGYNKVFGYF 468 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IEVT S+ S L + R+ +QT++N R+ T EL + E I A + +E F Sbjct: 469 IEVTKSNLSSL-----PEGRYERKQTLANAERYVTPELKEKEGLILEAQEKMVDLEYALF 523 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 L + + Q L ++ IA ID+ +LA ++ E + +P + + ++IV+ GRHP+V Sbjct: 524 TELRDKLNTQVSRLQKLAERIAEIDVYQSLAAVSAEYRFVKPELSDGYDYIVEGGRHPVV 583 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 E +K + FIAN DL K+ + L+TGPNM GKST++RQ AL+ I+AQ+G + Sbjct: 584 ESVMKDSA---FIANGTDLR----KDGSSILLITGPNMAGKSTYMRQVALLSILAQLGCF 636 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA A I +VD++F+R+G+AD+L G+STFMVEM + + +AT +S +I+DE+GRGT Sbjct: 637 VPAERAVIPLVDRIFTRIGAADDLIGGQSTFMVEMADIQVMTEKATPRSLIIIDELGRGT 696 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFL 802 +T +G++IA A IEY+H+ C+ L++THFHEL L +SL N ++ V +S + + FL Sbjct: 697 STSEGMAIAQAVIEYVHDHIGCKALVSTHFHELAHLQESLGGLKNYSMAVQESGDKVHFL 756 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 K+IPG AD SYGI +LAGLP ++I RAY +L+ E+ Sbjct: 757 RKLIPGAADSSYGIYCARLAGLPGSIIDRAYGLLQGLEQ 795 >gi|319900560|ref|YP_004160288.1| DNA mismatch repair protein MutS [Bacteroides helcogenes P 36-108] gi|319415591|gb|ADV42702.1| DNA mismatch repair protein MutS [Bacteroides helcogenes P 36-108] Length = 872 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 286/821 (34%), Positives = 460/821 (56%), Gaps = 32/821 (3%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+Q++++K+ +PD+++ +R GDFYE + DA++AS LGITLTKR GK + M G Sbjct: 8 TPMMKQFLDLKAKHPDAVMLFRCGDFYETYSTDAIVASEILGITLTKRANGKGKTVEMAG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KLI+ G R+AIC+Q+E P KK LV+R + LVTPG D +L Sbjct: 68 FPHHALDTYLPKLIRAGKRVAICDQLEDPKLTKK-----LVKRGITELVTPGVSINDNVL 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 + ++N+L AV + +A++DISTG F + D + + P+E++F + Sbjct: 123 NYRENNFLAAVHFGKGTCGVAFLDISTGEFLTAEGPFDYVDKLLNNFAPKEVLFERGK-- 180 Query: 206 HAEYKSLFE-TLGN--VAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 + +FE GN + F + + ++ ++ + + FG A+ Sbjct: 181 ----RLMFEGNFGNKFFTFELDDWVFTETTAREKLLKHFEVKNLKGFGVEHLKNGIIASG 236 Query: 263 AI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 AI Y+ TQ I R + + +D +LE++ +++ SLL ID + Sbjct: 237 AILQYLIMTQHTQIGHITSLARIEEDKYVRLDKFTVRSLELMGSMNDGG-SSLLNVIDKT 295 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 I+ G RL + PL D IN RL+ + +F + P I++ L D+ R +S++ Sbjct: 296 ISPMGARLLKRWLVFPLKDVQPINERLNVVEYFFRQPDFKELIEEQLHLIGDLERIISKV 355 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 +GR P+++ ++ +++ I ++ D L E+L + +S+ + + + Sbjct: 356 AVGRVSPREVVALKVALQAIEPIKEACVQAD-NASLNHIGEQLN-ICRSIRDRIDKEIDN 413 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 D P GG ++ G A LDE R + K + +Q + +E T I +LKI +NN GY Sbjct: 414 DPPLLINKGGVIKSGVSAELDELRRIAYSGKDYLLQVQQRESELTGIPSLKIGYNNVFGY 473 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IEV + + ++ +I +QT+ N R+ T EL + E +I A + L++E + Sbjct: 474 YIEVRNVHKEKVPQE------WIRKQTLVNAERYITQELKEYEEKILGAEDKILVLETQL 527 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 + L A+ E ++ + IA +D ++ A A+E NY RP+I + + GRHP+ Sbjct: 528 YTELVQALSEFIPAIQIDANQIARLDCLLSFATAARENNYIRPVISDDEVLEIHQGRHPV 587 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 +EK L + +IAND L D + ++ ++TGPNM GKS LRQ ALI ++AQ+GS Sbjct: 588 IEKQLP--IGEKYIANDVML----DSTTQQIIIITGPNMAGKSALLRQTALITLLAQIGS 641 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA AHIG+VDK+F+RVG++DN++ G STFMVEM E A ILN + +S V+ DE+GRG Sbjct: 642 FVPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNLSPRSLVLFDELGRG 701 Query: 742 TATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 T+T DG+SIAWA +E++HE + R L ATH+HEL ++ KS KR N + V + + + Sbjct: 702 TSTYDGISIAWAIVEHIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEVDNKV 761 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 IFL K+ G ++HS+GI V KLAG+P +++ RA +IL E Sbjct: 762 IFLRKLERGGSEHSFGIHVAKLAGMPKSIVKRADEILHQLE 802 >gi|34810696|pdb|1OH5|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With A C:a Mismatch gi|34810697|pdb|1OH5|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With A C:a Mismatch gi|34810700|pdb|1OH6|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With An A:a Mismatch gi|34810701|pdb|1OH6|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With An A:a Mismatch gi|34810704|pdb|1OH7|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With A G:g Mismatch gi|34810705|pdb|1OH7|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With A G:g Mismatch gi|34810708|pdb|1OH8|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With An Unpaired Thymidine gi|34810709|pdb|1OH8|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With An Unpaired Thymidine gi|55670651|pdb|1W7A|A Chain A, Atp Bound Muts gi|55670652|pdb|1W7A|B Chain B, Atp Bound Muts gi|288562822|pdb|2WTU|A Chain A, Crystal Structure Of Escherichia Coli Muts In Complex With A 16 Basepair Oligo Containing An A.A Mismatch. gi|288562823|pdb|2WTU|B Chain B, Crystal Structure Of Escherichia Coli Muts In Complex With A 16 Basepair Oligo Containing An A.A Mismatch Length = 800 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 301/840 (35%), Positives = 457/840 (54%), Gaps = 62/840 (7%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+ +K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLRLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEG---RRGLRRRPLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAGLQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFIDKPGIRITEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 740 EGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 799 >gi|300704478|ref|YP_003746081.1| methyl-directed DNA mismatch repair protein [Ralstonia solanacearum CFBP2957] gi|299072142|emb|CBJ43474.1| methyl-directed DNA mismatch repair protein [Ralstonia solanacearum CFBP2957] Length = 886 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 298/829 (35%), Positives = 444/829 (53%), Gaps = 50/829 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+++KS +P +LVFYRMGDFYELFF+DA A+R L ITLT RG G+ I M G Sbjct: 22 TPMMQQYLKLKSAHPHTLVFYRMGDFYELFFEDAEKAARLLDITLTSRGSTNGQPIRMAG 81 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H Y+ KL+K+G AICEQI P K V R VVR+VTPGTLT+ LL Sbjct: 82 VPFHAVEQYLAKLVKLGESAAICEQIGDPAT-----TKGPVERKVVRVVTPGTLTDAALL 136 Query: 146 SPTDSNYLMAVARIRTEWA------IAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 S +N+L+A+A+I + +AW+++ G ++ D+L ++ RI P E++ Sbjct: 137 SDKVNNHLLAIAQIPGKRGAAPLVGLAWLNLVGGELRLMECGADQLERELERIRPAEVLS 196 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 + L+ Y L P+ FD R+ + + ++ FG+ + A Sbjct: 197 DDATLNAIAYDVARTRL-------PDWHFDVEAGARRLREQLGVASLVAFGAETLTAALA 249 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTL-----FI--DSAARSNLEILRTLSGSREQ 312 AA A+ T G R I T+ FI D+A R NLE+ TL G Sbjct: 250 AAGALLNYAAA------TQGQSLRHVIGLTVEHESEFIGLDTATRRNLELTETLRGQESP 303 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 +L +D T G RL + PL D R +I + ++ L++ Sbjct: 304 TLFSLLDTCSTSMGSRLLRHWLHHPLRDRAVPQARQQAIEELLAGDW--QSLRGTLRTLS 361 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE 432 DV R RL + P+D++ +RD + + + ++D L G + +P+ Sbjct: 362 DVERITGRLALLSARPRDLSSLRDTLARLPEVRDQLPQSD-AAPLLGDLHAALAIPEDAH 420 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 L + + RDGG + G DA LDE R + + + + L+ + E T I NL+ Sbjct: 421 ALLQHAVMAEPAAMVRDGGVIARGYDADLDELRDISENCGQFLVDLEARERERTGIANLR 480 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 +++N G++IEVT+ A+ + D + RQT+ N R+ T EL E++ +A + Sbjct: 481 VEYNRVHGFYIEVTNGQAAKVPDD------YRRRQTLKNAERYITPELKTFEDKALSAQD 534 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 AL E +E L ++ + + +A D+ LA A ++ RP + ++ Sbjct: 535 RALSREKSLYEDLLQKLLPHLPAFKRIAAALAQADVLATLAERAHALSWSRPALTDAPGI 594 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 + RHP+VE+ ++Q F+ANDC L + + KL L+TGPNMGGKSTF+RQ AL Sbjct: 595 ELIRARHPVVEQQVEQ-----FVANDCVL-----QETRKLLLITGPNMGGKSTFMRQTAL 644 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 +V++A +G++VPA A IG +D++F+R+G+AD+LA GRSTFMVEM E A+IL++AT S Sbjct: 645 VVLLAYVGAFVPADAATIGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILHRATPNSL 704 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 V++DEIGRGT+T DGL++AWA +L NR L ATH+ ELT L + + N L Sbjct: 705 VLMDEIGRGTSTFDGLALAWAIARHLLSHNRSHTLFATHYFELTQLPQEFAQASNVHLSA 764 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 + +GI+FLH V G A SYG+QV +LAG+P VI A L E+ Sbjct: 765 VEHGDGIVFLHAVQEGPASQSYGLQVAQLAGVPQPVIRAARKRLAWLEQ 813 >gi|150020893|ref|YP_001306247.1| DNA mismatch repair protein MutS [Thermosipho melanesiensis BI429] gi|189083203|sp|A6LLR1|MUTS_THEM4 RecName: Full=DNA mismatch repair protein mutS gi|149793414|gb|ABR30862.1| DNA mismatch repair protein MutS [Thermosipho melanesiensis BI429] Length = 819 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 291/822 (35%), Positives = 469/822 (57%), Gaps = 55/822 (6%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 NL+ TPMM+QY+ IK D+++ +R+GDFYE FF+DA + S+ L I LTKR ++ Sbjct: 3 NLEKLTPMMKQYMGIKEKYKDAILLFRLGDFYEAFFEDAEIISKVLNIVLTKR-----QN 57 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 PM G+P H ++Y++KL++ G+++AICEQ+E +AK +V+R V R++TPGT+ Sbjct: 58 APMAGIPYHALDNYLKKLVESGYKVAICEQMEDASQAK-----GIVKREVTRVITPGTII 112 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 ED+LLS D+NYLMAV ++ A+ID+STG + + + D ++I + Sbjct: 113 EDELLS-NDNNYLMAVI-FDEKYVSAFIDVSTGELFLKSFDTFLEFVDFVKISSISQVIC 170 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 KEL + L E + ++ V + + ++ E +I + Y + +++ +++EK Sbjct: 171 SKEL----FDKLKEEIPHLFVEELDEWYFQGYEE-KIKETYGLFSIEHL-EITELEKKVL 224 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 A Y++ T M NKP P+R + + +DS NL ++ G + ++L ++ Sbjct: 225 GALFKYLEYTLMENKPP-QKPKRLEGSKYMILDSKTVENLSLI---PGEKGKNLFDILNK 280 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G RL + I PL + +I R + F + +L+N +++ L D+ R L+R Sbjct: 281 TKTSMGARLLKKWILQPLKEKKEILERQKLVEAFYNDHLLLNEVREYLSGVYDLERILTR 340 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK------T 434 L G+ PKD+ ++ RS L+L + + LR E L QSL + Sbjct: 341 LGYGKVSPKDLVSLK---RS------LYLVPSIKDALRTN-ENLVSFAQSLNEFNEVVGI 390 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L L D+ DG ++ G LD+ R+L S+ + Q E+T I+ L++ Sbjct: 391 LEKALYDEPSNAPGDGNVIKGGYSVELDDYRNLLFHSEEKLKEFQESEREKTGIQKLRVG 450 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N GY+IEV + D +I +QT+ N R+ T EL + E +I +A Sbjct: 451 FNQVFGYYIEVPKGQVKNVP------DYYIRKQTLVNSERYITQELKEFEEKIMSAREKV 504 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 LIE FE L + E + L N +Q ++ +D LA++A+ Y +P F V Sbjct: 505 ELIEKSLFEELKQKLSEYIDGLRNLAQKLSELDAISNLAMVARLYGYTKPKF-TGGEFYV 563 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 K+ RH +VE+ + F+AND + +D+ +++++TGPNM GKST++RQ LI Sbjct: 564 KNARHAVVERYVSD-----FVANDIYM---DDRR--RMYIVTGPNMSGKSTYIRQVGLIA 613 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 +MAQ+GS+VPA A I I D++F+R+G+ D++++G+STF++EM E A IL +AT +S V+ Sbjct: 614 VMAQIGSFVPADDAEIPIFDRVFTRMGARDDISTGKSTFLIEMSEVALILEKATKKSLVL 673 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDE+GRGT+T DG+SIAWA EY++ C + ATHF ELT+LS + N T++V + Sbjct: 674 LDEVGRGTSTFDGISIAWAMSEYIYNEIGCETMFATHFTELTELSDVYEGIKNLTIEVRE 733 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 +N G++FLHKV+ GIAD SYGI+V ++AG+P+ V+ RA +IL Sbjct: 734 TNNGVVFLHKVVEGIADRSYGIEVAQIAGVPDGVVERAKEIL 775 >gi|325845056|ref|ZP_08168372.1| DNA mismatch repair protein MutS [Turicibacter sp. HGF1] gi|325488932|gb|EGC91325.1| DNA mismatch repair protein MutS [Turicibacter sp. HGF1] Length = 879 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 303/910 (33%), Positives = 499/910 (54%), Gaps = 80/910 (8%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ IK D+ VF+R+GDFYELFF+DA LA++ L I LT R + +PMCG Sbjct: 8 TPMMQQYLTIKENYQDAFVFFRLGDFYELFFEDAQLAAKELEIALTGREAGAEERVPMCG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A++YI +LI+ G+++A+CEQ+E P AK +VRR VVR++TPGT+ L Sbjct: 68 VPHHAADNYINRLIEKGYKVAVCEQVEDPASAK-----GVVRREVVRMLTPGTVMNQNAL 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREIIFSEKE 203 + ++N+++++ ++I + D+STG D L+ +++ + +EI+ Sbjct: 123 NEKENNFIISIVGTTQGYSIVYSDLSTGENYAMNLEKDAQVLMGELISLGCKEIVIG--- 179 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 E K +F+ L A+ Q + F+ + + Y I + S Q A Sbjct: 180 -PDVEIK-MFDNLR--ALKQIVLSFEENCI---LPIEYQILVSEISDSNLQ---AAFGRL 229 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSLLKTID 319 I+Y+ +TQ K +G+ + + L ID +R NLE+ T+ S SR+ SLL +D Sbjct: 230 INYLIRTQ---KSALGHLQPVSLTKNDDFLHIDYNSRRNLELTETIRSKSRQGSLLWLLD 286 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL + I P + I RLD + FI + ++ +++ L D+ R Sbjct: 287 KTKTAMGSRLLKQWIERPCINEQVIKERLDVVEAFIGDFMVKEELKQHLNEVYDLERLSG 346 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT--LSS 437 R+ G +D+ + ++ NI +L + +P +L+K+ T L Sbjct: 347 RIGFGNANARDLLQLNSSLKQIPNIKSLLSQLSIP----SVFSQLEKMVDCTHMTQLLEK 402 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + ++ P ++GG ++DG + +LDE R + + K I +L+ + E+T IK+LKIK N Sbjct: 403 AIVENPPIGIKEGGIIKDGYNETLDEYRYVINHGKDWILALEAQEREKTGIKSLKIKFNK 462 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IE++ ++ ++ ++ + +QT+ N RF T EL + EN I NA ++ + Sbjct: 463 VFGYYIEISKANLHLIPENA----GYERKQTLVNAERFVTQELKEKENLILNAEEKSIQL 518 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E E F L + + + ++V+A D+ A A +++E Y RP+++ + +KDG Sbjct: 519 EYELFSELRGIVKNEIPKIQQIAKVLAYFDVLQAFATMSEENRYTRPMLNKNHVIEIKDG 578 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VEK LK ++ NDC + P+D + + L+TGPNM GKST++RQ ALI IMA Sbjct: 579 RHPVVEKVLKDVQ---YVENDCIM--PSDLS---ILLITGPNMSGKSTYMRQLALISIMA 630 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+G +VPAS A++ I D++F+R+G+AD+L SG STFMVEM+ET L AT S ++LDE Sbjct: 631 QIGCFVPASSANLPIFDQVFTRIGAADDLVSGHSTFMVEMMETNYALEHATKDSLILLDE 690 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGTAT DG+++A + IEY+H+ + L +TH+HELT L + N ++ + Sbjct: 691 IGRGTATFDGMALAQSIIEYVHDNIGAKTLFSTHYHELTQLEQQCPHLQNRHVRAEEHQG 750 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 +IF+HKV+ G +D SYGI V ++A LP+ +I+RA ++L E +D + P Sbjct: 751 QLIFMHKVMEGPSDKSYGIHVAEIAKLPSPLITRAKELLTALE-------EDKVMIQPAP 803 Query: 858 QTKESKNNLSKNDKL----------------------------FVEKIKCLNLDEMSPLT 889 KE L + +L +E+++ ++L +++P+ Sbjct: 804 VVKEEPKVLGGSGQLSLFEEAKPIVKEVVKVEKKVEIVNPYEDIIEELQSIDLYQLTPMQ 863 Query: 890 ALKTLYAVKA 899 A+ +Y +K Sbjct: 864 AMNAMYEIKV 873 >gi|187935238|ref|YP_001886016.1| DNA mismatch repair protein MutS [Clostridium botulinum B str. Eklund 17B] gi|238691604|sp|B2TIC3|MUTS_CLOBB RecName: Full=DNA mismatch repair protein mutS gi|187723391|gb|ACD24612.1| DNA mismatch repair protein MutS [Clostridium botulinum B str. Eklund 17B] Length = 942 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 291/822 (35%), Positives = 473/822 (57%), Gaps = 34/822 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM +Y++ K D ++FYR+GDFYE+FFDDAL SR L + LT + L + PMCG Sbjct: 4 TPMMVEYMKTKEEYNDCILFYRLGDFYEMFFDDALTVSRELELVLTGKNCGLEERAPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H A YI +L+ G+++AICEQ+E P + +K +V+R VV+++TPGT + Sbjct: 64 IPHHAAAAYIPRLVTKGYKVAICEQLEDP-----KQSKGIVKRGVVKVITPGTFIDSNSN 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREIIFSEKE 203 D+ YLM ++ ++ IA DISTG FK ++ N+ + L+ +I ++ P+EI+ + Sbjct: 119 LENDNTYLMVISEYEDKFGIAMSDISTGEFKTTSFNNIKMSLLDEISKVSPKEILV---D 175 Query: 204 LSHAEYKSLFETLGNV--AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 ++ E L + NV + F + +S+ + + ++ V ++ + Sbjct: 176 ININE--ELLTEINNVLPVLITKKDFNEFLVSKEELIEQFSDLEVSGLTIEREI---PSK 230 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 + YI +TQ ++ I E+ +I + + ID +R NLE+ ++ +++ SLL ID Sbjct: 231 VLLKYINETQKMSLTNINLLEQYEIINYMTIDGNSRRNLELTESIREKTKKGSLLWVIDK 290 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 S T GGR + I PL +I RL + + ++ LK D+ R + + Sbjct: 291 SATSMGGRTLRKWIDEPLIVKDEIEKRLSGVEEVFNSIGFNEDLRSALKEIYDIERIVGK 350 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + KD+ ++ + + + LKN E L+G E L +L + L+ + Sbjct: 351 ISNKNVNAKDLLSLKSSL-DKLPCIKELLKNTSSELLKGYYENLDELID-VRDLLNDSIK 408 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 +D ++G ++DG + +DE R + K IA+L+ + E T IK+LK+ +N G Sbjct: 409 EDPGLGLKEGNIIKDGYNNLVDELRESKLHGKEWIAALENREREFTGIKSLKVGYNKVFG 468 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IE++ S+ + + + R+I +QT++N RF T EL +E++I + + +E Sbjct: 469 YYIEISKSNYNSI-----PEGRYIRKQTLANAERFITEELKVMEDKILGSEEKLINLEYS 523 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F + + I E+ L ++++I+ +D LA++A E +Y +P I+ + DGRHP Sbjct: 524 IFVEIRDKIEEEISRLKKSARIISDLDGISTLALVALENDYIKPEINTDGLIKIIDGRHP 583 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + + F++N+ L ++ +L L+TGPNM GKST++RQ ALI +MAQMG Sbjct: 584 VVEKVIGKGD---FVSNNTAL----NQTDKELLLITGPNMAGKSTYMRQVALITLMAQMG 636 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA+ A+I I DK+F+R+G++D+LA G+STFMVEM E ++IL AT+ S V+LDE+GR Sbjct: 637 SFVPATSANISICDKIFTRIGASDDLAGGKSTFMVEMWEVSNILKNATSNSLVLLDEVGR 696 Query: 741 GTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GT+T DGLSIAW+ IEY+ + RC+ L ATH+HEL L L N ++ V + Sbjct: 697 GTSTYDGLSIAWSVIEYITKNKDLRCKTLFATHYHELVKLEGILPGVKNYSVAVKKLKDS 756 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 ++FL K++ G AD SYGI+V KLAGLP VI+RA +IL+ E Sbjct: 757 VVFLRKIVEGGADESYGIEVAKLAGLPENVINRAREILEDLE 798 >gi|329924183|ref|ZP_08279383.1| DNA mismatch repair protein MutS [Paenibacillus sp. HGF5] gi|328940833|gb|EGG37145.1| DNA mismatch repair protein MutS [Paenibacillus sp. HGF5] Length = 923 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 295/824 (35%), Positives = 461/824 (55%), Gaps = 43/824 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM+ QY+++K D+ +F+R+GDFYE+FFDDA+LAS+ L ITLT R + IPMCG Sbjct: 5 TPMIEQYLKVKEQARDAFLFFRLGDFYEMFFDDAILASKELEITLTGREGGGAEKIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YIQ+LI+ G+++AICEQ+E K +VRR +VR+VTPGT+ + +++ Sbjct: 65 VPYHSAEGYIQRLIEKGYKVAICEQMED-----ASVTKGMVRREIVRVVTPGTIMDGKVV 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST--SNHDRLISDIMRIDPREIIFSEKE 203 +NY++ V +++ D+STG +++ S+ + L +I +P EII Sbjct: 120 HDKSNNYMVCVTEAGGLMSLSACDLSTGELYVTSVPSSEEWLRDEIGIYEPSEIIGD--- 176 Query: 204 LSHAEYKSLFETLGNVAV-AQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE-----K 257 SL + + A+ N+ + + R D T FG + V + Sbjct: 177 ------ASLLGIISSQALPGSRNIVY---TAWDRREDALVRTQ---FGEAAWVRLEEERR 224 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLK 316 + ISY+ +TQ + + + + +D R NLE++ T+ S++ SLL Sbjct: 225 ACISLLISYLSETQKRSLGQLTQIASYEPGQYMVLDPFTRRNLELVETVRERSKKGSLLW 284 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D + T G RL RI PL ++I RL+++ IL ++ LK D+ R Sbjct: 285 LLDRTETSMGARLLRRRIDKPLLSRSRIEERLEAVEHLYNQYILREDLRMALKEIYDLER 344 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 + R+ G +D+ ++ +R ++ L ++ P E V + L + + Sbjct: 345 LVGRIAFGSANGRDLNALKLSLRQIPSLKELCAQS--PSETLRRVAADTDVCDDLCELIE 402 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + + ++ P RDGG ++ G LDE R KR IA L+ K T IK+LKI +N Sbjct: 403 NAIVNEPPVSVRDGGIIKPGYHERLDEFREASTSGKRWIAELEAKERAATGIKSLKIGYN 462 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+IEVT S+ S L + R+ +QT++N R+ T EL + E I A + Sbjct: 463 KVFGYYIEVTKSNLSSL-----PEGRYERKQTLANAERYVTPELKEKEGLILEAQEKMVD 517 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E F L + + Q L ++ IA ID+ +LA ++ E + +P + ++IV+ Sbjct: 518 LEYALFTELRDKLNTQVSRLQKLAERIAEIDVYQSLAAVSAEYRFVKPELSEGYDYIVEG 577 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE +K S FIAN DL K+ + L+TGPNM GKST++RQ AL+ I+ Sbjct: 578 GRHPVVEAVMKDSS---FIANATDLR----KDGSSILLITGPNMAGKSTYMRQVALLSIL 630 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQMG +VPA A I +VD++F+R+G+AD+L G+STFMVEM + + +AT +S +I+D Sbjct: 631 AQMGCFVPAERAVIPLVDRIFTRIGAADDLIGGQSTFMVEMADIQVMTEKATPRSLIIID 690 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 E+GRGT+T +G++IA A IEY+H+ C+ L++THFHEL L +SL N ++ V +S Sbjct: 691 ELGRGTSTSEGMAIAQAVIEYVHDHIGCKALVSTHFHELAHLQESLGGLKNYSMAVQESG 750 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + + FL K+IPG AD SYGI +LAGLP ++I RAY +L+ E Sbjct: 751 DKVHFLRKLIPGAADSSYGIYCARLAGLPGSIIDRAYGLLQGLE 794 >gi|19704028|ref|NP_603590.1| DNA mismatch repair protein MutS [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|44888229|sp|Q8RFK2|MUTS_FUSNN RecName: Full=DNA mismatch repair protein mutS gi|19714218|gb|AAL94889.1| DNA mismatch repair protein mutS [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 896 Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust. Identities = 310/896 (34%), Positives = 520/896 (58%), Gaps = 47/896 (5%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TP+M+QY +IK + ++ +R+GDFYE+FF+DA +AS+ LG+TLTKR + G+D+ Sbjct: 20 MSADTPLMQQYKKIKEEYQNEILMFRLGDFYEMFFEDAKIASKELGLTLTKRNREKGQDV 79 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 P+ GVP H+ YI KL++ G+ +AIC+Q+E P A +V+R V R++TPGT+ + Sbjct: 80 PLAGVPYHSVASYIAKLVEKGYSVAICDQVEDPKSAT-----GIVKREVTRVITPGTIID 134 Query: 142 DQLLSPTDSNYLMAVARIRTE--WAIAWIDISTG---IFKISTSNH-DRLISDIMRIDPR 195 L ++NY+ + TE AIA+ DI+TG +F+I N ++ ++++ +I Sbjct: 135 VDFLDKNNNNYIACIKINTTENIVAIAYTDITTGEFSVFEIKGKNFFEKALAEMNKIQAS 194 Query: 196 EIIFSEKELSHAEY----KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS 251 EI+ EK +++EY K LG PNV +ES + Y++I +++ F Sbjct: 195 EILLDEK--TYSEYIEILKEKISFLGVKFTEVPNV----RKAESYLTSYFDIMSIEVFSL 248 Query: 252 FSQ-VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR 310 S+ + + +A + YI + Q N+ E ++I + + ++ + ++NL ++ + Sbjct: 249 KSKDLAISTSANLLHYIDELQKGNELPFSKIEYKNIDNIMELNISTQNNLNLVPKRNEEA 308 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 + +LL +D +T G R + I +P D KI R +++F + +L I++ LK Sbjct: 309 KGTLLGVLDNCVTSVGSRELKKIIKNPFLDIEKIKQRQFYVDYFYNDVLLRENIREYLKD 368 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS 430 DV R ++ G KD+ +++ IR + + ++ +E++ ++ K+ Sbjct: 369 IYDVERIAGKIIYGTENGKDLLSLKESIRKSLETYKVLKEH---QEIKDILDIDVKILLD 425 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 + + +++ + P R+GG ++DG ++ LD+ R + K I ++ + E T IK Sbjct: 426 IYNKIELIINIEAPFSVREGGIIKDGYNSELDKLRKISKLGKDFILEIEQRERERTGIKG 485 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LKIK+N GYFIEVT ++ ++ +D +I +QT+ N R+ +L + E ++ A Sbjct: 486 LKIKYNKVFGYFIEVTKANEHLVPED------YIRKQTLVNSERYIVPDLKEYEEKVITA 539 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 + +E E F+ L++ I +SL + IA +DI A +A + +Y +P I + Sbjct: 540 KSKIEALEYELFKQLTSEIKGHIDSLYKLANRIANLDIVSNFAHIATKNSYVKPEIGDGD 599 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 +K GRHPIVE + S ++ ND L +DKN+ L +LTGPNM GKST+++Q Sbjct: 600 ILEIKGGRHPIVESLI---PSGTYVKNDIIL---DDKNN--LIILTGPNMSGKSTYMKQV 651 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 AL +IMA +GSYV A A I IVDK+F+RVG++D+L +G+STFM+EM E ASILN ATN+ Sbjct: 652 ALNIIMAHIGSYVAADCAKIPIVDKIFTRVGASDDLLTGQSTFMLEMTEVASILNNATNK 711 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 SF++LDEIGRGT+T DG+SIA A EY+H + + ATH+HELT+L K L+R N + Sbjct: 712 SFIVLDEIGRGTSTYDGISIATAITEYIHNNIGAKTIFATHYHELTELEKELERAINFRV 771 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE---KLYHHNQ 847 +V + + ++FL +++ G AD SYGI+V +L+G+P V++R+ ILK E L + Sbjct: 772 EVKEDGKNVVFLREIVKGGADKSYGIEVARLSGVPKEVLNRSNKILKKLETRKNLIENKI 831 Query: 848 K--DMRLY---YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 K M L+ + E +E LS+N+ +E +K ++L+ +SPL +L L +K Sbjct: 832 KAEQMILFGNGFEEENEEEETEILSENESKVLELLKNMDLNSLSPLESLLKLNELK 887 >gi|253733467|ref|ZP_04867632.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus TCH130] gi|253728521|gb|EES97250.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus TCH130] Length = 872 Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust. Identities = 318/916 (34%), Positives = 490/916 (53%), Gaps = 95/916 (10%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPMM+QY++IKS D L+F+R+GDFYE+F++DA ASR L ITLTKR I Sbjct: 1 MSNVTPMMQQYLKIKSEYQDCLLFFRLGDFYEMFYEDAKEASRVLEITLTKRDAKKENPI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A+ YI L+ G+++AICEQ+E P + K +VRR VVR+VTPGT+ E Sbjct: 61 PMCGVPYHSADSYIDTLVNNGYKVAICEQMEDP-----KQTKGMVRREVVRIVTPGTVME 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD-RLISDIMRIDPREIIFS 200 + +NY+++ + E A+++ D+STG K++ N + L+++I I+P E++ + Sbjct: 116 QGGVDDKQNNYILSFVMNQPEIALSYCDVSTGELKVTHFNDEATLLNEITTINPNEVVIN 175 Query: 201 EKELSH--------AEYKSLFETLGN--VAVAQPNVFFDHSI---SESRIADYYNITTVD 247 + H E ++ ETL + +V Q +H + + + DY + T Sbjct: 176 DNISDHLKRQINMVTETITVRETLSSEIYSVNQT----EHKLMYQATQLLLDYIHHTQK- 230 Query: 248 TFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS 307 S +E AAI Y+K +D A+ NLE+ ++ Sbjct: 231 --RDLSHIEDVVQYAAIDYMK-----------------------MDFYAKRNLELTESIR 265 Query: 308 -GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK 366 S++ +LL +D + T G R + I PL +I RLD ++ F + I + ++ Sbjct: 266 LKSKKGTLLWLMDETKTPMGARRLKQWIDRPLISKEQIEARLDIVDEFSAHFIERDTLRT 325 Query: 367 ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK 426 L D+ R + R+ G +D+ ++ I NI L N + + V +L+ Sbjct: 326 YLNQVYDIERLVGRVSYGNVNARDLIQLKHSISEIPNIKALL--NSMNQNTLVQVNQLEP 383 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 L L+ L L ++ P +DGG + G + LDE K +A LQ K + T Sbjct: 384 LDDLLD-ILEQSLVEEPPISVKDGGLFKVGFNTQLDEYLEASKNGKTWLAELQAKERQRT 442 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 IK+LKI N GYFIE+T ++ L+ S+ ++ +QT+SN RF T EL + E+ Sbjct: 443 GIKSLKISFNKVFGYFIEITRAN---LQNFEPSEFGYMRKQTLSNAERFITDELKEKEDI 499 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 I A + A+ +E + F L + + +E L +++I+ +D + A +A++ NY RP Sbjct: 500 ILGAEDKAIELEYQLFVQLREEVKKYTERLQQQAKIISELDCLQSFAEIAQKYNYTRPSF 559 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 + + + RHP+VE+ + ++ N+C L N ++L+TGPNM GKST+ Sbjct: 560 SENKTLELVESRHPVVERVM---DYNDYVPNNCRLD-----NETFIYLITGPNMSGKSTY 611 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ A+I IMAQMG+YVP A + I D++F+R+G+AD+L SG+STFMVEM+E L Sbjct: 612 MRQVAIISIMAQMGAYVPCKEAVLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTY 671 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT S +I DEIGRGT+T DGL++A A IEY+ ET+ + L +TH+HELT L ++L Sbjct: 672 ATEDSLIIFDEIGRGTSTYDGLALAQAMIEYVAETSHAKTLFSTHYHELTTLDQALPSLK 731 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE------ 840 N + ++ +IFLHKV G D SYGIQV KLA LP VISRA IL FE Sbjct: 732 NVHVAANEYKGELIFLHKVKDGAVDDSYGIQVAKLADLPEKVISRAQVILSEFEASAGKK 791 Query: 841 ------KLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVE----------------KIK 878 K+ N+ ++ + +E+ + LS+ D F + +IK Sbjct: 792 SSISNLKMV-ENEPEINQENSNVSVEETTDTLSQKD--FEQASFDLLENDQESEIELQIK 848 Query: 879 CLNLDEMSPLTALKTL 894 LNL M+P+ AL L Sbjct: 849 NLNLSNMTPIEALVKL 864 >gi|227538471|ref|ZP_03968520.1| DNA mismatch repair protein MutS [Sphingobacterium spiritivorum ATCC 33300] gi|227241657|gb|EEI91672.1| DNA mismatch repair protein MutS [Sphingobacterium spiritivorum ATCC 33300] Length = 869 Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust. Identities = 305/891 (34%), Positives = 492/891 (55%), Gaps = 55/891 (6%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TP+M+QY IK P +L+ +R+GDFYE F +DA+ A+ LGI LTKRG + Sbjct: 6 KKETPLMQQYNAIKVKYPGALLLFRVGDFYETFGEDAIKAAGILGIVLTKRGSGSESETA 65 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 + G P H+ Y+ KL++ G R+AIC+Q+E P + K++V+R V LVTPG D Sbjct: 66 LAGFPHHSLETYLPKLVRAGQRVAICDQLEDP-----KTTKTIVKRGVTELVTPGVSYSD 120 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK 202 ++ +NYL +V + +A++DISTG F ++ ++ + + P E+I ++K Sbjct: 121 NIVQQKSNNYLASVFFEKNSTGVAFLDISTGEFLVAQGSNSYIDKLLQGFKPTEVILAKK 180 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISE-SRIADY--------YNITTVDTFG-SF 252 + +K E G+ F+ +++ E DY + + ++ FG Sbjct: 181 Q-----FKEFTEHFGSQ-------FYTYTLDEWPYTGDYATETLLKHFEVNSMKGFGIER 228 Query: 253 SQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 V AA A+ Y+ +T+ N I R + +++D NLE++ + + Sbjct: 229 MPVGIIAAGVALHYLNETEHRNLQHISNISRIEEDRYMWLDRFTIRNLELIGS-ANENAV 287 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 +L +D++ + G RL I PL D I RL+ + F QN L + + + ++ Sbjct: 288 TLSDVLDHTASPMGARLLKRWIVMPLKDRVSIQERLNVVEHFHQNKSLRDELVQEIRQVG 347 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE 432 D+ R +S++ + + P++I ++ + + I L N E L+ E+L + Sbjct: 348 DLERLISKIGLLKANPREIMQLKRSLYA-IEKLKTLTGNADTESLKIISEQLNTCSLIRD 406 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 + M ++ P G + DG D+ LD R + K + +Q + AE T I +LK Sbjct: 407 RIEREMQAEP-PVALNKGNVMADGIDSELDRLRKIAFGGKDYLLEIQKREAELTGIPSLK 465 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 I NN GY++EVT++ KD + + +I +QT+ N R+ T EL + E +I A Sbjct: 466 IAFNNVFGYYLEVTNTH-----KD-KVPEGWIRKQTLVNAERYITEELKEYEEQILGAEE 519 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 +IE + L +AI E + + +Q++A +D+ + A++A++ Y +P I S Sbjct: 520 KIQVIENRLYAELLSAIAEYIKPVQLNAQLVAKLDVLLNFAVIAEKNFYVKPEISESKVL 579 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 +K GRHP++EK L + +I ND L D ++ ++ ++TGPNM GKS LRQ L Sbjct: 580 DIKGGRHPVIEKNLP--IGQDYITNDTFL----DNDAQQIIIITGPNMAGKSALLRQTGL 633 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 IV+MAQ+GS+VPA AHIG+VDK+F+RVG++DNL+SG STFMVEM ETASI+N +++S Sbjct: 634 IVLMAQIGSFVPAKTAHIGLVDKIFTRVGASDNLSSGESTFMVEMNETASIMNNLSDRSL 693 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATL 790 ++LDEIGRGT+T DG+SIAWA E+LH T R + L ATH+HEL +LS S+ R N + Sbjct: 694 ILLDEIGRGTSTYDGISIAWAIAEFLHNHPTARAKTLFATHYHELNELSTSMPRVKNFNV 753 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-- 848 V + N +IFL K++PG ++HS+GI V KLAG+P ++ RA +ILK E+ ++ Sbjct: 754 TVKEVNNKVIFLRKLVPGGSEHSFGIHVAKLAGMPPKLLGRANEILKRLEQERTGGEQIK 813 Query: 849 -DMRLYYPEIQTKESKNNLSKNDKLFVEKIK----CLNLDEMSPLTALKTL 894 MR +IQ + + + D +EKI+ L+++ ++P+ AL L Sbjct: 814 DSMR----KIQKQAYQLQMFAIDDPILEKIRDMLNNLDVNTLTPVEALMKL 860 >gi|188590144|ref|YP_001921070.1| DNA mismatch repair protein MutS [Clostridium botulinum E3 str. Alaska E43] gi|238689654|sp|B2V1M2|MUTS_CLOBA RecName: Full=DNA mismatch repair protein mutS gi|188500425|gb|ACD53561.1| DNA mismatch repair protein MutS [Clostridium botulinum E3 str. Alaska E43] Length = 941 Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust. Identities = 288/822 (35%), Positives = 474/822 (57%), Gaps = 34/822 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM +Y++ K D ++FYR+GDFYE+FFDDAL SR L + LT + L + PMCG Sbjct: 4 TPMMVEYMKTKEEYNDCILFYRLGDFYEMFFDDALTVSRELELVLTGKNCGLEERAPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H A YI +L+ G+++AICEQ+E P + +K +V+R VV+++TPGT + Sbjct: 64 IPHHAAAAYIPRLVTKGYKVAICEQLEDP-----KQSKGIVKRGVVKVITPGTFIDSNSN 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREIIFSEKE 203 D+ YLM ++ ++ IA DISTG FK ++ N+ + L+ +I ++ P+EI+ Sbjct: 119 LENDNTYLMVISEHEDKFGIAMSDISTGEFKTTSFNNIKMSLLDEISKVSPKEIL----- 173 Query: 204 LSHAEYKSLFETLGNV--AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 + + + L E + NV + F + +S+ + + ++ V ++ + Sbjct: 174 VDNNISEDLLEEINNVLPVLITKKDFNEFLVSKEELIEQFSDLEVSGLTIEREI---PSK 230 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 + YI +TQ ++ I E+ +I + + ID +R NLE+ ++ +++ SLL +D Sbjct: 231 VLLKYINETQKMSLTNINLLEQYEIINYMTIDGNSRRNLELTESIREKTKKGSLLWVLDK 290 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 S T GGR + I PL +I RL + + ++ LK D+ R + + Sbjct: 291 SATSMGGRTLRKWIDEPLIVKDEIEKRLSGVEEVFNSIGFNEDLRSALKEIYDIERIVGK 350 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + KD+ ++ + + + LK+ E L+G E L +L + L+ + Sbjct: 351 ISNKNVNAKDLLSLKSSL-DKLPCIKKLLKDTSSELLKGYYENLDELID-VRDLLNDSIK 408 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 +D ++G ++DG + +DE R + K IA+L+ + E T IK+LK+ +N G Sbjct: 409 EDPGLGLKEGNIIKDGYNNLVDELRQSKLHGKEWIAALENREREFTGIKSLKVGYNKVFG 468 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IE++ S+ + + + R+I +QT++N RF T EL +E++I + + +E Sbjct: 469 YYIEISKSNYNSI-----PEGRYIRKQTLANAERFITEELKVMEDKILGSEEKLINLEYS 523 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F + + I ++ L ++++I+ +D LA++A E +Y +P I+ + + DGRHP Sbjct: 524 IFVEIRDKIEKEISRLKKSARIISDLDGISTLALVALENDYIKPEINTNGLIKITDGRHP 583 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + + F++N+ L ++ +L L+TGPNM GKST++RQ ALI +MAQMG Sbjct: 584 VVEKVIGKGD---FVSNNTAL----NQTDKELLLITGPNMAGKSTYMRQVALITLMAQMG 636 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA+ A+I I DK+F+R+G++D+LA G+STFMVEM E ++IL AT+ S V+LDE+GR Sbjct: 637 SFVPATSANISICDKIFTRIGASDDLAGGKSTFMVEMWEVSNILKNATSNSLVLLDEVGR 696 Query: 741 GTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GT+T DGLSIAW+ IEY+ + RC+ L ATH+HEL L L N ++ V + Sbjct: 697 GTSTYDGLSIAWSVIEYITKNKNLRCKTLFATHYHELVKLEGILPGVKNYSVAVKKLKDS 756 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 ++FL K++ G AD SYGI+V KLAGLP VI+RA +IL+ E Sbjct: 757 VVFLRKIVEGGADESYGIEVAKLAGLPENVINRAREILEDLE 798 >gi|298207616|ref|YP_003715795.1| putative DNA mismatch repair protein MutS [Croceibacter atlanticus HTCC2559] gi|83850252|gb|EAP88120.1| putative DNA mismatch repair protein MutS [Croceibacter atlanticus HTCC2559] Length = 869 Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust. Identities = 299/885 (33%), Positives = 499/885 (56%), Gaps = 38/885 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TP+M+QY IK+ PD+L+ +R+GDFYE F +DA+ A+R L I LT R G+ Sbjct: 5 KKVTPLMQQYNSIKTKYPDALLLFRVGDFYETFGEDAVKAARILNIVLTNRNNG-GERTE 63 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 + G P H+ N Y+ KL+K G R+AIC+Q+E P + KS+V+R V LVTPG D Sbjct: 64 LAGFPHHSLNTYLPKLVKAGERVAICDQLEDP-----KATKSIVKRGVTELVTPGVALND 118 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK 202 ++L +N+L +V + + +A++D+STG F + + + + + P EI+ +++ Sbjct: 119 EVLQSNSNNFLASVYIGKKQMGVAFLDVSTGEFLTAQGSSEYIDKLLQNFAPSEILIAKQ 178 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK--TAA 260 + A++ ++F + + + VF E+ + ++ + ++ FG +E A+ Sbjct: 179 K--KADFTAIFGSDFHTFYIEDWVFKTDYAHET-LHQHFGVKSLKGFG-VDHLEDGIIAS 234 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS--LLKTI 318 A + Y+ +TQ I R + +++D NLE+ + G+ QS LL I Sbjct: 235 GAILYYLSETQHHKLKHITSISRIAEDAYVWMDRFTIRNLELYQ---GTSLQSVTLLDVI 291 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D + + GGR +A PL ++ KI R +N+F++ L++ + +K D+ R + Sbjct: 292 DKTTSPMGGRTLKRWLALPLKNAEKIKKRHRVVNYFLKQKTLLSDVTSHIKQIGDIERLI 351 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 S++ + P+++ +++ + + + I L LK++ + L+ + L+ L ++ Sbjct: 352 SKVATAKVSPREVIQLKNSLDAIVPIKTLALKSE-NDALKVIGDNLQSC-DLLRGKITET 409 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 L+++ P G + G LDE R +R K + + + E T I +LKI NN Sbjct: 410 LNEEAPVNILKGSTIARGFSKELDELRDIRFSGKEYLDKMLQRETEATGITSLKIASNNV 469 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IEV +S KD + + ++ +QT+ N R+ T EL + E +I A + IE Sbjct: 470 FGYYIEVRNSH-----KD-KVPENWVRKQTLVNAERYITEELKEYEAKILGAEEKIVQIE 523 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 E F L I + + + + +I ID A A ++NYC P I + + +GR Sbjct: 524 QELFSKLVTWISDYIKPVQQNAHLIGEIDCLCGFATQAMQENYCLPEITEDYSLEITEGR 583 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP++EK L +P+I ND L +++ ++ ++TGPNM GKS LRQ ALIV++AQ Sbjct: 584 HPVIEKQLPL--GEPYITNDILL----NRDDQQMIMITGPNMSGKSAILRQTALIVLLAQ 637 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 MGS+VPA A IG+VDK+F+RVG++DN++ G STFMVEM ETASILN +++S V+LDEI Sbjct: 638 MGSFVPAKAAKIGLVDKIFTRVGASDNISMGESTFMVEMNETASILNNLSDRSLVLLDEI 697 Query: 739 GRGTATLDGLSIAWATIEYLHE-TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 GRGT+T DG+SIAWA EYLHE + + L ATH+HEL +++++ +R N + V + + Sbjct: 698 GRGTSTYDGISIAWAISEYLHEHPAKAKTLFATHYHELNEMTETFERIKNYNVSVKELKD 757 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 ++FL K++PG ++HS+GI V K+AG+P V+ RA ILK EK H+ +++ + Sbjct: 758 NVLFLRKLVPGGSEHSFGIHVAKMAGMPQQVLHRANKILKKLEK--SHSSEELSGQIKKA 815 Query: 858 QTKESKNNLSKNDKLFVEKIK----CLNLDEMSPLTALKTLYAVK 898 +E + + K D +E IK ++++ ++P+ AL L +K Sbjct: 816 TEQEPQLSFFKLDDPLLEDIKQEIIQVDINTLTPVEALMKLNEIK 860 >gi|152979852|ref|YP_001352979.1| DNA mismatch repair protein MutS [Janthinobacterium sp. Marseille] gi|189083179|sp|A6SXI2|MUTS_JANMA RecName: Full=DNA mismatch repair protein mutS gi|151279929|gb|ABR88339.1| DNA mismatch repair protein [Janthinobacterium sp. Marseille] Length = 882 Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust. Identities = 317/903 (35%), Positives = 468/903 (51%), Gaps = 59/903 (6%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E + TPMM+QY+ IK+ P +LVFYRMGDFYELFFDDA ASR LGITLT+RG G Sbjct: 10 EGNEKHTPMMQQYLRIKAEYPTTLVFYRMGDFYELFFDDAEKASRLLGITLTQRGASNGN 69 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 I M GVP H + Y+ KL+K+G IAICEQI P +K V R V+R++TPGTL Sbjct: 70 PIKMAGVPFHAVDQYLSKLVKLGESIAICEQIGDPAT-----SKGPVERKVLRVITPGTL 124 Query: 140 TEDQLLSPTDSNYLMAV----ARIRTEWAIAWIDISTGIFKI-----STSNHD-RLISDI 189 T+ LL L+A+ R +AW+ +++G+ K+ N D RL ++ Sbjct: 125 TDSDLLPEKSEQPLLALYSTTQRKTATIGLAWLSMASGVLKLMEFATDAQNADVRLKHEL 184 Query: 190 MRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTF 249 RI P EI+ S + S F N V P+ FD + + + N+ T+ F Sbjct: 185 ERIAPAEILLPG---SVNDLFSEFSLAKNTTV--PDWHFDIAHGTKALYEQLNVGTLTGF 239 Query: 250 GSFS-QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG 308 G+ + AA A + Y + TQ + E + +D+A R NLE+ T+ G Sbjct: 240 GAENLSAAIGAAGALLRYAQSTQGKGLQHVRTLTVETENEFIGLDAATRRNLELTETIRG 299 Query: 309 --SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK 366 + +L +D+ T G RL + D + R +IN ++ + + Sbjct: 300 QDANAATLFSLLDHCRTAMGSRLLRHWLHHARRDQSVAMARHAAINALMRADA-CSGLAS 358 Query: 367 ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI------RSGINILNLFLKNDLPEELRGA 420 L S PDV R +R+ + P+D+A +R G+ R+ +++ N D L Sbjct: 359 TLASVPDVERITTRIALLSARPRDLAGMRGGLQQLPSLRAYVSMCN----KDADAPLLKT 414 Query: 421 VEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 + P + ++ + RDGG + G DA LDE R L + + + + L+ Sbjct: 415 IHDALATPSDCLDLVERAIAMEPAAMVRDGGVIARGFDAELDELRGLSENAGQFLIDLET 474 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 + T I NL++++N G++IEVT + D + RQT+ N R+ T EL Sbjct: 475 RERARTGINNLRVEYNKVHGFYIEVTHGQTDKVPDD------YRRRQTLKNAERYITPEL 528 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 E++ +A AL E +E + + + +L N + +A +D +ALA A N Sbjct: 529 KAFEDKALSAQERALAREKYLYEQVLQQMTQHIATLQNIAHALAQLDTLVALAEHALRHN 588 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 +C P + + ++ GRHP+VE +++ FIANDC LS + KL L+TGPNM Sbjct: 589 WCAPQLVSEPTITIEQGRHPVVENHIER-----FIANDCLLS-----SECKLLLITGPNM 638 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GGKST++RQ ALI ++A +GS+VPAS A IG +D++F+R+G+AD+LA GRSTFMVEM E+ Sbjct: 639 GGKSTYMRQVALITLLAYVGSFVPASSAVIGPIDRIFTRIGAADDLAGGRSTFMVEMTES 698 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 A+ILN AT S V++DE+GRGT+T DGL++AWA ++L + + L ATH+ ELT L + Sbjct: 699 AAILNGATENSLVLMDEVGRGTSTFDGLALAWAIAKHLIDNTKSFTLFATHYFELTQLPE 758 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 N L + + I+FLH V G A SYG+QV +LAG+P VI A L E Sbjct: 759 IHPTAANVHLSAVEHKDSIVFLHAVQAGPASQSYGLQVAQLAGVPQPVIRAARKHLALLE 818 Query: 841 KLYHHNQKDMRLYY-----PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 L+ +++ S D E I +N D +SP AL LY Sbjct: 819 ANSMQATPQFDLFAGGGSPTTVESAAEPQQASAVD----EAIAAINPDALSPREALDALY 874 Query: 896 AVK 898 +K Sbjct: 875 RLK 877 >gi|251778099|ref|ZP_04821019.1| DNA mismatch repair protein MutS [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082414|gb|EES48304.1| DNA mismatch repair protein MutS [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 941 Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust. Identities = 289/822 (35%), Positives = 472/822 (57%), Gaps = 34/822 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM +Y++ K D ++FYR+GDFYE+FFDDAL SR L + LT + L + PMCG Sbjct: 4 TPMMVEYMKTKEEYNDCILFYRLGDFYEMFFDDALTVSRELELVLTGKNCGLEERAPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H A YI +L+ G+++AICEQ+E P + +K +V+R VV+++TPGT + Sbjct: 64 IPHHAAAAYIPRLVTKGYKVAICEQLEDP-----KQSKGIVKRGVVKVITPGTFIDSNSN 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREIIFSEKE 203 D+ YLM ++ ++ IA DISTG FK ++ N+ + L+ +I ++ P+EI+ Sbjct: 119 LENDNTYLMVISEHEDKFGIAMSDISTGEFKTTSFNNIKMSLLDEISKVSPKEIL----- 173 Query: 204 LSHAEYKSLFETLGNV--AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 + + + L E + NV + F + +S+ + + ++ V ++ + Sbjct: 174 VDNNISEDLLEEINNVLPVLITKKDFNEFLVSKEELIEQFSDLEVSGLTIEREI---PSK 230 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 + YI +TQ ++ I E+ +I + + ID +R NLE+ ++ +++ SLL ID Sbjct: 231 VLLKYINETQKMSLTNINLLEQYEIINYMTIDGNSRRNLELTESIREKTKKGSLLWVIDK 290 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 S T GGR + I PL +I RL + + ++ LK D+ R + + Sbjct: 291 SATSMGGRTLRKWIDEPLIVKDEIEKRLSGVEEVFNSIGFNEDLRSALKEIYDIERIVGK 350 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + KD+ ++ + + + LK+ E L+G E L +L + L+ + Sbjct: 351 ISNKNVNAKDLLSLKSSL-DKLPCIKELLKDTSSELLKGYYENLDELID-VRDLLNDSIK 408 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 +D ++G ++DG + +DE R + K IA+L+ + E T IK+LK+ +N G Sbjct: 409 EDPGLGIKEGNIIKDGYNNLVDELRQSKLHGKEWIAALENREREFTGIKSLKVGYNKVFG 468 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IE++ S+ + + + R+I +QT++N RF T EL +E++I + + +E Sbjct: 469 YYIEISKSNYNSI-----PEGRYIRKQTLANAERFITEELKVMEDKILGSEEKLINLEYS 523 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F + + I ++ L ++++I+ +D LA++A E +Y +P I+ + DGRHP Sbjct: 524 IFVEIRDKIEKEISRLKKSARIISDLDGISTLALVALENDYIKPEINTDGLIKITDGRHP 583 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + + F++N+ L ++ +L L+TGPNM GKST++RQ ALI +MAQMG Sbjct: 584 VVEKVIGKGD---FVSNNTAL----NQTDKELLLITGPNMAGKSTYMRQVALITLMAQMG 636 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA+ A+I I DK+F+R+G++D+LA G+STFMVEM E ++IL AT+ S V+LDE+GR Sbjct: 637 SFVPATSANISICDKIFTRIGASDDLAGGKSTFMVEMWEVSNILKNATSNSLVLLDEVGR 696 Query: 741 GTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GT+T DGLSIAW+ IEY+ + RC+ L ATH+HEL L L N ++ V + Sbjct: 697 GTSTYDGLSIAWSVIEYITKNKDLRCKTLFATHYHELVKLEGILPGVKNYSVAVKKLKDS 756 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 ++FL K++ G AD SYGI+V KLAGLP VI+RA +IL E Sbjct: 757 VVFLRKIVEGGADESYGIEVAKLAGLPENVINRAREILDDLE 798 >gi|227326559|ref|ZP_03830583.1| DNA mismatch repair protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 840 Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust. Identities = 302/878 (34%), Positives = 476/878 (54%), Gaps = 48/878 (5%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY +K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IPM GVP Sbjct: 1 MMQQYFRLKAEHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H +Y+ +L+++G +AICEQI P +K V R VVR+VTPGT++++ LL Sbjct: 61 HHAVENYLARLVQMGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTISDEALLQE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKELSH 206 N L A+ + + A +DIS+G F++S ++ + + +++ R +P E+++ E Sbjct: 116 KQDNLLAAIWQDGRGFGYATLDISSGRFRVSEPADRETMAAELQRTNPAELLYPES---- 171 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAIS 265 E L E + +P F+ + ++ + + FG +++ AA + Sbjct: 172 FESMDLIENRHGLR-RRPLWEFEPDTARQQLNLQFGTRDLTGFGVEQAKLALRAAGCLLQ 230 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y K TQ + P I E Q + +D+A R NLE+ + LSG E +L +D ++T Sbjct: 231 YAKDTQRTSLPHIRGITMERQQDGIIMDAATRRNLELTQNLSGGVENTLAAVLDCTVTAM 290 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINP-IQKILKSSPDVPRSLSRLKIG 384 G R+ I P D + R +I+ +Q+ I P +Q L+ D+ R L+RL + Sbjct: 291 GSRMLKRWIHMPSRDIEALKQRQQAISA-LQD---IAPDLQPSLRQVGDLERILARLALR 346 Query: 385 RGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 P+D+A +R + +I L D L + + +L LE+ + + Sbjct: 347 TARPRDLARMRHAFQQFPDIREQLAPLDTDSVRRLVSLIGQFDELRDLLERAVV----EA 402 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P RDGG + G A LDE R+L D + + L+++ E+ + LK+ N GY+ Sbjct: 403 PPVLVRDGGVIAPGYHAELDEWRALADGASDYLDRLEIREREKLGLDTLKVGFNGVHGYY 462 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 I+V+ + ++ ++ RQT+ N R+ EL + E+++ + AL +E + Sbjct: 463 IQVSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKALY 516 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 + L + ++ L ++ +A +D+ LA A NY P + + + + GRHP+V Sbjct: 517 DELFDLLLPHLAELQQSAAALAELDVLTNLAERADTLNYVCPTLSDKSGIKITGGRHPVV 576 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 E+ L++ PFI+N L+ ++ ++TGPNMGGKST++RQ ALIV+MA +G + Sbjct: 577 EQVLRE----PFISNPLSLAPQR-----RMLIITGPNMGGKSTYMRQAALIVLMAHIGCF 627 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA A IG VD++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V++DEIGRGT Sbjct: 628 VPADQAVIGPVDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVLMDEIGRGT 687 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFL 802 +T DGLS+AWA E L + L ATH+ ELT L + ++ N L + + I F+ Sbjct: 688 STYDGLSLAWACAENLANRIKAMTLFATHYFELTTLPEKMEGVVNVHLDAREHGDTIAFM 747 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKES 862 H V G A SYG+ V LAG+P VI RA LK E L ++ + Sbjct: 748 HSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLKELETLSNNASSS--------HIDGA 799 Query: 863 KNNLSKNDK--LFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L ND+ +E ++ ++ D ++P AL LY +K Sbjct: 800 QLALLSNDEPSPAIEALEAIDPDALTPRQALDWLYQLK 837 >gi|219944611|gb|ACL55047.1| MutS [Salmonella enterica subsp. enterica serovar Heidelberg] Length = 851 Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust. Identities = 307/902 (34%), Positives = 485/902 (53%), Gaps = 77/902 (8%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 +++ + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG Sbjct: 5 FDKDFSNHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASA 64 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G+ IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPG Sbjct: 65 GEPIPMAGIPHHAVENYLAKLVNQGESVAICEQIGDPATSK-----GPVERKVVRIVTPG 119 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPRE 196 T++++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E Sbjct: 120 TISDEALLQERQDNLLAAIWQDGKGYGYATLDISSGRFRLSEPADRETMAAELQRTNPAE 179 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 ++++E AE +L E + ++ I +R T D G F VE Sbjct: 180 LLYAE---DFAEM-ALIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VE 230 Query: 257 KT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 AA + Y+K TQ + P I E Q ++ +D+A R NLEI + L+G E Sbjct: 231 NASRGLCAAGCLLQYVKDTQRTSLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGVE 290 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 +L +D ++T G R+ + P+ ++ + R +I ++ +Q +L+ Sbjct: 291 NTLAAVLDCTVTPMGSRMLKRWLHMPVRNTDILRERQQTIGALQDT---VSELQPVLRQV 347 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP-QS 430 D+ R L+RL P+D+A +R + LPE L +E + P Q+ Sbjct: 348 GDLERILARL----ARPRDLARMRHAFQQ------------LPE-LHAQLETVDSAPVQA 390 Query: 431 LEKT----------LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 L K L + D P RDGG + G LDE R+L D + + L++ Sbjct: 391 LRKKMGDFAELRDLLERAIIDAPPVLVRDGGVIAPGYHEELDEWRALADGATDYLDRLEI 450 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 + E T + LK+ +N GY+I+++ + + + ++ RQT+ N R+ EL Sbjct: 451 RERERTGLDTLKVGYNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPEL 504 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 + E+++ + AL +E + ++ L + ++ L ++ +A +D+ + LA A N Sbjct: 505 KEYEDKVLTSKGKALALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLAERAWTLN 564 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 Y P + + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNM Sbjct: 565 YTCPTFTDKPGIRITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNM 615 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GGKST++RQ ALI ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ET Sbjct: 616 GGKSTYMRQTALIALLAYIGSYVPAQNVEIGPIDRIFTRVGAADDLASGRSTFMVEMTET 675 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 A+IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + Sbjct: 676 ANILHNATENSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPE 735 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 ++ N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E Sbjct: 736 KMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELE 795 Query: 841 KLYHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAV 897 + + Q D T+ S + VE ++ L+ D ++P AL+ +Y + Sbjct: 796 SISPNAAATQVD--------GTQMSLLAAPEETSPAVEALENLDPDSLTPRQALEWIYRL 847 Query: 898 KA 899 K+ Sbjct: 848 KS 849 >gi|296158971|ref|ZP_06841799.1| DNA mismatch repair protein MutS [Burkholderia sp. Ch1-1] gi|295890846|gb|EFG70636.1| DNA mismatch repair protein MutS [Burkholderia sp. Ch1-1] Length = 894 Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust. Identities = 305/906 (33%), Positives = 465/906 (51%), Gaps = 65/906 (7%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 ++ TPMM+QY+ IK+ +P +LVFYRMGDFYELFF+DA A+R L +TLT+RG G Sbjct: 10 DVAQHTPMMQQYLRIKAEHPGTLVFYRMGDFYELFFEDAEKAARLLDLTLTQRGASAGNP 69 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 I M GVP H Y+ KL+K+G +AICEQI P +K V R VVR+VTPGTLT Sbjct: 70 IKMAGVPHHAVEQYLAKLVKLGESVAICEQIGDPAT-----SKGPVERKVVRVVTPGTLT 124 Query: 141 EDQLLSPTDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDP 194 + LLS YL+A+ + T +AW+++++G +++ D++ + + RI P Sbjct: 125 DAALLSDKSDVYLLAMCVAHNRRGVATSVGLAWLNLASGALRLAELAPDQVAAALERIRP 184 Query: 195 REIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS- 253 EI+ ++ A + V P FD + R+ D + +D FG+ S Sbjct: 185 AEILVADTPGDSASWTPPVNAGALTRV--PVWHFDITSGTQRLCDQLEVAGLDGFGAHSL 242 Query: 254 -----QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG 308 AA + ++ + V + Y E E I +D A R NLE+ TL G Sbjct: 243 TCACGAAGALLLYAAATQGQQLRHVRSLKVEY-ESEYIG----LDPATRRNLELTETLRG 297 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP--ILINPIQK 366 + +L +D T G RL + P +S R +I + P ++ ++ Sbjct: 298 TESPTLCSLLDTCCTTMGSRLLRHWLHHPPRESAVAQARQQAIGALLDAPPGAGVDALRG 357 Query: 367 ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK 426 L+ D+ R RL + P+D++ +RD + + + ++ + Sbjct: 358 ALRQISDIERITGRLALLSARPRDLSSLRDTFIALPELRTQLAAVSPNADSLARIDASLE 417 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 PQ+ + L ++++ RDGG + G DA LDE R + + + + L+ + T Sbjct: 418 PPQACVELLRRAVAEEPSAMVRDGGVIARGYDAELDELRDISENCGQFLIDLETRERART 477 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 I NL++++N G++IEVT + D + RQT+ N R+ T EL E++ Sbjct: 478 GIGNLRVEYNKVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTFEDK 531 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 +A AL E ++ L A++ + +A +D+ A A+ ++ P Sbjct: 532 ALSAQERALARERSLYDALLQALLPFIPDCQRVASALAELDLLAAFGERARALDWVAPTF 591 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 + ++ GRHP+VE ++Q FIANDC L+ KL L+TGPNMGGKSTF Sbjct: 592 SPNAGIEIEQGRHPVVEAQVEQ-----FIANDCALT-----PERKLLLITGPNMGGKSTF 641 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ ALI ++A +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+ILN Sbjct: 642 MRQTALIALLAYVGSYVPARRAAFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILND 701 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT QS V++DEIGRGT+T DGL++AWA +L N C L ATH+ ELT L + Sbjct: 702 ATPQSLVLMDEIGRGTSTFDGLALAWAIARHLLAHNGCHTLFATHYFELTQLPAEFPQAA 761 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN 846 N L + GI+FLH V G A+ SYG+QV +LAG+PN VI A + L H Sbjct: 762 NVHLSAVEHGHGIVFLHAVSEGPANQSYGLQVAQLAGVPNAVIRAAR------KHLAHLE 815 Query: 847 QKDMRLYYPEI---------------QTKESKNNLSKNDKL--FVEKIKCLNLDEMSPLT 889 Q+ P++ +ESK + + VE+++ ++ +++ P Sbjct: 816 QQSAAQPAPQLDLFAAPMPMLLEDADDERESKAEAAVPPAMQALVERLRGIDPNDLRPRE 875 Query: 890 ALKTLY 895 AL LY Sbjct: 876 ALDLLY 881 >gi|332526706|ref|ZP_08402808.1| DNA mismatch repair protein MutS [Rubrivivax benzoatilyticus JA2] gi|332111109|gb|EGJ11141.1| DNA mismatch repair protein MutS [Rubrivivax benzoatilyticus JA2] Length = 844 Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust. Identities = 299/885 (33%), Positives = 469/885 (52%), Gaps = 57/885 (6%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY+ IK+ PD+LVFYRMGDFYELF+DDA A+R L ITLT RG+ G+ + M GVP Sbjct: 1 MMVQYLRIKAEFPDTLVFYRMGDFYELFYDDARKANRLLDITLTTRGQSAGEPVVMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 VH+ + Y+ +L+K+G +AI EQ+ + K V R VVR+VTPGT+T+ +LL+ Sbjct: 61 VHSVDAYLARLLKLGEAVAIAEQV-----GEVGAAKGPVERKVVRVVTPGTVTDSELLAE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHA 207 L+AV R R W +AW+ +++G ++ + L + R+ P E++ Sbjct: 116 RADTLLLAVHRQRNTWGLAWLGLASGELGLTECSERELAGWLARLQPAELLHD----GSG 171 Query: 208 EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAAAAAISY 266 E + A+P F+ ++ E ++ + + T+ FG+ +V AAAA +S+ Sbjct: 172 ELPAALAQAPCARTARPAWQFESALGERKLREQLQVATLAGFGAQELKVAHAAAAALLSF 231 Query: 267 IKKTQ---MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 + TQ + + ++ P ++ + + A NLE+++TL G +LL +D T Sbjct: 232 AEHTQGRALAHLRSVAVPRSSEL---IELPPATHRNLELVQTLRGEDSPTLLSLLDTCRT 288 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G G R + P D ++ R ++I + P++ L+ DV R +R+ + Sbjct: 289 GMGSRRLRHWLTHPQRDRSEARARHEAIACLLDQGY--EPLRDALRGVSDVERITARIAL 346 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS------- 436 + P++++ G+R+ +L L LR AV L + L+ Sbjct: 347 RQVRPRELS----GLRA--TLLGL-------PALRTAVPAGAPLLAEFDAALAPDDGIAN 393 Query: 437 --SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 S ++++ RDGG + G DA LDE R++ + L+ + T I NL+++ Sbjct: 394 VLSAIAEEPAVMLRDGGVIAAGVDAELDELRAISQNCDAFLLDLESRERARTGIGNLRVQ 453 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N G++IEVTSS + D + RQT+ N R+ T EL E++ +A A Sbjct: 454 FNKVHGFYIEVTSSGRDKVPAD------YQRRQTLKNAERYITPELKAFEDKALSAQERA 507 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L E +E + +A+ L ++ +A +D LA A +CRP + Sbjct: 508 LAREKWIYEQVLDALQPLLPPLTALARALASLDALATLAERAAALGWCRPEFVPYPCIEI 567 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 + GRHP+VE L++ + PFIAN C L +L ++TGPNMGGKSTF+RQ ALIV Sbjct: 568 EAGRHPVVEARLRETGAGPFIANHCRLDAKT-----RLLVITGPNMGGKSTFMRQVALIV 622 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++A MGSYVPAS +G VD + +R+G+AD+LA+ +STFM+EM E A+I++ AT S V+ Sbjct: 623 LLAAMGSYVPASACRLGPVDAIHTRIGAADDLANAQSTFMLEMTEAAAIVHTATEHSLVL 682 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGL++A A LH+ NR L ATH+ ELT+ +R N + + Sbjct: 683 MDEIGRGTSTFDGLALAAAIATQLHDRNRSFTLFATHYFELTEFPAEHERALNLHVGAVE 742 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 S I+FLH++ PG A SYG+QV +LAG+P TVI +A L+ E + L+ Sbjct: 743 SGHDIVFLHQIEPGPASRSYGVQVARLAGMPATVIRQARATLEALEAKAQAGHAQVDLFA 802 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 P + + + + ++ D ++P AL LY +KA Sbjct: 803 PPPAAAAPEPSAVEA------ALAAIDPDRLAPREALDALYRLKA 841 >gi|329963688|ref|ZP_08301134.1| DNA mismatch repair protein MutS [Bacteroides fluxus YIT 12057] gi|328527698|gb|EGF54690.1| DNA mismatch repair protein MutS [Bacteroides fluxus YIT 12057] Length = 863 Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust. Identities = 286/823 (34%), Positives = 462/823 (56%), Gaps = 40/823 (4%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+Q++++K+ +PD+++ +R GDFYE + DA++A+ LGITLTKR GK I M G P Sbjct: 1 MMKQFLDLKAKHPDAVMLFRCGDFYETYSTDAIVAAEILGITLTKRANGKGKTIEMAGFP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H + Y+ KLI+ G R+AIC+Q+E P KK LV+R + LVTPG D +L+ Sbjct: 61 HHALDTYLPKLIRAGKRVAICDQLEDPKLTKK-----LVKRGITELVTPGVSINDNILNY 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHA 207 ++N+L AV + +A++DISTG F + D + + P+E++F + Sbjct: 116 RENNFLAAVHFGKGACGVAFLDISTGEFLTAEGPFDYVDKLLNNFAPKEVLFERGK---- 171 Query: 208 EYKSLFE-TLGN--VAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK-----TA 259 + +FE GN + F + + ++ ++ + + FG VE A Sbjct: 172 --RLMFEGNFGNKFFTFELDDWVFTETTAREKLLKHFEVKNLKGFG----VEHLKNGIIA 225 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 + A + Y+ TQ I R + + +D +LE++ +++ SLL ID Sbjct: 226 SGAVLQYLIMTQHTQIGHITSLARIEEDKYVRLDKFTVRSLELMGSMNDGG-SSLLNVID 284 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 +I+ G RL + PL D IN RL+ + +F + P I++ L D+ R +S Sbjct: 285 KTISPMGARLLKRWLVFPLKDVQPINERLNVVEYFFRQPGFKELIEEQLHLIGDLERIIS 344 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 ++ +GR P+++ ++ +++ I + D L E+L + QS+ + + Sbjct: 345 KVAVGRVSPREVVALKVALQAIGPIKEACMGAD-NASLNHIGEQLN-ICQSIRDRIDREI 402 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 ++D P GG ++ G +A LDE R + K + +Q + +E T I +LKI +NN Sbjct: 403 NNDPPLLVNKGGVIKPGVNAELDELRQIAYSGKDYLLKVQQRESELTGIPSLKIGYNNVF 462 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IEV + + ++ +I +QT+ N R+ T EL + E +I A + L++E Sbjct: 463 GYYIEVRNVHKEKVPQE------WIRKQTLVNAERYITQELKEYEEKILGAEDKILILET 516 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 + + L A+ E ++ + IA +D ++ A A+E NY RP+I + ++ GRH Sbjct: 517 QLYTELVQALNEFIPAIQMNANQIARLDCLLSFATAARENNYIRPVIADDDVLDIRQGRH 576 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P++EK L + ++AND L D S ++ ++TGPNM GKS LRQ ALI ++AQ+ Sbjct: 577 PVIEKQLP--IGEKYVANDVML----DSGSQQVIIITGPNMAGKSALLRQTALITLLAQI 630 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPA AHIG+VDK+F+RVG++DN++ G STFMVEM E A ILN + +S V+ DE+G Sbjct: 631 GSFVPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNLSPRSLVLFDELG 690 Query: 740 RGTATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 RGT+T DG+SIAWA +E++HE + R L ATH+HEL ++ KS KR N + V + + Sbjct: 691 RGTSTYDGISIAWAIVEHIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEVDN 750 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 +IFL K+ G ++HS+GI V KLAG+P +++ RA +IL E Sbjct: 751 KVIFLRKLERGGSEHSFGIHVAKLAGMPKSIVKRADEILHQLE 793 >gi|189030768|sp|Q13X51|MUTS_BURXL RecName: Full=DNA mismatch repair protein mutS Length = 894 Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust. Identities = 304/900 (33%), Positives = 464/900 (51%), Gaps = 53/900 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 ++ TPMM+QY+ IK+ +P +LVFYRMGDFYELFF+DA A+R L +TLT+RG G Sbjct: 10 DVAQHTPMMQQYLRIKAEHPGTLVFYRMGDFYELFFEDAEKAARLLDLTLTQRGASAGNP 69 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 I M GVP H Y+ KL+K+G +AICEQI P +K V R VVR+VTPGTLT Sbjct: 70 IKMAGVPHHAVEQYLAKLVKLGESVAICEQIGDPAT-----SKGPVERKVVRVVTPGTLT 124 Query: 141 EDQLLSPTDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDP 194 + LLS + YL+A+ + T +AW+++++G +++ D++ + + RI P Sbjct: 125 DAALLSDKNDVYLLAMCVAHNRRGVATSVGLAWLNLASGALRLAELAPDQVAAALERIRP 184 Query: 195 REIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS- 253 E++ ++ A + V P FD + R+ D + +D FG+ S Sbjct: 185 AEVLVADTPGDAASWTPPVNAGALTRV--PVWHFDIASGTQRLCDQLEVAGLDGFGAHSL 242 Query: 254 -----QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG 308 AA + ++ + V + Y E E I +D A R NLE+ TL G Sbjct: 243 TCAWGAAGALLLYAAATQGQQLRHVRSLKVEY-ESEYIG----LDPATRRNLELTETLRG 297 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP--ILINPIQK 366 + +L +D T G RL + P +S R +I ++ P ++ ++ Sbjct: 298 TESPTLCSLLDTCCTTMGSRLLRHWLHHPPRESAVAQARQQAIGALLEAPPGAGVDSLRG 357 Query: 367 ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK 426 L+ D+ R RL + P+D++ +RD + + + ++ + Sbjct: 358 ALRQISDIERITGRLALLSARPRDLSSLRDTFIALPELRAQLAAVSPNADSLARIDASLE 417 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 PQ+ + L ++++ RDGG + G DA LDE R + + + + L+ + T Sbjct: 418 PPQACVELLRRAVAEEPSAMVRDGGVIARGYDAELDELRDISENCGQFLIDLETRERART 477 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 I NL++++N G++IEVT + D + RQT+ N R+ T EL E++ Sbjct: 478 GIGNLRVEYNKVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTFEDK 531 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 +A AL E ++ L A++ + +A +D+ A A+ ++ P Sbjct: 532 ALSAQERALARERSLYDALLQALLPFIPDCQRVASALAELDLLAAFGERARALDWVAPTF 591 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 ++ GRHP+VE ++Q FIANDC L+ KL L+TGPNMGGKSTF Sbjct: 592 SPDAGIEIEQGRHPVVEAQVEQ-----FIANDCSLT-----PERKLLLITGPNMGGKSTF 641 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ ALI ++A +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+ILN Sbjct: 642 MRQTALIALLAYVGSYVPARRAAFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILND 701 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT QS V++DEIGRGT+T DGL++AWA +L N C L ATH+ ELT L + Sbjct: 702 ATPQSLVLMDEIGRGTSTFDGLALAWAIARHLLAHNGCHTLFATHYFELTQLPAEFPQAA 761 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL-YHH 845 N L + GI+FLH V G A+ SYG+QV +LAG+PN VI A L E+ Sbjct: 762 NVHLSAVEHGHGIVFLHAVSEGPANQSYGLQVAQLAGVPNAVIRAARKHLAYLEQQSAAQ 821 Query: 846 NQKDMRLY---YPEIQTKESKNNLSKNDKL-------FVEKIKCLNLDEMSPLTALKTLY 895 + L+ P + SK + L VE+++ ++ +++ P AL LY Sbjct: 822 PAPQLDLFAAPMPMLLEDADDERDSKAEALVPPAMQALVERLRGIDPNDLRPREALDLLY 881 >gi|254671276|emb|CBA08590.1| DNA mismatch repair protein MutS [Neisseria meningitidis alpha153] Length = 864 Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust. Identities = 304/889 (34%), Positives = 474/889 (53%), Gaps = 54/889 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM+QY+ IK+ + D LVFYRMGDFYE+FFDDA+ A++ L ITLT RG+ G+ + M G Sbjct: 7 SPMMQQYLGIKAQHTDKLVFYRMGDFYEMFFDDAVEAAKLLDITLTTRGQVDGEPVKMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ +L+K+G +AICEQ+ + K V R VVR+VTPGTLT+ LL Sbjct: 67 VPFHAAEQYLARLVKLGKSVAICEQV-----GEVGAGKGPVERKVVRIVTPGTLTDSALL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 ++N ++AV+ + +AW + +G FK + D+L ++ R+ EI+ + Sbjct: 122 EDKETNRIVAVSPDKKYIGLAWASLQSGEFKTKLTTVDKLDDELARLQAAEILLPDS--- 178 Query: 206 HAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQ---VEKTAAA 261 K+ + V + N + F E + +Y+ + FG + V AA Sbjct: 179 ----KNAPQLQTASGVTRLNAWQFAADAGEKLLTEYFGCQDLRGFGLDGKEHAVAIGAAG 234 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 A ++YI+ TQ + + E + +D+A R NLEI +TLSG + +L+ T+D Sbjct: 235 ALLNYIRLTQNLMPQHLDGLSLETDSQYIGMDAATRRNLEITQTLSGKKSPTLMSTLDLC 294 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G RL A + PL + I R +++ P+Q LKS D+ R +R+ Sbjct: 295 ATHMGSRLLALWLHHPLRNRAHIRARQEAVAALESQ---YKPLQCRLKSIADIERIAARI 351 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL-PQSLE--KTLSSM 438 +G P+D+A +RD + + I +L E + LK + P++L + L Sbjct: 352 AVGNARPRDLAALRDSLFALSEI-------ELSAECSSLLGTLKAVFPENLSTAEQLRQA 404 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + + + +DG + G LDE R +++ + L+ K E T + LK++ N Sbjct: 405 ILPEPSVWLKDGNVINHGFHPELDELRRIQNHGDEFLLDLEAKERERTGLSTLKVEFNRV 464 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 G++IE++ + A D + RQT+ N RF T EL E+++ A AL +E Sbjct: 465 HGFYIELSKTQAEQAPAD------YQRRQTLKNAERFITPELKAFEDKVLTAQEQALALE 518 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F+ + + L A++ A +D+ + LAKE+N+ RP + +++GR Sbjct: 519 KQLFDGVLKNLQTALPQLQKAAKAAAALDVLSTFSALAKERNFVRPEFADYPVIHIENGR 578 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ ++ F AN DL + +L LLTGPNMGGKST++RQ ALIV++A Sbjct: 579 HPVVEQQVRH-----FTANHTDLD-----HKHRLMLLTGPNMGGKSTYMRQVALIVLLAH 628 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 G +VPA A IG +D++F+R+G++D+LAS RSTFMVEM ETA IL+ AT QS V++DE+ Sbjct: 629 TGCFVPADAATIGPIDQIFTRIGASDDLASNRSTFMVEMSETAYILHHATEQSLVLMDEV 688 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGL++A A E+L + N+ L ATH+ ELT L ++ N L + + Sbjct: 689 GRGTSTFDGLALAHAVAEHLLQKNKSFSLFATHYFELTYLPEAHAAAVNMHLSALEQGQD 748 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY---- 854 I+FLH++ PG A SYGI V KLAGLP + A L E N+ + ++ Sbjct: 749 IVFLHQIQPGPAGKSYGIAVAKLAGLPVRALKSAQKHLNGLENQAAANRPQLDIFSTMPS 808 Query: 855 -----PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P + K + + ++ L+ D ++P AL LY +K Sbjct: 809 EKGDEPNVGNFVDKAEEKHFEGILAAALEKLDPDSLTPREALSELYRLK 857 >gi|218961253|ref|YP_001741028.1| DNA mismatch repair protein [Candidatus Cloacamonas acidaminovorans] gi|167729910|emb|CAO80822.1| DNA mismatch repair protein [Candidatus Cloacamonas acidaminovorans] Length = 876 Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust. Identities = 312/892 (34%), Positives = 492/892 (55%), Gaps = 48/892 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY +K +PD L+ +RMGDFYE FF+DA ASR L ITLT R K+ +P+ G Sbjct: 7 TPMLKQYYAVKEKHPDKLILFRMGDFYETFFEDAHTASRILNITLTTRNKNDENPVPLAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H N Y+ KLIK G +IAICEQ E P +A LV+R V ++TPG + + L Sbjct: 67 FPYHALNTYLDKLIKAGLKIAICEQTEDPKKAI-----GLVKREVTEIITPGAVLDQSFL 121 Query: 146 SPTDSNYLMAVAR--IRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 + +L ++ + + +A +DISTG F + +++ L++++ R E+I + Sbjct: 122 EGNANVFLASLYYNDPQKKIGLAHLDISTGDFLFTELDNEELVNELQRFRAAELIVDSTQ 181 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 ETL + V + F + + + ++ +TT++ +G+ +++ AA A Sbjct: 182 AEEYVKTLPLETLPTITVFD-SWQFQPQEAIATLKKHFGVTTLEPYGAHNKLLGATAAGA 240 Query: 264 IS-YIKKTQMVNKP--TIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQSLLKTID 319 Y++ + N P I + + +D +R NLE++R++ G++ SLL ID Sbjct: 241 ALAYVQG--LYNTPFNHISSLRYYSLSQYMQLDEISRRNLELVRSIRYGTKYGSLLSVID 298 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 ++T G RL + + PL D +I R D I FI + ++ ILK D+ R ++ Sbjct: 299 QTMTPMGSRLLQQWLLHPLLDIKEITFRQDIIQSFIDKSSHLKELRLILKEIGDITRLVT 358 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE-----ELRGAVEKLKKLPQSLEKT 434 RL R P+++ ++ + S N+ + P+ + G+ E + L +EK Sbjct: 359 RLGSLRINPRELIALKSYLYSARNLQTKLSTFEHPQFAVWQQNMGSFEDIIAL---IEKA 415 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 ++ D+ P +GG G + LDE + K IA L+ +T I NLK+ Sbjct: 416 IN----DNPPISITEGGIFAKGYNPELDELMDIIYDGKSWIARLEEDERRKTGINNLKVG 471 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+IEV+S++ + + D +I +QT++N RF + L + E ++ ++ Sbjct: 472 YNRVFGYYIEVSSANKN------KVPDYYIPKQTLTNSERFISPRLKEFEAKVLSSEEKI 525 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 +E E F+ L + E S+VIA +D+ +LA LA + Y RP+ S + Sbjct: 526 KNLEYELFKELRQNLAESLPRFQQLSEVIAELDVLSSLAFLAWQNQYSRPVFTESRELHI 585 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 DGRHP++EK ++ S FI ND L P + ++TGPNM GKST+LRQ L+V Sbjct: 586 IDGRHPVIEKLME---SDKFIPNDTHLDYP----ETSIAIITGPNMAGKSTYLRQVGLLV 638 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 I+AQMGS+VPAS + + D++F+RVG++DNLA G+STF+VEMIETA+IL+ AT+ S ++ Sbjct: 639 ILAQMGSFVPASKMTLPVFDRVFTRVGASDNLAQGQSTFLVEMIETANILHSATSNSLIL 698 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDEIGRGT+T DGLS+AWA IEY+ + L ATH+HELT+L N + V Sbjct: 699 LDEIGRGTSTFDGLSLAWAIIEYIQKYKHSLTLFATHYHELTELENLYPDIKNYNVAVKQ 758 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK-------LYHHNQ 847 NE +IF+ K+ G AD SYGIQV +LAG+P VI RA +ILK E+ L + Sbjct: 759 WNEEMIFIRKIERGGADQSYGIQVARLAGIPEKVIRRAKEILKNLEEHEISPQGLTATIR 818 Query: 848 KDMRLYYPEIQTKES-KNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 K + P+I E + S+ND + + +IK ++L+++SP+ A + L ++ Sbjct: 819 KKLVRDVPQIDIFEILADKASENDPI-INEIKEIDLNKLSPIEAFQYLQKIQ 869 >gi|282881060|ref|ZP_06289748.1| DNA mismatch repair protein MutS [Prevotella timonensis CRIS 5C-B1] gi|281305067|gb|EFA97139.1| DNA mismatch repair protein MutS [Prevotella timonensis CRIS 5C-B1] Length = 887 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 299/907 (32%), Positives = 497/907 (54%), Gaps = 62/907 (6%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKD 80 K TPMM+Q+ +K +PD+L+ +R GDFYE + DDA+ SR LGITLTKR G + G + Sbjct: 6 KGLTPMMKQFFSMKRQHPDALLLFRCGDFYETYGDDAIEGSRILGITLTKRNNGGNSG-E 64 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKK--RGNKSL------VRRNVVR 132 M G P H + Y+ KLI+ G R+AIC+Q+E P + ++ +G K L V+R + Sbjct: 65 TAMAGFPHHALDTYLPKLIRAGKRVAICDQLEDPKKKREELKGKKGLSATDKMVKRGITE 124 Query: 133 LVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRI 192 LVTPG D +L+ ++N+L AV + ++++DISTG F +D + + Sbjct: 125 LVTPGVAMGDNVLNYKENNFLAAVHFGKAACGVSFLDISTGEFLTGEGTYDYVEKLLGSF 184 Query: 193 DPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSF 252 P+E+++ + + + + F T V + VF + S + R+ ++ ++ FG Sbjct: 185 APKEVLYDRNDKRN--FDTHFGTKYCVFELEDWVFTEQS-ARQRLLKHFGTKSLKGFGVE 241 Query: 253 SQVEKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSR 310 A+ AI Y++ TQ N I R + + + +D +LE++ T+ G R Sbjct: 242 HMKSGIVASGAILQYLEITQHTNIGHITSLARIEEERYVRLDKFTIHSLELIDTMQEGGR 301 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 SLL ID +IT GGR+ + PL D T I RLD +++F + P + + + Sbjct: 302 --SLLNIIDKTITPMGGRMLRRWMVFPLKDVTPIQQRLDVVDYFFKAPDFRQLVGEQFQR 359 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS 430 D+ R +S++ +GR P+++ +++ +++ + +K E LR E+L+ L ++ Sbjct: 360 IGDLERIISKVAVGRVSPREVVQLKNALQALQPVKAACMKAS-NESLRRIGEQLQ-LCET 417 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 + + + D P GG + DG D LDE R + K + +Q + E T I + Sbjct: 418 IRDRIEHEIQPDPPLLVNKGGVIADGYDTELDELRQISRNGKDYLIQIQEREVERTGIAS 477 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ +NN GY++EV + + KD + + ++ +QT++ R+ T EL E +I A Sbjct: 478 LKVGYNNVFGYYLEVRN-----MYKD-KVPENWVRKQTLAQAERYITEELKAYEEKILGA 531 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 +++E + F L + + + +IA +D + A +A+E Y RP ID + Sbjct: 532 DERIMMLEDKLFRELIVDMQPYIPQIQLDANLIAHLDCLLGFAQVAEENQYVRPQIDATD 591 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 +K GRHP++E L + ++ ND L D ++ ++TGPNM GKS LRQ Sbjct: 592 VLDIKQGRHPVIEMQLP--LGETYVPNDIYL----DAEKQQIMMITGPNMAGKSALLRQT 645 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALIV++AQ+G +VPA A IG+VDK+F+RVG++DN++ G STFMVEM E A+ILN TN+ Sbjct: 646 ALIVLLAQIGCFVPAESAKIGLVDKIFTRVGASDNISLGESTFMVEMTEAANILNNVTNR 705 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRG--LLATHFHELTDLSKSLKRFHNA 788 S V+ DE+GRGT+T DG+SIAWA +EYLHE R R L ATH+HEL ++ K R +N Sbjct: 706 SLVLFDELGRGTSTYDGISIAWAIVEYLHEQPRARARTLFATHYHELNEMEKHFPRINNY 765 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE-------- 840 + V +++ +IF+ K+ G ++HS+GI V ++AG+P +++ R+ +IL+ E Sbjct: 766 NVSVKEADGKVIFMRKLERGGSEHSFGIHVAEIAGMPRSIVKRSNEILRQLESDNSQVGS 825 Query: 841 ------KLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVE---KIKCLNLDEMSPLTAL 891 K N++ M+L + ++ +D + + +I L+++ ++P+ AL Sbjct: 826 VGKPNLKHLEENREGMQLSFFQL-----------DDPVLCQVRDEILGLDINNLTPMEAL 874 Query: 892 KTLYAVK 898 L +K Sbjct: 875 NKLNEIK 881 >gi|300718092|ref|YP_003742895.1| DNA mismatch repair protein [Erwinia billingiae Eb661] gi|299063928|emb|CAX61048.1| DNA mismatch repair protein [Erwinia billingiae Eb661] Length = 853 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 308/889 (34%), Positives = 486/889 (54%), Gaps = 51/889 (5%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 ++++L TPMM+QY+ +K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG Sbjct: 5 IDKDLSGHTPMMQQYLRLKADHPEILLFYRMGDFYELFYDDAKRASQLLEISLTKRGASA 64 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G+ IPM GVP H +Y+ KL+++G +AICEQI P +KS V R VVR+VTPG Sbjct: 65 GEPIPMAGVPYHAVENYLAKLVQLGESVAICEQIGDPAL-----SKSPVERKVVRIVTPG 119 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPRE 196 T++++ LL N L A+ + + A +DIS+G F+++ ++ + + +++ R +P E Sbjct: 120 TISDEALLHERQDNLLAAIWQSPRGFGFATLDISSGRFRLAEPTDLETMAAELTRSNPAE 179 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 +++SE SL E + +P F+ + ++ + + FG VE Sbjct: 180 LLYSED----FSAMSLIENRRGLR-RRPLWEFEVDTARQQLNMQFGTRDLSGFG----VE 230 Query: 257 KT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 + AA + Y+K TQ + P I E Q + +D+A R NLEI + L+G E Sbjct: 231 QAHHALRAAGCLLQYVKDTQRTSLPHIRSLTMERQQDGIIMDAATRRNLEITQNLAGGIE 290 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 +L +D ++T G R+ + P+ + + R SI ++P+ L+ Sbjct: 291 NTLAAVLDKTVTPMGSRMLKRWLHMPVREIKTLENRQQSIGALQDFTAELSPL---LRQV 347 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQ 429 D+ R L+RL + P+D+A +R + + L + P + LR + + +L Sbjct: 348 GDLERILARLALRTARPRDLARMRHAFQQLPQLDALLAEVATPHLQTLRTQMGQFDELRD 407 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 LE+ + + P RDGG + G A LDE R+L D + + L+++ E+ + Sbjct: 408 LLERAVI----ESPPVLIRDGGVIAPGYHAELDEWRALADGATDYLDKLEIREREKLGLD 463 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LK+ N GY+I+V+ + + + ++ RQT+ N+ R+ EL + E+++ Sbjct: 464 TLKVGFNAVHGYYIQVSRGQSHRVPIN------YVRRQTLKNVERYIIPELKEYEDKVLT 517 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 + AL +E +E L + ++ E+L ++ +A +D+ LA A NY P + + Sbjct: 518 SKGKALALEKGLYEQLFDLLLPHLEALQLSAAALAELDVLSNLAERAWTLNYNCPTLTDK 577 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 + RHP+VE+ LK+ PFIAN LS ++ ++TGPNMGGKST++RQ Sbjct: 578 PGIKLTGARHPVVEQVLKE----PFIANPLSLSPQR-----RMLVITGPNMGGKSTYMRQ 628 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI ++A +GSYVPA A IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT Sbjct: 629 AALITLLAYIGSYVPAEQAVIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATE 688 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N Sbjct: 689 HSLVLMDEIGRGTSTYDGLSLAWACAESLANRIKAMTLFATHYFELTTLPEKMEGVANVH 748 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 L + + I F+H V G A SYG+ V LAG+P VI RA LK E L + Sbjct: 749 LDAVEHGDTIAFMHSVQEGAASKSYGLAVAALAGVPKEVIKRARQKLKELETL-SGSAAS 807 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + P++ L + VE ++ L+ D ++P AL +Y +K Sbjct: 808 SKADGPQLPL------LVEETSPAVEALEALDADSLTPRQALDWIYRLK 850 >gi|282932640|ref|ZP_06338054.1| DNA mismatch repair protein MutS [Lactobacillus jensenii 208-1] gi|281303214|gb|EFA95402.1| DNA mismatch repair protein MutS [Lactobacillus jensenii 208-1] Length = 860 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 304/892 (34%), Positives = 492/892 (55%), Gaps = 53/892 (5%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + +TPMM+QY +IKS PD+ +FYR+GDFYELF DDA+ ++ L +TLT R I Sbjct: 1 MAETTPMMKQYYDIKSQYPDAFLFYRVGDFYELFEDDAVKGAQILELTLTHRSNKSENPI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PM GVP + Y+ L++ G+++A+CEQ+E P +AK +V+R +++LVTPGT+ Sbjct: 61 PMAGVPHQAVDSYVNTLVEKGYKVALCEQLEDPKQAK-----GMVKRGIIQLVTPGTMMN 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFS 200 + +SNYL +V ++ + +A+ D+STG IF + ++++++ + +E++F Sbjct: 116 EGPNGAKESNYLTSVFSTKSGFGLAYSDLSTGEIFTTHLKSFADVLNELLSLRTKEVVF- 174 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 E LS ++ L ++ N+ V+ P E Y I + +Q EK A Sbjct: 175 EGSLSDSQKDVLKKS--NITVSTP-----IQDQEKHAEVSYAIQKLS-----NQAEKDAT 222 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 + Y+ TQ + + + ++ L + ++NLE++ + +G + SL +D Sbjct: 223 KQLVIYLLVTQKRSLAHLQIAKSYEVSQYLQMSHVVQNNLELVASAKTGKKMGSLFWLLD 282 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T GGRL + +A PL ++I R + + N ++ LK D+ R Sbjct: 283 KTNTAMGGRLLKQWLARPLLSISEIEKRQKIVQAMLDNYFTREGVKDALKGVYDLERLTG 342 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILN-LFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 R+ G +++ + + + I + LF D E+L E++ L + L K + Sbjct: 343 RIAFGSANARELLQLSRSLDAIPQIQSALFESGD--EDLANFAEQIIDLSE-LAKKIKDT 399 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + ++ P DGG +R+G + LD R + K +A LQ + + T I+NLKI +N Sbjct: 400 IVENPPILTTDGGLIREGINEQLDRYRDAMNNGKTWLAQLQAQERKATGIENLKIGYNKV 459 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GYFI+V+ + + + + R+I +QT++ R+ T EL + EN I A N + +E Sbjct: 460 FGYFIQVSKGNVAKV-----PEGRYIRKQTLTGSERYITPELKEHENLILEAENKSTDLE 514 Query: 559 LESFEILSNAI---IEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI-V 614 + F L I I + + L NA IA +D + A +A+E NYCRP + I V Sbjct: 515 YQIFSDLREYIKTFIPKLQELGNA---IASLDALTSFATVAEENNYCRPSFHQDSQEIKV 571 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 GRHP+VEK L S +I ND ++ + ++L+TGPNM GKST++RQ ALI Sbjct: 572 VAGRHPVVEKVLADGS---YIPNDIQMA-----DDTSVFLITGPNMSGKSTYMRQMALIA 623 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 +MAQ+GS+VPA+ A + I D++F+R+G+AD+L SG+STFMVEM E L AT +S V+ Sbjct: 624 VMAQVGSFVPATEAALPIFDQIFTRIGAADDLISGQSTFMVEMSEANEALQNATKRSLVL 683 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 DEIGRGTAT DG+++A A ++YLH+ + L ATH+HELTD+ K+L N + + Sbjct: 684 FDEIGRGTATYDGMALAGAIVKYLHDKVGAKTLFATHYHELTDMEKTLDHLKNIHVGATQ 743 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK----DM 850 N +IFLHK++PG AD SYGI V +LAGLPN V+ A +LK E + + + Sbjct: 744 ENGNLIFLHKILPGPADQSYGIHVAQLAGLPNKVLREASKMLKRLEAQGANGLEPASLQL 803 Query: 851 RLYYPEIQTKESKNN--LSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAW 900 L+ + ++E+ ++ +S +K +E I L L + +PL ++ V +W Sbjct: 804 DLFNEKNDSEETTSDEAISDTEKQVIEDINNLYLADKTPLEVMQL---VASW 852 >gi|262383129|ref|ZP_06076266.1| DNA mismatch repair protein MutS [Bacteroides sp. 2_1_33B] gi|262296007|gb|EEY83938.1| DNA mismatch repair protein MutS [Bacteroides sp. 2_1_33B] Length = 870 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 293/892 (32%), Positives = 486/892 (54%), Gaps = 53/892 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M+QY +IK+ +PD+++ +R+GDFYE++ +DA++ + LGI TKR +G+ + M G Sbjct: 7 TPLMKQYFDIKAKHPDAILLFRVGDFYEMYGEDAVIGAEILGIVQTKRANGVGQHVEMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KL++ G R+AIC+Q+E P KK LV+R + LVTPG D +L Sbjct: 67 FPHHALDSYLPKLVRAGKRVAICDQLEDPKLTKK-----LVKRGITELVTPGVSINDNIL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 + ++N+L ++ + I+++DISTG F + + D + + P+E++ + Sbjct: 122 NHKENNFLASIHFAKEVCGISFLDISTGEFMTAEGSIDYIDKLLNNFSPKEVL-----IE 176 Query: 206 HAEYKSLFETLGNVAVAQPNVF--------FDHSISESRIADYYNITTVDTFG-SFSQVE 256 K E G P F F S +E R+ ++ + FG ++ Sbjct: 177 RGNKKRFEEAFG------PRFFIFELDDWIFTTSAAEDRLLKHFETKNLKGFGVQHLKLG 230 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 A+ A + Y+ +TQ + I R + + +D +LE++ T++ SLL Sbjct: 231 IIASGAILYYLDQTQHTHISHITALSRIEEDRYVRLDKFTVRSLELVGTMN-DEGTSLLD 289 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 ID +I+ G R+ I PL D I R + +++F + P + L+ D+ R Sbjct: 290 VIDKTISPMGSRMLRRWILFPLKDVKPIQERQEVVDYFFREPETKELLDTQLEQIGDLER 349 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 +S++ +GR P+++ ++ +R+ I + ++ P R E+L + + + Sbjct: 350 IISKVAVGRVSPREVVQLKVALRAIEPIKEACMASEEPSLCRIG-EQLN-VCALIRDRIE 407 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 +++D P+ GG + G + LD+ R++ K + +Q + E T I +LKI N Sbjct: 408 KEINNDPPSLVNKGGIIAKGVNEELDDLRAIAYSGKDYLLKVQQREIELTGIPSLKIAFN 467 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 N GY+IEV ++ + + +I +QT+ N R+ T EL + E +I A L Sbjct: 468 NVFGYYIEVRNTHKDKVPAN------WIRKQTLVNAERYITEELKEYEEKILGAEEKILA 521 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E F L A+ E + + +I ID ++ A A+ Y RP++ +S +K Sbjct: 522 LETRLFNELVLALTEYIPPIQMNANLIGRIDCLLSFAKAAEANKYIRPVVSDSDKIDIKG 581 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP++EK L +P+IAND L D ++ ++TGPNM GKS LRQ ALI +M Sbjct: 582 GRHPVIEKQLPL--GEPYIANDVYL----DDEKQQIIIITGPNMAGKSALLRQTALITLM 635 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+G +VPA AHIGIVDK+F+RVG++DN++ G STFMVEM E + ILN T++S V+ D Sbjct: 636 AQIGCFVPAESAHIGIVDKIFTRVGASDNISVGESTFMVEMNEASDILNNMTSRSLVLFD 695 Query: 737 EIGRGTATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 E+GRGT+T DG+SIAWA +EY+HE + + L ATH+HEL ++ ++ KR N + V + Sbjct: 696 ELGRGTSTYDGISIAWAIVEYIHEHPNAKAKTLFATHYHELNEMERAFKRIKNYNVSVKE 755 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 +IFL K+IPG ++HS+GI V K+AG+P +++ R+ +ILK E N+++ Sbjct: 756 VGNKVIFLRKLIPGGSEHSFGIHVAKMAGMPKSIVKRSNEILKQLES---ENRQEGITGK 812 Query: 855 P--EIQTKESKNNLS---KNDKLFVE---KIKCLNLDEMSPLTALKTLYAVK 898 P I + LS +D + + +IK L+++ ++PL AL L +K Sbjct: 813 PVKAIASAAEGYQLSFFQLDDPVLSQVRDEIKNLDVNNLTPLEALNKLSEIK 864 >gi|257870587|ref|ZP_05650240.1| DNA mismatch repair protein mutS [Enterococcus gallinarum EG2] gi|257804751|gb|EEV33573.1| DNA mismatch repair protein mutS [Enterococcus gallinarum EG2] Length = 850 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 289/876 (32%), Positives = 487/876 (55%), Gaps = 39/876 (4%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM QY+ IK+ D+ +FYR+GDFYELF +DA+ A++ L +TLT R K+ + IPMC Sbjct: 9 NTPMMEQYLSIKAQYQDAFLFYRLGDFYELFNEDAIKAAQILELTLTSRNKNAEEPIPMC 68 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H A++YI LI+ G+++AICEQ+E P + K +V+R VV+L+TPGT+ + + Sbjct: 69 GVPYHAASNYIDTLIEQGYKVAICEQVEDP-----KTTKGMVKREVVQLITPGTVMDSKG 123 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 LS D+N+L AV + ++ A+ D+STG K + + D ++++ + +E++ + Sbjct: 124 LSAKDNNFLTAVMKTTQGYSFAYADLSTGELKTALLEDEDAVLNEAAALQTKEVVLCSE- 182 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + ++L + + +V F + A++ +T+ + EKT Sbjct: 183 --------VPDSLKELLTTRLSVVFSKQETYEENAEFRFLTS-----GLPEDEKTVTGKL 229 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 +SY+ TQ + I +L +D ++ NLE+ R++ +G + +LL +D + Sbjct: 230 LSYLAITQKRSLAHIQQAVEYQPDHSLKMDYYSKFNLELSRSIRTGQKHGTLLWLLDETK 289 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G RL + + PL KI R + + + + +Q L D+ R + R+ Sbjct: 290 TAMGARLLKQWLDRPLIQPKKIFARQEMVQSLLDSFFERADLQDALTKVYDMERLVGRVA 349 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 G +D+ ++ ++ + ++ +K E + +L+ L + L + S + +D Sbjct: 350 FGNVNGRDLLQLKSSLQQ-VPLIAQLIKGINRGEWNDLLIELEPLDE-LVALIDSAIDED 407 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P +G ++DG LD+ R K+ +A L+ K +ET IKNLK+ N GY+ Sbjct: 408 APLQITEGNVIKDGFHEQLDKYREAMRNGKQWLAELEAKERQETGIKNLKVGFNRVFGYY 467 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IE+T ++ + L++ R+ +QT++N RF + EL LE I A ++ +E + F Sbjct: 468 IEITKANLAGLEEG-----RYERKQTLANAERFISPELKKLETVILEAEEKSVDLEYQLF 522 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 + + + L ++ I+ +D+ + A +A+ Y RP++ + + DGRHP+V Sbjct: 523 LEVREEVKKSILRLQKLAKAISAVDVLQSFATIAERYQYVRPVLKKERSLNIVDGRHPVV 582 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 EK L Q +I N + D + L+TGPNM GKST++RQ AL+VIMAQ+G + Sbjct: 583 EKVLGHQE---YIPNSIVMHEDTD-----ILLITGPNMSGKSTYMRQLALLVIMAQIGCF 634 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA A + I D++F+R+G++D+L +G+STFMVEM+E L AT S ++ DE+GRGT Sbjct: 635 VPAQSAEMPIFDRIFTRIGASDDLIAGQSTFMVEMMEANQALRHATPNSLILFDELGRGT 694 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFL 802 AT DG+++A A IEY+H+ + + L +TH+HELT L + L R N + + + ++FL Sbjct: 695 ATYDGMALAQAIIEYIHKEVKAKTLFSTHYHELTILDEELLRLRNIHVGAVEKDGEVVFL 754 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKES 862 HK++ G AD SYGI V K+AGLP+ ++ RA ILK E+ H + E Q Sbjct: 755 HKMMEGPADKSYGIHVAKIAGLPSGLLQRAATILKALEE---HEPTIEKPVIEETQQLSL 811 Query: 863 KNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + +S + ++++K LNL EM+P+ AL LY ++ Sbjct: 812 FSEVSTEEVGVIDQLKKLNLLEMTPMDALNKLYELQ 847 >gi|320537296|ref|ZP_08037252.1| DNA mismatch repair protein MutS [Treponema phagedenis F0421] gi|320145866|gb|EFW37526.1| DNA mismatch repair protein MutS [Treponema phagedenis F0421] Length = 882 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 327/906 (36%), Positives = 495/906 (54%), Gaps = 81/906 (8%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY EIK+ + D+++F+R+GDFYE+F +DA+ S+ L +TLT+RGK+ PMCG Sbjct: 6 TPMMRQYQEIKAEHRDAVLFFRLGDFYEMFNEDAIEISKLLNLTLTQRGKN-----PMCG 60 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H A YI +L++ G +IAICEQ+ +P+ + L +R VV ++TPGT ED L Sbjct: 61 IPYHAAKIYIARLLRAGKKIAICEQVSNPVPGE------LTKRRVVEIITPGTAVEDDFL 114 Query: 146 SPTDSNYLMAV----ARIRTEWAI------AWIDISTGIFKIST----SNHDRLISDIMR 191 +NYL AV + RTE A A+ID+STG F ++ D ++ + Sbjct: 115 EQGKANYLAAVYCTPKKYRTEKAFDFYIGFAYIDVSTGYFFATSFPLSEFADNFKKEMGK 174 Query: 192 IDPREIIFSEK------ELSH--AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNI 243 I P+EI+ + EL + AEY +F+ L P+ ++ +E R+ + Sbjct: 175 IQPKEILIQQSLPQEIPELKNICAEYPDMFQNL------YPDWSYNPKTAEKRLCMCFGT 228 Query: 244 TTVDTFG-SFSQVEKTAAAAAISYIKKTQMVNKPTIG----YPEREDIQSTLFIDSAARS 298 + F + E A + Y+++T + Y E + + +D + R Sbjct: 229 ENLKAFSLTVDSPEVPPAGLLLEYLEQTSGAPLSHVTGISVYGENDFVT----MDDSTRK 284 Query: 299 NLEILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQN 357 NLEIL+ + G+ S+ +T+ Y+ T G RL R+ PL D +I RL+ + +N Sbjct: 285 NLEILQNIRDGTSAYSVFETLSYTKTSMGARLLRYRLHRPLRDKAEIQKRLEKTDVLYKN 344 Query: 358 PILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL-------FLK 410 N +Q+ L D+ R RL + R KD+ ++ + + I++ + FLK Sbjct: 345 QRAFNRVQEYLSDIFDIERLAGRLAMERAHAKDLLALKQSLNACISLNRISAEESLFFLK 404 Query: 411 NDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQ 470 E V+KL +L LE +S+L D F +G ++ G LDE +R+ Sbjct: 405 LSDSE-----VQKLIELFTLLE---NSILEDCSIIFT-EGKLIKRGFSEKLDELYDMRNN 455 Query: 471 SKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLES-KDRFIHRQTM 529 + I+ L+ E T I NLKIK+N LGYF+EVT K +L+S D FI R+++ Sbjct: 456 ATSILEQYLLEEQEATGIHNLKIKYNRMLGYFLEVT-------KGNLKSVPDHFIRRRSL 508 Query: 530 SNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDIS 589 +N RFTT +L+D+E ++ N + + E + F + + I +++ L + IA +D+ Sbjct: 509 ANADRFTTDKLVDIETKLNNVDENIIACERDIFFEIRSRINKENLFLRKLAAEIAELDVF 568 Query: 590 IALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNS 649 + A A + +P + + GRHP+VEK L + FI ND LS +D + Sbjct: 569 QSFAQAASIHGWVKPSFVDDGQLEIIAGRHPVVEKHL---PAGEFIPNDLHLSSESDSSL 625 Query: 650 GKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASG 709 L+TGPNM GKST+LRQ ALIV+ AQ+GS+VPA A I VD +F RVG++DNLA G Sbjct: 626 PSFALITGPNMAGKSTYLRQTALIVLFAQIGSFVPAEKAVITPVDCIFCRVGASDNLARG 685 Query: 710 RSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLA 769 STF+VEM ETA IL AT +S VI+DE+GRGT+T DGLSIA A EYL + L A Sbjct: 686 ESTFLVEMTETAYILRSATQKSLVIMDEVGRGTSTEDGLSIARAVSEYLLNKIGAKTLFA 745 Query: 770 THFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVI 829 TH+HEL+ L R N L V ++ E I+FL KVI G++++SYGI V +LAG+P +V+ Sbjct: 746 THYHELSYLEHP--RLKNFCLDVLETEEKIVFLKKVIEGVSNNSYGIHVARLAGVPESVL 803 Query: 830 SRAYDILKTFEKLYHHN-QKDM--RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMS 886 +RA +L F K + N D+ + +E+ N L + + + +I LN D ++ Sbjct: 804 ARAQTLLDLFAKTKNQNTTADIISPAAFENHSPRENSNTLFSEEDMIINEIISLNPDSIT 863 Query: 887 PLTALK 892 PL AL+ Sbjct: 864 PLEALQ 869 >gi|88191733|pdb|1WBD|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme Muts, E38q Mutant, In Complex With A G.T Mismatch gi|88191734|pdb|1WBD|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme Muts, E38q Mutant, In Complex With A G.T Mismatch Length = 800 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 300/840 (35%), Positives = 458/840 (54%), Gaps = 62/840 (7%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+ +K+ +P+ L+FYRMGDFY+LF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLRLKAQHPEILLFYRMGDFYQLFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEG---RRGLRRRPLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAGLQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFIDKPGIRITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 740 EGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 799 >gi|76789534|ref|YP_328620.1| DNA mismatch repair protein [Chlamydia trachomatis A/HAR-13] gi|237803222|ref|YP_002888416.1| DNA mismatch repair protein MutS [Chlamydia trachomatis B/Jali20/OT] gi|92087044|sp|Q3KKQ0|MUTS_CHLTA RecName: Full=DNA mismatch repair protein mutS gi|76168064|gb|AAX51072.1| MutS [Chlamydia trachomatis A/HAR-13] gi|231274456|emb|CAX11251.1| DNA mismatch repair protein [Chlamydia trachomatis B/Jali20/OT] Length = 820 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 299/828 (36%), Positives = 468/828 (56%), Gaps = 43/828 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+Q+ + K D L+ +R+G+FYE FFDDAL+ ++ L ITLT+R +++PM G Sbjct: 6 TPMMQQWHQCKEQAGDCLLLFRLGEFYEAFFDDALILAQNLDITLTQR-----QNVPMSG 60 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P + Y+ +L+ G ++AI EQ ++ G+K LV R + RL+TPG L LL Sbjct: 61 IPATCLDGYVDRLVSRGFKVAIAEQADN-----TEGSKGLVPRTINRLITPGALLSSSLL 115 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREIIFSEKEL 204 +NY++A+ ++ + + ++ +D+S G F ++ ++ + LI I R+ P E+ L Sbjct: 116 PEKANNYVLAINQVGSLYGLSCLDLSIGTFLVAEYDNTKDLIEAICRLAPTEL------L 169 Query: 205 SHAEY--------KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 SHA++ K L + L + F++ + ++ + ++++D FG V Sbjct: 170 SHAKFYQKNEAVIKQLQQHLRITLSEYVSWAFEYQSATKKLYTCFQVSSLDGFGLQGLVP 229 Query: 257 K-TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS-REQSL 314 AA A +SYI+ ++ + P+ Q L ID A+++NLE+L + G R+ SL Sbjct: 230 AINAAGALLSYIQDKLLLPISHLSIPKIYGQQKHLLIDKASQTNLELLSPIHGEHRKGSL 289 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L+ ++ + T GGRL + +P D +I R DS+ FF+Q L +++ L D+ Sbjct: 290 LQVMERTSTPMGGRLLRNTLINPFYDLKEITLRQDSVEFFLQQADLRKILKRQLSCVRDL 349 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R +++ PKDI +RD + S +I + LPE L L SL KT Sbjct: 350 ERLATKISTSLATPKDIGTLRDSLLSCTHIADNLQNCALPEFLENKFLIAPPLC-SLIKT 408 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 LS+ L +LP +G + L R++++ SK I Q + ET IK LK+ Sbjct: 409 LSTELIQELPLKVSEGNIFANHYHPDLLRLRNIKENSKSWILEYQERIRNETGIKKLKVC 468 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 + LGY+IEV S+ A L K+ FI RQ+ + RFTT EL ++ + + + Sbjct: 469 YAQALGYYIEVASNLAPQLPKE------FIRRQSRLHAERFTTQELQQFQDEVFSVEDKL 522 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 +E + F+ L I+E + + S +A +D ++LA LA E +Y RP++D+S + Sbjct: 523 QTLETKLFKELCFYIVEHRDLILKLSTAVADLDYVVSLAELAAEYDYRRPLVDHSDALSI 582 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 G HP+ L + + FI ND + + + LLTGPNM GKST++RQ AL+V Sbjct: 583 TKGMHPVALTLLDKGT---FIPNDTVMHSAQTR----MILLTGPNMAGKSTYIRQIALLV 635 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMAQMGS++PA AHIGIVDK+F+R+G+ DNL+ G STFMVEM ETA+IL+ AT++S VI Sbjct: 636 IMAQMGSFIPARSAHIGIVDKIFTRIGAGDNLSKGMSTFMVEMAETANILHNATDRSLVI 695 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQV 792 LDEIGRGT+T DGL+IA A +E+L T+ + + L ATH+ ELT+L + N V Sbjct: 696 LDEIGRGTSTYDGLAIAQAVVEFLLFTDGKKAKTLFATHYKELTELEMHCQHVENFHAMV 755 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 +++ IF+++++ G + S+GI V KLAG P +V+SRA IL FE Sbjct: 756 KENSGQPIFMYEIVKGHSKKSFGIHVAKLAGFPLSVVSRAQQILHQFE 803 >gi|69248279|ref|ZP_00604703.1| MutS 1 protein [Enterococcus faecium DO] gi|257878801|ref|ZP_05658454.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,230,933] gi|257881439|ref|ZP_05661092.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,231,502] gi|257890660|ref|ZP_05670313.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,231,410] gi|261207074|ref|ZP_05921763.1| DNA mismatch repair protein MutS [Enterococcus faecium TC 6] gi|289565924|ref|ZP_06446364.1| DNA mismatch repair protein MutS [Enterococcus faecium D344SRF] gi|293563776|ref|ZP_06678215.1| DNA mismatch repair protein MutS [Enterococcus faecium E1162] gi|294614622|ref|ZP_06694526.1| DNA mismatch repair protein MutS [Enterococcus faecium E1636] gi|294621199|ref|ZP_06700384.1| DNA mismatch repair protein MutS [Enterococcus faecium U0317] gi|314938825|ref|ZP_07846096.1| DNA mismatch repair protein MutS [Enterococcus faecium TX0133a04] gi|314943631|ref|ZP_07850385.1| DNA mismatch repair protein MutS [Enterococcus faecium TX0133C] gi|314948710|ref|ZP_07852083.1| DNA mismatch repair protein MutS [Enterococcus faecium TX0082] gi|314952160|ref|ZP_07855178.1| DNA mismatch repair protein MutS [Enterococcus faecium TX0133A] gi|314991866|ref|ZP_07857323.1| DNA mismatch repair protein MutS [Enterococcus faecium TX0133B] gi|314996579|ref|ZP_07861614.1| DNA mismatch repair protein MutS [Enterococcus faecium TX0133a01] gi|35367172|gb|AAN85558.1| MutS [Enterococcus faecium] gi|35367177|gb|AAN85560.1| MutS [Enterococcus faecium] gi|68194464|gb|EAN08964.1| MutS 1 protein [Enterococcus faecium DO] gi|257813029|gb|EEV41787.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,230,933] gi|257817097|gb|EEV44425.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,231,502] gi|257827020|gb|EEV53646.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,231,410] gi|260078702|gb|EEW66404.1| DNA mismatch repair protein MutS [Enterococcus faecium TC 6] gi|289162297|gb|EFD10157.1| DNA mismatch repair protein MutS [Enterococcus faecium D344SRF] gi|291592524|gb|EFF24129.1| DNA mismatch repair protein MutS [Enterococcus faecium E1636] gi|291599195|gb|EFF30227.1| DNA mismatch repair protein MutS [Enterococcus faecium U0317] gi|291604257|gb|EFF33752.1| DNA mismatch repair protein MutS [Enterococcus faecium E1162] gi|313589268|gb|EFR68113.1| DNA mismatch repair protein MutS [Enterococcus faecium TX0133a01] gi|313593571|gb|EFR72416.1| DNA mismatch repair protein MutS [Enterococcus faecium TX0133B] gi|313595692|gb|EFR74537.1| DNA mismatch repair protein MutS [Enterococcus faecium TX0133A] gi|313597668|gb|EFR76513.1| DNA mismatch repair protein MutS [Enterococcus faecium TX0133C] gi|313641836|gb|EFS06416.1| DNA mismatch repair protein MutS [Enterococcus faecium TX0133a04] gi|313644882|gb|EFS09462.1| DNA mismatch repair protein MutS [Enterococcus faecium TX0082] Length = 881 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 304/908 (33%), Positives = 493/908 (54%), Gaps = 70/908 (7%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM QY+ IK+ D+ +FYR+GDFYELF++DA+ AS+ L +TLT R ++ + IPMC Sbjct: 7 NTPMMEQYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELTLTSRNRNAEEPIPMC 66 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H A YI LI+ G+++AICEQ+E P + K +V+R V++LVTPGT+ + + Sbjct: 67 GVPHHAAQGYIDALIEKGYKVAICEQVEDP-----KTTKGMVKREVIQLVTPGTVMDSKG 121 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 LS D+N+L AV E+ A+ D+STG K + + + ++++ + +E++ E Sbjct: 122 LSAKDNNFLTAVVSQGNEFGFAYADLSTGELKTARLHDEEAVLNEASALQTKELVLG-SE 180 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 ++ + L LG V Q + + E+ + VD +EK A Sbjct: 181 ITDTLREQLSGRLGLVFSQQ------NEMEENAEFSFLTSELVDP------LEKEATGKL 228 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 ++Y+ TQ + I L +D ++ NLE+ +++ +G + +LL +D + Sbjct: 229 LTYLSVTQKRSLAHIQKAVEYQPDHFLKMDYYSKFNLELSQSIRTGKKHGTLLWLLDETK 288 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGRL + + PL + +I R + + + + +Q L D+ R R+ Sbjct: 289 TAMGGRLLKQWLDRPLIQAKQIKARQEMVASLLDSYFERIDLQSALTKVYDLERLAGRVA 348 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE---KTLSSML 439 G +D+ ++ + I L D +G + L Q ++ + + + Sbjct: 349 FGNVNGRDLIQLKTSLEQVPMIRGLIEGID-----QGQWQSLLSEMQPMDHLVQLIDQAI 403 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 DD P +G ++DG + LD RS K+ +A L+ K +ET IKNLKI N Sbjct: 404 QDDPPLQITEGNIIKDGFNEQLDMYRSAMRNGKKWLAELEAKERQETGIKNLKIGFNRVF 463 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IE+T A++ +LE +R +QT++N RF T EL +LE +I A ++ +E Sbjct: 464 GYYIEITK--ANLGNAELEKYER---KQTLANAERFITPELKELETQILEAEEKSVDLEY 518 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP-IIDNSTNFIVKDGR 618 + F + + + + L ++ I+ +D+ + A +++ Y RP ++ + ++KDGR Sbjct: 519 QLFLAVREEVKKAIQPLQVLAKAISAVDVLQSFATISERYQYVRPELVSDKHQLLIKDGR 578 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VEK L Q +I N +++ + L+TGPNM GKST++RQ AL V+MAQ Sbjct: 579 HPVVEKVLGHQE---YIPNSVEMA-----EDEMILLITGPNMSGKSTYMRQLALTVLMAQ 630 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 MG +VPA A + I D++F+R+G++D+L +G+STFMVEM+E L AT S ++ DE+ Sbjct: 631 MGCFVPAKQAVLPIFDRIFTRIGASDDLIAGQSTFMVEMMEANQALRYATPNSLILFDEL 690 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGTAT DG+++A A IEY+H + + L +TH+HELT L K L + N + + + Sbjct: 691 GRGTATYDGMALAQAIIEYIHRHVQAKTLFSTHYHELTVLEKELPQLKNVHVGAVEKDGE 750 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL--YHHN---------- 846 ++FLHK++ G AD SYGI V K+AGLP+ ++ RA DIL T E HH Sbjct: 751 VVFLHKMMDGPADKSYGIHVAKIAGLPSNLLERAADILHTLENGDNGHHTVPAEVEEKTK 810 Query: 847 -QKDMRLYYP-------EIQTKESKNN--------LSKNDKLFVEKIKCLNLDEMSPLTA 890 K ++ P IQ + + N LS+N+ +E +K +NL EM+P+ A Sbjct: 811 TAKQEQIKPPAEKVNQDHIQDRVKEENQQLSLFSELSENETEVIESLKQINLLEMTPMDA 870 Query: 891 LKTLYAVK 898 L TLY ++ Sbjct: 871 LNTLYELQ 878 >gi|242242579|ref|ZP_04797024.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis W23144] gi|242234006|gb|EES36318.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis W23144] Length = 877 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 316/905 (34%), Positives = 485/905 (53%), Gaps = 86/905 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY++IKS D L+F+R+GDFYE+FFDDA ASR L ITLTKR IPMCG Sbjct: 9 TPMMQQYLKIKSEYDDCLLFFRLGDFYEMFFDDAKEASRVLEITLTKRDAKKENPIPMCG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A++YI+ LI G+++AICEQ+E P + K +VRR VVR+VTPGT+ + + Sbjct: 69 VPYHSADNYIETLINNGYKVAICEQMEDP-----KQTKGMVRREVVRIVTPGTVMDQSGM 123 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204 +NY+++ E+ + + D+STG K++ + L+++I I+P EI+ + L Sbjct: 124 DEKKNNYILSFIE-NEEFGLCYCDVSTGELKVTHFKDTATLLNEITTINPNEIVIKQA-L 181 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISE----------SRIADYYNITTVDTFGSFSQ 254 S + + + V + D+ +++ + DY + T S Sbjct: 182 SEELKRQINMITETITVREDISDEDYDMNQLTHQLMHDTTQLLLDYIHHTQK---RDLSH 238 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQS 313 +E+ AA+ Y+K +D A+ NLE+ ++ S++ + Sbjct: 239 IEEVIEYAAVDYMK-----------------------MDYYAKRNLELTESIRLKSKKGT 275 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T G R + I PL + +IN RL+ + F+ I + ++ L D Sbjct: 276 LLWLMDETKTPMGARRLKQWIDRPLINKQQINDRLNIVEEFMDRFIERDTLRNHLNQVYD 335 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R + R+ G +D+ ++ I +I L N+L + ++L+ L L+ Sbjct: 336 IERLVGRVSYGNVNARDLIQLKHSISEIPHIKALL--NELDAQTTTQFKELEPLDDLLQ- 392 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L L ++ P +DGG + G + LDE K +A LQ K E T IK+LKI Sbjct: 393 ILEESLVEEPPISIKDGGLFKKGFNTQLDEYLEASKNGKTWLAELQAKERERTGIKSLKI 452 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GYFIE+T ++ + + + +R +QT+SN RF T EL + E+ I A + Sbjct: 453 SFNKVFGYFIEITRANLNNFQPEAFGYNR---KQTLSNAERFITDELKEKEDIILGAEDK 509 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 A+ +E E F L I +E L +++I+ +D + A +A++ NY +P + Sbjct: 510 AVELEYELFVKLREHIKTYTERLQKQAKIISELDCLQSFAEIAQKYNYVKPTFSDDKVLH 569 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +++ RHP+VE+ + ++ NDC L + ++L+TGPNM GKST++RQ A+I Sbjct: 570 LENSRHPVVERVMDHND---YVPNDCHLD-----DETFIYLITGPNMSGKSTYMRQVAII 621 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 IMAQMG+YVP A + I D++F+R+G+AD+L SG+STFMVEM+E L AT S + Sbjct: 622 SIMAQMGAYVPCDSATLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTYATENSLI 681 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 I DEIGRGT+T DGL++A A IEY+ +T+ + L +TH+HELT L + L N + + Sbjct: 682 IFDEIGRGTSTYDGLALAQAMIEYVAQTSHAKTLFSTHYHELTSLDQMLNCLKNVHVAAN 741 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE-----KLYHHNQK 848 + +IFLHKV G D SYGIQV KLA LPN VI RA IL FE +L H + Sbjct: 742 EYQGELIFLHKVKDGAVDDSYGIQVAKLADLPNEVIDRAQVILNAFEQKPSYQLSHQDTD 801 Query: 849 DMRLY--YPE----------IQTKESKNNLSK---------NDKLFVE-KIKCLNLDEMS 886 + R Y + I+T S +N + N + VE +I+ LNL M+ Sbjct: 802 NQRTVPSYNDFGQIEEEQSVIETHTSNHNYEQATFDLFDGYNQQSEVECQIRELNLSNMT 861 Query: 887 PLTAL 891 PL AL Sbjct: 862 PLEAL 866 >gi|73662774|ref|YP_301555.1| DNA mismatch repair protein MutS [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|90109859|sp|Q49X88|MUTS_STAS1 RecName: Full=DNA mismatch repair protein mutS gi|72495289|dbj|BAE18610.1| DNA mismatch repair protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 887 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 297/823 (36%), Positives = 460/823 (55%), Gaps = 40/823 (4%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPMM+QY++IKS D L+F+R+GDFYE+FF+DA +ASR L ITLTKR I Sbjct: 1 MTNQTPMMQQYLKIKSQYQDCLLFFRLGDFYEMFFEDAKVASRVLEITLTKRDAKKEDPI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A+ YI+ LI G+++AICEQ+E P R K +VRR VVR+VTPGT+ + Sbjct: 61 PMCGVPYHSADGYIETLISNGYKVAICEQMEDP-----RQTKGMVRREVVRIVTPGTVMD 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFS 200 + +NY+++ + + +A+++ D+STG K++ + LI++I I+P EI+ Sbjct: 116 QGGVDEKQNNYILSFIQSASMYALSYCDVSTGELKVTHFEDEATLINEITTINPNEIVVK 175 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 E + + + + T + V + ++ + + Y++T + Sbjct: 176 EA-IGESLKRQISLTTETITVLPDISDVKYDVNTTNDSHLYHVTQL-------------- 220 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQSLLKTID 319 + Y+ TQ + I + + +D A+ NLE+ ++ S++ +LL +D Sbjct: 221 --LLDYVYHTQKRDLSHIESVITYEAVDFMKMDFYAKRNLELTESIRLKSKKGTLLWLMD 278 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G R + I PL +I +RLD+++ FI + I + ++ L D+ R + Sbjct: 279 ETKTPMGARRLKQWIDRPLIQKKQIESRLDTVDQFINHFIERDTLRGYLNQVYDIERLVG 338 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G +D+ ++ I NI NL D E++ E L+ L L S L Sbjct: 339 RVSYGNVNARDLIQLKHSISEIPNIKNLLQAFD--EQMTAQFEALEPLDDLLNLLEES-L 395 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 ++ P ++GG + G + +LD K +A LQ K + T IK+LKI N Sbjct: 396 KEEPPISVKEGGLFKTGFNETLDSYLEASKNGKNWLAELQTKERQRTGIKSLKISFNKVF 455 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHR-QTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GYFIE+T ++ + + + HR QT+SN RF T EL + E+ I A + A+ +E Sbjct: 456 GYFIEITRANL----QGFDPTEFGYHRKQTLSNAERFITDELKEKEDIILGAEDKAIELE 511 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F L I +E L ++VI+ +D + A +A++ NY RP + + R Sbjct: 512 YQLFVQLREQIKAYTERLQKQAKVISELDCLQSFAEIAQKYNYARPTFSEDKTLELVNSR 571 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ + ++ NDC+L DK + ++L+TGPNM GKST++RQ A+I IMAQ Sbjct: 572 HPVVERVMDHND---YVPNDCEL----DKETF-IYLITGPNMSGKSTYMRQVAIISIMAQ 623 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 MG+YVP A + + D++F+R+G+AD+L SG+STFMVEM+E L AT S +I DEI Sbjct: 624 MGAYVPCESAILPVFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALAHATEHSLIIFDEI 683 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGL++A A IEY+ T+ + L +TH+HELT L +SL N + ++ N Sbjct: 684 GRGTSTYDGLALAQAMIEYVAHTSHAKTLFSTHYHELTTLDQSLACLKNVHVAANEYNGE 743 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 +IFLHKV G D SYGIQV KLA LP VI+R IL FE+ Sbjct: 744 LIFLHKVKDGAVDDSYGIQVAKLAHLPVEVINRVQVILDAFEQ 786 >gi|329313965|gb|AEB88378.1| DNA mismatch repair protein mutS [Staphylococcus aureus subsp. aureus T0131] Length = 872 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 318/911 (34%), Positives = 495/911 (54%), Gaps = 85/911 (9%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPMM+QY++IKS D L+F+R+GDFYE+F++DA ASR L ITLTKR I Sbjct: 1 MSNVTPMMQQYLKIKSEYQDCLLFFRLGDFYEMFYEDAKEASRVLEITLTKRDAKKENPI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A+ YI L+ G+++AICEQ+E P + K +VRR VVR+VTPGT+ E Sbjct: 61 PMCGVPYHSADSYIDTLVNNGYKVAICEQMEDP-----KQTKGMVRREVVRIVTPGTVME 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD-RLISDIMRIDPREIIFS 200 + +NY+++ + E A+++ D+STG K++ N + L+++I I+P E++ + Sbjct: 116 QGGVDDKQNNYILSFVMNQPEIALSYCDVSTGELKVTHFNDEATLLNEITTINPNEVVIN 175 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDH-SISESRIADYYNITTVDTFGSFSQVEKTA 259 + + + Q N+ + ++ E+ ++ Y++ + ++ A Sbjct: 176 D-------------NISDNLKRQINMVTETITVRETLSSEIYSVNQTE-----HKLMYQA 217 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSA-----ARSNLEILRTLS-GSREQS 313 A + YI TQ + I ED+ ID A+ NLE+ ++ S++ + Sbjct: 218 AQLLLDYIHHTQKRDLSHI-----EDVVQYAAIDYMKMDFYAKRNLELTESIRLKSKKGT 272 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T G R + I PL +I RLD ++ F + I + ++ L D Sbjct: 273 LLWLMDETKTPMGARRLKQWIDRPLISKEQIEARLDIVDEFSAHFIERDTLRTYLNQVYD 332 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R + R+ G +D+ ++ I NI L N + + V +L+ L L+ Sbjct: 333 IERLVGRVSYGNVNARDLIQLKHSISEIPNIKALL--NSMNQNTLVQVNQLEPLDDLLD- 389 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L L ++ P +DGG + G + LDE K +A LQ K + T IK+LKI Sbjct: 390 ILEQSLVEEPPISVKDGGLFKVGFNTQLDEYLEASKNGKTWLAELQAKERQRTGIKSLKI 449 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GYFIE+T ++ L+ S+ ++ +QT+SN RF T EL + E+ I A + Sbjct: 450 SFNKVFGYFIEITRAN---LQNFEPSEFGYMRKQTLSNAERFITDELKEKEDIILGAEDK 506 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 A+ +E + F L + + +E L +++I+ +D + A +A++ NY RP + Sbjct: 507 AIELEYQLFVQLREEVKKYTERLQQQAKIISELDCLQSFAEIAQKYNYTRPSFSENKTLE 566 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + + RHP+VE+ + ++ N+C L N ++L+TGPNM GKST++RQ A+I Sbjct: 567 LVESRHPVVERVM---DYNDYVPNNCRLD-----NETFIYLITGPNMSGKSTYMRQVAII 618 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 IMAQMG+YVP A + I D++F+R+G+AD+L SG+STFMVEM+E L AT S + Sbjct: 619 SIMAQMGAYVPCKEAVLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTYATEDSLI 678 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 I DEIGRGT+T DGL++A A IEY+ ET+ + L +TH+HELT L ++L N + + Sbjct: 679 IFDEIGRGTSTYDGLALAQAMIEYVAETSHAKTLFSTHYHELTTLDQALPSLKNVHVAAN 738 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE------------K 841 + +IFLHKV G D SYGIQV KLA LP VISRA IL FE K Sbjct: 739 EYKGELIFLHKVKDGAVDDSYGIQVAKLADLPEKVISRAQVILSEFEASAGKKSSISNLK 798 Query: 842 LYHH----NQKDMRLYYPEIQTKESKNNLSKND------KLF-------VE-KIKCLNLD 883 + + NQ+++ L +E+ + LS+ D LF +E +IK LNL Sbjct: 799 MVENEPEINQENLNL-----SVEETTDTLSQKDFEQASFDLFENDQESEIELQIKNLNLS 853 Query: 884 EMSPLTALKTL 894 M+P+ AL L Sbjct: 854 NMTPIEALVKL 864 >gi|15677973|ref|NP_275145.1| DNA mismatch repair protein [Neisseria meningitidis MC58] gi|34222689|sp|Q9JX94|MUTS_NEIMB RecName: Full=DNA mismatch repair protein mutS gi|7227419|gb|AAF42468.1| DNA mismatch repair protein MutS [Neisseria meningitidis MC58] gi|93117343|gb|ABE99589.1| MutS [Neisseria meningitidis H44/76] gi|316984525|gb|EFV63491.1| DNA mismatch repair protein MutS [Neisseria meningitidis H44/76] gi|325139470|gb|EGC62010.1| DNA mismatch repair protein MutS [Neisseria meningitidis CU385] gi|325201196|gb|ADY96651.1| DNA mismatch repair protein MutS [Neisseria meningitidis H44/76] Length = 864 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 308/893 (34%), Positives = 477/893 (53%), Gaps = 62/893 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM+QY+ IK+ + D LVFYRMGDFYE+FFDDA+ A++ L ITLT RG+ G+ + M G Sbjct: 7 SPMMQQYLGIKAQHTDKLVFYRMGDFYEMFFDDAVEAAKLLDITLTTRGQVDGEPVKMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ +L+K+G +AICEQ+ + K V R VVR+VTPGTLT+ LL Sbjct: 67 VPFHAAEQYLARLVKLGKSVAICEQV-----GEVGAGKGPVERKVVRIVTPGTLTDSALL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 ++N ++AV+ + +AW + +G FK + D+L ++ R+ EI+ + Sbjct: 122 EDKETNRIVAVSPDKKYIGLAWASLQSGEFKTKLTTVDKLDDELARLQAAEILLPDS--- 178 Query: 206 HAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQ---VEKTAAA 261 K+ + V + N + F E + +Y+ + FG + V AA Sbjct: 179 ----KNAPQLQTASGVTRLNAWQFAADAGEKLLTEYFGCQDLRGFGLDGKEHAVAIGAAG 234 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 A ++YI+ TQ + + E + +D+A R NLEI +TLSG + +L+ T+D Sbjct: 235 ALLNYIRLTQNLMPQHLDGLSLETDSQYIGMDAATRRNLEITQTLSGKKSPTLMSTLDLC 294 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G RL A + PL + I R +++ P+Q LKS D+ R +R+ Sbjct: 295 ATHMGSRLLALWLHHPLRNRAHIRARQEAVAALESQ---YKPLQCRLKSIADIERIAARI 351 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL-PQSLE--KTLSSM 438 +G P+D+A +RD + + I +L E + LK + P++L + L Sbjct: 352 AVGNARPRDLAALRDSLFALSEI-------ELSAECSSLLGTLKAVFPENLSTAEQLRQA 404 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + + + +DG + G LDE R +++ + L+ K E T + LK++ N Sbjct: 405 ILPEPSVWLKDGNVINHGFHPELDELRRIQNHGDEFLLDLEAKERERTGLSTLKVEFNRV 464 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 G++IE++ + A D + RQT+ N RF T EL E+++ A AL +E Sbjct: 465 HGFYIELSKTQAEQAPAD------YQRRQTLKNAERFITPELKAFEDKVLTAQEQALALE 518 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F+ + + L A++ A +D+ + LAKE+N+ RP + +++GR Sbjct: 519 KQLFDGVLKNLQTALPQLQKAAKAAAALDVLSTFSALAKERNFVRPEFADYPVIHIENGR 578 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ ++ F AN DL + +L LLTGPNMGGKST++RQ ALIV++A Sbjct: 579 HPVVEQQVRH-----FTANHTDLD-----HKHRLMLLTGPNMGGKSTYMRQVALIVLLAH 628 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 G +VPA A IG +D++F+R+G++D+LAS RSTFMVEM ETA IL+ AT QS V++DE+ Sbjct: 629 TGCFVPADAATIGPIDQIFTRIGASDDLASNRSTFMVEMSETAYILHHATEQSLVLMDEV 688 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGL++A A E+L + N+ L ATH+ ELT L ++ N L + + Sbjct: 689 GRGTSTFDGLALAHAVAEHLLQKNKSFSLFATHYFELTYLPEAHTAAVNMHLSALEQGQD 748 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 I+FLH++ PG A SYGI V KLAGLP + A L E N+ + ++ Sbjct: 749 IVFLHQIQPGPAGKSYGIAVAKLAGLPVRALKSAQKHLNGLENQAAANRPQLDIF----S 804 Query: 859 TKESKNNLSKNDKLFVEK-------------IKCLNLDEMSPLTALKTLYAVK 898 T S+ N FV+K ++ L+ D ++P AL LY +K Sbjct: 805 TMPSEKGDEPNVGNFVDKAEEKHFEGILAAALEKLDPDSLTPREALSELYRLK 857 >gi|255507408|ref|ZP_05383047.1| DNA mismatch repair protein MutS [Chlamydia trachomatis D(s)2923] gi|289525836|emb|CBJ15317.1| DNA mismatch repair protein [Chlamydia trachomatis Sweden2] gi|296435416|gb|ADH17594.1| DNA mismatch repair protein MutS [Chlamydia trachomatis E/150] gi|296439133|gb|ADH21286.1| DNA mismatch repair protein MutS [Chlamydia trachomatis E/11023] Length = 820 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 299/828 (36%), Positives = 468/828 (56%), Gaps = 43/828 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+Q+ + K D L+ +R+G+FYE FFDDAL+ ++ L ITLT+R +++PM G Sbjct: 6 TPMMQQWHQCKEQAGDCLLLFRLGEFYEAFFDDALILAQNLDITLTQR-----QNVPMSG 60 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P + Y+ +L+ G ++AI EQ ++ G+K LV R + RL+TPG L LL Sbjct: 61 IPATCLDGYVDRLVSRGFKVAIAEQADN-----TEGSKGLVPRTINRLITPGALLSSSLL 115 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREIIFSEKEL 204 +NY++A+ ++ + + ++ +D+S G F ++ ++ + LI I R+ P E+ L Sbjct: 116 PEKANNYVLAINQVGSLYGLSCLDLSIGTFLVAEYDNTKDLIEAICRLAPTEL------L 169 Query: 205 SHAEY--------KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 SHA++ K L + L + F++ + ++ + ++++D FG V Sbjct: 170 SHAKFYQKNEAVIKQLQQHLRITLSEYVSWAFEYQSATKKLYTCFQVSSLDGFGLQGLVP 229 Query: 257 K-TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SL 314 AA A +SYI+ T ++ + P+ Q L ID A+++NLE+L + G + SL Sbjct: 230 AINAAGALLSYIQDTLLLPISHLSIPKIYGQQKHLLIDKASQTNLELLSPIHGEHGKGSL 289 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L+ ++ + T GGRL + +P D +I R DS+ FF+Q L +++ L D+ Sbjct: 290 LQVMERTSTPMGGRLLRNTLINPFYDLKEITLRQDSVEFFLQQADLRKILKRQLSCVRDL 349 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R +++ PKDI +RD + S +I + LPE L L SL KT Sbjct: 350 ERLSTKISTSLATPKDIGTLRDSLLSCTHIADNLQNCALPEFLENKFLIAPPLC-SLIKT 408 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 LS+ L +LP +G + L R++++ SK I Q + ET IK LK+ Sbjct: 409 LSTELIQELPLKVSEGNIFANHYHPDLLRLRNIKENSKSWILEYQERIRNETGIKKLKVC 468 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 + LGY+IEV S+ A L K+ FI RQ+ + RFTT EL ++ + + + Sbjct: 469 YAQALGYYIEVASNLAPQLPKE------FIRRQSRLHAERFTTQELQQFQDEVFSVEDKL 522 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 +E + F+ L I+E + + S +A +D ++LA LA E +Y RP++D+S + Sbjct: 523 QTLETKLFKELCFYIVEHRDLILKLSTAVADLDYVVSLAELAAEYDYRRPLVDHSDALSI 582 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 G HP+ L + + FI ND + + + LLTGPNM GKST++RQ AL+V Sbjct: 583 TKGMHPVALTLLDKGT---FIPNDTVMHSAQTR----MILLTGPNMAGKSTYIRQIALLV 635 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMAQMGS++PA AHIGIVDK+F+R+G+ DNL+ G STFMVEM ETA+IL+ AT++S VI Sbjct: 636 IMAQMGSFIPARSAHIGIVDKIFTRIGAGDNLSKGMSTFMVEMAETANILHNATDRSLVI 695 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQV 792 LDEIGRGT+T DGL+IA A +E+L T+ + + L ATH+ ELT+L + N V Sbjct: 696 LDEIGRGTSTYDGLAIAQAVVEFLLFTDGKKAKTLFATHYKELTELEMHCQHVENFHAMV 755 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 +++ IF+++++ G + S+GI V KLAG P +V+SRA IL FE Sbjct: 756 KENSGQPIFMYEIVKGHSKKSFGIHVAKLAGFPLSVVSRAQQILHQFE 803 >gi|288965516|pdb|3K0S|A Chain A, Crystal Structure Of E.Coli Dna Mismatch Repair Protein Muts Mutant, In Complex With Gt Mismatched Dna gi|288965517|pdb|3K0S|B Chain B, Crystal Structure Of E.Coli Dna Mismatch Repair Protein Muts Mutant, In Complex With Gt Mismatched Dna Length = 799 Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust. Identities = 300/840 (35%), Positives = 458/840 (54%), Gaps = 62/840 (7%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+ +K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 4 ENFDAHTPMMQQYLRLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 63 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 64 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 118 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 119 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 178 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 179 YAE---DFAEM-SLIEG---RRGLRRRPLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 229 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 230 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 289 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 290 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAGLQPVLRQVGD 346 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 347 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQALR 393 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 394 EKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRE 453 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 454 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 507 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 508 YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYT 567 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNMGG Sbjct: 568 CPTFIDKPGIRITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNMGG 618 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 619 KSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 678 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V+++EIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 679 ILHNATEYSLVLMNEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 738 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 739 EGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 798 >gi|297539142|ref|YP_003674911.1| DNA mismatch repair protein MutS [Methylotenera sp. 301] gi|297258489|gb|ADI30334.1| DNA mismatch repair protein MutS [Methylotenera sp. 301] Length = 858 Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust. Identities = 319/894 (35%), Positives = 476/894 (53%), Gaps = 73/894 (8%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY+ +K+ +PD L+FYRMGDFYELFF+DA ASR LGITLT RG G+ I M G Sbjct: 18 TPMMRQYLGLKAQHPDMLLFYRMGDFYELFFEDAEKASRLLGITLTHRGSSNGQPIKMAG 77 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ KL K+G +AICEQI P +K V R V R++TPGTLT+ LL Sbjct: 78 VPYHAAEGYLAKLAKLGEAVAICEQIGDPATSKGP-----VDRQVARILTPGTLTDTALL 132 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 + N L+++ + +A +++++G F +S L +I RI P EI+ ++ + Sbjct: 133 DESRDNQLLSIFQAEGVIGLARLNLASGTFILSEIAVGLLGQEIERIAPSEILLAD-DFM 191 Query: 206 HAEYKSLFETLGNVAVAQPNVF---FDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 HA +G VA+ + FD + + + +N ++ FG S AA Sbjct: 192 HA-------AIGLSKVAKKRLSPWQFDFDSAFNTLTKQFNTYDLNGFGCASLNPAICAAG 244 Query: 263 AI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 A+ Y+K TQ P I E + + +D+A R NLEI TL G +L ++ + Sbjct: 245 ALLDYVKHTQRTTLPHINAISVEVTSAYVQLDAATRRNLEIDMTLRGEASPTLYSLLNTT 304 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI-LKSSPDVPRSLSR 380 T G RL + PL D + R +++ IQN N + LK+ D+ R +R Sbjct: 305 QTAMGARLLRHWLHHPLQDRNLVMKRHEAVAELIQN----NSYAMLPLKNIGDIERITAR 360 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL------PQSLEKT 434 + + P+D+ SG++ L + L+ L P ++ Sbjct: 361 IALKTARPRDL--------SGLSASLQQLPLLQAQLQNSQTSLLQTLGSSLTPPNAVASL 412 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE--TKIKNLK 492 L++ + + R+GG + DG DA LDE R+L++ + LQ + AE+ T I NLK Sbjct: 413 LTTAIKAEPSVVLREGGVIADGYDAELDELRALQNNHGEFL--LQYEAAEKARTGITNLK 470 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 +++N+ G++IE++ + A + + RQT+ N+ RF T EL E+++ +A + Sbjct: 471 VEYNSVHGFYIEMSRAQAETAPAE------YRRRQTLKNVERFITPELKAFEDKVLSAND 524 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 AL E F + ++ +L + +A +D+ A A+ NY P Sbjct: 525 RALAREKLLFAEVLEKLMPFIVALQTNAGAVASLDVLSCFAERAETLNYVAPEFITEAGI 584 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 + +GRHP+VE ++PFIAND L+ +L L+TGPNMGGKSTF+RQ AL Sbjct: 585 QIVNGRHPVVESI-----AQPFIANDVVLNPYR-----QLLLITGPNMGGKSTFMRQTAL 634 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 IV++A G YVPAS A IG +D++ +R+G++D+LA GRSTFMVEM ETA+IL+ AT++S Sbjct: 635 IVLLAHCGCYVPASSAKIGEIDRIMTRIGASDDLAGGRSTFMVEMTETANILHNATDKSL 694 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 V+LDEIGRGT+T DGLS+AWA + L E NR L ATH+ ELT + K+ N L Sbjct: 695 VLLDEIGRGTSTFDGLSLAWAVAKQLLEKNRSYTLFATHYFELTRIVDEFKQAANVHLDA 754 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 + I+F+HKV G A+ SYG+QV +LAG+P +V++ A L E N Sbjct: 755 VEHGHNIVFMHKVEEGAANQSYGLQVAQLAGIPKSVVASAKRKLLQLENQNVANNNAQVD 814 Query: 853 YY------PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAW 900 + PEI N L + +N D+++P AL+ LY +K + Sbjct: 815 LFSSEAIAPEIVLHPVVNAL-----------EGVNPDDLTPKQALEVLYHLKTF 857 >gi|120434623|ref|YP_860313.1| DNA mismatch repair protein MutS [Gramella forsetii KT0803] gi|189030728|sp|A0LXZ7|MUTS_GRAFK RecName: Full=DNA mismatch repair protein mutS gi|117576773|emb|CAL65242.1| DNA mismatch repair protein MutS [Gramella forsetii KT0803] Length = 871 Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust. Identities = 302/883 (34%), Positives = 492/883 (55%), Gaps = 40/883 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M+QY IK PD+++ +R+GDFYE F +DA+ A+R L I LT R G+ + G Sbjct: 10 TPLMQQYNSIKLKYPDAMLLFRVGDFYETFGEDAVKAARILNIVLTNRNNG-GERTELAG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H+ N Y+ KL+K G R+AIC+Q+E P + K++V+R V LVTPG D +L Sbjct: 69 FPHHSLNTYLPKLVKAGQRVAICDQLEDP-----KMTKTIVKRGVTELVTPGVAMNDDIL 123 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 + +N+L AV + ++++D+STG F + N + + + P EI+ +K Sbjct: 124 NSKSNNFLCAVHFGKKNLGVSFLDVSTGEFLCAQGNTEYIDKLLQNFGPSEILVQKK--- 180 Query: 206 HAEYKSLF-ETLGN--VAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK--TAA 260 +K F E+ G + F SE + ++ ++ FG +E+ A+ Sbjct: 181 ---FKKEFNESFGKDKHCFYLDDWIFKIDYSEETLNAHFQTKSLKGFG-IDHLEEGIIAS 236 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 A + Y+ +T+ I R + +++D NLE+ + + + +LL ID Sbjct: 237 GAVLYYLAETRHHRLQHINSINRIAEEQYVWMDRFTIRNLELYHS-TAANAVTLLDVIDK 295 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 +I+ GGRL +A PL D+ I RL ++F I+NP ++ IQ ++ D+ R +S+ Sbjct: 296 TISPMGGRLLKRWLALPLKDAEMIEKRLQVVDFLIKNPEILANIQDQIREISDLERLISK 355 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + + P+++ +++ + + I + L LK + E L+ + L EK +S +S Sbjct: 356 VATQKISPREVNQLKNSLNAIIPVKELALKCN-NEALKIIGDNLHSCDLLREK-ISESIS 413 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 +D P + GG + G + LDE R L K + + + E+T I +LKI NN G Sbjct: 414 EDAPVLIQRGGVIASGFSSELDELRGLAFSGKDYLDKMIQRETEKTGISSLKIGSNNVYG 473 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IEV ++ KD + + + +QT+ N R+ T EL + E++I A L +E E Sbjct: 474 YYIEVRNTH-----KD-KVPEEWTRKQTLVNAERYITEELKEYESKILGAEEKILHLEQE 527 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F L + E + + +++IA +D + A A+ +NY +P I +S +++GRHP Sbjct: 528 LFGKLIAWMAEYIDPVQQNARLIARLDCLCSFAQQAQAENYSKPEITDSYGMDIEEGRHP 587 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 ++EK L + ++ N+ L D+ ++ ++TGPNM GKS LRQ ALIV+MAQMG Sbjct: 588 VIEKQLP--PGEVYVTNNLHL----DREEQQIIMITGPNMSGKSAILRQTALIVLMAQMG 641 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA A IG+VDK+F+RVG++DN++ G STFMVEM ETASILN +++S V+LDEIGR Sbjct: 642 SFVPARSAEIGLVDKIFTRVGASDNISMGESTFMVEMNETASILNNISDRSLVLLDEIGR 701 Query: 741 GTATLDGLSIAWATIEYLHE-TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 GT+T DG+SIAWA EYLHE + + L ATH+HEL ++ ++ +R N + V + + + Sbjct: 702 GTSTYDGISIAWAISEYLHEHPAKPKTLFATHYHELNEMCETFERIKNFNVSVKELKDNV 761 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 +FL K++PG ++HS+GI V K+AG+P V+ RA IL E H+ +D + Sbjct: 762 LFLRKLVPGGSEHSFGIHVAKMAGMPQMVLHRANKILAKLEA--SHSMEDSGAVLKKSAE 819 Query: 860 KESKNNLSKNDKLFVEKIK----CLNLDEMSPLTALKTLYAVK 898 E + + D +E +K +++D ++P+ AL L +K Sbjct: 820 DEMQLSFFNLDDPLLEDLKQELLGIDIDTLTPVEALMKLNEIK 862 >gi|157364284|ref|YP_001471051.1| DNA mismatch repair protein MutS [Thermotoga lettingae TMO] gi|167012384|sp|A8F753|MUTS_THELT RecName: Full=DNA mismatch repair protein mutS gi|157314888|gb|ABV33987.1| DNA mismatch repair protein MutS [Thermotoga lettingae TMO] Length = 811 Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust. Identities = 279/814 (34%), Positives = 468/814 (57%), Gaps = 46/814 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY++IKS D+++ +R+GDFYE FF+DA + S+ L + LT R +D PM G Sbjct: 4 TPMMQQYMDIKSKYKDAILLFRLGDFYEAFFEDAEIVSKTLDLVLTHR-----QDAPMAG 58 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H N Y++KL++ G+++AIC+Q+E P AK LV+R V R+VTPGT+ ED LL Sbjct: 59 VPYHALNTYLKKLVQFGYKVAICDQVEDPSTAK-----GLVKREVTRIVTPGTVLEDDLL 113 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 +NYL+A+ R ++E+++A +DISTG F +S + +I + + +++ E +L Sbjct: 114 DQNSNNYLVAICR-KSEYSVAGVDISTGESFVVSFKDFQSMIDFLGSVKVSQVL-CEPDL 171 Query: 205 SHAEYKSLFETLGNVAV-AQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + L + L ++ + + + D ++ E IA+ + ++ +D S ++ A Sbjct: 172 R----QDLEKNLADIMIESLADWHLDDALLEKDIAEVFKVSDIDHLELGSNLK--VFGAL 225 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 + Y++ T M + P Q +F+D A +E L + G + ++L ++++ T Sbjct: 226 VRYLRYTLMSPCTLVKPPRIIRDQMYVFLDPAT---IEHLSLVGGEKGKNLFDVLNHTKT 282 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL I PL D +IN RLD + F+++ IL+N I++ L++ D+ R +R+ Sbjct: 283 SMGSRLLKNWILQPLRDLYEINKRLDKVQAFVEDSILLNEIREYLQAVRDIQRIANRINY 342 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKND-LPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 G+ KD+ +R ++ I + L N+ PE V+ L + + L+ + ++ Sbjct: 343 GKASVKDLVALRSTLQVCPYIKEVLLTNEAFPEA--AMVDCLHDICE----ILNDAIKEE 396 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 + +G +++G D LD+ R L S+ + + + + + T I NL++ +N+ GY+ Sbjct: 397 PSSVIGEGKVIKEGYDEQLDQLRELVYHSQEFLNNFEQRERDRTGIPNLRVGYNSVFGYY 456 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IE+T S S + + ++ +QT+ N RF T EL + E ++ A + E E + Sbjct: 457 IEITKSHLSKIPPN------YVRKQTLVNAERFITDELKEFEQKMLTAKENLERREKEIY 510 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 + + ++ + + ++ +A ID+ LA +A Y +P N ++++ RHP+V Sbjct: 511 DEICASLSSKVGLIIELAEFLAQIDVLSTLAYVAIRYGYTKPSFSNDGKLLLRNSRHPVV 570 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 E+ + F+ ND ++ + +LTGPNM GKSTF+RQ AL+ IMAQMGS+ Sbjct: 571 ERLVDT-----FVPNDLEMD-----RTKNFIILTGPNMSGKSTFIRQVALVSIMAQMGSF 620 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA A + + D++F+++G D++ASG+STF++EM E A I+ QAT S ++LDE+GRGT Sbjct: 621 VPADEAILPVFDRIFAKMGIRDDIASGKSTFLIEMNEVAKIVYQATENSLILLDEVGRGT 680 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFL 802 +T DG+SIAWA EYL C+ + ATHF ELT+L+K N T+QV + +IFL Sbjct: 681 STFDGISIAWAVSEYLQNQISCKCIFATHFTELTELAKMYDGIVNKTVQVIEEKNQVIFL 740 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 H+V+ GIAD SYGI+V +AGLP +I RA ++L Sbjct: 741 HRVVDGIADRSYGIEVAGIAGLPGEIIQRAREVL 774 >gi|114331988|ref|YP_748210.1| DNA mismatch repair protein [Nitrosomonas eutropha C91] gi|122313305|sp|Q0AEI7|MUTS_NITEC RecName: Full=DNA mismatch repair protein mutS gi|114309002|gb|ABI60245.1| DNA mismatch repair protein MutS [Nitrosomonas eutropha C91] Length = 880 Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust. Identities = 304/894 (34%), Positives = 478/894 (53%), Gaps = 52/894 (5%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 + TPMM+QY+ IK+ + D L+FYRMGDFYELF++DA A+R L ITLT RG G+ I M Sbjct: 15 AHTPMMQQYLRIKTQHTDKLLFYRMGDFYELFYEDAEKAARLLDITLTHRGSSAGEPIKM 74 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H A+ Y+ KL+K+G IAICEQI P +K V R VVR++TPGTLT+ Sbjct: 75 AGVPFHAADQYLAKLVKLGESIAICEQIGDPAT-----SKGPVERQVVRIITPGTLTDAG 129 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 LL ++ ++ +A +AW++++ G ++ ++ D L S++ R+ P EI+ E Sbjct: 130 LLEERGNSIVLTLALHHGVIGLAWLNLAAGDMRVLETSPDNLASELERLHPSEILLPES- 188 Query: 204 LSHAEYKSLFETLGNVAVAQ--PNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAA 260 +L L + + P+ FD+ + ++ + ++ FG + AA Sbjct: 189 ------LALPVILNSFTAPKRLPDWQFDYEHAMQQLTRQFGTRDLNAFGCEELRAAIMAA 242 Query: 261 AAAISYIKKTQMVNK-----PTIGYPER---EDIQSTLFIDSAARSNLEILRTLSGSREQ 312 A Y++ TQ +G+ + E ++ L +D+A R NLEI TL G Sbjct: 243 GALFEYVRLTQHTATDESATQVLGHLQTLRVERPETYLRMDAATRRNLEITLTLRGEEAP 302 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFI--QNPILINPIQKILKS 370 +L +D T G RL + PL + + RLD+++ I + IL I++ LK Sbjct: 303 TLSSLLDICATSMGSRLLRHWLHHPLRNRITLQQRLDAVSDLIGAKPGILYAGIRERLKH 362 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP-Q 429 D+ R SR+ + P+D++ +RD + + I+ L + A+ + +P Sbjct: 363 IADIERITSRIALRTARPRDLSGLRDSLTALPEIIKLITTST-------AIAIHRFVPAM 415 Query: 430 SLEKTLSSMLSDDLPTFK----RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE 485 + TL+ +L L R+GG + DG DA LDE R+L+ + L+ + E Sbjct: 416 EPDTTLTQLLVHALQPVPGAVIREGGVIADGYDAELDELRALQKNCGEFLLQLEARERER 475 Query: 486 TKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 T I LK+++N G++IEVT + D + RQT+ N R++ EL EN Sbjct: 476 TGIPTLKVEYNRVHGFYIEVTRIHGEKIPAD------YRRRQTLKNAERYSIPELQVFEN 529 Query: 546 RITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPI 605 + A AL E + +E L + + L ++ +A +D+ A A A Y +P+ Sbjct: 530 KTLTAREQALAQEKKLYEQLLEQLADFIIPLQEIARSVAELDVLCAFAERADLFGYTKPV 589 Query: 606 IDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKST 665 + ++ GRHP+VE ++Q +IAND L + ++ ++TGPNMGGKST Sbjct: 590 FTDDPALDIEAGRHPVVENQIEQ-----YIANDIQLGAVT-REGRQMLIITGPNMGGKST 643 Query: 666 FLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILN 725 ++RQ ALI+++A GS+VPA A IG +D++F+R+G+AD+LA GRSTFMVEM E ASIL Sbjct: 644 YMRQTALIILLAHCGSFVPAGSARIGPIDQIFTRIGAADDLAGGRSTFMVEMTEAASILR 703 Query: 726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRF 785 AT QS V++DEIGRGT+T DGL++A+A +L N+ L ATH+ ELT L++ + Sbjct: 704 NATAQSLVLVDEIGRGTSTFDGLALAFAIARHLLTQNQSYTLFATHYFELTRLAEEFPQA 763 Query: 786 HNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH 845 N + + I+FLH++ G A SYG+ V LAG+P+ VI A IL E+ Sbjct: 764 INVHVTAVEHKRRIVFLHRIEEGSASRSYGLHVAALAGVPDKVIRNAGKILAQLEQEALS 823 Query: 846 NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 L+ +E+ + ++ ++ L+ DE++P AL+ LY +K+ Sbjct: 824 KSPQQTLFE---TIEENAEAAPASAHPVLDYLEQLHPDELTPREALEQLYLIKS 874 >gi|257899421|ref|ZP_05679074.1| DNA mismatch repair protein MutS [Enterococcus faecium Com15] gi|257837333|gb|EEV62407.1| DNA mismatch repair protein MutS [Enterococcus faecium Com15] Length = 881 Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust. Identities = 304/908 (33%), Positives = 490/908 (53%), Gaps = 70/908 (7%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM QY+ IK+ D+ +FYR+GDFYELF++DA+ AS+ L +TLT R ++ + IPMC Sbjct: 7 NTPMMEQYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELTLTSRNRNAEEPIPMC 66 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H A YI LI+ G+++AICEQ+E P + K +V+R V++LVTPGT+ + + Sbjct: 67 GVPHHAAQGYIDALIEKGYKVAICEQVEDP-----KTTKGMVKREVIQLVTPGTVMDSKG 121 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 LS D+N+L AV E+ A+ D+STG K + + + ++++ + +E++ E Sbjct: 122 LSAKDNNFLTAVVSQGNEFGFAYADLSTGELKTARLHDEEAVLNEASALQTKELVLG-SE 180 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 ++ + L LG V Q + + E+ + VD +EK A Sbjct: 181 ITDTLREQLSGRLGLVFSQQ------NEMEENAEFSFLTSELVDP------LEKEATGKL 228 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 ++Y+ TQ + I L +D ++ NLE+ +++ +G + +LL +D + Sbjct: 229 LTYLAVTQKRSLAHIQKAVEYQPDHFLKMDYYSKFNLELSQSIRTGKKHGTLLWLLDETK 288 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGRL + + PL + +I R + + + + +Q L D+ R R+ Sbjct: 289 TAMGGRLLKQWLDRPLIQAKQIKARQEMVASLLDSYFERIDLQSALTKVYDLERLAGRVA 348 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE---KTLSSML 439 G +D+ ++ + I L D +G + L Q ++ + + + Sbjct: 349 FGNVNGRDLIQLKTSLEQVPMIRGLIEGID-----QGQWQSLLSEMQPMDHLVQLIDQAI 403 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 DD P +G ++DG + LD RS K+ +A L+ K +ET IKNLKI N Sbjct: 404 QDDPPLQITEGNIIKDGFNEQLDTYRSAMRNGKKWLAELEAKERQETGIKNLKIGFNRVF 463 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IE+T A++ +LE +R +QT++N RF T EL +LE +I A ++ +E Sbjct: 464 GYYIEITK--ANLGNAELEKYER---KQTLANAERFITPELKELETQILEAEEKSVDLEY 518 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP-IIDNSTNFIVKDGR 618 + F + + + + L ++ I+ D+ + A +++ Y RP ++ + ++KDGR Sbjct: 519 QLFLAVREEVKKAIQPLQVLAKAISAADVLQSFATISERYQYVRPELVSDKHQLLIKDGR 578 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VEK L Q +I N +++ + L+TGPNM GKST++RQ AL V+MAQ Sbjct: 579 HPVVEKVLGHQE---YIPNSVEMA-----EDEMILLITGPNMSGKSTYMRQLALTVLMAQ 630 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 MG +VPA A + I D++F+R+G++D+L +G+STFMVEM+E L AT S ++ DE+ Sbjct: 631 MGCFVPAKQAVLPIFDRIFTRIGASDDLIAGQSTFMVEMMEANQALRYATPNSLILFDEL 690 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGTAT DG+++A A IEY+H + + L +TH+HELT L K L + N + + + Sbjct: 691 GRGTATYDGMALAQAIIEYIHRHVQAKTLFSTHYHELTVLEKELPQLKNVHVGAVEKDGE 750 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL--YHH------NQKDM 850 ++FLHK++ G AD SYGI V K+AGLP ++ RA DIL T E HH +K Sbjct: 751 VVFLHKMMDGPADKSYGIHVAKIAGLPANLLERAADILHTLENGDNGHHTVPAEIEEKTK 810 Query: 851 RLYYPEIQTKESKNN--------------------LSKNDKLFVEKIKCLNLDEMSPLTA 890 +I+ E K N LS+N+ +E +K +NL EM+P+ A Sbjct: 811 TAKQEQIKPPEEKVNQDPIQDSVKEENQQLSLFGELSENETEVIESLKQINLLEMTPMDA 870 Query: 891 LKTLYAVK 898 L TLY ++ Sbjct: 871 LNTLYELQ 878 >gi|119504840|ref|ZP_01626918.1| DNA mismatch repair protein [marine gamma proteobacterium HTCC2080] gi|119459445|gb|EAW40542.1| DNA mismatch repair protein [marine gamma proteobacterium HTCC2080] Length = 843 Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust. Identities = 309/878 (35%), Positives = 481/878 (54%), Gaps = 45/878 (5%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY+ IK +P L+FYRMGDFYELF+DDA +A+ L ITLT RGK G IPM GVP Sbjct: 1 MMQQYLAIKRDHPHELLFYRMGDFYELFYDDAKVAAEALDITLTARGKSGGHPIPMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A +Y+ +L++ G +AI EQI P +K V R V R+VTPGTLT++ LL Sbjct: 61 YHAAENYLARLVRHGFAVAIAEQIGDPAT-----SKGPVERKVTRIVTPGTLTDESLLDA 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKELSH 206 + L+A+ +AW DIS+G F I+ S+ + LI+++ R+ P EI+ +E Sbjct: 116 RNDALLLALHHENGRSGLAWADISSGRFLITEVSSTEALIAELERLSPAEILVAE----- 170 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAAAAAIS 265 + E V QP FD + + + + + FG V AA + Sbjct: 171 GSFYPGVEGRSGVRY-QPPWQFDTAAARRALNTQFQTQDLRGFGCDDLDVGLAAAGCLLD 229 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y+K TQ N P I E + T+ +D+A R NLEI R L G E +L ++T Sbjct: 230 YLKDTQRGNLPHIRGMREEKLTETVLLDAATRRNLEIDRNLQGGEEHTLFSIFATTVTAM 289 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 G R + P++ T+++ R ++ I++ ++ +LK+ DV R L+R+ +G Sbjct: 290 GTRHLRRWLHRPISTLTELSARQGAVQDLIKD-YRFESVRTLLKAVGDVERILARVALGS 348 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKN---DLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 P+D+ + D + + + L + L + D L E+L P +E LS+ L ++ Sbjct: 349 ARPRDLTRLCDSL-AALPQLRVELSSIHTDQSRRLAEIAEQLNDYPDLVE-LLSTALIEN 406 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P R+GG + DG D LDE R++ + + ++ + E T + LK+ +N GY+ Sbjct: 407 PPVVIREGGVIADGYDEQLDELRNISRNASEYLLEIEQREREATGLNTLKVGYNRVHGYY 466 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IE++ + + + D ++ RQT+ N RF T EL E++ +A + AL E + Sbjct: 467 IEISRAQSDA------APDSYVRRQTLKNAERFITPELKAFEDKALSAKSRALSREKYLY 520 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 E L + +Q SL ++ + +D+ A A + P ++ ++DGRHP++ Sbjct: 521 EALVTQLQQQLASLQTSADALCNLDVFACFAERALTLDLVCPEFTDTLLLDIEDGRHPVI 580 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 E+ L+ PFIAN L ++ L+TGPNMGGKST++RQ ALI ++A +G++ Sbjct: 581 EQVLE----TPFIANGTRLDAQR-----RMLLITGPNMGGKSTYMRQTALIALLAHVGAF 631 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA + +D +F+R+GS+D+LASGRSTFMVEM ETA+IL+ AT +S V++DE+GRGT Sbjct: 632 VPAKQVQLSPIDSIFTRIGSSDDLASGRSTFMVEMTETANILHNATPRSLVLMDEVGRGT 691 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFL 802 +T DGLS+AWA L R L ATH+ ELT L + N L ++ + ++F+ Sbjct: 692 STYDGLSLAWAAAVALATQVRAFTLFATHYFELTHLPEQHDAMANVHLDATEHEDHVVFM 751 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKES 862 H + G A+ S+G+QV KLAG+P++V+S A D LK E + + P S Sbjct: 752 HNIQEGPANRSFGLQVAKLAGVPDSVLSLARDKLKQLET----GKIQVETVAP-----PS 802 Query: 863 KNN--LSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +N+ L+ +EK++ L+LDE+SP AL+ LY ++ Sbjct: 803 QNDFFLTPETHPVIEKLQNLSLDELSPRAALEILYELR 840 >gi|297205602|ref|ZP_06922998.1| DNA mismatch repair protein MutS [Lactobacillus jensenii JV-V16] gi|297150180|gb|EFH30477.1| DNA mismatch repair protein MutS [Lactobacillus jensenii JV-V16] Length = 860 Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust. Identities = 301/889 (33%), Positives = 487/889 (54%), Gaps = 47/889 (5%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + +TPMM+QY +IKS PD+ +FYR+GDFYELF DDA+ ++ L +TLT R I Sbjct: 1 MAETTPMMKQYYDIKSQYPDAFLFYRVGDFYELFEDDAVKGAQILELTLTHRSNKSENPI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PM GVP + Y+ L++ G+++A+CEQ+E P +AK +V+R +++LVTPGT+ Sbjct: 61 PMAGVPHQAVDSYVNTLVEKGYKVALCEQLEDPKQAK-----GMVKRGIIQLVTPGTMMN 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFS 200 + +SNYL +V ++ + +A+ D+STG IF + ++++++ + +E++F Sbjct: 116 EGPNGAKESNYLTSVFSTKSGFGLAYSDLSTGEIFTTHLKSFADVLNELLSLRTKEVVF- 174 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 E LS ++ L ++ N+ V+ P E Y I + +Q EK A Sbjct: 175 EGSLSDSQKDVLKKS--NITVSTP-----IQDQEKHAEVSYAIQKLS-----NQAEKDAT 222 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 + Y+ TQ + + + ++ L + ++NLE++ + +G + SL +D Sbjct: 223 KQLVIYLLVTQKRSLAHLQIAKSYEVSQYLQMSHVVQNNLELVASAKTGKKMGSLFWLLD 282 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T GGRL + +A PL ++I R + + N ++ LK D+ R Sbjct: 283 KTNTAMGGRLLKQWLARPLLSISEIEKRQKIVQAMLDNYFTREGVKDALKGVYDLERLTG 342 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILN-LFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 R+ G +++ + + + I + LF D E+L E++ L + L K + Sbjct: 343 RIAFGSANARELLQLSRSLDAIPQIQSALFESGD--EDLANFAEQIIDLSE-LAKKIKDT 399 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + ++ P DGG +R+G + LD R + K +A LQ + + T I+NLKI +N Sbjct: 400 IVENPPILTTDGGLIREGINEQLDRYRDAMNNGKTWLAQLQAQERKATGIENLKIGYNKV 459 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GYFI+V+ + + + + R+I +QT++ R+ T EL + EN I A N + +E Sbjct: 460 FGYFIQVSKGNVAKV-----PEGRYIRKQTLTGSERYITPELKEHENLILEAENKSTDLE 514 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI-VKDG 617 + F L I L IA +D + A +A+E NYCRP + I V G Sbjct: 515 YQIFSDLREYIKTFIPKLQELGNTIASLDALTSFATVAEENNYCRPSFHQDSQEIKVVAG 574 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VEK L S +I ND ++ + ++L+TGPNM GKST++RQ ALI +MA Sbjct: 575 RHPVVEKVLADGS---YIPNDIQMA-----DDTSVFLITGPNMSGKSTYMRQMALIAVMA 626 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+GS+VPA+ A + I D++F+R+G+AD+L SG+STFMVEM E L AT +S V+ DE Sbjct: 627 QVGSFVPATEAALPIFDQIFTRIGAADDLISGQSTFMVEMSEANEALQNATKRSLVLFDE 686 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGTAT DG+++A A ++YLH+ + L ATH+HELTD+ K+L N + + N Sbjct: 687 IGRGTATYDGMALAGAIVKYLHDKVGAKTLFATHYHELTDMEKTLDHLKNIHVGATQENG 746 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK----DMRLY 853 +IFLHK++PG AD SYGI V +LAGLPN V+ A +LK E + + + L+ Sbjct: 747 KLIFLHKILPGPADQSYGIHVAQLAGLPNKVLREASKMLKRLEAQGANGLEPASLQLDLF 806 Query: 854 YPEIQTKESKNN--LSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAW 900 + ++E+ ++ +S +K +E I L L + +PL ++ V +W Sbjct: 807 NEKNDSEETTSDEAISDTEKQVIEDINNLYLADKTPLEVMQL---VASW 852 >gi|197363786|ref|YP_002143423.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197095263|emb|CAR60816.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 841 Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust. Identities = 305/892 (34%), Positives = 480/892 (53%), Gaps = 73/892 (8%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IPM G+P Sbjct: 1 MMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPMAGIP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT++++ LL Sbjct: 61 HHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTISDEALLQE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKELSH 206 N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++++E Sbjct: 116 RQDNLLAAIWQDGKGYGYATLDISSGRFRLSEPADRETMAAELQRTNPAELLYAE---DF 172 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT-----AAA 261 AE +L E + ++ I +R T D G F VE AA Sbjct: 173 AEM-ALIEG---RRGLRRRPLWEFEIDTARQQLNLQFGTRDLVG-FG-VENASRGLCAAG 226 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 + Y+K TQ + P I E Q ++ +D+A R NLEI + L+G E +L +D + Sbjct: 227 CLLQYVKDTQRTSLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGVENTLAAVLDCT 286 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +T G R+ + P+ ++ + R +I ++ +Q +L+ D+ R L+RL Sbjct: 287 VTPMGSRMLKRWLHMPVRNTDILRERQQTIGALQDT---VSELQPVLRQVGDLERILARL 343 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP-QSLEKT------ 434 + P+D+A +R + LPE L +E + P Q+L K Sbjct: 344 ALRTARPRDLARMRHAFQQ------------LPE-LHAQLETVGSAPVQALRKKMGDFAE 390 Query: 435 ----LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L + D P RDGG + G LDE R+L D + + L+++ E T + Sbjct: 391 LRDLLERAIIDAPPVLVRDGGVIAPGYHEELDEWRALADGATDYLDRLEIRERERTGLDT 450 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ +N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + Sbjct: 451 LKVGYNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPELKEYEDKVLTS 504 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 AL +E + ++ L + ++ L ++ +A +D+ + LA A NY P + Sbjct: 505 KGKALALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLAERAWTLNYTCPTFTDKP 564 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNMGGKST++RQ Sbjct: 565 GIRITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQT 615 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT Sbjct: 616 ALIALLAYIGSYVPAQNVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEN 675 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L Sbjct: 676 SLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHL 735 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH---NQ 847 + + I F+H V G A SYG+ V LAG+P VI RA L+ E + + Q Sbjct: 736 DALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESISPNAAATQ 795 Query: 848 KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 D T+ S + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 796 VD--------GTQMSLLAAPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 839 >gi|260881009|ref|ZP_05403375.2| DNA mismatch repair protein MutS [Mitsuokella multacida DSM 20544] gi|260850167|gb|EEX70174.1| DNA mismatch repair protein MutS [Mitsuokella multacida DSM 20544] Length = 876 Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust. Identities = 297/833 (35%), Positives = 451/833 (54%), Gaps = 53/833 (6%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 L TPMM+QY+ K NP +++F+R+GDFYE+FF+DA L S+ LG+TLT R K G+D Sbjct: 9 LMEMTPMMQQYLATKEQNPGAILFFRLGDFYEMFFEDAKLVSKELGLTLTSRSK--GQDA 66 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H A Y+ KL+K G+++AI EQI P K L +R V+++VTPGT+ Sbjct: 67 PMCGVPYHAAETYVNKLVKRGYKVAIAEQIGDP------KAKGLTKREVIKVVTPGTILS 120 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTG--IFKISTSNH--DRLISDIMRIDPREI 197 + L T +NY+ + + +A DISTG + I + L+ ++ R+ E+ Sbjct: 121 ESALQATQNNYIALIYETGEKIVLAGADISTGECFYGIYEGGNRLQMLLDELYRLMMPEL 180 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFF------DHSISESRIADYYNITTVDTFGS 251 + K + K A+ P+ F H + E RI ++++ T Sbjct: 181 LIVGKPSFASALKEF------AALRLPHCSFTPIAEVSHHV-EDRIVEHFDAATRP---- 229 Query: 252 FSQVE-KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGS 309 +Q E K A A + Y+ +T + + D L +D+ NLEI R L G Sbjct: 230 -AQSEAKEAVATLLDYLHETVRTDLTQLNQLMYLDASENLVVDTYTLRNLEITRNLRDGG 288 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 ++ +LL +D++ T G RL + + PL I RLD++ + + L +++ + Sbjct: 289 KKNTLLDVLDFTETAMGSRLLKKWLEYPLLSIAGITQRLDAVGELVGDFSLRGGVREGCR 348 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKL 427 D R L+R+++G +D+ ++ +R GI K+ + ++ VE L Sbjct: 349 EIHDFERLLTRIEVGTANARDLIALKISLRCLPGIREKLQGAKSSMLKQAEAKVETFDVL 408 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 LE+ + +D R+GG ++ G + LDE R + SK ++ ++ + E+T Sbjct: 409 VDLLERAIV----EDPGISLREGGIIKSGYNEELDEYRRISHDSKAMLQEIEEREKEQTG 464 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 IK LKI +N GY+IEV S A + DR+I +QT++N R+ T EL + E +I Sbjct: 465 IKALKIGYNKVFGYYIEVRHSGADRVP------DRYIRKQTLANAERYITEELKEFETKI 518 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 A + IE F + I + + IA++D+ +LA A NY RP + Sbjct: 519 LGAQEKIVNIEYNLFTEVRETIKAHLTEIQQTAHEIALVDVLASLAEAASSYNYVRPQMR 578 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 +KDGRHP+VE+ L + F+ ND L D ++ L+TGPNM GKST++ Sbjct: 579 TDGVIDIKDGRHPLVERIL---TRDLFVPNDAHL----DHQDCEIMLITGPNMAGKSTYM 631 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ AL+ +MAQ+GS++PA A I VD++F+R+G++D+L SG+STFMVEM E A IL A Sbjct: 632 RQVALLTLMAQIGSFIPAREASISPVDRIFTRIGASDDLVSGQSTFMVEMNEVAQILKYA 691 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 T S VILDEIGRGT+T DG+SIA A IE++ + + L ATH+HELTDL + N Sbjct: 692 TKDSLVILDEIGRGTSTFDGMSIARAVIEHIEKKVHAKTLFATHYHELTDLEDD--KIKN 749 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + V + + FL +++PG AD SYGI V +LAGLP +V SRA +IL E Sbjct: 750 FCVAVKERGNQVAFLRRIVPGAADKSYGIHVARLAGLPKSVTSRAEEILAMLE 802 >gi|325133328|gb|EGC55994.1| DNA mismatch repair protein MutS [Neisseria meningitidis M13399] gi|325207053|gb|ADZ02506.1| DNA mismatch repair protein MutS [Neisseria meningitidis M04-240196] Length = 864 Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust. Identities = 304/889 (34%), Positives = 474/889 (53%), Gaps = 54/889 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM+QY+ IK+ + D LVFYRMGDFYE+FFDDA+ A++ L ITLT RG+ G+ + M G Sbjct: 7 SPMMQQYLGIKAQHTDKLVFYRMGDFYEMFFDDAVEAAKLLDITLTTRGQVDGEPVKMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ +L+K+G +AICEQ+ + K V R VVR+VTPGTLT+ LL Sbjct: 67 VPFHAAEQYLARLVKLGKSVAICEQV-----GEVGAGKGPVERKVVRIVTPGTLTDSALL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 ++N ++AV+ + +AW + +G FK + D+L ++ R+ EI+ + Sbjct: 122 EDKETNRIVAVSPDKKYIGLAWASLQSGEFKTKLTTVDKLDDELARLQAAEILLPDS--- 178 Query: 206 HAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQ---VEKTAAA 261 K+ + V + N + F E + +Y+ + FG + V AA Sbjct: 179 ----KNAPQLQTASGVTRLNAWQFAADAGEKLLTEYFGCQDLRGFGLDGKEHAVAIGAAG 234 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 A ++YI+ TQ + + E + +D+A R NLEI +TLSG + +L+ T+D Sbjct: 235 ALLNYIRLTQNLMPQHLDGLSLETDSQYIGMDAATRRNLEITQTLSGKKSPTLMSTLDLC 294 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G RL A + PL + I R +++ P+Q LK+ D+ R +R+ Sbjct: 295 ATHMGSRLLALWLHHPLRNRAHIRARQEAVAALESQ---YKPLQCRLKNIADIERIAARI 351 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL-PQSLE--KTLSSM 438 +G P+D+A +RD + I DL +E LK + P++L + L Sbjct: 352 AVGNARPRDLASLRDSLFELAQI-------DLSANGSSLLETLKAVFPENLSTAEQLRQA 404 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + + + +DG + G LDE R +++ + L+ K E T + LK++ N Sbjct: 405 ILPEPSVWLKDGNVINHGFHPELDELRRIQNHGDEFLLDLEAKERERTGLSTLKVEFNRV 464 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 G++IE++ + A D + RQT+ N RF T EL E+++ A AL +E Sbjct: 465 HGFYIELSKTQAEQAPAD------YQRRQTLKNAERFITPELKAFEDKVLTAQEQALALE 518 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F+ + + L A++ A +D+ + LAKE+N+ RP + +++GR Sbjct: 519 KQLFDGVLKNLQTALPQLQKAAKAAAALDVLSTFSALAKERNFVRPEFADYPVIHIENGR 578 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ ++ F AN DL + +L LLTGPNMGGKST++RQ ALIV++A Sbjct: 579 HPVVEQQVRH-----FTANHTDLD-----HKHRLMLLTGPNMGGKSTYMRQVALIVLLAH 628 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 G +VPA A IG +D++F+R+G++D+LAS RSTFMVEM ETA IL+ AT QS V++DE+ Sbjct: 629 TGCFVPADAATIGPIDQIFTRIGASDDLASNRSTFMVEMSETAYILHHATEQSLVLMDEV 688 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGL++A A E+L + N+ L ATH+ ELT L ++ N L + + Sbjct: 689 GRGTSTFDGLALAHAVAEHLLQKNKSFSLFATHYFELTYLPEAHAAAVNMHLSALEQGQD 748 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY---- 854 I+FLH++ PG A SYGI V KLAGLP + A L E N+ + ++ Sbjct: 749 IVFLHQIQPGPAGKSYGIAVAKLAGLPVRALKSAQKHLNGLENQAAANRPQLDIFSTMPS 808 Query: 855 -----PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P + K+ + + ++ L+ D ++P AL LY +K Sbjct: 809 EKGDEPNVGNFVDKSEEKHFEGILAAALEKLDPDSLTPREALSELYRLK 857 >gi|258452594|ref|ZP_05700600.1| DNA mismatch repair protein mutS [Staphylococcus aureus A5948] gi|257859812|gb|EEV82654.1| DNA mismatch repair protein mutS [Staphylococcus aureus A5948] Length = 872 Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust. Identities = 318/924 (34%), Positives = 490/924 (53%), Gaps = 111/924 (12%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPMM+QY++IKS D L+F+R+GDFYE+F++DA ASR L ITLTKR I Sbjct: 1 MSNVTPMMQQYLKIKSEYQDCLLFFRLGDFYEMFYEDAKEASRVLEITLTKRDAKKENPI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A+ YI L+ G+++AICEQ+E P + K +VRR VVR+VTPGT+ E Sbjct: 61 PMCGVPYHSADSYIDTLVNNGYKVAICEQMEDP-----KQTKGMVRREVVRIVTPGTVME 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD-RLISDIMRIDPREIIFS 200 + +NY+++ + E A+++ D+STG K++ N + L+++I I+P E++ + Sbjct: 116 QGGVDDKQNNYILSFVMNQPEIALSYCDVSTGELKVTHFNDEATLLNEITTINPNEVVIN 175 Query: 201 E-------------------KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYY 241 + +E +E S+ +T + + D+ I ++ D Sbjct: 176 DNISDNLKRQINMVTETITVRETLSSEIYSVNQTEHKLMYQATQLLLDY-IHHTQKRD-- 232 Query: 242 NITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLE 301 S +E AAI Y+K +D A+ NLE Sbjct: 233 ----------LSHIEDVVQYAAIDYMK-----------------------MDFYAKRNLE 259 Query: 302 ILRTLS-GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL 360 + ++ S++ +LL +D + T G R + I PL +I RLD ++ F + I Sbjct: 260 LTESIRLKSKKGTLLWLMDETKTPMGARRLKQWIDRPLISKEQIEARLDIVDEFSAHFIE 319 Query: 361 INPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGA 420 + ++ L D+ R + R+ G +D+ ++ I NI L N + + Sbjct: 320 RDALRTYLNQVYDIERLVGRVSYGNVNARDLIQLKHSISEIPNIKALL--NSMNQNTLVQ 377 Query: 421 VEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 V +L+ L L+ L L ++ P +DGG + G + LDE K +A LQ Sbjct: 378 VNQLEPLDDLLD-ILEQSLVEEPPISVKDGGLFKVGFNTQLDEYLEASKNGKTWLAELQA 436 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 K + T IK+LKI N GYFIE+T ++ L+ S+ ++ +QT+SN RF T EL Sbjct: 437 KERQRTGIKSLKISFNKVFGYFIEITRAN---LQNFEPSEFGYMRKQTLSNAERFITDEL 493 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 + E+ I A + A+ +E + F L + + +E L +++I+ +D + A +A++ N Sbjct: 494 KEKEDIILGAEDKAIELEYQLFVQLREEVKKYTERLQQQAKIISELDCLQSFAEIAQKYN 553 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 Y RP + + + RHP+VE+ + ++ N+C L N ++L+TGPNM Sbjct: 554 YTRPSFSENKTLELVESRHPVVERVM---DYNDYVPNNCRLD-----NETFIYLITGPNM 605 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GKST++RQ A+I IMAQMG+YVP A + I D++F+R+G+AD+L SG+STFMVEM+E Sbjct: 606 SGKSTYMRQVAIISIMAQMGAYVPCKEAVLPIFDQIFTRIGAADDLVSGKSTFMVEMLEA 665 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 L AT S +I DEIGRGT+T DGL++A A IEY+ ET+ + L +TH+HELT L + Sbjct: 666 QKALTYATEDSLIIFDEIGRGTSTYDGLALAQAMIEYVAETSHAKTLFSTHYHELTTLDQ 725 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 +L N + ++ +IFLHKV G D SYGIQV KLA LP VISRA IL FE Sbjct: 726 ALPSLKNVHVAANEYKGELIFLHKVKDGAVDDSYGIQVAKLADLPEKVISRAQVILSEFE 785 Query: 841 ------------KLYHH----NQKDMRLYYPEIQTKESKNNLSKND------KLF----- 873 K+ + NQ+++ L +E+ + LS+ D LF Sbjct: 786 ASAGKKSSISNLKMVENEPEINQENLNL-----SVEETTDTLSQKDFEQASFDLFENDQE 840 Query: 874 --VE-KIKCLNLDEMSPLTALKTL 894 +E +IK LNL M+P+ AL L Sbjct: 841 SEIELQIKNLNLSNMTPIEALVKL 864 >gi|237805143|ref|YP_002889297.1| DNA mismatch repair protein MutS [Chlamydia trachomatis B/TZ1A828/OT] gi|231273443|emb|CAX10358.1| DNA mismatch repair protein [Chlamydia trachomatis B/TZ1A828/OT] Length = 820 Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust. Identities = 299/828 (36%), Positives = 467/828 (56%), Gaps = 43/828 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+Q+ + K D L+ +R+G+FYE FFDDAL+ ++ L ITLT+R +++PM G Sbjct: 6 TPMMQQWHQCKEQAGDCLLLFRLGEFYEAFFDDALILAQNLDITLTQR-----QNVPMSG 60 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P + Y+ +L+ G ++AI EQ ++ G+K LV R + RL+TPG L LL Sbjct: 61 IPATCLDGYVDRLVSRGFKVAIAEQADN-----TEGSKGLVPRTINRLITPGALLSSSLL 115 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREIIFSEKEL 204 +NY++A+ ++ + + ++ +D+S G F ++ ++ + LI I R+ P E+ L Sbjct: 116 PEKANNYVLAINQVGSLYGLSCLDLSIGTFLVAEYDNTKDLIEAICRLAPTEL------L 169 Query: 205 SHAEY--------KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 SHA++ K L + L + F++ + ++ + ++++D FG V Sbjct: 170 SHAKFYQKNEAVIKQLQQHLRITLSEYVSWAFEYQSATKKLYTCFQVSSLDGFGLQGLVP 229 Query: 257 K-TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS-REQSL 314 AA A +SYI+ ++ + P+ Q L ID A+++NLE+L + G R+ SL Sbjct: 230 AINAAGALLSYIQDKLLLPISHLSIPKIYGQQKHLLIDKASQTNLELLSPIHGEHRKGSL 289 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L+ ++ + T GGRL + +P D +I R DS+ FF+Q L ++ L D+ Sbjct: 290 LQVMERTSTPMGGRLLRNTLINPFYDLKEITLRQDSVEFFLQQADLRKILKHQLSCVRDL 349 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R +++ PKDI +RD + S +I + LPE L L SL KT Sbjct: 350 ERLATKISTSLATPKDIGTLRDSLLSCTHIADNLQNCALPEFLENKFLIAPPLC-SLIKT 408 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 LS+ L +LP +G + L R++++ SK I Q + ET IK LK+ Sbjct: 409 LSTELIQELPLKVSEGNIFANHYHPDLLRLRNIKENSKSWILEYQERIRNETGIKKLKVC 468 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 + LGY+IEV S+ A L K+ FI RQ+ + RFTT EL ++ + + + Sbjct: 469 YAQALGYYIEVASNLAPQLPKE------FIRRQSRLHAERFTTQELQQFQDEVFSVEDKL 522 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 +E + F+ L I+E + + S +A +D ++LA LA E +Y RP++D+S + Sbjct: 523 QTLETKLFKELCFYIVEHRDLILKLSTAVADLDYVVSLAELAAEYDYRRPLVDHSDALSI 582 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 G HP+ L + + FI ND + + + LLTGPNM GKST++RQ AL+V Sbjct: 583 TKGMHPVALTLLDKGT---FIPNDTVMHSAQTR----MILLTGPNMAGKSTYIRQIALLV 635 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMAQMGS++PA AHIGIVDK+F+R+G+ DNL+ G STFMVEM ETA+IL+ AT++S VI Sbjct: 636 IMAQMGSFIPARSAHIGIVDKIFTRIGAGDNLSKGMSTFMVEMAETANILHNATDRSLVI 695 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQV 792 LDEIGRGT+T DGL+IA A +E+L T+ + + L ATH+ ELT+L + N V Sbjct: 696 LDEIGRGTSTYDGLAIAQAVVEFLLFTDGKKAKTLFATHYKELTELEMHCQHVENFHAMV 755 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 +++ IF+++++ G + S+GI V KLAG P +V+SRA IL FE Sbjct: 756 KENSGQPIFMYEIVKGHSKKSFGIHVAKLAGFPLSVVSRAQQILHQFE 803 >gi|150009585|ref|YP_001304328.1| DNA mismatch repair protein MutS [Parabacteroides distasonis ATCC 8503] gi|189083164|sp|A6LG92|MUTS_PARD8 RecName: Full=DNA mismatch repair protein mutS gi|149938009|gb|ABR44706.1| putative DNA mismatch repair protein MutS [Parabacteroides distasonis ATCC 8503] Length = 870 Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust. Identities = 293/892 (32%), Positives = 484/892 (54%), Gaps = 53/892 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M+QY +IK+ +PD+++ +R+GDFYE++ +DA++ + LGI TKR +G+ + M G Sbjct: 7 TPLMKQYFDIKAKHPDAILLFRVGDFYEMYGEDAVIGAEILGIVQTKRANGVGQHVEMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KL++ G R+AIC+Q+E P KK LV+R + LVTPG D +L Sbjct: 67 FPHHALDSYLPKLVRAGKRVAICDQLEDPKLTKK-----LVKRGITELVTPGVSINDNIL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 + ++N+L ++ + I+++DISTG F + + D + + P+E++ + Sbjct: 122 NHKENNFLASIHFAKEVCGISFLDISTGEFMTAEGSIDYIDKLLNNFSPKEVL-----IE 176 Query: 206 HAEYKSLFETLGNVAVAQPNVF--------FDHSISESRIADYYNITTVDTFG-SFSQVE 256 K E G P F F S +E R+ ++ + FG ++ Sbjct: 177 RGNKKRFEEAFG------PRFFIFELDDWIFTTSAAEDRLLKHFETKNLKGFGVQHLKLG 230 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 A+ A + Y+ +TQ + I R + + +D +LE++ T++ SLL Sbjct: 231 IIASGAILYYLDQTQHTHISHITALSRIEEDRYVRLDKFTVRSLELVGTMN-DEGTSLLD 289 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 ID +I+ G R+ I PL D I R + +++F + P + L+ D+ R Sbjct: 290 VIDKTISPMGSRMLRRWILFPLKDVKPIQERQEVVDYFFREPETKELLDTQLEQIGDLER 349 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 +S++ +GR P+++ ++ +R+ I + + P R E+L + + Sbjct: 350 IISKVAVGRVSPREVVQLKVALRAIEPIKEACMASGEPSLCRIG-EQLNACAL-IRDRIE 407 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 +++D P+ GG + G + LD+ R++ K + +Q + E T I +LKI N Sbjct: 408 KEINNDPPSLVNKGGIIAKGVNEELDDLRAIAYSGKDYLLKVQQREIELTGIPSLKIAFN 467 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 N GY+IEV ++ + + +I +QT+ N R+ T EL + E +I A L Sbjct: 468 NVFGYYIEVRNTHKDKVPAN------WIRKQTLVNAERYITEELKEYEEKILGAEEKILA 521 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E F L A+ E + + +I ID ++ A A+ Y RP++ +S +K Sbjct: 522 LETRLFNELVLALTEYIPPIQMNANLIGRIDCLLSFAKAAEANKYIRPVVSDSDKIDIKG 581 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP++EK L +P+IAND L D ++ ++TGPNM GKS LRQ ALI +M Sbjct: 582 GRHPVIEKQLPL--GEPYIANDVYL----DDEKQQIIIITGPNMAGKSALLRQTALITLM 635 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+G +VPA AHIGIVDK+F+RVG++DN++ G STFMVEM E + ILN T++S V+ D Sbjct: 636 AQIGCFVPAESAHIGIVDKIFTRVGASDNISVGESTFMVEMNEASDILNNMTSRSLVLFD 695 Query: 737 EIGRGTATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 E+GRGT+T DG+SIAWA +EY+HE + + L ATH+HEL ++ ++ KR N + V + Sbjct: 696 ELGRGTSTYDGISIAWAIVEYIHEHPNAKAKTLFATHYHELNEMERAFKRIKNYNVSVKE 755 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 +IFL K+IPG ++HS+GI V K+AG+P +++ R+ +ILK E N+++ Sbjct: 756 VGNKVIFLRKLIPGGSEHSFGIHVAKMAGMPKSIVKRSNEILKQLES---ENRQEGITGK 812 Query: 855 P--EIQTKESKNNLS---KNDKLFVE---KIKCLNLDEMSPLTALKTLYAVK 898 P I + LS +D + + +IK L+++ ++PL AL L +K Sbjct: 813 PVKAIASAAEGYQLSFFQLDDPVLSQVRDEIKNLDVNNLTPLEALNKLIEIK 864 >gi|325267293|ref|ZP_08133955.1| DNA mismatch repair protein MutS [Kingella denitrificans ATCC 33394] gi|324981230|gb|EGC16880.1| DNA mismatch repair protein MutS [Kingella denitrificans ATCC 33394] Length = 923 Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust. Identities = 311/883 (35%), Positives = 482/883 (54%), Gaps = 47/883 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +K +PMM+QY+ IK+ + D LVFYRMGDFYELFFDDA+ A++ L ITLT RG+ G+ Sbjct: 80 TIKPLSPMMQQYLAIKAEHQDKLVFYRMGDFYELFFDDAVKAAKLLDITLTTRGQCNGEP 139 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 I M GVP H A Y+ KL+K+G +AICEQ+ + G +V R VVR+VT GTLT Sbjct: 140 IKMAGVPYHAAEQYLVKLVKLGESVAICEQV------GEVGAGKVVERKVVRIVTAGTLT 193 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 + LL +N + A+ + + A+AW + +G F + +RL ++ R+ E+ Sbjct: 194 DSALLEDKQTNRIAALFAGKKQAALAWAALESGEFCVKIIPIERLADELARLQVSEL--- 250 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFG---SFSQVE 256 L+ A +K L E + V++ + + F + + + DY+ + FG + Sbjct: 251 ---LADAAFK-LPENCPKIPVSRLHHWQFAPDAAFALLTDYFGCQDLRAFGLDLAQHSAA 306 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 +AA A ++Y+K TQ P + E + +++A R NLE+ +TL G +L Sbjct: 307 ISAAGALLNYLKTTQNQLPPHMDALVLEHESQFVAMNAATRRNLEVTQTLQGQPAPTLFS 366 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D +T G RL A + PL I RLD++ ++ + + LK D+ R Sbjct: 367 VLDNCMTNMGSRLLAHWLHHPLRHRPHIQARLDAVEALRRHGG--DDVAGCLKKMADIER 424 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 +R+ +G P+D++ +RD + S + ++L ++ L + L G + Q + K L Sbjct: 425 IAARIALGSARPRDLSALRDSL-SVLQDIHL-PQSSLLDTLAGCFPET----QGVAKLLQ 478 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + L + + +DGG + G A LDE R L+ + L+ + + T++ LK+++N Sbjct: 479 AALLPEPSVWLKDGGVINHGYHAELDELRHLQTHGDDALRELEERERQRTQLSTLKVEYN 538 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 G++IE++ + A E+ + RQT+ N RF T EL E++ A AL Sbjct: 539 RVHGFYIELSKNQAE------EAPADYQRRQTLKNTERFITPELKAFEDKFLAAQERALA 592 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E FE L ++ + + A++ A +D+ A A+E+ Y P + + ++ Sbjct: 593 LEKTLFEQLLGSLQTELPRIQKAAKAAATLDVLDGFARTARERQYTMPEFCSGSEIHIRA 652 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE+ + F ND DL + KL LLTGPNMGGKST++RQ ALIV++ Sbjct: 653 GRHPVVERQVAH-----FTPNDTDLD-----EARKLCLLTGPNMGGKSTYMRQTALIVLL 702 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A GS+VPA +A IG +D++F+R+G++D+LA RSTFMVEM ETA IL+ AT QS V++D Sbjct: 703 AHTGSFVPAEHAKIGSIDQIFTRIGASDDLAGNRSTFMVEMSETAYILHNATPQSLVLMD 762 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 E+GRGT+T DGL++A A E+L + N L ATH+ ELT L N+ L + Sbjct: 763 EVGRGTSTFDGLALAHAAAEHLLQKNGSLSLFATHYFELTQLPNQYAAAFNSHLSALEQG 822 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 I+FLH V G A+ SYGI V KLAGLP + A LK E+ Q D+ PE Sbjct: 823 HDIVFLHNVQNGAAEKSYGIAVAKLAGLPARALKAAQRQLKQLEQQTADRQLDLFAAPPE 882 Query: 857 IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 E+ +++N L +++ +N DE++P AL LY +KA Sbjct: 883 ----EADAPVAENPVL--QQLAAVNPDELTPRQALDVLYRLKA 919 >gi|227894650|ref|ZP_04012455.1| MutS protein [Lactobacillus ultunensis DSM 16047] gi|227863545|gb|EEJ70966.1| MutS protein [Lactobacillus ultunensis DSM 16047] Length = 866 Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust. Identities = 293/891 (32%), Positives = 487/891 (54%), Gaps = 51/891 (5%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S+TPMM QY EIK PD+ +FYR+GDFYELF DDA+ ++ L +TLT R IPM Sbjct: 5 STTPMMEQYYEIKKQYPDAFLFYRVGDFYELFEDDAVKGAQILELTLTHRSNKTKNPIPM 64 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP + Y+ L++ G+++A+CEQ+E P +AK +V+R +++LVTPGT+ + Sbjct: 65 AGVPHLAVDTYVNTLVEKGYKVALCEQLEDPKKAK-----GMVKRGIIQLVTPGTMMSEG 119 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEK 202 DSNYL +V ++ + +A+ D+STG I+ + + + ++++ + RE++++ Sbjct: 120 PNDAKDSNYLTSVVTTKSVFGLAYSDLSTGEIYATHLKSFEAVSNELLSLRTREVVYNG- 178 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 E F N+ V++P S + N+T ++ EK A Sbjct: 179 --PLTEQNKDFMHKANITVSEPTPIEGEHAEISYVEQ--NLT--------NKAEKEATKQ 226 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYS 321 + Y+ TQ + + + ++ L + ++NLE++ + +G + SL +D + Sbjct: 227 LVGYLLSTQKRSLAHLQIAKSYEVNQYLQMSHTVQNNLELIASAKTGKKMGSLFWVLDKT 286 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T GGRL + +A PL + +IN R + + + LK D+ R R+ Sbjct: 287 HTAMGGRLLKQWLARPLLNVDEINHREEMVQALLDGYFTRENAIDALKGVYDLERLTGRI 346 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKND--LPEELRGAVEKLKKLPQSLEKTLSSML 439 G +++ + +++ IL+ ++D + E+ ++ LK + + +S+ L Sbjct: 347 AFGNVNARELLQLSRSLQAVPVILDALNQSDSDVLEDFAKKIDPLK----GVAEMISTTL 402 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 D P +GG +RDG D LD R + K+ +A ++ ++T I+NLK+ +N Sbjct: 403 VKDPPLLTTEGGLIRDGVDKQLDRYRDAMNNGKKWLAQMEADERQKTGIENLKVGYNKVF 462 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+I+V++ + S + DR+ +QT++N R+ T EL + EN I A + +E Sbjct: 463 GYYIQVSNGNKSKV-----PLDRYTRKQTLTNAERYITPELKEHENLILEAQTRSTDLEY 517 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI-VKDGR 618 + F L + + +L +A +D+ A +A++ NYCRP I V +GR Sbjct: 518 DLFVKLREEVKKYIPALQKLGSQLAALDVYCGFATVAEQNNYCRPHFHTDNQDIDVVNGR 577 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VEK + ++ +I ND + D ++L+TGPNM GKST++RQ ALI IMAQ Sbjct: 578 HPVVEKVM---TAGSYIPNDVKMDTGTD-----IFLITGPNMSGKSTYMRQMALIAIMAQ 629 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA A + + D++F+R+G+AD+L SG+STFMVEM E L AT +S V+ DEI Sbjct: 630 IGSFVPADSADLPVFDQIFTRIGAADDLISGQSTFMVEMSEANDALQYATKRSLVLFDEI 689 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGTAT DG+++A A ++YLH+ + L ATH+HELTDL ++L N + ++ N Sbjct: 690 GRGTATYDGMALAGAIVKYLHDKVGAKALFATHYHELTDLDETLDHLKNIHVGATEENGK 749 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE----KLYHHNQKDMRLYY 854 +IFLHK++PG AD SYGI V +LAGLP V+ A +LK E +L +Q+ + L+ Sbjct: 750 LIFLHKILPGPADQSYGIHVAQLAGLPRAVLREATKLLKRLEAQGSELAPVSQQ-LDLFA 808 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPL-----TALKTLYAVKAW 900 ++ +++ ++NDK + + LD++S L T L+ + V W Sbjct: 809 EPVENTDNEEQ-TQNDKPAITDAEQDVLDDISNLYLADKTPLQIMQMVADW 858 >gi|255311627|ref|ZP_05354197.1| DNA mismatch repair protein MutS [Chlamydia trachomatis 6276] gi|255317928|ref|ZP_05359174.1| DNA mismatch repair protein MutS [Chlamydia trachomatis 6276s] Length = 820 Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust. Identities = 298/828 (35%), Positives = 468/828 (56%), Gaps = 43/828 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+Q+ + K D L+ +R+G+FYE FFDDAL+ ++ L ITLT+R +++PM G Sbjct: 6 TPMMQQWHQCKEQAGDCLLLFRLGEFYEAFFDDALILAQNLDITLTQR-----QNVPMSG 60 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P + Y+ +L+ G ++AI EQ ++ G+K LV R + RL+TPG L LL Sbjct: 61 IPATCLDGYVDRLVSRGFKVAIAEQADN-----TEGSKGLVPRTINRLITPGALLSSSLL 115 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREIIFSEKEL 204 +NY++A+ ++ + + ++ +D+S G F ++ ++ + LI I R+ P E+ L Sbjct: 116 PEKANNYVLAINQVGSLYGLSCLDLSIGTFLVAEYDNTKDLIEAICRLAPTEL------L 169 Query: 205 SHAEY--------KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 SHA++ K L + L + F++ + ++ + ++++D FG V Sbjct: 170 SHAKFYQKNEAVIKQLQQHLRITLSEYVSWAFEYQSATKKLYTCFQVSSLDGFGLQGLVP 229 Query: 257 K-TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SL 314 AA A +SYI+ ++ + P+ Q L ID A+++NLE+L + G + SL Sbjct: 230 AINAAGALLSYIQDKLLLPISHLSIPKIYGQQKHLLIDKASQTNLELLSPIHGEHGKGSL 289 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L+ ++ + T GGRL + +P D +I R DS+ FF+Q L +++ L D+ Sbjct: 290 LQVMERTSTPMGGRLLRNTLINPFYDLKEITLRQDSVEFFLQQADLRKILKRQLSCVRDL 349 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R +++ PKDI +RD + S +I++ LPE L L SL KT Sbjct: 350 ERLATKISTSLATPKDIGTLRDSLLSCTHIVDNLQNCALPEFLENKFLIAPPLC-SLIKT 408 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 LS+ L +LP +G + L R++++ SK I Q + ET IK LK+ Sbjct: 409 LSTELIQELPLKVSEGNIFANHYHPDLLRLRNIKENSKSWILEYQERIRNETGIKKLKVC 468 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 + LGY+IEV S+ A L K+ FI RQ+ + RFTT EL ++ + + + Sbjct: 469 YAQALGYYIEVASNLAPQLPKE------FIRRQSRLHAERFTTQELQQFQDEVFSVEDKL 522 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 +E + F+ L I+E + + S +A +D ++LA LA E +Y RP++D+S + Sbjct: 523 QTLETKLFKELCFYIVEHRDLILKLSTAVADLDYVVSLAELAAEYDYRRPLVDHSDALSI 582 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 G HP+ L + + FI ND + + + LLTGPNM GKST++RQ AL+V Sbjct: 583 TKGMHPVALTLLDKGT---FIPNDTVMHSAQTR----MILLTGPNMAGKSTYIRQIALLV 635 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMAQMGS++PA AHIGIVDK+F+R+G+ DNL+ G STFMVEM ETA+IL+ AT++S VI Sbjct: 636 IMAQMGSFIPARSAHIGIVDKIFTRIGAGDNLSKGMSTFMVEMAETANILHNATDRSLVI 695 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQV 792 LDEIGRGT+T DGL+IA A +E+L T+ + + L ATH+ ELT+L + N V Sbjct: 696 LDEIGRGTSTYDGLAIAQAVVEFLLFTDGKKAKTLFATHYKELTELEMHCQHVENFHAMV 755 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 +++ IF+++++ G + S+GI V KLAG P +V+SRA IL FE Sbjct: 756 KENSGQPIFMYEIVKGHSKKSFGIHVAKLAGFPLSVVSRAQQILHQFE 803 >gi|15926878|ref|NP_374411.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus N315] gi|21282907|ref|NP_645995.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus MW2] gi|49486134|ref|YP_043355.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus MSSA476] gi|57634628|ref|NP_371819.2| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus Mu50] gi|57651865|ref|YP_186171.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus COL] gi|148267785|ref|YP_001246728.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus JH9] gi|150393844|ref|YP_001316519.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus JH1] gi|151221416|ref|YP_001332238.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus str. Newman] gi|156979616|ref|YP_001441875.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus Mu3] gi|161509461|ref|YP_001575120.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142529|ref|ZP_03567022.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253316432|ref|ZP_04839645.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731914|ref|ZP_04866079.1| MutS protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|255006082|ref|ZP_05144683.2| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795649|ref|ZP_05644628.1| DNA mismatch repair protein MutS [Staphylococcus aureus A9781] gi|258416052|ref|ZP_05682320.1| DNA mismatch repair protein MutS [Staphylococcus aureus A9763] gi|258421635|ref|ZP_05684559.1| DNA mismatch repair protein MutS [Staphylococcus aureus A9719] gi|258434791|ref|ZP_05688865.1| DNA mismatch repair protein mutS [Staphylococcus aureus A9299] gi|258444633|ref|ZP_05692962.1| DNA mismatch repair protein mutS [Staphylococcus aureus A8115] gi|258447534|ref|ZP_05695678.1| DNA mismatch repair protein mutS [Staphylococcus aureus A6300] gi|258449376|ref|ZP_05697479.1| DNA mismatch repair protein mutS [Staphylococcus aureus A6224] gi|258454755|ref|ZP_05702719.1| DNA mismatch repair protein mutS [Staphylococcus aureus A5937] gi|262051355|ref|ZP_06023578.1| DNA mismatch repair protein [Staphylococcus aureus 930918-3] gi|269202912|ref|YP_003282181.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus ED98] gi|282892783|ref|ZP_06301018.1| DNA mismatch repair protein MutS [Staphylococcus aureus A8117] gi|282920539|ref|ZP_06328260.1| DNA mismatch repair protein MutS [Staphylococcus aureus A9765] gi|282927637|ref|ZP_06335253.1| DNA mismatch repair protein MutS [Staphylococcus aureus A10102] gi|284024288|ref|ZP_06378686.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus 132] gi|294848291|ref|ZP_06789038.1| DNA mismatch repair protein MutS [Staphylococcus aureus A9754] gi|295406232|ref|ZP_06816039.1| DNA mismatch repair protein MutS [Staphylococcus aureus A8819] gi|296274853|ref|ZP_06857360.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus MR1] gi|297244460|ref|ZP_06928343.1| DNA mismatch repair protein MutS [Staphylococcus aureus A8796] gi|300912140|ref|ZP_07129583.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus TCH70] gi|304381140|ref|ZP_07363793.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|44888235|sp|Q931S8|MUTS_STAAM RecName: Full=DNA mismatch repair protein mutS gi|54037876|sp|P65494|MUTS_STAAW RecName: Full=DNA mismatch repair protein mutS gi|54041517|sp|P65493|MUTS_STAAN RecName: Full=DNA mismatch repair protein mutS gi|56749199|sp|Q6G9R8|MUTS_STAAS RecName: Full=DNA mismatch repair protein mutS gi|61213893|sp|Q5HGD6|MUTS_STAAC RecName: Full=DNA mismatch repair protein mutS gi|110810498|sp|P0C1S1|MUTS_STAAU RecName: Full=DNA mismatch repair protein mutS gi|166232141|sp|A7X1T6|MUTS_STAA1 RecName: Full=DNA mismatch repair protein mutS gi|172048870|sp|A6QGJ4|MUTS_STAAE RecName: Full=DNA mismatch repair protein mutS gi|189083196|sp|A6U1B4|MUTS_STAA2 RecName: Full=DNA mismatch repair protein mutS gi|189083197|sp|A5ISH9|MUTS_STAA9 RecName: Full=DNA mismatch repair protein mutS gi|189083198|sp|A8Z1W6|MUTS_STAAT RecName: Full=DNA mismatch repair protein mutS gi|13701095|dbj|BAB42390.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus N315] gi|21204346|dbj|BAB95043.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus MW2] gi|32731679|gb|AAP87082.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus COL] gi|32731681|gb|AAP87083.1| DNA mismatch repair protein MutS [Staphylococcus aureus] gi|32731683|gb|AAP87084.1| DNA mismatch repair protein MutS [Staphylococcus aureus] gi|32731685|gb|AAP87085.1| DNA mismatch repair protein MutS [Staphylococcus aureus] gi|32731687|gb|AAP87086.1| DNA mismatch repair protein MutS [Staphylococcus aureus] gi|32731689|gb|AAP87087.1| DNA mismatch repair protein MutS [Staphylococcus aureus] gi|32731693|gb|AAP87089.1| DNA mismatch repair protein MutS [Staphylococcus aureus] gi|32731697|gb|AAP87091.1| DNA mismatch repair protein MutS [Staphylococcus aureus] gi|32731699|gb|AAP87092.1| DNA mismatch repair protein MutS [Staphylococcus aureus] gi|46395341|dbj|BAB57457.2| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus Mu50] gi|49244577|emb|CAG43006.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus MSSA476] gi|57286051|gb|AAW38145.1| DNA mismatch repair protein HexA [Staphylococcus aureus subsp. aureus COL] gi|147740854|gb|ABQ49152.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus JH9] gi|149946296|gb|ABR52232.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus JH1] gi|150374216|dbj|BAF67476.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus str. Newman] gi|156721751|dbj|BAF78168.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus Mu3] gi|160368270|gb|ABX29241.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|172087852|emb|CAQ35082.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus] gi|172087854|emb|CAQ35083.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus] gi|172087860|emb|CAQ35086.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus] gi|172087866|emb|CAQ35089.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus] gi|172087868|emb|CAQ35090.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus] gi|172087870|emb|CAQ35091.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus] gi|172087872|emb|CAQ35092.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus] gi|172087876|emb|CAQ35094.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus] gi|172087880|emb|CAQ35096.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus] gi|172087884|emb|CAQ35098.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus] gi|172087886|emb|CAQ35099.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus] gi|253724324|gb|EES93053.1| MutS protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257789621|gb|EEV27961.1| DNA mismatch repair protein MutS [Staphylococcus aureus A9781] gi|257839200|gb|EEV63676.1| DNA mismatch repair protein MutS [Staphylococcus aureus A9763] gi|257842321|gb|EEV66746.1| DNA mismatch repair protein MutS [Staphylococcus aureus A9719] gi|257849152|gb|EEV73134.1| DNA mismatch repair protein mutS [Staphylococcus aureus A9299] gi|257850126|gb|EEV74079.1| DNA mismatch repair protein mutS [Staphylococcus aureus A8115] gi|257853725|gb|EEV76684.1| DNA mismatch repair protein mutS [Staphylococcus aureus A6300] gi|257857364|gb|EEV80262.1| DNA mismatch repair protein mutS [Staphylococcus aureus A6224] gi|257863138|gb|EEV85902.1| DNA mismatch repair protein mutS [Staphylococcus aureus A5937] gi|259160730|gb|EEW45751.1| DNA mismatch repair protein [Staphylococcus aureus 930918-3] gi|262075202|gb|ACY11175.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus ED98] gi|282590640|gb|EFB95717.1| DNA mismatch repair protein MutS [Staphylococcus aureus A10102] gi|282594201|gb|EFB99188.1| DNA mismatch repair protein MutS [Staphylococcus aureus A9765] gi|282764780|gb|EFC04905.1| DNA mismatch repair protein MutS [Staphylococcus aureus A8117] gi|285816977|gb|ADC37464.1| DNA mismatch repair protein MutS [Staphylococcus aureus 04-02981] gi|294825091|gb|EFG41513.1| DNA mismatch repair protein MutS [Staphylococcus aureus A9754] gi|294968820|gb|EFG44842.1| DNA mismatch repair protein MutS [Staphylococcus aureus A8819] gi|297178490|gb|EFH37736.1| DNA mismatch repair protein MutS [Staphylococcus aureus A8796] gi|300886386|gb|EFK81588.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus TCH70] gi|302751117|gb|ADL65294.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340123|gb|EFM06064.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315131089|gb|EFT87073.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus CGS03] gi|315198537|gb|EFU28866.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus CGS01] gi|320140887|gb|EFW32734.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus MRSA131] gi|320143846|gb|EFW35618.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus MRSA177] gi|329727588|gb|EGG64044.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus 21172] gi|329733669|gb|EGG69997.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus 21193] Length = 872 Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust. Identities = 318/924 (34%), Positives = 490/924 (53%), Gaps = 111/924 (12%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPMM+QY++IKS D L+F+R+GDFYE+F++DA ASR L ITLTKR I Sbjct: 1 MSNVTPMMQQYLKIKSEYQDCLLFFRLGDFYEMFYEDAKEASRVLEITLTKRDAKKENPI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A+ YI L+ G+++AICEQ+E P + K +VRR VVR+VTPGT+ E Sbjct: 61 PMCGVPYHSADSYIDTLVNNGYKVAICEQMEDP-----KQTKGMVRREVVRIVTPGTVME 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD-RLISDIMRIDPREIIFS 200 + +NY+++ + E A+++ D+STG K++ N + L+++I I+P E++ + Sbjct: 116 QGGVDDKQNNYILSFVMNQPEIALSYCDVSTGELKVTHFNDEATLLNEITTINPNEVVIN 175 Query: 201 E-------------------KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYY 241 + +E +E S+ +T + + D+ I ++ D Sbjct: 176 DNISDNLKRQINMVTETITVRETLSSEIYSVNQTEHKLMYQATQLLLDY-IHHTQKRD-- 232 Query: 242 NITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLE 301 S +E AAI Y+K +D A+ NLE Sbjct: 233 ----------LSHIEDVVQYAAIDYMK-----------------------MDFYAKRNLE 259 Query: 302 ILRTLS-GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL 360 + ++ S++ +LL +D + T G R + I PL +I RLD ++ F + I Sbjct: 260 LTESIRLKSKKGTLLWLMDETKTPMGARRLKQWIDRPLISKEQIEARLDIVDEFSAHFIE 319 Query: 361 INPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGA 420 + ++ L D+ R + R+ G +D+ ++ I NI L N + + Sbjct: 320 RDTLRTYLNQVYDIERLVGRVSYGNVNARDLIQLKHSISEIPNIKALL--NSMNQNTLVQ 377 Query: 421 VEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 V +L+ L L+ L L ++ P +DGG + G + LDE K +A LQ Sbjct: 378 VNQLEPLDDLLD-ILEQSLVEEPPISVKDGGLFKVGFNTQLDEYLEASKNGKTWLAELQA 436 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 K + T IK+LKI N GYFIE+T ++ L+ S+ ++ +QT+SN RF T EL Sbjct: 437 KERQRTGIKSLKISFNKVFGYFIEITRAN---LQNFEPSEFGYMRKQTLSNAERFITDEL 493 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 + E+ I A + A+ +E + F L + + +E L +++I+ +D + A +A++ N Sbjct: 494 KEKEDIILGAEDKAIELEYQLFVQLREEVKKYTERLQQQAKIISELDCLQSFAEIAQKYN 553 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 Y RP + + + RHP+VE+ + ++ N+C L N ++L+TGPNM Sbjct: 554 YTRPSFSENKTLELVESRHPVVERVM---DYNDYVPNNCRLD-----NETFIYLITGPNM 605 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GKST++RQ A+I IMAQMG+YVP A + I D++F+R+G+AD+L SG+STFMVEM+E Sbjct: 606 SGKSTYMRQVAIISIMAQMGAYVPCKEAVLPIFDQIFTRIGAADDLVSGKSTFMVEMLEA 665 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 L AT S +I DEIGRGT+T DGL++A A IEY+ ET+ + L +TH+HELT L + Sbjct: 666 QKALTYATEDSLIIFDEIGRGTSTYDGLALAQAMIEYVAETSHAKTLFSTHYHELTTLDQ 725 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 +L N + ++ +IFLHKV G D SYGIQV KLA LP VISRA IL FE Sbjct: 726 ALPSLKNVHVAANEYKGELIFLHKVKDGAVDDSYGIQVAKLADLPEKVISRAQVILSEFE 785 Query: 841 ------------KLYHH----NQKDMRLYYPEIQTKESKNNLSKND------KLF----- 873 K+ + NQ+++ L +E+ + LS+ D LF Sbjct: 786 ASAGKKSSISNLKMVENEPEINQENLNL-----SVEETTDTLSQKDFEQASFDLFENDQE 840 Query: 874 --VE-KIKCLNLDEMSPLTALKTL 894 +E +IK LNL M+P+ AL L Sbjct: 841 SEIELQIKNLNLSNMTPIEALVKL 864 >gi|301311772|ref|ZP_07217697.1| DNA mismatch repair protein MutS [Bacteroides sp. 20_3] gi|300830332|gb|EFK60977.1| DNA mismatch repair protein MutS [Bacteroides sp. 20_3] Length = 870 Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust. Identities = 293/892 (32%), Positives = 486/892 (54%), Gaps = 53/892 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M+QY +IK+ +PD+++ +R+GDFYE++ +DA++ + LGI TKR +G+ + M G Sbjct: 7 TPLMKQYFDIKAKHPDAILLFRVGDFYEMYGEDAVIGAEILGIVQTKRANGVGQHVEMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KL++ G R+AIC+Q+E P KK LV+R + LVTPG D +L Sbjct: 67 FPHHALDSYLPKLVRAGKRVAICDQLEDPKLTKK-----LVKRGITELVTPGVSINDNIL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 + ++N+L ++ + I+++DISTG F + + D + + P+E++ + Sbjct: 122 NHKENNFLASIHFAKEVCGISFLDISTGEFMTAEGSIDYIDKLLNNFSPKEVL-----IE 176 Query: 206 HAEYKSLFETLGNVAVAQPNVF--------FDHSISESRIADYYNITTVDTFG-SFSQVE 256 K E G P F F S +E R+ ++ + FG ++ Sbjct: 177 RGNKKRFEEAFG------PRFFIFELDDWIFTTSAAEDRLLKHFETKNLKGFGVQHLKLG 230 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 A+ A + Y+ +TQ + I R + + +D +LE++ T++ SLL Sbjct: 231 IIASGAILYYLDQTQHTHISHITALSRIEEDRYVRLDKFTVRSLELVGTMN-DEGTSLLD 289 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 ID +I+ G R+ I PL D I R + +++F + P + L+ D+ R Sbjct: 290 VIDKTISPMGSRMLRRWILFPLKDVKPIQERQEVVDYFFREPETKELLDTQLEQIGDLER 349 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 +S++ +GR P+++ ++ +R+ I + ++ P R E+L + + + Sbjct: 350 IISKVAVGRVSPREVVQLKVALRAIEPIKEACMASEEPSLCRIG-EQLN-VCALIRDRIE 407 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 +++D P+ GG + G + LD+ R++ K + +Q + E T I +LKI N Sbjct: 408 KEINNDPPSLVNKGGIIAKGVNEELDDLRAIAYSGKDYLLKVQQREIELTGIPSLKIAFN 467 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 N GY+IEV ++ + + +I +QT+ N R+ T EL + E +I A L Sbjct: 468 NVFGYYIEVRNTHKDKVPAN------WIRKQTLVNAERYITEELKEYEEKILGAEEKILA 521 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E F L A+ E + + +I ID ++ A A+ Y RP++ +S +K Sbjct: 522 LETRLFNELVLALTEYIPPIQMNANLIGRIDCLLSFAKAAEANKYIRPVVSDSDKIDIKG 581 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP++EK L +P+IAND L D ++ ++TGPNM GKS LRQ ALI +M Sbjct: 582 GRHPVIEKQLPL--GEPYIANDVYL----DDEKQQIIIITGPNMAGKSALLRQTALITLM 635 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+G +VPA AHIGIVDK+F+RVG++DN++ G STFMVEM E + ILN T++S V+ D Sbjct: 636 AQIGCFVPAESAHIGIVDKIFTRVGASDNISVGESTFMVEMNEASDILNNMTSRSLVLFD 695 Query: 737 EIGRGTATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 E+GRGT+T DG+SIAWA +EY+HE + + L ATH+HEL ++ ++ KR N + V + Sbjct: 696 ELGRGTSTYDGISIAWAIVEYIHEHPNAKAKTLFATHYHELNEMERAFKRIKNYNVSVKE 755 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 +IFL K+IPG ++HS+GI V K+AG+P +++ R+ +ILK E N+++ Sbjct: 756 VGNKVIFLRKLIPGGSEHSFGIHVAKMAGMPKSIVKRSNEILKQLES---ENRQEGIGGK 812 Query: 855 P--EIQTKESKNNLS---KNDKLFVE---KIKCLNLDEMSPLTALKTLYAVK 898 P I + LS +D + + +IK L+++ ++PL AL L +K Sbjct: 813 PVKAIASAAEGYQLSFFQLDDPVLSQVRDEIKNLDVNNLTPLEALNKLSEIK 864 >gi|293567847|ref|ZP_06679188.1| DNA mismatch repair protein MutS [Enterococcus faecium E1071] gi|294619660|ref|ZP_06699078.1| DNA mismatch repair protein MutS [Enterococcus faecium E1679] gi|291589432|gb|EFF21239.1| DNA mismatch repair protein MutS [Enterococcus faecium E1071] gi|291594097|gb|EFF25553.1| DNA mismatch repair protein MutS [Enterococcus faecium E1679] Length = 881 Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust. Identities = 302/907 (33%), Positives = 495/907 (54%), Gaps = 68/907 (7%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM QY+ IK+ D+ +FYR+GDFYELF++DA+ AS+ L +TLT R ++ + IPMC Sbjct: 7 NTPMMEQYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELTLTSRNRNAEEPIPMC 66 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H A YI LI+ G+++AICEQ+E P + K +V+R V++LVTPGT+ + + Sbjct: 67 GVPHHAAQGYIDALIEKGYKVAICEQVEDP-----KTTKGMVKREVIQLVTPGTVMDSKG 121 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 LS D+N+L AV E+ A+ D+STG K + + + ++++ + +E++ E Sbjct: 122 LSAKDNNFLTAVVSQGNEFGFAYADLSTGELKTARLHDEEAVLNEASALQTKELVLG-SE 180 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 ++ + L LG V Q + + E+ + VD ++K A Sbjct: 181 ITDTLREQLSGRLGLVFSQQ------NEMEENAEFSFLTSELVDP------LKKEATGKL 228 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 ++Y+ TQ + I L +D ++ NLE+ +++ +G + +LL +D + Sbjct: 229 LTYLSVTQKRSLAHIQKAVEYQPDHFLKMDYYSKFNLELSQSIRTGKKHGTLLWLLDETK 288 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGRL + + PL + +I R + + + + +Q L D+ R R+ Sbjct: 289 TAMGGRLLKQWLDRPLIQAKQIKARQEMVASLLDSYFERIDLQSALTKVYDLERLAGRVA 348 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 G +D+ +++ + I L + + L ++ + L Q +++ + Sbjct: 349 FGNVNGRDLIQLKNSLEQVPMIRGLIEGIDQGQWQSLLSEMQPMDHLVQLIDQAIQ---- 404 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 DD P +G ++DG + LD RS K+ +A L+ K +ET IKNLKI N G Sbjct: 405 DDPPLQITEGNIIKDGFNEQLDMYRSAMRNGKKWLAELEAKERQETGIKNLKIGFNRVFG 464 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IE+T A++ +LE +R +QT++N RF T EL +LE +I A ++ +E + Sbjct: 465 YYIEITK--ANLGNAELEKYER---KQTLANAERFITPELKELETQILEAEEKSVDLEYQ 519 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP-IIDNSTNFIVKDGRH 619 F + + + + L ++ I+ +D+ + A +++ Y RP ++ + ++KDGRH Sbjct: 520 LFLAVREEVKKAIQPLQVLAKAISAVDVLQSFATISERYQYVRPELVSDKHQLLIKDGRH 579 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VEK L Q +I N +++ + L+TGPNM GKST++RQ AL V+MAQM Sbjct: 580 PVVEKVLGHQE---YIPNSVEMA-----EDEMILLITGPNMSGKSTYMRQLALTVLMAQM 631 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 G +VPA A + I D++F+R+G++D+L +G+STFMVEM+E L AT S ++ DE+G Sbjct: 632 GCFVPAKQAVLPIFDRIFTRIGASDDLIAGQSTFMVEMMEANQALRYATPNSLILFDELG 691 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A A IEY+H + + L +TH+HELT L K L + N + + + + Sbjct: 692 RGTATYDGMALAQAIIEYIHRHVQAKTLFSTHYHELTVLEKELPQLKNVHVGAVEKDGEV 751 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL--YHHN----------- 846 +FLHK++ G AD SYGI V K+AGLP+ ++ RA DIL T E HH Sbjct: 752 VFLHKMMDGPADKSYGIHVAKIAGLPSNLLERAADILHTLENGDNGHHTVPAEVEEKTKT 811 Query: 847 QKDMRLYYP-------EIQTKESKNN--------LSKNDKLFVEKIKCLNLDEMSPLTAL 891 K ++ P IQ + + N LS+N+ +E +K +NL EM+P+ AL Sbjct: 812 AKQEQIKPPAEKVNQDHIQDRVKEENQQLSLFSELSENETEVIESLKQINLLEMTPMDAL 871 Query: 892 KTLYAVK 898 TLY ++ Sbjct: 872 NTLYELQ 878 >gi|34539964|ref|NP_904443.1| DNA mismatch repair protein MutS [Porphyromonas gingivalis W83] gi|44888163|sp|Q7MXR7|MUTS_PORGI RecName: Full=DNA mismatch repair protein mutS gi|34396275|gb|AAQ65342.1| DNA mismatch repair protein MutS [Porphyromonas gingivalis W83] Length = 891 Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust. Identities = 305/902 (33%), Positives = 487/902 (53%), Gaps = 53/902 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+MRQY +IK +PD+++ +R+GDFYE F +DA++AS LGITLT+R + + + G Sbjct: 8 TPLMRQYFQIKQKHPDAILLFRVGDFYETFSEDAIVASEILGITLTRRANGAAQFVELAG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KL++ G R+AIC+Q+E P + K+LV+R + LVTPG T D +L Sbjct: 68 FPHHALDTYLPKLVRAGKRVAICDQLEDP-----KKTKTLVKRGITELVTPGVSTNDNVL 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 S ++N+L AV+ + + I+ +DISTG F N D + + P+EI+ E S Sbjct: 123 SHKENNFLAAVSCGKEVFGISLLDISTGEFMAGQGNADYVEKLLTNYRPKEILVERSERS 182 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAAAAAI 264 + LF G + + F + + R+ ++++ ++ FG + TAA A + Sbjct: 183 --RFNDLFHWSGFIFDMEDWAFSSEN-NRLRVLKHFDLKSLKGFGLEELSMAVTAAGAVL 239 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 +Y+ TQ I R D + +D +LE+L ++ +SLL ID++IT Sbjct: 240 NYLDLTQHHQLQHITSLSRLDENRYVRLDKFTVRSLELLSPMNEG-GKSLLDIIDHTITP 298 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 G R + I PL D +I R + FF ++P I + L D+ R +++ +G Sbjct: 299 MGARRIRQWIVFPLKDPARIQARQRVVEFFFRHPEERAIIAEHLTEIGDLERLVTKGAMG 358 Query: 385 RGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLP 444 R P+++ +R +++ I + D E LR KL+ + +K L ++ D Sbjct: 359 RISPREMVQLRVALQALEPIKEVCTHAD-EENLRTLGGKLELCKELRDKILREVMPDAPA 417 Query: 445 TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIE 504 R G + G DA+LDE R+L K + LQ + E T I +LK+ +NN GY+IE Sbjct: 418 ALGR-GPVIAHGVDATLDELRALAYSGKDYLIKLQQQEIERTGIPSLKVAYNNVFGYYIE 476 Query: 505 VTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEI 564 V ++ + + +I +QT+ + R+ T EL + E +I A +E + + + Sbjct: 477 VRNTHKDKVPAE------WIRKQTLVSAERYITEELKEYEAKILGAEEKIAALEGQLYAL 530 Query: 565 LSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEK 624 L + L SQ +A +D ++ A A+ + P++D S +K GRHP++E+ Sbjct: 531 LVAELQRYVAPLQQDSQAVASLDCLLSFAESARRYRFICPVVDESFTIDIKAGRHPVIEQ 590 Query: 625 TLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684 L + +P+IAND L D + ++ ++TGPNM GKS LRQ ALI +MAQ+GS+VP Sbjct: 591 QLP--ADEPYIANDIYL----DTDRQQVIIVTGPNMSGKSALLRQTALISLMAQIGSFVP 644 Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744 A A IG+VD +F+RVG++DN++ G STFMVEM E ++ILN T +S V+ DE+GRGT+T Sbjct: 645 AESARIGMVDSIFTRVGASDNISMGESTFMVEMQEASNILNNLTPRSLVLFDELGRGTST 704 Query: 745 LDGLSIAWATIEYLHETNRC--RGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFL 802 DG+SIAW+ +EY+H+ + R L ATH+HEL +L L R HN + + + ++FL Sbjct: 705 YDGISIAWSIVEYIHDNPKAHPRTLFATHYHELNELEGQLDRVHNFNVSAREVDGKMLFL 764 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH------NQKDMRLYYPE 856 K+ PG + HS+GIQV +L G+P+ ++ RA DIL E+ KD + P Sbjct: 765 RKLEPGGSAHSFGIQVARLGGMPHHIVQRATDILHRLEQEREKIEEEEPKTKDTK-RGPS 823 Query: 857 IQTKESKNNLSKNDK--------------------LFVEKIKCLNLDEMSPLTALKTLYA 896 + K + L +++K E+I LN+D ++PL AL L Sbjct: 824 EKVKNASPTLPRDEKGRSIDGYQLSFFQLDDPVLSQIREEILDLNIDNLTPLEALNKLND 883 Query: 897 VK 898 +K Sbjct: 884 IK 885 >gi|229915836|ref|YP_002884482.1| DNA mismatch repair protein MutS [Exiguobacterium sp. AT1b] gi|259511167|sp|C4L191|MUTS_EXISA RecName: Full=DNA mismatch repair protein mutS gi|229467265|gb|ACQ69037.1| DNA mismatch repair protein MutS [Exiguobacterium sp. AT1b] Length = 842 Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust. Identities = 291/882 (32%), Positives = 501/882 (56%), Gaps = 61/882 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLT-KRGKHLGKDIPMC 84 TPMM+QY IK+ PD+ +FYR+GDFYELFF+DA + ++ L +TLT K GK IPMC Sbjct: 7 TPMMKQYFSIKADYPDAFLFYRLGDFYELFFEDAQIVAKELELTLTSKNGKQAEHPIPMC 66 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H+A YI++LI+ G +AICEQ E P + K LV+R V++++TPGT Sbjct: 67 GVPHHSAAIYIEQLIEKGFNVAICEQTEDP-----KATKGLVKREVIQVITPGTYMAS-- 119 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 LS ++ YL+A++ + + IA D++TG ++T S+ + ++ +I + P E+I ++ Sbjct: 120 LSEKENRYLVAISDVAGRFGIARGDVTTGESWLTTLSSEEAVLREIEGLLPNEVIVEDER 179 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 L+ L G Q + ES +A G+ + +++A Sbjct: 180 LA-----DLLRQTGIPLSIQVDK------RESTLAQ----------GAKDEAQRSAFELL 218 Query: 264 ISYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTI 318 +Y+ KTQ + +P + Y +++ + +D+ NLE+ R+ SG R+ SLL + Sbjct: 219 FAYLTKTQKRSLDHLQPAVAY----EVEQHMQLDANTARNLELFRSARSGERKGSLLSLL 274 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D + T GGRL + PL I R D++ + + +L + +Q+ LK D+ R + Sbjct: 275 DETTTAMGGRLLKRWLEQPLYTEQGIRERQDAVENLVDDFMLRDQLQEELKRVYDIERLV 334 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLS 436 +++ G +D+ +RD + ++ +L +K D +++ ++ ++L + L Sbjct: 335 AKVGYGTANARDLVQLRDTLERMPSVRSLLQTVKADRLQQIEQNLDSF----ETLSEQLR 390 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + L D P ++GG +R G LDE + K IA+L+ + T IK+LK+ +N Sbjct: 391 AALVDSPPISTKEGGMIRHGYSDELDELLEAKANGKSWIANLEQQERIATGIKSLKVGYN 450 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY++EVT ++A +L++ R+ +QT++N R+ T EL + E I A + Sbjct: 451 RVFGYYLEVTKANAKLLEEG-----RYERKQTLTNAERYITPELKEKEALILGAEEKSCT 505 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E + F L + ++ L ++ ++ +D+ +ALA++A+++ Y RP+ +++ ++ Sbjct: 506 LEYDLFVALREEVKTYTKPLQQLARSLSELDVLLALAVVAEKREYVRPV--TTSHVQIER 563 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP++E L + ++AND L ++ ++ L+TGPNM GKST++RQ ALI I+ Sbjct: 564 GRHPVIETVLPRGE---YVANDLTLD-----DTRQMLLITGPNMSGKSTYMRQFALIAIL 615 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 Q+GS+VPA A + + D++F+R+G+AD+L SG+STFMVEM ET + +AT+ S ++LD Sbjct: 616 HQIGSFVPAEAAELPLFDRIFTRIGAADDLVSGQSTFMVEMTETRQAVTEATSNSLILLD 675 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DG+++A A +EY+ + + L +TH+HELT L S+ N ++ + + Sbjct: 676 EIGRGTSTYDGMALAQAIVEYIASSIGAKTLFSTHYHELTVLEDSIPSLENVHVRAIERD 735 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 ++FLH+V PG AD SYGI V +LA LP+++I RA IL E + + P+ Sbjct: 736 GRVVFLHEVHPGRADKSYGIHVAELAELPDSLIDRARTILSELESEATKPALNEQSAPPQ 795 Query: 857 IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ + ND + E++ L+L M+P+ A++ LY ++ Sbjct: 796 VEEVSQLSLFESNDAVR-EQLLKLDLLAMNPIEAMQALYELQ 836 >gi|28948844|pdb|1NG9|A Chain A, E.Coli Muts R697a: An Atpase-Asymmetry Mutant gi|28948845|pdb|1NG9|B Chain B, E.Coli Muts R697a: An Atpase-Asymmetry Mutant Length = 800 Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust. Identities = 300/840 (35%), Positives = 456/840 (54%), Gaps = 62/840 (7%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+ +K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLRLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEG---RRGLRRRPLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAGLQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFIDKPGIRITEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DEIG GT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATEYSLVLMDEIGAGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 740 EGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 799 >gi|308390240|gb|ADO32560.1| DNA mismatch repair protein [Neisseria meningitidis alpha710] Length = 864 Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust. Identities = 304/889 (34%), Positives = 473/889 (53%), Gaps = 54/889 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM+QY+ IK+ + D LVFYRMGDFYE+FFDDA+ A++ L ITLT RG+ G+ + M G Sbjct: 7 SPMMQQYLGIKAQHTDKLVFYRMGDFYEMFFDDAVEAAKLLDITLTTRGQVDGEPVKMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ +L+K+G +AICEQ+ + K V R VVR+VTPGTLT+ LL Sbjct: 67 VPFHAAEQYLARLVKLGKSVAICEQV-----GEVGAGKGPVERKVVRIVTPGTLTDSALL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 ++N ++AV+ + +AW + +G FK + D+L ++ R+ EI+ + Sbjct: 122 EDKETNRIVAVSPDKKYIGLAWASLQSGEFKTKLTTVDKLDDELARLQAAEILLPDS--- 178 Query: 206 HAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQ---VEKTAAA 261 K+ + V + N + F E + +Y+ + FG + V AA Sbjct: 179 ----KNAPQLQTASGVTRLNAWQFAADAGEKLLTEYFGCQDLRGFGLDGKEHAVAIGAAG 234 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 A ++YI+ TQ + + E + +D+A R NLEI +TLSG + +L+ T+D Sbjct: 235 ALLNYIRLTQNLMPQHLDGLSLETDSQYIGMDAATRRNLEITQTLSGKKSPTLMSTLDLC 294 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G RL A + PL + I R +++ P+Q LK+ D+ R +R+ Sbjct: 295 ATHMGSRLLALWLHHPLRNRAHIRARQEAVAALESQ---YKPLQCRLKNIADIERIAARI 351 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL-PQSLE--KTLSSM 438 +G P+D+A +RD + I DL +E LK + P++L + L Sbjct: 352 AVGNARPRDLASLRDSLFELAQI-------DLSANGSSLLETLKAVFPENLSTAEQLRQA 404 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + + + +DG + G LDE R +++ + L+ K E T + LK++ N Sbjct: 405 ILPEPSVWLKDGNVINHGFHPELDELRRIQNHGDEFLLDLEAKERERTGLSTLKVEFNRV 464 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 G++IE++ + A D + RQT+ N RF T EL E+++ A AL +E Sbjct: 465 HGFYIELSKTQAEQAPAD------YQRRQTLKNAERFITPELKAFEDKVLTAQEQALALE 518 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F+ + + L A++ A +D+ + LAKE+N+ RP + +++GR Sbjct: 519 KQLFDGVLKNLQTALPQLQKAAKAAAALDVLSTFSALAKERNFVRPEFADYPVIHIENGR 578 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ ++ F AN DL + +L LLTGPNMGGKST++RQ ALIV++A Sbjct: 579 HPVVEQQVRH-----FTANHTDLD-----HKHRLMLLTGPNMGGKSTYMRQVALIVLLAH 628 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 G +VPA A IG +D++F+R+G++D+LAS RSTFMVEM ETA IL+ AT QS V++DE+ Sbjct: 629 TGCFVPADAATIGPIDQIFTRIGASDDLASNRSTFMVEMSETAYILHHATEQSLVLMDEV 688 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGL++A A E+L + N+ L ATH+ ELT L ++ N L + + Sbjct: 689 GRGTSTFDGLALAHAVAEHLLQKNKSFSLFATHYFELTYLPEAHAAALNMHLSALEQGQD 748 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY---- 854 I+FLH++ PG A SYGI V KLAGLP + A L E N+ + ++ Sbjct: 749 IVFLHQIQPGPAGKSYGIAVAKLAGLPVRALKSAQKHLNELENQAAANRPQLDIFSTMPS 808 Query: 855 -----PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P + K + + ++ L+ D ++P AL LY +K Sbjct: 809 EKGDEPNVGNFVDKAEEKHFEGILAAALEKLDPDSLTPRKALSELYRLK 857 >gi|110597745|ref|ZP_01386029.1| DNA mismatch repair protein MutS [Chlorobium ferrooxidans DSM 13031] gi|110340652|gb|EAT59132.1| DNA mismatch repair protein MutS [Chlorobium ferrooxidans DSM 13031] Length = 875 Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust. Identities = 295/881 (33%), Positives = 478/881 (54%), Gaps = 36/881 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K +PMMRQY+E+K P+ L+ +R+GDFYE FF+DA L S L I LTKR ++P Sbjct: 9 KEHSPMMRQYLEVKERYPEFLLLFRVGDFYETFFEDARLVSGALNIVLTKRSNGSSAEVP 68 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M G P H + YI KL+K G ++A+C+Q+E P EAK +VRR + +VTPG D Sbjct: 69 MAGFPHHASEGYIAKLVKKGFKVAVCDQVEDPAEAK-----GIVRREITDIVTPGITFSD 123 Query: 143 QLLSPTDSNYLMAVARIR----TEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREII 198 ++L +NYL AVA +R T +A+ID++T F I++ + + ++ + P EI+ Sbjct: 124 KILDDRHNNYLCAVAFLREGRATIAGVAFIDVTTAEFSIASMEPEGVREFLLSLHPSEIL 183 Query: 199 FSEKELSHAEYKSLFETLGN-VAVAQPNVF-FDHSISESRIADYYNITTVDTFG-SFSQV 255 S E A ++ L ++ + + + + + F + ++ ++ ++ FG ++ Sbjct: 184 ISASE--RARFEQLKQSCSQELLITELDAWMFGEEQTGEVLSRHFKTHSLKGFGIEGNRA 241 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQSL 314 + AA + Y+++T+ I + +D + NLEI+ ++ G+ SL Sbjct: 242 GRVAAGVILQYLEETRQNRLHYITRISELHGDDHMTLDLQTKRNLEIISSMQDGTLNGSL 301 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L+ +D++ G RL + PL I RLD++ + + + L + D+ Sbjct: 302 LQVMDHTCNPMGARLIRRWLQRPLRKIEDIQLRLDAVEELTGCREMREGLGEKLSAINDL 361 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGI-NILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 RSL+R+ R P+++ + GI I L L+ LR +L LP+ L + Sbjct: 362 ERSLARIATFRTMPREVRQL--GISLAIIPSLQELLQEAASARLRSLAARLNPLPE-LAR 418 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + + + RDGG++R G A LD+ RS+ +K + +Q + T I +LK+ Sbjct: 419 RIEEAIDPESGASMRDGGYIRSGFHAELDDLRSISSTAKDRLMEIQQQERLNTSISSLKV 478 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 + N GY+IE++ +++ + E K QT+ N R+T L + E +I NA Sbjct: 479 QFNKVFGYYIEISRANSDKVPPYYEKK------QTLVNAERYTIPALKEYEEKILNAEEK 532 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + +E F L + Q+ + + VIA +D + A+ A + YC+P + + N Sbjct: 533 SFALEARLFHDLCAEVAGQASLIQTNASVIAELDALFSFALAAVQYGYCKPEMSDHRNLE 592 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + +GRHP++E+ + +P++ NDC ++K K+ ++TGPNM GKS+FLRQ LI Sbjct: 593 IINGRHPVLERIMS--DDEPYVQNDCLF---DEKQ--KMLIITGPNMAGKSSFLRQTGLI 645 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 V++AQ GS+VPA A IG+VD++F+RVG++DNLASG STF+VEM E ASILN AT S + Sbjct: 646 VLLAQAGSFVPAERAEIGLVDRIFTRVGASDNLASGESTFLVEMNEAASILNNATATSLL 705 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 +LDEIGRGT+T DG+SIAW+ EY+ R L ATH+HEL +L + N V Sbjct: 706 LLDEIGRGTSTFDGMSIAWSMSEYIAHAIGARTLFATHYHELAELENRIPGVVNYNATVV 765 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 ++ + +IFL K++ G D+SYGI+V K+AG+P VI RA +IL EK ++ L Sbjct: 766 ETADRVIFLRKIVRGSTDNSYGIEVAKMAGMPAEVIVRAREILAGMEK----RDIEIPLD 821 Query: 854 YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 P + ++D ++ L+LD ++P+ L L Sbjct: 822 RPPTVKSMQISLFEESDSRLRRALEMLDLDRLTPIEGLLEL 862 >gi|300774609|ref|ZP_07084472.1| DNA mismatch repair protein MutS [Chryseobacterium gleum ATCC 35910] gi|300506424|gb|EFK37559.1| DNA mismatch repair protein MutS [Chryseobacterium gleum ATCC 35910] Length = 863 Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust. Identities = 303/894 (33%), Positives = 497/894 (55%), Gaps = 58/894 (6%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TP+M QY IK PD+L+ +R+GDFYE F DA+ S+ LGI LTKR G + Sbjct: 5 KKETPLMTQYNTIKGKYPDALLLFRVGDFYETFGQDAVKTSQILGIVLTKRNNGEG-SVE 63 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 + G P H+ + Y+ KL++ G R+AIC+Q+E P + K +V+R V LVTPG D Sbjct: 64 LAGFPHHSIDSYLPKLVRAGMRVAICDQLEDP-----KMVKGIVKRGVTELVTPGVTFND 118 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK 202 Q+L+ +N+L+++ + + ++ IA +DISTG F +S N ++L+ + DP EIIF Sbjct: 119 QVLNSKKNNFLLSLHKEKEKYGIALVDISTGEFLVSEGNLEKLLHIVNTFDPSEIIFQRS 178 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 + K+ A + F ++ + ++ +++ ++ FG + AA Sbjct: 179 TQIPEQIKN------KNAFKLEDWAFQYNFAYEKLTNHFKTNSLKGFGVENLPLAITAAG 232 Query: 263 AI-------------SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS 309 AI S+I K Q++ P+ + L +D+ NLEI+ S Sbjct: 233 AIFAYLVEDTHHNLLSHITKLQII-------PQ----EDYLMMDNFTLRNLEIVYP-SNP 280 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 + +SLL ID + T GGRL RI PL +I RL I+F +N L I ++LK Sbjct: 281 QGKSLLDIIDKTSTPMGGRLLRRRIILPLKSVDEIMRRLSLIDFLNENDHLKYEICQLLK 340 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 S D+ R + +L + PK++ +R +S INI + ++ +E L L + Sbjct: 341 SISDLDRLMGKLAAEKISPKELGYLR---QSLINIHKIKSLLHSHADVLAWLEPLFDL-E 396 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 L K L + L+++LP G +++G LD R+L+ + + + + + E T I Sbjct: 397 ELIKFLQNHLNEELPVSIAKGNIIKEGVSEELDRLRNLQSKGRGFLDEMCQREIERTGIT 456 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 +LKI NN GY+IEV ++ KD + D ++ +QT+ N R+ T EL + EN+I Sbjct: 457 SLKIDFNNVFGYYIEVRNTH-----KD-KVPDDWVRKQTLVNAERYITEELKEYENQILG 510 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 A ++E + + + + + S +IA +D++ L+ LA ++Y +P++++ Sbjct: 511 AEEKIGVLETSLYRNVCGETMVYIDQIQGNSNIIAQLDVAAGLSELAVSESYTKPVLNDG 570 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 +K+ RHPI+E L + +I ND L DK+S ++ ++TGPNM GKS LRQ Sbjct: 571 YAIDLKEARHPIIENALPL--GEKYIPNDIFL----DKDSQQIIMVTGPNMAGKSAILRQ 624 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 A++ ++AQ+GS+VPA YA IG++DK+F+RVG+ DN+++G STFMVEM E A+ILN + Sbjct: 625 TAIVCLLAQIGSFVPAKYAEIGMLDKIFTRVGATDNISAGESTFMVEMNEAANILNNISE 684 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHE-TNRCRGLLATHFHELTDLSKSLKRFHNA 788 +S ++LDEIGRGT+T DG+SIAWA EYLH+ + + L ATH+HEL +++ + +R N Sbjct: 685 RSLILLDEIGRGTSTYDGVSIAWAIAEYLHQHPTQAKTLFATHYHELNEMTVNFERVKNF 744 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 + + ++ IIFL K++ G ++HS+GI V KLAG+P V++RA +ILKT E Sbjct: 745 HVSIQENKGNIIFLRKLVSGGSEHSFGIHVAKLAGMPAKVVNRANEILKTLEASRTQGNG 804 Query: 849 DMRLYYPEIQTKESKNNLSKNDKLFVEKIK----CLNLDEMSPLTALKTLYAVK 898 + + + + + + D +E I+ ++++ ++P+ AL L A+K Sbjct: 805 GISESIKRVTEENMQLSFFQLDDPVLENIREELTKIDINTLTPIEALMKLNAIK 858 >gi|93117341|gb|ABE99588.1| MutS [Neisseria meningitidis] gi|93117347|gb|ABE99591.1| MutS [Neisseria meningitidis] gi|93117349|gb|ABE99592.1| MutS [Neisseria meningitidis] gi|325127255|gb|EGC50193.1| DNA mismatch repair protein MutS [Neisseria meningitidis N1568] Length = 864 Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust. Identities = 304/889 (34%), Positives = 473/889 (53%), Gaps = 54/889 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM+QY+ IK+ + D LVFYRMGDFYE+FFDDA+ A++ L ITLT RG+ G+ + M G Sbjct: 7 SPMMQQYLGIKAQHTDKLVFYRMGDFYEMFFDDAVEAAKLLDITLTTRGQVDGEPVKMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ +L+K+G +AICEQ+ + K V R VVR+VTPGTLT+ LL Sbjct: 67 VPFHAAEQYLARLVKLGKSVAICEQV-----GEVGAGKGPVERKVVRIVTPGTLTDSALL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 ++N ++AV+ + +AW + +G FK + D+L ++ R+ EI+ + Sbjct: 122 EDKETNRIVAVSPDKKYIGLAWASLQSGEFKTKLTTVDKLDDELARLQAAEILLPDS--- 178 Query: 206 HAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQ---VEKTAAA 261 K+ + V + N + F E + +Y+ + FG + V AA Sbjct: 179 ----KNAPQLQTASGVTRLNAWQFAADAGEKLLTEYFGCQDLRGFGLDGKEHAVAIGAAG 234 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 A ++YI+ TQ + + E + +D+A R NLEI +TLSG + +L+ T+D Sbjct: 235 ALLNYIRLTQNLMPQHLDGLSLETDSQYIGMDAATRRNLEITQTLSGKKSPTLMSTLDLC 294 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G RL A + PL + I R +++ P+Q LK+ D+ R +R+ Sbjct: 295 ATHMGSRLLALWLHHPLRNRAHIRARQEAVAALESQ---YKPLQCRLKNIADIERIAARI 351 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL-PQSLE--KTLSSM 438 +G P+D+A +RD + I DL +E LK + P++L + L Sbjct: 352 AVGNARPRDLASLRDSLFELAQI-------DLSANGSSLLETLKAVFPENLSTAEQLRQA 404 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + + + +DG + G LDE R +++ + L+ K E T + LK++ N Sbjct: 405 ILPEPSVWLKDGNVINHGFHPELDELRRIQNHGDEFLLDLEAKERERTGLSTLKVEFNRV 464 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 G++IE++ + A D + RQT+ N RF T EL E+++ A AL +E Sbjct: 465 HGFYIELSKTQAEQAPAD------YQRRQTLKNAERFITPELKAFEDKVLTAQEQALALE 518 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F+ + + L A++ A +D+ + LAKE+N+ RP + +++GR Sbjct: 519 KQLFDGVLKNLQTTLPQLQKAAKAAAALDVLSTFSALAKERNFARPEFADYPVIHIENGR 578 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ ++ F AN DL + +L LLTGPNMGGKST++RQ ALIV++A Sbjct: 579 HPVVEQQVRH-----FTANHTDLD-----HKHRLMLLTGPNMGGKSTYMRQVALIVLLAH 628 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 G +VPA A IG D++F+R+G++D+LAS RSTFMVEM ETA IL+ AT QS V++DE+ Sbjct: 629 TGCFVPADAATIGPFDQIFTRIGASDDLASNRSTFMVEMSETAYILHHATEQSLVLMDEV 688 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGL++A A E+L + N+ L ATH+ ELT L ++ N L + + Sbjct: 689 GRGTSTFDGLALAHAVAEHLLQKNKSFSLFATHYFELTYLPEAHAAAVNMHLSALEQGQD 748 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY---- 854 I+FLH++ PG A SYGI V KLAGLP + A L E N+ + ++ Sbjct: 749 IVFLHQIQPGPAGKSYGIAVAKLAGLPVRALKSAQKHLNELENQAAANRPQLDIFSTMPS 808 Query: 855 -----PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P + + K + + ++ L+ D ++P AL LY +K Sbjct: 809 EKGDEPNVDSFVDKAEEKHFEGILAAALEKLDPDSLTPREALSELYRLK 857 >gi|161615830|ref|YP_001589795.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|207858169|ref|YP_002244820.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213425691|ref|ZP_03358441.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|161365194|gb|ABX68962.1| hypothetical protein SPAB_03621 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|206709972|emb|CAR34327.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261248045|emb|CBG25879.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301159468|emb|CBW18987.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|322614270|gb|EFY11201.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621666|gb|EFY18519.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322636009|gb|EFY32717.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639602|gb|EFY36288.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646901|gb|EFY43404.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652202|gb|EFY48561.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654719|gb|EFY51038.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658940|gb|EFY55193.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322668258|gb|EFY64415.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322683749|gb|EFY79759.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193863|gb|EFZ79066.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200332|gb|EFZ85414.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202354|gb|EFZ87398.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205588|gb|EFZ90553.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210100|gb|EFZ95003.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216402|gb|EGA01129.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323230745|gb|EGA14863.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234904|gb|EGA18990.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238943|gb|EGA22993.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241643|gb|EGA25674.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248210|gb|EGA32146.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251206|gb|EGA35079.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256090|gb|EGA39828.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263226|gb|EGA46764.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264272|gb|EGA47778.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271098|gb|EGA54526.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 841 Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust. Identities = 305/892 (34%), Positives = 480/892 (53%), Gaps = 73/892 (8%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IPM G+P Sbjct: 1 MMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPMAGIP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT++++ LL Sbjct: 61 HHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTISDEALLQE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKELSH 206 N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++++E Sbjct: 116 RQDNLLAAIWQDGKGYGYATLDISSGRFRLSEPADRETMAAELQRTNPAELLYAE---DF 172 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT-----AAA 261 AE +L E + ++ I +R T D G F VE AA Sbjct: 173 AEM-ALIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENASRGLCAAG 226 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 + Y+K TQ + P I E Q ++ +D+A R NLEI + L+G E +L +D + Sbjct: 227 CLLQYVKDTQRTSLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGVENTLAAVLDCT 286 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +T G R+ + P+ ++ + R +I ++ +Q +L+ D+ R L+RL Sbjct: 287 VTPMGSRMLKRWLHMPVRNTDILRERQQTIGALQDT---VSELQPVLRQVGDLERILARL 343 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP-QSLEKT------ 434 + P+D+A +R + LPE L +E + P Q+L K Sbjct: 344 ALRTARPRDLARMRHAFQQ------------LPE-LHAQLETVDSAPVQALRKKMGDFAE 390 Query: 435 ----LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L + D P RDGG + G LDE R+L D + + L+++ E T + Sbjct: 391 LRDLLERAIIDAPPVLVRDGGVIAPGYHEELDEWRALADGATDYLDRLEIRERERTGLDT 450 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ +N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + Sbjct: 451 LKVGYNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPELKEYEDKVLTS 504 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 AL +E + ++ L + ++ L ++ +A +D+ + LA A NY P + Sbjct: 505 KGKALALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLAERAWTLNYTCPTFTDKP 564 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNMGGKST++RQ Sbjct: 565 GIRITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQT 615 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT Sbjct: 616 ALIALLAYIGSYVPAQNVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEN 675 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L Sbjct: 676 SLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHL 735 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH---NQ 847 + + I F+H V G A SYG+ V LAG+P VI RA L+ E + + Q Sbjct: 736 DALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESISPNAAATQ 795 Query: 848 KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 D T+ S + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 796 VD--------GTQMSLLAAPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 839 >gi|88191729|pdb|1WBB|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme Muts, E38a Mutant, In Complex With A G.T Mismatch gi|88191730|pdb|1WBB|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme Muts, E38a Mutant, In Complex With A G.T Mismatch Length = 800 Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust. Identities = 300/840 (35%), Positives = 456/840 (54%), Gaps = 62/840 (7%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+ +K+ +P+ L+FYRMGDFY LF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLRLKAQHPEILLFYRMGDFYALFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEG---RRGLRRRPLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAGLQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFIDKPGIRITEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 740 EGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 799 >gi|217077343|ref|YP_002335061.1| DNA mismatch repair protein MutS [Thermosipho africanus TCF52B] gi|217037198|gb|ACJ75720.1| DNA mismatch repair protein MutS [Thermosipho africanus TCF52B] Length = 817 Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust. Identities = 284/821 (34%), Positives = 475/821 (57%), Gaps = 45/821 (5%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 +K+ TPMM+QY++IK D++V +R+GDFYE FF+DA + S+ L I LTKR ++ Sbjct: 1 MKNLTPMMKQYMDIKKNYEDAIVLFRLGDFYEAFFEDAEIISKVLNIVLTKR-----QNA 55 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PM G+P H ++Y++KL+ G+++AICEQ+E P +AK +VRR V R++TPGTL E Sbjct: 56 PMAGIPHHALDNYLKKLVDSGYKVAICEQMEDPSQAK-----GIVRREVTRVITPGTLIE 110 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFS 200 + LLS +++NYLMAVA R + A++D+STG +F + LI + ++ +II Sbjct: 111 EDLLS-SENNYLMAVA-FRENFNTAFVDVSTGELFVKDFETINDLIDFVSIVNISQIICE 168 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 E ++ L + L N + + + ++ E ++ + + I ++D F S + Sbjct: 169 ENI-----FEELKDNLPNKFIEKLDDWYFEGF-EDKVKETFKIVSIDHF-ELSNGQLRVL 221 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 A + Y++ T M N + P++ + + +DS NL ++ G + ++L ++ Sbjct: 222 GALLKYLEYTLMSN-LALEEPKKLEESKWMILDSKTVDNLSLI---PGEKGKNLYDILNK 277 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G RL + I PL I R + ++ F + +L+N I++ L DV R L+R Sbjct: 278 TKTAMGSRLLKKWILQPLKVKKDIIERQEIVDAFFNDRLLLNEIREYLNGIFDVERILTR 337 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 L+ G+ PKD+ +++ + NIL N E+ V+++++ P+ +E L L Sbjct: 338 LQYGKVSPKDLISLKNTLYIIPNILEALKTN---EKFSKYVQEIEEFPEVVE-LLERALY 393 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 +D + DG ++DG LD+ R+ S+ + + + E T I+ LK+ N G Sbjct: 394 EDPSSTVGDGNVIKDGYSPELDDYRNFLFHSEDKLKEFEREERERTNIQKLKVGFNQVFG 453 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IEV D +I +QT+ N R+ T +L + E +I +A ++E Sbjct: 454 YYIEVPKGQVK------NVPDYYIRKQTLVNSERYITQKLKEFEEKIMSAREKVEILEKA 507 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F+ L+ I++ + ++ IA +D+ A +++ Y +P D+ FIVK+ RH Sbjct: 508 LFDELTKMILKYVNDIKKTAEKIAELDVLSTFAYVSQLYGYVKPEFDDE-KFIVKEARHA 566 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE+ + F+ ND + +++++TGPNM GKST++RQ LI +MAQ+G Sbjct: 567 VVERYVSN-----FVPNDIYMDSLR-----RMYIITGPNMSGKSTYIRQVGLIAVMAQIG 616 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 +VPA A + I D++F+R+G+ D++++G+STF+VEM E A IL++AT S V+LDE+GR Sbjct: 617 CFVPAKNAKLPIFDRIFTRMGARDDISTGKSTFLVEMSEVALILSKATKDSLVLLDEVGR 676 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GT+T DG+SIAWA EY++ +C+ + ATHF ELT+LS N T++V ++N+GI+ Sbjct: 677 GTSTFDGISIAWAMSEYIYNEIKCKTIFATHFTELTELSDVYNGIKNLTIEVEETNDGIV 736 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 FLHKV+ G+AD SYGI+V K+AG+P+ V+ RA +IL+ K Sbjct: 737 FLHKVVDGVADRSYGIEVAKIAGVPDGVVERAKEILEVITK 777 >gi|121635803|ref|YP_976048.1| DNA mismatch repair protein [Neisseria meningitidis FAM18] gi|304388796|ref|ZP_07370852.1| DNA mismatch repair protein MutS [Neisseria meningitidis ATCC 13091] gi|166232125|sp|A1KWM6|MUTS_NEIMF RecName: Full=DNA mismatch repair protein mutS gi|120867509|emb|CAM11286.1| DNA mismatch repair protein [Neisseria meningitidis FAM18] gi|304337248|gb|EFM03426.1| DNA mismatch repair protein MutS [Neisseria meningitidis ATCC 13091] gi|325131244|gb|EGC53956.1| DNA mismatch repair protein MutS [Neisseria meningitidis M6190] gi|325137418|gb|EGC60006.1| DNA mismatch repair protein MutS [Neisseria meningitidis ES14902] Length = 864 Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust. Identities = 308/893 (34%), Positives = 476/893 (53%), Gaps = 62/893 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM+QY+ IK+ + D LVFYRMGDFYE+FFDDA+ A++ L ITLT RG+ G+ + M G Sbjct: 7 SPMMQQYLGIKAQHTDKLVFYRMGDFYEMFFDDAVEAAKLLDITLTTRGQVDGEPVKMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ +L+K+G +AICEQ+ + K V R VVR+VTPGTLT+ LL Sbjct: 67 VPFHAAEQYLARLVKLGKSVAICEQV-----GEVGAGKGPVERKVVRIVTPGTLTDSALL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 ++N ++AV+ + +AW + +G FK + D+L ++ R+ EI+ + Sbjct: 122 EDKETNRIVAVSPDKKYIGLAWASLQSGEFKTKLTTVDKLDDELARLQAAEILLPDS--- 178 Query: 206 HAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQ---VEKTAAA 261 K+ + V + N + F E + +Y+ + FG + V AA Sbjct: 179 ----KNAPQLQTASGVTRLNAWQFAADAGEKLLTEYFGCQDLRGFGLDGKEHAVAIGAAG 234 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 A ++YI+ TQ + + E + +D+A R NLEI +TLSG + +L+ T+D Sbjct: 235 ALLNYIRLTQNLMPQHLDGLSLETDSQYIGMDAATRRNLEITQTLSGKKSPTLMSTLDLC 294 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G RL A + PL + I R +++ P+Q LK+ D+ R +R+ Sbjct: 295 ATHMGSRLLALWLHHPLRNRAHIRARQEAVAALESQ---YKPLQCRLKNIADIERIAARI 351 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL-PQSLE--KTLSSM 438 +G P+D+A +RD + I DL +E LK + P++L + L Sbjct: 352 AVGNARPRDLASLRDSLFELAQI-------DLSANGSSLLETLKAVFPENLSTAEQLRQA 404 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + + + +DG + G LDE R +++ + L+ K E T + LK++ N Sbjct: 405 ILPEPSVWLKDGNVINHGFHPELDELRRIQNHGDEFLLDLEAKERERTGLSTLKVEFNRV 464 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 G++IE++ + A D + RQT+ N RF T EL E+++ A AL +E Sbjct: 465 HGFYIELSKTQAEQAPAD------YQRRQTLKNAERFITPELKAFEDKVLTAQEQALALE 518 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F+ + + L A++ A +D+ + LAKE+N+ RP + +++GR Sbjct: 519 KQLFDGVLKNLQTALPQLQKAAKAAAALDVLSTFSALAKERNFVRPEFADYPVIHIENGR 578 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ ++ F AN DL + +L LLTGPNMGGKST++RQ ALIV++A Sbjct: 579 HPVVEQQVRH-----FTANHTDLD-----HKHRLMLLTGPNMGGKSTYMRQVALIVLLAH 628 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 G +VPA A IG +D++F+R+G++D+LAS RSTFMVEM ETA IL+ AT QS V++DE+ Sbjct: 629 TGCFVPADAATIGPIDQIFTRIGASDDLASNRSTFMVEMSETAYILHHATEQSLVLMDEV 688 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGL++A A E+L + N+ L ATH+ ELT L ++ N L + + Sbjct: 689 GRGTSTFDGLALAHAVAEHLLQKNKSFSLFATHYFELTYLPEAHAAAVNMHLSALEQGQD 748 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 I+FLH++ PG A SYGI V KLAGLP + A L E N+ + ++ Sbjct: 749 IVFLHQIQPGPAGKSYGIAVAKLAGLPVRALKSAQKHLNGLENQAAANRPQLDIF----S 804 Query: 859 TKESKNNLSKNDKLFVEK-------------IKCLNLDEMSPLTALKTLYAVK 898 T S+ N FV+K ++ L+ D ++P AL LY +K Sbjct: 805 TMPSEKGDEPNVGNFVDKAEEKHFEGILAAALEKLDPDSLTPREALSELYRLK 857 >gi|110810486|sp|Q2FYZ9|MUTS_STAA8 RecName: Full=DNA mismatch repair protein mutS gi|14194229|gb|AAK56305.1|AF378369_1 DNA mismatch repair protein MutS [Staphylococcus aureus] gi|14970731|emb|CAC44463.1| MutS protein [Staphylococcus aureus] gi|32731677|gb|AAP87081.1| DNA mismatch repair protein MutS [Staphylococcus aureus] gi|32731691|gb|AAP87088.1| DNA mismatch repair protein MutS [Staphylococcus aureus] gi|329727795|gb|EGG64246.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus 21189] Length = 872 Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust. Identities = 318/924 (34%), Positives = 490/924 (53%), Gaps = 111/924 (12%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPMM+QY++IKS D L+F+R+GDFYE+F++DA ASR L ITLTKR I Sbjct: 1 MSNVTPMMQQYLKIKSEYQDCLLFFRLGDFYEMFYEDAKEASRVLEITLTKRDAKKENPI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A+ YI L+ G+++AICEQ+E P + K +VRR VVR+VTPGT+ E Sbjct: 61 PMCGVPYHSADSYIDTLVNNGYKVAICEQMEDP-----KQTKGMVRREVVRIVTPGTVME 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD-RLISDIMRIDPREIIFS 200 + +NY+++ + E A+++ D+STG K++ N + L+++I I+P E++ + Sbjct: 116 QGGVDDKQNNYILSFVMNQPEIALSYCDVSTGELKVTHFNDEATLLNEITTINPNEVVIN 175 Query: 201 E-------------------KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYY 241 + +E +E S+ +T + + D+ I ++ D Sbjct: 176 DNISDNLKRQINMVTETITVRETLSSEIYSVNQTEHKLMYQATQLLLDY-IHHTQKRD-- 232 Query: 242 NITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLE 301 S +E AAI Y+K +D A+ NLE Sbjct: 233 ----------LSHIEDVVQYAAIDYMK-----------------------MDFYAKRNLE 259 Query: 302 ILRTLS-GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL 360 + ++ S++ +LL +D + T G R + I PL +I RLD ++ F + I Sbjct: 260 LTESIRLKSKKGTLLWLMDETKTPMGARRLKQWIDRPLISKEQIEARLDIVDEFSAHFIE 319 Query: 361 INPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGA 420 + ++ L D+ R + R+ G +D+ ++ I NI L N + + Sbjct: 320 RDTLRTYLNQVYDIERLVGRVSYGNVNARDLIQLKHSISEIPNIKALL--NSMNQNTLVQ 377 Query: 421 VEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 V +L+ L L+ L L ++ P +DGG + G + LDE K +A LQ Sbjct: 378 VNQLEPLDDLLD-ILEQSLVEEPPISVKDGGLFKVGFNTQLDEYLEASKNGKTWLAELQA 436 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 K + T IK+LKI N GYFIE+T ++ L+ S+ ++ +QT+SN RF T EL Sbjct: 437 KERQRTGIKSLKISFNKVFGYFIEITRAN---LQNFEPSEFGYMRKQTLSNAERFITDEL 493 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 + E+ I A + A+ +E + F L + + +E L +++I+ +D + A +A++ N Sbjct: 494 KEKEDIILGAEDKAIELEYQLFVQLREEVKKYTERLQQQAKIISELDCLQSFAEIAQKYN 553 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 Y RP + + + RHP+VE+ + ++ N+C L N ++L+TGPNM Sbjct: 554 YTRPSFSENKTLELVESRHPVVERVM---DYNDYVPNNCRLD-----NETFIYLITGPNM 605 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GKST++RQ A+I IMAQMG+YVP A + I D++F+R+G+AD+L SG+STFMVEM+E Sbjct: 606 SGKSTYMRQVAIISIMAQMGAYVPCKEAVLPIFDQIFTRIGAADDLVSGKSTFMVEMLEA 665 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 L AT S +I DEIGRGT+T DGL++A A IEY+ ET+ + L +TH+HELT L + Sbjct: 666 QKALTYATEDSLIIFDEIGRGTSTYDGLALAQAMIEYVAETSHAKTLFSTHYHELTTLDQ 725 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 +L N + ++ +IFLHKV G D SYGIQV KLA LP VISRA IL FE Sbjct: 726 ALPSLKNVHVAANEYKGELIFLHKVKDGAVDDSYGIQVAKLADLPEKVISRAQVILSEFE 785 Query: 841 ------------KLYHH----NQKDMRLYYPEIQTKESKNNLSKND------KLF----- 873 K+ + NQ+++ L +E+ + LS+ D LF Sbjct: 786 ASAGKKSSISNLKMVENEPEINQENLNL-----SVEETTDTLSQKDFEQASFDLFENDQK 840 Query: 874 --VE-KIKCLNLDEMSPLTALKTL 894 +E +IK LNL M+P+ AL L Sbjct: 841 SEIELQIKNLNLSNMTPIEALVKL 864 >gi|296327904|ref|ZP_06870440.1| DNA mismatch repair protein MutS [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155038|gb|EFG95819.1| DNA mismatch repair protein MutS [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 896 Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust. Identities = 309/896 (34%), Positives = 519/896 (57%), Gaps = 47/896 (5%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TP+M+QY +IK + ++ +R+GDFYE+FF+DA +AS+ LG+TLTKR + G+D+ Sbjct: 20 MSADTPLMQQYKKIKEEYQNEILMFRLGDFYEMFFEDAKIASKELGLTLTKRNREKGQDV 79 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 P+ GVP H+ YI KL++ G+ +AIC+Q+E P A +V+R V R++TPGT+ + Sbjct: 80 PLAGVPYHSVASYIAKLVEKGYSVAICDQVEDPKSAT-----GIVKREVTRVITPGTIID 134 Query: 142 DQLLSPTDSNYLMAVARIRTE--WAIAWIDISTG---IFKISTSNH-DRLISDIMRIDPR 195 L ++NY+ + TE AIA+ DI+TG +F+I N ++ ++++ +I Sbjct: 135 VDFLDKNNNNYIACIKINTTENIVAIAYADITTGEFSVFEIKGKNFFEKALAEMNKIQAS 194 Query: 196 EIIFSEKELSHAEY----KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS 251 EI+ EK +++EY K LG PNV +ES + Y++I +++ F Sbjct: 195 EILLDEK--TYSEYIEILKEKISFLGVKFTEVPNV----RKAESYLTSYFDIMSIEVFSL 248 Query: 252 FSQ-VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR 310 S+ + + +A + Y + Q N+ E ++I + + ++ + ++NL ++ + Sbjct: 249 KSKDLAISTSANLLYYTDELQKGNELPFSKIEYKNIDNIMELNISTQNNLNLVPKRNEEA 308 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 + +LL +D +T G R + I +P D KI R +++F + +L I++ LK Sbjct: 309 KGTLLGVLDNCVTSVGSRELKKIIKNPFLDIEKIKQRQFYVDYFYNDVLLRENIREYLKD 368 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS 430 DV R ++ G KD+ +++ IR + + ++ +E++ ++ K+ Sbjct: 369 IYDVERIAGKIIYGTENGKDLLSLKESIRKSLETYKVLKEH---QEIKDILDIDVKILLD 425 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 + + +++ + P R+GG ++DG ++ LD+ R + K I ++ + E T IK Sbjct: 426 IYNKIELIINIEAPFSVREGGIIKDGYNSELDKLRKISKLGKDFILEIEQRERERTGIKG 485 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LKIK+N GYFIEVT ++ ++ +D +I +QT+ N R+ +L + E ++ A Sbjct: 486 LKIKYNKVFGYFIEVTKANEHLVPED------YIRKQTLVNSERYIVPDLKEYEEKVITA 539 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 + +E E F+ L++ I +SL + IA +DI A +A + +Y +P I + Sbjct: 540 KSKIEALEYELFKQLTSEIKGHIDSLYKLANRIANLDIVSNFAHIATKNSYVKPEIGDGD 599 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 +K GRHPIVE + S ++ ND L +DKN+ L +LTGPNM GKST+++Q Sbjct: 600 ILEIKGGRHPIVESLI---PSGTYVKNDIIL---DDKNN--LIILTGPNMSGKSTYMKQI 651 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 AL +IMA +GSYV A A I IVDK+F+RVG++D+L +G+STFM+EM E ASILN ATN+ Sbjct: 652 ALNIIMAHIGSYVAADCAKIPIVDKIFTRVGASDDLLTGQSTFMLEMTEVASILNNATNK 711 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 SF++LDEIGRGT+T DG+SIA A EY+H + + ATH+HELT+L K L+R N + Sbjct: 712 SFIVLDEIGRGTSTYDGISIATAITEYIHNNIGAKTIFATHYHELTELEKELERAINFRV 771 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE---KLYHHNQ 847 +V + + ++FL +++ G AD SYGI+V +L+G+P V++R+ ILK E L + Sbjct: 772 EVKEDGKNVVFLREIVKGGADKSYGIEVARLSGVPKEVLNRSNKILKKLETRKNLIENKI 831 Query: 848 K--DMRLY---YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 K M L+ + E +E LS+N+ +E +K ++L+ +SPL +L L +K Sbjct: 832 KAEQMILFGNGFEEENEEEETEILSENESKVLELLKNMDLNSLSPLESLLKLNELK 887 >gi|227115140|ref|ZP_03828796.1| DNA mismatch repair protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 840 Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust. Identities = 301/878 (34%), Positives = 474/878 (53%), Gaps = 48/878 (5%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY +K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IPM GVP Sbjct: 1 MMQQYFRLKAEHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H +Y+ +L+++G +AICEQ+ P +K V R VVR+VTPGT++++ LL Sbjct: 61 HHAVENYLARLVQMGESVAICEQVGDPAT-----SKGPVERKVVRIVTPGTISDEALLQE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKELSH 206 N L A+ + + A +DIS+G F++S + + + +++ R +P E+++ E Sbjct: 116 KQDNLLAAIWQDGRGFGYATLDISSGRFRVSEPDDRETMAAELQRTNPAELLYPES---- 171 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAIS 265 E L E + +P F+ + ++ + + FG +++ AA + Sbjct: 172 FESMDLIENRHGLR-RRPLWEFEPDTARQQLNLQFGTRDLTGFGVEQAKLALRAAGCLLQ 230 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y K TQ + P I E Q + +D+A R NLE+ + LSG E +L +D ++T Sbjct: 231 YAKDTQRTSLPHIRGITMERQQDGIIMDAATRRNLELTQNLSGGVENTLAAVLDCTVTAM 290 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINP-IQKILKSSPDVPRSLSRLKIG 384 G R+ I P D + R +I+ +Q+ I P +Q L+ D+ R L+RL + Sbjct: 291 GSRMLKRWIHMPSRDIDALKQRQQAISA-LQD---ITPDLQPYLRQVGDLERILARLALR 346 Query: 385 RGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 P+D+A +R + +I L D L + + +L LE+ + + Sbjct: 347 TARPRDLARMRHAFQQFPDIREQLAPLDTDSVRRLVSLIGQFDELRDLLERAVV----EA 402 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P RDGG + G A LDE R+L D + + L+++ E+ + LK+ N GY+ Sbjct: 403 PPVLVRDGGVIAPGYHAELDEWRALADGASDYLDRLEIREREKLGLDTLKVGFNGVHGYY 462 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 I+V+ + ++ ++ RQT+ N R+ EL + E+++ + AL +E + Sbjct: 463 IQVSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKALY 516 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 + L + ++ L ++ +A +D+ LA A NY P + + + GRHP+V Sbjct: 517 DELFDLLLPHLAELQQSAAALAELDVLTNLAERADTLNYVCPTLSDKPGIKITGGRHPVV 576 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 E+ L++ PFI+N L+ ++ ++TGPNMGGKST++RQ ALIV+MA +G + Sbjct: 577 EQVLRE----PFISNPLSLAPQR-----RMLIITGPNMGGKSTYMRQAALIVLMAHIGCF 627 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA A IG VD++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V++DEIGRGT Sbjct: 628 VPADQAVIGPVDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVLMDEIGRGT 687 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFL 802 +T DGLS+AWA E L + L ATH+ ELT L + ++ N L + + I F+ Sbjct: 688 STYDGLSLAWACAENLANRIKAMTLFATHYFELTTLPEKMEGVVNVHLDALEHGDTIAFM 747 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKES 862 H V G A SYG+ V LAG+P VI RA LK E L ++ + Sbjct: 748 HSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLKELETLSNNASSS--------HIDGA 799 Query: 863 KNNLSKNDK--LFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L ND+ +E ++ ++ D ++P AL LY +K Sbjct: 800 QLALLSNDEPSPAMEALEAIDPDALTPRQALDWLYQLK 837 >gi|254411238|ref|ZP_05025015.1| DNA mismatch repair protein MutS [Microcoleus chthonoplastes PCC 7420] gi|196181739|gb|EDX76726.1| DNA mismatch repair protein MutS [Microcoleus chthonoplastes PCC 7420] Length = 906 Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust. Identities = 296/851 (34%), Positives = 457/851 (53%), Gaps = 58/851 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TPMM+ + E+K P++++ YR+GDFYE FF DA + L + LT + GK +G+ +PM Sbjct: 43 TPMMQHFAELKDQYPNAVLLYRVGDFYETFFQDARRVAEELELVLTSKEAGKGVGR-VPM 101 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H+ + +L++ G+ I IC+Q+E A K G + V+R + R++TPGTLTE Sbjct: 102 TGVPHHSIERHATQLVEKGYAIVICDQVEDASIAAKEGRQ--VKREITRILTPGTLTEAG 159 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIF--- 199 +L+ +N+L AV W +A+ DISTG F ++ + L+ +++R+ P E++ Sbjct: 160 MLNAKRNNFLAAVVIAGNHWGLAYADISTGEFFTTQATDLELLVQELLRLHPSEVLIPTN 219 Query: 200 ----------SEKELSHAEY--KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVD 247 E+ S ++ S +L +P F S + R+ + + + +++ Sbjct: 220 APDLGSMLRPGERSESLPDWFPSSFCYSL------RPQTPFRSSEARQRLLERFKVRSLE 273 Query: 248 TFGS-FSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL 306 G + AA + Y+++TQ N + + + L +D +R NLEI T+ Sbjct: 274 GMGCEHLPLGVRAAGGLLEYLEETQKENYVALQHLRTYTLADYLILDYQSRRNLEITTTV 333 Query: 307 -SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQ 365 + SLL +D + T GGR + PL D I R D+I +N L ++ Sbjct: 334 RDNTFHGSLLWALDQTSTSMGGRALRRWLLQPLLDVKGIRARQDTIQELTENTGLREDLR 393 Query: 366 KILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLK 425 ++L+ D+ R R G +D+ + D + ++ L P ++ L+ Sbjct: 394 QLLRGIYDLERLTGRASSGTANARDLVALADSLLKLPDLAELAAYGGSP-----YLKTLQ 448 Query: 426 KLPQSLE---KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 P LE +++ + L + P ++G +R G + LDE R + + ++ IA+L++ Sbjct: 449 TFPPELEQLGQSIRAHLVESPPLQIKEGNLIRPGVNDQLDEMRRMAEADQQWIANLEVSE 508 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 + T I NLK+ +N GY+I + S A + D +I +QT++N R+ T +L + Sbjct: 509 RDRTGITNLKVGYNKTFGYYISIARSKAD------QVPDEYIRKQTLTNEERYITPDLKE 562 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E RI A + +E E F L + ++ + N S+ +A ID+ LA +A Q YC Sbjct: 563 RETRILTARDDLNRLEYEIFVGLRTQVGNYAQLIRNLSRAVAAIDVLSGLAEIAVRQGYC 622 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGK----------- 651 RP + + DGRHP+VEK+L F+ N L +S Sbjct: 623 RPTMVEGREITIIDGRHPVVEKSL---PIGFFVPNSAYLGWEESTSSSAEKTKTENHQRP 679 Query: 652 -LWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGR 710 L +LTGPN GKS +LRQ LI IMAQ GS+VPA+ A +GI D++F+RVG+ D+LA+G+ Sbjct: 680 DLIILTGPNASGKSCYLRQVGLIQIMAQTGSFVPATSATLGICDRIFTRVGAVDDLATGQ 739 Query: 711 STFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLAT 770 STFMVEM ETA+ILN ATN+S V+LDEIGRGTAT DGLSIAWA EYL + R + AT Sbjct: 740 STFMVEMNETANILNHATNKSLVLLDEIGRGTATFDGLSIAWAVAEYLSLEIQARTIFAT 799 Query: 771 HFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVIS 830 H+HEL +L+ L N + V + + IIFLH+V PG AD SYGI+ G+LAGLP VI Sbjct: 800 HYHELNELASILDNVANYQVTVKELPDEIIFLHQVQPGGADKSYGIEAGRLAGLPPAVIQ 859 Query: 831 RAYDILKTFEK 841 RA ++ EK Sbjct: 860 RAKQVMGQIEK 870 >gi|325205105|gb|ADZ00559.1| DNA mismatch repair protein MutS [Neisseria meningitidis M01-240355] Length = 864 Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust. Identities = 308/893 (34%), Positives = 476/893 (53%), Gaps = 62/893 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM+QY+ IK+ + D LVFYRMGDFYE+FFDDA+ A++ L ITLT RG+ G+ + M G Sbjct: 7 SPMMQQYLGIKAQHTDKLVFYRMGDFYEMFFDDAVEAAKLLDITLTTRGQVDGEPVKMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ +L+K+G +AICEQ+ + K V R VVR+VTPGTLT+ LL Sbjct: 67 VPFHAAEQYLARLVKLGKSVAICEQV-----GEVGAGKGPVERKVVRIVTPGTLTDSALL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 ++N ++AV+ + +AW + +G FK + D+L ++ R+ EI+ + Sbjct: 122 EDKETNRIVAVSPDKKYIGLAWASLQSGEFKTKLTTVDKLDDELARLQAAEILLPDS--- 178 Query: 206 HAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQ---VEKTAAA 261 K+ + V + N + F E + +Y+ + FG + V AA Sbjct: 179 ----KNAPQLQTASGVTRLNAWQFAADAGEKLLTEYFGCQDLRGFGLDGKEHAVAIGAAG 234 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 A ++YI+ TQ + + E + +D+A R NLEI +TLSG + +L+ T+D Sbjct: 235 ALLNYIRLTQNLMPQHLDGLSLETDSQYIGMDAATRRNLEITQTLSGKKSPTLMSTLDLC 294 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G RL A + PL + I R +++ P+Q LK+ D+ R +R+ Sbjct: 295 ATHMGSRLLALWLHHPLRNRAHIRARQEAVAALESQ---YKPLQCRLKNIADIERIAARI 351 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL-PQSLE--KTLSSM 438 +G P+D+A +RD + I DL +E LK + P++L + L Sbjct: 352 AVGNARPRDLASLRDSLFELAQI-------DLSANGSSLLETLKAVFPENLSTAEQLRQA 404 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + + + +DG + G LDE R +++ + L+ K E T + LK++ N Sbjct: 405 ILPEPSVWLKDGNVINHGFHPELDELRRIQNHGDEFLLDLEAKERERTGLSTLKVEFNRV 464 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 G++IE++ + A D + RQT+ N RF T EL E+++ A AL +E Sbjct: 465 HGFYIELSKTQAEQAPAD------YQRRQTLKNAERFITPELKAFEDKVLTAQEQALALE 518 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F+ + + L A++ A +D+ + LAKE+N+ RP + +++GR Sbjct: 519 KQLFDGVLKNLQTALPQLQKAAKAAAALDVLSTFSALAKERNFVRPEFADYPVIHIENGR 578 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ ++ F AN DL + +L LLTGPNMGGKST++RQ ALIV++A Sbjct: 579 HPVVEQQVRH-----FTANHTDLD-----HKHRLMLLTGPNMGGKSTYMRQVALIVLLAH 628 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 G +VPA A IG +D++F+R+G++D+LAS RSTFMVEM ETA IL+ AT QS V++DE+ Sbjct: 629 TGCFVPADAATIGPIDQIFTRIGASDDLASNRSTFMVEMSETAYILHHATEQSLVLMDEV 688 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGL++A A E+L + N+ L ATH+ ELT L ++ N L + + Sbjct: 689 GRGTSTFDGLALAHAVAEHLLQKNKSFSLFATHYFELTYLPEAHTAALNMHLSALEQGQD 748 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 I+FLH++ PG A SYGI V KLAGLP + A L E N+ + ++ Sbjct: 749 IVFLHQIQPGPAGKSYGIAVAKLAGLPVRALKSAQKHLNELEDQAAANRPQLDIF----S 804 Query: 859 TKESKNNLSKNDKLFVEK-------------IKCLNLDEMSPLTALKTLYAVK 898 T S+ N FV+K ++ L+ D ++P AL LY +K Sbjct: 805 TMPSEKGDEPNVGNFVDKAEEKHFEGILAAALEKLDPDSLTPREALSELYRLK 857 >gi|207722888|ref|YP_002253322.1| DNA mismatch repair protein MutS [Ralstonia solanacearum MolK2] gi|206588072|emb|CAQ18652.1| dna mismatch repair protein muts [Ralstonia solanacearum MolK2] Length = 885 Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust. Identities = 297/829 (35%), Positives = 443/829 (53%), Gaps = 50/829 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+++KS +P +LVFYRMGDFYELFF+DA A+R L ITLT RG G+ I M G Sbjct: 22 TPMMQQYLKLKSAHPHTLVFYRMGDFYELFFEDAEKAARLLDITLTSRGSTNGQPIRMAG 81 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H Y+ KL+K+G AICEQI P K V R VVR+VTPGTLT+ LL Sbjct: 82 VPFHAVEQYLAKLVKLGESAAICEQIGDPAT-----TKGPVERKVVRVVTPGTLTDAALL 136 Query: 146 SPTDSNYLMAVARIRTEWA------IAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 S +N+L+A+A+I + +AW+++ G ++ D+L ++ RI P E++ Sbjct: 137 SDKVNNHLLAIAQIPGKRGAAPLVGLAWLNLVGGELRLMECGADQLDRELERIRPAEVLS 196 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 + L+ Y L P+ FD R+ + + ++ FG+ + A Sbjct: 197 DDATLNAIAYDVARTRL-------PDWHFDVEAGARRLREQLGVASLVAFGAETLTAALA 249 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTL-----FI--DSAARSNLEILRTLSGSREQ 312 AA A+ T G R I T+ FI D+A R NLE+ TL G Sbjct: 250 AAGALLNYAAA------TQGQSLRHVIGLTVEHESEFIGLDTATRRNLELTETLRGQESP 303 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 +L +D T G RL + PL D R +I + ++ L++ Sbjct: 304 TLFSLLDTCSTSMGSRLLRHWLHHPLRDRAVPQARQQAIEVLLAGDW--QSLRGTLRTLS 361 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE 432 DV R RL + P+D++ +RD + + + ++D L G + +P+ Sbjct: 362 DVERITGRLALLSARPRDLSSLRDTLARLPEVRDQLPQSD-AAPLLGDLHAALAIPEDAH 420 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 L + + RDGG + G DA LDE R + + + + L+ + E T I NL+ Sbjct: 421 ALLQHAVMAEPAAMVRDGGVIARGYDADLDELRDISENCGQFLVDLEARERERTGIANLR 480 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 +++N G++IEVT+ A+ + D + RQT+ N R+ T EL E++ +A + Sbjct: 481 VEYNRVHGFYIEVTNGQAAKVPDD------YRRRQTLKNAERYITPELKTFEDKALSAQD 534 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 AL E +E L ++ + + +A D+ LA A ++ P + ++ Sbjct: 535 RALSREKSLYEDLLQKLLPHLPAFKRIAAALAQADVLATLAERAHALSWSCPALTDAPGI 594 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 + RHP+VE+ ++Q F+ANDC L + + KL L+TGPNMGGKSTF+RQ AL Sbjct: 595 ELIRARHPVVEQQVEQ-----FVANDCVL-----QETRKLLLITGPNMGGKSTFMRQTAL 644 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 +V++A +G++VPA A IG +D++F+R+G+AD+LA GRSTFMVEM E A+IL++AT S Sbjct: 645 VVLLAYVGAFVPADAATIGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILHRATPNSL 704 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 V++DEIGRGT+T DGL++AWA +L NR L ATH+ ELT L + + N L Sbjct: 705 VLMDEIGRGTSTFDGLALAWAIARHLLSHNRSHTLFATHYFELTQLPQEFAQASNVHLSA 764 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 + +GI+FLH V G A SYG+QV +LAG+P VI A L E+ Sbjct: 765 VEHGDGIVFLHAVQEGPASQSYGLQVAQLAGVPQPVIRAARKRLAWLEQ 813 >gi|172087850|emb|CAQ35081.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus] Length = 872 Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust. Identities = 317/924 (34%), Positives = 490/924 (53%), Gaps = 111/924 (12%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPMM+QY++IKS D L+F+R+GDFYE+F++DA ASR L ITLTKR I Sbjct: 1 MSNVTPMMQQYLKIKSEYQDCLLFFRLGDFYEMFYEDAKEASRVLEITLTKRDAKKENPI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A+ YI L+ G+++AICEQ+E P + K +VRR VVR+VTPGT+ E Sbjct: 61 PMCGVPYHSADSYIDTLVNNGYKVAICEQMEDP-----KQTKGMVRREVVRIVTPGTVME 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD-RLISDIMRIDPREIIFS 200 + +NY+++ + E A+++ D+STG K++ N + L+++I I+P E++ + Sbjct: 116 QGGVDDKQNNYILSFVMNQPEIALSYCDVSTGELKVTHFNDEATLLNEITTINPNEVVIN 175 Query: 201 E-------------------KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYY 241 + +E +E S+ +T + + D+ I ++ D Sbjct: 176 DNISDNLKRQINMVTETITVRETLSSEIYSVNQTEHKLMYQATQLLLDY-IHHTQKRD-- 232 Query: 242 NITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLE 301 S +E AAI Y+K +D A+ NLE Sbjct: 233 ----------LSHIEDVVQYAAIDYMK-----------------------MDFYAKRNLE 259 Query: 302 ILRTLS-GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL 360 + ++ S++ +LL +D + T G R + I PL +I RLD ++ F + I Sbjct: 260 LTESIRLKSKKGTLLWLMDETKTPMGARRLKQWIDRPLISKEQIEARLDIVDEFSAHFIE 319 Query: 361 INPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGA 420 + ++ L D+ R + R+ G +D+ ++ I NI L N + + Sbjct: 320 RDTLRTYLNQVYDIERLVGRVSYGNVNARDLIQLKHSISEIPNIKALL--NSMNQNTLVQ 377 Query: 421 VEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 V +L+ L L+ L L ++ P +DGG + G + LDE K +A LQ Sbjct: 378 VNQLEPLDDLLD-ILEQSLVEEPPISVKDGGLFKVGFNTQLDEYLEASKNGKTWLAELQA 436 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 K + T IK+LKI N GYFIE+T ++ L+ S+ ++ +QT+SN RF T EL Sbjct: 437 KERQRTGIKSLKISFNKVFGYFIEITRAN---LQNFEPSEFGYMRKQTLSNAERFITDEL 493 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 + E+ I A + A+ +E + F L + + +E L +++I+ +D + A +A++ N Sbjct: 494 KEKEDIILGAEDKAIELEYQLFVQLREEVKKYTERLQQQAKIISELDCLQSFAEIAQKYN 553 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 Y RP + + + RHP+VE+ + ++ N+C L N ++L+TGPNM Sbjct: 554 YTRPSFSENKTLELVESRHPVVERVM---DYNDYVPNNCRLD-----NETFIYLITGPNM 605 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GKST++RQ A+I IMAQMG+YVP A + I D++F+R+G+AD+L SG+STFMVEM+E Sbjct: 606 SGKSTYMRQVAIISIMAQMGAYVPCKEAVLPIFDQIFTRIGAADDLVSGKSTFMVEMLEA 665 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 L AT S +I DEIGRGT+T DGL++A A +EY+ ET+ + L +TH+HELT L + Sbjct: 666 QKALTYATEDSLIIFDEIGRGTSTYDGLALAQAMVEYVAETSHAKTLFSTHYHELTTLDQ 725 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 +L N + ++ +IFLHKV G D SYGIQV KLA LP VISRA IL FE Sbjct: 726 ALPSLKNVHVAANEYKGELIFLHKVKDGAVDDSYGIQVAKLADLPEKVISRAQVILSEFE 785 Query: 841 ------------KLYHH----NQKDMRLYYPEIQTKESKNNLSKND------KLF----- 873 K+ + NQ+++ L +E+ + LS+ D LF Sbjct: 786 ASAGKKSSISNLKMVENEPEINQENLNL-----SVEETTDTLSQKDFEQASFDLFENDQE 840 Query: 874 --VE-KIKCLNLDEMSPLTALKTL 894 +E +IK LNL M+P+ AL L Sbjct: 841 SEIELQIKNLNLSNMTPIEALVKL 864 >gi|325143562|gb|EGC65883.1| DNA mismatch repair protein MutS [Neisseria meningitidis M01-240013] Length = 864 Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust. Identities = 304/889 (34%), Positives = 473/889 (53%), Gaps = 54/889 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM+QY+ IK+ + D LVFYRMGDFYE+FFDDA+ A++ L ITLT RG+ G+ + M G Sbjct: 7 SPMMQQYLGIKAQHTDKLVFYRMGDFYEMFFDDAVEAAKLLDITLTTRGQVDGEPVKMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ +L+K+G +AICEQ+ + K V R VVR+VTPGTLT+ LL Sbjct: 67 VPFHAAEQYLARLVKLGKSVAICEQV-----GEVGAGKGPVERKVVRIVTPGTLTDSALL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 ++N ++AV+ + +AW + +G FK + D+L ++ R+ EI+ + Sbjct: 122 EDKETNRIVAVSPDKKYIGLAWASLQSGEFKTKLTTVDKLDDELARLQAAEILLPDS--- 178 Query: 206 HAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQ---VEKTAAA 261 K+ + V + N + F E + +Y+ + FG + V AA Sbjct: 179 ----KNAPQLQTASGVTRLNAWQFAADAGEKLLTEYFGCQDLRGFGLDGKEHAVAIGAAG 234 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 A ++YI+ TQ + + E + +D+A R NLEI +TLSG + +L+ T+D Sbjct: 235 ALLNYIRLTQNLMPQHLDGLSLETDSQYIGMDAATRRNLEITQTLSGKKSPTLMSTLDLC 294 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G RL A + PL + I R +++ P+Q LK+ D+ R +R+ Sbjct: 295 ATHMGSRLLALWLHHPLRNRAHIRARQEAVAALESQ---YKPLQCRLKNIADIERIAARI 351 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL-PQSLE--KTLSSM 438 +G P+D+A +RD + I DL +E LK + P++L + L Sbjct: 352 AVGNARPRDLASLRDSLFELAQI-------DLSANGSSLLETLKAVFPENLSTAEQLRQA 404 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + + + +DG + G LDE R +++ + L+ K E T + LK++ N Sbjct: 405 ILPEPSVWLKDGNVINHGFHPELDELRRIQNHGDEFLLDLEAKERERTGLSTLKVEFNRV 464 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 G++IE++ + A D + RQT+ N RF T EL E+++ A AL +E Sbjct: 465 HGFYIELSKTQAEQAPAD------YQRRQTLKNAERFITPELKAFEDKVLTAQEQALALE 518 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F+ + + L A++ A +D+ + LAKE+N+ RP + +++GR Sbjct: 519 KQLFDGVLKNLQTTLPQLQKAAKAAAALDVLSTFSALAKERNFARPEFADYPVIHIENGR 578 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ ++ F AN DL + +L LLTGPNMGGKST++RQ ALIV++A Sbjct: 579 HPVVEQQVRH-----FTANHTDLD-----HKHRLMLLTGPNMGGKSTYMRQVALIVLLAH 628 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 G +VPA A IG D++F+R+G++D+LAS RSTFMVEM ETA IL+ AT QS V++DE+ Sbjct: 629 TGCFVPADAATIGPFDQIFTRIGASDDLASNRSTFMVEMSETAYILHHATEQSLVLMDEV 688 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGL++A A E+L + N+ L ATH+ ELT L ++ N L + + Sbjct: 689 GRGTSTFDGLALAHAVAEHLLQKNKSFSLFATHYFELTYLPEAHAAAVNMHLSALEQGQD 748 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY---- 854 I+FLH++ PG A SYGI V KLAGLP + A L E N+ + ++ Sbjct: 749 IVFLHQIQPGPAGKSYGIAVAKLAGLPVRALKSAQKHLNGLENQAAANRPQLDIFSTMPS 808 Query: 855 -----PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P + K+ + + ++ L+ D ++P AL LY +K Sbjct: 809 EKGDEPNVGNFVDKSEEKHFEGILAAALEKLDPDSLTPREALSELYRLK 857 >gi|257885710|ref|ZP_05665363.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,231,501] gi|257821566|gb|EEV48696.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,231,501] Length = 881 Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust. Identities = 302/907 (33%), Positives = 492/907 (54%), Gaps = 68/907 (7%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM QY+ IK+ D+ +FYR+GDFYELF++DA+ AS+ L +TLT R ++ + IPMC Sbjct: 7 NTPMMEQYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELTLTSRNRNAEEPIPMC 66 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H A YI LI+ G+++AICEQ+E P + K +V+R V++LVTPGT+ + + Sbjct: 67 GVPHHAAQGYIDALIEKGYKVAICEQVEDP-----KTTKGMVKREVIQLVTPGTVMDSKG 121 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 LS D+N+L AV E+ A+ D+STG K + + + ++++ + +E++ E Sbjct: 122 LSAKDNNFLTAVVSQGNEFGFAYADLSTGELKTARLHDEEAVLNEASALQTKELVLG-SE 180 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 ++ + L LG V Q + + E+ + VD +EK A Sbjct: 181 ITDTLREQLSGRLGLVFSQQ------NEMEENAEFSFLTSELVDP------LEKEATGKL 228 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 ++Y+ TQ + I L +D ++ NLE+ +++ +G + +LL +D + Sbjct: 229 LTYLSVTQKRSLAHIQKAVEYQPDHFLKMDYYSKFNLELSQSIRTGKKHGTLLWLLDETK 288 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGRL + + PL + +I R + + + + +Q L D+ R R+ Sbjct: 289 TAMGGRLLKQWLDRPLIQAKQIKARQEMVASLLDSYFERIDLQSALTKVYDLERLAGRVA 348 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 G +D+ ++ + I L + + L ++ + L Q +++ + Sbjct: 349 FGNVNGRDLIQLKTSLEQVPMIRGLIEGIDQGQWQSLLSEMQPMDHLVQLIDQAIQ---- 404 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 DD P +G ++DG + LD RS K+ +A L+ K +ET IKNLKI N G Sbjct: 405 DDPPLQITEGNIIKDGFNEQLDMYRSAMRNGKKWLAELEAKERQETGIKNLKIGFNRVFG 464 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IE+T A++ +LE +R +QT++N RF T EL +LE +I A ++ +E + Sbjct: 465 YYIEITK--ANLGNAELEKYER---KQTLANAERFITPELKELETQILEAEEKSVDLEYQ 519 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP-IIDNSTNFIVKDGRH 619 F + + + + L ++ I+ +D+ + A +++ Y RP ++ + ++KDGRH Sbjct: 520 LFLAVREEVKKAIQPLQVLAKAISAVDVLQSFATISERYQYVRPELVSDKHQLLIKDGRH 579 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VEK L Q +I N +++ + L+TGPNM GKST++RQ AL V+MAQM Sbjct: 580 PVVEKVLGHQE---YIPNSVEMA-----EDEMILLITGPNMSGKSTYMRQLALTVLMAQM 631 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 G +VPA A + I D++F+R+G++D+L +G+STFMVEM+E L AT S ++ DE+G Sbjct: 632 GCFVPAKQAVLPIFDRIFTRIGASDDLIAGQSTFMVEMMEANQALRYATPNSLILFDELG 691 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A A IEY+H + + L +TH+HELT L K L + N + + + + Sbjct: 692 RGTATYDGMALAQAIIEYIHRHVQAKTLFSTHYHELTVLEKELPQLKNVHVGAVEKDGEV 751 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL--YHH------NQKDMR 851 +FLHK++ G AD SYGI V K+AGLP+ ++ RA DIL T E HH +K Sbjct: 752 VFLHKMMDGPADKSYGIHVAKIAGLPSNLLERAADILHTLENGDNGHHTVPAEVEEKTKT 811 Query: 852 LYYPEIQTKESKNN--------------------LSKNDKLFVEKIKCLNLDEMSPLTAL 891 +I+ K N LS+N+ +E +K +NL EM+P+ AL Sbjct: 812 AKQEQIKPPAEKVNQDHIKDRVKEENQQLSLFSELSENETEVIESLKKINLLEMTPMDAL 871 Query: 892 KTLYAVK 898 TLY ++ Sbjct: 872 NTLYELQ 878 >gi|150017427|ref|YP_001309681.1| DNA mismatch repair protein MutS [Clostridium beijerinckii NCIMB 8052] gi|189030761|sp|A6LWJ5|MUTS_CLOB8 RecName: Full=DNA mismatch repair protein mutS gi|149903892|gb|ABR34725.1| DNA mismatch repair protein MutS [Clostridium beijerinckii NCIMB 8052] Length = 928 Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust. Identities = 293/822 (35%), Positives = 481/822 (58%), Gaps = 34/822 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM +Y++ K D ++FYR+GDFYE+FFDDA+ SR L + LT + L + PMCG Sbjct: 4 TPMMVEYMKTKEEYSDCILFYRLGDFYEMFFDDAITVSRELELVLTGKNCGLEERAPMCG 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H A YI +L+ G+++AICEQ+E P EAK +V+R VV+++TPGT + Sbjct: 64 IPHHAAAAYIPRLVNKGYKVAICEQLEDPKEAK-----GIVKRGVVKIITPGTFIDANSS 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREIIFSEKE 203 D+ YLM + +A DISTG FK ++ ++ + L+ +I ++ P+EI+ +K Sbjct: 119 LENDNTYLMTIYESDERIGLAVSDISTGEFKTTSFDNIKITLLDEISKVAPKEILV-DKN 177 Query: 204 LSHAEYKSLFETLGNVAVA--QPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 +S SL + + + A F + +S+ I D + + ++ G ++ E ++ Sbjct: 178 ISQ----SLIDDIKGITTALITEKDFNEFIVSKEEIIDQF--SDLEVSGLVNERE-ISSR 230 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 + YI +TQ ++ I E+ +I + + ID +R NLE+ ++ S++ SLL +D Sbjct: 231 VLLKYIYETQKMSLTNINLLEQYEIINYMTIDGNSRRNLELTESIREKSKKGSLLWVLDK 290 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 S T GGR + I PL ++I RL ++ + ++ LK D+ R + + Sbjct: 291 SATSMGGRTIRKWIEEPLIIKSEIEKRLSGVSEAFSSISFNEDLRSSLKDIYDIERIVGK 350 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + KD+ ++ + +I L L E L+ E L +L + + L S + Sbjct: 351 ISNKNVNAKDMLSLKASLDKLPSIKEL-LGTANSELLKEYYENLDELSD-IRELLESSIK 408 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 ++ ++G ++DG ++ +DE R + K IA+L+ + E T IK+LK+ +N G Sbjct: 409 EEPSLSIKEGNIIKDGYNSEVDELRQSKLHGKEWIAALENREREFTGIKSLKVGYNKVFG 468 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IE++ S+ + + + R++ +QT++N R+ T EL +E++I A + +E Sbjct: 469 YYIEISKSNYNSI-----PEGRYVRKQTLANAERYITEELKIMEDKILGAEEKLINLEYS 523 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F + ++I ++ L ++++I+ +D LA++A E +Y +P I+ + DGRHP Sbjct: 524 LFTDIRDSIEKEIARLKKSARIISNLDGISTLALIALENDYVKPEINEDGIIEIVDGRHP 583 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + + F++N+ L +++ +L L+TGPNM GKST++RQ ALI +MAQ+G Sbjct: 584 VVEKVIGRGE---FVSNNTTL----NQSDKELLLITGPNMAGKSTYMRQVALITLMAQIG 636 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPAS A+I I DK+F+R+G++D+LA G+STFMVEM E ++IL AT++S V+LDE+GR Sbjct: 637 SFVPASSANISICDKIFTRIGASDDLAGGKSTFMVEMWEVSNILKNATSKSLVLLDEVGR 696 Query: 741 GTATLDGLSIAWATIEYL--HETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GT+T DGLSIAW+ IEY+ +E RC+ L ATH+HEL L L N ++ V + Sbjct: 697 GTSTYDGLSIAWSVIEYITGNENLRCKTLFATHYHELVKLEGVLPGVKNYSVAVKKMKDS 756 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 +IFL K++ G AD SYGI+V KLAGLP+ VI+RA +IL E Sbjct: 757 VIFLRKIVEGGADESYGIEVAKLAGLPDDVINRAKEILLGLE 798 >gi|194099812|ref|YP_002002947.1| DNA mismatch repair protein MutS [Neisseria gonorrhoeae NCCP11945] gi|238693214|sp|B4RPP9|MUTS_NEIG2 RecName: Full=DNA mismatch repair protein mutS gi|193935102|gb|ACF30926.1| DNA mismatch repair protein [Neisseria gonorrhoeae NCCP11945] Length = 864 Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust. Identities = 311/893 (34%), Positives = 474/893 (53%), Gaps = 62/893 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM+QY+ IK+ + D LVFYRMGDFYELF DDA+ A++ L ITLT RG+ G I M G Sbjct: 7 SPMMQQYLGIKAQHTDKLVFYRMGDFYELFLDDAVEAAKLLDITLTTRGQMDGVPIKMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ +L+K+G +AICEQ+ + K V R VVR+VTPGTLT+ LL Sbjct: 67 VPFHAAEQYLARLVKLGKSVAICEQV-----GEVGAGKGPVERKVVRIVTPGTLTDSALL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 ++N ++AV+ + +AW + +G FK + D+L ++ R+ EI+ + Sbjct: 122 EDKETNRIVAVSPDKKYIGLAWASLQSGEFKTKLTTADKLNDELARLQAAEILLPDS--- 178 Query: 206 HAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQ---VEKTAAA 261 K+ + V + N + F E + +Y+ + FG S+ V AA Sbjct: 179 ----KNAPQLQTASGVTRLNAWQFAADAGEKLLTEYFGCQDLRGFGLDSKEHAVSIGAAG 234 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 A ++YI+ TQ + + E + +D+A R NLEI +TLSG + +L +D Sbjct: 235 ALLNYIRLTQNLMPQHLDGLSLETDSQYIGMDAATRRNLEITQTLSGKKTPTLFSILDGC 294 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G RL A + PL + I R +++ P+Q LKS D+ R +R+ Sbjct: 295 ATHMGSRLLALWLHHPLRNRAHIRARQEAVTALESQ---YEPLQCHLKSIADIERIAARI 351 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL-PQSL--EKTLSSM 438 +G P+D+A +RD + I DL +E LK + P++L +TL + Sbjct: 352 AVGNARPRDLASLRDSLFELAQI-------DLSATGSSLLETLKAVFPETLPVAETLKAA 404 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + + + +DG + G LDE R +++ + L+ K E T + LK++ N Sbjct: 405 VMPEPSVWLKDGNVINHGFHPELDELRRIQNHGDEFLLDLEAKERERTGLSTLKVEFNRV 464 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 G++IE++ + A D + RQT+ N RF T EL E+++ A + AL +E Sbjct: 465 HGFYIELSKTQAEQAPAD------YQRRQTLKNAERFITPELKAFEDKVLTAQDQALALE 518 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F+ + + L A++ A +D+ + LAKE+N+ RP + +++GR Sbjct: 519 KQLFDGVLKNLRTALPQLQKAAKAAAALDVLSTFSALAKERNFVRPEFADYPVVHIENGR 578 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ ++ F AN DL + +L LLTGPNMGGKST++RQ ALIV++A Sbjct: 579 HPVVEQQVRH-----FTANHTDLD-----HKHRLMLLTGPNMGGKSTYMRQVALIVLLAH 628 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 G +VPA A IG VD++F+R+G++D+LAS RSTFMVEM ETA IL+ AT Q V++DE+ Sbjct: 629 TGCFVPADAATIGPVDQIFTRIGASDDLASNRSTFMVEMSETAYILHHATEQIIVLMDEV 688 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGL++A A E+L + N+ L ATH+ ELT L ++ N L + Sbjct: 689 GRGTSTFDGLALAHAIAEHLLQKNKSFSLFATHYFELTYLPEAHAAAVNMHLSALEQGRD 748 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 I+FLH++ PG A SYGI V KLAGLP + A L E N+ + ++ Sbjct: 749 IVFLHQIQPGPAGKSYGIAVAKLAGLPVRALKAAQKHLNGLENQAAANRPQLDIF----S 804 Query: 859 TKESKNNLSKNDKLFVEK-------------IKCLNLDEMSPLTALKTLYAVK 898 T S+ N FV+K ++ L+ D ++P AL LY +K Sbjct: 805 TMPSEKGDEPNVDCFVDKAEEKHFEGILAAALENLDPDSLTPREALSELYRLK 857 >gi|88191725|pdb|1WB9|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme Muts, E38t Mutant, In Complex With A G.T Mismatch gi|88191726|pdb|1WB9|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme Muts, E38t Mutant, In Complex With A G.T Mismatch Length = 800 Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust. Identities = 300/840 (35%), Positives = 456/840 (54%), Gaps = 62/840 (7%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+ +K+ +P+ L+FYRMGDFY LF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLRLKAQHPEILLFYRMGDFYTLFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEG---RRGLRRRPLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAGLQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LPE LR +E + P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFIDKPGIRITEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+ Sbjct: 620 KSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + + Sbjct: 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 740 EGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 799 >gi|150024498|ref|YP_001295324.1| DNA mismatch repair protein [Flavobacterium psychrophilum JIP02/86] gi|189030723|sp|A6GWN3|MUTS_FLAPJ RecName: Full=DNA mismatch repair protein mutS gi|149771039|emb|CAL42506.1| DNA mismatch repair protein MutS [Flavobacterium psychrophilum JIP02/86] Length = 866 Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust. Identities = 303/883 (34%), Positives = 498/883 (56%), Gaps = 41/883 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M+QY EIK PD+ + +R+GDFYE F DDA+ AS+ LGITLTKRG + + G Sbjct: 9 TPLMKQYNEIKRKYPDACLLFRVGDFYETFGDDAVRASKILGITLTKRGAGSPTETALAG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H+ N Y+ KL+K G R+AIC+Q+E P + K++V+R V LVTPG D++L Sbjct: 69 FPHHSINTYLPKLVKAGLRVAICDQLEDP-----KMTKTIVKRGVTELVTPGVSMNDEVL 123 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 + +N+L ++ + ++++D+STG F S N + + + P EI+ ++ + Sbjct: 124 NSKTNNFLASIYFGKKIIGVSFLDVSTGEFLTSEGNEEYIDKLLQNFSPSEILVPKQ--N 181 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI- 264 ++K F + + V+ + +E+ + +++ ++ FG A+ AI Sbjct: 182 KGDFKEKFGDNFHAFYLEDWVYKEDYATET-LTNHFQTNSLKGFGIEELASGIIASGAIL 240 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 Y+ +TQ I R + +++D NLE+ + + +LL ID +++ Sbjct: 241 YYLSETQHNKIQHITSIHRIAEDAYVWMDRFTIRNLELYHSYN-PNAVTLLDIIDKTLSP 299 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 GGR+ +A PL ++T I +R + + +F + ++ +Q +K D+ R +S++ G Sbjct: 300 MGGRMLKRWLALPLKNATIIKSRHEVVAYFKDHQEILQKVQNQIKQISDLERLISKVAAG 359 Query: 385 RGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLP 444 R P++I +++ + + I I L LK+ P+E + L + + + L+ + P Sbjct: 360 RISPREIIYLKESLDAIIPIKELALKS--PQEAVKVIGDSLHSCDLLREKIKTTLNQEAP 417 Query: 445 TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIE 504 G + G LDE R + K + ++ + +E+T I +LKI NN GY+IE Sbjct: 418 VAISKGNAIAAGIHPELDELRGISALGKEYLEGIEKRESEKTGISSLKISFNNVFGYYIE 477 Query: 505 VTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEI 564 V ++ + + +I +QT+ N R+ T EL + E +I A IE + FE Sbjct: 478 VRNTHKDKVPTE------WIRKQTLVNAERYITEELKEYETKILGAEEKIQQIENQLFEQ 531 Query: 565 LSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEK 624 L + I + + + +IA +D I+ LA + Y P I++S +K+GRHP++EK Sbjct: 532 LVSWIATYIKPVQLNANLIAQLDCLISFTQLAIDNKYVCPQINDSFALDIKNGRHPVIEK 591 Query: 625 TLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684 L P+IAND L D+++ +L ++TGPNM GKS LRQ ALIV++AQMGS+VP Sbjct: 592 QLP--IGVPYIANDVYL----DRDTQQLIMITGPNMSGKSAILRQTALIVLLAQMGSFVP 645 Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744 A +GIVDK+F+RVG++DN++ G STFMVEM ETASILN +++S V+LDEIGRGT+T Sbjct: 646 AESVQMGIVDKIFTRVGASDNISMGESTFMVEMNETASILNNISDRSLVLLDEIGRGTST 705 Query: 745 LDGLSIAWATIEYLHET-NRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 DG+SIAWA E+LHE + + L ATH+HEL ++++SL R N + V + + ++F+ Sbjct: 706 YDGVSIAWAIAEFLHENPAQPKTLFATHYHELNEMTESLPRIQNYNVSVKELKDTVLFIR 765 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESK 863 K++ G + HS+GI V K+AG+P V+ +A ILK EK +H+ + + TK +K Sbjct: 766 KLVKGGSAHSFGIHVAKMAGMPQIVLQKAEKILKKLEK--NHSAEALS------GTKGNK 817 Query: 864 NNLSKN----DKLFVEKIK--CLNLD--EMSPLTALKTLYAVK 898 +++ + D +E+IK LNLD ++P+ AL L +K Sbjct: 818 DDIQLSIFNLDDPLLEEIKEEILNLDINTLTPVEALMKLNEIK 860 >gi|163753136|ref|ZP_02160260.1| DNA mismatch repair protein [Kordia algicida OT-1] gi|161326868|gb|EDP98193.1| DNA mismatch repair protein [Kordia algicida OT-1] Length = 869 Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust. Identities = 300/889 (33%), Positives = 496/889 (55%), Gaps = 35/889 (3%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TP+M+QY IK+ PD+L+ +R+GDFYE F +DA+ A+ LGI LT R G +I Sbjct: 7 KKVTPLMKQYNGIKTKYPDALLLFRVGDFYETFGEDAVKAANILGIVLTHRNNG-GDNIE 65 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 + G P H+ N Y+ KL+K G R+AIC+Q+E P + KK +V+R V LVTPG D Sbjct: 66 LAGFPHHSLNTYLPKLVKAGERVAICDQLEDPKQTKK-----IVKRGVTELVTPGVAFND 120 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK 202 ++L +N+L A+ + I+++D+STG F + + + + + P EI+ ++ Sbjct: 121 EVLQAKTNNFLCAIHYGKKLLGISFLDVSTGEFMTTQGSAEYIDKLLQNFKPSEILIPKQ 180 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT-AAA 261 + E+ F + +V + VF + ++ +++ +++ FG E A+ Sbjct: 181 K--KLEFADTFGSNHHVFYLEDWVF-KADFANEKLITHFDTSSLKGFGIEDLSEGIIASG 237 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 A + Y+ +T+ I R + +++D NLE+ + S + +LL ID + Sbjct: 238 AVLYYLSETRHNKLQHITSIARIAEDAYVWMDRFTVRNLELYASTSFN-AITLLDVIDKT 296 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 I+ GGRL +A PL +S +I R + +NF + + IQ+ ++ D+ R +S++ Sbjct: 297 ISPMGGRLLKRWLALPLKNSQQIKQRHEVVNFLLHQEEELGKIQQHIRHISDIERLISKV 356 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLK--NDLPEELRGAVEKLKKLPQSLEKTLSSML 439 G+ P+++ +++ + + + I + K N+ + + + + + L +++TL+ Sbjct: 357 ATGKISPREVIQLKNSLEAIVPIKQITSKSTNEALKVIGDTIHECELLRSKIKETLN--- 413 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 ++ P G + G LDE R + K + + + E T I +LKI NN Sbjct: 414 -EEAPVNILKGNAIASGYSDKLDELRGIAFSGKDYLDKMLERECEATGIPSLKIASNNVF 472 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IEV ++ + + + + +QT+ N R+ T EL + E +I A + IE Sbjct: 473 GYYIEVRNTHKA------KVPETWTRKQTLVNAERYITEELKEYETKILGAEEKIMQIEQ 526 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F L I + +++ + +I +D A LAK NY P ID+S + +K+GRH Sbjct: 527 ELFADLVVWINQYIKAVQQNANIIGKLDCLCGFATLAKANNYSYPKIDDSFDLEIKNGRH 586 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P++EK L S +IAND L D+N+ ++ ++TGPNM GKS LRQ ALIV++AQM Sbjct: 587 PVIEKQLPIGES--YIANDVYL----DRNTQQIIMITGPNMSGKSAILRQTALIVLLAQM 640 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPA A IG+VDK+F+RVG++DN++ G STFMVEM ETASILN + +S V+LDEIG Sbjct: 641 GSFVPADSARIGLVDKIFTRVGASDNISMGESTFMVEMNETASILNNISERSLVLLDEIG 700 Query: 740 RGTATLDGLSIAWATIEYLHE-TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 RGT+T DG+SIAWA EYLHE +R + L ATH+HEL ++++ R N + V + + Sbjct: 701 RGTSTYDGISIAWAISEYLHEHPSRAKTLFATHYHELNEMTEIFDRIKNYNVSVKELKDN 760 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 ++FL K++ G ++HS+GI V K+AG+P VI +A ILK EK H+ +++ ++ Sbjct: 761 VLFLRKLVKGGSEHSFGIHVAKMAGMPQQVIHKANKILKRLEK--SHSSEELADDLKSVE 818 Query: 859 TKESKNNLSKNDKLF---VEKIKCLNLDEMSPLTALKTLYAVKAWTLEK 904 + + +D L E+I ++D ++P+ AL L +K + K Sbjct: 819 NDMQLSFFNMDDPLLEEIKEEILMTDIDTLTPVEALMKLNEIKRMLVRK 867 >gi|218767269|ref|YP_002341781.1| DNA mismatch repair protein MutS [Neisseria meningitidis Z2491] gi|34222688|sp|Q9JWT7|MUTS_NEIMA RecName: Full=DNA mismatch repair protein mutS gi|93117339|gb|ABE99587.1| MutS [Neisseria meningitidis] gi|93117351|gb|ABE99593.1| MutS [Neisseria meningitidis] gi|121051277|emb|CAM07553.1| DNA mismatch repair protein [Neisseria meningitidis Z2491] gi|319411475|emb|CBY91891.1| DNA mismatch repair protein MutS [Neisseria meningitidis WUE 2594] Length = 864 Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust. Identities = 307/893 (34%), Positives = 476/893 (53%), Gaps = 62/893 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM+QY+ IK+ + D LVFYRMGDFYE+FFDDA+ A++ L ITLT RG+ G+ + M G Sbjct: 7 SPMMQQYLGIKAQHTDKLVFYRMGDFYEMFFDDAVEAAKLLDITLTTRGQVDGEPVKMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ +L+K+G +AICEQ+ + K V R VVR+VTPGTLT+ LL Sbjct: 67 VPFHAAEQYLARLVKLGKSVAICEQV-----GEVGAGKGPVERKVVRIVTPGTLTDSALL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 ++N ++AV+ + +AW + +G FK + D+L ++ R+ EI+ + Sbjct: 122 EDKETNRIVAVSPDKKYIGLAWASLQSGEFKTKLTTVDKLDDELARLQAAEILLPDS--- 178 Query: 206 HAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQ---VEKTAAA 261 K+ + V + N + F E + +Y+ + FG + V AA Sbjct: 179 ----KNAPQLQTASGVTRLNAWQFAADAGEKLLTEYFGCQDLRGFGLDGKEHAVAIGAAG 234 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 A ++YI+ TQ + + E + +D+A R NLEI +TLSG + +L+ T+D Sbjct: 235 ALLNYIRLTQNLMPQHLDGLSLETDSQYIGMDAATRRNLEITQTLSGKKSPTLMSTLDLC 294 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G RL A + PL + I R +++ P+Q LK+ D+ R +R+ Sbjct: 295 ATHMGSRLLALWLHHPLRNRAHIRARQEAVAALESQ---YKPLQCRLKNIADIERIAARI 351 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL-PQSLE--KTLSSM 438 +G P+D+A +RD + I DL +E LK + P++L + L Sbjct: 352 AVGNARPRDLASLRDSLFELAQI-------DLSANGSSLLETLKAVFPENLSTAEQLRQA 404 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + + + +DG + G LDE R +++ + L+ K E T + LK++ N Sbjct: 405 ILPEPSVWLKDGNVINHGFHPELDELRRIQNHGDEFLLDLEAKERERTGLSTLKVEFNRV 464 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 G++IE++ + A D + RQT+ N RF T EL E+++ A AL +E Sbjct: 465 HGFYIELSKTQAEQAPAD------YQRRQTLKNAERFITPELKAFEDKVLTAQEQALALE 518 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F+ + + L A++ A +D+ + LAKE+N+ RP + +++GR Sbjct: 519 KQLFDGVLKNLQTALPQLQKAAKAAAALDVLSTFSALAKERNFVRPEFADYPAIHIENGR 578 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ ++ F AN +L + +L LLTGPNMGGKST++RQ ALIV++A Sbjct: 579 HPVVEQQVRH-----FTANHTNLD-----HKHRLMLLTGPNMGGKSTYMRQVALIVLLAH 628 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 G +VPA A IG +D++F+R+G++D+LAS RSTFMVEM ETA IL+ AT QS V++DE+ Sbjct: 629 TGCFVPADAATIGPIDQIFTRIGASDDLASNRSTFMVEMSETAYILHHATEQSLVLMDEV 688 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGL++A A E+L + N+ L ATH+ ELT L ++ N L + + Sbjct: 689 GRGTSTFDGLALAHAVAEHLLQKNKSFSLFATHYFELTYLPEAHAAAVNMHLSALEQGQD 748 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 I+FLH++ PG A SYGI V KLAGLP + A L E N+ + ++ Sbjct: 749 IVFLHQIQPGPAGKSYGIAVAKLAGLPVRALKSAQKHLNGLENQAAANRPQLDIF----S 804 Query: 859 TKESKNNLSKNDKLFVEK-------------IKCLNLDEMSPLTALKTLYAVK 898 T S+ N FV+K ++ L+ D ++P AL LY +K Sbjct: 805 TMPSEKGDEPNVGNFVDKAEEKHFEGILAAALEKLDPDSLTPREALSELYRLK 857 >gi|256838304|ref|ZP_05543814.1| DNA mismatch repair protein MutS [Parabacteroides sp. D13] gi|256739223|gb|EEU52547.1| DNA mismatch repair protein MutS [Parabacteroides sp. D13] Length = 869 Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust. Identities = 293/892 (32%), Positives = 484/892 (54%), Gaps = 53/892 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M+QY +IK+ +PD+++ +R+GDFYE++ +DA++ + LGI TKR +G+ + M G Sbjct: 7 TPLMKQYFDIKAKHPDAILLFRVGDFYEMYGEDAVIGAEILGIVQTKRANGVGQHVEMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KL++ G R+AIC+Q+E P KK LV+R + LVTPG D +L Sbjct: 67 FPHHALDSYLPKLVRAGKRVAICDQLEDPKLTKK-----LVKRGITELVTPGVSINDNIL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 + ++N+L ++ + I+++DISTG F + + D + + P+E++ + Sbjct: 122 NHKENNFLASIHFAKEVCGISFLDISTGEFMTAEGSIDYIDKLLNNFSPKEVL-----IE 176 Query: 206 HAEYKSLFETLGNVAVAQPNVF--------FDHSISESRIADYYNITTVDTFG-SFSQVE 256 K E G P F F S +E R+ ++ + FG ++ Sbjct: 177 RGNKKRFEEAFG------PRFFIFELDDWIFTTSAAEDRLLKHFETKNLKGFGVQHLKLG 230 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 A+ A + Y+ +TQ + I R + + +D +LE++ T++ SLL Sbjct: 231 IIASGAILYYLDQTQHTHISHITALSRIEEDRYVRLDKFTVRSLELVGTMN-DEGTSLLD 289 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 ID +I+ G R+ I PL D I R + +++F + P + L+ D+ R Sbjct: 290 VIDKTISPMGSRMLRRWILFPLKDVKPIQERQEVVDYFFREPETKELLDTQLEQIGDLER 349 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 +S++ +GR P+++ ++ +R+ I + + P R E+L + + Sbjct: 350 IISKVAVGRVSPREVVQLKVALRAIEPIKEACMASGEPSLCRIG-EQLNACAL-IRDRIE 407 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 +++D P+ GG + G + LD+ R++ K + +Q + E T I +LKI N Sbjct: 408 KEINNDPPSLVNKGGIIAKGVNEELDDLRAIAYSGKDYLLKVQQREIELTGIPSLKIAFN 467 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 N GY+IEV ++ + + +I +QT+ N R+ T EL + E +I A L Sbjct: 468 NVFGYYIEVRNTHKDKVPAN------WIRKQTLVNAERYITEELKEYEEKILGAEEKILA 521 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E F L A+ E + + +I ID ++ A A+ Y RP++ +S +K Sbjct: 522 LETRLFNELVLALTEYIPPIQMNANLIGRIDCLLSFAKAAEANKYIRPVVSDSDKIDIKG 581 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP++EK L +P+IAND L D ++ ++TGPNM GKS LRQ ALI +M Sbjct: 582 GRHPVIEKQLPL--GEPYIANDVYL----DDEKQQIIIITGPNMAGKSALLRQTALITLM 635 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+G +VPA AHIGIVDK+F+RVG++DN++ G STFMVEM E + ILN T++S V+ D Sbjct: 636 AQIGCFVPAESAHIGIVDKIFTRVGASDNISVGESTFMVEMNEASDILNNMTSRSLVLFD 695 Query: 737 EIGRGTATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 E+GRGT+T DG+SIAWA +EY+HE + + L ATH+HEL ++ ++ KR N + V + Sbjct: 696 ELGRGTSTYDGISIAWAIVEYIHEHPNAKAKTLFATHYHELNEMERAFKRIKNYNVSVKE 755 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 +IFL K+IPG ++HS+GI V K+AG+P +++ R+ +ILK E N+++ Sbjct: 756 VGNKVIFLRKLIPGGSEHSFGIHVAKMAGMPKSIVKRSNEILKQLES---ENRQEGITGK 812 Query: 855 P--EIQTKESKNNLS---KNDKLFVE---KIKCLNLDEMSPLTALKTLYAVK 898 P I + LS +D + + +IK L+++ ++PL AL L +K Sbjct: 813 PVKAIASAAEGYQLSFFQLDDPVLSQVRDEIKNLDVNNLTPLEALNKLSEIK 864 >gi|157150901|ref|YP_001451304.1| DNA mismatch repair protein MutS [Streptococcus gordonii str. Challis substr. CH1] gi|189083199|sp|A8AZU4|MUTS_STRGC RecName: Full=DNA mismatch repair protein mutS gi|157075695|gb|ABV10378.1| DNA mismatch repair protein MutS [Streptococcus gordonii str. Challis substr. CH1] Length = 847 Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust. Identities = 303/884 (34%), Positives = 477/884 (53%), Gaps = 57/884 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK D+ + +RMGDFYELF++DA+ A++ L I LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYQDAFLLFRMGDFYELFYEDAVNAAQILEIALTSRNKNSENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI+ G+++AI EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPYHSAQQYIDVLIESGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSSK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSEKEL 204 ++N+L+A+ R + +A++D++TG F++ S ++ D+ +I + RE++ Sbjct: 121 PVGENNFLVALDRQEQAYGLAYMDLATGEFQVTSLADFDQACGEIRNLRAREVVVG---- 176 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAA 263 L E + Q N+ S E + D V G S +EK A Sbjct: 177 -----YCLSEDEQQILSKQMNLLL--SEVEEAMED------VQLLGDELSSLEKQTAGKL 223 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 ++Y+ +TQM + +I+ L +D A +++L++ +G + SL +D + Sbjct: 224 LAYVFQTQMRELSHLKKVHHYEIKDFLQMDYATKTSLDLTENARTGKKHGSLFWLMDETK 283 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGRL I PL D +I R D + F+ + + LK D+ R +SR+ Sbjct: 284 TAMGGRLLRSWIQHPLIDKGRIIKRQDVVQVFLDYFFERSDLADSLKGVYDIERLVSRVS 343 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 G+ PKD+ + + I ++ + P L V +L +P+ LE +SS + D Sbjct: 344 FGKTNPKDLLQLASTLSHVPQIRSILETIESPA-LESLVARLDAIPE-LENLISSAIDPD 401 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P +G +R G D +LD+ R + + IA ++ K E + I NLKI +N GY+ Sbjct: 402 APQVITEGNIIRTGFDETLDQYRLVMREGTSWIADIEAKEREASGITNLKIDYNKKDGYY 461 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 VT+S + F + T+ N RF T EL +E + A + +E E F Sbjct: 462 FHVTNSQLGNVPS------HFFRKATLKNSERFGTEELARIEGEMLEAREKSANLEYEIF 515 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 + + + + L +Q +A +D+ + A++A+ Q+ RP +S + +K GRH +V Sbjct: 516 MRIREEVGKYIQRLQALAQTLATVDVLQSFAVVAESQHLVRPSFTSSRSLQIKKGRHAVV 575 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 EK + QS +I N +L D + L+TGPNM GKST++RQ A+IVIMAQMGSY Sbjct: 576 EKVMGAQS---YIPNSIELDQETD-----IQLITGPNMSGKSTYMRQLAMIVIMAQMGSY 627 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA A + I D +F+R+G+AD+L SG+STFMVEM+E + QA+ +S ++ DE+GRGT Sbjct: 628 VPAEVASLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANRAIRQASERSLILFDELGRGT 687 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFL 802 AT DG+++A A IEY+H+ + + L ATH+HELTDLS SL R N + + + + FL Sbjct: 688 ATYDGMALAQAIIEYIHDRTKAKTLFATHYHELTDLSSSLTRLENVHVATLEKDGQVTFL 747 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKES 862 HK+ G AD SYGI V K+AGLP ++ RA IL E NQ+ P +T Sbjct: 748 HKIEAGPADKSYGIHVAKIAGLPTDLLRRADAILTDLE-----NQEKREASLPASRTDSQ 802 Query: 863 KNNLSKNDKLFVE--------KIKCLNLDEMSPLTALKTLYAVK 898 K +S+ LFVE +++ L++ M+PL + + +K Sbjct: 803 K--VSEQMSLFVEETENPVLTELRDLDIYNMTPLEVMAAVAELK 844 >gi|172037067|ref|YP_001803568.1| DNA mismatch repair protein MutS [Cyanothece sp. ATCC 51142] gi|171698521|gb|ACB51502.1| DNA mismatch repair protein [Cyanothece sp. ATCC 51142] Length = 884 Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust. Identities = 299/837 (35%), Positives = 464/837 (55%), Gaps = 36/837 (4%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGK 79 +K TPM + Y+++K P++L+ YR+GDF+E FF DA+ S+ L + LT + GK +G+ Sbjct: 28 VKKLTPMYQHYVKVKQQYPNALLLYRVGDFFECFFQDAVTISQELELMLTSKEGGKEIGR 87 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 + M GVP H + Y + L++ G+ +AIC+Q+E +A +G +V R + +L+TPGTL Sbjct: 88 -VAMTGVPHHALDRYSRLLVEKGYAVAICDQVEDSAQAAAQGR--MVERQITKLLTPGTL 144 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREII 198 T++ +LS +NYL AV W +A+ DISTG F + L +++R+ P EI+ Sbjct: 145 TDEGMLSAKQNNYLAAVVIAGEHWGLAYADISTGEFFTTQSKELTNLNLELLRLQPAEIL 204 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVF---------FDHSISESRIADYYNITTVDTF 249 E +A P+ F F + ++S++ + + +++ F Sbjct: 205 IPTNAPDINSLLRPGEKSQYLADVLPDCFCYSLRSQTPFTLNEAKSKLLINFRVRSLEGF 264 Query: 250 GS-FSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-S 307 G + AA + YI+ TQ ++ + + L +D R NLEI +T+ Sbjct: 265 GCEHLPLAIRAAGGLLEYIEDTQKAHQVPLQLLRTYNQVDFLILDYQTRRNLEITQTVRD 324 Query: 308 GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI 367 GS SLL +D + T GGR + PL I R ++I I NP L I+++ Sbjct: 325 GSFHGSLLWALDRTCTAMGGRALRRWLLEPLISIKGIIARQNTIQELIDNPTLRQEIRQL 384 Query: 368 LKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL 427 L+S D+ R R+ G +D+ + + + + + L E L ++ L+ + Sbjct: 385 LRSIYDLERISGRVGAGTANARDLLSLAESL---VKLKELAELAQQGESLY--LKALQNI 439 Query: 428 PQSLEKTLSSMLSDDL----PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 P LEK L + D L P +DGG +RDG +A LD R + ++ +A+L++ Sbjct: 440 PPDLEK-LGHYVIDHLVESPPLHLKDGGVIRDGINADLDTMRKRLEDDRQWLANLEISER 498 Query: 484 EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDL 543 E T + NLK+ +N GY++ + S A ++ D ++ +QT++N R+ T EL + Sbjct: 499 ERTGVSNLKVGYNKTFGYYLSMPRSKAE------QAPDNYVRKQTLTNEERYITPELKER 552 Query: 544 ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCR 603 E RI A + +E E F L + E+++ + ++ +A ID+ A +A Q YCR Sbjct: 553 ETRILTAQDDLNKLEYEIFVELRLKVAEKAQEIRKIAKAVAAIDVLSGFAEIAVFQGYCR 612 Query: 604 PIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 P I +S + DGRHP+VE++L F+ N ++ + S L +LTGPN GK Sbjct: 613 PEILDSRLIEIADGRHPVVEQSL---GFGLFVPNSTNMGRNEGETSPDLIILTGPNASGK 669 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 S +LRQ LI +MAQ GS+VPA+ A +GI D++F+RVG+ D+LA+G+STFMVEM ETA+I Sbjct: 670 SCYLRQVGLIQLMAQTGSFVPATEAKLGISDRIFTRVGAVDDLATGQSTFMVEMNETANI 729 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLK 783 LN AT +S ++LDEIGRGTAT DGLSIAWA EYL + R + ATH+HEL +L+ L Sbjct: 730 LNHATEKSLILLDEIGRGTATFDGLSIAWAVAEYLATEVQGRTIFATHYHELNELASILF 789 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 N + V + I+FLH+V PG AD SYGI+ G+LAGLP +VISRA ++ E Sbjct: 790 NVANYQVTVQELPHEIVFLHQVRPGGADKSYGIEAGRLAGLPASVISRAKQVMNQIE 846 >gi|35367182|gb|AAN85562.1| MutS [Enterococcus faecium] Length = 881 Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust. Identities = 303/908 (33%), Positives = 493/908 (54%), Gaps = 70/908 (7%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM QY+ IK+ D+ +FYR+GDFYELF++DA+ AS+ L +TLT R ++ + IPMC Sbjct: 7 NTPMMEQYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELTLTSRNRNAEEPIPMC 66 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H A YI LI+ G+++AICEQ+E P + K +V+R V++LVTPGT+ + + Sbjct: 67 GVPHHAAQGYIDALIEKGYKVAICEQVEDP-----KTTKGMVKREVIQLVTPGTVMDSKG 121 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 LS D+N+L AV E+ A+ D+STG K + + + ++++ + +E++ E Sbjct: 122 LSAKDNNFLTAVVSQGNEFGFAYADLSTGELKTARLHDEEAVLNEASALQTKELVLG-SE 180 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 ++ + L LG V Q + + E+ + VD +EK A Sbjct: 181 ITDTLREQLSGRLGLVFSQQ------NEMEENAEFSFLTSELVDP------LEKEATGKL 228 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 ++Y+ TQ + I L +D ++ NLE+ +++ +G + +LL +D + Sbjct: 229 LTYLSVTQKRSLAHIQKAVEYQPDHFLKMDYYSKFNLELSQSIRTGKKHGTLLWLLDETK 288 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGRL + + PL + +I R + + + + +Q L D+ R R+ Sbjct: 289 TAMGGRLLKQWLDRPLIQAKQIKARQEMVASLLDSYFERIDLQSALTKVYDLERLAGRVA 348 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE---KTLSSML 439 G +D+ ++ + I L D +G + L Q ++ + + + Sbjct: 349 FGNVNGRDLIQLKTSLEQVPMIRGLIEGID-----QGQWQSLLSEMQPMDHLVQLIDQAI 403 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 DD P +G ++DG + LD RS K+ +A L+ K +ET IKNLKI N Sbjct: 404 QDDPPLQITEGNIIKDGFNEQLDMYRSAMRNGKKWLAELEAKERQETGIKNLKIGFNRVF 463 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IE+T A++ +LE +R +QT++N RF T EL +LE +I A ++ +E Sbjct: 464 GYYIEITK--ANLGNAELEKYER---KQTLANAERFITPELKELETQILEAEEKSVDLEY 518 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP-IIDNSTNFIVKDGR 618 + F + + + + L ++ I+ +D+ + A +++ Y RP ++ + ++KDGR Sbjct: 519 QLFLAVREEVKKAIQPLQVLAKAISAVDVLQSFATISERYQYVRPELVSDKHQLLIKDGR 578 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VEK L Q +I N +++ + L+TGPNM GKST++RQ AL V++AQ Sbjct: 579 HPVVEKVLGHQE---YIPNSVEMA-----EDEMILLITGPNMSGKSTYMRQLALTVLLAQ 630 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 MG +VPA A + I D++F+R+G++D+L +G+STFMVEM+E L AT S ++ DE+ Sbjct: 631 MGCFVPAKQAVLPIFDRIFTRIGASDDLIAGQSTFMVEMMEANQALRYATPNSLILFDEL 690 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGTAT DG+++A A IEY+H + + L +TH+HELT L K L + N + + + Sbjct: 691 GRGTATYDGMALAQAIIEYIHRHVQAKTLFSTHYHELTVLEKELPQLKNVHVGAVEKDGE 750 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL--YHHN---------- 846 ++FLHK++ G AD SYGI V K+AGLP+ ++ RA DIL T E HH Sbjct: 751 VVFLHKMMDGPADKSYGIHVAKIAGLPSNLLERAADILHTLENGDNGHHTVPAEVEEKTK 810 Query: 847 -QKDMRLYYP-------EIQTKESKNN--------LSKNDKLFVEKIKCLNLDEMSPLTA 890 K ++ P IQ + + N LS+N+ +E +K +NL EM+P+ A Sbjct: 811 TAKQEQIKPPAEKVNQDHIQDRVKEENQQLSLFSELSENETEVIESLKQINLLEMTPMDA 870 Query: 891 LKTLYAVK 898 L TLY ++ Sbjct: 871 LNTLYELQ 878 >gi|187924497|ref|YP_001896139.1| DNA mismatch repair protein MutS [Burkholderia phytofirmans PsJN] gi|238689578|sp|B2SXQ9|MUTS_BURPP RecName: Full=DNA mismatch repair protein mutS gi|187715691|gb|ACD16915.1| DNA mismatch repair protein MutS [Burkholderia phytofirmans PsJN] Length = 894 Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust. Identities = 311/919 (33%), Positives = 470/919 (51%), Gaps = 91/919 (9%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 ++ TPMM+QY+ IK+ +P +LVFYRMGDFYELFF+DA A+R L +TLT+RG G Sbjct: 10 DVAQHTPMMQQYLRIKADHPGTLVFYRMGDFYELFFEDAEKAARLLDLTLTQRGASAGNP 69 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 I M GVP H Y+ KL+K+G +AICEQI P +K V R VVR+VTPGTLT Sbjct: 70 IKMAGVPHHAVEQYLAKLVKLGESVAICEQIGDPAT-----SKGPVERKVVRVVTPGTLT 124 Query: 141 EDQLLSPTDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDP 194 + LLS YL+A+ + T +AW+++++G +++ D++ + + RI P Sbjct: 125 DAALLSDKSDVYLLAMCVAHNRRGVATSVGLAWLNLASGALRLAEVAPDQVAAALERIRP 184 Query: 195 REIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS- 253 EI+ ++ A + V P FD + R+ D + +D FG+ S Sbjct: 185 AEILVADTPSDSASWTPPVNAGALTRV--PVWHFDVTSGTQRLCDQLEVAGLDGFGAHSL 242 Query: 254 -----QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG 308 AA + ++ + V + Y E E I +D A R NLE+ TL G Sbjct: 243 TCACGAAGALLLYAAATQGQQLRHVRSLKVEY-ESEYIG----LDPATRRNLELTETLRG 297 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP--ILINPIQK 366 + +L +D T G RL + P +S R +I + P I+ ++ Sbjct: 298 TESPTLCSLLDTCCTTMGSRLLRHWLHHPPRESAVAQARQQAIGALLDAPPGASIDSLRG 357 Query: 367 ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAV----- 421 L+ D+ R RL + P+D++ +RD F+ LPE LR V Sbjct: 358 ALRQISDIERITGRLALLSARPRDLSSLRD----------TFIA--LPE-LRTQVAAVAP 404 Query: 422 --EKLKKL------PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKR 473 + L ++ PQ+ + L ++ + RDGG + G DA LDE R + + + Sbjct: 405 NADSLARIDASLEPPQACVELLKRAVAQEPSAMVRDGGVIARGYDAELDELRDISENCGQ 464 Query: 474 IIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLT 533 + L+ + T I NL++++N G++IEVT + D + RQT+ N Sbjct: 465 FLIDLETRERARTGIGNLRVEYNKVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAE 518 Query: 534 RFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALA 593 R+ T EL E++ +A AL E ++ L A++ + +A +D+ A Sbjct: 519 RYITPELKTFEDKALSAQERALARERSLYDALLQALLPFIPDCQRVASALAELDLLAAFG 578 Query: 594 ILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLW 653 A+ ++ P + ++ GRHP+VE ++Q FIANDC L+ KL Sbjct: 579 ERARALDWVAPTFSANAGIEIEQGRHPVVEAQVEQ-----FIANDCSLT-----PERKLL 628 Query: 654 LLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTF 713 L+TGPNMGGKSTF+RQ ALI ++A +GSYVPA A G +D++F+R+G+AD+LA GRSTF Sbjct: 629 LITGPNMGGKSTFMRQTALIALLAYVGSYVPARRAAFGPIDRIFTRIGAADDLAGGRSTF 688 Query: 714 MVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFH 773 MVEM E A+ILN AT QS V++DEIGRGT+T DGL++AWA +L N C L ATH+ Sbjct: 689 MVEMTEAAAILNDATPQSLVLMDEIGRGTSTFDGLALAWAIARHLLAHNGCHTLFATHYF 748 Query: 774 ELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAY 833 ELT L + N L + GI+FLH V G A+ SYG+QV +LAG+PN VI A Sbjct: 749 ELTQLPAEFPQAANVHLSAVEHGHGIVFLHAVSEGPANQSYGLQVAQLAGVPNAVIRAAR 808 Query: 834 DILKTFEKLYHHNQKDMRLYYPEI-----------------QTKESKNNLSKNDKLFVEK 876 + L H Q+ P++ + +++ + + VE+ Sbjct: 809 ------KHLAHLEQQSAAQPAPQLDLFATPMPMLLEDADDERDAKAEPAVPPAMQELVER 862 Query: 877 IKCLNLDEMSPLTALKTLY 895 ++ ++ +++ P AL LY Sbjct: 863 LRGIDPNDLRPREALDLLY 881 >gi|83748240|ref|ZP_00945266.1| MutS [Ralstonia solanacearum UW551] gi|207743508|ref|YP_002259900.1| dna mismatch repair protein muts [Ralstonia solanacearum IPO1609] gi|83725081|gb|EAP72233.1| MutS [Ralstonia solanacearum UW551] gi|206594906|emb|CAQ61833.1| dna mismatch repair protein muts [Ralstonia solanacearum IPO1609] Length = 885 Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust. Identities = 297/829 (35%), Positives = 443/829 (53%), Gaps = 50/829 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+++KS +P +LVFYRMGDFYELFF+DA A+R L ITLT RG G+ I M G Sbjct: 22 TPMMQQYLKLKSAHPHTLVFYRMGDFYELFFEDAEKAARLLDITLTSRGSTNGQPIRMAG 81 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H Y+ KL+K+G AICEQI P K V R VVR+VTPGTLT+ LL Sbjct: 82 VPFHAVEQYLAKLVKLGESAAICEQIGDPAT-----TKGPVERKVVRVVTPGTLTDAALL 136 Query: 146 SPTDSNYLMAVARIRTEWA------IAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 S +N+L+A+A+I + +AW+++ G ++ D+L ++ RI P E++ Sbjct: 137 SDKVNNHLLAIAQIPGKRGAAPLVGLAWLNLVGGELRLMECGADQLDRELERIRPAEVLS 196 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 + L+ Y L P+ FD R+ + + ++ FG+ + A Sbjct: 197 DDGTLNAIAYDVARTRL-------PDWHFDVEAGARRLREQLGVASLVAFGAETLTAALA 249 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTL-----FI--DSAARSNLEILRTLSGSREQ 312 AA A+ T G R I T+ FI D+A R NLE+ TL G Sbjct: 250 AAGALLNYAAA------TQGQSLRHVIGLTVEHESEFIGLDTATRRNLELTETLRGQESP 303 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 +L +D T G RL + PL D R +I + ++ L++ Sbjct: 304 TLFSLLDTCSTSMGSRLLRHWLHHPLRDRAVPQARQQAIEVLLAGDW--QSLRGTLRTLS 361 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE 432 DV R RL + P+D++ +RD + + + ++D L G + +P+ Sbjct: 362 DVERITGRLALLSARPRDLSSLRDTLARLPEVRDQLPQSD-AAPLLGDLHAALAIPEDAH 420 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 L + + RDGG + G DA LDE R + + + + L+ + E T I NL+ Sbjct: 421 ALLQHAVMAEPAAMVRDGGVIARGYDADLDELRDISENCGQFLVDLEARERERTGIANLR 480 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 +++N G++IEVT+ A+ + D + RQT+ N R+ T EL E++ +A + Sbjct: 481 VEYNRVHGFYIEVTNGQAAKVPDD------YRRRQTLKNAERYITPELKTFEDKALSAQD 534 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 AL E +E L ++ + + +A D+ LA A ++ P + ++ Sbjct: 535 RALSREKSLYEDLLQKLLPHLPAFKRIAAALAQADVLATLAERAHALSWSCPALTDAPGI 594 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 + RHP+VE+ ++Q F+ANDC L + + KL L+TGPNMGGKSTF+RQ AL Sbjct: 595 ELIRARHPVVEQQVEQ-----FVANDCVL-----QETRKLLLITGPNMGGKSTFMRQTAL 644 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 +V++A +G++VPA A IG +D++F+R+G+AD+LA GRSTFMVEM E A+IL++AT S Sbjct: 645 VVLLAYVGAFVPADAATIGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILHRATPNSL 704 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 V++DEIGRGT+T DGL++AWA +L NR L ATH+ ELT L + + N L Sbjct: 705 VLMDEIGRGTSTFDGLALAWAIARHLLSHNRSHTLFATHYFELTQLPQEFAQASNVHLSA 764 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 + +GI+FLH V G A SYG+QV +LAG+P VI A L E+ Sbjct: 765 VEHGDGIVFLHAVQEGPASQSYGLQVAQLAGVPQPVIRAARKRLAWLEQ 813 >gi|116690109|ref|YP_835732.1| DNA mismatch repair protein [Burkholderia cenocepacia HI2424] gi|166232117|sp|A0K8L2|MUTS_BURCH RecName: Full=DNA mismatch repair protein mutS gi|116648198|gb|ABK08839.1| DNA mismatch repair protein MutS [Burkholderia cenocepacia HI2424] Length = 885 Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust. Identities = 309/903 (34%), Positives = 462/903 (51%), Gaps = 60/903 (6%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E TPMM+QY+ IK+ +PD+LVFYRMGDFYELFF+DA A+R L +TLT+RG G Sbjct: 7 EAFAGHTPMMQQYLRIKADHPDTLVFYRMGDFYELFFEDAEKAARLLDLTLTQRGASAGT 66 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 I M GVP H Y+ KL+K+G +AICEQI P +K V R VVR+VTPGTL Sbjct: 67 PIKMAGVPHHAVEQYLAKLVKMGESVAICEQIGDPAT-----SKGPVERKVVRVVTPGTL 121 Query: 140 TEDQLLSPTDSNYLMAVAR------IRTEWAIAWIDISTGIFKISTSNHDRLISDIMRID 193 T+ LLS + YL+A+ + +AW+++++G +++ D+L + + RI Sbjct: 122 TDAALLSDKNDVYLLAMCTGHNKRGVAVNIGLAWLNLASGALRLAEIEPDQLAAALERIR 181 Query: 194 PREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS 253 P EI+ + + P FD + R+ D ++ ++D FG+ S Sbjct: 182 PAEILTPDGA------TDAIPAGAGASKRVPAWHFDIASGTQRLCDQLDVASLDGFGAHS 235 Query: 254 QVEKTAAAAAISYIKK-TQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 AA A+ TQ + + E+ + +D A R NLE+ TL G+ Sbjct: 236 LTSACGAAGALLLYAAATQGQQLRHVRSLKVENETEYIGLDPATRRNLELTETLRGTESP 295 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPI--LINPIQKILKS 370 +L +D T G RL + P S +R +I + P ++ ++ L+ Sbjct: 296 TLYSLLDTCCTTMGSRLLRHWLHHPPRASVAAQSRQQAIGALLDAPANASLDALRSALRQ 355 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGI--------RSGINILNLFLKNDLPEELRGAVE 422 DV R RL + P+D++ +RD R G + N + V+ Sbjct: 356 IADVERITGRLALLSARPRDLSSLRDTFAALPALRERIGAIVAN--------ADALARVD 407 Query: 423 KLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 P L+S ++ + RDGG + G DA LDE R + + + + L+ + Sbjct: 408 AALAPPAECLDLLTSAIAPEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLEARE 467 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 T I NL++++N G++IEVT + D + RQT+ N R+ T EL Sbjct: 468 RARTGIANLRVEYNKVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKT 521 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E++ +A AL E ++ + A++ + +A +D+ A A A+ ++ Sbjct: 522 FEDKALSAQERALARERALYDSVLQALLPFIPECQRVASALAELDLLAAFAERARALDWV 581 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + ++ GRHP+VE ++Q FIANDC KL L+TGPNMGG Sbjct: 582 APTFTDEIGIEIEQGRHPVVEAQVEQ-----FIANDCRFG-----TERKLLLITGPNMGG 631 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KSTF+RQ ALI +MA +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+ Sbjct: 632 KSTFMRQTALIALMAYVGSYVPAKSACFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAA 691 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 ILN AT QS V++DEIGRGT+T DGL++AWA +L N C L ATH+ ELT L Sbjct: 692 ILNDATPQSLVLMDEIGRGTSTFDGLALAWAIARHLLAHNACYTLFATHYFELTQLPAEF 751 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + GI+FLH V G A+ SYG+QV +LAG+P VI A L E+ Sbjct: 752 PQAANVHLSAVEHGHGIVFLHAVNEGPANQSYGLQVAQLAGVPAPVIRAARKHLAYLEQQ 811 Query: 843 ---YHHNQKDMRLYYP----EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 H Q D+ P +++ ++ L +EK++ ++ D++ P AL LY Sbjct: 812 SASQHTPQLDLFSAPPAAVDDLECADAP-ALPDTPHPALEKLRDIDPDDLKPREALDLLY 870 Query: 896 AVK 898 ++ Sbjct: 871 ELR 873 >gi|81427976|ref|YP_394975.1| DNA mismatch repair protein [Lactobacillus sakei subsp. sakei 23K] gi|90109847|sp|Q38YR4|MUTS_LACSS RecName: Full=DNA mismatch repair protein mutS gi|78609617|emb|CAI54663.1| DNA mismatch repair protein MutS [Lactobacillus sakei subsp. sakei 23K] Length = 867 Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust. Identities = 307/896 (34%), Positives = 484/896 (54%), Gaps = 71/896 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY ++K PD+ +FYR+GDFYELF DDA+ AS+ L +TLT R K+ IPMCG Sbjct: 8 TPMMAQYQKVKDQYPDAFLFYRLGDFYELFNDDAVKASQLLELTLTARNKNAADPIPMCG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A +YI L+ G+++AICEQ+E P AK +V+R VV+LVTPGT+ +++ Sbjct: 68 VPHHAAQNYIDILVDQGYKVAICEQMEDPKTAK-----GMVKREVVQLVTPGTVMDEKAG 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204 +NYL AV ++ A+ D+STG K+S S+ D L+++++ + +E++ + Sbjct: 123 HAKQNNYLTAVVAQGDQFGFAYTDLSTGEMKVSQISSLDVLLNEMLSLQTKEVV-----V 177 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 +H + + A Q + + + AD ++ V + + A A I Sbjct: 178 NHDVPSEVVQ-----AFVQQQILVSY---QDEGADTAEVSFVS-----QNISQPLALAVI 224 Query: 265 S----YIKKTQMVNKPTIGYPERE---DIQSTLFIDSAARSNLEILRTL-SGSREQSLLK 316 Y+ TQ K +G+ +R + L +D +A+ NLE+ +L +G + +LL Sbjct: 225 KQLVVYLATTQ---KRHLGHLQRAQAYEPSQYLKLDHSAKMNLELTASLRTGHKSGTLLW 281 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D + T GGRL + + PL D +I R + + F+Q+ +Q+ L D+ R Sbjct: 282 LLDETKTAMGGRLLKQWLERPLLDLNQIKNRQNQVASFLQHYFERTNLQEALTKVYDLER 341 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 R+ G +D+ ++ + I ++ + + A+ +L + + + Sbjct: 342 LAGRVAFGSVNGRDLIQLKTSLEQIPKIKDVLTGINETQAFDQALTRLDPV-DDVRTLIE 400 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + ++ D P DGG ++DG D LD+ R+ K+ +A L+ + E T I NLKI N Sbjct: 401 TAINPDSPISVTDGGIIQDGYDEQLDQYRNAMSNGKQWLAQLEAQEREATGIHNLKIGFN 460 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+IEVT ++ S L + R+ +QT++N RF T EL + E I A + Sbjct: 461 RVFGYYIEVTRANLSSL-----PEGRYERKQTLTNAERFITPELKEKEQLILEAEERSTA 515 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI-VK 615 +E E F + + Q E L ++ +A +D+ + A++++ +Y +P + + I + Sbjct: 516 LEYELFTQVREQVKLQIERLQTLAKGVAALDVLQSFAVVSESYHYVQPTLRTDSREIDLV 575 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 DGRHP+VEK L +Q +I N + D + L+TGPNM GKST++RQ AL VI Sbjct: 576 DGRHPVVEKVLGRQK---YIPNAVQMGKETD-----MLLITGPNMSGKSTYMRQLALTVI 627 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQMG +VPA A++ + D++F+R+G+AD+L SG+STFMVEM+E + AT S ++ Sbjct: 628 MAQMGCFVPAKSANLPVFDQIFTRIGAADDLISGQSTFMVEMMEANRAIMSATANSLILF 687 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGTAT DG+++A A IEY+H+ + L +TH+HELT L+ +L N + + Sbjct: 688 DEIGRGTATYDGMALAQAIIEYIHDHVHAKTLFSTHYHELTALADTLTALRNVHVGAVEE 747 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--------------- 840 N ++FLHK++ G AD SYGI V KLAG+P T++ RA IL E Sbjct: 748 NGELVFLHKMLAGPADKSYGIHVAKLAGMPETLLQRADVILGQLEDKPKAPVQPATVAPA 807 Query: 841 -KLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 ++ M L+ PE+ K K DK+ V IK +L +PL AL LY Sbjct: 808 QPAAAAVEEQMALFEPEVAAPVDK----KTDKV-VAAIKNFDLMSATPLEALNQLY 858 >gi|332092095|gb|EGI97173.1| DNA mismatch repair protein MutS [Shigella boydii 3594-74] Length = 841 Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust. Identities = 310/892 (34%), Positives = 480/892 (53%), Gaps = 73/892 (8%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY+ +K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IPM G+P Sbjct: 1 MMQQYLRLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPMAGIP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT++++ LL Sbjct: 61 YHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTISDEALLQE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKELSH 206 N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++++E Sbjct: 116 RQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELLYAE---DF 172 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT-----AAA 261 AE SL E + ++ I +R T D G F VE AA Sbjct: 173 AEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENAPRGLCAAG 226 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 + Y K TQ P I E Q ++ +D+A R NLEI + L+G E +L +D + Sbjct: 227 CLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENTLASVLDCT 286 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +T G R+ + P+ D+ + R +I +Q+ +Q +L+ D+ R L+RL Sbjct: 287 VTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAGLQPVLRQVGDLERILARL 343 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP-----------QS 430 + P+D+A +R + LPE LR +E + P Sbjct: 344 ALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQALREKMGEFAE 390 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L L + D P RDGG + G + LDE R+L D + + L+++ E T + Sbjct: 391 LRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERERTGLDT 450 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + Sbjct: 451 LKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKEYEDKVLTS 504 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY P + Sbjct: 505 KGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFIDKP 564 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNMGGKST++RQ Sbjct: 565 GIRITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQT 615 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT Sbjct: 616 ALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEY 675 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L Sbjct: 676 SLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEDVANVHL 735 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH---NQ 847 + + I F+H V G A SYG+ V LAG+P VI RA L+ E + + Q Sbjct: 736 DALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESISPNAAATQ 795 Query: 848 KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 D T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 796 VD--------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 839 >gi|297208058|ref|ZP_06924489.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus ATCC 51811] gi|296887301|gb|EFH26203.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus ATCC 51811] Length = 872 Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust. Identities = 318/924 (34%), Positives = 489/924 (52%), Gaps = 111/924 (12%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPMM+QY++IKS D L+F+R+GDFYE+F++DA ASR L ITLTKR I Sbjct: 1 MSNVTPMMQQYLKIKSEYQDCLLFFRLGDFYEMFYEDAKEASRVLEITLTKRDAKKENPI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A+ YI L+ G+++AICEQ+E P + K +VRR VVR+VTPGT+ E Sbjct: 61 PMCGVPYHSADSYIDTLVNNGYKVAICEQMEDP-----KQTKGMVRREVVRIVTPGTVME 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD-RLISDIMRIDPREIIFS 200 + +NY+++ + E A+++ D+STG K++ N + L+++I I+P E++ + Sbjct: 116 QGGVDDKQNNYILSFVMNQPEIALSYCDVSTGELKVTHFNDEATLLNEITTINPNEVVIN 175 Query: 201 E-------------------KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYY 241 + +E +E S+ +T + + D+ I ++ D Sbjct: 176 DNISDNLKRQINMVTETITVRETLSSEIYSVNQTEHKLMYQATQLLLDY-IHHTQKRD-- 232 Query: 242 NITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLE 301 S +E AAI Y+K +D A+ NLE Sbjct: 233 ----------LSHIEDVVQYAAIDYMK-----------------------MDFYAKRNLE 259 Query: 302 ILRTLS-GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL 360 + ++ S++ +LL +D + T G R + I PL +I RLD ++ F + I Sbjct: 260 LTESIRLKSKKGTLLWLMDETKTPMGARRLKQWIDRPLISKEQIEARLDIVDEFSAHFIE 319 Query: 361 INPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGA 420 + ++ L D+ R + R+ G +D+ ++ I NI L N + + Sbjct: 320 RDTLRTYLNQVYDIERLVGRVSYGNVNARDLIQLKHSISEIPNIKALL--NSMNQNTLVQ 377 Query: 421 VEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 V +L L L+ L L ++ P +DGG + G + LDE K +A LQ Sbjct: 378 VNQLVPLDDLLD-ILEQSLVEEPPISVKDGGLFKVGFNTQLDEYLEASKNGKTWLAELQA 436 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 K + T IK+LKI N GYFIE+T ++ L+ S+ ++ +QT+SN RF T EL Sbjct: 437 KERQRTGIKSLKISFNKVFGYFIEITRAN---LQNFEPSEFGYMRKQTLSNAERFITDEL 493 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 + E+ I A + A+ +E + F L + + +E L +++I+ +D + A +A++ N Sbjct: 494 KEKEDIILGAEDKAIELEYQLFVQLREEVKKYTERLQQQAKIISELDCLQSFAEIAQKYN 553 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 Y RP + + + RHP+VE+ + ++ N+C L N ++L+TGPNM Sbjct: 554 YTRPSFSENKTLELVESRHPVVERVM---DYNDYVPNNCRLD-----NETFIYLITGPNM 605 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GKST++RQ A+I IMAQMG+YVP A + I D++F+R+G+AD+L SG+STFMVEM+E Sbjct: 606 SGKSTYMRQVAIISIMAQMGAYVPCKEAVLPIFDQIFTRIGAADDLVSGKSTFMVEMLEA 665 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 L AT S +I DEIGRGT+T DGL++A A IEY+ ET+ + L +TH+HELT L + Sbjct: 666 QKALTYATEDSLIIFDEIGRGTSTYDGLALAQAMIEYVAETSHAKTLFSTHYHELTTLDQ 725 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 +L N + ++ +IFLHKV G D SYGIQV KLA LP VISRA IL FE Sbjct: 726 ALPSLKNVHVAANEYKGELIFLHKVKDGAVDDSYGIQVAKLADLPEKVISRAQVILSEFE 785 Query: 841 ------------KLYHH----NQKDMRLYYPEIQTKESKNNLSKND------KLF----- 873 K+ + NQ+++ L +E+ + LS+ D LF Sbjct: 786 ASAGKKSSISNLKMVENEPEINQENLNL-----SVEETTDTLSQKDFEQASFDLFENDQE 840 Query: 874 --VE-KIKCLNLDEMSPLTALKTL 894 +E +IK LNL M+P+ AL L Sbjct: 841 SEIELQIKNLNLSNMTPIEALVKL 864 >gi|15605525|ref|NP_220311.1| DNA mismatch repair protein MutS [Chlamydia trachomatis D/UW-3/CX] gi|7387913|sp|O84797|MUTS_CHLTR RecName: Full=DNA mismatch repair protein mutS gi|3329257|gb|AAC68387.1| DNA Mismatch Repair [Chlamydia trachomatis D/UW-3/CX] gi|296436342|gb|ADH18516.1| DNA mismatch repair protein MutS [Chlamydia trachomatis G/9768] gi|296437272|gb|ADH19442.1| DNA mismatch repair protein MutS [Chlamydia trachomatis G/11222] gi|296438201|gb|ADH20362.1| DNA mismatch repair protein MutS [Chlamydia trachomatis G/11074] gi|297140702|gb|ADH97460.1| DNA mismatch repair protein MutS [Chlamydia trachomatis G/9301] gi|297748920|gb|ADI51466.1| MutS [Chlamydia trachomatis D-EC] gi|297749800|gb|ADI52478.1| MutS [Chlamydia trachomatis D-LC] Length = 820 Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust. Identities = 298/828 (35%), Positives = 467/828 (56%), Gaps = 43/828 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+Q+ + K D L+ +R+G+FYE FFDDAL+ ++ L ITLT+R +++PM G Sbjct: 6 TPMMQQWHQCKEQAGDCLLLFRLGEFYEAFFDDALILAQNLDITLTQR-----QNVPMSG 60 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P + Y+ +L+ G ++AI EQ ++ G+K LV R + RL+TPG L LL Sbjct: 61 IPATCLDGYVDRLVSRGFKVAIAEQADN-----TEGSKGLVPRTINRLITPGALLSSSLL 115 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREIIFSEKEL 204 +NY++A+ ++ + + ++ +D+S G F ++ ++ + LI I R+ P E+ L Sbjct: 116 PEKANNYVLAINQVGSLYGLSCLDLSIGTFLVAEYDNTKDLIEAICRLAPTEL------L 169 Query: 205 SHAEY--------KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 SHA++ K L + L + F++ + ++ + ++++D FG V Sbjct: 170 SHAKFYQKNEAVIKQLQQHLRITLSEYVSWAFEYQSATKKLYTCFQVSSLDGFGLQGLVP 229 Query: 257 K-TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SL 314 AA A +SYI+ ++ + P+ Q L ID A+++NLE+L + G + SL Sbjct: 230 AINAAGALLSYIQDKLLLPISHLSIPKIYGQQKHLLIDKASQTNLELLSPIHGEHGKGSL 289 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L+ ++ + T GGRL + +P D +I R DS+ FF+Q L +++ L D+ Sbjct: 290 LQVMERTSTPMGGRLLRNTLINPFYDLKEITLRQDSVEFFLQQADLRKILKRQLSCVRDL 349 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R +++ PKDI +RD + S +I + LPE L L SL KT Sbjct: 350 ERLATKISTSLATPKDIGTLRDSLLSCTHIADNLQNCALPEFLENKFLIAPPLC-SLIKT 408 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 LS+ L +LP +G + L R++++ SK I Q + ET IK LK+ Sbjct: 409 LSTELIQELPLKVSEGNIFANHYHPDLLRLRNIKENSKSWILEYQERIRNETGIKKLKVC 468 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 + LGY+IEV S+ A L K+ FI RQ+ + RFTT EL ++ + + + Sbjct: 469 YAQALGYYIEVASNLAPQLPKE------FIRRQSRLHAERFTTQELQQFQDEVFSVEDKL 522 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 +E + F+ L I+E + + S +A +D ++LA LA E +Y RP++D+S + Sbjct: 523 QTLETKLFKELCFYIVEHRDLILKLSTAVADLDYVVSLAELAAEYDYRRPLVDHSDALSI 582 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 G HP+ L + + FI ND + + + LLTGPNM GKST++RQ AL+V Sbjct: 583 TKGMHPVALTLLDKGT---FIPNDTVMHSAQTR----MILLTGPNMAGKSTYIRQIALLV 635 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMAQMGS++PA AHIGIVDK+F+R+G+ DNL+ G STFMVEM ETA+IL+ AT++S VI Sbjct: 636 IMAQMGSFIPARSAHIGIVDKIFTRIGAGDNLSKGMSTFMVEMAETANILHNATDRSLVI 695 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQV 792 LDEIGRGT+T DGL+IA A +E+L T+ + + L ATH+ ELT+L + N V Sbjct: 696 LDEIGRGTSTYDGLAIAQAVVEFLLFTDGKKAKTLFATHYKELTELEMHCQHVENFHAMV 755 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 +++ IF+++++ G + S+GI V KLAG P +V+SRA IL FE Sbjct: 756 KENSGQPIFMYEIVKGHSKKSFGIHVAKLAGFPLSVVSRAQQILHQFE 803 >gi|257887935|ref|ZP_05667588.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,141,733] gi|257823989|gb|EEV50921.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,141,733] Length = 881 Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust. Identities = 303/908 (33%), Positives = 490/908 (53%), Gaps = 70/908 (7%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM QY+ IK+ D+ +FYR+GDFYELF++DA+ AS+ L +TLT R ++ + IPMC Sbjct: 7 NTPMMEQYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELTLTSRNRNAEEPIPMC 66 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H A YI LI+ G+++AICEQ+E P + K +V+R V++LVTPGT+ + + Sbjct: 67 GVPHHAAQGYIDTLIEKGYKVAICEQVEDP-----KTTKGMVKREVIQLVTPGTVMDSKG 121 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 LS D+N+L AV E+ A+ D+STG K + + + ++++ + +E++ E Sbjct: 122 LSAKDNNFLTAVVSQGNEFGFAYADLSTGELKTARLHDEEAVLNEASALQTKELVLG-SE 180 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 ++ + L LG V Q + + E+ + VD +EK A Sbjct: 181 ITDTLREQLSGRLGLVFSQQ------NEMEENAEFSFLTSELVDP------LEKEATGKL 228 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 ++Y+ TQ + I L +D ++ NLE+ +++ +G + +LL +D + Sbjct: 229 LTYLAVTQKRSLAHIQKAVEYQPDHFLKMDYYSKFNLELSQSIRTGKKHGTLLWLLDETK 288 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGRL + + PL + +I R + + + + +Q L D+ R R+ Sbjct: 289 TAMGGRLLKQWLDRPLIQAKQIKARQEMVASLLDSYFERIDLQSALTKVYDLERLAGRVA 348 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE---KTLSSML 439 G +D+ ++ + I L D +G + L Q ++ + + + Sbjct: 349 FGNVNGRDLIQLKTSLEQVPMIRGLIEGID-----QGQWQSLLSEMQPMDHLVQLIDQAI 403 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 DD P +G ++DG + LD RS K+ +A L+ K +ET IKNLKI N Sbjct: 404 QDDPPLQITEGNIIKDGFNEQLDTYRSAMRNGKKWLAELEAKERQETGIKNLKIGFNRVF 463 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IE+T A++ +LE +R +QT++N RF T EL +LE +I A ++ +E Sbjct: 464 GYYIEITK--ANLGNAELEKYER---KQTLANAERFITPELKELETQILEAEEKSVDLEY 518 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP-IIDNSTNFIVKDGR 618 + F + + + + L ++ I+ +D+ + A +++ Y RP ++ + ++KDGR Sbjct: 519 QLFLAVREEVKKAIQPLQVLAKAISAVDVLQSFATISERYQYVRPELVSDKHQLLIKDGR 578 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VEK L Q +I N +++ + L+TGPNM GKST++RQ AL V+MAQ Sbjct: 579 HPVVEKVLGHQE---YIPNSVEMA-----EDEMILLITGPNMSGKSTYMRQLALTVLMAQ 630 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 MG +VPA A + I D++F+R+G++D+L +G+STFMVEM+E L AT S ++ DE+ Sbjct: 631 MGCFVPAKQAVLPIFDRIFTRIGASDDLIAGQSTFMVEMMEANQALRYATPNSLILFDEL 690 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGTAT DG+++A A IEY+H + + L +TH+HELT L K L + N + + + Sbjct: 691 GRGTATYDGMALAQAIIEYIHRHVQAKTLFSTHYHELTVLEKELPQLKNVHVGAVEKDGE 750 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL--YHH------NQKDM 850 ++FLHK++ G AD SYGI V K+AGLP ++ RA DIL T E HH +K Sbjct: 751 VVFLHKMMDGPADRSYGIHVAKIAGLPANLLERAADILHTLENGDNGHHTVPAEIGEKTK 810 Query: 851 RLYYPEIQTKESKNN--------------------LSKNDKLFVEKIKCLNLDEMSPLTA 890 +I+ K N LS+N+ +E +K +NL EM+P+ A Sbjct: 811 TAKQEQIKPPAEKVNQDPIQDSVKEETQQLSLFGELSENETEVIESLKQINLLEMTPMDA 870 Query: 891 LKTLYAVK 898 L TLY ++ Sbjct: 871 LNTLYELQ 878 >gi|333001078|gb|EGK20648.1| DNA mismatch repair protein MutS [Shigella flexneri K-272] Length = 841 Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust. Identities = 310/892 (34%), Positives = 481/892 (53%), Gaps = 73/892 (8%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IPM G+P Sbjct: 1 MMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPMAGIP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT++++ LL Sbjct: 61 YHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTISDEALLQE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKELSH 206 N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++++E Sbjct: 116 RQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELLYAE---DF 172 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT-----AAA 261 AE SL E + ++ I +R T D G F VE AA Sbjct: 173 AEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENAPRGLCAAG 226 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 + Y K TQ P I E Q ++ +D+A R NLEI + L+G E +L +D + Sbjct: 227 CLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENTLASVLDCT 286 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +T G R+ + P+ D+ + R +I +Q+ +Q +L+ D+ R L+RL Sbjct: 287 VTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAELQPVLRQVGDLERILARL 343 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP-----------QS 430 + P+D+A +R + LPE LR +E + P Sbjct: 344 ALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQALREKMGEFAE 390 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L L + D P RDGG + G + LDE R+L D + + L+++ E T + Sbjct: 391 LRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERERTGLDT 450 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + Sbjct: 451 LKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKEYEDKVLTS 504 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY P + Sbjct: 505 KGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFIDKP 564 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNMGGKST++RQ Sbjct: 565 GIRITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQT 615 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT Sbjct: 616 ALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEY 675 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L Sbjct: 676 SLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHL 735 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH---NQ 847 + + I F+H V G A SYG+ V LAG+P VI RA L+ E + + Q Sbjct: 736 DALEHGDTIAFMHSVQDGAASKSYGLAVAVLAGVPKEVIKRARQKLRELESISPNAAATQ 795 Query: 848 KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 D T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 796 VD--------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 839 >gi|260558367|ref|ZP_05830563.1| MutS [Enterococcus faecium C68] gi|35367191|gb|AAN85564.1| MutS [Enterococcus faecium] gi|260075541|gb|EEW63847.1| MutS [Enterococcus faecium C68] Length = 881 Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust. Identities = 303/908 (33%), Positives = 493/908 (54%), Gaps = 70/908 (7%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM QY+ IK+ D+ +FYR+GDFYELF++DA+ AS+ L +TLT R ++ + IPMC Sbjct: 7 NTPMMEQYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELTLTSRNRNAEEPIPMC 66 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H A YI LI+ G+++AICEQ+E P + K +V+R V++LVTPGT+ + + Sbjct: 67 GVPHHAAQGYIDALIEKGYKVAICEQVEDP-----KTTKGMVKREVIQLVTPGTVMDSKG 121 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 LS D+N+L AV E+ A+ D+STG K + + + ++++ + +E++ E Sbjct: 122 LSAKDNNFLTAVVSQGNEFGFAYADLSTGELKTARLHDEEAVLNEASALQTKELVLG-SE 180 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 ++ + L LG V Q + + E+ + VD +EK A Sbjct: 181 ITDTLREQLSGRLGLVFSQQ------NEMEENAEFSFLTSELVDP------LEKEATGKL 228 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 ++Y+ TQ + I L +D ++ NLE+ +++ +G + +LL +D + Sbjct: 229 LTYLSVTQKRSLAHIQKAVEYQPDHFLKMDYYSKFNLELSQSIRTGKKHGTLLWLLDETK 288 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGRL + + PL + +I R + + + + +Q L D+ R R+ Sbjct: 289 TAMGGRLLKQWLDRPLIQAKQIKARQEMVASLLDSYFERIDLQSALTKVYDLERLAGRVA 348 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE---KTLSSML 439 G +D+ ++ + I L D +G + L Q ++ + + + Sbjct: 349 FGNINGRDLIQLKTSLEQVPMIRGLIEGID-----QGQWQSLLSEMQPMDHLVQLIDQAI 403 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 DD P +G ++DG + LD RS K+ +A L+ K +ET IKNLKI N Sbjct: 404 QDDPPLQITEGNIIKDGFNEQLDMYRSAMRNGKKWLAELEAKERQETGIKNLKIGFNRVF 463 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IE+T A++ +LE +R +QT++N RF T EL +LE +I A ++ +E Sbjct: 464 GYYIEITK--ANLGNAELEKYER---KQTLANAERFITPELKELETQILEAEEKSVDLEY 518 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP-IIDNSTNFIVKDGR 618 + F + + + + L ++ I+ +D+ + A +++ Y RP ++ + ++KDGR Sbjct: 519 QLFLAVREEVKKAIQPLQVLAKAISAVDVLQSFATISERYQYVRPELVSDKHQLLIKDGR 578 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VEK L Q +I N +++ + L+TGPNM GKST++RQ AL V++AQ Sbjct: 579 HPVVEKVLGHQE---YIPNSVEMA-----EDEMILLITGPNMSGKSTYMRQLALTVLLAQ 630 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 MG +VPA A + I D++F+R+G++D+L +G+STFMVEM+E L AT S ++ DE+ Sbjct: 631 MGCFVPAKQAVLPIFDRIFTRIGASDDLIAGQSTFMVEMMEANQALRYATPNSLILFDEL 690 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGTAT DG+++A A IEY+H + + L +TH+HELT L K L + N + + + Sbjct: 691 GRGTATYDGMALAQAIIEYIHRHVQAKTLFSTHYHELTVLEKELPQLKNVHVGAVEKDGE 750 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL--YHHN---------- 846 ++FLHK++ G AD SYGI V K+AGLP+ ++ RA DIL T E HH Sbjct: 751 VVFLHKMMDGPADKSYGIHVAKIAGLPSNLLERAADILHTLENGDNGHHTVPAEVEEKTK 810 Query: 847 -QKDMRLYYP-------EIQTKESKNN--------LSKNDKLFVEKIKCLNLDEMSPLTA 890 K ++ P IQ + + N LS+N+ +E +K +NL EM+P+ A Sbjct: 811 TAKQEQIKPPAEKVNQDHIQDRVKEENQQLSLFSELSENETEVIESLKQINLLEMTPMDA 870 Query: 891 LKTLYAVK 898 L TLY ++ Sbjct: 871 LNTLYELQ 878 >gi|325129270|gb|EGC52109.1| DNA mismatch repair protein MutS [Neisseria meningitidis OX99.30304] gi|325203133|gb|ADY98587.1| DNA mismatch repair protein MutS [Neisseria meningitidis M01-240149] gi|325209002|gb|ADZ04454.1| DNA mismatch repair protein MutS [Neisseria meningitidis NZ-05/33] Length = 864 Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust. Identities = 309/894 (34%), Positives = 476/894 (53%), Gaps = 64/894 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM+QY+ IK+ + D LVFYRMGDFYE+FFDDA+ A++ L ITLT RG+ G+ + M G Sbjct: 7 SPMMQQYLGIKAQHTDKLVFYRMGDFYEMFFDDAVEAAKLLDITLTTRGQVDGEPVKMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ +L+K+G +AICEQ+ + K V R VVR+VTPGTLT+ LL Sbjct: 67 VPFHAAEQYLARLVKLGKSVAICEQV-----GEVGAGKGPVERKVVRIVTPGTLTDSALL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 ++N ++AV+ + +AW + +G FK + D+L ++ R+ EI+ + Sbjct: 122 EDKETNRIVAVSPDKKYIGLAWASLQSGEFKTKLTTVDKLDDELARLQAAEILLPDS--- 178 Query: 206 HAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQ---VEKTAAA 261 K+ + V + N + F E + +Y+ + FG + V AA Sbjct: 179 ----KNAPQLQTASGVTRLNAWQFAADAGEKLLTEYFGCQDLRGFGLDGKEHAVAIGAAG 234 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 A ++YI+ TQ + + E + +D+A R NLEI +TLSG + +L+ T+D Sbjct: 235 ALLNYIRLTQNLMPQHLDGLSLETDSQYIGMDAATRRNLEITQTLSGKKSPTLMSTLDLC 294 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G RL A + PL + I R +++ P+Q LK+ D+ R +R+ Sbjct: 295 ATHMGSRLLALWLHHPLRNRAHIRARQEAVAALESQ---YKPLQCRLKNIADIERIAARI 351 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL-PQSLEKTLSSMLS 440 +G P+D+A +RD + I DL +E LK + P++L T + Sbjct: 352 AVGNARPRDLASLRDSLFELAQI-------DLSANGSSLLETLKAVFPENL-STAEQLRQ 403 Query: 441 DDLP---TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 LP + +DG + G LDE R +++ + L+ K E T + LK++ N Sbjct: 404 AILPEPSVWLKDGNVINHGFHPELDELRRIQNHGDEFLLDLEAKERERTGLSTLKVEFNR 463 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 G++IE++ + A D + RQT+ N RF T EL E+++ A AL + Sbjct: 464 VHGFYIELSKTQAEQAPAD------YQRRQTLKNAERFITPELKAFEDKVLTAQEQALAL 517 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + F+ + + L A++ A +D+ + LAKE+N+ RP + +++G Sbjct: 518 EKQLFDGVLKNLQTALPQLQKAAKAAAALDVLSTFSALAKERNFVRPEFADYPAIHIENG 577 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ ++ F AN +L + +L LLTGPNMGGKST++RQ ALIV++A Sbjct: 578 RHPVVEQQVRH-----FTANHTNLD-----HKHRLMLLTGPNMGGKSTYMRQVALIVLLA 627 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 G +VPA A IG +D++F+R+G++D+LAS RSTFMVEM ETA IL+ AT QS V++DE Sbjct: 628 HTGCFVPADAATIGPIDQIFTRIGASDDLASNRSTFMVEMSETAYILHHATEQSLVLMDE 687 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 +GRGT+T DGL++A A E+L + N+ L ATH+ ELT L ++ N L + + Sbjct: 688 VGRGTSTFDGLALAHAVAEHLLQKNKSFSLFATHYFELTYLPEAHAAAVNMHLSALEQGQ 747 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 I+FLH++ PG A SYGI V KLAGLP + A L E N+ + ++ Sbjct: 748 DIVFLHQIQPGPAGKSYGIAVAKLAGLPVRALKSAQKHLNELENQAAANRPQLDIF---- 803 Query: 858 QTKESKNNLSKNDKLFVEK-------------IKCLNLDEMSPLTALKTLYAVK 898 T S+ N FV+K ++ L+ D ++P AL LY +K Sbjct: 804 STMPSEKGDEPNVGNFVDKAEEKHFEGILAAALEKLDPDSLTPRKALSELYRLK 857 >gi|116493022|ref|YP_804757.1| DNA mismatch repair protein MutS [Pediococcus pentosaceus ATCC 25745] gi|122265514|sp|Q03EQ7|MUTS_PEDPA RecName: Full=DNA mismatch repair protein mutS gi|116103172|gb|ABJ68315.1| DNA mismatch repair protein MutS [Pediococcus pentosaceus ATCC 25745] Length = 873 Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust. Identities = 296/827 (35%), Positives = 470/827 (56%), Gaps = 50/827 (6%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S TPMMRQY+EIK+ PD+ +FYR+GDFYELF+DDA+ S+ L +TLT R K+ IPM Sbjct: 6 SDTPMMRQYMEIKNQYPDAFLFYRIGDFYELFYDDAVKGSQLLELTLTARSKNADDPIPM 65 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVP H A +YI L+ G+++AICEQ+E P R K +V+R V++LVTPGT T+ Sbjct: 66 CGVPHHAAQNYIDILVDQGYKVAICEQMEDP-----RTAKGMVKREVIQLVTPGTTTDKS 120 Query: 144 LLSPTDSNYLMAV---ARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIF 199 ++NYL AV ++ + ++ A+ D+STG K++ + D +I++ + + +EI+ Sbjct: 121 AEDAKENNYLTAVNFDSKTK-KYGFAYTDLSTGELKVAILDDFDSVINEAVGLQTKEIVT 179 Query: 200 SEKELSHAE-YKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 E S AE ++ F+ L + Q V +S I D + T ++ Sbjct: 180 DE---SLAESFEERFKELNILVSKQSEVEISAELS-YLIQDLTSSTEIEVVKQL------ 229 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKT 317 ++Y++ TQ N I + L +D A++ NLE+ R + +G ++ +LL Sbjct: 230 -----LTYVQTTQKRNLAHIQKAVAYEPSFFLRMDHASKYNLELTRLIRTGKKQGTLLWL 284 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D + T GGRL + + PL +I +R D + + + + +Q+ L D+ R Sbjct: 285 LDETKTAMGGRLLKQWLDRPLIRKKEIISRQDRVQVLVDHFFERSNLQEELTKVYDLERL 344 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAV--EKLKKL-PQS-LEK 433 R+ G +D+ I+ ++L + + EEL V + L+ L P S + + Sbjct: 345 AGRVAFGSVNGRDL------IQLKTSLLQIPKVRHILEELSEPVFDDALEHLDPVSDIAE 398 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + + + +D P DG ++DG A LDE R K+ IA LQ + T IK LKI Sbjct: 399 LIQNAIDEDAPISVTDGDIIKDGYHAKLDEYRDAMRNGKKWIADLQAQERATTGIKTLKI 458 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GY+IEVT ++ + + + R+ +QT++N RF T EL + E I A Sbjct: 459 GYNKVFGYYIEVTRANLANI-----PEGRYERKQTLTNAERFITPELKEKERIILEAEQK 513 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + +E + F+ + I +Q E L + ++ +A +D+ + A+++++ + +P + + Sbjct: 514 STDLEYQLFKEIRELIKKQIERLQDLAKQVAELDVLQSFAVVSEKYQFVKPTMTKNHAIE 573 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +KDGRHP+VEK + QS ++ N+ D+ D + L+TGPNM GKST++RQ AL Sbjct: 574 IKDGRHPVVEKVMGHQS---YVPNNIDMDDNTD-----ILLITGPNMSGKSTYMRQLALT 625 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 VIMAQMG +V AS A + I D++F+R+G+AD+L SG+STFMVEM E L T+ S V Sbjct: 626 VIMAQMGCFVAASEATLPIFDQIFTRIGAADDLISGQSTFMVEMQEANRALKDGTSNSLV 685 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 + DEIGRGTAT DG+++A + IE++H+ + L +TH+HELT+L +SL+ N + Sbjct: 686 LFDEIGRGTATYDGMALAQSIIEFIHQNVHAKTLFSTHYHELTELDQSLEHLKNVHVGAV 745 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N ++FLHK+ G AD SYGI V KLAG+P+ ++ RA IL+ E Sbjct: 746 EQNGNLVFLHKMEDGPADKSYGIHVAKLAGMPDKLLKRASVILEKLE 792 >gi|227550809|ref|ZP_03980858.1| DNA mismatch repair protein MutS [Enterococcus faecium TX1330] gi|257893264|ref|ZP_05672917.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,231,408] gi|257896447|ref|ZP_05676100.1| DNA mismatch repair protein MutS [Enterococcus faecium Com12] gi|227180046|gb|EEI61018.1| DNA mismatch repair protein MutS [Enterococcus faecium TX1330] gi|257829643|gb|EEV56250.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,231,408] gi|257833012|gb|EEV59433.1| DNA mismatch repair protein MutS [Enterococcus faecium Com12] Length = 881 Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust. Identities = 303/908 (33%), Positives = 490/908 (53%), Gaps = 70/908 (7%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM QY+ IK+ D+ +FYR+GDFYELF++DA+ AS+ L +TLT R ++ + IPMC Sbjct: 7 NTPMMEQYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELTLTSRNRNAEEPIPMC 66 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H A YI LI+ G+++AICEQ+E P + K +V+R V++LVTPGT+ + + Sbjct: 67 GVPHHAAQGYIDTLIEKGYKVAICEQVEDP-----KTTKGMVKREVIQLVTPGTVMDSKG 121 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 LS D+N+L AV E+ A+ D+STG K + + + ++++ + +E++ E Sbjct: 122 LSAKDNNFLTAVVSQGNEFGFAYADLSTGELKTARLHDEEAVLNEASALQTKELVLG-SE 180 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 ++ + L LG V Q + + E+ + VD +EK A Sbjct: 181 ITDTLREQLSGRLGLVFSQQ------NEMEENAEFSFLTSELVDP------LEKEATGKL 228 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 ++Y+ TQ + I L +D ++ NLE+ +++ +G + +LL +D + Sbjct: 229 LTYLAVTQKRSLAHIQKAVEYQPDHFLKMDYYSKFNLELSQSIRTGKKHGTLLWLLDETK 288 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGRL + + PL + +I R + + + + +Q L D+ R R+ Sbjct: 289 TAMGGRLLKQWLDRPLIQAKQIKARQEMVASLLDSYFERIDLQSALTKVYDLERLAGRVA 348 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE---KTLSSML 439 G +D+ ++ + I L D +G + L Q ++ + + + Sbjct: 349 FGNVNGRDLIQLKTSLEQVPMIRGLIEGID-----QGQWQSLLSEMQPMDHLVQLIDQAI 403 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 DD P +G ++DG + LD RS K+ +A L+ K +ET IKNLKI N Sbjct: 404 QDDPPLQITEGNIIKDGFNEQLDTYRSAMRNGKKWLAELEAKERQETGIKNLKIGFNRVF 463 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IE+T A++ +LE +R +QT++N RF T EL +LE +I A ++ +E Sbjct: 464 GYYIEITK--ANLGNAELEKYER---KQTLANAERFITPELKELETQILEAEEKSVDLEY 518 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP-IIDNSTNFIVKDGR 618 + F + + + + L ++ I+ +D+ + A +++ Y RP ++ + ++KDGR Sbjct: 519 QLFLAVREEVKKAIQPLQVLAKAISAVDVLQSFATISERYQYVRPELVSDKHQLLIKDGR 578 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VEK L Q +I N +++ + L+TGPNM GKST++RQ AL V+MAQ Sbjct: 579 HPVVEKVLGHQE---YIPNSVEMA-----EDEMILLITGPNMSGKSTYMRQLALTVLMAQ 630 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 MG +VPA A + I D++F+R+G++D+L +G+STFMVEM+E L AT S ++ DE+ Sbjct: 631 MGCFVPAKQAVLPIFDRIFTRIGASDDLIAGQSTFMVEMMEANQALRYATPNSLILFDEL 690 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGTAT DG+++A A IEY+H + + L +TH+HELT L K L + N + + + Sbjct: 691 GRGTATYDGMALAQAIIEYIHRHVQAKTLFSTHYHELTVLEKELPQLKNVHVGAVEKDGE 750 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL--YHH------NQKDM 850 ++FLHK++ G AD SYGI V K+AGLP ++ RA DIL T E HH +K Sbjct: 751 VVFLHKMMDGPADKSYGIHVAKIAGLPANLLERAADILHTLENGDNGHHTVPAEIEEKTK 810 Query: 851 RLYYPEIQTKESKNN--------------------LSKNDKLFVEKIKCLNLDEMSPLTA 890 +I+ K N LS+N+ +E +K +NL EM+P+ A Sbjct: 811 TAKQEQIKPPAEKVNQDPIQDSVKEETQQLSLFGELSENETEVIESLKQINLLEMTPMDA 870 Query: 891 LKTLYAVK 898 L TLY ++ Sbjct: 871 LNTLYELQ 878 >gi|126656702|ref|ZP_01727916.1| DNA mismatch repair protein [Cyanothece sp. CCY0110] gi|126621922|gb|EAZ92630.1| DNA mismatch repair protein [Cyanothece sp. CCY0110] Length = 884 Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust. Identities = 296/837 (35%), Positives = 464/837 (55%), Gaps = 36/837 (4%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGK 79 +K TPM + Y+++K P++L+ YR+GDF+E FF DA+ S+ L + LT + GK +G+ Sbjct: 28 VKKLTPMYQHYVKVKQQYPNALLLYRVGDFFECFFQDAVTISQELELMLTSKEGGKEIGR 87 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 + M GVP H + Y + L++ G+ +AIC+Q+E +A +G +V R + +L+TPGTL Sbjct: 88 -VAMTGVPHHALDRYSRLLVEKGYAVAICDQVEDSAQAAAQGR--MVERQITKLLTPGTL 144 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREII 198 T++ +LS +NYL AV W +A+ DISTG F + L +++R+ P EI+ Sbjct: 145 TDEGMLSAKHNNYLAAVIIAGEHWGLAYADISTGEFFTTQSKELTNLNLELLRLQPAEIL 204 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVF---------FDHSISESRIADYYNITTVDTF 249 E +A P+ F F + ++S++ + + +++ F Sbjct: 205 IPTNAPDINSLLRPGEKSQYLADVLPDCFCYSLRSQTPFTLNEAKSKLLINFRVRSLEGF 264 Query: 250 GS-FSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-S 307 G + AA + YI+ TQ ++ + + L +D R NLEI +T+ Sbjct: 265 GCEHLPLAIRAAGGLLEYIEDTQKAHQVPLQLLRTYNQVDFLILDYQTRRNLEITQTVRD 324 Query: 308 GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI 367 GS SLL +D + T GGR + PL I R +SI I NP L I+++ Sbjct: 325 GSFHGSLLWALDRTCTAMGGRALRRWLLEPLISIKGIIARQNSIQELIDNPTLRQDIRQL 384 Query: 368 LKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL 427 L+S D+ R R+ G +D+ + + + + L L+ ++ L+ + Sbjct: 385 LRSIYDLERISGRVGAGTANARDLLSLAESLVKLKELAELVLQGQ-----SLYLKALQNI 439 Query: 428 PQSLEKTLSSMLSDDL----PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 P LEK L + D L P +DGG +RDG +A LD R + ++ +A+L++ Sbjct: 440 PPDLEK-LGHYVIDHLVESPPLHLKDGGVIRDGINADLDTMRKRLEDDRQWLANLEITER 498 Query: 484 EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDL 543 E T + NLK+ +N GY++ + S A ++ + ++ +QT++N R+ T EL + Sbjct: 499 ERTGVSNLKVGYNKTFGYYLSMPRSKAE------QAPNNYVRKQTLTNEERYITPELKER 552 Query: 544 ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCR 603 E RI A + +E E F L + E+++ + ++ +A ID+ A +A Q YCR Sbjct: 553 ETRILTAQDDLNKLEYEIFVELRLKVAEKAQEIRKIAKAVAAIDVLSGFAEIAVFQGYCR 612 Query: 604 PIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 P I +S ++DGRHP+VE++L F+ N ++ + + L +LTGPN GK Sbjct: 613 PEILDSRLIEIRDGRHPVVEQSL---GFGLFVPNSTNMGNNEKETNPDLIILTGPNASGK 669 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 S +LRQ LI +MAQ GS+VPA+ A +GI D++F+RVG+ D+LA+G+STFMVEM ETA+I Sbjct: 670 SCYLRQVGLIQLMAQTGSFVPATTAKLGISDRIFTRVGAVDDLATGQSTFMVEMNETANI 729 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLK 783 LN AT +S ++LDEIGRGTAT DGLSIAW+ EYL + R + ATH+HEL +L+ L Sbjct: 730 LNHATEKSLILLDEIGRGTATFDGLSIAWSVAEYLATEVQGRTIFATHYHELNELASILS 789 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 N + V + I+FLH+V PG AD SYGI+ G+LAGLP +VISRA ++ E Sbjct: 790 NVANYQVTVQELPHEIVFLHQVRPGGADKSYGIEAGRLAGLPASVISRAKQVMNQIE 846 >gi|312973056|ref|ZP_07787229.1| DNA mismatch repair protein MutS [Escherichia coli 1827-70] gi|310332998|gb|EFQ00212.1| DNA mismatch repair protein MutS [Escherichia coli 1827-70] Length = 841 Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust. Identities = 310/892 (34%), Positives = 480/892 (53%), Gaps = 73/892 (8%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY+ +K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IPM G+P Sbjct: 1 MMQQYLRLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPMAGIP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT++++ LL Sbjct: 61 YHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTISDEALLQE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKELSH 206 N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++++E Sbjct: 116 RQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELLYAE---DF 172 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT-----AAA 261 AE SL E + ++ I +R T D G F VE AA Sbjct: 173 AEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENAPRGLCAAG 226 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 + Y K TQ P I E Q ++ +D+A R NLEI + L+G E +L +D + Sbjct: 227 CLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENTLASVLDCT 286 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +T G R+ + P+ D+ + R +I +Q+ +Q +L+ D+ R L+RL Sbjct: 287 VTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAGLQPVLRQVGDLERILARL 343 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP-----------QS 430 + P+D+A +R + LPE LR +E + P Sbjct: 344 ALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQALREKMGEFAE 390 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L L + D P RDGG + G + LDE R+L D + + L+++ E T + Sbjct: 391 LRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERERTGLDT 450 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + Sbjct: 451 LKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKEYEDKVLTS 504 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY P + Sbjct: 505 KGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFIDKP 564 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNMGGKST++RQ Sbjct: 565 GIRITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQT 615 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT Sbjct: 616 ALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEY 675 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L Sbjct: 676 SLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHL 735 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH---NQ 847 + + I F+H V G A SYG+ V LAG+P VI RA L+ E + + Q Sbjct: 736 DALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESISPNAAATQ 795 Query: 848 KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 D T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 796 VD--------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 839 >gi|170733443|ref|YP_001765390.1| DNA mismatch repair protein MutS [Burkholderia cenocepacia MC0-3] gi|238688586|sp|B1JUW8|MUTS_BURCC RecName: Full=DNA mismatch repair protein mutS gi|169816685|gb|ACA91268.1| DNA mismatch repair protein MutS [Burkholderia cenocepacia MC0-3] Length = 885 Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust. Identities = 309/901 (34%), Positives = 465/901 (51%), Gaps = 56/901 (6%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E TPMM+QY+ IK+ +PD+LVFYRMGDFYELFF+DA A+R L +TLT+RG G Sbjct: 7 EAFAGHTPMMQQYLRIKADHPDTLVFYRMGDFYELFFEDAEKAARLLDLTLTQRGASAGT 66 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 I M GVP H Y+ KL+K+G +AICEQI P +K V R VVR+VTPGTL Sbjct: 67 PIKMAGVPHHAVEQYLAKLVKMGESVAICEQIGDPAT-----SKGPVERKVVRVVTPGTL 121 Query: 140 TEDQLLSPTDSNYLMAVAR------IRTEWAIAWIDISTGIFKISTSNHDRLISDIMRID 193 T+ LLS + YL+A+ + +AW+++++G +++ D+L + + RI Sbjct: 122 TDAALLSDKNDVYLLAMCTGHNKRGVAVNIGLAWLNLASGALRLAEIEPDQLAAALERIR 181 Query: 194 PREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS 253 P EI+ + + P FD + R+ D ++ ++D FG+ S Sbjct: 182 PAEILTPDGA------TDAIPAGAGASKRVPAWHFDIASGTQRLCDQLDVASLDGFGAHS 235 Query: 254 QVEKTAAAAAISYIKK-TQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 AA A+ TQ + + E+ + +D A R NLE+ TL G+ Sbjct: 236 LTSACGAAGALLLYAAATQGQQLRHVRSLKVENETEYIGLDPATRRNLELTETLRGTESP 295 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPI--LINPIQKILKS 370 +L +D T G RL + P S +R +I + P ++ ++ L+ Sbjct: 296 TLYSLLDTCCTTMGSRLLRHWLHHPPRASVAAQSRQQAIGALLDAPANASLDALRSALRQ 355 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRD------GIRSGINILNLFLKNDLPEELRGAVEKL 424 DV R RL + P+D++ +RD +R I+ + + N + V+ Sbjct: 356 IADVERITGRLALLSARPRDLSSLRDTFAALPALRERISAI---VAN---ADALARVDAA 409 Query: 425 KKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAE 484 P L+S ++ + RDGG + G DA LDE R + + + + L+ + Sbjct: 410 LAPPAECLDLLTSAIAPEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLEARERA 469 Query: 485 ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLE 544 T I NL++++N G++IEVT + D + RQT+ N R+ T EL E Sbjct: 470 RTGIANLRVEYNKVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTFE 523 Query: 545 NRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP 604 ++ +A AL E ++ + A++ + +A +D+ A A A+ ++ P Sbjct: 524 DKALSAQERALARERALYDSVLQALLPFIPECQRVASALAELDLLAAFAERARALDWVAP 583 Query: 605 IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 + ++ GRHP+VE ++Q FIANDC KL L+TGPNMGGKS Sbjct: 584 TFTDEIGIEIEQGRHPVVEAQVEQ-----FIANDCRFG-----TERKLLLITGPNMGGKS 633 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 TF+RQ ALI +MA +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+IL Sbjct: 634 TFMRQTALIALMAYVGSYVPAKSACFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAIL 693 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR 784 N AT QS V++DEIGRGT+T DGL++AWA +L N C L ATH+ ELT L + Sbjct: 694 NDATPQSLVLMDEIGRGTSTFDGLALAWAIARHLLAHNACYTLFATHYFELTQLPAEFPQ 753 Query: 785 FHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL-- 842 N L + GI+FLH V G A+ SYG+QV +LAG+P VI A L E+ Sbjct: 754 AANVHLSAVEHGHGIVFLHAVNEGPANQSYGLQVAQLAGVPAPVIRAARKHLAYLEQQSA 813 Query: 843 -YHHNQKDMRLYYP----EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAV 897 H Q D+ P +++ ++ L +EK++ ++ D++ P AL LY + Sbjct: 814 SQHTPQLDLFSAPPAAVDDLECADAP-ALPDTPHPALEKLRDIDPDDLKPREALDLLYEL 872 Query: 898 K 898 + Sbjct: 873 R 873 >gi|323167091|gb|EFZ52809.1| DNA mismatch repair protein MutS [Shigella sonnei 53G] Length = 841 Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust. Identities = 310/892 (34%), Positives = 480/892 (53%), Gaps = 73/892 (8%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY+ +K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IPM G+P Sbjct: 1 MMQQYLRLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPMAGIP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT++++ LL Sbjct: 61 YHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTISDEALLQE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKELSH 206 N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++++E Sbjct: 116 RQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELLYAE---DF 172 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT-----AAA 261 AE SL E + ++ I +R T D G F VE AA Sbjct: 173 AEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENAPRGLCAAG 226 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 + Y K TQ P I E Q ++ +D+A R NLEI + L+G E +L +D + Sbjct: 227 CLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENTLASVLDCT 286 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +T G R+ + P+ D+ + R +I +Q+ +Q +L+ D+ R L+RL Sbjct: 287 VTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAELQPVLRQVGDLERILARL 343 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP-----------QS 430 + P+D+A +R + LPE LR +E + P Sbjct: 344 ALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQALREKMGEFAE 390 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L L + D P RDGG + G + LDE R+L D + + L+++ E T + Sbjct: 391 LRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERERTGLDT 450 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + Sbjct: 451 LKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKEYEDKVLTS 504 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY P + Sbjct: 505 KGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFIDKP 564 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNMGGKST++RQ Sbjct: 565 GIRITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQT 615 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT Sbjct: 616 ALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEY 675 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L Sbjct: 676 SLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHL 735 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH---NQ 847 + + I F+H V G A SYG+ V LAG+P VI RA L+ E + + Q Sbjct: 736 DALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESISPNAAATQ 795 Query: 848 KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 D T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 796 VD--------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 839 >gi|166154134|ref|YP_001654252.1| DNA mismatch repair protein [Chlamydia trachomatis 434/Bu] gi|166155009|ref|YP_001653264.1| DNA mismatch repair protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335373|ref|ZP_07223617.1| DNA mismatch repair protein MutS [Chlamydia trachomatis L2tet1] gi|238687400|sp|B0B918|MUTS_CHLT2 RecName: Full=DNA mismatch repair protein mutS gi|238687447|sp|B0BAP7|MUTS_CHLTB RecName: Full=DNA mismatch repair protein mutS gi|165930122|emb|CAP03605.1| DNA mismatch repair protein [Chlamydia trachomatis 434/Bu] gi|165930997|emb|CAP06559.1| DNA mismatch repair protein [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 820 Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust. Identities = 298/828 (35%), Positives = 467/828 (56%), Gaps = 43/828 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+Q+ + K D L+ +R+G+FYE FFDDAL+ ++ L ITLT+R +++PM G Sbjct: 6 TPMMQQWHQCKEQAGDCLLLFRLGEFYEAFFDDALILAQNLDITLTQR-----QNVPMSG 60 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P + Y+ +L+ G ++AI EQ ++ G+K LV R + RL+TPG L LL Sbjct: 61 IPATCLDGYVDRLVSRGFKVAIAEQADN-----TEGSKGLVPRTINRLITPGALLSSSLL 115 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREIIFSEKEL 204 +NY++A+ ++ + + ++ +D+S G F ++ ++ + LI I R+ P E+ L Sbjct: 116 PEKANNYVLAINQVGSLYGLSCLDLSIGTFLVAEYDNTKDLIEAICRLAPTEL------L 169 Query: 205 SHAEY--------KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 SHA++ K L + L + F++ + ++ + ++++D FG V Sbjct: 170 SHAKFYQKNAAVIKQLQQHLRITLSEYVSWAFEYQSATKKLYTCFQVSSLDGFGLQGLVP 229 Query: 257 K-TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SL 314 AA A +SYI+ ++ + P+ Q L ID A+++NLE+L + G + SL Sbjct: 230 AINAAGALLSYIQDKLLLPISHLSIPKIYGQQKHLLIDKASQTNLELLSPIHGEHGKGSL 289 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L+ ++ + T GGRL + +P D +I R DS+ FF+Q L +++ L D+ Sbjct: 290 LQVMERTSTPMGGRLLRNTLINPFYDLKEITLRQDSVEFFLQQEDLRKILKRQLSCVRDL 349 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R +++ PKDI +RD + S +I + LPE L L SL KT Sbjct: 350 ERLATKISTSLATPKDIGTLRDSLLSCTHIADNLQNCALPEFLENKFLIAPPLC-SLIKT 408 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 LS+ L +LP +G + L R++++ SK I Q + ET IK LK+ Sbjct: 409 LSTELIQELPLKVSEGNIFANHYHPDLLRLRNIKENSKSWILEYQERIRNETGIKKLKVC 468 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 + LGY+IEV S+ A L K+ FI RQ+ + RFTT EL ++ + + + Sbjct: 469 YAQALGYYIEVASNLAPQLPKE------FIRRQSRLHAERFTTQELQQFQDEVFSVEDKL 522 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 +E + F+ L I+E + + S +A +D ++LA LA E +Y RP++D+S + Sbjct: 523 QTLETKLFKELCFYIVEHRDLILKLSTAVADLDYVVSLAELAAEYDYRRPLVDHSDALSI 582 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 G HP+ L + + FI ND + + + LLTGPNM GKST++RQ AL+V Sbjct: 583 TKGMHPVALTLLDKGT---FIPNDTVMHSAQTR----MILLTGPNMAGKSTYIRQIALLV 635 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMAQMGS++PA AHIGIVDK+F+R+G+ DNL+ G STFMVEM ETA+IL+ AT++S VI Sbjct: 636 IMAQMGSFIPARSAHIGIVDKIFTRIGAGDNLSKGMSTFMVEMAETANILHNATDRSLVI 695 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQV 792 LDEIGRGT+T DGL+IA A +E+L T+ + + L ATH+ ELT+L + N V Sbjct: 696 LDEIGRGTSTYDGLAIAQAVVEFLLFTDGKKAKTLFATHYKELTELEMHCQHVENFHAMV 755 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 +++ IF+++++ G + S+GI V KLAG P +V+SRA IL FE Sbjct: 756 KENSGQPIFMYEIVKGHSKKSFGIHVAKLAGFPLSVVSRAQQILHQFE 803 >gi|255349190|ref|ZP_05381197.1| DNA mismatch repair protein MutS [Chlamydia trachomatis 70] gi|255503727|ref|ZP_05382117.1| DNA mismatch repair protein MutS [Chlamydia trachomatis 70s] Length = 820 Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust. Identities = 298/828 (35%), Positives = 467/828 (56%), Gaps = 43/828 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+Q+ + K D L+ +R+G+FYE FFDDAL+ ++ L ITLT+R +++PM G Sbjct: 6 TPMMQQWHQCKEQAGDCLLLFRLGEFYEAFFDDALILAQNLDITLTQR-----QNVPMSG 60 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P + Y+ +L+ G ++AI EQ ++ G+K LV R + RL+TPG L LL Sbjct: 61 IPATCLDGYVDRLVSRGFKVAIAEQADN-----TEGSKGLVPRTINRLITPGALLSSSLL 115 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREIIFSEKEL 204 +NY++A+ ++ + + ++ +D+S G F ++ ++ + LI I R+ P E+ L Sbjct: 116 PEKANNYVLAINQVGSLYGLSCLDLSIGTFLVAEYDNTKDLIEAICRLAPTEL------L 169 Query: 205 SHAEY--------KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 SHA++ K L + L + F++ + ++ + ++++D FG V Sbjct: 170 SHAKFYQKNEAVIKQLQQHLRITLSEYVSWAFEYQSATKKLYTCFQVSSLDGFGLQGLVP 229 Query: 257 K-TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SL 314 AA A +SYI+ ++ + P+ Q L ID A+++NLE+L + G + SL Sbjct: 230 AINAAGALLSYIQDKLLLPISHLSIPKIYGQQKHLLIDKASQTNLELLSPIHGEHGKGSL 289 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L+ ++ + T GGRL + +P D +I R DS+ FF+Q L +++ L D+ Sbjct: 290 LQVMERTSTPMGGRLLRNTLINPFYDLKEITLRQDSVEFFLQQEDLRKILKRQLSCVRDL 349 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R +++ PKDI +RD + S +I + LPE L L SL KT Sbjct: 350 ERLATKISTSLATPKDIGTLRDSLLSCTHIADNLQNCALPEFLENKFLIAPPLC-SLIKT 408 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 LS+ L +LP +G + L R++++ SK I Q + ET IK LK+ Sbjct: 409 LSTELIQELPLKVSEGNIFANHYHPDLLRLRNIKENSKSWILEYQERIRNETGIKKLKVC 468 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 + LGY+IEV S+ A L K+ FI RQ+ + RFTT EL ++ + + + Sbjct: 469 YAQALGYYIEVASNLAPQLPKE------FIRRQSRLHAERFTTQELQQFQDEVFSVEDKL 522 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 +E + F+ L I+E + + S +A +D ++LA LA E +Y RP++D+S + Sbjct: 523 QTLETKLFKELGFYIVEHRDLILKLSTAVADLDYVVSLAELAAEYDYRRPLVDHSDALSI 582 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 G HP+ L + + FI ND + + + LLTGPNM GKST++RQ AL+V Sbjct: 583 TKGMHPVALTLLDKGT---FIPNDTVMHSAQTR----MILLTGPNMAGKSTYIRQIALLV 635 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMAQMGS++PA AHIGIVDK+F+R+G+ DNL+ G STFMVEM ETA+IL+ AT++S VI Sbjct: 636 IMAQMGSFIPARSAHIGIVDKIFTRIGAGDNLSKGMSTFMVEMAETANILHNATDRSLVI 695 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQV 792 LDEIGRGT+T DGL+IA A +E+L T+ + + L ATH+ ELT+L + N V Sbjct: 696 LDEIGRGTSTYDGLAIAQAVVEFLLFTDGKKAKTLFATHYKELTELEMHCQHVENFHAMV 755 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 +++ IF+++++ G + S+GI V KLAG P +V+SRA IL FE Sbjct: 756 KENSGQPIFMYEIVKGHSKKSFGIHVAKLAGFPLSVVSRAQQILHQFE 803 >gi|298373977|ref|ZP_06983935.1| DNA mismatch repair protein MutS [Bacteroides sp. 3_1_19] gi|298268345|gb|EFI10000.1| DNA mismatch repair protein MutS [Bacteroides sp. 3_1_19] Length = 870 Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust. Identities = 278/826 (33%), Positives = 455/826 (55%), Gaps = 42/826 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M+QY +IK+ +PD+++ +R+GDFYE++ +DA++ + LGI TKR +G+ + M G Sbjct: 7 TPLMKQYFDIKAKHPDAILLFRVGDFYEMYGEDAVIGAEILGIVQTKRANGVGQHVEMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KL++ G R+AIC+Q+E P KK LV+R + LVTPG D +L Sbjct: 67 FPHHALDSYLPKLVRAGKRVAICDQLEDPKLTKK-----LVKRGITELVTPGVSINDNIL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 + ++N+L ++ + I+++DISTG F + + D + + P+E++ + Sbjct: 122 NHKENNFLASIHFAKEVCGISFLDISTGEFMTAEGSIDYIDKLLNNFSPKEVL-----IE 176 Query: 206 HAEYKSLFETLGNVAVAQPNVF--------FDHSISESRIADYYNITTVDTFG-SFSQVE 256 K E G P F F S +E R+ ++ + FG ++ Sbjct: 177 RGNKKRFEEAFG------PRFFIFELDDWIFTTSAAEDRLLKHFETKNLKGFGVQHLKLG 230 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 A+ A + Y+ +TQ + I R + + +D +LE++ T++ SLL Sbjct: 231 IIASGAILYYLDQTQHTHISHITALSRIEEDRYVRLDKFTVRSLELVGTMN-DEGTSLLD 289 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 ID +I+ G R+ I PL D I R + +++F + P + L+ D+ R Sbjct: 290 VIDKTISPMGSRMLRRWILFPLKDVKPIQERQEVVDYFFREPETKELLDTQLEQIGDLER 349 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 +S++ +GR P+++ ++ +R+ I + + P R E+L + + Sbjct: 350 IISKVAVGRVSPREVVQLKVALRAIEPIKEACMASGEPSLCRIG-EQLNACAL-IRDRIE 407 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 +++D P+ GG + G + LD+ R++ K + +Q + E T I +LKI N Sbjct: 408 KEINNDPPSLVNKGGIIAKGVNEELDDLRAIAYSGKDYLLKVQQREIELTGIPSLKIAFN 467 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 N GY+IEV ++ + + +I +QT+ N R+ T EL + E +I A L Sbjct: 468 NVFGYYIEVRNTHKDKVPAN------WIRKQTLVNAERYITEELKEYEEKILGAEEKILA 521 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E F L A+ E + + +I ID ++ A A+ Y RP++ +S +K Sbjct: 522 LETRLFNELVLALTEYIPPIQMNANLIGRIDCLLSFAKAAEANKYIRPVVSDSDKIDIKG 581 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP++EK L +P+IAND L D ++ ++TGPNM GKS LRQ ALI +M Sbjct: 582 GRHPVIEKQLPL--GEPYIANDVYL----DDEKQQIIIITGPNMAGKSALLRQTALITLM 635 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+G +VPA AHIGIVDK+F+RVG++DN++ G STFMVEM E + ILN T++S V+ D Sbjct: 636 AQIGCFVPAESAHIGIVDKIFTRVGASDNISVGESTFMVEMNEASDILNNMTSRSLVLFD 695 Query: 737 EIGRGTATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 E+GRGT+T DG+SIAWA +EY+HE + + L ATH+HEL ++ ++ KR N + V + Sbjct: 696 ELGRGTSTYDGISIAWAIVEYIHEHPNAKAKTLFATHYHELNEMERAFKRIKNYNVSVKE 755 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 +IFL K+IPG ++HS+GI V K+AG+P +++ R+ +ILK E Sbjct: 756 VGNKVIFLRKLIPGGSEHSFGIHVAKMAGMPKSIVKRSNEILKQLE 801 >gi|296840684|ref|ZP_06863202.2| DNA mismatch repair protein MutS [Neisseria polysaccharea ATCC 43768] gi|296840233|gb|EFH24171.1| DNA mismatch repair protein MutS [Neisseria polysaccharea ATCC 43768] Length = 856 Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust. Identities = 304/887 (34%), Positives = 472/887 (53%), Gaps = 54/887 (6%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY+ IKS + D LVFYRMGDFYELF DDA+ A++ L ITLT RG+ G I M GVP Sbjct: 1 MMQQYLAIKSQHADKLVFYRMGDFYELFLDDAVEAAKLLDITLTTRGQMDGVPIKMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A Y+ +L+K+G +A+CEQ+ + K V R VVR+VTPGTLT+ LL Sbjct: 61 FHAAEQYLARLVKMGKSVAVCEQV-----GEVGAGKGPVERKVVRIVTPGTLTDSALLED 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHA 207 ++N ++AV+ + +AW + +G FK + D+L ++ R+ EI+ + Sbjct: 116 KETNRIVAVSPDKKYIGLAWASLQSGEFKTKLTTVDKLDDELARLQAAEILLPDS----- 170 Query: 208 EYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQ---VEKTAAAAA 263 K+ + V + N + F E + +Y+ + FG + V AA A Sbjct: 171 --KNAPQLQTASGVTRLNAWQFAADAGEKLLTEYFGCQDLRGFGLDGKEHAVAIGAAGAL 228 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 ++YI+ TQ + + E + +D+A R NLEI +TLSG + +L+ T+D T Sbjct: 229 LNYIRLTQNLMPQHLDGLSLETDSQYIGMDAATRRNLEITQTLSGKKSPTLMSTLDLCAT 288 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL A + PL + I R +++ P+Q LK+ D+ R +R+ + Sbjct: 289 HMGSRLLALWLHHPLRNRAHIRARQEAVAALESQ---YEPLQCRLKNIADIERIAARIAV 345 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL-PQSL--EKTLSSMLS 440 G P+D+A +RD + + I DL +E LK + P++L +TL + + Sbjct: 346 GNARPRDLAALRDSLFALSEI-------DLSANGSSLLETLKAVFPETLPVAETLKAAVM 398 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 + + +DG + G LDE R +++ + L+ K E T + LK++ N G Sbjct: 399 PEPAVWLKDGNVINHGFHPELDELRRIQNHGDEFLLDLEAKERERTGLSTLKVEFNRVHG 458 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 ++IE++ + A D + RQT+ N RF T EL E+++ A AL +E + Sbjct: 459 FYIELSKTQAEQAPAD------YQRRQTLKNAERFITPELKAFEDKVLTAQEQALALEKQ 512 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F+ + + L A++ A +D+ + L KE+N+ RP + +++GRHP Sbjct: 513 LFDGVLKNLQTALPQLQKAAKAAAALDVLSTFSALEKERNFVRPKFADYPVIHIENGRHP 572 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE+ ++ F AN DL + +L LLTGPNMGGKST++RQ ALIV++A G Sbjct: 573 VVEQQVRH-----FTANHTDLD-----HKHRLMLLTGPNMGGKSTYMRQVALIVLLAHTG 622 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 +VPA A IG +D++F+R+G++D+LAS RSTFMVEM ETA IL+ AT QS V++DE+GR Sbjct: 623 CFVPADAATIGPIDQIFTRIGASDDLASNRSTFMVEMSETAYILHHATEQSLVLMDEVGR 682 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GT+T DGL++A A E+L + N+ L ATH+ ELT L ++ N L + + I+ Sbjct: 683 GTSTFDGLALAHAVAEHLLQKNKSFSLFATHYFELTYLPEAHTAAVNMHLSALEQGQDIV 742 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY------ 854 FLH++ PG A SYGI V KLAGLP + A L E N+ + ++ Sbjct: 743 FLHQIQPGPAGKSYGIAVAKLAGLPVRALKSAQKHLNRLENQAASNRPQLDIFSTMPSEK 802 Query: 855 ---PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P + + K + + ++ L+ D ++P AL LY +K Sbjct: 803 GDEPNVDSFVDKAEEKHFEGILAAALEKLDPDSLTPREALSELYRLK 849 >gi|293556850|ref|ZP_06675411.1| DNA mismatch repair protein MutS [Enterococcus faecium E1039] gi|291600934|gb|EFF31225.1| DNA mismatch repair protein MutS [Enterococcus faecium E1039] Length = 881 Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust. Identities = 304/908 (33%), Positives = 492/908 (54%), Gaps = 70/908 (7%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM QY+ IK+ D+ +FYR+GDFYELF +DA+ AS+ L +TLT R ++ + IPMC Sbjct: 7 NTPMMEQYLSIKAQYQDAFLFYRLGDFYELFHEDAIKASQLLELTLTSRNRNAEEPIPMC 66 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H A YI LI+ G+++AICEQ+E P + K +V+R V++LVTPGT+ + + Sbjct: 67 GVPHHAAQGYIDALIEKGYKVAICEQVEDP-----KTTKGMVKREVIQLVTPGTVMDSKG 121 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 LS D+N+L AV E+ A+ D+STG K + + + ++++ + +E++ E Sbjct: 122 LSAKDNNFLTAVVSQGNEFGFAYADLSTGELKTARLHDEEAVLNESSALQTKELVLG-SE 180 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 ++ + L LG V Q + + E+ + VD +EK A Sbjct: 181 ITDTLREQLSGRLGLVFSQQ------NEMEENAEFSFLTSELVDP------LEKEATGKL 228 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 ++Y+ TQ + I L +D ++ NLE+ +++ +G + +LL +D + Sbjct: 229 LTYLSVTQKRSLAHIQKAVEYQPDHFLKMDYYSKFNLELSQSIRTGKKHGTLLWLLDETK 288 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGRL + + PL + +I R + + + + +Q L D+ R R+ Sbjct: 289 TAMGGRLLKQWLDRPLIQAKQIKARQEMVASLLDSYFERIDLQSALTKVYDLERLAGRVA 348 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE---KTLSSML 439 G +D+ ++ + I L D +G + L Q ++ + + + Sbjct: 349 FGNVNGRDLIQLKTSLEQVPMIRGLIEGID-----QGQWQSLLSEMQPMDHLVQLIDQAI 403 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 DD P +G ++DG + LD RS K+ +A L+ K +ET IKNLKI N Sbjct: 404 QDDPPLQITEGNIIKDGFNEQLDMYRSAMRNGKKWLAELEAKERQETGIKNLKIGFNRVF 463 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IE+T A++ +LE +R +QT++N RF T EL +LE +I A ++ +E Sbjct: 464 GYYIEITK--ANLGNAELEKYER---KQTLANAERFITPELKELETQILEAEEKSVDLEY 518 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP-IIDNSTNFIVKDGR 618 + F + + + + L ++ I+ +D+ + A +++ Y RP ++ + ++KDGR Sbjct: 519 QLFLAVREEVKKAIQPLQVLAKAISAVDVLQSFATISERYQYVRPELVSDKHQLLIKDGR 578 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VEK L Q +I N +++ + L+TGPNM GKST++RQ AL V+MAQ Sbjct: 579 HPVVEKVLGHQE---YIPNSVEMA-----EDEMILLITGPNMSGKSTYMRQLALTVLMAQ 630 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 MG +VPA A + I D++F+R+G++D+L +G+STFMVEM+E L AT S ++ DE+ Sbjct: 631 MGCFVPAKQAVLPIFDRIFTRIGASDDLIAGQSTFMVEMMEANQALRYATPNSLILFDEL 690 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGTAT DG+++A A IEY+H + + L +TH+HELT L K L + N + + + Sbjct: 691 GRGTATYDGMALAQAIIEYIHRHVQAKTLFSTHYHELTVLEKELPQLKNVHVGAVEKDGE 750 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL--YHHN---------- 846 ++FLHK++ G AD SYGI V K+AGLP+ ++ RA DIL T E HH Sbjct: 751 VVFLHKMMDGPADKSYGIHVAKIAGLPSNLLERAADILHTLENGDNGHHTVPAEVEEKTK 810 Query: 847 -QKDMRLYYP-------EIQTKESKNN--------LSKNDKLFVEKIKCLNLDEMSPLTA 890 K ++ P IQ + + N LS+N+ +E +K +NL EM+P+ A Sbjct: 811 TAKQEQIKPPAEKVNQDHIQDRVKEENQQLSLFSELSENETEVIESLKQINLLEMTPMDA 870 Query: 891 LKTLYAVK 898 L TLY ++ Sbjct: 871 LNTLYELQ 878 >gi|186476157|ref|YP_001857627.1| DNA mismatch repair protein MutS [Burkholderia phymatum STM815] gi|238691309|sp|B2JIT0|MUTS_BURP8 RecName: Full=DNA mismatch repair protein mutS gi|184192616|gb|ACC70581.1| DNA mismatch repair protein MutS [Burkholderia phymatum STM815] Length = 892 Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust. Identities = 313/914 (34%), Positives = 466/914 (50%), Gaps = 71/914 (7%) Query: 15 QIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRG 74 Q ++ TPMM+QY+ IK +P +LVFYRMGDFYELFFDDA A+R L +TLT+RG Sbjct: 4 QTAAASDIAQHTPMMQQYLRIKGEHPGTLVFYRMGDFYELFFDDAEKAARLLDLTLTQRG 63 Query: 75 KHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLV 134 G I M GVP H Y+ KL+K+G +AICEQI P +K V R VVR+V Sbjct: 64 ASGGNPIKMAGVPHHAVEQYLAKLVKLGESVAICEQIGDPAT-----SKGPVERKVVRVV 118 Query: 135 TPGTLTEDQLLSPTDSNYLMAVAR------IRTEWAIAWIDISTGIFKISTSNHDRLISD 188 TPGTLT+ LLS YL+A + T +AW+++++G +++ D++ + Sbjct: 119 TPGTLTDAALLSDKSDTYLLAACAGHNRRGVVTTVGLAWLNLASGALRLAEVAPDQVAAA 178 Query: 189 IMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDT 248 + RI P EI+ ++ S T P FD + R+ D + +D Sbjct: 179 LERIRPAEILVADAPSSSDANAWSVPTGFGATTRVPLWHFDVASGTQRLCDQLEVAGLDG 238 Query: 249 FGSFS------QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEI 302 FG+ S AA + ++ + V + Y E E I +D + R NLE+ Sbjct: 239 FGAHSLTCACGAAGALLLYAAATQGQQLRHVRSLKVEY-ESEYIG----LDPSTRRNLEL 293 Query: 303 LRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP--IL 360 TL G+ +L +D T G RL + P D++ R +I + +P Sbjct: 294 TETLRGTDSPTLCSLLDTCCTTMGSRLLRHWLHHPPRDASFAQARQQAIGALLDSPPQAS 353 Query: 361 INPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE----- 415 ++ + L+ D+ R RL + P+D++ +RD F+ LPE Sbjct: 354 LDALCGALRQISDIERITGRLALLSARPRDLSSLRD----------TFIA--LPELRAQL 401 Query: 416 -ELRGAVEKLKKLPQSLEKT------LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLR 468 L GA + L ++ SLE L+ ++ + RDGG + G D LDE R + Sbjct: 402 VPLTGAADSLARIHASLEPPADCVDLLTRAVAQEPAAMIRDGGVIARGYDVDLDELRDIS 461 Query: 469 DQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQT 528 + + + L+ + T I NL++++N G++IEVT + D + RQT Sbjct: 462 ENCGQFLIDLETRERARTGIGNLRVEYNKVHGFYIEVTRGQTDKVPDD------YRRRQT 515 Query: 529 MSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDI 588 + N R+ T EL E++ +A AL E ++ L +++ + +A +D+ Sbjct: 516 LKNAERYITPELKTFEDKALSAQERALAREKALYDALLQSLLPFIADCQRVASALAELDL 575 Query: 589 SIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKN 648 A A A+ ++ P + ++ GRHP+VE ++Q FIANDC L+ Sbjct: 576 LAAFAERARALDWVAPNFSATGGIDIEQGRHPVVEAQVEQ-----FIANDCMLN-----P 625 Query: 649 SGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLAS 708 KL L+TGPNMGGKSTF+RQ ALI +MA +GSYVPA A G +D++F+R+G+AD+LA Sbjct: 626 ERKLLLITGPNMGGKSTFMRQTALIALMAYVGSYVPARRASFGPIDRIFTRIGAADDLAG 685 Query: 709 GRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLL 768 GRSTFMVEM E A+ILN AT QS V++DEIGRGT+T DGL++AWA +L N C L Sbjct: 686 GRSTFMVEMTEAAAILNDATPQSLVLMDEIGRGTSTFDGLALAWAIARHLLAHNGCHTLF 745 Query: 769 ATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTV 828 ATH+ ELT L N L + GI+FLH V G A+ SYG+QV +LAG+PN V Sbjct: 746 ATHYFELTQLPAEFPHAANVHLSAVEHGHGIVFLHAVNEGPANQSYGLQVAQLAGVPNAV 805 Query: 829 ISRAYDILKTFEKL-YHHNQKDMRLYYPEIQTKESKNN------LSKNDKLFVEKIKCLN 881 I A L E+ + L+ + E ++ L + VE+++ ++ Sbjct: 806 IRAARKHLAYLEQQSAGAPAPQLDLFSAPVAMLEDADDESIAPALDAATRTLVERLRDID 865 Query: 882 LDEMSPLTALKTLY 895 +++ P AL LY Sbjct: 866 PNDLRPRDALDLLY 879 >gi|293570767|ref|ZP_06681817.1| DNA mismatch repair protein MutS [Enterococcus faecium E980] gi|291609239|gb|EFF38511.1| DNA mismatch repair protein MutS [Enterococcus faecium E980] Length = 881 Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust. Identities = 303/908 (33%), Positives = 490/908 (53%), Gaps = 70/908 (7%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM QY+ IK+ D+ +FYR+GDFYELF++DA+ AS+ L +TLT R ++ + IPMC Sbjct: 7 NTPMMEQYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELTLTSRNRNAEEPIPMC 66 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H A YI LI+ G+++AICEQ+E P + K +V+R V++LVTPGT+ + + Sbjct: 67 GVPHHAAQGYIDALIEKGYKVAICEQVEDP-----KTTKGMVKREVIQLVTPGTVMDSKG 121 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 LS D+N+L AV E+ A+ D+STG K + + + ++++ + +E++ E Sbjct: 122 LSAKDNNFLTAVVSQGNEFGFAYADLSTGELKTARLHDEEAVLNEASALQTKELVLG-SE 180 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 ++ + L LG V Q + + E+ + VD +EK A Sbjct: 181 ITDTLREQLSGRLGLVFSQQ------NEMEENAEFSFLTSELVDP------LEKEATGKL 228 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 ++Y+ TQ + I L +D ++ NLE+ +++ +G + +LL +D + Sbjct: 229 LTYLAVTQKRSLAHIQKAVEYQPDHFLKMDYYSKFNLELSQSIRTGKKHGTLLWLLDETK 288 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGRL + + PL + +I R + + + + +Q L D+ R R+ Sbjct: 289 TAMGGRLLKQWLDRPLIQAKQIKARQEMVASLLDSYFERIDLQSALTKVYDLERLAGRVA 348 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE---KTLSSML 439 G +D+ ++ + I L D +G + L Q ++ + + + Sbjct: 349 FGNVNGRDLIQLKTSLEQVPMIRGLIEGID-----QGQWQSLLSEMQPMDHLVQLIDQAI 403 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 DD P +G ++DG + LD RS K+ +A L+ K +ET IKNLKI N Sbjct: 404 QDDPPLQITEGNIIKDGFNEQLDTYRSAMRNGKKWLAELEAKERQETGIKNLKIGFNRVF 463 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IE+T A++ +LE +R +QT++N RF T EL +LE +I A ++ +E Sbjct: 464 GYYIEITK--ANLGNAELEKYER---KQTLANAERFITPELKELETQILEAEEKSVDLEY 518 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP-IIDNSTNFIVKDGR 618 + F + + + + L ++ I+ D+ + A +++ Y RP ++++ ++KDGR Sbjct: 519 QLFLAVREEVKKAIQPLQVLAKAISAADVLQSFATISERYQYVRPELVNDKHQLLIKDGR 578 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VEK L Q +I N +++ + L+TGPNM GKST++RQ AL V+MAQ Sbjct: 579 HPVVEKVLGHQE---YIPNSVEMA-----EDEMILLITGPNMSGKSTYMRQLALTVLMAQ 630 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 MG +VPA A + I D++F+R+G++D+L +G+STFMVEM+E L AT S ++ DE+ Sbjct: 631 MGCFVPAKQAVLPIFDRIFTRIGASDDLIAGQSTFMVEMMEANQALRYATPNSLILFDEL 690 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGTAT DG+++A A IEY+H + + L +TH+HELT L K L + N + + + Sbjct: 691 GRGTATYDGMALAQAIIEYIHRHVQAKTLFSTHYHELTVLEKELPQLKNVHVGAVEKDGE 750 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL--YHH------NQKDM 850 ++FLHK++ G AD SYGI V K+AGLP ++ RA DIL T E HH +K Sbjct: 751 VVFLHKMMDGPADKSYGIHVAKIAGLPANLLERAADILHTLENGDNGHHTVPAEIEEKTK 810 Query: 851 RLYYPEIQTKESKNN--------------------LSKNDKLFVEKIKCLNLDEMSPLTA 890 +I+ K N LS+N+ +E +K +NL EM+P+ A Sbjct: 811 TAKQEQIKPPAEKVNQDPIQDSVKEENQQLSLFGELSENETEVIESLKQINLLEMTPMDA 870 Query: 891 LKTLYAVK 898 L TLY ++ Sbjct: 871 LNTLYELQ 878 >gi|319649471|ref|ZP_08003627.1| DNA mismatch repair protein [Bacillus sp. 2_A_57_CT2] gi|317398633|gb|EFV79315.1| DNA mismatch repair protein [Bacillus sp. 2_A_57_CT2] Length = 867 Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust. Identities = 300/886 (33%), Positives = 487/886 (54%), Gaps = 49/886 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+ +K+ D+ +F+R+GDFYE+FFDDAL AS+ L ITLT R + IPMCG Sbjct: 6 TPMIQQYLRVKAEYQDAFLFFRLGDFYEMFFDDALKASQELEITLTSREGGTEERIPMCG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI++LI+ G+++AICEQ E P +AK +V+R VV+L+TPGT+ E + L Sbjct: 66 VPYHSAPVYIEQLIEKGYKVAICEQTEDPKQAK-----GVVKREVVQLITPGTMMEGKGL 120 Query: 146 SPTDSNYLMAVARIRTE-WAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEK 202 ++NY+ +++ E + A D+STG K++ +S D +++++ +E++ S Sbjct: 121 QEKENNYIASISVFEDETFGFATNDLSTGETKVTMLSSGFDEVLNELSMSGAKEVVISSD 180 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 E++ + +A++ + E +AD D +T + Sbjct: 181 --FDGEWQRRMKERSVMAISFEDDCGVRDSFEGLLADLNQ----DKL-------RTTSCR 227 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYS 321 I+Y+ +TQ + + I + ID ++ NLE+ T+ S ++ SLL +D + Sbjct: 228 LINYLYRTQKRSLDHLQKVATYQINQYMKIDYFSKKNLELTETIRSKGKKGSLLWLLDET 287 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T GGRL + I PL D +I R + I + I++ LK D+ R R+ Sbjct: 288 KTAMGGRLLKQWIDRPLIDEQEIKRRHSLVETLIHSFFEREEIREKLKEVYDLERLAGRV 347 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 G +D+ ++ ++ I +L + N EE E+L + + TL S + + Sbjct: 348 AFGNVNARDLVQLKKSLQQ-IPVLKEMVSNLPNEEAVRLAERLDAC-EEVTDTLESAIME 405 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + P +DG ++DG LD+ R K IA L+ + E+T IK+LKI N GY Sbjct: 406 NPPLSLKDGNIIQDGYHEELDKYRDASRNGKTWIAQLEKQEREKTGIKSLKIGFNRVFGY 465 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IEVT ++ +LK+ ++ +QT++N RF T EL + E+ I A + +E E Sbjct: 466 YIEVTRANLHLLKEG-----QYERKQTLTNAERFITPELKEKESLILEAQEKCVELEYEL 520 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 F + + E L ++ ++ +D+ + ++++++Y +P N +KDGRHP+ Sbjct: 521 FTNVREHVKEFIPRLQKLAKTVSELDVLQCFSAVSEQRHYIKPSFSNERRVYIKDGRHPV 580 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VEK L Q ++ NDC + + + L+TGPNM GKST++RQ AL I+AQ+G Sbjct: 581 VEKVLNAQE---YVPNDCYMDADRE-----VLLITGPNMSGKSTYMRQIALTAILAQIGC 632 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 YVPAS A + I D++F+R+G+AD+L SG+STFMVEM+E + + AT S ++ DEIGRG Sbjct: 633 YVPASEAVLPIFDQVFTRIGAADDLISGQSTFMVEMLEARNAIVNATQNSLILFDEIGRG 692 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 T+T DG+++A A IEY+H + L +TH+HELT L + L++ N + + N ++F Sbjct: 693 TSTYDGMALAQAIIEYIHNRIGAKTLFSTHYHELTVLEEELQKVKNIHVSAVEQNGRVVF 752 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK------------LYHHNQKD 849 LHK+ G AD SYGI V +LA LPN +I RA +IL E + Sbjct: 753 LHKIKEGAADKSYGIHVAQLAELPNELIVRANEILTGLESNDPAPVKKEIPAAEKMAEPA 812 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 +L + E K ++S +K ++K+K L++ +M+P+ AL TLY Sbjct: 813 AQLSFFEDSEDVKKPSISSKEKKIIDKVKALDILDMTPMQALNTLY 858 >gi|255013135|ref|ZP_05285261.1| DNA mismatch repair protein MutS [Bacteroides sp. 2_1_7] Length = 869 Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust. Identities = 294/892 (32%), Positives = 484/892 (54%), Gaps = 53/892 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M+QY +IK+ +PD+++ +R+GDFYE++ +DA++ + LGI TKR +G+ + M G Sbjct: 7 TPLMKQYFDIKAKHPDAILLFRVGDFYEMYGEDAVIGAEILGIVQTKRANGVGQHVEMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KL++ G R+AIC+Q+E P KK LV+R + LVTPG D +L Sbjct: 67 FPHHALDSYLPKLVRAGKRVAICDQLEDPKLTKK-----LVKRGITELVTPGVSINDNIL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 + ++N+L ++ + I+++DISTG F + + D + + P+E++ Sbjct: 122 NHKENNFLASIHFAKEVCGISFLDISTGEFMTAEGSIDYIDKLLNNFSPKEVLIERGN-- 179 Query: 206 HAEYKSLFETLGNVAVAQPNVF--------FDHSISESRIADYYNITTVDTFG-SFSQVE 256 K FE P F F S +E R+ ++ + FG ++ Sbjct: 180 ----KKRFEE-----AFDPRFFIFELDDWIFTTSAAEDRLLKHFETKNLKGFGVQHLKLG 230 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 A+ A + Y+ +TQ + I R + + +D +LE++ T++ SLL Sbjct: 231 IIASGAILYYLDQTQHTHISHITALSRIEEDRYVRLDKFTVRSLELVGTMN-DEGTSLLD 289 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 ID +I+ G R+ I PL D I R + +++F + P + L+ D+ R Sbjct: 290 VIDKTISPMGSRMLRRWILFPLKDVKPIQERQEVVDYFFREPETKELLDTQLEQIGDLER 349 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 +S++ +GR P+++ ++ +R+ I + + P R E+L + + Sbjct: 350 IISKVAVGRVSPREVVQLKVALRAIEPIKEACMASGEPSLCRIG-EQLNACAL-IRDRIE 407 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 +++D P+ GG + G + LD+ R++ K + +Q + E T I +LKI N Sbjct: 408 KEINNDPPSLVNKGGIIAKGVNEELDDLRAIAYSGKDYLLKVQQREIELTGIPSLKIAFN 467 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 N GY+IEV ++ + + +I +QT+ N R+ T EL + E +I A +L Sbjct: 468 NVFGYYIEVRNTHKDKVPAN------WIRKQTLVNAERYITEELKEYEEKILGAEEKSLA 521 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E F L A+ E + + +I ID ++ A A+ Y RPI+ +S +K Sbjct: 522 LETRLFNELVLALTEYIPPIQMNANLIGRIDCLLSFAKAAEANKYIRPIVSDSDKIDIKG 581 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP++EK L +P+IAND L D ++ ++TGPNM GKS LRQ ALI +M Sbjct: 582 GRHPVIEKQLPL--GEPYIANDVYL----DDEKQQIIIITGPNMAGKSALLRQTALITLM 635 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+G +VPA AHIGIVDK+F+RVG++DN++ G STFMVEM E + ILN T++S V+ D Sbjct: 636 AQIGCFVPAESAHIGIVDKIFTRVGASDNISVGESTFMVEMNEASDILNNMTSRSLVLFD 695 Query: 737 EIGRGTATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 E+GRGT+T DG+SIAWA +EY+HE + + L ATH+HEL ++ ++ KR N + V + Sbjct: 696 ELGRGTSTYDGISIAWAIVEYIHEHPNAKAKTLFATHYHELNEMERAFKRIKNYNVSVKE 755 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 +IFL K+IPG ++HS+GI V K+AG+P +++ R+ +ILK E N+++ Sbjct: 756 VGNKVIFLRKLIPGGSEHSFGIHVAKMAGMPKSIVKRSNEILKQLES---ENRQEGIGGK 812 Query: 855 P--EIQTKESKNNLS---KNDKLFVE---KIKCLNLDEMSPLTALKTLYAVK 898 P I + LS +D + + +IK L+++ ++PL AL L +K Sbjct: 813 PVKAIASAAEGYQLSFFQLDDPVLSQVRDEIKNLDVNNLTPLEALNKLSEIK 864 >gi|261419511|ref|YP_003253193.1| DNA mismatch repair protein MutS [Geobacillus sp. Y412MC61] gi|319766326|ref|YP_004131827.1| DNA mismatch repair protein MutS [Geobacillus sp. Y412MC52] gi|261375968|gb|ACX78711.1| DNA mismatch repair protein MutS [Geobacillus sp. Y412MC61] gi|317111192|gb|ADU93684.1| DNA mismatch repair protein MutS [Geobacillus sp. Y412MC52] Length = 903 Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust. Identities = 286/830 (34%), Positives = 462/830 (55%), Gaps = 50/830 (6%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + S TPM++QY+ IK+ PD+ +F+R+GDFYELFFDDA+ A++ L ITLT R + + Sbjct: 1 MPSYTPMIQQYLHIKAQYPDAFLFFRLGDFYELFFDDAIKAAQELEITLTSRDGGGDERV 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A YI++LI+ G+++AICEQ+E P AK +VRR VV+L+TPGTL E Sbjct: 61 PMCGVPYHSAQGYIEQLIEKGYKVAICEQVEDPKTAK-----GVVRREVVQLITPGTLME 115 Query: 142 DQLLSPTDSNYLMAVARIR-TEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIF 199 + L+ +++YL A+ + +A+ D+STG +++ S+ + +++ + REII Sbjct: 116 GKGLTEKENHYLAALTPFADGTYGLAYADLSTGEVRLTLLSSWEEAANELHAVGAREIIV 175 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE-KT 258 + S E+ + AV+ + ++ + D +N G +Q + + Sbjct: 176 ATD--SGEEWVRELKERYGAAVSYED--------DTSLCDEWN----GVIGHVAQEKLRQ 221 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKT 317 AAA + Y+ +TQ + E + + +D ++ +LE++ T+ S R+ SLL Sbjct: 222 AAARLLHYLVRTQKRRLDHLQPAELYQVDHYMKMDRHSKLHLELVETVRSKGRKGSLLWL 281 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D ++T GGRL + + PL D +I RLD + + ++ L+ D+ R Sbjct: 282 LDETVTAMGGRLLKQWLDRPLIDRREIERRLDFVETLKTSYFERQELRDRLRGVYDIERL 341 Query: 378 LSRLKIGRGEPKDIAVIRD------GIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSL 431 + R+ G +D+ ++ +R + L L + L E L E + L +S+ Sbjct: 342 VGRVSYGNANARDLVQLKKSLLQVPALRQTVGALPLAEADKLCERLDPCEELVDLLERSI 401 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + + P ++G ++DG D LD R K IA L+ K E T IK+L Sbjct: 402 Q--------EQPPLSVKEGNLIKDGYDKQLDRYRDASRNGKAWIAELEAKEREATGIKSL 453 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 K+ +N GY+IEVT + ++ + R+ +QT++N RF T EL + E I A Sbjct: 454 KVGYNRVFGYYIEVTKPNLPLV-----PEGRYERKQTLANAERFITPELKEKEALILEAE 508 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 ++ +E E F + + + L ++ IA +D+ + A ++ E Y RP Sbjct: 509 EKSIELEYELFVAIREQVKQYIPRLQTLAKAIAELDVLQSFATISDEYRYVRPQFSTERV 568 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 +++ GRHP+VEK L Q ++ NDC ++ ++ L+TGPNM GKST++RQ A Sbjct: 569 LVIQGGRHPVVEKVLGAQM---YVPNDCYMN-----REREMLLITGPNMAGKSTYMRQVA 620 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 L +MAQ+G +VPA A + I D++F+R+G+AD+L++G+STFMVEM+E + AT S Sbjct: 621 LTAVMAQIGCFVPAERAVLPIFDQVFTRIGAADDLSAGQSTFMVEMLEARHAIAHATQNS 680 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 ++ DEIGRGT+T DG+++A A IEY+H+ + L +TH+HELT L +SL R N + Sbjct: 681 LILFDEIGRGTSTYDGMALAQAIIEYIHDHIGAKTLFSTHYHELTALERSLPRLSNVHAR 740 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 + N ++FLH++ G AD SYGI V +LAGLP ++I RA IL EK Sbjct: 741 AIEENGKVVFLHQIADGPADKSYGIHVAELAGLPASLIERARAILAELEK 790 >gi|227529690|ref|ZP_03959739.1| DNA mismatch repair protein MutS [Lactobacillus vaginalis ATCC 49540] gi|227350480|gb|EEJ40771.1| DNA mismatch repair protein MutS [Lactobacillus vaginalis ATCC 49540] Length = 877 Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust. Identities = 288/834 (34%), Positives = 457/834 (54%), Gaps = 46/834 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K +TPMM QY ++K PD+ +FYR+GDFYELF DDA+ ++ L +TLT R IP Sbjct: 3 KKTTPMMEQYQKVKDQYPDAFLFYRLGDFYELFNDDAIKGAQLLELTLTTRNHSAKNPIP 62 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP N YI LI G+++AICEQ+E P +AK +V+R V RL+TPGT + Sbjct: 63 MCGVPHRAVNSYIDVLIDKGYKVAICEQMEDPKKAK-----GMVKRAVTRLITPGTQMDL 117 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSE 201 ++NYL + R + +A+ D+STG K + ++ D +I++++ + RE++ + Sbjct: 118 NGDQAKNNNYLAGIIRQNGHYYLAYTDLSTGELKTTDFASEDEVINELINLQSREVVLDD 177 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 ++K + QP + + +S Y D + ++ + Sbjct: 178 S--VEDDFKQQLTKRNILQSHQPEIVNEAEVS------YLTQDLTD------EGQQAVVS 223 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 +SY+ TQ + + S + ID +++NLE++ + SG R+ +L +D Sbjct: 224 LLVSYLLTTQKRSLAHLQKAISYRPSSFMKIDHYSKTNLELMTNMRSGKRQGTLAWLLDE 283 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G RL + PL D +I+ R D + +++ N IQ+ L D+ R R Sbjct: 284 TKTAMGSRLLKRWLDRPLIDPKQISARQDKVQELLEHYFERNNIQQELIKVYDLERLAGR 343 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEKLKKLPQSLEKTLSSM 438 + G +D+ ++ + I D P +L ++ L + +E ++ Sbjct: 344 VAYGSVNGRDLIQLKTSLLQVPKIKYTLETLDAPAFADLEKQLDPLSDVASLIENSIV-- 401 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 +D P DGG ++DG D LDE R + K+ IA LQ E T I NLKI +N+ Sbjct: 402 --EDPPISVTDGGVIKDGYDQQLDEYRDAMNNGKQWIADLQKHEREVTGINNLKIGYNHV 459 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IEVT + + + +DR+ +QT+ N RF+T EL + E I A + +E Sbjct: 460 FGYYIEVTKVNLNKI-----PRDRYERKQTLVNAERFSTPELKEKEALILGAQEKSTALE 514 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F + + +Q + L + +Q ++ +D+ + A+++++ ++ RP ++ +KDGR Sbjct: 515 YDVFVKIREKVKKQIKRLQSLAQALSELDVLQSFAVVSEDYHFVRPQMNTGHVLKIKDGR 574 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VEK + Q ++ ND + D + L+TGPNM GKST++RQ AL +MAQ Sbjct: 575 HPVVEKFMGHQE---YVPNDVMMDESTD-----ILLITGPNMSGKSTYMRQLALTAVMAQ 626 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 MG +VPA A + I D++F+R+G+AD+L SG STFMVEM+E + L AT++S ++ DEI Sbjct: 627 MGCFVPAERAELPIFDQIFTRIGAADDLISGESTFMVEMMEANNALMHATDRSLILFDEI 686 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGTAT DG+++A A IEY+HE R + L +TH+HELT L +L R N + ++ N Sbjct: 687 GRGTATYDGMALAQAIIEYIHEHLRAKTLFSTHYHELTALETTLSRLKNVHVGATEKNGE 746 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 ++FLHKV G AD SYGI V KLAG+P ++ RA IL + EK KD++L Sbjct: 747 LVFLHKVSAGPADKSYGIHVAKLAGMPEDLLKRADQILSSLEK------KDVKL 794 >gi|313648211|gb|EFS12656.1| DNA mismatch repair protein MutS [Shigella flexneri 2a str. 2457T] gi|332753448|gb|EGJ83828.1| DNA mismatch repair protein MutS [Shigella flexneri 4343-70] gi|332765681|gb|EGJ95894.1| DNA mismatch repair protein MutS [Shigella flexneri 2930-71] Length = 841 Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust. Identities = 310/892 (34%), Positives = 481/892 (53%), Gaps = 73/892 (8%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IPM G+P Sbjct: 1 MMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPMAGIP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT++++ LL Sbjct: 61 YHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTISDEALLQE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKELSH 206 N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++++E Sbjct: 116 RQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRSNPAELLYAE---DF 172 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT-----AAA 261 AE SL E + ++ I +R T D G F VE AA Sbjct: 173 AEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENAPRGLCAAG 226 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 + Y K TQ P I E Q ++ +D+A R NLEI + L+G E +L +D + Sbjct: 227 CLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENTLASVLDCT 286 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +T G R+ + P+ D+ + R +I +Q+ +Q +L+ D+ R L+RL Sbjct: 287 VTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FTAELQPVLRQVGDLERILARL 343 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP-----------QS 430 + P+D+A +R + LPE LR +E + P Sbjct: 344 ALRTARPRDLARMRHAFQQ------------LPE-LRAQLETVDSAPVQALREKMGEFAE 390 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L L + D P RDGG + G + LDE R+L D + + L+++ E T + Sbjct: 391 LRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERERTGLDT 450 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + Sbjct: 451 LKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKEYEDKVLTS 504 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY P + Sbjct: 505 KGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFIDKP 564 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNMGGKST++RQ Sbjct: 565 GIRITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQT 615 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI +MA +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT Sbjct: 616 ALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEY 675 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L Sbjct: 676 SLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHL 735 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH---NQ 847 + + I F+H V G A SYG+ V LAG+P VI RA L+ E + + Q Sbjct: 736 DALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESISPNAAATQ 795 Query: 848 KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 D T+ S ++ + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 796 VD--------GTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 839 >gi|15217094|gb|AAK92502.1|AF400585_1 mismatch repair protein [Acinetobacter sp. AC423D] Length = 837 Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust. Identities = 314/865 (36%), Positives = 466/865 (53%), Gaps = 52/865 (6%) Query: 53 ELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIE 112 ELFF+DA A++ LGITLT RGK G+ IPM GVP H A Y+ +L+K G + ICEQI Sbjct: 1 ELFFEDAHKAAKLLGITLTHRGKANGEPIPMAGVPYHAAEGYLARLVKKGETVVICEQI- 59 Query: 113 SPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDIST 172 + K+ V R VVR++TPGTLT+D LL+ S+ L+A+ + E IA +D+S Sbjct: 60 -----GEVTGKAPVERGVVRIITPGTLTDDALLTAHQSSNLVALCVQQNEIGIALLDLSA 114 Query: 173 GIFKISTSNHDRLISDI--MRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDH 230 G+FK+ I R+ P EI+ E + + + + L +PNV F+ Sbjct: 115 GLFKVQQQEFQLEQLGIELSRLMPSEILVDENIVDPNIIEHIKKLLDCPVTRRPNVDFNL 174 Query: 231 SISESRIADYYNITTVDTFG-SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQST 289 + ++ + D + ++T+ FG + K AAA+ I Y K+TQ P I + E Sbjct: 175 NNAQKTLCDQFAVSTLAGFGIDHLPLAKAAAASLIHYAKETQKTALPHIRSIQLEQSSDF 234 Query: 290 LFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLD 349 + +D R NLE++ L SL + I+ T GGRL + + PL D+ ++ RLD Sbjct: 235 IALDPVTRRNLELVEPLF-EHGTSLFQLINDCQTAMGGRLLSRTLMQPLRDTKLLDARLD 293 Query: 350 SINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKD----------IAVIRDGIR 399 + + +P++ +LK D+ R LSR+ +G P+D I +R I+ Sbjct: 294 ATKSLVDG-YHESPVRLVLKEIGDIERVLSRVALGSARPRDLVQLRQACAQIPYLRHAIQ 352 Query: 400 SGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADA 459 I L L EEL L + L S + + P RDG + +G D Sbjct: 353 PVIQSKQSALITQLNEELGDF--------HGLHQRLMSAIVEHPPVLLRDGNVIAEGFDH 404 Query: 460 SLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLES 519 LDE R +RD + + + L+++ + T I LKI +N GY+IE+T + A ++ Sbjct: 405 ELDELRKIRDHAGQYLIDLEIQERQNTGISTLKIGYNRVSGYYIELTRAQAG------QA 458 Query: 520 KDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNA 579 D +I RQT+ N R+ T EL E+++ ++ + AL E FEIL + + L Sbjct: 459 PDHYIRRQTLKNAERYITPELKTFEDKVLSSESRALAREKMLFEILLDELRADIGHLQMM 518 Query: 580 SQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDC 639 S IA ID+ A A+ +N+ RP + GRHP+VE K F ND Sbjct: 519 SSAIAQIDLLANFAHQARLRNWSRPEYSPEIGVKIIAGRHPVVEALNK----ATFTPNDT 574 Query: 640 DLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSR 699 L D N ++ ++TGPNMGGKSTF+RQ ALI ++A GSYVPA A +G +D++F+R Sbjct: 575 TL----DFNH-RMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPAQSAVLGPIDRIFTR 629 Query: 700 VGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLH 759 +GSAD+L++G+STFMVEM ET+ IL+ ATNQS V++DE+GRGT+T DGLS+AWA + L Sbjct: 630 IGSADDLSTGKSTFMVEMTETSQILHHATNQSLVLMDEVGRGTSTYDGLSLAWACVLDLT 689 Query: 760 ETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVG 819 + +C L ATH+ ELT+L+K N + + N +I LHKV G A S+G+QV Sbjct: 690 KRIKCLCLFATHYFELTELAKE-TAIDNYHVTAKELNGNLILLHKVQHGPASQSHGLQVA 748 Query: 820 KLAGLPNTVISRAYDILKTFEKLYHHNQKDMR------LYYPEIQTKESKNNLSKNDKLF 873 KLAG+P +VI A + LK EK K ++ + PE++ E + K Sbjct: 749 KLAGIPASVIKEAQNRLKILEKQQLQKPKVVQNDLFAAIETPELEIMERVVEIEKPSAAL 808 Query: 874 VEKIKCLNLDEMSPLTALKTLYAVK 898 E +K +++D +SP AL+ LYA+K Sbjct: 809 -ELLKSIDVDNLSPREALQQLYALK 832 >gi|32731695|gb|AAP87090.1| DNA mismatch repair protein MutS [Staphylococcus aureus] Length = 872 Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust. Identities = 317/924 (34%), Positives = 489/924 (52%), Gaps = 111/924 (12%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPMM+QY++IKS D L+F+R+GDFYE+F++DA ASR L ITLTKR I Sbjct: 1 MSNVTPMMQQYLKIKSEYQDCLLFFRLGDFYEMFYEDAKEASRVLEITLTKRDAKKENPI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A+ YI L+ G+++AICEQ+E P + K +VRR VVR+VTPGT+ E Sbjct: 61 PMCGVPYHSADSYIDTLVNNGYKVAICEQMEDP-----KQTKGMVRREVVRIVTPGTVME 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD-RLISDIMRIDPREIIFS 200 + +NY+++ + E A+++ D+STG K++ N + L+++I I+P E++ + Sbjct: 116 QGGVDDKQNNYILSFVMNQPEIALSYCDVSTGELKVTHFNDEATLLNEITTINPNEVVIN 175 Query: 201 E-------------------KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYY 241 + +E +E S+ +T + + D+ I ++ D Sbjct: 176 DNISDNLKRQINMVTETITVRETLSSEIYSVNQTEHKLMYQATQLLLDY-IHHTQKRD-- 232 Query: 242 NITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLE 301 S +E AAI Y+K +D A+ NLE Sbjct: 233 ----------LSHIEDVVQYAAIDYMK-----------------------MDFYAKRNLE 259 Query: 302 ILRTLS-GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL 360 + ++ S++ +LL +D + T G R + I PL +I RLD ++ F + I Sbjct: 260 LTESIRLKSKKGTLLWLMDETKTPMGARRLKQWIDRPLISKEQIEARLDIVDEFSAHFIE 319 Query: 361 INPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGA 420 + ++ L D+ R + R+ G +D+ ++ I NI L N + + Sbjct: 320 RDTLRTYLNQVYDIERLVGRVSYGNVNARDLIQLKHSISEIPNIKALL--NSMNQNTLVQ 377 Query: 421 VEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 V +L+ L L+ L L ++ P +DGG + G + LDE K +A LQ Sbjct: 378 VNQLEPLDDLLD-ILEQSLVEEPPISVKDGGLFKVGFNTQLDEYLEASKNGKTWLAELQA 436 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 K + T IK+LKI N GYFIE+T ++ L+ S+ ++ +QT+SN RF T EL Sbjct: 437 KERQRTGIKSLKISFNKVFGYFIEITRAN---LQNFEPSEFGYMRKQTLSNAERFITDEL 493 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 + E+ I A + A+ +E + F L + + +E L +++I+ +D + A +A++ N Sbjct: 494 KEKEDIILGAEDKAIELEYQLFVQLREEVKKYTERLQQQAKIISELDCLQSFAEIAQKYN 553 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 Y RP + + + RHP+VE+ + ++ N+C L N ++L+TGPNM Sbjct: 554 YTRPSFSENKTLELVESRHPVVERVM---DYNDYVPNNCRLD-----NETFIYLITGPNM 605 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GKST++RQ A+I IMAQMG+YVP A + I D++F+R+G+AD+L SG+STFMVEM+E Sbjct: 606 SGKSTYMRQVAIISIMAQMGAYVPCKEAVLPIFDQIFTRIGAADDLVSGKSTFMVEMLEA 665 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 L AT S +I DEIGRGT+T DGL++A A IEY+ E + + L +TH+HELT L + Sbjct: 666 QKALTYATEDSLIIFDEIGRGTSTYDGLALAQAMIEYVAEPSHAKTLFSTHYHELTTLDQ 725 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 +L N + ++ +IFLHKV G D SYGIQV KLA LP VISRA IL FE Sbjct: 726 ALPSLKNVHVAANEYKGELIFLHKVKDGAVDDSYGIQVAKLADLPEKVISRAQVILSEFE 785 Query: 841 ------------KLYHH----NQKDMRLYYPEIQTKESKNNLSKND------KLF----- 873 K+ + NQ+++ L +E+ + LS+ D LF Sbjct: 786 ASAGKKSSISNLKMVENEPEINQENLNL-----SVEETTDTLSQKDFEQASFDLFENDQE 840 Query: 874 --VE-KIKCLNLDEMSPLTALKTL 894 +E +IK LNL M+P+ AL L Sbjct: 841 SEIELQIKNLNLSNMTPIEALVKL 864 >gi|124485989|ref|YP_001030605.1| DNA mismatch repair protein MutS [Methanocorpusculum labreanum Z] gi|124363530|gb|ABN07338.1| DNA mismatch repair protein MutS [Methanocorpusculum labreanum Z] Length = 864 Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust. Identities = 322/898 (35%), Positives = 493/898 (54%), Gaps = 55/898 (6%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL-GKDI 81 K TP M Q K PD ++F RMGDFYE FF+DA + +R L I T R K G I Sbjct: 5 KKLTPAMEQVKTFKEKYPDCILFMRMGDFYETFFEDAEICARELDIVQTSRSKDPEGNPI 64 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 P+ G+P H + Y+ ++I+ G+++A+CEQ+E P AK +V+R+VVR+VTPGT + Sbjct: 65 PLAGIPYHAVDLYLPRMIRKGYKVAVCEQVEDPKLAK-----GVVKRDVVRVVTPGTAID 119 Query: 142 DQLLSPTDSNYLMAVAR--IRTEWAIAWIDISTGIFKIST----SNHDRLISDIMRIDPR 195 ++ + YLMA+ +T +A++DISTG F + L ++I + +P Sbjct: 120 ADVIPGPTARYLMALCSDAKKTVMGLAFLDISTGEFFVREIPFEPGFSALATEIEQYNPL 179 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQV 255 EI+ + +S L T + + +F D + + + + ++++D F S Sbjct: 180 EILVPQG-ISADLISFLASTCKVLTPGRSGLFVDGT---AELTAAFCVSSLDGFDVSSAE 235 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR-EQSL 314 AAAAA+ Y K+TQ + P I R+ + +D+ NLEIL L G R + +L Sbjct: 236 CINAAAAALRYAKETQKTSLPHIRGFSRKYANDAMILDAITLRNLEILNPLRGDRNDTTL 295 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 ++ + T G R+ I PLT KIN RLD++ FF + P+L++ + IL D+ Sbjct: 296 FGFLNRTKTPMGSRVLRSTITRPLTSPEKINHRLDAVGFFTRRPVLLSGTRTILSRFTDI 355 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGA----VEKLKKLPQ- 429 R R+ G P+D+ +L +L EL GA ++L+++P Sbjct: 356 ERIAGRIAYGNASPRDLLA---------LASSLAAVPELTAELCGAEGLLKDELEQIPSF 406 Query: 430 -SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 + + S + D+ P ++GG +R+G + LD+ R++ + IA LQ E T I Sbjct: 407 DGVADLILSAIVDEPPLVYKNGGVIREGYSSDLDQIRNIVTNGRDWIAELQQTERERTGI 466 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 ++LKI +NN GY+IE+T ++ ++ D + +QT +N RFT L + E + Sbjct: 467 RSLKIAYNNVFGYYIEITKANLHLVP------DTYERKQTTANGERFTIPALREREAVMA 520 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 A + L +E+ FE L + E +L AS+ I ID+ A A L+ NY RP + Sbjct: 521 QADDRVLALEISLFESLLTHLSEFVPALQQASRSIGTIDMIAAFADLSLSGNYVRPELVP 580 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 T +++DGRHPIVE T+ ++ ND ++S + + +LTG NM GKST++R Sbjct: 581 GTELLIRDGRHPIVENTVPGG----YVPNDTEMSSIGQQ----ILILTGANMAGKSTYMR 632 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 ALI IMAQ G +VPAS+A IGIVD++F+RVG++D+LA G+STFMVEM+E A+ILN AT Sbjct: 633 SVALICIMAQTGCFVPASFARIGIVDRVFTRVGASDDLAGGQSTFMVEMLELANILNNAT 692 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC--RGLLATHFHELTDLSKSLKRFH 786 +QS ++LDEIGRGT+T+DG +IA A +EYLH R L ATHFH+L + L+R Sbjct: 693 DQSLILLDEIGRGTSTVDGYAIARAVLEYLHGKGGAGPRTLFATHFHQLIGMESELRRVR 752 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN 846 N V + I FL K+IPG D SYGI V K+AG+P V+ RA D+L+ E L Sbjct: 753 NYHFAVKEDQHDITFLRKLIPGATDRSYGIHVAKIAGVPKKVLVRASDLLR--EALTQDA 810 Query: 847 QKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTLEK 904 YY ++ +++ S + E+I+ + + M+P+ AL + +KA LEK Sbjct: 811 SSGGTKYYTQMLLTDAEPAPSAVE----ERIRDADPNMMTPMQALMFINELKAL-LEK 863 >gi|260665334|ref|ZP_05866182.1| DNA mismatch repair protein MutS [Lactobacillus jensenii SJ-7A-US] gi|260560838|gb|EEX26814.1| DNA mismatch repair protein MutS [Lactobacillus jensenii SJ-7A-US] Length = 854 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 300/883 (33%), Positives = 479/883 (54%), Gaps = 47/883 (5%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY +IKS PD+ +FYR+GDFYELF DDA+ ++ L +TLT R IPM GVP Sbjct: 1 MMKQYYDIKSQYPDAFLFYRVGDFYELFEDDAVKGAQILELTLTHRSNKTENPIPMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 + Y+ L++ G+++A+CEQ+E P +AK +V+R +++LVTPGT+ + Sbjct: 61 HQAVDSYVNTLVEKGYKVALCEQLEDPKQAK-----GMVKRGIIQLVTPGTMMNEGPNGA 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKELSH 206 +SNYL +V ++ + +A+ D+STG IF + ++++++ + +E++F E LS Sbjct: 116 KESNYLTSVFSTKSGFGLAYSDLSTGEIFTTHLKSFADVLNELLSLRTKEVVF-EGSLSD 174 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISY 266 ++ L ++ N+ V+ P E Y I + +Q EK A ++Y Sbjct: 175 SQKDVLKKS--NITVSTP-----IQDQEKHAEVSYAIQKLS-----NQAEKDATKQLVTY 222 Query: 267 IKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSITGA 325 + TQ + + + ++ L + ++NLE++ + +G + SL +D + T Sbjct: 223 LLVTQKRSLAHLQIAKSYEVSQYLQMSHVVQNNLELVASAKTGKKMGSLFWLLDKTNTAM 282 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 GGRL + +A PL ++I R + + N + ++ LK D+ R R+ G Sbjct: 283 GGRLLKQWLARPLLSISEIEKRQKIVQAMLDNYFIREAVKDALKGVYDLERLTGRIAFGS 342 Query: 386 GEPKDIAVIRDGIRSGINILN-LFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLP 444 +++ + + + I + LF D E+L +++ L + L K + + ++ P Sbjct: 343 ANARELLQLSRSLDAIPQIQSALFESGD--EDLANFADQIIDLSE-LAKKIKDTIVENPP 399 Query: 445 TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIE 504 DGG +R+G + LD R + K +A LQ + T I+NLKI +N GYFI+ Sbjct: 400 ILTTDGGLIREGINEQLDRYRDAMNNGKTWLAQLQAQERTATGIENLKIGYNKVFGYFIQ 459 Query: 505 VTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEI 564 V+ + + + + R+I +QT++ R+ T EL + EN I A N + +E + F Sbjct: 460 VSKGNIAKV-----PEGRYIRKQTLTGSERYITPELKEHENLILEAENKSTDLEYQIFSD 514 Query: 565 LSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI-VKDGRHPIVE 623 L I L IA +D + A +A+E NYCRP + I V GRHP+VE Sbjct: 515 LREYIKTFIPKLQELGNTIASLDALTSFATVAEENNYCRPSFHQDSQEIKVIAGRHPVVE 574 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 K L S +I ND ++ + ++L+TGPNM GKST++RQ ALI +MAQ+GS+V Sbjct: 575 KVLADGS---YIPNDIQMA-----DDTSVFLITGPNMSGKSTYMRQMALIAVMAQVGSFV 626 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA+ A + I D++F+R+G+AD+L SG+STFMVEM E L AT +S V+ DEIGRGTA Sbjct: 627 PATEASLPIFDQIFTRIGAADDLISGQSTFMVEMSEANEALQNATKRSLVLFDEIGRGTA 686 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DG+++A A ++YLH+ + L ATH+HELTD+ K+L N + + N +IFLH Sbjct: 687 TYDGMALAGAIVKYLHDKVGAKTLFATHYHELTDMEKTLDHLKNIHVGATQENGKLIFLH 746 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN------QKDMRLYYPEI 857 K++PG AD SYGI V +LAGLPN V+ A +LK E + Q D+ E Sbjct: 747 KILPGPADQSYGIHVAQLAGLPNKVLREASKMLKRLEAQGANGLEPASLQLDLFSDSSET 806 Query: 858 QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAW 900 + S +S +K +E I L L + +PL ++ V +W Sbjct: 807 EETTSDEAISDTEKQVIEDINNLYLADKTPLEVMQL---VASW 846 >gi|268611650|ref|ZP_06145377.1| DNA mismatch repair protein MutS [Ruminococcus flavefaciens FD-1] Length = 871 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 298/843 (35%), Positives = 469/843 (55%), Gaps = 49/843 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMMRQY+E+K D ++F+R+GDFYE+FFDDA+ S+ L +TLT R L + PMCG Sbjct: 9 SPMMRQYLEMKDKYEDCVLFFRLGDFYEMFFDDAVRVSKALELTLTGRDCGLEERAPMCG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A+ YI++LI +G ++A+CEQ+ P E+K +V R+V+R+VTPGTLT+ +L Sbjct: 69 VPYHAADMYIKRLIDLGFKVAVCEQLTDPAESK-----GIVIRDVIRVVTPGTLTDSSML 123 Query: 146 SPTDSNYLMAVA--RIRTEWAIAWIDISTGIFKISTSNHDRL----ISDIMRIDPREIIF 199 +NY+ ++ A+A DISTG +ST + I+++ R P E+IF Sbjct: 124 DDGRNNYICSIYYDEENKSCAVASADISTGEAALSTFEGKDMEAGVINELSRCRPAEVIF 183 Query: 200 SEKELSHAEYKSLFETLGNVAVA-QPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 ++ LS + AV + F S + + + + ++ G + + Sbjct: 184 TDSFLSLKNVADFIKIRLECAVTLRDKECFMPSERRTAVMQVFGVKSMAELGITDDGADC 243 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDI---QSTLFIDSAARSNLEILRTL-SGSREQS 313 A YI TQ K T+ + +I + + +D AR NLE+ TL + ++ S Sbjct: 244 CAVCGLFDYINDTQ---KTTVSRFTKIEILGGDAFMGLDLNARRNLELTETLRNKEKKGS 300 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T G RL I PL +I RLD+++ +N + + + +L D Sbjct: 301 LLWVLDSTKTSMGRRLLKNWIEQPLKSPARIIERLDAVDALYKNSVTLADLGDLLDRVYD 360 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAV------EKLKKL 427 + R ++++ P+D+ + S + +K +L + L G+ E++ L Sbjct: 361 LERLMTKVMYKSANPRDLKSL-----SATALQLPLIKQELSK-LSGSKLLARCNEEIDTL 414 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 + + K + + + D+ P +DGG +R+G + LDE R + K +I ++ + E T Sbjct: 415 -EEMVKLVENAIMDEPPVSVKDGGVIREGFNQELDELRHIMGHGKEMIDDIEQREKEATG 473 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 IKNLKI +N GY++EVT S ++ D +I +QT++N RF T EL + EN I Sbjct: 474 IKNLKIGYNRVFGYYLEVTRSYYDLIP------DGWIRKQTLANAERFITEELKNAENAI 527 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 A + AL +E + F + + + + ES+ + +A +D+ + A +A Y +P I Sbjct: 528 LGAKDKALALEADIFAEVRDFLATKLESVQKTASAVATVDVLCSFADVALRNQYVKPDIA 587 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 +K GRHP+VE L ++ F+ ND + D + ++ ++TGPNM GKST++ Sbjct: 588 IDGAIDIKAGRHPVVELMLTEEM---FVPNDIYI----DNKADRMSIITGPNMSGKSTYM 640 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ ALIV+MAQ+GS+VPA A I +VDK+F+RVG++D+L +G+STFMVEM E + IL A Sbjct: 641 RQTALIVLMAQIGSFVPADSAKISVVDKIFTRVGASDDLTAGQSTFMVEMSEVSDILKNA 700 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRF 785 T S VILDE+GRGT+T DG+SIA A E++ + + C+ L ATH+HEL L L+ Sbjct: 701 TPDSLVILDEVGRGTSTFDGVSIARAVAEHIVNSKKLGCKTLFATHYHELIGLENELEGV 760 Query: 786 HNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH 845 N ++ V+ I FL K++ G D SYGI V KLAGLP V+SRA ++L E H Sbjct: 761 KNYSIAVNKHGGNIRFLRKIVRGGVDESYGIDVAKLAGLPAKVVSRARELLAEMEA-AHA 819 Query: 846 NQK 848 ++K Sbjct: 820 SEK 822 >gi|269213922|ref|ZP_05983147.2| DNA mismatch repair protein MutS [Neisseria cinerea ATCC 14685] gi|269145133|gb|EEZ71551.1| DNA mismatch repair protein MutS [Neisseria cinerea ATCC 14685] Length = 875 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 316/905 (34%), Positives = 474/905 (52%), Gaps = 55/905 (6%) Query: 11 LYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITL 70 L+ + I L + + +PMM+QY+ IKS + D LVFYRMGDFYELF DDA+ A++ L ITL Sbjct: 2 LFCKFISLIMSKPTVSPMMQQYLAIKSQHADKLVFYRMGDFYELFLDDAVEAAKLLDITL 61 Query: 71 TKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNV 130 T RG+ G I M GVP H A Y+ +L+K+G +A+CEQ+ + K V R V Sbjct: 62 TTRGQMDGVPIKMAGVPFHAAEQYLARLVKMGKSVAVCEQV-----GEVGAGKGPVERKV 116 Query: 131 VRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIM 190 VR+VTPGTLT+ L ++N + AV + AIAW + +G FK + D+L ++ Sbjct: 117 VRIVTPGTLTDAAFLEDKETNRIAAVNADKKHIAIAWASLQSGEFKTKLTTADKLADELA 176 Query: 191 RIDPREIIFSEKELSHAEYKSL---FETLGNVAVAQPNVFFDHSISESRIADYYNITTVD 247 R+ EI+ E KSL F+T + F + +Y+ + Sbjct: 177 RLQAAEILLPEG-------KSLPDGFQTTSANITRLNSWQFAADAGAKLLTEYFGCQDLH 229 Query: 248 TFG---SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILR 304 FG + AA A ++YI+ TQ + + E + +D+A R NLEI + Sbjct: 230 GFGLDGKEHEAAIGAAGALLNYIRLTQNLMPQHLDGISLETDSQYIGMDAATRRNLEITQ 289 Query: 305 TLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPI 364 TLSG + +L +D T G RL A + PL I R +++ + Sbjct: 290 TLSGKKSPTLFSILDGCATHMGSRLLALWLHHPLRSRAHIRARQEAVAALGSQ---YEAL 346 Query: 365 QKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKL 424 Q LK+ D+ R +R+ +G P+D+A +RD + + I +L E +E L Sbjct: 347 QGRLKNIADIERIAARIAVGNARPRDLAALRDSLFALSEI-------ELSAEGSSLLETL 399 Query: 425 KKL-PQSL--EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLK 481 K + P++L +TL + + + + +DGG + G A +DE R +++ + L+ + Sbjct: 400 KAVFPETLPVAETLKAAVMPEPAVWLKDGGVINQGYCAEIDELRHIQNHGDEFLLDLEAR 459 Query: 482 YAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELI 541 E T + LK++ N G++IE++ A D + RQT+ N RF T EL Sbjct: 460 ERERTGLSTLKVEFNRVHGFYIELSKVQAEQAPAD------YQRRQTLKNAERFITPELK 513 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 E+++ A AL +E FE L I L A++ A +D+ A A E+ + Sbjct: 514 TFEDKVLTAQEQALALEKRLFEALLKDIQTTLPQLQKAAKAAAALDVLSTFAATAAERGF 573 Query: 602 CRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 P + +++GRHPIVE+ ++ F AN L + +L LLTGPNMG Sbjct: 574 VCPEFADYPVINIENGRHPIVEQQVRH-----FTANHTRLD-----HKHRLMLLTGPNMG 623 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKST++RQ A IV+MA GS+VPA A IG +D++F+R+G++D+LAS RSTFMVEM ETA Sbjct: 624 GKSTYMRQVAHIVLMAHTGSFVPADAAQIGPIDQIFTRIGASDDLASNRSTFMVEMSETA 683 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS 781 IL+ AT+QS V++DE+GRGT+T DGL++A A E+L + N+ L ATH+ ELT L ++ Sbjct: 684 YILHHATDQSLVLMDEVGRGTSTFDGLALAHAIAEHLLQKNKSFSLFATHYFELTKLPEA 743 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 N L + + I+FLH + PG A SYGI V KLAGLPN + A L E Sbjct: 744 HATAVNMHLSALEQGQDIVFLHHIEPGPASKSYGIAVAKLAGLPNRALKAAQKHLSELET 803 Query: 842 LYHHNQKDMRLY--YPEIQTKESKNNLSKNDK------LFVEKIKCLNLDEMSPLTALKT 893 + Q + ++ P Q + N S+ K + + + LN D ++PL AL Sbjct: 804 QAANAQPQLDIFNLIPSEQDESDDNRPSEKYKDAAPEGVLTKALNLLNPDSLTPLEALSE 863 Query: 894 LYAVK 898 LY +K Sbjct: 864 LYRLK 868 >gi|56751860|ref|YP_172561.1| DNA mismatch repair protein MutS [Synechococcus elongatus PCC 6301] gi|81676833|sp|Q5N0X9|MUTS_SYNP6 RecName: Full=DNA mismatch repair protein mutS gi|56686819|dbj|BAD80041.1| DNA mismatch repair protein MutS [Synechococcus elongatus PCC 6301] Length = 882 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 297/835 (35%), Positives = 464/835 (55%), Gaps = 42/835 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TPMM+ Y E+K + ++ YRMGDF+E FF DA++ +R L + LT + GK +G+ +PM Sbjct: 29 TPMMQHYAEVKDQHLQQILLYRMGDFFECFFQDAIVVARELELVLTSKEAGKEVGR-VPM 87 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G+P H + Y +L++ G+ IAIC+Q+E+ +A+ LVRR + R++TPGT+ E+ Sbjct: 88 AGIPYHALDRYASQLVEKGYAIAICDQVETAAQAQG----PLVRREITRIITPGTILEEG 143 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIF--S 200 +L +N+L AV W +A+ D STG + S S + L ++ R+ P E++F + Sbjct: 144 MLQARRNNFLAAVVIAGEHWGLAYADSSTGDYWTSQSTGLEGLTQELYRLQPSEVLFPSA 203 Query: 201 EKELS------HAEYKSLFETLGN---VAVAQPNVFFDHSISESRIADYYNITTVDTFGS 251 +L+ ++ + + + L + A+ P F H + R+ +++ + +++ G Sbjct: 204 APDLAGLLRPGQSKPQQIPDCLPDSFCYALRSPMPFELHE-ARQRLLEHFQLRSLEGCGC 262 Query: 252 FS-QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGS 309 + AA + Y+ +TQ + + P + L +D R NLEI +T GS Sbjct: 263 EQLPLAIRAAGGLLDYLGETQRESLAPLQKPRTYSLSEFLILDQQTRRNLEITQTQRDGS 322 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 SLL +D ++T GGRL + PL + I R +I Q+ L ++ +L+ Sbjct: 323 FHGSLLWALDRTMTSMGGRLLRRWLLQPLLNPEAIRNRQAAIQELCQDGRLRQDLRSLLQ 382 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 D+ R R G +D+ + + + + L + P + +L+++P Sbjct: 383 KIYDLERLSGRAGAGTANARDLLALAESLLRLPELAQLLSRAQSP-----LLAQLQQVPP 437 Query: 430 SLEK---TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 LE+ L L + P +GG +R G +LDE R + ++ IASL+ T Sbjct: 438 ELEQLGDRLQQHLVESPPLQLTEGGLIRSGVAIALDELRQQVESDRQWIASLEASERTAT 497 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 I +LK+ ++ GYFI ++ S A + D +I RQT++N RF T +L + E+R Sbjct: 498 GINSLKVGYSKTFGYFISLSRSKAD------QVPDHYIRRQTLTNEERFITPDLKERESR 551 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 I NA +E + F L + + E++ + +A D+ ALA +A QNYC P I Sbjct: 552 ILNAQTDLNQLEYDLFVGLRSEVSHHVETIRAIATAVAAADVLAALAEVAVYQNYCCPEI 611 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 + ++DGRHP+VE+ L S ++ N C L +D+ L +LTGPN GKS + Sbjct: 612 RDDRQLAIQDGRHPVVEQALP---SGFYVPNSCGLG--SDRGP-DLIVLTGPNASGKSCY 665 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 LRQ LI ++AQ+GS+VPA A +GI D++F+RVG+ D+LA+G+STFMVEM ETA+ILN Sbjct: 666 LRQVGLIQLLAQIGSFVPAKNAQVGICDRIFTRVGAVDDLATGQSTFMVEMDETANILNH 725 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT +S V+LDEIGRGTAT DGLSIAWA EYL + R + ATH+HEL +LS LK Sbjct: 726 ATARSLVLLDEIGRGTATFDGLSIAWAVAEYLAREIQARTIFATHYHELNELSGLLKNVA 785 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 N + V + + I+FLH+V PG AD SYGI+ +LAGLP+ VI RA +++ EK Sbjct: 786 NFQVTVKELPDRIVFLHQVQPGGADRSYGIEAARLAGLPSEVIDRAREVMSRIEK 840 >gi|308069371|ref|YP_003870976.1| DNA mismatch repair protein mutS [Paenibacillus polymyxa E681] gi|305858650|gb|ADM70438.1| DNA mismatch repair protein mutS [Paenibacillus polymyxa E681] Length = 981 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 289/828 (34%), Positives = 468/828 (56%), Gaps = 49/828 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM+ QY+ IK D+ +F+R+GDFYE+FFDDA+LAS+ L ITLT R + IPMCG Sbjct: 47 TPMIEQYLSIKEQAKDAFLFFRLGDFYEMFFDDAILASKELEITLTGREGGATEKIPMCG 106 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A +YIQ+LI+ G+++AICEQ+E + K +VRR++VR+VTPGT+ E ++L Sbjct: 107 VPYHSAENYIQRLIEKGYKVAICEQME-----EASATKGMVRRDIVRVVTPGTVMEGKVL 161 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST--SNHDRLISDIMRIDPREIIFSEKE 203 +NY++ V A+A D+STG +++ + + L+ +I +P E++ Sbjct: 162 GDKSNNYMVCVTETDGMLALAACDLSTGELYVTSVPDSKEWLLDEINIYEPSEMLGDGHL 221 Query: 204 LSHAEYKSLFETLGNVAVAQPNVF--FDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 L F T V + V+ +D S + + D + T+ ++ + + Sbjct: 222 LD-------FVTSRMSPVGRRVVYTAWDKS-KDDLVRDQFG---EPTWARLTEERRRCVS 270 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 ISY+ +TQ + + + + +D R NLE++ T+ S++ SLL +D Sbjct: 271 RLISYLNETQKRSLGQLTQISVYEPNHFMILDPFTRRNLELVETVRERSKKGSLLWLLDR 330 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G RL I PL S+ I RL++++ I ++ LK D+ R + R Sbjct: 331 TETSMGARLLRRWIDKPLLSSSLIEERLEAVDKLYHQFIFREDVRAQLKEIYDLERLVGR 390 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEK-LKKLPQSLEKT----- 434 + G +D+ ++ L+L L E + K L+++ Q+L+ Sbjct: 391 IAFGSANARDLIALK---------LSLARIPSLRELCAESPSKTLRRIAQTLDSCTDLCA 441 Query: 435 -LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + ++D+ P RDGG +++G LDE R KR IA L+ K T I++LKI Sbjct: 442 LIEEAVADEPPISVRDGGLIKEGYHQRLDELREASVNGKRWIAELEAKERAATGIRSLKI 501 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GY+IEVT S+ + L + R+ +QT++N R+ T EL + E+ I A + Sbjct: 502 GYNKVFGYYIEVTKSNLASL-----PEGRYERKQTLANAERYITPELKEKESLILEAEDK 556 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + +E F L + + + L ++ +A ID+ +LA ++ E+ + +P + +F+ Sbjct: 557 MVDLEYTLFSELRSKLNAEIPRLQKLAEQVAEIDVYQSLASVSSERGFVKPELTTGYDFV 616 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 V+ GRHP+VE +K FIAN L ++ + L+TGPNM GKST++RQ ALI Sbjct: 617 VEQGRHPVVEAVMKDGG---FIANSTVL----EETDAHILLITGPNMAGKSTYMRQVALI 669 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 IMAQ+G +VPA+ A + ++D++F+R+G+AD+L G+STFMVEM + + ++AT +S + Sbjct: 670 AIMAQIGCFVPAARAKVPMLDRIFTRIGAADDLIGGQSTFMVEMADIQVMTDKATPRSLI 729 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 I+DE+GRGT+T +G++IA A IE++H+T C+ L++THFHEL L + L N ++ V Sbjct: 730 IIDELGRGTSTSEGMAIAQAVIEFVHDTIGCKALVSTHFHELAHLEQGLPSLRNYSMAVQ 789 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 +S + + FL K+IPG A SYGI +LAGLPN +I RA +L FE+ Sbjct: 790 ESGDKVNFLRKLIPGAASSSYGIYCARLAGLPNNIIERANGLLNGFEQ 837 >gi|81301056|ref|YP_401264.1| DNA mismatch repair protein MutS [Synechococcus elongatus PCC 7942] gi|123556360|sp|Q31KZ2|MUTS_SYNE7 RecName: Full=DNA mismatch repair protein mutS gi|81169937|gb|ABB58277.1| DNA mismatch repair protein MutS [Synechococcus elongatus PCC 7942] Length = 882 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 297/835 (35%), Positives = 464/835 (55%), Gaps = 42/835 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TPMM+ Y E+K + ++ YRMGDF+E FF DA++ +R L + LT + GK +G+ +PM Sbjct: 29 TPMMQHYAEVKDQHLQQILLYRMGDFFECFFQDAIVVARELELVLTSKEAGKEVGR-VPM 87 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G+P H + Y +L++ G+ IAIC+Q+E+ +A+ LVRR + R++TPGT+ E+ Sbjct: 88 AGIPYHALDRYASQLVEKGYAIAICDQVETAAQAQG----PLVRREITRIITPGTILEEG 143 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIF--S 200 +L +N+L AV W +A+ D STG + S S + L ++ R+ P E++F + Sbjct: 144 MLQARRNNFLAAVVIAGEHWGLAYADSSTGDYWTSQSTGLEGLTQELYRLQPSEVLFPSA 203 Query: 201 EKELS------HAEYKSLFETLGN---VAVAQPNVFFDHSISESRIADYYNITTVDTFGS 251 +L+ ++ + + + L + A+ P F H + R+ +++ + +++ G Sbjct: 204 APDLAGLLRPGQSKPQQIPDCLPDSFCYALRSPMPFELHE-ARQRLLEHFQLRSLEGCGC 262 Query: 252 FS-QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGS 309 + AA + Y+ +TQ + + P + L +D R NLEI +T GS Sbjct: 263 EQLPLAIRAAGGLLDYLGETQRESLAPLQKPRTYSLSEFLILDQQTRRNLEITQTQRDGS 322 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 SLL +D ++T GGRL + PL + I R +I Q+ L ++ +L+ Sbjct: 323 FHGSLLWALDRTMTSMGGRLLRRWLLQPLLNPEAIRNRQAAIQELCQDGRLRQDLRSLLQ 382 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 D+ R R G +D+ + + + + L + P + +L+++P Sbjct: 383 KIYDLERLSGRAGAGTANARDLLALAESLLRLPELAQLLSRAQSP-----LLAQLQQVPP 437 Query: 430 SLEK---TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 LE+ L L + P +GG +R G +LDE R + ++ IASL+ T Sbjct: 438 ELEQLGDRLQQHLVESPPLQLTEGGLIRSGVAIALDELRQQVESDRQWIASLEASERTAT 497 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 I +LK+ ++ GYFI ++ S A + D +I RQT++N RF T +L + E+R Sbjct: 498 GINSLKVGYSKTFGYFISLSRSKAD------QVPDHYIRRQTLTNEERFITPDLKERESR 551 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 I NA +E + F L + + E++ + +A D+ ALA +A QNYC P I Sbjct: 552 ILNAQTDLNQLEYDLFVGLRSEVSHHVETIRAIATAVAAADVLAALAEVAVYQNYCCPEI 611 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 + ++DGRHP+VE+ L S ++ N C L +D+ L +LTGPN GKS + Sbjct: 612 RDDRQLAIQDGRHPVVEQALP---SGFYVPNSCGLG--SDRGP-DLIVLTGPNASGKSCY 665 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 LRQ LI ++AQ+GS+VPA A +GI D++F+RVG+ D+LA+G+STFMVEM ETA+ILN Sbjct: 666 LRQVGLIQLLAQIGSFVPAKNAQVGICDRIFTRVGAVDDLATGQSTFMVEMNETANILNH 725 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT +S V+LDEIGRGTAT DGLSIAWA EYL + R + ATH+HEL +LS LK Sbjct: 726 ATARSLVLLDEIGRGTATFDGLSIAWAVAEYLAREIQARTIFATHYHELNELSGLLKNVA 785 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 N + V + + I+FLH+V PG AD SYGI+ +LAGLP+ VI RA +++ EK Sbjct: 786 NFQVTVKELPDRIVFLHQVQPGGADRSYGIEAARLAGLPSEVIDRAREVMSRIEK 840 >gi|93117345|gb|ABE99590.1| MutS [Neisseria meningitidis] Length = 864 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 307/893 (34%), Positives = 475/893 (53%), Gaps = 62/893 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM+QY+ IK+ + D LVFYRMGDFYE+FFDDA+ A++ L ITLT RG+ G+ + M G Sbjct: 7 SPMMQQYLGIKAQHTDKLVFYRMGDFYEMFFDDAVEAAKLLDITLTTRGQVDGEPVKMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ +L+K+G +AICEQ+ + K V R VVR+VTPGTLT+ LL Sbjct: 67 VPFHAAEQYLARLVKLGKSVAICEQV-----GEVGAGKGPVERKVVRIVTPGTLTDSALL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 ++N ++AV+ + +AW + +G FK + D+L ++ R+ EI+ + Sbjct: 122 EDKETNRIVAVSPDKKYIGLAWASLQSGEFKTKLTTVDKLDDELARLQAAEILLPDS--- 178 Query: 206 HAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQ---VEKTAAA 261 K+ + V + N + F E + +Y+ + FG + V AA Sbjct: 179 ----KNAPQLQTASGVTRLNAWQFAADAGEKLLTEYFGCQDLRGFGLDGKEHAVAIGAAG 234 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 A ++YI+ TQ + + E + +D+A R NLEI +TLSG + +L+ T+D Sbjct: 235 ALLNYIRLTQNLMPQHLDGLSLETDSQYIGMDAATRRNLEITQTLSGKKSPTLMSTLDLC 294 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G RL A + PL + I R +++ P+Q LK+ D+ R +R+ Sbjct: 295 ATHMGSRLLALWLHHPLRNRAHIRARQEAVAALESQ---YKPLQCRLKNIADIERIAARI 351 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL-PQSLE--KTLSSM 438 +G P+D+A +RD + I DL +E LK + P++L + L Sbjct: 352 AVGNARPRDLASLRDSLFELAQI-------DLSANGSSLLETLKAVFPENLSTAEQLRQA 404 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + + + +DG + G LDE R +++ + L+ K E T + LK++ N Sbjct: 405 ILPEPSVWLKDGNVINHGFHPELDELRRIQNHGDEFLLDLEAKERERTGLSTLKVEFNRV 464 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 G++IE + + A D + RQT+ N RF T EL E+++ A AL +E Sbjct: 465 HGFYIEWSKTQAEQAPAD------YQRRQTLKNAERFITPELKAFEDKVLTAQEQALALE 518 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F+ + + L A++ A +D+ + LAKE+N+ RP + +++GR Sbjct: 519 KQLFDGVLKNLQTALPQLQKAAKAAAALDVLSTFSALAKERNFVRPEFADYPAIHIENGR 578 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ ++ F AN +L + +L LLTGPNMGGKST++RQ ALIV++A Sbjct: 579 HPVVEQQVRH-----FTANHTNLD-----HKHRLMLLTGPNMGGKSTYMRQVALIVLLAH 628 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 G +VPA A IG +D++F+R+G++D+LAS RSTFMVEM ETA IL+ AT QS V++DE+ Sbjct: 629 TGCFVPADAATIGPIDQIFTRIGASDDLASNRSTFMVEMSETAYILHHATEQSLVLMDEV 688 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGL++A A E+L + N+ L ATH+ ELT L ++ N L + + Sbjct: 689 GRGTSTFDGLALAHAVAEHLLQKNKSFSLFATHYFELTYLPEAHAAAVNMHLSALEQGQD 748 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 I+FLH++ PG A SYGI V KLAGLP + A L E N+ + ++ Sbjct: 749 IVFLHQIQPGPAGKSYGIAVAKLAGLPVRALKSAQKHLNELENQAAANRPQLDIF----S 804 Query: 859 TKESKNNLSKNDKLFVEK-------------IKCLNLDEMSPLTALKTLYAVK 898 T S+ N FV+K ++ L+ D ++P AL LY +K Sbjct: 805 TMPSEKGDEPNVGNFVDKAEEKHFEGILAAALEKLDPDSLTPRKALSELYRLK 857 >gi|325859897|ref|ZP_08173027.1| DNA mismatch repair protein MutS [Prevotella denticola CRIS 18C-A] gi|325482823|gb|EGC85826.1| DNA mismatch repair protein MutS [Prevotella denticola CRIS 18C-A] Length = 887 Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust. Identities = 287/832 (34%), Positives = 462/832 (55%), Gaps = 34/832 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD-I 81 K TPMM+Q+ +K+ +P +L+ +R GDFYE + +DA+ +++ LGITLT+R D I Sbjct: 6 KGLTPMMKQFFSMKAQHPGALMLFRCGDFYETYGEDAVESAKILGITLTRRNNGGNCDSI 65 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKK--RGNKSL------VRRNVVRL 133 M G P H + Y+ KLI+ G R+AIC+Q+E P + ++ +G K L V+R + L Sbjct: 66 EMAGFPHHALDTYLPKLIRAGKRVAICDQLEDPKKKREAIKGKKGLSAMDKMVKRGITEL 125 Query: 134 VTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRID 193 VTPG D +L+ ++N+L AV + ++++DISTG F D + + Sbjct: 126 VTPGVALSDNVLNYKENNFLAAVHFGKGACGVSFLDISTGEFLTGEGTFDYVEKLLGNFQ 185 Query: 194 PREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS 253 P+E++F + +++ F T VF D + + ++ ++ + FG Sbjct: 186 PKEVLFDRAK--KQDFERYFGTRLCTFEMDDWVFTDQT-ARQKLLKHFGTKNLKGFGVDH 242 Query: 254 QVEKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 AA AI Y++ TQ + I R + + +D +LE++ ++ Sbjct: 243 LHNGVVAAGAILQYLEITQHTHINHITSLARIEEDKYVRMDRFTIRSLELIAPMN-EDGA 301 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 SLL ID ++T GGR+ + PL D+ IN RLD +++ + P I + Sbjct: 302 SLLDVIDNTVTPMGGRMLRRWMVFPLKDAKPINERLDVVDYLFREPDFRECIDEQFHRIG 361 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLPQS 430 D+ R +S++ +GR P+++ +++ + + + L+ K+ E L+ E+L L +S Sbjct: 362 DLERIISKVAVGRVSPREVVQLKNALMAIQPVKTACLYAKS---ETLKRIGEQLN-LCES 417 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L + + D P G + G D LDE RS+RD K+ + +Q K AE+T I + Sbjct: 418 LRDRIEKEIQPDPPQLAAKGNVIAPGYDRQLDELRSIRDNGKQYLLEIQEKEAEQTGITS 477 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LKI NN GY++EV ++ + +D +I +QT++ R+ T EL + E +I A Sbjct: 478 LKIGFNNVFGYYLEVRNTFKDKVPED------WIRKQTLAQAERYITPELKEYEEKILGA 531 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 L +E + F L + E + + +IA +D ++ ++++Q Y RP++D S Sbjct: 532 DEKILAMEGQLFMELIQDMQEFIPQIQINANLIAHLDCLLSFMKVSQQQRYVRPVVDGSE 591 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 +K GRHP++E L + ++ ND L D ++ ++TGPNM GKS LRQ Sbjct: 592 VLDIKQGRHPVIETQLP--IGEQYVPNDVLL----DTEHQQIMMITGPNMAGKSALLRQT 645 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALIV++AQ+G +VPA A IG+VDK+F+RVG++DN++ G STFMVEM E ++ILN T + Sbjct: 646 ALIVLLAQIGCFVPAERARIGMVDKIFTRVGASDNISLGESTFMVEMTEASNILNNVTPR 705 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNA 788 S V+ DE+GRGT+T DG+SIAWA +EYLHE R R L ATH+HEL ++ KS R N Sbjct: 706 SLVLFDELGRGTSTYDGISIAWAIVEYLHEHPRVQARTLFATHYHELNEMEKSFPRIRNF 765 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + V + + IIFL K+ PG ++HS+GI V ++AG+P +++ RA ILK E Sbjct: 766 NVSVKEVDGKIIFLRKLEPGGSEHSFGIHVAEIAGMPRSIVKRANVILKELE 817 >gi|238022953|ref|ZP_04603379.1| hypothetical protein GCWU000324_02875 [Kingella oralis ATCC 51147] gi|237865761|gb|EEP66899.1| hypothetical protein GCWU000324_02875 [Kingella oralis ATCC 51147] Length = 853 Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust. Identities = 299/887 (33%), Positives = 475/887 (53%), Gaps = 54/887 (6%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K +PMM+QY+ IK+ + D LVFYRMGDFYELFFDDA+ A++ L ITLT RG+ G+ I Sbjct: 3 KPLSPMMQQYLNIKAEHADKLVFYRMGDFYELFFDDAIEAAKLLDITLTTRGQISGEPIK 62 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H A Y+ KL+K+G +AICEQI P+ K +V R VVR++TPGTLT+ Sbjct: 63 MAGVPYHAAEQYLAKLVKLGKSVAICEQIGEPVAGK------VVERKVVRIITPGTLTDS 116 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK 202 LL N + A+A ++ + A+AW + +G FK + D+L ++ R+ E++ Sbjct: 117 ALLEDKQPNRIAALAVLKKQTALAWAALESGEFKAKIIHADQLADELARLQVAELLAPND 176 Query: 203 ELSHAEYKSLFETLGNVAVAQP-----NVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 F N+A N F + + + Y+ + +G + Sbjct: 177 ----------FRLPENIAAQTSITRLNNWQFAPDTAFTLLTQYFGSQDLSAYGMQPENHP 226 Query: 258 TAAAAA---ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSL 314 A AAA ++Y+K TQ P + E + +D+A R NLEI TLSG + +L Sbjct: 227 AAIAAAGALLNYLKITQSQLPPHLDALTLEHEHQYIALDAATRRNLEITTTLSGKKAPTL 286 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 T+D T G RL A+ + PL + I RLD++ + + + LK+ D+ Sbjct: 287 FSTLDNCATHMGSRLLAQWLHHPLRNRDHIQARLDAVAALLADNTSTE-LSGSLKTIADL 345 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFL-KNDLPEELRGAVEKLKKLPQSLEK 433 R +R+ +G P+D++ +RD + + + L ++ L + L + + + L++ Sbjct: 346 ERIAARIALGSARPRDLSALRDSL---LALATFRLPQSPLLQTLGDSFPATAAIAEHLQR 402 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L S + +DG + G A LDE R L + ++ + + T I +LK+ Sbjct: 403 ALLPEPS----VWLKDGNVINHGYHAELDELRHLHTHGSETLRQMEEQERQNTGIGSLKL 458 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 ++N G++IE++ + A + + RQT+ N RF T EL E++ A Sbjct: 459 EYNRVHGFYIELSKAQAE------HAPAHYQRRQTLKNAERFITPELKAFEDKYLAAQER 512 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 +L +E + +E L + ++ + +++ A +D+ + A A+ QNY RP + ++ Sbjct: 513 SLALEKQLYEELLRQLQKELPKIQRSARAAATLDVLNSFAHTARSQNYTRPQFTDHSSLH 572 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +++GRHP+VE+ ++ F N L+ S +L LLTGPNMGGKST++RQ ALI Sbjct: 573 IQNGRHPVVEQQVQH-----FTPNHTQLTP-----SRRLTLLTGPNMGGKSTYMRQVALI 622 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 ++A GSY+PA A IG +D++ +R+G++D+LA RSTFMVEM ETA IL+ AT QS V Sbjct: 623 ALLAHTGSYIPAQAATIGTIDQIHTRIGASDDLAGNRSTFMVEMSETAYILHHATAQSLV 682 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DE+GRGT+T DGL++A A E+L N+ L ATH+ ELT L ++ N L Sbjct: 683 LMDEVGRGTSTFDGLALAQAIAEHLISKNQSLTLFATHYFELTRLPENHPSAFNMHLSAL 742 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK--LYHHNQKDMR 851 + + I+FLH + G A+ SYGI V KLAG+P+ ++ A L E H Q DM Sbjct: 743 EQGQDIVFLHHIEAGPAEKSYGIAVAKLAGIPSRTLNTARKHLAALEAQTAQQHPQLDMF 802 Query: 852 LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 PE ++++ EK++ ++ D+++ AL +Y +K Sbjct: 803 APLPE---HNAEHDAKHTPNPLAEKLRHIHPDDLTARAALDLVYELK 846 >gi|310642433|ref|YP_003947191.1| DNA mismatch repair protein muts [Paenibacillus polymyxa SC2] gi|309247383|gb|ADO56950.1| DNA mismatch repair protein MutS [Paenibacillus polymyxa SC2] Length = 966 Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust. Identities = 286/835 (34%), Positives = 469/835 (56%), Gaps = 47/835 (5%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 L + TPM+ QY+ IK D+ +F+R+GDFYE+FFDDA+LAS+ L ITLT R Sbjct: 24 LGNGMSKYTPMIEQYLSIKEQAKDAFLFFRLGDFYEMFFDDAILASKELEITLTGREGGA 83 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 + IPMCGVP H+A +YIQ+LI+ G+++AICEQ+E + K +VRR++VR+VTPG Sbjct: 84 AEKIPMCGVPYHSAENYIQRLIEKGYKVAICEQME-----EASATKGMVRRDIVRVVTPG 138 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST--SNHDRLISDIMRIDPR 195 T+ E ++L +NY++ V A+A D+STG +++ + + L+ +I +P Sbjct: 139 TVMEGKVLGDKSNNYMVCVTETDGMLALAACDLSTGELYVTSVPDSKEWLLDEINIYEPS 198 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVF--FDHSISESRIADYYNITTVDTFGSFS 253 E++ L F T V + V+ +D S + + D + T + + Sbjct: 199 EMLGDGHLLD-------FVTSRMSPVGRRVVYTAWDKS-KDDLVRDQFGEAT---WARLT 247 Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQ 312 + + + ISY+ +TQ + + + + +D R NLE++ T+ S++ Sbjct: 248 EERRRCVSRLISYLNETQKRSLGQLTQISVYEPNHFMILDPFTRRNLELVETVRERSKKG 307 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 SLL +D + T G RL I PL S I RL++++ I ++ LK Sbjct: 308 SLLWLLDRTETSMGARLLRRWIDKPLLSSNLIEERLEAVDKLYHQFIFREDVRAQLKEIY 367 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE 432 D+ R + R+ G +D+ ++ + ++ L ++ L+++ Q+L+ Sbjct: 368 DLERLVGRIAFGSANARDLIALKLSLAQIPSLRELCAES--------PSNTLRRIAQTLD 419 Query: 433 KT------LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 + ++D+ P RDGG +++G LDE R KR IA L+ K T Sbjct: 420 SCADLCTLIEEAVADEPPISVRDGGLIKEGYHQRLDELREASVNGKRWIAELEAKERVAT 479 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 I++LKI +N GY+IEVT S+ + L + R+ +QT++N R+ T EL + E+ Sbjct: 480 GIRSLKIGYNKVFGYYIEVTKSNLASL-----PEGRYERKQTLANAERYITPELKEKESL 534 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 I A + + +E F L + + + L ++ +A ID+ +LA ++ E+ + +P + Sbjct: 535 ILEAEDKMVDLEYTLFSELRSKLNAEIPRLQKLAEQVAEIDVYQSLATVSAERGFVKPEL 594 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 +F+V+ GRHP+VE +K FIAN+ L ++ + L+TGPNM GKST+ Sbjct: 595 TTGYDFVVEQGRHPVVEAVMKDGG---FIANNTVL----EEADAHILLITGPNMAGKSTY 647 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ ALI IMAQ+G +VPA+ A + ++D++F+R+G+AD+L G+STFMVEM + + ++ Sbjct: 648 MRQVALIAIMAQIGCFVPAARAKVPMLDRIFTRIGAADDLIGGQSTFMVEMADIQVMTDK 707 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT +S +I+DE+GRGT+T +G++IA A IE++H+T C+ L++THFHEL L + L Sbjct: 708 ATPRSLIIIDELGRGTSTSEGMAIAQAVIEFVHDTIGCKALVSTHFHELAHLEQGLTSLR 767 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 N ++ V +S + + FL K+IPG A SYGI +LAGLPN +I RA +L FE+ Sbjct: 768 NYSMAVQESGDKVNFLRKLIPGAASSSYGIYCARLAGLPNNIIERANGLLYGFEQ 822 >gi|206560523|ref|YP_002231288.1| DNA mismatch repair protein MutS [Burkholderia cenocepacia J2315] gi|238693114|sp|B4ED83|MUTS_BURCJ RecName: Full=DNA mismatch repair protein mutS gi|198036565|emb|CAR52462.1| DNA mismatch repair protein [Burkholderia cenocepacia J2315] Length = 885 Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust. Identities = 310/900 (34%), Positives = 463/900 (51%), Gaps = 54/900 (6%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E TPMM+QY+ IK+ +PD+LVFYRMGDFYELFF+DA A+R L +TLT+RG G Sbjct: 7 EAFAGHTPMMQQYLRIKADHPDTLVFYRMGDFYELFFEDAEKAARLLDLTLTQRGASAGT 66 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 I M GVP H Y+ KL+K+G +AICEQI P +K V R VVR+VTPGTL Sbjct: 67 PIKMAGVPHHAVEQYLAKLVKMGESVAICEQIGDPAT-----SKGPVERKVVRVVTPGTL 121 Query: 140 TEDQLLSPTDSNYLMAVAR------IRTEWAIAWIDISTGIFKISTSNHDRLISDIMRID 193 T+ LLS + YL+A+ + +AW+++++G +++ ++L + + RI Sbjct: 122 TDAALLSDKNDVYLLAMCTGHNKRGVAVNIGLAWLNLASGALRLAEIESEQLAAALERIR 181 Query: 194 PREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS 253 P EI+ + + P FD + R+ D ++ ++D FG+ S Sbjct: 182 PAEILTPDGA------TDAIPAGAGASKRVPAWHFDIASGTQRLCDQLDVASLDGFGAHS 235 Query: 254 QVEKTAAAAAISYIKK-TQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 AA A+ TQ + + E+ + +D A R NLE+ TL G+ Sbjct: 236 LTSACGAAGALLLYAAATQGQQLRHVRSLKVENETEYIGLDPATRRNLELTETLRGTESP 295 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPI--LINPIQKILKS 370 +L +D T G RL + P S +R +I + P ++ ++ L+ Sbjct: 296 TLYSLLDTCCTTMGSRLLRHWLHHPPRASVAAQSRQQAIGALLDAPANASLDALRSALRQ 355 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRD------GIRSGINILNLFLKNDLPEELRGAVEKL 424 DV R RL + P+D++ +RD +R I+ + + N + V+ Sbjct: 356 IADVERITGRLALLSARPRDLSSLRDTFAALPALRERISAI---VAN---ADALARVDAA 409 Query: 425 KKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAE 484 P L+S ++ + RDGG + G DA LDE R + + + + L+ + Sbjct: 410 LAPPAECLDLLTSAIATEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLEARERA 469 Query: 485 ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLE 544 T I NL++++N G++IEVT + D + RQT+ N R+ T EL E Sbjct: 470 RTGIANLRVEYNKVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTFE 523 Query: 545 NRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP 604 ++ +A AL E ++ + A++ + +A +D+ A A A+ ++ P Sbjct: 524 DKALSAQERALARERALYDSVLQALLPFIPECQRVASALAELDLLAAFAERARALDWVAP 583 Query: 605 IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 + ++ GRHP+VE ++Q FIANDC KL L+TGPNMGGKS Sbjct: 584 TFTDEIGIEIEQGRHPVVEAQVEQ-----FIANDCRFG-----PERKLLLITGPNMGGKS 633 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 TF+RQ ALI +MA +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+IL Sbjct: 634 TFMRQTALIALMAYVGSYVPAKSACFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAIL 693 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR 784 N AT QS V++DEIGRGT+T DGL++AWA +L N C L ATH+ ELT L + Sbjct: 694 NDATPQSLVLMDEIGRGTSTFDGLALAWAIARHLLAHNACYTLFATHYFELTQLPAEFPQ 753 Query: 785 FHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL-- 842 N L + GI+FLH V G A+ SYG+QV +LAG+P VI A L E+ Sbjct: 754 AANVHLSAVEHGHGIVFLHAVNEGPANQSYGLQVAQLAGVPAPVIRAARKHLAYLEQQSA 813 Query: 843 -YHHNQKDMRLYYP-EIQTKESKN--NLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 H Q D+ P I E + L +EK++ ++ D++ P AL LY ++ Sbjct: 814 SQHTPQLDLFSAPPAAIDDLECADAPALPDTPHPALEKLRDIDPDDLKPREALDLLYELR 873 >gi|15834794|ref|NP_296553.1| DNA mismatch repair protein [Chlamydia muridarum Nigg] gi|270284960|ref|ZP_06194354.1| DNA mismatch repair protein MutS [Chlamydia muridarum Nigg] gi|270288985|ref|ZP_06195287.1| DNA mismatch repair protein MutS [Chlamydia muridarum Weiss] gi|301336358|ref|ZP_07224560.1| DNA mismatch repair protein MutS [Chlamydia muridarum MopnTet14] gi|13878602|sp|Q9PLD0|MUTS_CHLMU RecName: Full=DNA mismatch repair protein mutS gi|7190210|gb|AAF39048.1| DNA mismatch repair protein MutS [Chlamydia muridarum Nigg] Length = 820 Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust. Identities = 296/828 (35%), Positives = 466/828 (56%), Gaps = 43/828 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+Q+ + K D L+ +R+G+FYE FFDDAL+ ++ L ITLT+R ++IPM G Sbjct: 6 TPMMQQWHQCKEQAGDCLLLFRLGEFYEAFFDDALVLAQNLDITLTQR-----QNIPMSG 60 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P + Y+ +L+ G +IAI EQ ++ G K LV R + RL+TPG L LL Sbjct: 61 IPAAYLDGYVDRLVSRGFKIAIAEQADN-----SEGGKGLVPRTINRLITPGALLSSSLL 115 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREIIFSEKEL 204 +NY++A++++ + + ++ +D+STG F ++ ++ + LI + R+ P E+ L Sbjct: 116 PEKANNYIIAISQVGSLYGLSCLDLSTGTFLVAEYDNTKDLIEAVYRLAPTEL------L 169 Query: 205 SHAEY--------KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 SHA++ K L + L + F++ + ++ + ++++D FG V Sbjct: 170 SHAKFYQKNEPVVKQLQQHLRITLSEHVSWAFEYQSATKKLYTCFQVSSLDGFGLQGLVP 229 Query: 257 K-TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SL 314 AA A +SYI+ ++ + P+ L ID A+++NLE+L + G + SL Sbjct: 230 AINAAGALLSYIQDKLLLPISHLSIPKIYGQHKHLLIDKASQTNLELLSAIHGEHGKGSL 289 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L+ ++ + T GGRL + +P D +I R DS+ FF++ L +++ L D+ Sbjct: 290 LQVMERTSTPMGGRLLRNTLVNPFYDLKEITLRQDSVEFFLKQEPLRKTLKRHLSCVRDL 349 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R +++ PKDI ++RD + S ++I + LPE L L +SL + Sbjct: 350 ERLATKISTTLASPKDIGMLRDSLLSCMHIAHDLQSYTLPEFLTNKCLISSSL-KSLIEA 408 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 LS+ L +LP +G D L R+++ SK I Q + +ET IK LK+ Sbjct: 409 LSTDLLQELPLKVSEGNIFADHYHQDLLRLRNIKTNSKSWILEYQERIRQETGIKKLKVC 468 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 + LGY+IEV SS A L K+ FI RQ+ + RFTT EL ++ + + + Sbjct: 469 YAQALGYYIEVASSFAPQLPKE------FIRRQSRLHAERFTTQELQQFQDEVFSVEDKL 522 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 +E + F+ L I++ + + S IA +D I+LA LA E +Y RP++D+S + Sbjct: 523 QTLETKLFKELCCYILQHRDLILELSTTIADLDYVISLAELAAEYDYRRPLVDHSDALSI 582 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 G HP+ L + + FI ND + + + LLTGPNM GKST++RQ AL+V Sbjct: 583 TKGMHPVALTLLDRGT---FIPNDTIMHSAQTR----MILLTGPNMAGKSTYIRQIALLV 635 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMAQMGS++PA AHIGI+DK+F+R+G+ DNL+ G STFMVEM ETA+IL+ AT++S VI Sbjct: 636 IMAQMGSFIPARSAHIGIIDKIFTRIGAGDNLSKGMSTFMVEMAETANILHNATDRSLVI 695 Query: 735 LDEIGRGTATLDGLSIAWATIEYL--HETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 LDE+GRGT+T DGL+IA A +E+L E + + L ATH+ ELT+L + N V Sbjct: 696 LDEVGRGTSTYDGLAIAQAVVEFLLFTEGKKAKTLFATHYKELTELELHCQHVENFHAVV 755 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 ++ +F++++ G + S+GI V KLAG P +V+SRA IL FE Sbjct: 756 KENGGQPVFMYEIAKGHSKKSFGIHVAKLAGFPLSVVSRAQQILHQFE 803 >gi|37520602|ref|NP_923979.1| DNA mismatch repair protein MutS [Gloeobacter violaceus PCC 7421] gi|44888168|sp|Q7NLT8|MUTS_GLOVI RecName: Full=DNA mismatch repair protein mutS gi|35211596|dbj|BAC88974.1| DNA mismatch repair protein [Gloeobacter violaceus PCC 7421] Length = 890 Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust. Identities = 297/876 (33%), Positives = 469/876 (53%), Gaps = 79/876 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TPM++QY+E+K+ +P L+ YRMGDFYE F DA + SR L I LT R G +G+ IPM Sbjct: 22 TPMLQQYVEVKAQHPHCLLLYRMGDFYETFLADAEIVSRELEIVLTGRQAGDKIGR-IPM 80 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKS------------------- 124 G+P H Y +LI+ G+ + IC+Q+ESP +AK+R ++ Sbjct: 81 AGIPHHALERYCAQLIEKGYAVVICDQVESPEQAKERARQAKVARRSKSDGDAPLLPLLL 140 Query: 125 --------------LVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDI 170 LVRR V R++TPGT+ EDQLL +NYL A+ + W +A+ DI Sbjct: 141 EDGEQIDWEGAESVLVRRAVTRVLTPGTVLEDQLLVGRRNNYLAALVQAGECWGLAFADI 200 Query: 171 STGIFKIST-SNHDRLISDIMRIDPREIIFS-----------EKELSHAEYKSLFETLGN 218 STG F+++ + + L+ +++R+ P E++ S E S + L Sbjct: 201 STGEFQVTQLESAEALVQELLRLQPAEVLLSGDAPDPLVLLRPGEASSERPECLPSQF-- 258 Query: 219 VAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAAAAAISYIKKTQM-VNKP 276 +P +F+ + + + + + +++ FG + + AA + ++ +TQ V+ P Sbjct: 259 CYTLRPRRYFELDEARRLLMETFGVRSLEGFGCENLPLAVRAAGGLVQHLLETQRGVSIP 318 Query: 277 TIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIA 335 G + L +D R NLE+ +T+ G++ SLL +D + T GGR + Sbjct: 319 LEGI-RTYTLSQYLILDHQTRRNLELTQTVRDGAQYGSLLWALDRTRTVMGGRALRRWLL 377 Query: 336 SPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIR 395 PL D+ I R DS+ +L +Q+IL+S D+ R R G +D+ + Sbjct: 378 QPLLDTRAIGRRQDSVAELYDEGLLRERLQRILESVYDLERLAGRCGSGTANARDLVAL- 436 Query: 396 DGIRSGINILNL-FLKNDLPEELRGAVEKLKKLPQSLEK---TLSSMLSDDLPTFKRDGG 451 G ++L L L + ++ L+ +P LE+ L L D P +GG Sbjct: 437 -----GESLLKLPALAEAVAASTSPYLKALQSIPVELERLGEKLRRTLVDTPPLILTEGG 491 Query: 452 FLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSAS 511 +R G L+ R + + + L+ + T I+ LK+ N GY++ ++ A Sbjct: 492 LIRAGVHPELEGMRGQLIEDRDWLVDLEARERARTGIQTLKVGFNKAFGYYLSISRGKAE 551 Query: 512 VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIE 571 ++ ++ +QT++N R+ T EL + E RI NA +E + F IL Sbjct: 552 ------KAPPEYLRKQTLTNEERYITPELKERETRILNAQQQTNQLEYDIFNILRQEAGR 605 Query: 572 QSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSS 631 +L ++ +A +D LA +A +YCRP++ ++ GRHP++E+ + + Sbjct: 606 HVSALRQVARRVAALDALAGLAEVAVYHDYCRPVLGEGREVHIEAGRHPVIEQAI---PA 662 Query: 632 KPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIG 691 F+ ND + + + L +LTGPNM GKS+F+RQ ALI ++AQ+G++VPA A +G Sbjct: 663 GFFVPNDARMGAEAEPD---LIILTGPNMSGKSSFIRQVALIQLLAQVGAFVPARGAVLG 719 Query: 692 IVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIA 751 + D++F+RVG+ D+LA+G+STFMVEM ETA+ILN AT +S V+LDEIGRGTAT DGL+IA Sbjct: 720 VADRIFTRVGAVDDLATGQSTFMVEMTETANILNHATPRSLVLLDEIGRGTATFDGLAIA 779 Query: 752 WATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIAD 811 WA EYL RCR + ATH+HEL +L+ + N + V + + I+FLH+V PG AD Sbjct: 780 WAVAEYLASHIRCRTIFATHYHELNELASVVSGVANYQVTVQELADRIVFLHRVTPGGAD 839 Query: 812 HSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ 847 SYGI+VG+LAGLP +V++RA +L E+ H+Q Sbjct: 840 RSYGIEVGRLAGLPPSVVARARTVLAQVEQ---HSQ 872 >gi|78066863|ref|YP_369632.1| DNA mismatch repair protein [Burkholderia sp. 383] gi|90109841|sp|Q39EX8|MUTS_BURS3 RecName: Full=DNA mismatch repair protein mutS gi|77967608|gb|ABB08988.1| DNA mismatch repair protein MutS [Burkholderia sp. 383] Length = 885 Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust. Identities = 308/895 (34%), Positives = 460/895 (51%), Gaps = 56/895 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ IK+ +PD+LVFYRMGDFYELFF+DA A+R L +TLT+RG G I M G Sbjct: 13 TPMMQQYLRIKADHPDTLVFYRMGDFYELFFEDAAKAARLLDLTLTQRGASAGTPIKMAG 72 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H Y+ KL+K+G +AICEQI P +K V R VVR+VTPGTLT+ LL Sbjct: 73 VPHHAVEQYLAKLVKMGESVAICEQIGDPAT-----SKGPVERKVVRVVTPGTLTDAALL 127 Query: 146 SPTDSNYLMAVAR------IRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 S + YL+A+ + +AW+++++G +++ D+L + + RI P EI+ Sbjct: 128 SDKNDVYLLAMCTGHNKRGVAVNIGLAWLNLASGALRLAEIEPDQLAAALERIRPAEILT 187 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 + + + P FD + R+ D ++ ++D FG+ S Sbjct: 188 PDGATDAVPAGA------GASKRVPAWHFDIASGTQRLCDQLDVASLDGFGAHSLTSACG 241 Query: 260 AAAAISYIKK-TQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA A+ TQ + + E+ + +D A R NLE+ TL G+ +L + Sbjct: 242 AAGALLLYAAATQGQQLRHVRSLKVENETEYIGLDPATRRNLELTETLRGTESPTLYSLL 301 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPI--LINPIQKILKSSPDVPR 376 D T G RL + P S +R +I + P ++ ++ L+ DV R Sbjct: 302 DTCCTTMGSRLLRHWLHHPPRASVAAQSRQQAIGALLDAPANASLDALRSALRQIADVER 361 Query: 377 SLSRLKIGRGEPKDIAVIRD------GIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS 430 RL + P+D++ +RD +R I+ + D + A+ P Sbjct: 362 ITGRLALLSARPRDLSSLRDTFAALPALRERISAI--VANADSLTRVDAALAP----PAE 415 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L+S ++ + RDGG + G DA LDE R + + + + L+ + T I N Sbjct: 416 CLDLLTSAIAPEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLEARERTRTGIAN 475 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 L++++N G++IEVT + D + RQT+ N R+ T EL E++ +A Sbjct: 476 LRVEYNKVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTFEDKALSA 529 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 AL E ++ + A++ + +A +D+ A A A ++ P + Sbjct: 530 QERALARERALYDAVLQALLPFIPECQRVASALAELDLLAAFAERASALDWVAPTFTDEI 589 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 ++ GRHP+VE ++Q FIANDC KL L+TGPNMGGKSTF+RQ Sbjct: 590 GIEIEQGRHPVVEAQVEQ-----FIANDCRFG-----TERKLLLITGPNMGGKSTFMRQT 639 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI +MA +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+ILN AT Q Sbjct: 640 ALIALMAYVGSYVPAKSACFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILNDATPQ 699 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V++DEIGRGT+T DGL++AWA +L N C L ATH+ ELT L + N L Sbjct: 700 SLVLMDEIGRGTSTFDGLALAWAIARHLLAHNACYTLFATHYFELTQLPAEFPQAANVHL 759 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL---YHHNQ 847 + GI+FLH V G A+ SYG+QV +LAG+P VI A L E+ H Q Sbjct: 760 SAVEHGHGIVFLHAVNEGPANQSYGLQVAQLAGVPAPVIRAARKHLAYLEQQSASQHTPQ 819 Query: 848 KDMRLYYPEIQTKE----SKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 D+ P + + L +EK++ ++ D++ P AL LY ++ Sbjct: 820 LDL-FSAPPVAADDLECADAPALPDTPHPALEKLRDIDPDDLKPREALDLLYELR 873 >gi|261393472|emb|CAX51118.1| DNA mismatch repair protein MutS [Neisseria meningitidis 8013] Length = 864 Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust. Identities = 307/893 (34%), Positives = 475/893 (53%), Gaps = 62/893 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM+QY+ IK+ + D LVFYRMGDFYE+FFDDA+ A++ L ITLT RG+ G+ + M G Sbjct: 7 SPMMQQYLGIKAQHTDKLVFYRMGDFYEMFFDDAVEAAKLLDITLTTRGQVDGEPVKMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ +L+K+G +AICEQ+ + K V R VVR+VTPGTLT+ LL Sbjct: 67 VPFHAAEQYLARLVKLGKSVAICEQV-----GEVGAGKGPVERKVVRIVTPGTLTDSALL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 ++N ++AV+ + +AW + +G FK + D+L ++ R+ EI+ + Sbjct: 122 EDKETNRIVAVSPDKKYIGLAWASLQSGEFKTKLTTVDKLDDELARLQAAEILLPDS--- 178 Query: 206 HAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQ---VEKTAAA 261 K+ + V + N + F E + +Y+ + FG + V AA Sbjct: 179 ----KNAPQLQTASGVTRLNAWQFAADAGEKLLTEYFGCQDLRGFGLDGKEHAVAIGAAG 234 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 A ++YI+ TQ + + E + +D+A R NLEI +TLSG + +L+ T+D Sbjct: 235 ALLNYIRLTQNLMPQHLDGLSLETDSQYIGMDAATRRNLEITQTLSGKKSPTLMSTLDLC 294 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G RL A + PL + I R +++ P+Q LK+ D+ R +R+ Sbjct: 295 ATHMGSRLLALWLHHPLRNRAHIRARQEAVAALESQ---YKPLQCRLKNIADIERIAARI 351 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL-PQSLE--KTLSSM 438 +G P+D+A +RD + I DL +E LK + P++L + L Sbjct: 352 AVGNARPRDLASLRDSLFELAQI-------DLSANGSSLLETLKAVFPENLSTAEQLRQA 404 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + + + +DG + G LDE R +++ + L+ K E T + LK++ N Sbjct: 405 ILPEPSVWLKDGNVINHGFHPELDELRRIQNHGDEFLLDLEAKERERTGLSTLKVEFNRV 464 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 G++IE++ + A D + RQT+ N RF T EL E+++ A AL +E Sbjct: 465 HGFYIELSKTQAEQAPAD------YQRRQTLKNAERFITPELKAFEDKVLTAQEQALALE 518 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F+ + + L A++ A +D+ + LAKE+N+ RP + +++GR Sbjct: 519 KQLFDGVLKNLQTALPQLQKAAKAAAALDVLSTFSALAKERNFVRPEFADYPVIHIENGR 578 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ ++ F AN DL + +L LLTGPNMGGKST++RQ ALIV++A Sbjct: 579 HPVVEQQVRH-----FTANHTDLD-----HKHRLMLLTGPNMGGKSTYMRQVALIVLLAH 628 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 G +VPA A IG +D++F+R+G++D+LAS RSTFMVEM ETA IL+ T QS V++DE+ Sbjct: 629 TGCFVPADAATIGPIDQIFTRIGASDDLASNRSTFMVEMSETAYILHHDTEQSLVLMDEV 688 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGL++A A E+L + N+ L ATH+ ELT L ++ N L + + Sbjct: 689 GRGTSTFDGLALAHAVAEHLLQKNKSFSLFATHYFELTYLPEAHTAALNMHLSALEQGQD 748 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 I+FLH++ PG A SYGI V KLAGLP + A L E N+ + ++ Sbjct: 749 IVFLHQIQPGPAGKSYGIAVAKLAGLPVRALKSAQKHLNELEDQAAANRPQLDIF----S 804 Query: 859 TKESKNNLSKNDKLFVEK-------------IKCLNLDEMSPLTALKTLYAVK 898 T S+ N FV+K ++ L+ D ++P AL LY +K Sbjct: 805 TMPSEKGDEPNVGNFVDKAEEKHFEGILAAALEKLDPDSLTPREALSELYRLK 857 >gi|160872862|ref|ZP_02062994.1| DNA mismatch repair protein MutS [Rickettsiella grylli] gi|159121661|gb|EDP46999.1| DNA mismatch repair protein MutS [Rickettsiella grylli] Length = 864 Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust. Identities = 301/888 (33%), Positives = 481/888 (54%), Gaps = 55/888 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM+RQY++IK+ + D L+FYRMGDFYELF+DDA+ A+ L ITLTKRG+ + IPM G Sbjct: 12 TPMIRQYLQIKAQHNDKLLFYRMGDFYELFYDDAIKAAHLLNITLTKRGQSANQAIPMAG 71 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+ Y+ KL+K+G +AICEQI P AK ++R V R++TPGTL+++ LL Sbjct: 72 VPFHSVESYLAKLVKLGESVAICEQIGDPHHAK-----GPMKREVTRIITPGTLSDEALL 126 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 + L+A+ + I++ D+ +G I + + D L S+++R++P E++ SE Sbjct: 127 E-KNQRLLLALYNQHEHFGISYFDMGSGQIHILQVNGEDALASELVRLNPAELLISE--- 182 Query: 205 SHAEYKS--LFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAAA 261 E+K L +P FD+ + + + + FG + A Sbjct: 183 ---EFKKEHLLAAYQKTIRHRPAWEFDYHTATHLLTQQFKTRDLSGFGCQDLHLAIQATG 239 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 ++Y+K TQ I E + + +D+ + NLE+ L G + +LL +D + Sbjct: 240 CLLNYVKDTQRTQLQHIQPIRIERREENVLLDAITQRNLELTLNLQGEKSNTLLSILDNT 299 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G RL + PL I +R +I+ + I+ +Q +LK D+ R +SR+ Sbjct: 300 ATPMGSRLLHRWLHRPLRKRLTIKSRQTAIHHLLTTESFIS-LQALLKLLGDLERIISRI 358 Query: 382 KIGRGEPKDIAVIR----------DGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSL 431 + P+D++ +R + + + N+ F KN L +++K PQ L Sbjct: 359 GLRSARPRDLSQLRLALSILPELHNKLSTCFNVPT-FKKNS--ALLVSLHQEIKTFPQ-L 414 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + L L +D P R+GG + G LDE ++L + + + L+ K + I L Sbjct: 415 FRLLQEALVEDPPAMTREGGMIAKGYHCELDELKNLSAHTGQFLIDLEKKERALSGISTL 474 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 KI N GY+IE++ + + + +I RQT++N+ RF T EL + E++I +A Sbjct: 475 KIGFNRVSGYYIEISRGQSKL------APSHYIRRQTLTNVERFITPELKEFEDKILSAH 528 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + AL +E ++ L + I L + +A +DI + A A + P + Sbjct: 529 SKALHLEKTLYDELLDKISFYLADLQKTTNALAELDILVCFAERAATLHLICPSLTKKPG 588 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 +++GRH ++E L PFIAN C L+ P + L ++TGPNMGGKST++RQ A Sbjct: 589 IYIEEGRHLVIEHAL----DIPFIANSCHLT-PKQR----LLIITGPNMGGKSTYMRQTA 639 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LI ++A +G +VPA A IG +D++F+R+G+AD+LASGRSTFMVEM ETASIL+ AT +S Sbjct: 640 LICLLAMIGCFVPAKSATIGPIDRIFTRIGAADDLASGRSTFMVEMTETASILHNATEES 699 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 VI+DEIGRGT+T DGL++A++ EYL + + L ATH+ ELT L++ N + Sbjct: 700 LVIMDEIGRGTSTFDGLALAFSCAEYLAQHIKAYTLFATHYFELTRLTEENTFITNCHVN 759 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR 851 + N+ IIFL+ + G A+ SYG+ V +LAG+P VI RA L E Q + Sbjct: 760 AREHNDTIIFLYTIEKGPANQSYGLHVAQLAGVPKPVIQRAKQKLTELE------QNTIV 813 Query: 852 LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 P T K +++ + +E++ + D+++P AL+ +Y +K+ Sbjct: 814 TNKPCPSTTSPKVSINPDIIKLLEQV---DPDQLAPKEALEIIYRLKS 858 >gi|194468323|ref|ZP_03074309.1| DNA mismatch repair protein MutS [Lactobacillus reuteri 100-23] gi|194453176|gb|EDX42074.1| DNA mismatch repair protein MutS [Lactobacillus reuteri 100-23] Length = 881 Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust. Identities = 293/834 (35%), Positives = 466/834 (55%), Gaps = 46/834 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K +TPMM QY ++K PD+ +FYR+GDFYELF DDA+ ++ L +TLT R IP Sbjct: 3 KKTTPMMEQYQKVKDQYPDAFLFYRLGDFYELFNDDAVKGAQLLELTLTTRNHSAKNPIP 62 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP N+YI LI G+++AICEQ+E P +AK +V+R V RL+TPGT + Sbjct: 63 MCGVPHRAVNNYIDILIDKGYKVAICEQMEDPKKAK-----GMVKRAVTRLITPGTQMDL 117 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSE 201 D+NYL A++ ++IA+ D+STG K S +N + +++++ + +E++ + Sbjct: 118 NGEQARDNNYLAAISAQNGLFSIAYTDLSTGELKTTSLNNANDAVNELVNLQSKEVVV-D 176 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 EL E + F+ + QP V + IS Y I +D Q ++ A Sbjct: 177 GELP-VEITTQFKQRNILQSHQPTVLKNAEIS-------YLIQDLD-----DQAQQHVVA 223 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 +SY+ TQ + + S + ID +++NLE++ + SG R+ +L +D Sbjct: 224 LLVSYLLTTQKRSLAHLQKAIAYQPSSFMKIDHYSKTNLELMHNMRSGKRQGTLAWLLDE 283 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G RL I PL + I+ R D + + + + +Q+ L D+ R R Sbjct: 284 TKTAMGSRLLKRWIDRPLINQNAISERQDKVQELLDHYFERSNLQQELIKVYDLERLAGR 343 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKTLSSM 438 + G +D+ ++ ++ I + D P EEL+ ++ L + +++++ Sbjct: 344 VAYGSVNGRDLIQLKTSLKQVPKIKYVLETLDSPVFEELQKQLDPLDDVADLIDQSIV-- 401 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 ++ P +GG ++DG + LD+ R + K+ IA LQ + T I NLKI +N+ Sbjct: 402 --EEPPIAVTEGGIIKDGYNDQLDQYRDAMNNGKQWIADLQEHERKLTGINNLKIGYNHV 459 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IEVT + L KDR+ +QT+ N RF+T EL + E I A + +E Sbjct: 460 FGYYIEVTKVNLDKL-----PKDRYERKQTLVNAERFSTPELKEKEALIMGAQEKSTALE 514 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F + + Q L +Q +A +D+ + A+++++ ++ RP ++ +KDGR Sbjct: 515 YDIFVKIREQVKGQITRLQKLAQQLAELDVLQSFAVVSEDYHFVRPEMNTGHVLKIKDGR 574 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VEK + Q ++ ND + D + L+TGPNM GKST++RQ ALI +MAQ Sbjct: 575 HPVVEKFMGHQE---YVPNDVLMGEDTD-----ILLITGPNMSGKSTYMRQLALIAVMAQ 626 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +G +VPA A + I D++F+R+G+AD+L SG STFMVEM+E + L AT++S ++ DEI Sbjct: 627 IGCFVPAKSAELPIFDQVFTRIGAADDLISGESTFMVEMMEANNALTHATDRSLILFDEI 686 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGTAT DG+++A A IEY+H+ R + L +TH+HELT L SL R N + ++ + Sbjct: 687 GRGTATYDGMALAQAIIEYVHQHVRAKTLFSTHYHELTALESSLARLKNVHVGATEKDGE 746 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 ++FLHKV G AD SYGI V KLAG+P++++ RA IL+ E QKD++L Sbjct: 747 LVFLHKVSAGPADKSYGIHVAKLAGMPSSLLKRADTILQKLE------QKDVKL 794 >gi|297530518|ref|YP_003671793.1| DNA mismatch repair protein MutS [Geobacillus sp. C56-T3] gi|297253770|gb|ADI27216.1| DNA mismatch repair protein MutS [Geobacillus sp. C56-T3] Length = 903 Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust. Identities = 285/830 (34%), Positives = 462/830 (55%), Gaps = 50/830 (6%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + S TPM++QY+ IK+ PD+ +F+R+GDFYELFFDDA+ A++ L ITLT R + + Sbjct: 1 MPSYTPMIQQYLHIKAQYPDAFLFFRLGDFYELFFDDAIKAAQELEITLTSRDGGGDERV 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A YI++LI+ G+++AICEQ+E P AK +VRR VV+L+TPGTL E Sbjct: 61 PMCGVPYHSAQGYIEQLIEKGYKVAICEQVEDPKTAK-----GVVRREVVQLITPGTLME 115 Query: 142 DQLLSPTDSNYLMAVARIR-TEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIF 199 + L+ +++YL A+ + +A+ D+STG +++ S+ + +++ + REII Sbjct: 116 GKGLTEKENHYLAALTPFADGTYGLAYADLSTGEVRLTLLSSWEEAANELHAVGAREIIV 175 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE-KT 258 + S E+ + AV+ + ++ + D +N G +Q + + Sbjct: 176 ATD--SGEEWVRELKERYGAAVSYED--------DTSLCDEWN----GVIGHVAQEKLRM 221 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKT 317 AAA + Y+ +TQ + E + + +D ++ +LE++ T+ S R+ SLL Sbjct: 222 AAARLLHYLVRTQKRRLDHLQPAELYQVDHYMKMDRHSKLHLELVETVRSKGRKGSLLWL 281 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D ++T GGRL + + PL D +I RLD + + ++ L+ D+ R Sbjct: 282 LDETVTAMGGRLLKQWLDRPLIDRREIERRLDFVETLKTSYFERQELRDRLRGVYDIERL 341 Query: 378 LSRLKIGRGEPKDIAVIRD------GIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSL 431 + R+ G +D+ ++ +R + L + + L E L E + L +S+ Sbjct: 342 VGRVSYGNANARDLVQLKKSLLQVPALRQTVGALPVAEADKLCERLDPCEELVDLLERSI 401 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + + P ++G ++DG D LD R K IA L+ K E T IK+L Sbjct: 402 Q--------EQPPLSVKEGNLIKDGYDKQLDRYRDASRNGKAWIAELEAKEREATGIKSL 453 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 K+ +N GY+IEVT + ++ + R+ +QT++N RF T EL + E I A Sbjct: 454 KVGYNRVFGYYIEVTKPNLPLV-----PEGRYERKQTLANAERFITPELKEKEALILEAE 508 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 ++ +E E F + + + L ++ IA +D+ + A ++ E Y RP Sbjct: 509 EKSIELEYELFVAIREQVKQYIPRLQTLAKAIAELDVLQSFATISDEYRYVRPQFSTERV 568 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 +++ GRHP+VEK L Q ++ NDC ++ ++ L+TGPNM GKST++RQ A Sbjct: 569 LVIQGGRHPVVEKVLGAQM---YVPNDCYMN-----REREMLLITGPNMAGKSTYMRQVA 620 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 L +MAQ+G +VPA A + I D++F+R+G+AD+L++G+STFMVEM+E + AT S Sbjct: 621 LTAVMAQIGCFVPAERAVLPIFDQVFTRIGAADDLSAGQSTFMVEMLEARHAIAHATQNS 680 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 ++ DEIGRGT+T DG+++A A IEY+H+ + L +TH+HELT L +SL R N + Sbjct: 681 LILFDEIGRGTSTYDGMALAQAIIEYIHDHIGAKTLFSTHYHELTALERSLPRLSNVHAR 740 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 + N ++FLH++ G AD SYGI V +LAGLP ++I RA IL EK Sbjct: 741 AIEENGKVVFLHQIADGPADKSYGIHVAELAGLPASLIERARAILAELEK 790 >gi|227544212|ref|ZP_03974261.1| DNA mismatch repair protein MutS [Lactobacillus reuteri CF48-3A] gi|300908208|ref|ZP_07125674.1| DNA mismatch repair protein MutS [Lactobacillus reuteri SD2112] gi|227185805|gb|EEI65876.1| DNA mismatch repair protein MutS [Lactobacillus reuteri CF48-3A] gi|300894635|gb|EFK87991.1| DNA mismatch repair protein MutS [Lactobacillus reuteri SD2112] Length = 881 Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust. Identities = 293/834 (35%), Positives = 467/834 (55%), Gaps = 46/834 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K +TPMM QY ++K PD+ +FYR+GDFYELF DDA+ ++ L +TLT R IP Sbjct: 3 KKTTPMMEQYQKVKDQYPDAFLFYRLGDFYELFNDDAVKGAQLLELTLTTRNHSAKNPIP 62 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP N+YI LI G+++AICEQ+E P +AK +V+R V RL+TPGT + Sbjct: 63 MCGVPHRAVNNYIDILIDKGYKVAICEQMEDPKKAK-----GMVKRAVTRLITPGTQMDL 117 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSE 201 D+NYL A++ ++IA+ D+STG K S +N + +++++ + +E++ + Sbjct: 118 NGEQARDNNYLAAISGQNGVFSIAYTDLSTGELKTTSLNNANDAVNELVNLQSKEVVV-D 176 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 EL AE + F+ + QP V + IS Y +D Q ++ A Sbjct: 177 GELP-AEITTQFKQRNILQSHQPTVLKNAEIS-------YLTQDLD-----DQAQQHVVA 223 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 +SY+ TQ + + S + ID +++NLE++R + SG R+ +L +D Sbjct: 224 LLVSYLLTTQKRSLAHLQKAIAYQPSSFMKIDHYSKTNLELMRNMRSGKRQGTLAWLLDE 283 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G RL I PL + I+ R D + + + + +Q+ L D+ R R Sbjct: 284 TKTAMGSRLLKRWIDRPLINQNAISERQDKVQELLDHYFERSNLQQELIKVYDLERLAGR 343 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKTLSSM 438 + G +D+ ++ ++ I + D P EEL+ ++ L + +++++ Sbjct: 344 IAYGSVNGRDLIQLKTSLKQVPKIKYVLETLDSPVFEELQKQLDPLDDVADLIDQSIV-- 401 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 ++ P +GG ++DG + LD+ R + K+ IA LQ + T I NLKI +N+ Sbjct: 402 --EEPPIAVTEGGVIKDGYNDQLDQYRDAMNNGKQWIADLQEHERKLTGINNLKIGYNHV 459 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IEVT + + L KDR+ +QT+ N RF+T EL + E I A + +E Sbjct: 460 FGYYIEVTKVNLNKL-----PKDRYERKQTLVNAERFSTPELKEKEALIMGAQEKSTALE 514 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F + + Q L +Q +A +D+ + A+++++ ++ RP ++ +KDGR Sbjct: 515 YDIFVKIREQVKGQITRLQKLAQQLAELDVLQSFAVVSEDYHFVRPKMNTGHVLKIKDGR 574 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VEK + Q ++ N+ + D + L+TGPNM GKST++RQ ALI +MAQ Sbjct: 575 HPVVEKFMGHQE---YVPNNVLMGEDTD-----ILLITGPNMSGKSTYMRQLALIAVMAQ 626 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +G +VPA A + I D++F+R+G+AD+L SG STFMVEM+E + L AT++S ++ DEI Sbjct: 627 IGCFVPAKSAELPIFDQVFTRIGAADDLISGESTFMVEMMEANNALTHATDRSLILFDEI 686 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGTAT DG+++A A IEY+H+ R + L +TH+HELT L SL R N + ++ + Sbjct: 687 GRGTATYDGMALAQAIIEYVHQHVRAKTLFSTHYHELTALENSLTRLKNVHVGATEKDGE 746 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 ++FLHKV G AD SYGI V KLAG+P+ ++ RA IL+ E QKD++L Sbjct: 747 LVFLHKVSAGPADKSYGIHVAKLAGMPSLLLKRADTILQKLE------QKDVKL 794 >gi|325135382|gb|EGC58003.1| DNA mismatch repair protein MutS [Neisseria meningitidis M0579] Length = 864 Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust. Identities = 306/893 (34%), Positives = 475/893 (53%), Gaps = 62/893 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM+QY+ IK+ + D LVFYRMGDFYE+FFDDA+ A++ L ITLT RG+ G+ + M G Sbjct: 7 SPMMQQYLGIKAQHTDKLVFYRMGDFYEMFFDDAVEAAKLLDITLTTRGQVDGEPVKMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ +L+K+G +AICEQ+ + K V R VVR+VTPGTLT+ LL Sbjct: 67 VPFHAAEQYLARLVKLGKSVAICEQV-----GEVGAGKGPVERKVVRIVTPGTLTDSALL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 ++N ++AV+ + +AW + +G FK + D+L ++ R+ EI+ + Sbjct: 122 EDKETNRIVAVSPDKKYIGLAWASLQSGEFKTKLTTVDKLDDELARLQAAEILLPDS--- 178 Query: 206 HAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQ---VEKTAAA 261 K+ + V + N + F E + +Y+ + FG + V AA Sbjct: 179 ----KNAPQLQTASGVTRLNAWQFAADAGEKLLTEYFGCQDLRGFGLDGKEHAVAIGAAG 234 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 A ++YI+ TQ + + E + +D+A R NLEI +TLSG + +L+ T+D Sbjct: 235 ALLNYIRLTQNLMPQHLDGLSLETDSQYIGMDAATRRNLEITQTLSGKKSPTLMSTLDLC 294 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G RL A + PL + I R +++ P+Q LK+ D+ R +R+ Sbjct: 295 ATHMGSRLLALWLHHPLRNRAHIRARQEAVAALESQ---YKPLQCRLKNIADIERIAARI 351 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL-PQSLE--KTLSSM 438 +G P+D+A +RD + I DL +E LK + P++L + L Sbjct: 352 AVGNARPRDLASLRDSLFELAQI-------DLSANGSSLLETLKAVFPENLSTAEQLRQA 404 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + + + +DG + G LDE R +++ + L+ K E T + LK++ N Sbjct: 405 ILPEPSVWLKDGNVINHGFHPELDELRRIQNHGDEFLLDLEAKERERTGLSTLKVEFNRV 464 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 G++IE++ + A D + RQT+ N RF T EL E+++ A AL +E Sbjct: 465 HGFYIELSKTQAEQAPAD------YQRRQTLKNAERFITPELKAFEDKVLTAQEQALALE 518 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F+ + + L A++ A +D+ + LAKE+N+ RP + +++GR Sbjct: 519 KQLFDGVLKNLQTALPQLQKAAKAAAALDVLSTFSALAKERNFVRPEFADYPAIHIENGR 578 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ ++ F AN +L + +L LLTGPNMGGKST++RQ ALIV++A Sbjct: 579 HPVVEQQVRH-----FTANHTNLD-----HKHRLMLLTGPNMGGKSTYMRQVALIVLLAH 628 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 G +VPA A IG +D++F+R+G++D+LAS RSTFMVEM ETA IL+ AT QS V++DE+ Sbjct: 629 TGCFVPADAATIGPIDQIFTRIGASDDLASNRSTFMVEMSETAYILHHATEQSLVLMDEV 688 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGL++A A E+L + N+ L ATH+ ELT ++ N L + + Sbjct: 689 GRGTSTFDGLALAHAVAEHLLQKNKSFSLFATHYFELTYPPEAHAAAVNMHLSALEQGQD 748 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 I+FLH++ PG A SYGI V KLAGLP + A L E N+ + ++ Sbjct: 749 IVFLHQIQPGPAGKSYGIAVAKLAGLPVRALKSAQKHLNELENQAAANRPQLDIF----S 804 Query: 859 TKESKNNLSKNDKLFVEK-------------IKCLNLDEMSPLTALKTLYAVK 898 T S+ N FV+K ++ L+ D ++P AL LY +K Sbjct: 805 TMPSEKGDEPNVGNFVDKAEEKHFEGILAAALEKLDPDSLTPRKALSELYRLK 857 >gi|72383081|ref|YP_292436.1| DNA mismatch repair protein MutS [Prochlorococcus marinus str. NATL2A] gi|90109851|sp|Q46IE5|MUTS_PROMT RecName: Full=DNA mismatch repair protein mutS gi|72002931|gb|AAZ58733.1| DNA mismatch repair protein MutS [Prochlorococcus marinus str. NATL2A] Length = 926 Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust. Identities = 312/850 (36%), Positives = 471/850 (55%), Gaps = 63/850 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TP +R Y+E+K NPD ++ YR+GDF+E FF+DA+ S+ L ITLT + GK +GK IPM Sbjct: 90 TPALRHYVELKKENPDRVLLYRLGDFFECFFEDAITLSKLLEITLTSKEAGKKIGK-IPM 148 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G+P H ++ Y +LIK G IAIC+Q+E+ A +GNK L++R + RL+TPGT+ E+ Sbjct: 149 AGIPHHASDRYCTELIKKGLSIAICDQLEA---APTKGNK-LIKRGITRLITPGTILEEG 204 Query: 144 LLSPTDSNYLMAV---ARIRTE---WAIAWIDISTGIFKISTS-NHDRLISDIMRIDPRE 196 +LS +N+L +V A+ E W++A ID+STG F + + L ++++++ E Sbjct: 205 MLSAKKNNWLASVLLEAKSNQEIIDWSLAKIDVSTGEFIVQEGQGSNNLRHELIKLNAAE 264 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPN-VFFDHSISESRIADYYNITTVDTFGSFSQ- 254 +I +K +S+ K +E L + + + N F + + + I ++Y + +D+ G S Sbjct: 265 VISEKKSISN---KIWYEGL--IEITEFNRTSFSNLEAITTIKNHYCLNNIDSLGIHSNS 319 Query: 255 VEKTAAAAAISYIKKT----------QMVNKPTIGYPEREDIQSTLFIDSAARSNLEILR 304 + ISY+ KT ++ I YP ++ +S L IDS R NLEI Sbjct: 320 LSIRTIGGLISYLNKTHPNIDDKSNNEIKTNICIDYPRIKNSRSGLIIDSQTRRNLEITS 379 Query: 305 TLS-GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINP 363 T G + SLL ID ++T G R I P D I R + I F +++ L Sbjct: 380 TQKDGKFQGSLLWAIDKTLTAMGARCIRRWIEEPTKDVNAIKNRQNIIGFLVKSSTLRKN 439 Query: 364 IQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEK 423 I+K L++ D+ R R + +D+ I +GI N L L +KN L E + + Sbjct: 440 IRKTLRAMGDLERLSGRAGAQQAGARDLVAIAEGI----NRLPL-IKNYLNEPIFDKTKY 494 Query: 424 LKKLPQ------SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIAS 477 + L +++ + D+ P +GG DG + LD R+ D + S Sbjct: 495 FDSIINIDKDLIELASKINNQIIDNPPLSLTEGGLFYDGINPVLDGLRNQLDDHNIWLNS 554 Query: 478 LQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTT 537 +L+ +++ I NLK++++ + GYF+ V+ S A + D +I RQT++N RF T Sbjct: 555 QELEERKKSNINNLKLQYHRSFGYFLAVSKSKA------INVPDHWIRRQTLTNEERFVT 608 Query: 538 LELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAK 597 L + E +I +E E F L +S + A++ I+ +D+ LA LA Sbjct: 609 PGLKEREGKIFQVRARISELEYELFCDLRKLTGSKSNIIRQAAKAISHLDVLTGLAELAA 668 Query: 598 EQNYCRPII------DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGK 651 NY +P I D S + DGRHP+VE+ L K F+ ND +L D Sbjct: 669 NHNYIQPQIIDMNEQDKSRKLSIIDGRHPVVEQIL---VDKVFVPNDIELGSKTD----- 720 Query: 652 LWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRS 711 L +L+GPN GKS +LRQ L+ IMAQ+GS++PA AH+GI D++F+RVG+ D+LASG+S Sbjct: 721 LIILSGPNASGKSCYLRQVGLLQIMAQIGSWIPAKSAHMGIADQVFTRVGAVDDLASGQS 780 Query: 712 TFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATH 771 TFMVEMIETA ILN AT S V+LDEIGRGT+T DGLSIAW+ E+L + + R + ATH Sbjct: 781 TFMVEMIETAFILNNATENSLVLLDEIGRGTSTFDGLSIAWSVSEFLAKKIKSRSIFATH 840 Query: 772 FHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISR 831 +HEL +S+ ++ N + V N + FLHKV G A+ SYGI+ +LAG+P V++ Sbjct: 841 YHELNQISEYIENVENYKVVVEYKNHSLSFLHKVERGGANKSYGIEAARLAGVPPDVVNN 900 Query: 832 AYDILKTFEK 841 A ILK EK Sbjct: 901 ARLILKNLEK 910 >gi|327402833|ref|YP_004343671.1| DNA mismatch repair protein MutS [Fluviicola taffensis DSM 16823] gi|327318341|gb|AEA42833.1| DNA mismatch repair protein MutS [Fluviicola taffensis DSM 16823] Length = 874 Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust. Identities = 304/906 (33%), Positives = 503/906 (55%), Gaps = 60/906 (6%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 +E + TP+M+QY EIK+ +P +L+ +R+GDFYE F +DA+ AS+ LGI LTKRG Sbjct: 4 KEKGPAETPLMKQYNEIKAKHPQALLLFRVGDFYETFGEDAITASKTLGIILTKRGAGSP 63 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 +I + G P H+ + Y+ KL++ GHR+AIC+Q+E P + K++V+R V LVTPG Sbjct: 64 SEIELAGFPHHSLDTYLPKLVRAGHRVAICDQLEDP-----KMTKTIVKRGVTELVTPGI 118 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREII 198 D++L +N+L A+ + IA++D++TG F + N + + I +P EII Sbjct: 119 AFSDKILDGHHNNFLGAIHFGKEIHGIAFLDVTTGEFFTAQGNTEYITKLIQGFEPSEII 178 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK- 257 + + + H+ ++ LF T + F + R+ +++ ++ FG +E Sbjct: 179 YQKNK--HSLFQELFGT-KYYTFRLDDWIFTPDFGKERLTNHFKTNSMKGFG-IDDLEYG 234 Query: 258 -TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 A+ A + Y+ +TQ I +R + + +++D NLE++ L+ ++L Sbjct: 235 IIASGAILHYLGETQHDKLGHITQIQRIEEEKYVWLDRFTIRNLELIAPLNEGG-KTLFN 293 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 I+ + T G RL I PL +IN R+D++ L I+ L D+ R Sbjct: 294 VINGTKTPMGDRLLKRWIVMPLKHEEQINLRIDAVADLTDKHSLRAEIEHELNEIGDMER 353 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEK-----LKKLPQSL 431 +S++ +G+ PK++ V L+ L++ +P LR A L++L Q L Sbjct: 354 LISKVAVGKIHPKELRV-----------LSRILEHMVP--LRDACSHSVSNLLQQLSQRL 400 Query: 432 E------KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE 485 E + + ML D G + +G + LDE R++ + K + ++Q + +E+ Sbjct: 401 EPCEEFIQLVERMLLKDPAVMLGKGPVIANGVHSELDELRAISESGKDYLEAMQERESEK 460 Query: 486 TKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 T I +LKI NN GY++EV ++ KD + + +I +QT+ + R+ T EL + E Sbjct: 461 TGIPSLKIAFNNVFGYYLEVRNTH-----KD-KVPEEWIRKQTLVSAERYITPELKEYET 514 Query: 546 RITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPI 605 +I A + IE + + L + ++ + +IA +D A LA NY +P Sbjct: 515 KILGAEDKISAIEAKLYFELVQKLSAFVGAIQRNAFLIAQLDCLTGFADLAIRNNYSKPT 574 Query: 606 IDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKST 665 I++S +K+GRHP++E LK + ++ ND L DK ++ ++TGPNM GKS Sbjct: 575 INDSYVIDIKNGRHPVIEGQLK--AGVEYVPNDVYL----DKEEQQIIMITGPNMSGKSA 628 Query: 666 FLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILN 725 LRQ ALIV+MAQMGS++PA A +GIVDK+F+RVG++DN++SG STFMVEM ET+SILN Sbjct: 629 LLRQTALIVLMAQMGSFIPADAAILGIVDKVFTRVGASDNISSGESTFMVEMNETSSILN 688 Query: 726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRG--LLATHFHELTDLSKSLK 783 +++S ++LDEIGRGT+T DG+SIAWA E++HE + +G L ATH+HEL +++ Sbjct: 689 NLSDRSLILLDEIGRGTSTYDGISIAWAIAEFIHEFPQAKGKTLFATHYHELNEMAVQFP 748 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY 843 R HN + V + + IIFL K++ G ++HS+GI V KLAG+P VI RA +L+ E Sbjct: 749 RIHNYNVSVKEVGQKIIFLRKLVEGGSEHSFGIHVAKLAGMPTKVIQRAELMLEQLE--L 806 Query: 844 HHNQKDMRLYYPEIQTKESKNNL-----SKNDKLFVE---KIKCLNLDEMSPLTALKTLY 895 +H +M+ + + N++ ND + + ++ ++++ ++P+ AL L Sbjct: 807 NHRSSEMKNVKDVVIQAGASNDMQLSFFQLNDPVLEQIHDQLISIDINTLTPVEALMKLN 866 Query: 896 AVKAWT 901 +K T Sbjct: 867 EIKKLT 872 >gi|91215167|ref|ZP_01252139.1| DNA mismatch repair protein [Psychroflexus torquis ATCC 700755] gi|91186772|gb|EAS73143.1| DNA mismatch repair protein [Psychroflexus torquis ATCC 700755] Length = 872 Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust. Identities = 310/890 (34%), Positives = 495/890 (55%), Gaps = 53/890 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M+QY IK PD+++ +R+GDFYE F +DA+ ASR L I LT R G+ + G Sbjct: 10 TPLMKQYNAIKDKYPDAMLLFRVGDFYETFGEDAVSASRILNIVLTNRNNG-GERSELAG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H+ N Y+ KL+K G R+AIC+Q+E P + K++V+R V L+TPG D +L Sbjct: 69 FPHHSLNTYLPKLVKAGLRVAICDQLEDP-----KQTKTIVKRGVTELITPGVSLNDDVL 123 Query: 146 SPTDSNYLMAV-ARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 S +N+L ++ + + I+++D+STG F +S + + + + +P EI+ S+K+ Sbjct: 124 SRNSNNFLCSIFLGSKQNYGISFLDVSTGEFLVSEGSLEDIDKLLQNFNPSEILISKKQK 183 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSI-----SESRIADYYNITTVDTFGSFSQVEKTA 259 + +L +TLG P + D I S I ++ T+V FG E Sbjct: 184 N-----ALHDTLGK---QHPFFYLDDWIFKTDFSLEAIHSHFKTTSVKGFGVQDFEEGLI 235 Query: 260 AAAAI-SYIKKT---QMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 ++ AI Y+ +T Q+ + TI +ED +++D NLE+ + S +L+ Sbjct: 236 SSGAILHYLSETNHFQLEHINTISRIAKEDY---VWMDRFTIRNLELYHS-STPGAVTLI 291 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 ID + + G R+ +A PL KIN RL++++ F N L I+ LK D+ Sbjct: 292 DVIDKTASAMGSRMLKRWLAFPLKSEYKINQRLENVSLFKSNFDLQTEIRSYLKQISDIE 351 Query: 376 RSLSRLKIGRGEPKDIAVIR---DGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE 432 R +S++ + P+++ ++ D I+S + L L+ E L+ ++L L Sbjct: 352 RLISKVATLKINPRELLQLKNSMDVIKSCM----LLLRKSGHESLKTIADQLNSC-DVLR 406 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 + S LSD+ P G ++ G LD+ R + + + K ++ T I +LK Sbjct: 407 AKIDSALSDEPPVNILKGNAIKSGFCEELDDIRKIAFSGHDFLNEMLEKESKLTGIPSLK 466 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 I NN GY++EV + + + ++ + +QT+ N R+ T EL E +I A Sbjct: 467 IGSNNVYGYYLEVRHAHKNKVPEE------WTRKQTLVNAERYITEELKVYEEKILTAEE 520 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 +E + F L + + + + IA +D A LA E+NY RPII+ S Sbjct: 521 KISTLEQQLFHELVIWTQDYIKVIQQNAVQIAQLDCLSGFAQLAMERNYNRPIINGSLEL 580 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 +K+GRHP++E LK + + +I+ND L D+ + ++ ++TGPNM GKS LRQ AL Sbjct: 581 NIKEGRHPVIENQLK--AEEEYISNDLYL----DQETHQIIMITGPNMSGKSALLRQTAL 634 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 IV++AQMGS++PAS A IGIVDK+F+RVG++DN++ G STFMVEM E+ASILN + +S Sbjct: 635 IVLLAQMGSFIPASSAEIGIVDKIFTRVGASDNISMGESTFMVEMNESASILNNLSGRSL 694 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHE-TNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 V+LDEIGRGT+T DG+SIAWA EY+HE + + L ATH+HEL ++SK +R +N + Sbjct: 695 VLLDEIGRGTSTYDGISIAWAIAEYIHEHPTKAKTLFATHYHELNEMSKQFERINNYNVS 754 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR 851 V + + ++FL K++PG ++HS+GI V K+AG+P V+ +A+ ILK E Y + D Sbjct: 755 VKELKDKVLFLRKLVPGGSEHSFGIHVAKMAGMPQFVVQKAHKILKKLES-YRDLEGDAS 813 Query: 852 LYYPEIQTKESKNNLSKNDKLFVE---KIKCLNLDEMSPLTALKTLYAVK 898 L IQ + + + +D L E +I L++D ++P+ AL L +K Sbjct: 814 LLKQAIQPEPQLSFFNMDDPLLEEIKDEILSLDIDTLTPVEALMKLNEIK 863 >gi|262283656|ref|ZP_06061421.1| DNA mismatch repair protein mutS [Streptococcus sp. 2_1_36FAA] gi|262260713|gb|EEY79414.1| DNA mismatch repair protein mutS [Streptococcus sp. 2_1_36FAA] Length = 847 Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust. Identities = 301/884 (34%), Positives = 480/884 (54%), Gaps = 57/884 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK D+ + +RMGDFYELF++DA+ A++ L I LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYQDAFLLFRMGDFYELFYEDAVNAAQILEIALTSRNKNSENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI+ G+++AI EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPYHSAQQYIDVLIESGYKVAIAEQMEDPKQA-----VGVVKREVVQVITPGTVV-DSSK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSEKEL 204 ++N+L+A+ R + +A++D++TG F++ S S+ D+ +I + RE++ L Sbjct: 121 PVGENNFLVALDRQEQAYGLAYMDLATGEFQVTSLSDFDQACGEIRNLRAREVVVGYC-L 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAA 263 S E + L + + + +SE A + V G S +EK A Sbjct: 180 SEDEQQVLSKQMSLL------------LSEVEEA----MEDVQLLGDELSSLEKQTAGKL 223 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 ++Y+ +TQM + +I+ L +D A +++L++ +G + SL +D + Sbjct: 224 LAYVFQTQMRELSHLKKAHHYEIKDFLQMDYATKTSLDLTENARTGKKHGSLFWLMDETK 283 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGRL I PL D +I R + + F+ + + LK D+ R +SR+ Sbjct: 284 TAMGGRLLRSWIQHPLIDKGRIIKRQNVVQVFLDYFFERSDLADSLKGVYDIERLVSRVS 343 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 G+ PKD+ + + I ++ + P L V +L +P+ LE +SS + D Sbjct: 344 FGKTNPKDLLQLSSTLSHVPQIRSILETIESP-ALESLVARLDAIPE-LENLISSAIDPD 401 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P +G +R G D +LD+ R + + IA ++ K E + I NLKI +N GY+ Sbjct: 402 APQVITEGNIIRTGFDETLDQYRLVMREGTSWIADIESKEREASGIANLKIDYNKKDGYY 461 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 VT+S + F + T+ N RF T EL +E + A + +E E F Sbjct: 462 FHVTNSQLGNVPS------HFFRKATLKNSERFGTEELARIEGEMLEAREKSANLEYEIF 515 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 + + + + L +Q +A +D+ + A++A+ Q+ RP +S + +K GRH ++ Sbjct: 516 MRIREEVGKYIQRLQALAQTLATVDVLQSFAVVAESQHLVRPSFTSSRSLQIKKGRHAVI 575 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 EK + QS +I N +L D + L+TGPNM GKST++RQ A+IVIMAQMGSY Sbjct: 576 EKVMGAQS---YIPNSIELDQETD-----IQLITGPNMSGKSTYMRQLAMIVIMAQMGSY 627 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA A + I D +F+R+G+AD+L SG+STFMVEM+E + QA++ S ++ DE+GRGT Sbjct: 628 VPAEVASLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANRAIRQASDHSLILFDELGRGT 687 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFL 802 AT DG+++A A IEY+H+ + + L ATH+HELT LS SL R N + + + + FL Sbjct: 688 ATYDGMALAQAIIEYIHDRTKAKTLFATHYHELTGLSSSLTRLENVHVATLEKDGQVTFL 747 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKES 862 HK+ G AD SYGI V K+AGLP +++RA IL E NQ+ P +T Sbjct: 748 HKIEAGPADKSYGIHVAKIAGLPKDLLTRADAILTDLE-----NQEKREASLPASRTDSQ 802 Query: 863 KNNLSKNDKLFVE--------KIKCLNLDEMSPLTALKTLYAVK 898 K +S+ LFVE +++ L++ M+PL + + +K Sbjct: 803 K--VSEQMSLFVEETENPVLTELRDLDIYNMTPLEVMAAVAELK 844 >gi|254247817|ref|ZP_04941138.1| MutS 1 protein [Burkholderia cenocepacia PC184] gi|124872593|gb|EAY64309.1| MutS 1 protein [Burkholderia cenocepacia PC184] Length = 885 Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust. Identities = 308/901 (34%), Positives = 465/901 (51%), Gaps = 56/901 (6%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E TPMM+QY+ IK+ +PD+LVFYRMGDFYELFF+DA A+R L +TLT+RG G Sbjct: 7 EAFAGHTPMMQQYLRIKADHPDTLVFYRMGDFYELFFEDAEKAARLLDLTLTQRGASAGT 66 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 I M GVP H Y+ KL+K+G +AICEQI P +K V R VVR+VTPGTL Sbjct: 67 PIKMAGVPHHAVEQYLAKLVKMGESVAICEQIGDPAT-----SKGPVERKVVRVVTPGTL 121 Query: 140 TEDQLLSPTDSNYLMAVAR------IRTEWAIAWIDISTGIFKISTSNHDRLISDIMRID 193 T+ LLS + YL+A+ + +AW+++++G +++ D+L + + RI Sbjct: 122 TDAALLSDKNDVYLLAMCTGHNKRGVAVNIGLAWLNLASGALRLAEIEPDQLAAALERIR 181 Query: 194 PREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS 253 P EI+ + + P FD + R+ D ++ ++D FG+ S Sbjct: 182 PAEILTPDGA------TDAIPAGAGASKRVPAWHFDIASGTQRLCDQLDVASLDGFGAHS 235 Query: 254 QVEKTAAAAAISYIKK-TQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 AA A+ TQ + + E+ + +D A R NLE+ TL G+ Sbjct: 236 LTSACGAAGALLLYAAATQGQQLRHVRSLKVENETEYIGLDPATRRNLELTETLRGTESP 295 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPI--LINPIQKILKS 370 +L +D T G RL + P S +R +I + P ++ ++ L+ Sbjct: 296 TLYSLLDTCCTTMGSRLLRHWLHHPPRASVAAQSRQQAIGALLDAPANASLDALRSALRQ 355 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRD------GIRSGINILNLFLKNDLPEELRGAVEKL 424 DV R RL + P+D++ +RD +R I+ + + N + V+ Sbjct: 356 IADVERITGRLALLSARPRDLSSLRDTFAALPALRERISAI---VAN---ADALARVDAA 409 Query: 425 KKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAE 484 P L+S ++ + RDGG + G DA LDE R + + + + L+ + Sbjct: 410 LAPPAECLDLLTSAIAPEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLEARERA 469 Query: 485 ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLE 544 T I NL++++N G++IEVT + D + RQT+ N R+ T EL E Sbjct: 470 RTGIANLRVEYNKVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTFE 523 Query: 545 NRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP 604 ++ +A AL E ++ + A++ + +A +D+ A A A+ ++ P Sbjct: 524 DKALSAQERALARERALYDSVLQALLPFIPECQRVASALAELDLLAAFAERARALDWVAP 583 Query: 605 IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 + ++ GRHP+VE ++Q FIANDC KL L+TGPNMGGKS Sbjct: 584 TFTDEIGIEIEQGRHPVVEAQVEQ-----FIANDCRFG-----TERKLLLITGPNMGGKS 633 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 TF+RQ ALI +MA +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+IL Sbjct: 634 TFMRQTALIALMAYVGSYVPAKSACFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAIL 693 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR 784 N AT QS V++DEIGRGT+T DGL++AWA +L N C L AT + ELT L + Sbjct: 694 NDATPQSLVLMDEIGRGTSTFDGLALAWAIARHLLAHNACYTLFATRYFELTQLPAEFPQ 753 Query: 785 FHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL-- 842 N L + GI+FLH V G A+ SYG+QV +LAG+P VI A L E+ Sbjct: 754 AANVHLSAVEHGHGIVFLHAVNEGPANQSYGLQVAQLAGVPAPVIRAARKHLAYLEQQSA 813 Query: 843 -YHHNQKDMRLYYP----EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAV 897 H Q D+ P +++ ++ + L +EK++ ++ D++ P AL LY + Sbjct: 814 SQHTPQLDLFSAPPAAVDDLECADA-SALPDTPHPALEKLRDIDPDDLKPREALDLLYEL 872 Query: 898 K 898 + Sbjct: 873 R 873 >gi|138894826|ref|YP_001125279.1| DNA mismatch repair protein MutS [Geobacillus thermodenitrificans NG80-2] gi|189030720|sp|A4IMI0|MUTS_GEOTN RecName: Full=DNA mismatch repair protein mutS gi|134266339|gb|ABO66534.1| DNA mismatch repair protein MutS [Geobacillus thermodenitrificans NG80-2] Length = 910 Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust. Identities = 288/827 (34%), Positives = 467/827 (56%), Gaps = 44/827 (5%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + S TPM++QY+ IK+ PD+ +F+R+GDFYE+FFDDA+ A++ L ITLT R + + Sbjct: 2 MPSYTPMIQQYLHIKAQYPDAFLFFRLGDFYEMFFDDAIKAAQELEITLTSRDGGGDERV 61 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A YI++L++ G+++AICEQ+E P AK +VRR VV+LVTPGTL E Sbjct: 62 PMCGVPYHSAQGYIEQLVEKGYKVAICEQVEDPKTAK-----GVVRREVVQLVTPGTLME 116 Query: 142 DQLLSPTDSNYLMAVARIR-TEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIF 199 + L+ +++YL + + + +A+ D+STG +++ S+ + +++ I REI+ Sbjct: 117 GKGLTEKENHYLATLTPFADSTYGLAYADLSTGEVRLTLLSSWEETGNELHAIGAREIVI 176 Query: 200 SEKELSHAEY-KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE-K 257 S S E+ + L E G A++ + E+ + D ++ G +Q + + Sbjct: 177 SSD--SAEEWVRELKERYG-AAISYED--------ETWLRDEWS----SVAGHVTQEKLR 221 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLK 316 A + Y+ +TQ + E + + +D ++ +LE++ T+ S R+ SLL Sbjct: 222 VTVARLLHYLVRTQKRQLDHLQPAELYQVDQYMKMDRHSKLHLELVETVRSKGRKGSLLW 281 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D ++T GGRL + + PL D I RLD + + + ++ L+ D+ R Sbjct: 282 LLDETVTAMGGRLLKQWLDRPLIDQRAIERRLDFVETLKTSYFERHELRDRLRDVYDIER 341 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEKLKKLPQSLEKT 434 + R+ G +D+ ++ + ++ L E EL G ++ ++L LE+ Sbjct: 342 LVGRIAYGNANARDLVQLKKSLSQVPSLRQTVSGLPLAEVDELVGRLDPCEELVDLLERA 401 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + + P ++G ++DG D LD R K IA L+ K E T IK+LK+ Sbjct: 402 IQ----EQPPLSIKEGNIIKDGYDERLDRYRDASRNGKAWIAELEAKEREVTGIKSLKVG 457 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+IEVT + ++ + R+ +QT++N RF T EL + E I A + Sbjct: 458 YNRVFGYYIEVTKPNLPLI-----PEGRYERKQTLANAERFITAELKEKEALILEAEEKS 512 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E E F + + E L ++ IA +D+ ALA ++ E+ Y RP + Sbjct: 513 VELEYELFVAIREQVKEYIPRLQTLAKAIAELDVLQALATVSDERRYVRPQFSTERVLAI 572 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 + GRHP+VEK L Q+ ++ NDC ++ ++ L+TGPNM GKST++RQ AL Sbjct: 573 EGGRHPVVEKVLGAQT---YVPNDCYMN-----REREMLLITGPNMAGKSTYMRQVALTA 624 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMAQ+G +VPA A + I D++F+R+G+AD+L++G+STFMVEM+E + AT S ++ Sbjct: 625 IMAQIGCFVPAERAVLPIFDQVFTRIGAADDLSAGQSTFMVEMLEARRAITHATQNSLIL 684 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 DEIGRGT+T DG+++A A IEY+H+ + L +TH+HELT L SL+R N + + Sbjct: 685 FDEIGRGTSTYDGMALAQAMIEYIHDHIGAKTLFSTHYHELTALESSLERLCNVHARAVE 744 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 N ++FLH++ G AD SYGI V +LAGLP ++I RA DIL E+ Sbjct: 745 ENGKVVFLHQIADGPADRSYGIHVAELAGLPISLIERARDILAKLEQ 791 >gi|21242056|ref|NP_641638.1| DNA mismatch repair protein MutS [Xanthomonas axonopodis pv. citri str. 306] gi|44888225|sp|Q8PMX2|MUTS_XANAC RecName: Full=DNA mismatch repair protein mutS gi|21107459|gb|AAM36174.1| DNA mismatch repair protein [Xanthomonas axonopodis pv. citri str. 306] Length = 902 Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust. Identities = 299/912 (32%), Positives = 491/912 (53%), Gaps = 56/912 (6%) Query: 8 PQKLYSEQIDLEENLKSS------TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALL 61 P++ + + D +E K++ TP+M+Q+ KS PD L+F+RMGDFYELF+DDA Sbjct: 25 PEEHFLQSTDPKEKTKNAGGAVEHTPLMKQFFAAKSDYPDLLLFFRMGDFYELFYDDARK 84 Query: 62 ASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRG 121 A+R L ITLT+RG G IPM GVPVH Y+ +L+ +G +AICEQI P AK Sbjct: 85 AARLLDITLTQRGSSGGAPIPMAGVPVHAYEGYLARLVALGESVAICEQIGDPALAK--- 141 Query: 122 NKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TS 180 LV R VVR+VTPGT+T++ LL LMA++R + + +AW D++ G F ++ Sbjct: 142 --GLVERKVVRIVTPGTVTDEALLDERRDTLLMAISRSKQGYGLAWADLAGGRFLVNEVD 199 Query: 181 NHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIAD 239 + D L ++I R++P E++ +++ + G + V + P FD ++ Sbjct: 200 SADALEAEIARLEPAELLVPDED----NWPEFLR--GRIGVRRRPPWLFDADSGRRQLLA 253 Query: 240 YYNITTVDTFG-SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARS 298 ++ + + FG AA A + Y+++TQ P + E + +++A R Sbjct: 254 FFKLHDLSGFGIDDKPCATAAAGALLGYVEETQKQRLPHLTSIAMEVASEAISMNAATRR 313 Query: 299 NLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP 358 +LE+ + G +LL +D ++T GGRL + PL + R ++ I Sbjct: 314 HLELDTRVDGDTRNTLLGVLDSTVTPMGGRLLRRWLHRPLRLRDVLVQRHHAVGTLIDAA 373 Query: 359 ILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELR 418 + +++ ++ D+ R L+R+ + P+D + +RDG+ + + D P Sbjct: 374 ADAD-LREAFRALGDLERILTRVALRSARPRDFSTLRDGLALLPKVRAILAPLDSP---- 428 Query: 419 GAVEKLKKLPQSLEK------TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSK 472 +L+ L L + L S +++ P DGG + G DA LDE R L + Sbjct: 429 ----RLQALHAELGEHDATAHLLISAVAETPPLKLSDGGVIATGYDADLDELRRLSTNAD 484 Query: 473 RIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNL 532 + + L+ + + I LK+ +N GY+IE++ A ++ + RQT++N Sbjct: 485 QFLIDLEQRERASSGIATLKVGYNRVHGYYIEISKGQAE------KAPLHYSRRQTLTNA 538 Query: 533 TRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIAL 592 R+ T EL E+++ +A +L E +E L +A+ + E L + ++ +D+ Sbjct: 539 ERYITEELKSFEDKVLSARERSLSREKLLYEGLLDALGTELEGLKRCAGALSELDVLAGF 598 Query: 593 AILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKL 652 A A+ ++ +P +D++ ++ GRHP+VE +Q PF ND DL +D+ ++ Sbjct: 599 AERAQALDWSQPELDSAPCLRIERGRHPVVEAVREQ----PFEPNDLDLH--SDR---RM 649 Query: 653 WLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRST 712 ++TGPNMGGKST++RQNALIV++A +GSYVPAS A IG +D++ +R+G+ D+LA G+ST Sbjct: 650 LVITGPNMGGKSTYMRQNALIVLLAHIGSYVPASRAVIGPIDRILTRIGAGDDLARGQST 709 Query: 713 FMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHF 772 FMVEM ET+ IL+ AT QS V++DEIGRGT+T DGL++A A +L +TNRC L ATH+ Sbjct: 710 FMVEMAETSYILHHATPQSLVLMDEIGRGTSTYDGLALADAVARHLAQTNRCYTLFATHY 769 Query: 773 HELTDLSKS-----LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNT 827 ELT L+ + N L + E ++F+H V G A+ S+G+QV LAGLP Sbjct: 770 FELTALADASHAGGASGIANVHLDAVEHGERLVFMHAVKDGPANRSFGLQVAALAGLPKA 829 Query: 828 VISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSP 887 +++A L E+ + ++ + + + E ++ L+ DE++P Sbjct: 830 AVTQARRRLAELEQRGGESHS-AQMAPTALDAPQQFGLFTAPSSAAQEALQALDPDELTP 888 Query: 888 LTALKTLYAVKA 899 AL+ LY +KA Sbjct: 889 KQALEALYRLKA 900 >gi|110636573|ref|YP_676780.1| DNA mismatch repair protein MutS [Cytophaga hutchinsonii ATCC 33406] gi|123059063|sp|Q11YS6|MUTS_CYTH3 RecName: Full=DNA mismatch repair protein mutS gi|110279254|gb|ABG57440.1| DNA mismatch repair protein MutS [Cytophaga hutchinsonii ATCC 33406] Length = 856 Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust. Identities = 289/825 (35%), Positives = 467/825 (56%), Gaps = 44/825 (5%) Query: 29 MRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPV 88 M+QY IK P +L+ +R+GDFYE F +DA+ AS+ LGITLTKRG + + G P Sbjct: 1 MKQYNAIKGKYPGALLLFRVGDFYETFSEDAIKASKVLGITLTKRGNGTASETALAGFPH 60 Query: 89 HTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPT 148 H+ + Y+ +L++ G R+AIC+Q+E P + K +V+R V LVTPG D +L + Sbjct: 61 HSLDTYLPRLVRSGLRVAICDQLEDP-----KSVKGIVKRGVTELVTPGVSFNDHVLDVS 115 Query: 149 DSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHAE 208 +NYL A+ + I+++DISTG F + + + + P E++F +++ Sbjct: 116 KNNYLAAIHFQKDSLGISFLDISTGEFLTAQGDRHYIDKLLQSFSPSEVLFCKQK----- 170 Query: 209 YKSLF-ETLGNV--AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK-TAAAAAI 264 K +F E G+ A + F + + + ++ T++ FG +E T+A A + Sbjct: 171 -KEVFIEYFGDRYNTYALEDWIFAYDFTYDLLIRHFQTTSLKGFGIEEMLEGITSAGAIL 229 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEIL--RTLSGSREQSLLKTIDYSI 322 Y+ +T+ I R + + +++D NLE++ + L G L++ +D++ Sbjct: 230 HYLNETEHKEVAHITRVNRIEEERYVWLDRFTIRNLELVNAQQLEGV---PLIEILDHTK 286 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G RL + + PL + T I RLD++ ++N L + LK D+ R +S++ Sbjct: 287 TPMGARLLKKWLILPLKELTPIQERLDTVELLVKNKELTTTLVDELKPIGDLERLISKVA 346 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 R P+++ ++ + + I L + D L+ A E++ + L + +ML +D Sbjct: 347 ARRVNPREMVQLKRSLERLVPIQQLLKQQDQHVLLKLA-EQINPC-EYLAGRILNMLKED 404 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P G +RDG +A LDE R++ K + +Q + E T I +LKI +N GY+ Sbjct: 405 APMLTNQGRIIRDGCNAELDELRAIAYTGKDYLLQIQQREIERTGISSLKISYNKVFGYY 464 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 +EVT++ + D +I +QT++ R+ T EL E +I A + +IE + F Sbjct: 465 LEVTNTHKEKVPAD------WIRKQTLTGAERYITEELKIYEEKILGAEDKINVIEQKMF 518 Query: 563 EILSNAIIEQSESLDNA----SQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + L + ++ES N ++++A ID + A A NYC+PI+++S +K GR Sbjct: 519 QDL----VLEAESYINPILQNARIVAQIDCLCSFAHAAVANNYCKPIVEDSALINIKAGR 574 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP++EK L S +I ND L D + ++ ++TGPNM GKS LRQ ALIV+MAQ Sbjct: 575 HPVIEKQLPLGES--YIPNDIYL----DDETQQVMIITGPNMAGKSALLRQTALIVLMAQ 628 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 GS+VPA++A IG VDK+F+RVG++DNL+ G STFMVEM ETASILN + +S V++DEI Sbjct: 629 AGSFVPATHATIGTVDKVFTRVGASDNLSKGESTFMVEMNETASILNNLSGRSLVLMDEI 688 Query: 739 GRGTATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 GRGT+T DG+SIAWA +E+LH R + L ATH+HEL L++ LKR N + V ++ Sbjct: 689 GRGTSTYDGISIAWAIVEHLHNHPNFRPKTLFATHYHELNQLTEDLKRVKNFNVSVKEAG 748 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 +IF+ + PG ++HS+GI V ++AG+P +++ RA +I+ EK Sbjct: 749 NKVIFMRTLKPGGSEHSFGIHVAQMAGMPTSLVLRANEIMGHLEK 793 >gi|289829410|ref|ZP_06547022.1| DNA mismatch repair protein MutS [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 841 Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust. Identities = 304/892 (34%), Positives = 478/892 (53%), Gaps = 73/892 (8%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IPM G+P Sbjct: 1 MMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPMAGIP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT++++ LL Sbjct: 61 HHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTISDEALLQE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKELSH 206 N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++++E Sbjct: 116 RQDNLLAAIWQDGKGYGYATLDISSGRFRLSEPADRETMAAELQRTNPAELLYAE---DF 172 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT-----AAA 261 AE +L E + ++ I +R T D G F VE AA Sbjct: 173 AEM-ALIEG---RRGLRRRPLWEFEIDTARQQLNLQFGTRDLVG-FG-VENASRGLCAAG 226 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 + Y+K TQ + P I E Q ++ +D+A R NLEI + L+G E +L +D + Sbjct: 227 CLLQYVKDTQRTSLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGVENTLAAVLDCT 286 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +T G R+ + P+ ++ + R +I ++ +Q +L+ D+ R L+RL Sbjct: 287 VTPMGSRMLKRWLHMPVRNTDILRERQQTIGALQDT---VSELQPVLRQVGDLERILARL 343 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP-QSLEKT------ 434 + P+D+A +R + LPE L +E + P Q+L K Sbjct: 344 ALRTARPRDLARMRHAFQQ------------LPE-LHAQLETVDSAPVQALRKKMGDFAE 390 Query: 435 ----LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L + D P RDGG + G LDE R+L D + + L+++ E T + Sbjct: 391 LRDLLERAIIDAPPVLVRDGGVIAPGYHEELDEWRALADGATDYLDRLEIRERERTGLDT 450 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ +N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + Sbjct: 451 LKVGYNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPELKEYEDKVLTS 504 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 AL + ++ L + ++ L ++ +A +D+ + LA A NY P + Sbjct: 505 KGKALALGKTLYDELFDLLLPHLADLQQSANALAELDVLVNLAERAWTLNYTCPTFTDKP 564 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNMGGKST++RQ Sbjct: 565 GIRITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQT 615 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT Sbjct: 616 ALIALLAYIGSYVPAQNVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEN 675 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L Sbjct: 676 SLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHL 735 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH---NQ 847 + + I F+H V G A SYG+ V LAG+P VI RA L+ E + + Q Sbjct: 736 DALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESISPNAAATQ 795 Query: 848 KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 D T+ S + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 796 VD--------GTQMSLLAAPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 839 >gi|163786474|ref|ZP_02180922.1| DNA mismatch repair protein [Flavobacteriales bacterium ALC-1] gi|159878334|gb|EDP72390.1| DNA mismatch repair protein [Flavobacteriales bacterium ALC-1] Length = 870 Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust. Identities = 302/889 (33%), Positives = 485/889 (54%), Gaps = 34/889 (3%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TP+M+QY IK PD+L+ +R+GDFYE F DA+ AS+ L I LTKRG + Sbjct: 6 KKVTPLMKQYNAIKVKYPDALLLFRVGDFYETFGSDAVKASKILDIILTKRGAGSESETE 65 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 + G P H+ N Y+ KL++ G R+AIC+Q+E P + K++V+R V LVTPG D Sbjct: 66 LAGFPHHSLNTYLPKLVRAGERVAICDQLEDP-----KQTKTIVKRGVTELVTPGVALND 120 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK 202 +L +N+L AV + ++++DISTG F S + + + + +P E++ S++ Sbjct: 121 DILHSKSNNFLCAVHFDKKYIGVSFLDISTGEFLTSQGDAEYIDKLLQNFNPSEVLISKQ 180 Query: 203 ELSHAEYKSLFETLGN--VAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT-A 259 K ET GN + F + + ++N TT+ FG E A Sbjct: 181 S-----RKEFTETFGNDFHTFYLEDWVFQADYANETLIKHFNTTTLKGFGIEDLYEGVIA 235 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 + + Y+ +T+ I R +++D NLE+ + + + +L+ ID Sbjct: 236 SGVVLHYLSETRHNKLEHIATISRIATDDYVWMDKFTIRNLELYNS-TNTNAVTLINVID 294 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 +I+ GGR +A PL + KI R + + + + N ++ Q +K D+ R +S Sbjct: 295 KTISAMGGRTLKRWLALPLKHADKIKQRHEVVQYLLDNESVLQKNQGQIKHIGDIERLIS 354 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 ++ + P+++ +++ + + + I ++ D E LR E L EK + L Sbjct: 355 KIATTKVSPREVIQLKNSLEAIVPIKSIAESCD-NEALRVLGESLNNCDLLREK-IKQTL 412 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 +++ P G + +G LDE R L K + ++ + +E T I +LKI NN Sbjct: 413 NEEAPVNILKGNTIAEGFSQELDELRGLSKSGKDYLDNMLQRESERTGITSLKIASNNVF 472 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IEV +S KD + + ++ +QT+ N R+ T EL + E +I A L IE Sbjct: 473 GYYIEVRNSH-----KD-KVPEEWVRKQTLVNAERYITEELKEYEAKILGAEERILAIEQ 526 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 + F L + + + +Q+I +D A LAK Y P ID+S + +KDGRH Sbjct: 527 QLFVELVTWMHQFIIQVQQNAQLIGQLDCLCGFASLAKTNKYIYPQIDDSFDLEIKDGRH 586 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P++EK L +P+IAND L D+ + ++ ++TGPNM GKS LRQ ALIV++AQ+ Sbjct: 587 PVIEKQLPL--GEPYIANDVFL----DRETQQIIMITGPNMSGKSAILRQTALIVLLAQI 640 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPA A IG+VDK+F+RVG++DN++ G STFMVEM ETASILN + +S V+LDEIG Sbjct: 641 GSFVPARDARIGLVDKIFTRVGASDNISMGESTFMVEMNETASILNNISQRSLVLLDEIG 700 Query: 740 RGTATLDGLSIAWATIEYLHE-TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 RGT+T DG+SIAWA EYLHE + + L ATH+HEL +++++ R N + V + + Sbjct: 701 RGTSTYDGISIAWAISEYLHEHPAKPKTLFATHYHELNEMTETFSRIKNFNVSVKELKDN 760 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 ++F+ K++ G ++HS+GI V K+AG+P VI RA IL EK H+ +++ ++ Sbjct: 761 VLFVRKLVEGGSEHSFGIHVAKMAGMPQQVIRRANKILSKLEK--SHSSEELTDKVKSLK 818 Query: 859 TKESKNNLSKNDKLFVE---KIKCLNLDEMSPLTALKTLYAVKAWTLEK 904 + + +D L E +I ++D ++P+ AL L +K ++K Sbjct: 819 DDLQLSFFNLDDPLLEEIKDEILHTDIDTLTPVEALMKLNEIKRMLVKK 867 >gi|196247548|ref|ZP_03146250.1| DNA mismatch repair protein MutS [Geobacillus sp. G11MC16] gi|196212332|gb|EDY07089.1| DNA mismatch repair protein MutS [Geobacillus sp. G11MC16] Length = 909 Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust. Identities = 288/827 (34%), Positives = 467/827 (56%), Gaps = 44/827 (5%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + S TPM++QY+ IK+ PD+ +F+R+GDFYE+FFDDA+ A++ L ITLT R + + Sbjct: 1 MPSYTPMIQQYLHIKAQYPDAFLFFRLGDFYEMFFDDAIKAAQELEITLTSRDGGGDERV 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A YI++L++ G+++AICEQ+E P AK +VRR VV+LVTPGTL E Sbjct: 61 PMCGVPYHSAQGYIEQLVEKGYKVAICEQVEDPKTAK-----GVVRREVVQLVTPGTLME 115 Query: 142 DQLLSPTDSNYLMAVARIR-TEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIF 199 + L+ +++YL + + + +A+ D+STG +++ S+ + +++ I REI+ Sbjct: 116 GKGLTEKENHYLATLTPFADSTYGLAYADLSTGEVRLTLLSSWEETGNELHAIGAREIVI 175 Query: 200 SEKELSHAEY-KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE-K 257 S S E+ + L E G A++ + E+ + D ++ G +Q + + Sbjct: 176 SSD--SAEEWVRELKERYG-AAISYED--------ETWLRDEWS----SVAGHVTQEKLR 220 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLK 316 A + Y+ +TQ + E + + +D ++ +LE++ T+ S R+ SLL Sbjct: 221 VTVARLLHYLVRTQKRQLDHLQPAELYQVDQYMKMDRHSKLHLELVETVRSKGRKGSLLW 280 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D ++T GGRL + + PL D I RLD + + + ++ L+ D+ R Sbjct: 281 LLDETVTAMGGRLLKQWLDRPLIDQRAIERRLDFVETLKTSYFERHELRDRLRDVYDIER 340 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEKLKKLPQSLEKT 434 + R+ G +D+ ++ + ++ L E EL G ++ ++L LE+ Sbjct: 341 LVGRIAYGNANARDLVQLKKSLSQVPSLRQTVSGLPLAEVDELVGRLDPCEELVDLLERA 400 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + + P ++G ++DG D LD R K IA L+ K E T IK+LK+ Sbjct: 401 IQ----EQPPLSIKEGNIIKDGYDERLDRYRDASRNGKAWIAELEAKEREVTGIKSLKVG 456 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+IEVT + ++ + R+ +QT++N RF T EL + E I A + Sbjct: 457 YNRVFGYYIEVTKPNLPLI-----PEGRYERKQTLANAERFITAELKEKEALILEAEEKS 511 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E E F + + E L ++ IA +D+ ALA ++ E+ Y RP + Sbjct: 512 VELEYELFVAIREQVKEYIPRLQTLAKAIAELDVLQALATVSDERRYVRPQFSTERVLAI 571 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 + GRHP+VEK L Q+ ++ NDC ++ ++ L+TGPNM GKST++RQ AL Sbjct: 572 EGGRHPVVEKVLGAQT---YVPNDCYMN-----REREMLLITGPNMAGKSTYMRQVALTA 623 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMAQ+G +VPA A + I D++F+R+G+AD+L++G+STFMVEM+E + AT S ++ Sbjct: 624 IMAQIGCFVPAERAVLPIFDQVFTRIGAADDLSAGQSTFMVEMLEARRAITHATQNSLIL 683 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 DEIGRGT+T DG+++A A IEY+H+ + L +TH+HELT L SL+R N + + Sbjct: 684 FDEIGRGTSTYDGMALAQAMIEYIHDHIGAKTLFSTHYHELTALESSLERLCNVHARAVE 743 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 N ++FLH++ G AD SYGI V +LAGLP ++I RA DIL E+ Sbjct: 744 ENGKVVFLHQIADGPADRSYGIHVAELAGLPISLIERARDILAKLEQ 790 >gi|93117337|gb|ABE99586.1| MutS [Neisseria meningitidis] Length = 864 Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust. Identities = 306/893 (34%), Positives = 475/893 (53%), Gaps = 62/893 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM+QY+ IK+ + D LVFYRM DFYE+FFDDA+ A++ L ITLT RG+ G+ + M G Sbjct: 7 SPMMQQYLGIKAQHTDKLVFYRMDDFYEMFFDDAVEAAKLLDITLTTRGQVDGEPVKMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ +L+K+G +AICEQ+ + K V R VVR+VTPGTLT+ LL Sbjct: 67 VPFHAAEQYLARLVKLGKSVAICEQV-----GEVGAGKGPVERKVVRIVTPGTLTDSALL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 ++N ++AV+ + +AW + +G FK + D+L ++ R+ EI+ + Sbjct: 122 EDKETNRIVAVSPDKKYIGLAWASLQSGEFKTKLTTVDKLDDELARLQAAEILLPDS--- 178 Query: 206 HAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQ---VEKTAAA 261 K+ + V + N + F E + +Y+ + FG + V AA Sbjct: 179 ----KNAPQLQTASGVTRLNAWQFAADAGEKLLTEYFGCQDLRGFGLDGKEHAVAIGAAG 234 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 A ++YI+ TQ + + E + +D+A R NLEI +TLSG + +L+ T+D Sbjct: 235 ALLNYIRLTQNLMPQHLDGLSLETDSQYIGMDAATRRNLEITQTLSGKKSPTLMSTLDLC 294 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G RL A + PL + I R +++ P+Q LK+ D+ R +R+ Sbjct: 295 ATHMGSRLLALWLHHPLRNRAHIRARQEAVAALESQ---YKPLQCRLKNIADIERIAARI 351 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL-PQSLE--KTLSSM 438 +G P+D+A +RD + I DL +E LK + P++L + L Sbjct: 352 AVGNARPRDLASLRDSLFELAQI-------DLSANGSSLLETLKAVFPENLSTAEQLRQA 404 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + + + +DG + G LDE R +++ + L+ K E T + LK++ N Sbjct: 405 ILPEPSVWLKDGNVINHGFHPELDELRRIQNHGDEFLLDLEAKERERTGLSTLKVEFNRV 464 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 G++IE++ + A D + RQT+ N RF T EL E+++ A AL +E Sbjct: 465 HGFYIELSKTQAEQAPAD------YQRRQTLKNAERFITPELKAFEDKVLTAQEQALALE 518 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F+ + + L A++ A +D+ + LAKE+N+ RP + +++GR Sbjct: 519 KQLFDGVLKNLQTALPQLQKAAKAAAALDVLSTFSALAKERNFVRPEFADYPAIHIENGR 578 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ ++ F AN +L + +L LLTGPNMGGKST++RQ ALIV++A Sbjct: 579 HPVVEQQVRH-----FTANHTNLD-----HKHRLMLLTGPNMGGKSTYMRQVALIVLLAH 628 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 G +VPA A IG +D++F+R+G++D+LAS RSTFMVEM ETA IL+ AT QS V++DE+ Sbjct: 629 TGCFVPADAATIGPIDQIFTRIGASDDLASNRSTFMVEMSETAYILHHATEQSLVLMDEV 688 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGL++A A E+L + N+ L ATH+ ELT L ++ N L + + Sbjct: 689 GRGTSTFDGLALAHAVAEHLLQKNKSFSLFATHYFELTYLPEAHAAAVNMHLSALEQGQD 748 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 I+FLH++ PG A SYGI V KLAGLP + A L E N+ + ++ Sbjct: 749 IVFLHQIQPGPAGKSYGIAVAKLAGLPVRALKSAQKHLNGLENQAAANRPQLDIF----S 804 Query: 859 TKESKNNLSKNDKLFVEK-------------IKCLNLDEMSPLTALKTLYAVK 898 T S+ N FV+K ++ L+ D ++P AL LY +K Sbjct: 805 TMPSEKGDEPNVGNFVDKAEEKHFEGILAAALEKLDPDSLTPREALSELYRLK 857 >gi|189347201|ref|YP_001943730.1| DNA mismatch repair protein MutS [Chlorobium limicola DSM 245] gi|254766620|sp|B3EEE1|MUTS_CHLL2 RecName: Full=DNA mismatch repair protein mutS gi|189341348|gb|ACD90751.1| DNA mismatch repair protein MutS [Chlorobium limicola DSM 245] Length = 871 Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust. Identities = 298/881 (33%), Positives = 474/881 (53%), Gaps = 40/881 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K +PMMRQY+++K PD L+ +R+GDFYE FFDDA + L I LT+R +IP Sbjct: 9 KEHSPMMRQYLDVKDRYPDYLLLFRVGDFYETFFDDAREVAAALNIVLTRRSN----EIP 64 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M G P H + YI KL+K G+++A+C+Q+E P AK +VRR + ++TPG D Sbjct: 65 MAGFPHHASEGYIAKLVKKGYKVAVCDQVEDPAVAK-----GIVRREITDIITPGVTYSD 119 Query: 143 QLLSPTDSNYLMAVARIR----TEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREII 198 +L +NYL A+ +R T A+ID++TG F+I+ + + + P E++ Sbjct: 120 SILDDRHNNYLCAIVFLRVGRQTVCGAAFIDVTTGEFRIAGLLPEDASVFLRSLHPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ-VEK 257 S + +E G F + +A + ++ FG + Sbjct: 180 VSAADRERSETLRHALPAGTAFTVLDEWLFREEQAGEILARQFRTHSLKGFGIHDNPAGQ 239 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPER-EDIQST--LFIDSAARSNLEILRTLS-GSREQS 313 AA + Y+++T+ + ++ Y R +QS + +D + NLEI+ ++ GS S Sbjct: 240 VAAGVILHYLEETR---QSSLQYITRITPLQSGDYMTLDLQTKRNLEIISSMQDGSINGS 296 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL+ ID + G RL + + PL + I RLD+++ + + L D Sbjct: 297 LLQVIDRTRNPMGARLLRQWLQRPLLRAADITMRLDAVDELKKMKPFRESVCCDLGQISD 356 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R+L+R+ R P+++ + + + I +L ++ + + L + L LP L Sbjct: 357 LERALARIATLRAIPREVRQLGSAL-AVIPLLKQSFQDTVSKRLCSIADALMPLP-DLVA 414 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + S + + RDGG++R G LD+ R +K + +Q + E T I +LK+ Sbjct: 415 MIESAVDPEAGASMRDGGYIRKGYHQELDDLRQTASTAKERLLEIQQEERERTAIGSLKV 474 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 + N GY+IE++ ++ + E K QT+ N RFT L + E +I NA Sbjct: 475 QFNRVFGYYIEISKANRDKVPPYYEKK------QTLVNAERFTIPALKEYEEKILNAEER 528 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 +L++E + F+ L I +E + + +IA ID A A+ A E YC+P+I T Sbjct: 529 SLVLEQQLFQALCCRIAGHAEVIQENAALIAEIDCLAAYAVCADEYGYCKPLIAEHTGLR 588 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + +GRHP++E+ L + +P+IAND + +D+ K+ ++TGPNM GKS++LRQ LI Sbjct: 589 ILNGRHPVLERILP--ADEPYIAND---ALFDDRQ--KMLMITGPNMAGKSSYLRQTGLI 641 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 V++AQ G +VPA A IG+VD++F+RVG++DNLASG STF+VEM E A ILN AT +S + Sbjct: 642 VLLAQAGCFVPAEQAEIGVVDRIFTRVGASDNLASGESTFLVEMNEAADILNNATAKSLL 701 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 +LDEIGRGT+T DGL+IAW+ EY+H R L ATH+HEL +L L N V Sbjct: 702 LLDEIGRGTSTYDGLAIAWSMCEYIHRQIGARTLFATHYHELAELEGLLPGVVNYNASVL 761 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 +S + +IFL K++ G +D+SYGI+V +++G+P+ VI+RA IL EK L Sbjct: 762 ESGDRVIFLRKIVRGASDNSYGIEVARMSGMPSAVITRAKAILAGMEKRDIATPSSSGLS 821 Query: 854 YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 +Q + + D I+ +++D M+PL AL L Sbjct: 822 LQSMQI----SLFDEIDTRLRTAIEVIDIDRMTPLDALVEL 858 >gi|161524361|ref|YP_001579373.1| DNA mismatch repair protein MutS [Burkholderia multivorans ATCC 17616] gi|189350884|ref|YP_001946512.1| DNA mismatch repair protein MutS [Burkholderia multivorans ATCC 17616] gi|160341790|gb|ABX14876.1| DNA mismatch repair protein MutS [Burkholderia multivorans ATCC 17616] gi|189334906|dbj|BAG43976.1| DNA mismatch repair protein [Burkholderia multivorans ATCC 17616] Length = 884 Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust. Identities = 309/901 (34%), Positives = 468/901 (51%), Gaps = 55/901 (6%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 + + S TPMM+QY+ IK+ +PD+LVFYRMGDFYELFF+DA A+R L +TLT+RG G Sbjct: 7 DAIASHTPMMQQYLRIKAEHPDTLVFYRMGDFYELFFEDAEKAARLLDLTLTQRGASAGN 66 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 I M GVP H Y+ KL+K+G +AICEQI P +K V R VVR+VTPGTL Sbjct: 67 PIKMAGVPHHAVEQYLAKLVKMGESVAICEQIGDPAT-----SKGPVERKVVRVVTPGTL 121 Query: 140 TEDQLLSPTDSNYLMAVAR------IRTEWAIAWIDISTGIFKISTSNHDRLISDIMRID 193 T+ LLS + YL+A+ + +AW+++++G +++ D+L + + RI Sbjct: 122 TDAALLSDKNDVYLLAMCTGHNKRGVAINIGLAWLNLASGALRLAEIEPDQLGAALERIR 181 Query: 194 PREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS 253 P EI+ ++ + L V P FD + R+ + ++ ++D FG+ S Sbjct: 182 PAEILTADGATDAIPAGA--GALKRV----PTWHFDIASGTQRLCEQLDVASLDGFGAHS 235 Query: 254 QVEKTAAAAAISYIKK-TQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 AA A+ TQ + + E+ + +D A R NLE+ TL G+ Sbjct: 236 LTSACGAAGALLLYAAATQGQQLRHVRSLKVENESEYIGLDPATRRNLELTETLRGTESP 295 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPI--LINPIQKILKS 370 +L +D T G RL + P S +R +I + P ++ ++ L+ Sbjct: 296 TLYSLLDTCCTTMGSRLLRHWLHHPPRASVAAQSRQQAIGALLDAPADASLDALRSALRQ 355 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS 430 DV R RL + P+D++ +RD + + L +K + A P + Sbjct: 356 IADVERITGRLALLSARPRDLSSLRDTF-AALPALRERIKPIVANADALARLDAALAPPA 414 Query: 431 -LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 L++ ++ + RDGG + G DA LDE R + + + + L+ + T I Sbjct: 415 ECLDLLTNAIAPEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLEARERARTGIA 474 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 NL++++N G++IEVT + D + RQT+ N R+ T EL E++ + Sbjct: 475 NLRVEYNKVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTFEDKALS 528 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 A AL E ++ + A++ + +A +D+ A A A+ ++ P + Sbjct: 529 AQERALSRERALYDSVLQALLPFIPECQRVASALAELDLLAAFAERARALDWVAPTFTDE 588 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 ++ GRHP+VE ++Q FIANDC KL L+TGPNMGGKSTF+RQ Sbjct: 589 VGIEIEQGRHPVVEAQVEQ-----FIANDCRFGAER-----KLLLITGPNMGGKSTFMRQ 638 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI +MA +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+ILN AT Sbjct: 639 TALIALMAYVGSYVPAKSARFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILNDATP 698 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 QS V++DEIGRGT+T DGL++AWA +L N C L ATH+ ELT L + N Sbjct: 699 QSLVLMDEIGRGTSTFDGLALAWAIARHLLAHNGCYTLFATHYFELTQLPIEFPQAANVH 758 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 L + GI+FLH V G A+ SYG+QV +LAG+P VI A + L H Q+ Sbjct: 759 LSAVEHGHGIVFLHAVNEGPANQSYGLQVAQLAGVPAPVIRAAR------KHLAHLEQQS 812 Query: 850 MRLYYPEI---QTKESKNNLSKNDKLFV--------EKIKCLNLDEMSPLTALKTLYAVK 898 P++ + + +L D V EK++ ++ D++ P AL LY ++ Sbjct: 813 AAQQTPQLDLFSAQPAPGDLECADAPVVPDAPHPALEKLREIDPDDLKPREALDLLYELR 872 Query: 899 A 899 A Sbjct: 873 A 873 >gi|327312778|ref|YP_004328215.1| DNA mismatch repair protein MutS [Prevotella denticola F0289] gi|326945312|gb|AEA21197.1| DNA mismatch repair protein MutS [Prevotella denticola F0289] Length = 887 Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust. Identities = 288/832 (34%), Positives = 463/832 (55%), Gaps = 34/832 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD-I 81 K TPMM+Q+ +K+ +P +L+ +R GDFYE + +DA+ +++ LGITLT+R D I Sbjct: 6 KGLTPMMKQFFSMKAQHPGALMLFRCGDFYETYGEDAVESAKILGITLTRRNNGGNCDSI 65 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKK--RGNKSL------VRRNVVRL 133 M G P H + Y+ KLI+ G R+AIC+Q+E P + ++ +G K L V+R + L Sbjct: 66 EMAGFPHHALDTYLPKLIRAGKRVAICDQLEDPKKKREAIKGKKGLSAMDKMVKRGITEL 125 Query: 134 VTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRID 193 VTPG D +L+ ++N+L AV + ++++DISTG F D + + Sbjct: 126 VTPGVALSDNVLNYKENNFLAAVHFGKGACGVSFLDISTGEFLTGEGTFDYVEKLLGNFQ 185 Query: 194 PREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS 253 P+E++F + +++ F T VF D + + ++ ++ + FG Sbjct: 186 PKEVLFDRAK--KQDFERYFGTRLCTFEMDDWVFTDQT-ARQKLLKHFGTKNLKGFGVDH 242 Query: 254 QVEKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 AA AI Y++ TQ + I R + + +D +LE++ ++ Sbjct: 243 LHNGVVAAGAILQYLEITQHTHINHITSLARIEEDKYVRMDRFTIRSLELIAPMN-EDGA 301 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 SLL ID ++T GGR+ + PL D+ IN RLD +++ + P I + Sbjct: 302 SLLDVIDNTVTPMGGRMLRRWMVFPLKDAKPINERLDVVDYLFREPDFRECIDEQFHRIG 361 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLPQS 430 D+ R +S++ +GR P+++ +++ + + + L+ K+ E L+ E+L L +S Sbjct: 362 DLERIISKVAVGRVSPREVVQLKNALMAIQPVKTACLYAKS---ETLKRIGEQLN-LCES 417 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L + + D P G + G D LDE RS+RD K+ + +Q K AE+T I + Sbjct: 418 LRDRIEKEIQPDPPQLAAKGNVIAPGYDRQLDELRSIRDNGKQYLLEIQEKEAEQTGITS 477 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LKI NN GY++EV ++ KD + + +I +QT++ R+ T EL + E +I A Sbjct: 478 LKIGFNNVFGYYLEVRNTF-----KD-KVPENWIRKQTLAQAERYITPELKEYEEKILGA 531 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 L +E + F L + E + + +IA +D ++ ++++Q Y RP++D S Sbjct: 532 DEKILAMEGQLFMELIQDMQEFIPQIQINANLIAHLDCLLSFMKVSQQQRYVRPVVDGSE 591 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 +K GRHP++E L + ++ ND L D ++ ++TGPNM GKS LRQ Sbjct: 592 VLDIKQGRHPVIETQLP--IGEQYVPNDVLL----DTEHQQIMMITGPNMAGKSALLRQT 645 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALIV++AQ+G +VPA A IG+VDK+F+RVG++DN++ G STFMVEM E ++ILN T + Sbjct: 646 ALIVLLAQIGCFVPAERARIGMVDKIFTRVGASDNISLGESTFMVEMTEASNILNNVTPR 705 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNA 788 S V+ DE+GRGT+T DG+SIAWA +EYLHE R R L ATH+HEL ++ KS R N Sbjct: 706 SLVLFDELGRGTSTYDGISIAWAIVEYLHEHPRVQARTLFATHYHELNEMEKSFPRIRNF 765 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + V + + IIFL K+ PG ++HS+GI V ++AG+P +++ RA ILK E Sbjct: 766 NVSVKEVDGKIIFLRKLEPGGSEHSFGIHVAEIAGMPRSIVKRANVILKELE 817 >gi|15217096|gb|AAK92503.1|AF400586_1 mismatch repair protein [Acinetobacter johnsonii] Length = 837 Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust. Identities = 313/865 (36%), Positives = 466/865 (53%), Gaps = 52/865 (6%) Query: 53 ELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIE 112 ELFF+DA A++ LGITLT RGK G+ IPM GVP H A Y+ +L+K G + ICEQI Sbjct: 1 ELFFEDAHKAAKLLGITLTHRGKANGEPIPMAGVPYHAAEGYLARLVKKGETVVICEQI- 59 Query: 113 SPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDIST 172 + K+ V R VVR++TPGTLT+D LL+ S+ L+A+ + E IA +D+S Sbjct: 60 -----GEVTGKAPVERGVVRIITPGTLTDDALLTAHQSSNLVALCVQQNEIGIALLDLSA 114 Query: 173 GIFKISTSNHDRLISDI--MRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDH 230 G+FK+ I R+ P EI+ E + + + + L +PNV F+ Sbjct: 115 GLFKVQQQEFQLEQLGIELSRLMPSEILVDENIVDPNIIEHIKKLLDCPVTRRPNVDFNL 174 Query: 231 SISESRIADYYNITTVDTFG-SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQST 289 + ++ + D + ++T+ FG + K AAA+ I Y K+TQ P I + E Sbjct: 175 NNAQKTLCDQFEVSTLAGFGIDHLPLAKAAAASLIHYAKETQKTALPHIRSIQLEQSSDF 234 Query: 290 LFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLD 349 + +D R NLE++ L SL + I+ T GGRL + + PL D+ ++ RLD Sbjct: 235 IALDPVTRRNLELVEPLF-EHGTSLFQLINDCQTAMGGRLLSRTLMQPLRDTKLLDARLD 293 Query: 350 SINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKD----------IAVIRDGIR 399 + + +PI+ +LK D+ R LSR+ +G P+D I +R I+ Sbjct: 294 ATKSLVDG-YHESPIRLVLKEIGDIERVLSRVALGSARPRDLVQLRQACAQIPYLRHAIQ 352 Query: 400 SGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADA 459 I L L EEL L + L S + + P RDG + +G D Sbjct: 353 PVIQSKQSALITQLNEELGDF--------HGLHQRLMSAIVEHPPVLLRDGNVIAEGFDH 404 Query: 460 SLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLES 519 LDE R +RD + + + L+++ + T I LKI +N GY+IE+T + A ++ Sbjct: 405 ELDELRKIRDHAGQYLIDLEIQERQNTGISTLKIGYNRVSGYYIELTRAQAE------QA 458 Query: 520 KDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNA 579 D +I RQT+ N R+ T EL E+++ ++ + AL E FE+L + + L Sbjct: 459 PDHYIRRQTLKNAERYITPELKTFEDKVLSSESRALAREKMLFEMLLDELRADIGHLQMM 518 Query: 580 SQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDC 639 S IA ID+ A A+ +N+ RP + GRHP+VE K F ND Sbjct: 519 SSAIAQIDLLANFAHQARLRNWSRPEYSPEIGVKIIAGRHPVVEALNK----ATFTPNDT 574 Query: 640 DLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSR 699 L D N ++ ++TGPNMGGKSTF+RQ ALI ++A GSYVPA A +G +D++F+R Sbjct: 575 TL----DFNH-RMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPAQSAVLGPIDRIFTR 629 Query: 700 VGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLH 759 +GSAD+L++G+STFMVEM ET+ IL+ ATNQS V++DE+GRGT+T DGLS+AWA + L Sbjct: 630 IGSADDLSTGKSTFMVEMTETSQILHHATNQSLVLMDEVGRGTSTYDGLSLAWACVLDLT 689 Query: 760 ETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVG 819 + +C L ATH+ ELT+L+K N + + N +I LHKV G A S+G+QV Sbjct: 690 KRIKCLCLFATHYFELTELAKE-TAIDNYHVTAKELNGNLILLHKVQHGPASQSHGLQVA 748 Query: 820 KLAGLPNTVISRAYDILKTFEKLYHHNQKDMR------LYYPEIQTKESKNNLSKNDKLF 873 KLAG+P +VI A + LK EK K ++ + P+++ E + K Sbjct: 749 KLAGIPASVIKEAQNRLKILEKQQLQKPKVVQNDLFAAIETPKLEIIERVVEIEKPSAAL 808 Query: 874 VEKIKCLNLDEMSPLTALKTLYAVK 898 E +K +++D +SP AL+ LYA+K Sbjct: 809 -ELLKSIDVDNLSPREALQQLYALK 832 >gi|221198393|ref|ZP_03571439.1| DNA mismatch repair protein MutS [Burkholderia multivorans CGD2M] gi|221208930|ref|ZP_03581927.1| DNA mismatch repair protein MutS [Burkholderia multivorans CGD2] gi|221171213|gb|EEE03663.1| DNA mismatch repair protein MutS [Burkholderia multivorans CGD2] gi|221182325|gb|EEE14726.1| DNA mismatch repair protein MutS [Burkholderia multivorans CGD2M] Length = 884 Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust. Identities = 308/902 (34%), Positives = 469/902 (51%), Gaps = 57/902 (6%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 + + + TPMM+QY+ IK+ +PD+LVFYRMGDFYELFF+DA A+R L +TLT+RG G Sbjct: 7 DAIANHTPMMQQYLRIKAEHPDTLVFYRMGDFYELFFEDAEKAARLLDLTLTQRGASAGN 66 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 I M GVP H Y+ KL+K+G +AICEQI P +K V R VVR+VTPGTL Sbjct: 67 PIKMAGVPHHAVEQYLAKLVKMGESVAICEQIGDPAT-----SKGPVERKVVRVVTPGTL 121 Query: 140 TEDQLLSPTDSNYLMAVAR------IRTEWAIAWIDISTGIFKISTSNHDRLISDIMRID 193 T+ LLS + YL+A+ + +AW+++++G +++ D+L + + RI Sbjct: 122 TDAALLSDKNDVYLLAMCTGHNKRGVAVNIGLAWLNLASGALRLAEIEPDQLGAALERIR 181 Query: 194 PREIIFSEKELSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFGSF 252 P EI+ ++ G A+ + P FD + R+ + ++ ++D FG+ Sbjct: 182 PAEILTADGATDAI-------PAGAGAIKRVPTWHFDIASGTQRLCEQLDVASLDGFGAH 234 Query: 253 SQVEKTAAAAAISYIKK-TQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 S AA A+ TQ + + E+ + +D A R NLE+ TL G+ Sbjct: 235 SLTSACGAAGALLLYAAATQGQQLRHVRSLKVENESEYIGLDPATRRNLELTETLRGTES 294 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPI--LINPIQKILK 369 +L +D T G RL + P S +R +I + P ++ ++ L+ Sbjct: 295 PTLYSLLDTCCTTMGSRLLRHWLHHPPRASVAAQSRQQAIGALLDAPADASLDALRSALR 354 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 DV R RL + P+D++ +RD + + L +K + A P Sbjct: 355 QIADVERITGRLALLSARPRDLSSLRDTF-AALPALRERIKPIVANADALARLDAALAPP 413 Query: 430 S-LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 + L++ ++ + RDGG + G DA LDE R + + + + L+ + T I Sbjct: 414 AECLDLLTTAIAPEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLEARERARTGI 473 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 NL++++N G++IEVT + D + RQT+ N R+ T EL E++ Sbjct: 474 ANLRVEYNKVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTFEDKAL 527 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 +A AL E ++ + A++ + +A +D+ A A A+ ++ P + Sbjct: 528 SAQERALSRERALYDSVLQALLPFIPECQRVASALAELDLLAAFAERARALDWVAPTFTD 587 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 ++ GRHP+VE ++Q FIANDC KL L+TGPNMGGKSTF+R Sbjct: 588 EVGIEIEQGRHPVVEAQVEQ-----FIANDCRFGAER-----KLLLITGPNMGGKSTFMR 637 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q ALI +MA +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+ILN AT Sbjct: 638 QTALIALMAYVGSYVPAKSARFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILNDAT 697 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA 788 QS V++DEIGRGT+T DGL++AWA +L N C L ATH+ ELT L + N Sbjct: 698 PQSLVLMDEIGRGTSTFDGLALAWAIARHLLAHNGCYTLFATHYFELTQLPLEFPQAANV 757 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 L + GI+FLH V G A+ SYG+QV +LAG+P VI A + L H Q+ Sbjct: 758 HLSAVEHGHGIVFLHAVNEGPANQSYGLQVAQLAGVPAPVIRAAR------KHLAHLEQQ 811 Query: 849 DMRLYYPEI---QTKESKNNLSKNDKLFV--------EKIKCLNLDEMSPLTALKTLYAV 897 P++ + + +L D V EK++ ++ D++ P AL LY + Sbjct: 812 SAAQQTPQLDLFSAQPAPGDLECADAPVVPDAPHPALEKLREIDPDDLKPREALDLLYEL 871 Query: 898 KA 899 +A Sbjct: 872 RA 873 >gi|269926438|ref|YP_003323061.1| DNA mismatch repair protein MutS [Thermobaculum terrenum ATCC BAA-798] gi|269790098|gb|ACZ42239.1| DNA mismatch repair protein MutS [Thermobaculum terrenum ATCC BAA-798] Length = 930 Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust. Identities = 297/828 (35%), Positives = 458/828 (55%), Gaps = 54/828 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 P RQY+E+K P +++ YRMGDFYE F DDA + +R +TLT R +PM G Sbjct: 23 VPSRRQYLELKRKYPHAILLYRMGDFYEAFDDDARVVARDARVTLTSRTFGRSGRVPMAG 82 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H N+Y+ +L+ GH +AI EQ+ P K LV R V R++TPGT+ E LL Sbjct: 83 VPHHALNYYLSRLLNAGHTVAIAEQMSEP-------GKGLVEREVTRVLTPGTVVESALL 135 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKI----STSNHDRLISDIMRIDPREIIFSE 201 ++ YL AV + IAW+D+STG F++ +RL ++ RI P E + E Sbjct: 136 PAGENRYLAAVYDVGARIGIAWVDVSTGEFRLMELRGEDASERLQEELARISPAECLIPE 195 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 Y+ + V + N D ++ + ++ + ++D FG AA Sbjct: 196 G----FPYELVLSQSHATTVRRQNC--DPQVAYQLLCKHFGVRSLDAFGCHDAKASLGAA 249 Query: 262 AAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 AI +YI++T + E + + +D A R NLE+ R+ +G SLL +D Sbjct: 250 GAIYTYIEQTNPSLLCMLTSIRMECAEDMVGMDPATRRNLELTRSFGTGGSRGSLLGVVD 309 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G R I +PL D +I R D I +Q P + I L D+ R++S Sbjct: 310 QTSTPMGSRAMRRLINTPLRDLQEIRRRQDIIEPLVQMPQVRARIANQLVQIGDLERAVS 369 Query: 380 RLKIGRGEPKDIAVIRDG---IRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 R +D + + S + IL+ + L L +++ + + L+ ++ Sbjct: 370 RCTQSGSTLRDFLSLSSALGHVDSLVRILSGTHQQALAN-LASSIDTCEDILSRLQMAVA 428 Query: 437 SMLSDD-----LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 +DD LP GF+ + DA L+E RS R+ +A L+ K E T I++L Sbjct: 429 E--ADDGSPVILP------GFMPELGDA-LEELRSAREW----LARLEQKERERTGIRSL 475 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 K+ +N GY+IEVT + ++ ++ ++ +QT+S RF T L ++E+RIT A Sbjct: 476 KVGYNKVFGYYIEVTRPNLHLVPRE------YVRKQTISTGERFVTEALKEVESRITRAE 529 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 ++ ++ E+ +L + + + L +Q++A +D +ALA +A + RP++D+S Sbjct: 530 DAIERLQNEAIALLRSLVSANTRRLLATAQLLAEMDALVALAEVASRCGWVRPLVDDSDV 589 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 +++GRHP+VE +L+ + F+ NDC + N ++ L+TGPNMGGKST+LRQ A Sbjct: 590 IEIRNGRHPVVESSLEGER---FVPNDCYIG----GNWPRVLLITGPNMGGKSTYLRQVA 642 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LIV++AQ+GS+VPA A IG+VD++F+RVG+ D+LA G STFMVEM+ETA+ILN AT +S Sbjct: 643 LIVLLAQIGSFVPAESARIGLVDRIFTRVGAHDDLARGASTFMVEMVETATILNGATERS 702 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 V+LDEIGRGT+T DG++IA A +E +H+ R R L ATH+ ELT ++K L N + Sbjct: 703 LVVLDEIGRGTSTYDGMAIAQAVLEDIHDRVRARTLFATHYLELTTVAKKLPSAQNVHVS 762 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF 839 V++ + I+FL+ V PG AD +YGI V +LAGLP V RA +IL Sbjct: 763 VAEERDHIVFLYSVRPGAADRAYGIHVARLAGLPPWVAGRAENILHAL 810 >gi|325268300|ref|ZP_08134933.1| DNA mismatch repair protein MutS [Prevotella multiformis DSM 16608] gi|324989442|gb|EGC21392.1| DNA mismatch repair protein MutS [Prevotella multiformis DSM 16608] Length = 887 Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust. Identities = 288/832 (34%), Positives = 463/832 (55%), Gaps = 34/832 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD-I 81 K TPMM+Q+ +K+ +P +L+ +R GDFYE + +DA+ +++ LGITLT+R D I Sbjct: 6 KGLTPMMKQFFSMKAQHPGALMLFRCGDFYETYGEDAVESAKILGITLTRRNNGGNCDSI 65 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKK--RGNKSL------VRRNVVRL 133 M G P H + Y+ KLI+ G R+AIC+Q+E P + ++ +G K L V+R + L Sbjct: 66 EMAGFPHHALDTYLPKLIRAGKRVAICDQLEDPKKKREAIKGKKGLSAMDKMVKRGITEL 125 Query: 134 VTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRID 193 VTPG D +L+ ++N+L AV + ++++DISTG F D + + Sbjct: 126 VTPGVAMSDNVLNYKENNFLAAVHFGKGSCGVSFLDISTGEFLTGEGTFDYVEKLLGNFQ 185 Query: 194 PREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS 253 P+E++F + +++ F T VF D + + ++ ++ + FG Sbjct: 186 PKEVLFDRAK--KQDFERYFGTRLCTFEMDDWVFTDQT-ARQKLLKHFGTKNLKGFGVDH 242 Query: 254 QVEKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 AA AI Y++ TQ + I R + + +D +LE++ ++ Sbjct: 243 LHNGVVAAGAILQYLEITQHTHINHITSLARIEEDKYVRMDRFTIRSLELIAPMN-EDGA 301 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 SLL ID ++T GGR+ + PL D+ IN RLD +++ + P I + Sbjct: 302 SLLDVIDNTVTPMGGRMLRRWMVFPLKDAKPINERLDVVDYLFREPDFRECIDEQFHRIG 361 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLPQS 430 D+ R +S++ +GR P+++ +++ + + + L+ K+ E L+ E+L L +S Sbjct: 362 DLERIISKVAVGRVSPREVVQLKNALMAIQPVKTACLYAKS---ETLKRIGEQLN-LCES 417 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L + + D P G + G D LDE RS+RD K+ + +Q K AE+T I + Sbjct: 418 LRDRIEKEIQPDPPQLAAKGNVIAPGYDRQLDELRSIRDNGKQYLLEIQEKEAEQTGITS 477 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LKI NN GY++EV ++ KD + + +I +QT++ R+ T EL + E +I A Sbjct: 478 LKIGFNNVFGYYLEVRNTF-----KD-KVPENWIRKQTLAQAERYITPELKEYEEKILGA 531 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 L +E + F L + E + + +IA +D ++ ++++Q Y RP++D S Sbjct: 532 DEKILAMEGQLFMELIQDMQEFIPQIQINANLIAHLDCLLSFMKVSQQQRYVRPVVDGSE 591 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 +K GRHP++E L + ++ ND L D ++ ++TGPNM GKS LRQ Sbjct: 592 VLDIKQGRHPVIETQLP--IGEQYVPNDVLL----DTEHQQIMMITGPNMAGKSALLRQT 645 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALIV++AQ+G +VPA A IG+VDK+F+RVG++DN++ G STFMVEM E ++ILN T + Sbjct: 646 ALIVLLAQIGCFVPAERARIGMVDKIFTRVGASDNISLGESTFMVEMTEASNILNNVTPR 705 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNA 788 S V+ DE+GRGT+T DG+SIAWA +EYLHE R R L ATH+HEL ++ KS R N Sbjct: 706 SLVLFDELGRGTSTYDGISIAWAIVEYLHEHPRAQARTLFATHYHELNEMEKSFPRIRNF 765 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + V + + IIFL K+ PG ++HS+GI V ++AG+P +++ RA ILK E Sbjct: 766 NVSVKEVDGKIIFLRKLEPGGSEHSFGIHVAEIAGMPRSIVKRANVILKELE 817 >gi|256852232|ref|ZP_05557618.1| DNA mismatch repair protein MutS [Lactobacillus jensenii 27-2-CHN] gi|260661736|ref|ZP_05862647.1| DNA mismatch repair protein MutS [Lactobacillus jensenii 115-3-CHN] gi|256615278|gb|EEU20469.1| DNA mismatch repair protein MutS [Lactobacillus jensenii 27-2-CHN] gi|260547483|gb|EEX23462.1| DNA mismatch repair protein MutS [Lactobacillus jensenii 115-3-CHN] Length = 854 Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust. Identities = 302/886 (34%), Positives = 488/886 (55%), Gaps = 53/886 (5%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY +IKS PD+ +FYR+GDFYELF DDA+ ++ L +TLT R IPM GVP Sbjct: 1 MMKQYYDIKSQYPDAFLFYRVGDFYELFEDDAVKGAQILELTLTHRSNKSENPIPMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 + Y+ L++ G+++A+CEQ+E P +AK +V+R +++LVTPGT+ + Sbjct: 61 HQAVDSYVNTLVEKGYKVALCEQLEDPKQAK-----GMVKRGIIQLVTPGTMMNEGPNGA 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKELSH 206 +SNYL +V ++ + +A+ D+STG IF + ++++++ + +E++F E LS Sbjct: 116 KESNYLTSVFSTKSGFGLAYSDLSTGEIFTTHLKSFADVLNELLSLRTKEVVF-EGSLSD 174 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISY 266 ++ L ++ N+ V+ P E Y I + +Q EK A + Y Sbjct: 175 SQKDVLKKS--NITVSTP-----IQDQEKHAEVSYAIQKLS-----NQAEKDATKQLVIY 222 Query: 267 IKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSITGA 325 + TQ + + + ++ L + ++NLE++ + +G + SL +D + T Sbjct: 223 LLVTQKRSLAHLQIAKSYEVSQYLQMSHVVQNNLELVASAKTGKKMGSLFWLLDKTNTAM 282 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 GGRL + +A PL ++I R + + N ++ LK D+ R R+ G Sbjct: 283 GGRLLKQWLARPLLSISEIEKRQKIVQAMLDNYFTREGVKDALKGVYDLERLTGRIAFGS 342 Query: 386 GEPKDIAVIRDGIRSGINILN-LFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLP 444 +++ + + + I + LF D E+L E++ L + L K + + ++ P Sbjct: 343 ANARELLQLSRSLDAIPQIQSALFESGD--EDLANFAEQIIDLSE-LAKKIKDTIVENPP 399 Query: 445 TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIE 504 DGG +R+G + LD R + K +A LQ + + T I+NLKI +N GYFI+ Sbjct: 400 ILTTDGGLIREGINEQLDRYRDAMNNGKTWLAQLQAQERKATGIENLKIGYNKVFGYFIQ 459 Query: 505 VTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEI 564 V+ + + + + R+I +QT++ R+ T EL + EN I A N + +E + F Sbjct: 460 VSKGNVAKV-----PEGRYIRKQTLTGSERYITPELKEHENLILEAENKSTDLEYQIFSD 514 Query: 565 LSNAI---IEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI-VKDGRHP 620 L I I + + L NA IA +D + A +A+E NYCRP + I V GRHP Sbjct: 515 LREYIKTFIPKLQELGNA---IASLDALTSFATVAEENNYCRPSFHQDSQEIKVVAGRHP 571 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK L S +I ND ++ + ++L+TGPNM GKST++RQ ALI +MAQ+G Sbjct: 572 VVEKVLADGS---YIPNDIQMA-----DDTSVFLITGPNMSGKSTYMRQMALIAVMAQVG 623 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA+ A + I D++F+R+G+AD+L SG+STFMVEM E L AT +S V+ DEIGR Sbjct: 624 SFVPATEAALPIFDQIFTRIGAADDLISGQSTFMVEMSEANEALQNATKRSLVLFDEIGR 683 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A ++YLH+ + L ATH+HELTD+ K+L N + + N +I Sbjct: 684 GTATYDGMALAGAIVKYLHDKVGAKTLFATHYHELTDMEKTLDHLKNIHVGATQENGNLI 743 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK----DMRLYYPE 856 FLHK++PG AD SYGI V +LAGLPN V+ A +LK E + + + L+ + Sbjct: 744 FLHKILPGPADQSYGIHVAQLAGLPNKVLREASKMLKRLEAQGANGLEPASLQLDLFNEK 803 Query: 857 IQTKESKNN--LSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAW 900 ++E+ ++ +S +K +E I L L + +PL ++ V +W Sbjct: 804 NDSEETTSDEAISDTEKQVIEDINNLYLADKTPLEVMQL---VASW 846 >gi|333029553|ref|ZP_08457614.1| DNA mismatch repair protein mutS [Bacteroides coprosuis DSM 18011] gi|332740150|gb|EGJ70632.1| DNA mismatch repair protein mutS [Bacteroides coprosuis DSM 18011] Length = 876 Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust. Identities = 296/889 (33%), Positives = 485/889 (54%), Gaps = 39/889 (4%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 + TPMM+Q+ ++K +P++++ +R GDFYE F DA+LA+ LGITLT+R + M Sbjct: 7 AQTPMMKQFFDLKKKHPNAVMLFRCGDFYETFSSDAVLAADILGITLTRRANGKNTYVEM 66 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G P H + Y+ KL++ G R+AIC+Q+E P + K+LV+R V LVTPG D Sbjct: 67 AGFPHHALDTYLPKLVRAGKRVAICDQLEDP-----KTTKTLVKRGVTELVTPGVSINDN 121 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 +L+ ++N+L A+ R+ + I+++DISTG F + N D + + P+E++F + Sbjct: 122 ILNNKENNFLAAIYFNRSIYGISFLDISTGEFLTAEGNSDYIDKLLTNFAPKEVLFERGK 181 Query: 204 LSHAEYKSLFETLGN--VAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 + E E GN + F + ++ ++ + FG AA Sbjct: 182 KTQFE-----ELFGNKFFTYELDDWVFTEQTAHEKLLSHFQVANFKGFGVDHLPNGLIAA 236 Query: 262 AAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 +I Y+ TQ N I R + + +D +LE+L +++ SLL+ ID Sbjct: 237 GSILQYLDITQHHNISHITTLSRIEEDKFVRLDKFTIRSLELLNSMNDGG-SSLLQVIDK 295 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 +IT GGRL + PL + IN RLD +++F + P I L D+ R +S+ Sbjct: 296 TITPMGGRLLKRWVVFPLKEVNAINNRLDVVDYFFKQPSFKEIITDQLHLIGDLERIISK 355 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + +GR P+++ ++ +++ I + N L ++L L + + + + Sbjct: 356 VAVGRVSPREVVQLKVALQA-IEPIKKACLNANDASLNRIGDQLN-LCEKIRDRIDKEIE 413 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 +D P G + G + LD+ R + K + +Q + EET I +LKI +NN G Sbjct: 414 NDPPMLVNKGHVICSGVNEELDDLRKIAYSGKDYLLQIQQREIEETGIPSLKIAYNNVFG 473 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IEV ++ + K+ +I +QT+ + R+ T EL E +I A L++E + Sbjct: 474 YYIEVRNTHKDKVPKE------WIRKQTLVSAERYITQELKVYEEKILGAEEKILILEAK 527 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 FE L + E ++ + IA +D ++ + +A+ Y RP+I + ++ GRHP Sbjct: 528 LFEELVTDLAEYISAIQLNANQIAALDCLLSFSSIAQLNKYIRPVIQDDDVLSIQQGRHP 587 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 ++EK L + +IAND L D + ++ ++TGPNM GKS LRQ ALI +MAQ+G Sbjct: 588 VIEKELPL--GEQYIANDVYL----DNTTQQIIMITGPNMSGKSALLRQTALITLMAQIG 641 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 +VPA A IG+VDK+F+RVG++DN++ G STFMVEM E A+ILN +++S V+ DE+GR Sbjct: 642 CFVPAESAQIGLVDKIFTRVGASDNISMGESTFMVEMNEAANILNNLSSRSLVLFDELGR 701 Query: 741 GTATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GT+T DG+SIAWA +EY+H NR + L ATH+HEL ++ KS R N + V + + Sbjct: 702 GTSTYDGISIAWAIVEYIHNNPNNRAKTLFATHYHELNEMEKSFDRIKNYNVSVKEIDNK 761 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK--DMRLYYPE 856 +IFL K+ G ++HS+GI V K+AG+P +++ R+ +IL E + ++ + + P Sbjct: 762 VIFLRKLKRGGSEHSFGIHVAKMAGMPPSIVKRSNEILAQLEAVNRSGEESNNKKSKTPL 821 Query: 857 I-QTKESKNNLS--KNDKLFVEKIK--CLNLD--EMSPLTALKTLYAVK 898 I Q +E LS + D + +I+ +NLD ++PL AL L +K Sbjct: 822 ISQKQEDGVQLSFFQLDDPILSQIRDEIINLDVNNLTPLEALNKLNDIK 870 >gi|221214739|ref|ZP_03587708.1| DNA mismatch repair protein MutS [Burkholderia multivorans CGD1] gi|221165278|gb|EED97755.1| DNA mismatch repair protein MutS [Burkholderia multivorans CGD1] Length = 884 Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust. Identities = 308/902 (34%), Positives = 469/902 (51%), Gaps = 57/902 (6%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 + + + TPMM+QY+ IK+ +PD+LVFYRMGDFYELFF+DA A+R L +TLT+RG G Sbjct: 7 DAIANHTPMMQQYLRIKAEHPDTLVFYRMGDFYELFFEDAEKAARLLDLTLTQRGASAGN 66 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 I M GVP H Y+ KL+K+G +AICEQI P +K V R VVR+VTPGTL Sbjct: 67 PIKMAGVPHHAVEQYLAKLVKMGESVAICEQIGDPAT-----SKGPVERKVVRVVTPGTL 121 Query: 140 TEDQLLSPTDSNYLMAVAR------IRTEWAIAWIDISTGIFKISTSNHDRLISDIMRID 193 T+ LLS + YL+A+ + +AW+++++G +++ D+L + + RI Sbjct: 122 TDAALLSDKNDVYLLAMCTGHNKRGVAVNIGLAWLNLASGALRLAEIEPDQLGAALERIR 181 Query: 194 PREIIFSEKELSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFGSF 252 P EI+ ++ G A+ + P FD + R+ + ++ ++D FG+ Sbjct: 182 PAEILTADGATDAI-------PAGAGAIKRVPAWHFDIASGTQRLCEQLDVASLDGFGAH 234 Query: 253 SQVEKTAAAAAISYIKK-TQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 S AA A+ TQ + + E+ + +D A R NLE+ TL G+ Sbjct: 235 SLTSACGAAGALLLYAAATQGQQLRHVRSLKVENESEYIGLDPATRRNLELTETLRGTES 294 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPI--LINPIQKILK 369 +L +D T G RL + P S +R +I + P ++ ++ L+ Sbjct: 295 PTLYSLLDTCCTTMGSRLLRHWLHHPPRASVAAQSRQQAIGALLDAPADASLDALRSALR 354 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 DV R RL + P+D++ +RD + + L +K + A P Sbjct: 355 QIADVERITGRLALLSARPRDLSSLRDTF-AALPALRERIKPIVANADALARLDAALAPP 413 Query: 430 S-LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 + L++ ++ + RDGG + G DA LDE R + + + + L+ + T I Sbjct: 414 AECLDLLTNAIAPEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLEARERARTGI 473 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 NL++++N G++IEVT + D + RQT+ N R+ T EL E++ Sbjct: 474 ANLRVEYNKVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTFEDKAL 527 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 +A AL E ++ + A++ + +A +D+ A A A+ ++ P + Sbjct: 528 SAQERALSRERALYDSVLQALLPFIPECQRVASALAELDLLAAFAERARALDWVAPTFTD 587 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 ++ GRHP+VE ++Q FIANDC KL L+TGPNMGGKSTF+R Sbjct: 588 EVGIEIEQGRHPVVEAQVEQ-----FIANDCRFGAER-----KLLLITGPNMGGKSTFMR 637 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q ALI +MA +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+ILN AT Sbjct: 638 QTALIALMAYVGSYVPAKSARFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILNDAT 697 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA 788 QS V++DEIGRGT+T DGL++AWA +L N C L ATH+ ELT L + N Sbjct: 698 PQSLVLMDEIGRGTSTFDGLALAWAIARHLLAHNGCYTLFATHYFELTQLPIEFPQAANV 757 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 L + GI+FLH V G A+ SYG+QV +LAG+P VI A + L H Q+ Sbjct: 758 HLSAVEHGHGIVFLHAVNEGPANQSYGLQVAQLAGVPAPVIRAAR------KHLAHLEQQ 811 Query: 849 DMRLYYPEI---QTKESKNNLSKNDKLFV--------EKIKCLNLDEMSPLTALKTLYAV 897 P++ + + +L D V EK++ ++ D++ P AL LY + Sbjct: 812 SAAQQTPQLDLFSAQPAPGDLECADAPVVPDAPHPALEKLREIDPDDLKPREALDLLYEL 871 Query: 898 KA 899 +A Sbjct: 872 RA 873 >gi|148543760|ref|YP_001271130.1| DNA mismatch repair protein MutS [Lactobacillus reuteri DSM 20016] gi|184153166|ref|YP_001841507.1| DNA mismatch repair protein MutS [Lactobacillus reuteri JCM 1112] gi|227363260|ref|ZP_03847392.1| DNA mismatch repair protein MutS [Lactobacillus reuteri MM2-3] gi|325682132|ref|ZP_08161650.1| DNA mismatch repair protein HexA [Lactobacillus reuteri MM4-1A] gi|189083181|sp|A5VIW9|MUTS_LACRD RecName: Full=DNA mismatch repair protein mutS gi|229620050|sp|B2G6E5|MUTS_LACRJ RecName: Full=DNA mismatch repair protein mutS gi|148530794|gb|ABQ82793.1| DNA mismatch repair protein MutS [Lactobacillus reuteri DSM 20016] gi|183224510|dbj|BAG25027.1| DNA mismatch repair protein MutS [Lactobacillus reuteri JCM 1112] gi|227071716|gb|EEI10007.1| DNA mismatch repair protein MutS [Lactobacillus reuteri MM2-3] gi|324978776|gb|EGC15725.1| DNA mismatch repair protein HexA [Lactobacillus reuteri MM4-1A] Length = 881 Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust. Identities = 293/837 (35%), Positives = 469/837 (56%), Gaps = 52/837 (6%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K +TPMM QY ++K PD+ +FYR+GDFYELF DDA+ ++ L +TLT R IP Sbjct: 3 KKTTPMMEQYQKVKDQYPDAFLFYRLGDFYELFNDDAVKGAQLLELTLTTRNHSAKNPIP 62 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP N+YI LI G+++AICEQ+E P +AK +V+R V RL+TPGT + Sbjct: 63 MCGVPHRAVNNYIDILIDKGYKVAICEQMEDPKKAK-----GMVKRAVTRLITPGTQMDL 117 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSE 201 D+NYL A++ ++IA+ D+STG K S +N + +++++ + +E++ + Sbjct: 118 NGEQARDNNYLAAISGQNGVFSIAYTDLSTGELKTTSLNNANDAVNELVNLQSKEVVV-D 176 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 EL E + F+ + QP V + IS Y +D Q ++ A Sbjct: 177 GELP-VEITTQFKQRNILQSHQPTVLKNAEIS-------YLTQDLD-----DQAQQHVVA 223 Query: 262 AAISYIKKTQMVNKPTIGYPERE---DIQSTLFIDSAARSNLEILRTL-SGSREQSLLKT 317 +SY+ TQ K ++ + ++ S + ID +++NLE++R + SG R+ +L Sbjct: 224 LLVSYLLTTQ---KRSLAHMQKAIAYQPSSFMKIDHYSKTNLELMRNMRSGKRQGTLAWL 280 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D + T G RL I PL + I+ R D + + + + +Q+ L D+ R Sbjct: 281 LDETKTAMGSRLLKRWIDRPLINQNAISERQDKVQELLDHYFERSNLQQELIKVYDLERL 340 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKTL 435 R+ G +D+ ++ ++ I + D P EEL+ ++ L + +++++ Sbjct: 341 AGRVAYGSVNGRDLIQLKTSLKQVPKIKYVLETLDSPVFEELQKQLDPLDDVADLIDQSI 400 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 ++ P +GG ++DG + LD+ R + K+ I LQ + T I NLKI + Sbjct: 401 I----EEPPIAVTEGGVIKDGYNDQLDQYRDAMNNGKQWIVDLQEHERKLTGINNLKIGY 456 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N+ GY+IEVT + L KDR+ +QT+ N RF+T EL + E I A + Sbjct: 457 NHVFGYYIEVTKVNLDKL-----PKDRYERKQTLVNAERFSTPELKEKEALIMGAQEKST 511 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E + F + + Q L +Q +A +D+ + A+++++ ++ RP ++ +K Sbjct: 512 ALEYDIFVKIREQVKGQITRLQKLAQQLAELDVLQSFAVVSEDYHFVRPEMNTGHVLKIK 571 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 DGRHP+VEK + Q ++ ND + D + L+TGPNM GKST++RQ ALI + Sbjct: 572 DGRHPVVEKFMGHQE---YVPNDVLMGEDTD-----ILLITGPNMSGKSTYMRQLALIAV 623 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+G +VPA A + I D++F+R+G+AD+L SG STFMVEM+E + L AT++S ++ Sbjct: 624 MAQIGCFVPAKSAELPIFDQVFTRIGAADDLISGESTFMVEMMEANNALTHATDRSLILF 683 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGTAT DG+++A A IEY+H+ R + L +TH+HELT L SL R N + ++ Sbjct: 684 DEIGRGTATYDGMALAQAIIEYVHQHVRAKTLFSTHYHELTALENSLARLKNVHVGATEK 743 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 + ++FLHKV G AD SYGI V KLAG+P++++ RA IL+ E QKD++L Sbjct: 744 DGELVFLHKVSAGPADKSYGIHVAKLAGMPSSLLKRADTILQKLE------QKDVKL 794 >gi|218258632|ref|ZP_03474960.1| hypothetical protein PRABACTJOHN_00615 [Parabacteroides johnsonii DSM 18315] gi|218225307|gb|EEC97957.1| hypothetical protein PRABACTJOHN_00615 [Parabacteroides johnsonii DSM 18315] Length = 895 Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust. Identities = 291/898 (32%), Positives = 482/898 (53%), Gaps = 56/898 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M+QY +IK+ +PD+++ +R+GDFYE++ +DA+ + LGI TK+ G+ I M G Sbjct: 23 TPLMKQYFDIKAKHPDAILLFRVGDFYEMYGEDAVTGAEILGIVQTKKANGPGQTIEMAG 82 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KL++ G R+AIC+Q+E P KK LV+R + LVTPG D +L Sbjct: 83 FPHHALDSYLPKLVRAGKRVAICDQLEDPKLTKK-----LVKRGITELVTPGVSINDNIL 137 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 + ++N+L A+ + IA++DISTG F + + D + + P+E++ + Sbjct: 138 NHKENNFLAAIHFGKDVCGIAFLDISTGEFLTAEGSIDYVDKLLNNFSPKEVL-----VE 192 Query: 206 HAEYKSLFETLGNVAVAQPNVF--------FDHSISESRIADYYNITTVDTFG-SFSQVE 256 K E G P F F + R+ ++ + FG ++ Sbjct: 193 RGSRKRFEEAFG------PRFFIFELDDWVFTSEAANDRLLKHFETKNLKGFGVQHLKLG 246 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 A+ A + Y+ +TQ + I R + + +D +LE++ T++ SLL Sbjct: 247 IVASGAILYYLDQTQHTHISHITSLSRIEEDRYVRLDKFTVRSLELVSTMN-EEGTSLLD 305 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D +++ G R+ I PL D I+ R D + +F ++P + +++ L+ D+ R Sbjct: 306 VLDKTVSPMGSRMLRRWILFPLKDVKPIHERQDVVEYFFRHPEVKELLEEKLEQIGDLER 365 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 +S++ +GR P+++ ++ +R+ I + +D P R E+L + + Sbjct: 366 IISKVAVGRVSPREVVQLKVALRAIEPIKEACMASDEPSLCRIG-EQLNACAL-IRDRIE 423 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 +++D P+ GG + G +A LDE R++ K + +Q + E T I +LKI N Sbjct: 424 KEINNDPPSLLNRGGVIATGVNAELDELRAIAYSGKDYLLKVQAREIELTGISSLKIGFN 483 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 N GY+IEV ++ + + +I +QT+ N R+ T EL + E +I A L Sbjct: 484 NVFGYYIEVRNAYKDKVPAE------WIRKQTLVNAERYITEELKEYEEKILGAEEKILS 537 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E F L + E + + +I +D ++ A +A+ Y RP +++S +K Sbjct: 538 LEARLFNELVLCLSEYIPPIQMNANLIGRLDCLLSFAKVAEINCYIRPDVNDSQVIDIKA 597 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP++EK L +P+IAND L D ++ ++TGPNM GKS LRQ ALI +M Sbjct: 598 GRHPVIEKQLP--IGEPYIANDVYL----DDEKQQIIIITGPNMAGKSALLRQTALITLM 651 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 +Q+G +VPA AHIGIVDK+F+RVG++DN++ G STFMVEM E + ILN +++S V+ D Sbjct: 652 SQIGCFVPAECAHIGIVDKIFTRVGASDNISVGESTFMVEMNEASDILNNMSSRSLVLFD 711 Query: 737 EIGRGTATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 E+GRGT+T DG+SIAWA +EY+HE R + L ATH+HEL ++ S KR N + V + Sbjct: 712 ELGRGTSTYDGISIAWAIVEYIHEHPNARAKTLFATHYHELNEMETSFKRIKNYNVSVKE 771 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 N +IFL K++PG ++HS+GI V K+AG+P +++ R+ +ILK E Sbjct: 772 VNNKVIFLRKLVPGGSEHSFGIHVAKMAGMPKSIVKRSNEILKQLETENRQEGIATEKRK 831 Query: 855 PEIQTKESKNNLSKNDKLFV--------------EKIKCLNLDEMSPLTALKTLYAVK 898 I++K K S D + ++IK L+++ ++PL AL L ++ Sbjct: 832 GGIKSKPVKGIASSADGYQLSFFQLDDPVLSQVRDEIKNLDVNNLTPLEALNKLSEIR 889 >gi|332663076|ref|YP_004445864.1| DNA mismatch repair protein mutS [Haliscomenobacter hydrossis DSM 1100] gi|332331890|gb|AEE48991.1| DNA mismatch repair protein mutS [Haliscomenobacter hydrossis DSM 1100] Length = 872 Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust. Identities = 282/827 (34%), Positives = 468/827 (56%), Gaps = 42/827 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M QY ++K PD+++ +R+GDFYE F DA+ S+ LGI LT R G D+ + G Sbjct: 6 TPLMEQYNKVKKKYPDAILLFRVGDFYETFGTDAVTTSKVLGIVLTSRNNG-GNDVELAG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H+ + Y+ +L++ G+R+AICEQ+E P KK +VRR V ++TPG +D+LL Sbjct: 65 FPFHSLDLYLPRLVRAGYRVAICEQLEKPSPLKK-----IVRRGVTEVITPGVAVDDKLL 119 Query: 146 SPTDSNYLMAVARIRTE-WAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 +N+L ++ R + + IA++DISTG F +S + + + +P EIIFS+ Sbjct: 120 DHQSNNFLASLYFGRKDDFGIAFLDISTGEFLVSEGDWTYIDKLLQGFNPSEIIFSKDR- 178 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAAAAA 263 +++S F + VF + ++ ++++ + FG ++ + AA AA Sbjct: 179 -RKQFESRFGEKFYLYTLDEWVF-TYDYGREKLLKHFDVQNLKGFGVEDMELGQIAAGAA 236 Query: 264 ISYIKKTQMVNKPTIG-----YPEREDIQSTLFIDSAARSNLEILRTLSGSREQ--SLLK 316 + Y++ T+ N I YP+R +++D NLE+L S E SLLK Sbjct: 237 LHYLETTENKNLKHISSITRIYPDR-----YVWLDRFTIRNLELL---SSPHETGVSLLK 288 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D +++ G RL + I PL I++RL+ + +F++ ++K L+ D+ R Sbjct: 289 IMDQTVSPMGARLLKKWIVLPLKSKLAIDSRLEMVAYFLETEDKGREVEKSLRLMGDLER 348 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 +S++ +G+ P+++ ++ + + + L L EL + L P +E+ ++ Sbjct: 349 LISKVPLGKVNPRELVQLKRALIA-VGPLKEMLAGTGHLELEKIADGLNPCPGLVER-IA 406 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + ++ P GG + DG + LDE R + + +K ++ +Q K E + I +LK+ N Sbjct: 407 KQIVEEPPVNLAKGGVIADGFSSELDELRHVINHAKELLLGIQEKEVERSGIPSLKVGFN 466 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 + GY++EVT+ + ++ +I +QT++N RF T EL LE +I A L Sbjct: 467 SVFGYYLEVTNKYKN------QTPAEWIRKQTLANAERFITEELKVLEAKILGAEERILD 520 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E F+ L + + + + + ++A +D ++ A +A YCRP + +++ Sbjct: 521 LEERLFQELVLDLADYIHPVQHNATLLARLDCILSFAKVATRHQYCRPQLSEELEIDIRE 580 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP++E+ L + ++ ND L D ++ ++TGPNM GKS LRQ ALI +M Sbjct: 581 GRHPVIEQQLPL--GEMYVPNDVFL----DHEHQQILMITGPNMAGKSALLRQTALICLM 634 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQMGSYVPA AH+GI+DK+F+RVG++DN++SG STFMVEM ETASI+N +++S ++LD Sbjct: 635 AQMGSYVPARSAHLGILDKVFTRVGASDNISSGESTFMVEMNETASIMNNISDRSLILLD 694 Query: 737 EIGRGTATLDGLSIAWATIEYLHET--NRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 EIGRGT+T DG+SIAW+ EYLH R + L ATH+HEL +LS+ R N + + Sbjct: 695 EIGRGTSTYDGISIAWSIAEYLHNNPFARPKTLFATHYHELNELSEKFSRIKNYHVATKE 754 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 + +IFL K+ G + HS+GI V K+AG+P ++ RA IL+ E+ Sbjct: 755 VGQKVIFLRKLTAGGSQHSFGIHVAKMAGMPKMIVDRANHILEQLEQ 801 >gi|291534090|emb|CBL07203.1| DNA mismatch repair protein MutS [Megamonas hypermegale ART12/1] Length = 810 Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust. Identities = 295/830 (35%), Positives = 458/830 (55%), Gaps = 57/830 (6%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY +K+ +PD ++F+R+GDFYE+F DDA+L S+ L +TLTKR G IPMCGVP Sbjct: 1 MMQQYQTVKNAHPDQILFFRLGDFYEMFLDDAILVSKELELTLTKRST-AGDGIPMCGVP 59 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A YI KL+ G+++AICEQI P K +G L +R V++++TPGT+ + L+ Sbjct: 60 YHAAESYINKLVNKGYKVAICEQIGDP---KAKG---LTKREVIKIITPGTVMNESALTS 113 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDR---LISDIMRIDPREIIFSEKE 203 + +NY+ + +A DISTG F DR L ++ R+ E++ + Sbjct: 114 SKNNYIALIYEENHAIYLAGADISTGECFYSIYDGPDRCQLLFDELYRLMMPELLLIKPF 173 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 E K+ N + I + + + D +++ A A Sbjct: 174 SYERELKNFLSLRLNNCLVNELTEITSQIEDLMLQHFDMHNRPD-----NKIAHKAIATL 228 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 + Y+ +T + + D +LFID+ NLEI R L G ++ +L +D++ Sbjct: 229 LEYLHETVKTDLTHLNKLTYLDSSKSLFIDTYTLRNLEITRNLRDGGKKDTLYDVLDFTK 288 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G RL + + PL KIN RLD++ + + L N +++ LK D R L+R++ Sbjct: 289 TAMGSRLLRKWLEYPLLSPKKINDRLDAVANLVSDFSLRNNLREQLKEIYDFERLLTRME 348 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 +G +D+ + ++S + +L P + + KL ++ + +S+ DD Sbjct: 349 VGTANARDM----NALKSSLYVL--------PAIKKSLAKATAKLLVNIHQNISTY--DD 394 Query: 443 L-----------PTFK-RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L P+F R+GGF++DG + LDE R++ SKR++ ++ +T IK+ Sbjct: 395 LVVLIDKAIVEDPSFSIREGGFIKDGYNQELDEYRNIAKNSKRLLQQMEEDEKNKTGIKS 454 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LKI +N GY+IEV SS ++ ++ +I +QT++N R+ T EL + E +I A Sbjct: 455 LKIGYNKVFGYYIEVRHSSTEMVPEN------YIRKQTLANAERYITPELKEFETKILGA 508 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 + +E F L + + + S+ N + IAI+D+ ++LA E NY RP + + Sbjct: 509 QEKIVQLEYNLFTELRDILKTKISSIQNTAHEIAILDVLVSLAQAGDEYNYIRPKLLDDG 568 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 +KDGRHP+VE+ L + F+ ND L D ++ ++TGPNM GKST++RQ+ Sbjct: 569 TIHIKDGRHPLVERILNRDL---FVPNDTHL----DNAQNEIMIITGPNMAGKSTYMRQS 621 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 AL+ +M Q+GS++PA A I VDK+F+R+G++D+L SG+STFMVEM E + IL ATN+ Sbjct: 622 ALLTLMTQVGSFIPAREASISPVDKIFTRIGASDDLVSGQSTFMVEMNEVSHILKYATNK 681 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S VILDEIGRGT+T DG+SIA A IE++ + + L ATH+HELTDL + N + Sbjct: 682 SLVILDEIGRGTSTYDGMSIARAVIEHIRDHIGAKTLFATHYHELTDLEDDV-HVKNYCI 740 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 V + + FL ++I G AD SYGI V KLAGLP V+ RA IL E Sbjct: 741 AVKEKGSDVTFLRRIIRGSADKSYGIHVAKLAGLPQEVVKRAETILIDLE 790 >gi|221222520|sp|A4G717|MUTS_HERAR RecName: Full=DNA mismatch repair protein mutS gi|193222369|emb|CAL62304.2| DNA mismatch repair protein MutS [Herminiimonas arsenicoxydans] Length = 893 Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust. Identities = 308/895 (34%), Positives = 466/895 (52%), Gaps = 54/895 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ IK+ +P++L+FYRMGDFYE+FF+DA ASR LGITLT+RG G I M G Sbjct: 22 TPMMQQYLRIKAEHPETLLFYRMGDFYEVFFEDAEKASRLLGITLTQRGSSNGNPIKMAG 81 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H + Y+ KL+K+G IA+CEQI P +K V R V+R++TPGTL++ LL Sbjct: 82 VPFHAVDQYLSKLVKLGESIALCEQIGDPAT-----SKGPVERKVLRVITPGTLSDSDLL 136 Query: 146 SPTDSNYLMAV----ARIRTEWAIAWIDISTGIFKISTSNHD------RLISDIMRIDPR 195 L+A+ R +AW+ +++G K+ D RL ++ RI P Sbjct: 137 PEKSEQPLLALYSTTQRKTITIGLAWLSMASGALKLMEFTTDARNAATRLKHELERIAPA 196 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS-FSQ 254 E++ S S + N V P+ FD + + + ++T+ FG+ Sbjct: 197 EVLLPG---SIDGPDSDYAFAKNTTV--PDWHFDIAHGSKALHEQLKVSTLTGFGAEHLN 251 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS- 313 AA A + Y + TQ + E + +D+A R NLE+ T+ G S Sbjct: 252 AAIGAAGALLRYAQATQGKGLQHVRALTVETENEFIGLDAATRRNLELTETIRGQDNNSA 311 Query: 314 -LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 L +D+ T G RL + D R +IN ++ + L S P Sbjct: 312 TLFSLLDHCRTAMGSRLLRHWLHHARRDQAVARARHAAINALMRTDACTG-LASTLASVP 370 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGI------RSGINILNLFLKNDLPEELRGAVEKLKK 426 DV R +R+ + P+D+A +R G+ R+ +++ N D L + Sbjct: 371 DVERIATRIALQSARPRDLAGMRGGLQQLPSLRAYVSMCN----QDADAPLLKTIHDALA 426 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 P + ++ + RDGG + G DA LDE R L + + + + L+ + T Sbjct: 427 TPSECLDLVERAIALEPAAMVRDGGVIARGFDAELDELRGLSENAGQFLVDLETRERTRT 486 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 I NL++++N G++IEVT + D + RQT+ N R+ T EL E++ Sbjct: 487 GINNLRVEYNKVHGFYIEVTHGQTDKVPDD------YRRRQTLKNAERYITPELKAFEDK 540 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 +A AL E ++ + + + +L N + +A +D +ALA A N+C P + Sbjct: 541 ALSAQERALAREKYLYDQVLQQMAQHIGTLQNIAHALAQLDTLVALAEHALRHNWCAPQL 600 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 ++ GRHP+VE +++ FIANDC L+ N +L L+TGPNMGGKST+ Sbjct: 601 IAEPTIAIEQGRHPVVENHIER-----FIANDCLLN-----NESRLLLITGPNMGGKSTY 650 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ ALI ++A +GS+VPA+ A IG +D++F+R+G+AD+LA GRSTFMVEM E+A+ILN Sbjct: 651 MRQVALITLLAYVGSFVPATSATIGPIDRIFTRIGAADDLAGGRSTFMVEMTESAAILNG 710 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT S V++DE+GRGT+T DGL++AWA +L ++ R L ATH+ ELT L + Sbjct: 711 ATENSLVLMDEVGRGTSTFDGLALAWAIARHLIDSTRSFTLFATHYFELTQLPEVHPSAA 770 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN 846 N L + + I+FLH V G A SYG+QV +LAG+P VI A L T E Sbjct: 771 NVHLSAVEHKDSIVFLHAVQAGPASQSYGLQVAQLAGVPQAVIRAARKHLATLEANSMQA 830 Query: 847 QKDMRLYY-PE--IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 L+ P+ I T + + +++ L E + +N D +SP AL LY +K Sbjct: 831 TPQFDLFADPDHLIPTSDVETAMAQPSAL-DEALADINPDALSPRDALDALYRLK 884 >gi|91784184|ref|YP_559390.1| DNA mismatch repair protein [Burkholderia xenovorans LB400] gi|91688138|gb|ABE31338.1| DNA mismatch repair protein MutS [Burkholderia xenovorans LB400] Length = 878 Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust. Identities = 302/893 (33%), Positives = 460/893 (51%), Gaps = 53/893 (5%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY+ IK+ +P +LVFYRMGDFYELFF+DA A+R L +TLT+RG G I M GVP Sbjct: 1 MMQQYLRIKAEHPGTLVFYRMGDFYELFFEDAEKAARLLDLTLTQRGASAGNPIKMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H Y+ KL+K+G +AICEQI P +K V R VVR+VTPGTLT+ LLS Sbjct: 61 HHAVEQYLAKLVKLGESVAICEQIGDPAT-----SKGPVERKVVRVVTPGTLTDAALLSD 115 Query: 148 TDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 + YL+A+ + T +AW+++++G +++ D++ + + RI P E++ ++ Sbjct: 116 KNDVYLLAMCVAHNRRGVATSVGLAWLNLASGALRLAELAPDQVAAALERIRPAEVLVAD 175 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS------QV 255 A + V P FD + R+ D + +D FG+ S Sbjct: 176 TPGDAASWTPPVNAGALTRV--PVWHFDIASGTQRLCDQLEVAGLDGFGAHSLTCAWGAA 233 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA + ++ + V + Y E E I +D A R NLE+ TL G+ +L Sbjct: 234 GALLLYAAATQGQQLRHVRSLKVEY-ESEYIG----LDPATRRNLELTETLRGTESPTLC 288 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP--ILINPIQKILKSSPD 373 +D T G RL + P +S R +I ++ P ++ ++ L+ D Sbjct: 289 SLLDTCCTTMGSRLLRHWLHHPPRESAVAQARQQAIGALLEAPPGAGVDSLRGALRQISD 348 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R RL + P+D++ +RD + + + ++ + PQ+ + Sbjct: 349 IERITGRLALLSARPRDLSSLRDTFIALPELRAQLAAVSPNADSLARIDASLEPPQACVE 408 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L ++++ RDGG + G DA LDE R + + + + L+ + T I NL++ Sbjct: 409 LLRRAVAEEPSAMVRDGGVIARGYDAELDELRDISENCGQFLIDLETRERARTGIGNLRV 468 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 ++N G++IEVT + D + RQT+ N R+ T EL E++ +A Sbjct: 469 EYNKVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTFEDKALSAQER 522 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL E ++ L A++ + +A +D+ A A+ ++ P Sbjct: 523 ALARERSLYDALLQALLPFIPDCQRVASALAELDLLAAFGERARALDWVAPTFSPDAGIE 582 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 ++ GRHP+VE ++Q FIANDC L+ KL L+TGPNMGGKSTF+RQ ALI Sbjct: 583 IEQGRHPVVEAQVEQ-----FIANDCSLT-----PERKLLLITGPNMGGKSTFMRQTALI 632 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 ++A +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+ILN AT QS V Sbjct: 633 ALLAYVGSYVPARRAAFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILNDATPQSLV 692 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DEIGRGT+T DGL++AWA +L N C L ATH+ ELT L + N L Sbjct: 693 LMDEIGRGTSTFDGLALAWAIARHLLAHNGCHTLFATHYFELTQLPAEFPQAANVHLSAV 752 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL-YHHNQKDMRL 852 + GI+FLH V G A+ SYG+QV +LAG+PN VI A L E+ + L Sbjct: 753 EHGHGIVFLHAVSEGPANQSYGLQVAQLAGVPNAVIRAARKHLAYLEQQSAAQPAPQLDL 812 Query: 853 Y---YPEIQTKESKNNLSKNDKL-------FVEKIKCLNLDEMSPLTALKTLY 895 + P + SK + L VE+++ ++ +++ P AL LY Sbjct: 813 FAAPMPMLLEDADDERDSKAEALVPPAMQALVERLRGIDPNDLRPREALDLLY 865 >gi|291614720|ref|YP_003524877.1| DNA mismatch repair protein MutS [Sideroxydans lithotrophicus ES-1] gi|291584832|gb|ADE12490.1| DNA mismatch repair protein MutS [Sideroxydans lithotrophicus ES-1] Length = 880 Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust. Identities = 316/910 (34%), Positives = 473/910 (51%), Gaps = 75/910 (8%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S TPMM+QY+ IK+ + D L+FYRMGDFYELF DDA+ A++ L ITLT+RG G I M Sbjct: 8 SHTPMMQQYLRIKAEHNDKLLFYRMGDFYELFHDDAVRAAKLLDITLTQRGASNGSPIKM 67 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H A Y+ +L+K+G +AICEQI P +K V R VVR+VTPGT+T+ Sbjct: 68 AGVPYHAAEQYLARLVKMGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTVTDSA 122 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 LL N L+A+ + + +AW+++++G F + + D L +++ R+ P EI+ +E Sbjct: 123 LLEEKRDNLLLALHQRSGKLGLAWLNLASGQFFVCETATDNLAAELERLQPSEILHAEDA 182 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAAAA 262 A + F+TL P FD + + + + FG V AA A Sbjct: 183 ALQASIHAAFKTL-------PVWHFDLETARRGLCQQFATIDLAGFGCDDYTVGLEAAGA 235 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 + Y K TQ + I + + +D+A R NLEI +TL G +LL +D Sbjct: 236 LLGYAKLTQGQSISHIRSVQVYSADRYVRMDAATRRNLEITQTLRGEPAPTLLSLLDTCA 295 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSI-NFFIQNPI---------------------- 359 T G RL A + PL D + RL+++ + +P Sbjct: 296 TNMGSRLLANWLHHPLRDRNVLGARLEAVEQLLLPSPSGRGAGGEGRNGEVHTESSLTPA 355 Query: 360 -------LINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKND 412 L + LK S DV R +R+ + P+D++ +RD + + + + D Sbjct: 356 LSQGARELYPQVHDQLKPSVDVERITARIALRSARPRDLSGLRDTLLTLPQLHAALARCD 415 Query: 413 --LPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQ 470 L ++L A+ L + L+KT+ S L R+G + DG D LDE R ++ Sbjct: 416 AALIQQLADALVADHTLVELLQKTIKPEPSSVL----REGSVIADGFDPELDELRGIQTN 471 Query: 471 SKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMS 530 + L+L+ T I LK+++N G++IEV+ ++A + D + RQT+ Sbjct: 472 CGDFLMELELRERARTGIDKLKVEYNRVHGFYIEVSFANADKVPDD------YRRRQTLK 525 Query: 531 NLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISI 590 N+ R+ T EL E++ +A + AL E +E L + + L + IA +D+ Sbjct: 526 NVERYITPELKAFEDKALSANDRALAREKFLYEQLLDQLAPFIPQLQRIAAAIAELDVLA 585 Query: 591 ALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSG 650 A A N+ P + + GRHP+VE + Q F ND L ND Sbjct: 586 TFAERAATLNFSAPQFADDAQINIVKGRHPVVEAQVDQ-----FTPNDTTL---NDAR-- 635 Query: 651 KLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGR 710 + L+TGPNMGGKST++RQ A+I ++A +G +VPA A +G +D++F+R+G++D+LASGR Sbjct: 636 RTLLITGPNMGGKSTYMRQVAIIALLAHVGCFVPAQEAVLGEIDQIFTRIGASDDLASGR 695 Query: 711 STFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLAT 770 STFMVEM E A+IL+ AT++S V++DEIGRGT+T DGL++A+A +L E NR L AT Sbjct: 696 STFMVEMTEAANILHNATDKSLVLVDEIGRGTSTFDGLALAYAIARHLLELNRSYTLFAT 755 Query: 771 HFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVIS 830 H+ ELT L++ K+ N L + I+FLH V G A SYG+QV LAG+PN+VI Sbjct: 756 HYFELTRLAEEFKQLANVHLAAIEHQHSIVFLHSVNEGAASQSYGLQVAALAGVPNSVIR 815 Query: 831 RAYDILKTFEK--LYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPL 888 A L E+ + Q D+ PE E LS ++ L DEMSP Sbjct: 816 SAKKQLVKLEQNSAAQNPQGDLFTAAPEAPEPEEHPLLS--------ALRDLQPDEMSPK 867 Query: 889 TALKTLYAVK 898 AL+ +Y +K Sbjct: 868 EALERIYQLK 877 >gi|284929693|ref|YP_003422215.1| DNA mismatch repair protein MutS [cyanobacterium UCYN-A] gi|284810137|gb|ADB95834.1| DNA mismatch repair protein MutS [cyanobacterium UCYN-A] Length = 854 Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust. Identities = 299/833 (35%), Positives = 473/833 (56%), Gaps = 41/833 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TPM R YI IK SL+ YR+GDF+E FF DA+ S+ +G LT + GK +G+ I + Sbjct: 24 TPMYRHYINIKEEYISSLLLYRVGDFFECFFQDAVTVSKEVGTFLTSKEAGKKIGR-IAL 82 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G P H+ + Y + LI G+ IAIC+Q+E LEA +G +V R V +L+TPGTL +D+ Sbjct: 83 TGFPHHSLDRYAKLLIDRGYSIAICDQVEDSLEALSQGR--MVERRVTKLLTPGTLMDDE 140 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD--RLISDIMRIDPREIIFSE 201 LL P +SN+L+A+ W +A+ DISTG F +T D L S+++R+ P E+I Sbjct: 141 LLVPENSNFLVALTIRDNLWGLAYADISTGEF-CTTQGVDLSNLKSELLRLQPAEVIIPA 199 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVF---------FDHSISESRIADYYNITTVDTFGSF 252 ++ E + A P+ F FD + + ++ + + +++++ G Sbjct: 200 NDIDSGRMIRPGEESSLLIDAFPDCFCYSLRTKTTFDLNTAREKLLNAFKVSSLEGMGCH 259 Query: 253 S-QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS-R 310 + +AA + YI+ TQ+ + T+ P+ ++ L ID R NLEI +T+ S Sbjct: 260 DLPLAISAAGGLLKYIEDTQIDQQLTLQLPKNYNLNDFLIIDYQTRRNLEITKTIKNSIF 319 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 + SLL TI T G R + PL +I R D++ +++ L + ++K+L S Sbjct: 320 KGSLLSTIQKPKTSMGARDLQRWLIEPLLSIERITERQDTVEELVEDITLRHDLKKLLAS 379 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGA---VEKLKKL 427 D+ R +++ + ++ + + + LK+ RG + L+ Sbjct: 380 IHDLERISTKVTSETANARHLSCLANSLLK--------LKDLSKLAHRGKSFYFKALQNT 431 Query: 428 PQSLEKT---LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAE 484 P+ LEK + S L + LP ++GG ++DG +A LD RS + + +++L+ + Sbjct: 432 PKELEKLGIYIRSHLIESLPVKLKEGGIIKDGVNAELDNMRSQIEDDREWLSNLEATERQ 491 Query: 485 ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLE 544 +T I +LK+ ++ + G++I + S AS ++ FI RQT++N RF T EL + E Sbjct: 492 KTGIASLKVSYSKSFGFYISLPRSKAS------QAPAYFIRRQTLTNEERFITPELKERE 545 Query: 545 NRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP 604 RI NA + +E + F L + + ++ ++ ++ IA IDI ++ AI A E+NYCRP Sbjct: 546 VRILNAQKNLKKLEYKVFTELRSKVAKKGYAVYQIAKSIAAIDILLSFAITAVEKNYCRP 605 Query: 605 IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 I + +GRHP+VE+ L S P + S ++ + L +LTGPN GKS Sbjct: 606 QILEDQLLKINNGRHPVVEELLPPGSFVPNSVSLKSSSKVLEEPN--LIILTGPNSSGKS 663 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 +LRQ +I ++AQ GS+VPA+ A IGI D++F+RVG+ D+LA+G+STFMVEM ETA+IL Sbjct: 664 CYLRQIGVIQLLAQAGSFVPATSAQIGIADRIFTRVGAVDDLATGQSTFMVEMNETANIL 723 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR 784 N AT +S ++LDE+GRGT+T DGLSIAWA EYL E + + ATH+HEL +L+ + R Sbjct: 724 NHATEKSLILLDEVGRGTSTFDGLSIAWAIAEYLSEEIGGKTIFATHYHELNELASKVSR 783 Query: 785 FHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILK 837 N V + + +IFLH++ PG A SYGI+V KLAGLP++V +RA I++ Sbjct: 784 VANFQTIVEEKPDSLIFLHQIRPGGAKKSYGIEVAKLAGLPSSVTTRAKKIME 836 >gi|319892317|ref|YP_004149192.1| DNA mismatch repair protein MutS [Staphylococcus pseudintermedius HKU10-03] gi|317162013|gb|ADV05556.1| DNA mismatch repair protein MutS [Staphylococcus pseudintermedius HKU10-03] Length = 865 Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust. Identities = 293/829 (35%), Positives = 454/829 (54%), Gaps = 55/829 (6%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPMM+QY+ IK+ + D+L+F+R+GDFYE+F+DDA+ ASR L ITLTKR I Sbjct: 1 MSNVTPMMKQYLSIKAQHQDALLFFRLGDFYEMFYDDAITASRVLEITLTKRDAKKDNPI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PM GVP H+A+ YI+ LI+ G+++AICEQ+E P R K +V+R VVR++TPGT+ E Sbjct: 61 PMAGVPYHSADSYIETLIQNGYKVAICEQMEDP-----RQVKGMVKREVVRIITPGTVME 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFS 200 + T +NY+++ + +A+++ D+STG K++ + LI++I I P EI+ + Sbjct: 116 KGGVDDTQNNYILSFVKADG-YALSYCDVSTGELKVTHFEDESTLINEITTIRPNEIVVT 174 Query: 201 E--KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS----FSQ 254 E E + + ET+ V + +S+S + I + + S Sbjct: 175 EPLSETLQRQLNMITETITVVEQVSDQNYSVNSLSHPLMHQAIQIVLDYIYDTQKRDMSH 234 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQS 313 +E A+ Y+K +D A+ NLE+ ++ S++ + Sbjct: 235 IEAAVEYKALDYMK-----------------------MDYYAKRNLELTESIRLKSKKGT 271 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T G R + + PL +I R D+++ F+ I + ++ L D Sbjct: 272 LLWLMDKTKTPMGARRLKQWVDRPLIQQAEIAKRHDAVDQFLHYFIERDTLRDYLTEVYD 331 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELR--GAVEKLKKLPQSL 431 + R + R+ G KD+ ++ I + I + L++ E + A+E L L Q Sbjct: 332 IERLVGRVSFGNVNAKDLVQLKHSI-AQIPAIKALLQSIEHEAIAHFNALEPLDDLLQ-- 388 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 LS L D+ P ++GG + G + LD+ K+ +A LQ + E T IK+L Sbjct: 389 --VLSDSLVDEPPLSVKEGGLFKAGFNEELDQYLDASKNGKQWLAQLQAQERERTGIKSL 446 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 KI N GY+IE+T ++ S +R +QT+SN RF T EL + E I A Sbjct: 447 KISFNKVFGYYIEITRANLSQFDPSAFGYER---KQTLSNAERFITDELKEKEAIILGAQ 503 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + A+ +E + F L + E L +++I+ ID + A +A++ NY RP Sbjct: 504 DKAIELEYQLFVALREQVKTYIERLQQQAKIISEIDCLQSFAEIAQQYNYVRPQFSEDKT 563 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 + D RHP+VE+ + ++ NDC L+ ++L+TGPNM GKST++RQ A Sbjct: 564 LKLVDSRHPVVERVM---DYNDYVPNDCLLNTEQ-----FIYLITGPNMSGKSTYMRQVA 615 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 +I IMAQMG++VP A + I D++F+R+G+AD+L SG+STFMVEM+E L AT S Sbjct: 616 IISIMAQMGAFVPCQSATLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALKYATADS 675 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 +I DEIGRGT+T DGL++A A IEY+ ET++ + L +TH+HELT+L + L N + Sbjct: 676 LIIFDEIGRGTSTYDGLALAQAMIEYVAETSQAKTLFSTHYHELTELEQHLPSLKNVHVA 735 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + +IFLHKV G +SYGIQV +LA LP VI+RA IL TFE Sbjct: 736 ADEYQGELIFLHKVKDGAVANSYGIQVAQLADLPEQVIARAQVILDTFE 784 >gi|323144149|ref|ZP_08078785.1| DNA mismatch repair protein MutS [Succinatimonas hippei YIT 12066] gi|322416057|gb|EFY06755.1| DNA mismatch repair protein MutS [Succinatimonas hippei YIT 12066] Length = 871 Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust. Identities = 313/893 (35%), Positives = 495/893 (55%), Gaps = 63/893 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY+EIK P++LVFYR+GDFYELF+DDA AS L +TLT+RG + G IPM G Sbjct: 9 TPMMRQYLEIKKKYPNTLVFYRLGDFYELFYDDAKNASELLDLTLTRRGTNNGDPIPMAG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+ Y+ KLIK+G ICEQI P AK ++ R V +++TPGT+ ++ + Sbjct: 69 VPFHSVEGYLAKLIKLGESAVICEQIGDPATAK-----GMMVRKVSKIITPGTVIDEGIA 123 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD---RLISDIMRIDPREIIFSEK 202 N + + + + + A + + +G FK + + ++ RL+ D + P EI+ E Sbjct: 124 PDRSDNQIACIFKGKRFYGFATLSLGSGKFKTAIAANEKSLRLLLD--KNTPVEILIPEN 181 Query: 203 -ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 ++++A L++ + +A +FD S + + + ++ F E AA Sbjct: 182 LKITNA---LLYDIVCKKKLAP--WYFDFQGSYNLLCKQFGTNSLIGFDIEDLDEGICAA 236 Query: 262 AAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 A+ +Y+K TQ V+ I R++ +++ +D A+ NLE+L L G SLL +D Sbjct: 237 GALLAYVKDTQNVSLQHIKSISRDENSASVILDKCAQRNLELLTNLRGESYGSLLSILDK 296 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G RL I P ++ I RL+ + I + N + K L D+ R +R Sbjct: 297 THTAMGSRLLKRFIVEPSRNNQLIENRLNLVEELINSSEKDN-LSKYLSEIGDLERITAR 355 Query: 381 LKIGRGEPKDIAVIRDG------IRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 + + P+D+A +R+ I+ +N + E + +KL LPQ E Sbjct: 356 IGLNSARPRDLAKLREALFLTPQIKDSLNFIE-------GESFKAFNDKLNPLPQIYE-L 407 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L + ++++ + R+G + DG + LDE R L S + + ++ + T I +LK+ Sbjct: 408 LYNAIAEEPASLLREGNVIADGYNTELDELRELMSGSAKGLKEIEDREKARTGISSLKVN 467 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N GY+I++ + ++ + +D +I RQT+ N RF T EL +LE + NA + + Sbjct: 468 FNQVHGYYIDIPKTHSAKVPED------YIRRQTLKNNERFITPELKELEEKTLNAQSRS 521 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L+IE E +E + + + L N + ++ +D+ ++ A A+ NY RP + N + + Sbjct: 522 LIIEKELYENILQKLQQNLGDLTNLAASLSFLDVILSFAKEAESNNYTRPTLVNESYIEI 581 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 K+GRHP+VE S PF+ N+ +L DK ++ +++GPNMGGKSTF+RQNALI Sbjct: 582 KEGRHPVVESL----SDSPFMTNNLELG--KDK---RIAVISGPNMGGKSTFMRQNALIA 632 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMA++GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+ILN AT QS V+ Sbjct: 633 IMARIGSFVPAKKAIIGDIDRIFTRIGASDDLASGRSTFMVEMEETATILNNATYQSLVL 692 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DE+GRGT+ +G SIA + +EYL E + L +TH+ E+TDL++ N + Sbjct: 693 MDEVGRGTSGEEGSSIAQSIVEYLCEKLKPLTLFSTHYTEITDLAEKFPNAKNLCFNAEE 752 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR--L 852 N I FL+ G S+GI+V KLAGLP VIS A L EK + N ++ Sbjct: 753 KNGQIYFLYHAETGKQSKSFGIEVAKLAGLPYEVISTA---LNKREKTSNFNSNKVKNSQ 809 Query: 853 YYPEIQT-----KESKNNL---SKNDKLFVEKIKCL---NLDEMSPLTALKTL 894 Y+ + +T +++NNL SK +E IK L N++E +P+ A K L Sbjct: 810 YFNKNETVTPVLSKNENNLYNASKRKDNHLELIKFLQKINIEETTPIQAFKIL 862 >gi|28198974|ref|NP_779288.1| DNA mismatch repair protein [Xylella fastidiosa Temecula1] gi|32129765|sp|Q87CI8|MUTS_XYLFT RecName: Full=DNA mismatch repair protein mutS gi|28057072|gb|AAO28937.1| DNA mismatch repair protein [Xylella fastidiosa Temecula1] gi|307580126|gb|ADN64095.1| DNA mismatch repair protein MutS [Xylella fastidiosa subsp. fastidiosa GB514] Length = 868 Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust. Identities = 298/887 (33%), Positives = 483/887 (54%), Gaps = 36/887 (4%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 + + TP+M+QY K+ PD L+F+RMGDFYELF DA A+R L ITLT+RG G Sbjct: 9 KGMAEHTPLMKQYFAAKAEYPDLLLFFRMGDFYELFHQDARKAARLLDITLTQRGSSGGT 68 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVPVH Y+ +LI +G +AICEQI P AK LV R VVR+VTPGT+ Sbjct: 69 PIPMAGVPVHAYEGYLARLIALGESVAICEQIGDPGLAK-----GLVERKVVRIVTPGTI 123 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 TE+ LL LMA++R + + +AW D++ G F ++ + + L +++ R++P E++ Sbjct: 124 TEEALLEERRDTLLMALSRTKNCYGLAWADLAGGRFLVNEVDSEEALEAELARLEPAELL 183 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 +++ + EY N +P FD ++ ++ + + FG + + T Sbjct: 184 LPDED-AWPEYLQQR----NGVRRRPPWLFDADSGRRKLLAFFKLHDLSGFGIENNPQAT 238 Query: 259 AAAAAIS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AAA A+ YI++TQ P + E + + +++A R +LE+ + G +LL Sbjct: 239 AAAGALLGYIEETQKQRLPHLTSITMETVGEAITMNAATRRHLELDTRVDGESRHTLLGV 298 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D ++T GGRL + PL + R ++ I + L N +++ + D+ R Sbjct: 299 LDSTVTPMGGRLLRRWLHRPLRLREVVRQRHAAVGSMIDSD-LDNKLRETFRRLGDMERI 357 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 L+R+ + P+DI+ +RD + + L +D P LR +L + S L Sbjct: 358 LTRVALRSARPRDISTLRDSLSLLPRLRELLNASDSPR-LRVLYAELGE-HDSTASLLVK 415 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 +++ P DGG + D LDE R L + + + + L+ + E + I LK+ +N Sbjct: 416 AVAEQPPLKLTDGGVIAPEYDVELDELRKLSNNADQFLIDLETRERESSGISTLKVGYNR 475 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IE++ A ++ + RQT++N R+ T EL E+++ +A + AL Sbjct: 476 VHGYYIEISKGQAD------KAPVHYTRRQTLTNAERYITEELKAFEDKVLSARDRALAR 529 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E +E L + + Q E L + ++ +D+ + A A+ ++ RP +++++ ++ G Sbjct: 530 EKLLYEQLLDTVGAQLEPLKRCAAALSELDVLVCFAERAQTLDWVRPELEHTSCLHIEGG 589 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE +Q+ F ND L ++ ++TGPNMGGKST++RQNALIV++A Sbjct: 590 RHPVVEAVREQR----FEPNDLYLHPER-----RMLVITGPNMGGKSTYMRQNALIVLLA 640 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GSYVPAS A IG +D++ +R+G+ D+LA G+STFM+EM ET+ IL+ AT QS V++DE Sbjct: 641 YIGSYVPASRALIGPIDRIMTRIGAGDDLARGQSTFMLEMTETSYILHHATAQSLVLMDE 700 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK-----SLKRFHNATLQV 792 IGRGT+T DGL++A A +L NRC L ATH+ ELT L++ L N Sbjct: 701 IGRGTSTYDGLALADAVARHLAHINRCYTLFATHYFELTALAEETYEGGLSGIANVHFDA 760 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 + +E ++F+H V G A+ S+G+QV LAGLP +++A L E+ + + Sbjct: 761 VEHSERLVFMHTVKDGPANRSFGLQVAALAGLPAATVAQARRRLAELEQRGRESHVS-EI 819 Query: 853 YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 E+ + N + E + L+ DE++P AL+ LY +KA Sbjct: 820 TQLELDAPQQCNLFASAPSAAQEALVALHPDELTPKQALEALYRLKA 866 >gi|312130476|ref|YP_003997816.1| DNA mismatch repair protein muts [Leadbetterella byssophila DSM 17132] gi|311907022|gb|ADQ17463.1| DNA mismatch repair protein MutS [Leadbetterella byssophila DSM 17132] Length = 864 Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust. Identities = 296/881 (33%), Positives = 481/881 (54%), Gaps = 44/881 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ +QY +IK+ P +++ +R+GDFYE F +DA+ AS+ LGI LT+R G + + G Sbjct: 7 TPLNKQYNQIKAKYPGAMLLFRVGDFYETFGEDAIKASKILGIVLTRRNNG-GSNDELAG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H+ + Y+ KL++ G R+AIC+Q+E P + K +V+R V LVTPG D +L Sbjct: 66 FPHHSLDTYLPKLVRAGQRVAICDQLEDP-----KTVKGIVKRGVTELVTPGVSFNDNVL 120 Query: 146 SPTDSNYLMAVARIRTEW-AIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 +NYL ++ + +A++DISTG F + + + I P EI++ +K Sbjct: 121 DVRQNNYLASLHFASEDLIGVAFLDISTGEFFTTQGSLAYVDKLIQGFSPAEILYCKKH- 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK-TAAAAA 263 ++ +F N + VF + + ++ ++ + FG + E TAA Sbjct: 180 -KKRFEQVFGEKYNTYTFEDWVF-TYDFAYDQLIQHFKTNNLKGFGVENLQEGVTAAGVI 237 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 + Y+K T+ I R D + +++D NLE+L + L+ +D ++T Sbjct: 238 LQYLKDTEHREVDHINRLTRLDQEQYVWLDRFTIRNLELLFS-PHEGGVPLIDILDQTVT 296 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL + + PL + +I RL+++ +F + ++ + ++LK D+ R +S++ + Sbjct: 297 PMGARLLRKWLVLPLKNKAQIEERLNTVQYFAGDDQVLQNLIQVLKPIGDLERLVSKVAV 356 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 R P+++ ++ + + L + + E+L G + K L + +E+ L DD Sbjct: 357 RRINPREMVQLKKALAQIEPLKELLVGHPSMEKLTGQLNDCKFLVEKIERELR----DDA 412 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 PT GG ++ G DA LDE + K + +Q + +E T I +LKI +N GY++ Sbjct: 413 PTQMNQGGMIKTGVDAPLDELHKIAFSGKDYLVDIQNRESERTGIPSLKIAYNKVFGYYL 472 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EV+++ + ++ +I +QT+ N R+ T EL E +I A + IE F Sbjct: 473 EVSNAHKDKVPQE------WIRKQTLVNAERYITEELKVYEEQILTAESKINEIEFRIFN 526 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L E + ++VI+ +D ++ A +A + Y RP+I +K GRHP++E Sbjct: 527 ELVLTAAEYVNVIQENARVISNLDALLSFARVALKNGYARPVITEEKRLDIKGGRHPVIE 586 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 + L + + ++ ND L D ++ ++TGPNM GKS LRQ ALIV+MAQ+GS+V Sbjct: 587 QQLP--TGESYVPNDLYL----DDEEQQIIIITGPNMAGKSALLRQTALIVLMAQIGSFV 640 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA+ A +GIVDK+F+RVG+ DNL+ G STFMVEM ETASILN ++S VI+DEIGRGT+ Sbjct: 641 PAASAEVGIVDKIFTRVGANDNLSRGESTFMVEMTETASILNNLGDRSLVIMDEIGRGTS 700 Query: 744 TLDGLSIAWATIEYL--HETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 T DG+SIAW+ EYL H+ R R L ATH+HEL +LS R N + V + N ++F Sbjct: 701 TYDGVSIAWSIAEYLHNHKKQRPRTLFATHYHELNNLSNDFPRIKNFNVAVKEMNGKVVF 760 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKE 861 L K+ G ++HS+GI V +LAG+P +V+ RA +IL+ EK + ++ ++ Sbjct: 761 LRKLKEGGSEHSFGIHVAQLAGMPQSVVLRANEILQELEKSEAKEKNKAKI------SEA 814 Query: 862 SKNNLSKN--------DKLFVEKIKCLNLDEMSPLTALKTL 894 KNN N + EKIK ++L+ MSP+ AL L Sbjct: 815 PKNNFQLNFFDPVDPVAETLKEKIKAMDLNAMSPIEALLKL 855 >gi|325103878|ref|YP_004273532.1| DNA mismatch repair protein MutS [Pedobacter saltans DSM 12145] gi|324972726|gb|ADY51710.1| DNA mismatch repair protein MutS [Pedobacter saltans DSM 12145] Length = 870 Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust. Identities = 278/822 (33%), Positives = 459/822 (55%), Gaps = 34/822 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M QY +IK+ P +L+ +R+GDFYE F +DA+ AS+ LGI LTKR I + G Sbjct: 9 TPLMTQYNQIKAKYPGALLLFRVGDFYETFGEDAVKASQILGIVLTKRANGSASHIELAG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H+ Y+ KL++ G R+AIC+Q+E P + K +V+R V LVTPG D ++ Sbjct: 69 FPHHSIETYLPKLVRAGQRVAICDQLEDP-----KSVKGIVKRGVTELVTPGVAYNDNIV 123 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 +NYL + + +A++DISTG F + N + + + P E+IF++ + Sbjct: 124 QQKSNNYLATLHFDKGTIGVAFLDISTGEFLTAQGNAEYIDKLLQSFKPSEVIFAKSK-- 181 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK-----TAA 260 E+ LF + + F + ++ + ++ + ++ FG +EK AA Sbjct: 182 SKEFTELFGGRFYTFILD-DWAFTNDYAQENLLKHFEVNSLKGFG----IEKLNLGIIAA 236 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 A+ Y+ +T+ I R + +++D NLE++ + S ++L+ +D+ Sbjct: 237 GVALHYLNETEHRQLQHITNISRIEEDRYMWLDRFTVRNLELVGS-SNEDAKTLIDVLDH 295 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + + G R+ + + PL + I RLD ++FF ++ L +++ ++ D+ R +S+ Sbjct: 296 TSSAMGARMLRKWVLMPLKNRKPIEERLDVVSFFFKHNELRETLEQHIRQIGDLERLVSK 355 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + + + P++I ++ +R+ I + +N E ++ E++ S+ + + L Sbjct: 356 IGLQKANPREIVQLKRALRA-IEEIKKLCENVDQESVKRIAEQINPCA-SISEKIDKELQ 413 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D P G + DG + LD+ R + K + LQ K AE T I +LKI NN G Sbjct: 414 ADPPVAVAKGKVIADGFNEELDKLRKISYGGKDYLLELQRKEAEATGISSLKIAFNNVFG 473 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y++EV+++ + + +I +QT+ N R+ T EL + E++I A +E + Sbjct: 474 YYLEVSNTHKDKVPTE------WIRKQTLVNAERYITPELKEYEDQILGAEEKIHALETK 527 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F L ++ E + + +IA +D+ + A +A++ Y RP++ + +K GRHP Sbjct: 528 LFSDLLASVAEFIRPIQLNATLIAQLDVLLCFATIAQKNYYVRPVVSDDKVLDIKGGRHP 587 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 ++EK L + +I N L D + ++ ++TGPNM GKS LRQ LIV+MAQMG Sbjct: 588 VIEKNLP--IGEEYITNSVYL----DDETQQIIIITGPNMAGKSALLRQTGLIVLMAQMG 641 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 +VPA AH+GIVDK+F+RVG++DNL+SG STFMVEM ETASILN +++S ++LDEIGR Sbjct: 642 CFVPAKEAHVGIVDKIFTRVGASDNLSSGESTFMVEMNETASILNNLSDRSLILLDEIGR 701 Query: 741 GTATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GT+T DG+SIAWA +E+LH + L ATH+HEL +LS S R N + V + Sbjct: 702 GTSTYDGISIAWAIVEFLHNHPNANAKTLFATHYHELNELSNSFSRIKNFNVTVKEVGNK 761 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 +IFL K++PG ++HS+GI V K+AG+P V+ RA +IL+ E Sbjct: 762 VIFLRKLVPGGSEHSFGIHVAKMAGMPPRVLLRANEILRRLE 803 >gi|74317177|ref|YP_314917.1| DNA mismatch repair protein MutS [Thiobacillus denitrificans ATCC 25259] gi|90109861|sp|Q3SJP0|MUTS_THIDA RecName: Full=DNA mismatch repair protein mutS gi|74056672|gb|AAZ97112.1| MutS 1 protein [Thiobacillus denitrificans ATCC 25259] Length = 850 Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust. Identities = 306/893 (34%), Positives = 465/893 (52%), Gaps = 52/893 (5%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 + TPMM+QY+ IK+ +PD L+FYRMGDFYELFF+DA A+R L ITLT RG G I M Sbjct: 7 AHTPMMQQYLGIKAQHPDMLLFYRMGDFYELFFEDAEKAARLLNITLTTRGASAGSPIKM 66 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H+A Y+ +L+K+G + I EQ+ P +K V R V R+VTPGTLT+ Sbjct: 67 AGVPYHSAEQYLARLLKLGESVVIAEQVGDPA-----ASKGPVERRVSRVVTPGTLTDAG 121 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 LL T +MA+A +AW++++ G F+++ + L + + R+ P EI+ E Sbjct: 122 LLDETRDALIMAIAVAGDVLGVAWLNLAAGRFQVTELDRTALPALLARVRPAEILAHEH- 180 Query: 204 LSHAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFG-SFSQVEKTAAA 261 + + V + + + FD + R+A + + FG + AA Sbjct: 181 ---------LDLAADCPVRRLDAWQFDADGASKRLARQFGSCDLQGFGVAEMHCAIAAAG 231 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 A + YI+ TQ P + E + +D+A R NLE+ TL G +L +D + Sbjct: 232 ALLGYIETTQRTALPHLLSIRAERDSDFVLLDAATRRNLELTETLRGDAAPTLRSVLDTT 291 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +G G RL + PL D + R D+I P + +LK DV R R+ Sbjct: 292 CSGMGTRLLRHWLHHPLRDRAAVAARRDAIGVLAAAPDSAARLADLLKRCADVERIGGRI 351 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP-EELRGAVEKLKKLPQSLEKTLSSMLS 440 + P+D++ +RD + + + LR AV + L + + + Sbjct: 352 ALKNARPRDLSGLRDTLALLPELAAALPTDGARLAALRDAVAATPDVHALLVRAIQPEPA 411 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 L R+GG + DG DA LDE R+L + + L+ + + I LK+++N G Sbjct: 412 SVL----REGGVIADGYDAELDELRALTRDAGAFLLELETRERARSGIATLKVEYNKVHG 467 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 ++IEV + A + D + RQT+ N+ R+ T EL E++ +A AL E Sbjct: 468 FYIEVGRAQAERVPDD------YRRRQTLKNVERYLTPELKAFEDKALSAQERALAREKA 521 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 FE L + +I +L + + +A ID+ + A A C P + +++ GRHP Sbjct: 522 LFEALLDTLIPHVPNLLSIASALAEIDVLASQAERASTLRLCAPEFSDDPCIVIRGGRHP 581 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE ++ FI ND L+ + ++ L+TGPNMGGKST++RQ ALI +MA G Sbjct: 582 VVEAQVEH-----FIPNDVVLN-----RTRQMLLITGPNMGGKSTYMRQVALITLMACCG 631 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 +VPA+ A IG +D++F+R+G++D+LA GRSTFMVEM ETA+IL+ AT S V+LDEIGR Sbjct: 632 LWVPAASARIGAIDQIFTRIGASDDLAGGRSTFMVEMTETANILHSATADSLVLLDEIGR 691 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GT+T DGL++AWA +L R L ATH+ ELT L++ ++ N L + ++ Sbjct: 692 GTSTFDGLALAWAVARHLVSATRAFTLFATHYFELTQLAQEYRQLANVHLDAKEHGADLV 751 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 FLH V G A SYGIQV +LAG+P VI A L+ E L+ + Sbjct: 752 FLHAVEDGPASQSYGIQVARLAGVPGPVIHAARRRLRELEDAQLQPGPQGDLFAAHLPRD 811 Query: 861 ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTLEKYSTDEDSEP 913 E+ + + +++++ L+ D ++P AL LYA+KA T DSEP Sbjct: 812 EAPPHPA------LDQLRELDPDTLTPKAALDMLYALKALT--------DSEP 850 >gi|304383777|ref|ZP_07366236.1| DNA mismatch repair protein MutS [Prevotella marshii DSM 16973] gi|304335301|gb|EFM01572.1| DNA mismatch repair protein MutS [Prevotella marshii DSM 16973] Length = 874 Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust. Identities = 281/828 (33%), Positives = 462/828 (55%), Gaps = 39/828 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK-DI 81 K TPMM+Q+ ++K+ +PD+L+ +R GDFYE + +DA+ A++ LGITLTKR + D Sbjct: 6 KGLTPMMKQFFDLKAKHPDALMLFRCGDFYETYAEDAVAAAKILGITLTKRNNGGNREDT 65 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 M G P H + Y+ KLI+ G R+AIC+Q+E P + K+LV+R + LVTPG Sbjct: 66 EMAGFPHHALDTYLPKLIRAGRRVAICDQLEDP-----KLTKTLVKRGITELVTPGVAMG 120 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 D +L+ ++N+L A+ +T +A++DISTG F D + + P+EI++++ Sbjct: 121 DNVLNYKENNFLAAIHFGKTACGVAFLDISTGEFLTGEGTIDYVEKLLGNFAPKEILYNK 180 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK---- 257 + S ++ T VF D + S ++ ++ + FG VE Sbjct: 181 ERKS--DFARFSGTRYCTFEMDEWVFTDQN-SRQKLLKHFGTKNLKGFG----VEHLNSG 233 Query: 258 -TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 A+ A + Y+++TQ + I R + + +D +LE++ ++ SL+ Sbjct: 234 IIASGAILQYLEQTQHTHIAHITSLARIEEDRYVRLDKFTIRSLELVAPMN-DEGASLID 292 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 ID ++T GGR+ + PL D IN RL + ++ + P + + D+ R Sbjct: 293 IIDKTVTPMGGRMLKRWVVFPLKDEKPINERLGIVEYYFKKPDFRQCLDEQFHRMGDLER 352 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 +S+ +GR P+++ +++ +++ + L+ +N E LR E++ L +S+ + Sbjct: 353 IVSKAAVGRVSPREVVQLKNALQALAPVKTACLYAEN---ENLRRIGERMN-LCESIRER 408 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + + D P GG + DG ++ LDE R + K + +Q + AE T I +LKI Sbjct: 409 IEREICTDPPQLVSKGGVIADGVNSELDELRRIAYSGKDYLLEIQRREAEATGIASLKIG 468 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +NN GY++EV ++ + D ++ +QT++N R+ T EL + E +I A Sbjct: 469 YNNVFGYYLEVRNTYKENVPTD------WVRKQTLANAERYITQELKEYEEKILGAEQKI 522 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L +E F L A+ E + + +IA +D +A A +++E Y P +D+S + Sbjct: 523 LSLEDRLFADLVTAMQEFIPQIQIDANLIAHLDCLLAFAKVSEENRYIMPSVDDSDVIDI 582 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 + GRHP++E L + ++ ND L D ++ ++TGPNM GKS LRQ ALIV Sbjct: 583 RQGRHPVIETQLPL--GEKYVPNDIFL----DSERQQIMIITGPNMAGKSALLRQTALIV 636 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++AQ+G +VPA A IG+VDK+F+RVG++DNL+ G STFMVEM E A+ILN + +S V+ Sbjct: 637 LLAQIGCFVPAESARIGLVDKIFTRVGASDNLSLGESTFMVEMTEAANILNNVSPRSLVL 696 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQV 792 DE+GRGT+T DG+SIAWA +EYLHE R R L ATH+HEL ++ K+ R N + V Sbjct: 697 FDELGRGTSTYDGISIAWAIVEYLHENERAKARTLFATHYHELNEMEKNFARIKNYNVSV 756 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + ++ +IFL + G ++HS+GI V ++AG+P +++ RA ILK E Sbjct: 757 KELDDKVIFLRTLAKGGSEHSFGIHVAQIAGMPKSIVKRANVILKQLE 804 >gi|323464585|gb|ADX76738.1| DNA mismatch repair protein MutS [Staphylococcus pseudintermedius ED99] Length = 865 Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust. Identities = 293/829 (35%), Positives = 454/829 (54%), Gaps = 55/829 (6%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPMM+QY+ IK+ + D+L+F+R+GDFYE+F+DDA+ ASR L ITLTKR I Sbjct: 1 MSNVTPMMKQYLSIKAQHQDALLFFRLGDFYEMFYDDAITASRVLEITLTKRDAKKDNPI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PM GVP H+A+ YI+ LI+ G+++AICEQ+E P R K +V+R VVR++TPGT+ E Sbjct: 61 PMAGVPYHSADSYIETLIQNGYKVAICEQMEDP-----RQVKGMVKREVVRIITPGTVME 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFS 200 + T +NY+++ + +A+++ D+STG K++ + LI++I I P EI+ + Sbjct: 116 KGGVDDTQNNYILSFVKADG-YALSYCDVSTGELKVTHFEDESTLINEITTIRPNEIVVT 174 Query: 201 E--KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS----FSQ 254 E E + + ET+ V + +S+S + I + + S Sbjct: 175 EPLSETLQRQLNMITETITVVEQVSDQNYSVNSLSHPLMHQAIQIVLDYIYDTQKRDMSH 234 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQS 313 +E A+ Y+K +D A+ NLE+ ++ S++ + Sbjct: 235 IEAAVEYKALDYMK-----------------------MDYYAKRNLELTESIRLKSKKGT 271 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T G R + + PL +I R D+++ F+ I + ++ L D Sbjct: 272 LLWLMDKTKTPMGARRLKQWVDRPLIQQAEIAKRHDAVDQFLHYFIERDTLRDYLTEVYD 331 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELR--GAVEKLKKLPQSL 431 + R + R+ G KD+ ++ I + I + L++ E + A+E L L Q Sbjct: 332 IERLVGRVSFGNVNAKDLVQLKHSI-AQIPAIKALLQSIEHEAIAHFNALEPLDDLLQ-- 388 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 LS L D+ P ++GG + G + LD+ K+ +A LQ + E T IK+L Sbjct: 389 --VLSDSLVDEPPLSVKEGGLFKAGFNEELDQYLDASKNGKQWLAELQAQERERTGIKSL 446 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 KI N GY+IE+T ++ S +R +QT+SN RF T EL + E I A Sbjct: 447 KISFNKVFGYYIEITRANLSQFDPSAFGYER---KQTLSNAERFITDELKEKEAIILGAQ 503 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + A+ +E + F L + E L +++I+ ID + A +A++ NY RP Sbjct: 504 DKAIELEYQLFVALREQVKTYIERLQQQAKIISEIDCLQSFAEIAQQYNYVRPQFSEDKT 563 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 + D RHP+VE+ + ++ NDC L+ ++L+TGPNM GKST++RQ A Sbjct: 564 LKLVDSRHPVVERVM---DYNDYVPNDCLLNTEQ-----FIYLITGPNMSGKSTYMRQVA 615 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 +I IMAQMG++VP A + I D++F+R+G+AD+L SG+STFMVEM+E L AT S Sbjct: 616 IISIMAQMGAFVPCQSATLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALKYATADS 675 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 +I DEIGRGT+T DGL++A A IEY+ ET++ + L +TH+HELT+L + L N + Sbjct: 676 LIIFDEIGRGTSTYDGLALAQAMIEYVAETSQAKTLFSTHYHELTELEQHLPSLKNVHVA 735 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + +IFLHKV G +SYGIQV +LA LP VI+RA IL TFE Sbjct: 736 ADEYQGELIFLHKVKDGAVANSYGIQVAQLADLPEQVIARAQVILDTFE 784 >gi|258648891|ref|ZP_05736360.1| DNA mismatch repair protein MutS [Prevotella tannerae ATCC 51259] gi|260850917|gb|EEX70786.1| DNA mismatch repair protein MutS [Prevotella tannerae ATCC 51259] Length = 872 Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust. Identities = 288/828 (34%), Positives = 454/828 (54%), Gaps = 45/828 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRG-KHLGKDIPMC 84 TPMM+Q+ ++K+ +PD+++ +R GDFYE + DA+ A++ LGITLT R K + + M Sbjct: 7 TPMMKQFYDLKAKHPDAVLLFRCGDFYETYAKDAVTAAQVLGITLTHRNNKGRTQSVEMA 66 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G P H + Y+ KLI+ G R+AIC+Q+E P KK LV+R + LVTPG +D + Sbjct: 67 GFPYHALDTYLPKLIRSGFRVAICDQLEDPKLTKK-----LVKRGITELVTPGVALDDTV 121 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI---STSNHDRLISDIMRIDPREIIFSE 201 L +N+L A+ + + IA++DISTG F + ST D+L++D P+E++ Sbjct: 122 LESRKNNFLAALTYGKADLGIAFLDISTGEFLVAEGSTEYIDKLLNDFA---PKEVL--- 175 Query: 202 KELSHAEYKSLFETLGN--VAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKT 258 ++ ET G+ + F + +R+ ++ I ++ FG + T Sbjct: 176 --VTQGRKGKFAETFGSKYFVFELEDWAFSAPTARTRLCKHFEIKSLKGFGVDHLETAIT 233 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 +A A ++Y++ TQ I R + + +D NLE+LR ++ +SLL I Sbjct: 234 SAGAIMAYLELTQHKETGHITRLSRIEEDHFVRMDKFTVRNLELLRPMADD-GRSLLDVI 292 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D +++ G RL + PL I R D + +F + P L DV R + Sbjct: 293 DRTLSPMGARLLRRWLLFPLRSVKMIQQRQDGVEYFFKAPEFAELCTDCLGRVGDVERLV 352 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 S+ +GR P++ +R + S I ++ ++ E++R L ++L + ++ Sbjct: 353 SKAAVGRINPREFQQLRLALES-IALIKRACEHADNEQMRAFGTALDAC-EALRELIAKS 410 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 L D P G + G DA LDE RS+ K + ++ + A T I +LKI NN Sbjct: 411 LVPDPPLLLNRGNVIAAGVDAELDELRSISASGKDYLQQIRDREAAATGIASLKISFNNV 470 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IEV ++ + D +I +QT+ N R+ T EL D E +I A + +IE Sbjct: 471 FGYYIEVRNTYKDQVPAD------WIRKQTLVNAERYITQELKDYEEKILGAEDKISVIE 524 Query: 559 LESFEILSNAIIEQSESLDNASQV----IAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 F N +IE ++ Q+ +A +D A +++A+E NY RP +D ST + Sbjct: 525 TRIF----NELIETTKKFIAPLQLDASTLAALDCLYAFSVVAREYNYIRPSVDESTTLDI 580 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 + GRHP++E L S ++ ND L D ++ ++TGPNM GKS LRQ ALI Sbjct: 581 RAGRHPVIETLLPPGES--YVPNDVRL----DTTKQQIIIITGPNMAGKSALLRQTALIT 634 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++AQ+G++VPA A IG+VDK+F+RVG++DN++ G STFMVEM E A+I+N + +S V+ Sbjct: 635 LLAQVGAFVPAEQAQIGMVDKIFTRVGASDNISMGESTFMVEMSEAANIMNNLSERSLVL 694 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRC--RGLLATHFHELTDLSKSLKRFHNATLQV 792 DE+GRGT+T DG+SIAWA +E+LHE C R L ATH+HEL ++ K +R N + V Sbjct: 695 FDELGRGTSTYDGISIAWAIVEHLHENGTCRPRTLFATHYHELNEMEKLFERVKNWNVSV 754 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N I+FL K+ G ++HS+GI V K+AG+P ++ R+ IL E Sbjct: 755 REVNGRIVFLRKLTRGGSEHSFGIHVAKIAGMPGRIVKRSEQILHDLE 802 >gi|291294833|ref|YP_003506231.1| DNA mismatch repair protein MutS [Meiothermus ruber DSM 1279] gi|290469792|gb|ADD27211.1| DNA mismatch repair protein MutS [Meiothermus ruber DSM 1279] Length = 853 Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust. Identities = 296/880 (33%), Positives = 473/880 (53%), Gaps = 83/880 (9%) Query: 27 PMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI--PMC 84 P++ QY+E++ PD L+ +++GDFYE F +DA SR L +TLT + KD PM Sbjct: 16 PLLEQYVELRDAYPDYLLLFQVGDFYEAFGEDAERLSRALNLTLTHK---TAKDFTTPMA 72 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G+PV + + +++KL+K+G R+A+ +Q+E EA K LVRR V +L+TPGT+ + L Sbjct: 73 GIPVRSVDVHLEKLLKLGFRVAVADQVELAEEADK-----LVRREVTQLLTPGTILRENL 127 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 L P ++NYL A++ + +A +D+STG F+ S + L ++ R P E++ + + Sbjct: 128 LKP-EANYLAAIS-TGDGYGLALLDVSTGEFRGSVLYSKSALYDELFRFRPAEVLLAPEL 185 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 H + F+ V +++ F + ++ + ++ G +A A Sbjct: 186 YHHPAFLQEFQRRFPVMLSEEG--FQDEVGKTALHKQFDPLPA---GLEHPALLRSAGAV 240 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILR-TLSGSR--EQSLLKTIDY 320 ++Y + Q P + R D + + + A LEI + G R E++LL + Sbjct: 241 LAYALRVQENGLPQVRSFVRYDPGAFMQLSEATLRTLEIFEPSFVGDRSEERTLLGVLGL 300 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G RL + PL + + RLD++ +++ +L ++K+L D+ R +R Sbjct: 301 TRTAPGRRLLRAWLRHPLVEEAPLQARLDAVEALVKDGVLRAEVRKVLYRMHDLERLAAR 360 Query: 381 LKIGRGEPKDIAVIR---------DGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSL 431 L GR P+D+A ++ G+ +G+ L L LP+ P ++ Sbjct: 361 LLAGRASPRDLAALQRSLALLPELAGLLAGVGPL-FSLSERLPQ------------PVAV 407 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + +++ L +D P DGG +R+G D LDE R ++ + IA L+ + E+T I NL Sbjct: 408 AEQIAAALVEDPPLKITDGGLIREGFDPELDELRQRAEEGRAWIARLEGEAREKTGIPNL 467 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 K+ +N GY++EVT +++ KD + QT+ + RF+T EL + E +I A Sbjct: 468 KVGYNAVFGYYLEVTRPHYALVPKDWRAL------QTLKDRMRFSTPELKEQERKILQAE 521 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 A+ E F L + + ++ + A+QV+A +D+ ALA A E Y RP Sbjct: 522 TEAIKREYAVFLELREQVAQAADEVRQAAQVLAELDVYAALAEAAVEYGYSRPRFSRDGT 581 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 + GRHP+VE+ S PFI ND +S + +L +LTGPNM GKST+LRQ A Sbjct: 582 LQIVAGRHPVVER------SSPFIPNDLSMS-----PAARLLILTGPNMAGKSTYLRQTA 630 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LI ++AQ+GS+VPA A + + D++++R+G++D++A GRSTFMVEM E A IL AT++S Sbjct: 631 LIALLAQVGSFVPAESATLPLFDRIYTRIGASDDIAGGRSTFMVEMDELAGILQGATSKS 690 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 V+LDEIGRGT+T DGL++AWA EYLH+ R L ATH+ ELT L + NA + Sbjct: 691 LVLLDEIGRGTSTYDGLALAWAACEYLHDQVRAYTLFATHYFELTALPLRMAAARNAHVA 750 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR 851 + G++F H+V+PG A SYG++V +LAGLP V+ RA +L + E Sbjct: 751 AKEEAGGLVFYHQVLPGPASQSYGLEVARLAGLPQAVLQRARSVLDSLEA---------- 800 Query: 852 LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTAL 891 S+ LSK +E++ L+L SPL AL Sbjct: 801 ----------SQKGLSKE---ILEELLQLDLARTSPLEAL 827 >gi|15217092|gb|AAK92501.1|AF400584_1 mismatch repair protein [Acinetobacter sp. AD321] Length = 844 Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust. Identities = 307/867 (35%), Positives = 474/867 (54%), Gaps = 47/867 (5%) Query: 53 ELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIE 112 ELFF+DA A++ LGITLT RGK G+ IPM GVP H A Y+ +L+K G +AICEQ+ Sbjct: 1 ELFFEDAHKAAKLLGITLTHRGKANGEPIPMAGVPYHAAEGYLARLVKAGQTVAICEQVG 60 Query: 113 SPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDIST 172 A RG K+ + R VVR++TPGT+T+D LL S+ L+A+ + + +A +D+S Sbjct: 61 EGESAGSRG-KAPMERKVVRIITPGTITDDALLGSYQSSNLVALCIQQNKIGLALLDLSA 119 Query: 173 GIFKISTSNH--DRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDH 230 IFK+ + ++L ++ R+ P EI+ E + + + + L +PNV F+ Sbjct: 120 SIFKVQEHDFKTEQLAIELSRLMPSEIVVDEDLVDQNILEQIKKQLDCPITKRPNVDFNL 179 Query: 231 SISESRIADYYNITTVDTFG-SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQST 289 + ++ + D + T+ FG + K +AAA I Y K+TQ P I + E Sbjct: 180 NNAQKTLCDQLGVATLSGFGIDHLPLAKASAAALIHYAKETQKTALPHIRSIQLEQSSDF 239 Query: 290 LFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLD 349 + +D R NLEI+ L SL I+ T GGRL + + P+ D+ ++ RLD Sbjct: 240 IALDPITRRNLEIIDPLF-EHGTSLFNLINDCQTAMGGRLLSRTLMQPIRDTALLDARLD 298 Query: 350 SINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKD----------IAVIRDGIR 399 + + +P++ +LK D+ R LSR+ +G P+D + +R + Sbjct: 299 ATEQLLTG-YHESPVRLVLKEIGDIERVLSRVALGSARPRDLVQLRHACAQVPFLRHALL 357 Query: 400 SGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADA 459 I + L DL ++L G ++L +L L S + ++ P RDG + +G D Sbjct: 358 PVIQAQSSALLTDLDQQL-GDFKELHQL-------LISAIVENPPVLLRDGNVIAEGYDG 409 Query: 460 SLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLES 519 LDE R +RD + + + L++K E + I LKI +N GY+IE+T + A ++ Sbjct: 410 ELDELRKIRDHAGQFLIDLEIKERELSGIPTLKIGYNRVSGYYIELTRAQAQ------QA 463 Query: 520 KDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNA 579 + +I RQT+ N R+ T EL E+++ ++ + AL E FE L + + +L Sbjct: 464 PEHYIRRQTLKNAERYITPELKGFEDKVLSSESRALAREKLLFENLLETLRQNIANLQMM 523 Query: 580 SQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDC 639 S IA ID+ A A+ Q++ RP + GRHP+VE S P+ ND Sbjct: 524 SAAIAQIDVLANFAHQARLQHWSRPEFSPEIGIKIHAGRHPVVEAL----SKTPYTPNDT 579 Query: 640 DLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSR 699 L + ++ ++TGPNMGGKSTF+RQ ALI ++A GSYVPA A +G +D++F+R Sbjct: 580 FLDSQH-----RMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPAKAAKLGPIDRIFTR 634 Query: 700 VGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLH 759 +GSAD+L++G+STFMVEM ET+ IL+ AT+QS V++DE+GRGT+T DGLS+AWA + L Sbjct: 635 IGSADDLSTGKSTFMVEMTETSQILHHATHQSLVLMDEVGRGTSTYDGLSLAWACVLDLT 694 Query: 760 ETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVG 819 + +C L ATH+ ELT+L S N + + N +I LHKV G A S+G+QV Sbjct: 695 KRIKCLCLFATHYFELTELG-SEAGIDNYHVTAKEMNGNLILLHKVQHGPASQSHGLQVA 753 Query: 820 KLAGLPNTVISRAYDILKTFEKLYHHN-----QKDM-RLYYPEIQTKESKNNLS-KNDKL 872 KLAG+P VI A LK EK + Q D+ EI+T + + + Sbjct: 754 KLAGIPAGVIKEAQKRLKILEKQQQQHIHAAVQNDLFNAVEHEIETPVIEKIIEIEAQSP 813 Query: 873 FVEKIKCLNLDEMSPLTALKTLYAVKA 899 +E +K +++D ++P AL+ LY++KA Sbjct: 814 ALEMLKQIDVDNLTPRQALEQLYSLKA 840 >gi|253752761|ref|YP_003025902.1| DNA mismatch repair protein MutS [Streptococcus suis SC84] gi|253754586|ref|YP_003027727.1| DNA mismatch repair protein MutS [Streptococcus suis P1/7] gi|253756519|ref|YP_003029659.1| DNA mismatch repair protein MutS [Streptococcus suis BM407] gi|251817050|emb|CAZ52702.1| DNA mismatch repair protein MutS [Streptococcus suis SC84] gi|251818983|emb|CAZ56830.1| DNA mismatch repair protein MutS [Streptococcus suis BM407] gi|251820832|emb|CAR47598.1| DNA mismatch repair protein MutS [Streptococcus suis P1/7] gi|319759179|gb|ADV71121.1| DNA mismatch repair protein MutS [Streptococcus suis JS14] Length = 846 Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust. Identities = 286/817 (35%), Positives = 463/817 (56%), Gaps = 40/817 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK+ PD+ + +RMGDFYELF++DA+ A++ L ++LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKAQYPDAFLLFRMGDFYELFYEDAVEAAQILELSLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A YI L+++GH++AI EQ+E P +A +V+R VV+++TPGT+T+ + Sbjct: 67 VPYHAAQQYIDTLVELGHKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVTDSSKM 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSEKEL 204 DSNYL+A+ R ++A++++D+STG F + S + L +I + RE++ L Sbjct: 122 G-ADSNYLVAIDRQGVQFALSYMDVSTGQFFVTSLDDFTSLCGEIRNLRARELVIG-YAL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E + +F N+ ++ F+ ++E ++ +D S + +EK AA + Sbjct: 180 SEEE-EQVFSNQMNLLLS-----FEDEVTE-------DVQLIDN--SLTDLEKAAAGKLL 224 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT-LSGSREQSLLKTIDYSIT 323 SY+ +TQM + + +I+ L +D A +S+L++L +G + SL +D + T Sbjct: 225 SYLHRTQMRDLSHLQKVVHYEIKDYLQMDYATKSSLDLLENGRTGKKHGSLYWLLDETKT 284 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL I PL D +I R + F+ + + + LK D+ R SR+ Sbjct: 285 AMGMRLLRTWIDRPLIDLKRIENRQAVVQVFLDYFFERSDLVEALKGVYDIERLASRVSF 344 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 G+ PKD+ + + + I N+ + + P L V L +P+ L +SS + + Sbjct: 345 GKTMPKDLLQLSQTLGNIPAIKNILQQINEPA-LGNLVAGLDPIPE-LHALISSAIDPEA 402 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 DG +R G D +LD+ R + + IA ++ K E + I NLKI +N GY+ Sbjct: 403 QGTITDGNIIRTGFDETLDQYRLVMREGAGWIAEIEAKEREASGINNLKIDYNKKDGYYF 462 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 VT+S+ + D F + T+ N R+ T EL +E ++ A + + +E E F Sbjct: 463 HVTNSNLGNVP------DHFFRKATLKNSERYGTEELAKIEGQMLEARDKSANLEYEIFM 516 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 + + + L ++ IA ID+ A A++A++Q+ P + + GRH +VE Sbjct: 517 RIRQEVEKYIGRLQKLARTIATIDVLQAFAVVAEQQHLVCPRFTDQRELTIDRGRHAVVE 576 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 K + +Q+ +I N L+ + L+TGPNM GKST++RQ A+IVIMAQMGSYV Sbjct: 577 KVMGKQT---YIPNSIHLNTDT-----HMQLITGPNMSGKSTYMRQLAVIVIMAQMGSYV 628 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA A + I D +F+R+G+AD+L SG+STFMVEM+E + AT++S ++ DE+GRGTA Sbjct: 629 PADQAELPIFDAIFTRIGAADDLVSGQSTFMVEMMEANKAVRLATDRSLILFDELGRGTA 688 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DG+++A + IEY+H+ + L ATH+HELTDLS++L+ N + + + + FLH Sbjct: 689 TYDGMALAQSIIEYIHDKIGAKTLFATHYHELTDLSQTLEHLENVHVSTLEKDGQVTFLH 748 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 K+ G AD SYGI V K+AG+P ++ RA IL+T E Sbjct: 749 KIAQGPADKSYGIHVAKIAGMPEELLQRADRILQTLE 785 >gi|166364904|ref|YP_001657177.1| DNA mismatch repair protein MutS [Microcystis aeruginosa NIES-843] gi|189083160|sp|B0JFY0|MUTS_MICAN RecName: Full=DNA mismatch repair protein mutS gi|166087277|dbj|BAG01985.1| DNA mismatch repair protein [Microcystis aeruginosa NIES-843] Length = 882 Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust. Identities = 308/841 (36%), Positives = 458/841 (54%), Gaps = 50/841 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TPM + Y+E+K P++L+ YR+GDF+E FF DA++ SR L + LT + GK +G+ + M Sbjct: 31 TPMYQHYVEVKETYPNALLLYRVGDFFECFFQDAVIISRELELVLTSKEGGKGIGR-VAM 89 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H Y + L++ G+ +AIC+Q+E EA K LV R + +L+TPGTLT++ Sbjct: 90 TGVPHHALERYSRLLVEKGYAVAICDQVEDSTEAA--AEKRLVERAITKLLTPGTLTDEG 147 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLIS-DIMRIDPREIIF--- 199 +L+ +N+L AV W +A+ DISTG F + ++ +S ++ R+ P EI+F Sbjct: 148 MLNAKKNNFLAAVVITGENWGLAYSDISTGEFYTTQASDLTALSLELSRLQPSEILFPIN 207 Query: 200 ----------SEK--ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVD 247 EK L S +L +P F + +++R+ Y + +++ Sbjct: 208 APDLNRILRPGEKSDHLPPCLPDSFCYSL------RPQTIFTLTEAKNRLLITYKMRSLE 261 Query: 248 TFGS-FSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL 306 G + AA + YI+ TQ N+ + + I L +D R NLEI +T+ Sbjct: 262 GMGCEHLPLAIRAAGGLLEYIEDTQKANQVPLQPLKTYSISEFLILDGQTRRNLEITQTV 321 Query: 307 -SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQ 365 GS SLL ID + T G R + PL DS I R D+I NP L I+ Sbjct: 322 RDGSFYGSLLWAIDRTCTAMGSRALRRWLLQPLLDSRGIRARQDTIQELKDNPALRQDIR 381 Query: 366 KILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLK 425 + L+ D+ R R+ G +D+ + + ++ L + P ++ L+ Sbjct: 382 QKLREIYDIERLSGRVGAGTANARDLLSLAASLVKLADLAALVASGNSP-----YLKALQ 436 Query: 426 KLPQSLEK---TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRI--IASLQL 480 ++P LEK + + L + P ++GG +R+G DA LD R RD + I +L+ Sbjct: 437 QIPADLEKLGQQVIAHLVESPPLHLKEGGVIREGIDAQLDALR--RDYQEVIDWFKNLET 494 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 E T I NLK+ +N GY+I + S A KD ++ +QT+ N R+ T EL Sbjct: 495 TEKERTGISNLKVSYNKTFGYYISLPRSKADFAPKD------YVRKQTLVNEERYITTEL 548 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 + EN I A + +E E F L + E S + + +A +D+ ALA +A Q Sbjct: 549 KEKENIILTAVDELNKLEYEIFSDLRRQVAEFSPEIREVATKVAALDVLAALAEIAVYQG 608 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 YCRP I + +KDGRHP+VE++L + F+ N +L L +LTGPN Sbjct: 609 YCRPEIADGRLIDIKDGRHPVVEQSL---GAGFFVPNSINLGNQEGLEYPDLIILTGPNA 665 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GKS +LRQ LI ++AQ GS+VPA A I I D++F+RVG+ D+LA+G+STFMVEM ET Sbjct: 666 SGKSCYLRQVGLIQLLAQTGSFVPAKSAKISICDRIFTRVGAVDDLATGQSTFMVEMNET 725 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 A+ILN AT++S V+LDEIGRGTAT DGLSIAW+ EYL + R + ATH+HEL +L+ Sbjct: 726 ANILNHATDRSLVLLDEIGRGTATFDGLSIAWSVAEYLATVLQSRTIFATHYHELNELAS 785 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 L+ N + V + I+FLH+V PG AD SYGI+ G+LAGLP +VI RA ++ E Sbjct: 786 ILENVANYQVTVKELPHEIVFLHQVRPGGADKSYGIEAGRLAGLPTSVIDRAMQVMGQIE 845 Query: 841 K 841 K Sbjct: 846 K 846 >gi|225012278|ref|ZP_03702715.1| DNA mismatch repair protein MutS [Flavobacteria bacterium MS024-2A] gi|225003833|gb|EEG41806.1| DNA mismatch repair protein MutS [Flavobacteria bacterium MS024-2A] Length = 863 Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust. Identities = 292/887 (32%), Positives = 488/887 (55%), Gaps = 49/887 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M+QY IK+ PD+L+ +R+GDFYE F DA+ A+ LGI LTKRG +I + G Sbjct: 8 TPLMKQYNRIKAKYPDALLLFRVGDFYETFGADAVKAAGILGIILTKRGAGSASEIELAG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H+ N Y+ KL+K G R+AIC+Q+E P + K++V+R V L+TPG D +L Sbjct: 68 FPHHSLNTYLPKLVKAGCRVAICDQLEDP-----KMTKTIVKRGVTELITPGVSLHDDVL 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE--KE 203 NYL AV+ +W ++++DISTG F ++ +++ + P E++ + K+ Sbjct: 123 DQKKHNYLAAVS-FDKKWGVSFLDISTGDFWVAEGTEEQIEQLLQSFAPSEVLVPKPKKK 181 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAA 262 L +Y + + F+ ++ ++ ++ +++ FG V +AA A Sbjct: 182 LFLEQYGLQYHCF-----YMEDWAFELGTAQEKLTTHFQTNSLEGFGVQKYTVGISAAGA 236 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 + Y+ + Q I + +++D + NLE+ ++ + L+ ID++ Sbjct: 237 VLHYLTQAQHRKLQHITRILPIAQEGFVWLDRFTQRNLELFQS-THPEGIPLISIIDHTQ 295 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGRL +A PL + +I +R + + FI+ + ++ L + D+ R ++++ Sbjct: 296 TAMGGRLLRRWLAFPLKEQQQIESRHEIVEAFIEQEEISQYTEQALSNIIDIERVMAKIA 355 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ--SLEKTLSSMLS 440 + P+ + ++D + S + L L+ ++ E+LK + ++ + + Sbjct: 356 TEKISPRALYQLQDSL-SEVEGLKKQLEKGSNFTIK---EQLKTISSCAAIISLIQQTIH 411 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 + P G + +G + LD R LRDQS+ + ++ + E ++I +LKI NN G Sbjct: 412 PEAPVLVSKGKVIAEGFSSDLDALRGLRDQSQSHLDAMLERETERSQIPSLKIAFNNVFG 471 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IEV ++ + +D +I +QT+ N R+ T EL E I A + + +E + Sbjct: 472 YYIEVRNTHKDKVPED------WIRKQTLVNAERYITEELKTFETEILQAGDRIMALEQQ 525 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 + L + + E L + +A D+ A A + NYCRP + T ++ RHP Sbjct: 526 LYAELIQHLQKDLEVLKQNANAVAQWDVLSCFAKTALKNNYCRPTLTQGTELELRGARHP 585 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 ++E+ L + P+IAND +L D+ + ++ ++TGPNM GKS LRQ ALI ++AQ+G Sbjct: 586 VIEQQLPLGT--PYIANDLEL----DRETQQIMMITGPNMSGKSAILRQTALISLLAQLG 639 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 SYVPA+ A +G+VDK+F+RVG++DN++ G STFMVEM ETASILN ++ S V+LDEIGR Sbjct: 640 SYVPATQATLGVVDKIFTRVGASDNISMGASTFMVEMNETASILNNISDHSLVLLDEIGR 699 Query: 741 GTATLDGLSIAWATIEYLHETN-RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 GT+T DG+SIAWA EYLHE R + L ATH+HEL ++++ R N + + ++ + + Sbjct: 700 GTSTYDGISIAWAIAEYLHEHPFRPKVLFATHYHELNEMTQRYSRIKNFNVSIKEAKDSV 759 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 +FL K+IPG + HS+GI V K+AG+P V+ A D LK E + L E Sbjct: 760 LFLRKLIPGGSAHSFGIHVAKMAGMPQHVLRSAQDKLKVLEASH-------GLKKSEKAE 812 Query: 860 KESKNNL-----SKNDKLFV---EKIKCLNLDEMSPLTALKTLYAVK 898 K+S+ NL + +D L ++IK L++D ++P+ AL L +K Sbjct: 813 KDSEENLQLSFFNLDDPLLEALRDEIKSLDIDTLTPVEALMQLNQIK 859 >gi|146321975|ref|YP_001201686.1| DNA mismatch repair protein MutS [Streptococcus suis 98HAH33] gi|189083200|sp|A4W4J7|MUTS_STRS2 RecName: Full=DNA mismatch repair protein mutS gi|145692781|gb|ABP93286.1| Mismatch repair ATPase (MutS family) [Streptococcus suis 98HAH33] gi|292559384|gb|ADE32385.1| MutS-1 protein [Streptococcus suis GZ1] Length = 847 Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust. Identities = 286/817 (35%), Positives = 463/817 (56%), Gaps = 40/817 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK+ PD+ + +RMGDFYELF++DA+ A++ L ++LT R K+ IPM G Sbjct: 8 SPGMQQYLDIKAQYPDAFLLFRMGDFYELFYEDAVEAAQILELSLTSRNKNAENPIPMAG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A YI L+++GH++AI EQ+E P +A +V+R VV+++TPGT+T+ + Sbjct: 68 VPYHAAQQYIDTLVELGHKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVTDSSKM 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSEKEL 204 DSNYL+A+ R ++A++++D+STG F + S + L +I + RE++ L Sbjct: 123 G-ADSNYLVAIDRQGVQFALSYMDVSTGQFFVTSLDDFTSLCGEIRNLRARELVIG-YAL 180 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E + +F N+ ++ F+ ++E ++ +D S + +EK AA + Sbjct: 181 SEEE-EQVFSNQMNLLLS-----FEDEVTE-------DVQLIDN--SLTDLEKAAAGKLL 225 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT-LSGSREQSLLKTIDYSIT 323 SY+ +TQM + + +I+ L +D A +S+L++L +G + SL +D + T Sbjct: 226 SYLHRTQMRDLSHLQKVVHYEIKDYLQMDYATKSSLDLLENGRTGKKHGSLYWLLDETKT 285 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL I PL D +I R + F+ + + + LK D+ R SR+ Sbjct: 286 AMGMRLLRTWIDRPLIDLKRIENRQAVVQVFLDYFFERSDLVEALKGVYDIERLASRVSF 345 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 G+ PKD+ + + + I N+ + + P L V L +P+ L +SS + + Sbjct: 346 GKTMPKDLLQLSQTLGNIPAIKNILQQINEPA-LGNLVAGLDPIPE-LHALISSAIDPEA 403 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 DG +R G D +LD+ R + + IA ++ K E + I NLKI +N GY+ Sbjct: 404 QGTITDGNIIRTGFDETLDQYRLVMREGAGWIAEIEAKEREASGINNLKIDYNKKDGYYF 463 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 VT+S+ + D F + T+ N R+ T EL +E ++ A + + +E E F Sbjct: 464 HVTNSNLGNVP------DHFFRKATLKNSERYGTEELAKIEGQMLEARDKSANLEYEIFM 517 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 + + + L ++ IA ID+ A A++A++Q+ P + + GRH +VE Sbjct: 518 RIRQEVEKYIGRLQKLARTIATIDVLQAFAVVAEQQHLVCPRFTDQRELTIDRGRHAVVE 577 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 K + +Q+ +I N L+ + L+TGPNM GKST++RQ A+IVIMAQMGSYV Sbjct: 578 KVMGKQT---YIPNSIHLNTDT-----HMQLITGPNMSGKSTYMRQLAVIVIMAQMGSYV 629 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA A + I D +F+R+G+AD+L SG+STFMVEM+E + AT++S ++ DE+GRGTA Sbjct: 630 PADQAELPIFDAIFTRIGAADDLVSGQSTFMVEMMEANKAVRLATDRSLILFDELGRGTA 689 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DG+++A + IEY+H+ + L ATH+HELTDLS++L+ N + + + + FLH Sbjct: 690 TYDGMALAQSIIEYIHDKIGAKTLFATHYHELTDLSQTLEHLENVHVSTLEKDGQVTFLH 749 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 K+ G AD SYGI V K+AG+P ++ RA IL+T E Sbjct: 750 KIAQGPADKSYGIHVAKIAGMPEELLQRADRILQTLE 786 >gi|182681688|ref|YP_001829848.1| DNA mismatch repair protein MutS [Xylella fastidiosa M23] gi|182631798|gb|ACB92574.1| DNA mismatch repair protein MutS [Xylella fastidiosa M23] Length = 858 Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust. Identities = 298/885 (33%), Positives = 482/885 (54%), Gaps = 36/885 (4%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + TP+M+QY K+ PD L+F+RMGDFYELF DA A+R L ITLT+RG G I Sbjct: 1 MAEHTPLMKQYFAAKAEYPDLLLFFRMGDFYELFHQDARKAARLLDITLTQRGSSGGTPI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PM GVPVH Y+ +LI +G +AICEQI P AK LV R VVR+VTPGT+TE Sbjct: 61 PMAGVPVHAYEGYLARLIALGESVAICEQIGDPGLAK-----GLVERKVVRIVTPGTITE 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFS 200 + LL LMA++R + + +AW D++ G F ++ + + L +++ R++P E++ Sbjct: 116 EALLEERRDTLLMALSRTKNCYGLAWADLAGGRFLVNEVDSEEALEAELARLEPAELLLP 175 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 +++ + EY N +P FD ++ ++ + + FG + + TAA Sbjct: 176 DED-AWPEYLQQR----NGVRRRPPWLFDADSGRRKLLAFFKLHDLSGFGIENNPQATAA 230 Query: 261 AAAIS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A A+ YI++TQ P + E + + +++A R +LE+ + G +LL +D Sbjct: 231 AGALLGYIEETQKQRLPHLTSITMETVGEAITMNAATRRHLELDTRVDGESRHTLLGVLD 290 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 ++T GGRL + PL + R ++ I + L N +++ + D+ R L+ Sbjct: 291 STVTPMGGRLLRRWLHRPLRLREVVRQRHAAVGSMIDSD-LDNKLRETFRRLGDMERILT 349 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ + P+DI+ +RD + + L +D P LR +L + S L + Sbjct: 350 RVALRSARPRDISTLRDSLSLLPRLRELLNASDSPR-LRVLYAELGE-HDSTASLLVKAV 407 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 ++ P DGG + D LDE R L + + + + L+ + E + I LK+ +N Sbjct: 408 AEQPPLKLTDGGVIAPEYDVELDELRKLSNNADQFLIDLETRERESSGISTLKVGYNRVH 467 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IE++ A ++ + RQT++N R+ T EL E+++ +A + AL E Sbjct: 468 GYYIEISKGQAD------KAPVHYTRRQTLTNAERYITEELKAFEDKVLSARDRALAREK 521 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 +E L + + Q E L + ++ +D+ + A A+ ++ RP +++++ ++ GRH Sbjct: 522 LLYEQLLDTVGAQLEPLKRCAAALSELDVLVCFAERAQTLDWVRPELEHTSCLHIEGGRH 581 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE +Q+ F ND L ++ ++TGPNMGGKST++RQNALIV++A + Sbjct: 582 PVVEAVREQR----FEPNDLYLHPER-----RMLVITGPNMGGKSTYMRQNALIVLLAYI 632 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPAS A IG +D++ +R+G+ D+LA G+STFM+EM ET+ IL+ AT QS V++DEIG Sbjct: 633 GSYVPASRALIGPIDRIMTRIGAGDDLARGQSTFMLEMTETSYILHHATAQSLVLMDEIG 692 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK-----SLKRFHNATLQVSD 794 RGT+T DGL++A A +L NRC L ATH+ ELT L++ L N + Sbjct: 693 RGTSTYDGLALADAVARHLAHINRCYTLFATHYFELTALAEETYEGGLSGIANVHFDAVE 752 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 +E ++F+H V G A+ S+G+QV LAGLP +++A L E+ + + Sbjct: 753 HSERLVFMHTVKDGPANRSFGLQVAALAGLPAATVAQARRRLAELEQRGRESHVS-EITQ 811 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 E+ + N + E + L+ DE++P AL+ LY +KA Sbjct: 812 LELDAPQQCNLFASAPSAAQEALVALHPDELTPKQALEALYRLKA 856 >gi|115299209|sp|Q5ZUJ3|MUTS_LEGPH RecName: Full=DNA mismatch repair protein mutS gi|189083211|sp|A5ICW2|MUTS_LEGPC RecName: Full=DNA mismatch repair protein mutS Length = 846 Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust. Identities = 292/828 (35%), Positives = 466/828 (56%), Gaps = 49/828 (5%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S TPMM+QY+ IK+ PD L+FYRMGDFYELFFDDA AS+ L +TLT RG+ K IPM Sbjct: 4 SHTPMMQQYLRIKTDYPDMLLFYRMGDFYELFFDDAKRASQLLDLTLTHRGQSADKPIPM 63 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H +Y+ +L+K G +AICEQI P +K V R V R++TPGT+T++ Sbjct: 64 AGVPYHAVENYLARLLKKGESVAICEQIGDP-----ATSKGPVERQVTRIITPGTVTDEA 118 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSE 201 LL N L+A+ + + IAW+D+ G F + T H +L ++++R+ P E++ E Sbjct: 119 LLDARKDNILLAIHTQKQKIGIAWVDLGGGRFHLQELTEEH-QLNAELVRLQPAELLCKE 177 Query: 202 KELSHAEYKSLFETLGNVAVA-QPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTA 259 L N AV +P FD S + + + +++T + FG + A Sbjct: 178 S-------TPLPSFCSNFAVKFRPGWEFDASNAHKLLCEQFSVTDLSAFGEQNYPTALIA 230 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A A ++Y+K TQ + P + E + L +D++ + +LE+ + G E LL +D Sbjct: 231 AGALLAYLKTTQKQSLPHLTTLTLEQSEDYLQLDASTQKHLELFENIHGGGEHCLLSILD 290 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSIN--FFIQNPILINPIQKILKSSPDVPRS 377 + G RL + PL I TR +I F+Q + + +++K DV R Sbjct: 291 KTACAMGSRLLKRWLGKPLKQHAIIQTRQQAIKEIIFLQQDV---SLHQLIKQCADVERI 347 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKK---LPQSLE 432 +SR+ + P+D+ S + L L + ++L E + ++KK L+ Sbjct: 348 VSRIALKSARPRDLV-------SLLQTLTLLPAIHDELQENKSLLINEIKKEISPLPLLQ 400 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 + L + + D+ P RDGG + G D LDE R+L + + L+ + T + LK Sbjct: 401 QLLETAIIDNPPMLIRDGGVIAPGFDEELDELRNLSSNAHETLVKLEQEEKNRTGLSTLK 460 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 + +N+ G++IE++ + A + F +QT+ N+ R+ T EL E+++ +A + Sbjct: 461 LGYNSVQGFYIELSKAQAQ------NAPPHFHRKQTLKNVERYITPELKLFEDKVLSAQS 514 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 AL E ++ L I + L + ++ +A +D+ + LA A+ N+ P + + Sbjct: 515 KALAREKWLYDNLLEEIQQYIPELSDLAKSLAQLDVLVTLAERAQSLNWNCPNLVPESGI 574 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 +++ GRHP++E L+++ FIAND +L PN + L+TGPNMGGKST++RQ AL Sbjct: 575 MIQAGRHPVIEPLLQER----FIANDLELK-PNQN----MLLITGPNMGGKSTYMRQTAL 625 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 IV++A +GS+VPA +G +D++F+R+G++D+L+SGRSTFMVEM ETA IL QAT+QS Sbjct: 626 IVLLAHIGSFVPADKVTLGPLDRIFTRIGASDDLSSGRSTFMVEMTETAQILRQATSQSL 685 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 V++DEIGRGT+T DG+++A+A+ +L T + L +TH+ ELT+L K N LQ Sbjct: 686 VLIDEIGRGTSTYDGMALAYASCAFLASTIKAYTLFSTHYLELTELPKEFSCIRNVHLQA 745 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 S I+FL++V G A+ SYG++V +LAG+P V+ A++ L + Sbjct: 746 SIKTGQIVFLYRVEEGCANRSYGLEVAELAGIPKEVLKLAHEHLNQIQ 793 >gi|282856372|ref|ZP_06265651.1| DNA mismatch repair protein MutS [Pyramidobacter piscolens W5455] gi|282585743|gb|EFB91032.1| DNA mismatch repair protein MutS [Pyramidobacter piscolens W5455] Length = 860 Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust. Identities = 297/877 (33%), Positives = 468/877 (53%), Gaps = 51/877 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM+ QY K+ PD ++F+RMGDF+E FF+DA L SR L I LT R + K++PM G Sbjct: 16 TPMLEQYFYWKNKYPDCVLFFRMGDFFECFFEDAKLVSRELDIALTARDAN--KNMPMAG 73 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT-LTEDQL 144 VP H + Y +LI+ G++IA+CEQ+ P ++LV R VV+++TPGT + E+ Sbjct: 74 VPHHAVDQYAARLIEKGYKIAVCEQMTPP------DGRTLVDREVVKILTPGTFIPEEGT 127 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 + + ++ L+ R W + ++ S ++ T + S ++ PREI+ Sbjct: 128 VDSSLASLLLGQDR----WTVGFLTPSASTVQVGTFSPQEAWSVLLSFAPREILIPRGR- 182 Query: 205 SHAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 Y+ E A ++ + FD I +R+ +N+ +++ FG + A +A Sbjct: 183 ---GYREKVEANPGWAYSEMSAEDFDPEIGLARLCQLWNVNSLEGFGLRRGDPRIGAVSA 239 Query: 264 -ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 +SY ++T I + + + +D ++NL++ E SL + ++ Sbjct: 240 LVSYAEETSFSKAAHIRSISQILPEGFMHLDWHTQNNLDLW-----GGEASLFECMNECA 294 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G +L + IA PL KIN RLDS+ + + + ++L+ DV R+++RL Sbjct: 295 TPFGKKLLHDWIARPLCSIEKINERLDSVQELYAHEDISRALAELLEKCRDVERAIARLH 354 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 + P+D+ IRD + I L E R A L L L + Sbjct: 355 MKSANPRDLGAIRDTLDVHPEI-----GAALGEMCRSAALPAPGELAELRARLDRFLLPE 409 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 LP G G D LD+ RSL D + + + I LK+ +N G++ Sbjct: 410 LPRSLSLGAIAAPGCDEELDQWRSLGDSGDAWLEDFAEREKKRLGIAKLKVGYNKVYGFY 469 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IE++ + A ++ E ++ +QT+ N R+ + EL + E R A + IE F Sbjct: 470 IEISRAKA----ENTEIPPEYVRKQTLVNAERYISPELKEYEERRLQADSKIAEIEQRIF 525 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 + L+ A +E+++++ ++ +D+ + A A+E+ YCRP + +++GRHP+V Sbjct: 526 DELTAACLERTDAIQRLGHALSKLDVLNSFARTARERGYCRPEVVEERVLEIREGRHPMV 585 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 E+ L+ Q P I ND + S + ++TGPNM GKST+LR A++ IMAQ GSY Sbjct: 586 ERALRGQ---PCIPNDLKMDL-----SRRTAIVTGPNMAGKSTYLRMAAILQIMAQAGSY 637 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA+ A + + D+LF+R+G+ D LA G STFMVEM+ETA+IL+ T +S VILDEIGRGT Sbjct: 638 VPAASARLPLTDRLFTRIGARDELARGNSTFMVEMMETANILHNVTARSEVILDEIGRGT 697 Query: 743 ATLDGLSIAWATIEYLHETNRCR----GLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 +T DG+SIAW+ IEYLH N C L ATH+HELTDL K++ N ++ V ++ EG Sbjct: 698 STYDGMSIAWSVIEYLH--NLCGVQPFVLFATHYHELTDLEKTMPGLFNLSMGVEETEEG 755 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 + FLHK+ G AD SYGI+V ++AGLP V+ RA++IL+ E D + P Q Sbjct: 756 VRFLHKIQSGPADRSYGIEVARIAGLPRVVLRRAHEILERLEAEPSEPHNDANRFAPSAQ 815 Query: 859 TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 S +LS + F+E++ L+ D M+P AL +Y Sbjct: 816 V--SMFDLSGD--AFIEEVASLDPDRMTPRDALGRIY 848 >gi|297584115|ref|YP_003699895.1| DNA mismatch repair protein MutS [Bacillus selenitireducens MLS10] gi|297142572|gb|ADH99329.1| DNA mismatch repair protein MutS [Bacillus selenitireducens MLS10] Length = 855 Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust. Identities = 308/897 (34%), Positives = 497/897 (55%), Gaps = 69/897 (7%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD-IP 82 ++TPMM QY+ IK+ D+ +F+R+GDFYELFF+DA A++ L ITLT RGK G+D IP Sbjct: 2 ANTPMMEQYLRIKNDYQDAFLFFRLGDFYELFFEDAKRAAKELEITLTARGK--GEDKIP 59 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP H++ YI++LI+ G ++AICEQ E P +AK +VRR VV+++TPGT+ + Sbjct: 60 MCGVPHHSSKQYIRQLIEKGFKVAICEQTEDPAQAK-----GVVRREVVQVITPGTVMDT 114 Query: 143 QLLSPTDSNYLMAVARI--RTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIF 199 ++N+L+A++ E A+A +D +TG F+++ ++D LIS++ RE++ Sbjct: 115 GAFDDKENNFLIALSESSDNRETALAALDTTTGEFRLTKLDSNDALISELAVYQCREVVI 174 Query: 200 SEKELSHAEYKSLFETLG---NVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 + + +L E +G + P H++S ++ DY + D F V Sbjct: 175 DDS-IDEDALNALIEPMGMTVSKVTITPGSSPPHAVS--KVEDYELLRVADVL--FHYVG 229 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLL 315 TA A ++ QM + Q+ + +D+ ++ NLE+ TL R+Q SLL Sbjct: 230 HTAGGA----LEHVQMADVYIR--------QAYMHMDAHSKRNLELTGTLRDRRKQGSLL 277 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSI----NFFIQNPILINPIQKILKSS 371 ID + T GGRL + I PL + +I++R + ++F + L +Q + Sbjct: 278 GVIDETSTAMGGRLLKQWINKPLLNIDQISSRQRIVRSLMDYFFERQSLKTALQGVY--- 334 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQ 429 D+ R R+ G +D ++ + IL+L + D L E +L + Sbjct: 335 -DLERLSGRVAFGNVNGRDFIQLKHSLEKVPQILDLIRDIAGDDSMPLIEGAETCDELRE 393 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 LE ++ ++ P +G L+DG D LD R K IA L+ + T IK Sbjct: 394 LLEVSIQ----ENCPVSITEGDLLKDGYDEQLDLYREAMSNGKSWIAELERQERAHTGIK 449 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 +LK+ N GY+IEVT ++ + L + R+ +QT+SN R+ T EL + E I Sbjct: 450 SLKVGFNKVFGYYIEVTKANIAAL-----PEGRYERKQTLSNAERYITEELKEKEQLILE 504 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 A ++ +E E F + + + L ++ I+ +D+ ++ A ++++ Y +P + + Sbjct: 505 AEEKSVKLEHELFLEIRDRVKAYIRPLQKLAKTISAVDVLVSFAEVSEQNGYVQPTLKAN 564 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 V GRHP+VE + ++AND L+ DK+ + L+TGPNM GKST++RQ Sbjct: 565 GPVKVIHGRHPVVETMIDHGD---YVAND--LTMDEDKD---ILLITGPNMAGKSTYMRQ 616 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 A + I+AQ+G +VPA A + + D++F+R+G+AD+LA G+STFMVEM+ET L AT Sbjct: 617 LAHLSILAQIGCFVPADEAELPVFDQIFTRIGAADDLAQGQSTFMVEMLETRQALKHATR 676 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 QS ++LDEIGRGT+T DG+S+A A IEY+H+T + + L +TH+HELT L+ +L+R HN Sbjct: 677 QSLILLDEIGRGTSTYDGMSLAQAVIEYVHDTVQAKTLFSTHYHELTQLADNLERCHNVH 736 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH---- 845 + + + ++FLHKVI G AD SYGI V +LA LP VI RA ++L FE Sbjct: 737 VAAREEDGEVVFLHKVIDGPADRSYGIYVAQLAELPREVIERAKELLADFEAQAQEVSTS 796 Query: 846 ----NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + +D ++ + ES+ + +K + I+ LNL ++P+ A++ L +K Sbjct: 797 SAVPSARDEQIPLFDASVMESER--TGKEKEVLAAIQNLNLLHLTPIQAIQILDDLK 851 >gi|86130732|ref|ZP_01049331.1| DNA mismatch repair protein MutS [Dokdonia donghaensis MED134] gi|85818143|gb|EAQ39303.1| DNA mismatch repair protein MutS [Dokdonia donghaensis MED134] Length = 863 Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust. Identities = 304/889 (34%), Positives = 490/889 (55%), Gaps = 41/889 (4%) Query: 29 MRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPV 88 M+QY IK+ PD+L+ +R+GDFYE F +DA+ A+ L ITLT R G+ + G P Sbjct: 1 MQQYNGIKAKYPDALLLFRVGDFYETFGEDAVKAAAILNITLTNRNNG-GERTELAGFPH 59 Query: 89 HTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPT 148 H+ N Y+ KL+K G R+AIC+Q+E P + KK +V+R V LVTPG D +LS Sbjct: 60 HSLNTYLPKLVKAGCRVAICDQLEDPKQTKK-----IVKRGVTELVTPGVAMNDDILSAK 114 Query: 149 DSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHAE 208 +N+L AV + + ++++D+STG + + + + + P E++ +S A+ Sbjct: 115 TNNFLGAVYFEKDKVGVSFLDVSTGEYLTAQGDVAYVDKLLQNFTPSELL-----VSKAQ 169 Query: 209 YKSLFETLG--NVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAIS 265 K E+ G Q + F + + ++++ ++ FG AA AA+ Sbjct: 170 KKKFIESYGPDYHTFYQEDWVFHIDYARESLHKHFDVKSLKGFGVEHLTAGVIAAGAALH 229 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y+ +TQ I R +++D NLE+ + SG + +L+ ID + + Sbjct: 230 YLGETQHHKLQHITSISRIAADDYVWMDRFTIRNLELYNSASGVKAITLIDIIDKTTSAM 289 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 GGRL +A PL +I R + ++F N + + +Q +K D+ R +S++ + Sbjct: 290 GGRLLKRWLALPLKRVDEIKRRHEVVSFLSDNGNIFDKMQGHIKQIGDLERLISKVATAK 349 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPT 445 P+++ +++ + + + I L D E L+ E+L+ + L + L ++ P Sbjct: 350 ISPREVIQLKNSLEAIVPIKTLASGTD-NESLKIIGEQLQNC-EVLRSKIKETLREEAPV 407 Query: 446 FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEV 505 GG + G LD+ R+L K + + + E T I +LKI NN GY+IEV Sbjct: 408 SIVKGGAIAPGFHKELDDLRALSQGGKDYLEKMLERETERTGITSLKIASNNVFGYYIEV 467 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF-EI 564 ++ KD + + +I +QT+ N R+ T EL + E +I A IE + F E+ Sbjct: 468 RNTH-----KD-KVPEEWIRKQTLVNAERYITDELKEYEGKILGAEERIQGIEQQLFAEL 521 Query: 565 LS--NAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 +S I Q ++ NA+Q IA +D + LA+E NY RP +D S +K+GRHP++ Sbjct: 522 VSWVGGFIPQVQA--NATQ-IAQLDCLLGFTQLARENNYVRPTLDESQVIDIKEGRHPVI 578 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 EK L + ++ ND L D ++ ++TGPNM GKS LRQ ALIV++AQMGS+ Sbjct: 579 EKQLPL--GEAYVTNDVYL----DSADQQMIMITGPNMSGKSAILRQTALIVLLAQMGSF 632 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA AHIG+VDK+F+RVG++DN++ G STFMVEM ETASILN +++S V+LDEIGRGT Sbjct: 633 VPAQAAHIGLVDKIFTRVGASDNISMGESTFMVEMNETASILNNLSDRSLVLLDEIGRGT 692 Query: 743 ATLDGLSIAWATIEYLHE-TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 +T DG+SIAWA EYLHE R + L ATH+HEL ++ ++ +R N + V + + ++F Sbjct: 693 STYDGISIAWAISEYLHEHRGRPKTLFATHYHELNEMCETFERIKNYNVSVKELKDNVLF 752 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKE 861 L K++PG + HS+GI V K+AG+P V+ RA ++ EK H +++ + +E Sbjct: 753 LRKLVPGGSAHSFGIHVAKMAGMPQQVLRRATKMMGKLEK--SHGSEELTGTLKDAAEEE 810 Query: 862 SKNNLSKNDKLFVEKIK----CLNLDEMSPLTALKTLYAVKAWTLEKYS 906 + + D +E+IK +++D ++P+ AL L +K ++K S Sbjct: 811 MQLSFFNLDDPLLEEIKEEILHIDIDTLTPVEALMKLNEIKRMLVKKKS 859 >gi|312891430|ref|ZP_07750947.1| DNA mismatch repair protein MutS [Mucilaginibacter paludis DSM 18603] gi|311296124|gb|EFQ73276.1| DNA mismatch repair protein MutS [Mucilaginibacter paludis DSM 18603] Length = 869 Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust. Identities = 288/831 (34%), Positives = 462/831 (55%), Gaps = 52/831 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M+QY IK+ +P +L+ +R+GDFYE F +DA+ AS LGI LTKR I + G Sbjct: 9 TPLMQQYNTIKAKHPGALLLFRVGDFYETFGEDAIKASGILGIVLTKRANGAATHIELAG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H+ + Y+ KL++ G R+AIC+Q+E P + K++V+R V LVTPG D ++ Sbjct: 69 FPHHSLDTYLPKLVRAGQRVAICDQLEDP-----KTTKTIVKRGVTELVTPGVAYGDNIV 123 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 +NYL ++ + IA +DISTG F + N D + + P E+IF + Sbjct: 124 QQKSNNYLASLYFEKNTIGIALLDISTGEFLTAQGNSDYIDKLLQSFSPSEVIFPKNR-- 181 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISE-SRIADY--------YNITTVDTFGSFSQVE 256 +A +K ET G+ F+ +++ E DY + + ++ FG +E Sbjct: 182 NASFK---ETFGDR-------FYTYALDEWPYTGDYATETLLKHFEVKSLKGFG----IE 227 Query: 257 K-----TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 K AA A+ Y+ +T+ N I R + + L++D + NLE++ + Sbjct: 228 KLNLGIVAAGVALHYLNETEHKNLQHISAIGRIEEEKYLWLDRFSIRNLELIGS-HNDNA 286 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 +L+ +D++ + G R+ I PL + I RL+ + + I + L +++ ++ Sbjct: 287 VTLVDVLDHTCSPMGARMLRRWIVMPLKERKPIEDRLNVVEYLIAHEELKEELKQQIRQI 346 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSL 431 D+ R +S++ + + P+++ ++ + + N++ LR E+L Sbjct: 347 GDLERLISKIGLQKANPREVVQLKKAL-AATNVIKGICSQSESAALRTIGEQLNPCVLIR 405 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 EK + L D P GG + +G + LD R + K + +Q + AE T+I +L Sbjct: 406 EK-IEKELQADPPVMIIKGGVIAEGINEELDRLRKIAFGGKGYLLEIQKREAEITRIPSL 464 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 K+ NN GY++EV+++ KD + +I +QT+ N R+ T EL + E +I A Sbjct: 465 KVAFNNVFGYYLEVSNAH-----KD-KVPTEWIRKQTLVNAERYITPELKEYEEQILGAE 518 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 L +E + L + + + + +Q++A +D+ + A +A + Y +P I+ + Sbjct: 519 EKILALETRLYNELLYELTQYIKPIQLNAQLVAQLDVLLNFATIAIKNYYVKPDINEGSI 578 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 +K GRHP++EK L + +I ND L D +S ++ ++TGPNM GKS LRQ Sbjct: 579 IDIKGGRHPVIEKNLPL--GEEYITNDVYL----DSDSQQIIIITGPNMAGKSALLRQTG 632 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LIV+MAQMGS+VPA A +G+VDK+F+RVG++DNL+SG STFMVEM ETASILN +++S Sbjct: 633 LIVLMAQMGSFVPAKEATVGLVDKIFTRVGASDNLSSGESTFMVEMNETASILNNLSDRS 692 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNAT 789 ++LDEIGRGT+T DG+SIAWA EYLH + + + L ATH+HEL +L+ S R N Sbjct: 693 LILLDEIGRGTSTYDGISIAWAIAEYLHNHPSAKAKTLFATHYHELNELTNSFHRIKNFN 752 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + V + IIFL K++PG ++HS+GI V KLAG+P V+SRA +ILK E Sbjct: 753 VTVKEVGHKIIFLRKLVPGGSEHSFGIHVAKLAGMPPRVLSRANEILKKLE 803 >gi|281424692|ref|ZP_06255605.1| DNA mismatch repair protein MutS [Prevotella oris F0302] gi|281401062|gb|EFB31893.1| DNA mismatch repair protein MutS [Prevotella oris F0302] Length = 886 Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust. Identities = 289/836 (34%), Positives = 465/836 (55%), Gaps = 39/836 (4%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 N K TPMM+Q+ +K+ +P++L+ +R GDFYE + +DA +A+ LGITLT+R + Sbjct: 4 NDKGLTPMMKQFFSMKAKHPEALLLFRCGDFYETYGEDAAIAAGILGITLTRRNNSVENS 63 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKK--RGNKSL------VRRNVVR 132 + M G P H + Y+ KLI+ G R+AIC+Q+E P + ++ +G K L V+R + Sbjct: 64 VEMAGFPHHALDTYLPKLIRAGKRVAICDQLEDPKKKREQIKGKKGLTEMDKMVKRGITE 123 Query: 133 LVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRI 192 LVTPG D +L+ ++N+L AV + I+++DISTG F +D + + Sbjct: 124 LVTPGVAMADTVLNYKENNFLAAVHFGKASCGISFLDISTGEFLTGEGTYDYVEKLLGNF 183 Query: 193 DPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSF 252 P+E++++ +++ F + V VF + + + ++ ++ ++ FG Sbjct: 184 SPKEVLYNRDH--KQDFERFFGSKYCVFEMDEWVFSEQN-ARQKLLKHFGTKSLKGFGVE 240 Query: 253 SQVEKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS--GS 309 A+ AI Y++ TQ I R + + +D +LE++ + GS Sbjct: 241 HLRNGVIASGAILQYLELTQHTQINHITSLSRIEEDKYVRLDRFTIRSLELVAPMQEDGS 300 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 SLL ID ++T GGR+ + PL D IN RLD +++F Q P I + L Sbjct: 301 ---SLLNVIDRTVTAMGGRMLRRWLVFPLKDVAPINERLDIVDYFFQKPEFRQLIDEQLH 357 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIR---DGIRSGINILNLFLKNDLPEELRGAVEKLKK 426 D+ R +S++ +GR P++I ++ D +R I L+ +N E L+ E+L Sbjct: 358 RVGDLERIISKVAVGRVSPREIVQLKNALDAVRP-IKEACLYSEN---EALKRIGEQLN- 412 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 L +S++ + + D P G + DG D LDE R + K + +Q K AEET Sbjct: 413 LCESIKTRIEKEIQLDPPQLITKGDVIADGYDDELDELREMSRNGKDYLLKIQEKEAEET 472 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 I +LK+ NN GY++EV ++ KD + + +I +QT++ R+ T EL + E + Sbjct: 473 GISSLKVGFNNVFGYYLEVRNTF-----KD-KVPEGWIRKQTLAQAERYITPELKEYEEK 526 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 I A L +E F L A+ + + + ++A +D ++ A ++E Y RP I Sbjct: 527 ILGAEEKILALEARLFSELVLAMQDFIPQIQINANLLARVDCLLSFAKTSEENGYIRPQI 586 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 D+S + GRHP++E L + ++ ND L D ++ ++TGPNM GKS Sbjct: 587 DDSEVLDISQGRHPVIETQLPL--GERYVPNDVYL----DTQKQQIMMITGPNMAGKSAL 640 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 LRQ ALIV++AQ+G +VPA A IG+VDK+F+RVG++DNL+ G STFMVEM E ++ILN Sbjct: 641 LRQTALIVLLAQVGCFVPAERAKIGLVDKIFTRVGASDNLSLGESTFMVEMTEASNILNN 700 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHET--NRCRGLLATHFHELTDLSKSLKR 784 +++S V+ DE+GRGT+T DG+SIAWA +EYLHE R R L ATH+HEL ++ K+ R Sbjct: 701 VSSRSLVLFDELGRGTSTYDGISIAWAIVEYLHEQPKARARTLFATHYHELNEMEKNFSR 760 Query: 785 FHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 N + V + + +IFL K++ G ++HS+GI V ++AG+P +++ RA ILK E Sbjct: 761 IKNYNVSVKEVDGKVIFLRKLMKGGSEHSFGIHVAEIAGMPRSIVKRANAILKELE 816 >gi|190573396|ref|YP_001971241.1| DNA mismatch repair protein MutS [Stenotrophomonas maltophilia K279a] gi|190011318|emb|CAQ44931.1| putative DNA mismatch repair protein MutS [Stenotrophomonas maltophilia K279a] Length = 863 Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust. Identities = 297/883 (33%), Positives = 471/883 (53%), Gaps = 42/883 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M+Q+ KS PD L+F+RMGDFYELF+DDA A+R L ITLT+RG G IPM G Sbjct: 10 TPLMKQFFAAKSDYPDLLLFFRMGDFYELFYDDARKAARLLDITLTQRGSSGGAPIPMAG 69 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH Y+ +L+ +G +AICEQI P AK LV R VVR+VTPGT+T++ LL Sbjct: 70 VPVHAYEGYLARLVALGESVAICEQIGDPALAK-----GLVERKVVRIVTPGTVTDEALL 124 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKEL 204 LMA++R + + +AW D++ G F ++ D L +++ R++P E++ ++E Sbjct: 125 DERRDTLLMALSRSKQGYGLAWADLAGGRFLVNEVETDDALEAELARLEPAELLVPDEE- 183 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 + V P FD ++ +++ + + FG + TAAA A+ Sbjct: 184 ---NWPEFLRQRTGVRRRAP-WLFDADSGRRQLLNFFKLHDLSGFGIDDKPRATAAAGAL 239 Query: 265 S-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 Y+++TQ P + E + +++A R +LE+ + G +LL +D ++T Sbjct: 240 LGYVEETQKQRLPHLTSIAMETAGEAIAMNAATRRHLELDTRVDGDTRNTLLGVLDSTVT 299 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 GGRL + PL + R ++ I + I++ + D+ R L+R+ + Sbjct: 300 PMGGRLLRRWLHRPLRLREVLVQRHHAVETLIDRGADAD-IREQFRRLGDLERILTRVAL 358 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKTLSSMLSD 441 P+D + +RDG+ + + D P + L A+ + Q L ++ M Sbjct: 359 RSARPRDFSTLRDGLGLLPAVREVLAPLDSPRLQALHAALGEHDACAQLLASAIAEM--- 415 Query: 442 DLPTFK-RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 P K DGG L DG D LDE R L + + + L+L+ E + I LK+ +N G Sbjct: 416 --PPLKLSDGGVLADGFDEELDELRRLSTHADQFLVDLELRERESSGIPTLKVGYNRVHG 473 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IE++ + + + RQT++N R+ T EL E+++ +A + +L E Sbjct: 474 YYIEISKGQSD------RAPVHYTRRQTLTNAERYITEELKAFEDKVLSARDRSLSREKY 527 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 +E L + + +Q E L + ++ +D+ A A A+ ++ RP + ++ GRHP Sbjct: 528 LYEQLLDTLGDQLEPLKQCAAALSELDVLAAFAERAQALDWARPELQAEPCLKIERGRHP 587 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE +Q PF ND DL P+ + + ++TGPNMGGKST++RQNALIV++A +G Sbjct: 588 VVEAVREQ----PFEPNDLDLH-PDRR----MLVITGPNMGGKSTYMRQNALIVLLAHIG 638 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPAS A IG +D++ +R+G+ D+LA G+STFMVEM ET+ IL+ AT S V++DEIGR Sbjct: 639 SFVPASRAVIGPIDRILTRIGAGDDLARGQSTFMVEMAETSYILHHATAHSLVLMDEIGR 698 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR-----FHNATLQVSDS 795 GT+T DGL++A A +L NRC L ATH+ ELT L+ N L + Sbjct: 699 GTSTYDGLALADAVARHLAYQNRCYTLFATHYFELTALADEQHEGGRSGIANVHLDAVEH 758 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 E ++F+H V G A+ S+G+QV LAGLP +++A L E+ + L Sbjct: 759 GEALVFMHAVKDGPANRSFGLQVAALAGLPRATVAQARRRLAELEQRGAESHA-AELAPQ 817 Query: 856 EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + + E + ++ DE++P AL+ LY +K Sbjct: 818 ALDAPQQFGLFAAPSSKAQEALAAIDPDELTPKQALEALYRLK 860 >gi|226939306|ref|YP_002794377.1| DNA mismatch repair protein MutS [Laribacter hongkongensis HLHK9] gi|226714230|gb|ACO73368.1| MutS [Laribacter hongkongensis HLHK9] Length = 851 Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust. Identities = 304/888 (34%), Positives = 460/888 (51%), Gaps = 63/888 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ +K+ +PD+L+FYRMGDFYE+F+ DA A+R L ITLT RG+ G+ IPM G Sbjct: 9 TPMMQQYLALKADHPDTLLFYRMGDFYEMFYGDAEKAARLLDITLTARGQSAGQPIPMAG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H Y+ +L+K+G +AICEQI P A +G VVR+VTPGTLT+ LL Sbjct: 69 VPFHAVEQYLARLVKLGESVAICEQIGDP--ATSKGPVER---RVVRVVTPGTLTDAALL 123 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 N L+A+A + +A + +++G F++ + +RL +++ R+ P E++ ++ + Sbjct: 124 DDKQENRLVALAFHKGRLGLASLSLASGDFRVLETEAERLGTELERLKPAELLVADDGFA 183 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAAAAAI 264 + + G P FD + + R+A ++ + + FG+ V AA A + Sbjct: 184 PRQ----LQQTGVPVRRLPPWHFDVTSARERLARHFGVQDLAGFGAADLSVATGAAGALL 239 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 Y + TQ + E+ L +D+ R NLE+ T+ G +LL +D +T Sbjct: 240 EYARSTQSGELAHVVGLSVEEASQYLDLDATTRRNLELTETIRGEAAPTLLSLLDRCVTS 299 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 G RL E + PL D+ + R ++I + I L DV R SR+ + Sbjct: 300 MGSRLLREWLHHPLRDTAAVRARQEAIATL---QVCHADIHLALDPVADVERITSRVALR 356 Query: 385 RGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLP 444 P+D+A +R + LP+ L L L TL + L D P Sbjct: 357 SARPRDLAALRASL------------AQLPQ----VKAVLAGLGNPLLATLDAALPQDSP 400 Query: 445 --------------TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 RDGG G A LDE R+++ +A L+ + E T I Sbjct: 401 LAALLQQAIAAEPAAMVRDGGVFAAGYHAELDELRAIQTDCSVFLADLEARERERTGIST 460 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+++N G++IEV + + D + RQT+ N R+ T EL E++ +A Sbjct: 461 LKVEYNKVHGFYIEVGRVHSEKVPDD------YRRRQTLKNAERYITPELKTFEDKALSA 514 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 AL +E +E L + + +L ++ +A +D+ LA A ++ P++ S Sbjct: 515 RERALALEKALWETLLDTLAPHVPALQKLARALASLDVLATLAERAATLDFVCPVLTRSA 574 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 ++ GRHP+VE +++ F+AND L+ P+ K L L+TGPNMGGKST++RQ Sbjct: 575 EIRIQSGRHPVVEAQVER-----FVANDTQLA-PDRK----LLLVTGPNMGGKSTYMRQV 624 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 A IV++A +GS+VPAS A IG V+++F+R+G++D+LA GRSTFMVEM ETA+IL+ + Sbjct: 625 AQIVLLAYIGSFVPASQAQIGRVERIFTRIGASDDLAGGRSTFMVEMTETANILHNSNEW 684 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V++DE+GRGT+T DGL++AWA L E NR L ATH+ ELT L+ N L Sbjct: 685 SLVLMDEVGRGTSTFDGLALAWAIARRLIEKNRAYTLFATHYFELTRLAADYPMVANVHL 744 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM 850 + + I+FLH V G A SYG+QV LAG+P VI A L E Q Sbjct: 745 SAVEHKDRIVFLHHVDDGPASQSYGLQVAALAGVPAPVIRDARRKLAELETQAATGQGPD 804 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 P E N++ VE L+ + +SP AL L+ +K Sbjct: 805 LFMMP----AEPVPNVASTPHPLVEAFAELDPEMLSPREALDWLFRMK 848 >gi|159030187|emb|CAO91079.1| mutS [Microcystis aeruginosa PCC 7806] Length = 882 Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust. Identities = 308/841 (36%), Positives = 458/841 (54%), Gaps = 50/841 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TPM + Y+E+K P++L+ YR+GDF+E FF DA++ SR L + LT + GK +G+ + M Sbjct: 31 TPMYQHYVEVKETYPNALLLYRVGDFFECFFQDAVIISRELELVLTSKEGGKGIGR-VAM 89 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H Y + L++ G+ +AIC+Q+E EA K LV R + +L+TPGTLT++ Sbjct: 90 TGVPHHALERYSRLLVEKGYAVAICDQVEDSTEAA--AEKRLVERAITKLLTPGTLTDEG 147 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLIS-DIMRIDPREIIF--- 199 +L+ +N+L AV W +A+ DISTG F + ++ +S ++ R+ P EI+F Sbjct: 148 MLNAKKNNFLAAVVITGENWGLAYADISTGEFYTTQASDLTALSLELTRLQPSEILFPIN 207 Query: 200 ----------SEK--ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVD 247 EK L S +L +P F + +++R+ Y + +++ Sbjct: 208 APDLNRILRPGEKSDHLPPCLPDSFCYSL------RPQTIFTLTEAKNRLLITYKMRSLE 261 Query: 248 TFGS-FSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL 306 G + AA + YI+ TQ N+ + + I L +D R NLEI +T+ Sbjct: 262 GMGCEHLPLAIRAAGGLLEYIEDTQKANQVPLQPLKTYSISEFLILDGQTRRNLEITQTV 321 Query: 307 -SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQ 365 GS SLL ID + T G R + PL DS I R D+I NP L I+ Sbjct: 322 RDGSFYGSLLWAIDRTCTAMGSRALRRWLLQPLLDSRGIRARQDTIQELKDNPALRQDIR 381 Query: 366 KILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLK 425 + L+ D+ R R+ G +D+ + + ++ L + P ++ L+ Sbjct: 382 QKLREIYDIERLSGRVGAGTANARDLLSLAASLVKLADLAALVASGNSP-----YLKALQ 436 Query: 426 KLPQSLEK---TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRI--IASLQL 480 ++P LEK + + L + P ++GG +R+G DA LD R RD + I +L+ Sbjct: 437 QIPADLEKLGQQVIAHLVESPPLHLKEGGVIREGIDAQLDALR--RDYQEVIDWFKNLET 494 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 E T I NLK+ +N GY+I + S A K+ ++ +QT+ N R+ T EL Sbjct: 495 TEKERTGISNLKVNYNKTFGYYISLPRSKADFAPKE------YVRKQTLVNEERYITTEL 548 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 + EN I A + +E E F L + E S + + +A +D+ ALA +A Q Sbjct: 549 KEKENIILTAVDELNNLEYEIFSDLRRQVAEFSPEIREVATKVAALDVLAALAEIAVYQG 608 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 YCRP I + +KDGRHP+VE++L + F+ N +L L +LTGPN Sbjct: 609 YCRPEIADGRLIDIKDGRHPVVEQSL---GAGFFVPNSINLGNQEGLEYPDLIILTGPNA 665 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GKS +LRQ LI ++AQ GS+VPA A I I D++F+RVG+ D+LA+G+STFMVEM ET Sbjct: 666 SGKSCYLRQVGLIQLLAQTGSFVPAKSAKISICDRIFTRVGAVDDLATGQSTFMVEMNET 725 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 A+ILN AT++S V+LDEIGRGTAT DGLSIAWA EYL + R + ATH+HEL +L+ Sbjct: 726 ANILNHATDRSLVLLDEIGRGTATFDGLSIAWAVAEYLATVLQSRTIFATHYHELNELAS 785 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 L+ N + V + I+FLH+V PG AD SYGI+ G+LAGLP +VI RA ++ E Sbjct: 786 ILENVANYQVTVKELPHEIVFLHQVRPGGADKSYGIEAGRLAGLPASVIDRAMQVMGQIE 845 Query: 841 K 841 K Sbjct: 846 K 846 >gi|299822955|ref|ZP_07054841.1| DNA mismatch repair protein MutS [Listeria grayi DSM 20601] gi|299816484|gb|EFI83722.1| DNA mismatch repair protein MutS [Listeria grayi DSM 20601] Length = 856 Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust. Identities = 304/893 (34%), Positives = 493/893 (55%), Gaps = 65/893 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY+ IK+ D+ +F+R+GDFYE+FFDDAL AS+ L ITLT R + IPMCG Sbjct: 5 TPMMRQYLTIKANYQDAFLFFRLGDFYEMFFDDALKASQILEITLTGREGGGTEKIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A+ YI+ LI G+++AICEQ+E P + K +V+R VV+L++PGT+ +++ L Sbjct: 65 VPYHSASGYIETLIDKGYKVAICEQVEDP-----KTTKGMVKREVVQLISPGTVMDEKGL 119 Query: 146 SPTDSNYLMAV-ARIRTEWAIAWIDISTGIFKIST--SNHDRLISDIMRIDPREIIF--- 199 ++NY+ A+ + + A+ D+STG K +T + ++L++++ + +E+I Sbjct: 120 KEKENNYISALYSDGDARFGFAYCDLSTGELKATTLQAETNKLLNELTTLSAKELIVDSA 179 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRI--ADYYNITTVDTFGSFSQVEK 257 ++ LS+ +L E LG S+ ES ADY ++ VD G + VE+ Sbjct: 180 NQALLSN----NLKEELG----------LTISLEESTALQADYQHL--VD--GEWGGVEQ 221 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLK 316 A A I+Y+ ++Q + + + + +D ++ NLE+ + G +Q +LL Sbjct: 222 KAVAKLITYLAESQKRDLGHLQQAVHYETSHFMKMDYYSKRNLELSESNRGKGKQGTLLW 281 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D++ T GGRL + I PL D I R D + FI+ + + LK+ D+ R Sbjct: 282 LLDHTKTAMGGRLLKQWIDRPLIDKEIITQRQDDVAAFIRAFFERMDLVEHLKNVYDLER 341 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 R+ G +D+ +R+ + I + L + + L+ +KL + L L Sbjct: 342 LAGRVAYGNVNARDLIQLRNSLYQ-IPKIKAILASIESDSLQTIADKLDPC-EELMTILE 399 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + D P R+GG ++DG + LD R K IA L+ K E T IK+LK+ N Sbjct: 400 QAIIDSPPISIREGGIIKDGYNEQLDTYRDASRNGKSWIAELESKEREITGIKSLKVGFN 459 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+IEVT ++ L + R+ +QT++N R+ T EL + E I A ++ Sbjct: 460 RVFGYYIEVTRANTHHL-----PEGRYERKQTLTNAERYITPELKEKEKLILEAEEKSVE 514 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E + F + + L +++++ ID + A ++++ ++ RP++ + VK Sbjct: 515 LEYQLFIEVREQVKSFIHRLQALAKLVSEIDCLQSFAEVSEKNHFIRPVLSETGKLSVKQ 574 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE+ + QS ++ANDC + +D+ ++ L+TGPNM GKST++RQ AL I Sbjct: 575 GRHPVVERVMGAQS---YVANDCQMD--DDR---EILLITGPNMSGKSTYMRQVALTAIC 626 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+G +VPA A + + D++F+R+G+AD+L +G+STFMVEM+E + + AT S ++ D Sbjct: 627 AQIGCFVPAEEATLPVFDQIFTRIGAADDLIAGQSTFMVEMLEARNAIVNATKDSLILFD 686 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGTAT DG+++A A IEY+HE + + L +TH+HELT L + L N + + N Sbjct: 687 EIGRGTATYDGMALAQAIIEYIHENVKAKTLFSTHYHELTVLDQELASLANIHVSAVEEN 746 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 ++FLHK+ G AD SYGI V +LA LP +I RA IL E P+ Sbjct: 747 GKVVFLHKIKEGPADKSYGIHVAQLAELPADLIKRASQILAELEAEKEQTT-------PQ 799 Query: 857 IQTKESKNNLS-----------KNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ E L+ K D+ ++I LNL +M+P+ A+ LY ++ Sbjct: 800 VEKTEEDIQLAMFQVEDIPAPKKADRDLRKEIAQLNLMQMTPMEAMNVLYKLQ 852 >gi|52842032|ref|YP_095831.1| DNA mismatch repair protein MutS [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629143|gb|AAU27884.1| DNA mismatch repair protein MutS [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 865 Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust. Identities = 292/828 (35%), Positives = 466/828 (56%), Gaps = 49/828 (5%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S TPMM+QY+ IK+ PD L+FYRMGDFYELFFDDA AS+ L +TLT RG+ K IPM Sbjct: 23 SHTPMMQQYLRIKTDYPDMLLFYRMGDFYELFFDDAKRASQLLDLTLTHRGQSADKPIPM 82 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H +Y+ +L+K G +AICEQI P +K V R V R++TPGT+T++ Sbjct: 83 AGVPYHAVENYLARLLKKGESVAICEQIGDP-----ATSKGPVERQVTRIITPGTVTDEA 137 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSE 201 LL N L+A+ + + IAW+D+ G F + T H +L ++++R+ P E++ E Sbjct: 138 LLDARKDNILLAIHTQKQKIGIAWVDLGGGRFHLQELTEEH-QLNAELVRLQPAELLCKE 196 Query: 202 KELSHAEYKSLFETLGNVAVA-QPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTA 259 L N AV +P FD S + + + +++T + FG + A Sbjct: 197 S-------TPLPSFCSNFAVKFRPGWEFDASNAHKLLCEQFSVTDLSAFGEQNYPTALIA 249 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A A ++Y+K TQ + P + E + L +D++ + +LE+ + G E LL +D Sbjct: 250 AGALLAYLKTTQKQSLPHLTTLTLEQSEDYLQLDASTQKHLELFENIHGGGEHCLLSILD 309 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSIN--FFIQNPILINPIQKILKSSPDVPRS 377 + G RL + PL I TR +I F+Q + + +++K DV R Sbjct: 310 KTACAMGSRLLKRWLGKPLKQHAIIQTRQQAIKEIIFLQQDV---SLHQLIKQCADVERI 366 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKK---LPQSLE 432 +SR+ + P+D+ S + L L + ++L E + ++KK L+ Sbjct: 367 VSRIALKSARPRDLV-------SLLQTLTLLPAIHDELQENKSLLINEIKKEISPLPLLQ 419 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 + L + + D+ P RDGG + G D LDE R+L + + L+ + T + LK Sbjct: 420 QLLETAIIDNPPMLIRDGGVIAPGFDEELDELRNLSSNAHETLVKLEQEEKNRTGLSTLK 479 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 + +N+ G++IE++ + A + F +QT+ N+ R+ T EL E+++ +A + Sbjct: 480 LGYNSVQGFYIELSKAQAQ------NAPPHFHRKQTLKNVERYITPELKLFEDKVLSAQS 533 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 AL E ++ L I + L + ++ +A +D+ + LA A+ N+ P + + Sbjct: 534 KALAREKWLYDNLLEEIQQYIPELSDLAKSLAQLDVLVTLAERAQSLNWNCPNLVPESGI 593 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 +++ GRHP++E L+++ FIAND +L PN + L+TGPNMGGKST++RQ AL Sbjct: 594 MIQAGRHPVIEPLLQER----FIANDLELK-PNQN----MLLITGPNMGGKSTYMRQTAL 644 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 IV++A +GS+VPA +G +D++F+R+G++D+L+SGRSTFMVEM ETA IL QAT+QS Sbjct: 645 IVLLAHIGSFVPADKVTLGPLDRIFTRIGASDDLSSGRSTFMVEMTETAQILRQATSQSL 704 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 V++DEIGRGT+T DG+++A+A+ +L T + L +TH+ ELT+L K N LQ Sbjct: 705 VLIDEIGRGTSTYDGMALAYASCAFLASTIKAYTLFSTHYLELTELPKEFSCIRNVHLQA 764 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 S I+FL++V G A+ SYG++V +LAG+P V+ A++ L + Sbjct: 765 SIKTGQIVFLYRVEEGCANRSYGLEVAELAGIPKEVLKLAHEHLNQIQ 812 >gi|149183368|ref|ZP_01861804.1| DNA mismatch repair protein [Bacillus sp. SG-1] gi|148848911|gb|EDL63125.1| DNA mismatch repair protein [Bacillus sp. SG-1] Length = 874 Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust. Identities = 289/904 (31%), Positives = 496/904 (54%), Gaps = 62/904 (6%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPM+ QY+++K+ D+ +F+R+GDFYE+FF+DA+ AS+ L ITLT R + I Sbjct: 1 MATYTPMIMQYLKVKAEYQDAFLFFRLGDFYEMFFEDAIKASQELEITLTSREGGGTERI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCG+P H+A +YI++LI+ G+++AICEQ E P +AK +V+R VV+L+TPGT+ + Sbjct: 61 PMCGIPYHSAPNYIEQLIEKGYKVAICEQTEDPKQAK-----GVVKREVVQLITPGTVMD 115 Query: 142 DQLLSPTDSNYLMAVARIR-TEWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREII 198 + L ++NY+ +++ A+A+ D+STG K++ +++ D ++++ I +E++ Sbjct: 116 GKGLQDKENNYIASISLFDDNTAALAYSDLSTGETKVTQLSASFDETVNELATIGAKEVV 175 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 H+E+ E L V + V +E+ + Y + D ++ KT Sbjct: 176 V------HSEFD---EELKRKLVDRTGVTISFE-NETDTNENYRLLLDDL--KQDKLTKT 223 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKT 317 ++Y+ +TQ + + E I + ID ++ NLE+ T+ + ++ SLL Sbjct: 224 VCRL-LNYLFRTQKRSLDHLQKVETYQIHQFMKIDYYSKRNLELTETIRAKGKKGSLLWL 282 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D ++T G R+ I PL D +I R + + I+ +LK D+ R Sbjct: 283 LDETMTAMGARMLKRWIDRPLIDQKEIEKRHSMVQLLQERFFEREDIRDLLKEVYDLERL 342 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTL 435 R+ G +D+ +R + + N+ L +D+ +E+ +++ +L L +L Sbjct: 343 AGRVAFGNVNARDLIQLRKSLGQIPLLKNIIGELGHDIADEILKSIDPCDELTGMLHDSL 402 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 D P ++G ++DG LD+ R K IA L+ + E T I++LK+ + Sbjct: 403 H----DQPPLSIKEGNIIKDGYHEELDQYRDASRNGKTWIAQLEREERERTGIRSLKVGY 458 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+IEVT ++ +L++ R+ +QT++N RF T EL + E I A ++ Sbjct: 459 NRVFGYYIEVTKANLGLLEEG-----RYERKQTLTNAERFITPELKEKEALILQADEKSI 513 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E + F + + E L ++V++ ID+ A ++++++Y +P + ++ Sbjct: 514 ELEYDLFLNIRETVKEYIPRLQKLARVVSEIDVLQCFATVSEKRHYVKPSFNRDRKIMIT 573 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 DGRHP+VEK + Q ++ NDC + ++ L+TGPNM GKST++RQ AL I Sbjct: 574 DGRHPVVEKVMDAQE---YVPNDCYMD-----QEREILLVTGPNMSGKSTYMRQLALTAI 625 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +AQ+G YVPA A + I D++F+R+G+AD+L SG+STFMVEM+E + + AT S ++ Sbjct: 626 LAQIGCYVPAKEASLPIFDQVFTRIGAADDLISGQSTFMVEMLEAKNAITNATQDSLILF 685 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DG+++A A IEY+HE + + L +TH+HELT L + L N + + Sbjct: 686 DEIGRGTSTYDGMALAQAIIEYIHENIKAKTLFSTHYHELTVLEQELANVKNIHVSAMEH 745 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL------------------- 836 N ++FLHK+ G AD SYGI V +LA LP +I RA +IL Sbjct: 746 NGNLVFLHKIKEGAADKSYGIHVAQLAELPENLIVRANEILEKLEQKTDNNPGRNASYQQ 805 Query: 837 --KTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 K EK + + + + ++S +LSK ++ +E++K ++ EM+PL A+ L Sbjct: 806 TSKVAEKTQEEQPAQLSFFQEDKKVQQSGGDLSKKERKLIEELKSFDILEMNPLQAMNAL 865 Query: 895 YAVK 898 Y ++ Sbjct: 866 YELQ 869 >gi|315653064|ref|ZP_07905992.1| DNA mismatch repair protein HexA [Lactobacillus iners ATCC 55195] gi|315489599|gb|EFU79233.1| DNA mismatch repair protein HexA [Lactobacillus iners ATCC 55195] Length = 854 Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust. Identities = 285/872 (32%), Positives = 477/872 (54%), Gaps = 41/872 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY +IK PD+ +FYR+GDFYELF DDA+ ++ L +TLT R K IPM G Sbjct: 6 TPMMEQYYKIKQQYPDAFLFYRVGDFYELFEDDAVKGAKLLELTLTHRSNKSAKPIPMAG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP + YI L+ G+++AICEQ+E P +A+ +V+R +++LVTPGT+ D Sbjct: 66 VPHLAVDSYINTLVDKGYKVAICEQLEDPKKAQ-----GMVKRGIIQLVTPGTVINDNPD 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 +SNYL ++ W + + D+STG + ++ + ++++++ + RE+++ E Sbjct: 121 QAKESNYLTSLCSNSQGWGLTYCDLSTGESYATHLTSWEMIVNELLSLQTRELVYGETLT 180 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S K +F + ++QP +++ + + T +Q+E A + Sbjct: 181 SD---KQIFLKKAGITLSQP----------VKLSKEHAEVSYVTQQLHNQLEIAATKQLL 227 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSIT 323 +Y+ TQ + + + + L + ++NLE++++ +G + SL +D + T Sbjct: 228 AYLLATQKRSLAHLQVTQSYEPNQYLQMSHIVQTNLELIKSAKTGKKMGSLFWLLDKTST 287 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 GGRL I PL ++I +R + + I K L+ D+ R R+ + Sbjct: 288 AMGGRLLKSWIERPLISLSEIKSRQLVVTALFDDYFSREKIIKQLQGVYDLERLTGRVAL 347 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFL--KNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 G +++ + D + I+N+ KN++ ++ LK + + KT+ + Sbjct: 348 GSANARELLQLADSLAVVPEIINILANSKNEVLNNFAQKIDPLKGIHDLIVKTIV----E 403 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + P ++GG ++ G + LD R K+ +A + E+T I NL++ +N GY Sbjct: 404 NPPLSTKEGGIIKSGVSSQLDRYRDAMMNGKKWLADMANSEREKTGINNLRVGYNKVFGY 463 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IEVT+S KD DR++ +QT++N R+ T+EL + E I A + + +E E Sbjct: 464 YIEVTNSY-----KDKVPLDRYMRKQTLTNAERYITVELKEHEALILEAQDYSTDLEYEL 518 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY-CRPIIDNSTNFIVKDGRHP 620 F L I + +L ++ ++ +D+ ++L+++ NY C +S+ + +GRHP Sbjct: 519 FTNLREDIKKYIPALQKLAKQLSSLDVLSTFSLLSEQNNYVCPQFSQDSSAINIVNGRHP 578 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + S + +I ND + ++L+TGPNM GKST++RQ ALI+IMAQ+G Sbjct: 579 VVEKVM---SDEEYIPNDVKMD-----EQTNIFLITGPNMSGKSTYMRQLALIIIMAQIG 630 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 ++PA A + I DK+F+R+G+ D+L SG+STFMVEM E LN AT +S ++ DEIGR Sbjct: 631 CFIPADSAVLPIFDKIFTRIGAGDDLISGKSTFMVEMSEANIALNNATKRSLILFDEIGR 690 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A I+YLH+ + L ATH+HELTDL + L N + + N +I Sbjct: 691 GTATYDGMALAGAIIKYLHDKVGAKTLFATHYHELTDLDQELAHLKNIHVGATQENGHLI 750 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 FLHK++PG AD SYGI V +LAGLP V+ A +LK EK + NQ ++ Sbjct: 751 FLHKILPGAADQSYGIHVAQLAGLPTKVLREATHMLKQLEK-HSDNQAAFSDEQLDLFGS 809 Query: 861 ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALK 892 ++ +S ++ + +IK L L+EM+PL ++ Sbjct: 810 SDQHKMSDEEQDVLTQIKNLYLNEMTPLQVMQ 841 >gi|313884208|ref|ZP_07817974.1| DNA mismatch repair protein MutS [Eremococcus coleocola ACS-139-V-Col8] gi|312620655|gb|EFR32078.1| DNA mismatch repair protein MutS [Eremococcus coleocola ACS-139-V-Col8] Length = 866 Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust. Identities = 299/885 (33%), Positives = 486/885 (54%), Gaps = 53/885 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY +K PD +F+R+GDFYE+F +DAL AS+ L ITLT R K++ IPMCG Sbjct: 7 TPMMEQYDAVKERYPDCFIFFRLGDFYEMFNEDALQASKILEITLTSRNKNVDNPIPMCG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A+ YI+ L++ GH++AICEQ+E P + K +V+R V++++TPGT+ +++ L Sbjct: 67 VPYHSADDYIKTLVQAGHKVAICEQLEDP-----KLTKGMVKRGVIKVITPGTIMQEKAL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEK-- 202 + ++NY+ + I + +++ D+STG +F ++LI+++ I E+++ + Sbjct: 122 NQKENNYIACLKEIGEFFYLSYCDVSTGEVFLTQGQEMNQLINELEGIQVSELVYPDSIN 181 Query: 203 ----ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 E A K+ F + + A A P++ +S+S +D Q E Sbjct: 182 PSLLEFLKANLKTHFSVIDDQAQASPSLM--TKLSKSLTSD--------------QAEAG 225 Query: 259 AAAA--AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLL 315 A ++Y++ QM + I L + +S LE+ R+L R++ SLL Sbjct: 226 LACLNLLLAYVESVQMQDLDHFQAVNFYQIIDYLQMTPYTKSQLELSRSLRSQRKKGSLL 285 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T GGRL + + PL + R D + I+N ++ L D+ Sbjct: 286 WYLDRTKTAMGGRLLHQWLDKPLQVKEPLLQRHDKVQSLIENYFHRLDLESALDKIYDLE 345 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R ++++ +G +D+ ++ ++ I LN + L + + + L +L K L Sbjct: 346 RLVTKISLGHANARDMIQLKQSLQQ-IPYLNKVIAA-LRADGQDSFNPLASF-DTLVKLL 402 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 L D P +G +RDG LD+ R + ++ + LQ + E+T +K LK+ + Sbjct: 403 EESLEPDPPLSVTEGNIIRDGYHQQLDKYRDALNHGQQWLVELQQREREKTGLKTLKVGY 462 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+IE++ A+ L+ R+ +QT++N RF T EL D+E I A + A Sbjct: 463 NKVFGYYIEISRLQAAQLEDP-----RYQRKQTLANNERFITEELKDIETTILEAQDKAK 517 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP-IIDNSTNFIV 614 L+E E F + + +L + ++ +A +DI A A LA+E+N+CRP IID + Sbjct: 518 LLEYELFVAIRQDLSRHIPTLQSLAKQVAELDILCAFASLAEEENFCRPQIIDQPGQLEL 577 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 ++ RHP++E+ + F+AN+ +S DK L LLTGPNM GKSTF+RQ A V Sbjct: 578 EESRHPVIEQMI---GPANFVANNLKVS--PDK---YLLLLTGPNMSGKSTFMRQVAYAV 629 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 I+ Q+GS+VPA A + IVDK+F+R+GSAD+++ G+STFMVEM+ET L +A+++S ++ Sbjct: 630 ILNQIGSFVPAKLAKLPIVDKIFTRIGSADDISRGQSTFMVEMMETNEALQEASSRSLLL 689 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 DEIGRGTAT DG+++A IEY+ + R + +TH+HELT+L+ N + S+ Sbjct: 690 FDEIGRGTATYDGMALAQGIIEYIADKVRALTIFSTHYHELTNLATESSNIRNIHVGASE 749 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE----KLYHHNQKDM 850 N +IFLHK+ G AD SYGI V +LAGLP ++I + IL E K+ + + + Sbjct: 750 KNGELIFLHKIFDGPADKSYGIHVARLAGLPESLIQNSQAILFRLEAKAKKMDQNEDQQL 809 Query: 851 RLYYPEIQTKESKNNLSKND-KLFVEKIKCLNLDEMSPLTALKTL 894 L+ E + KN +E + NL++M+PL + L Sbjct: 810 SLFDQESLDSNGFDVKQKNPVSPLLEDLAKANLNQMTPLDTMVYL 854 >gi|281422309|ref|ZP_06253308.1| DNA mismatch repair protein MutS [Prevotella copri DSM 18205] gi|281403630|gb|EFB34310.1| DNA mismatch repair protein MutS [Prevotella copri DSM 18205] Length = 887 Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust. Identities = 289/840 (34%), Positives = 470/840 (55%), Gaps = 50/840 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKD 80 K TPMMRQ+ E+KS +P++L+ +R GDFYE + +DA+ ASR LGITLT+R G G Sbjct: 6 KGLTPMMRQFFEMKSKHPEALLLFRCGDFYETYCEDAVEASRILGITLTRRNNGGSTGT- 64 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR----GNKSL------VRRNV 130 M G P H + Y+ KLI+ G R+A+C+Q+E P KKR G K L V+R + Sbjct: 65 TEMAGFPHHALDTYLPKLIRAGKRVAVCDQLEDP--KKKRLEIKGKKGLSQMDKMVKRGI 122 Query: 131 VRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD---RLIS 187 LVTPG D +L+ ++N+L AV +T ++++DISTG F +D +L+ Sbjct: 123 TELVTPGVAMGDNVLNYKENNFLAAVHFGKTACGVSFLDISTGEFLTGEGTYDYVEKLMG 182 Query: 188 DIMRIDPREIIFSEKELSHAE--YKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITT 245 + M P+E+++ + E + S + T + F + ++ ++ + Sbjct: 183 NFM---PKEVLYDRARKNDFEKYFGSKYCTF-----ELDDWVFTEQTALQKLLGHFKTKS 234 Query: 246 VDTFGSFSQVEKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILR 304 + FG A+ AI Y++ TQ I R + + +D +LE++ Sbjct: 235 LKGFGVEHLKNGVIASGAIMQYLEITQHTQINHITALSRIEEDKFVRMDRFTIRSLELVA 294 Query: 305 TLS--GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILIN 362 + GS SLL ID ++T GGR+ + PL D IN RLD + +F + P Sbjct: 295 PMQEDGS---SLLNVIDRTVTAMGGRMLRRWLVFPLKDVKPINERLDIVEYFFKEPEFRQ 351 Query: 363 PIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVE 422 + L D+ R +S++ +GR P+++ +++ + + I + + ++ E L+ E Sbjct: 352 LLDDQLHRISDLERIISKVAVGRVSPREVVQLKNALEA-IKPIKVACQHATNEALKRVGE 410 Query: 423 KLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 +L + ++L+ ++ + D P G + DG +A LD+ R++ K + +Q + Sbjct: 411 QLN-VCETLKDRIAREIQPDPPQLVNKGDVIADGFNAELDDLRAISRHGKDYLLKIQERE 469 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E+T I +LK+ +NN GY++EV ++ KD + + +I +QT++ R+ T EL + Sbjct: 470 IEKTGISSLKVGYNNVFGYYLEVRNTF-----KD-KVPEEWIRKQTLAQAERYITQELKE 523 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E +I A L++E + F L A+ E + + +IA +D ++ A + E Y Sbjct: 524 YEEKILGADEKILVLEAQLFNELIAAMQEYIPQIQINANLIARMDCLLSFAKTSDENRYV 583 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 RPI+D+S +K GRHP++E L + ++ ND L D ++ ++TGPNM G Sbjct: 584 RPIVDDSEVLDIKQGRHPVIETQLP--LGERYVPNDVLL----DTEKQQIMMITGPNMAG 637 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KS LRQ ALIV++AQ+G +VPA A +G+VDK+F+RVG++DN++ G STFMVEM E A+ Sbjct: 638 KSALLRQTALIVLLAQVGCFVPAESARVGLVDKIFTRVGASDNISLGESTFMVEMTEAAN 697 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSK 780 ILN + +S V+ DE+GRGT+T DG+SIAWA +EYLHE + R L ATH+HEL ++ K Sbjct: 698 ILNNVSPRSLVLFDELGRGTSTYDGISIAWAIVEYLHEHKKAQARTLFATHYHELNEMEK 757 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + R N + V + + +IFL K+ PG ++HS+GI V ++AG+P ++++RA ILK E Sbjct: 758 NFPRIKNFNVSVREVDGKVIFLRKLEPGGSEHSFGIHVAEIAGMPRSIVNRANVILKQLE 817 >gi|305665199|ref|YP_003861486.1| DNA mismatch repair protein [Maribacter sp. HTCC2170] gi|88709951|gb|EAR02183.1| DNA mismatch repair protein [Maribacter sp. HTCC2170] Length = 860 Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust. Identities = 299/878 (34%), Positives = 479/878 (54%), Gaps = 37/878 (4%) Query: 29 MRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPV 88 M+QY IK+ PD+L+ +R+GDFYE F DA+ AS+ LGI LT R G + G P Sbjct: 1 MQQYNTIKTKYPDALLLFRVGDFYETFGKDAVKASKILGIILTHRNNG-GDRTELAGFPH 59 Query: 89 HTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPT 148 H+ N Y+ KL+K G R+AIC+Q+E P + KS+V+R V LVTPG D +L+ Sbjct: 60 HSLNTYLPKLVKAGQRVAICDQLEDP-----KLTKSIVKRGVTELVTPGVALNDDILNAK 114 Query: 149 DSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHAE 208 +N+L AV R ++++DISTG F + N +++ + + P EI+ S+ A Sbjct: 115 TNNFLCAVHFGRKLLGVSFLDISTGEFLTAEGNEEQIAKLLQNLGPNEILVSK-----AH 169 Query: 209 YKSLFETLGNV--AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK--TAAAAAI 264 K + G + F + + +++ +T+ FG Q+ + A+ + Sbjct: 170 KKDFLDIFGQQFHTFFTEDWLFQEDYALETLTNHFKTSTLKGFG-VDQITQGIIASGVVL 228 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 Y+ +TQ I +R + +++D NLE+ + + +LL ID +I+ Sbjct: 229 HYLSETQHRQLQHINTIKRIAEEEYIWMDRFTIKNLELYNS-TNVNAVTLLDVIDKTISP 287 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 GGR+ +A PL + KI R I++ ++ +Q +K D+ R +S++ G Sbjct: 288 MGGRMLKRWLALPLKNIEKIRRRHQVISYLTSEETVLQKLQNNIKKMGDLERLISKVATG 347 Query: 385 RGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLP 444 + PK++ +++ + + I + L ++ E + L + M++++ P Sbjct: 348 KINPKEVVQLKNSLEAVIPVKQLATNSE--NEAMNLIGDQIHTCDLLRAKIKDMINEEAP 405 Query: 445 TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIE 504 G + LDE R L K + + + E T I +LKI NN GY+IE Sbjct: 406 INILKGNAIAQSYSEELDELRGLAYSGKEYLDKMLKRETERTGITSLKIASNNVFGYYIE 465 Query: 505 VTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEI 564 V ++ KD + + +I +QT+ N R+ T EL + E +I A L +E + F Sbjct: 466 VRNAH-----KD-KVPEEWIRKQTLVNAERYITEELKEYEAKILGAEERILQLEQQLFAQ 519 Query: 565 LSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEK 624 L + E + N +Q IA +D LAKE +Y +P +++ST+ + +GRHP++EK Sbjct: 520 LVVWMQEYIVPVQNNAQQIATLDCLCGFTQLAKENDYNKPQLNDSTSLEIIEGRHPVIEK 579 Query: 625 TLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684 L + +IAND L+ N + L ++TGPNM GKS LRQ ALIV++AQMGS+VP Sbjct: 580 QLP--LGEAYIANDLILNRENQQ----LIMITGPNMSGKSAILRQTALIVLLAQMGSFVP 633 Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744 A A IG VDK+F+RVG++DN++ G STFMVEM ETASILN + +S ++LDEIGRGT+T Sbjct: 634 ARSAKIGYVDKIFTRVGASDNISMGESTFMVEMNETASILNNLSERSLILLDEIGRGTST 693 Query: 745 LDGLSIAWATIEYLHE-TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 DG+SIAWA EYLHE +R + L ATH+HEL +++ + +R N + + + + ++FL Sbjct: 694 YDGISIAWAISEYLHEHPSRSKTLFATHYHELNEMATTFERIKNYNVSIKELKDKVLFLR 753 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESK 863 K+ PG ++HS+GI V K+AG+P VI +A ILK EK H+ +++ IQ + Sbjct: 754 KLTPGGSEHSFGIHVAKMAGMPQQVIHKANKILKKLEK--SHSSEELTDKLNSIQNEMQL 811 Query: 864 NNLSKNDKLF---VEKIKCLNLDEMSPLTALKTLYAVK 898 + + +D L E+I L+++ ++P+ AL L +K Sbjct: 812 SFFNLDDPLLEEIKEEITHLDINTLTPVEALMKLNEIK 849 >gi|260102903|ref|ZP_05753140.1| DNA mismatch repair protein HexA [Lactobacillus helveticus DSM 20075] gi|260083292|gb|EEW67412.1| DNA mismatch repair protein HexA [Lactobacillus helveticus DSM 20075] gi|328462816|gb|EGF34683.1| DNA mismatch repair protein MutS [Lactobacillus helveticus MTCC 5463] Length = 865 Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust. Identities = 292/885 (32%), Positives = 482/885 (54%), Gaps = 46/885 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 + +TPMM QY EIK PD+ +FYR+GDFYELF DDA+ ++ L +TLT R IP Sbjct: 3 EKTTPMMEQYYEIKKQYPDAFLFYRVGDFYELFEDDAVKGAQILELTLTHRSNKTKNPIP 62 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP + Y+ L++ G+++A+CEQ+E P +AK +V+R +++LVTPGT+ + Sbjct: 63 MAGVPHMAVDTYVNTLVEKGYKVALCEQLEDPKKAK-----GMVKRGIIQLVTPGTMMNE 117 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSE 201 DSNYL +V ++ + +A+ D+STG I+ + + ++++ + RE++++ Sbjct: 118 GPNDAKDSNYLTSVVTTKSGFGLAYSDLSTGEIYSTHLKSFAAVSNELLSLRTREVVYNG 177 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 E F N+ V+ P E A+ + T G+ EK+A Sbjct: 178 ---PLTEQNKDFMHKANITVSAPTPI------EGEHAEISYVEQNLTNGA----EKSATR 224 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 + Y+ TQ + + + ++ L + ++NLE++ + +G + SL +D Sbjct: 225 QLVGYLLSTQKRSLAHLQIAKSYEVNQYLQMSHTVQNNLELVASAKTGKKMGSLFWVLDK 284 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGRL + +A PL + IN R + + I LK D+ R R Sbjct: 285 THTAMGGRLLKQWLARPLLNVDIINHREKMVQALLDGYFTRENIIDALKGVYDLERLTGR 344 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + G +++ + +++ IL+ ++D + L +K+ L + + + +S+ L Sbjct: 345 IAFGNVNARELLQLSRSLQAVPVILDALNQSD-SDVLTDFAKKIDPL-KGVAELISTTLV 402 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D P +GG +RDG D LD R + K+ + ++ ++T I+NLK+ N G Sbjct: 403 KDPPLLTTEGGLIRDGVDKQLDRYRDAMNNGKKWLVQMETDERQKTGIENLKVGFNKVFG 462 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+I+V++ + S + DR+ +QT++N R+ T EL + EN I A + +E + Sbjct: 463 YYIQVSNGNKSKV-----PLDRYTRKQTLTNAERYITPELKEHENLILEAQTRSTDLEYD 517 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID-NSTNFIVKDGRH 619 F L + + + +L +A +D+ + A +A++ NYCRP +S + V +GRH Sbjct: 518 LFVQLRDEVKKYIPALQKLGNQLAALDVYCSFATVAEQNNYCRPSFHTDSQDIDVVNGRH 577 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VEK + ++ +I ND + + ++L+TGPNM GKST++RQ ALI IMAQ+ Sbjct: 578 PVVEKVM---TAGSYIPNDVKMDSATN-----IFLITGPNMSGKSTYMRQMALIAIMAQV 629 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPA A + I D++F+R+G+AD+L SG+STFMVEM E L AT +S V+ DEIG Sbjct: 630 GSFVPADSAALPIFDQIFTRIGAADDLISGQSTFMVEMSEANDALQYATKRSLVLFDEIG 689 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A A ++YLH+ + L ATH+HELT L ++L N + ++ N + Sbjct: 690 RGTATYDGMALAGAIVKYLHDKVGAKALFATHYHELTSLDETLDYLKNIHVGATEENGKL 749 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE----KLYHHNQKDMRLYYP 855 IFLHK++PG AD SYGI V +LAGLP TV+ A +LK E +L +Q+ P Sbjct: 750 IFLHKILPGPADQSYGIHVAQLAGLPRTVLREATKLLKRLEAQGSELAPVSQQLDLFAQP 809 Query: 856 EIQTKESKNNLSKNDKL------FVEKIKCLNLDEMSPLTALKTL 894 E + E +N S+N + ++ I L L + +PL ++ + Sbjct: 810 EAASDEVDDNDSENSPMTDAEQEVLDDISNLYLADKTPLQIMQMV 854 >gi|259501313|ref|ZP_05744215.1| DNA mismatch repair protein HexA [Lactobacillus iners DSM 13335] gi|302190963|ref|ZP_07267217.1| DNA mismatch repair protein MutS [Lactobacillus iners AB-1] gi|259167283|gb|EEW51778.1| DNA mismatch repair protein HexA [Lactobacillus iners DSM 13335] Length = 854 Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust. Identities = 285/872 (32%), Positives = 478/872 (54%), Gaps = 41/872 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY +IK PD+ +FYR+GDFYELF DDA+ ++ L +TLT R K IPM G Sbjct: 6 TPMMEQYYKIKQQYPDAFLFYRVGDFYELFEDDAVKGAKLLELTLTHRSNKSAKPIPMAG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP + YI L+ G+++AICEQ+E P +A+ +V+R +++LVTPGT+ D Sbjct: 66 VPHLAVDSYINTLVDKGYKVAICEQLEDPKKAQ-----GMVKRGIIQLVTPGTVINDNPD 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 +SNYL ++ W + + D+STG + ++ + ++++++ + RE+++ E Sbjct: 121 QAKESNYLTSLCSNSQGWGLTYCDLSTGESYATHLTSWEMIVNELLSLQTRELVYGETLT 180 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S K +F + ++QP +++ + + T +Q+E A + Sbjct: 181 SD---KQIFLKKAGITLSQP----------VKLSKEHAEVSYVTQQLHNQLEIAATKQLL 227 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSIT 323 +Y+ TQ + + + + L + ++NLE++++ +G + SL +D + T Sbjct: 228 AYLLATQKRSLAHLQVTQSYEPNQYLQMSHIVQTNLELIKSAKTGKKMGSLFWLLDKTST 287 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 GGRL I PL ++I +R + + I K L+ D+ R R+ + Sbjct: 288 AMGGRLLKSWIERPLISLSEIKSRQLVVTALFDDYFSREKIIKQLQGVYDLERLTGRVAL 347 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFL--KNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 G +++ + D + I+N+ KN++ + ++ LK + + KT+ + Sbjct: 348 GSANARELLQLADSLAVVPEIINILANSKNEVLNDFAQKIDPLKGIHDLIVKTIV----E 403 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + P ++GG ++ G + LD R K+ +A + E+T I NL++ +N GY Sbjct: 404 NPPLSTKEGGIIKAGVSSQLDRYRDAMMNGKKWLADMANSEREKTGINNLRVGYNKVFGY 463 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IEVT+S KD DR++ +QT++N R+ T+EL + E I A + + +E E Sbjct: 464 YIEVTNSY-----KDKVPLDRYMRKQTLTNAERYITVELKEHEALILEAQDYSTDLEYEL 518 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY-CRPIIDNSTNFIVKDGRHP 620 F L I + +L ++ ++ +D+ ++L+++ NY C +S+ + +GRHP Sbjct: 519 FTNLREDIKKYIPALQKLAKQLSSLDVLSTFSLLSEQNNYVCPQFSQDSSAINIVNGRHP 578 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + S + +I ND + ++L+TGPNM GKST++RQ ALI+IMAQMG Sbjct: 579 VVEKVM---SDEEYIPNDVKMD-----EQTNIFLITGPNMSGKSTYMRQLALIIIMAQMG 630 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 ++PA A + I DK+F+R+G+ D+L SG+STFMVEM E L AT +S ++ DEIGR Sbjct: 631 CFIPADSAVLPIFDKIFTRIGAGDDLISGKSTFMVEMSEANIALKNATKRSLILFDEIGR 690 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A I+YLH+ + L ATH+HELTDL + L F N + + N +I Sbjct: 691 GTATYDGMALAGAIIKYLHDKVGAKTLFATHYHELTDLDQELAHFKNIHVGATQENGHLI 750 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 FLHK++PG AD SYGI V +LAGLP V+ A +LK EK + NQ ++ Sbjct: 751 FLHKILPGAADQSYGIHVAQLAGLPTKVLREATHMLKQLEK-HSDNQAAFSDEQLDLFGS 809 Query: 861 ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALK 892 ++ +S ++ + +IK L L+E++PL ++ Sbjct: 810 SDQHKMSDEEQDVLTQIKNLYLNEITPLQVMQ 841 >gi|313893371|ref|ZP_07826943.1| DNA mismatch repair protein MutS [Veillonella sp. oral taxon 158 str. F0412] gi|313442012|gb|EFR60432.1| DNA mismatch repair protein MutS [Veillonella sp. oral taxon 158 str. F0412] Length = 877 Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust. Identities = 300/902 (33%), Positives = 492/902 (54%), Gaps = 62/902 (6%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TPMM QY++IK+ PD L+F+R+GDFYELF DDAL+ASR L ITLT R + P Sbjct: 3 KKQTPMMEQYLDIKARYPDELLFFRLGDFYELFNDDALVASRELNITLTGRPTGDEERTP 62 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP H A YI+ L+K G+++AICEQ+E P + K +V+R+VV+++TPGT+ + Sbjct: 63 MCGVPFHAAESYIETLVKKGYKVAICEQLEDP-----KAVKGIVKRDVVKVITPGTVMTE 117 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDR---LISDIMRIDPREII 198 +N+L ++ W + + D+STG + +N D+ + + P EII Sbjct: 118 NGNDARSNNFLSLFYMVKDAWILVFSDVSTGEVIWHRITNCDKRSDMYDALSMYRPSEII 177 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK- 257 E + K E + V P F ++ +A+ V+ FG +E+ Sbjct: 178 LPEGTTLPQDIKDFIENQFSNVVLSP---FSTYYTQREVAE----KAVNHFGDLGLMEED 230 Query: 258 --TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSL 314 A + Y+++ I Y + + + L +D+++ +LEI+ L G ++ +L Sbjct: 231 VWEALGYMLLYLEEIIKSEISHINYVHQLSVGNRLILDTSSLRHLEIIHNLRDGGQKGTL 290 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D ++T G RL + + SPLTD +I R ++ I + ++ +L D Sbjct: 291 LDVLDRTLTPMGARLLKQWLESPLTDVNQIQRRQAAVAELITRGAERSHMRSLLDCIYDF 350 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLK--------K 426 R + R++ G P+D+ +R+ +L + D+ + L G L + Sbjct: 351 ERIVGRVETGSVSPRDLTALRE---------SLAVLPDMKDVL-GTCSSLALTSINDRIQ 400 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 + + L ++D ++G ++DG + LDE RSL S++ +A ++ E T Sbjct: 401 DHKDIYDLLCHAIADQPALTLKEGRVIKDGFNPDLDELRSLATNSEQWLAKMEADIKEAT 460 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 + +K +N GY+ EV+ S K + D FI +QT++N R+ T EL + E + Sbjct: 461 GLSKIKTGYNKVFGYYFEVSHS------KSEQVPDYFIRKQTLANAERYITPELKEFEIK 514 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 I +A + + +E E ++ L N I + + ++ +A +D+ +LA++ E+NY P I Sbjct: 515 ILSAKDKIIALEHELYQQLRNDIKLVIKDVQETARALAELDVLCSLALVGYEENYICPTI 574 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 + ++DGRHP++EK LK++ F+ ND L + + + L+TGPNM GKST+ Sbjct: 575 VMNGQINIRDGRHPVIEKFLKREV---FVPNDIVL----NHDDEEFLLITGPNMAGKSTY 627 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ A+++IMAQ+GS++PA A I VD++F+RVG++D++++G+STFMVEM E A IL Sbjct: 628 MRQAAILMIMAQIGSFIPAREASISPVDRIFTRVGASDDISTGQSTFMVEMKEVAYILEN 687 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT+ S +ILDEIGRGT+T DGLSIA A +E++ + + L ATH+HEL L +S + Sbjct: 688 ATHNSLIILDEIGRGTSTFDGLSIAQAVVEHICKHIHGKTLFATHYHELICLEESYSKLK 747 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN 846 N T+ V + + + FL ++I G AD SYGI V +LAGLPN+V+ RA IL++ E H+ Sbjct: 748 NYTVAVKEKGKDVAFLRRIIKGGADRSYGIHVARLAGLPNSVLKRAEVILESLED-QSHD 806 Query: 847 QKDMRLYYPEIQTKESKNNLSKN------DKLF----VEKIKCLNLDEMSPLTALKTLYA 896 D+ Q ++K LF V+ + +++ M+P+ AL LY Sbjct: 807 TSDLNNRVMGAQPNNVVKPVTKQVSDSPLGNLFTHSVVDSLLAVDVMSMTPIEALNKLYE 866 Query: 897 VK 898 ++ Sbjct: 867 LQ 868 >gi|269797932|ref|YP_003311832.1| DNA mismatch repair protein MutS [Veillonella parvula DSM 2008] gi|269094561|gb|ACZ24552.1| DNA mismatch repair protein MutS [Veillonella parvula DSM 2008] Length = 877 Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust. Identities = 303/893 (33%), Positives = 490/893 (54%), Gaps = 44/893 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TPMM QY++IKS + L+F+R+GDFYELF DDAL+ASR L ITLT R + P Sbjct: 3 KKQTPMMEQYLDIKSRYSEELLFFRLGDFYELFNDDALVASRELNITLTGRPTGDEERTP 62 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP H A YI+ L+K G+++AICEQ+E P + K +V+R+V++++TPGT+ + Sbjct: 63 MCGVPFHAAESYIETLVKKGYKVAICEQLEDP-----KAVKGIVKRDVIKVITPGTVMTE 117 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTG--IFKISTSNHDR--LISDIMRIDPREII 198 +N+L ++ W + + D+STG I+ T+ R + + P EII Sbjct: 118 NGNDARSNNFLSLFYMVKDAWILVFSDVSTGEVIWHRITNCEKRSDMYDALSMYRPSEII 177 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK- 257 E + + + E + V P F ++ +++ V FG +E+ Sbjct: 178 LPEGTILPQDIRDFIENQFSNVVFSP---FSTYYTQREVSE----KAVTHFGDLGLMEED 230 Query: 258 --TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSL 314 A + Y++ I Y + + + L +D+++ +LEI L G ++ +L Sbjct: 231 VWEALGYMLLYLEDIIKSEISHINYVHQLSVGNRLILDTSSLRHLEITHNLRDGGQKGTL 290 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D ++T G RL + + SPLTD +I R ++ I + IQ L D Sbjct: 291 LDVLDRTLTPMGARLLKQWLESPLTDVNQIQRRQAAVAELITRGAERSHIQSFLDCIYDF 350 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R + R++ G P+D+ +R+ + +I N+ L L E++ + + Sbjct: 351 ERIVGRVETGSVSPRDLTALRESLAVLPDIKNV-LSTCSSLALTSINERIHD-HKDIYDL 408 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L +++ +DG ++DG +A LDE RSL S++ +A ++ E T + +K Sbjct: 409 LCRAIAEQPALTLKDGRVIKDGFNADLDELRSLATNSEQWLAKMEADIKEATGLSKIKTG 468 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+ EV+ S K + D FI +QT++N R+ T EL + E +I +A + Sbjct: 469 YNKVFGYYFEVSHS------KSEQVPDYFIRKQTLANAERYITPELKEFEIKILSAKDKI 522 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E E ++ L N I +++ ++ +A +D+ +LA++ E+NY P I + + Sbjct: 523 IALEHELYQQLRNDIKLVIKAVQETARALADLDVLCSLALVGYEENYICPTIVMNGQINI 582 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 +DGRHP++EK LK++ F+ ND L + + + L+TGPNM GKST++RQ A+++ Sbjct: 583 RDGRHPVIEKFLKREV---FVPNDIVL----NHDEEEFLLITGPNMAGKSTYMRQAAILM 635 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMAQ+GS++PA A I VD++F+RVG++D++++G+STFMVEM E A IL AT+ S +I Sbjct: 636 IMAQIGSFIPAREASISPVDRIFTRVGASDDISTGQSTFMVEMKEVAYILENATHNSLII 695 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDEIGRGT+T DGLSIA A +E++ + + L ATH+HEL L +S + N T+ V + Sbjct: 696 LDEIGRGTSTFDGLSIAQAVVEHICKHIHSKTLFATHYHELICLEESYSKLKNYTVAVKE 755 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH----NQKDM 850 + + FL ++I G AD SYGI V +LAGLPN+V+ RA IL++ E H N + M Sbjct: 756 KGKDVAFLRRIIKGGADRSYGIHVARLAGLPNSVLKRAEVILESLEDQSHDASDLNNRVM 815 Query: 851 RLYYPEI-QTKESKNNLSKNDKLFVEKI--KCLNLDEMS--PLTALKTLYAVK 898 + +T + + S LF + L +D MS P+ AL LY ++ Sbjct: 816 GAQLTNVAKTAVKQVSDSPLGNLFTHSVVDSLLEVDVMSMTPIEALNKLYELQ 868 >gi|54297717|ref|YP_124086.1| DNA mismatch repair protein MutS [Legionella pneumophila str. Paris] gi|81679454|sp|Q5X4B2|MUTS_LEGPA RecName: Full=DNA mismatch repair protein mutS gi|53751502|emb|CAH12920.1| DNA mismatch repair protein MutS [Legionella pneumophila str. Paris] Length = 846 Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust. Identities = 292/828 (35%), Positives = 467/828 (56%), Gaps = 49/828 (5%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S TPMM+QY+ IK+ PD L+FYRMGDFYELFFDDA AS+ L +TLT RG+ K IPM Sbjct: 4 SHTPMMQQYLRIKTDYPDMLLFYRMGDFYELFFDDAKRASQLLDLTLTHRGQSADKPIPM 63 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H +Y+ +L+K G +AICEQI P A +G V R V R++TPGT+T++ Sbjct: 64 AGVPYHAVENYLARLLKKGESVAICEQIGDP--ATSKGP---VERQVTRIITPGTVTDEA 118 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSE 201 LL N L+A+ + + IAW+D+ G F + T H +L ++++R+ P E++ E Sbjct: 119 LLDARKDNILLAIHTQKQKIGIAWVDLGGGRFHLQELTEEH-QLNAELVRLQPAELLCKE 177 Query: 202 KELSHAEYKSLFETLGNVAVA-QPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTA 259 L N AV +P FD S + + + +++T + FG + A Sbjct: 178 S-------TPLPSFCSNFAVKFRPGWEFDASNAHKLLCEQFSVTDLSAFGEQNYPTALIA 230 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A A ++Y+K TQ + P + E + L +D++ + +LE+ + G E LL +D Sbjct: 231 AGALLAYLKTTQKQSLPHLTTLTLEQSEDYLQLDASTQKHLELFENIHGGGEHCLLSILD 290 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSIN--FFIQNPILINPIQKILKSSPDVPRS 377 + G RL + PL I TR +I F+Q + + +++K DV R Sbjct: 291 KTACAMGSRLLKRWLGKPLKQHAIIQTRQQAIKEIIFLQQDV---SLHQLIKQCADVERI 347 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKK---LPQSLE 432 +SR+ + P+D+ S + L L + ++L E + ++KK L+ Sbjct: 348 VSRIALKSARPRDLV-------SLLQTLTLLPAIHDELQENKSLLINEIKKEISPLPLLQ 400 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 + L + + D+ P RDGG + G D LDE R+L + + L+ + T + LK Sbjct: 401 QLLETAIIDNPPMLIRDGGVIAPGFDEELDELRNLSSNAHETLVKLEQEEKNRTGLSTLK 460 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 + +N+ G++IE++ + A + F +QT+ N+ R+ T EL E+++ +A + Sbjct: 461 LGYNSVQGFYIELSKAQAQ------NAPPHFHRKQTLKNVERYITPELKLFEDKVLSAQS 514 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 AL E ++ L I + L + ++ +A +D+ + LA A+ N+ P + + Sbjct: 515 KALAREKWLYDNLLEEIQQYIPELSDLAKSLAQLDVLVTLAERAQSLNWNCPNLVPESGI 574 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 +++ GRHP++E L+++ FIAND +L PN + L+TGPNMGGKST++RQ AL Sbjct: 575 MIQAGRHPVIEPLLQER----FIANDLELK-PNQN----MLLITGPNMGGKSTYMRQTAL 625 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 IV+++ +GS+VPA +G +D++F+R+G++D+L+SGRSTFMVEM ETA IL QAT+QS Sbjct: 626 IVLLSHIGSFVPADEVTLGPLDRIFTRIGASDDLSSGRSTFMVEMTETAQILRQATSQSL 685 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 V++DEIGRGT+T DG+++A+A+ +L T + L +TH+ ELT+L K N LQ Sbjct: 686 VLIDEIGRGTSTYDGMALAYASCAFLASTIKAYTLFSTHYLELTELPKEFSCIRNVHLQA 745 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 S I+FL++V G A+ SYG++V +LAG+P V+ A++ L + Sbjct: 746 SIKTGQIVFLYRVEEGCANRSYGLEVAELAGIPKEVLKLAHEHLNQIQ 793 >gi|313888276|ref|ZP_07821947.1| DNA mismatch repair protein MutS [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845679|gb|EFR33069.1| DNA mismatch repair protein MutS [Peptoniphilus harei ACS-146-V-Sch2b] Length = 870 Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust. Identities = 305/895 (34%), Positives = 487/895 (54%), Gaps = 58/895 (6%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 N + TPMM+QY+ +K NPDS++F+R+GDFYE+FFDDALLASR L ITLT+R L + Sbjct: 2 NREKLTPMMQQYLAVKDENPDSILFFRLGDFYEMFFDDALLASRELEITLTRRDAGLEEK 61 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 PMCGVP H A+ YI KLI G+++AIC+Q+E P AK +V+R V +++TPGT T Sbjct: 62 APMCGVPYHVASSYISKLIDKGYKVAICDQVEDPKLAK-----GIVKREVTQIITPGTFT 116 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFK------ISTSNHDRLISD-IMRID 193 + + L +NYL+++ + + D STG +S + R + D + RI Sbjct: 117 DTEYLKSDLNNYLLSIYIQGYSLNLTYSDYSTGEIYFTNKTFLSKTELFRFLQDQVDRIS 176 Query: 194 PREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISES------------RIADYY 241 P EI+ +E L A +K + + NVF + I+E+ +D + Sbjct: 177 PNEILINEDAL--ATFKK--------EIKKNNVFLNPYIAENLKDSNIIKDFGNYFSDNF 226 Query: 242 NITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLE 301 D V+ T+ + Y+ TQ +N I + L +D +++ LE Sbjct: 227 KNNLRDFLSDNKIVDYTSLKKILQYLVVTQKINLKHINNISYYNNYDFLLLDESSKRTLE 286 Query: 302 ILRTLSG-SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL 360 +++ L+ +++ SLL +D T G R + + SPL D KI R + I F ++ +L Sbjct: 287 VVKGLNTFTKKGSLLDVLDKCSTSMGSRKLKKWVESPLVDLNKIEERQNIIESFTRDLLL 346 Query: 361 INPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGA 420 + I+KIL+ D+ R + ++ G P+++ ++ I + N + L+ + L+ Sbjct: 347 QDKIEKILREVYDIERLVVKISNGSINPRELYSLKSTIENA-NKIKAILEGQDNKYLKLL 405 Query: 421 VEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 ++ L ++ + +L ++ P + +++G LDE + + K + + Sbjct: 406 SKEFIDLSDVYDE-IDKVLIENPPVVIEENRIIKEGYSLELDELFKIATEGKNWLLDFEE 464 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 K T IK LK+KHN LGYFIEVT S + +D +I +QT+ RF ++EL Sbjct: 465 KERNRTGIKKLKVKHNKILGYFIEVTKSFLDQVPED------YIRKQTLVGSERFFSMEL 518 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 D+E ++ + AL ++ E + L + I ++ + + ++ +D ++LA ++ N Sbjct: 519 KDMEGKLLGSKERALSMQAEIYNNLKDFIGKEIYRIQILADKLSKLDSLLSLAKVSNLNN 578 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 Y RP +N +K GRHPIVE +K F+ ND + D S + ++TGPNM Sbjct: 579 YVRPKFNNEGYIEIKAGRHPIVESYMKDDF---FVPNDTYI----DTKSNMIHIITGPNM 631 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GKST++RQ ALI IMA +G +VP +I ++D++F+R+G++DNLA G+STFMVEM E Sbjct: 632 AGKSTYMRQVALITIMAHIGCFVPCDSCNISLIDRIFTRIGASDNLAMGQSTFMVEMQEV 691 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 A I+ A+++S +ILDE+GRGT+T DGL+IA A IEY+ E + + L ATH+HEL L Sbjct: 692 ADIIQNASSKSLLILDEVGRGTSTFDGLAIANAIIEYIAENIKAKTLFATHYHELVHLED 751 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 N T+ V + IIFL K+I G ++SYGI V KLAG+ + +I+RA D+L E Sbjct: 752 KYDSVENLTIAVDRQEDDIIFLRKIIKGFTNNSYGIDVAKLAGIDDRIINRAKDVLALIE 811 Query: 841 KLYHHNQKDM-RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 K D+ + Y E +T N F+ K++ +N+ E+SP+ A L Sbjct: 812 KENEGLNIDLNKEYIREEKTSPEVEN-------FMNKLRQINILEISPMEAFNLL 859 >gi|54294692|ref|YP_127107.1| DNA mismatch repair protein [Legionella pneumophila str. Lens] gi|81679202|sp|Q5WVP6|MUTS_LEGPL RecName: Full=DNA mismatch repair protein mutS gi|53754524|emb|CAH16008.1| DNA mismatch repair protein MutS [Legionella pneumophila str. Lens] Length = 846 Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust. Identities = 291/826 (35%), Positives = 466/826 (56%), Gaps = 45/826 (5%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S TPMM+QY+ IK+ PD L+FYRMGDFYELFFDDA AS+ L +TLT RG+ K IPM Sbjct: 4 SHTPMMQQYLRIKTDYPDMLLFYRMGDFYELFFDDAKRASQLLDLTLTHRGQSADKPIPM 63 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H +Y+ +L+K G +AICEQI P A +G V R V R++TPGT+T++ Sbjct: 64 AGVPYHAVENYLARLLKKGESVAICEQIGDP--ATSKGP---VERQVTRIITPGTVTDEA 118 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSE 201 LL N L+A+ + + IAW+D+ G F + T H +L ++++R+ P E++ E Sbjct: 119 LLDARKDNILLAIHTQKQKIGIAWVDLGGGRFHLQELTEEH-QLNAELVRLQPAELLCKE 177 Query: 202 KELSHAEYKSLFETLGNVAVA-QPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTA 259 L N AV +P FD S + + + +++T + FG + A Sbjct: 178 S-------TPLPSFCSNFAVKFRPGWEFDASNAHKLLCEQFSVTDLSAFGEQNYPTALIA 230 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A A ++Y+K TQ + P + E + L +D++ + +LE+ + G E LL +D Sbjct: 231 AGALLAYLKTTQKQSLPHLTTLTLEQSEDYLQLDASTQRHLELFENIHGGGEHCLLSILD 290 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSIN--FFIQNPILINPIQKILKSSPDVPRS 377 + G RL + PL I TR +I F+Q + + +++K DV R Sbjct: 291 KTACAMGSRLLKRWLGKPLKQHAIIQTRQQAIKEIIFLQQDV---SLHQLIKQCADVERI 347 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK---LPQSLEKT 434 +SR+ + P+D+ + + IL + ++L E + ++KK L++ Sbjct: 348 VSRIALKSARPRDLVSLLQTL-----ILLPAIHDELQENKTLLINEIKKEISPLPLLQQL 402 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L + + D+ P RDGG + G D LDE R+L + + L+ + T + LK+ Sbjct: 403 LETAIIDNPPMLIRDGGVIAPGFDEELDELRNLSSNAHETLVKLEQEEKNRTGLSTLKLG 462 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N+ G++IE++ + A + F +QT+ N+ R+ T EL E+++ +A + A Sbjct: 463 YNSVQGFYIELSKAQAQ------NAPPHFHRKQTLKNVERYITPELKLFEDKVLSAQSKA 516 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L E ++ L I + L + ++ +A +D+ + L A+ N+ P + + ++ Sbjct: 517 LAREKWLYDNLLEEIQQYIPELSDLAKSLAQLDVLVTLTERAQSLNWNCPNLVPESGIMI 576 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 + GRHP++E L+++ FIAND +L PN + L+TGPNMGGKST++RQ ALIV Sbjct: 577 QAGRHPVIEPLLQER----FIANDLELK-PNQN----MLLITGPNMGGKSTYMRQTALIV 627 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++A +GS+VPA +G +D++F+R+G++D+L+SGRSTFMVEM ETA IL QAT+QS V+ Sbjct: 628 LLAHIGSFVPADEVRLGPLDRIFTRIGASDDLSSGRSTFMVEMTETAQILRQATSQSLVL 687 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DG+++A+A+ +L T + L +TH+ ELT+L K N LQ S Sbjct: 688 IDEIGRGTSTYDGMALAYASCAFLASTIKAYTLFSTHYLELTELPKDFSCIRNVHLQASI 747 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 I+FL++V G A+ SYG++V +LAG+P V+ A++ L + Sbjct: 748 KTGQIVFLYRVEEGCANRSYGLEVAELAGIPKEVLKLAHEHLNQIQ 793 >gi|223933229|ref|ZP_03625220.1| DNA mismatch repair protein MutS [Streptococcus suis 89/1591] gi|223898159|gb|EEF64529.1| DNA mismatch repair protein MutS [Streptococcus suis 89/1591] Length = 846 Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust. Identities = 286/817 (35%), Positives = 462/817 (56%), Gaps = 40/817 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK+ PD+ + +RMGDFYELF++DA+ A++ L ++LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKAQYPDAFLLFRMGDFYELFYEDAVEAAQILELSLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A YI L+++GH++AI EQ+E P +A +V+R VV+++TPGT+T+ + Sbjct: 67 VPYHAAQQYIDTLVELGHKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVTDSSKM 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSEKEL 204 DSNYL+A+ R ++A++++D+STG F + S + L +I + RE++ L Sbjct: 122 G-ADSNYLVAIDRQGVQFALSYMDVSTGQFFVTSLDDFTSLCGEIRNLRARELVIG-YAL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E + +F N+ ++ F+ ++E ++ +D S + +EK AA + Sbjct: 180 SEEE-EQVFSNQMNLLLS-----FEDEVTE-------DVQLIDN--SLTDLEKAAAGKLL 224 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT-LSGSREQSLLKTIDYSIT 323 SY+ +TQM + + +I+ L +D A +S+L++L +G + SL +D + T Sbjct: 225 SYLHRTQMRDLSHLQKVVHYEIKDYLQMDYATKSSLDLLENGRTGKKHGSLYWLLDETKT 284 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL I PL D +I R + F+ + + + LK D+ R SR+ Sbjct: 285 AMGMRLLRTWIDRPLIDLKRIENRQAIVQVFLDYFFERSDLVEALKGVYDIERLASRVSF 344 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 G+ PKD+ + + + I N+ + + P L V L +P+ L +SS + + Sbjct: 345 GKTMPKDLLQLSQTLGNIPAIKNILQQINEPA-LGNLVAGLDPIPE-LHALISSAIDPEA 402 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 DG +R G D +LD+ R + + IA ++ K E + I NLKI +N GY+ Sbjct: 403 QGTITDGNIIRTGFDETLDQYRLVIREGAGWIAEIEAKEREASGINNLKIDYNKKDGYYF 462 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 VT+S+ D F + T+ N R+ T EL +E ++ A + + +E E F Sbjct: 463 HVTNSNLG------NVPDHFFRKATLKNSERYGTEELAKIEGQMLEARDKSANLEYEIFM 516 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 + + + L ++ IA ID+ A A++A++Q+ P + + GRH +VE Sbjct: 517 RIRQEVEKYIGRLQKLARTIATIDVLQAFAVVAEQQHLVCPRFTDQRELTIDRGRHAVVE 576 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 K + +Q+ +I N L+ + L+TGPNM GKST++RQ A+IVIMAQMGSYV Sbjct: 577 KVMGKQT---YIPNSIHLNTDT-----HMQLITGPNMSGKSTYMRQLAVIVIMAQMGSYV 628 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA A + I D +F+R+G+AD+L SG+STFMVEM+E + AT++S ++ DE+GRGTA Sbjct: 629 PADQAELPIFDAIFTRIGAADDLVSGQSTFMVEMMEANKAVRLATDRSLILFDELGRGTA 688 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DG+++A + IEY+H+ + L ATH+HELTDLS++L+ N + + + + FLH Sbjct: 689 TYDGMALAQSIIEYIHDKIGAKTLFATHYHELTDLSQTLEHLENVHVSTLEKDGQVTFLH 748 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 K+ G AD SYGI V K+AG+P ++ RA IL+T E Sbjct: 749 KIAQGPADKSYGIHVAKIAGMPEELLQRADRILQTLE 785 >gi|157692388|ref|YP_001486850.1| DNA mismatch repair protein MutS [Bacillus pumilus SAFR-032] gi|167012381|sp|A8FDH3|MUTS_BACP2 RecName: Full=DNA mismatch repair protein mutS gi|157681146|gb|ABV62290.1| DNA mismatch repair protein MutS1 [Bacillus pumilus SAFR-032] Length = 858 Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust. Identities = 298/894 (33%), Positives = 491/894 (54%), Gaps = 56/894 (6%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + S TPM++QY+ IK+ D+ +F+R+GDFYE+FFDDA AS+ L ITLT R G I Sbjct: 1 MASYTPMIQQYLNIKAEYQDAFLFFRLGDFYEMFFDDAKEASQELEITLTSRD---GGTI 57 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A+ YI++LI G+++AICEQ+E P AK +V+R VV+L+TPGT+ E Sbjct: 58 PMCGVPYHSASAYIEQLISKGYKVAICEQVEDPKTAK-----GVVKREVVQLITPGTVME 112 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFS 200 + LS ++N++ +V + + +A D+STG + + D ++S+I + +EI+ S Sbjct: 113 GKGLSENENNFIASVTKFENGYGLALSDLSTGENMAAFIDRLDEVVSEIYSVGAKEIVVS 172 Query: 201 EKELSHAEYKSLFETL-GNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 K L K+L E ++ + D + R+ + TF + Sbjct: 173 -KHLDEETVKTLKERCQATISYEDSDELIDEA---ERLVSRLSEQLRSTFLTL------- 221 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTI 318 +Y+++TQ + + + +++ T+ ID ++ NLE+ T+ S S++ SLL + Sbjct: 222 ----YAYLRRTQKRSLDHLQQVQVFELEQTMKIDLYSKRNLELTETIRSKSKKGSLLWLL 277 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D + T GGRL + I PL + I R + + + + +++ LK D+ R Sbjct: 278 DETKTAMGGRLLKQWIDRPLIRLSHIKERQEMVQILMDHFFEREDLRERLKQVYDLERLA 337 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 R+ G +D+ +++ ++ I L + LPEE+ + L L L Sbjct: 338 GRVAFGNVNARDLIQLKESLKQVPAIKELV--HSLPEEMAKSRANDIDLCDDLLNLLEDA 395 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 L ++ P ++G ++DG +A LDE R K IA L+ + E T I++LK+ N Sbjct: 396 LYENPPMTLKEGNLIKDGYNAKLDEYRDASRNGKDWIARLEQQEREYTGIRSLKVGFNKV 455 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IEVT ++ +L++ R+ +QT++N R+ T EL + E I A ++ +E Sbjct: 456 FGYYIEVTRANTHLLEEG-----RYERKQTLANAERYITPELKEKEALILEAESNISELE 510 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 E F L + L ++ ++ +D A +++++ Y RP ++ DGR Sbjct: 511 YELFAALREQVKVYIPRLQLLAKQMSELDALQCFATVSEKRRYIRPEFSEDEVDVI-DGR 569 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VEK + Q ++ NDC + N + L+TGPNM GKST++RQ ALI I+AQ Sbjct: 570 HPVVEKVMDHQE---YVPNDCHMG-----NGRQTLLITGPNMSGKSTYMRQMALISILAQ 621 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +G +VPAS A + I D++F+R+G+AD+L SG+STFMVEM+E + + AT S ++ DEI Sbjct: 622 IGCFVPASKATLPIFDQIFTRIGAADDLISGQSTFMVEMLEAKNAMVHATKNSLILFDEI 681 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DG+++A A IE++H+ + L +TH+HELT L L N ++ + Sbjct: 682 GRGTSTYDGMALAQAIIEFVHDHVGAKTLFSTHYHELTVLESQLSELKNVHVRAEEHEGT 741 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH------------- 845 ++FLH++ G AD SYGI V +LA LP+ +I RA IL E H Sbjct: 742 VVFLHQIKEGAADKSYGIHVAQLAELPDAIIDRAQTILTELESGSHEVTPHVSAAPKTEK 801 Query: 846 NQKDMRLYYPEIQTK-ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ +L + E++ K ++K L + D+ +E++K NL +M+PL A+ LY ++ Sbjct: 802 AEEKQQLSFFEVEEKPQTKPVLKQKDQAVIEELKSFNLMDMTPLEAMTKLYELQ 855 >gi|257457556|ref|ZP_05622723.1| DNA mismatch repair protein MutS [Treponema vincentii ATCC 35580] gi|257444942|gb|EEV20018.1| DNA mismatch repair protein MutS [Treponema vincentii ATCC 35580] Length = 880 Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust. Identities = 309/901 (34%), Positives = 474/901 (52%), Gaps = 71/901 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ IK+ D+++F+R+GDFYE+F DDA+ S+ L +TLT+R PMCG Sbjct: 8 TPMMQQYLSIKAQYKDAVLFFRLGDFYEMFNDDAIEVSKLLNLTLTQRTGS-----PMCG 62 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H + YI +L++ G ++AICEQ+ + + L R +V ++TPGT T D L Sbjct: 63 IPYHASRIYIARLLRAGKKVAICEQVSDVVPGE------LTERKIVEVITPGTATGDDFL 116 Query: 146 SPTDSNYLMAVARIRTEW----------AIAWIDISTG-IFKISTSNHD---RLISDIMR 191 +NYL AV E A++D+STG F S D + ++ R Sbjct: 117 EQGQNNYLAAVYCTPKEITYNGVTDVFIGFAYLDVSTGEFFATSFPRSDFAEQFKKELGR 176 Query: 192 IDPREIIF---------SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYN 242 + PREI+ + K L EY + + L P+ F + +E R+ + Sbjct: 177 VQPREILIQISLADSVPALKALC-GEYPQMLQNL------YPDWHFSAASAEKRLCACFG 229 Query: 243 ITTVDTFG-SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLE 301 ++ +FG + E A + Y+ +T P I + + +D A R NLE Sbjct: 230 TESLKSFGLTAPSPELPPAGLLLQYLDQTTGAALPHITGIKVYRDSDFVMMDDATRKNLE 289 Query: 302 ILRTLSGSREQ-SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL 360 +L+ L S + +L +T++Y+ T G RL + + PL + +IN RL+ +N Sbjct: 290 LLQNLHDSTDAFTLFETVNYAKTAMGTRLLRQWLYHPLRTAEEINARLNKTVALFRNEKA 349 Query: 361 INPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL-------FLKNDL 413 + ++ L + D+ R R+ + R KD+ I+ +++ I +++L FL+ L Sbjct: 350 LAAVRTTLAAVLDIRRLTGRVAMQRAHGKDLLGIKQSLKACIELVHLSRINSLFFLQ--L 407 Query: 414 PEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKR 473 P+EL +E L L L +++D P +GG ++ G LDE R +RD + + Sbjct: 408 PQELHDDMEGLYTL-------LDKSIAEDCPIALTEGGLIKQGWSEKLDELRDMRDNANK 460 Query: 474 IIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLT 533 ++ + K E++ IKNLKIK+N GYF+EVT + K +E FI R++++ Sbjct: 461 LLEAYLEKEREKSGIKNLKIKYNRLSGYFLEVTRGTL----KTVEIPKHFIRRRSLTTAD 516 Query: 534 RFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALA 593 RFTT +L LE ++ + + + E E F + + + L ++ IA +D+ + A Sbjct: 517 RFTTDDLSKLETKLNDVGENIIACEKELFLAVHTEVYNRIGLLHLLAKEIAELDVLQSFA 576 Query: 594 ILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLW 653 A + +P +++GRHP+VE L + F+ N LS D + Sbjct: 577 YAAALHAWVKPEFSADGLLDIREGRHPVVENHL---PAGEFVPNSIKLSSAADADIPSFA 633 Query: 654 LLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTF 713 L+TGPNM GKSTFLRQ ALIV++AQ+GS+VPA A + VD +F RVG++DNLA G STF Sbjct: 634 LITGPNMAGKSTFLRQTALIVLLAQVGSFVPAEKALLTPVDCIFCRVGASDNLARGESTF 693 Query: 714 MVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFH 773 +VEM ETA IL A+ S VI+DEIGRGT+T DG SIA A EYL +T + L ATH+H Sbjct: 694 LVEMTETAYILRNASVNSLVIMDEIGRGTSTGDGFSIARAVSEYLLQTIGAKTLFATHYH 753 Query: 774 ELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAY 833 EL L R L V+++ I+FL KVI GIA HSYG+ V +LAGLP TVI RA Sbjct: 754 ELAQLIHP--RLQRLCLDVAETEGKIVFLKKVIEGIAAHSYGVHVAELAGLPETVIRRAT 811 Query: 834 DILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKT 893 ++L T PE + + NL +++L + +I + D +PL AL+ Sbjct: 812 ELLNT---QVSGTAVSTDFTVPEKKHPAPEKNLFSDEELIINEILSTDTDGTTPLQALQM 868 Query: 894 L 894 + Sbjct: 869 I 869 >gi|330836559|ref|YP_004411200.1| DNA mismatch repair protein mutS [Spirochaeta coccoides DSM 17374] gi|329748462|gb|AEC01818.1| DNA mismatch repair protein mutS [Spirochaeta coccoides DSM 17374] Length = 884 Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust. Identities = 295/830 (35%), Positives = 463/830 (55%), Gaps = 39/830 (4%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 ++E + +TPMM+QY++IK+ + D ++F+R+GDFYE+F DDA SR L +TLT+R Sbjct: 2 MKEQVLKNTPMMQQYLDIKARHVDMILFFRLGDFYEMFMDDAREVSRLLNLTLTQRAG-- 59 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 +PMCG+P H A +YI++L+ G +IAICEQ+E + K SL RR VV+++TP Sbjct: 60 ---VPMCGIPYHAARNYIKRLLDEGKKIAICEQVEMTSDVK-----SLARREVVQIITPA 111 Query: 138 TLTEDQLLSPTDSNYLMAVARIRT-EWAIAWIDISTGIFKISTSNHD---RLISDIMRID 193 T+ +D L S+Y++ +A + +A DIS+G F + D R+ S I + Sbjct: 112 TVVDDDYLDALSSSYIVCLASVHAGSMPVAVTDISSGEFLLDVLEEDHLPRIRSLIAQYR 171 Query: 194 PREIIFSEKE-LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-S 251 P+EI+ E E SH+ + +L + + P+ +F + + + + + FG Sbjct: 172 PKEILVDEDEYFSHSNFAALVDEGQAMVTKLPHGYFSVHDGFTLLCGHLGLANLKAFGIP 231 Query: 252 FSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEIL-RTLSGSR 310 A AA+ Y+ T + I + +D A R NLEI+ + G++ Sbjct: 232 GDHPSLAAGGAAMRYLMDTARSSLTQITAFRLVTSGGLMQMDEATRRNLEIVVNSQDGTQ 291 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 + SL +D++ T G RL +++P+TD T+++ R I F + + ++ L + Sbjct: 292 KFSLFDAVDHTRTAGGTRLLKSWLSAPITDMTELDRRHGWIASFCDDVEELKRVRNELGT 351 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRG---AVEKLKKL 427 D R SR+ + + P D+ I+ I + I++ K++L + L + E L+ L Sbjct: 352 VLDAVRLSSRVAMNKAVPHDLVSIKQTISTFFRIVSE--KHELYQMLLSYHVSDENLESL 409 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 +L T+ +++D +G ++DG DA LDE R RD I+ K ET Sbjct: 410 -LTLMMTIGQAINEDSKGPFEEGAVIKDGYDAVLDELRGFRDHGTDILEEYLAKVKGETG 468 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 I L++ +N +G+++EV+ + + F +QT+ N R+TT ELI E RI Sbjct: 469 ITTLRLSYNKIIGHYLEVSKGQVDKVPAN------FYRKQTLVNAERYTTDELIACETRI 522 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 A + A E +E + E + + ++ +D+ + A LA+E++Y RP Sbjct: 523 LRAVSDAEKRERHVYEAVMEDTRRNMEKILAVGKFLSELDVYQSHATLARERSYIRPEFV 582 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 + + +GRHP+VEKTL+ + F++N+ D+ ++NSG+ L+TGPNM GKST+L Sbjct: 583 MTDVLHITEGRHPVVEKTLR---AGTFVSNNLDM----EENSGRFCLITGPNMAGKSTYL 635 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQNALIV++AQ GS+VPA+ +G+VD+L+ RVG++DNLA G STF+VEM E A I+ A Sbjct: 636 RQNALIVLLAQSGSFVPATSVRMGLVDRLYCRVGASDNLARGESTFLVEMQEAAHIIRTA 695 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 T S VI+DEIGRGT+T DG+SIA A + L E R + L ATH+HELT L S + Sbjct: 696 TPNSLVIMDEIGRGTSTQDGMSIACAIMRRLQEM-RTKTLFATHYHELTMLDTS--QIQL 752 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILK 837 TL+V+ IIF+ KVIPG+A+ SYG+ V LAGLP V+ A D K Sbjct: 753 LTLEVAQKARKIIFMRKVIPGVANSSYGLHVAALAGLPVDVVRNAADFQK 802 >gi|28378884|ref|NP_785776.1| DNA mismatch repair protein [Lactobacillus plantarum WCFS1] gi|38258029|sp|Q88UZ7|MUTS_LACPL RecName: Full=DNA mismatch repair protein mutS gi|28271721|emb|CAD64627.1| DNA mismatch repair protein MutS [Lactobacillus plantarum WCFS1] Length = 896 Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust. Identities = 282/817 (34%), Positives = 459/817 (56%), Gaps = 36/817 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY +K+ PD+ +FYR+GDFYE+FFDDA+ ++ L +TLT R IPMCG Sbjct: 8 TPMMRQYFAVKNQYPDAFLFYRLGDFYEMFFDDAIKGAQLLELTLTTRNHSAENPIPMCG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP +YI L+ G+++AICEQ+E P AK +V+R V++LVTPGT E Sbjct: 68 VPHRAVQNYIDILVDKGYKVAICEQMEDPKLAK-----GMVKREVIQLVTPGTTLERGAE 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204 +NYL A+ + ++ A+ D+STG K S + +D LI+++ + +EI+ + Sbjct: 123 QAKTNNYLTALIQRDQQYGFAYADLSTGELKTSVLTTNDTLINELTSLQTKEIVVDDSVA 182 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S + + +TLG + Q NV +++++ TVD +E+ + Sbjct: 183 S--DLRDQIKTLGILISEQNNV-----TPQAQLSYLTQDLTVD-------LEQQVVERLL 228 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSIT 323 YI TQ + + + L +D ++ NLE+++++ +G ++ +LL +D + T Sbjct: 229 MYITVTQKRSLAHLQKAIAYEPSYFLKLDHNSKYNLELMKSIRTGKKQGTLLWLLDETKT 288 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 GGRL + I PL I TR + + + + + +Q+ L D+ R R+ Sbjct: 289 AMGGRLLKQWIDRPLIVKADIETRQNKVATLLDHYFERSNLQEELTKVYDLERLAGRVAF 348 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 G +D+ ++ +R I + + D + V +L + + + + + + +D Sbjct: 349 GSVNGRDLVQLKTSLRQIPKIRYILSELD-TQVFNDEVNQLDPV-EDVADLIDAAIVEDA 406 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P DGG ++DG + LD+ R + K+ IA L+ + T IKNLKI N GY+I Sbjct: 407 PLSVTDGGVIKDGYNEQLDQYRDAMNNGKKWIAELEAQERATTGIKNLKIGFNRVFGYYI 466 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EVT ++ + L KDR+ +QT++N RF+T EL E+ I A + + +E + F Sbjct: 467 EVTKANLAQL-----PKDRYERKQTLTNAERFSTPELKSHESLILEAESHSTDLEYQLFT 521 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 + + + + L ++ +A ID+ + A+++++ ++ RP + S + + DGRHP+VE Sbjct: 522 KVRETVKKAIQRLQTLAKAVAAIDVLQSFAVVSEDYHFVRPKLTKSHDLKIVDGRHPVVE 581 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 K + QS ++ N+ +S P++ + L+TGPNM GKST++RQ AL VIMAQ+G +V Sbjct: 582 KVMGNQS---YVPNNVTMS-PDET----VLLITGPNMSGKSTYMRQLALTVIMAQIGCFV 633 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA A + I D++F+R+G+ D+L SG+STFMVEM E + L AT S V+ DEIGRGTA Sbjct: 634 PAKSAQLPIFDQIFTRIGATDDLISGQSTFMVEMQEANNALQHATANSLVLFDEIGRGTA 693 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DG+++A A IE++H + L +TH+HELT L + L N + ++ + ++FLH Sbjct: 694 TYDGMALAQAIIEFVHNHIHAKTLFSTHYHELTALDQELSGLRNVHVGATEQDGELVFLH 753 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 KV PG AD SYG+ V KLAG+P +++ RA IL + E Sbjct: 754 KVEPGAADKSYGVHVAKLAGMPTSLLERANKILTSLE 790 >gi|255036742|ref|YP_003087363.1| DNA mismatch repair protein MutS [Dyadobacter fermentans DSM 18053] gi|254949498|gb|ACT94198.1| DNA mismatch repair protein MutS [Dyadobacter fermentans DSM 18053] Length = 864 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 282/833 (33%), Positives = 462/833 (55%), Gaps = 35/833 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ +QY +IK+ P +L+ +R+GDFYE F +DA+ AS+ LGI LT+R G + G Sbjct: 8 TPLNKQYNQIKAKYPGALLLFRVGDFYETFGEDAVRASKILGIVLTRRNNG-GAHEELAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H+ ++Y+ KL++ G R+AIC+Q+E P AK +V+R V LVTPG D +L Sbjct: 67 FPHHSLDNYLPKLVRAGERVAICDQLEDPAAAK-----GIVKRGVTELVTPGVSFNDNVL 121 Query: 146 SPTDSNYLMAVARIRTE--WAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 +NYL AV + ++ + IA++DISTG F S N + + P E+++ +K Sbjct: 122 DIRKNNYLAAV-HVGSDGLYGIAFLDISTGEFMASQGNAAYIDKMLQGFGPAEVLYCKKH 180 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAAAA 262 E+ LF + + + F + ++ ++ TT+ +G S + AA Sbjct: 181 --KQEFNELFGGKYHTFHLE-DWCFGYDYGYEQLTGHFQTTTLKGYGVESLPLGIIAAGV 237 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 + Y+++T+ I R + + +++D NLE++ L+ +D+++ Sbjct: 238 VLHYLRETEHKEVAHISRITRLEEEKYVWLDRFTVRNLELVYA-QQEGGVPLIDILDHTV 296 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G R + + PL D I RL ++ F+ + L + K D+ R +S++ Sbjct: 297 TPMGARQLRKWMVLPLKDKAPIEERLSAVEHFLASEELHESLVGYFKQIGDLERLISKVA 356 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 + R P+++ ++ ++ + L L + ++ ++ L + ++K L DD Sbjct: 357 VRRINPRELVQLKKSLKQVAPVKQL-LAGGILDKFASQLDACGALVEKIDKELR----DD 411 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P G ++ G D+ LDE ++ + K + LQ + E T I +LKI +N GY+ Sbjct: 412 APVLSNQGRMVQSGVDSELDELHAISYEGKDYLIKLQNREIERTGISSLKIAYNKVFGYY 471 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 +EVT + S + D +I +QT+ N R+ T EL + E +I NA + IE F Sbjct: 472 LEVTHAHQSKVPAD------WIRKQTLVNAERYITPELKEYEEKIMNAEDRISAIEFRIF 525 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 L E ++ + VI+ +D+ + A+ A++ Y +P+I +K+GRHP++ Sbjct: 526 SELVQKAAEFVGAIQQNALVISALDVLSSFALAARKNKYAKPVISEGNELDIKEGRHPVI 585 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 E+ L S ++ ND L D +S ++ ++TGPNM GKS LRQ ALIV+MAQMGS+ Sbjct: 586 EQQLPVGES--YVPNDVYL----DDSSQQIIIITGPNMAGKSALLRQTALIVLMAQMGSF 639 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA A +GIVDK+F+RVG++DNL+ G STFMVEM ETASILN +++S V++DEIGRGT Sbjct: 640 VPARSATVGIVDKVFTRVGASDNLSRGESTFMVEMTETASILNNLSSKSLVLMDEIGRGT 699 Query: 743 ATLDGLSIAWATIEYLHETNRCR--GLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 +T DG+SIAWA EYLH + CR L ATH+HEL L++ R N + V + + ++ Sbjct: 700 STYDGVSIAWAITEYLHNQSDCRPKTLFATHYHELNQLAEDFPRIKNFNVAVKEVDNKVV 759 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK--LYHHNQKDMR 851 FL K+ PG + HS+GI V ++AG+P ++ RA +I++ EK + H ++K ++ Sbjct: 760 FLRKLKPGGSAHSFGIHVAQIAGMPQPIVLRASEIMQHLEKDHVAHEHKKRVK 812 >gi|218885459|ref|YP_002434780.1| DNA mismatch repair protein MutS [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756413|gb|ACL07312.1| DNA mismatch repair protein MutS [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 910 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 296/904 (32%), Positives = 460/904 (50%), Gaps = 61/904 (6%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M QY+ IK PD+L+ YRMGDFYE+FFDDA A+R L I LT R + +PMCGVP Sbjct: 1 MFEQYLRIKDDYPDALLLYRMGDFYEMFFDDAETAARELQIALTCRNPNADLRVPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H+ YI +L++ G ++A+C+QIE P EAK LV+R V R++TPGT+ ED L Sbjct: 61 HHSVEGYITQLLEKGFKVALCDQIEDPREAK-----GLVKRAVTRVLTPGTVVEDANLDA 115 Query: 148 TDSNYLMAVARIRTEWA--IAWIDISTGIFK-ISTSNHDRLISDIMRIDPREIIFSEKEL 204 NYL A+ + A AW+D STG + + L + ++ PRE++ +E Sbjct: 116 KGHNYLGALFWDEEKEAGGFAWLDFSTGEWSGLHAKKAADLWQWVRKMQPRELLVTES-- 173 Query: 205 SHAEYKSLFETLGNVAVAQPN-VFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 A+ S V P FD + R+ + G + E + A Sbjct: 174 --AQVPSSMSLTSTQVVRVPGRAPFDLKAATERLLHAQGVRDTGALGLEGKDELVRSCGA 231 Query: 264 I-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR-EQSLLKTIDYS 321 + +Y+ +TQ + + ++ L +D NLEI R L G + +L +D++ Sbjct: 232 LLAYVVQTQKQDIIHLAPFRPLNLGRHLIVDEVTERNLEIFRRLDGRKGPGTLWHVLDHT 291 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T GGRL ER+ P + I ++++ + ++ L D+ R +R+ Sbjct: 292 QTPMGGRLLEERLRHPWREMGPIEETQAAVSWLFERDDTRRDLRAGLDEVYDLERLTTRI 351 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEE----------------LRGAVEKLK 425 + R PKD +R + + + + + + P LR A++ Sbjct: 352 FLNRAAPKDYVALRQSLAALPKVRGVLERTETPHGGYPTDGEARGDGRPPFLRAALKGWD 411 Query: 426 KLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE 485 L + L L D P +GG R G A LDE L + + ++ L + Sbjct: 412 DLSDYFD-LLERALVDSPPHLVTEGGLFRPGFHAELDELLDLTEHGENMLQQLLAEEQAA 470 Query: 486 TKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 + + LK+ N GY+ E++ +++ + + F+ RQT++N RFTT L +LE Sbjct: 471 SGLPRLKLGFNRVFGYYFELSRTASDAVP------EHFVRRQTLANAERFTTPRLKELEE 524 Query: 546 RITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPI 605 ++ +A++ +E + F+ L + E + + ++A D +LA A+ N+ RP+ Sbjct: 525 KLVSASDRRKSLEYKLFQKLRETVSEARPRVLFMADLLAGFDYWQSLAETARRWNWTRPV 584 Query: 606 IDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKST 665 + + ++++GRHP+VE Q S FI ND + + +L L+TGPNM GKST Sbjct: 585 LAQDADILIREGRHPVVEAM---QGSANFIPNDLRMD-----EARRLLLITGPNMAGKST 636 Query: 666 FLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILN 725 LRQ A+I ++AQMGS+VPA A +GI D++FSRVG++DNLA G+STFMVEM+ETA IL Sbjct: 637 VLRQTAIICLLAQMGSFVPAREARLGIADRVFSRVGASDNLAQGQSTFMVEMMETARILR 696 Query: 726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYL--HETNRCRGLLATHFHELTDLSKSLK 783 QA +S VILDEIGRGT+T DGL++AWA +E L R L ATH+HELT L + Sbjct: 697 QAGKRSLVILDEIGRGTSTFDGLALAWAVVEELARRAGGTIRTLFATHYHELTALEGRIP 756 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY 843 HN + + + I+FL +++PG +D SYGI+V +LAG+P V+ RA ++L EK Sbjct: 757 GVHNMNIAIREWGGEIVFLRRLVPGPSDRSYGIEVARLAGVPQPVVQRARELLHELEKAR 816 Query: 844 H---HNQKDMRLYYPEIQTKESKNNLSKNDKL----------FVEKIKCLNLDEMSPLTA 890 + R P + E K L + ++ L+ D ++P+ A Sbjct: 817 DGRGEAPRTARAVLPGLDMPEPKQAAKPRALLAARAEPVAHPLLTTLRDLDTDHLTPMGA 876 Query: 891 LKTL 894 L+ L Sbjct: 877 LQLL 880 >gi|319638503|ref|ZP_07993265.1| DNA mismatch repair protein mutS [Neisseria mucosa C102] gi|317400252|gb|EFV80911.1| DNA mismatch repair protein mutS [Neisseria mucosa C102] Length = 866 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 307/890 (34%), Positives = 466/890 (52%), Gaps = 54/890 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM+QY+ IKS + D LVFYRMGDFYELF DDA+ A++ L ITLT RG+ G I M G Sbjct: 7 SPMMQQYLAIKSQHADKLVFYRMGDFYELFLDDAVEAAKLLDITLTTRGQMDGVPIKMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ +L+K+G +A+CEQ+ + K V R VVR+VTPGTLT+ L Sbjct: 67 VPFHAAEQYLARLVKMGKSVAVCEQV-----GEVGAGKGPVERKVVRIVTPGTLTDAAFL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 ++N ++AV + AIAW + +G FK + D+L ++ R+ EI+ E + Sbjct: 122 EDKETNRIVAVNADKKNVAIAWASLQSGEFKTKLTTADKLADELARLQAAEILLPEGKSL 181 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG---SFSQVEKTAAAA 262 +++ + + Q F + +Y+ + FG + AA A Sbjct: 182 PDGFQATSANITRLNSWQ----FAADAGAKLLTEYFGCQDLHGFGLDGKEHEAAVGAAGA 237 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 ++YI+ TQ + + E + +D+A R NLEI +TLSG + +L +D Sbjct: 238 LLNYIRLTQNLMPQHLDGISLETDSQYIGMDAATRRNLEITQTLSGKKSPTLFSILDGCA 297 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G RL A + PL I R +++ +Q LK+ D+ R +R+ Sbjct: 298 THMGSRLLALWLHHPLRSRAHIRARQEAVAALGSQ---YETLQGRLKNIADIERIAARIA 354 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL-PQSL--EKTLSSML 439 +G P+D+A +RD + + I +L E +E LK + P++L +TL + + Sbjct: 355 VGNARPRDLAALRDSLFALSEI-------ELSAEGNSLLETLKAVFPETLPVAETLKAAV 407 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + + +DGG + G A LDE R +++ + L+ + E T + LK++ N Sbjct: 408 MPEPAVWLKDGGVINQGYCAELDELRHIQNHGDEFLLDLEARERELTGLSTLKVEFNRVH 467 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 G++IE++ A D + RQT+ N RF T EL E+++ A AL +E Sbjct: 468 GFYIELSKVQAEQAPAD------YQRRQTLKNAERFITPELKTFEDKVLTAQEQALALEK 521 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 FE L I L A++ A +D+ A A E+ + P + +++GRH Sbjct: 522 RLFEALLKDIQTTLPQLQKAAKAAAALDVLSTFAATAAERGFVCPEFADYPIIHIENGRH 581 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE+ ++ F AN L + +L LLTGPNMGGKST++RQ A IV+MA Sbjct: 582 PVVEQQVRH-----FTANHTRLD-----HKHRLMLLTGPNMGGKSTYMRQVAHIVLMAHT 631 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPA A IG +D++F+R+G++D+LAS RSTFMVEM ETA IL+ AT+QS V++DE+G Sbjct: 632 GSFVPADSAQIGPIDQIFTRIGASDDLASNRSTFMVEMSETAYILHHATDQSLVLMDEVG 691 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGT+T DGL++A A E+L + N+ L ATH+ ELT L ++ N L + + I Sbjct: 692 RGTSTFDGLALAHAIAEHLLQKNKSFSLFATHYFELTRLPEAHATAVNMHLSALEQGQDI 751 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP---- 855 +FLH + PG A SYGI V KLAGLPN + A L E N+ + ++ Sbjct: 752 VFLHHIEPGPASKSYGIAVAKLAGLPNRALKAAQKHLNDLENQAAANRPQLDIFSAMPSE 811 Query: 856 -------EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + Q E +NL N+ E + + D ++P AL LY +K Sbjct: 812 NREDEEGKAQEVEPIDNLQTNE--LAEALAQIQPDNLTPREALDALYRLK 859 >gi|299535290|ref|ZP_07048613.1| DNA mismatch repair protein [Lysinibacillus fusiformis ZC1] gi|298729272|gb|EFI69824.1| DNA mismatch repair protein [Lysinibacillus fusiformis ZC1] Length = 856 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 301/888 (33%), Positives = 489/888 (55%), Gaps = 51/888 (5%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPMM+QY+++K D+ +F+R+GDFYE+FF+DA+ AS+ L ITLT R + I Sbjct: 1 MTTYTPMMQQYLQVKEDYKDAFLFFRLGDFYEMFFEDAINASQILEITLTSRDAGAKERI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A +YI+ L++ G+++AICEQ E P +AK +V+R VV+L+TPGT+ E Sbjct: 61 PMCGVPHHSAKNYIETLVQKGYKVAICEQTEDPKQAK-----GVVKREVVQLITPGTIME 115 Query: 142 DQLLSPTDSNYLMAVARIR-TEWAIAWIDISTGIFKISTSNHD--RLISDIMRIDPREII 198 + L ++++ A ++ T + A++D+STG S+ D L+ + RE+I Sbjct: 116 GKALDGKSNHFIGAAEQLDDTTFGYAYLDLSTGEAVASSIEGDGKALLMQMQAYGIRELI 175 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE-- 256 ++ SL L AV N SI N +D S+ + Sbjct: 176 VTD---------SLQLLLAEHAV---NAGIVLSIE-------VNEMPMDKAASYLEAVPK 216 Query: 257 --KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-S 313 + A ++YI +TQM + I +I++ L IDS+++ NLE+++++ G ++ + Sbjct: 217 PLQIACLRLLAYIDQTQMRSLSHIQAFTFNEIKNYLRIDSSSKRNLELIQSIRGGDQKGT 276 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D ++T GGR + + PL + I RL + ++ + +Q LK D Sbjct: 277 LLWLLDDTVTAMGGRKLKQWLHQPLATRSAIEARLAIVTDLLEEYFVRTELQASLKQVYD 336 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILN-LFLKNDLPEELRGAVEKLKKLPQSLE 432 + R R+ G +D+A +RD +R I L N + + GA +L +E Sbjct: 337 LERLAGRVAFGNVGGRDLAQLRDSLRQVPTIQQQLMGSNKVTLQQLGA--ELDTCS-DVE 393 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 L+ ++D+ P ++G +RDG + LDE R K IA L+ + +T IKNLK Sbjct: 394 ALLAKAITDNPPITIKEGDVIRDGYNERLDELRYAARNGKDWIAQLEQEERVKTGIKNLK 453 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 I +N GY+IE+T S+ L R+ +QT++N R+ T EL + E I NA Sbjct: 454 IGYNRIFGYYIEITKSNIH-----LADLTRYERKQTLANAERYITQELKEKEALILNAEE 508 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 +L +E F + + + + + I+ +D+ ++ A ++++ + +P Sbjct: 509 ESLTLEYNLFVEIRDVLKAYIPRVQALAANISELDVLLSFASVSEKYRFTKPQFHGGRAL 568 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 + +GRHP+VEK L +Q ++ NDC L N+ + L+TGPNM GKST++RQ AL Sbjct: 569 EIIEGRHPVVEKMLNKQM---YVPNDCVLEEQNN-----MMLITGPNMSGKSTYMRQVAL 620 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 IV+MAQMG YVPA A + I D++F+R+G+AD+LA+G+STFMVEM+E+ + AT S Sbjct: 621 IVVMAQMGCYVPAEKAKLPITDQIFTRIGAADDLAAGQSTFMVEMLESQHAITHATKNSL 680 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 ++ DEIGRGT+T DG+S+A + +EY+H+ L +TH+HELT L K L R N + Sbjct: 681 MLFDEIGRGTSTYDGMSLAQSMMEYIHDKIGANTLFSTHYHELTALEKDLPRLQNVHVSA 740 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 ++ N ++FLHKV G AD SYGI V +LA LP +++RA +L+ FE + + Sbjct: 741 TEKNGTVVFLHKVKKGAADKSYGIHVAQLAQLPEEILARARVLLENFEAGKEVVAETQVI 800 Query: 853 YYPEIQTK--ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 IQ +S + ++K++ +N+ SP+ A+ LY ++ Sbjct: 801 AEQPIQMSLFAEDEPISPAETQVLKKLEKVNILGTSPMQAMNILYELQ 848 >gi|302024621|ref|ZP_07249832.1| DNA mismatch repair protein MutS [Streptococcus suis 05HAS68] gi|330833728|ref|YP_004402553.1| DNA mismatch repair protein MutS [Streptococcus suis ST3] gi|329307951|gb|AEB82367.1| DNA mismatch repair protein MutS [Streptococcus suis ST3] Length = 846 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 286/817 (35%), Positives = 462/817 (56%), Gaps = 40/817 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK+ PD+ + +RMGDFYELF++DA+ A++ L ++LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKAQYPDAFLLFRMGDFYELFYEDAVEAAQILELSLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A YI L+++GH++AI EQ+E P +A +V+R VV+++TPGT+T+ + Sbjct: 67 VPYHAAQQYIDTLVELGHKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVTDSSKM 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSEKEL 204 DSNYL+A+ R ++A++++D+STG F + S + L +I + RE++ L Sbjct: 122 G-ADSNYLVALDRQGVQFALSYMDVSTGQFFVTSLDDFTSLCGEIRNLRARELVIG-YAL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E + +F N+ ++ F+ ++E ++ +D S + +EK AA + Sbjct: 180 SEEE-EQVFSNQMNLLLS-----FEDEVTE-------DVQLIDN--SLTDLEKAAAGKLL 224 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT-LSGSREQSLLKTIDYSIT 323 SY+ +TQM + + +I+ L +D A +S+L++L +G + SL +D + T Sbjct: 225 SYLHRTQMRDLSHLQKVVHYEIKDYLQMDYATKSSLDLLENGRTGKKHGSLYWLLDETKT 284 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL I PL D +I R + F+ + + + LK D+ R SR+ Sbjct: 285 AMGMRLLRTWIDRPLIDLKRIENRQAIVQVFLDYFFERSDLVEALKGVYDIERLASRVSF 344 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 G+ PKD+ + + + I N+ + + P L V L +P+ L +SS + + Sbjct: 345 GKTMPKDLLQLSQTLGNIPAIKNILQQINEPA-LGNLVAGLDPIPE-LHALISSAIDPEA 402 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 DG +R G D +LD+ R + + IA ++ K E + I NLKI +N GY+ Sbjct: 403 QGTITDGNIIRTGFDETLDQYRLVIREGAGWIAEIEAKEREASGINNLKIDYNKKDGYYF 462 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 VT+S+ D F + T+ N R+ T EL +E ++ A + + +E E F Sbjct: 463 HVTNSNLG------NVPDHFFRKATLKNSERYGTEELAKIEGQMLEARDKSANLEYEIFM 516 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 + + + L ++ IA ID+ A A++A++Q+ P + + GRH +VE Sbjct: 517 RIRQEVEKYIGRLQKLARTIATIDVLQAFAVVAEQQHLVCPRFTDQRELTIDRGRHAVVE 576 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 K + +Q+ +I N L+ + L+TGPNM GKST++RQ A+IVIMAQMGSYV Sbjct: 577 KVMGKQT---YIPNSIHLNTDT-----HMQLITGPNMSGKSTYMRQLAVIVIMAQMGSYV 628 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA A + I D +F+R+G+AD+L SG+STFMVEM+E + AT++S ++ DE+GRGTA Sbjct: 629 PADQAELPIFDAIFTRIGAADDLVSGQSTFMVEMMEANKAVRLATDRSLILFDELGRGTA 688 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DG+++A + IEY+H+ + L ATH+HELTDLS++L+ N + + + + FLH Sbjct: 689 TYDGMALAQSIIEYIHDKIGAKTLFATHYHELTDLSQTLEHLENVHVSTLEKDGQVTFLH 748 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 K+ G AD SYGI V K+AG+P ++ RA IL+T E Sbjct: 749 KIAQGPADKSYGIHVAKIAGMPEELLQRADRILQTLE 785 >gi|241759880|ref|ZP_04757980.1| DNA mismatch repair protein MutS [Neisseria flavescens SK114] gi|241319888|gb|EER56284.1| DNA mismatch repair protein MutS [Neisseria flavescens SK114] Length = 866 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 310/893 (34%), Positives = 466/893 (52%), Gaps = 60/893 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM+QY+ IKS + D LVFYRMGDFYELF DDA+ A++ L ITLT RG+ G I M G Sbjct: 7 SPMMQQYLAIKSQHADKLVFYRMGDFYELFLDDAVEAAKLLDITLTTRGQMDGVPIKMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ +L+K+G +A+CEQ+ + K V R VVR+VTPGTLT+ L Sbjct: 67 VPFHAAEQYLARLVKMGKSVAVCEQV-----GEVGAGKGPVERKVVRIVTPGTLTDAAFL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 ++N + AV + AIAW + +G FK + D+L ++ R+ EI+ E Sbjct: 122 EDKETNRIAAVNADKKHIAIAWASLQSGEFKTKLTTADKLADELARLQAAEILLPEG--- 178 Query: 206 HAEYKSL---FETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG---SFSQVEKTA 259 KSL F+T + F + +Y+ + FG + A Sbjct: 179 ----KSLPDGFQTTSANITRLNSWQFAADAGAKLLTEYFGCQDLHGFGLDGKEHEAAVGA 234 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A A ++YI+ TQ + + E + +D+A R NLEI +TLSG + +L +D Sbjct: 235 AGALLNYIRLTQNLMPQHLDGISLETDSQYIGMDAATRRNLEITQTLSGKKSPTLFSILD 294 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 T G RL A + PL I R +++ +Q LK+ D+ R + Sbjct: 295 GCATHMGSRLLALWLHHPLRSRAHIRARQEAVAALGSQ---YEALQGRLKNIADIERIAA 351 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL-PQSL--EKTLS 436 R+ +G P+D+A +RD + + + +L E +E LK + P++L +TL Sbjct: 352 RIAVGNARPRDLAALRDSLFALSEV-------ELSAEGSSLLETLKAVFPETLPVAETLK 404 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + + + + +DGG + G A LDE R +++ + L+ + E T + LK++ N Sbjct: 405 AAVMPEPAVWLKDGGVINQGYSAELDELRHIQNHGDEFLLDLEARERERTGLSTLKVEFN 464 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 G++IE++ A D + RQT+ N RF T EL E+++ A AL Sbjct: 465 RVHGFYIELSKVQAEQAPAD------YQRRQTLKNAERFITPELKTFEDKVLTAQEQALA 518 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E FE L I L A++ A +D+ A A E+ + P + +++ Sbjct: 519 LEKRLFEALLKDIQTTLPQLQKAAKAAAALDVLSTFAATAAERGFVCPEFADYPVIHIEN 578 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE+ ++ F AN L + +L LLTGPNMGGKST++RQ A IV+M Sbjct: 579 GRHPVVEQQVRH-----FTANHTRLD-----HKHRLMLLTGPNMGGKSTYMRQVAHIVLM 628 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A GS+VPA+ A IG +D++F+R+G++D+LAS RSTFMVEM ETA IL+ AT+QS V++D Sbjct: 629 AHTGSFVPANSAQIGPIDQIFTRIGASDDLASNRSTFMVEMSETAYILHHATDQSLVLMD 688 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 E+GRGT+T DGL++A A E+L + N+ L ATH+ ELT L ++ N L + Sbjct: 689 EVGRGTSTFDGLALAHAIAEHLLQKNKSFSLFATHYFELTKLPEAHATAANMHLSALEQG 748 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP- 855 + I+FLH + PG A SYGI V KLAGLPN + A L E N+ + ++ Sbjct: 749 QDIVFLHHIEPGPASKSYGIAVAKLAGLPNRALKAAQKHLNDLENQAAANRPQLDIFSAM 808 Query: 856 ----------EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + Q E +NL N+ E + + D ++P AL LY +K Sbjct: 809 PSENGTEEEGKEQEVEPVDNLQNNE--LAEALAQIQPDNLTPREALDALYRLK 859 >gi|209518053|ref|ZP_03266884.1| DNA mismatch repair protein MutS [Burkholderia sp. H160] gi|209501557|gb|EEA01582.1| DNA mismatch repair protein MutS [Burkholderia sp. H160] Length = 895 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 304/908 (33%), Positives = 462/908 (50%), Gaps = 68/908 (7%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 ++ TPMM+QY+ IK+ +P +LVFYRMGDFYELFFDDA A+R L +TLT+RG G Sbjct: 10 DVAQHTPMMQQYLRIKAEHPGTLVFYRMGDFYELFFDDAEKAARLLDLTLTQRGASAGNP 69 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 I M GVP H Y+ KL+K+G +AICEQI P +K V R V+R+VTPGTLT Sbjct: 70 IKMAGVPHHAVEQYLAKLVKLGESVAICEQIGDPAT-----SKGPVERKVMRVVTPGTLT 124 Query: 141 EDQLLSPTDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDP 194 + LLS YL+A+ + T +AW+++++G +++ D++ + + RI P Sbjct: 125 DAALLSDKSDVYLLALCVAHNRRGVATSVGLAWLNLASGALRLAEVAPDQVAAALERIRP 184 Query: 195 REIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS- 253 EI+ ++ A + V P FD + R+ D + ++D FG+ S Sbjct: 185 AEILVADATADSASWTPPVNASALKRV--PAWHFDITSGTKRLCDQLEVASLDGFGAHSL 242 Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA A + Y TQ + + E + +D A R NLE+ TL G+ + Sbjct: 243 GCACGAAGALLLYAASTQGQQLRHVRSLKVEYESEYIGLDPATRRNLELTETLRGTESPT 302 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP--ILINPIQKILKSS 371 L +D T G RL + P DS R +I + P ++ ++ L+ Sbjct: 303 LCSLLDTCCTTMGSRLLRHWLHHPPRDSAVAQARQQAIGALLDAPPGADLDTLRSALRQI 362 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRD------GIRSGINILNLFLKNDLPEELRGAVEKLK 425 D+ R RL + P+D++ +RD +R+ + + D + A+E Sbjct: 363 SDIERITGRLALLSARPRDLSSLRDTFIALPALRAQLTAVAS--NADSLARIDAALEP-- 418 Query: 426 KLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE 485 PQ+ + L ++ + RDGG + D LDE R + + + + L+ + Sbjct: 419 --PQACVELLIRAVAQEPAAMVRDGGVIARAYDTELDELRDISENCGQFLIDLETRERAR 476 Query: 486 TKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 T I NL++++N G++IEVT + D + RQT+ N R+ T EL E+ Sbjct: 477 TGINNLRVEYNKVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTFED 530 Query: 546 RITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPI 605 + +A AL E ++ L +++ + +A +D+ A A+ ++ P Sbjct: 531 KALSAQERALARERALYDALLQSLLPFIPDCQRVALALAELDLLAAFGERARALDWVAPT 590 Query: 606 IDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKST 665 ++ GRHP+VE ++Q FIANDC L+ KL L+TGPNMGGKST Sbjct: 591 FSADAGIDIEQGRHPVVEAQVEQ-----FIANDCALA-----TERKLLLITGPNMGGKST 640 Query: 666 FLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILN 725 F+RQ AL ++A +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+ILN Sbjct: 641 FMRQTALNALLAYVGSYVPARRAAFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILN 700 Query: 726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRF 785 AT QS V++DEIGRGT+T DGL++AWA +L N C L ATH+ ELT L Sbjct: 701 DATPQSLVLMDEIGRGTSTFDGLALAWAIARHLLAHNGCYTLFATHYFELTQLPAEFPHA 760 Query: 786 HNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH 845 N L + GI+FLH V G A+ SYG+QV +LAG+PN VI A + L H Sbjct: 761 ANVHLSAVEHGHGIVFLHAVNEGPANQSYGLQVAQLAGVPNAVIRAAR------KHLAHL 814 Query: 846 NQKDMRLYYPEIQTKESKNNL------------------SKNDKLFVEKIKCLNLDEMSP 887 Q+ P++ + + + S + VE+++ ++ +++ P Sbjct: 815 EQQSAAQPAPQLDLFATPSPMLVEDADDDSDADISASQASPAMQTLVERLRGIDPNDLRP 874 Query: 888 LTALKTLY 895 AL LY Sbjct: 875 REALDLLY 882 >gi|126663148|ref|ZP_01734146.1| DNA mismatch repair protein [Flavobacteria bacterium BAL38] gi|126624806|gb|EAZ95496.1| DNA mismatch repair protein [Flavobacteria bacterium BAL38] Length = 893 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 301/885 (34%), Positives = 495/885 (55%), Gaps = 33/885 (3%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M+QY EIK+ PD+ + +R+GDFYE F +DA+ A+ LGITLTKRG + + G Sbjct: 36 TPLMKQYNEIKNKYPDACLLFRVGDFYETFGEDAVRAAGILGITLTKRGAGSETETALAG 95 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H+ N Y+ KL+K G R+AIC+Q+E P + K++V+R V LVTPG D++L Sbjct: 96 FPHHSINTYLPKLVKAGLRVAICDQLEDP-----KMTKTIVKRGVTELVTPGVSMNDEVL 150 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 +N+L +V + +A++D+STG F +S N + + + P EI+ ++ Sbjct: 151 QSKSNNFLASVYFGKKSLGVAFLDVSTGEFLVSQGNEEYIDKLLQNFRPSEILIPKQ--F 208 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI- 264 ++ S++ + + V+ + ES + ++ ++ FG E A+ AI Sbjct: 209 KNQFNSVYGDDFHTFFLEDWVYKEDYALES-LTKHFQTNSLKGFGVEELTEGLIASGAIL 267 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 Y+ +TQ I +R + +++D NLE+ + + +LL ID +++ Sbjct: 268 YYLSETQHNKIQHITNIQRIAEDAYVWMDKFTIRNLELYHSYN-PNAVTLLDVIDKTLSA 326 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 G RL +A PL D +KI +R + I++ NP ++ IQ +K D+ R +S++ G Sbjct: 327 MGARLLKRWLALPLKDISKIRSRHEVISYLKTNPEVLQQIQYQIKQISDLERLISKVATG 386 Query: 385 RGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLP 444 + P+++ ++D + + I I L L ++ E LR + L + L + + + + +D P Sbjct: 387 KISPREVNFLKDSLDAIIPIKTLALSSE-NEALRVIGDSLHAC-ELLREKIKTTIQEDAP 444 Query: 445 TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIE 504 G + G + LDE R++ K + L+ + + + I +LK+ NN GY+IE Sbjct: 445 VSVNKGNAIAVGVHSELDELRAISSTGKGYLDELEQRESIASGIPSLKVSFNNVFGYYIE 504 Query: 505 VTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEI 564 V ++ + + +I +QT+ N R+ T EL + E++I A +E + FE Sbjct: 505 VRNTHKDKVPAE------WIRKQTLVNAERYITEELKEYESKILGAEEKIHQLETQLFEQ 558 Query: 565 LSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEK 624 L N I + + + +IA +D + LA + Y P +D S + + +GRHP++EK Sbjct: 559 LVNWIATYIKHVQLNANLIAQLDCLTSFTQLAIDNKYVCPDLDESFDLEINEGRHPVIEK 618 Query: 625 TLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684 L P+I+ND L D+ + ++ ++TGPNM GKS LRQ ALIV+MAQMGS+VP Sbjct: 619 QLP--VGVPYISNDVCL----DRETQQIIMITGPNMSGKSAILRQTALIVLMAQMGSFVP 672 Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744 A +GIVDK+F+RVG++DN++ G STFMVEM ETASILN + +S V+LDEIGRGT+T Sbjct: 673 AESVRMGIVDKIFTRVGASDNISMGESTFMVEMNETASILNNISERSLVLLDEIGRGTST 732 Query: 745 LDGLSIAWATIEYLHE-TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 DG+SIAWA EYLHE N+ + L ATH+HEL ++ + R N + V + + ++F+ Sbjct: 733 YDGISIAWAISEYLHEHPNKPKTLFATHYHELNEMEVTFDRIQNFNVSVKELKDTVLFIR 792 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ-KDMRLYYPEIQTKES 862 K++ G + HS+GI V K+AG+P VI +A +LK EK + + ++ E+Q S Sbjct: 793 KLVKGGSAHSFGIHVAKMAGMPQIVIQKAQKLLKQLEKRHSSEELSGIKSVNDELQL--S 850 Query: 863 KNNLSKNDKLF---VEKIKCLNLDEMSPLTALKTLYAVKAWTLEK 904 NL +D L E+I ++++ ++P+ AL L +K ++K Sbjct: 851 FFNL--DDPLLEDIKEEIMNIDINTLTPVEALMKLNEIKRMLVKK 893 >gi|309805987|ref|ZP_07700013.1| DNA mismatch repair protein MutS [Lactobacillus iners LactinV 03V1-b] gi|308167590|gb|EFO69743.1| DNA mismatch repair protein MutS [Lactobacillus iners LactinV 03V1-b] Length = 854 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 284/872 (32%), Positives = 477/872 (54%), Gaps = 41/872 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY +IK PD+ +FYR+GDFYELF DDA+ ++ L +TLT R K IPM G Sbjct: 6 TPMMEQYYKIKQQYPDAFLFYRVGDFYELFEDDAVKGAKLLELTLTHRSNKSAKPIPMAG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP + YI L+ G+++AICEQ+E P +A+ +V+R +++LVTPGT+ D Sbjct: 66 VPHLAVDSYINTLVDKGYKVAICEQLEDPKKAQ-----GMVKRGIIQLVTPGTVINDNPD 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 +SNYL ++ W + + D+STG + ++ + ++++++ + RE+++ E Sbjct: 121 QAKESNYLTSLCSNSQGWGLTYCDLSTGESYATHLTSWEMIVNELLSLQTRELVYGETLT 180 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S K +F + ++QP +++ + + T +Q+E A + Sbjct: 181 SD---KQIFLKKAGITLSQP----------VKLSKEHAEVSYVTQQLHNQLEIAATKQLL 227 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSIT 323 +Y+ TQ + + + + L + ++NLE++++ +G + SL +D + T Sbjct: 228 AYLLATQKRSLAHLQVTQSYEPNQYLQMSHIVQTNLELIKSAKTGKKMGSLFWLLDKTST 287 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 GGRL I PL ++I +R + + I K L+ D+ R R+ + Sbjct: 288 AMGGRLLKSWIERPLISLSEIKSRQLVVTALFDDYFSREKIIKQLQGVYDLERLTGRVAL 347 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFL--KNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 G +++ + D + I+N+ KN++ ++ LK + + KT+ + Sbjct: 348 GSANARELLQLADSLAVVPEIINILANSKNEVLNNFAQKIDPLKGIHDLIVKTIV----E 403 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + P ++GG ++ G + LD R K+ +A + E+T I NL++ +N GY Sbjct: 404 NPPLSTKEGGIIKSGVSSQLDRYRDAMMNGKKWLADMANSEREKTGINNLRVGYNKVFGY 463 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IEVT+S KD DR++ +QT++N R+ T+EL + E I A + + +E E Sbjct: 464 YIEVTNSY-----KDKVPLDRYMRKQTLTNAERYITVELKEHEALILEAQDYSTDLEYEL 518 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY-CRPIIDNSTNFIVKDGRHP 620 F L I + +L ++ ++ +D+ ++L+++ NY C +S+ + +GRHP Sbjct: 519 FTNLREDIKKYIPALQKLAKQLSSLDVLATFSLLSEQNNYVCPQFSQDSSAINIVNGRHP 578 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + S + +I ND + ++L+TGPNM GKST++RQ ALI+IMAQ+G Sbjct: 579 VVEKVM---SDEEYIPNDVKMD-----EQTNIFLITGPNMSGKSTYMRQLALIIIMAQIG 630 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 ++PA A + I DK+F+R+G+ D+L SG+STFMVEM E LN AT +S ++ DEIGR Sbjct: 631 CFIPADSAVLPIFDKIFTRIGAGDDLISGKSTFMVEMSEANIALNNATKRSLILFDEIGR 690 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A I+YLH+ + L ATH+HELTDL + L N + + N +I Sbjct: 691 GTATYDGMALAGAIIKYLHDKVGAKTLFATHYHELTDLDQELAHLKNIHVGATQENGHLI 750 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 FLHK++PG AD SYGI V +LAGLP V+ A +LK EK + NQ ++ Sbjct: 751 FLHKILPGAADQSYGIHVAQLAGLPTKVLREATHMLKQLEK-HSDNQAAFSDEQLDLFGS 809 Query: 861 ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALK 892 ++ +S ++ + +IK L L+E++PL ++ Sbjct: 810 SDQHKMSDEEQDVLTQIKNLYLNEITPLQVMQ 841 >gi|319936493|ref|ZP_08010909.1| DNA mismatch repair protein mutS [Coprobacillus sp. 29_1] gi|319808608|gb|EFW05160.1| DNA mismatch repair protein mutS [Coprobacillus sp. 29_1] Length = 830 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 296/881 (33%), Positives = 478/881 (54%), Gaps = 67/881 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM QY++IK N D++V +R+GDFYE+FFDDA++AS+ L + LT + + + +PMCG Sbjct: 6 SPMMMQYLKIKEDNKDAIVMFRLGDFYEMFFDDAVIASKALELALTGKNAGVKERVPMCG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+ + YIQKLI +GH++AI EQ+ P G K +V R VV++VTPGT+ D L Sbjct: 66 VPFHSVSGYIQKLIDLGHKVAIVEQLTDP------GKKGIVERGVVQIVTPGTIM-DGSL 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 + ++Y+ A+ + +A+ DISTG F + + ID +E + Sbjct: 119 NEKRNHYIGALGVFDFNYTLAYCDISTGEFYV------------VNIDKQEHLL------ 160 Query: 206 HAEYKSLFETLG-NVAVAQPNVFFDHSISESRIADYYNITTVDTFGS-FSQV----EKTA 259 K+ ++LG V ++ FD I+ YYN D++ F + E Sbjct: 161 ----KNQIDSLGLRELVVDEDIHFDQVF----ISQYYNDKFNDSYKKVFENIKDLKEIKV 212 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 + ++Y+ +TQ I + + +++DS + +LE+++ +L +D Sbjct: 213 CSILLNYMLETQKRELGHIQVIQEVKTEDFIYMDSYTKKSLELVKNADNESYGTLQWLLD 272 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + + GGRL + I PL + KI R+D I I N I I+ I+ D+ + Sbjct: 273 DTKSAMGGRLLRQWIERPLINQEKIERRMDIIEILIDNFIERETIKDIINDIYDIEKLAG 332 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G +D+ I ++ + + L D + E+L L + + + Sbjct: 333 RIAFGNVNARDLKWIAASLKVIPELKHQLLSLD-NQYTHSLAEQLLDLTH-ITDLIDQAI 390 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 D+ P ++GG ++DG + LDE R +R+ K+ ++ + K E T IK LKI +N Sbjct: 391 VDNPPLTIKEGGLIKDGYNEELDELRYIRENGKQWLSEFEQKERERTGIKGLKIGYNRVF 450 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IEVT S ++K + E + +Q++SN RF T EL ++E +I +A + + +E Sbjct: 451 GYYIEVTKSYLPMIKDEFE----YTRKQSISNAERFVTPELKEMEAKILSAHDKMVALEY 506 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F + I + S+ + + V+A +D+ +LA A Y RP ++ + +GRH Sbjct: 507 EIFVQMREYIKKDVHSIQDVASVVAQVDVYQSLASKASHNGYVRPTFNDQHIVDITNGRH 566 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 ++E+ + +Q+ ++ ND + +N + L+TGPNMGGKST++RQ AL VIMAQ+ Sbjct: 567 GVIEQVISRQN---YVPNDLHI-----ENDAPILLITGPNMGGKSTYMRQIALCVIMAQI 618 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VP +A++ + D++F+R+G++D+L SG+STFMVEM+E + L A+ S +I DEIG Sbjct: 619 GSFVPCEHANLPVFDQIFTRIGASDDLISGQSTFMVEMLEANNALRYASQDSLIIFDEIG 678 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG++IA A IEY+ + RC L +TH+HELT + + K N S + I Sbjct: 679 RGTATFDGMAIAQAMIEYIATSIRCVTLFSTHYHELTMMDEKFK-IQNVHASASVEGDHI 737 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 +FL+K+ PG + SYGI V +LA LP+ VI+RA ILK+ E + P I Sbjct: 738 VFLYKIKPGRSHRSYGINVAQLAKLPDEVIARAKIILKSLEDNNIETVISETVEQPVIVQ 797 Query: 860 KES--KNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 KES + LS+ D + +SP+ AL TL +K Sbjct: 798 KESEVEKTLSRIDPM-----------ALSPIDALSTLIELK 827 >gi|300769726|ref|ZP_07079609.1| DNA mismatch repair protein MutS [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308181084|ref|YP_003925212.1| DNA mismatch repair protein MutS [Lactobacillus plantarum subsp. plantarum ST-III] gi|300492769|gb|EFK27954.1| DNA mismatch repair protein MutS [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046575|gb|ADN99118.1| DNA mismatch repair protein MutS [Lactobacillus plantarum subsp. plantarum ST-III] Length = 896 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 282/817 (34%), Positives = 458/817 (56%), Gaps = 36/817 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY +K+ PD+ +FYR+GDFYE+FFDDA+ ++ L +TLT R IPMCG Sbjct: 8 TPMMRQYFAVKNQYPDAFLFYRLGDFYEMFFDDAIKGAQLLELTLTTRNHSAENPIPMCG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP +YI L+ G+++AICEQ+E P AK +V+R V++LVTPGT E Sbjct: 68 VPHRAVQNYIDILVDKGYKVAICEQMEDPKLAK-----GMVKREVIQLVTPGTTLERGAE 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204 +NYL A+ + ++ A+ D+STG K S + +D LI+++ + +EI+ + Sbjct: 123 QAKTNNYLTALIQRDQQYGFAYADLSTGELKTSVLTTNDTLINELTSLQTKEIVVDDSVA 182 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S + + +TLG + Q NV ++ ++ TVD +E+ + Sbjct: 183 S--DLRDQIKTLGILISEQNNV-----TPQAELSYLTQDLTVD-------LEQQVVERLL 228 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSIT 323 YI TQ + + + L +D ++ NLE+++++ +G ++ +LL +D + T Sbjct: 229 MYITVTQKRSLAHLQKAIAYEPSYFLKLDHNSKYNLELMKSIRTGKKQGTLLWLLDETKT 288 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 GGRL + I PL I TR + + + + + +Q+ L D+ R R+ Sbjct: 289 AMGGRLLKQWIDRPLIVKADIETRQNKVATLLDHYFERSNLQEELTKVYDLERLAGRVAF 348 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 G +D+ ++ +R I + + D + V +L + + + + + + +D Sbjct: 349 GSVNGRDLVQLKTSLRQIPKIRYILSELD-TQVFNDEVNQLDPV-EDVADLIDAAIVEDA 406 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P DGG ++DG + LD+ R + K+ IA L+ + T IKNLKI N GY+I Sbjct: 407 PLSVTDGGVIKDGYNEQLDQYRDAMNNGKKWIAELEAQERATTGIKNLKIGFNRVFGYYI 466 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EVT ++ + L KDR+ +QT++N RF+T EL E+ I A + + +E + F Sbjct: 467 EVTKANLAQL-----PKDRYERKQTLTNAERFSTPELKSHESLILEAESHSTDLEYQLFT 521 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 + + + + L ++ +A ID+ + A+++++ ++ RP + S + + DGRHP+VE Sbjct: 522 KVRETVKKAIQRLQTLAKAVAAIDVLQSFAVVSEDYHFVRPKLTKSHDLKIVDGRHPVVE 581 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 K + QS ++ N+ +S P++ + L+TGPNM GKST++RQ AL VIMAQ+G +V Sbjct: 582 KVMGNQS---YVPNNVTMS-PDET----VLLITGPNMSGKSTYMRQLALTVIMAQIGCFV 633 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA A + I D++F+R+G+ D+L SG+STFMVEM E + L AT S V+ DEIGRGTA Sbjct: 634 PAKSAQLPIFDQIFTRIGATDDLISGQSTFMVEMQEANNALQHATANSLVLFDEIGRGTA 693 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DG+++A A IE++H + L +TH+HELT L + L N + ++ + ++FLH Sbjct: 694 TYDGMALAQAIIEFVHNHIHAKTLFSTHYHELTALDQELSGLRNVHVGATEQDGELVFLH 753 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 KV PG AD SYG+ V KLAG+P +++ RA IL + E Sbjct: 754 KVEPGAADKSYGVHVAKLAGMPTSLLERANKILTSLE 790 >gi|254557089|ref|YP_003063506.1| DNA mismatch repair protein [Lactobacillus plantarum JDM1] gi|254046016|gb|ACT62809.1| DNA mismatch repair protein [Lactobacillus plantarum JDM1] Length = 896 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 282/817 (34%), Positives = 458/817 (56%), Gaps = 36/817 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY +K+ PD+ +FYR+GDFYE+FFDDA+ ++ L +TLT R IPMCG Sbjct: 8 TPMMRQYFAVKNQYPDAFLFYRLGDFYEMFFDDAIKGAQLLELTLTTRNHSAENPIPMCG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP +YI L+ G+++AICEQ+E P AK +V+R V++LVTPGT E Sbjct: 68 VPHRAVQNYIDILVDKGYKVAICEQMEDPKLAK-----GMVKREVIQLVTPGTTLERGAE 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204 +NYL A+ + ++ A+ D+STG K S + +D LI+++ + +EI+ + Sbjct: 123 QAKTNNYLTALIQRDQQYGFAYADLSTGELKTSVLTTNDTLINELTSLQTKEIVVDDSVA 182 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S + + +TLG + Q NV ++ ++ TVD +E+ + Sbjct: 183 S--DLRDQIKTLGILISEQNNV-----TPQAELSYLTQDLTVD-------LEQQVVERLL 228 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSIT 323 YI TQ + + + L +D ++ NLE+++++ +G ++ +LL +D + T Sbjct: 229 MYITVTQKRSLAHLQKAIAYEPSYFLKLDHNSKYNLELMKSIRTGKKQGTLLWLLDETKT 288 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 GGRL + I PL I TR + + + + + +Q+ L D+ R R+ Sbjct: 289 AMGGRLLKQWIDRPLIVKADIETRQNKVATLLDHYFERSNLQEELTKVYDLERLAGRVAF 348 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 G +D+ ++ +R I + + D + V +L + + + + + + +D Sbjct: 349 GSVNGRDLVQLKTSLRQIPKIRYILSELD-TQVFNDEVNQLDPV-EDVADLIDAAIVEDA 406 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P DGG ++DG + LD+ R + K+ IA L+ + T IKNLKI N GY+I Sbjct: 407 PLSVTDGGVIKDGYNEQLDQYRDAMNNGKKWIAELEAQERATTGIKNLKIGFNRVFGYYI 466 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EVT ++ + L KDR+ +QT++N RF+T EL E+ I A + + +E + F Sbjct: 467 EVTKANLAQL-----PKDRYERKQTLTNAERFSTPELKSHESLILEAESHSTDLEYQLFT 521 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 + + + + L ++ +A ID+ + A+++++ ++ RP + S + + DGRHP+VE Sbjct: 522 KVRETVKKAIQRLQTLAKAVAAIDVLQSFAVVSEDYHFVRPKLTKSHDLKIVDGRHPVVE 581 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 K + QS ++ N+ +S P++ + L+TGPNM GKST++RQ AL VIMAQ+G +V Sbjct: 582 KVMGNQS---YVPNNVTMS-PDET----VLLITGPNMSGKSTYMRQLALTVIMAQIGCFV 633 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA A + I D++F+R+G+ D+L SG+STFMVEM E + L AT S V+ DEIGRGTA Sbjct: 634 PAKSAQLPIFDQIFTRIGATDDLISGQSTFMVEMQEANNALQHATVNSLVLFDEIGRGTA 693 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DG+++A A IE++H + L +TH+HELT L + L N + ++ + ++FLH Sbjct: 694 TYDGMALAQAIIEFVHNHIHAKTLFSTHYHELTALDQELSGLRNVHVGATEQDGELVFLH 753 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 KV PG AD SYG+ V KLAG+P +++ RA IL + E Sbjct: 754 KVEPGAADKSYGVHVAKLAGMPTSLLERANKILTSLE 790 >gi|124026818|ref|YP_001015933.1| DNA mismatch repair protein [Prochlorococcus marinus str. NATL1A] gi|189083172|sp|A2C5A9|MUTS_PROM1 RecName: Full=DNA mismatch repair protein mutS gi|123961886|gb|ABM76669.1| putative DNA mismatch repair protein [Prochlorococcus marinus str. NATL1A] Length = 926 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 303/851 (35%), Positives = 476/851 (55%), Gaps = 65/851 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TP ++ Y+++K NPD ++ YR+GDF+E FF+DA+ S+ L ITLT + GK +GK +PM Sbjct: 90 TPALKHYVQLKIENPDRVLLYRLGDFFECFFEDAITLSQLLEITLTSKEGGKKIGK-VPM 148 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G+P H ++ Y +LIK G IAIC+Q+E+ A +GNK L++R + RL+TPGT+ E+ Sbjct: 149 AGIPHHASDRYCTELIKKGLSIAICDQLEA---APSKGNK-LIKRGITRLITPGTIIEEG 204 Query: 144 LLSPTDSNYLMAVARIR------TEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPRE 196 +LS +N+L +V W++A +D+STG F + + L +++++ E Sbjct: 205 MLSAKQNNWLASVLLESDSNSDFVNWSLAKLDVSTGEFLVQEGKETNNLRQELIKLKAAE 264 Query: 197 IIFSEKELSHAE-YKSLFETLGNVAVAQPN-VFFDHSISESRIADYYNITTVDTFGSFSQ 254 +I K +S+ YK L E + + N F +++ I ++Y + +D G + Sbjct: 265 VISESKSISNQNWYKGLIE------ITEFNQTSFSRLEAKTTIENHYFLNNIDGLGIHPE 318 Query: 255 -VEKTAAAAAISYIKKTQMVNKPTIG--------------YPEREDIQSTLFIDSAARSN 299 + I+Y+ KT P IG +P+ + Q+ L ID+ R N Sbjct: 319 SLSIRTIGGLIAYLNKTH----PNIGNNLKNEVKTNICIDFPQIKHNQAGLIIDNQTRRN 374 Query: 300 LEILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP 358 LEI T +G + SLL ID ++T GGR + PLT+ I +R I +++ Sbjct: 375 LEITSTQKNGQFQGSLLWAIDKTLTAMGGRCIRRWLEEPLTEIYSIQSRQKIIGLLVESS 434 Query: 359 ILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELR 418 L I+KIL++ D+ R R + +D+ I +GI + ++ +L + + EE + Sbjct: 435 SLRKNIRKILRAMGDLERLSGRAGAQQAGARDLIAIAEGINR-LPLIKKYLNDPIFEETK 493 Query: 419 --GAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIA 476 ++ L + L +++ + D+ P +GG + DG + LD R+ D + Sbjct: 494 YFESIINLDRDLIELASKINNEIIDNPPLSLTEGGLIFDGVNPILDGLRNQLDDHNSWLK 553 Query: 477 SLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFT 536 S +++ + + I NLK++++ + GYF+ V+ + K + D +I RQT++N RF Sbjct: 554 SQEIEERKNSNINNLKLQYHRSFGYFLAVSKA------KSINVPDHWIRRQTLTNEERFV 607 Query: 537 TLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILA 596 T EL + E +I +E + F L + +S+ + A++ I+ +D+ LA LA Sbjct: 608 TPELKEREGKIFQLRARISQLEYDLFCKLRILVGNKSDIIRKAAKAISCLDVLSGLAELA 667 Query: 597 KEQNYCRP-IIDN-----STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSG 650 NY +P IIDN + + DGRHP+VE+ L K F+ ND +L D Sbjct: 668 ATNNYIQPKIIDNKDSTKTRRLSIVDGRHPVVEQIL---VDKFFVPNDIELGSKTD---- 720 Query: 651 KLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGR 710 L +L+GPN GKS +LRQ L+ IMAQ+GS++PA A+IGI D+LF+RVG+ D+LASG+ Sbjct: 721 -LIILSGPNASGKSCYLRQVGLLQIMAQIGSWIPAKSANIGIADQLFTRVGAVDDLASGQ 779 Query: 711 STFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLAT 770 STFMVEMIETA ILN AT S V+LDEIGRGT+T DGLSIAW+ E+L + + R + AT Sbjct: 780 STFMVEMIETAFILNNATENSLVLLDEIGRGTSTFDGLSIAWSVSEFLAKKIKSRSIFAT 839 Query: 771 HFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVIS 830 H+HEL +S+ ++ N + V N + FLHKV G A+ SYGI+ +LAG+P V++ Sbjct: 840 HYHELNQISEYIENVENYKVVVEYKNHSLSFLHKVEKGGANKSYGIEAARLAGVPPDVVN 899 Query: 831 RAYDILKTFEK 841 A ILK EK Sbjct: 900 NARLILKNLEK 910 >gi|325567292|ref|ZP_08143959.1| DNA mismatch repair protein HexA [Enterococcus casseliflavus ATCC 12755] gi|325158725|gb|EGC70871.1| DNA mismatch repair protein HexA [Enterococcus casseliflavus ATCC 12755] Length = 853 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 285/876 (32%), Positives = 481/876 (54%), Gaps = 37/876 (4%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM QY+ IK+ D+ +FYR+GDFYELF +DA+ A++ L +TLT R K+ + IPMC Sbjct: 10 NTPMMEQYLSIKAQYQDAFLFYRLGDFYELFNEDAVKAAQILELTLTSRNKNAEEPIPMC 69 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H A++YI+ LI+ G+++AICEQ+E P + K +V+R VV+L+TPGT+ + + Sbjct: 70 GVPYHAASNYIETLIEQGYKVAICEQVEDP-----KTTKGMVKREVVQLITPGTVMDSKG 124 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 LS ++N+L AV + + A++D+STG K + + + ++++ + +E++ + Sbjct: 125 LSAKENNFLTAVLQQGERFGFAYVDLSTGELKAAQLEDEEAVVNEAAALQTKEVVLCSE- 183 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + E+L + + NV F + A++ +T + G +EK Sbjct: 184 --------IPESLQTMLTNRLNVVFSKQETLEENAEFQFLTEPLSQG----LEKVVTGKL 231 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 +SY+ TQ + I L +D ++ NLE+ +++ +G ++ +LL +D + Sbjct: 232 LSYLAITQKRSLAHIQQAVEYQPDHALKMDHYSKFNLELTQSIRTGKKQGTLLWLLDETK 291 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGRL + + PL KI R + + + + +Q+ L D+ R + R+ Sbjct: 292 TAMGGRLLKQWLDRPLIQPKKITARQEMVQSLLDSFFERADLQEALTKVYDMERLVGRVA 351 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 G +D+ ++ + + ++ L+ E + +L L L + + + +D Sbjct: 352 FGNVNGRDLLQLKSSLEQ-VPLIAQLLQGINRGEWNDLLLELTPL-DDLVALIEAAIDED 409 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P +G ++DG LDE R+ K+ +A L+ + T +KNLK+ N GY+ Sbjct: 410 APLQITEGNIIKDGFHQQLDEYRTAMRNGKQWLAELEANERQATGVKNLKVGFNRVFGYY 469 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IE+T ++ L R+ +QT++N RF + EL LE I A ++ +E F Sbjct: 470 IEITKANLVNL-----DTSRYERKQTLANAERFISPELKKLETLILEAEEKSVDLEYRLF 524 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 + + + L ++ ++ +D+ + A +++ Y RP + + DGRHP+V Sbjct: 525 LDVREEVKKSITRLQKLAKAVSAVDVLQSFATVSERYQYVRPTVAKKRAVSIIDGRHPVV 584 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 EK L Q +I N S D+ + ++ L+TGPNM GKST++RQ AL+VIMAQ+G + Sbjct: 585 EKVLGHQE---YIPN----SIVMDEET-EILLITGPNMSGKSTYMRQFALLVIMAQIGCF 636 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA A + I D++F+R+G++D+L +G+STFMVEM+E L AT S ++ DE+GRGT Sbjct: 637 VPAQSAEMPIFDRIFTRIGASDDLIAGQSTFMVEMMEANQALRHATPNSLILFDELGRGT 696 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFL 802 AT DG+++A A IEY+H+ + L +TH+HELT L + L N + + ++FL Sbjct: 697 ATYDGMALAQAIIEYIHKEVHAKTLFSTHYHELTVLDEELAHLRNVHVGAVEKEGEVVFL 756 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKES 862 HK++ G AD SYGI V K+AGLP+ ++ RA ILK E+ H + E Q Sbjct: 757 HKMMEGPADKSYGIHVAKIAGLPSALLQRAATILKALEE--HEPTVQPKPVVEESQQLSL 814 Query: 863 KNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + +S + ++++K LNL EM+P+ AL TLY ++ Sbjct: 815 FSEVSTEEIGVIDQLKKLNLLEMTPMDALNTLYELQ 850 >gi|184154989|ref|YP_001843329.1| DNA mismatch repair protein MutS [Lactobacillus fermentum IFO 3956] gi|238692955|sp|B2GB17|MUTS_LACF3 RecName: Full=DNA mismatch repair protein mutS gi|183226333|dbj|BAG26849.1| DNA mismatch repair protein MutS [Lactobacillus fermentum IFO 3956] Length = 880 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 286/822 (34%), Positives = 455/822 (55%), Gaps = 46/822 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY +K PD+ +FYR+GDFYE+F +DA+ ++ L +TLT R K IPMCG Sbjct: 6 TPMMEQYQRVKDQYPDAFLFYRLGDFYEMFNEDAVKGAQLLELTLTSRSKSKDNSIPMCG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP ++Y+ LI G+++AICEQ+E P + K +V+R V RLVTPGT + Sbjct: 66 VPHRAVDNYVDILIDKGYKVAICEQMEDP-----KTTKGMVKREVTRLVTPGTTMDLAGD 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKEL 204 + +NYL A+ + + + +A+ D+STG K++ SN I++++ + RE++ +E E+ Sbjct: 121 AARQNNYLTALKQEQGGYNLAYADLSTGELKVTKVSNEAAAINELVNLQTREVV-TEPEV 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S SL + L + + ++++ +A Y + D ++ A + Sbjct: 180 S----ASLLDQLTKRNILRSTQ--GQVVNQAEVA-YLSQDLTDAG------QRDVVALLV 226 Query: 265 SYIKKTQMVNKPTIGYPERE---DIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 SY+ TQ K ++ + +R + S + ID ++ NLE+ L SG R+ +L +D Sbjct: 227 SYLLTTQ---KRSLAHLQRAVAYQLSSFMKIDHRSKVNLELTTNLRSGKRQGTLAWLLDE 283 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G RL + + PL D KI R D + + + +Q+ L D+ R R Sbjct: 284 TKTAMGSRLLKQWLDRPLLDQAKIERRYDRVQELLDHYFERQNLQEELIKVYDLERLAGR 343 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKTLSSM 438 + G +D+ ++ + I + D+P ++L A++ L+ + +++ ++ Sbjct: 344 VAYGSVNGRDLIQLKTSLEQVPKIKYILQTLDVPAFDDLEQALDPLEDVAGLIDRAIAP- 402 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + P DGG +RDG + LDE R K+ IA LQ + T I NLKI +N+ Sbjct: 403 ---EPPISVTDGGVIRDGYNHQLDEYRGAMQNGKQWIADLQEQERRATGINNLKIGYNHV 459 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IEVT ++ L DR+ +QT+ N RF T EL + E+ I A + + +E Sbjct: 460 FGYYIEVTKANIDKL-----PADRYERKQTLVNAERFATPELKEKESLILGAQDKSTALE 514 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 E F + A+ EQ + L + +A +D+ A A +A++ ++ RP +++ ++DGR Sbjct: 515 YELFVKVREAVKEQIDRLQKLAANLAALDVIQAFAKVAEDYHFVRPSLNHDHQLQIEDGR 574 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VEK + Q ++ ND + + L+TGPNM GKST++RQ AL +MAQ Sbjct: 575 HPVVEKFMGHQE---YVPNDVLMG-----GDTSILLITGPNMSGKSTYMRQLALTAVMAQ 626 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 MG +VPA A + I D++F+R+G+AD+L SG STFMVEM+E + L AT S ++ DEI Sbjct: 627 MGCFVPAKRAQLPIFDQIFTRIGAADDLVSGESTFMVEMMEANNALQNATADSLILFDEI 686 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGTAT DG+++A A IE++H + L +TH+HELT L L N + ++ N Sbjct: 687 GRGTATYDGMALAQAIIEFVHNRVGAKTLFSTHYHELTALEGELDHLQNVHVGATEENGE 746 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 ++FLHKV PG AD SYGI V KLAG+P +++RA IL + E Sbjct: 747 LVFLHKVTPGPADKSYGIHVAKLAGMPTPLLTRANQILTSLE 788 >gi|78046908|ref|YP_363083.1| DNA mismatch repair protein MutS [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|90109862|sp|Q3BVY0|MUTS_XANC5 RecName: Full=DNA mismatch repair protein mutS gi|78035338|emb|CAJ22983.1| DNA mismatch repair protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 873 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 295/888 (33%), Positives = 477/888 (53%), Gaps = 50/888 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M+Q+ KS PD L+F+RMGDFYELF+DDA A+R L ITLT+RG G IPM G Sbjct: 20 TPLMKQFFAAKSDYPDLLLFFRMGDFYELFYDDARKAARLLDITLTQRGSSGGAPIPMAG 79 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH Y+ +L+ +G +AICEQI P AK LV R VVR+VTPGT+T++ LL Sbjct: 80 VPVHAYEGYLARLVALGESVAICEQIGDPALAK-----GLVERKVVRIVTPGTVTDEALL 134 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKEL 204 LMA++R + + +AW D++ G F ++ + D L ++I R++P E++ +++ Sbjct: 135 DERRDTLLMAISRSKHGYGLAWADLAGGRFLVNEVDSADALEAEIARLEPAELLVPDED- 193 Query: 205 SHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAA 262 + G V + P FD ++ ++ + + FG AA A Sbjct: 194 ---NWPDFLR--GRTGVRRRPPWLFDADSGRRQLLAFFKLHDLSGFGIDDKPCATAAAGA 248 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 + Y+++TQ P + E + +++A R +LE+ + G +LL +D ++ Sbjct: 249 LLGYVEETQKQRLPHLTSIAMEVASEAISMNAATRRHLELDTRVDGDTRNTLLGVLDSTV 308 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGRL + PL + R ++ I + +++ ++ D+ R L+R+ Sbjct: 309 TPMGGRLLRRWLHRPLRLRDVLLQRHHAVGTLIDAGADAD-LREAFRALGDLERILTRVA 367 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK------TLS 436 + P+D + +RDG+ + + D P +L+ L L + L Sbjct: 368 LRSARPRDFSTLRDGLALLPKVRTILAPLDSP--------RLQTLHAELGEHDATAHLLI 419 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 S +++ P DGG + G DA LDE R L + + + L+ + + I LK+ +N Sbjct: 420 SAVAETPPLKLSDGGVIATGYDAELDELRRLSTNADQFLIDLEQRERASSGIATLKVGYN 479 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+IE++ A ++ + RQT++N R+ T EL E+++ +A +L Sbjct: 480 RVHGYYIEISKGQAE------KAPLHYSRRQTLTNAERYITEELKSFEDKVLSARERSLS 533 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 E +E L +A+ + E L + ++ +D+ A A+ ++ +P +D++ ++ Sbjct: 534 REKLLYEGLLDALGTELEGLKRCAGALSELDVLAGFAERAQALDWSQPELDHAPCLRIEH 593 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE +Q PF ND DL +D+ ++ ++TGPNMGGKST++RQNALIV++ Sbjct: 594 GRHPVVEAVREQ----PFEPNDLDLH--SDR---RMLVITGPNMGGKSTYMRQNALIVLL 644 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A +GSYVPAS A IG +D++ +R+G+ D+LA G+STFMVEM ET+ IL+ AT QS V++D Sbjct: 645 AHIGSYVPASRAVIGPIDRILTRIGAGDDLARGQSTFMVEMAETSYILHHATPQSLVLMD 704 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK-----SLKRFHNATLQ 791 EIGRGT+T DGL++A A +L TNRC L ATH+ ELT L+ N L Sbjct: 705 EIGRGTSTYDGLALADAVARHLAHTNRCYTLFATHYFELTALADESHAGGASGIANVHLD 764 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR 851 + E ++F+H V G A+ S+G+QV LAGLP +++A L E+ + + Sbjct: 765 AVEHGERLVFMHAVKDGPANRSFGLQVAALAGLPKAAVTQARRRLVELEQRGGESHS-AQ 823 Query: 852 LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + + + + E ++ L+ DE++P AL+ LY +KA Sbjct: 824 MAPTALDAPQQFGLFTAPSSAAQEALQALDPDELTPKQALEALYRLKA 871 >gi|312872874|ref|ZP_07732936.1| DNA mismatch repair protein MutS [Lactobacillus iners LEAF 2062A-h1] gi|311091608|gb|EFQ49990.1| DNA mismatch repair protein MutS [Lactobacillus iners LEAF 2062A-h1] Length = 854 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 284/872 (32%), Positives = 477/872 (54%), Gaps = 41/872 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY +IK PD+ +FYR+GDFYELF DDA+ ++ L +TLT R K IPM G Sbjct: 6 TPMMEQYYKIKQQYPDAFLFYRVGDFYELFEDDAVKGAKLLELTLTHRSNKSAKPIPMAG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP + YI L+ G+++AICEQ+E P +A+ +V+R +++LVTPGT+ D Sbjct: 66 VPHLAVDSYINTLVDKGYKVAICEQLEDPKKAQ-----GMVKRGIIQLVTPGTVINDNPD 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 +SNYL ++ W + + D+STG + ++ + ++++++ + RE+++ E Sbjct: 121 QAKESNYLTSLCSSSQGWGLTYCDLSTGESYATHLTSWEMIVNELLSLQTRELVYGEALT 180 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S K +F + ++QP +++ + + T +Q+E A + Sbjct: 181 SD---KQIFLKKAGITLSQP----------VKLSKEHAEVSYVTQQLHNQLEIAATKQLL 227 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSIT 323 +Y+ TQ + + + + L + ++NLE++++ +G + SL +D + T Sbjct: 228 AYLLATQKRSLAHLQVTQSYEPNQYLQMSHIVQTNLELIKSAKTGKKMGSLFWLLDKTST 287 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 GGRL I PL ++I +R + + I K L+ D+ R R+ + Sbjct: 288 AMGGRLLKSWIERPLISLSEIKSRQLVVTALFDDYFSREKIIKQLQGVYDLERLTGRVAL 347 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFL--KNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 G +++ + D + I+N+ KN++ ++ LK + + KT+ + Sbjct: 348 GSANARELLQLADSLAVVPEIINILANSKNEVLNNFAQKIDPLKGIHDLIVKTIV----E 403 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + P ++GG ++ G + LD R K+ +A + E+T I NL++ +N GY Sbjct: 404 NPPLSTKEGGIIKAGVSSQLDRYRDAMMNGKKWLADMANSEREKTGINNLRVGYNKVFGY 463 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IEVT+S KD DR++ +QT++N R+ T+EL + E I A + + +E E Sbjct: 464 YIEVTNSY-----KDKVPLDRYMRKQTLTNAERYITVELKEHEALILEAQDYSTDLEYEL 518 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY-CRPIIDNSTNFIVKDGRHP 620 F L I + +L ++ ++ +D+ ++L+++ NY C +S+ + +GRHP Sbjct: 519 FTNLREDIKKYIPALQKLAKQLSSLDVLATFSLLSEQNNYVCPQFSQDSSAINIVNGRHP 578 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + S + +I ND + ++L+TGPNM GKST++RQ ALI+IMAQ+G Sbjct: 579 VVEKVM---SDEEYIPNDVKMD-----EQTNIFLITGPNMSGKSTYMRQLALIIIMAQIG 630 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 ++PA A + I DK+F+R+G+ D+L SG+STFMVEM E LN AT +S ++ DEIGR Sbjct: 631 CFIPADSAVLPIFDKIFTRIGAGDDLISGKSTFMVEMSEANIALNNATKRSLILFDEIGR 690 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A I+YLH+ + L ATH+HELTDL + L N + + N +I Sbjct: 691 GTATYDGMALAGAIIKYLHDKVGAKTLFATHYHELTDLDQELAHLKNIHVGATQENGHLI 750 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 FLHK++PG AD SYGI V +LAGLP V+ A +LK EK + NQ ++ Sbjct: 751 FLHKILPGAADQSYGIHVAQLAGLPTKVLREATHMLKQLEK-HSDNQAAFSDEQLDLFGS 809 Query: 861 ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALK 892 ++ +S ++ + +IK L L+E++PL ++ Sbjct: 810 SDQHKMSDEEQDVLTQIKNLYLNEITPLQVMQ 841 >gi|314933475|ref|ZP_07840840.1| DNA mismatch repair protein MutS [Staphylococcus caprae C87] gi|313653625|gb|EFS17382.1| DNA mismatch repair protein MutS [Staphylococcus caprae C87] Length = 873 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 307/834 (36%), Positives = 460/834 (55%), Gaps = 63/834 (7%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPMM+QY++IKS D L+F+R+GDFYE+FF+DA ASR L ITLTKR I Sbjct: 5 MANVTPMMQQYLKIKSEYDDCLLFFRLGDFYEMFFEDAKEASRVLEITLTKRDAKKENPI 64 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A+ YI+ LI G+++AICEQ+E P + K +V+R VVR+VTPGT+ E Sbjct: 65 PMCGVPYHSADSYIETLINNGYKVAICEQMEDP-----KQTKGMVKREVVRIVTPGTVME 119 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREIIF 199 + +NY+++ + E A+++ D+STG FK ST D L+++I I+P EI+ Sbjct: 120 QGGVDEKQNNYILSFVK-GEELALSYCDVSTGEFK-STHFQDEATLLNEITTINPNEIVV 177 Query: 200 SEKELSHAEYKSLFETLGNVAVAQ--------PNVFFDHSISESR--IADYYNITTVDTF 249 +E ELS + + T + V + N H + +S + DY + T Sbjct: 178 NE-ELSDELKRQISMTTETITVRECISDEQYDTNKLTHHLMHKSAQLLLDYIHHTQK--- 233 Query: 250 GSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-G 308 S +E+ AA+ ++K +D A+ NLE+ ++ Sbjct: 234 RDLSHIEEVVQYAAVDFMK-----------------------MDFYAKRNLELTESIRLK 270 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKIL 368 S++ +LL +D + T G R + + PL +IN RL+ + FI I + ++ L Sbjct: 271 SKKGTLLWLMDETKTPMGARRLKQWVDRPLISKDQINDRLNIVEEFINRFIERDTLRNYL 330 Query: 369 KSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP 428 D+ R + R+ G +D+ ++ I +I L N+L + +L+ L Sbjct: 331 NQVYDIERLVGRVSYGNVNARDLIQLKHSISEIPHIKELL--NELDAQTTTQFNELEPLD 388 Query: 429 QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 LE S++ + P +DGG + G + LDE K +A LQ K E T I Sbjct: 389 DLLELLEESLVEE-PPISVKDGGLFKTGFNEQLDEYLEASKNGKTWLAELQAKERERTGI 447 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHR-QTMSNLTRFTTLELIDLENRI 547 K+LKI N GYFIE+T ++ + E D +R QT+SN RF T EL + E+ I Sbjct: 448 KSLKISFNKVFGYFIEITRANL----QGFEPSDYGYNRKQTLSNAERFITDELKEKEDII 503 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 A + A+ +E + F L I +E L +++I+ +D + A +A++ NY RP Sbjct: 504 LGAEDKAIELEYQLFVKLREHIKTYTERLQKQAKIISELDCLQSFAEIAQKYNYVRPSFS 563 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 + +++ RHP+VE+ + ++ NDC L+ N ++L+TGPNM GKST++ Sbjct: 564 DDKTLHLENSRHPVVERVMDHND---YVPNDCSLN-----NDTFIYLITGPNMSGKSTYM 615 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ A+I IMAQMG+YVP A + I D++F+R+G+AD+L SG+STFMVEM+E L A Sbjct: 616 RQVAIISIMAQMGAYVPCDSAILPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTYA 675 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 T S +I DEIGRGT+T DGL++A A IEY+ +T+ + L +TH+HELT L + L N Sbjct: 676 TENSLIIFDEIGRGTSTYDGLALAQAMIEYVAQTSHAKTLFSTHYHELTSLDQMLPCLKN 735 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 + ++ +IFLHKV G D SYGIQV KLA LP VISRA IL FE+ Sbjct: 736 VHVAANEYQGELIFLHKVKDGAVDDSYGIQVAKLADLPVEVISRAQIILDEFEQ 789 >gi|228472953|ref|ZP_04057710.1| DNA mismatch repair protein MutS [Capnocytophaga gingivalis ATCC 33624] gi|228275535|gb|EEK14312.1| DNA mismatch repair protein MutS [Capnocytophaga gingivalis ATCC 33624] Length = 863 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 304/887 (34%), Positives = 492/887 (55%), Gaps = 50/887 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M+QY +IK+ PD+L+ +R+GDFYE F +DA+ S+ LGI LT R G+ + G Sbjct: 8 TPLMKQYNQIKAKYPDALLLFRVGDFYETFREDAIKTSQVLGIVLTNRNNG-GEQTELAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H+ N Y+ KL+K G+R+AIC+Q+E P + K++V+R V LVTPG D +L Sbjct: 67 FPHHSLNSYLPKLVKAGYRVAICDQLEDP-----KLTKTIVKRGVTELVTPGVALNDDIL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH---DRLISDIMRIDPREIIFSEK 202 +N+L ++ E IA++DISTG + ++ ++ D+L+ + P E++ ++K Sbjct: 122 QSGQNNFLASIWLDSPENGIAFLDISTGEYYVAQGDNAYTDKLLENFR---PNEVLVAKK 178 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA--- 259 + ++++LF T + + V+ ES + +N ++ F +E+ + Sbjct: 179 Q--RKDFETLFGTHFHCFSLEDWVYKGDFAYES-LTKQFNTNSLKGFA----IEELSNGI 231 Query: 260 --AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 A A + Y+ +TQ + I +R Q +++D NLE+ S + SLL Sbjct: 232 LSAGAILHYLSETQHHHLQHITSIKRIVSQEAVWLDRFTIQNLELYGGTSNT-SVSLLAV 290 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 ID +++ G R +A PLT +I R + + ++N + +++ L+ D+ R Sbjct: 291 IDKTLSPMGSRTLKRWLALPLTSLEQIQKRHQVVAYLVENSEVREKVREQLQRVNDLERL 350 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 LS++ + P+++ +++ +R+ + I L L + L +++ L +L + + Sbjct: 351 LSKVVTTKITPREVIYLKNSLRAILPIRELALSSPCAA-LTALAQQIHPL-DTLCDRIET 408 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 ML++D P G ++ + LDE R+L K + + + ++T I +LKI NN Sbjct: 409 MLNEDAPVNILKGEVFKENFSSELDELRNLSVSGKNYLDQMLEREIQQTHISSLKIDSNN 468 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+ EV + + KD + +I +QT+ N R+ T EL + E +IT+A + Sbjct: 469 VFGYYFEVRN-----VHKD-KVPPHWIRKQTLVNAERYITEELKEYEEKITHAQERITAL 522 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E E F L II+ + + I ID + LA E +Y P +D+S +K Sbjct: 523 EQEFFSQLITEIIQYISPIQQTATAIGQIDALCGFSTLAVENHYSCPTLDDSLVIDLKGA 582 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP++EK L ++P+IAND L D S ++ ++TGPNM GKS LRQ ALIV+MA Sbjct: 583 RHPVIEKQLP--PTQPYIANDIYL----DNESQQIMMITGPNMSGKSALLRQVALIVLMA 636 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+GS+VPA+ A IGIVDK+F+RVG++DN++ G STFMVEM ETA ILN +N+S ++LDE Sbjct: 637 QIGSFVPATEAKIGIVDKIFTRVGASDNISQGESTFMVEMNETALILNNLSNRSLILLDE 696 Query: 738 IGRGTATLDGLSIAWATIEYLHE-TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 IGRGT+T DG+SIAWA EYLHE + L ATH+HEL ++ R N ++ V + Sbjct: 697 IGRGTSTYDGISIAWAIAEYLHEHPTHAKTLFATHYHELNEMQNEFSRIKNFSVSVKEVK 756 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 I+FL K+I G ++HS+GI V K+AG+P VI +A +LK E+ H +D + + Sbjct: 757 GSILFLRKLIEGGSEHSFGIHVAKMAGMPQYVIEKANSVLKKLER--SHQLEDNK---KQ 811 Query: 857 IQTKESKN-NLSKNDKLFVEKIKC----LNLDEMSPLTALKTLYAVK 898 + KE + + D +E IK N+D ++P+ AL L +K Sbjct: 812 LTQKEGMQLSFFQLDDPLLEDIKRQILDTNIDNLTPIEALMKLNNIK 858 >gi|238750592|ref|ZP_04612092.1| DNA mismatch repair protein mutS [Yersinia rohdei ATCC 43380] gi|238711240|gb|EEQ03458.1| DNA mismatch repair protein mutS [Yersinia rohdei ATCC 43380] Length = 819 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 300/856 (35%), Positives = 469/856 (54%), Gaps = 45/856 (5%) Query: 48 MGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAI 107 MGDFYELF+ DA AS+ L I+LTKRG G+ IPM GVP H+ +Y+ KL+++G AI Sbjct: 1 MGDFYELFYSDAKRASQLLDISLTKRGASAGEPIPMAGVPYHSIENYLAKLVQLGESAAI 60 Query: 108 CEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAW 167 CEQI P +K V R VVR+VTPGT++++ LL N L A+ + + A Sbjct: 61 CEQIGDPAT-----SKGPVERKVVRIVTPGTVSDEALLQERQDNLLAAIWQDARGFGYAT 115 Query: 168 IDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNV 226 +DIS+G F+++ ++ + + +++ R +P E+++ E + E SL E + +P Sbjct: 116 LDISSGRFRVAEPADLETMAAELQRTNPAELLYPE----NFESMSLLEQRHGLR-RRPLW 170 Query: 227 FFDHSISESRIADYYNITTVDTFGSFSQVEKT--AAAAAISYIKKTQMVNKPTIGYPERE 284 F+ ++ ++ + + FG Q + AA + Y+K TQ + P I E Sbjct: 171 EFELETAKQQLNLQFGTRDLIGFG-VEQAHQALRAAGCLLQYVKDTQRTSLPHIRGLTME 229 Query: 285 DIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKI 344 Q + +D+A R NLE+ + LSG E +L +D S+T G R+ + P+ D + Sbjct: 230 RQQDGIIMDAATRRNLELTQNLSGGTENTLAAILDCSVTAMGSRMLKRWLHMPIRDINVL 289 Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 R +I +Q+ + +Q L+ D+ R L+RL + P+D+A +R + I Sbjct: 290 TARQQAIGG-LQD--ITAELQAPLRQVGDLERILARLALRTARPRDLARMRHAFQQLPEI 346 Query: 405 LNLFLKNDLP--EELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLD 462 L ++P + L V + +L LE+ + + P RDGG + G +A LD Sbjct: 347 HRLLQPVNVPHVQNLLSQVGQFDELQNLLERAIV----EAPPVLVRDGGVIAPGYNAELD 402 Query: 463 ETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDR 522 E R+L D + + L+++ E+ + LK+ N GYFI+V+ + ++ Sbjct: 403 EWRALADGATDYLDRLEIREREKLGLDTLKVGFNGVHGYFIQVSRGQSHLVPI------H 456 Query: 523 FIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQV 582 ++ RQT+ N R+ EL + E+++ + AL IE +E + + ++ L ++ Sbjct: 457 YVRRQTLKNAERYIIPELKEYEDKVLTSKGKALAIEKGLYEEIFDLLLPHLSDLQTSANA 516 Query: 583 IAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLS 642 +A +D+ LA A+ NY P++ + + GRHP+VE+ L S+PFI+N LS Sbjct: 517 LAELDVLANLAERAETLNYNCPVLSDKPGIKILGGRHPVVEQVL----SEPFISNPLTLS 572 Query: 643 CPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGS 702 ++ ++TGPNMGGKST++RQ ALIV++A MGSYVPA A IG VD++F+RVG+ Sbjct: 573 PQR-----RMLIITGPNMGGKSTYMRQTALIVLLAHMGSYVPADQATIGPVDRIFTRVGA 627 Query: 703 ADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETN 762 AD+LASGRSTFMVEM ETA+IL+ AT QS V++DEIGRGT+T DGLS+AWA E L Sbjct: 628 ADDLASGRSTFMVEMTETANILHNATEQSLVLMDEIGRGTSTYDGLSLAWACAENLASRI 687 Query: 763 RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLA 822 + L ATH+ ELT L + ++ N L + E I F+H V G A SYG+ V LA Sbjct: 688 KAMTLFATHYFELTTLPEKMEGVVNVHLDALEHGETIAFMHSVQDGAASKSYGLAVAALA 747 Query: 823 GLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNL 882 G+P VI RA LK E L +N ++ ++ L++ VE ++ ++ Sbjct: 748 GVPRDVIKRARQKLKELESL-SNNAAASKIDGSQLTL------LNEEISPAVEALEAIDP 800 Query: 883 DEMSPLTALKTLYAVK 898 D +SP AL+ +Y +K Sbjct: 801 DSLSPRQALEWIYRLK 816 >gi|91789193|ref|YP_550145.1| DNA mismatch repair protein MutS [Polaromonas sp. JS666] gi|122967563|sp|Q127P5|MUTS_POLSJ RecName: Full=DNA mismatch repair protein mutS gi|91698418|gb|ABE45247.1| DNA mismatch repair protein MutS [Polaromonas sp. JS666] Length = 864 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 296/887 (33%), Positives = 464/887 (52%), Gaps = 45/887 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K+ TPMM+QY+ IK+ PD+LVFYRMGDFYE+FF DA A+R L ITLT+RG+ G+ + Sbjct: 6 KTHTPMMQQYLAIKAEYPDTLVFYRMGDFYEVFFADAEKAARLLDITLTRRGQSGGEPVV 65 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H+ Y+ KLIK+G +AICEQ+ +K V R VVR+VTPGTLT+ Sbjct: 66 MAGVPFHSLEGYLAKLIKLGESVAICEQV-----GDVATSKGPVERKVVRVVTPGTLTDT 120 Query: 143 QLLSPTDSNYLMAVAR-IRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 +LL+ + L+AV + R +AW+ ++ G ++ +D L + + R++P E++++ Sbjct: 121 ELLNDKAESILLAVHQGARNTCGLAWLSVTQGEIHLAHCANDELETWLARVNPSELLYN- 179 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 +++ A ++ +T A A+P FD ++ R+ + + ++ ++ + + E AAA Sbjct: 180 VDVTPA-FEQRLKTQRCAASARPAWQFDGALGARRLLEQLKVASLASWNAEALNEAHAAA 238 Query: 262 AAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 +A+ Y + TQ P + + + + + R NLE+ +TL G +L +D Sbjct: 239 SALLGYAEHTQGRALPHVQGLQVVRSGELIELPQSTRRNLELTQTLRGEDSPTLFSLLDT 298 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 TG G R + SP D + RL++I P ++ LK DV R +R Sbjct: 299 CSTGMGSRALKSWLLSPRRDRAQAQARLEAIAHLRSGPQ--QTLRARLKGCSDVERITAR 356 Query: 381 LKIGRGEPKDIAVIRDGI---------RSGINILNLFLKNDLPEELRGAVEKLKKLPQSL 431 L + + P+++ +R + +G +I LPE L E L+ P Sbjct: 357 LALRQVRPRELVALRQTLDKLQQQSERAAGESI-------GLPELLTRIFEDLQPPPGCT 409 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 E L + D+ RDGG + G DA LDE R+++ + L+ + T I NL Sbjct: 410 E-LLGRYVLDEPAALIRDGGVINHGCDADLDELRAIQTNCDGFLLELEGRERARTGIANL 468 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 +++ N G++IEVT + D + RQT+ N R+ T EL E++ +A Sbjct: 469 RVQFNKVHGFYIEVTQGQLDKVPDD------YRRRQTLKNAERYITPELKAFEDKALSAQ 522 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 AL E +E L + + +L ++ +A +D ALA + N+ P+ Sbjct: 523 ERALAREKWLYEQLLDQLQAFIPALSRLARALASLDALCALAERSLTLNWAAPVFVKEPC 582 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 + GRHP+VE L + FIANDC LS ++ ++TGPNMGGKST++RQ A Sbjct: 583 IDITQGRHPVVEARLAETGGGSFIANDCSLS-----GKHRMQVITGPNMGGKSTYMRQVA 637 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LIV++A +GSYVPA+ +G +D + +R+G+AD++A+ +STFM+EM E A IL+ AT S Sbjct: 638 LIVLLASVGSYVPAARCRLGPIDAIHTRIGAADDVANAQSTFMLEMTEAAQILHTATPHS 697 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 V++DEIGRGT+T DGL++A YLH + L ATH+ ELT+ N + Sbjct: 698 LVLMDEIGRGTSTFDGLALAGGIAAYLHNKTQAFTLFATHYFELTEFPAQHHGAINVHVS 757 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR 851 +S I+FLH + PG A SYGI V KLAG+P+ V++ A L E + + Sbjct: 758 AVESGANIVFLHHIEPGPASKSYGIAVAKLAGVPSAVVTHARHALSALETQQTETRAQVD 817 Query: 852 LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 L+ + + ++ D +SP AL LY +K Sbjct: 818 LF------AAPPEAAAPVQTALDRALDTIDPDTLSPREALDALYQLK 858 >gi|298490667|ref|YP_003720844.1| DNA mismatch repair protein MutS ['Nostoc azollae' 0708] gi|298232585|gb|ADI63721.1| DNA mismatch repair protein MutS ['Nostoc azollae' 0708] Length = 854 Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust. Identities = 296/840 (35%), Positives = 447/840 (53%), Gaps = 33/840 (3%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLT-KRGKH 76 L E+ + M + Y+E+K P +L+ YR+GDF+E FF DA+ SR L + LT K G Sbjct: 20 LVEDRSKLSKMYQHYVEMKDKYPHALLLYRVGDFFETFFQDAVTVSRELELVLTSKHGGE 79 Query: 77 LGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTP 136 LG+ I M GVP H Y L++ G+ + IC+Q+E EA LV+R V R++TP Sbjct: 80 LGR-IAMTGVPHHAWERYTTLLVEKGYAVVICDQVEDSSEAV-----GLVKREVTRILTP 133 Query: 137 GTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIF-KISTSNHDRLISDIMRIDPR 195 GTL E+ +L + +NYL AV W +A+ DISTG F S+ + L ++MR+ P Sbjct: 134 GTLLEEGMLQTSRNNYLAAVVIAVNHWGLAYADISTGEFLTCEGSDLEHLTQELMRLQPS 193 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVF---------FDHSISESRIADYYNITTV 246 E++F ET ++ P F F S + S++ + + ++ Sbjct: 194 EVLFPTNAPDLGTLLRPGETSPSLPQCLPPTFCYSLRSQLPFSQSEARSKLLQKFKLRSL 253 Query: 247 DTFGS-FSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT 305 + G + AA + YI+ TQ N + + L +D R NLEI +T Sbjct: 254 EGLGCEHLPLAVRAAGGLLEYIEDTQKQNPVPLQLLHTYSLTDYLIVDHQTRRNLEITQT 313 Query: 306 L-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPI 364 + G+ SLL ++ + T GGR + PL D I R +I +N L + Sbjct: 314 VRDGTFHGSLLWALNRTTTAMGGRALRRWLLQPLLDIKGIRARQYTIQELCENTPLRQDL 373 Query: 365 QKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKL 424 +++L+ D+ R R G +D+ + D S + + D A++K+ Sbjct: 374 RRLLRKIYDLERLTGRAGSGTANARDLMALADSFSSLPELSRIV--EDARSPFLKALQKV 431 Query: 425 KKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAE 484 + + L + L + + + P ++G +R G + LDE ++ + ++ IA+L++ Sbjct: 432 PPVLEELAERLQAHIVESPPIHLKEGSLIRPGINPLLDERKATVEADQKWIANLEVDERA 491 Query: 485 ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLE 544 T+I LK+ N GY+I ++ S K + D +I +QT++N R+ T +L + E Sbjct: 492 RTRIPTLKVGFNKTFGYYISISRS------KSDQVPDNYIRKQTLTNEERYITPDLKERE 545 Query: 545 NRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP 604 RI A + +E E F L + + +E++ N S +A D+ LA LA Q YC P Sbjct: 546 ARILTARDDLNQLEYEIFAALRDEVGSHAETIRNISHAVAAADVLCGLAELAVHQGYCCP 605 Query: 605 IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSC---PNDKNSGKLWLLTGPNMG 661 + V DGRHP+VE++L + F+ N L P + S L +LTGPN Sbjct: 606 EMVEGWEIEVIDGRHPVVEQSL---PAGFFVPNSTTLGTGNEPTNHQSPDLVILTGPNAS 662 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKS +LRQ LI +MAQ+GS+VPA A +G+ D++F+RVG+ D+LA+G+STFMVEM ETA Sbjct: 663 GKSCYLRQVGLIQLMAQVGSFVPARSAKLGVCDRIFTRVGAVDDLATGQSTFMVEMNETA 722 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS 781 +ILN AT +S V+LDEIGRGTAT DGLSIAWA EYL + R + ATH+HEL +L+ Sbjct: 723 NILNHATVKSLVLLDEIGRGTATFDGLSIAWAVAEYLAVEIKSRTIFATHYHELNELASI 782 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 + N + V + + IIFLH+V PG AD SYGI+ G+LAGLP VI RA ++ EK Sbjct: 783 VSNVANYQVTVKELPDQIIFLHQVQPGGADKSYGIEAGRLAGLPTVVIKRAKQVMGQIEK 842 >gi|317504405|ref|ZP_07962387.1| DNA mismatch repair protein MutS [Prevotella salivae DSM 15606] gi|315664477|gb|EFV04162.1| DNA mismatch repair protein MutS [Prevotella salivae DSM 15606] Length = 886 Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust. Identities = 283/834 (33%), Positives = 462/834 (55%), Gaps = 39/834 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TPMM+Q+ +K+ +P++L+ +R GDFYE + +DA++A+ LGITLTKR + Sbjct: 6 KGLTPMMKQFFSMKAKHPEALMLFRCGDFYETYGEDAVIAAGILGITLTKRNNSAENSVE 65 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKK--RGNKSL------VRRNVVRLV 134 M G P H + Y+ KLI+ G R+AIC+Q+E P + ++ +G K L V+R + LV Sbjct: 66 MAGFPHHALDTYLPKLIRAGKRVAICDQLEDPKKKREQIKGKKGLTEMDKMVKRGITELV 125 Query: 135 TPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDP 194 TPG D +L+ ++N+L AV + I+++DISTG F +D + + P Sbjct: 126 TPGVAMTDTVLNYKENNFLAAVHFGKASCGISFLDISTGEFLTGEGTYDYVEKLLGNFSP 185 Query: 195 REIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 +E++++ +++ F + V VF + + + ++ ++ ++ FG Sbjct: 186 KEVLYNRDH--KQDFERYFGSKHCVFEMDEWVFSEQN-ARQKLLKHFGTKSLKGFGVEHM 242 Query: 255 VEKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS--GSRE 311 A AI Y++ TQ I R + + +D +LE++ + GS Sbjct: 243 KNGIIAGGAILQYLELTQHTQINHITSLSRIEEDKYVRLDRFTIRSLELIAPMQEDGS-- 300 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 SLL ID ++T GGR+ + PL D I RLD +++F Q P + + L Sbjct: 301 -SLLNVIDRTVTAMGGRMLRRWLVFPLKDVAPIKERLDIVDYFFQKPSFRQLVDEQLHRV 359 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIR---DGIRSGINILNLFLKNDLPEELRGAVEKLKKLP 428 D+ R +S++ +GR P++I ++ D +R I L+ +N E L+ E+L L Sbjct: 360 GDLERIVSKVAVGRVSPREIVQLKNALDAVRP-IKEACLYSEN---EALKRVGEQLN-LC 414 Query: 429 QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 +S++ + + D P G + DG + LDE R++R K + +Q AE T I Sbjct: 415 ESIKTRIEKEIQPDPPQLVAKGDVIADGYNKELDELRTMRRNGKDYLLKIQEDEAEATGI 474 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 +LK+ NN GY++EV ++ + + + +I +QT++ R+ T EL + E +I Sbjct: 475 LSLKVGFNNVFGYYLEVRNTFKN------KVPETWIRKQTLAQAERYITPELKEYEEKIL 528 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 A + +E F L A+ + + + ++A +D ++ A +++E Y RP ID+ Sbjct: 529 GADEKIMALEARLFNELVLAMQDFIPQIQINATLLARVDCLLSFAKISEENTYIRPQIDD 588 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 S ++ GRHP++E L + ++ ND L D ++ ++TGPNM GKS LR Sbjct: 589 SDVLDIRQGRHPVIETQLP--IGEHYVPNDVYL----DTQKQQVMMITGPNMAGKSALLR 642 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q ALIV++AQ+G +VPA A IG+VDK+F+RVG++DNL+ G STFMVEM E A+ILN + Sbjct: 643 QTALIVLLAQVGCFVPAERASIGLVDKIFTRVGASDNLSLGESTFMVEMTEAANILNNVS 702 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHET--NRCRGLLATHFHELTDLSKSLKRFH 786 +S V+ DE+GRGT+T DG+SIAWA +EYLHE R R L ATH+HEL ++ K+ R Sbjct: 703 PRSLVLFDELGRGTSTYDGISIAWAIVEYLHEQAKARARTLFATHYHELNEMEKNFVRIK 762 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 N + V + + +IFL K++ G ++HS+GI V ++AG+P +++ RA ILK E Sbjct: 763 NYNVSVKEVDGKVIFLRKLMRGGSEHSFGIHVAEIAGMPRSIVKRANTILKELE 816 >gi|261365688|ref|ZP_05978571.1| DNA mismatch repair protein MutS [Neisseria mucosa ATCC 25996] gi|288565780|gb|EFC87340.1| DNA mismatch repair protein MutS [Neisseria mucosa ATCC 25996] Length = 877 Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust. Identities = 308/898 (34%), Positives = 472/898 (52%), Gaps = 62/898 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM+QY+ IKS + D LVFYRMGDFYELF DDA+ A++ L ITLT RG+ G I M G Sbjct: 7 SPMMQQYLAIKSQHADKLVFYRMGDFYELFLDDAVEAAKLLDITLTTRGQMDGVPIKMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ +L+K+G +A+CEQ+ + K V R VVR+VTPGTLT+ L Sbjct: 67 VPFHAAEQYLARLVKMGKSVAVCEQV-----GEVGAGKGPVERKVVRIVTPGTLTDAAFL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE-KEL 204 ++N + AV + AIAW + +G FK + D+L ++ R+ EI+ E K L Sbjct: 122 EDKETNRIAAVNADKKHIAIAWASLQSGEFKTKLTTADKLADELARLQAAEILLPEGKSL 181 Query: 205 SHAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFG---SFSQVEKTAA 260 S F+T + + + N + F + +Y+ + FG + AA Sbjct: 182 SDG-----FQTT-SANITRLNSWQFAADAGAKLLTEYFGCQDLHGFGLDGKEHEAAVGAA 235 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 A ++YI+ TQ + + E + +D+A R NLEI +TLSG + +L +D Sbjct: 236 GALLNYIRLTQNLMPQHLDGISLETDSQYIGMDAATRRNLEITQTLSGKKSPTLFSILDG 295 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 T G RL A + PL I R +++ +Q LK+ D+ R +R Sbjct: 296 CATHMGSRLLALWLHHPLRSRAHIRARQEAVAALGSQ---YEALQGRLKNIADIERIAAR 352 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL-PQSL--EKTLSS 437 + +G P+D+A +RD + + I +L E +E LK + P++L +TL + Sbjct: 353 IAVGNARPRDLAALRDSLFALSEI-------ELSAEGSSLLETLKAVFPETLPVAETLKA 405 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + + + +DGG + G A LDE R +++ + L+ + E T + LK++ N Sbjct: 406 AVMPEPAVWLKDGGVINQGYCAELDELRHIQNHGDEFLLELEARERERTGLSTLKVEFNR 465 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 G++IE++ A D + RQT+ N RF T EL E+++ A AL + Sbjct: 466 VHGFYIELSKVQAEQAPAD------YQRRQTLKNAERFITPELKTFEDKVLTAQEQALAL 519 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E FE L I L A++ A +D+ A A E+ + P + +++G Sbjct: 520 EKRLFEALLKDIQTTLPQLQKAAKAAAALDVLSTFAATAAERGFVCPEFADYPVIHIENG 579 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ ++ F AN L + +L LLTGPNMGGKST++RQ A IV+MA Sbjct: 580 RHPVVEQQVRH-----FTANHTRLD-----HKHRLMLLTGPNMGGKSTYMRQVAHIVLMA 629 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 GS+VPA A IG +D++F+R+G++D+LAS RSTFMVEM ETA IL+ AT+QS V++DE Sbjct: 630 HTGSFVPADAAQIGPIDQIFTRIGASDDLASNRSTFMVEMSETAYILHHATDQSLVLMDE 689 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 +GRGT+T DGL++A A E+L + N+ L ATH+ ELT L ++ N L + + Sbjct: 690 VGRGTSTFDGLALAHAIAEHLLQKNKSFSLFATHYFELTKLPEAYATAVNMHLSALEQGQ 749 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY---- 853 I+FLH + PG A SYGI V KLAGLPN + A L E + + ++ Sbjct: 750 DIVFLHHIEPGPASKSYGIAVAKLAGLPNRALKAAQKHLDELEAQAAAVRPQLDIFSTLS 809 Query: 854 -------YPEIQTKESKNNLSKNDK------LFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + +T +++ ++N + E + + D+++P AL LY +K Sbjct: 810 SENEYSGFSQDETADTEAQTAENQETNPAHNALAEALNQIRPDDLTPREALDALYRLK 867 >gi|260663384|ref|ZP_05864275.1| DNA mismatch repair protein MutS [Lactobacillus fermentum 28-3-CHN] gi|260552236|gb|EEX25288.1| DNA mismatch repair protein MutS [Lactobacillus fermentum 28-3-CHN] Length = 880 Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust. Identities = 286/822 (34%), Positives = 455/822 (55%), Gaps = 46/822 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY +K PD+ +FYR+GDFYE+F +DA+ ++ L +TLT R K IPMCG Sbjct: 6 TPMMEQYQRVKDQYPDAFLFYRLGDFYEMFNEDAVKGAQLLELTLTSRSKSKDNPIPMCG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP ++Y+ LI G+++AICEQ+E P + K +V+R V RLVTPGT + Sbjct: 66 VPHRAVDNYVDILIDKGYKVAICEQMEDP-----KTTKGMVKREVTRLVTPGTTMDLAGD 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKEL 204 + +NYL A+ + + + +A+ D+STG K++ SN I++++ + RE++ +E E+ Sbjct: 121 AARQNNYLTALKQEQGGYNLAYADLSTGELKVTKVSNEAAAINELVNLQTREVV-TEPEV 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S SL + L + + ++++ +A Y + D ++ A + Sbjct: 180 S----ASLLDQLTKRNILRSTQ--GQVVNQAEVA-YLSQDLTDAG------QRDVVALLV 226 Query: 265 SYIKKTQMVNKPTIGYPERE---DIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 SY+ TQ K ++ + +R + S + ID ++ NLE+ L SG R+ +L +D Sbjct: 227 SYLLTTQ---KRSLAHLQRAVAYQLSSFMKIDHRSKVNLELTTNLRSGKRQGTLAWLLDE 283 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G RL + + PL D KI R D + + + +Q+ L D+ R R Sbjct: 284 TKTAMGSRLLKQWLDRPLLDQAKIERRYDRVQELLDHYFERQNLQEELIKVYDLERLAGR 343 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKTLSSM 438 + G +D+ ++ + I + D+P ++L A++ L+ + +++ ++ Sbjct: 344 VAYGSVNGRDLIQLKTSLEQVPKIKYILQTLDVPAFDDLEQALDPLEDVAGLIDRAIAP- 402 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + P DGG +RDG + LDE R K+ IA LQ + T I NLKI +N+ Sbjct: 403 ---EPPISVTDGGVIRDGYNHQLDEYRGAMQNGKQWIADLQEQERRATGINNLKIGYNHV 459 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IEVT ++ L DR+ +QT+ N RF T EL + E+ I A + + +E Sbjct: 460 FGYYIEVTKANIDKL-----PADRYERKQTLVNAERFATPELKEKESLILGAQDKSTALE 514 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 E F + A+ EQ + L + +A +D+ A A +A++ ++ RP +++ ++DGR Sbjct: 515 YELFVKVREAVKEQIDRLQKLAANLAALDVIQAFAKVAEDYHFVRPSLNHDHQLQIEDGR 574 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VEK + Q ++ ND + + L+TGPNM GKST++RQ AL +MAQ Sbjct: 575 HPVVEKFMGHQE---YVPNDVLMG-----GDTSILLITGPNMSGKSTYMRQLALTAVMAQ 626 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 MG +VPA A + I D++F+R+G+AD+L SG STFMVEM+E + L AT S ++ DEI Sbjct: 627 MGCFVPAKRAQLPIFDQIFTRIGAADDLVSGESTFMVEMMEANNALQNATADSLILFDEI 686 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGTAT DG+++A A IE++H + L +TH+HELT L L N + ++ N Sbjct: 687 GRGTATYDGMALAQAIIEFVHNRVGAKTLFSTHYHELTALEGELDHLQNVHVGATEENGE 746 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 ++FLHKV PG AD SYGI V KLAG+P +++RA IL + E Sbjct: 747 LVFLHKVTPGPADKSYGIHVAKLAGMPTPLLTRANQILTSLE 788 >gi|160947536|ref|ZP_02094703.1| hypothetical protein PEPMIC_01470 [Parvimonas micra ATCC 33270] gi|158446670|gb|EDP23665.1| hypothetical protein PEPMIC_01470 [Parvimonas micra ATCC 33270] Length = 861 Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust. Identities = 315/894 (35%), Positives = 486/894 (54%), Gaps = 74/894 (8%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+E+KS D ++FYR+GDFYE+FF+DA + S+ L + LTKR GK PMCG Sbjct: 5 TPMMKQYLEVKSNYNDCIIFYRLGDFYEMFFEDAKIVSKILDLALTKRDCGSGKTAPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H N Y+ KL+ G ++AICEQ++ P AK +V+R V++LVTPGT+ E L Sbjct: 65 IPHHVVNQYLYKLVSEGFKVAICEQVQDPKLAK-----GIVKREVIKLVTPGTIDEFDEL 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IF--KISTSNHDRLIS----DIMRIDPREII 198 + +NY+M++ T +I + DIST IF I N D LI+ +++R P E+I Sbjct: 120 ATNKNNYIMSIYMDSTNLSITYSDISTSEIFCTSIFEMNRDNLITALEEEVIRTTPSEVI 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDH---SISESRIADYYN-------ITTVDT 248 + L E KS+ + L N+ + V D S+ E+ Y N + ++D Sbjct: 180 INSNILKSLE-KSVIKLLKNLRIIYTKVDIDQDFKSLRENNEEFYSNNLSNKILLFSIDN 238 Query: 249 FGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT-LS 307 F + ++ KK + + L ID+ +R NLE+ + S Sbjct: 239 FYKYV----CRFNVKLNDFKKVNLYK-----------LSDYLRIDANSRINLELKKNNFS 283 Query: 308 GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI 367 SLL I+++ T G RL + + PL + KI R + + N L N ++++ Sbjct: 284 NDINGSLLSVINHTKTPMGFRLLNKWLDQPLIEIEKIQRRQSLVEDLVLNSNLRNKLEEL 343 Query: 368 LKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFL-KNDLPEELRGAVEKLKK 426 L S D+ R S++ G +D+ +++ + + I LFL N L + + Sbjct: 344 LASISDIERINSKISFGNCNARDLIHLKNSLSAVPKIKKLFLDSNTLFSNIALNIPD--- 400 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 + + + S + +D+ ++G ++ G D LD R+ + K + ++ T Sbjct: 401 -TEYIYNLIDSAILEDVGILLKEGNLIKIGYDEELDVIRNNKIVGKEKLIKYEVDQRNIT 459 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 IKNL++ N GYF EVT S +++ + E K QT++N R+ T EL+ +EN Sbjct: 460 GIKNLRLIFNKKTGYFFEVTKSYQNLVPEYFELK------QTLTNANRYKTNELLTIENM 513 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 I + + E E F + N I + L S +I+ ID +L+I+A + NYC+P + Sbjct: 514 IFGSEIDIIEKEYELFISIRNTIKMNIKILQKLSDIISFIDSIFSLSIVAFKNNYCKPTL 573 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGK----LWLLTGPNMGG 662 ++ +K+GRHP++E L S FI PND N G+ + ++TGPNM G Sbjct: 574 NSEGIIDIKNGRHPVIESFL--SSINEFI--------PNDTNIGQSDNLIQIITGPNMSG 623 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALIVI+AQ+GS+VPA A+I IVDK+F+R+G++DNL G STFMVEM E + Sbjct: 624 KSTYIRQIALIVILAQIGSFVPADSANISIVDKIFTRIGASDNLYKGESTFMVEMKEVNN 683 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL AT S +ILDE+GRGT+T DGLS+AWA +EY+ + + + L ATH+HEL DL + Sbjct: 684 ILRYATKNSLLILDEVGRGTSTFDGLSLAWAILEYITKNIKSKTLFATHYHELIDLEHTF 743 Query: 783 KRFHNATLQVSD--SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 N +QV + N+ I+FL K++ G A+ SYGI V KLAGLP VI+R+ IL + E Sbjct: 744 ACIKNKHIQVIEDKENDEIVFLRKIMDGGANKSYGIAVAKLAGLPMEVINRSKIILDSIE 803 Query: 841 KLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 +KD+ I+TK NDK+ + + +N++++SP+ A L Sbjct: 804 NKEIEIEKDIIDSSNVIKTK-------VNDKI-ITNLNSINIEKISPMEAFGIL 849 >gi|317404852|gb|EFV85225.1| mismatch repair protein [Achromobacter xylosoxidans C54] Length = 884 Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust. Identities = 300/904 (33%), Positives = 466/904 (51%), Gaps = 49/904 (5%) Query: 15 QIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRG 74 Q E TPMM+QY+ +K+ L+FYRMGDFYE+F++DA +R L +TLTKRG Sbjct: 6 QTTAAEAHAGHTPMMQQYLRLKAEAGPLLLFYRMGDFYEMFYEDAERGARLLNLTLTKRG 65 Query: 75 KHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLV 134 G IPM G+PVH Y+ +L+ +G +AICEQI P +K V R +VR+V Sbjct: 66 SSNGTPIPMAGLPVHAMEQYLARLVAMGESVAICEQIGDPA-----ASKGPVERRIVRIV 120 Query: 135 TPGTLTEDQLLSPTDSNYLMAV---ARIRTEWA-IAWIDISTGIFKISTSNHDRLISDIM 190 TPGTLT+D LL L AV R A +AW+++++G F+++ +L S++ Sbjct: 121 TPGTLTDDALLPAKADRALAAVFVTGNARAPRAGLAWLNLASGDFRVTECAPAQLESELH 180 Query: 191 RIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG 250 RI P EI+ ++ AE+ FE + P+ F+ + + + ++ T+ F Sbjct: 181 RIAPAEIVCADS----AEFDFPFEGARSRV---PDWHFESDGARAHLLAHFKTDTLAGFD 233 Query: 251 SFSQVEKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS 309 AA A+ Y +TQ + E + +D R NLE+ +TLSG Sbjct: 234 IEDMPAGICAAGALLRYAARTQSQALAHVQSLSAERPGQFVLLDPVTRRNLELTQTLSGE 293 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPI---------- 359 +L +D T G RL + PL D+ R +I+ + + Sbjct: 294 DSPTLFSLLDGCRTPMGSRLLRRWLHHPLRDNAPAQARQQAISTLLAGRMDVEQTFGSAG 353 Query: 360 LINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRG 419 L+ ++ L + PD+ R +RL + P+++A +RD +++ + +L L Sbjct: 354 LLETLRGALNAFPDIERIAARLALRSVRPRELASLRDALQALPALRDLVAPMAASPRLND 413 Query: 420 AVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQ 479 V L P +L L ++ + RDGG L G DA LDE R+L + L+ Sbjct: 414 LVSHLSVDP-ALAALLVRAIAAEPAVAIRDGGVLATGFDAELDELRALAADGGDFLVQLE 472 Query: 480 LKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLE 539 + E T I NL+++ N G++IEVT + + +D + RQT+ N R+ T E Sbjct: 473 ARERERTGISNLRVEFNRVHGFYIEVTKGQTAKVPED------YRRRQTLKNAERYITPE 526 Query: 540 LIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQ 599 L E+++ +A + +L E FE L + + E L + + +A +D ALA A+ Sbjct: 527 LKTWEDKVLSAQDRSLAREKWLFEQLLDVLAEHVRPLSDCAGALAELDTLAALAEHARRH 586 Query: 600 NYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPN 659 ++ P + + + GRHP+VE+ +++ F N C L + ++ L+TGPN Sbjct: 587 DWIAPELSEQADIDIDAGRHPVVEQAIER-----FTPNGCRLD-----PARRMLLITGPN 636 Query: 660 MGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIE 719 MGGKST++RQ ALIV++A++GS+VPA+ A IG +D++F+R+G+AD+LA GRSTFM+EM E Sbjct: 637 MGGKSTYMRQVALIVLLARIGSFVPAARARIGRIDRIFTRIGAADDLAGGRSTFMMEMTE 696 Query: 720 TASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLS 779 A+IL +T S V++DEIGRGT+T DGL++AWA L NR L ATH+ ELT L Sbjct: 697 AAAILAASTPNSLVLMDEIGRGTSTYDGLALAWAIACRLLAHNRALTLFATHYFELTRLP 756 Query: 780 KSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF 839 N L ++S GI+FLH+V G A SYGIQV + AG+P VI +A L+ Sbjct: 757 AEQPASANVHLAAAESAGGIVFLHEVREGPASRSYGIQVAQRAGVPAAVIRQATRELERL 816 Query: 840 EKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKL-----FVEKIKCLNLDEMSPLTALKTL 894 E + ++ + D + E++ ++ D ++P AL L Sbjct: 817 EAQGAPTPQLGLFSAAADADAQAYAEADRADAIEALDTLREELAGIDPDSLTPREALDAL 876 Query: 895 YAVK 898 Y +K Sbjct: 877 YRLK 880 >gi|312873745|ref|ZP_07733790.1| DNA mismatch repair protein MutS [Lactobacillus iners LEAF 2052A-d] gi|311090743|gb|EFQ49142.1| DNA mismatch repair protein MutS [Lactobacillus iners LEAF 2052A-d] Length = 854 Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust. Identities = 283/872 (32%), Positives = 477/872 (54%), Gaps = 41/872 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY +IK PD+ +FYR+GDFYELF DDA+ ++ L +TLT R K IPM G Sbjct: 6 TPMMEQYYKIKQQYPDAFLFYRVGDFYELFEDDAVKGAKLLELTLTHRSNKSAKPIPMAG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP + YI L+ G+++AICEQ+E P +A+ +V+R +++LVTPGT+ D Sbjct: 66 VPHLAVDSYINTLVDKGYKVAICEQLEDPKKAQ-----GMVKRGIIQLVTPGTVINDNPD 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 +SNYL ++ W + + D+STG + ++ + ++++++ + RE+++ E Sbjct: 121 QAKESNYLTSLCSNSQGWGLTYCDLSTGESYATHLTSWEMIVNELLSLQTRELVYGETLT 180 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S K +F + ++QP +++ + + T +Q+E A + Sbjct: 181 SD---KQIFLKKAGITLSQP----------VKLSKEHAEVSYVTQQLHNQLEIAATKQLL 227 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSIT 323 +Y+ TQ + + + + L + ++NLE++++ +G + SL +D + T Sbjct: 228 AYLLATQKRSLAHLQVTQSYEPNQYLQMSHIVQTNLELIKSAKTGKKMGSLFWLLDKTST 287 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 GGRL I PL ++I +R + + I K L+ D+ R R+ + Sbjct: 288 AMGGRLLKSWIERPLISLSEIKSRQLVVTALFDDYFSREKIIKHLQGVYDLERLTGRVAL 347 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFL--KNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 G +++ + D + I+N+ KN++ ++ LK + + KT+ + Sbjct: 348 GSANARELLQLADSLAVVPEIINILANSKNEVLNNFAQKIDPLKGIHDLIVKTIV----E 403 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + P ++GG ++ G + LD R K+ +A + E+T I NL++ +N GY Sbjct: 404 NPPLSTKEGGIIKSGVSSQLDRYRDAMMNGKKWLADMANSEREKTGINNLRVGYNKVFGY 463 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IEVT+S KD DR++ +QT++N R+ T+EL + E I A + + +E E Sbjct: 464 YIEVTNSY-----KDKVPLDRYMRKQTLTNAERYITVELKEHEALILEAQDYSTDLEYEL 518 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY-CRPIIDNSTNFIVKDGRHP 620 F L I + +L ++ ++ +D+ ++L+++ NY C +S+ + +GRHP Sbjct: 519 FTNLREDIKKYIPALQKLAKQLSSLDVLATFSLLSEQNNYVCPQFSQDSSAINIVNGRHP 578 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + S + +I ND + ++L+TGPNM GKST++RQ ALI+IMAQ+G Sbjct: 579 VVEKVM---SDEEYIPNDVKMD-----EQTNIFLITGPNMSGKSTYMRQLALIIIMAQIG 630 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 ++PA A + I DK+F+R+G+ D+L SG+STFMVEM E + L AT +S ++ DEIGR Sbjct: 631 CFIPADSAVLPIFDKIFTRIGAGDDLISGKSTFMVEMSEANTALKNATKRSLILFDEIGR 690 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A I+YLH+ + L ATH+HELTDL + L N + + N +I Sbjct: 691 GTATYDGMALAGAIIKYLHDKVGAKTLFATHYHELTDLDQELAHLKNIHVGATQENGHLI 750 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 FLHK++PG AD SYGI V +LAGLP V+ A +LK EK + NQ ++ Sbjct: 751 FLHKILPGAADQSYGIHVAQLAGLPTKVLREATHMLKQLEK-HSDNQAAFSDEQLDLFGS 809 Query: 861 ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALK 892 ++ +S ++ + +IK L L+E++PL ++ Sbjct: 810 SDQHKMSDEEQDVLTQIKNLYLNEITPLQVMQ 841 >gi|329666837|gb|AEB92785.1| DNA mismatch repair protein MutS [Lactobacillus johnsonii DPC 6026] Length = 857 Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust. Identities = 290/889 (32%), Positives = 487/889 (54%), Gaps = 48/889 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K +TPMM+QY EIK PD+ +FYR+GDFYELF DDA+ ++ L +TLT R IP Sbjct: 4 KDTTPMMKQYYEIKEQYPDAFLFYRVGDFYELFEDDAIKGAQILELTLTHRSNKTKNPIP 63 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP + Y+ L++ G+++A+CEQ+E P +AK +V+R +++L+TPGT+ ++ Sbjct: 64 MAGVPHLAVDTYVNTLVEKGYKVALCEQLEDPKKAK-----GMVKRGIIQLITPGTMMQE 118 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSE 201 + DSNYL +V + + +A+ D+STG F ++ + + ++++ + RE++++ Sbjct: 119 RPDQAKDSNYLTSVISTNSGFGLAYSDLSTGETFSTHLTDFEGVANELLSLQTREVVYN- 177 Query: 202 KELSH-AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 H + F N+ V++P S +A N+T + E A Sbjct: 178 ---GHLTDLNKDFLKKANITVSEPVEVEGEHAEISYVAQ--NLT--------NDAEIKAT 224 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTID 319 ++Y+ TQ + + + + L + ++NLE++++ S++ SL +D Sbjct: 225 KQLVAYLLSTQKRSLAHLQVAQSYEPTQYLQMSHTVQTNLELIKSAKTSKKMGSLFWLLD 284 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T GGRL I PL T+I R + + + + + LK D+ R Sbjct: 285 KTSTAMGGRLLKSWIERPLLSVTEITRRQEMVQALLDDYFTREKVIDSLKGVYDLERLTG 344 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G +++ + + + ILN L+ P L+ +++ L + + + + + Sbjct: 345 RIAFGSVNAREMLQLAHSLGAIPEILNALLETSNPH-LQNYAKQIDPL-KGIHDLIVNTI 402 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 D+ P +GG +R+G LD R + K+ ++ ++ E T I NLK+ +N Sbjct: 403 VDNPPLPTTEGGLIREGVSEQLDRYRDAMNNGKKWLSEMESHEREVTGINNLKVGYNKVF 462 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IEVT+S+ S + DR+ +QT++N R+ T +L + E I A + +E Sbjct: 463 GYYIEVTNSNKSKV-----PTDRYTRKQTLTNAERYITPDLKEHEALILEAEAKSTGLEY 517 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP-IIDNSTNFIVKDGR 618 + F L + + +L ++ IA +D+ A ++++ NY RP + + V +GR Sbjct: 518 DLFVKLREDVKKYIPALQKLAKQIASLDVLTNFATVSEQNNYVRPNFVTDKQEINVVNGR 577 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ + ++ +I ND + D N ++L+TGPNM GKST++RQ ALI IMAQ Sbjct: 578 HPVVEQVM---TAGSYIPNDVKMD--QDTN---IFLITGPNMSGKSTYMRQMALIAIMAQ 629 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA A + I D++F+R+G+AD+L SG+STFMVEM E L AT +S V+ DEI Sbjct: 630 IGSFVPADSATLPIFDQIFTRIGAADDLISGQSTFMVEMSEANDALQHATKRSLVLFDEI 689 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGTAT DG+++A A ++YLH+ + L ATH+HELTDL ++LK N + ++ N Sbjct: 690 GRGTATYDGMALAGAIVKYLHDKVGAKTLFATHYHELTDLDQTLKHLKNIHVGATEENGK 749 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL----YHHNQKDMRLYY 854 +IFLHK++PG AD SYGI V +LAGLP+ V+ A +LK EK + + L+ Sbjct: 750 LIFLHKILPGPADQSYGIHVAQLAGLPHKVLREATTMLKRLEKQGASELQPASEQLDLFV 809 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTLE 903 PE + S +S ++K +++I+ + L + +PL ++ V W E Sbjct: 810 PE---EASAPAISDDEKDVLDEIQNVYLADKTPLQVMEL---VAQWQQE 852 >gi|329904402|ref|ZP_08273796.1| DNA mismatch repair protein MutS [Oxalobacteraceae bacterium IMCC9480] gi|327548006|gb|EGF32745.1| DNA mismatch repair protein MutS [Oxalobacteraceae bacterium IMCC9480] Length = 889 Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust. Identities = 303/896 (33%), Positives = 469/896 (52%), Gaps = 59/896 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ +K+ +P L+FYRMGDFYELFFDDA+ A+R LGITLT+RG G I MCG Sbjct: 22 TPMMQQYLRLKADHPAILLFYRMGDFYELFFDDAVKAARLLGITLTQRGNSNGVPIKMCG 81 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A+ Y+ KL+++G +A+CEQI P +K V R V+R++TPGTL++ LL Sbjct: 82 VPFHAADQYLAKLVRLGESVALCEQIGDPAT-----SKGPVERKVLRVITPGTLSDADLL 136 Query: 146 SPTDSNYLMAVARIRTEWAI----AWIDISTGIFKI-----STSNHD-RLISDIMRIDPR 195 L+A++ + +I AW+ +++G ++ N D RL +I RI P Sbjct: 137 PEKSERCLLALSIVNQRKSITVGLAWLSMASGALRMMEFVSDAKNLDTRLRQEIERIAPA 196 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQV 255 EI+ S+ +L A P+ FD + + + + T+ G Sbjct: 197 EILISDGTDDWLNDAAL-----TARTAVPHWHFDTANGHKALLEQLGLATLQGHGIDDHS 251 Query: 256 EKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG----SR 310 + AA A+ Y + TQ + E+ + +D++ R NLE+ T+ G + Sbjct: 252 AVSGAAGALLWYAQSTQGKGLQHVRTLTVENENEFIGLDASTRRNLELTETIRGQDASAA 311 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 +L +D+ T G RL + D R +I+ I++ + + + L + Sbjct: 312 APTLFSLLDHCRTTMGSRLLRHWLHHARHDQQVARNRHAAIDALIRSDQAAD-LHRTLGA 370 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL--- 427 PD+ R +R+ + P+D+A G+R G+ L + L + G V L+ + Sbjct: 371 VPDIERITTRIALLSARPRDLA----GVRGGLQQLPALRDSLLACQRTGPVALLQSIHDA 426 Query: 428 ---PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAE 484 P + + ++ + RDGG + G DA+LDE R L + + + + L+ + Sbjct: 427 MATPSACLDLIERAIAPEPAAMVRDGGVIARGFDAALDELRGLSENAGQYLVDLETRERA 486 Query: 485 ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLE 544 T I NL++++N G++IEVT + D + RQT+ N R+ T EL E Sbjct: 487 RTGIANLRVEYNKVHGFYIEVTHGQTDKVPDD------YRRRQTLKNAERYITPELKAFE 540 Query: 545 NRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP 604 ++ +A + AL E +E L + +L + +A +D ALA A+ ++C P Sbjct: 541 DKALSAQDRALSREKILYEQLLLDLAPHIGTLQEIAHAVAQLDTLAALAEHARRHDWCAP 600 Query: 605 IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 + + GRHP+VE +++ FIANDC L ++ +L L+TGPNMGGKS Sbjct: 601 QLVAEPAISILQGRHPVVENMIER-----FIANDCLLD-----DAHRLLLITGPNMGGKS 650 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 T++RQ ALI ++A +GSYVPA+ A IG +D++F+R+G+AD+LA GRSTFMVEM E+A+IL Sbjct: 651 TYMRQVALITLLAYVGSYVPAASATIGPIDRIFTRIGAADDLAGGRSTFMVEMTESAAIL 710 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR 784 N AT QS V++DE+GRGT+T DGL++AWA +L +T R L ATH+ ELT L Sbjct: 711 NGATAQSLVLMDEVGRGTSTFDGLALAWAIARHLIDTTRSFTLFATHYFELTQLPDVHAS 770 Query: 785 FHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--KL 842 N L + + I+FLH V G A SYG+QV +LAG+P VI A L E + Sbjct: 771 ATNVHLSAIEHKDRIVFLHAVQEGPASQSYGLQVAQLAGVPQPVIRAARKHLALLEAQSV 830 Query: 843 YHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 Q D+ P + + L + + ++ D ++P AL LY +K Sbjct: 831 QSTPQFDLFAVAPSVDLPATAEP-----DLLRDALDRIDPDSLTPRDALAQLYELK 881 >gi|295706200|ref|YP_003599275.1| DNA mismatch repair protein MutS [Bacillus megaterium DSM 319] gi|294803859|gb|ADF40925.1| DNA mismatch repair protein MutS [Bacillus megaterium DSM 319] Length = 885 Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust. Identities = 302/921 (32%), Positives = 506/921 (54%), Gaps = 86/921 (9%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPM++QY+ IK+ D+ +F+R+GDFYE+FF+DA AS+ L ITLT R + I Sbjct: 1 MAAYTPMIQQYLRIKAEYQDAFLFFRLGDFYEMFFEDATTASQELEITLTSRDGGGQERI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A YI++LI+ G ++AICEQ+E P AK +V+R VV++++PGTL Sbjct: 61 PMCGVPYHSAPTYIERLIEKGFKVAICEQVEDPKHAK-----GVVKREVVQVISPGTLMN 115 Query: 142 DQLLSPTDSNYLMAVARIRTE-WAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREII 198 ++ L ++NY+ +V + + +A D+STG ++ +S HD ++S+I + +E++ Sbjct: 116 ERGLHEKENNYICSVTAFEDQTFGLALSDLSTGENSVTLVSSFHD-IVSEIYAKEAKEVV 174 Query: 199 FSEKELSHAEYKS-LFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 S +E+ + L +TL + +++S + DY V++ + Sbjct: 175 VS------SEFPADLLQTLKERMTI--TISYENSTEQVEGLDYL----VESLQQQKLI-- 220 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLK 316 T A + Y+ +TQ + + + I + ID ++ NLE+ T+ S ++ SLL Sbjct: 221 TTFARILQYLTRTQKRSLEHLQPVQFYQINEYMKIDLFSKRNLELTETIRSKGKKGSLLW 280 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D ++T GGRL I PL I+ RL+ ++ ++ ++++LK D+ R Sbjct: 281 LLDQTVTAMGGRLLKNWIDRPLLKQADIDNRLNMVDVLMKQFFEREELRELLKDVYDLER 340 Query: 377 SLSRLKIGRGEPKDIAVIRDG------IRSGINILNLFLKNDLPEELRGAVEKLKKLPQS 430 R+ G +D+ ++ I+ +N LN L E++ E+L L Sbjct: 341 LAGRVAFGNVNARDLIQLKKSLQNVPHIQEVVNRLNHPYATKLVEDI-DPCERLANL--- 396 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L L + P ++G + DG LD+ R K IASL+ + E+T I++ Sbjct: 397 ----LERGLKEHPPLSIKEGDIINDGYHEQLDQYRDASRNGKTWIASLEQQEREKTGIRS 452 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LKI +N GY+IEVT ++ +L + + + +QT++N RF T EL + E I A Sbjct: 453 LKIGYNRVFGYYIEVTRANLHLLPEGM-----YERKQTLTNAERFITPELKEKEALILEA 507 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 + +E E F + + L ++ ++ +D+ A +++E++Y +PI +S Sbjct: 508 EEKIVELEYELFLQIREEVKAYIPRLQELAKKVSELDVLQCFAKISEERHYTKPIF-SSE 566 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 + +++GRHP+VEK + +S+ ++ NDC ++ + + L+TGPNM GKST++RQ Sbjct: 567 DISIQNGRHPVVEKVM---NSQEYVPNDCQMT-----DDSSILLITGPNMSGKSTYMRQV 618 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 AL I+AQ+G +VPA A + I D++F+R+G+AD+L SG+STFMVEM+ET + + AT Sbjct: 619 ALTAILAQIGCFVPADEAVLPIFDQVFTRIGAADDLISGQSTFMVEMLETKNAVTNATQS 678 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S ++LDEIGRGT+T DG+++A A IEY+HE C+ L +TH+HELT L +SL N + Sbjct: 679 SLILLDEIGRGTSTYDGMALAQAIIEYVHEHIGCKTLFSTHYHELTVLDESLPALKNVHV 738 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK--------- 841 + N ++FLHK+ G AD SYGI V +LA LP+ ++ RA IL E+ Sbjct: 739 SAVEKNGKVVFLHKIKDGAADKSYGIHVAELAELPDPLLERARVILHDLEQSSEREPVRQ 798 Query: 842 -----------------LYHHNQKDMR-------LYYPEIQTKESKNNLSKNDKLFVEKI 877 L + D + L + EI+ K+ K LSK +K ++++ Sbjct: 799 APKREEMTQQVPQEGASLVQEERADSKKADEANQLSFFEIEEKKEKPALSKREKAIIDRL 858 Query: 878 KCLNLDEMSPLTALKTLYAVK 898 K L++ EM+PL A+ +Y ++ Sbjct: 859 KELDILEMTPLDAMNAMYELQ 879 >gi|42518561|ref|NP_964491.1| DNA mismatch repair protein [Lactobacillus johnsonii NCC 533] gi|48428289|sp|P61668|MUTS_LACJO RecName: Full=DNA mismatch repair protein mutS gi|41582846|gb|AAS08457.1| DNA mismatch repair protein MutS [Lactobacillus johnsonii NCC 533] Length = 857 Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust. Identities = 290/889 (32%), Positives = 487/889 (54%), Gaps = 48/889 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K +TPMM+QY EIK PD+ +FYR+GDFYELF DDA+ ++ L +TLT R IP Sbjct: 4 KDTTPMMKQYYEIKEQYPDAFLFYRVGDFYELFEDDAIKGAQILELTLTHRSNKTKNPIP 63 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP + Y+ L++ G+++A+CEQ+E P +AK +V+R +++L+TPGT+ ++ Sbjct: 64 MAGVPHLAVDTYVNTLVEKGYKVALCEQLEDPKKAK-----GMVKRGIIQLITPGTMMQE 118 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSE 201 + DSNYL +V + + +A+ D+STG F ++ + + ++++ + RE++++ Sbjct: 119 RPDQAKDSNYLTSVISTNSGFGLAYSDLSTGETFSTHLADFEAVANELLSLQTREVVYN- 177 Query: 202 KELSH-AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 H + F N+ V++P S +A N+T E A Sbjct: 178 ---GHLTDLNKDFLKKANITVSEPVEVEGEHAEISYVAQ--NLT--------DDAEIKAT 224 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTID 319 ++Y+ TQ + + + + L + ++NLE++++ S++ SL +D Sbjct: 225 KQLVAYLLSTQKRSLAHLQVAQSYEPTQYLQMSHTVQTNLELIKSAKTSKKMGSLFWLLD 284 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T GGRL I PL T+I R + + + + + LK D+ R Sbjct: 285 KTSTAMGGRLLKSWIERPLLSVTEITRRQEMVQALLDDYFTREKVIDSLKGVYDLERLTG 344 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G +++ + + + ILN L+ + P L+ +++ L + + + + + Sbjct: 345 RIAFGSVNAREMLQLAHSLGAIPEILNALLETNNPH-LQNFAKQIDPL-KGIHDLIVNTI 402 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 D+ P +GG +R+G LD R + K+ ++ ++ E T I NLK+ +N Sbjct: 403 VDNPPLPTTEGGLIREGVSEQLDRYRDAMNNGKKWLSEMESHEREVTGINNLKVGYNKVF 462 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IEVT+S+ S + DR+ +QT++N R+ T +L + E I A + +E Sbjct: 463 GYYIEVTNSNKSKV-----PTDRYTRKQTLTNAERYITPDLKEHEALILEAEAKSTGLEY 517 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP-IIDNSTNFIVKDGR 618 + F L + + +L ++ IA +D+ A ++++ NY RP + + V +GR Sbjct: 518 DLFVKLREDVKKYIPALQKLAKQIASLDVLTNFATVSEQNNYVRPNFVTDKQEINVVNGR 577 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ + ++ +I ND + D N ++L+TGPNM GKST++RQ ALI IMAQ Sbjct: 578 HPVVEQVM---TAGSYIPNDVKMD--QDTN---IFLITGPNMSGKSTYMRQMALIAIMAQ 629 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA A + I D++F+R+G+AD+L SG+STFMVEM E L AT +S V+ DEI Sbjct: 630 IGSFVPADSATLPIFDQIFTRIGAADDLISGQSTFMVEMSEANDALQHATKRSLVLFDEI 689 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGTAT DG+++A A ++YLH+ + L ATH+HELTDL ++LK N + ++ N Sbjct: 690 GRGTATYDGMALAGAIVKYLHDKVGAKALFATHYHELTDLDQTLKHLKNIHVGATEENGK 749 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL----YHHNQKDMRLYY 854 +IFLHK++PG AD SYGI V +LAGLP+ V+ A +LK EK + + L+ Sbjct: 750 LIFLHKILPGPADQSYGIHVAQLAGLPHKVLREATTMLKRLEKQGASELQPASEQLDLFV 809 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTLE 903 PE + S +S ++K +++I+ + L + +PL ++ V W E Sbjct: 810 PE---EASAPAISDDEKDVLDEIQNVYLADKTPLQVMEL---VAQWQQE 852 >gi|319946044|ref|ZP_08020293.1| DNA mismatch repair protein HexA [Streptococcus australis ATCC 700641] gi|319747852|gb|EFW00097.1| DNA mismatch repair protein HexA [Streptococcus australis ATCC 700641] Length = 847 Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust. Identities = 295/884 (33%), Positives = 488/884 (55%), Gaps = 57/884 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYPDAFLLFRMGDFYELFYEDAVNAAQILEISLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI+ G+++AI EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPYHSAQQYIDVLIEKGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSTK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEKEL 204 + +N+L+A++ T++ +A++D+ TG F++++ N ++ +I + REI+ + Sbjct: 121 PDSANNFLVALSHDATDYGLAYMDLVTGEFQVTSLNDFAMVCGEIRNLRAREIVLT---- 176 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS-FSQVEKTAAAAA 263 SL E V + Q N+ ISE +A+ V G+ + +E+ AA Sbjct: 177 -----YSLSEGEERVLLGQMNLLLS-PISE--VAE-----DVQLLGAELTHLERIAAGGL 223 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 + Y+++TQ I +++ L +D A +++L++ +G + SL +D S Sbjct: 224 LRYVQETQKRELHHIKPAHHYEVRDFLQMDYATKASLDLTENARTGKKHGSLYWLLDESK 283 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGRL I PL D +I R + I F+ + + + LK D+ R SR+ Sbjct: 284 TAMGGRLLRAWIQKPLMDRHRIEERQEIIQVFLDHFFERSDLADRLKGVYDIERLASRVS 343 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 G+ PKD+ + + +R I +L ++ P L + +L +LP+ L + + + + D Sbjct: 344 FGKTTPKDLLQLGETLRHVPLIKSLLVEMGEPV-LDLLIAQLDELPE-LCRLIEAAIDPD 401 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P +G +R G D +LD+ R + + IA ++ K E + I LKI +N GY+ Sbjct: 402 APIVLTEGNIIRTGFDPTLDQYRVVLREGTGWIAEIEAKEREASGITGLKIDYNKKDGYY 461 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 VT+S S + F + T+ N RF T EL +E + A + +E F Sbjct: 462 FHVTNSQLSRVPA------HFFRKATLKNSERFGTEELARIEGEMLEAREQSTSLEYAIF 515 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 + + + + L + +Q +A +D+ LA +A+ Q RP+ + + ++ GRHP+V Sbjct: 516 LRIREEVGKYIQRLQSLAQALATVDVLQGLACVAERQQLTRPVFQEARDIRIEKGRHPVV 575 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 EK + QS +I N + D + L+TGPNM GKST++RQ A+IVIMAQ+GS+ Sbjct: 576 EKVMGAQS---YIPNSISMDETCD-----IQLITGPNMSGKSTYMRQLAIIVIMAQIGSF 627 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA A + + D +++R+G+AD+L SG+STFMVEM+E + + QAT S ++ DE+GRGT Sbjct: 628 VPAQAATLPLFDAIYTRIGAADDLVSGQSTFMVEMMEANNAIRQATPASLILFDELGRGT 687 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFL 802 AT DG+++A A IEY+H+ + L ATH+HELTDL ++L R N + + + + FL Sbjct: 688 ATYDGMALAQAIIEYIHDRTGAKTLFATHYHELTDLEQTLSRLRNVHVATLEKDGQVTFL 747 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKES 862 H++ G AD SYGI V K+AGLP+ ++ RA IL E H ++ + P T+ES Sbjct: 748 HRIEEGPADKSYGIHVAKIAGLPSDLLKRADTILSQLEGQSH----EVPMATP---TQES 800 Query: 863 KNNLSKNDKLF--------VEKIKCLNLDEMSPLTALKTLYAVK 898 + + LF +E++K L++ M+P+ + + +K Sbjct: 801 SPQVGEQISLFEATSSHSVLEELKNLDIYNMTPMEVMMAVAEMK 844 >gi|56963952|ref|YP_175683.1| DNA mismatch repair protein MutS [Bacillus clausii KSM-K16] gi|81678867|sp|Q5WFY3|MUTS_BACSK RecName: Full=DNA mismatch repair protein mutS gi|56910195|dbj|BAD64722.1| DNA mismatch repair protein MutS [Bacillus clausii KSM-K16] Length = 871 Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust. Identities = 296/827 (35%), Positives = 454/827 (54%), Gaps = 52/827 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD-IPMC 84 TPMM+QY++IK+ D+ +F+R+GDFYE+F +DA+ A++ L ITLT RG+ G+D IPMC Sbjct: 6 TPMMKQYLQIKAKYQDAFLFFRLGDFYEMFNEDAIKAAQELEITLTGRGQ--GEDRIPMC 63 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H+A+ YI +LI G++IAICEQ+E P AK +V+R V +++TPGTL +L Sbjct: 64 GVPYHSADSYIARLIDKGYKIAICEQVEDPKTAK-----GVVKREVTKVLTPGTLMNSKL 118 Query: 145 LSPTDSNYLMAVARIRTE-WAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSE 201 L+ ++NYL+A A + W IA D+STG ++ L+ +I +E I Sbjct: 119 LAEKENNYLLAFASEGEDGWGIARCDLSTGESDVTLIRGGSAELLQEIAASGVKEAIAP- 177 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ-VEKTAA 260 L E L Q + E +Y + Q + K A Sbjct: 178 --------AGLEEELKAKLGEQQGFVVSYEEQEDVPKEYERL-----INHIQQPLLKRAY 224 Query: 261 AAAISYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLL 315 + Y+ TQ + + + +P S L +D A+ NLE+++TL ++ SLL Sbjct: 225 GRMLHYLLATQKQSLRHLQQVVFHP----ADSYLKMDVHAKRNLELVQTLRDKKKSGSLL 280 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 ID ++T GGRL + I PL D I R + F+++ ++ L+ D+ Sbjct: 281 AVIDQTVTAMGGRLLRQWIERPLVDRKAIAGRQAVVEAFLEHFFEREQLRDCLRQVYDIE 340 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R +R+ G +++ ++ +++ I + L E+ L +E++L Sbjct: 341 RLAARIAYGSVNARELVQLKRSLQNIPEIEATLEQVGLGGRWLNQSEQFADLVALMEQSL 400 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 DD P +GG + DG + LD R K+ IA L+ E T I++LK+ + Sbjct: 401 V----DDPPLSLTEGGLIVDGYNEELDAYRDASRNGKQWIAELEQSEREATGIRSLKVGY 456 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+IEVT ++A +L R+ +QT++N R+ T EL + E I A Sbjct: 457 NRVFGYYIEVTRANAHLL-----PDGRYERKQTLTNAERYITPELKEKEALILEADEKLA 511 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E F + + SL + I+ +D+ A +A++ Y +P I S + +K Sbjct: 512 DLEYRLFADIRKQVEAYVASLQKLAADISEMDVLAGFASVAEQNGYTKPTITESRDVAIK 571 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE +K+ S ++ ND DL+ D + L+TGPNMGGKST++RQ AL V+ Sbjct: 572 GGRHPVVETVIKRGS---YVENDIDLTGDRD-----MLLITGPNMGGKSTYMRQLALTVV 623 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+GSYVPA+ A + + D++F+R+G+AD+LASG+STFMVEM+ET L +AT S ++L Sbjct: 624 MAQIGSYVPAAEATLPLFDQIFTRIGAADDLASGQSTFMVEMLETKDALVKATPHSLILL 683 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DG+++A A IEY++ET + L +TH+HELT L+ SL N + + Sbjct: 684 DEIGRGTSTYDGMALAQAIIEYIYETIGAKTLFSTHYHELTRLADSLHTLRNVHVSAVEE 743 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 N ++FLH+VI G AD SYG+ V +LAGLP V +RA +L E L Sbjct: 744 NGTVVFLHQVIEGAADRSYGVYVAELAGLPKQVTTRAEALLTELEHL 790 >gi|307707759|ref|ZP_07644238.1| DNA mismatch repair protein MutS [Streptococcus mitis NCTC 12261] gi|307616257|gb|EFN95451.1| DNA mismatch repair protein MutS [Streptococcus mitis NCTC 12261] Length = 844 Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust. Identities = 296/883 (33%), Positives = 481/883 (54%), Gaps = 58/883 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEISLTSRNKNADNPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI+ G+++AI EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPYHSAQQYIDVLIEQGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSSK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEKEL 204 + +N+L+A+ R +++ +A++D+ TG+F ++ L+ +I + RE++ +L Sbjct: 121 PDSQNNFLVAIDRDGSQFGLAYMDLVTGVFYVTGLLDFTLVCGEIRNLKAREVVLG-YDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E + L + V + F D + +SR+A VE+ A++ + Sbjct: 180 SEEEEQILSRQMNLVLSYEKEGFEDLHLLDSRLA---------------AVEQAASSKLL 224 Query: 265 SYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 Y+ +TQM KP I Y +I+ L +D A +++L+++ SG ++ SL +D Sbjct: 225 QYVHRTQMRELNHLKPVIRY----EIKDFLQMDYATKASLDLVENARSGKKQGSLFWLLD 280 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL I PL D +I R + + F+ + + + LK D+ R S Sbjct: 281 ETKTAMGMRLLRSWIHRPLIDKERIVQRQEVVQVFLDHFFERSDLTDSLKGVYDIERLAS 340 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G+ PKD+ + + S I + + P L +E+L +P+ LE +S+ + Sbjct: 341 RVSFGKTNPKDLLQLATTLSSVPRIRAILEGMEQPA-LAYLIEQLDGIPE-LESLISAAI 398 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + + P DGG +R G D +LD+ R + + IA ++ K E + I LKI +N Sbjct: 399 APEAPHVITDGGIIRTGFDETLDKYRRVLREGTSWIAEIEAKERENSGISTLKIDYNKKD 458 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+ VT+S + F + T+ N RF T EL +E + A + +E Sbjct: 459 GYYFHVTNSQLGNVPA------HFFRKVTLKNSERFGTEELARIEGDMLEAREKSANLEY 512 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F + + + + L +Q IA +D+ +LA++A+ Q+ RP + + ++ GRH Sbjct: 513 EIFMRIREEVSKYIQRLQALAQGIATVDVLQSLAVVAETQHLIRPEFGDDSRIDIQKGRH 572 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 +VEK + Q+ +I N ++ + L+TGPNM GKST++RQ A+ IMAQM Sbjct: 573 AVVEKVMGAQT---YIPNTIQMA-----EDTSIQLITGPNMSGKSTYMRQLAMTAIMAQM 624 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPA A++ I D +F+R+G+AD+L SG+STFMVEM+E + ++ AT S ++ DE+G Sbjct: 625 GSYVPAESAYLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANNAISHATKDSLILFDELG 684 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A + IEY+HE + L ATH+HELT L SL+ N + + + + Sbjct: 685 RGTATYDGMALAQSIIEYIHEHIGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQV 744 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 FLHK+ PG AD SYGI V K+AGLP +++RA IL E + MR QT Sbjct: 745 TFLHKIEPGPADKSYGIHVAKIAGLPADLLARADKILTQLESQGTESPAPMR------QT 798 Query: 860 KESKNNLSKNDKL----FVEKIKCLNLDEMSPLTALKTLYAVK 898 +S D + ++ L++ M+P+ A+ L +K Sbjct: 799 SAVTEQISLFDTAEEHPILAELAKLDVYNMTPMQAMNVLVELK 841 >gi|225075593|ref|ZP_03718792.1| hypothetical protein NEIFLAOT_00607 [Neisseria flavescens NRL30031/H210] gi|224953015|gb|EEG34224.1| hypothetical protein NEIFLAOT_00607 [Neisseria flavescens NRL30031/H210] Length = 864 Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust. Identities = 306/891 (34%), Positives = 469/891 (52%), Gaps = 53/891 (5%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY+ IKS + D LVFYRMGDFYELF DDA+ A++ L ITLT RG+ G I M GVP Sbjct: 1 MMQQYLAIKSQHADKLVFYRMGDFYELFLDDAVEAAKLLDITLTTRGQMDGVPIKMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A Y+ +L+K+G +A+CEQ+ + K V R VVR+VTPGTLT+ L Sbjct: 61 FHAAEQYLARLVKMGKSVAVCEQV-----GEVGAGKGPVERKVVRIVTPGTLTDAAFLED 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHA 207 ++N + AV + AIAW + +G FK + D+L ++ R+ EI+ E + Sbjct: 116 KETNRIAAVNADKKNVAIAWASLQSGEFKTKLTTADKLADELARLQAAEILLPEGKSLPD 175 Query: 208 EYKSLFETLGNVA--VAQPNVF-FDHSISESRIADYYNITTVDTFG---SFSQVEKTAAA 261 ++ G + + + N + F + +Y+ + FG + AA Sbjct: 176 GFQGAQPARGTTSANITRLNSWQFAADAGAKLLTEYFGCQDLHGFGLDGKEHEAAVGAAG 235 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 A ++YI+ TQ + + E + +D+A R NLEI +TLSG + +L +D Sbjct: 236 ALLNYIRLTQNLMPQHLDGLSLETDSQYIGMDAATRRNLEITQTLSGKKSPTLFSILDGC 295 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G RL A + PL I R +++ +Q LK+ D+ R +R+ Sbjct: 296 ATHMGSRLLALWLHHPLRSRAHIRARQEAVAALGSQ---YETLQGRLKNIADIERIAARI 352 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL-PQSL--EKTLSSM 438 +G P+D+A +RD + + I +L E +E LK + P++L +TL + Sbjct: 353 AVGNARPRDLAALRDSLFALSEI-------ELSAEGSSLLETLKAVFPETLPVAETLKAA 405 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + + + +DGG + G A LDE R +++ + L+ + E T + LK++ N Sbjct: 406 VMPEPAVWLKDGGVINQGYCAELDELRHIQNHGDEFLLELEARERERTGLSTLKVEFNRV 465 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 G++IE++ A D + RQT+ N RF T EL E+++ A AL +E Sbjct: 466 HGFYIELSKVQAEQAPAD------YQRRQTLKNAERFITPELKTFEDKVLTAQEQALALE 519 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 FE L + L A++ A +D+ A +A E+ + RP + +++GR Sbjct: 520 KRLFEALLKEVQTALPQLQKAAKAAAALDVLSTFAAIAAERGFVRPEFADYPVIHIENGR 579 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ ++ F AN DL N K+ +L LLTGPNMGGKST++RQ ALI+++A Sbjct: 580 HPVVEQQVRH-----FTANHTDL---NHKH--RLILLTGPNMGGKSTYMRQVALIILLAH 629 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 G +VPA A IG +D++F+R+G++D+LAS RSTFMVEM ETA IL+ AT QS V++DE+ Sbjct: 630 TGCFVPADAAQIGPIDQIFTRIGASDDLASNRSTFMVEMSETAYILHYATEQSLVLMDEV 689 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGL++A A E+L + N+ L ATH+ ELT L ++ N L + Sbjct: 690 GRGTSTFDGLALAQAIAEHLLQKNKSFSLFATHYFELTRLPETCAAAVNMHLSALEQGRD 749 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY--YPE 856 I+FLH++ PG A SYGI V KLAGLP + A L E N+ + ++ P Sbjct: 750 IVFLHQIQPGPAGKSYGIAVAKLAGLPGRALKAAQKYLDELESQAAANRSQLDIFSTMPS 809 Query: 857 IQTKESK---------NNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ + +NL N+ E + + D ++P AL LY +K Sbjct: 810 ENREDEEEKEQEVEPVDNLQTNE--LAEALAQIQPDNLTPREALDALYRLK 858 >gi|329118372|ref|ZP_08247081.1| DNA mismatch repair protein MutS [Neisseria bacilliformis ATCC BAA-1200] gi|327465596|gb|EGF11872.1| DNA mismatch repair protein MutS [Neisseria bacilliformis ATCC BAA-1200] Length = 939 Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust. Identities = 311/923 (33%), Positives = 478/923 (51%), Gaps = 83/923 (8%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM+QY+ IK+ +PD LVFYRMGDFYE+FFDDA+ A++ L ITLT RG+ G+ + M G Sbjct: 54 SPMMQQYLGIKADHPDKLVFYRMGDFYEMFFDDAVEAAKLLDITLTSRGQVNGEPVKMAG 113 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ +L+K+G +A+CEQ+ + K V R VVR+VTPGTLT+ LL Sbjct: 114 VPYHAAEQYLARLVKMGKSVAVCEQV-----GEVGAAKGPVARKVVRIVTPGTLTDSALL 168 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 ++N + AV + +AW + +G FK+ + +RL ++ R+ EI+ + Sbjct: 169 EDKEANRIAAVCADKKRLGLAWASLQSGEFKVKMTTPERLADELARLQAAEILLPDG--- 225 Query: 206 HAEYKSLFETLG-NVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQVEKT---AA 260 KS + L + + N + F + Y+ + FG + AA Sbjct: 226 ----KSAPQNLPRETNITRLNSWQFAADSGFDLLTRYFGAQDLRGFGLDPEEHAPAIGAA 281 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 A ++YIK TQ + E + +D+ R NLEI +T+SG + +L +D Sbjct: 282 GALLNYIKLTQSELPRHLDGLSLESESQYVGMDATTRRNLEITQTISGKKSPTLFSVLDR 341 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 T G RL A + +PL + I R D++ + I LK+ D+ R +R Sbjct: 342 CQTHMGSRLLALWLHNPLRNRDHIAARQDAVAALLAEG--AADIAGRLKNLSDIERIAAR 399 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + +G P+D+A G+R + IL +P ++ LK + E+ + + Sbjct: 400 IAVGTARPRDLA----GLRESLAIL-----PSIPLPASALLDTLKNIFPEGERIAEKIRA 450 Query: 441 DDLP---TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 LP + R+GG + G LDE R +++ + L+ + E T + LK+++N Sbjct: 451 AILPEPAVWLREGGVINHGHCPELDELRHIQNHGGEFLLDLEARERERTGLTTLKVEYNR 510 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 G++IE++ + A+ D + RQT+ N RF T EL E+++ A +AL + Sbjct: 511 VHGFYIELSKAQAAQAPAD------YQRRQTLKNAERFITPELKTFEDKVLGAQEAALAL 564 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + ++ L + + L ++ A +D+ A A A E+ YCRP + DG Sbjct: 565 EKKLYDQLLKDLQNELPLLQKTAKAAAALDVLAAFAAQAAERGYCRPQFAAYPCIDISDG 624 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP++E+ ++ F AN L +DK+ +L LLTGPNMGGKST++RQ ALIV+MA Sbjct: 625 RHPVIEQQVRH-----FTANHTRL---DDKH--RLMLLTGPNMGGKSTYMRQTALIVLMA 674 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 GS+VPA+ A IG D++F+R+G++D+L++ RSTFMVEM ETA IL AT QS V++DE Sbjct: 675 HTGSFVPAAAALIGPTDRIFTRIGASDDLSANRSTFMVEMSETACILRHATAQSLVLMDE 734 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGT+T DGL++A AT +L + NR L ATH+ ELT L ++L N L + Sbjct: 735 IGRGTSTFDGLALAQATACHLAQKNRAFALFATHYFELTALPETLPSAFNMHLSALEEGR 794 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY-------------- 843 I+FLH+V PG SYGI V KLAGLP ++ A L+ E Sbjct: 795 DIVFLHRVEPGPTGKSYGIAVAKLAGLPAAALNAAQKQLERLEAQAAAARPQLDIFSLLP 854 Query: 844 -------HHNQKDMR---------LYYPEIQTKESKNNLSK------NDKLFVEKIKCLN 881 H Q D+ L+ P + E+ S+ N + + + + Sbjct: 855 EERPSEKEHGQTDLSDGANSLSDGLHTPAAENPENTKRPSENTPPNPNSETLIRTLADIR 914 Query: 882 LDEMSPLTALKTLYAVKAWTLEK 904 DE++P AL +Y +KA + EK Sbjct: 915 PDELTPRQALDLIYRLKALSSEK 937 >gi|332704146|ref|ZP_08424234.1| DNA mismatch repair protein mutS [Desulfovibrio africanus str. Walvis Bay] gi|332554295|gb|EGJ51339.1| DNA mismatch repair protein mutS [Desulfovibrio africanus str. Walvis Bay] Length = 884 Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust. Identities = 304/911 (33%), Positives = 477/911 (52%), Gaps = 61/911 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM QY+ IK PD+L+FYRMGDFYE+FF+DA +A+R L I LT R + +PMCG Sbjct: 8 TPMFEQYLGIKQEYPDALLFYRMGDFYEVFFEDAQIAARELQIALTSRNPNSETKVPMCG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+ + Y+ +L++ G+R+AIC+Q+E P +AK LVRR V R++TPGT+ ED L Sbjct: 68 VPHHSVDGYLTQLLEKGYRVAICDQVEDPKQAK-----GLVRRAVTRVLTPGTVIEDANL 122 Query: 146 SPTDSNYLMAVARIRTEW-------AIAWIDISTGIFK-ISTSNHDRLISDIMRIDPREI 197 + NYL A+ W A+AW+D STG + +++ + L ++ PRE+ Sbjct: 123 ASKSHNYLAALW-----WDADKGAGALAWVDFSTGEWSGLASRRAEILWQWTAKLGPREL 177 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE- 256 + L H E V FD + + + + + + E Sbjct: 178 LLP---LGHEVLPHYAEAAKQVNRLPALPAFDLAAARRELPKVLGVADLSVLDLEDKPEL 234 Query: 257 KTAAAAAISYIKKTQMVNK-PTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 A + Y+++TQ ++ +G ++ L +D NLE+ R L G + L Sbjct: 235 ARCCGALLCYLRQTQRHDELGHLGAFRPLNLGDHLILDEVTERNLELFRRLDGKTGRGTL 294 Query: 316 K-TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 + +D ++T GGRL R+ P I +++ + ++ L+ D+ Sbjct: 295 RHVLDETMTAMGGRLLESRLRQPWRMLAPILATQEAVAWLFAEDEQRGRLRMALERVYDL 354 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLK--NDLPEELRGAVEKLKKLPQSLE 432 R +R+ +GR PKD +R+ + + + DLP E + L + + Sbjct: 355 ERLSTRVFLGRAAPKDYLALRESLAVLPEVRQALVSTGGDLPTEAAKILSAWDDL-EDIR 413 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 L+ LSD+ P +GG + G D+ LDE L + + + L E + L+ Sbjct: 414 DLLNRALSDNPPPVITEGGLFKPGFDSELDELLELSEHGEAKLKELLEVEQRENDLPKLR 473 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 + +N GY++E++ ++ + + FI RQT++N R+ T L +LE +I +A Sbjct: 474 LGYNRVFGYYLELSKAAHD------RAPEHFIRRQTLANAERYVTPALKELEEKILSAAE 527 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 +E + F+ L + + ++ +A +D ++A +A+ + RP + Sbjct: 528 ILKSLEYKLFQKLRETVAKARPRFMVMAEALATLDYWQSMAEVARRNEWLRPRLHEGLEL 587 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLS--CPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 ++ GRHP+VE+ Q FI ND L C +L L+TGPNM GKST LRQ+ Sbjct: 588 RIRGGRHPVVEQV---QGRGNFIPNDLRLDEFC-------RLMLITGPNMAGKSTILRQS 637 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 A+I IMAQMGSYVPAS A IG+VD++FSRVG++DNLA G+STFMVEM+ETA IL QAT + Sbjct: 638 AIICIMAQMGSYVPASEADIGLVDRVFSRVGASDNLAQGQSTFMVEMMETARILRQATMR 697 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNA 788 S VILDEIGRGT+T DGL++AWA +E + R L ATH+HELT L + N Sbjct: 698 SLVILDEIGRGTSTFDGLALAWAVVEEFARRGKGAIRTLFATHYHELTALEGRIPGVRNY 757 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 T+ + + IIFL +++PG +D SYGI+V +LAG+P++V+ RA +IL E+ + Sbjct: 758 TVAIKEWKGDIIFLRRLVPGPSDRSYGIEVARLAGVPDSVVRRAREILSELERAKSGDAT 817 Query: 849 ------DMRLYYPEIQTKESKNNLSKN--DKLFVEKIKCLNLDEMSPLTALKTLYAVKAW 900 + P + K SK + + +++++ + +D ++PL AL L + W Sbjct: 818 VSPRTLSCQTLLPGMGGKPSKVTATAKAAEHPLIQELREIKVDRLTPLEALNLL---QTW 874 Query: 901 TLEKYSTDEDS 911 K DE+S Sbjct: 875 ---KNRIDEES 882 >gi|313901800|ref|ZP_07835223.1| DNA mismatch repair protein MutS [Thermaerobacter subterraneus DSM 13965] gi|313467920|gb|EFR63411.1| DNA mismatch repair protein MutS [Thermaerobacter subterraneus DSM 13965] Length = 907 Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust. Identities = 311/867 (35%), Positives = 465/867 (53%), Gaps = 81/867 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY E K PD ++F+R+GDFYE+F DDA LA+R L ITLT R G+ +PMCG Sbjct: 16 TPMMRQYREWKERYPDCILFFRLGDFYEMFGDDARLAARILDITLTSRETAKGERVPMCG 75 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H + Y+ +L++ G+R+AICEQ+E P R + LVRR VVR+VTPGTL Sbjct: 76 VPYHAVDQYLPRLVEAGYRVAICEQVEDP-----RLARGLVRREVVRVVTPGTLWSAA-- 128 Query: 146 SPTDSNYLMAVA-------------RIRTE------------------WAIAWIDISTGI 174 +S Y+ A+A R+ +A+ D+STG Sbjct: 129 GRDESRYVAALALDPDPATRPAGNGRVPAPQPAGSGLETGSAAGAPRVLGLAYADVSTGE 188 Query: 175 FKISTSNHD---RL-ISDIMRIDPREIIFS---EKELSHAEYKSLFETLGNVAVAQPNVF 227 F I+ D RL + ++ R+ E + E + ++L E + + + Sbjct: 189 FTIAQLAGDDPLRLALDELARLQAAECLLGPGLEGPGAAGLEQTLRERGCTLTRTEAGPW 248 Query: 228 FDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQ 287 + + A + +A ++Y++ TQ V+ + + + Sbjct: 249 RLREAAAALAAQFGRPAVDQARAETGAAALSAGGGLLAYLRATQKVDLEHLRRLRTDALG 308 Query: 288 STLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINT 346 L ID+ +R NLE++R L GSR+ +LL +D + T G RL + I PL D I+ Sbjct: 309 QWLAIDANSRRNLELVRRLRDGSRQGTLLDVLDLTETAMGRRLLRQWIERPLVDPAAISA 368 Query: 347 RLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILN 406 RLD++ +++P L +++ L D+PR L R+ + +D+ GI + L Sbjct: 369 RLDAVEALVRDPFLRAGLRQQLAGMQDLPRLLGRVGYQQANARDLL----GIARALERLP 424 Query: 407 LFLKNDLPEELRGAVE-----KLKKLPQSLEKTLSSM-------LSDDLPTFKRDGGFLR 454 +L +L GA +L+ + Q+L+ L+ + L DD PT +GG +R Sbjct: 425 -----ELAAQLEGAARAGPLGRLEAVRQALDPQLAGLAARLRGALVDDPPTGITEGGLIR 479 Query: 455 DGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLK 514 DG +D R Q + IA+L+ + E T IK+LK+ N GYFIEVT ++ ++ Sbjct: 480 DGFHPEVDALRQAMAQGRHWIAALEARERERTGIKSLKVGFNKVFGYFIEVTRANRHLVP 539 Query: 515 KDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSE 574 D E RQT++ RF T EL +E+RI A +E + F L + Sbjct: 540 PDYE------RRQTLAGAERFVTPELKAMESRILGAEERLAALEHQLFLELRQEVAAAIP 593 Query: 575 SLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPF 634 L + +A +D+ ALA A Y RP + +K GRHP++++TL+ + F Sbjct: 594 QLQATADALAELDVLAALAEAAARYGYVRPKLAADRRLRIKAGRHPVLDRTLEGR----F 649 Query: 635 IANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVD 694 + ND DL D ++ L+TGPNM GKSTF+RQ ALIVIMAQMGS+VPA+ A IG+VD Sbjct: 650 VPNDIDL----DGEEERVMLITGPNMAGKSTFMRQVALIVIMAQMGSFVPAAEAEIGLVD 705 Query: 695 KLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWAT 754 ++F RVG++D+LASG+STFMVE+ ETA ++ AT +S ++LDEIGRGT+T DG++IA A Sbjct: 706 RIFCRVGASDDLASGQSTFMVEVAETALAVHHATPRSLILLDEIGRGTSTFDGIAIARAV 765 Query: 755 IEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSY 814 IEY+H+ R L++TH+HELT L+ + N +V + +GI FL ++ PG AD SY Sbjct: 766 IEYIHDRIGARTLVSTHYHELTGLAATRPGIRNYHARVVEEGDGIRFLWRIAPGGADRSY 825 Query: 815 GIQVGKLAGLPNTVISRAYDILKTFEK 841 GI V +LAGLP ++ RA IL ++ Sbjct: 826 GINVARLAGLPVEIVERAKAILAELDR 852 >gi|315037642|ref|YP_004031210.1| DNA mismatch repair protein MutS [Lactobacillus amylovorus GRL 1112] gi|325956127|ref|YP_004286737.1| DNA mismatch repair protein MutS [Lactobacillus acidophilus 30SC] gi|312275775|gb|ADQ58415.1| DNA mismatch repair protein MutS [Lactobacillus amylovorus GRL 1112] gi|325332692|gb|ADZ06600.1| DNA mismatch repair protein MutS [Lactobacillus acidophilus 30SC] Length = 866 Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust. Identities = 276/820 (33%), Positives = 452/820 (55%), Gaps = 36/820 (4%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S+TPMM QY EIK PD+ +FYR+GDFYELF DDA+ ++ L +TLT R IPM Sbjct: 5 STTPMMEQYYEIKKQYPDAFLFYRVGDFYELFEDDAVKGAQILELTLTHRSNKTKNPIPM 64 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP + Y+ L++ G+++A+CEQ+E P +AK +V+R +++LVTPGT+ + Sbjct: 65 AGVPHLAVDTYVNTLVEKGYKVALCEQLEDPKKAK-----GMVKRGIIQLVTPGTMMNEG 119 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEK 202 DSNYL +V ++ + +A+ D+STG I+ + + + ++++ + RE++++ Sbjct: 120 PNDAKDSNYLTSVVTTKSGFGLAYSDLSTGEIYATHLKSFEAVSNELLSLRTREVVYNG- 178 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 E F N+ V+ P S + N+T ++ EK A Sbjct: 179 --PLTEQNKDFMHKANITVSAPTPIEGEHAEISYVEQ--NLT--------NKAEKEATRQ 226 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYS 321 + Y+ TQ + + + ++ L + ++NLE++ + +G + SL +D + Sbjct: 227 LVGYLLSTQKRSLAHLQIAKSYEVNQYLQMSHTVQNNLELVASAKTGKKMGSLFWVLDKT 286 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T GGRL + +A PL + +IN R + + + LK D+ R R+ Sbjct: 287 HTAMGGRLLKQWLARPLLNVDEINHREEMVQALLDGYFTRENAIDALKGVYDLERLTGRI 346 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 G +++ + +++ IL+ ++D + L +K+ L + + + +S+ L Sbjct: 347 AFGNVNARELLQLSRSLQAVPVILDALNQSD-SQVLEDFAQKIDPL-KGVAEMISTTLVK 404 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 D P +GG +R+G D LD + + K+ +A ++ ++T I NLK+ +N GY Sbjct: 405 DPPILTTEGGLIREGVDKQLDRYKDAMNNGKKWLAQMEADERQKTGIDNLKVGYNKVFGY 464 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +I+V++ + S + DR+ +QT++N R+ T EL + EN I A + +E + Sbjct: 465 YIQVSNGNKSKV-----PLDRYTRKQTLTNAERYITPELKEHENLILEAQTRSTDLEYDL 519 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI-VKDGRHP 620 F L + + +L +A +D+ A +A++ NYCRP I V +GRHP Sbjct: 520 FVKLREEVKKYIPALQKLGGQLAALDVYCGFATVAEQNNYCRPHFHTDNQDIDVVNGRHP 579 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + ++ +I ND + + ++L+TGPNM GKST++RQ ALI IMAQ+G Sbjct: 580 VVEKVM---TAGSYIPNDVKMDSATN-----IFLITGPNMSGKSTYMRQMALIAIMAQVG 631 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA A + I D++F+R+G+AD+L SG+STFMVEM E L AT +S V+ DEIGR Sbjct: 632 SFVPADSADLPIFDQIFTRIGAADDLISGQSTFMVEMSEANDALQYATKRSLVLFDEIGR 691 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A ++YLH+ + L ATH+HELT L ++L N + ++ N +I Sbjct: 692 GTATYDGMALAGAIVKYLHDKVGAKALFATHYHELTALDETLDHLKNIHVGATEENGKLI 751 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 FLHK++PG AD SYGI V +LAGLP V+ A +LK E Sbjct: 752 FLHKILPGPADQSYGIHVAQLAGLPRAVLREATKLLKRLE 791 >gi|300362260|ref|ZP_07058436.1| DNA mismatch repair protein MutS [Lactobacillus gasseri JV-V03] gi|300353251|gb|EFJ69123.1| DNA mismatch repair protein MutS [Lactobacillus gasseri JV-V03] Length = 857 Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust. Identities = 289/890 (32%), Positives = 488/890 (54%), Gaps = 50/890 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K +TPMM+QY EIK PD+ +FYR+GDFYELF DDA+ ++ L +TLT R IP Sbjct: 4 KDTTPMMKQYYEIKEQYPDAFLFYRVGDFYELFEDDAVKGAQILELTLTHRSNKTKNPIP 63 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP + Y+ L++ G+++A+CEQ+E P +AK +V+R +++L+TPGT+ ++ Sbjct: 64 MAGVPHLAVDTYVNTLVEKGYKVALCEQLEDPKKAK-----GMVKRGIIQLITPGTMMQE 118 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSE 201 + DSNYL +V + + +A+ D+STG F ++ + + ++++ + RE++++ Sbjct: 119 RPDQAKDSNYLTSVISTNSGFGLAYSDLSTGETFSTHLTDFEGVANELLSLQTREVVYN- 177 Query: 202 KELSH-AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 H E F N+ +++P S +A N+T E A Sbjct: 178 ---GHLTEANKDFLKKANITISEPVKVESEHAEISYVAQ--NLT--------DDAEIKAT 224 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTID 319 ++Y+ TQ + + + + L + ++NLE++++ S++ SL +D Sbjct: 225 KQLVAYLLSTQKRSLAHLQVAQSYEPTQYLQMSHTVQTNLELIKSAKTSKKMGSLFWLLD 284 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T GGRL I PL T+IN R + + + + + LK D+ R Sbjct: 285 KTSTAMGGRLLKSWIERPLLSVTEINRRQEMVQALLDDYFTREKVIDSLKGVYDLERLTG 344 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G +++ + + + +ILN L+ + P L+ +++ L + + + + + Sbjct: 345 RIAFGSVNAREMLQLAHSLGAIPDILNSLLETNNPH-LQNFAKQIDPL-KGIHDLIVNTI 402 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 D+ P +GG +R+G LD R + K+ ++ ++ E T I NLK+ +N Sbjct: 403 VDNPPLLTTEGGLIREGVSDQLDRYRDAMNNGKKWLSEMESHEREVTGINNLKVGYNKVF 462 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IEVT+S+ KD DR+ +QT++N R+ T EL + E+ I A + +E Sbjct: 463 GYYIEVTNSN-----KDKVPTDRYTRKQTLTNAERYITPELKEHESLILEAEAKSTGLEY 517 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP--IIDNSTNFIVKDG 617 + F L + + +L ++ +A +D+ I A ++++ NY RP +D +V +G Sbjct: 518 DLFVKLRENVKKYIPALQKLAKQVASLDVLIDFATVSEQNNYVRPDFTVDKQEINVV-NG 576 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ + ++ +I ND + D ++L+TGPNM GKST++RQ ALI IMA Sbjct: 577 RHPVVEQVM---TAGSYIPNDVKMDQDTD-----IFLITGPNMSGKSTYMRQMALIAIMA 628 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+G +VPA A + I D++F+R+G+AD+L SG+STFMVEM E L AT +S ++ DE Sbjct: 629 QIGCFVPADSATLPIFDQIFTRIGAADDLISGQSTFMVEMSEANDALQHATKRSLILFDE 688 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGTAT DG+++A A ++YLH+ + L ATH+HELTDL ++LK N + ++ N Sbjct: 689 IGRGTATYDGMALAGAIVKYLHDKVGAKTLFATHYHELTDLDQTLKHLKNIHVGATEENG 748 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL----YHHNQKDMRLY 853 +IFLHK++PG AD SYGI V +LAGLP V+ A +LK E+ + + L+ Sbjct: 749 KLIFLHKILPGPADQSYGIHVAQLAGLPRKVLREATTMLKRLEQQGAGELQPASEQLDLF 808 Query: 854 YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTLE 903 E + S+ +S ++K ++ I+ + L + +PL ++ V W E Sbjct: 809 TAE---EASEPAISDDEKDVLDDIQNVYLADKTPLQVMEL---VSQWQQE 852 >gi|172057081|ref|YP_001813541.1| DNA mismatch repair protein MutS [Exiguobacterium sibiricum 255-15] gi|229486461|sp|B1YMD7|MUTS_EXIS2 RecName: Full=DNA mismatch repair protein mutS gi|171989602|gb|ACB60524.1| DNA mismatch repair protein MutS [Exiguobacterium sibiricum 255-15] Length = 843 Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust. Identities = 302/897 (33%), Positives = 491/897 (54%), Gaps = 85/897 (9%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLT-KRGKHLGKDIPM 83 +TPMM+QY IK+ PD+ +FYR+GDFYELFF+DA + L +TLT K GK+ IPM Sbjct: 6 NTPMMKQYFSIKADYPDAFLFYRLGDFYELFFEDAKQVAHELELTLTAKNGKNAEHPIPM 65 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVP H AN YI++LI+ G+++A+C+Q+E P + K LV+R VV+++TPGTL Sbjct: 66 CGVPHHAANGYIEQLIERGYKVALCDQVEDP-----KLTKGLVKREVVQVITPGTLMSS- 119 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSEK 202 L+ ++ YL+AV + IA D+STG + S + D + ++ I PREI+ + Sbjct: 120 -LTEKENRYLVAVVEQDGRFGIARGDVSTGESALTSVATLDAVAKELSIILPREIVVTSS 178 Query: 203 E----LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 E LSH + + + Q H + I + D F Sbjct: 179 EHEAALSHLQ----------IPLTQSTRRETHPHGDRAI----DAAQADAF--------- 215 Query: 259 AAAAAISYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQS 313 A +Y+ TQ + +P I Y + +Q ++ NLE++R+ +G ++ S Sbjct: 216 --AVLYAYMHDTQKRSLAHLQPAIVYEAADFMQ----LEPNTVKNLELVRSARTGDKKGS 269 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T GGR+ + PL I RLD++ + + ++ L+ D Sbjct: 270 LLGLLDVTGTAMGGRMLKRWLEKPLLSQHTIAERLDAVEELLAHYFERQQLKDTLREVYD 329 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKL--KKLPQ-- 429 + R ++++ G +D+ ++ +R L ++ A+E+L +L Q Sbjct: 330 LERLVAKVGYGTASARDLVQLKSTLR-------------LIPRIQAALEELFSDRLGQLA 376 Query: 430 -------SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + P +DGG +R G D +LDE K +A+L+ Sbjct: 377 LGLDPHDELTDLLDRAFVEAPPISTKDGGMIRTGFDPALDELLVASKDGKTWLATLEASE 436 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 + T IK LKI +N GY+IEV+ ++A +L + R+ +QT++N R+ T EL + Sbjct: 437 RQATGIKTLKIGYNRVFGYYIEVSRANAKLL-----PEGRYERKQTLANAERYVTPELKE 491 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E I A ++ +E E F + + + ESL S+ IA +D+ +ALA A+ +Y Sbjct: 492 KEALILGAEEKSITLEYELFCQVRDQVKTHIESLQRVSRRIAELDVLVALAETAERHDYV 551 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 RP+ N ++++GRHP++E L + ++AN +L+ D+ ++ L+TGPNM G Sbjct: 552 RPVTLTGRNVMIENGRHPVIETVLPRGE---YVANGINLN--EDR---EMLLITGPNMSG 603 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI ++ Q+GS+VPAS A + I D++F+R+G+AD+L SG+STFMVEM+ET Sbjct: 604 KSTYMRQFALIALLHQIGSFVPASRAELPIFDQIFTRIGAADDLVSGQSTFMVEMVETQE 663 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 L +AT++S ++LDEIGRGT+T DG+++A A +E++ E + L +TH+HELT L S+ Sbjct: 664 ALTRATDRSLILLDEIGRGTSTYDGMALAQAIVEHIAEHVGAKTLFSTHYHELTVLEDSM 723 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 R N ++ + + ++FLH+V G AD SYGI V +LA LP+ +I+RA +L FE+ Sbjct: 724 PRLANVHVRAVEQDGRVVFLHEVRDGKADQSYGIHVARLADLPDALIARAEVLLSEFEQT 783 Query: 843 YHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + + + + + ++ D + E ++ L+L M+PL AL TLY ++A Sbjct: 784 EERTVVSPKEPVVQAEPVDQLSLFAETDPVR-ETVQTLDLINMTPLEALNTLYRLQA 839 >gi|242373588|ref|ZP_04819162.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis M23864:W1] gi|242348951|gb|EES40553.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis M23864:W1] Length = 876 Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust. Identities = 324/919 (35%), Positives = 490/919 (53%), Gaps = 101/919 (10%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPMM+QY++IKS D L+F+R+GDFYE+FF+DA ASR L ITLTKR I Sbjct: 5 MANVTPMMQQYLKIKSEYDDCLLFFRLGDFYEMFFEDAKEASRVLEITLTKRDAKKENPI 64 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A+ YI+ LI G+++AICEQ+E P + K +V+R VVR+VTPGT+ E Sbjct: 65 PMCGVPYHSADSYIETLINNGYKVAICEQMEDP-----KQTKGMVKREVVRIVTPGTVME 119 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFS 200 + +NY+++ + +A+++ D+STG K + + L+++I I+P EI+ + Sbjct: 120 QGGVDEKQNNYILSFVKDEV-YALSYCDVSTGELKATHFQDEATLLNEITTINPNEIVVN 178 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYN---ITTVDTFGS------ 251 E EL + + T V V + +ISE + YN +T F S Sbjct: 179 E-ELPEELKRQISMTTETVTVRE-------NISEMQ----YNTNKLTHNQMFKSTQLLLD 226 Query: 252 ---------FSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEI 302 S +E+ A AAI ++K +D A+ NLE+ Sbjct: 227 YIHHTQKRDLSHIEEVAEYAAIDFMK-----------------------MDFYAKRNLEL 263 Query: 303 LRTLS-GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILI 361 ++ S++ +LL +D + T G R + + PL + +IN RL+ + FI I Sbjct: 264 TESIRLKSKKGTLLWLMDETKTPMGARRLKQWVDRPLINKNQINERLNIVEEFINRFIER 323 Query: 362 NPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAV 421 + ++ L D+ R + R+ G +D+ ++ I NI L N+L + Sbjct: 324 DTLRNYLNQVYDIERLVGRVSYGNVNARDLIQLKHSISEIPNIKALL--NELDAQTTSQF 381 Query: 422 EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLK 481 +L+ L LE S++ + P +DGG + G + LDE K +A LQ K Sbjct: 382 SELEPLDDLLELLEESLVEE-PPISVKDGGLFKTGFNEQLDEYLEASKNGKTWLAELQAK 440 Query: 482 YAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELI 541 T IK+LKI N GYFIE+T ++ + S+ + +QT+SN RF T EL Sbjct: 441 ERARTGIKSLKISFNKVFGYFIEITRANLQGFEP---SEFGYNRKQTLSNAERFITDELK 497 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 + E+ I A + A+ +E + F L I +E L +++I+ +D + A +A++ NY Sbjct: 498 EKEDIILGAEDKAIELEYQLFVKLREHIKTYTERLQKQAKIISELDCLQSFAEIAQKYNY 557 Query: 602 CRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 RP + +++ RHP+VE+ + ++ NDC+L N ++L+TGPNM Sbjct: 558 VRPSFSDDKTLKLENSRHPVVERVMDHND---YVPNDCNLD-----NDTFIYLITGPNMS 609 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKST++RQ A+I IMAQMG+YVP A + + D++F+R+G+AD+L SG+STFMVEM+E Sbjct: 610 GKSTYMRQVAIISIMAQMGAYVPCDSAVLPVFDQIFTRIGAADDLVSGKSTFMVEMLEAQ 669 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS 781 L AT S +I DEIGRGT+T DGL++A A IEY+ +T+ + L +TH+HELT L + Sbjct: 670 KALTYATENSLIIFDEIGRGTSTYDGLALAQAMIEYVAQTSHAKTLFSTHYHELTSLDQM 729 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 L N + ++ +IFLHKV G D SYGIQV KLA LP VI+RA IL FE+ Sbjct: 730 LPCLKNVHVAANEYKGELIFLHKVKDGAVDDSYGIQVAKLADLPEEVINRAQIILDEFEQ 789 Query: 842 ----LYHHNQKDMRLYYPEIQTKESKNNL-------SKND------KLF--------VE- 875 N+ + + T ES N++ SKND LF +E Sbjct: 790 KPSGQIMPNELSQDNHEGRLSTNESNNSINAEKTINSKNDFEQASFDLFENNDQQSEIEL 849 Query: 876 KIKCLNLDEMSPLTALKTL 894 +IK LNL M+P+ AL L Sbjct: 850 EIKNLNLSNMTPIEALVKL 868 >gi|149369766|ref|ZP_01889618.1| DNA mismatch repair protein [unidentified eubacterium SCB49] gi|149357193|gb|EDM45748.1| DNA mismatch repair protein [unidentified eubacterium SCB49] Length = 900 Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust. Identities = 296/895 (33%), Positives = 495/895 (55%), Gaps = 49/895 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TP+M+QY IK+ PD+L+ +R+GDFYE F DA+ A+ L ITLT R G+ Sbjct: 24 KKVTPLMKQYNAIKAKYPDALLLFRVGDFYETFGADAVKAAGILNITLTARNNG-GEQTE 82 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 + G P H+ N Y+ KL+ G R+AIC+Q+E P + K++V+R V LVTPG D Sbjct: 83 LAGFPHHSLNTYLPKLVMAGCRVAICDQLEDP-----KMTKTIVKRGVTELVTPGVALND 137 Query: 143 QLLSPTDSNYLMAV---------ARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRID 193 +L +N+L AV + +A++DISTG F S N + + + + Sbjct: 138 DILQSKSNNFLAAVHFGPSTGSGTQKNQRIGVAFLDISTGEFLTSEGNAEYIDKLLQNFN 197 Query: 194 PREIIFSEKELSHAEYKSLF-ETLG-NVAVAQ-PNVFFDHSISESRIADYYNITTVDTFG 250 P E++FS+++ + LF ET G N V + F ++ + +N + FG Sbjct: 198 PSEVLFSKQK------RKLFSETFGDNFHVFHLEDWVFQKDYTDETLNKQFNTKNLKGFG 251 Query: 251 SFSQVEK--TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG 308 +E+ A+ AA+ Y+ +TQ I R +++D NLE+ + S Sbjct: 252 -IDHLEQGIIASGAALHYLSETQHNKLEHITRIARIAEDEFVWMDRFTIRNLELYHS-SN 309 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKIL 368 +LL ID +I+ GGR+ +A PL + I R + +++ +Q +++ I+ + Sbjct: 310 QNAVTLLDVIDKTISPMGGRMLKRWMALPLKNVETITRRHEVVSYLLQENQVLDKIKTNI 369 Query: 369 KSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP 428 K D+ R +S++ G+ P+++ +++ + + + + + ++ E L+ +L++ Sbjct: 370 KRIGDLERLISKVATGKISPREVIQLKNSLEAVVPVKKISETSE-NESLKILGSQLQEC- 427 Query: 429 QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 + L + + + ++ P G + G LDE R++ K + + + E T I Sbjct: 428 EVLRNKIKATIHEEAPVNIVKGNAIASGFHPELDELRAIATGGKEYLDKMLARETERTGI 487 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 +LKI NN GY+IEV ++ + + ++ +QT+ N R+ T EL + E +I Sbjct: 488 TSLKIASNNVFGYYIEVRNTHKDKVPTE------WVRKQTLVNAERYITEELKEYEAKIL 541 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 A +E E F L +I+ + +++IA +D + A A + NY RP+ D Sbjct: 542 GAEEKIGALEQEIFVKLIQWMIQFIGPVQQNAKLIAELDCLGSFATQAADANYVRPLFDE 601 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 +T+ +K+GRHP++EK L + PFI+ND L D+ ++ ++TGPNM GKS LR Sbjct: 602 TTDLDIKEGRHPVIEKQLPPDA--PFISNDVFL----DREHQQIIMITGPNMSGKSAILR 655 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q ALIV++AQMGS+VPA +G+VDK+F+RVG++DN++ G STFMVEM ETASILN + Sbjct: 656 QTALIVLLAQMGSFVPAGALRMGVVDKIFTRVGASDNISMGESTFMVEMNETASILNNIS 715 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHE-TNRCRGLLATHFHELTDLSKSLKRFHN 787 +S V+LDEIGRGT+T DG+SIAWA EYLHE + + L ATH+HE+ +++++ R N Sbjct: 716 ERSLVLLDEIGRGTSTYDGISIAWAISEYLHEHPSHAKVLFATHYHEINEMTETFSRIKN 775 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ 847 + V + + ++FL K++PG + HS+GI V K+AG+P V++RA ILK EK H+ Sbjct: 776 YNVSVKELEDDVLFLRKLVPGGSQHSFGIHVAKMAGMPQAVLNRANKILKRLEK--SHSS 833 Query: 848 KDMRLYYPEIQTKESKNNLSKNDKLFVEKIK----CLNLDEMSPLTALKTLYAVK 898 +++ +I +E + + D +E+++ +++D ++P+ AL L +K Sbjct: 834 EELSDKMKQISEEELQLSFFNLDDPLLEELRDEISGIDIDTLTPVEALMKLNEMK 888 >gi|294500854|ref|YP_003564554.1| DNA mismatch repair protein MutS [Bacillus megaterium QM B1551] gi|294350791|gb|ADE71120.1| DNA mismatch repair protein MutS [Bacillus megaterium QM B1551] Length = 891 Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust. Identities = 298/918 (32%), Positives = 510/918 (55%), Gaps = 78/918 (8%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 ++ + TPM++QY+ IK+ D+ +F+R+GDFYE+FF+DA AS+ L ITLT R + Sbjct: 6 SMAAYTPMIQQYLRIKAEYQDAFLFFRLGDFYEMFFEDATTASQELEITLTSRDGGGQER 65 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCGVP H+A YI++LI+ G ++AICEQ+E P AK +V+R VV++++PGTL Sbjct: 66 IPMCGVPYHSAPTYIERLIEKGFKVAICEQVEDPKHAK-----GVVKREVVQVISPGTLM 120 Query: 141 EDQLLSPTDSNYLMAVARIRTE-WAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREI 197 ++ L ++NY+ +V + + +A D+STG ++ +S HD ++S+I + +E+ Sbjct: 121 NERGLHEKENNYICSVTGFEDQTFGLALSDLSTGENSVTLVSSFHD-IVSEIYAKEAKEV 179 Query: 198 IFSEKELSHAEYKS-LFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 + S +E+ + L +TL + +++S + DY V++ + Sbjct: 180 VVS------SEFPADLLQTLKERMTI--TISYENSTEQVEGLDYL----VESLQQQKLI- 226 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLL 315 T A + Y+ +TQ + + + I + ID ++ NLE+ T+ S ++ SLL Sbjct: 227 -TTFARILQYLTRTQKRSLEHLQPVQFYQINEYMKIDLFSKRNLELTETIRSKGKKGSLL 285 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D ++T GGRL I PL I+ RL+ ++ ++ ++++LK D+ Sbjct: 286 WLLDQTVTAMGGRLLKNWIDRPLLKQADIDNRLNMVDVLMKQFFEREELRELLKDVYDLE 345 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEK 433 R R+ G +D+ ++ +++ +I + L + +L ++ ++L LE+ Sbjct: 346 RLAGRVAFGNVNARDLIQLKKSLQNVPHIQEVVNRLNHPYATKLVEDIDPCERLANLLER 405 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + P ++G + DG LD+ R K IASL+ + E+T I++LKI Sbjct: 406 GLK----EHPPLSIKEGDIINDGYHEQLDQYRDASRNGKTWIASLEQQEREKTGIRSLKI 461 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GY+IEVT ++ +L + + + +QT++N RF T EL + E I A Sbjct: 462 GYNRVFGYYIEVTRANLHLLPEGM-----YERKQTLTNAERFITPELKEKEALILEAEEK 516 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + +E E F + + L ++ ++ +D+ A +++E++Y +PI +S + Sbjct: 517 IVELEYELFLQIREEVKAYIPRLQELAKKVSELDVLQCFAKISEERHYTKPIF-SSEDIS 575 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +++GRHP+VEK + +S+ ++ NDC ++ + + L+TGPNM GKST++RQ AL Sbjct: 576 IQNGRHPVVEKVM---NSQEYVPNDCQMT-----DDSSILLITGPNMSGKSTYMRQVALT 627 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 I+AQ+G +VPA A + I D++F+R+G+AD+L SG+STFMVEM+ET + + AT S + Sbjct: 628 AILAQIGCFVPADEAVLPIFDQVFTRIGAADDLISGQSTFMVEMLETKNAVTNATQSSLI 687 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 +LDEIGRGT+T DG+++A A IEY+HE C+ L +TH+HELT L +SL N + Sbjct: 688 LLDEIGRGTSTYDGMALAQAIIEYVHEHIGCKTLFSTHYHELTVLDESLPALKNVHVSAV 747 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK------------ 841 + N ++FLHK+ G AD SYGI V +LA LP+ ++ RA IL E+ Sbjct: 748 EKNGKVVFLHKIKDGAADKSYGIHVAELAELPDPLLERARVILHDLEQSSEREPVHQAPK 807 Query: 842 --------------LYHHNQKDMR-------LYYPEIQTKESKNNLSKNDKLFVEKIKCL 880 L + D + L + EI+ K+ K LSK +K ++++K L Sbjct: 808 REEMTQQVPQEGASLVQEERADNKKADEANQLSFFEIEEKKEKPALSKREKAIIDRLKEL 867 Query: 881 NLDEMSPLTALKTLYAVK 898 ++ EM+PL A+ +Y ++ Sbjct: 868 DILEMTPLDAMNAMYELQ 885 >gi|312870746|ref|ZP_07730853.1| DNA mismatch repair protein MutS [Lactobacillus iners LEAF 3008A-a] gi|329919600|ref|ZP_08276589.1| DNA mismatch repair protein MutS [Lactobacillus iners SPIN 1401G] gi|311093758|gb|EFQ52095.1| DNA mismatch repair protein MutS [Lactobacillus iners LEAF 3008A-a] gi|328937405|gb|EGG33827.1| DNA mismatch repair protein MutS [Lactobacillus iners SPIN 1401G] Length = 854 Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust. Identities = 287/872 (32%), Positives = 479/872 (54%), Gaps = 41/872 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY +IK PD+ +FYR+GDFYELF DDA+ ++ L +TLT R K IPM G Sbjct: 6 TPMMEQYYKIKQQYPDAFLFYRVGDFYELFEDDAVKGAKLLELTLTHRSNKSAKPIPMAG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP + YI L+ G+++AICEQ+E P +A+ +V+R +++LVTPGT+ D Sbjct: 66 VPHLAVDSYINTLVDKGYKVAICEQLEDPKKAQ-----GMVKRGIIQLVTPGTVINDNPD 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 +SNYL ++ W + + D+STG + ++ + ++++++ + RE+++ E Sbjct: 121 QAKESNYLTSLCSNSQGWGLTYCDLSTGESYATHLTSWEMIVNELLSLQTRELVYGETLT 180 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S K +F + ++QP + S+ ++ I+ V T +Q+E A + Sbjct: 181 SD---KQIFLKKAGITLSQP-------VKLSK--EHAEISYV-TQQLHNQLEIAATKQLL 227 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSIT 323 +Y+ TQ + + + + L + ++NLE++++ +G + SL +D + T Sbjct: 228 AYLLATQKRSLAHLQVTQSYEPNQYLQMSHIVQTNLELIKSAKTGKKMGSLFWLLDKTST 287 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 GGRL I PL ++I +R + + I K L+ D+ R R+ + Sbjct: 288 AMGGRLLKSWIERPLISLSEIKSRQLVVTALFDDYFSREKIIKQLQGVYDLERLTGRVAL 347 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFL--KNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 G +++ + D + I+N+ KN++ ++ LK + + KT+ + Sbjct: 348 GSANARELLQLADSLAVVPEIINILANSKNEVLNNFAQKIDPLKGIHDLIVKTIV----E 403 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + P ++GG ++ G + LD R K+ +A + E+T I NL++ +N GY Sbjct: 404 NPPLSTKEGGIIKSGVSSQLDRYRDAMMNGKKWLADMANSEREKTGINNLRVGYNKVFGY 463 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IEVT+S KD DR++ +QT++N R+ T+EL + E I A + + +E E Sbjct: 464 YIEVTNSY-----KDKVPLDRYMRKQTLTNAERYITVELKEHEALILEAQDYSTDLEYEL 518 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY-CRPIIDNSTNFIVKDGRHP 620 F L I + +L ++ ++ +D+ ++L+++ NY C +S+ + +GRHP Sbjct: 519 FTNLREDIKKYIPALQKLAKQLSSLDVLSTFSLLSEQNNYVCPQFSQDSSAINIVNGRHP 578 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + S + +I ND + ++L+TGPNM GKST++RQ ALI+IMAQMG Sbjct: 579 VVEKVM---SDEEYIPNDVKMD-----EQTNIFLITGPNMSGKSTYMRQLALIIIMAQMG 630 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 ++PA A + I DK+F+R+G+ D+L SG+STFMVEM E L AT +S ++ DEIGR Sbjct: 631 CFIPADSAVLPIFDKIFTRIGAGDDLISGKSTFMVEMSEANIALKNATKRSLILFDEIGR 690 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A I+YLH+ + L ATH+HELTDL + L N + + N +I Sbjct: 691 GTATYDGMALAGAIIKYLHDKVGAKTLFATHYHELTDLDQELAHLKNIHVGATQENGHLI 750 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 FLHK++PG AD SYGI V +LAGLP V+ A +LK EK + NQ ++ Sbjct: 751 FLHKILPGAADQSYGIHVAQLAGLPTKVLREATHMLKQLEK-HSDNQAAFSDEQLDLFGS 809 Query: 861 ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALK 892 ++ +S ++ + +IK L L+E++PL ++ Sbjct: 810 SDQHKMSDEEQDVLTQIKNLYLNEITPLQVMQ 841 >gi|309807428|ref|ZP_07701391.1| DNA mismatch repair protein MutS [Lactobacillus iners LactinV 01V1-a] gi|308169350|gb|EFO71405.1| DNA mismatch repair protein MutS [Lactobacillus iners LactinV 01V1-a] Length = 854 Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust. Identities = 284/876 (32%), Positives = 478/876 (54%), Gaps = 49/876 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY +IK PD+ +FYR+GDFYELF DDA+ ++ L +TLT R K IPM G Sbjct: 6 TPMMEQYYKIKQQYPDAFLFYRVGDFYELFEDDAVKGAKLLELTLTHRSNKSAKPIPMAG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP + YI L+ G+++AICEQ+E P +A+ +V+R +++LVTPGT+ D Sbjct: 66 VPHLAVDSYINTLVDKGYKVAICEQLEDPKKAQ-----GMVKRGIIQLVTPGTVINDNPD 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 +SNYL ++ W + + D+STG + ++ + ++++++ + RE+++ E Sbjct: 121 QAKESNYLTSLCSSSQGWGLTYCDLSTGESYATHLTSWEMIVNELLSLQTRELVYGETLT 180 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S K +F + ++QP +++ + + T +Q+E A + Sbjct: 181 SD---KQIFLKKAGITLSQP----------VKLSGEHAEVSYVTQQLHNQLEIAATKQLL 227 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSIT 323 +Y+ TQ + + + + L + ++NLE++++ +G + SL +D + T Sbjct: 228 AYLLATQKRSLAHLQVTQSYEPNQYLQMSHIVQTNLELIKSAKTGKKMGSLFWLLDKTST 287 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 GGRL I PL ++I +R + + I K L+ D+ R R+ + Sbjct: 288 AMGGRLLKSWIERPLISLSEIKSRQLVVTALFDDYFSREKIIKQLQGVYDLERLTGRVAL 347 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFL--KNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 G +++ + D + I+N+ KN++ ++ LK + + KT+ + Sbjct: 348 GSANARELLQLADSLAVVPEIINILANSKNEVLNNFAQKIDPLKGIHDLIVKTIV----E 403 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + P ++GG ++ G + LD R K+ +A + E+T I NL++ +N GY Sbjct: 404 NPPLSTKEGGIIKAGVSSQLDRYRDAMMNGKKWLADMANSEREKTGINNLRVGYNKVFGY 463 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IEVT+S KD DR++ +QT++N R+ T+EL + E I A + + +E E Sbjct: 464 YIEVTNSY-----KDKVPLDRYMRKQTLTNAERYITVELKEHEALILEAQDYSTDLEYEL 518 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY-CRPIIDNSTNFIVKDGRHP 620 F L I + +L ++ ++ +D+ ++L+++ NY C +S+ + +GRHP Sbjct: 519 FTNLREDIKKYIPALQKLAKQLSSLDVLATFSLLSEQNNYVCPQFSQDSSAINIVNGRHP 578 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + S + +I ND + ++L+TGPNM GKST++RQ ALI+IMAQ+G Sbjct: 579 VVEKVM---SDEEYIPNDVKMD-----EQTNIFLITGPNMSGKSTYMRQLALIIIMAQIG 630 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 ++PA A + I DK+F+R+G+ D+L SG+STFMVEM E + L AT +S ++ DEIGR Sbjct: 631 CFIPADSAVLPIFDKIFTRIGAGDDLISGKSTFMVEMSEANTALKNATKRSLILFDEIGR 690 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A I+YLH+ + L ATH+HELTDL + L N + + N +I Sbjct: 691 GTATYDGMALAGAIIKYLHDKVGAKTLFATHYHELTDLDQELAHLKNIHVGATQENGHLI 750 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ-- 858 FLHK++PG AD SYGI V +LAGLP V+ A +LK EK D ++ + + Q Sbjct: 751 FLHKILPGAADQSYGIHVAQLAGLPTKVLREATHMLKQLEK-----NSDNQVAFSDEQLD 805 Query: 859 --TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALK 892 ++ +S ++ + +IK L L+EM+PL ++ Sbjct: 806 LFGSSDQHKMSDEEQDVLTQIKNLYLNEMTPLQVMQ 841 >gi|282858637|ref|ZP_06267795.1| DNA mismatch repair protein MutS [Prevotella bivia JCVIHMP010] gi|282588555|gb|EFB93702.1| DNA mismatch repair protein MutS [Prevotella bivia JCVIHMP010] Length = 889 Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust. Identities = 282/836 (33%), Positives = 461/836 (55%), Gaps = 42/836 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKD 80 K TPMM+Q+ +K+ +PD+L+ +R GDFYE + DDA+ A++ LGITLTKR G + G + Sbjct: 6 KGMTPMMKQFFSMKAKHPDALLLFRCGDFYETYHDDAIDAAKVLGITLTKRNNGGNSG-E 64 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKK--RGNKSL------VRRNVVR 132 I M G P H + Y+ KLI+ G R+AIC+Q+E P + ++ +G K L V+R + Sbjct: 65 IAMAGFPHHALDTYLPKLIRAGKRVAICDQLEDPKKKREELKGKKGLSPMDKMVKRGITE 124 Query: 133 LVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRI 192 LVTPG D +L+ ++N+L AV + ++++DISTG F +D + I Sbjct: 125 LVTPGVAMGDNVLNYKENNFLAAVHFGKQACGVSFLDISTGEFLTGEGTYDYVEKLIGSF 184 Query: 193 DPREIIFSEKELSHAEYKSLFETLGNVAVA---QPNVFFDHSISESRIADYYNITTVDTF 249 P+EI++ YK FET + + F + ++ ++ + F Sbjct: 185 SPKEILYDRA------YKKEFETHFGTKLCTFEMDDWVFTEQTANQKLLKHFGTANLKGF 238 Query: 250 GSFSQVEKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG 308 G AA AI Y++ TQ I R + + + +D +LE++ T++ Sbjct: 239 GVDHLHNGIIAAGAIMQYLELTQHTQIRHITALTRIEEEKYVRMDRFTIRSLELVSTMN- 297 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKIL 368 SLL ID +IT GGR+ + PL I RLD + +F ++ + I + Sbjct: 298 DEGTSLLNVIDNTITPMGGRMLRRWMVFPLKTVKPIEERLDVVEYFFKHQDFRDTINEQF 357 Query: 369 KSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKK 426 D+ R +S++ +GR P+++ +++ +++ + L+ +N + L E+L Sbjct: 358 HRIGDLERIISKVAVGRVSPREVVQLKNALKAIQPVKTSCLYAENKV---LNRIGEQLN- 413 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 L +SL + + +D P G + G + LDE R++RD K + +Q + AE T Sbjct: 414 LCESLRNRIEQEIQNDPPQLANKGDIIAFGYNQELDELRTIRDHGKEYLLQIQEREAERT 473 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 I +LK+ NN GY++EV ++ + ++ ++ +QT++ R+ T EL + E++ Sbjct: 474 GINSLKVGFNNVFGYYLEVRNTFKDNVPEE------WVRKQTLAQAERYITQELKEYEDK 527 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 I A L +E + F L + E + + ++A +D ++ ++E +Y RP++ Sbjct: 528 ILGADERILALEGKLFMELIRDMQEFIPQIQINATLVAHLDCLLSFTRASEEHHYVRPVV 587 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 D+S +K GRHP++E L + ++ ND L D + ++ ++TGPNM GKS Sbjct: 588 DDSEVLDIKQGRHPVIETQLP--LGEQYVPNDVLL----DNDRQQIMMITGPNMAGKSAL 641 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 LRQ ALIV++AQ+G +VPA A +G+VDK+F+RVG++DN++ G STFMVEM E ++ILN Sbjct: 642 LRQTALIVLLAQIGCFVPAERARVGLVDKIFTRVGASDNISVGESTFMVEMTEASNILNN 701 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKR 784 T +S V+ DE+GRGT+T DG+SIAWA +EYLHE R R L ATH+HEL ++ K+ Sbjct: 702 VTPRSLVLFDELGRGTSTYDGISIAWAIVEYLHEQPRAKARTLFATHYHELNEMEKNFHG 761 Query: 785 FHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 N + V + N IIFL K+ G ++HS+GI V +AG+P +++ RA IL E Sbjct: 762 IKNYNVSVKEVNGKIIFLRKLEKGGSEHSFGIHVADIAGMPRSIVKRANVILSELE 817 >gi|23099086|ref|NP_692552.1| DNA mismatch repair protein [Oceanobacillus iheyensis HTE831] gi|44888208|sp|Q8CXG6|MUTS_OCEIH RecName: Full=DNA mismatch repair protein mutS gi|22777314|dbj|BAC13587.1| DNA mismatch repair protein (mismatch recognition step) [Oceanobacillus iheyensis HTE831] Length = 867 Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust. Identities = 297/893 (33%), Positives = 487/893 (54%), Gaps = 56/893 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QYI+IK+ D+ +FYR+GDFYELF++DA A++ L ITLTKR G IPMCG Sbjct: 5 TPMMEQYIQIKNEYKDAFLFYRLGDFYELFYEDATRAAQELEITLTKRAGGKGDPIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A +YI+ LI G+++AICEQ+E P AK +V+R VV+++TPGT+ E +L Sbjct: 65 VPYHSAENYIKTLIDRGYKVAICEQVEDPKTAK-----GVVKREVVQMITPGTVMESTML 119 Query: 146 SPTDSNYLMAVARIRT-EWAIAWIDISTGIFKISTSNH--DRLISDIMRIDPREIIFSEK 202 + ++NY+ +++ + + I + D+STG +++ N D +I + +EI+ S Sbjct: 120 TDGENNYIGSLSHFQDGSYVIVYNDLSTGENRLAFINDGWDAVIHEFYNQPIKEIVISSN 179 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 L L E L Q V F+ E N+ +FS++ Sbjct: 180 -LPEELQIQLKERLNVTLSYQDEVTFNAEFRELS----ENLNDERLMKAFSRL------- 227 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT-LSGSREQSLLKTIDYS 321 ++YI+ TQ + + E +++ + +D ++ NLE+ T + S+ SLL +D + Sbjct: 228 -LNYIQTTQKRSLHHLQKAEVIELKKYMSLDMYSKRNLELTETIMKKSKHGSLLWVLDKT 286 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +T G R + + PL KIN RL+ + F + ++ +LKS D+ R R+ Sbjct: 287 VTAMGARTLKKWLERPLLSKQKINERLEVVQGFYDGFMERESLRDLLKSVYDLERLSGRI 346 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 G +D+ ++ + I + D PE R A ++ P+ + ++L + D Sbjct: 347 AFGNVNARDLIQLKQSLSRIPAIQETLRQFDQPEITRLA--EMLIYPEQMVESLEKSIVD 404 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + P ++G +++G LD R K+ IA L+ + EET I++LK+ +N GY Sbjct: 405 EPPISIKEGSLIKEGYHDQLDTYRDASRNGKKWIAQLEHQEREETGIRSLKVGYNRVFGY 464 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IE+T + +L + R+ RQT++N RF EL + E I A ++ +E + Sbjct: 465 YIEITKPNLHLL-----PEGRYERRQTLTNAERFVNEELKEKEKLILEAEEKSVELEYDL 519 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 F + + I E+ + + +I+ +D+ + A +++ NY RP N V GRHP+ Sbjct: 520 FIQIRDQIKEEIPLIQQLAHIISQMDVLQSFATVSESNNYVRPDF-NDEQLQVTKGRHPV 578 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE+ +K + F+ ND DK S + L+TGPNM GKST++RQ AL IM Q+G Sbjct: 579 VEQVMKDGT---FVPNDVVF----DK-SQNMLLITGPNMSGKSTYMRQVALTSIMGQIGC 630 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 ++PA A + + D++F+R+G+AD+L SG+STFMVEM+E ++ AT++S ++LDEIGRG Sbjct: 631 FIPAEQATLCVFDQIFTRIGAADDLVSGQSTFMVEMLEARHAISNATDRSLILLDEIGRG 690 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 T+T DG+++A A +EY+H + L +TH+HELT L SL N ++ + ++F Sbjct: 691 TSTYDGMALAQAIVEYIHHNIAAKTLFSTHYHELTALEDSLHHLKNIHVRAEEHEGNVVF 750 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM---------RL 852 LH++ G AD SYGI V KLA LPN +I RA IL+ E N+K +L Sbjct: 751 LHQIKEGAADQSYGIHVAKLADLPNELIERASVILEELED--DSNKKPTPTKDKLESGQL 808 Query: 853 YYPEIQTKESKNNLSKNDKL-------FVEKIKCLNLDEMSPLTALKTLYAVK 898 + ++ + K + K +K +E +K +N+ +++PL A+ LY ++ Sbjct: 809 SFFIEESNKKKAEMPKQEKTHNNQEQSVIEDLKNVNVLDLTPLEAMNELYRLQ 861 >gi|71901697|ref|ZP_00683772.1| MutS 1 protein [Xylella fastidiosa Ann-1] gi|71728539|gb|EAO30695.1| MutS 1 protein [Xylella fastidiosa Ann-1] Length = 858 Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust. Identities = 303/894 (33%), Positives = 484/894 (54%), Gaps = 54/894 (6%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + TP+M+QY K+ PD L+F+RMGDFYELF DA A+R L ITLT+RG G I Sbjct: 1 MAEHTPLMKQYFAAKAEYPDLLLFFRMGDFYELFHQDARKAARLLDITLTQRGSSGGTPI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PM GVPVH Y+ +LI +G +AICEQI P AK LV R VVR+VTPGT+TE Sbjct: 61 PMAGVPVHAYEGYLARLIALGESVAICEQIGDPGLAK-----GLVERKVVRIVTPGTITE 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFS 200 + LL LMA++R + + +AW D++ G F ++ + + L +++ R++P E++ Sbjct: 116 EALLEERRDTLLMALSRTKNCYGLAWADLAGGRFLVNEVDSEEALEAELARLEPAELLLP 175 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 +++ + EY N +P FD ++ ++ + + FG + + TAA Sbjct: 176 DED-AWPEYLQQR----NGVRRRPPWLFDADSGRRKLLAFFKLHDLSGFGIENNPQATAA 230 Query: 261 AAAIS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A A+ YI++TQ P + E + + +++A R +LE+ + G +LL +D Sbjct: 231 AGALLGYIEETQKQRLPHLTSITMETVGEAITMNAATRRHLELDTRVDGESRHTLLGVLD 290 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 ++T GGRL + PL + R ++ I + L N +++ + D+ R L+ Sbjct: 291 STVTPMGGRLLRRWLHRPLRLREVVRQRHAAVGSMIDSD-LDNKLRETFRRLGDMERILT 349 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ + P+DI+ +RD + + L +D P LR +L + S L + Sbjct: 350 RVALRSARPRDISTLRDSLSLLPRLRELLNASDSPR-LRVLYAELGE-HDSTASLLVKAV 407 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 ++ P DGG + D LDE R L + + + + L+ + E + I LK+ +N Sbjct: 408 AEQPPLKLTDGGVIAPEYDVELDELRKLSNNADQFLIDLETRERESSGISTLKVGYNRVH 467 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IE++ A ++ + RQT++N R+ T EL E+++ +A + AL E Sbjct: 468 GYYIEISKGQAD------KAPVHYTRRQTLTNAERYITEELKAFEDKVLSARDRALAREK 521 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 +E L + + Q E L + ++ +D+ + A A+ ++ RP +++++ ++ GRH Sbjct: 522 LLYEQLLDTVGAQLEPLKRCAAALSELDVLVCFAERAQTLDWVRPELEHTSCLHIEGGRH 581 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE +Q+ F ND L ++ ++TGPNMGGKST++RQNALIV++A + Sbjct: 582 PVVEAVREQR----FEPNDLYLHPER-----RMLVITGPNMGGKSTYMRQNALIVLLAYI 632 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPAS A IG +D++ +R+G+ D+LA G+STFM+EM ET+ IL+ AT QS V++DEIG Sbjct: 633 GSYVPASRALIGPIDRIMTRIGAGDDLARGQSTFMLEMTETSYILHHATAQSLVLMDEIG 692 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK-----SLKRFHNATLQVSD 794 RGT+T DGL++A A +L NRC L ATH+ ELT L+ L N + Sbjct: 693 RGTSTYDGLALADAVARHLAHINRCYTLFATHYFELTALADETYEGGLSGIANVHFDAVE 752 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 +E ++F+H V G A+ S+G+QV LAGLP +++A L E Q+ + Sbjct: 753 HSERLVFMHTVKDGPANRSFGLQVAALAGLPAATVAQARRRLAELE------QRGRESHV 806 Query: 855 PEI--QTKESKNNLSKNDKLFV-------EKIKCLNLDEMSPLTALKTLYAVKA 899 EI Q ++ S LF E + L+ DE++P AL+ LY +KA Sbjct: 807 SEITPQALDAPQQCS----LFASAPSAAQEALVALHPDELTPKQALEALYRLKA 856 >gi|325846480|ref|ZP_08169395.1| DNA mismatch repair protein MutS [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481238|gb|EGC84279.1| DNA mismatch repair protein MutS [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 869 Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust. Identities = 314/911 (34%), Positives = 506/911 (55%), Gaps = 84/911 (9%) Query: 16 IDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK 75 +D E + TPM+R Y+++K+ DSL+ YR+GDFYE FF DA+ S+ L + LT GK Sbjct: 1 MDQEFKYEKLTPMLRHYVDVKNDFKDSLLLYRVGDFYEAFFTDAITISKTLQLALT--GK 58 Query: 76 HLGKD--IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRL 133 G D PMCGVP H + YI KL+K G+++A+C+Q+E P +AK LV+R + R+ Sbjct: 59 ECGHDKRAPMCGVPHHVIDTYINKLVKNGYKVALCDQVEDPKKAK-----GLVKRAITRV 113 Query: 134 VTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTG---IFKIST---SNHDRLIS 187 ++PGT+ + + L D+N+L+++ + DISTG F+I + S+ ++LI+ Sbjct: 114 ISPGTVVDLESLDKKDNNFLLSIFENNFGIGACFADISTGKLMTFEIKSDKNSSANKLIN 173 Query: 188 DIMRIDPREII----FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISES---RIADY 240 +I +I P EII FS K++ EY L + + + + N + S+SE+ + D Sbjct: 174 EIEKISPSEIIINSNFSNKKV--LEYLDLNKEILINKIDETNNY--KSLSENVFKHLGDK 229 Query: 241 YNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNL 300 N V ++ A + + YI + N + E +I S + +D+ R NL Sbjct: 230 -NFEKVKNL----RISLIAISNLLDYIYRYHKNNLAHLNEIEILEISSYMQLDANTRRNL 284 Query: 301 EILRTLSG-SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPI 359 E+ + +E SL K ID + T G RL E + PL D KI RLD + +F N Sbjct: 285 ELHTNIDKKGKENSLFKLIDKADTVMGSRLLNEWLERPLIDKEKIEKRLDLVEYFYLNTD 344 Query: 360 LINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRG 419 + + I L D+ R + ++ R +D ++ +R ++PE + Sbjct: 345 ISHKITFYLDDIYDLERIIGKISYQRANARDFISLKTSLR------------NIPE-FKK 391 Query: 420 AVEKL---------KKLPQ--SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLR 468 + KL K +P ++ + L + +D P +GG +++G + LD+ + Sbjct: 392 YLSKLDNKDIVSFSKNIPDVSNIYEILDKSIINDPPIVITEGGIIKEGFNDDLDKLKESS 451 Query: 469 DQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQT 528 +++ + + + E+T I LKI +N N GY IEVT ++ ++ D +I +QT Sbjct: 452 ISAEKDLINYEKDEKEKTGISKLKINYNKNNGYSIEVTKANTHLVP------DYYIRKQT 505 Query: 529 MSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDI 588 + N R+TT +L +L N I +++ +E + F + I++ ++ L S++I+IID Sbjct: 506 LKNQERYTTEKLEELSNLILGSSDKINELEYKIFGEIREFILDNTKKLQYLSKLISIIDS 565 Query: 589 SIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKN 648 +LA LA E NY +PII N +KDGRHP++EK LK+ FIAND D+ N+ Sbjct: 566 LNSLAKLAIENNYKKPIITNDNTIKIKDGRHPVIEKNLKENE---FIANDTDIGEDNNL- 621 Query: 649 SGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLAS 708 + ++TGPNM GKST++RQ A+I+I+AQMGS+VP A I + DK+F+R+G++DN++ Sbjct: 622 ---IQIITGPNMAGKSTYMRQMAIIIILAQMGSFVPCQSASISVCDKVFTRIGASDNISK 678 Query: 709 GRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLL 768 G STFM+EM E ++IL +T SF+ILDE+GRGT++ DGLSIA + ++YL + R + + Sbjct: 679 GESTFMLEMNEVSNILKNSTENSFIILDEVGRGTSSDDGLSIAMSLVDYLSKKKRAKTVF 738 Query: 769 ATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTV 828 ATHFHELT L L N + + + + ++FL K+ G D SYGI+V KL+GLP+ + Sbjct: 739 ATHFHELTILENKLYNVVNLKIDILEEDNNLVFLRKISKGKTDRSYGIEVAKLSGLPDEL 798 Query: 829 ISRAYDILKTF-EKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIK----CLNLD 883 I A K F +KL +D R++ + T N + K+ V+KIK +N++ Sbjct: 799 IENA----KIFMDKL----DEDDRIF--KNSTNIVNNTIDDIYKIKVDKIKEKIDSININ 848 Query: 884 EMSPLTALKTL 894 E++PL A+ L Sbjct: 849 ELTPLEAINVL 859 >gi|285018993|ref|YP_003376704.1| DNA mismatch repair protein, ATPase [Xanthomonas albilineans GPE PC73] gi|283474211|emb|CBA16712.1| putative dna mismatch repair protein, atpase [Xanthomonas albilineans] Length = 863 Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust. Identities = 296/888 (33%), Positives = 477/888 (53%), Gaps = 40/888 (4%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 LK TP+M+Q+ K+ PD L+F+RMGDFYELF+DDA A+R L ITLT+RG G Sbjct: 5 ELKEHTPLMKQFFAAKADYPDLLLFFRMGDFYELFYDDARKAARLLDITLTQRGSSGGAP 64 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM GVPVH Y+ +L+ +G +AICEQI P AK LV R VVR+VTPGT+T Sbjct: 65 IPMAGVPVHAYEGYLARLVALGESVAICEQIGDPALAK-----GLVERKVVRIVTPGTVT 119 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIF 199 ++ LL LMA+AR + + +AW D++ G F ++ + D L +++ R++P E++ Sbjct: 120 DEALLDERRDTLLMAIARTKHGYGLAWADLAGGRFLVNEVDSEDALEAELARLEPAELLV 179 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 +++ ++ + F +P FD ++ ++ + + FG + A Sbjct: 180 PDED----QWPT-FLRERRGVRRRPPWLFDADSGRRQLLAFFQLHDLTGFGIDDRPRAIA 234 Query: 260 AAAAIS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA A+ Y+++TQ P + E + +++A R +LE+ + G +LL + Sbjct: 235 AAGALLGYVEETQKQRLPHLTSIALETAGEAIAMNAATRRHLELDTRVDGDTRNTLLGVL 294 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D +IT GGRL + PL + R ++ I + ++ ++ D+ R L Sbjct: 295 DSTITPMGGRLLRRWLHRPLRLREVLMQRHHAVGTLIDRGADTD-LRDAFRALGDLERIL 353 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 +R+ + P+D + +RDG+ + + D P A E + + + L+S Sbjct: 354 TRVALRSARPRDFSTLRDGLGLLPAVRAILAPLDSPRLAALAAELGQH--EEIAHLLASA 411 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 +++ P DGG + DA LDE R L + + + L+ + + I LK+ +N Sbjct: 412 IAEQPPLKLSDGGVIAADYDAELDELRRLSTNANQFLIDLEARERASSGIATLKVGYNRV 471 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IE++ A ++ + RQT++N R+ T EL + E+++ +A AL E Sbjct: 472 HGYYIEISKGQAD------KAPVHYSRRQTLTNAERYITEELKNFEDKVLSARERALSRE 525 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 +E L + + E E L A+ ++ +D+ A A A+ ++ P + + ++ GR Sbjct: 526 KLLYEGLLDTLGECLEPLKRAAAALSELDVLAAFAERAQVLDWSPPELQSDACLSIERGR 585 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE +Q PF ND DL ++ ++TGPNMGGKST++RQNALIV++A Sbjct: 586 HPVVEAVREQ----PFEPNDLDL-----HPGRRMLVITGPNMGGKSTYMRQNALIVLLAH 636 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GSYVPA A IG +D++ +R+G+ D+LA G+STFMVEM ET+ IL+ AT QS V++DEI Sbjct: 637 IGSYVPARRAVIGPIDRILTRIGAGDDLARGQSTFMVEMAETSYILHHATAQSLVLMDEI 696 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK-----SLKRFHNATLQVS 793 GRGT+T DGL++A A +L + NRC L ATH+ ELT L+ N L Sbjct: 697 GRGTSTYDGLALADAVARHLAQHNRCYTLFATHYFELTALADEPVEGGPSGIANVHLDAV 756 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL--YHHNQKDMR 851 + + ++F+H V G A+ S+G+QV LAGLP +++A L E+ HH ++ Sbjct: 757 EHGDRLVFMHAVKDGPANRSFGLQVAALAGLPKATVAQARRRLAELEQRGGEHHA---VQ 813 Query: 852 LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + + T + + E + L+ DE++P AL+ LY +KA Sbjct: 814 MAPQALDTPQQFGLFAAAPSAAQEALAALHPDELTPKQALEALYRLKA 861 >gi|46580059|ref|YP_010867.1| DNA mismatch repair protein MutS [Desulfovibrio vulgaris str. Hildenborough] gi|48428287|sp|P61666|MUTS_DESVH RecName: Full=DNA mismatch repair protein mutS gi|46449475|gb|AAS96126.1| DNA mismatch repair protein MutS [Desulfovibrio vulgaris str. Hildenborough] gi|311233941|gb|ADP86795.1| DNA mismatch repair protein MutS [Desulfovibrio vulgaris RCH1] Length = 905 Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust. Identities = 319/932 (34%), Positives = 483/932 (51%), Gaps = 84/932 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM QY+ IK PD+L+FYRMGDFYELFFDDA +R L I LT R + PMCG Sbjct: 9 TPMFEQYLRIKEDYPDALLFYRMGDFYELFFDDAETTARELQIALTCRNPNAELKAPMCG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H YI +L+ G+R+AICEQIE P EAK LV+R V R++TPGT+ +D L Sbjct: 69 VPYHAVEGYISQLLDKGYRVAICEQIEDPKEAK-----GLVKRAVTRVLTPGTVIDDANL 123 Query: 146 SPTDSNYLMAVARIRTEW-------AIAWIDISTGIFK-ISTSNHDRLISDIMRIDPREI 197 + NYL A+ W A AW+D+STG + + + L ++ PRE+ Sbjct: 124 DAKEHNYLGALF-----WNQDAEAGAFAWVDVSTGEWSGLYSRKLAELWQWAQKMAPREL 178 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQ--PNVFFDHSISESRIADYYNITTVDTFGSFSQV 255 + E + A TLG + FD R+ + + + G + Sbjct: 179 LLPEGVDTPA-----MATLGTTQTVRVPARSHFDLKSGTERVMRAQGVADLGSLGLEGKP 233 Query: 256 EKT-AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR-EQS 313 E A AA ++Y+ +TQ + + ++ L ID NLE+ L G + + Sbjct: 234 ELVRACAALLAYLAQTQKQELSHLAPFKPLNLGRHLIIDEVTERNLELFHRLDGRKGPGT 293 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T GGRL ER+ P +++ I + + Q+ + ++ L D Sbjct: 294 LWHILDRTLTPMGGRLLEERMHHPWREASPIRETQQVVEWLFQDDVRREALRTALDLVYD 353 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEEL--RGAVEKLKKLPQSL 431 + R +R+ + R PKD +R + + + + PE A LP+ L Sbjct: 354 LERLSTRIFLNRATPKDFIALRQSLSALPAVRATLERPANPEGTYPTDAETSGDTLPKPL 413 Query: 432 EKTLSSM-------------LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASL 478 LS+ L+D+ P +GG R G D LDE L + + A L Sbjct: 414 SDMLSAWDDLADYADLLRRALTDNPPHLVTEGGLFRPGFDPDLDELLDLAEHGE---ARL 470 Query: 479 QLKYAEETKIKNL---KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRF 535 Q AEE + L K+ +N GYF E++ + A + + F+ RQT++N RF Sbjct: 471 QELLAEEQTVSGLPKLKLGYNRVFGYFFELSRAGADSVP------EHFVRRQTLANAERF 524 Query: 536 TTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAIL 595 TT L +LE ++ +AT+ +E F+ L + + E + + ++A +D +LA + Sbjct: 525 TTERLKELEEKLVSATDRRKTLEYRLFQSLRDTVAEARPRVLFMADMLAHLDFWQSLADV 584 Query: 596 AKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLL 655 A+ + RP + + ++++GRHP+VE Q S F+ ND + ++K +L L+ Sbjct: 585 ARRNGWVRPDVHTGHDIVIREGRHPVVEA---MQGSASFVPNDLRM---DEKR--RLLLI 636 Query: 656 TGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMV 715 TGPNM GKST LRQ A+I ++AQMG++VPA A IGI D++FSRVG++DNLA G+STFMV Sbjct: 637 TGPNMAGKSTVLRQTAIICLLAQMGAFVPAREASIGIADRIFSRVGASDNLAQGQSTFMV 696 Query: 716 EMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRG----LLATH 771 EM+ETA IL QA+ +S VILDEIGRGT+T DG+++AWA +E L T R G L ATH Sbjct: 697 EMMETARILRQASKRSLVILDEIGRGTSTFDGMALAWAVVEEL--TRRAGGGIRTLFATH 754 Query: 772 FHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISR 831 +HE+T L + HN + + + N I+FL +++PG AD SYGI+V +LAG+P++V+ R Sbjct: 755 YHEITSLEGRIPGVHNMNIAIREWNGDIVFLRRLVPGPADKSYGIEVARLAGVPHSVVQR 814 Query: 832 AYDILKTFEKLYHH----NQKDMRLYYP---------EIQTKESKNNLSKNDKLFVEKIK 878 A ++L E+ N R P ++ T + S + + ++ Sbjct: 815 ARELLADLERTRDAARGTNSAPSRQTLPGLDLPSKQEQVDTIVAPPPCSGVEHPLLVALR 874 Query: 879 CLNLDEMSPLTALKTLYAVKAWTLEKYSTDED 910 ++ D+M+PL ALK + W +T ED Sbjct: 875 DIDTDDMTPLEALKR---ITEWKQLWGTTRED 903 >gi|313900811|ref|ZP_07834301.1| DNA mismatch repair protein MutS [Clostridium sp. HGF2] gi|312954231|gb|EFR35909.1| DNA mismatch repair protein MutS [Clostridium sp. HGF2] Length = 843 Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust. Identities = 291/880 (33%), Positives = 493/880 (56%), Gaps = 51/880 (5%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 + TPMM+ Y+E+K + D+++FYR+GDFYE+FF+DA AS L + LT R + + +PM Sbjct: 6 TYTPMMKHYLELKEQHEDAIIFYRLGDFYEMFFEDAKTASSELDLVLTGRNAGVEERVPM 65 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CG+P H A YIQ+LI+ G+++AI EQ+E P AK LV+R+V+++VTPGT+ D+ Sbjct: 66 CGIPHHAAKGYIQRLIQKGYKVAIVEQLEDPALAK-----GLVKRDVIKIVTPGTIM-DE 119 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRI----DPREIIF 199 + + Y+ ++ + A+ +++TG + D+ + I ++ + REI+ Sbjct: 120 VSDEKTTVYIASLHDFQFGLAVILCEMTTGELRAQLI--DKHVMAIQKVLLGNNVREIVI 177 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 EK + + E + + V+ N D+++ E +Y ++ G +TA Sbjct: 178 QEK--FDKKIVKMIEEMQTITVSFHN---DNALKE----EYRHLLN----GIEDDRVETA 224 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTI 318 +Y+ +TQ N + E L +D + + NLE+ +L S SR Q+L + Sbjct: 225 FGVLTNYLDETQKRNMAHLNAVEMVYENDFLQMDFSTKQNLELTSSLRSNSRSQTLWSFL 284 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D + G RL + I PL D+ IN RLD++ + N I + +++ L D+ R Sbjct: 285 DKCRSSMGSRLLKKWIEYPLVDTAMINRRLDAVEYLNDNFITKDELREHLGFVYDMERLS 344 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 +R+ G P+DI + + I LF EE + +++ ++L +E Sbjct: 345 ARVAYGSANPRDILRLIKTLEHTPQIFELFHDCSAYEEFQ-SIDPCRELYDMIE----GA 399 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + D+ P +DGG +G + LD+ R + K I L+ K E T +K+LKI +N Sbjct: 400 IIDNPPLTLKDGGVFVEGYNEELDQVREIGKNGKNWILELENKERERTGVKSLKIGYNRV 459 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IEVT ++ +K + ++ +QT++N RF T EL D E+ I +A ++ +E Sbjct: 460 FGYYIEVTKTNLDSIKDEF----GYVRKQTLTNAERFITQELKDKEDAIVHAQERSIRLE 515 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 E F L N I L + S +A ID ALA ++ E Y RP + +K+ R Sbjct: 516 AELFNHLLNQIKVYLPKLHDLSHALATIDALYALAEISSENGYTRPQFHTGHSIHMKEAR 575 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HPI+++ +K + +++ND ++ ND + ++TGPNMGGKST++RQ L+VIMAQ Sbjct: 576 HPILDRMMK---TTRYVSNDLEMGEDND-----ILMITGPNMGGKSTYMRQTVLLVIMAQ 627 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +G +VPA A + I D++F+R+G++D++ SG+STFMVEMIE + L AT S ++ DEI Sbjct: 628 IGCFVPAKKAEMPIFDQIFTRIGASDDIMSGQSTFMVEMIEANNALQNATANSLILFDEI 687 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DG+++A A IEY+ + + L +TH+HELT++++ N + V + ++ Sbjct: 688 GRGTSTYDGMALAQAMIEYIMRNIKAKTLFSTHYHELTEMAEKNAGIRNVHVDVHEEDDK 747 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 + FL++V+ G AD SYGI V +LA LP++V+ RA IL E L + K+++ P + Sbjct: 748 VTFLYRVLDGKADKSYGINVARLAHLPSSVLERAKQILDNLE-LQPNMVKEVKP--PLVI 804 Query: 859 TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 KE+ ++ + ++K +++++M+P+ A++ LY +K Sbjct: 805 EKENPQHMQ-----IINQVKQVDVNKMTPMEAMQFLYELK 839 >gi|304404423|ref|ZP_07386084.1| DNA mismatch repair protein MutS [Paenibacillus curdlanolyticus YK9] gi|304346230|gb|EFM12063.1| DNA mismatch repair protein MutS [Paenibacillus curdlanolyticus YK9] Length = 909 Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust. Identities = 287/823 (34%), Positives = 457/823 (55%), Gaps = 46/823 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ IK D+ + +R+GDFYE+FF+DA+LASR L ITLT R + IPMCG Sbjct: 6 TPMMQQYLSIKEQAKDAFLLFRLGDFYEMFFEDAVLASRELEITLTGREAGGAERIPMCG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A +YI +LI+ G+++AICEQ+E P AK +VRR +VR+VTPGT+ E + L Sbjct: 66 VPYHSAENYIARLIEKGYKVAICEQVEDPSAAK-----GVVRREIVRVVTPGTVMESKSL 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG---IFKISTSNHDRLISDIMRIDPREIIFSEK 202 + +N+++ VA A D+STG + + + ++ +I P EI+ +E Sbjct: 121 ADKANNFIVGVAEQEGRIGFAACDLSTGELYVTSFAMGGVEAVLDEINVYHPAEIVGNE- 179 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-----SFSQVEK 257 +L E L + + P +A V+ FG Q Sbjct: 180 --------ALLEQLKAYSSSWPRPVLLTPREPMALAG-----VVEQFGEQPLQGLDQERL 226 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLK 316 A Y+ TQ + + R + + +D R NLE+ T+ S++ SLL Sbjct: 227 LVIATLTGYLADTQKRSFGHVRTIRRYEPNQYMILDPFTRRNLELTETVRDRSKKGSLLW 286 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D + T G RL I PL I RL ++ ++ IL + +++ L D+ R Sbjct: 287 LLDRTQTSMGARLLRRWIDKPLLSVAAIEERLSAVEALFRDLILRDDVRRELGEIYDLER 346 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKND--LPEELRGAVEKLKKLPQSLEKT 434 + R+ G +D+ ++ +R ++ L + + L A++ L ++E+ Sbjct: 347 LVGRVAFGSANGRDLNALKSSLRRVPALVALCADSGDRTLQALFEAIDDCTDLADAIER- 405 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 ++ D+ P R+GG +R G D LD R KR +A L+ E T IK+LKI Sbjct: 406 ---VIVDEPPVSVREGGLIRSGTDDYLDRLREASTDGKRWLAELERSEREATGIKSLKIG 462 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY++EV+ ++ + L + R+ +QT++N R+ T EL + E I A Sbjct: 463 YNKVFGYYLEVSKANIAGL-----PEGRYERKQTLANAERYVTPELKEKERLILEAEEKM 517 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E E F L + I Q L ++ IA +D +LA ++ E+ + RP + + + +V Sbjct: 518 VDLEYEQFVQLRDRIAGQLSRLQKLAERIASLDALQSLATISAERRFVRPTVTDGFDMLV 577 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 +DGRHP+VE + P++AN +LS K S + L+TGPNM GKST++RQ AL+ Sbjct: 578 EDGRHPVVEAVM---DGAPYMANGTELS----KESQSMLLITGPNMAGKSTYMRQAALLC 630 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 +MAQ+GS+VPA A + +VD++F+R+G+AD+L G+STFMVEM + + +A+N+S VI Sbjct: 631 VMAQIGSFVPAKSATLPLVDRIFTRIGAADDLVGGQSTFMVEMKDIQVMTEKASNRSLVI 690 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DE+GRGT+T +G++IA A IEY+H+ C+ L++THFHEL+ L +SL NA + V + Sbjct: 691 IDELGRGTSTNEGMAIAQAVIEYVHDEIGCKALVSTHFHELSHLEQSLSSLSNACMAVRE 750 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILK 837 + + FL K++PG A SYG+ +LAGLP+++I RAY +L+ Sbjct: 751 DGDNVTFLRKLVPGAASSSYGVYCARLAGLPDSIIGRAYSLLE 793 >gi|299533233|ref|ZP_07046617.1| DNA mismatch repair protein MutS [Comamonas testosteroni S44] gi|298718763|gb|EFI59736.1| DNA mismatch repair protein MutS [Comamonas testosteroni S44] Length = 863 Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust. Identities = 299/883 (33%), Positives = 468/883 (53%), Gaps = 39/883 (4%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY ++K+ +PD+LVFYRMGDFYELFF DA +R L ITLT RG+ G+ IPM GVP Sbjct: 1 MMQQYFKLKADHPDTLVFYRMGDFYELFFGDAEKVTRLLDITLTTRGQTAGQPIPMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H +Y+ +LIK+G +AICEQ+ + K V R VVR+VTPGTLT+ +LLS Sbjct: 61 FHALENYLGRLIKMGESVAICEQV-----GEIGVGKGPVERKVVRVVTPGTLTDSELLSD 115 Query: 148 TDSNYLMAVARI-RTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSH 206 L+A+ R +AW+ ++ G ++ D L + + RI P E+I+S Sbjct: 116 KSEAILLALHTAGRQRVGLAWMAMTQGRIHMAECAADELGAWLSRISPSEVIYSAGVTER 175 Query: 207 AEYKSLFETLGNVAVA-----QPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAA 260 E ++LF + A++ +P+ FD + E ++ + ++ + + + A Sbjct: 176 FE-QALFAVKHSGAISCPLSPRPDWQFDSGLGERKLLELLGAASLKAWEAEGLPLAHGAG 234 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 AA +SY + TQ N I + + + + A R NLE+++TL G +L +D Sbjct: 235 AALLSYAEHTQGRNLTHIHAIQVQRDDELIALPLATRRNLELVKTLRGEDAPTLFSLLDS 294 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI---LKSSPDVPRS 377 +TG G RL + P + RL++I + P Q + LK DV R Sbjct: 295 CMTGMGSRLLKTWLLEPERNRKAAMQRLEAIGVLRGTGAGMAPWQALRAELKGVSDVERI 354 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN-DLPEELRGAVEKLKKLPQSLEKTLS 436 +R+ + + P+++ G+ + L ++ P + P+ + L+ Sbjct: 355 TARIALRQVRPRELV----GLSKTLEKAKLLAQSGQAPSAYLTQIFSDLIPPEGCAELLA 410 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + ++ RDGG + G DA LDE R++++ + L+ K T I NL+++ N Sbjct: 411 RAIHEEPAALVRDGGVIATGFDAELDELRAIQNNCDEFLLELEAKEKLLTGIPNLRVQFN 470 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 G++IEVT+S + +RF RQT+ N R+ T EL E++ +A AL Sbjct: 471 KVHGFYIEVTNSYKDAVP------ERFRRRQTLKNAERYITPELKAFEDKALSAQERALQ 524 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 E FE L + + L +Q IA +D+ LA + N+ P + ++ Sbjct: 525 REKFLFEQLLDQLQPHVPQLTRVAQAIAALDVLCTLAERSLTLNWAEPQFVSQPCIEIEA 584 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE + + SS FIAN ++ + ++ ++TGPNMGGKST++RQ ALIV++ Sbjct: 585 GRHPVVEARMAETSSGSFIANHTRMNL-----NTRMQIITGPNMGGKSTYMRQVALIVLL 639 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A MGSYVPA +G +D + +R+G+AD+LA+ +STFM+EM E A IL+ AT S V++D Sbjct: 640 ASMGSYVPAGACRLGPIDAIHTRIGAADDLANAQSTFMMEMTEAAQILHSATPHSLVLMD 699 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DGL++A LH+ + L ATH+ ELT+L K N + ++S Sbjct: 700 EIGRGTSTFDGLALASGIASQLHDKTKAFTLFATHYFELTELPAKAKAAVNVHVSAAESG 759 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY-YP 855 I+FLH++ G A SYGIQV KLAG+P V++ A L+ E N+ + L+ P Sbjct: 760 SDIVFLHEIQAGPASRSYGIQVAKLAGMPAGVLNHARHALEALESQAGENELQVNLFDAP 819 Query: 856 EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E+ ++ S D+ + +N D +SP AL+ LY +K Sbjct: 820 EL--VDASAAPSPLDQAMAD----VNPDALSPREALEVLYQLK 856 >gi|56419841|ref|YP_147159.1| DNA mismatch repair protein MutS [Geobacillus kaustophilus HTA426] gi|81675852|sp|Q5L0E5|MUTS_GEOKA RecName: Full=DNA mismatch repair protein mutS gi|56379683|dbj|BAD75591.1| DNA mismatch repair protein [Geobacillus kaustophilus HTA426] Length = 896 Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust. Identities = 285/826 (34%), Positives = 459/826 (55%), Gaps = 55/826 (6%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD--IPMCG 85 M++QY+ IK+ PD+ +F+R+GDFYELFFDDA+ A++ L ITLT R G D +PMCG Sbjct: 1 MIQQYLHIKAQYPDAFLFFRLGDFYELFFDDAIKAAQELEITLTSRD---GGDERVPMCG 57 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI++LI+ G+++AICEQ+E P AK +VRR VV+L+TPGTL E + L Sbjct: 58 VPYHSAQGYIEQLIEKGYKVAICEQVEDPKTAK-----GVVRREVVQLITPGTLMEGKGL 112 Query: 146 SPTDSNYLMAVARIR-TEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 + +++YL A+ + +A+ D+STG +++ S+ + +++ + REII + Sbjct: 113 TEKENHYLAALTPFADGTYGLAYADLSTGEVRLTLLSSWEEAANELHAVGAREIIVATD- 171 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE-KTAAAA 262 S E+ + AV+ + ++ + D +N G +Q + + AAA Sbjct: 172 -SGEEWVRELKERYGAAVSYED--------DTSLCDEWN----GVIGHVAQEKLRQAAAR 218 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYS 321 + Y+ +TQ + E + + +D ++ +LE++ T+ S R+ SLL +D + Sbjct: 219 LLHYLVRTQKRRLDHLQPAELYQVDHYMKMDRHSKLHLELVETVRSKGRKGSLLWLLDET 278 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +T GGRL + + PL D +I RLD + + ++ L+ D+ R + R+ Sbjct: 279 VTAMGGRLLKQWLDRPLIDRREIERRLDFVETLKTSYFERQELRDRLRGVYDIERLVGRV 338 Query: 382 KIGRGEPKDIAVIRD------GIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 G +D+ ++ +R + L L + L E L E + L +S++ Sbjct: 339 SYGNANARDLVQLKKSLLQVPALRQTVGALPLAEADKLCERLDPCEELVDLLERSIQ--- 395 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + P ++G ++DG D LD R K IA L+ K E T IK+LK+ + Sbjct: 396 -----EQPPLSVKEGNLIKDGYDKQLDRYRDASRNGKAWIAELEAKEREATGIKSLKVGY 450 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+IEVT + ++ + R+ +QT++N RF T EL + E I A ++ Sbjct: 451 NRVFGYYIEVTKPNLPLV-----PEGRYERKQTLANAERFITPELKEKEALILEAEEKSI 505 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E E F + + + L ++ IA +D+ + A ++ E Y RP +++ Sbjct: 506 ELEYELFVAIREQVKQYIPRLQTLAKAIAELDVLQSFATISDEYRYVRPQFSTERVLVIQ 565 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VEK L Q ++ NDC ++ ++ L+TGPNM GKST++RQ AL + Sbjct: 566 GGRHPVVEKVLGAQM---YVPNDCYMN-----REREMLLITGPNMAGKSTYMRQVALTAV 617 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+G +VPA A + I D++F+R+G+AD+L++G+STFMVEM+E + AT S ++ Sbjct: 618 MAQIGCFVPAERAVLPIFDQVFTRIGAADDLSAGQSTFMVEMLEARHAIAHATQNSLILF 677 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DG+++A A IEY+H+ + L +TH+HELT L +SL R N + + Sbjct: 678 DEIGRGTSTYDGMALAQAIIEYIHDHIGAKTLFSTHYHELTALERSLPRLSNVHARAIEE 737 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 N ++FLH++ G AD SYGI V +LAGLP ++I RA IL EK Sbjct: 738 NGKVVFLHQIADGPADKSYGIHVAELAGLPASLIERARAILAELEK 783 >gi|268318972|ref|YP_003292628.1| DNA mismatch repair protein MutS [Lactobacillus johnsonii FI9785] gi|262397347|emb|CAX66361.1| DNA mismatch repair protein MutS [Lactobacillus johnsonii FI9785] Length = 857 Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust. Identities = 291/889 (32%), Positives = 486/889 (54%), Gaps = 48/889 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K +TPMM+QY EIK PD+ +FYR+GDFYELF DDA+ ++ L +TLT R IP Sbjct: 4 KDTTPMMKQYYEIKEQYPDAFLFYRVGDFYELFEDDAIKGAQILELTLTHRSNKTKNPIP 63 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP + Y+ L++ G+++A+CEQ+E P +AK +V+R +++L+TPGT+ ++ Sbjct: 64 MAGVPHLAVDTYVNTLVEKGYKVALCEQLEDPKKAK-----GMVKRGIIQLITPGTMMQE 118 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSE 201 + DSNYL +V + + +A+ D+STG F ++ + + ++++ + RE++++ Sbjct: 119 RPDQAKDSNYLTSVISTNSGFGLAYSDLSTGETFSTHLADFEGVANELLSLQTREVVYN- 177 Query: 202 KELSH-AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 H + F N+ V++P S +A N+T + E A Sbjct: 178 ---GHLTDLNKDFLKKANITVSEPVEVEGEHAEISYVAQ--NLT--------NDAEIKAT 224 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTID 319 ++Y+ TQ + + + + L + ++NLE++++ S++ SL +D Sbjct: 225 KQLVAYLLSTQKRSLAHLQVAQSYEPTQYLQMSHTVQTNLELIKSAKTSKKMGSLFWLLD 284 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T GGRL I PL T+I R + + + + + LK D+ R Sbjct: 285 KTSTAMGGRLLKSWIERPLLSVTEITRRQEMVQALLDDYFTREKVIDSLKGVYDLERLTG 344 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G +++ + + + ILN L+ P L+ +++ L + + + + + Sbjct: 345 RIAFGSVNAREMLQLAHSLGAIPEILNALLETSNPH-LQNYAKQIDPL-KGIHDLIVNTI 402 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 D+ P +GG +R+G LD R + K+ ++ ++ E T I NLK+ +N Sbjct: 403 VDNPPLPTTEGGLIREGVSEQLDRYRDAMNNGKKWLSEMESHEREVTGINNLKVGYNKVF 462 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IEVT+S+ S + DR+ +QT++N R+ T +L + E I A + +E Sbjct: 463 GYYIEVTNSNKSKV-----PTDRYTRKQTLTNAERYITPDLKEHEALILEAEAKSTGLEY 517 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI-VKDGR 618 + F L + + +L ++ IA +D+ A ++++ NY RP I V +GR Sbjct: 518 DLFVKLREDVKKYIPALQKLAKQIASLDVLTNFATVSEQNNYVRPNFATDKQEINVVNGR 577 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ + ++ +I ND + D N ++L+TGPNM GKST++RQ ALI IMAQ Sbjct: 578 HPVVEQVM---TAGSYIPNDVKMD--QDTN---IFLITGPNMSGKSTYMRQMALIAIMAQ 629 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA A + I D++F+R+G+AD+L SG+STFMVEM E L AT +S V+ DEI Sbjct: 630 IGSFVPADSATLPIFDQIFTRIGAADDLISGQSTFMVEMSEANDALQHATKRSLVLFDEI 689 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGTAT DG+++A A ++YLH+ + L ATH+HELTDL ++LK N + ++ N Sbjct: 690 GRGTATYDGMALAGAIVKYLHDKVGAKALFATHYHELTDLDQTLKHLKNIHVGATEENGK 749 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL----YHHNQKDMRLYY 854 +IFLHK++PG AD SYGI V +LAGLP+ V+ A +LK EK + + L+ Sbjct: 750 LIFLHKILPGPADQSYGIHVAQLAGLPHKVLREATTMLKRLEKQGASELQPASEQLDLFV 809 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTLE 903 PE + S +S ++K +++I+ + L + +PL ++ V W E Sbjct: 810 PE---EASAPAISDDEKDVLDEIQNVYLADKTPLQVMEL---VAQWQQE 852 >gi|332298214|ref|YP_004440136.1| DNA mismatch repair protein mutS [Treponema brennaborense DSM 12168] gi|332181317|gb|AEE17005.1| DNA mismatch repair protein mutS [Treponema brennaborense DSM 12168] Length = 877 Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust. Identities = 299/898 (33%), Positives = 472/898 (52%), Gaps = 64/898 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY IK +PD ++F+R+GDFYE+F DDA+ SR L +TLT R PMCG Sbjct: 5 TPMMLQYRSIKEQHPDDVLFFRLGDFYEMFDDDAIEVSRLLNLTLTHRASQ-----PMCG 59 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H A YI +L+++G +IA+CEQ+ P G ++L R VV ++TPGT E++ L Sbjct: 60 IPYHAAKIYIARLLRLGKKIAVCEQVTMP-----SGPRTLAERKVVEIITPGTAVEEEYL 114 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH----DRLISDIMRIDPREIIFSE 201 + +N+L ++ + A+ID++T F ++ N + ++ R PRE++ + Sbjct: 115 DRSANNFLASLFCAHGKAGFAYIDVTTSSFSATSWNAADTAEEFAKELGRCAPRELLLPQ 174 Query: 202 KELSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFGSFSQV--EKT 258 A +S+ E G++AV+ P+ F +S R+ + + +F S ++V E Sbjct: 175 SLRETAAVQSVLERYGDIAVSYYPDWHFAAELSYKRLVSQFRTVNLRSF-SLTEVSPEVP 233 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKT 317 A + Y+ + + P I + ID ++R NLE++ L G+ + +LL++ Sbjct: 234 PAGFLLEYLSQNSNSSLPHITGIRVYRDSEFVIIDDSSRRNLELISNLRDGTAQYTLLES 293 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +++++T G R+ + SPLTD KI R + F+ ++ ++ L S DV R Sbjct: 294 VNHTVTAMGNRMIRSWLLSPLTDCAKIRDRQQRVASFVSRRDVLKSVRAELASILDVERL 353 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 R+ + R KD+ +R + + + + + + + A ++L + + Sbjct: 354 AGRIAMDRAHAKDVQALRASLEAWLRVRDCMSRLEFGGADTAAAKQLIDM-------IRD 406 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + +D T +G ++DG A LD R +++ I+ S + +T I NLK++ N Sbjct: 407 AILEDPSTVLTEGRMIKDGWSADLDHYRQVQNDFNGILDSYVEEEKAKTGIANLKVRFNR 466 Query: 498 NLGYFIEVTSSSASVLKKDLES-KDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 +GY+IEVT + L+S + FI R+++ N R+TT+ L +LE + +A + Sbjct: 467 LIGYYIEVT-------RGKLDSVPEHFILRRSLVNGDRYTTVRLQELEQELNSAGEKIIN 519 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 E F + + + L A+ IA ID + + A A + P +D S +F + Sbjct: 520 EEKRLFLEIRDTLKTSVPYLLTAAAEIAGIDAAASFAHAAALHEWVCPEVDGSDDFTIIG 579 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE L + F+ ND K L+TGPNM GKST+LRQNALIV++ Sbjct: 580 GRHPVVELHLP---AGEFVPNDSSFD-----TEKKFALITGPNMAGKSTYLRQNALIVLL 631 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ GS+VPA AHIGIVDK+F RVG++DNLA G STF+VEM ETA IL AT +S VI+D Sbjct: 632 AQTGSFVPAEKAHIGIVDKVFCRVGASDNLARGESTFLVEMTETAHILRSATRRSLVIMD 691 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 E+GRGT+T DGLSIAWA EYL RC+ L ATH+HELT + L+V + Sbjct: 692 EVGRGTSTEDGLSIAWAVSEYLLNALRCKTLFATHYHELTRMEHPA--LQQLCLEVLERE 749 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYH-----HNQK--- 848 ++FL K+ G +SYGI V +LAG+P VI RA ++L + H + Sbjct: 750 GQVVFLKKIKAGATANSYGIHVAQLAGVPGPVILRARELLSRIQAAAGAGTELHTESLSD 809 Query: 849 ------------DMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 D ++ K L +++L +++I D M+PL AL+ + Sbjct: 810 VPASAGTVAPPPDTAVFSDSAAQKPVAPGLFSDEELILDEILSAEPDSMTPLEALQCV 867 >gi|284162159|ref|YP_003400782.1| DNA mismatch repair protein MutS [Archaeoglobus profundus DSM 5631] gi|284012156|gb|ADB58109.1| DNA mismatch repair protein MutS [Archaeoglobus profundus DSM 5631] Length = 817 Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust. Identities = 289/829 (34%), Positives = 468/829 (56%), Gaps = 63/829 (7%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 ++ TPMMRQY IK D+L+F+R+GDFYELF +DA +AS+ LGI LT R K Sbjct: 1 MEELTPMMRQYYRIKERYKDALLFFRVGDFYELFDEDAKIASQELGIVLTSRDKKH---- 56 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PM GVP H YI++LI+ G+++AICEQ+E P +AK LVRR VVR++TPGTL E Sbjct: 57 PMAGVPHHAVFPYIKRLIEKGYKVAICEQVEDPSKAK-----GLVRREVVRVITPGTLIE 111 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIF-KISTSNHDRLISDIMRIDPREIIFS 200 ++LL+ ++NYLM++ + R + IA ID+STG F + + D +I+++++ P E I Sbjct: 112 EELLTK-ENNYLMSIYKGRI-YGIALIDVSTGEFLTTALESFDEVIAEVLKFSPAECIVP 169 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTV-DTFGSFSQVE--- 256 E FE L + + +V H++S+ + ++ + + F ++E Sbjct: 170 EG----------FEELEEL---KKHVNVVHTLSQDEYSFKESLEILKECVQDFERLELEE 216 Query: 257 --KTAAAAAISYIKKTQMVNKPTI---GYPEREDIQSTLFIDSAARSNLEILRTL-SGSR 310 A +A+ Y+K++ ++ I Y R+ + +DS NLE+ R L GSR Sbjct: 217 ECVRACGSALRYVKESLLIKTMKIRLQKYVSRD----YMILDSTTLKNLEVFRNLIDGSR 272 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 +L+ +D + T G RL + PL + +I RL+++ + L ++++L+ Sbjct: 273 RGTLIDVLDKTATAMGSRLLKRWLQRPLLNVDEIEKRLEAVEELFEKSFLRQSLREVLRE 332 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS 430 D+ R +SR++ + +D+ +++ +++ + + F N L+ VE LK L Sbjct: 333 VYDLERIVSRIEYRKANARDLVALKNSLKA-VEKIKSFTFN--SRRLKEIVEGLKALRDV 389 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 +E + + + D+ P +DGG +RDG LDE R ++ + I +++ + + T I Sbjct: 390 VE-LIENAIVDNPPINIKDGGIIRDGYSRELDELRRIKVDHENFIKNIEERERKATGIDK 448 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ +N +GY+IEV S + K + K QT+ N RFT EL D+E ++ Sbjct: 449 LKVGYNTVIGYYIEVPKSKLRFVPKHYKRK------QTLVNAERFTIPELEDIEEKVLAC 502 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 +E E F + + ++ + + + IA +D+ A +A NY +P +++ Sbjct: 503 DEKIKALEYELFNEVREEVAKRVDEIRECAFKIAELDVLSTFAEVAVLYNYTKPKVNDGY 562 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 + I++DGRHP VE T K FI ND +L+ ++ ++TGPNM GKST+LR Sbjct: 563 DIIIRDGRHPTVELTTK------FIPNDVNLT-----RDSRILIITGPNMAGKSTYLRMT 611 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI IMAQ+G +VPASYA IG+VD++F+R+G+ D++ G S+FMVE+ E IL AT + Sbjct: 612 ALITIMAQIGCFVPASYAAIGVVDRIFTRIGTVDDITRGYSSFMVEIDEVGKILKNATKR 671 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S ++LDE+G+ T T DGLS+AWA IEYLH+ + L ATH+HEL++L +L+ N Sbjct: 672 SLILLDEVGKSTGTKDGLSLAWAIIEYLHKIG-AKTLFATHYHELSELESTLEGVKNYHF 730 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF 839 ++ + E I F K+ G SYGI++ ++ LP VI RAY+I ++ Sbjct: 731 RIIEG-ETIEFDRKIKRGACTESYGIKIAEMV-LPKEVIDRAYEIYRSL 777 >gi|227888714|ref|ZP_04006519.1| DNA mismatch repair protein MutS [Lactobacillus johnsonii ATCC 33200] gi|227850741|gb|EEJ60827.1| DNA mismatch repair protein MutS [Lactobacillus johnsonii ATCC 33200] Length = 857 Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust. Identities = 290/888 (32%), Positives = 486/888 (54%), Gaps = 46/888 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K +TPMM+QY EIK PD+ +FYR+GDFYELF DDA+ ++ L +TLT R IP Sbjct: 4 KDTTPMMKQYYEIKEQYPDAFLFYRVGDFYELFEDDAIKGAQILELTLTHRSNKTKNPIP 63 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP + Y+ L++ G+++A+CEQ+E P +AK +V+R +++L+TPGT+ ++ Sbjct: 64 MAGVPHLAVDTYVNTLVEKGYKVALCEQLEDPKKAK-----GMVKRGIIQLITPGTMMQE 118 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSE 201 + DSNYL +V + + +A+ D+STG F ++ + + ++++ + RE++++ Sbjct: 119 RPDQAKDSNYLTSVISTNSGFGLAYSDLSTGETFSTHLTDFEGVANELLSLQTREVVYNG 178 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 + + F N+ V++P S +A N+T + E A Sbjct: 179 R---LTDLNKDFLKKANITVSEPVEVEGEHAEISYVAQ--NLT--------NDAEIKATK 225 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDY 320 ++Y+ TQ + + + + L + ++NLE++++ S++ SL +D Sbjct: 226 QLVAYLLSTQKRSLAHLQVAQSYEPTQYLQMSHTVQTNLELIKSAKTSKKMGSLFWLLDK 285 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGRL I PL T+I R + + + + + LK D+ R R Sbjct: 286 TSTAMGGRLLKSWIERPLLSVTEITRRQEMVQALLDDYFTREKVIDSLKGVYDLERLTGR 345 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + G +++ + + + ILN L+ P L+ +++ L + + + + + Sbjct: 346 IAFGSVNAREMLQLAHSLGAIPEILNALLETSNPH-LQNYAKQIDPL-KGIHDLIVNTIV 403 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D+ P +GG +R+G LD R + K+ ++ ++ E T I NLK+ +N G Sbjct: 404 DNPPLPTTEGGLIREGVSEQLDRYRDAMNNGKKWLSEMESHEREVTGINNLKVGYNKVFG 463 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IEVT+S+ S + DR+ +QT++N R+ T +L + E I A + +E + Sbjct: 464 YYIEVTNSNKSKV-----PTDRYTRKQTLTNAERYITPDLKEHEALILEAEAKSTGLEYD 518 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI-VKDGRH 619 F L + + +L ++ IA +D+ A ++++ NY RP I V +GRH Sbjct: 519 LFVKLREDVKKYIPALQKLAKQIASLDVLTNFATVSEQNNYVRPNFATDKQEINVVNGRH 578 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE+ + ++ +I ND + D N ++L+TGPNM GKST++RQ ALI IMAQ+ Sbjct: 579 PVVEQVM---TAGSYIPNDVKMD--QDTN---IFLITGPNMSGKSTYMRQMALIAIMAQI 630 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPA A + I D++F+R+G+AD+L SG+STFMVEM E L AT +S V+ DEIG Sbjct: 631 GSFVPADSATLPIFDQIFTRIGAADDLISGQSTFMVEMSEANDALQHATKRSLVLFDEIG 690 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A A ++YLH+ + L ATH+HELTDL ++LK N + ++ N + Sbjct: 691 RGTATYDGMALAGAIVKYLHDKVGAKALFATHYHELTDLDQTLKHLKNIHVGATEENGKL 750 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL----YHHNQKDMRLYYP 855 IFLHK++PG AD SYGI V +LAGLP+ V+ A +LK EK + + L+ P Sbjct: 751 IFLHKILPGPADQSYGIHVAQLAGLPHKVLREATTMLKRLEKQGASELQPASEQLDLFVP 810 Query: 856 EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTLE 903 E + S +S ++K +++I+ + L + +PL ++ V W E Sbjct: 811 E---ETSVPAISDDEKDVLDEIQNVYLADKTPLQVMEL---VAQWQQE 852 >gi|220909183|ref|YP_002484494.1| DNA mismatch repair protein MutS [Cyanothece sp. PCC 7425] gi|219865794|gb|ACL46133.1| DNA mismatch repair protein MutS [Cyanothece sp. PCC 7425] Length = 907 Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust. Identities = 293/851 (34%), Positives = 457/851 (53%), Gaps = 62/851 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TPM+R Y+E+K +P +L+ YR+GDFYE FF DA +R L + LT + GK +G+ + + Sbjct: 48 TPMLRHYVEVKEQHPHALLLYRVGDFYETFFQDACTIARELELVLTSKEGGKEIGR-VAL 106 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G+P H + Y Q L++ G+ IAIC+Q+E P A+ LVRR V R+ TPGT+ E+ Sbjct: 107 AGIPHHALDRYCQLLVERGYAIAICDQMEDPALAQ-----GLVRREVTRIFTPGTVLEEG 161 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEK 202 LL +N+L A+ + W +A DISTG F+ + D L+ +++R+ P EI+ + Sbjct: 162 LLPARANNFLAAIVLVGDHWGLAHADISTGEFRTTQGQQQDTLVQELLRLQPSEILLPTE 221 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVF---------FDHSISESRIADYYNITTVDTFGS-F 252 E+ ++ P F F + R+ + + + +++ G Sbjct: 222 TPDLNRMLRPGESSPHLPEGLPTQFCYTLRSRQDFAQPQARQRLLNTFALRSLEGLGCEH 281 Query: 253 SQVEKTAAAAAISYIKKTQ----MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-S 307 + AA + Y+ +TQ + +P Y + + L +D R NLEI +T+ Sbjct: 282 LPLAVRAAGGLLVYLAETQKETPIPLQPLCTY----SLSAYLILDHQTRRNLEITQTVRD 337 Query: 308 GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI 367 GS SLL +D + T G R + PL D +I+ R ++I + + L +Q + Sbjct: 338 GSFYGSLLWALDRTCTAMGSRTLRRWLLQPLLDREQIDDRQETIQELLDHTPLRQDLQTL 397 Query: 368 LKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL 427 L+ D+ R R G P+D+A + D + ++ L + P ++ L+ + Sbjct: 398 LRQVYDLERLAGRAGSGTASPRDLAGLADSLGRLNHLATLAMNARSP-----YLQALQTV 452 Query: 428 PQSLEK---TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAE 484 P LE+ L + L D P +GG +R LD+ R + ++ IA+L+ + Sbjct: 453 PPQLEQLAAKLRTHLVDSPPLLLSEGGLIRPQVHLPLDQLRQQVSEDQQWIANLETLEKQ 512 Query: 485 ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLE 544 T I LK+ N GY+I V+ + + + ++ +I +QT++N R+ T +L + E Sbjct: 513 RTGIATLKVGFNKAFGYYISVSRAKSEQVPRE------YIRKQTLTNEERYITPDLKERE 566 Query: 545 NRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP 604 RI N A +E E F L + EQ+ + + +A +D+ LA +A Q YCRP Sbjct: 567 VRILNTQEQANKLEQEIFTQLRAEVGEQAALIRQVAGAVAAVDVLAGLAEVAIYQGYCRP 626 Query: 605 IIDNSTNFIVKDGRHPIVEKTLK--------------QQSSKPFIANDCDLSCPNDKNSG 650 I ++ +++ G HP+VE++L + S P I + LS P+ Sbjct: 627 QISDTRQILIQAGCHPVVEQSLPPGFFVANSTVLGQGAEGSVPPILAEEALSAPD----- 681 Query: 651 KLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGR 710 L +LTGPN GKS +LRQ LI +MAQ+GS+VPA A +GI D++F+RVG+ D+LA+G+ Sbjct: 682 -LIVLTGPNASGKSCYLRQVGLIQLMAQVGSFVPARAAVLGICDRIFTRVGAVDDLATGQ 740 Query: 711 STFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLAT 770 STFMVEM ETA+ILN A+++S V+LDEIGRGTAT DGL+IAW+ EYL R R + AT Sbjct: 741 STFMVEMNETANILNHASDRSLVLLDEIGRGTATFDGLAIAWSVAEYLATEIRARTIFAT 800 Query: 771 HFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVIS 830 H+HEL +L+ L N + V + IIFLH+V PG A SYGI+ G+LAGLP VI Sbjct: 801 HYHELNELATLLPNVANYQVMVKAEADQIIFLHQVKPGGASRSYGIEAGRLAGLPAVVIQ 860 Query: 831 RAYDILKTFEK 841 RA +++ E+ Sbjct: 861 RARQVMQQIEQ 871 >gi|331267175|ref|YP_004326805.1| DNA mismatch repair protein MutS [Streptococcus oralis Uo5] gi|326683847|emb|CBZ01465.1| DNA mismatch repair protein MutS [Streptococcus oralis Uo5] Length = 844 Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust. Identities = 296/883 (33%), Positives = 478/883 (54%), Gaps = 58/883 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYVDIKKQYPDAFLLFRMGDFYELFYEDAINAAQILEISLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI+ G+++AI EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPYHSAQQYIDVLIEQGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSSK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEKEL 204 + +N+L+A+ R ++ +A++D+ TG F ++ L+ +I + RE++ +L Sbjct: 121 PDSQNNFLVALDRDGNQFGLAYMDLVTGDFYVTGLLDFTLVCGEIRNLKAREVVLG-YDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E + L + V + F D + +SR+AD VE+ AA+ + Sbjct: 180 SEEEEQILSRQMNLVLSYEKEGFEDLHLLDSRLAD---------------VEQAAASKLL 224 Query: 265 SYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 Y+ +TQM KP I Y +I+ L +D A +++L+++ SG ++ SL +D Sbjct: 225 QYVHRTQMRELNHLKPVIRY----EIKDFLQMDYATKTSLDLVENARSGKKQGSLFWLLD 280 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL I PL D +I R D + F+ + + + LK D+ R S Sbjct: 281 ETKTAMGMRLLRSWIHRPLIDKKRIVQRQDVVQVFLDHFFERSDLTDSLKGVYDIERLAS 340 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G+ PKD+ + + S I + + P L +E+L +P+ LE +S+ + Sbjct: 341 RVSFGKTNPKDLLQLATTLSSVPRIRAILEGMEQPA-LAYLIEQLDAIPE-LESLISAAI 398 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + + P +GG +R G D +LD+ R + + IA ++ K E + I LKI +N Sbjct: 399 APEAPHVITEGGIIRTGFDETLDKYRRVLREGTSWIAEIEAKERENSGISTLKIDYNKKD 458 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+ VT+S + F + T+ N RF T EL +E + A + +E Sbjct: 459 GYYFHVTNSQLGNVPS------HFFRKATLKNSERFGTEELARIEGDMLEAREKSANLEY 512 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F + + + + L +Q IA +D+ +LA++A+ Q+ RP + ++ GRH Sbjct: 513 EIFMRIREEVSKYIQRLQALAQGIATVDVLQSLAVVAETQHLIRPEFGEDSQIDIQKGRH 572 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 +VEK + Q+ +I N ++ + L+TGPNM GKST++RQ A+ +MAQ+ Sbjct: 573 AVVEKVMGAQT---YIPNSIQMA-----EDTSIQLITGPNMSGKSTYMRQLAMTAVMAQL 624 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPA AH+ I D +F+R+G+AD+L SG+STFMVEM+E + ++ AT S ++ DE+G Sbjct: 625 GSYVPAESAHLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANNAISHATKDSLILFDELG 684 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A + IEY+HE + L ATH+HELT L SL+ N + + + + Sbjct: 685 RGTATYDGMALAQSIIEYIHEHIGAKTLFATHYHELTSLESSLEHLVNVHVATLEQDGQV 744 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 FLHK+ PG AD SYGI V K+AGLP +++RA IL E + M QT Sbjct: 745 TFLHKIEPGPADKSYGIHVAKIAGLPAELLARADKILTQLESQGGESPAPMS------QT 798 Query: 860 KESKNNLSKND----KLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +S D + ++ L++ M+P+ A+ L +K Sbjct: 799 SAVTEQMSLFDAPEEHPILAELAKLDVYNMTPMQAMNVLVELK 841 >gi|134095352|ref|YP_001100427.1| DNA mismatch repair protein MutS [Herminiimonas arsenicoxydans] Length = 870 Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust. Identities = 306/893 (34%), Positives = 464/893 (51%), Gaps = 54/893 (6%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY+ IK+ +P++L+FYRMGDFYE+FF+DA ASR LGITLT+RG G I M GVP Sbjct: 1 MMQQYLRIKAEHPETLLFYRMGDFYEVFFEDAEKASRLLGITLTQRGSSNGNPIKMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H + Y+ KL+K+G IA+CEQI P +K V R V+R++TPGTL++ LL Sbjct: 61 FHAVDQYLSKLVKLGESIALCEQIGDPAT-----SKGPVERKVLRVITPGTLSDSDLLPE 115 Query: 148 TDSNYLMAV----ARIRTEWAIAWIDISTGIFKISTSNHD------RLISDIMRIDPREI 197 L+A+ R +AW+ +++G K+ D RL ++ RI P E+ Sbjct: 116 KSEQPLLALYSTTQRKTITIGLAWLSMASGALKLMEFTTDARNAATRLKHELERIAPAEV 175 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS-FSQVE 256 + S S + N V P+ FD + + + ++T+ FG+ Sbjct: 176 LLPG---SIDGPDSDYAFAKNTTV--PDWHFDIAHGSKALHEQLKVSTLTGFGAEHLNAA 230 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS--L 314 AA A + Y + TQ + E + +D+A R NLE+ T+ G S L Sbjct: 231 IGAAGALLRYAQATQGKGLQHVRALTVETENEFIGLDAATRRNLELTETIRGQDNNSATL 290 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 +D+ T G RL + D R +IN ++ + L S PDV Sbjct: 291 FSLLDHCRTAMGSRLLRHWLHHARRDQAVARARHAAINALMRTDACTG-LASTLASVPDV 349 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGI------RSGINILNLFLKNDLPEELRGAVEKLKKLP 428 R +R+ + P+D+A +R G+ R+ +++ N D L + P Sbjct: 350 ERIATRIALQSARPRDLAGMRGGLQQLPSLRAYVSMCN----QDADAPLLKTIHDALATP 405 Query: 429 QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 + ++ + RDGG + G DA LDE R L + + + + L+ + T I Sbjct: 406 SECLDLVERAIALEPAAMVRDGGVIARGFDAELDELRGLSENAGQFLVDLETRERTRTGI 465 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 NL++++N G++IEVT + D + RQT+ N R+ T EL E++ Sbjct: 466 NNLRVEYNKVHGFYIEVTHGQTDKVPDD------YRRRQTLKNAERYITPELKAFEDKAL 519 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 +A AL E ++ + + + +L N + +A +D +ALA A N+C P + Sbjct: 520 SAQERALAREKYLYDQVLQQMAQHIGTLQNIAHALAQLDTLVALAEHALRHNWCAPQLIA 579 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 ++ GRHP+VE +++ FIANDC L+ N +L L+TGPNMGGKST++R Sbjct: 580 EPTIAIEQGRHPVVENHIER-----FIANDCLLN-----NESRLLLITGPNMGGKSTYMR 629 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q ALI ++A +GS+VPA+ A IG +D++F+R+G+AD+LA GRSTFMVEM E+A+ILN AT Sbjct: 630 QVALITLLAYVGSFVPATSATIGPIDRIFTRIGAADDLAGGRSTFMVEMTESAAILNGAT 689 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA 788 S V++DE+GRGT+T DGL++AWA +L ++ R L ATH+ ELT L + N Sbjct: 690 ENSLVLMDEVGRGTSTFDGLALAWAIARHLIDSTRSFTLFATHYFELTQLPEVHPSAANV 749 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 L + + I+FLH V G A SYG+QV +LAG+P VI A L T E Sbjct: 750 HLSAVEHKDSIVFLHAVQAGPASQSYGLQVAQLAGVPQAVIRAARKHLATLEANSMQATP 809 Query: 849 DMRLYY-PE--IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 L+ P+ I T + + +++ L E + +N D +SP AL LY +K Sbjct: 810 QFDLFADPDHLIPTSDVETAMAQPSAL-DEALADINPDALSPRDALDALYRLK 861 >gi|312866817|ref|ZP_07727030.1| DNA mismatch repair protein MutS [Streptococcus parasanguinis F0405] gi|311097600|gb|EFQ55831.1| DNA mismatch repair protein MutS [Streptococcus parasanguinis F0405] Length = 849 Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust. Identities = 301/884 (34%), Positives = 478/884 (54%), Gaps = 55/884 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYPDAFLLFRMGDFYELFYEDAVNAAQILEISLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI+ G+++AI EQ+E P EAK +V+R VV+++TPGT+ D Sbjct: 67 VPYHSAQQYIDVLIEQGYKVAIAEQMEDPKEAK-----GVVKREVVQVITPGTVV-DSTK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEKEL 204 +++N+L+A+ R ++ +A++D+ TG F+++T N ++ +I + RE++ EL Sbjct: 121 PDSENNFLVALDRSGNDYGLAYMDLVTGEFQVTTLNDFSMVCGEIRNLRAREVVLG-YEL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAA 263 E + V V+Q N+ H E+ + D V G S++EK A Sbjct: 180 PEQEER--------VFVSQMNLLLSHV--ETALDD------VQLLGDQLSELEKKTAGKL 223 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 + Y+ +TQM + +I L +D A +++L++ +G + SL +D + Sbjct: 224 LQYVYQTQMRELSHLKKAHHYEICDFLQMDFATKASLDLTENARTGKKHGSLYWYLDETK 283 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGRL I PL D +I R D I F+ + + + LK D+ R SR+ Sbjct: 284 TAMGGRLLRSWIQKPLVDLKRIRERQDIIQVFMDHFFERSDLTDSLKGVYDIERLASRVS 343 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 G+ PKD+ + D + I ++ L P L + +L +LP+ L + ++S ++ + Sbjct: 344 FGKINPKDLLQLGDTLGHVPTIKSILLGIGDPV-LDVLIARLDELPE-LHRLITSAIAPE 401 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 +G +R G D LD+ R + IA ++ K E + I LKI +N GY+ Sbjct: 402 ASAVITEGNIIRTGFDEQLDQYRVVLRDGTGWIAEIEAKEREASGITGLKIDYNKKDGYY 461 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 VT+S S + F + T+ N RF T EL +E + A + +E F Sbjct: 462 FHVTNSQLSHVPA------HFFRKATLKNSERFGTEELARIEGDMLEAREKSANLEYTIF 515 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 + + + + L +Q IA +D+ +LA +A+ Q RP + GRHP+V Sbjct: 516 MRIREEVGKYIQRLQQLAQAIATVDVLQSLASVAESQQLNRPFFHEERRIAIDKGRHPVV 575 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 EK + QS +I N + D + L+TGPNM GKST++RQ A+IVI+AQ+GSY Sbjct: 576 EKVMGAQS---YIPNSIFMDEERD-----IQLITGPNMSGKSTYMRQLAIIVILAQIGSY 627 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA A + I D +++R+G+AD+L SG+STFMVEM+E + +AT QS ++ DE+GRGT Sbjct: 628 VPAQKAELPIFDAIYTRIGAADDLVSGQSTFMVEMMEANHAIRKATPQSLILFDELGRGT 687 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFL 802 AT DG+++A + IEY+H+ + L ATH+HELT LS++L R N + + + + FL Sbjct: 688 ATYDGMALAQSIIEYIHDRTGAKTLFATHYHELTALSETLSRLENVHVATLERDGQVTFL 747 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKES 862 HK+ PG AD SYGI V K+AGLP ++ RA IL E Q + P+ KE Sbjct: 748 HKIEPGPADKSYGIHVAKIAGLPEELLKRADAILTKLEG--QAQQVPLADATPK---KEV 802 Query: 863 KNNLSKNDKLFVE--------KIKCLNLDEMSPLTALKTLYAVK 898 + +++ LF E ++K L+L M+P+ + + +K Sbjct: 803 SSQVAEQMSLFEEETENTVITELKNLDLYNMTPMEVMMAVAELK 846 >gi|311107769|ref|YP_003980622.1| DNA mismatch repair protein MutS [Achromobacter xylosoxidans A8] gi|310762458|gb|ADP17907.1| DNA mismatch repair protein MutS [Achromobacter xylosoxidans A8] Length = 894 Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust. Identities = 306/915 (33%), Positives = 470/915 (51%), Gaps = 83/915 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ +K+ L+FYRMGDFYE+F++DA +R L +TLTKRG G IPM G Sbjct: 17 TPMMQQYLRLKAEAGPLLLFYRMGDFYEMFYEDAERGARLLNLTLTKRGSSNGTPIPMAG 76 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +PVH Y+ +L+ +G IAICEQI P +K V R +VR+VTPGTLT+D LL Sbjct: 77 LPVHAMEQYLARLVAMGESIAICEQIGDPAT-----SKGPVERRIVRIVTPGTLTDDALL 131 Query: 146 SPTDSNYLMAVARIRTEWA----IAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 L AV T A +AW+++++G F+++ +L S++ RI P EII +E Sbjct: 132 PAKADRALAAVFVGGTARAPRAGLAWLNLASGEFRVTECAPAQLESELHRIAPAEIICAE 191 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 AE+ FE P+ F+ + + + ++ T+ F AA Sbjct: 192 S----AEFDFPFE---GARARVPDWHFEGDSARAHLLAHFKTDTLAGFDIEDMPAGICAA 244 Query: 262 AAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 A+ Y +TQ + E + +D R NLE+ +TLSG +L +D Sbjct: 245 GALLRYAARTQSQALAHVQSLSAERPGQYVLLDPVTRRNLELTQTLSGEDSPTLFSLLDG 304 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPI--------------------L 360 T G RL + PL ++ + R +I+ + + L Sbjct: 305 CRTPMGSRLLRRWLHHPLRENEQALARQQAISALLAGRMDVEQTFGAAGFGAAGFGSAGL 364 Query: 361 INPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGA 420 + ++ L + PD+ R +RL + P+++A +RD +++ LP LR Sbjct: 365 LESLRGALNAFPDIERIAARLALRSVRPRELASLRDALQA------------LPA-LRDL 411 Query: 421 VEKLKKLPQ--------SLEKTLSSMLSDDL---PTFK-RDGGFLRDGADASLDETRSLR 468 VE + P+ S++ L+++L + P RDGG L G DA LDE R L Sbjct: 412 VEPMADSPRLGELISHLSVDPALAALLVRAIAAEPAVAIRDGGVLAAGFDAELDELRGLA 471 Query: 469 DQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQT 528 + L+ + E T I NL+++ N G++IEVT + + +D + RQT Sbjct: 472 ADGGDFLVQLEARERERTGISNLRVEFNRVHGFYIEVTKGQTAKVPED------YRRRQT 525 Query: 529 MSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDI 588 + N R+ T EL E+++ +A + AL E FE L + + E L + + +A +D Sbjct: 526 LKNAERYITPELKTWEDKVLSAQDRALAREKWLFEQLLDVLAEHVRPLSDCAAALAELDT 585 Query: 589 SIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKN 648 ALA A+ ++ P + + ++ GRHP+VE +++ F N C L + Sbjct: 586 LAALAEHARRHDWIAPELSEQADIDIEAGRHPVVEHAIER-----FTPNGCRL-----EP 635 Query: 649 SGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLAS 708 + ++ L+TGPNMGGKST++RQ ALI ++A++GS+VPAS A IG +D++F+R+G+AD+LA Sbjct: 636 ARRMLLITGPNMGGKSTYMRQVALIALLARIGSFVPASRARIGKIDRIFTRIGAADDLAG 695 Query: 709 GRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLL 768 GRSTFM+EM E A+IL+ +T S V++DEIGRGT+T DGL++AWA L NR L Sbjct: 696 GRSTFMMEMTEAAAILSASTPNSLVLMDEIGRGTSTYDGLALAWAIACRLLAHNRALTLF 755 Query: 769 ATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTV 828 ATH+ ELT L N L ++S GI+FLH+V G A SYGIQV + AG+P V Sbjct: 756 ATHYFELTRLPAEQPASANVHLAAAESAGGIVFLHEVREGPASRSYGIQVAQRAGVPAAV 815 Query: 829 ISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKL-----FVEKIKCLNLD 883 I +A L+ E + ++ + D L E++ ++ D Sbjct: 816 IRQATRELERLEAQGAPTPQLGLFAAAADADAQAYAEADRTDDLEALDALREELAAVDPD 875 Query: 884 EMSPLTALKTLYAVK 898 ++P AL LY +K Sbjct: 876 SLTPREALDALYRLK 890 >gi|257876210|ref|ZP_05655863.1| DNA mismatch repair protein mutS [Enterococcus casseliflavus EC20] gi|257810376|gb|EEV39196.1| DNA mismatch repair protein mutS [Enterococcus casseliflavus EC20] Length = 853 Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust. Identities = 286/877 (32%), Positives = 479/877 (54%), Gaps = 39/877 (4%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM QY+ IK+ D+ +FYR+GDFYELF +DA+ A++ L +TLT R K+ + IPMC Sbjct: 10 NTPMMEQYLSIKAQYQDAFLFYRLGDFYELFNEDAVKAAQILELTLTSRNKNAEEPIPMC 69 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H A++YI LI+ G+++AICEQ+E P + K +V+R VV+L+TPGT+ + + Sbjct: 70 GVPYHAASNYIDTLIEQGYKVAICEQVEDP-----KTTKGMVKREVVQLITPGTVMDSKG 124 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 LS ++N+L AV + + A++D+STG K + + + ++++ + +E++ + Sbjct: 125 LSAKENNFLTAVLQQGERFGFAYVDLSTGELKAAQLEDEEAVVNEAAALQTKEVVLCSE- 183 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ-VEKTAAAA 262 + E+L + NV F + A++ +T SQ +EK Sbjct: 184 --------IPESLQTTLTNRLNVVFSKQETLEENAEFQFLTE-----PLSQELEKVVTGK 230 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYS 321 +SY+ TQ + I L +D ++ NLE+ +++ +G ++ +LL +D + Sbjct: 231 LLSYLAITQKRSLAHIQQAVEYQPDHALKMDHYSKFNLELTQSIRTGKKQGTLLWLLDET 290 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T GGRL + + PL KI R + + + + +Q+ L D+ R + R+ Sbjct: 291 KTAMGGRLLKQWLDRPLIQPKKITARQEMVQSLLDSFFERADLQEALTKVYDMERLVGRV 350 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 G +D+ ++ + + ++ L+ E + +L L L + + + + Sbjct: 351 AFGNVNGRDLLQLKSSLEQ-VPLIAQLLQGINRGEWNDLLLELTPL-DDLVALIEAAIDE 408 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 D P +G ++DG LDE R+ K+ +A L+ + T +KNLK+ N GY Sbjct: 409 DAPLQITEGNIIKDGFHQQLDEYRTAMRNGKQWLAELEANERQATGVKNLKVGFNRVFGY 468 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IE+T ++ L R+ +QT++N RF + EL LE I A ++ +E Sbjct: 469 YIEITKANLVNL-----DTSRYERKQTLANAERFISPELKKLETLILEAEEKSVDLEYRL 523 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 F + + + L ++ ++ +D+ + A +++ Y RP + + DGRHP+ Sbjct: 524 FLDVREEVKKSITRLQKLAKAVSAVDVLQSFATVSERYQYVRPTVAKKRAVSIIDGRHPV 583 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VEK L Q +I N S D+ + ++ L+TGPNM GKST++RQ AL+VIMAQ+G Sbjct: 584 VEKVLGHQE---YIPN----SIVMDEET-EILLITGPNMSGKSTYMRQFALLVIMAQIGC 635 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA A + I D++F+R+G++D+L +G+STFMVEM+E L AT S ++ DE+GRG Sbjct: 636 FVPAQSAEMPIFDRIFTRIGASDDLIAGQSTFMVEMMEANQALRHATPNSLILFDELGRG 695 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 TAT DG+++A A IEY+H+ + L +TH+HELT L + L N + + ++F Sbjct: 696 TATYDGMALAQAIIEYIHKEVHAKTLFSTHYHELTVLDEELAHLRNVHVGAVEKEGEVVF 755 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKE 861 LHK++ G AD SYGI V K+AGLP+ ++ RA ILK E+ H + E Q Sbjct: 756 LHKMMEGPADKSYGIHVAKIAGLPSALLQRAATILKALEE--HEPTVQPKPVVEESQQLS 813 Query: 862 SKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + +S + ++++K LNL EM+P+ AL TLY ++ Sbjct: 814 LFSEVSTEEIGVIDQLKKLNLLEMTPMDALNTLYELQ 850 >gi|149921078|ref|ZP_01909537.1| DNA mismatch repair protein [Plesiocystis pacifica SIR-1] gi|149818082|gb|EDM77539.1| DNA mismatch repair protein [Plesiocystis pacifica SIR-1] Length = 930 Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust. Identities = 306/866 (35%), Positives = 457/866 (52%), Gaps = 68/866 (7%) Query: 29 MRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPV 88 MRQY++IK PD++V +RMGDFYELFF+DA+ L I +T R K +PM GVP Sbjct: 1 MRQYLDIKRRYPDAIVMFRMGDFYELFFEDAVTVGPVLDIAVTTRDKKAEDPVPMAGVPY 60 Query: 89 HTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPT 148 H Y++ L++ G+++AI EQ+ESP EA+KR +VRR VVR+VTPG L +++ L Sbjct: 61 HAIGGYLRTLVERGYKVAIAEQMESPEEARKRKGPKIVRREVVRVVTPGALLDEEHLRGG 120 Query: 149 DSNYLMAV-------------------------------------ARIRTEW-----AIA 166 + NYL+A+ A+ + E A+A Sbjct: 121 EPNYLVALIPGPKGAAMVDGELPALPSAPAPGKPKSRKKSKALTSAKPKGEGEGMAAALA 180 Query: 167 WIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEKELSHAEYKSLFETLG-NVAVAQP 224 +DIS+ F + + L +++ R+ PREI+ E A ++ L LG + P Sbjct: 181 ALDISSSEFVVMACGRLEDLRAELARLAPREILAPE-----AVHEWLRSELGPDCPALAP 235 Query: 225 NVFFDHSISES----RIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGY 280 + + R+ ++ + E AAA A++Y + TQ + Sbjct: 236 GASLAGAADPASLLPRVGHLFDESGSRQQTGLRDEEAYAAATALAYAEATQPGQTLLLHR 295 Query: 281 PEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLT 339 R + L +D + NLE+ RTL R SLL ID++ T G R+ + +PL Sbjct: 296 LRRHEPARHLVLDETSLRNLEVFRTLRDAKRRGSLLWAIDHTRTSMGARMLRAWLGAPLL 355 Query: 340 DSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIR 399 D I R D + I L +Q LK DV R +R ++G P+++ +R + Sbjct: 356 DIAAIRARQDGVEVLIAEARLRAELQSRLKDVRDVVRLAARARLGTISPRELGALRTSLG 415 Query: 400 SGINI---LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDG 456 + + L+ EL ++ K L + + K L L DD P RDGG +R Sbjct: 416 AVPELAERLSELGSRRTDRELPAVLDLGKDLLRDVYKLLDDTLVDDPPAVARDGGMIRSS 475 Query: 457 ADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKD 516 AD L E R L + +A+++ + E T I L+IKHNN GYF+EV+ + + K+ Sbjct: 476 ADEVLAEQRELASGGRDKLAAIEAREREATDIPKLRIKHNNVFGYFLEVSKAHVKKVPKN 535 Query: 517 LESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESL 576 ++ +QT+ N R+ T EL LE +I +A AL E FE + + + E L Sbjct: 536 ------WVRKQTLVNAERYVTDELAKLEAKILDAQTIALQREQALFESVRAKVSDAGERL 589 Query: 577 DNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIA 636 +A +D+ LA +A+ +Y RP + + +GRH +VE+ L + F+ Sbjct: 590 VVLGDALARLDVLAGLAEVAEAYDYVRPELAEEPVLDINEGRHVVVERML---GAGRFVP 646 Query: 637 NDCDLSCPNDK--NSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVD 694 ND +L+ ++ +LW++TGPNMGGKST +RQ ALI I+A +GS+VPA+ A +G++D Sbjct: 647 NDTELAAGTHGSVDAARLWVVTGPNMGGKSTIMRQVALIAILAHVGSFVPAAAARVGLID 706 Query: 695 KLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWAT 754 ++F+RVG+AD+L G STFMVEM ETA I+ QA+ +S V+LDEIGRGTAT DGL++AWA Sbjct: 707 RVFTRVGAADDLGRGESTFMVEMRETAQIVAQASPRSLVLLDEIGRGTATFDGLALAWAI 766 Query: 755 IEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSY 814 E+LH+ CR + ATH+HEL L L N + V + I+FLH+V G A SY Sbjct: 767 TEHLHDQVGCRTMFATHYHELCGLEARLAGVRNVHVAVHEHRGKIVFLHRVEQGAAGRSY 826 Query: 815 GIQVGKLAGLPNTVISRAYDILKTFE 840 GIQVG+LAGLP ++ RA IL+ E Sbjct: 827 GIQVGRLAGLPARLLRRAQRILERLE 852 >gi|327182935|gb|AEA31382.1| DNA mismatch repair protein MutS [Lactobacillus amylovorus GRL 1118] Length = 866 Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust. Identities = 276/820 (33%), Positives = 451/820 (55%), Gaps = 36/820 (4%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S TPMM QY EIK PD+ +FYR+GDFYELF DDA+ ++ L +TLT R IPM Sbjct: 5 SMTPMMEQYYEIKKQYPDAFLFYRVGDFYELFEDDAVKGAQILELTLTHRSNKTKNPIPM 64 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP + Y+ L++ G+++A+CEQ+E P +AK +V+R +++LVTPGT+ + Sbjct: 65 AGVPHLAVDTYVNTLVEKGYKVALCEQLEDPKKAK-----GMVKRGIIQLVTPGTMMNEG 119 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEK 202 DSNYL +V ++ + +A+ D+STG I+ + + + ++++ + RE++++ Sbjct: 120 PNDAKDSNYLTSVVTTKSGFGLAYSDLSTGEIYATHLKSFEAVSNELLSLRTREVVYNG- 178 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 E F N+ V+ P S + N+T ++ EK A Sbjct: 179 --PLTEQNKDFMHKANITVSAPTPIEGEHAEISYVEQ--NLT--------NKAEKEATRQ 226 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYS 321 + Y+ TQ + + + ++ L + ++NLE++ + +G + SL +D + Sbjct: 227 LVGYLLSTQKRSLAHLQIAKSYEVNQYLQMSHTVQNNLELVASAKTGKKMGSLFWVLDKT 286 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T GGRL + +A PL + +IN R + + + LK D+ R R+ Sbjct: 287 HTAMGGRLLKQWLARPLLNVDEINHREEMVQALLDGYFTRENAIDALKGVYDLERLTGRI 346 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 G +++ + +++ IL+ ++D + L +K+ L + + + +S+ L Sbjct: 347 AFGNVNARELLQLSRSLQAVPVILDALNQSD-SQVLEDFAQKIDPL-KGVAEMISTTLVK 404 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 D P +GG +R+G D LD + + K+ +A ++ ++T I NLK+ +N GY Sbjct: 405 DPPILTTEGGLIREGVDKQLDRYKDAMNNGKKWLAQMEADERQKTGIDNLKVGYNKVFGY 464 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +I+V++ + S + DR+ +QT++N R+ T EL + EN I A + +E + Sbjct: 465 YIQVSNGNKSKV-----PLDRYTRKQTLTNAERYITPELKEHENLILEAQTRSTDLEYDL 519 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI-VKDGRHP 620 F L + + +L +A +D+ A +A++ NYCRP I V +GRHP Sbjct: 520 FVKLREEVKKYIPALQKLGGQLAALDVYCGFATVAEQNNYCRPHFHTDNQDIDVVNGRHP 579 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + ++ +I ND + + ++L+TGPNM GKST++RQ ALI IMAQ+G Sbjct: 580 VVEKVM---TAGSYIPNDVKMDSATN-----IFLITGPNMSGKSTYMRQMALIAIMAQVG 631 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA A + I D++F+R+G+AD+L SG+STFMVEM E L AT +S V+ DEIGR Sbjct: 632 SFVPADSADLPIFDQIFTRIGAADDLISGQSTFMVEMSEANDALQYATKRSLVLFDEIGR 691 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A ++YLH+ + L ATH+HELT L ++L N + ++ N +I Sbjct: 692 GTATYDGMALAGAIVKYLHDKVGAKALFATHYHELTALDETLDHLKNIHVGATEENGKLI 751 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 FLHK++PG AD SYGI V +LAGLP V+ A +LK E Sbjct: 752 FLHKILPGPADQSYGIHVAQLAGLPRAVLREATKLLKRLE 791 >gi|264679624|ref|YP_003279531.1| DNA mismatch repair protein MutS [Comamonas testosteroni CNB-2] gi|262210137|gb|ACY34235.1| DNA mismatch repair protein MutS [Comamonas testosteroni CNB-2] Length = 863 Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust. Identities = 299/883 (33%), Positives = 468/883 (53%), Gaps = 39/883 (4%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY ++K+ +PD+LVFYRMGDFYELFF DA +R L ITLT RG+ G+ IPM GVP Sbjct: 1 MMQQYFKLKADHPDTLVFYRMGDFYELFFGDAEKVTRLLDITLTTRGQTAGQPIPMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H +Y+ +LIK+G +AICEQ+ + K V R VVR+VTPGTLT+ +LLS Sbjct: 61 FHALENYLGRLIKMGESVAICEQV-----GEIGVGKGPVERKVVRVVTPGTLTDSELLSD 115 Query: 148 TDSNYLMAVARI-RTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSH 206 L+A+ R +AW+ ++ G ++ D L + + RI P E+I+S Sbjct: 116 KSEAILLALHTAGRQRVGLAWMAMTQGRIHMAECAADELGAWLSRIAPSEVIYSAGVTER 175 Query: 207 AEYKSLFETLGNVAVA-----QPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAA 260 E ++LF + A++ +P+ FD + E ++ + ++ + + + A Sbjct: 176 FE-QALFAVKHSGAISCPLSPRPDWQFDSGLGERKLLELLGAASLKAWEAEGLPLAHGAG 234 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 AA +SY + TQ N I + + + + A R NLE+++TL G +L +D Sbjct: 235 AALLSYAEHTQGRNLTHIHAIQVQRDDELIALPLATRRNLELVKTLRGEDAPTLFSLLDS 294 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI---LKSSPDVPRS 377 +TG G RL + P + RL++I + P Q + LK DV R Sbjct: 295 CMTGMGSRLLKTWLLEPERNRKAAMQRLEAIGVLRGTGAGMPPWQALRAELKGVSDVERI 354 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN-DLPEELRGAVEKLKKLPQSLEKTLS 436 +R+ + + P+++ G+ + L ++ P + P+ + L+ Sbjct: 355 TARIALRQVRPRELV----GLSKTLEKAKLLAQSGQAPSAYLTQIFSDLIPPEGCAELLA 410 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + ++ RDGG + G DA LDE R++++ + L+ K T I NL+++ N Sbjct: 411 RAIHEEPAALVRDGGVIATGFDAELDELRAIQNNCDEFLLELEAKEKLLTGIPNLRVQFN 470 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 G++IEVT+S + +RF RQT+ N R+ T EL E++ +A AL Sbjct: 471 KVHGFYIEVTNSYKDAVP------ERFRRRQTLKNAERYITPELKAFEDKALSAQERALQ 524 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 E FE L + + L +Q IA +D+ LA + N+ P + ++ Sbjct: 525 REKFLFEQLLDQLQPHVPQLTRVAQAIAALDVLCTLAERSLTLNWAEPQFVSQPCIEIEA 584 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE + + SS FIAN ++ + ++ ++TGPNMGGKST++RQ ALIV++ Sbjct: 585 GRHPVVEARMAETSSGSFIANHTRMNL-----NTRMQIITGPNMGGKSTYMRQVALIVLL 639 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A MGSYVPA +G +D + +R+G+AD+LA+ +STFM+EM E A IL+ AT S V++D Sbjct: 640 ASMGSYVPAGACRLGPIDAIHTRIGAADDLANAQSTFMMEMTEAAQILHSATPHSLVLMD 699 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DGL++A LH+ + L ATH+ ELT+L K N + ++S Sbjct: 700 EIGRGTSTFDGLALASGIASQLHDKTKAFTLFATHYFELTELPAKAKAAVNVHVSAAESG 759 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY-YP 855 I+FLH++ G A SYGIQV KLAG+P V++ A L+ E N+ + L+ P Sbjct: 760 SDIVFLHEIQAGPASRSYGIQVAKLAGMPAGVLNHARHALEALESQAGENELQVNLFDAP 819 Query: 856 EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E+ ++ S D+ + +N D +SP AL+ LY +K Sbjct: 820 EL--VDASAAPSPLDQAMAD----VNPDALSPREALEVLYQLK 856 >gi|239906766|ref|YP_002953507.1| DNA mismatch repair protein MutS [Desulfovibrio magneticus RS-1] gi|239796632|dbj|BAH75621.1| DNA mismatch repair protein MutS [Desulfovibrio magneticus RS-1] Length = 887 Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust. Identities = 300/893 (33%), Positives = 468/893 (52%), Gaps = 51/893 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM+ QY+ K+ +PD+L+FYRMGDFYELFF+DA+ A+R L ITLT R IPMCG Sbjct: 10 TPMLEQYLRAKAEHPDALLFYRMGDFYELFFEDAITAARELQITLTTRNPGADSPIPMCG 69 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ +L++ G +A+C+QIE P +AK LV+R V R++TPGT ED L Sbjct: 70 VPHHAAEGYLAELLEKGFSVAVCDQIEDPRQAK-----GLVKRAVTRVLTPGTAVEDGNL 124 Query: 146 SPTDSNYLMAVARIRTEWA--IAWIDISTGIFK-ISTSNHDRLISDIMRIDPREIIFSEK 202 + N+L A+ E A +AW+D STG + + + + RL +++I PRE++ E Sbjct: 125 RAKEHNFLAALYYDADERAGGLAWVDCSTGEWSGLHSRDAARLWQWMVKIGPRELLLPE- 183 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 + + +V P FD + ++ ++ + + + A Sbjct: 184 --GVTPPRDIPLAGVHVTTVPPRPHFDFAAGRDKVLSAQSVADLAALDCTDKPQLVRAMG 241 Query: 263 AI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDY 320 A+ +Y+ T M + +G + ++ + +D NLEI R L G + + +L +D Sbjct: 242 ALLTYLSATYMRDLGHLGPFKPVNLGRHMLLDEVTERNLEIFRRLDGRKGRGTLWHVLDR 301 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGRL + P D I+ +++ F ++ L +++ L D+ R ++R Sbjct: 302 TQTPMGGRLLETMLRQPWLDLGPIHETQEAVALFAEDESLRRLVREDLAGVYDLERLITR 361 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + +GR P+D +R + + + L L + A+ L + LS L Sbjct: 362 IFLGRAVPRDFTALRQSL-AALPALRQRLSGAASAKAASALLSGWDDLDDLFELLSRALV 420 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D P +GG R G LDE L + ++ + L + E+ + LK+ N G Sbjct: 421 DSPPVLVTEGGLFRAGYHPELDELLDLAEHGEQKLQELLAREQEDGNLPKLKLGFNRVFG 480 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+ E++ ++ + F RQT++N R+ T L +LE+++ + +E Sbjct: 481 YYFELSKAAGY-------APAHFERRQTLANCERYVTPALKELEDKLLASGEKRKTLEYN 533 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F L + + E + + +A +D+ LA A ++ RP + ++ GRHP Sbjct: 534 LFRELRDHVAGLRERVMETAARVARLDVWQGLAEAAVAGDWTRPELHAGQAIAIRAGRHP 593 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE + +I ND L S ++ L+TGPNM GKST LRQ ALI I+AQ+G Sbjct: 594 VVEAVTGVGN---YIPNDVSLD-----ESTRMLLITGPNMAGKSTVLRQTALIAILAQIG 645 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA+ A +G+VD++F RVG++DNLA G+STFMVEM+ETA IL QA +S VILDEIGR Sbjct: 646 SFVPAAKASVGLVDRVFCRVGASDNLAQGQSTFMVEMMETARILRQAGKKSLVILDEIGR 705 Query: 741 GTATLDGLSIAWATIEYL---HETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 GTAT DGL++AWA +E L + + R L ATH+HELT L + NA + V + Sbjct: 706 GTATFDGLALAWAVVEELCGRDDGHGVRTLFATHYHELTALEGRIPGLKNANIAVKEWKG 765 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE------KLYHHNQKDMR 851 IIFL +++PG AD SYG++V KLAG+P V+ RA +IL E + N++ + Sbjct: 766 DIIFLRRLLPGPADRSYGVEVAKLAGVPRNVVKRAREILGELESCRDPAQAARGNRERGQ 825 Query: 852 LYYPEI----------QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 P + E++ +LS L ++++ L LD M+PL AL L Sbjct: 826 PSLPGLFAVQPPHAAADETEARPDLS---ALLLDELSRLELDRMTPLEALTLL 875 >gi|298370528|ref|ZP_06981844.1| DNA mismatch repair protein MutS [Neisseria sp. oral taxon 014 str. F0314] gi|298281988|gb|EFI23477.1| DNA mismatch repair protein MutS [Neisseria sp. oral taxon 014 str. F0314] Length = 859 Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust. Identities = 312/887 (35%), Positives = 465/887 (52%), Gaps = 52/887 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM+QY+ IKS + D LVFYRMGDFYELF DDA+ A++ L ITLT RG+ G I M G Sbjct: 7 SPMMQQYLAIKSQHADKLVFYRMGDFYELFLDDAVEAAKLLDITLTTRGQMDGVPIKMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ +L+K+G +A+CEQ+ + K V R VVR+VTPGTLT+ L Sbjct: 67 VPFHAAEQYLARLVKMGKSVAVCEQV-----GEVGAGKGPVERKVVRIVTPGTLTDAAFL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 ++N + AV + AIAW + +G FK + D+L ++ R+ EI+ E Sbjct: 122 EDKETNRIAAVNADKKHIAIAWASLQSGEFKTKLTTADKLADELARLQAAEILLPEG--- 178 Query: 206 HAEYKSL---FETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG---SFSQVEKTA 259 KSL F+T + F + +Y+ + FG + A Sbjct: 179 ----KSLPNGFQTTSANITRLNSWQFAADAGAKLLTEYFGCQDLHGFGLDGKEHEAAVGA 234 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A A ++YI+ TQ + + E + +D+A R NLEI +TLSG + +L +D Sbjct: 235 AGALLNYIRLTQNLMPQHLDGISLETDSQYIGMDAATRRNLEITQTLSGKKSPTLFSILD 294 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 T G RL A + PL I R ++++ +Q LK+ D+ R + Sbjct: 295 GCATHMGSRLLALWLHHPLRSRAHIRARQEAVDALGSQ---YETLQGRLKNIADIERIAA 351 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL-PQSL--EKTLS 436 R+ +G P+D+A +RD + + I +L E +E LK + P++L +TL Sbjct: 352 RIAVGNARPRDLAALRDSLFALSEI-------ELSAEGSSLLETLKAVFPETLPVAETLK 404 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + + + + +DGG + G A LDE R +++ + L+ + E T + LK++ N Sbjct: 405 AAVMPEPAVWLKDGGVINQGYSAELDELRHIQNHGDEFLLDLEARERERTGLSTLKVEFN 464 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 G++IE++ A D + RQT+ N RF T EL E+++ A AL Sbjct: 465 RVHGFYIELSKVQAEQAPAD------YQRRQTLKNAERFITPELKTFEDKVLTAQEQALA 518 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E FE L I L A++ A +D+ A A E+ + P + +++ Sbjct: 519 LEKRLFEALLKDIQTTLPQLQKAAKAAAALDVLSTFAATAAERGFVCPEFADYPVIHIEN 578 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE+ ++ F AN L + +L LLTGPNMGGKST++RQ A IV+M Sbjct: 579 GRHPVVEQQVRH-----FTANHTRLD-----HKHRLMLLTGPNMGGKSTYMRQVAHIVLM 628 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A GS+VPA A IG +D++F+R+G++D+LAS RSTFMVEM ETA IL+ AT+QS V++D Sbjct: 629 AHTGSFVPADAAQIGPIDQIFTRIGASDDLASNRSTFMVEMSETAYILHHATDQSLVLMD 688 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 E+GRGT+T DGL++A A E+L + N+ L ATH+ ELT L ++ N L + Sbjct: 689 EVGRGTSTFDGLALAHAIAEHLLQKNKSFSLFATHYFELTKLPEAYATAVNMHLSALEQG 748 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYH--HNQKDMRLYY 854 + I+FLH + PG A SYGI V KLAGLPN + A L E Q D+ Sbjct: 749 QDIVFLHHIEPGPASKSYGIAVAKLAGLPNRALKAAQKHLDELEAQAAAVRPQLDIFSMM 808 Query: 855 P-EIQTKESKNNLSKNDK--LFVEKIKCLNLDEMSPLTALKTLYAVK 898 P E + +E + + N VE + + D ++P AL LY +K Sbjct: 809 PSENRVEEEEIECADNPPADALVEALAQIQPDNLTPREALDALYRLK 855 >gi|294793674|ref|ZP_06758811.1| DNA mismatch repair protein MutS [Veillonella sp. 3_1_44] gi|294455244|gb|EFG23616.1| DNA mismatch repair protein MutS [Veillonella sp. 3_1_44] Length = 877 Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust. Identities = 288/830 (34%), Positives = 466/830 (56%), Gaps = 35/830 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TPMM QY++IKS + L+F+R+GDFYELF +DAL+ASR L ITLT R + P Sbjct: 3 KKQTPMMEQYLDIKSRYSEELLFFRLGDFYELFNEDALVASRELNITLTGRPTGDEERTP 62 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP H A YI+ L+K G+++AICEQ+E P + K +V+R+V+++VTPGT+ + Sbjct: 63 MCGVPFHAAESYIETLVKKGYKVAICEQLEDP-----KAVKGIVKRDVIKVVTPGTVMTE 117 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTG--IFKISTSNHDR--LISDIMRIDPREII 198 +N+L ++ W + + D+STG I+ T R + + P EII Sbjct: 118 NGNDARSNNFLSLFYMVKDTWILVFSDVSTGEVIWHRITDCEKRSDMYDALSMYRPSEII 177 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK- 257 E + + + E + V P F ++ +A+ V FG +E+ Sbjct: 178 LPEGTILPQDIQDFIENQFSNVVFSP---FSTYYTQREVAE----KAVTHFGDLGLMEED 230 Query: 258 --TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSL 314 A + Y++ I Y + + + L +D+++ +LEI L G ++ +L Sbjct: 231 VWEALGYMLLYLEDIIKSEISHINYVHQLSVGNRLILDTSSLRHLEITHNLRDGGQKGTL 290 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D ++T G RL + + SPLTD +I R +++ I + I+ L D Sbjct: 291 LDVLDRTLTPMGARLLKQWLESPLTDINQIQRRQAAVSELITRGAERSHIRNFLDCIYDF 350 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R + R++ G P+D+ +R+ + +I N+ L L E+++ + + Sbjct: 351 ERIVGRVETGSVSPRDLTALRESLAVLPDIKNV-LGTCSSLALTSINERMQD-HKDIYDL 408 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L +++ +DG ++DG +A LDE RSL S++ +A ++ E T + +K Sbjct: 409 LCRAITEQPALTLKDGRVIKDGFNADLDELRSLATNSEQWLAKMEADIKEATGLSKIKTG 468 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+ EV+ S K + D FI +QT++N R+ T EL + E +I +A + Sbjct: 469 YNKVFGYYFEVSHS------KSEQVPDYFIRKQTLANAERYITPELKEFEIKILSAKDKI 522 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E E ++ L N I + + ++ +A +D+ +LA++ E+NY P I + + Sbjct: 523 IALEHELYQQLRNDIKLVIKDVQETARALADLDVLCSLALVGYEENYICPTIVMNGQINI 582 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 +DGRHP++EK LK++ F+ ND L+ +++ L+TGPNM GKST++RQ A+++ Sbjct: 583 RDGRHPVIEKFLKREV---FVPNDIVLNHDDEE----FLLITGPNMAGKSTYMRQAAILM 635 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMAQ+GS++PA A I VD++F+RVG++D++++G+STFMVEM E A IL AT+ S +I Sbjct: 636 IMAQIGSFIPAREASISPVDRIFTRVGASDDISTGQSTFMVEMKEVAYILENATHNSLII 695 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDEIGRGT+T DGLSIA A +E++ + + L ATH+HEL L +S + N T+ V + Sbjct: 696 LDEIGRGTSTFDGLSIAQAVVEHICKHIHSKTLFATHYHELICLEESYSKLKNYTVAVKE 755 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYH 844 + + FL ++I G AD SYGI V +LAGLPN+V+ RA IL++ E H Sbjct: 756 KGKDVAFLRRIIKGGADRSYGIHVARLAGLPNSVLKRAEVILESLEDQSH 805 >gi|296875587|ref|ZP_06899658.1| DNA mismatch repair protein MutS [Streptococcus parasanguinis ATCC 15912] gi|296433384|gb|EFH19160.1| DNA mismatch repair protein MutS [Streptococcus parasanguinis ATCC 15912] Length = 849 Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust. Identities = 299/884 (33%), Positives = 475/884 (53%), Gaps = 55/884 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYPDAFLLFRMGDFYELFYEDAVTAAQILEISLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI+ G+++AI EQ+E P EAK +V+R VV+++TPGT+ D Sbjct: 67 VPYHSAQQYIDVLIEQGYKVAIAEQMEDPKEAK-----GVVKREVVQVITPGTVV-DSTK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEKEL 204 +++N+L+A+ R ++ +A++D+ TG F+++T N ++ +I + RE++ EL Sbjct: 121 PDSENNFLVALDRSGNDFGLAYMDLVTGEFQVTTLNDFSMVCGEIRNLRAREVVLG-YEL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAA 263 E + V V+Q N+ H E+ + D V G S++EK A Sbjct: 180 PEQEER--------VFVSQMNLLLSHV--ETALDD------VQLLGDQLSELEKKTAGKL 223 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 + Y+ +TQM + +I L +D A +++L++ +G + SL +D + Sbjct: 224 LRYVHQTQMRELSHLKKAHHYEICDFLQMDFATKASLDLTENARTGKKHGSLYWYLDETK 283 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGRL I PL D +I R D I F+ + + + LK D+ R SR+ Sbjct: 284 TAMGGRLLRSWIQKPLVDLKRIRERQDIIQVFMDHFFERSDLTDSLKGVYDIERLASRIS 343 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 G+ PKD+ + D + I ++ L P L + +L +LP+ L + ++S ++ + Sbjct: 344 FGKINPKDLLWLGDTLGHVPTIKSILLGIGDPV-LDVLIARLDELPE-LHRLITSAIAPE 401 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 +G +R G D LD+ R + IA ++ K E + I LKI +N GY+ Sbjct: 402 ASAVITEGNIIRTGFDEQLDQYRVVLRDGTGWIAEIEAKEREASGITGLKIDYNKKDGYY 461 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 VT+S S + F + T+ N RF T EL +E + A + +E F Sbjct: 462 FHVTNSQLSHVPA------HFFRKATLKNSERFGTEELARIEGDMLEAREKSANLEYTIF 515 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 + + + + L +Q IA +D+ +LA +A+ Q RP+ + GRHP+V Sbjct: 516 MRIREEVGKYIQRLQQLAQAIATVDVLQSLASVAESQQLNRPLFHEERRITIDKGRHPVV 575 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 EK + QS +I N + D + L+TGPNM GKST++RQ A+IVI+AQ+GSY Sbjct: 576 EKVMGAQS---YIPNSIFMDEERD-----IQLITGPNMSGKSTYMRQLAIIVILAQIGSY 627 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA A + I D +++R+G+AD+L SG+STFMVEM+E + +AT QS ++ DE+GRGT Sbjct: 628 VPAQRAELPIFDAIYTRIGAADDLVSGQSTFMVEMMEANHAIRKATPQSLILFDELGRGT 687 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFL 802 AT DG+++A + IEY+H+ + L ATH+HELT LS++L N + + + + FL Sbjct: 688 ATYDGMALAQSIIEYIHDRTGAKTLFATHYHELTALSETLSHLENVHIATLERDGQVTFL 747 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKES 862 HK+ PG AD SYGI V K+AGLP ++ RA IL E Q KE Sbjct: 748 HKIEPGPADKSYGIHVAKIAGLPEELLERADAILTKLE-----GQAQQVPLVDATPKKEV 802 Query: 863 KNNLSKNDKLFVE--------KIKCLNLDEMSPLTALKTLYAVK 898 + +++ LF E ++K L+L M+P+ + + +K Sbjct: 803 SSQVAEQMSLFEEETENAVITELKNLDLYNMTPMEVMMAVAELK 846 >gi|294791813|ref|ZP_06756961.1| DNA mismatch repair protein MutS [Veillonella sp. 6_1_27] gi|294457043|gb|EFG25405.1| DNA mismatch repair protein MutS [Veillonella sp. 6_1_27] Length = 877 Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 288/830 (34%), Positives = 465/830 (56%), Gaps = 35/830 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TPMM QY++IKS + L+F+R+GDFYELF +DAL+ASR L ITLT R + P Sbjct: 3 KKQTPMMEQYLDIKSRYSEELLFFRLGDFYELFNEDALVASRELNITLTGRPTGDEERTP 62 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP H A YI+ L+K G+++AICEQ+E P + K +V+R+V+++VTPGT+ + Sbjct: 63 MCGVPFHAAESYIETLVKKGYKVAICEQLEDP-----KAVKGIVKRDVIKVVTPGTVMTE 117 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTG--IFKISTSNHDR--LISDIMRIDPREII 198 +N+L ++ W + + D+STG I+ T R + + P EII Sbjct: 118 NGNDARSNNFLSLFYMVKDTWILVFSDVSTGEVIWHRITDCEKRSDMYDALSMYRPSEII 177 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK- 257 E + + + E + V P F ++ +A+ V FG +E+ Sbjct: 178 LPEGTILPQDIQDFIENQFSNVVFSP---FSTYYTQREVAE----KAVTHFGDLGLMEED 230 Query: 258 --TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSL 314 A + Y++ I Y + + + L +D+++ +LEI L G ++ +L Sbjct: 231 VWEALGYMLLYLEDIIKSEISHINYVHQLSVGNRLILDTSSLRHLEITHNLRDGGQKGTL 290 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D ++T G RL + + SPLTD +I R +++ I + I+ L D Sbjct: 291 LDVLDRTLTPMGARLLKQWLESPLTDINQIQRRQAAVSELITRGAERSHIRNFLDCIYDF 350 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R + R++ G P+D+ +R+ + +I N+ L L E+++ + + Sbjct: 351 ERIVGRVETGSVSPRDLTALRESLVVLPDIKNV-LGTCSSLALTSINERMQD-HKDIYDL 408 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L +++ +DG ++DG +A LDE RSL S++ +A ++ E T + +K Sbjct: 409 LCRAIAEQPALTLKDGRVIKDGFNADLDELRSLATNSEQWLAKMEADIKEATGLSKIKTG 468 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+ EV+ S K + D FI +QT++N R+ T EL + E +I +A + Sbjct: 469 YNKVFGYYFEVSHS------KSEQVPDYFIRKQTLANAERYITPELKEFEIKILSAKDKI 522 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E E ++ L N I + + ++ +A +D+ +LA++ E+NY P I + + Sbjct: 523 IALEHELYQQLRNDIKLVIKDVQETARALADLDVLCSLALVGYEENYICPTIVMNGQINI 582 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 +DGRHP++EK LK++ F+ ND L + + + L+TGPNM GKST++RQ A+++ Sbjct: 583 RDGRHPVIEKFLKREV---FVPNDIVL----NHDEEEFLLITGPNMAGKSTYMRQAAILM 635 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMAQ+GS++PA A I VD++F+RVG++D++++G+STFMVEM E A IL AT+ S +I Sbjct: 636 IMAQIGSFIPAREASISPVDRIFTRVGASDDISTGQSTFMVEMKEVAYILENATHNSLII 695 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDEIGRGT+T DGLSIA A +E++ + + L ATH+HEL L +S + N T+ V + Sbjct: 696 LDEIGRGTSTFDGLSIAQAVVEHICKHIHSKTLFATHYHELICLEESYSKLKNYTVAVKE 755 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYH 844 + + FL ++I G AD SYGI V +LAGLPN+V+ RA IL++ E H Sbjct: 756 KGKDVAFLRRIIKGGADRSYGIHVARLAGLPNSVLKRAEVILESLEDQSH 805 >gi|120602482|ref|YP_966882.1| DNA mismatch repair protein MutS [Desulfovibrio vulgaris DP4] gi|166232120|sp|A1VDD9|MUTS_DESVV RecName: Full=DNA mismatch repair protein mutS gi|120562711|gb|ABM28455.1| DNA mismatch repair protein MutS [Desulfovibrio vulgaris DP4] Length = 905 Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 319/932 (34%), Positives = 482/932 (51%), Gaps = 84/932 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM QY+ IK PD+L+FYRMGDFYELFFDDA +R L I LT R + PMCG Sbjct: 9 TPMFEQYLRIKEDYPDALLFYRMGDFYELFFDDAETTARELQIALTCRNPNAELKAPMCG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H YI +L+ G+R+AICEQIE P EAK LV+R V R++TPGT+ +D L Sbjct: 69 VPYHAVEGYISQLLDKGYRVAICEQIEDPKEAK-----GLVKRAVTRVLTPGTVIDDANL 123 Query: 146 SPTDSNYLMAVARIRTEW-------AIAWIDISTGIFK-ISTSNHDRLISDIMRIDPREI 197 + NYL A+ W A AW+D+STG + + + L ++ PRE+ Sbjct: 124 DAKEHNYLGALF-----WNQDAEAGAFAWVDVSTGEWSGLYSRKLAELWQWAQKMAPREL 178 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQ--PNVFFDHSISESRIADYYNITTVDTFGSFSQV 255 + E + A TLG + FD R+ + + + G + Sbjct: 179 LLPEGVDTPA-----MATLGTTQTVRVPARSHFDLKSGTERVMRAQGVADLGSLGLEGKP 233 Query: 256 EKT-AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR-EQS 313 E A AA ++Y+ +TQ + + ++ L ID NLE+ L G + + Sbjct: 234 ELVRACAALLAYLAQTQKQELSHLAPFKPLNLGRHLIIDEVTERNLELFHRLDGRKGPGT 293 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T GGRL ER+ P ++ I + + Q+ + ++ L D Sbjct: 294 LWHILDRTLTPMGGRLLEERMHHPWREAGPIRETQQVVEWLFQDDVRREALRTALDLVYD 353 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEEL--RGAVEKLKKLPQSL 431 + R +R+ + R PKD +R + + + + PE A LP+ L Sbjct: 354 LERLSTRIFLNRATPKDFIALRQSLSALPAVRATLERPANPEGTYPTDAETSGDTLPKPL 413 Query: 432 EKTLSSM-------------LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASL 478 LS+ L+D+ P +GG R G D LDE L + + A L Sbjct: 414 SDMLSAWDDLADYADLLRRALTDNPPHLVTEGGLFRPGFDPDLDELLDLAEHGE---ARL 470 Query: 479 QLKYAEETKIKNL---KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRF 535 Q AEE + L K+ +N GYF E++ + A + + F+ RQT++N RF Sbjct: 471 QELLAEEQTVSGLPKLKLGYNRVFGYFFELSRAGADSVP------EHFVRRQTLANAERF 524 Query: 536 TTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAIL 595 TT L +LE ++ +AT+ +E F+ L + + E + + ++A +D +LA + Sbjct: 525 TTERLKELEEKLVSATDRRKTLEYRLFQSLRDTVAEARPRVLFMADMLAHLDFWQSLADV 584 Query: 596 AKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLL 655 A+ + RP + + ++++GRHP+VE Q S F+ ND + ++K +L L+ Sbjct: 585 ARRNGWVRPDVHTGHDIVIREGRHPVVEA---MQGSASFVPNDLRM---DEKR--RLLLI 636 Query: 656 TGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMV 715 TGPNM GKST LRQ A+I ++AQMG++VPA A IGI D++FSRVG++DNLA G+STFMV Sbjct: 637 TGPNMAGKSTVLRQTAIICLLAQMGAFVPAREASIGIADRIFSRVGASDNLAQGQSTFMV 696 Query: 716 EMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRG----LLATH 771 EM+ETA IL QA+ +S VILDEIGRGT+T DG+++AWA +E L T R G L ATH Sbjct: 697 EMMETARILRQASKRSLVILDEIGRGTSTFDGMALAWAVVEEL--TRRAGGGIRTLFATH 754 Query: 772 FHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISR 831 +HE+T L + HN + + + N I+FL +++PG AD SYGI+V +LAG+P++V+ R Sbjct: 755 YHEITSLEGRIPGVHNMNIAIREWNGDIVFLRRLVPGPADKSYGIEVARLAGVPHSVVQR 814 Query: 832 AYDILKTFEKLYHH----NQKDMRLYYP---------EIQTKESKNNLSKNDKLFVEKIK 878 A ++L E+ N R P ++ T + S + + ++ Sbjct: 815 ARELLADLERTRDAARGTNSAPSRQTLPGLDLPSKQEQVDTIVAPPPCSGVEHPLLVALR 874 Query: 879 CLNLDEMSPLTALKTLYAVKAWTLEKYSTDED 910 ++ D+M+PL ALK + W +T ED Sbjct: 875 DIDTDDMTPLEALKR---ITEWKQLWGTTRED 903 >gi|317968485|ref|ZP_07969875.1| DNA mismatch repair protein MutS [Synechococcus sp. CB0205] Length = 918 Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 290/829 (34%), Positives = 456/829 (55%), Gaps = 29/829 (3%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TPM+R Y+E+K+ +P+ ++ YR+GDF+E FF+DA+ SR L +TLT + GK +G+ +PM Sbjct: 101 TPMLRHYVELKAEHPERVLLYRLGDFFECFFEDAIALSRLLELTLTGKEGGKAIGR-VPM 159 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNK-SLVRRNVVRLVTPGTLTED 142 G+P H A Y L+ G +A+C+Q+E E K G K +L++R + R++TPGT+ E+ Sbjct: 160 AGIPHHAAERYCADLVGRGFSVALCDQVEEAAERSKNGGKPALLKREITRVLTPGTVLEE 219 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSE 201 +L+ +N+L AV + W +A D+STG F+++ D L +++++D E+++ Sbjct: 220 GMLTARRNNWLCAVVSEQQRWGLAIADVSTGEFRVTEREGSDHLHQELLQVDAAEVLWPA 279 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ-VEKTAA 260 E +L +++ F + S++ + + + + +VD G Q + AA Sbjct: 280 PEDGSERPAWCPASLQLTPLSR--TPFALNESKAIVLERFALASVDGLGLGEQPLAMRAA 337 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK-TID 319 + Y+ TQ + + P L +D+A R NLE+ +T G Q L +D Sbjct: 338 GGLLRYLSDTQPGCEIPLELPTTWTAGDQLVLDAATRRNLELTKTQLGGGLQGSLLWALD 397 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFI---QNPILINPIQKILKSSPDVPR 376 ++T GGR I +PL D I +R ++I + Q L ++++L+ D+ R Sbjct: 398 RTMTAMGGRCLRRWIEAPLVDLELICSRQEAIGELVSGSQARSLRLGVRRLLRPMGDLER 457 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 R G +D+ + DG+ + L L L +L ++L L Sbjct: 458 LAGRAGAGTASARDLVALADGLER-LPALAGLLSEVTSAPLVALARPWSEL-EALAAELR 515 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 L D P +GG + DG D LD R+ D +A + ++ I LK++++ Sbjct: 516 HQLLDTPPLTLTEGGLIHDGVDRQLDGLRNQLDDQDAWLAEQEQSERLKSGISTLKLQYH 575 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GYF+ V+ S A KD+ D +I RQT++N RF T EL + E RI A Sbjct: 576 RTFGYFLSVSKSKA----KDV--PDHWIRRQTLANEERFVTPELKNREGRIFQLKARAAQ 629 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP-IIDNSTNFIVK 615 E E F L + EQ+ + A++++A +D +LA +A YC+P ++ +S ++ Sbjct: 630 REYELFCQLRQRVGEQAGPIRFAARLVAELDALASLAEVAATSRYCKPQLVPDSRCLEIQ 689 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ L ++ PF ND L D L +LTGPN GKS +LRQ L+ + Sbjct: 690 GGRHPVVEQLLVEE---PFTPNDVSLGEGCD-----LVVLTGPNASGKSCYLRQTGLLQL 741 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+GS++PA A +GI D++F+RVG+ D+LA+G+STFMVEM ETA+IL+ A++QS V+L Sbjct: 742 MAQIGSWIPADAARLGIADRIFTRVGAGDDLAAGQSTFMVEMAETANILHHASSQSLVLL 801 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGTAT DGLSIAWA EYL R + ATH+HEL +L++ NA + V D+ Sbjct: 802 DEIGRGTATFDGLSIAWAVAEYLSGDIGARSIFATHYHELNELAEQRSNVENAQVLVEDT 861 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYH 844 + FLH+V+ G A+ SYGI+ +LAG+P V+ RA +L E H Sbjct: 862 GSTLRFLHRVVSGGANRSYGIEAARLAGVPAPVVLRARQVLSRIEANSH 910 >gi|152976135|ref|YP_001375652.1| DNA mismatch repair protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189030697|sp|A7GR99|MUTS_BACCN RecName: Full=DNA mismatch repair protein mutS gi|152024887|gb|ABS22657.1| DNA mismatch repair protein MutS [Bacillus cytotoxicus NVH 391-98] Length = 895 Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 297/923 (32%), Positives = 503/923 (54%), Gaps = 88/923 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R + IPMCG Sbjct: 5 TPMIQQYLKVKADYKDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A +YI++LI+ G+++AICEQ+E P + K +VRR VV+L+TPGT+ E + + Sbjct: 65 VPYHAAQNYIEQLIEKGYKVAICEQVEDP-----KTAKGVVRREVVQLITPGTMMEGRTI 119 Query: 146 SPTDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEK 202 ++N+L A+ R +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 120 DEKENNFLAALTRFEDGSYALACNDLTTGQNTVTLLTGSVEDVLLEVYATGSKEIVV-DS 178 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 S E L ETL + + I E +T TA Sbjct: 179 TFSQDELNKLTETLKMTVSYEE----ETKIPEGLEPLVKKVTQTKLV--------TAVGR 226 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSLLKTI 318 +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + SLL + Sbjct: 227 LFNYVLRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGSLLWLL 283 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D + T GGR+ + + PL KI RL+ + F+ + L +++ LK D+ R Sbjct: 284 DKTKTAMGGRMLKQWMERPLIQKEKIEERLEMVETFVNDYFLREDLKEKLKEVYDLERLA 343 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 ++ G +D+ ++ ++ IL L N +L + ++L K L Sbjct: 344 GKVAYGSVNARDLLQLKRSLQQVPAILEAISLLDNSYAAKLIEGADPC----EALTKLLD 399 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + ++ P +DG ++DG + LDE R + K IA L+ + E T IK+LKI +N Sbjct: 400 RSIQENPPLSVKDGDIIKDGYNEKLDEYRYISKNGKTWIAELEKREREITGIKSLKIGYN 459 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+IEVT ++ S+L + R+ +QT++N RF T EL + E I A + Sbjct: 460 RIFGYYIEVTKANLSLL-----PEGRYERKQTLANAERFITDELKEKETLILEAEEKIVQ 514 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ N +KD Sbjct: 515 LEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEERFVKPVLTNKREIFIKD 574 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VEK L K ++ NDC + P + + ++L+TGPNM GKST++RQ AL+ IM Sbjct: 575 GRHPVVEKVL---DGKLYVPNDCMM--PENMD---VFLITGPNMSGKSTYMRQLALVTIM 626 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ +S ++ D Sbjct: 627 AQIGCFVPATEAILPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERSLILFD 686 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DG+++A A IE++H+ + L +TH+HELT L +SL N + + + Sbjct: 687 EIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLTHLKNVHVSAIEED 746 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--------KLYHHNQK 848 ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E K ++ Sbjct: 747 GKVVFLHKIQEGAADKSYGIHVAQLAELPDSLIARAKEVLAQLEGQEEITIPKRTEVKEQ 806 Query: 849 DMRLYYPEIQTK-------------------------ESKNNLSKNDKLFVE-------- 875 R+ P I+ + E++ + K +K ++ Sbjct: 807 PERMQQPVIEEQPVIKEVAEVQQESEEIVEESQLSFFETEERMEKQEKPVLDAKETAVLA 866 Query: 876 KIKCLNLDEMSPLTALKTLYAVK 898 +IK ++L +M+PL AL LY ++ Sbjct: 867 QIKKIDLLDMTPLEALNELYRLQ 889 >gi|318042948|ref|ZP_07974904.1| DNA mismatch repair protein MutS [Synechococcus sp. CB0101] Length = 923 Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 285/834 (34%), Positives = 456/834 (54%), Gaps = 38/834 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TPM+R Y+E+K+ +P+ ++ YR+GDF+E FF+DA+ SR L +TLT + GK +G+ +PM Sbjct: 105 TPMLRHYVELKAAHPERVLLYRLGDFFECFFEDAIQLSRLLELTLTGKEGGKAVGR-VPM 163 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G+P H A Y +L+ G +A+C+Q+E+ +L++R + R++TPGT+ E+ Sbjct: 164 AGIPHHAAERYCAELVSRGLSVALCDQVET-----TPAKGALLKREITRVLTPGTVLEEG 218 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSN-HDRLISDIMRIDPREIIFSEK 202 LLS +N+L AV ++ W +A D+STG F+++ + D+L +++++D E+++ Sbjct: 219 LLSARRNNWLCAVLCEQSRWGLAVADVSTGEFRVTERDGSDQLHQELLQVDAAEVLWP-- 276 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIA--DYYNITTVDTFG-SFSQVEKTA 259 E + L + P F S E+R+A + + + ++D G + A Sbjct: 277 --GDGEPAWCPDALRLTPL--PRTPF--SAEEARVALLERFRLASLDGLGLGEMPLGMRA 330 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT-LSGSREQSLLKTI 318 A + Y+ TQ + + P L +D+A R NLE+ RT L+G + SLL + Sbjct: 331 AGGLLRYLDDTQPGSAVPLELPTTWQAGDQLVLDAATRRNLELTRTQLNGGLQGSLLWAL 390 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D + T GGR I +PL D I +R D ++ + N L ++++L+ D+ R Sbjct: 391 DRTHTAMGGRCLRRWIEAPLVDRIAILSRQDGVSELVHNRRLRLGLRRLLRPMGDLERLA 450 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 R G +D+ + DG+ + + A+ + +L L Sbjct: 451 GRAGAGSASARDLVALADGLERLPQLASQISAAAATSPPLSALARSWPELDALAAELRHQ 510 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 L D P +GG + DG D LD R+ D + + + + I LK++++ Sbjct: 511 LLDTPPLSLTEGGLIHDGVDTQLDGLRNQLDDQEAWLTEQEAAERSASGINTLKLQYHRT 570 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GYF+ V+ + A + + +I RQT++N RF T EL E RI A E Sbjct: 571 FGYFLAVSRAKARSV------PEHWIRRQTLANEERFVTPELKAREGRILQLRARAAQRE 624 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN-----FI 613 + F L N + EQ+ + A+++++ +D +LA +A YC+P + + Sbjct: 625 YQLFCELRNRVGEQAGPIRAAARLVSELDAIASLAEVAATSGYCKPELTDPEGQEARVLQ 684 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDL-SCPNDKNSGK--LWLLTGPNMGGKSTFLRQN 670 ++ GRHP+VE+ L ++ PF N+ L S + +G L +LTGPN GKS +LRQ Sbjct: 685 IEAGRHPVVEQLLVEE---PFTPNNIQLGSATGSQATGHPDLIVLTGPNASGKSCYLRQT 741 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 L+ +MAQ+GS++PA A +GI D++F+RVG+ D+LA+G+STFMVEM ETA+IL+ AT + Sbjct: 742 GLLQLMAQIGSWIPAQSARLGITDRIFTRVGAGDDLAAGQSTFMVEMAETANILHHATER 801 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V+LDEIGRGTAT DGLSIAWA EYL + R + ATH+HEL +L+ L NA + Sbjct: 802 SLVLLDEIGRGTATFDGLSIAWAVAEYLADQIGARSVFATHYHELNELADQLPNVANAQV 861 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYH 844 V D+ E + FLH+V+ G A+ SYGI+ +LAG+P V+ RA +L E H Sbjct: 862 LVEDTGEELRFLHRVVNGGANRSYGIEAARLAGVPPAVVRRARQVLGRIEANSH 915 >gi|294505062|ref|YP_003569124.1| DNA mismatch repair protein MutS [Yersinia pestis Z176003] gi|262363122|gb|ACY59843.1| DNA mismatch repair protein MutS [Yersinia pestis D106004] gi|262367052|gb|ACY63609.1| DNA mismatch repair protein MutS [Yersinia pestis D182038] gi|294355521|gb|ADE65862.1| DNA mismatch repair protein MutS [Yersinia pestis Z176003] Length = 819 Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 300/861 (34%), Positives = 466/861 (54%), Gaps = 55/861 (6%) Query: 48 MGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAI 107 MGDFYELF+ DA AS+ L I+LTKRG G+ IPM GVP H+ +Y+ KL+++G AI Sbjct: 1 MGDFYELFYSDAKRASQLLDISLTKRGASAGEPIPMAGVPYHSIENYLAKLVQLGESAAI 60 Query: 108 CEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAW 167 CEQI P +K V R VVR+VTPGT++++ LL N L A+ + + A Sbjct: 61 CEQIGDPAT-----SKGPVERKVVRIVTPGTISDEALLQERQDNLLAAIWQDAKGFGYAT 115 Query: 168 IDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNV 226 +DIS+G F+++ ++ + + +++ R +P E+++ E + E SL E + +P Sbjct: 116 LDISSGRFRVAEPADLETMAAELQRTNPAELLYPE----NFEPMSLIEHRHGLR-RRPLW 170 Query: 227 FFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPERED 285 F+ ++ ++ + + FG + + AA + Y+K TQ + P I E Sbjct: 171 EFELDTAKQQLNLQFGTRDLIGFGVEQAHLALRAAGCLLQYVKDTQRTSLPHIRGLTMER 230 Query: 286 IQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKIN 345 Q + +D+A R NLE+ + LSG E +L +D S+T G R+ + P+ D + Sbjct: 231 QQDGIIMDAATRRNLELTQNLSGGSENTLAAILDCSVTPMGSRMLKRWLHMPIRDIRVLT 290 Query: 346 TRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINIL 405 R +I +Q+ + +Q L+ D+ R L+RL + P+D+A +R + I Sbjct: 291 DRQQAIGG-LQD--IAAELQTPLRQVGDLERILARLALRTARPRDLARMRHAFQQLPEIH 347 Query: 406 NLFLKNDLP--EELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDE 463 L D+P + L V + +L LE+ + + P RDGG + G +A LDE Sbjct: 348 RLLQPIDVPHVQNLLSQVGQFDELQDLLERAIV----ETPPVLVRDGGVIASGYNAELDE 403 Query: 464 TRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRF 523 R+L D + + L+++ E+ + LK+ N GY+I+V+ + ++ + Sbjct: 404 WRALADGATDYLDRLEIREREKLGLDTLKVGFNGVHGYYIQVSRGQSHLVPI------HY 457 Query: 524 IHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVI 583 + RQT+ N R+ EL + E+++ + AL IE +E + + ++ L ++ + Sbjct: 458 VRRQTLKNAERYIIPELKEYEDKVLTSKGKALAIEKGLYEEIFDLLLPHLPELQLSANAL 517 Query: 584 AIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSC 643 A +D+ LA A+ NY P + + + GRHP+VE+ LK+ PFI+N LS Sbjct: 518 AELDVLANLAERAETLNYSCPTLSDKPGIKIMGGRHPVVEQVLKE----PFISNPLTLSP 573 Query: 644 PNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSA 703 ++ ++TGPNMGGKST++RQ ALIV++A +GSYVPA A IG +D++F+RVG+A Sbjct: 574 QR-----RMLIITGPNMGGKSTYMRQTALIVLLAHLGSYVPADQATIGPIDRIFTRVGAA 628 Query: 704 DNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNR 763 D+LASGRSTFMVEM ETA+IL+ AT QS V++DEIGRGT+T DGLS+AWA E L + Sbjct: 629 DDLASGRSTFMVEMTETANILHNATEQSLVLMDEIGRGTSTYDGLSLAWACAENLASRIK 688 Query: 764 CRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAG 823 L ATH+ ELT L + ++ N L + E I F+H V G A SYG+ V LAG Sbjct: 689 AMTLFATHYFELTTLPEKMEGVVNVHLDALEHGETIAFMHSVQEGAASKSYGLAVAALAG 748 Query: 824 LPNTVISRAYDILKTFEKLYHH------NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKI 877 +P VI RA LK E L ++ + M L EI VE + Sbjct: 749 VPRDVIKRARQKLKELESLSNNAAASTIDGSQMTLLNEEIPPA-------------VEAL 795 Query: 878 KCLNLDEMSPLTALKTLYAVK 898 + L+ D +SP AL+ +Y +K Sbjct: 796 EALDPDSLSPRQALEWIYRLK 816 >gi|89100701|ref|ZP_01173557.1| DNA mismatch repair protein [Bacillus sp. NRRL B-14911] gi|89084576|gb|EAR63721.1| DNA mismatch repair protein [Bacillus sp. NRRL B-14911] Length = 883 Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 296/914 (32%), Positives = 496/914 (54%), Gaps = 76/914 (8%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPM++QY+ +K+ PD+ +F+R+GDFYE+FF+DA+ AS+ L ITLT + + + I Sbjct: 1 MAAYTPMIQQYLRVKADYPDAFLFFRLGDFYEMFFEDAIRASQELEITLTGKNGGVEEKI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A YI++L++ G+++AICEQ E P +AK +V+R VV+LVTPGTL E Sbjct: 61 PMCGVPYHSAQQYIEQLVERGYKVAICEQTEDPRQAK-----GVVKREVVQLVTPGTLME 115 Query: 142 DQLLSPTDSNYLMAVARIR-TEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIF 199 + L+ ++NY+ +++ + A D+STG KI+ + + +++++ +E++ Sbjct: 116 GRGLNEKENNYIASISAFSDGSFGFACNDLSTGENKITLLAGQEEVLNELSMSGAKEVVV 175 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISE--SRIADYYNITTVDTFGSFSQVEK 257 S E K ++ V+ Q + ISE + + D N + + Sbjct: 176 SSGFDPEMERKFRERSVAAVSYEQ-----EAGISEMSAPLLDALNQDKL----------R 220 Query: 258 TAAAAAISYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQ 312 AA ++Y+ +TQ + +P Y + + ID ++ NLE+ T+ S ++ Sbjct: 221 ETAARLLNYLFRTQKRSLDHLQPFATY----QVHQFMKIDYFSKRNLELTETIRSKGKKG 276 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 SLL +D + T G R+ + I PL D I R + + + +++ LK Sbjct: 277 SLLWLLDETKTAMGARMLKQWIDRPLIDKEAIGRRHSLVQSLLDDYFARQDLREKLKEVY 336 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE 432 D+ R R+ G +D+ ++ + + +L + E+ + EKL + + Sbjct: 337 DLERLAGRVAFGNVNARDLIQLKSSLLQ-VPLLKELVGGLQNEDAKALAEKLDAC-EEIT 394 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 L S + D+ P +DG +RDG LD+ R K IA L+ + E T IK+LK Sbjct: 395 DLLESAIVDNPPISVKDGNMIRDGYHDELDQYRDASRNGKTWIAQLEAQERERTGIKSLK 454 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 I +N GY+IEVT ++ +L++ R+ +QT++N R+ T EL + E I A Sbjct: 455 IGYNRVFGYYIEVTKANIHLLEEG-----RYDRKQTLANAERYITPELKEKETLILEAEE 509 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 +E E F + + + E L + ++ ++ +D+ A ++++++Y RP+ + Sbjct: 510 RITELEYELFCHVRDHVKEYIPRLQSLARTVSELDVLQCFAQISEDRHYVRPVFSGNREI 569 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 VK+GRHP+VEK + S+ ++ NDC + + +L L+TGPNM GKST++RQ AL Sbjct: 570 SVKEGRHPVVEKVM---DSQEYVPNDCVMG-----DGRELLLITGPNMSGKSTYMRQVAL 621 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 I+AQ+G YVPAS A + I D++F+R+G+AD+L SG+STFMVEM+E + + AT S Sbjct: 622 TSILAQIGCYVPASEAVLPIFDQVFTRIGAADDLISGQSTFMVEMLEAKNAIANATQNSL 681 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 ++ DEIGRGT+T DG+++A A IEY+H + L +TH+HELT L++ L N + Sbjct: 682 ILFDEIGRGTSTYDGMALAQAIIEYIHSRIGAKTLFSTHYHELTVLAEELPDLQNIHVSA 741 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK----------- 841 + N ++FLHK+ G AD SYGI V +LA LP+ +I RA +IL+ EK Sbjct: 742 IEQNGKVVFLHKIKEGAADKSYGIHVAQLAELPSELIDRANEILEKLEKKEGEPAEKPVR 801 Query: 842 -----------------LYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDE 884 D +L + + + K +LS +K ++K+ +++ E Sbjct: 802 EKVAAGMPELTAADPAPAPAPEVHDAQLSFFDGPAEPKKASLSPAEKKILDKLAKMDILE 861 Query: 885 MSPLTALKTLYAVK 898 M+PL A+ TLY ++ Sbjct: 862 MTPLDAMNTLYELQ 875 >gi|301099319|ref|XP_002898751.1| DNA mismatch repair protein mutS, putative [Phytophthora infestans T30-4] gi|262104824|gb|EEY62876.1| DNA mismatch repair protein mutS, putative [Phytophthora infestans T30-4] Length = 963 Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust. Identities = 296/873 (33%), Positives = 464/873 (53%), Gaps = 77/873 (8%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM+ QY+ K PD ++ +++GDFYE F DDA A+ L + LT++ MCG Sbjct: 55 TPMVAQYLARKKAYPDCMLLFQVGDFYEFFGDDARRAAHLLNLALTRKTTKTHVLNEMCG 114 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 PV + + +++KL+ AIC Q+ES AKKRG SLV R VVR+VTPG+L ED +L Sbjct: 115 FPVGSVDSFVEKLV------AICNQVESASAAKKRGYNSLVDRQVVRIVTPGSLVEDTML 168 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 +P ++NYL ++ +W +AW D+STG F +TS +++L S I+R P+EI+ L Sbjct: 169 TPKENNYLASLFYDDDKWGLAWADLSTGEFVSTTSTNEKLASAILRCSPKEIL-----LP 223 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTV----------DTFGSFSQV 255 +E +++ + AVA F D + ++ + + ++ D F + Sbjct: 224 SSEEEAMKVAMPRDAVA----FLDTVLPDTCMRTFRPASSFIPQASRRSLRDVFKTLDTS 279 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 E+ AA+A + Y+ T I P + + IDS+A LE+ ++LSGS+ SLL Sbjct: 280 EQAAASAILDYVDFTHGGMSALIRAPLHVESSDHMIIDSSAWRGLELAKSLSGSKASSLL 339 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 + ID + + G RL A +ASPL + ++ RLD++++F L+ ++ L D+ Sbjct: 340 QAIDSTTSPGGSRLLAAHLASPLMNLERLERRLDAVSYFYGQEQLLQRTRRQLSEVFDLE 399 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKND-----------------LPEELR 418 R+L RL IG G PKD+ + I + L ++ LP LR Sbjct: 400 RNLQRLSIGVGTPKDLKNVASTIEEAKQLEKLVKTHERLRIRRLPDLPGKETFGLPALLR 459 Query: 419 GAVEKLKKLPQS------LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSL--RDQ 470 L Q + + + L +D + GF+R G + LD+ + + D Sbjct: 460 DCCNGLVANEQQQGNIAQAAQEIHAALKEDYASLNSKSGFVRAGYSSELDKWQEILRHDP 519 Query: 471 SKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVL------KKDLESKDRFI 524 LQ KY L++ GYF+++ + L +++LE F Sbjct: 520 KSPEKQELQTKYRTLLGSSRLRVIFQAEKGYFLDLPHDENAKLLQIEHSRRELEKLTLF- 578 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 Q++ N R+ + EL + +T A +E F L + ++ + L + I+ Sbjct: 579 --QSLKNSVRYRSEELRQMNRELTEAAVEVERVENTIFSYLRDKVLSVRDELQAMASAIS 636 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKT-LKQQSSK---PFIANDCD 640 ID+ + +A ++N+ RP++D + ++DGRH +VE L+ +SK F+ N Sbjct: 637 QIDVVCSHTQVALDRNFTRPLLDGTCELHIEDGRHAVVEAAHLRGSNSKGMRAFVPNSLH 696 Query: 641 LSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRV 700 L+ G WLLTGPNMGGKSTFLRQNA +V++AQMG +VPA +A +G+VDKLF RV Sbjct: 697 LAA---APGGSCWLLTGPNMGGKSTFLRQNAHLVLLAQMGCFVPAKFARVGLVDKLFCRV 753 Query: 701 GSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHE 760 GSAD+LA+ +STFMVEM ET++IL QAT++S V++DE+GRGTA DG++IA A +E L Sbjct: 754 GSADDLAADKSTFMVEMQETSTILTQATSRSLVLMDEVGRGTAVNDGVAIAGAVLEALC- 812 Query: 761 TNRCRGLLATHFHELTDL-----SKSLKRFHNATL--QVSDSNEGIIFLHKVIPGIADHS 813 + R L ATHF L+ L + L+ + L QV+ + ++F H+V+ G+A S Sbjct: 813 AKQTRTLFATHFTALSALVGGTCNGQLRPYRMEVLERQVAGETKHLVFSHRVVEGLAAQS 872 Query: 814 YGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN 846 YG+ LAG P +V++RA ++L +L H N Sbjct: 873 YGVNTAALAGCPPSVVARASELLA---ELMHEN 902 >gi|307710199|ref|ZP_07646643.1| DNA mismatch repair protein MutS [Streptococcus mitis SK564] gi|307619179|gb|EFN98311.1| DNA mismatch repair protein MutS [Streptococcus mitis SK564] Length = 844 Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust. Identities = 297/883 (33%), Positives = 480/883 (54%), Gaps = 58/883 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEISLTSRNKNADNPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI+ G+++AI EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPYHSAQQYIDVLIEQGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSSK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEKEL 204 + +N+L+A+ R ++ +A++D+ TG F ++ L+ +I + RE++ +L Sbjct: 121 PDSQNNFLVAIDREGNQFGLAYMDLVTGDFYVTGLLDFTLVCGEIRNLKAREVVLG-YDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E + L + V + F D + +SR+A VEK A++ + Sbjct: 180 SEEEEQILSCQMNLVLSYEKEGFEDLHLLDSRLAS---------------VEKAASSKLL 224 Query: 265 SYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 Y+ +TQM KP I Y +I+ L +D A +++L+++ SG ++ SL +D Sbjct: 225 QYVHRTQMRELNHLKPVIRY----EIKDFLQMDYATKASLDLVENARSGKKQGSLFWLLD 280 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL I PL D +I R + + F+ + + + LK D+ R S Sbjct: 281 ETKTAMGMRLLRSWIHRPLIDKERIVQRQEVVQVFLDHFFERSDLTDSLKGVYDIERLAS 340 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G+ PKD+ + + S + + L+ L +E+L ++P+ LE +S+ + Sbjct: 341 RVSFGKTNPKDLLQLATTL-SSVPRIRAILEGMEQSALSYLIEQLDRIPE-LESLISAAI 398 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + + P DGG +R G D +LD+ R + + IA ++ K E + I LKI +N Sbjct: 399 APEAPHVITDGGIIRTGFDETLDKYRRVLREGTSWIAEIEAKERENSGISTLKIDYNKKD 458 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+ VT+S + F + T+ N RF T EL +E + A + +E Sbjct: 459 GYYFHVTNSQLGNVPA------HFFRKATLKNSERFGTEELARIEGDMLEAREKSANLEY 512 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F + + + + L +Q IA +D+ +LAI+A+ Q+ RP + + ++ GRH Sbjct: 513 EIFMRIREEVSKYIQRLQALAQGIATVDVLQSLAIVAETQHLIRPEFGDDSQIDIQKGRH 572 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 +VEK + Q+ +I N ++ + L+TGPNM GKST++RQ A+ IMAQM Sbjct: 573 AVVEKVMGAQT---YIPNTIQMA-----EDTSIQLITGPNMSGKSTYMRQLAMTAIMAQM 624 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPA A + I D +F+R+G+AD+L SG+STFMVEM+E + ++ AT S ++ DE+G Sbjct: 625 GSYVPAESARLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELG 684 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A + IEY+HE + L ATH+HELT L+ SL+ N + + + + Sbjct: 685 RGTATYDGMALAQSIIEYIHEHIGAKTLFATHYHELTSLASSLEHLVNVHVATLEQDGQV 744 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 FLHK+ PG AD SYGI V K+AGLP +++RA IL E + MR QT Sbjct: 745 TFLHKIEPGPADKSYGIHVAKIAGLPADLLARADKILTQLESQGTESPAPMR------QT 798 Query: 860 KESKNNLSKNDKL----FVEKIKCLNLDEMSPLTALKTLYAVK 898 +S D + ++ L++ M+P+ A+ L +K Sbjct: 799 SAVTEQISLFDTTEEHPILAELSKLDVYNMTPMQAMNVLVELK 841 >gi|194476954|ref|YP_002049133.1| DNA mismatch repair protein [Paulinella chromatophora] gi|171191961|gb|ACB42923.1| DNA mismatch repair protein [Paulinella chromatophora] Length = 846 Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust. Identities = 289/834 (34%), Positives = 469/834 (56%), Gaps = 55/834 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TP ++ Y+E+K I+PD ++ YR+GDF+E FF+DA+ +R L ITLT + GK +G+ +PM Sbjct: 42 TPTLKHYVELKDIHPDKILLYRLGDFFECFFEDAITVARLLEITLTGKEGGKGIGR-VPM 100 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H+ Y L++ G +A+C+Q+E+ +G +L+RR + R++TPGT+ E+ Sbjct: 101 AGVPHHSVIRYCMDLVRHGLSVALCDQVET---TPSKG--ALLRREITRILTPGTIIEEG 155 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTS-NHDRLISDIMRIDPREIIFSEK 202 LS +N+L+A+ EW +A D+STG F+++ D+L ++ +++ E+++S Sbjct: 156 ALSSRQNNWLVAIVIEGEEWGLAIADVSTGEFRVTERIGIDQLSQELGKLEAAEVLWSGT 215 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAAA 261 E+ L+ P F+ + + + + + ++D G + ++ AA Sbjct: 216 EIPRWCPDDLYV---KYLTRTP---FEIPQATASLLTTFQLASLDGLGLTNLKLATRAAG 269 Query: 262 AAISYIKKTQ-----------MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGS 309 I+Y+ TQ +++ P + + + L +D+ R NLE+ RT +G Sbjct: 270 GLINYLNATQPMPEVATAARLLLDPPNVYFNGDQ-----LILDTQTRRNLELTRTQRNGL 324 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 + S L ID ++T GGR I +PL + + I R +I F+ + ++K+LK Sbjct: 325 FQGSFLWAIDQTLTAMGGRCLRHWIEAPLMELSLIEERQQAIGEFVAQRPIRTALRKLLK 384 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN---DLPEELRGAVEKLKK 426 S D+ R R G +D+ + +++ + + LK+ L LR + +L Sbjct: 385 SINDLERLAGRASAGSASARDLVNLASSLKN-LPTIGFILKDCTASLFLTLRKSNPELAN 443 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 L + +T+ P+ +GG +++ D LD R+ ++ ++ + + + Sbjct: 444 LATLIHETIIEYP----PSTLTEGGLIKEKVDVVLDALRNQLNEQNAWLSEQEQIERKNS 499 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 NL+++ + N GY++ VT S A+ + K +I RQT++N RF T EL E + Sbjct: 500 GNSNLRLQRHRNFGYYLAVTRSKANSVPK------HWIRRQTLANEERFVTPELKAREGK 553 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 I N E E F+ L + +Q + + A++ +AIID+ LA +A + YC P + Sbjct: 554 IFQIKNLIDQREYEVFDNLRKRVGQQGQPIRAAARQVAIIDVIAGLAEIAANRGYCCPKL 613 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 + GRHP+VE+ L ++ FI+ND L ND L +LTGPN GKS + Sbjct: 614 VKGRLLSIDSGRHPVVEELLVEER---FISNDVHLGDGND-----LIILTGPNASGKSCY 665 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 LRQ L+ +MAQMGS++PA A I I D++F+RVG+ D+LA+G+STFMVEM ETA+ILN Sbjct: 666 LRQIGLLQLMAQMGSWIPAQAACISITDRIFTRVGAVDDLAAGQSTFMVEMNETANILNH 725 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT+QS ++LDEIGRGTAT DGLSIAWA E++ + R R + ATH+HEL +L+ S+ + Sbjct: 726 ATDQSLILLDEIGRGTATFDGLSIAWAVAEHIAKHIRARSIFATHYHELNELANSINNVN 785 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 N + V ++ E +IFLHKV G A SYGI+V +LAG+P V+SRA +ILKT E Sbjct: 786 NFQVLVQETGEELIFLHKVTAGGASRSYGIEVARLAGVPARVVSRAREILKTVE 839 >gi|322390457|ref|ZP_08063977.1| DNA mismatch repair protein HexA [Streptococcus parasanguinis ATCC 903] gi|321142856|gb|EFX38314.1| DNA mismatch repair protein HexA [Streptococcus parasanguinis ATCC 903] Length = 849 Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust. Identities = 298/884 (33%), Positives = 475/884 (53%), Gaps = 55/884 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYPDAFLLFRMGDFYELFYEDAVNAAQILEISLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI+ G+++AI EQ+E P EAK +V+R VV+++TPGT+ D Sbjct: 67 VPYHSAQQYIDVLIEQGYKVAIAEQMEDPKEAK-----GVVKREVVQVITPGTVV-DSTK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEKEL 204 +++N+L+A+ R ++ +A++D+ TG F+++T N ++ +I + RE++ Sbjct: 121 PDSENNFLVALDRSGNDYGLAYMDLVTGEFQVTTLNDFSMVCGEIRNLRAREVVLG---- 176 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS-FSQVEKTAAAAA 263 +L E V V+Q N+ H + + V G S++EK A Sbjct: 177 -----YALPEQEERVFVSQMNLLLSHVET--------ALDNVQLLGDHLSELEKKTAGKL 223 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT-LSGSREQSLLKTIDYSI 322 + Y+ +TQM + +I L +D A +++L++ +G + SL +D + Sbjct: 224 LQYVHQTQMRELSHLKKAHHYEICDFLQMDFATKASLDLTENGRTGKKHGSLYWYLDETK 283 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGRL I PL D +I R D I F+ + + + LK D+ R SR+ Sbjct: 284 TAMGGRLLRSWIQKPLVDLKRIRERQDIIQVFMDHFFERSDLTDSLKGVYDIERLASRVS 343 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 G+ PKD+ + D + I ++ L P L + +L +LP+ L + ++S ++ + Sbjct: 344 FGKINPKDLLQLGDTLGHVPTIKSILLGIGDPV-LDVLIARLDELPE-LHRLITSAIAPE 401 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 +G +R G D LD+ R + IA ++ K E + I LKI +N GY+ Sbjct: 402 ASAVITEGNIIRTGFDEQLDQYRVVLRDGTGWIAEIEAKEREASGITGLKIDYNKKDGYY 461 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 VT+S S + F + T+ N RF T EL +E + A + +E F Sbjct: 462 FHVTNSQLSHVPA------HFFRKATLKNSERFGTEELARIEGDMLEAREKSANLEYTIF 515 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 + + + + L +Q IA +D+ +LA +A+ Q RP+ + GRHP+V Sbjct: 516 MRIREEVGKYIQRLQQLAQAIATVDVLQSLASVAESQRLNRPLFHEERRIAIDKGRHPVV 575 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 EK + QS +I N + D + L+TGPNM GKST++RQ A+IVI+AQ+GSY Sbjct: 576 EKVMGAQS---YIPNSIFMDEERD-----IQLITGPNMSGKSTYMRQLAIIVILAQIGSY 627 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA A + I D +++R+G+AD+L SG+STFMVEM+E + +AT QS ++ DE+GRGT Sbjct: 628 VPAQKAELPIFDAIYTRIGAADDLVSGQSTFMVEMMEANHAIRKATTQSLILFDELGRGT 687 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFL 802 AT DG+++A + IEY+H+ + L ATH+HELT LS++L R N + + + + FL Sbjct: 688 ATYDGMALAQSIIEYIHDRTGAKTLFATHYHELTALSETLSRLENVHVATLERDGQVTFL 747 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKES 862 HK+ PG AD SYGI V K+AGLP ++ RA IL E Q + P+ KE Sbjct: 748 HKIEPGPADKSYGIHVAKIAGLPEELLKRADAILTKLEG--QAQQVPLADATPK---KEV 802 Query: 863 KNNLSKNDKLFVE--------KIKCLNLDEMSPLTALKTLYAVK 898 + + + LF E ++K L+L M+P+ + + +K Sbjct: 803 PSQVVEQMSLFEEEPEHTAITELKNLDLYNMTPMEVMMAVAELK 846 >gi|325913769|ref|ZP_08176130.1| DNA mismatch repair protein MutS [Lactobacillus iners UPII 60-B] gi|325476969|gb|EGC80120.1| DNA mismatch repair protein MutS [Lactobacillus iners UPII 60-B] Length = 854 Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust. Identities = 283/872 (32%), Positives = 477/872 (54%), Gaps = 41/872 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY +IK PD+ +FYR+GDFYELF DDA+ ++ L +TLT R K IPM G Sbjct: 6 TPMMEQYYKIKQQYPDAFLFYRVGDFYELFEDDAVKGAKLLELTLTHRSNKSAKPIPMAG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP + YI L+ G+++AICEQ+E P +A+ +V+R +++LVTPGT+ D Sbjct: 66 VPHLAVDSYINTLVDKGYKVAICEQLEDPKKAQ-----GMVKRGIIQLVTPGTVINDNPD 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 +SNYL ++ W + + D+STG + ++ + ++++++ + RE+++ E Sbjct: 121 QAKESNYLTSLCSSSQGWGLTYCDLSTGESYATHLTSWEMIVNELLSLQTRELVYGETLT 180 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S + +F + ++QP +++ + + T +Q+E A + Sbjct: 181 SDEQ---IFLKKAGITLSQP----------VKLSGEHAEVSYVTQQLHNQLEIAATKQLL 227 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILR-TLSGSREQSLLKTIDYSIT 323 +Y+ TQ + + + + L + ++NLE+++ T +G + SL +D + T Sbjct: 228 AYLLATQKRSLAHLQVTQSYEPNQYLQMSHIVQTNLELIKSTKTGKKMGSLFWLLDKTST 287 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 GGRL I PL ++I +R + + I K L+ D+ R R+ + Sbjct: 288 AMGGRLLKSWIERPLISLSEIKSRQLVVTALFDDYFSREKIIKQLQGVYDLERLTGRVAL 347 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFL--KNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 G +++ + D + I+N+ KN++ ++ LK + + KT+ + Sbjct: 348 GSANARELLQLADSLAVVPEIINILANSKNEVLNNFAQKIDPLKGIHDLIVKTIV----E 403 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + P ++GG ++ G + LD R K+ +A + E+T I NL++ +N GY Sbjct: 404 NPPLSTKEGGIIKSGVSSQLDRYRDAMINGKKWLADMANSEREKTGINNLRVGYNKVFGY 463 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IEVT+S K+ DR++ +QT++N R+ T+EL + E I A + + +E E Sbjct: 464 YIEVTNSY-----KNKVPLDRYMRKQTLTNAERYITVELKEHEALILEAQDYSTDLEYEL 518 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY-CRPIIDNSTNFIVKDGRHP 620 F L I + +L ++ ++ +D+ ++L+++ NY C +S+ + +GRHP Sbjct: 519 FTNLREDIKKYIPALQKLAKQLSSLDVLATFSLLSEQNNYVCPQFSQDSSAINIVNGRHP 578 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + S + +I ND + ++L+TGPNM GKST++RQ ALI+IMAQ+G Sbjct: 579 VVEKVM---SDEEYIPNDVKMD-----EQTNIFLITGPNMSGKSTYMRQLALIIIMAQIG 630 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 ++PA A + I DK+F+R+G+ D+L SG+STFMVEM E LN AT +S ++ DEIGR Sbjct: 631 CFIPADSAVLPIFDKIFTRIGAGDDLISGKSTFMVEMSEANIALNNATKRSLILFDEIGR 690 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A I+YLH+ + L ATH+HELTDL + L N + + N +I Sbjct: 691 GTATYDGMALAGAIIKYLHDKVGAKTLFATHYHELTDLDQELAHLKNIHVGATQENGHLI 750 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 FLHK++PG AD SYGI V +LAGLP V+ A +LK EK + NQ ++ Sbjct: 751 FLHKILPGAADQSYGIHVAQLAGLPTKVLREATHMLKQLEK-HSDNQAAFSDEQLDLFGS 809 Query: 861 ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALK 892 ++ +S ++ + +IK L L+E++PL ++ Sbjct: 810 SDQHKMSDEEQDVLTQIKNLYLNEITPLQVMQ 841 >gi|257866605|ref|ZP_05646258.1| DNA mismatch repair protein mutS [Enterococcus casseliflavus EC30] gi|257872879|ref|ZP_05652532.1| DNA mismatch repair protein mutS [Enterococcus casseliflavus EC10] gi|257800563|gb|EEV29591.1| DNA mismatch repair protein mutS [Enterococcus casseliflavus EC30] gi|257807043|gb|EEV35865.1| DNA mismatch repair protein mutS [Enterococcus casseliflavus EC10] Length = 853 Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust. Identities = 287/877 (32%), Positives = 480/877 (54%), Gaps = 39/877 (4%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM QY+ IK+ D+ +FYR+GDFYELF +DA+ A++ L +TLT R K+ + IPMC Sbjct: 10 NTPMMEQYLSIKAQYQDAFLFYRLGDFYELFNEDAVKAAQILELTLTSRNKNAEEPIPMC 69 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H A++YI LI+ G+++AICEQ+E P + K +V+R VV+L+TPGT+ + + Sbjct: 70 GVPYHAASNYIDTLIEQGYKVAICEQVEDP-----KTTKGMVKREVVQLITPGTVMDSKG 124 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 LS ++N+L AV + + A++D+STG K + + + ++++ + +E++ + Sbjct: 125 LSAKENNFLTAVLQQGERFGFAYVDLSTGELKAAQLEDEEAVVNEAAALQTKEVVLCSE- 183 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ-VEKTAAAA 262 + E+L + NV F + A++ +T SQ +EK Sbjct: 184 --------IPESLQTTLTNRLNVVFSKQETLEENAEFQFLTE-----PLSQELEKVVTGK 230 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYS 321 +SY+ TQ + I L +D ++ NLE+ +++ +G ++ +LL +D + Sbjct: 231 LLSYLAITQKRSLAHIQQAVEYQPDHALKMDHYSKFNLELTQSIRTGKKQGTLLWLLDET 290 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T GGRL + + PL KI R + + + + +Q+ L D+ R + R+ Sbjct: 291 KTAMGGRLLKQWLDRPLIQPKKITARQEMVQSLLDSFFERADLQEALTKVYDMERLVGRV 350 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 G +D+ ++ + + ++ L+ E + +L L L + + + + Sbjct: 351 AFGNVNGRDLLQLKSSLEQ-VPLIAQLLQGINRGEWNDLLLELTPL-DDLVALIEASIDE 408 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 D P +G ++DG LDE R+ K+ +A L+ + T +KNLK+ N GY Sbjct: 409 DAPLQITEGNIIKDGFHQQLDEYRTAMRNGKQWLAELEANERQATGVKNLKVGFNRVFGY 468 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IE+T A++L D R+ +QT++N RF + EL LE I A ++ +E Sbjct: 469 YIEITK--ANLLNLD---TSRYERKQTLANAERFISPELKKLETLILEAEEKSVDLEYRL 523 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 F + + + L ++ ++ +D+ + A +++ Y RP + + DGRHP+ Sbjct: 524 FLDVREEVKKSITRLQKLAKAVSAVDVLQSFATVSERYQYVRPTVAKKRAVSIIDGRHPV 583 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VEK L Q +I N S D+ + ++ L+TGPNM GKST++RQ AL+VIMAQ+G Sbjct: 584 VEKVLGHQE---YIPN----SIVMDEET-EILLITGPNMSGKSTYMRQFALLVIMAQIGC 635 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA A + I D++F+R+G++D+L +G+STFMVEM+E L AT ++ DE+GRG Sbjct: 636 FVPAQSAEMPIFDRIFTRIGASDDLIAGQSTFMVEMMEANQALRHATPNGLILFDELGRG 695 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 TAT DG+++A A IEY+H+ + L +TH+HELT L + L N + + ++F Sbjct: 696 TATYDGMALAQAIIEYIHKEVHAKTLFSTHYHELTVLDEELAHLRNVHVGAVEKEGEVVF 755 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKE 861 LHK++ G AD SYGI V K+AGLP+ ++ RA ILK E+ H + E Q Sbjct: 756 LHKMMEGPADKSYGIHVAKIAGLPSALLQRAATILKALEE--HEPTVQPKPVVEESQQLS 813 Query: 862 SKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + +S + ++++K LNL EM+P+ AL TLY ++ Sbjct: 814 LFSEVSTEEIGVIDQLKKLNLLEMTPMDALNTLYELQ 850 >gi|194364944|ref|YP_002027554.1| DNA mismatch repair protein MutS [Stenotrophomonas maltophilia R551-3] gi|194347748|gb|ACF50871.1| DNA mismatch repair protein MutS [Stenotrophomonas maltophilia R551-3] Length = 863 Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust. Identities = 296/891 (33%), Positives = 471/891 (52%), Gaps = 42/891 (4%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 +E TP+M+Q+ KS PD L+F+RMGDFYELF+DDA A+R L ITLT+RG G Sbjct: 3 KEKSAEHTPLMKQFFAAKSEYPDLLLFFRMGDFYELFYDDARKAARLLDITLTQRGSSGG 62 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 IPM GVPVH Y+ +L+ +G +AICEQI P AK LV R VVR+VTPGT Sbjct: 63 APIPMAGVPVHAYEGYLARLVALGESVAICEQIGDPALAK-----GLVERKVVRIVTPGT 117 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 +T++ LL LM ++R + + +AW D++ G F ++ D L +++ R++P E+ Sbjct: 118 VTDEALLDERRDTLLMTLSRSKQGYGLAWADLAGGRFLVNEVDTDDALEAELARLEPAEL 177 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 + ++E + V P FD ++ +++ + + FG + Sbjct: 178 LVPDEE----NWPEFLRQRSGVRRRAP-WLFDADSGRRQLLNFFKLHDLSGFGIDDKPRA 232 Query: 258 TAAAAAIS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 TAAA A+ Y+++TQ P + E + +++A R +LE+ + G +LL Sbjct: 233 TAAAGALLGYVEETQKQRLPHLTSISMETAGEAIAMNAATRRHLELDTRVDGDTRNTLLG 292 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D ++T GGRL + PL + R ++ I + I++ + D+ R Sbjct: 293 VLDSTVTPMGGRLLRRWLHRPLRLREVLVQRHHAVETLIDRGSDAD-IREQFRRLGDLER 351 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKT 434 L+R+ + P+D + +RDG+ + + D P + L A+ + + L Sbjct: 352 ILTRVALRSARPRDFSTLRDGLGLLPAVREVLAPLDSPRLQTLHAALGEHDECAHLLASA 411 Query: 435 LSSMLSDDLPTFK-RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 ++ M P K DGG L DG DA LDE R L + + + L+ + E + I LK+ Sbjct: 412 IAEM-----PPLKLSDGGVLADGFDAELDELRRLSTHADQFLVDLEQRERESSGIATLKV 466 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GY+IE++ + + + RQT++N R+ T EL E+++ +A + Sbjct: 467 GYNRVHGYYIEISKGQSE------RAPVHYTRRQTLTNAERYITEELKAFEDKVLSARDR 520 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 +L E +E L + + Q E L + ++ +D+ A A A+ ++ RP + Sbjct: 521 SLSREKYLYEQLLDTLGTQLEPLKQCAAALSELDVLAAFAERAQALDWARPELQAEPCLK 580 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 ++ GRHP+VE Q PF ND DL P+ + + ++TGPNMGGKST++RQNALI Sbjct: 581 IERGRHPVVEAVRDQ----PFEPNDLDLH-PDRR----MLVITGPNMGGKSTYMRQNALI 631 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 V++A +GS+VPAS A IG +D++ +R+G+ D+LA G+STFMVEM ET+ IL+ AT S V Sbjct: 632 VLLAHIGSFVPASRALIGPIDRILTRIGAGDDLARGQSTFMVEMAETSYILHHATAHSLV 691 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR-----FHNA 788 ++DEIGRGT+T DGL++A A +L NRC L ATH+ ELT L+ N Sbjct: 692 LMDEIGRGTSTYDGLALADAVARHLAYENRCYTLFATHYFELTALADEQHEGGRSGIANV 751 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 L + E ++F+H V G A+ S+G+QV LAGLP +++A L E+ + Sbjct: 752 HLDAVEHGEALVFMHAVKDGPANRSFGLQVAALAGLPRATVAQARRRLAELEQRGGESHA 811 Query: 849 DMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 L + + + + + ++ DE++P AL+ LY +KA Sbjct: 812 -AELAPQALDAPQQFGLFAAPSSKAQDALAAIDPDELTPKQALEALYRLKA 861 >gi|282850161|ref|ZP_06259540.1| DNA mismatch repair protein MutS [Veillonella parvula ATCC 17745] gi|282579654|gb|EFB85058.1| DNA mismatch repair protein MutS [Veillonella parvula ATCC 17745] Length = 877 Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust. Identities = 287/830 (34%), Positives = 465/830 (56%), Gaps = 35/830 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TPMM QY++IKS + L+F+R+GDFYELF +DAL+ASR L ITLT R + P Sbjct: 3 KKQTPMMEQYLDIKSRYSEELLFFRLGDFYELFNEDALVASRELNITLTGRPTGDEERTP 62 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP H A YI+ L+K G+++AICEQ+E P + K +V+R+V+++VTPGT+ + Sbjct: 63 MCGVPFHAAESYIETLVKKGYKVAICEQLEDP-----KAVKGIVKRDVIKVVTPGTVMTE 117 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTG--IFKISTSNHDR--LISDIMRIDPREII 198 +N+L ++ W + + D+STG I+ T R + + P EII Sbjct: 118 NGNDARSNNFLSLFYMVKDTWILVFSDVSTGEVIWHRITDCEKRSDMYDALSMYRPTEII 177 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK- 257 E + + + E + V P F ++ +A+ V FG +E+ Sbjct: 178 LPEGTILPQDIRDFIENQFSNVVFSP---FSTYYTQREVAE----KAVTHFGDLGLMEED 230 Query: 258 --TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSL 314 A + Y++ I Y + + + L +D+++ +LEI L G ++ +L Sbjct: 231 VWEALGYMLLYLEDIIKSEISHINYVHQLSVGNRLILDTSSLRHLEITHNLRDGGQKGTL 290 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D ++T G RL + + SPLTD +I R +++ I + I+ L D Sbjct: 291 LDVLDRTLTPMGARLLKQWLESPLTDINQIQRRQAAVSELITRGAERSHIRNFLDCIYDF 350 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R + R++ G P+D+ +R+ + +I N+ L L E+++ + + Sbjct: 351 ERIVGRVETGSVSPRDLTALRESLAVLPDIKNV-LGTCSSLALTSINERMQD-HKDIYDL 408 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L +++ +DG ++DG +A LDE RSL S++ +A ++ E T + +K Sbjct: 409 LCRAIAEQPALTLKDGRVIKDGFNADLDELRSLATNSEQWLAKMEADIKEATGLSKIKTG 468 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+ EV+ S K + D FI +QT++N R+ T EL + E +I +A + Sbjct: 469 YNKVFGYYFEVSHS------KSEQVPDYFIRKQTLANAERYITPELKEFEIKILSAKDKI 522 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E E ++ L N I + + ++ +A +D+ +LA++ E+NY P I + + Sbjct: 523 IALEHELYQQLRNDIKLVIKDVQETARALADLDVLCSLALVGYEENYICPTIVMNGQINI 582 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 +DGRHP++EK LK++ F+ ND L+ +++ L+TGPNM GKST++RQ A+++ Sbjct: 583 RDGRHPVIEKFLKREV---FVPNDIVLNHDDEE----FLLITGPNMAGKSTYMRQAAILM 635 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMAQ+GS++PA A I VD++F+RVG++D++++G+STFMVEM E A IL AT+ S +I Sbjct: 636 IMAQIGSFIPAREASISPVDRIFTRVGASDDISTGQSTFMVEMKEVAYILENATHNSLII 695 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDEIGRGT+T DGLSIA A +E++ + + L ATH+HEL L +S + N T+ V + Sbjct: 696 LDEIGRGTSTFDGLSIAQAVVEHICKHIHSKTLFATHYHELICLEESYSKLKNYTVAVKE 755 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYH 844 + + FL ++I G AD SYGI V +L GLPN+V+ RA IL++ E H Sbjct: 756 KGKDVAFLRRIIKGGADRSYGIHVARLVGLPNSVLKRAEVILESLEDQSH 805 >gi|326335432|ref|ZP_08201619.1| DNA mismatch repair protein MutS [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692198|gb|EGD34150.1| DNA mismatch repair protein MutS [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 864 Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust. Identities = 302/890 (33%), Positives = 487/890 (54%), Gaps = 56/890 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M+QY +IK+ PD+L+ +R+GDFYE F +DA+ S+ LGI LT R G+ + G Sbjct: 8 TPLMKQYNQIKAKYPDALLLFRVGDFYETFKEDAIKTSQVLGIVLTNRNNG-GEQTELAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H+ N Y+ KL+K G R+AIC+Q+E P + K++V+R V LVTPG D +L Sbjct: 67 FPYHSLNSYLPKLVKAGFRVAICDQLEDP-----KLTKTIVKRGVTELVTPGVALNDDIL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 +N+L +V T I+++DISTG + ++ ++ + + P EI+ ++K+ Sbjct: 122 QANKNNFLASVWLDTTNNGISFLDISTGEYYLAEGDNAYIDKLLQNFQPNEILIAKKQ-- 179 Query: 206 HAEYKSLFETLGNVAVAQPNVF---FDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 E+++ F T + + V+ F + I + +N ++ F +A Sbjct: 180 RKEFETCFGTHFHCFGLEDWVYKEDFAYDI----LTKQFNTNSLKGFAIEDMHNGILSAG 235 Query: 263 AI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS--LLKTID 319 AI Y+ +TQ I +R +++D NLEI SG +S LL ID Sbjct: 236 AILHYLSETQHHQLQHIITIKRIMNGEYVWLDKFTIRNLEIY---SGQNTESVSLLDIID 292 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 +++ G R +A PLT ++I R + F++N + ++ LK D+ R LS Sbjct: 293 KTLSPMGSRTLKRWLALPLTSLSQIQNRHQVVATFVENNEIRQKVRDHLKKVNDIERLLS 352 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKND--LPEELRGAVEKLKKLPQSLEKTLSS 437 ++ G+ P+++ +++ + + + + L ++++ L + L+ L +E+TL+ Sbjct: 353 KIATGKITPREVIYLKNSLTAILPVKKLAMESNSSYLNSLGKQIHNLQDLCDRIEETLN- 411 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 ++ P G +R+ LDE R+L + + + + + T I +LKI +NN Sbjct: 412 ---EEAPVNILKGNVIRENFSTELDELRNLSVSGRTYLDQMLEREIKNTHISSLKIDNNN 468 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+ EV + + KD + D +I +QT+ N R+ T EL + E +IT+A ++ Sbjct: 469 VFGYYFEVRN-----VHKD-KVPDHWIRKQTLVNAERYITEELKEYEEKITHAQERITIL 522 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E E F L II + + +I ID + LA E +Y P +D S +K Sbjct: 523 EQEYFSKLITEIIRYISPIQQTASIIGEIDTLCGFSTLAIENHYICPKLDESFTINLKQA 582 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP++EK L ++P+IAND L D +S ++ ++TGPNM GKS LRQ ALIV+M Sbjct: 583 RHPVIEKQLP--PTQPYIANDIYL----DNDSQQIMMITGPNMSGKSALLRQVALIVLMT 636 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+GS+VPAS A IGIVDK+F+RVG++DN++ G STFMVEM E A ILN + +S ++LDE Sbjct: 637 QIGSFVPASEAQIGIVDKIFTRVGASDNISQGESTFMVEMNEAALILNNLSQRSLILLDE 696 Query: 738 IGRGTATLDGLSIAWATIEYLHE-TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 IGRGT+T DG+SIAWA EYLHE + L ATH+HEL ++ R N ++ V + Sbjct: 697 IGRGTSTYDGISIAWAIAEYLHEHPTHAKTLFATHYHELNEMQNEFSRIKNFSVSVKEVK 756 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYH--------HNQK 848 I+FL K++ G ++HS+GI V K+AG+P VI +A ++LK E + N++ Sbjct: 757 GSILFLRKLVEGGSEHSFGIHVAKMAGMPQYVIEKANNVLKKLENSHQLESNKEQLTNKE 816 Query: 849 DMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 M+L + ++ + L +N K ++I NLD ++P+ AL L +K Sbjct: 817 GMQLSFFQLD-----DPLLENIK---QQIMNTNLDNLTPIEALMKLSNIK 858 >gi|225025022|ref|ZP_03714214.1| hypothetical protein EIKCOROL_01911 [Eikenella corrodens ATCC 23834] gi|224942252|gb|EEG23461.1| hypothetical protein EIKCOROL_01911 [Eikenella corrodens ATCC 23834] Length = 855 Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust. Identities = 304/879 (34%), Positives = 464/879 (52%), Gaps = 48/879 (5%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY EIK+ + D L+FYRMGDFYELFF DA A+R L ITLT RG+ G+ I M GVP Sbjct: 1 MMQQYFEIKAQHTDKLLFYRMGDFYELFFTDAEEAARLLDITLTTRGQINGEPIKMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A Y+ KL+K+G +AICEQ+ + NK V R VVR++TPGTLT+ LL Sbjct: 61 HHAAEQYLAKLVKLGRSVAICEQV-----GEVGANKGPVAREVVRIITPGTLTDAALLED 115 Query: 148 TDSNYLMAVA---RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 ++N + AVA + + +AW + +G FK +L ++ R+ E++ ++ Sbjct: 116 KETNRIAAVAWNGKSKQPVGLAWASLQSGEFKAKIIAPAQLSDELARLQAAEVLLPDQA- 174 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKT--AAA 261 A L E + + F + + + DY+ + FG F + + AA Sbjct: 175 --AAKLRLPENCNPTRLH--DWQFAPDSAHTLLTDYFGCQDLLGFGLQFGEHDPAIGAAG 230 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 A ++YI+ TQ + E Q + +D+A R NLEI TLSG +E +L T+D Sbjct: 231 ALLNYIRHTQSRLPRHLDNLSLETEQQYIGMDAATRRNLEITATLSGKKEPTLFSTLDRC 290 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 G RL A+ + +PL + I R ++++ +QN + +Q LK+ D+ R +R+ Sbjct: 291 AGNMGSRLLAQWLHNPLRNREHIRARQEAVSA-LQNDY--SALQGYLKTIADIERIAARI 347 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEE-LRGAVEKLKKLPQSLEKTLSSMLS 440 +G P+D++ +RD + + + LPE L + + + + L + Sbjct: 348 AVGSARPRDLSGLRDSLFTLTQL-------RLPESSLLNTLADIFPQGAGIAEKLQQAIL 400 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 + + RDGG + G A LDE R +++ + L+ + E T + LK+++N G Sbjct: 401 PEPAVWLRDGGVINHGFSAELDELRRIQNHGSDFLLELEARERERTGLSTLKVEYNRVHG 460 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 ++IE++ A+ E+ + RQT+ N RF T EL E+++ NA AL +E Sbjct: 461 FYIELSKIQAA------EAPADYQRRQTLKNAERFITPELKTFEDKVLNAQERALTLEKR 514 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 ++ L + +Q L ++ A +D+ A A E +Y P + + +GRHP Sbjct: 515 LYDSLLQELQQQLPLLQRTAKAAAALDVLCCFAHFAAEHDYHAPQFTDYPGIEIDNGRHP 574 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE + F N L + +L LLTGPNMGGKST++RQ A IV++A G Sbjct: 575 VVEGQVPH-----FTPNHTRLD-----HKHRLMLLTGPNMGGKSTYMRQVAHIVLLAHTG 624 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA A IG +D++F+R+G++D+LA+ RSTFMVEM ETA IL AT QS V++DE+GR Sbjct: 625 SFVPAEAARIGQIDQIFTRIGASDDLAANRSTFMVEMSETAYILRHATEQSLVLMDEVGR 684 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GT+T DGL++A A E+L + N+ L ATH+ ELT L + N L + + I+ Sbjct: 685 GTSTFDGLALAQAVAEHLIQKNQSFSLFATHYFELTRLPEQHSAAVNMHLSALEEGQDIV 744 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--KLYHHNQKDMRLYYPEIQ 858 FLH + PG A+ SYGI V KLAGLP + A L+ E H Q DM PE Sbjct: 745 FLHHIEPGPAEKSYGIAVAKLAGLPAPALKAAQKHLEQLEAQAAAHRPQMDM-FSLPEDA 803 Query: 859 TKESK--NNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 E ++++ L+ DE++P AL+ LY Sbjct: 804 VPEHNPAEPAPPAAHPLLQELAALHPDELTPRQALELLY 842 >gi|288928738|ref|ZP_06422584.1| DNA mismatch repair protein MutS [Prevotella sp. oral taxon 317 str. F0108] gi|288329722|gb|EFC68307.1| DNA mismatch repair protein MutS [Prevotella sp. oral taxon 317 str. F0108] Length = 874 Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust. Identities = 280/829 (33%), Positives = 456/829 (55%), Gaps = 31/829 (3%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 + +N + TPMM+Q+ K+ +PD+L+ +R GDFYE + +DA+ ASR LGITLTKR Sbjct: 1 MAQNDQGLTPMMKQFYSFKAKHPDALLLFRCGDFYETYSEDAVEASRVLGITLTKRNNKG 60 Query: 78 GKD-IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTP 136 D M G P H + Y+ KLI+ G R+AIC+Q+E P + K+LV+R + LVTP Sbjct: 61 NTDATEMAGFPHHALDTYLPKLIRAGKRVAICDQLEDP-----KLTKTLVKRGITELVTP 115 Query: 137 GTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPRE 196 G D +L+ ++N+L AV +T +A++DISTG F + D + + P+E Sbjct: 116 GVAMGDTVLNYKENNFLAAVHFGKTACGVAFLDISTGEFITGQGSFDYVEKLLGSFAPKE 175 Query: 197 IIFSEKELSHAEYKSLFETLGN--VAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFS 253 +++ E +H K GN + + F + ++ ++ + FG Sbjct: 176 VLY---ERNHK--KDFERYFGNKHIVFELDDWVFTEQTARQKLLKHFGTKNLKGFGVEHV 230 Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 Q AA A + Y++ TQ N + + + +D +LE+++ + S Sbjct: 231 QSGVVAAGAIMQYLEITQHTNIGHVTSLALIEEDRYVRLDKFTIRSLELIQPMQ-EDGAS 289 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D ++T GGRL + PL + I RLD +++ + P + + L D Sbjct: 290 LLDVVDRTVTAMGGRLLRRWLVFPLKEVKPIEQRLDVVDYIFRYPEFRTLLDEQLHRIGD 349 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R +S++ +GR P+++ +++ + + I L + E +R E++ L +SL Sbjct: 350 LERIISKVAVGRVSPREMVQLKNALLA-IQPLKIACLEADNETIRQIGEQMN-LCESLRD 407 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + + + D P G + +G LDE R++ + + +Q + AE T I +LKI Sbjct: 408 RIENEIQPDPPLVVNRGNVIAEGFSPELDELRNISRGGRDFLIDIQQREAEATGISSLKI 467 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +NN GY++EV ++ KD + + ++ +QT++ R+ T EL + E RI A Sbjct: 468 GYNNVFGYYLEVRNTY-----KD-KVPEEWVRKQTLAQAERYITQELKEYEERILGADEK 521 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 +E F L A E + + V+A +D ++ A A+E Y RP+I++S Sbjct: 522 IQSLEERLFNELVTATQEFIPQIQINANVVARLDCLLSFAKTAEENRYVRPVIEDSDALD 581 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 ++ GRHP++E L + ++ ND L D ++ ++TGPNM GKS LRQ ALI Sbjct: 582 IRQGRHPVIETQLP--LGEHYVPNDIQL----DTERQQIIIITGPNMAGKSALLRQTALI 635 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 V++AQ+GS+VPA A +G+VDK+F+RVG++DN+A G STFMVEM E ++ILN + +S V Sbjct: 636 VLLAQIGSFVPAESARVGLVDKIFTRVGASDNIAQGESTFMVEMTEASNILNNVSPRSLV 695 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHET--NRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 + DE+GRGT+T DG+SIAWA +EYLHE R R L ATH+HEL ++ K+ KR N + Sbjct: 696 LFDELGRGTSTYDGISIAWAIVEYLHEQPKARARTLFATHYHELNEMEKNFKRIKNFNVS 755 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 V + N +IF+ ++ G ++HS+GI V +AG+P +++ RA +LK E Sbjct: 756 VKELNGKVIFMRRLERGGSEHSFGIHVADIAGMPKSIVKRANTVLKQLE 804 >gi|325911928|ref|ZP_08174331.1| DNA mismatch repair protein MutS [Lactobacillus iners UPII 143-D] gi|325476230|gb|EGC79393.1| DNA mismatch repair protein MutS [Lactobacillus iners UPII 143-D] Length = 854 Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust. Identities = 283/872 (32%), Positives = 477/872 (54%), Gaps = 41/872 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY +IK PD+ +FYR+GDFYELF DDA+ ++ L +TLT R K IPM G Sbjct: 6 TPMMEQYYKIKQQYPDAFLFYRVGDFYELFEDDAVKGAKLLELTLTHRSNKSAKPIPMAG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP + YI L+ G+++AICEQ+E P +A+ +V+R +++LVTPGT+ D Sbjct: 66 VPHLAVDSYINTLVDKGYKVAICEQLEDPKKAQ-----GMVKRGIIQLVTPGTVINDNPD 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 +SNYL ++ W + + D+STG + ++ + ++++++ + RE+++ E Sbjct: 121 QAKESNYLTSLCSSSQGWGLTYCDLSTGESYATHLTSWEMIVNELLSLQTRELVYGETLT 180 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S K +F + ++QP +++ + + T +Q+E A + Sbjct: 181 SD---KQIFLKKAGITLSQP----------VKLSGEHAEVSYVTQQLHNQLEIAATKQLL 227 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILR-TLSGSREQSLLKTIDYSIT 323 +Y+ TQ + + + + L + ++NLE+++ T +G + SL +D + T Sbjct: 228 AYLLATQKRSLAHLQVTQSYEPNQYLQMSHIVQTNLELIKSTKTGKKMGSLFWLLDKTST 287 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 GGRL I PL ++I +R + ++ I K L+ D+ R R+ + Sbjct: 288 AMGGRLLKSWIERPLISLSEIKSRQLVVTALFEDYFSREKIIKQLQGVYDLERLTGRVAL 347 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFL--KNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 G +++ + D + I+N+ KN++ ++ LK + + KT+ + Sbjct: 348 GSANARELLQLADSLAVVPEIINILANSKNEVLNNFAQKIDPLKGIHDLIVKTIV----E 403 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + P ++GG ++ G + LD R K+ +A + E+T I NL++ +N GY Sbjct: 404 NPPLSTKEGGIIKSGVSSQLDRYRDAMINGKKWLADMANSEREKTGINNLRVGYNKVFGY 463 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IEVT+S K+ DR++ +QT++N R+ T+EL + E I A + + +E E Sbjct: 464 YIEVTNSY-----KNKVPLDRYMRKQTLTNAERYITVELKEHEALILEAQDYSTDLEYEL 518 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY-CRPIIDNSTNFIVKDGRHP 620 F L I + +L ++ ++ +D+ ++L+++ NY C +S+ + +GRHP Sbjct: 519 FTNLREDIKKYIPALQKLAKQLSSLDVLSTFSLLSEQNNYVCPQFSQDSSAINIVNGRHP 578 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + S + +I ND + ++L+TGPNM GKST++RQ ALI+IMAQ+G Sbjct: 579 VVEKVM---SDEEYIPNDVKMD-----EQTNIFLITGPNMSGKSTYMRQLALIIIMAQIG 630 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 ++PA A + I DK+F+R+G+ D+L SG+STFMVEM E L AT +S ++ DEIGR Sbjct: 631 CFIPADSAVLPIFDKIFTRIGAGDDLISGKSTFMVEMSEANIALKNATKRSLILFDEIGR 690 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A I+YLH+ + L ATH+HELTDL + L N + + N +I Sbjct: 691 GTATYDGMALAGAIIKYLHDKVGAKTLFATHYHELTDLDQELAHLKNIHVGATQENGHLI 750 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 FLHK++PG AD SYGI V +LAGLP V+ A +LK EK + NQ ++ Sbjct: 751 FLHKILPGAADQSYGIHVAQLAGLPTKVLREATHMLKQLEK-HSDNQAAFSDEQLDLFGS 809 Query: 861 ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALK 892 ++ +S ++ + +IK L L+E++PL ++ Sbjct: 810 SDQHKMSDEEQDVLTQIKNLYLNEITPLQVMQ 841 >gi|148359351|ref|YP_001250558.1| DNA mismatch repair protein MutS [Legionella pneumophila str. Corby] gi|148281124|gb|ABQ55212.1| DNA mismatch repair protein MutS [Legionella pneumophila str. Corby] gi|307610506|emb|CBX00089.1| DNA mismatch repair protein MutS [Legionella pneumophila 130b] Length = 839 Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust. Identities = 289/824 (35%), Positives = 463/824 (56%), Gaps = 49/824 (5%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY+ IK+ PD L+FYRMGDFYELFFDDA AS+ L +TLT RG+ K IPM GVP Sbjct: 1 MMQQYLRIKTDYPDMLLFYRMGDFYELFFDDAKRASQLLDLTLTHRGQSADKPIPMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H +Y+ +L+K G +AICEQI P +K V R V R++TPGT+T++ LL Sbjct: 61 YHAVENYLARLLKKGESVAICEQIGDP-----ATSKGPVERQVTRIITPGTVTDEALLDA 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEKELS 205 N L+A+ + + IAW+D+ G F + T H +L ++++R+ P E++ E Sbjct: 116 RKDNILLAIHTQKQKIGIAWVDLGGGRFHLQELTEEH-QLNAELVRLQPAELLCKES--- 171 Query: 206 HAEYKSLFETLGNVAVA-QPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAAAAA 263 L N AV +P FD S + + + +++T + FG + AA A Sbjct: 172 ----TPLPSFCSNFAVKFRPGWEFDASNAHKLLCEQFSVTDLSAFGEQNYPTALIAAGAL 227 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 ++Y+K TQ + P + E + L +D++ + +LE+ + G E LL +D + Sbjct: 228 LAYLKTTQKQSLPHLTTLTLEQSEDYLQLDASTQKHLELFENIHGGGEHCLLSILDKTAC 287 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSIN--FFIQNPILINPIQKILKSSPDVPRSLSRL 381 G RL + PL I TR +I F+Q + + +++K DV R +SR+ Sbjct: 288 AMGSRLLKRWLGKPLKQHAIIQTRQQAIKEIIFLQQDV---SLHQLIKQCADVERIVSRI 344 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKK---LPQSLEKTLS 436 + P+D+ S + L L + ++L E + ++KK L++ L Sbjct: 345 ALKSARPRDLV-------SLLQTLTLLPAIHDELQENKSLLINEIKKEISPLPLLQQLLE 397 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + + D+ P RDGG + G D LDE R+L + + L+ + T + LK+ +N Sbjct: 398 TAIIDNPPMLIRDGGVIAPGFDEELDELRNLSSNAHETLVKLEQEEKNRTGLSTLKLGYN 457 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 + G++IE++ + A + F +QT+ N+ R+ T EL E+++ +A + AL Sbjct: 458 SVQGFYIELSKAQAQ------NAPPHFHRKQTLKNVERYITPELKLFEDKVLSAQSKALA 511 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 E ++ L I + L + ++ +A +D+ + LA A+ N+ P + + +++ Sbjct: 512 REKWLYDNLLEEIQQYIPELSDLAKSLAQLDVLVTLAERAQSLNWNCPNLVPESGIMIQA 571 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP++E L+++ FIAND +L PN + L+TGPNMGGKST++RQ ALIV++ Sbjct: 572 GRHPVIEPLLQER----FIANDLELK-PNQN----MLLITGPNMGGKSTYMRQTALIVLL 622 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A +GS+VPA +G +D++F+R+G++D+L+SGRSTFMVEM ETA IL QAT+QS V++D Sbjct: 623 AHIGSFVPADKVTLGPLDRIFTRIGASDDLSSGRSTFMVEMTETAQILRQATSQSLVLID 682 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DG+++A+A+ +L T + L +TH+ ELT+L K N LQ S Sbjct: 683 EIGRGTSTYDGMALAYASCAFLASTIKAYTLFSTHYLELTELPKEFSCIRNVHLQASIKT 742 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 I+FL++V G A+ SYG++V +LAG+P V+ A++ L + Sbjct: 743 GQIVFLYRVEEGCANRSYGLEVAELAGIPKEVLKLAHEHLNQIQ 786 >gi|312875171|ref|ZP_07735184.1| DNA mismatch repair protein MutS [Lactobacillus iners LEAF 2053A-b] gi|311089278|gb|EFQ47709.1| DNA mismatch repair protein MutS [Lactobacillus iners LEAF 2053A-b] Length = 854 Score = 476 bits (1224), Expect = e-132, Method: Compositional matrix adjust. Identities = 283/872 (32%), Positives = 475/872 (54%), Gaps = 41/872 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY +IK PD+ +FYR+GDFYELF DDA+ ++ L +TLT R K IPM G Sbjct: 6 TPMMEQYYKIKQQYPDAFLFYRVGDFYELFEDDAVKGAKLLELTLTHRSNKSAKPIPMAG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP + YI L+ G+++AICEQ+E P +A+ +V+R +++LVTPGT+ D Sbjct: 66 VPHLAVDSYINTLVDKGYKVAICEQLEDPKKAQ-----GMVKRGIIQLVTPGTVINDNPD 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 +SNYL ++ W + + D+STG + ++ + ++++++ + RE+++ E Sbjct: 121 QAKESNYLTSLCSNSQGWGLTYCDLSTGESYATHLTSWEMIVNELLSLQTRELVYGETLT 180 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S K +F + ++QP +++ + + T +Q+E A + Sbjct: 181 SD---KQIFLKKAGITLSQP----------VKLSKEHAEVSYVTQQLHNQLEIAATKQLL 227 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSIT 323 +Y+ TQ + + + + L + ++NLE++++ +G + SL +D + T Sbjct: 228 AYLLATQKRSLAHLQVTQSYEPNQYLQMSHIVQTNLELIKSAKTGKKMGSLFWLLDKTST 287 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 GGRL I PL ++I +R + + I K L+ D+ R R+ + Sbjct: 288 AMGGRLLKSWIERPLISLSEIKSRQLVVTALFDDYFSREKIIKQLQGVYDLERLTGRVAL 347 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFL--KNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 G +++ + D + I+N+ KN++ ++ LK + + KT+ + Sbjct: 348 GSANARELLQLADSLAVVPEIINILANSKNEVLNNFAQKIDPLKGIHDLIVKTIV----E 403 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + P ++GG ++ G + LD R K+ +A + E+T I NL++ +N GY Sbjct: 404 NPPLSTKEGGIIKAGVSSQLDRYRDAMMNGKKWLADMANSEREKTGINNLRVGYNKVFGY 463 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IEVT+S KD DR++ +QT++N R+ T+EL + E I A + + +E E Sbjct: 464 YIEVTNSY-----KDKVPLDRYMRKQTLTNAERYITVELKEHEALILEAQDYSTDLEYEL 518 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY-CRPIIDNSTNFIVKDGRHP 620 F L I + +L ++ ++ +D+ ++L+++ NY C +S+ + +GRHP Sbjct: 519 FTNLREDIKKYIPALQKLAKQLSSLDVLATFSLLSEQNNYVCPQFSQDSSAINIVNGRHP 578 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + S + +I ND + ++L+TGPNM GKST++RQ ALI+IMAQ+G Sbjct: 579 VVEKVM---SDEEYIPNDVKMD-----EQTNIFLITGPNMSGKSTYMRQLALIIIMAQIG 630 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 ++PA A + I DK+F+R+G+ D+L SG+STFMVEM E L AT +S ++ DEIGR Sbjct: 631 CFIPADSAALPIFDKIFTRIGAGDDLISGKSTFMVEMSEANIALKNATKRSLILFDEIGR 690 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A I+YLH+ + L ATH+HELTDL + L N + + N +I Sbjct: 691 GTATYDGMALAGAIIKYLHDKVGAKTLFATHYHELTDLDQELAHLKNIHVGATQENGHLI 750 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 FLHK++PG AD SYGI V +LAGLP V+ A +LK EK + NQ ++ Sbjct: 751 FLHKILPGAADQSYGIHVAQLAGLPTKVLREATHMLKQLEK-HSDNQAAFSDEQLDLFGS 809 Query: 861 ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALK 892 + +S ++ + +IK L L+E++PL ++ Sbjct: 810 SDQPKMSDEEQDVLTQIKNLYLNEITPLQVMQ 841 >gi|312870460|ref|ZP_07730580.1| DNA mismatch repair protein MutS [Lactobacillus oris PB013-T2-3] gi|311094017|gb|EFQ52341.1| DNA mismatch repair protein MutS [Lactobacillus oris PB013-T2-3] Length = 884 Score = 476 bits (1224), Expect = e-132, Method: Compositional matrix adjust. Identities = 300/919 (32%), Positives = 486/919 (52%), Gaps = 90/919 (9%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TPMM QY ++K PD+ +FYR+GDFYELF +DA+ ++ L +TLT R IP Sbjct: 3 KKQTPMMEQYQKVKDQYPDAFLFYRLGDFYELFNEDAVKGAQLLELTLTTRNHSAKNPIP 62 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP Y+ LI G+++AICEQ+E P +AK +V+R V RL+TPGT + Sbjct: 63 MCGVPHRAVESYVDVLIDKGYKVAICEQMEDPKKAK-----GMVKRAVTRLITPGTQMDL 117 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSE 201 +NYL A+++ ++ +A+ D+STG K S + + +I++++ + +E++ E Sbjct: 118 NGDQARQNNYLAAISQADNQFNLAYTDLSTGELKTTSLGSVEGVINELINLQSKEVV-GE 176 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 +L A K+ ++ + QP + IS Y + G ++ Sbjct: 177 GDLP-ARLKTALDSRHILLSQQPEILKRSEIS-------YLTQDLTAAG-----QRHVVG 223 Query: 262 AAISYIKKTQMVNKPTIGYPERE---DIQSTLFIDSAARSNLEILRTL-SGSREQSLLKT 317 +SY+ TQ K ++ + +R S + ID +++NLE++ L SG R+ +L Sbjct: 224 LLVSYLLTTQ---KRSLAHMQRAIAYQPSSFMKIDHYSKTNLELMTNLRSGKRQGTLSWL 280 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D + T G RL + PL D I R D + + + + +Q+ L D+ R Sbjct: 281 LDETKTAMGSRLLKRWLDRPLIDPAAIKERQDKVAELLDHYFERSNLQEELIKVYDLERL 340 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKTL 435 R+ G +D+ ++ + I + D P +L ++ L + +++ + Sbjct: 341 AGRVAYGSVNGRDLIQLKTSLEQVPKIKYVLETLDSPVFTDLTSRLDPLTDIADLIDRAI 400 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 ++ P DGG ++DG + LD+ R + K+ IA LQ + + T I NLKI + Sbjct: 401 V----EEPPIAVTDGGVIKDGYNDQLDQYRDAMNNGKQWIADLQEQERQVTGINNLKIGY 456 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N+ GYFIEVT + D +DR+ +QT+ N RF+T EL + E I A ++ Sbjct: 457 NHVFGYFIEVTK-----VNLDKIPRDRYERKQTLVNAERFSTPELKEKEALILGAQEKSV 511 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E + F + + EQ + L +Q ++ +D+ + A+++++ ++ RPI+++ +K Sbjct: 512 ALEYDLFVKIREQVKEQIQRLQKLAQALSELDVLQSFAVVSEDYHFVRPIMNSGHQLQIK 571 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 DGRHP+VEK + Q ++ ND + D + L+TGPNM GKST++RQ AL + Sbjct: 572 DGRHPVVEKFMGHQE---YVPNDVQMGDDTD-----ILLITGPNMSGKSTYMRQLALTAV 623 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQMG +VPAS A + I D++F+R+G+AD+L SG STFMVEM+E + L+ AT++S ++ Sbjct: 624 MAQMGCFVPASRAELPIFDQIFTRIGAADDLISGESTFMVEMMEANNALSHATDRSLILF 683 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGTAT DG+++A A IEY+H+ R + L +TH+HELT L ++L R N + + Sbjct: 684 DEIGRGTATYDGMALAQAIIEYVHQHVRAKTLFSTHYHELTSLEETLPRLKNVHVGAMEK 743 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK-------------- 841 N ++FLHKV G AD SYGI V KLAG+P ++ RA IL+ E Sbjct: 744 NGELVFLHKVSAGPADKSYGIHVAKLAGMPVPLLKRADQILQKLENKEAELAKKGAAAPT 803 Query: 842 -------------------------LYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEK 876 L N + M L+ P+ K+ L K ++ + + Sbjct: 804 NQPTPQQPAAQPNDRVQEAPAAAAPLVEQNGQ-MELFNPQPAAKK----LDKKEERVLNQ 858 Query: 877 IKCLNLDEMSPLTALKTLY 895 +K LNL M+P+ + LY Sbjct: 859 LKELNLMGMTPMEVMNQLY 877 >gi|332519938|ref|ZP_08396402.1| DNA mismatch repair protein MutS [Lacinutrix algicola 5H-3-7-4] gi|332044497|gb|EGI80691.1| DNA mismatch repair protein MutS [Lacinutrix algicola 5H-3-7-4] Length = 862 Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust. Identities = 305/877 (34%), Positives = 483/877 (55%), Gaps = 34/877 (3%) Query: 29 MRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPV 88 M+QY IK+ PD+L+ +R+GDFYE F DA+ A+ LGI LTKRG + + G P Sbjct: 1 MKQYNAIKAKYPDALLLFRVGDFYETFGSDAVKAAGILGIILTKRGAGSETETELAGFPH 60 Query: 89 HTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPT 148 H+ N Y+ KL+K G R+AIC+Q+E P + K++V+R V LVTPG D++L Sbjct: 61 HSLNTYLPKLVKAGERVAICDQLEDP-----KQTKTIVKRGVTELVTPGVALNDEVLQSK 115 Query: 149 DSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS-EKELSHA 207 +N+L +V + IA++DISTG F S N + + + P EI+ S +K L A Sbjct: 116 TNNFLCSVYFGKNTIGIAFLDISTGEFLTSQGNQEYIDKLLQNFSPSEILVSKQKRLQFA 175 Query: 208 E-YKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI-S 265 E + F T + + S + ++N ++ FG + E A+ +I Sbjct: 176 ENFGEDFHTFN-----LEDWVYQSDYSNETLLKHFNTKSLKGFGVENLTEGIIASGSILH 230 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y+ +TQ I R +++D NLE+ + + + +LL ID +I+ Sbjct: 231 YLSETQHNKLEHITSVSRIAEDEYVWMDRFTIRNLELYNS-TNNNAVTLLNVIDKTISPM 289 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 GGRL +A PL + +I R + ++F + IQ +KS DV R +S++ G+ Sbjct: 290 GGRLLKRWLALPLKNVERIKQRHEVVSFLKAEKTIHQKIQNHIKSIGDVERLISKVATGK 349 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPT 445 P+++ +++ + S I I L D E L+ + L+ L + L ++ P Sbjct: 350 VSPREVIQLKNSLESIIPIKALSSNCD-NESLKIIGDTLQGC-DILRDKIKQTLDEEAPV 407 Query: 446 FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEV 505 G + G LDE R L K + ++ + +E T I +LKI NN GY+IEV Sbjct: 408 NILKGKTIATGFSNELDELRELSASGKSYLDNMLKRESERTGITSLKIASNNVFGYYIEV 467 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEIL 565 ++ KD + + +I +QT+ N R+ T EL + E +I A IE + F L Sbjct: 468 RNTH-----KD-KVPEEWIRKQTLVNAERYITEELKEYEAKILGAEERITTIEQKLFAEL 521 Query: 566 SNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKT 625 + + + + + +IA +D + LA E NY P IDNS + + +GRHP++EK Sbjct: 522 VLWMNQYIKPVQQNAFLIAKLDCLCGFSQLANENNYVYPEIDNSYDLEIIEGRHPVIEKQ 581 Query: 626 LKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPA 685 L + +IAN+ L D+++ ++ ++TGPNM GKS LRQ ALIV++AQ+GS+VPA Sbjct: 582 LP--IGEQYIANNVFL----DRDTQQIIMITGPNMSGKSAILRQTALIVLLAQIGSFVPA 635 Query: 686 SYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATL 745 A IG+VDK+F+RVG++DN++ G STFMVEM ETASILN +++S V+LDEIGRGT+T Sbjct: 636 EKARIGLVDKIFTRVGASDNISMGESTFMVEMNETASILNNMSDRSLVLLDEIGRGTSTY 695 Query: 746 DGLSIAWATIEYLHE-TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHK 804 DG+SIAWA EYLHE + + L ATH+HEL +++++ R N + V + + ++FL K Sbjct: 696 DGISIAWAISEYLHEHPAKAKTLFATHYHELNEMTETFPRIKNFNVSVKELKDNVLFLRK 755 Query: 805 VIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKN 864 ++ G ++HS+GI V KLAG+P V+ RA ILK E+ H+ +++ I+ + + Sbjct: 756 LVEGGSEHSFGIHVAKLAGMPQQVLRRANKILKKLEQ--SHSSEELTDKVKSIKDEMQLS 813 Query: 865 NLSKNDKLF---VEKIKCLNLDEMSPLTALKTLYAVK 898 + +D L E+I +++ ++P+ AL L +K Sbjct: 814 FFNLDDPLLEQIKEEILLTDINTLTPVEALMKLNEIK 850 >gi|317129122|ref|YP_004095404.1| DNA mismatch repair protein MutS [Bacillus cellulosilyticus DSM 2522] gi|315474070|gb|ADU30673.1| DNA mismatch repair protein MutS [Bacillus cellulosilyticus DSM 2522] Length = 872 Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust. Identities = 307/898 (34%), Positives = 491/898 (54%), Gaps = 66/898 (7%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD-I 81 K TPM+ QY+ IK+ D+ +F+R+GDFYELFFDDA A+ L ITLT RGK G+D I Sbjct: 3 KQVTPMIEQYLSIKAQYEDAFLFFRLGDFYELFFDDAKKAASELEITLTSRGK--GEDAI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A YI +LI G ++AICEQ E P AK +VRR VV+++TPGT+ E Sbjct: 61 PMCGVPHHSAEQYISQLINNGFKVAICEQTEDPQLAK-----GVVRREVVQVITPGTVME 115 Query: 142 DQLLSPTDSNYLMAVARI-RTEWAIAWIDISTGIF--KISTSNHDRLISDIMRIDPREII 198 + D+NYL+++ E +A ID++TG F + + + I ++ P+EI+ Sbjct: 116 GNAVVEKDNNYLLSLTPYSEKELGLAAIDMTTGEFLTTVLAGDFEEAIHEVSSFRPKEIV 175 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISE---SRIADYYNITTVDTFGSFSQV 255 LS + +++ + NV ++ + HS ++ S+I D Q+ Sbjct: 176 IPST-LSD-DKQNMLQQRMNVTLSFEDELAHHSDTDKLISKIED--------------QI 219 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SL 314 + A I Y+ +T + + + + ID ++ NLE++ +L +++ SL Sbjct: 220 AEIACRQLIQYVLRTTKRSLEHLQQANYYETNDFMGIDVHSKRNLELIESLREKKKKGSL 279 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D + T GGRL + I PL +T I R + ++ ++ L + D+ Sbjct: 280 LWVLDETETAMGGRLLKQWIERPLVSNTLIEKRQSLVETLLERFFERETLKVQLNNVYDL 339 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLE 432 R ++ G +D+ ++ +++ I + L N+ EL V +L LE Sbjct: 340 ERLSGKIAFGNVNARDMLQLKRSLQAVPQIFDTVNDLGNNYATELTSGVNDCHELYLLLE 399 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 +++ +D P DG ++DG D LD+ R K IA+L+ K +ET IK+LK Sbjct: 400 NSIN----EDPPVTITDGNIIKDGYDRELDQYRDAMRNGKTWIAALERKERDETGIKSLK 455 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 I N GY+IEVT ++ L + R+ +QT++N R+ T EL + E I A Sbjct: 456 IGFNKVFGYYIEVTKANIPNL-----PEGRYERKQTLANAERYITNELKEKEALILEAEE 510 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 + +E E F + + + L + ++ ID+ + A +A++ +Y +P + N Sbjct: 511 KSEKLEYELFMEIREKVKQFIRPLQKLATSVSTIDVLQSFAEVAEKNHYVKPDVSNEETV 570 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 + DGRHP+VE+ + + ++AND L ++ G L L+TGPNM GKST++RQ AL Sbjct: 571 DIIDGRHPVVEQMIDKGD---YVANDIRL----NEERGML-LITGPNMAGKSTYMRQLAL 622 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 I IMAQ+GS+VPA A + I D++F+R+G+AD+LA G+STFMVEM+ET +++AT S Sbjct: 623 IAIMAQIGSFVPAKNAKLPIFDQIFTRIGAADDLAQGQSTFMVEMMETRHAVSRATKNSL 682 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 ++LDEIGRGT+T DG+++A A +EY+H + L +TH+HELT LS+ L N + Sbjct: 683 ILLDEIGRGTSTYDGMALAQAIMEYIHNEIGAKTLFSTHYHELTTLSEHLSHLRNVHVSA 742 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK-----LYHHNQ 847 + + ++FLHKVI G AD SYGI V +LA LP ++ISRA IL FE+ Y N+ Sbjct: 743 MEEDGKVVFLHKVIDGAADRSYGIYVAELAELPASLISRAKSILNEFEQGDKKHAYISNE 802 Query: 848 KDMRL-------YYPEIQTKESKNN----LSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 + + + E + KNN ++ ++K + ++ +NL +P+ A++ L Sbjct: 803 EKRKTEPVKQLNLFGEAEENYIKNNKQQTITSHEKEIIATLQTINLLRTTPIEAIQVL 860 >gi|309809651|ref|ZP_07703507.1| DNA mismatch repair protein MutS [Lactobacillus iners SPIN 2503V10-D] gi|308170011|gb|EFO72048.1| DNA mismatch repair protein MutS [Lactobacillus iners SPIN 2503V10-D] Length = 854 Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust. Identities = 287/876 (32%), Positives = 480/876 (54%), Gaps = 49/876 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY +IK PD+ +FYR+GDFYELF DDA+ ++ L +TLT R K IPM G Sbjct: 6 TPMMEQYYKIKQQYPDAFLFYRVGDFYELFEDDAVKGAKLLELTLTHRSNKSAKPIPMAG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP + YI L+ G+++AICEQ+E P +A+ +V+R +++LVTPGT+ D Sbjct: 66 VPHLAVDSYINTLVDKGYKVAICEQLEDPKKAQ-----GMVKRGIIQLVTPGTVINDNPD 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 +SNYL ++ W + + D+STG + ++ + ++++++ + RE+++ + Sbjct: 121 QAKESNYLTSLCSNSQGWGLTYCDLSTGESYATHLTSWEMIVNELLSLQTRELVYGKTLT 180 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S K +F + ++QP + S+ ++ I+ V T +Q+E A + Sbjct: 181 SD---KQIFLKKAGITLSQP-------VKLSK--EHAEISYV-TQQLHNQLEIAATKQLL 227 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSIT 323 +Y+ TQ + + + + L + ++NLE++++ +G + SL +D + T Sbjct: 228 AYLLATQKRSLAHLQVTQSYEPNQYLQMSHIVQTNLELIKSAKTGKKMGSLFWLLDKTST 287 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 GGRL I PL ++I +R + + I K L+ D+ R R+ + Sbjct: 288 AMGGRLLKSWIERPLISLSEIKSRQLVVTALFDDYFSREKIIKQLQGVYDLERLTGRVAL 347 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFL--KNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 G +++ + D + I+N+ KN++ ++ LK + + KT+ + Sbjct: 348 GSANARELLQLADSLAVVPEIINILANSKNEVLNNFAQKIDPLKGIHDLIVKTIV----E 403 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + P ++GG ++ G + LD R K+ +A + E+T I NL++ +N GY Sbjct: 404 NPPLSTKEGGIIKAGVSSQLDRYRDAMMNGKKWLADMANSEREKTGINNLRVGYNKVFGY 463 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IEVT+S KD DR++ +QT++N R+ T+EL + E I A + + +E E Sbjct: 464 YIEVTNSY-----KDKVPLDRYMRKQTLTNAERYITVELKEHEALILEAQDYSTDLEYEL 518 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY-CRPIIDNSTNFIVKDGRHP 620 F L I + +L ++ ++ +D+ ++L+++ NY C +S+ + +GRHP Sbjct: 519 FTNLREDIKKYIPALQKLAKQLSSLDVLSTFSLLSEQNNYVCPQFSQDSSAINIVNGRHP 578 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + S + +I ND + ++L+TGPNM GKST++RQ ALI+IMAQMG Sbjct: 579 VVEKVM---SDEEYIPNDVKMD-----EQTNIFLITGPNMSGKSTYMRQLALIIIMAQMG 630 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 ++PA A + I DK+F+R+G+ D+L SG+STFMVEM E L AT +S ++ DEIGR Sbjct: 631 CFIPADSAVLPIFDKIFTRIGAGDDLISGKSTFMVEMSEANIALKNATKRSLILFDEIGR 690 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A I+YLH+ + L ATH+HELTDL + L N + + N +I Sbjct: 691 GTATYDGMALAGAIIKYLHDKVGAKTLFATHYHELTDLDQELAHLKNIHVGATQENGHLI 750 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ-- 858 FLHK++PG AD SYGI V +LAGLP V+ A +LK EK D ++ + + Q Sbjct: 751 FLHKILPGAADRSYGIHVAQLAGLPTKVLREATHMLKQLEK-----NSDNQVAFSDEQLD 805 Query: 859 --TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALK 892 ++ +S ++ + +IK L L+EM+PL ++ Sbjct: 806 LFGSSDQHKMSDEEQDVLTQIKNLYLNEMTPLQVMQ 841 >gi|332283429|ref|YP_004415340.1| DNA mismatch repair protein mu [Pusillimonas sp. T7-7] gi|330427382|gb|AEC18716.1| DNA mismatch repair protein mu [Pusillimonas sp. T7-7] Length = 873 Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust. Identities = 280/844 (33%), Positives = 451/844 (53%), Gaps = 58/844 (6%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 +++L + TPMM+QY+ +K+ L+FYRMGDFYE+F++DA +R L +TLTKRG G Sbjct: 3 KKDLSAHTPMMQQYLRLKAEAGSHLLFYRMGDFYEMFYEDAERGARLLNLTLTKRGTSNG 62 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 IPM GVP H Y+ +L+ +G IAICEQI P +K V R ++R+VTPGT Sbjct: 63 APIPMAGVPFHAMEGYLARLVALGESIAICEQIGDPA-----ASKGPVERKIMRIVTPGT 117 Query: 139 LTEDQLLSPTDSNYLMAVARIRT----EWAIAWIDISTGIFKISTSNHDRLISDIMRIDP 194 LT++ LL + AV R +AW+++++G F+++ + L +++ R++P Sbjct: 118 LTDEALLPAKADRMIAAVYTTRANRSERSGLAWMNLASGEFRVTECTPEMLETELHRVEP 177 Query: 195 REIIFSEKELSHAEYKSLFETLGNVAVAQ---PNVFFDHSISESRIADYYNITTVDTFGS 251 E++ +E GN +A P+ F+ + + ++ + T+ FG Sbjct: 178 AELLCAES----------LRMSGNNGIALTALPDWHFESDGARDVLHRHFAVDTLAGFGL 227 Query: 252 FS-QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR 310 V AA A + Y+ +TQ + I + + +D R NLE+ T+SG Sbjct: 228 VDLPVATCAAGALLRYVSRTQTQSLSHIQTIRVDQAGEYVVLDPVTRKNLELTETISGES 287 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP---------ILI 361 +L T+D+ T G RL + PL D+ R I F+ P + Sbjct: 288 SPTLFSTLDHCQTPMGSRLLRRWLHHPLRDNAPAQGRQQVIATFLSAPPGDDALNAEAPL 347 Query: 362 NPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIR----SGINILNLFLKNDLPEEL 417 + ++++L PD+ R +R+ + P+++A +R+ + ++L F++ +E Sbjct: 348 DTLRQMLDRYPDLERIATRIALRSVRPRELASLREALALLPDVAQHLLRAFVRQPALDEF 407 Query: 418 RGAVEKLKKLPQSLEKTLSSMLSDDLPTFK-RDGGFLRDGADASLDETRSLRDQSKRIIA 476 + ++ Q L++ + D P R+GG + G D+ LDE R L S + Sbjct: 408 IQNISIDSEIAQLLQRAI-----DPEPALLIREGGVIATGYDSELDELRRLASDSGEFLV 462 Query: 477 SLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFT 536 L+ + E T I L++++N G++IEV+ A + + + RQT+ N R+ Sbjct: 463 ELEARERERTGIPTLRVEYNRVHGFYIEVSRGQADKVPAE------YRRRQTLKNAERYI 516 Query: 537 TLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILA 596 T EL E+++ +A + +L E FE L + + +L + +A ID ALA A Sbjct: 517 TPELKTWEDKVLSAKDRSLSREKWLFESLLEQLAGYASALSQCAATLAQIDALAALAEHA 576 Query: 597 KEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLT 656 + ++ P + ++ GRHP+VE ++++ F NDC+L ++ L+T Sbjct: 577 QANDWTAPELLEGNEIFIEAGRHPVVEHSIER-----FTPNDCELGPQR-----RMLLIT 626 Query: 657 GPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVE 716 GPNMGGKST++RQ ALI ++A++GS+VPA A IG +D++F+R+G+AD+LA GRSTFM+E Sbjct: 627 GPNMGGKSTYMRQIALIALLARIGSFVPARSARIGRIDRIFTRIGAADDLAGGRSTFMME 686 Query: 717 MIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELT 776 M E ASIL+ +T QS V++DEIGRGT+T DGL++AW+ L N+ L ATH+ E+T Sbjct: 687 MTEAASILSASTPQSLVLMDEIGRGTSTYDGLALAWSIAHRLLTHNQALTLFATHYFEIT 746 Query: 777 DLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 L N L ++S+ GI+FLH+V G A SYGIQV + AG+P VI A L Sbjct: 747 RLPTEAPGAANVHLAAAESSSGIVFLHEVQSGPASRSYGIQVAQRAGIPAAVIRHASREL 806 Query: 837 KTFE 840 E Sbjct: 807 SRLE 810 >gi|260910738|ref|ZP_05917396.1| DNA mismatch repair protein MutS [Prevotella sp. oral taxon 472 str. F0295] gi|260635154|gb|EEX53186.1| DNA mismatch repair protein MutS [Prevotella sp. oral taxon 472 str. F0295] Length = 874 Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust. Identities = 279/829 (33%), Positives = 454/829 (54%), Gaps = 31/829 (3%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 + +N + TPMM+Q+ K+ +PD+L+ +R GDFYE + +DA+ ASR LGITLTKR Sbjct: 1 MAQNDQGLTPMMKQFYSFKAKHPDALLLFRCGDFYETYSEDAVEASRVLGITLTKRNNKG 60 Query: 78 GKD-IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTP 136 D M G P H + Y+ KLI+ G R+AIC+Q+E P + K+LV+R + LVTP Sbjct: 61 NSDATEMAGFPHHALDTYLPKLIRAGKRVAICDQLEDP-----KLTKTLVKRGITELVTP 115 Query: 137 GTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPRE 196 G D +L+ ++N+L A+ +T +A++DISTG F + D + + P+E Sbjct: 116 GVAMGDTVLNYKENNFLAAIHFGKTACGVAFLDISTGEFITGQGSFDYVEKLLGSFAPKE 175 Query: 197 IIFSEKELSHAEYKSLFETLGN--VAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFS 253 +++ E +H K GN + F + ++ ++ + FG Sbjct: 176 VLY---ERTHK--KDFERYFGNKHCVFELDDWVFTEQTARQKLLKHFGTQNLKGFGVEHV 230 Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 Q AA A + Y++ TQ N I + + +D +LE+++ + S Sbjct: 231 QSGVVAAGAIMQYLEITQHTNIGHITSLALIEEDRYVRLDKFTIRSLELIQPMQDD-GAS 289 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D ++T GGRL + PL + I RLD +++ + P + + L D Sbjct: 290 LLNVVDRTVTAMGGRLLRRWLVFPLKEVKPIEQRLDVVDYIFRYPEYRALLDEQLHRIGD 349 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R +S++ +GR P+++ +++ +++ I L + E +R E++ L +SL Sbjct: 350 LERIISKVAVGRVSPREMVQLKNALQA-IQPLKIACLESDNETIRQIGEQMN-LCESLRD 407 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + + D P G + +G LDE R++ + + +Q + AE T I +LKI Sbjct: 408 RIEHEIQPDPPLVVNRGNVIAEGFSPELDELRNISRGGRDFLIDIQQREAESTGISSLKI 467 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +NN GY++EV ++ KD + + ++ +QT++ R+ T EL + E RI A Sbjct: 468 GYNNVFGYYLEVRNTY-----KD-KVPEEWVRKQTLAQAERYITQELKEYEERILGADEK 521 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 +E F L A E + + V+A +D ++ A A+E Y RP+I++S Sbjct: 522 IQSLEERLFNELVTATQEFIPQIQINANVVARLDCLLSFAKTAEENRYVRPVIEDSDALD 581 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 ++ GRHP++E L + ++ ND L D ++ ++TGPNM GKS LRQ ALI Sbjct: 582 IRQGRHPVIETQLP--PGEHYVPNDIQL----DTERQQIIIITGPNMAGKSALLRQTALI 635 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 V++AQ+G +VPA A +G+VDK+F+RVG++DN+A G STFMVEM E ++ILN + +S V Sbjct: 636 VLLAQIGCFVPAESARVGLVDKIFTRVGASDNIAQGESTFMVEMTEASNILNNVSPRSLV 695 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHET--NRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 + DE+GRGT+T DG+SIAWA +EYLHE R R L ATH+HEL ++ K+ KR N + Sbjct: 696 LFDELGRGTSTYDGISIAWAIVEYLHEQPKARARTLFATHYHELNEMEKNFKRIKNFNVS 755 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 V + N +IF+ ++ G ++HS+GI V +AG+P +++ RA +LK E Sbjct: 756 VKELNGKVIFMRRLERGGSEHSFGIHVADIAGMPKSIVKRANTVLKQLE 804 >gi|322386537|ref|ZP_08060164.1| DNA mismatch repair protein HexA [Streptococcus cristatus ATCC 51100] gi|321269456|gb|EFX52389.1| DNA mismatch repair protein HexA [Streptococcus cristatus ATCC 51100] Length = 849 Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust. Identities = 284/820 (34%), Positives = 449/820 (54%), Gaps = 46/820 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYPDAFLLFRMGDFYELFYDDAVNAAQILEISLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI L++ G+++AI EQ+E P EAK +V+R VV+++TPGT+ + Sbjct: 67 VPYHSAQQYIDVLVESGYKVAIAEQMEDPKEAK-----GVVKREVVQVITPGTVVDS--- 118 Query: 146 SPTDS--NYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEK 202 S DS N+L+A+ + +A++D+ TG F++++ L+ +I + RE++ Sbjct: 119 SKQDSANNFLVALDYSEGLYGLAYMDLVTGEFQVTSLEDFALVCGEIRNLKAREVVLG-- 176 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS-FSQVEKTAAA 261 +L E V Q N+ S ++ + D V G S +E+ AA Sbjct: 177 -------YALPEAEEQVLAGQMNLLL--SYVQTALDD------VQLLGEELSPMERQAAG 221 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 + Y+ +TQM + + +I+ L +D A +++L++ SG + SL +D Sbjct: 222 KLLEYVHRTQMRELSHLKKAQHYEIKDFLQMDYATKASLDLTENARSGKKHGSLYWLMDE 281 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGR+ I PL D +I+ R + + F+++ + + + LK D+ R SR Sbjct: 282 TKTAMGGRMLRSWIQRPLIDEVRISQRQNVVEVFLEHFFERSDLTESLKGVYDIERLASR 341 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + G+ PKD+ + + + + L+ L +E L +P+ L +SS +S Sbjct: 342 VSFGKTNPKDLLQLAATL-GNVPQIKAILQGIGSPHLAHLIEGLDPIPE-LAGLISSAIS 399 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D P +G +R G D +LD+ R + + IA L++K + I NLKI +N G Sbjct: 400 PDAPHIITEGNIIRTGFDETLDQYRLVLREGTGWIAELEVKERANSGINNLKIDYNKKDG 459 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+ VT+S + F + T+ N RF T EL +E + A + +E E Sbjct: 460 YYFHVTNSQLA------HVPGHFFRKATLKNSERFGTEELARIEGEMLEAREKSANLEYE 513 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F + + + + L +Q +A +D+ + A +A++Q+ RP+ ++ GRH Sbjct: 514 IFMRIREEVGKYIQRLQALAQTLAAVDVLQSFAAVAEQQHLVRPVFTAERRLQIEKGRHA 573 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + QS +I N L D + L+TGPNM GKST++RQ A+IVIMAQMG Sbjct: 574 VVEKVMGAQS---YIPNSILLDQETD-----IQLITGPNMSGKSTYMRQLAIIVIMAQMG 625 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 SYVPA A + + D +F+R+G+AD+L SG+STFMVEM+E + QA+ +S ++ DE+GR Sbjct: 626 SYVPAQSASLPLFDAIFTRIGAADDLVSGQSTFMVEMMEANRAIRQASERSLILFDELGR 685 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A IE++H + L ATH+HELT L SL+ N + + E + Sbjct: 686 GTATYDGMALAQAIIEHIHHYTGAKTLFATHYHELTALEDSLEHLENVHVATLEKAEQVT 745 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 FLHK+ PG AD SYGI V K+AGLP ++ RA IL E Sbjct: 746 FLHKIEPGPADKSYGIHVAKIAGLPEKLLERADSILSHLE 785 >gi|238791266|ref|ZP_04634905.1| DNA mismatch repair protein mutS [Yersinia intermedia ATCC 29909] gi|238729399|gb|EEQ20914.1| DNA mismatch repair protein mutS [Yersinia intermedia ATCC 29909] Length = 819 Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust. Identities = 296/857 (34%), Positives = 470/857 (54%), Gaps = 45/857 (5%) Query: 48 MGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAI 107 MGDFYELF+ DA AS+ L I+LTKRG G+ IPM GVP H+ +Y+ KL+++G AI Sbjct: 1 MGDFYELFYSDAKRASQLLDISLTKRGASAGEPIPMAGVPYHSIENYLAKLVQLGESAAI 60 Query: 108 CEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAW 167 CEQI P +K V R VVR+VTPGT++++ LL N L A+ + + A Sbjct: 61 CEQIGDPAT-----SKGPVERKVVRIVTPGTVSDEALLQERQDNLLAAIWQDARGFGYAT 115 Query: 168 IDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSE--KELSHAEYKSLFETLGNVAVAQP 224 +DIS+G F+++ ++ + + +++ R P E+++ E +++S E++ +P Sbjct: 116 LDISSGRFRVAEPADLETMAAELQRTHPAELLYPENFEQMSLIEHRHGLRR-------RP 168 Query: 225 NVFFDHSISESRIADYYNITTVDTFGSFSQVEKT--AAAAAISYIKKTQMVNKPTIGYPE 282 F+ + ++ + + FG Q + AA + Y+K TQ + P I Sbjct: 169 LWEFELETARQQLNLQFGTRDLIGFG-VEQAHQALRAAGCLLQYVKDTQRTSLPHIRGLT 227 Query: 283 REDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDST 342 E Q + +D+A R NLE+ + LSG E +L +D S+T G R+ + P+ D Sbjct: 228 MERQQDGIVMDAATRRNLELTQNLSGGSENTLAAILDCSVTAMGSRMLKRWLHMPVRDIK 287 Query: 343 KINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGI 402 ++ R +I +Q+ + +Q L+ D+ R L+RL + P+D+A +R + Sbjct: 288 VLSDRQQAIGG-LQD--ITAELQTPLRQVGDLERILARLALRTARPRDLARMRHAFQQLP 344 Query: 403 NILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLD 462 I L D+P ++ + ++ + + L+ L + + P RDGG + G +A LD Sbjct: 345 EIHRLLQSVDVPH-VQNLLSQVGQFDE-LQDLLVRAIVEAPPVLVRDGGVIAPGYNAELD 402 Query: 463 ETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDR 522 E R+L D + + L+++ E+ + LK+ N GY+I+V+ + ++ Sbjct: 403 EWRALADGATDYLDRLEIREREKLGLDTLKVGFNGVHGYYIQVSRGQSHLVPI------H 456 Query: 523 FIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQV 582 ++ RQT+ N R+ EL + E+++ + AL IE +E + + ++ L ++ Sbjct: 457 YVRRQTLKNAERYIIPELKEYEDKVLTSKGKALAIEKGLYEEIFDLLLPHLPELQISANA 516 Query: 583 IAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLS 642 +A +D+ LA A+ NY P + + + GRHP+VE+ L S+PFI+N LS Sbjct: 517 LAELDVLANLAERAETLNYNCPTLSDKPGIKITGGRHPVVEQVL----SEPFISNPLTLS 572 Query: 643 CPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGS 702 ++ ++TGPNMGGKST++RQ ALIV++A MGSYVPA A IG VD++F+RVG+ Sbjct: 573 PQR-----RMLIITGPNMGGKSTYMRQTALIVLLAHMGSYVPAESAIIGPVDRIFTRVGA 627 Query: 703 ADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETN 762 AD+LASGRSTFMVEM ETA+IL+ AT QS V++DEIGRGT+T DGLS+AWA E L Sbjct: 628 ADDLASGRSTFMVEMTETANILHNATEQSLVLMDEIGRGTSTYDGLSLAWACAENLASRI 687 Query: 763 RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLA 822 + L ATH+ ELT L + ++ N L + E I F+H V G A SYG+ V LA Sbjct: 688 KAMTLFATHYFELTTLPEKMEGVVNVHLDAMEHGETIAFMHSVQDGAASKSYGLAVAALA 747 Query: 823 GLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNL 882 G+P VI RA LK E L +N ++ ++ L++ VE ++ L+ Sbjct: 748 GVPRDVIKRARQKLKELESL-SNNAAASKIDGSQLTL------LNEETPPAVEALEALDP 800 Query: 883 DEMSPLTALKTLYAVKA 899 D +SP AL+ +Y +K+ Sbjct: 801 DSLSPRQALEWIYRLKS 817 >gi|306826023|ref|ZP_07459359.1| DNA mismatch repair protein MutS [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431739|gb|EFM34719.1| DNA mismatch repair protein MutS [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 844 Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust. Identities = 294/883 (33%), Positives = 479/883 (54%), Gaps = 58/883 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYVDIKKQYPDAFLLFRMGDFYELFYEDAINAAQILEISLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI+ G+++AI EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPYHSAQQYIDVLIEQGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSSK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEKEL 204 + +N+L+A+ R ++ +A++D+ TG F ++ L+ +I + RE++ +L Sbjct: 121 PDSQNNFLVALDRDDNQFGLAYMDLVTGDFYVTGLLDFTLVCGEIRNLKAREVVLG-YDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E + L + V + F D + + R+AD VE+ AA+ + Sbjct: 180 SEEEEQILSHQMNLVLSYEKEGFEDLHLLDPRLAD---------------VEQAAASKLL 224 Query: 265 SYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 Y+ +TQM KP I Y +I+ L +D A +++L+++ SG ++ SL +D Sbjct: 225 QYVHRTQMRELNHLKPVIRY----EIKDFLQMDYATKASLDLVENARSGKKQGSLFWLLD 280 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL I PL D +I R + + F+ + + + LK D+ R S Sbjct: 281 ETKTAMGMRLLRSWIHRPLIDKERIVQRQEVVQVFLDHFFERSDLTDSLKGVYDIERLAS 340 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G+ PKD+ + + S I + + P L +E+L +P+ LE +S+ + Sbjct: 341 RVSFGKTNPKDLLQLATTLSSVPRIRAILEGMEQPA-LAYLIEQLDAIPE-LESLISAAI 398 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + + P +GG +R G D +LD+ R + + IA ++ K E + I LKI +N Sbjct: 399 APEAPHVITEGGIIRTGFDETLDKYRRVLREGTSWIAEIEAKERENSGISTLKIDYNKKD 458 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+ VT+S + F + T+ N RF T EL +E + A + +E Sbjct: 459 GYYFHVTNSQLGNVPA------HFFRKATLKNSERFGTEELARIEGDMLEAREKSANLEY 512 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F + + + + L +Q IA +D+ +LA++A+ Q+ RP + + ++ GRH Sbjct: 513 EIFMRIREEVSKYIQRLQALAQGIATVDVLQSLAVVAETQHLIRPEFGDDSQIDIQKGRH 572 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 +VEK + Q+ +I N ++ + L+TGPNM GKST++RQ A+ +MAQ+ Sbjct: 573 AVVEKVMGAQT---YIPNSIQMA-----EDTSIQLITGPNMSGKSTYMRQLAMTAVMAQL 624 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPA A++ I D +F+R+G+AD+L SG+STFMVEM+E + ++ AT S ++ DE+G Sbjct: 625 GSYVPAESAYLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANNAISHATKDSLILFDELG 684 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A + IEY+HE + L ATH+HELT L SL+ N + + + + Sbjct: 685 RGTATYDGMALAQSIIEYIHEHIGAKTLFATHYHELTSLESSLEHLVNVHVATLEQDGQV 744 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 FLHK+ PG AD SYGI V K+AGLP +++RA IL E + MR QT Sbjct: 745 TFLHKIEPGPADKSYGIHVAKIAGLPAELLARADKILAQLENQGTESPAPMR------QT 798 Query: 860 KESKNNLSKND----KLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +S D + ++ L++ M+P+ A+ L +K Sbjct: 799 SAVTEQMSLFDAPEEHPILAELAKLDVYNMTPMQAMNVLVELK 841 >gi|154493322|ref|ZP_02032642.1| hypothetical protein PARMER_02659 [Parabacteroides merdae ATCC 43184] gi|154086532|gb|EDN85577.1| hypothetical protein PARMER_02659 [Parabacteroides merdae ATCC 43184] Length = 870 Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust. Identities = 288/895 (32%), Positives = 476/895 (53%), Gaps = 56/895 (6%) Query: 29 MRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPV 88 M+QY +IK+ +PD+++ +R+GDFYE++ +DA+ + LGI TK+ G+ I M G P Sbjct: 1 MKQYFDIKAKHPDAILLFRVGDFYEMYGEDAVTGAEILGIVQTKKANGPGQTIEMAGFPH 60 Query: 89 HTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPT 148 H + Y+ KL++ G R+AIC+Q+E P KK LV+R + LVTPG D +L+ Sbjct: 61 HALDSYLPKLVRAGKRVAICDQLEDPKLTKK-----LVKRGITELVTPGVSINDNILNHK 115 Query: 149 DSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHAE 208 ++N+L A+ + IA++DISTG F + D + + P+E++ + Sbjct: 116 ENNFLAAIHFGKDVCGIAFLDISTGEFLTAEGTVDYVDKLLNNFSPKEVL-----VERGS 170 Query: 209 YKSLFETLGNVAVAQPNVF--------FDHSISESRIADYYNITTVDTFG-SFSQVEKTA 259 K E G P F F + R+ ++ + FG ++ A Sbjct: 171 RKRFEEAFG------PRFFIFELDDWVFTSEAANDRLLKHFETKNLKGFGVQHLKLGVVA 224 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 + A + Y+ +TQ + I R + + +D +LE++ T++ SLL +D Sbjct: 225 SGAILYYLDQTQHTHISHITSLSRIEEDRYVRLDKFTVRSLELVSTMN-EEGTSLLDVLD 283 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 +++ G R+ I PL D I+ R D + +F ++P + +++ L+ D+ R +S Sbjct: 284 KTVSPMGSRMLRRWILFPLKDVKPIHERQDVVEYFFRHPEVKELLEEKLEQIGDLERIIS 343 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 ++ +GR P+++ ++ +R+ I +D P R E+L + + + Sbjct: 344 KVAVGRVSPREVVQLKVALRAIEPIKEACTASDEPSLCRIG-EQLNACAL-IRDRIEKEI 401 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 ++D P+ GG + G +A LDE R++ K + +Q + + T I +LKI NN Sbjct: 402 NNDPPSLLNRGGVIATGVNAELDELRAIAYSGKDYLLKVQAREIDLTGISSLKIGFNNVF 461 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IEV ++ + + +I +QT+ N R+ T EL + E +I A L +E Sbjct: 462 GYYIEVRNAYKDKVPAE------WIRKQTLVNAERYITEELKEYEEKILGAEEKILSLEA 515 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 F L + E + + +I +D ++ A +A+ Y RP +++S +K GRH Sbjct: 516 RLFNELVLCLSEYIPPIQMNANLIGRLDCLLSFAKVAESNRYIRPDVNDSQVIDIKAGRH 575 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P++EK L +P+IAND L D ++ ++TGPNM GKS LRQ ALI +MAQ+ Sbjct: 576 PVIEKQLP--IGEPYIANDVYL----DDEKQQIIIITGPNMAGKSALLRQTALITLMAQI 629 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 G +VPA A IGIVDK+F+RVG++DN++ G STFMVEM E + ILN +++S V+ DE+G Sbjct: 630 GCFVPAECARIGIVDKIFTRVGASDNISVGESTFMVEMNEASDILNNMSSRSLVLFDELG 689 Query: 740 RGTATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 RGT+T DG+SIAWA +EY+HE R + L ATH+HEL ++ S KR N + V + N Sbjct: 690 RGTSTYDGISIAWAIVEYIHEHPNARAKTLFATHYHELNEMEASFKRIKNYNVSVKEVNN 749 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 +IFL K++PG ++HS+GI V K+AG+P +++ R+ +ILK E I Sbjct: 750 KVIFLRKLVPGGSEHSFGIHVAKMAGMPKSIVKRSNEILKQLETENRQEGIATEKRKGSI 809 Query: 858 QTKESKNNLSKNDKLFV--------------EKIKCLNLDEMSPLTALKTLYAVK 898 ++K K S D + ++IK L+++ ++PL AL L ++ Sbjct: 810 KSKPVKGIASSADGYQLSFFQLDDPVLSQVRDEIKNLDVNNLTPLEALNKLSEIR 864 >gi|293381577|ref|ZP_06627564.1| DNA mismatch repair protein MutS [Lactobacillus crispatus 214-1] gi|290921847|gb|EFD98862.1| DNA mismatch repair protein MutS [Lactobacillus crispatus 214-1] Length = 865 Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust. Identities = 273/821 (33%), Positives = 454/821 (55%), Gaps = 36/821 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 + +TPMM QY EIK PD+ +FYR+GDFYELF DDA+ ++ L +TLT R IP Sbjct: 3 EKTTPMMEQYYEIKKQYPDAFLFYRVGDFYELFEDDAVKGAQILELTLTHRSNRTKNPIP 62 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP + Y+ L++ G+++A+CEQ+E P +AK +V+R +++LVTPGT+ + Sbjct: 63 MAGVPHMAVDTYVNTLVEKGYKVALCEQLEDPKKAK-----GMVKRGIIQLVTPGTMMNE 117 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSE 201 DSNYL +V ++ + +A+ D+STG I+ + D + ++++ + RE++++ Sbjct: 118 GPNDAKDSNYLTSVITTKSGFGLAYSDLSTGEIYATHLKSFDAVSNELLSLRTREVVYNG 177 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 S +E F N+ +++P S + N+T + EK A Sbjct: 178 ---SLSEQNKDFMHKANITISRPTPIEGEHAEISYVEQ--NLT--------NGAEKEATR 224 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 + Y+ TQ + + + ++ L + ++NLE++ + +G + SL +D Sbjct: 225 QLVGYLLSTQKRSLAHLQIAKSYEVNQYLQMSHTVQNNLELVASAKTGKKMGSLFWVLDK 284 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGRL + +A PL + +IN R + + + LK D+ R R Sbjct: 285 THTAMGGRLLKQWLARPLLNMDEINHREEMVQALLDGYFTRENAVDALKGVYDLERLTGR 344 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + G +++ + +++ IL+ ++D + L +K+ L + + + ++S + Sbjct: 345 IAFGNVNARELLQLSRSLQAVPVILDALEQSD-SDILVDFAKKIDPL-KGVAEMITSTIV 402 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D P +GG ++ G D LD R + K+ +A ++ ++T I NLK+ +N G Sbjct: 403 KDPPVLTTEGGLIQGGVDPQLDRYRDAMNNGKKWLAEMEADERQKTGIDNLKVGYNKVFG 462 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+I+V++ + S + DR+ +QT++N R+ T EL + EN I A + +E + Sbjct: 463 YYIQVSNGNKSKV-----PLDRYTRKQTLTNAERYITPELKEHENLILEAQTRSTDLEYD 517 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID-NSTNFIVKDGRH 619 F L + + +L +A +D+ A +A++ NYCRP ++ + V +GRH Sbjct: 518 LFVKLREDVKKYIPALQKLGGQLAALDVYCGFATVAEQNNYCRPTFHADNQDINVTNGRH 577 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VEK + ++ +I ND + ++L+TGPNM GKST++RQ ALI IMAQ+ Sbjct: 578 PVVEKVM---TAGSYIPNDVKMD-----EGTNIYLITGPNMSGKSTYMRQMALIAIMAQV 629 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPA A + I D++F+R+G+AD+L SG+STFMVEM E L AT +S V+ DEIG Sbjct: 630 GSFVPADSADLPIFDQIFTRIGAADDLISGQSTFMVEMSEANEALQYATKRSLVLFDEIG 689 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A A ++YLH+ + L ATH+HELT + ++L N + ++ N + Sbjct: 690 RGTATYDGMALAGAIVKYLHDKVGAKALFATHYHELTVMDETLDHLKNIHVGATEENGKL 749 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 IFLHK++PG AD SYGI V +LAGLP V+ A +LK E Sbjct: 750 IFLHKILPGPADQSYGIHVAQLAGLPRNVLREATKLLKRLE 790 >gi|301795007|emb|CBW37471.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae INV104] gi|332198889|gb|EGJ12970.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47901] Length = 844 Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust. Identities = 294/883 (33%), Positives = 479/883 (54%), Gaps = 58/883 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEISLTSRNKNADNPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI+ G+++AI EQ+E P +A +V+R VV+++TPGT+ + L Sbjct: 67 VPYHSAQQYIDVLIEQGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVVDSSKL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEKEL 204 + +N+L+A+ R ++ +A++D+ TG F ++ L+ +I + RE++ +L Sbjct: 122 D-SQNNFLVAIDREGNQFGLAYMDLVTGDFYVTGLLDFTLVCGEIRNLKAREVVLG-YDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E + L + V + F D + + R+A VE+TA++ + Sbjct: 180 SEEEEQILSCQMNLVLSYEKESFEDLHLLDLRLA---------------TVEQTASSKLL 224 Query: 265 SYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 Y+ +TQM KP I Y +I+ L +D A +++L+++ SG ++ SL +D Sbjct: 225 QYVHRTQMRELNHLKPVIRY----EIKDFLQMDYATKASLDLVENARSGKKQGSLFWLLD 280 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL I PL D +I R + + F+ + + + LK D+ R S Sbjct: 281 ETKTAMGMRLLRSWIHRPLIDKERIVQRQEVVQVFLDHFFERSDLTDSLKGVYDIERLAS 340 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G+ PKD+ + + S I + + P L + +L +P+ LE +S+ + Sbjct: 341 RVSFGKTNPKDLLQLATTLSSVPRIRAILEGMEQPA-LAYLIAQLDAIPE-LESLISAAI 398 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + + P DGG +R G D +LD+ R + + IA ++ K E + I LKI +N Sbjct: 399 APEAPHVITDGGIIRTGFDETLDKYRCVLREGTSWIAEIEAKERENSGISTLKIDYNKKD 458 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+ VT+S + F + T+ N RF T EL +E + A + +E Sbjct: 459 GYYFHVTNSQLGNVPA------HFFRKATLKNSERFGTEELARIEGDMLEAREKSANLEY 512 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F + + + + L +Q IA +D+ +LA++A+ Q+ RP + + ++ GRH Sbjct: 513 EIFMRIREEVGKYIQRLQALAQGIATVDVLQSLAVVAETQHLIRPEFGDDSQIDIRKGRH 572 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 +VEK + Q+ +I N ++ + L+TGPNM GKST++RQ A+ +MAQ+ Sbjct: 573 AVVEKVMGAQT---YIPNTIQMA-----EDTSIQLITGPNMSGKSTYMRQLAMTAVMAQL 624 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPA AH+ I D +F+R+G+AD+L SG+STFMVEM+E + ++ AT S ++ DE+G Sbjct: 625 GSYVPAESAHLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELG 684 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A + IEY+HE + L ATH+HELT L SL+ N + + + + Sbjct: 685 RGTATYDGMALAQSIIEYIHEHIGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQV 744 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 FLHK+ PG AD SYGI V K+AGLP +++RA IL E N MR QT Sbjct: 745 TFLHKIEPGPADKSYGIHVAKIAGLPADLLARADKILTQLENQGTENPPPMR------QT 798 Query: 860 KESKNNLSKNDKL----FVEKIKCLNLDEMSPLTALKTLYAVK 898 +S D+ + ++ L++ M+P+ + L +K Sbjct: 799 SAVTEQISLFDRAEEHPILAELAKLDVYNMTPMQVMNVLVELK 841 >gi|227877609|ref|ZP_03995663.1| DNA mismatch repair protein MutS [Lactobacillus crispatus JV-V01] gi|227862803|gb|EEJ70268.1| DNA mismatch repair protein MutS [Lactobacillus crispatus JV-V01] Length = 865 Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust. Identities = 273/821 (33%), Positives = 454/821 (55%), Gaps = 36/821 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 + +TPMM QY EIK PD+ +FYR+GDFYELF DDA+ ++ L +TLT R IP Sbjct: 3 EKTTPMMEQYYEIKKQYPDAFLFYRVGDFYELFEDDAVKGAQILELTLTHRSNRTKNPIP 62 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP + Y+ L++ G+++A+CEQ+E P +AK +V+R +++LVTPGT+ + Sbjct: 63 MAGVPHMAVDTYVNTLVEKGYKVALCEQLEDPKKAK-----GMVKRGIIQLVTPGTMMNE 117 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSE 201 DSNYL +V ++ + +A+ D+STG I+ + D + ++++ + RE++++ Sbjct: 118 GPNDAKDSNYLTSVITTKSGFGLAYSDLSTGEIYATHLKSFDAVSNELLSLRTREVVYNG 177 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 S +E F N+ +++P S + N+T + EK A Sbjct: 178 ---SLSEQNKDFMHKANITISRPTPIEGEHAEISYVEQ--NLT--------NGAEKEATR 224 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 + Y+ TQ + + + ++ L + ++NLE++ + +G + SL +D Sbjct: 225 QLVGYLLSTQRRSLAHLQIAKSYEVNQYLQMSHTVQNNLELVASAKTGKKMGSLFWVLDK 284 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGRL + +A PL + +IN R + + + LK D+ R R Sbjct: 285 THTAMGGRLLKQWLARPLLNMDEINHREEMVQALLDGYFTRENAVDALKGVYDLERLTGR 344 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + G +++ + +++ IL+ ++D + L +K+ L + + + ++S + Sbjct: 345 IAFGNVNARELLQLSRSLQAVPVILDALEQSD-SDILVDFAKKIDPL-KGVAEMITSTIV 402 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D P +GG ++ G D LD R + K+ +A ++ ++T I NLK+ +N G Sbjct: 403 KDPPVLTTEGGLIQGGVDPQLDRYRDAMNNGKKWLAEMEADERQKTGIDNLKVGYNKVFG 462 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+I+V++ + S + DR+ +QT++N R+ T EL + EN I A + +E + Sbjct: 463 YYIQVSNGNKSKV-----PLDRYTRKQTLTNAERYITPELKEHENLILEAQTRSTDLEYD 517 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID-NSTNFIVKDGRH 619 F L + + +L +A +D+ A +A++ NYCRP ++ + V +GRH Sbjct: 518 LFVKLREDVKKYIPALQKLGGQLAALDVYCGFATVAEQNNYCRPTFHADNQDINVTNGRH 577 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VEK + ++ +I ND + ++L+TGPNM GKST++RQ ALI IMAQ+ Sbjct: 578 PVVEKVM---TAGSYIPNDVKMD-----EGTNIYLITGPNMSGKSTYMRQMALIAIMAQV 629 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPA A + I D++F+R+G+AD+L SG+STFMVEM E L AT +S V+ DEIG Sbjct: 630 GSFVPADSADLPIFDQIFTRIGAADDLISGQSTFMVEMSEANEALQYATKRSLVLFDEIG 689 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A A ++YLH+ + L ATH+HELT + ++L N + ++ N + Sbjct: 690 RGTATYDGMALAGAIVKYLHDKVGAKALFATHYHELTVMDETLDHLKNIHVGATEENGKL 749 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 IFLHK++PG AD SYGI V +LAGLP V+ A +LK E Sbjct: 750 IFLHKILPGPADQSYGIHVAQLAGLPRNVLREATKLLKRLE 790 >gi|256545158|ref|ZP_05472524.1| DNA mismatch repair protein MutS [Anaerococcus vaginalis ATCC 51170] gi|256399199|gb|EEU12810.1| DNA mismatch repair protein MutS [Anaerococcus vaginalis ATCC 51170] Length = 869 Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust. Identities = 302/896 (33%), Positives = 487/896 (54%), Gaps = 74/896 (8%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD--IPM 83 TPM+R Y+++K DSL+ YR+GDFYE FFDDA++ S+ L + LT GK G D PM Sbjct: 11 TPMLRHYVDVKKNFEDSLLLYRVGDFYEAFFDDAIIISKNLQLALT--GKECGHDKRAPM 68 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVP H + YI KL++ G +IA+C+Q+E P AK LV+R + R+++PGT+ + + Sbjct: 69 CGVPHHVIDTYINKLVQNGFKIALCDQVEDPKMAK-----GLVKRAITRVISPGTIIDLE 123 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTG---IFKISTSNH---DRLISDIMRIDPREI 197 L ++N+L+++ + + DISTG F+I + ++LI +I +I P EI Sbjct: 124 SLDKKENNFLLSIYENKYGIGACFSDISTGKLMAFEIRNNQSISANKLIDEIEKISPSEI 183 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS--QV 255 I + S+ K + + L N D ES + Y V+ F ++ Sbjct: 184 IIN----SNFSNKKVLKYLNLNKEILINKIDDTKDYESLSKNVYKNLGVENFKKIENMRI 239 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSL 314 A + + YI I E DI S + +D+ R NLE+ + ++ SL Sbjct: 240 SLIAISNLLDYIYSYHKEKLAHINDIEILDIASYMQLDANTRRNLELHSNIDKKGKDNSL 299 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 K ID + T G RL + PL + KI+ RLD + FF NP L N + L D+ Sbjct: 300 FKLIDKADTVMGSRLLNMWLERPLIEKEKIDKRLDLVEFFFLNPDLSNKVSYFLDDIFDL 359 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--------ELRGAVEKLKK 426 R + ++ R +D ++ IR+ +PE + + + K Sbjct: 360 ERIIGKISYQRANARDFISLKTSIRN------------IPEFKKFLAGLDNKDIISFSKN 407 Query: 427 LPQ--SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAE 484 LP ++ L + +D P +G ++DG + LD+ + ++ + + + + E Sbjct: 408 LPDVSNIYDILDKSIVEDPPVLITEGEIIKDGFNDDLDKLKKDSLSAENDLIAYENEQKE 467 Query: 485 ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLE 544 +T I LKI +N N GY IE+T S+ ++ D +I +QT+ N R+TT L +L Sbjct: 468 KTGINKLKINYNKNNGYSIEITKSNLDLVP------DTYIRKQTLINRERYTTERLEELS 521 Query: 545 NRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP 604 N I +++ +E E F + I++ ++ L S++I+IID ALA LA+E NYC+P Sbjct: 522 NLILGSSDRINNLEYEIFCQIREFILDNTKKLQYLSKLISIIDSINALAKLARENNYCKP 581 Query: 605 IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 I +K+GRHP++EK LK+ FI+ND D+ N+ + ++TGPNM GKS Sbjct: 582 EITTDNIIKIKNGRHPVIEKKLKENE---FISNDTDIGESNNL----IQIITGPNMAGKS 634 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 T++RQ A+I+I+AQMGS+VP A I I DK+F+R+G++DN++ G STFM+EM E ++IL Sbjct: 635 TYMRQMAIIIILAQMGSFVPCEKASICICDKVFTRIGASDNISKGESTFMLEMNEVSNIL 694 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR 784 +T++SF+ILDE+GRGT++ DGLSIA + ++YL + + + + ATHFHELT L L Sbjct: 695 KNSTDKSFIILDEVGRGTSSDDGLSIAMSLVDYLSKKKKAKTVFATHFHELTVLENKLDN 754 Query: 785 FHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA---YDILKTFEK 841 N + + + N+ ++FL K+ G +D SYGI+V +++GLP +I A + L ++ Sbjct: 755 VINLKIDILEENDSLVFLRKISRGKSDRSYGIEVARMSGLPLDLIENAKIFMNKLDESDE 814 Query: 842 LYHHNQKDMRLYYPE---IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 ++ N K ++ + I+ E KN K+ +N++E++PL A+ L Sbjct: 815 IFKDNNKIIKSSIDDLNRIKIDELKN-----------KVNLININELTPLEAINIL 859 >gi|212696181|ref|ZP_03304309.1| hypothetical protein ANHYDRO_00717 [Anaerococcus hydrogenalis DSM 7454] gi|212676810|gb|EEB36417.1| hypothetical protein ANHYDRO_00717 [Anaerococcus hydrogenalis DSM 7454] Length = 869 Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust. Identities = 315/919 (34%), Positives = 507/919 (55%), Gaps = 100/919 (10%) Query: 16 IDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK 75 +D E + TPM+R Y+++K+ DSL+ YR+GDFYE FF DA+ S+ L + LT GK Sbjct: 1 MDQEFKYEKLTPMLRHYVDVKNDFKDSLLLYRVGDFYEAFFTDAITISKTLQLALT--GK 58 Query: 76 HLGKD--IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRL 133 G D PMCGVP H + YI KL+K G+++A+C+Q+E P +AK LV+R + R+ Sbjct: 59 ECGHDKRAPMCGVPHHVIDTYINKLVKNGYKVALCDQVEDPKKAK-----GLVKRAITRV 113 Query: 134 VTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTG---IFKIST---SNHDRLIS 187 ++PGT+ + + L D+N+L+++ + + DISTG F+I + S+ ++LI+ Sbjct: 114 ISPGTVVDLESLDKKDNNFLLSIFESKFGIGACFADISTGKLMTFEIKSDKDSSANKLIN 173 Query: 188 DIMRIDPREII----FSEKELSHAEYKSLF-ETLGNVAVAQPNVFFDHSISESRIADYYN 242 +I +I P EII F+ K++ +Y L ETL N I E+ D Y Sbjct: 174 EIEKISPSEIIINSNFTNKKV--LDYLDLNKETLIN------------KIDET---DNYK 216 Query: 243 ITTVDTFG-----SFSQVEK-----TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFI 292 + + F +F +V+ A + + YI + N + E +I S + + Sbjct: 217 SLSKNVFNHLGGRNFEKVKNLRISLIAISNLLDYIYRYHKNNLAHLNEIEILEISSYMQL 276 Query: 293 DSAARSNLEILRTLSG-SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSI 351 D+ R NLE+ + +E SL K ID + T G RL E + PL D KI RLD + Sbjct: 277 DANTRRNLELHTNIDKKGKENSLFKLIDKADTVMGSRLLNEWLERPLIDKEKIEKRLDLV 336 Query: 352 NFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN 411 +F N + + I L D+ R + ++ R +D ++ +R Sbjct: 337 EYFYLNTDISHKITFYLDDIYDLERIIGKISYQRANARDFISLKTSLR------------ 384 Query: 412 DLPEELRGAVEKL---------KKLPQ--SLEKTLSSMLSDDLPTFKRDGGFLRDGADAS 460 ++PE + + KL K +P ++ + L + +D P +GG +++G + Sbjct: 385 NIPE-FKKYLSKLDNKDIVSFSKNIPDVSNIYEILDKSIINDPPIVITEGGIIKEGFNDD 443 Query: 461 LDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESK 520 LD+ + +++ + + + E+T I LKI +N N GY IEVT ++ ++ Sbjct: 444 LDKLKESSISAEKDLINYEKDEKEKTGISKLKINYNKNNGYSIEVTKANTHLVP------ 497 Query: 521 DRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNAS 580 D +I +QT+ N R+TT +L +L N I +++ +E + F + I++ ++ L S Sbjct: 498 DYYIRKQTLKNQERYTTEKLEELSNLILGSSDKINELEYKIFGEIREFILDNTKKLQYLS 557 Query: 581 QVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCD 640 ++I+IID +LA LA E NY +PII N +KDGRHP++EK LK+ FIAND D Sbjct: 558 KLISIIDSLNSLAKLAIENNYKKPIITNDNTIKIKDGRHPVIEKNLKENE---FIANDTD 614 Query: 641 LSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRV 700 + N+ + ++TGPNM GKST++RQ A+I+I+AQMGS+VP A I + DK+F+R+ Sbjct: 615 IGEDNNL----IQIITGPNMAGKSTYMRQMAIIIILAQMGSFVPCQSASISVCDKVFTRI 670 Query: 701 GSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHE 760 G++DN++ G STFM+EM E ++IL +T SF+ILDE+GRGT++ DGLSIA + ++YL + Sbjct: 671 GASDNISKGESTFMLEMNEVSNILKNSTENSFIILDEVGRGTSSDDGLSIAMSLVDYLSK 730 Query: 761 TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGK 820 R + + ATHFHELT L L N + + + + ++FL K+ G D SYGI+V K Sbjct: 731 KKRAKTVFATHFHELTILENKLDNVVNLKIDILEEDNNLVFLRKISKGKTDRSYGIEVAK 790 Query: 821 LAGLPNTVISRAYDILKTF-EKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIK- 878 L+GLP+ +I A K F +KL +D R++ + T N + K+ V+K+K Sbjct: 791 LSGLPDELIENA----KIFMDKL----DEDDRVF--KNSTNIVNNTIDDIYKIKVDKLKE 840 Query: 879 ---CLNLDEMSPLTALKTL 894 +N++E++PL A+ L Sbjct: 841 NIDSININELTPLEAINVL 859 >gi|261878911|ref|ZP_06005338.1| DNA mismatch repair protein MutS [Prevotella bergensis DSM 17361] gi|270334493|gb|EFA45279.1| DNA mismatch repair protein MutS [Prevotella bergensis DSM 17361] Length = 888 Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust. Identities = 280/828 (33%), Positives = 467/828 (56%), Gaps = 32/828 (3%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TPMM+Q+ +K+ +PD+++ +R GDFYE + DDA AS LGITLTKR G + G DI M Sbjct: 9 TPMMKQFFSMKAKHPDAVLLFRCGDFYETYGDDAETASGILGITLTKRNNGGNSG-DIAM 67 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLE--AKKRGNKSL------VRRNVVRLVT 135 G P H + Y+ KLI+ G R+AIC+Q+E P + A +G K L V+R + LVT Sbjct: 68 AGFPHHALDTYLPKLIRAGKRVAICDQLEDPKKKRAAIKGKKGLSEMDKMVKRGITELVT 127 Query: 136 PGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPR 195 PG D +L+ ++N+L AV ++ ++++DISTG F ++D + + P+ Sbjct: 128 PGVAMSDNVLNYKENNFLSAVHFGKSACGVSFLDISTGEFLTGQGSYDYVEKLLGSFSPK 187 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQV 255 E+++ +++ F T + VF + S + ++ ++ T+ FG Sbjct: 188 EVLYDRDR--KKDFERYFGTRHCIFELDDWVFTEQS-ARQKLLKHFGTKTLKGFGVEHLR 244 Query: 256 EKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSL 314 E AA AI Y++ TQ + I +R + + +D +LE+++ + +SL Sbjct: 245 EGIIAAGAIMQYLEITQHTSINHITALQRIEEDKYVRMDKFTIRSLELIQPMQ-EDGRSL 303 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D ++T GGRL + PL D +I+ R D + +F + P + + L D+ Sbjct: 304 LNILDSTVTPMGGRLLRRWMVFPLKDVARIHDRQDIVEYFFKQPDFRQVVDEQLHRIGDL 363 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R +S++ +GR P+++ +++ + + I + ++ L+ E+L L +SL Sbjct: 364 ERIISKVAVGRVSPREVVQLKNAL-TAIQPIKSACQSADNVSLKRLGEQLN-LCESLRDR 421 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 ++ ++ D P G + DG + LD+ RS+ + K + +Q + A+ T I +LK+ Sbjct: 422 IAHEINPDPPLLINKGNVMADGCNEELDQLRSISRKGKNFLIEIQQREADSTGISSLKVG 481 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 NN GY++EV ++ KD + + +I +QT++ R+ T EL + E +I A Sbjct: 482 FNNVFGYYLEVRNTF-----KD-KVPETWIRKQTLAQAERYITPELKEYEEKILGADEKI 535 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E+ F L A+ + + + +IA ID ++ A +++ Y RP +D+S + Sbjct: 536 IELEMRLFNELILAMQDFIPQIQINANIIAHIDCLLSFAKVSETNLYVRPEVDDSDILDI 595 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 + GRHP++E + + ++ ND L D ++ ++TGPNM GKS LRQ ALIV Sbjct: 596 QQGRHPVIETQMPL--GEHYVPNDVYL----DTAKQQVMIITGPNMAGKSALLRQTALIV 649 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++AQ+G +VPA A +G+VDK+F+RVG++DNL+ G STFMVEM E ++ILN T S V+ Sbjct: 650 LLAQIGCFVPAERARVGLVDKIFTRVGASDNLSQGESTFMVEMTEASNILNNVTPHSLVL 709 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQV 792 DE+GRGT+T DG+SIAWA +EYLHE + R L ATH+HEL ++ K R N + V Sbjct: 710 FDELGRGTSTYDGISIAWAIVEYLHEQPKAQARTLFATHYHELNEMEKHFARIKNFNVSV 769 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + + +IFL K++PG ++HS+GI V ++AG+P +++ R+ ILK E Sbjct: 770 KEVDGKVIFLRKLMPGGSEHSFGIHVAEIAGMPPSIVRRSNTILKQLE 817 >gi|292669799|ref|ZP_06603225.1| DNA mismatch repair protein MutS [Selenomonas noxia ATCC 43541] gi|292648596|gb|EFF66568.1| DNA mismatch repair protein MutS [Selenomonas noxia ATCC 43541] Length = 866 Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust. Identities = 309/904 (34%), Positives = 483/904 (53%), Gaps = 75/904 (8%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 + ++ TPMM+QY+ K +P L+F+R+GDFYE+FF+DA +A++ LG+TLT R L K Sbjct: 2 DAQNVTPMMQQYLSAKQAHPGELLFFRLGDFYEMFFEDAKIAAKELGLTLTSRSGDLDKS 61 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 PMCGVP H A+ YI +L+ G ++AI EQI P K L R VV+++TPGT Sbjct: 62 -PMCGVPYHAADSYIARLVAKGFKVAIAEQIGDP------KAKGLTHREVVKVITPGTTL 114 Query: 141 EDQLLSPTDSNYLMAVAR-IRTEWAIAWIDISTG-IFKISTSNHD-----------RLIS 187 D++L + Y+ + ++ +A DISTG F + + + R+ + Sbjct: 115 SDEVLRDASNIYIALLHESAPRKFVLAGADISTGEAFYAAYAGENAAQQIFDELYRRMTA 174 Query: 188 DIMRI-------DPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADY 240 +++ D RE F+ + L H S+ T +AQ H +E AD Sbjct: 175 ELLMTWGFSLADDVRE--FAAQRLPHCAISSVEATADTELLAQ------HFPAEEIPAD- 225 Query: 241 YNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNL 300 G +TA AA + Y+ T M + I D T+ +D+ NL Sbjct: 226 ---------GG----AQTAIAALLRYLHDTVMADLSQINRLAFLDAAGTMQLDTYTLRNL 272 Query: 301 EILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPI 359 EI R+L GS++ +L +D++ T G RL + PL +I+ RLD++ + P Sbjct: 273 EITRSLRDGSKKNTLFDVLDFTRTPMGTRLLKSWLEHPLLVPHRIDARLDAVAELAEKPS 332 Query: 360 LINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFL---KNDLPEE 416 L + +++ L+S D R L+R++ +D+ +R + + + ++ L ++ L Sbjct: 333 LRSGLREALRSIYDFERLLTRIETLAANARDLVALRVSL-AALPMVRTALGTAESRLLTH 391 Query: 417 LRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIA 476 GA+ +L LE+ + D+ R+GG +R+G DA+LD+ SK ++ Sbjct: 392 FAGAILTFDELRDVLERAIV----DEPGISVREGGIIREGYDAALDDLHRFSHDSKALLQ 447 Query: 477 SLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFT 536 ++ + E T IK LKI +N GY+IEV S + D +I +QT++N RF Sbjct: 448 EMEERERERTGIKTLKIGYNKVFGYYIEVRHSGRDQVPAD------YIRKQTLANTERFI 501 Query: 537 TLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILA 596 T EL E +I A +E F L + EQ + N ++VIA +D +LA A Sbjct: 502 TEELKAFEAKILGAQEKITALEYHLFTELRERVREQLVPIQNVARVIARVDALQSLAEAA 561 Query: 597 KEQNYCRPIIDNSTN--FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWL 654 Y RP I + + I++DGRHP+VE+ L+++ F+ ND LS + L Sbjct: 562 AAYRYVRPKICTAADGEIIIRDGRHPLVERILQREI---FVPNDTHLS----HGGAETML 614 Query: 655 LTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFM 714 +TGPNM GKST++RQ AL+ +MAQ+GS+VPA A I VD++F+R+G++D+L SG+STFM Sbjct: 615 ITGPNMAGKSTYMRQVALLTLMAQVGSFVPARSAQIAPVDRIFTRIGASDDLVSGQSTFM 674 Query: 715 VEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHE 774 VEM E A IL +AT S VILDEIGRGT+T DG+SIA A +E++ + L ATH+HE Sbjct: 675 VEMNEVAQILREATRDSLVILDEIGRGTSTFDGMSIARAVVEFIDTRIHAKTLFATHYHE 734 Query: 775 LTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYD 834 LT+++ +R N + V + + + FL ++IPG AD SYGI V +LAGLP V RA + Sbjct: 735 LTEMAG--ERIRNYCIAVREKGKRVAFLRRIIPGAADKSYGIHVARLAGLPPRVTERAEE 792 Query: 835 ILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 IL E+ + ++++ S +++++ L++ M+PL AL TL Sbjct: 793 ILHALEQKAAATAAAEEETAARQEPEQTEGMASLFADGTLDELRALDIMTMTPLEALNTL 852 Query: 895 YAVK 898 Y ++ Sbjct: 853 YRLQ 856 >gi|294664088|ref|ZP_06729486.1| DNA mismatch repair protein MutS [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292606140|gb|EFF49393.1| DNA mismatch repair protein MutS [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 851 Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust. Identities = 293/885 (33%), Positives = 476/885 (53%), Gaps = 50/885 (5%) Query: 29 MRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPV 88 M+Q+ KS PD L+F+RMGDFYELF+DDA A+R L ITLT+RG G IPM GVPV Sbjct: 1 MKQFFAAKSDYPDLLLFFRMGDFYELFYDDARKAARLLDITLTQRGSSGGAPIPMAGVPV 60 Query: 89 HTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPT 148 H Y+ +L+ +G +AICEQI P AK LV R VVR+VTPGT+T++ LL Sbjct: 61 HAYEGYLARLVALGESVAICEQIGDPALAK-----GLVERKVVRIVTPGTVTDEALLDER 115 Query: 149 DSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEKELSHA 207 LMA++R + + +AW D++ G F ++ + D L ++I R++P E++ +++ Sbjct: 116 RDTLLMAISRSKHGYGLAWADLAGGRFLVNEVDSVDALEAEIARLEPAELLVPDED---- 171 Query: 208 EYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAIS 265 + G + V + P FD ++ ++ + + FG AA A + Sbjct: 172 NWPDFLR--GRIGVRRRPPWLFDADSGRRQLLAFFKLHDLSGFGIDDKPCATAAAGALLG 229 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y+++TQ P + E + +++A R +LE+ + G +LL +D ++T Sbjct: 230 YVEETQKQRLPHLTSIAMEVASEAISMNAATRRHLELDTRVDGDTRNTLLGVLDSTVTPM 289 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 GGRL + PL + R ++ I + +++ ++ D+ R L+R+ + Sbjct: 290 GGRLLRRWLHRPLRLRDVLVQRHHAVGALIDAAADAD-LREAFRALGDLERILTRVALRS 348 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK------TLSSML 439 P+D + +RDG+ + + D P +L+ L L + L S + Sbjct: 349 ARPRDFSTLRDGLALLPKVRAILAPLDSP--------RLQTLHAELGEHDATAHLLISAV 400 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 ++ P DGG + G DA LDE R L + + + L+ + + I LK+ +N Sbjct: 401 AETPPLKLSDGGVIATGYDADLDELRRLSTNADQFLIDLEQRERASSGIATLKVGYNRVH 460 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IE++ A ++ + RQT++N R+ T EL E+++ +A +L E Sbjct: 461 GYYIEISKGQAE------KAPLHYSRRQTLTNAERYITEELKSFEDKVLSARERSLSREK 514 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 +E L +A+ + E L + ++ +D+ A A+ ++ +P +D++ ++ GRH Sbjct: 515 LLYEGLLDALGTELEGLKRCAGALSELDVLAGFAERAQALDWSQPELDSTPCLRIERGRH 574 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE +Q PF ND DL D+ ++ ++TGPNMGGKST++RQNALIV++A + Sbjct: 575 PVVEAVREQ----PFEPNDLDLH--GDR---RMLVITGPNMGGKSTYMRQNALIVLLAHI 625 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPAS A IG +D++ +R+G+ D+LA G+STFMVEM ET+ IL+ AT QS V++DEIG Sbjct: 626 GSYVPASRAVIGPIDRILTRIGAGDDLARGQSTFMVEMAETSYILHHATPQSLVLMDEIG 685 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS-----LKRFHNATLQVSD 794 RGT+T DGL++A A +L +TNRC L ATH+ ELT L+ + N L + Sbjct: 686 RGTSTYDGLALADAVARHLAQTNRCYTLFATHYFELTALADASHAGGASGIANVHLDAVE 745 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 E ++F+H V G A+ S+G+QV LAGLP +++A L E+ + ++ Sbjct: 746 HGERLVFMHAVKDGPANRSFGLQVAALAGLPKAAVTQARRRLAELEQRGGESHS-AQMAP 804 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + + + E ++ L+ DE++P AL+ LY +KA Sbjct: 805 TALDAPQQFGLFTAPSSAAQEALQALDPDELTPKQALEALYRLKA 849 >gi|270291960|ref|ZP_06198175.1| DNA mismatch repair protein HexA [Streptococcus sp. M143] gi|270279488|gb|EFA25330.1| DNA mismatch repair protein HexA [Streptococcus sp. M143] Length = 857 Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust. Identities = 296/883 (33%), Positives = 477/883 (54%), Gaps = 58/883 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I+LT R K+ IPM G Sbjct: 20 SPGMQQYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEISLTSRNKNAENPIPMAG 79 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI+ G+++AI EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 80 VPYHSAQQYIDVLIEQGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSSK 133 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEKEL 204 + +N+L+A+ R ++ +A++D+ TG F ++ L+ +I + RE++ +L Sbjct: 134 PDSQNNFLVALDRDGNQFGLAYMDLVTGDFYVTGLLDFTLVCGEIRNLKAREVVLG-YDL 192 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E + L + V + F D + +SR+A VE+ AA+ + Sbjct: 193 SEEEEQILSRQMNLVLSYEKEGFEDVHLLDSRLA---------------AVEQAAASKLL 237 Query: 265 SYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 Y+ +TQM KP I Y +I+ L +D A +++L+++ SG ++ SL +D Sbjct: 238 QYVHRTQMRELNHLKPVIRY----EIKDFLQMDYATKASLDLVENARSGKKQGSLFWLLD 293 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL I PL D +I R + + F+ + + + LK D+ R S Sbjct: 294 ETKTAMGMRLLRSWIHRPLIDKERIVQRQEVVQVFLDHFFERSDLTDSLKGVYDIERLAS 353 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G+ PKD+ + + S I + + P L + +L +P+ LE +S+ + Sbjct: 354 RVSFGKTNPKDLLQLATTLSSVPRIRAILEGMEQPA-LAYLIAQLDAIPE-LESLISAAI 411 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + + P +GG +R G D +LD+ R + + IA ++ K E + I LKI +N Sbjct: 412 APEAPHVITEGGIIRTGFDETLDKYRRVLREGTSWIAEIEAKERENSGISTLKIDYNKKD 471 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+ VT+S + F + T+ N RF T EL +E + A + +E Sbjct: 472 GYYFHVTNSQLGNVPA------HFFRKATLKNSERFGTEELARIEGDMLEAREKSANLEY 525 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F + + + + L +Q IA +D+ +LA++A+ Q+ RP +++ ++ GRH Sbjct: 526 EIFMRIREEVSKYIQRLQALAQGIATVDVLQSLAVVAETQHLIRPEFGDNSQIDIQKGRH 585 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 +VEK + QS +I N +S + L+TGPNM GKST++RQ A+ +MAQ+ Sbjct: 586 AVVEKVMGAQS---YIPNSIQMS-----EDTSIQLITGPNMSGKSTYMRQLAMTAVMAQL 637 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPA AH+ I D +F+R+G+AD+L SG+STFMVEM+E + ++ AT S ++ DE+G Sbjct: 638 GSYVPAESAHLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELG 697 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A + IEY+HE + L ATH+HELT L SL+ N + + + Sbjct: 698 RGTATYDGMALAQSIIEYIHEHIGAKTLFATHYHELTSLESSLEHLVNVHVATLEQGGHV 757 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 FLHK+ PG AD SYGI V K+AGLP +++RA IL E + MR QT Sbjct: 758 TFLHKIEPGPADKSYGIHVAKIAGLPGELLARADKILTQLESQGGESPAPMR------QT 811 Query: 860 KESKNNLSKND----KLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +S D + ++ L++ M+P+ A+ L K Sbjct: 812 SAVTEQISLFDTPAEHPILAELAQLDVYNMTPMQAMNVLVEFK 854 >gi|284800223|ref|ZP_06390618.1| DNA mismatch repair protein MutS [Neisseria subflava NJ9703] gi|284795644|gb|EFC50991.1| DNA mismatch repair protein MutS [Neisseria subflava NJ9703] Length = 856 Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust. Identities = 305/885 (34%), Positives = 464/885 (52%), Gaps = 50/885 (5%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY+ IKS + D LVFYRMGDFYELF DDA+ A++ L ITLT RG+ G I M GVP Sbjct: 1 MMQQYLAIKSQHADKLVFYRMGDFYELFLDDAVEAAKLLDITLTTRGQMDGVPIKMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A Y+ +L+K+G +A+CEQ+ + K V R VVR+VTPGTLT+ L Sbjct: 61 FHAAEQYLARLVKMGKSVAVCEQV-----GEVGAGKGPVERKVVRIVTPGTLTDAAFLED 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHA 207 ++N + AV + AIAW + +G FK + D+L ++ R+ EI+ E + Sbjct: 116 KETNRIAAVNADKKHVAIAWASLQSGEFKTKLTTADKLADELARLQAAEILLPEGKSLPN 175 Query: 208 EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG---SFSQVEKTAAAAAI 264 +++ + + Q F + +Y+ + FG + AA A + Sbjct: 176 GFQATSANITRLNSWQ----FAADAGAKLLTEYFGCQDLHGFGLDGKEHEAAVGAAGALL 231 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 +YI+ TQ + + E + +D+A R NLEI +TLSG + +L +D T Sbjct: 232 NYIRLTQNLMPQHLDGISLETDSQYIGMDAATRRNLEITQTLSGKKSPTLFSILDGCATH 291 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 G RL A + PL I R +++ +Q LK+ D+ R +R+ +G Sbjct: 292 MGSRLLALWLHHPLRSRAHIRARQEAVAALGSQ---YETLQGRLKNIADIERIAARIAVG 348 Query: 385 RGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL-PQSL--EKTLSSMLSD 441 P+D+A +RD + + I +L E +E LK + P++L +TL + + Sbjct: 349 NARPRDLAALRDSLFALSEI-------ELSAEGSSLLETLKAVFPETLPVAETLKAAVMP 401 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + + +DGG + G A LDE R +++ + L+ + E T + LK++ N G+ Sbjct: 402 EPAVWLKDGGVINQGYCAELDELRHIQNHGDEFLLDLEARERERTGLSTLKVEFNRVHGF 461 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IE++ A D + RQT+ N RF T EL E+++ A AL +E Sbjct: 462 YIELSKVQAEQAPAD------YQRRQTLKNAERFITPELKTFEDKVLTAQEQALALEKRL 515 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 FE L I L A++ A +D+ A A E+ + P + +++GRHP+ Sbjct: 516 FEALLKDIQTTLPQLQKAAKAAAALDVLSTFAATAAERGFVCPEFADYPVIHIENGRHPV 575 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE+ ++ F AN L + +L LLTGPNMGGKST++RQ A IV+MA GS Sbjct: 576 VEQQVRH-----FTANHTRLD-----HKHRLMLLTGPNMGGKSTYMRQVAHIVLMAHTGS 625 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA A IG +D++F+R+G++D+LAS RSTFMVEM ETA IL+ AT QS V++DE+GRG Sbjct: 626 FVPADSAQIGPIDQIFTRIGASDDLASNRSTFMVEMSETAYILHHATEQSLVLMDEVGRG 685 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 T+T DGL++A A E+L + N+ L ATH+ ELT L ++ N L + + I+F Sbjct: 686 TSTFDGLALAHAIAEHLLQKNKSFSLFATHYFELTRLPEAHATAVNMHLSALEQGQDIVF 745 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP---EIQ 858 LH + PG A SYGI V KLAGLPN + A L E N+ + ++ E + Sbjct: 746 LHHIEPGPASKSYGIAVAKLAGLPNRALKAAQKHLDELEAQAAANRPQLDIFSAMPSENR 805 Query: 859 TKESKNNL-----SKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E + + ++ D+L E + + D ++P AL LY +K Sbjct: 806 ADEEEQEIEPVCHAQTDEL-AEALAQIQPDNLTPREALDALYRLK 849 >gi|15605835|ref|NP_213212.1| DNA mismatch repair protein [Aquifex aeolicus VF5] gi|3914079|sp|O66652|MUTS_AQUAE RecName: Full=DNA mismatch repair protein mutS gi|2983001|gb|AAC06613.1| DNA mismatch repair protein MutS [Aquifex aeolicus VF5] Length = 859 Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust. Identities = 284/823 (34%), Positives = 470/823 (57%), Gaps = 39/823 (4%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 +E++ K TPM+ QY K+ PD L+ +R+GDFYELF++DA + S+ LG+ LT R Sbjct: 1 MEKSEKELTPMLSQYHYFKNQYPDCLLLFRLGDFYELFYEDAYIGSKELGLVLTSRPAGK 60 Query: 78 GKD-IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTP 136 GK+ IPMCGVP H+AN YI KL+ G+++AICEQ+E P +AK +V+R VVR++TP Sbjct: 61 GKERIPMCGVPYHSANSYIAKLVNKGYKVAICEQVEDPSKAK-----GIVKREVVRVITP 115 Query: 137 GTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPRE 196 GT E D+ L ++ + + + +++++ G F + + L+ + +++ +E Sbjct: 116 GTFFE------RDTGGLASLYKKGNHYYVGYLNLAVGEFLGAKVKIEELLDLLSKLNIKE 169 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 I+ + E E E + V V++ F SE + D+ + ++ FG Sbjct: 170 ILVKKGEKLPEE----LEKVLKVYVSELEEEFFEEGSEEILKDF-GVLSLQAFGFEEDTY 224 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 A Y K TQ P I P+ + + +D A LEIL +L G ++ SL K Sbjct: 225 SLPLGAVYKYAKTTQKGYTPLIPRPKPYRDEGFVRLDIKAIKGLEILESLEGRKDISLFK 284 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 ID ++TG G R R+ SP KI + + +N + I++IL+ D+ R Sbjct: 285 VIDRTLTGMGRRRLKFRLLSPFRSREKIERIQEGVQELKENREALLKIRQILEGMADLER 344 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKT 434 +S++ P+++ +++ ++ + L L+ P +E+ E KK+ +EKT Sbjct: 345 LVSKISSNMATPRELVYLKNSLKKVEELRLLLLELKAPIFKEILQNFEDTKKIINDIEKT 404 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L +D P ++GG +R+G +A LDE R +RD ++ + + K +ET I++LKI Sbjct: 405 LV----EDPPLHVKEGGLIREGVNAYLDELRFIRDNAETYLREYEKKLRQETGIQSLKIG 460 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N +GY+IEVT + + F RQT+SN RFTT EL LE +I +A Sbjct: 461 YNKVMGYYIEVTKPNLKYVP------SYFRRRQTLSNSERFTTEELQRLEEKILSAQTRI 514 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 +E E ++ L ++++ + + N + +A +D +LA +A E+++ +P I I+ Sbjct: 515 NDLEYELYKELRERVVKELDKVGNNASAVAEVDFIQSLAQIAYEKDWAKPQIHEGYELII 574 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 ++GRHP++E+ ++ ++ ND L D++S + ++TGPNM GKS+++RQ ++ Sbjct: 575 EEGRHPVIEEFVEN-----YVPNDTKL----DRDSF-IHVITGPNMAGKSSYIRQVGVLT 624 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 +++ +GS++PA A I +VD LF+R+GS D LA G STFM EM+E ++ILN AT +S VI Sbjct: 625 LLSHIGSFIPARRAKIPVVDALFTRIGSGDVLALGVSTFMNEMLEVSNILNNATEKSLVI 684 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDE+GRGT+T DG++I+ A ++Y+ E + + LLATHF E+T+L ++ N ++V Sbjct: 685 LDEVGRGTSTYDGIAISKAIVKYISEKLKAKTLLATHFLEITELEGKIEGVKNYHMEVEK 744 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILK 837 + EGI FL+ + G A+ S+GI+V KLAGLP V+ A IL+ Sbjct: 745 TPEGIRFLYILKEGKAEGSFGIEVAKLAGLPEEVVEEARKILR 787 >gi|254425421|ref|ZP_05039139.1| DNA mismatch repair protein MutS [Synechococcus sp. PCC 7335] gi|196192910|gb|EDX87874.1| DNA mismatch repair protein MutS [Synechococcus sp. PCC 7335] Length = 961 Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust. Identities = 294/841 (34%), Positives = 450/841 (53%), Gaps = 40/841 (4%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLG 78 N + TPMMR Y +IK +P +L+ YR+GDFYE FF DA+ +R L + LT + GK +G Sbjct: 53 NREDMTPMMRHYAQIKDQHPYALLMYRVGDFYETFFQDAITIARELELVLTSKDAGKAIG 112 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + +P+ G+P H Y +L+ G+ IAIC+Q+E P +A+ LV+R V R++TPGT Sbjct: 113 R-VPLSGIPHHALERYCVQLVSKGYAIAICDQVEDPAQAQ-----GLVKREVTRVITPGT 166 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIF-KISTSNHDRLISDIMRIDPREI 197 + E+ +L+ +N+L AV W +A+ D+STG F ++ D+L ++MR+ P E+ Sbjct: 167 VIEEGMLTARQNNFLAAVVIAGEHWGLAYADVSTGEFLTTQATDLDQLAQELMRLQPAEV 226 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVF---------FDHSISESRIADYYNITTVDT 248 + E + P F F + ++ R+ + + +++ Sbjct: 227 LVPSNAPDLGGLLRPGEQSNQLPKCLPTQFCYTLRSQTPFTKAEAQQRLLESLKLRSLEG 286 Query: 249 FG-SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL- 306 G + + AA + Y++ TQ + + + + L ID + NLEI T Sbjct: 287 VGCAHLPLATRAAGGLLEYLEDTQKTSLAPLQMLKAYALSEYLIIDHQTQRNLEITHTCR 346 Query: 307 SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK 366 G+ SLL +D ++T GGR + PL + I R D+I + L +Q+ Sbjct: 347 DGTYHGSLLWALDRTVTAMGGRALRRWLLQPLLNVEGIKARQDTIEELVNQGSLRQQLQQ 406 Query: 367 ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK 426 +LK D+ R R G +D+ + D ++ L P + KL+ Sbjct: 407 LLKQIYDLERLAGRAGSGTANGRDLVAMADSFAKLPDLAGLMSHATSP-----YLVKLQF 461 Query: 427 LPQSLEKT---LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 +P LE+ L S L + P + +G +RDG + LD+ R ++ IA+L+ Sbjct: 462 VPPELEELGSLLRSHLVETPPLYLTEGNLIRDGVNPQLDQLRQQITTDQQWIANLETTER 521 Query: 484 EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDL 543 T I NLK+ + GY+I ++ S K DL + + +QT++N R+ T EL D Sbjct: 522 TRTGISNLKVGYTKAFGYYISISRS-----KADLAPTN-YTRKQTLTNEERYITTELKDC 575 Query: 544 ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCR 603 E R+ N +E + F L + + + + ++ +D+ ALA +A Q YCR Sbjct: 576 EARLNNLNEQIRQLEYDLFISLRDQVAGHVSLIRQVAAAVSAVDVLAALAEVAVYQGYCR 635 Query: 604 PIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSG---KLWLLTGPNM 660 P I ++DGRHP+VE++L + F+ ND L + + L +LTGPN Sbjct: 636 PEIVKGRPVFIEDGRHPVVEQSLP---AGFFVPNDTGLGSVENAPTNVTPDLIILTGPNA 692 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GKS +LRQ LI +MAQ+GS+VPA + +G+ D++F+RVG+ D+LA+G+STFMVEM ET Sbjct: 693 SGKSCYLRQVGLIQLMAQIGSFVPAKSSMLGVCDRIFTRVGAVDDLATGQSTFMVEMNET 752 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 A+ILN AT QS V+LDEIGRGTAT DGLSIAWA EYL R + ATH+HEL +L+ Sbjct: 753 ANILNHATAQSLVLLDEIGRGTATFDGLSIAWAVAEYLASDIGARTIFATHYHELNELAS 812 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 L N + V + + I+FLH+V PG AD SYGI+ G+LAGLP TVISRA ++ E Sbjct: 813 ILSNVENYQVTVKEMPDKIVFLHQVRPGGADKSYGIEAGRLAGLPATVISRARQVMSQIE 872 Query: 841 K 841 + Sbjct: 873 Q 873 >gi|288556899|ref|YP_003428834.1| DNA mismatch repair protein MutS [Bacillus pseudofirmus OF4] gi|288548059|gb|ADC51942.1| DNA mismatch repair protein MutS [Bacillus pseudofirmus OF4] Length = 880 Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust. Identities = 283/839 (33%), Positives = 465/839 (55%), Gaps = 65/839 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD-IPMC 84 TPMM+QY++IK+ D+ +F+R+GDFYE+FFDDA+ A++ L ITLT RG+ G+D IPMC Sbjct: 5 TPMMQQYVDIKAQYEDAFLFFRLGDFYEMFFDDAVKAAQELEITLTGRGQ--GEDRIPMC 62 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H+A+ Y+ +L++ G++IAICEQ+E P AK +V+R VV+++TPGT+ + ++ Sbjct: 63 GVPYHSADQYMSRLVEKGYKIAICEQVEDPKTAK-----GVVKREVVKMLTPGTVMDGKM 117 Query: 145 LSPTDSNYLMAVARIRTE-WAIAWIDISTGIFKIST--SNHDRLISDIMRIDPREIIFSE 201 + ++NYL + + E IA D++TG ++ L+ ++ +EI+ S Sbjct: 118 IREKENNYLASFSIFEDESIGIARCDLTTGEGAVTMIQGGQTELLQELSATGAKEIVVSP 177 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 + + L LG + D + + D V T+G Sbjct: 178 N-IEREQLTELERLLGVTVSYEEEAALDERY-KHLVEDLSQSKLVTTYGRL--------- 226 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDY 320 ++Y+ +TQ + + E + + +D + NLE++ TL +++ SLL +D+ Sbjct: 227 --LNYLSRTQKRSLDHLQKVEWYHAEEYMKLDLHTKRNLELVETLREKKKKGSLLSIVDH 284 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 ++T GGRL I PL D KI+ R ++ F+ + L I+ L+ D+ R R Sbjct: 285 TVTAMGGRLLKRWIERPLLDEAKISGRQKAVTAFMNDYFLREEIRDELRQVYDLERLAGR 344 Query: 381 LKIGRGEPKDIAVIRDG------IRSGINILN-----LFLKNDLPEELRGAVEKLKKLPQ 429 + G +++ ++ I + L+ + N+ P +++ Sbjct: 345 IAYGNVNARELVQLKKSLQKIPLIEEKVTSLDDSFKDRWFTNEAP---------FEQVID 395 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 LE+++ +D P +DGG + +G + LD R K+ IA L+ K ET IK Sbjct: 396 LLERSIV----EDPPISIKDGGMILEGFNQELDTYRDASVNGKKWIAELEQKERLETGIK 451 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 +LK+ N GY++EVT ++ +L++ R+ +QT++N RF T EL + E I Sbjct: 452 SLKVGFNKVFGYYLEVTRANRHLLEEG-----RYERKQTLTNAERFVTPELKEKEALILE 506 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 A +E + F ++ + + L +Q I+ ID+ + A ++++Q+Y +P++ Sbjct: 507 AEEKMEQLEYDLFVMIREQVKDYVPHLQALAQTISEIDVLLGFATVSEKQHYQKPVLRPV 566 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 + +++ GRHP+VE +++ ++ ND L + + L+TGPNM GKST++RQ Sbjct: 567 GDVLIEGGRHPVVESVIQKGE---YVPNDVALHPGRE-----MLLITGPNMAGKSTYMRQ 618 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 AL+ IMAQ+G +VPA A + I D++F+R+G+AD+LASG+STFMVEM+ET L++AT Sbjct: 619 LALLSIMAQIGCFVPAEKAELPIFDQIFTRIGAADDLASGQSTFMVEMLETQYALSKATE 678 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 S ++LDEIGRGT+T DG+++A A IEY+H + L +TH+HELT LS L+ N Sbjct: 679 CSLILLDEIGRGTSTYDGMALAQAIIEYIHNEIGAKTLFSTHYHELTALSDELEHVQNVH 738 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 + + + ++FLHKV+ G AD SYGI V +LA LP V SRA +LK E NQK Sbjct: 739 VSAVEEDGKVVFLHKVVDGQADRSYGIYVAQLAELPKEVTSRAEQLLKVLEG---QNQK 794 >gi|229495894|ref|ZP_04389620.1| DNA mismatch repair protein MutS [Porphyromonas endodontalis ATCC 35406] gi|229317207|gb|EEN83114.1| DNA mismatch repair protein MutS [Porphyromonas endodontalis ATCC 35406] Length = 886 Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust. Identities = 305/911 (33%), Positives = 490/911 (53%), Gaps = 76/911 (8%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M+Q+++IK +PD+++ +R+GDFYE F +DA+ ASR LGITLT+R + + + G Sbjct: 8 TPLMKQFLQIKGKHPDAILLFRVGDFYETFLEDAVEASRILGITLTRRANGSAQHVELAG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H Y+ +L++ G R+AIC+Q+E P + KK LV+R + LVTPG D +L Sbjct: 68 FPHHALETYLPRLVRAGKRVAICDQLEDPKQTKK-----LVKRGITELVTPGVAVSDNVL 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMR-IDPREIIFS---- 200 ++NY+ A++ + +A++D+STG F +T L+ ++ P+EI+ Sbjct: 123 ENKENNYVAAISFAKERMGVAFLDLSTGEFA-TTEGCAALVDKLLAGYRPKEILVERSTR 181 Query: 201 ---EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVE 256 + +L++ Y +FE + F S ++ R+ ++ + FG + Sbjct: 182 LLYDSQLTYRTY--IFEA--------DDWLFIPSNNQERLLRHFAVRNFKGFGLEGMESA 231 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 TAA A + Y+ TQ I R D + + ID +LE+L T++ +E LK Sbjct: 232 LTAAGAILHYLDLTQHNELGHITSLHRIDEEQYVRIDGFTARSLELLSTMN--QEGCSLK 289 Query: 317 TI-DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 I D + T G RL + IA PL I R + + + + +++ L+ D+ Sbjct: 290 DILDRTYTPMGARLLRQWIAFPLKSVAAIEERQSVVRALVDDAQVRFVLEEHLREMGDLE 349 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R+ S++ + R P+++ + D + + I + ++ P L+ ++L + L + Sbjct: 350 RTASKVSMKRISPREMVHLADALTALEPIKKVAEESACPS-LQALGKELAPCTE-LRDRI 407 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 L+ D P GG + G + LDE RSL K + SLQ + E T I +LK+ Sbjct: 408 RYELNPDAPPLVNRGGVIATGYNEELDELRSLAFSGKDYLLSLQQREIERTGITSLKVGF 467 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDR----FIHRQTMSNLTRFTTLELIDLENRITNAT 551 NN GY+IEV ++ KDR +I +QT+ + R+ T EL + E++I A Sbjct: 468 NNVFGYYIEVRNTH----------KDRVPPEWIRKQTLVSAERYITEELKEYESKILGAE 517 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 L +E F L + Q +L S ++A++D+ + A + + +YC P +++S Sbjct: 518 ERILALETMLFAELVDDAQPQVTALLRNSHLLAMLDVLRSFAEVGEAYDYCCPQVNDSLT 577 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 +K+GRHP++E+ L Q +P+IAND L D N ++ ++TGPNM GKS LRQ A Sbjct: 578 IDIKEGRHPVIERQLPQ--GEPYIANDVHL----DNNDCQIMIVTGPNMSGKSALLRQTA 631 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LI +MAQ+GS+VPA A IG+VD +F+RVG++DN++ G STFMVEM E ASILN T +S Sbjct: 632 LITLMAQIGSFVPAREASIGLVDSIFTRVGASDNISMGESTFMVEMQEAASILNNLTPRS 691 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNAT 789 V+ DE+GRGT+T DG+SIAWA +EYLH + + L ATH+HEL +L+K R N Sbjct: 692 LVLFDELGRGTSTFDGVSIAWAIVEYLHNHPAHHPKTLFATHYHELNELAKKHPRVRNYN 751 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 + + +IFL K+ G +HS+GIQV KLAG+P ++ RA +L+ EK H Q++ Sbjct: 752 VSAREVEGTMIFLRKLEEGGNEHSFGIQVAKLAGMPRQIVERAQVVLQCLEK--EHAQEE 809 Query: 850 ----------------MRLYYPEIQTKESKNNLS---KNDKLFVE---KIKCLNLDEMSP 887 ++ ++E LS D L VE + ++L+ ++P Sbjct: 810 SCTSADAEKAIETAGLKATHHSSAPSREDLVQLSFFQLEDPLLVEIRDDLLGIDLNNLTP 869 Query: 888 LTALKTLYAVK 898 L AL L+ +K Sbjct: 870 LEALNRLHEIK 880 >gi|255994617|ref|ZP_05427752.1| DNA mismatch repair protein MutS [Eubacterium saphenum ATCC 49989] gi|255993330|gb|EEU03419.1| DNA mismatch repair protein MutS [Eubacterium saphenum ATCC 49989] Length = 901 Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust. Identities = 307/884 (34%), Positives = 493/884 (55%), Gaps = 51/884 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K+ TPMMRQYIEIK NP ++F+R+GDFYE+FF+DA L S+ L +TLT R G+ P Sbjct: 5 KTLTPMMRQYIEIKENNPSCILFFRLGDFYEMFFEDAELVSKELQLTLTARMSGNGEKAP 64 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP H A+ YI +L+K G++IAICEQ+++P E+ N LV R +VR++TPGT+ ++ Sbjct: 65 MCGVPYHAADAYIARLVKKGYKIAICEQMQTPEES----NGKLVEREIVRVITPGTVLDE 120 Query: 143 QLLSPTDSNYLMAVARIRTE-WAIAWIDISTGIFKI----STSNHDRLISDIMRIDPREI 197 ++L SNY++++ + + +A+ DISTG + STS+ L ++++ I+P EI Sbjct: 121 KILRAGSSNYILSITQNNNNTFGLAYSDISTGELSVLEVYSTSD---LENEVVTINPVEI 177 Query: 198 IF--SEKELSHA-EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFS 253 I + KE+S E S F ++ + + +I+E+ I + I ++ G S Sbjct: 178 IMPTALKEVSGVVEAASGF----YISYLDTDYYKQSNINEA-IFSQFGIKSLLGIGISED 232 Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQ 312 A A + YI++TQ + I +E + + +D + +LE++ L Sbjct: 233 AAYVNALGALLIYIRRTQRSSLGHIVEVHQETPSNYMSLDKSTMRSLELIEPLYEADGNY 292 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 SL+ + + T G RL + PL + I R D+I F+++ I I+K L + Sbjct: 293 SLVDILGRTKTSMGARLLRSWLKRPLKNLQNITKRHDAIEKFVEHKEDIKTIRKALGNIY 352 Query: 373 DVPRSLSRLKIGRGEPKDIAVIR---------DGIRSGINILNLFLKNDLPEELRGAVEK 423 D R R+ GR +D+ ++ + + +N + L EL ++ Sbjct: 353 DFKRICGRIGAGRANARDLISMKLSLMRIPELKSLLTNVNTQGDKQASALLNELYDRIDD 412 Query: 424 LKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 + + +E + L D+ P +G ++DG D LD + K IA L+ Sbjct: 413 FEDVSSLIE----NALVDEPPITITEGEIIKDGFDEELDSMKRAIADGKAWIAGLENTER 468 Query: 484 EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDL 543 E T IK LK+ +N GY++EV ++S KDL D +I +QT+ N R+ T +L ++ Sbjct: 469 ERTGIKALKVGYNKVFGYYLEVRNAS-----KDL-VPDEYIRKQTLVNAERYITPKLKEV 522 Query: 544 ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCR 603 E + A N E + F+ + + I E+ L + + IA ID+ LA +A + Y + Sbjct: 523 EAEVLGAQNKINKREYDCFQNIRDMISERILELMHTADAIAEIDVLAGLAKVAIDNGYTK 582 Query: 604 PIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 P + + + V GRHP+VE ++ F N+ + D + L L+TGPNM GK Sbjct: 583 PNMHDGKDIEVVQGRHPVVEAVMEYNQ---FTGNNFSI----DADEKSLLLITGPNMAGK 635 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 ST++RQNALIV+M+Q+GS++PA A+IGIVD++F+R+G+ DNLA G+STF +EM E A I Sbjct: 636 STYMRQNALIVLMSQIGSFIPAESANIGIVDRIFTRIGAGDNLAKGQSTFFLEMSELAYI 695 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKS 781 L AT++SFVILDEIGRGT+T DGLSIA+A ++L + + + R L ATH+HEL++L Sbjct: 696 LKNATDKSFVILDEIGRGTSTYDGLSIAYALCKFLLQGDNPKVRTLFATHYHELSELEGV 755 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE- 840 L N T+ V + N +IF HK+ G A+ SYG+ V KLAG+P+ ++ A LK E Sbjct: 756 LPGLLNLTIAVFEKNGKVIFSHKIKKGSAEKSYGVDVAKLAGVPDELLRSAKQKLKELEF 815 Query: 841 KLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDE 884 + + QK + + ++ + + ++++ + EK++ L D+ Sbjct: 816 EAERYKQKLYDVNFDALKAQRTIDDITDELNINAEKLETLEKDK 859 >gi|229824006|ref|ZP_04450075.1| hypothetical protein GCWU000282_01310 [Catonella morbi ATCC 51271] gi|229786360|gb|EEP22474.1| hypothetical protein GCWU000282_01310 [Catonella morbi ATCC 51271] Length = 860 Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust. Identities = 296/893 (33%), Positives = 487/893 (54%), Gaps = 64/893 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY EIK+ PD+ +FYR+GDFYE+FFDDAL A++ L ITLT R K IPMCG Sbjct: 8 TPMMAQYHEIKAQYPDAFLFYRLGDFYEMFFDDALKAAKILEITLTSRNKKADNPIPMCG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI++LI+ G+++AICEQ+E P + K +V+R VV+++TPGTL E++ L Sbjct: 68 VPYHSAKDYIKRLIESGNKVAICEQVEDP-----KLTKGMVKREVVQVITPGTLIEEEAL 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKEL 204 ++NYL+A+ + + +A ID+STG K++ T +L S++ + P E++ Sbjct: 123 EVKENNYLVALRQEGQTFYLAAIDVSTGEIKVTQTPRPAQLFSELYALKPSEMVVD---- 178 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S +T + Q + S D + T V T Q A+ Sbjct: 179 ------SSLDTEVKDQINQQLAIYLSSF------DLTDQTEVGTQWVLDQASPQEASLLN 226 Query: 265 SYIKKTQMVNKPTIGYPE---REDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 + + K +G+ + R + L ++ A+S LE+ ++L +G ++ SLL ID+ Sbjct: 227 LLLAYLYSIQKQALGHLQPVVRYALADYLQMNHFAKSQLELTKSLRTGRKKGSLLWLIDH 286 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSI----NFFIQNPILINPIQKILKSSPDVPR 376 + T GGR+ + + PL D + R + + + + LI + + D+ R Sbjct: 287 TKTAMGGRMLHQWLEKPLIDEGILRQRHQQVAQLMSAYFERLDLIAAFETVY----DLER 342 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 ++R+ +G +D+ +R + I +N L + + E L Q L + + Sbjct: 343 LVTRISLGTAHARDVDHLRQSL-GQIPHINRILDGLNASQNQVLFEGLPDF-QELYQLID 400 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 ++L+D+ P +G +R G LD+ R + +A LQ + + T +K LK+ +N Sbjct: 401 TVLADEPPISVTEGNIIRSGYHEELDQYRDALANGHQWLAELQQRERDRTGLKTLKVGYN 460 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+IE++ ++ R+I +QT+SN RF T EL LE I A A Sbjct: 461 KVFGYYIEMSRLQSANF-----DDPRYIRKQTLSNAERFITEELKQLETTILGAQEKATQ 515 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP-IIDNSTNFIVK 615 +E + F L AI + L + IA +D+ A L++ ++YC+P ++ + +F ++ Sbjct: 516 LEYQLFTELRQAIAAYTGQLQTLASQIASLDVLANFASLSEREDYCQPELVAEAKSFQLE 575 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 RHP +EK + + + F+ ND L LTGPNM GKST++RQ A VI Sbjct: 576 ASRHPALEKLIGKAA---FVPNDFVLLPDQPLLL-----LTGPNMSGKSTYMRQIAFCVI 627 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 + Q+G +VPA A + IVDK+F+R+G++D+++SG+STFMVEM+ET L +AT +S ++ Sbjct: 628 LNQIGCFVPAKSAKLPIVDKIFTRIGASDDISSGQSTFMVEMMETNVALREATPRSLLLF 687 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGTAT DG+++A A + YL + + + +TH+HELTDLS L N + ++ Sbjct: 688 DEIGRGTATFDGMALAEAILYYLAQEVQAATVFSTHYHELTDLSTKLPVLRNIHVGATEQ 747 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 ++FLHK++ G AD SYGI V KLAGLP +++ ++ ++L+ E N + +R P Sbjct: 748 KGQVVFLHKILEGAADKSYGIHVAKLAGLPQSLLVQSQEVLQELES----NSQWLRRQEP 803 Query: 856 EIQ----------TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E TK S L ++ + ++++ L++++++PL AL+ L A++ Sbjct: 804 ESDGQLSLFDLPATKPSPKVLREDQEQVLKQLAALDINQLTPLQALEGLAAMQ 856 >gi|58581265|ref|YP_200281.1| DNA mismatch repair protein MutS [Xanthomonas oryzae pv. oryzae KACC10331] gi|75508247|sp|Q5H2C5|MUTS_XANOR RecName: Full=DNA mismatch repair protein mutS gi|58425859|gb|AAW74896.1| DNA mismatch repair protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 873 Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust. Identities = 295/888 (33%), Positives = 478/888 (53%), Gaps = 50/888 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M+Q+ KS PD L+F+RMGDFYELF+DDA A+R L ITLT+RG G IPM G Sbjct: 20 TPLMKQFFAAKSDYPDLLLFFRMGDFYELFYDDARKAARLLDITLTQRGSSGGAPIPMAG 79 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH Y+ +L+ +G +AICEQI P AK LV R VVR+VTPGT+T++ LL Sbjct: 80 VPVHAYEGYLARLVALGESVAICEQIGDPALAK-----GLVERKVVRIVTPGTVTDEALL 134 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEKEL 204 LMA++R + + +AW D++ G F ++ + D L ++I R++P E++ +++ Sbjct: 135 DERRDTLLMAISRSKQGYGLAWADLAGGRFLVNEVDTVDALEAEIARLEPAELLVPDED- 193 Query: 205 SHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + G + V + P FD ++ ++ + + FG + TAAA A Sbjct: 194 ---HWPEFLR--GRIGVRRRPPWLFDADSGRRQLLAFFKLHDLSGFGIDDKPSATAAAGA 248 Query: 264 IS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 + Y+++TQ P + E + +++A R +LE+ + G +LL +D ++ Sbjct: 249 LLGYVEETQKQRLPHLTSIATEVASEAISMNAATRRHLELDTRVDGDTRNTLLGVLDSTV 308 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGRL + PL + R ++ I + +++ ++ D+ R L+R+ Sbjct: 309 TPMGGRLLRRWLHRPLRLRDVLVQRHHAVGNLIDAGADAD-LREAFRALGDLERILTRVA 367 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK------TLS 436 + P+D + +RDG+ + + D P +L+ L L + L Sbjct: 368 LRSARPRDFSTLRDGLALLPKVRTILAPLDSP--------RLQTLHAELGEHDATAHLLI 419 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 S +++ P DGG + G DA LDE R L + + + L+ + + I LK+ +N Sbjct: 420 SAVAETPPLKLSDGGVIASGYDAELDELRRLSTNADQFLIDLEQRERASSGIATLKVGYN 479 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+IE++ A ++ + RQT++N R+ T EL E+++ +A +L Sbjct: 480 RVHGYYIEISKGQAE------KAPLHYSRRQTLTNAERYITEELKTFEDKVLSARERSLS 533 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 E +E L + + + E L + ++ +D+ A A+ ++ +P +D++ ++ Sbjct: 534 REKLLYEGLLDTLGTELEGLKRCAGALSELDVLAGFAERAQALDWSQPELDSAPCLRIER 593 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE PF ND DL +D+ ++ ++TGPNMGGKST++RQNALIV++ Sbjct: 594 GRHPVVEAV----RDHPFEPNDLDLH--SDR---RMLVITGPNMGGKSTYMRQNALIVLL 644 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A +GSYVPAS A IG +D++ +R+G+ D+LA G+STFMVEM ET+ IL+ AT QS V++D Sbjct: 645 AHIGSYVPASRAVIGPIDRILTRIGAGDDLARGQSTFMVEMAETSYILHHATPQSLVLMD 704 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK-----SLKRFHNATLQ 791 EIGRGT+T DGL++A A +L TNRC L ATH+ ELT L+ N L Sbjct: 705 EIGRGTSTYDGLALADAVARHLAHTNRCYTLFATHYFELTALADESHDGGASGIANVHLD 764 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR 851 + E ++F+H V G A+ S+G+QV LAGLP +++A L E+ + + Sbjct: 765 AVEHGERLVFMHAVKDGPANRSFGLQVAALAGLPKAAVTQARRRLVELEQRGGESHS-AQ 823 Query: 852 LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + + + + E ++ L+ DE++P AL+ LY +KA Sbjct: 824 MAPTALDAPQQFGLFTAPSSAAQEALQALDPDELTPKQALEALYRLKA 871 >gi|322388728|ref|ZP_08062325.1| DNA mismatch repair protein HexA [Streptococcus infantis ATCC 700779] gi|321140347|gb|EFX35855.1| DNA mismatch repair protein HexA [Streptococcus infantis ATCC 700779] Length = 844 Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust. Identities = 296/889 (33%), Positives = 482/889 (54%), Gaps = 70/889 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEISLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI L++ G+++AI EQ+E P +A +V+R VV+++TPGT+ + Sbjct: 67 VPYHSAQQYIDVLVERGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVVDS--- 118 Query: 146 SPTDS--NYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEK 202 S DS N+L+A+ R +++ +A++D+ TG F ++ S+ + +I + RE++ Sbjct: 119 SKPDSHNNFLVAIDREGSQYGLAYMDLVTGDFYVTGLSDFSLVCGEIRNLKAREVVIG-Y 177 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 +LS AE + L + V + + D + +SR+A VE A+ Sbjct: 178 DLSEAEEQILSRQMNLVLSYEQETYEDVHLLDSRLAT---------------VEGAASGK 222 Query: 263 AISYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKT 317 + Y+ +TQM KP I Y +I+ L +D A +++L+++ SG ++ SL Sbjct: 223 LLQYVHRTQMRELNHLKPVIRY----EIKDFLQMDFATKASLDLVENARSGKKQGSLFWL 278 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D + T G RL I PL D +I R + + F+ + + + LK D+ R Sbjct: 279 LDETKTAMGMRLLRSWIQRPLIDLDRIIERQEVVQVFLDYFFERSDLTESLKGVYDIERL 338 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 SR+ G+ PKD+ + + S I + + P L +E+L +P+ LE +S+ Sbjct: 339 ASRVSFGKSNPKDLLQLATTLGSVPRIRAILEGMEQPA-LAYLIEQLDAIPE-LENLISA 396 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 ++ + P +GG +R G D +LD+ R + + IA ++ K E + I LKI +N Sbjct: 397 AIAPEAPHVITEGGIIRTGFDETLDKYRRVLREGTSWIAEIEAKERENSGINTLKIDYNK 456 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+ VT+S + F + T+ N RF T EL +E + A + + Sbjct: 457 KDGYYFHVTNSQLGNVPA------HFFRKATLKNSERFGTEELARIEGEMLEAREKSANL 510 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E E F + + + + L +Q IA +D+ LA++A+ Q+ RP + +++G Sbjct: 511 EYEIFMRIREEVGKYIQRLQALAQGIATVDVLQGLAVVAENQHLIRPEFGQESRIDIQNG 570 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RH +VEK + Q+ +I N + D+++ + L+TGPNM GKST++RQ A+ +MA Sbjct: 571 RHAVVEKVMGAQT---YIPNSIQM----DEDT-SIQLITGPNMSGKSTYMRQLAITAVMA 622 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 QMGSYVPA A + I D +F+R+G+AD+L SG+STFMVEM+E + ++ AT S ++ DE Sbjct: 623 QMGSYVPAESAQLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANNAISHATKDSLILFDE 682 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 +GRGTAT DG+++A + IEY+HE + L ATH+HELT L SL+ N + + N Sbjct: 683 LGRGTATYDGMALAQSIIEYIHEHIGAKTLFATHYHELTSLEASLEHLVNVHVATLEQNG 742 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 + FLHK+ PG AD SYGI V K+AGLP ++ RA IL E N + Sbjct: 743 QVTFLHKIEPGPADKSYGIHVAKIAGLPADLLKRADAILTQLESQGQENPISIN------ 796 Query: 858 QTKESKNNLSKNDKLFVEK--------IKCLNLDEMSPLTALKTLYAVK 898 +N +++ LF EK + +++ M+P+ A+ L +K Sbjct: 797 ----QRNVVNEQMSLFDEKEENPILAELAQVDVYNMTPMQAMNLLLELK 841 >gi|309803573|ref|ZP_07697665.1| DNA mismatch repair protein MutS [Lactobacillus iners LactinV 11V1-d] gi|308164321|gb|EFO66576.1| DNA mismatch repair protein MutS [Lactobacillus iners LactinV 11V1-d] Length = 854 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 283/876 (32%), Positives = 477/876 (54%), Gaps = 49/876 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY +IK PD+ +FYR+GDFYELF DDA+ ++ L +TLT R K IPM G Sbjct: 6 TPMMEQYYKIKQQYPDAFLFYRVGDFYELFEDDAVKGAKLLELTLTHRSNKSAKPIPMAG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP + YI L+ G+++AICEQ+E P +A+ +V+R +++LVTPGT+ D Sbjct: 66 VPHLAVDSYINTLVDKGYKVAICEQLEDPKKAQ-----GMVKRGIIQLVTPGTVINDNPD 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 +SNYL ++ W + + D+STG + ++ + ++++++ + RE+++ E Sbjct: 121 QAKESNYLTSLCSSSQGWGLTYCDLSTGESYATHLTSWEMIVNELLSLQTRELVYGETLT 180 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S + +F + ++QP +++ + + T +Q+E A + Sbjct: 181 SDEQ---IFLKKAGITLSQP----------VKLSGEHAEVSYVTQQLHNQLEIAATKQLL 227 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILR-TLSGSREQSLLKTIDYSIT 323 +Y+ TQ + + + + L + ++NLE+++ T +G + SL +D + T Sbjct: 228 AYLLATQKRSLAHLQVTQSYEPNQYLQMSHIVQTNLELIKSTKTGKKMGSLFWLLDKTST 287 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 GGRL I PL ++I +R + + I K L+ D+ R R+ + Sbjct: 288 AMGGRLLKSWIERPLISLSEIKSRQLVVTALFDDYFSREKIIKQLQGVYDLERLTGRVAL 347 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFL--KNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 G +++ + D + I+N+ KN++ ++ LK + + KT+ + Sbjct: 348 GSANARELLQLADSLAVVPEIINILANSKNEVLNNFAQKIDPLKGIHDLIVKTIV----E 403 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + P ++GG ++ G + LD R K+ +A + E+T I NL++ +N GY Sbjct: 404 NPPLSTKEGGIIKSGVSSQLDRYRDAMINGKKWLADMANSEREKTGINNLRVGYNKVFGY 463 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IEVT+S K+ DR++ +QT++N R+ T+EL + E I A + + +E E Sbjct: 464 YIEVTNSY-----KNKVPLDRYMRKQTLTNAERYITVELKEHEALILEAQDYSTDLEYEL 518 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY-CRPIIDNSTNFIVKDGRHP 620 F L I + +L ++ ++ +D+ ++L+++ NY C +S+ + +GRHP Sbjct: 519 FTNLREDIKKYIPALQKLAKQLSSLDVLATFSLLSEQNNYVCPQFSQDSSAINIVNGRHP 578 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + S + +I ND + ++L+TGPNM GKST++RQ ALI+IMAQ+G Sbjct: 579 VVEKVM---SDEEYIPNDVKMD-----EQTNIFLITGPNMSGKSTYMRQLALIIIMAQIG 630 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 ++PA A + I DK+F+R+G+ D+L SG+STFMVEM E L AT +S ++ DEIGR Sbjct: 631 CFIPADSAVLPIFDKIFTRIGAGDDLISGKSTFMVEMSEANIALKNATKRSLILFDEIGR 690 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A I+YLH+ + L ATH+HELTDL + L N + + N +I Sbjct: 691 GTATYDGMALAGAIIKYLHDKVGAKTLFATHYHELTDLDQELAHLKNIHVGATQENGHLI 750 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ-- 858 FLHK++PG AD SYGI V +LAGLP V+ A +LK EK D ++ + + Q Sbjct: 751 FLHKILPGAADQSYGIHVAQLAGLPTKVLREATHMLKQLEK-----NSDNQVAFSDEQLD 805 Query: 859 --TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALK 892 ++ +S ++ + +IK L L+EM+PL ++ Sbjct: 806 LFGSSDQHKMSDEEQDVLTQIKNLYLNEMTPLQVMQ 841 >gi|332685817|ref|YP_004455591.1| DNA mismatch repair protein MutS [Melissococcus plutonius ATCC 35311] gi|332369826|dbj|BAK20782.1| DNA mismatch repair protein MutS [Melissococcus plutonius ATCC 35311] Length = 862 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 291/888 (32%), Positives = 488/888 (54%), Gaps = 49/888 (5%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM QY+ IK D+ +FYR+GDFYE+F+DDA A++ L +TLT R K+ + IPMC Sbjct: 7 NTPMMEQYLTIKEQYSDAFLFYRLGDFYEMFYDDATQAAQLLELTLTSRNKNADEPIPMC 66 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G+P H A +YI LI+ G+++AICEQ+E P + K +V+R VV+L+TPGT + Sbjct: 67 GIPYHAAQNYIDILIEKGYKVAICEQVEDP-----KAVKGMVKREVVQLITPGTAMNTKT 121 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 + +NYL A+ T + +A++D+STG K + + + +I++ + +E++ Sbjct: 122 IDAKSNNYLTALISKGTNFGLAYVDLSTGELKTTILMDEESVINEASALQTKEMVIG--- 178 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 +L ++L + + N+ F + A++ +T+ T +++E Sbjct: 179 ------NTLSDSLYTILKNRLNIVFSKQENAEENAEFSFLTSELT----NEIEIEVTGKL 228 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 ++Y+ TQ + I L +DS ++ NLE+ +++ +G ++ +LL +D + Sbjct: 229 LTYLAITQKRSLAHIQRAVEYQPDHYLKLDSYSKFNLELTQSIRTGQKKGTLLWLLDETK 288 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGRL + + PL +I R + + + +Q L S D+ R R+ Sbjct: 289 TAMGGRLLKQWLDRPLIQEEQIKKRQEMVQSLLDAYFERMDLQTALTSVYDLERLAGRVA 348 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 G +D+ ++ + I L + D E + + L + + +E + ++++ Sbjct: 349 FGNVNGRDLIQLKTSLEQVPAIQQLIIGID-HGEWKDLLVDLTPMDELVE-LICMAINEE 406 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P +G ++DG D LDE R K+ +A L+ K T IKNLK+ N GY+ Sbjct: 407 SPLQITEGNVIKDGYDEQLDEYRDAMRHGKQWLAELEAKERMGTGIKNLKVGFNRVFGYY 466 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IE+T ++ L + DR+ +QT++N RF T +L +E+ I A ++ +E + F Sbjct: 467 IEITKANLGNL-----NIDRYERKQTLANAERFVTPQLKQIEHLILEAEEKSVDLEYQLF 521 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN-STNFIVKDGRHPI 621 + I E E L ++ I+ +D+ A A ++++ +Y P + N + + +GRHP+ Sbjct: 522 LKVREQIKENIEYLQYLAKTISNLDVLQAFATVSEKYHYVCPELKNYGKSLSIVEGRHPV 581 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VEK L Q +I N+ ++ ++ L+TGPNM GKST++RQ AL VIMAQ+G Sbjct: 582 VEKVLGYQE---YIPNNIEMD-----SATTTLLITGPNMSGKSTYMRQLALTVIMAQIGC 633 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA A + I D++F+R+G++D+L +G+STFMVEM+E L AT S ++ DE+GRG Sbjct: 634 FVPAESAILPIFDQIFTRIGASDDLIAGQSTFMVEMMEANQALRHATPNSLILFDELGRG 693 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 TAT DG+++A A IEY+H+ R + L +TH+HELT L +SL N + + N +IF Sbjct: 694 TATYDGMALAQAIIEYIHQNVRAKTLFSTHYHELTILDQSLPDLKNVHVGAIEKNNEVIF 753 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK- 860 LHK++ G AD SYGI V K+AGLPN ++ RA +L + E +N + P ++T Sbjct: 754 LHKIMEGPADKSYGIHVAKIAGLPNGLLERATVVLSSLES--ENNLTKLDTSIPIVETSK 811 Query: 861 ---ESKNN-------LSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + +N LS N ++ +K +NL EM+P+ AL TL+ ++ Sbjct: 812 HIIQEENGQVSLFEELSPNVSSIIDTLKRINLLEMTPMDALNTLHDLQ 859 >gi|320527174|ref|ZP_08028361.1| DNA mismatch repair protein MutS [Solobacterium moorei F0204] gi|320132502|gb|EFW25045.1| DNA mismatch repair protein MutS [Solobacterium moorei F0204] Length = 839 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 297/878 (33%), Positives = 479/878 (54%), Gaps = 62/878 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ +K D+++FYR+GDFYE+FFDDA +AS+ L + LT + + + +PMCG Sbjct: 6 TPMMQQYLAVKKEYEDAILFYRIGDFYEMFFDDAKIASKELDLVLTGKNAGVEERVPMCG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H A YI +L+ G ++AICEQ + P EA LV R+V+R++TPGT+ + ++ Sbjct: 66 IPHHAAAAYIPRLVSRGFKVAICEQTQDPKEAV-----GLVTRDVIRVITPGTVMQ-EIS 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREII----F 199 S YL A+ +++A +++STG + H L+ ++R + RE++ F Sbjct: 120 DEKASVYLAAITDYGYGYSLAIVEMSTGENYVQNIEHKDVLLLQTLLRSNVREVVVPSDF 179 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 EK L KS E ++ E+RI + Y T G + A Sbjct: 180 KEKTL-----KSFRELQIVISYC----------DETRIKEEYLPLTE---GILKDYDMHA 221 Query: 260 AAAAISYIKKTQ--MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLK 316 ++Y++ TQ M+ + ERED L++D A R NLE++++L + +L Sbjct: 222 YGRMLNYLENTQKHMLGHLQVTRIERED--EVLYMDFATRQNLELVQSLHENGKAITLWS 279 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D + G R + I PL KI R + + IQN + ++ + D+ R Sbjct: 280 FLDACKSAMGSRQLRKWIEKPLVSREKIEARFNKTEWLIQNFMRRQQLRDSFSNIYDLQR 339 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 ++R + D + + I++ L E + K+ L Q L + L Sbjct: 340 LIARCAMNTANAVDCQRLTKTLAEVPTIMHA-----LDETVFNEKHKVDPL-QELYQKLK 393 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 D+ P DGG RDG +A LDE R ++ + IA L+ K E T IK LKI +N Sbjct: 394 DAFVDNPPVQISDGGMFRDGYNAELDEARKIQHSGRTFIAELEAKERERTGIKTLKIGYN 453 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+IE++ ++A ++ D +I RQT++N RF + EL + E+ I +A +A+ Sbjct: 454 KVFGYYIEISKAAAQAVQDDW----GYIRRQTLTNNERFISPELKEKEDAILHAEENAIR 509 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 IE + F+++ + I L S+ +A +D +A+A ++ + Y RP D FI ++ Sbjct: 510 IEKQLFQMILDEIRAYLPRLQKLSKFLAEVDAQVAMAEVSAKYGYVRPQFDEDRLFI-EN 568 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 G+HPI++ +K + ++AN D+ D + L+TGPNMGGKST++RQ ALIVIM Sbjct: 569 GKHPILDDMMK---NPKYVANSTDMHKDQD-----ILLITGPNMGGKSTYMRQTALIVIM 620 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQMG +VPA + I DK+F+R+G++D++ SG+STFMVEM E L +AT+ S ++ D Sbjct: 621 AQMGCFVPAKSCIMPIFDKIFTRIGASDDILSGQSTFMVEMSEANLALQEATSSSLILFD 680 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DG+++A A IEY+ + + +TH+HELT +S +L N + V ++N Sbjct: 681 EIGRGTSTYDGMALAQAMIEYIATCIHAKTMFSTHYHELTVISDNLPNVKNMHVVVKENN 740 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 + + FL+K+ G A HSYGI V +LAGLP+ V++RA D+ K E Q++ +L E Sbjct: 741 DEVTFLYKMADGPAGHSYGINVARLAGLPDAVLNRAKDLQKELESTKRVVQQNYQLV--E 798 Query: 857 IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 + ++ + + +EK+K ++ D +SP A L Sbjct: 799 MHKEDPRT------EALMEKLKQVDPDNLSPREAWVML 830 >gi|281412509|ref|YP_003346588.1| DNA mismatch repair protein MutS [Thermotoga naphthophila RKU-10] gi|281373612|gb|ADA67174.1| DNA mismatch repair protein MutS [Thermotoga naphthophila RKU-10] Length = 793 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 294/830 (35%), Positives = 459/830 (55%), Gaps = 64/830 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M QY+ IK DS++ +R+GDFYE FF+DA + S+ L I LT+R +D PM G Sbjct: 4 TPLMEQYLRIKEQYKDSILLFRLGDFYEAFFEDAKIVSKVLNIVLTRR-----QDAPMAG 58 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H N Y++KL++ G+++AIC+Q+E P ++KK L+RR V R+VTPG++ ED+ L Sbjct: 59 IPYHALNTYLKKLVEAGYKVAICDQMEEPSKSKK-----LIRREVTRVVTPGSIVEDEFL 113 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMR-IDPREIIFSEKEL 204 S T+ NY+ V+ + + + D+STG + S+ ++ D+++ +I+ SE Sbjct: 114 SETN-NYMAVVSEEKGRYCTVFCDVSTGEVLVHESSDEQETLDLLKNYSISQIVCSEHLK 172 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADY------YNITTVDTFGSFSQVEKT 258 S SL E V + SISE +D YN+ + F S + Sbjct: 173 S-----SLKERFPGV--------YTESISEWYFSDLEEVEKAYNLKDIHHF-ELSPLALK 218 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA I Y+K T + + P + + +DSA NL ++ G R ++L + Sbjct: 219 ILAALIKYVKYTMITEDLNLKPPLLISQRDYMILDSATVENLSLI---PGDRGKNLFDVL 275 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 + + T G RL + I PL D +I RL+++ + + + + ++ L + DV R + Sbjct: 276 NNTETPMGARLLKKWILHPLVDRKQIEERLEAVERLVNDRVSLEEMRNFLSNMRDVERIV 335 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 SR++ R P+D+ +R+ + I LN L N G KL P+ L L Sbjct: 336 SRVEYNRSVPRDLVALRETLEI-IPKLNEILSN------FGVFNKLA-FPEELVDLLRRA 387 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + DD +G ++ G + LDE R L + ++ + + K E T I+ L++ +N Sbjct: 388 IEDDPLGSPGEGKVIKRGFSSELDEYRDLLEHAEERLKKFEEKERERTGIQKLRVGYNQV 447 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IEVT ++ + D E K QT+ N RF T EL + E +I A +E Sbjct: 448 FGYYIEVTKANLDKIPDDYERK------QTLVNSERFITPELKEFETKIMAAKERIEEME 501 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 E F+ + + + E L S+ +A +D+ LA A NY +P+ + +K GR Sbjct: 502 KELFKNVCEEVKKHKEILLKISEDLAKMDVLSTLAYDAILYNYTKPVF-SEDRLEIKGGR 560 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ ++ F+ ND + N + ++TGPNM GKSTF+RQ LI +MAQ Sbjct: 561 HPVVERF-----TQNFVENDIYMD-----NEKRFVVITGPNMSGKSTFIRQVGLISLMAQ 610 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA A + + D++F+R+G+ D+LA GRSTF+VEM E A IL ++T +S V+LDE+ Sbjct: 611 IGSFVPAQKAILPVFDRIFTRMGARDDLAGGRSTFLVEMNEMALILLKSTEKSLVLLDEV 670 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DG+SIAWA E L + C+ L ATHF ELT+L K + N T+ V + + Sbjct: 671 GRGTSTQDGVSIAWAISEELIKRG-CKVLFATHFTELTELEKHFPQVQNKTILVKEEGKN 729 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 +IF HKV+ G+AD SYGI+V K+AG+P+ VI+RAY+IL E+ + +N K Sbjct: 730 VIFTHKVVDGVADRSYGIEVAKIAGIPDRVINRAYEIL---ERNFKNNTK 776 >gi|295135547|ref|YP_003586223.1| DNA mismatch repair protein [Zunongwangia profunda SM-A87] gi|294983562|gb|ADF54027.1| DNA mismatch repair protein [Zunongwangia profunda SM-A87] Length = 866 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 281/822 (34%), Positives = 466/822 (56%), Gaps = 36/822 (4%) Query: 29 MRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPV 88 M+QY+ IK+ PD+++ +R+GDFYE F DA++A+R L I LT R G+ + G P Sbjct: 1 MKQYLAIKAKYPDAMLLFRVGDFYETFGADAVVAARILNIVLTNRNNG-GERSELAGFPH 59 Query: 89 HTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPT 148 H+ N Y+ KL+K G R+AIC+Q+E P + K +V+R V+ LVTPG D++L+ Sbjct: 60 HSLNTYLPKLVKAGQRVAICDQLEDP-----KMTKKIVKRGVIELVTPGVALSDEVLNSK 114 Query: 149 DSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHAE 208 +N+L A+ + I+++D+STG F + + + + P E++ +K Sbjct: 115 SNNFLCAIHYGKRNLGISFLDVSTGEFLTAQGTQEYIDKLLQNFSPSEVLIQKK------ 168 Query: 209 YKSLFET-LG---NVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK--TAAAA 262 YK F G +V + VF + SE+ + +++ ++ FG S +E+ A+ A Sbjct: 169 YKKNFALDFGEDYHVFYLEDWVFKNDFASET-LNNHFKTASLKGFG-VSHLEEGIIASGA 226 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 + Y+ +TQ I R + +++D NLE+ + + + +LL+ ID +I Sbjct: 227 ILHYLAETQHNKLQHITAISRIAEEEYVWMDRFTIRNLELYHS-TAANAVTLLEVIDKTI 285 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 + GGRL +A PL +S KI R + + F + +P ++ IQ+ +K D+ R +S++ Sbjct: 286 SPMGGRLLKRWLALPLKNSEKIKKRHEVVGFLLDHPEVLYKIQEQIKEMSDLERLISKVA 345 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 G+ P+++ +++ + + I + L D E L+ + L + L ++ ++++ Sbjct: 346 TGKVSPREVIQLKNSLEAIIPVKETALGCD-NEALKVIGDNLHAC-ELLRSKITESINEE 403 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P + G + G LDE R + K + ++ + + T I +LKI +NN GY+ Sbjct: 404 APVLIQKGNVIARGFHKELDELRDIAFSGKDYLDNMLERESAATGITSLKIGNNNVYGYY 463 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IEV ++ + + ++ +QT+ N R+ T EL + E +I A L +E E F Sbjct: 464 IEVRNTHKDKVPAE------WVRKQTLVNAERYITEELKEYEAKILGAEEKILQLEQELF 517 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 L + + + + +Q+IA +D + A AK + Y +P I+ ++DGRHP++ Sbjct: 518 SKLVLWMNDYIQPVQQNAQLIAQMDCLCSFAQQAKIEQYSKPEIEEGFELQIEDGRHPVI 577 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 EK L S ++ N L D+ ++ ++TGPNM GKS LRQ ALIV+MAQMGS+ Sbjct: 578 EKQLPIGES--YVTNSVLL----DREEQQVIMITGPNMSGKSAILRQTALIVLMAQMGSF 631 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA A+IG+VDK+F+RVG++DN++ G STFMVEM ETA+ILN + +S V+LDEIGRGT Sbjct: 632 VPAKSANIGLVDKIFTRVGASDNISMGESTFMVEMNETANILNNISERSLVLLDEIGRGT 691 Query: 743 ATLDGLSIAWATIEYLHE-TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 +T DG+SIAWA EYLHE +R + L ATH+HEL ++ + R N + V + + ++F Sbjct: 692 STYDGISIAWAISEYLHEHPSRPKTLFATHYHELNEMCDTFSRIKNYNVSVKELQDNVLF 751 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY 843 L K++PG ++HS+GI V K+AG+P V+ RA IL+ E+ + Sbjct: 752 LRKLVPGGSEHSFGIHVAKMAGMPQQVLHRANKILQKLEQTH 793 >gi|294626989|ref|ZP_06705579.1| DNA mismatch repair protein MutS [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598651|gb|EFF42798.1| DNA mismatch repair protein MutS [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 851 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 294/885 (33%), Positives = 479/885 (54%), Gaps = 50/885 (5%) Query: 29 MRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPV 88 M+Q+ KS PD L+F+RMGDFYELF+DDA A+R L ITLT+RG G IPM GVPV Sbjct: 1 MKQFFAAKSDYPDLLLFFRMGDFYELFYDDARKAARLLDITLTQRGSSGGAPIPMAGVPV 60 Query: 89 HTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPT 148 H Y+ +L+ +G +AICEQI P AK LV R VVR+VTPGT+T++ LL Sbjct: 61 HAYEGYLARLVALGESVAICEQIGDPALAK-----GLVERKVVRIVTPGTVTDEALLDER 115 Query: 149 DSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKELSHA 207 LMA++R + + +AW D++ G F ++ + D L ++I R++P E++ +++ Sbjct: 116 RDTLLMAISRSKQGYGLAWADLAGGRFLVNEVDSADALEAEIARLEPAELLVPDED---- 171 Query: 208 EYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAIS 265 + G + V + P FD ++ ++ + + FG AA A + Sbjct: 172 NWPDFLR--GRIGVRRRPPWLFDADSGRRQLLAFFKLHDLSGFGIDDKPCATAAAGALLG 229 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y+++TQ P + E + +++A R +LE+ + G +LL +D ++T Sbjct: 230 YVEETQKQRLPHLTSIAIEVASEAISMNAATRRHLELDTRVDGDTRNTLLGVLDSTVTPM 289 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 GGRL + PL + R ++ I + +++ ++ D+ R L+R+ + Sbjct: 290 GGRLLRRWLHRPLRLRDVLVQRHHAVGTLIDAGADAD-LREAFRALGDLERILTRVALRS 348 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSL---EKTLSSMLSD- 441 P+D + +RDG+ + + D P +L+ L L + T ++S Sbjct: 349 ARPRDFSTLRDGLALLPKVRAILAPLDSP--------RLQTLHAELGEHDATAHLLISAV 400 Query: 442 -DLPTFK-RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 ++P K DGG + G DA LDE R L + + + L+ + + I LK+ +N Sbjct: 401 AEIPPLKLSDGGVIATGYDADLDELRRLSTNADQFLIDLEQRERASSGIATLKVGYNRVH 460 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IE++ A ++ + RQT++N R+ T EL E+++ +A +L E Sbjct: 461 GYYIEISKGQAD------KAPLHYSRRQTLTNAERYITEELKSFEDKVLSARERSLSREK 514 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 +E L +A+ + E L + ++ +D+ A A+ ++ +P +D++ ++ GRH Sbjct: 515 LLYEGLLDALGTELEGLKRCAGALSELDVLAGFAERAQALDWSQPELDSTPCLRIERGRH 574 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE +Q PF ND DL +D+ ++ ++TGPNMGGKST++RQNALIV++A + Sbjct: 575 PVVEAVREQ----PFEPNDLDLH--SDR---RMLVITGPNMGGKSTYMRQNALIVLLAHI 625 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPAS A IG +D++ +R+G+ D+LA G+STFMVEM ET+ IL+ AT QS V++DEIG Sbjct: 626 GSYVPASRAVIGPIDRILTRIGAGDDLARGQSTFMVEMAETSYILHHATPQSLVLMDEIG 685 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS-----LKRFHNATLQVSD 794 RGT+T DGL++A A +L +TNRC L ATH+ ELT L+ + N L + Sbjct: 686 RGTSTYDGLALADAVARHLAQTNRCYTLFATHYFELTALADASHAGGASGIANVHLDAVE 745 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 E ++F+H V G A+ S+G+QV LAGLP +++A L E+ + ++ Sbjct: 746 HGERLVFMHAVKDGPANRSFGLQVAALAGLPKAAVTQARRRLAELEQRGGESHS-AQMAP 804 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + + + E ++ L+ DE++P AL+ LY +KA Sbjct: 805 TALDAPQQFGLFTAPSSAAQEALQALDPDELTPKQALEALYRLKA 849 >gi|313896675|ref|ZP_07830223.1| DNA mismatch repair protein MutS [Selenomonas sp. oral taxon 137 str. F0430] gi|312974592|gb|EFR40059.1| DNA mismatch repair protein MutS [Selenomonas sp. oral taxon 137 str. F0430] Length = 869 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 309/898 (34%), Positives = 481/898 (53%), Gaps = 70/898 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ K +P L+F+R+GDFYE+FFDDA +A++ LG+TLT R L K+ PMCG Sbjct: 7 TPMMQQYLSAKKAHPGELLFFRLGDFYEMFFDDAKIAAKELGLTLTSRSGDLDKN-PMCG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A+ YI +L+ G ++AI EQI P K L R VV++VTPGT + L Sbjct: 66 VPYHAADSYIARLVAKGFKVAIAEQIGDP------KAKGLTPREVVKVVTPGTALLGEEL 119 Query: 146 SPTDSNYLMAVARIRTE-WAIAWIDISTG--IFKISTSNH--DRLISDIMRIDPREIIFS 200 + Y++ + +A+A DISTG + + T + ++ ++ R E++F+ Sbjct: 120 KDAANVYIVLIHETAPGCYALAGADISTGECFYAVYTGDAAVQQIQDELYRRTAAELLFT 179 Query: 201 EKELSHAEYKSLF--ETLGNVAV------AQPNVFFDHSISESRIADYYNITTVDTFGSF 252 E LS A+ F + L + A+ A + H E AD G+ Sbjct: 180 EP-LSVADDVRTFAVQRLPHCAITVVAPDADDELLARHFPPEEIPADA---------GA- 228 Query: 253 SQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSRE 311 +TA AA + Y+ T M + I D + + +D+ NLEI R+L G ++ Sbjct: 229 ----RTAIAALLRYLHATVMADLSQINRLSFLDAAAGMQLDTYTLRNLEITRSLRDGGKK 284 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 +L +D++ T G RL + PL +I+ RLD++ + L ++++L+S Sbjct: 285 HTLFDVLDFTRTPMGTRLLKSWLEHPLLAPHRIDARLDAVAELVSASSLRAKLRELLRSI 344 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIR------DGIRSGINILNLFLKNDLPEELRGAVEKLK 425 D R L+R++ +D+ +R G+R+ ++ L L A E ++ Sbjct: 345 YDFERLLTRIETQAANARDLVALRVSLAALPGVRAALSGAKSRL-------LTRAAEGIE 397 Query: 426 KLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE 485 L + L + + D+ RDGG +R G LDE SK ++ ++ + Sbjct: 398 TF-DDLRELLMAAIVDEPGLSVRDGGIIRMGYSDELDELHRFSHDSKSLLQEMEEHERDR 456 Query: 486 TKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 T IK LKI +N GY+IEV S + + D +I +QT++N RF T EL + E Sbjct: 457 TGIKTLKIGYNKVFGYYIEVRHSGSDRVPAD------YIRKQTLANAERFITEELKEFET 510 Query: 546 RITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPI 605 +I +A + +E F L + + E+ + N +++IA +D+ ++A A Y RP+ Sbjct: 511 KILSAQEKIVALEYSLFAELRDRVKERLVPIQNVARMIARVDVLQSMAEAAASYRYVRPV 570 Query: 606 IDNSTN--FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 I +++ I+KDGRHP+VE+ L++ F+ ND LS + L+TGPNM GK Sbjct: 571 IRPASDGEIIIKDGRHPLVERLLERDL---FVPNDTHLS----HGGTETMLITGPNMAGK 623 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 ST++RQ AL+ +MAQ+GS+VPA A I VD++F+R+G++D+L SG+STFMVEM E A I Sbjct: 624 STYMRQVALLTLMAQVGSFVPARSAEIAPVDRIFTRIGASDDLVSGQSTFMVEMNEVAQI 683 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLK 783 L +AT S VILDEIGRGT+T DG+SIA A +E++ + L ATH+HELT+++ + Sbjct: 684 LREATRDSLVILDEIGRGTSTFDGMSIARAVVEHIDTRIHAKTLFATHYHELTEMAN--E 741 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY 843 R N + V + G++FL +++ G AD SYGI V +LAGLP V RA +IL T E Sbjct: 742 RIRNYCIAVREKGRGVMFLRRIVAGAADKSYGIHVARLAGLPPKVTERAEEILGTLEACA 801 Query: 844 HHNQKDMRLYYPEIQ---TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + PE E S +E+++ L++ M+PL A+ TLY ++ Sbjct: 802 VTQRAAAAAGQPETDLPIAAEEPGMASLFAGGTLEELRGLDVMTMTPLEAMNTLYRLQ 859 >gi|148992081|ref|ZP_01821855.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae SP9-BS68] gi|168489138|ref|ZP_02713337.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae SP195] gi|147929130|gb|EDK80141.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae SP9-BS68] gi|183572226|gb|EDT92754.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae SP195] gi|251766519|gb|ACC61789.1| DNA mismatch repair protein [Streptococcus pneumoniae] gi|251766521|gb|ACC61790.1| DNA mismatch repair protein [Streptococcus pneumoniae] gi|332071510|gb|EGI82003.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA17570] Length = 844 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 293/883 (33%), Positives = 479/883 (54%), Gaps = 58/883 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEISLTSRNKNADNPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI+ G+++AI EQ+E+P +A +V+R VV+++TPGT+ D Sbjct: 67 VPYHSAQQYIDVLIEQGYKVAIAEQMENPKQAV-----GVVKREVVQVITPGTVV-DSSK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEKEL 204 + +N+L+A+ R ++ +A++D+ TG F ++ L+ +I + RE++ +L Sbjct: 121 PDSQNNFLVAIDREGNQFGLAYMDLVTGDFYVTGLLDFTLVCGEIRNLKAREVVLG-YDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E + L + V + F D + + R+A VE+TA++ + Sbjct: 180 SEEEEQILSRQMNLVLSYEKESFEDLHLLDLRLA---------------TVEQTASSKLL 224 Query: 265 SYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 Y+ +TQM KP I Y +I+ L +D A +++L+++ SG ++ SL +D Sbjct: 225 QYVHRTQMRELNHLKPVIRY----EIKDFLQMDYATKASLDLVENARSGKKQGSLFWLLD 280 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL I PL D +I R + + F+ + + + LK D+ R S Sbjct: 281 ETKTAMGMRLLRSWIHRPLIDKERIVQRQEVVQVFLDHFFERSDLTDSLKGVYDIERLAS 340 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G+ PKD+ + + S I + + P L + +L +P+ LE +S+ + Sbjct: 341 RVSFGKTNPKDLLQLATTLSSVPRIRAILEGMEQPT-LAYLIAQLDAIPE-LESLISAAI 398 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + + P DGG +R G D +LD+ R + + IA ++ K E + I LKI +N Sbjct: 399 APEAPHVITDGGIIRTGFDETLDKYRCVLREGTSWIAEIEAKERENSGISTLKIDYNKKD 458 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+ VT+S + F + T+ N RF T EL +E + A + +E Sbjct: 459 GYYFHVTNSQLGNVPA------HFFRKATLKNSERFGTEELARIEGDMLEAREKSANLEY 512 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F + + + + L +Q IA +D+ +LA++A+ Q+ RP + + ++ GRH Sbjct: 513 EIFMRIREEVGKYIQRLQALAQGIATVDVLQSLAVVAETQHLIRPEFGDDSQIDIRKGRH 572 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 +VEK + Q+ +I N ++ + L+TGPNM GKST++RQ A+ +MAQ+ Sbjct: 573 AVVEKVMGAQT---YIPNTIQMA-----EDTSIQLITGPNMSGKSTYMRQLAMTAVMAQL 624 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPA AH+ I D +F+R+G+AD+L SG+STFMVEM+E + ++ AT S ++ DE+G Sbjct: 625 GSYVPAESAHLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELG 684 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A + IEY+HE + L ATH+HELT L SL+ N + + + + Sbjct: 685 RGTATYDGMALAQSIIEYIHEHIGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQV 744 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 FLHK+ PG AD SYGI V K+AGLP +++RA IL E + MR QT Sbjct: 745 TFLHKIEPGPADKSYGIHVAKIAGLPADLLARADKILTQLENQGTESPPPMR------QT 798 Query: 860 KESKNNLSKNDKL----FVEKIKCLNLDEMSPLTALKTLYAVK 898 +S D+ + ++ L++ M+P+ + L +K Sbjct: 799 SAVTEQISLFDRAEEHPILAELAKLDVYNMTPMQVMNVLVELK 841 >gi|163782411|ref|ZP_02177409.1| DNA mismatch repair protein [Hydrogenivirga sp. 128-5-R1-1] gi|159882444|gb|EDP75950.1| DNA mismatch repair protein [Hydrogenivirga sp. 128-5-R1-1] Length = 852 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 291/882 (32%), Positives = 485/882 (54%), Gaps = 66/882 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD-IPMC 84 TPM+ QY K+ P+ L+F+R+GDFYELF+DDA++ SR L + LT R G++ IPMC Sbjct: 9 TPMLAQYHYFKNEYPECLLFFRLGDFYELFYDDAVVGSRELNLVLTSRPAGKGRERIPMC 68 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H+A+ YI++L++ G +IAICEQ+E P +AK +VRR V+R++TPGT E Sbjct: 69 GVPYHSADSYIRRLVQRGFKIAICEQVEDPSKAK-----GIVRREVIRVITPGTHFE--- 120 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 DS L + + + +A++++S G F L+ + + + RE++ + E Sbjct: 121 ---KDSGGLACLHKRGKTYYVAYLNLSVGDFVGGKVQDTELLDFLSKFNIRELLVRKGEE 177 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 AE + + ES A YN T+ F + E A+ Sbjct: 178 VPAEIVKTLNLFLTELEEEFYEEGSELVKESFKA--YNARTL----GFDEEEALLPLGAV 231 Query: 265 -SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 Y+K TQ P I P+ + + ID AR LE+L ++ G ++ SL +D ++T Sbjct: 232 YRYVKLTQKGFTPFIKKPKPFQNEGFVRIDLKARRGLELLESIEGRKDYSLFGVLDRTLT 291 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G G R I +P D +I D++ + +++IL D+ R +S++ Sbjct: 292 GMGRRRLRFHILNPFRDVERIREVQDAVEELFRKEDKRRKLREILSDMADLERLVSKVSS 351 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELR-----------GAVEKLKKLPQSLE 432 P+D+ +++ LF +L EELR G++E L++L + ++ Sbjct: 352 NMASPRDVLHLKN---------TLFKVEELREELRDMDSSLFRDIYGSLESLRELAEEID 402 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 + +L ++ P +DGG +R+G D LDE R +RD +++++ + + EET I +LK Sbjct: 403 R----VLVEEPPVHLKDGGLIREGVDEYLDELRFVRDNARKLLRDYERRLKEETGISSLK 458 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 + +N +GY++EVT + + + F RQT+SN RF T EL LE RI +A + Sbjct: 459 VGYNKVMGYYVEVTKPNLKYVP------EYFRRRQTLSNAERFITDELSRLEERILSAQS 512 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 IE E F L + I + E + +Q++ +D +LA +A ++ + RP +++S + Sbjct: 513 RINEIEYELFVQLRDRINTELERIGRNAQLVGEVDYVQSLAEVAHQRGWVRPEVNDSFDI 572 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 +++GRHP+++ ++ + N+ + L ++TGPNM GKS+++RQ AL Sbjct: 573 RIEEGRHPVIDAFTRRYVPNDTLMNEDEF----------LLVITGPNMAGKSSYIRQVAL 622 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 +V+++ MGS++PA A IG VD +F+R+GS D LA G STFM EM++ A +L+ AT +S Sbjct: 623 LVLLSHMGSFIPAKKASIGNVDAIFTRIGSGDILAMGVSTFMNEMLDVAGMLSNATKKSL 682 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 ++LDEIGRGT+T DG++I+ A +E++ R L+ATHF ELT+L ++ N + V Sbjct: 683 IVLDEIGRGTSTYDGIAISKAIVEHISRELGSRTLVATHFLELTELEGKVRGVKNYHMAV 742 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 S+ G++FL+ ++ G A+ S+GI+V K+AGLP+++I RA +IL + E K + + Sbjct: 743 SEEESGVVFLYTLLEGKAEGSFGIEVAKMAGLPDSLIERAREILMSLE------DKTLPV 796 Query: 853 YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 + E + + L +E+I L++ M+PL AL L Sbjct: 797 LEETFRKSEERIEEKEERSL-MEEILSLDIANMTPLQALVKL 837 >gi|307710940|ref|ZP_07647365.1| DNA mismatch repair protein MutS [Streptococcus mitis SK321] gi|307617241|gb|EFN96416.1| DNA mismatch repair protein MutS [Streptococcus mitis SK321] Length = 844 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 295/883 (33%), Positives = 480/883 (54%), Gaps = 58/883 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEISLTSRNKNADNPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI+ G+++AI EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPYHSAQQYIDVLIEQGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSSK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEKEL 204 + +N+L+A+ R ++ +A++D+ TG F ++ L+ +I + RE++ +L Sbjct: 121 PDSQNNFLVAIDRAGNQFGLAYMDLVTGDFYVTGLLDFTLVCGEIRNLKAREVVLG-YDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E + L + V + F D + +SR+A VE+ A++ + Sbjct: 180 SEEEEQILSRQMNLVLSYEKEGFEDLHLLDSRLA---------------AVEQAASSKLL 224 Query: 265 SYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 Y+ +TQM KP I Y +I+ L +D A +++L+++ SG ++ SL +D Sbjct: 225 QYVHRTQMRELNHLKPVIRY----EIKDFLQMDYATKASLDLVENARSGKKQGSLFWLLD 280 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL I PL D +I R + + F+ + + + LK D+ R S Sbjct: 281 ETKTAMGMRLLRSWIHRPLIDKERIIQRQEVVQVFLDHFFERSDLTDSLKGVYDIERLAS 340 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G+ PKD+ + + S I + + P L + +L +P+ LE +S+ + Sbjct: 341 RVSFGKTNPKDLLQLATTLSSVPRIRAILEGMEQPA-LAYLIAQLDAIPE-LESLISAAI 398 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + + P DGG +R G D +LD+ R + + IA ++ K E + I LKI +N Sbjct: 399 APEAPHVITDGGIIRTGFDETLDKYRRVLREGTSWIAEIEAKERENSGISTLKIDYNKKD 458 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+ VT+S + F + T+ N RF T EL +E + A + +E Sbjct: 459 GYYFHVTNSQLGNVPA------HFFRKATLKNSERFGTEELARIEGDMLEAREKSANLEY 512 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F + + + + L +Q IA +D+ +LA++A+ Q+ RP + + ++ GRH Sbjct: 513 EIFMRIREEVSKYIQRLQVLAQGIATVDVLQSLAVVAETQHLIRPEFGDDSRIDIQKGRH 572 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 +VEK + Q+ +I N ++ + L+TGPNM GKST++RQ A+ V+MAQ+ Sbjct: 573 AVVEKVMGAQT---YIPNTIQMA-----EDTSIQLITGPNMSGKSTYMRQLAMTVVMAQL 624 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPA A++ I D +F+R+G+AD+L SG+STFMVEM+E + ++ AT S ++ DE+G Sbjct: 625 GSYVPAESAYLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELG 684 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A + IEY+HE + L ATH+HELT L SL+ N + + + + Sbjct: 685 RGTATYDGMALAQSIIEYIHEHIGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQV 744 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 FLHK+ PG AD SYGI V K+AGLP +++RA IL E + M+ QT Sbjct: 745 TFLHKIEPGPADKSYGIHVAKIAGLPADLLARADKILTQLENQGPESPDPMK------QT 798 Query: 860 KESKNNLSKNDKLFV----EKIKCLNLDEMSPLTALKTLYAVK 898 +S D V E++ L++ M+P+ A+ L +K Sbjct: 799 STVTEQISLFDTPAVHPILEELAKLDIYNMTPMQAMNVLVELK 841 >gi|325924847|ref|ZP_08186282.1| DNA mismatch repair protein MutS [Xanthomonas perforans 91-118] gi|325544777|gb|EGD16125.1| DNA mismatch repair protein MutS [Xanthomonas perforans 91-118] Length = 851 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 293/885 (33%), Positives = 475/885 (53%), Gaps = 50/885 (5%) Query: 29 MRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPV 88 M+Q+ KS PD L+F+RMGDFYELF+DDA A+R L ITLT+RG G IPM GVPV Sbjct: 1 MKQFFAAKSDYPDLLLFFRMGDFYELFYDDARKAARLLDITLTQRGSSGGAPIPMAGVPV 60 Query: 89 HTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPT 148 H Y+ +L+ +G +AICEQI P AK LV R VVR+VTPGT+T++ LL Sbjct: 61 HAYEGYLARLVALGESVAICEQIGDPALAK-----GLVERKVVRIVTPGTVTDEALLDER 115 Query: 149 DSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKELSHA 207 LMA++R + + +AW D++ G F ++ + D L ++I R++P E++ +++ Sbjct: 116 RDTLLMAISRSKHGYGLAWADLAGGRFLVNEVDSADALEAEIARLEPAELLVPDED---- 171 Query: 208 EYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAIS 265 + G V + P FD ++ ++ + + FG AA A + Sbjct: 172 NWPDFLR--GRTGVRRRPPWLFDADSGRRQLLAFFKLHDLSGFGIDDKPCATAAAGALLG 229 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y+++TQ P + E + +++A R +LE+ + G +LL +D ++T Sbjct: 230 YVEETQKQRLPHLTSIAMEVASEAISMNAATRRHLELDTRVDGDTRNTLLGVLDSTVTPM 289 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 GGRL + PL + R ++ I + +++ ++ D+ R L+R+ + Sbjct: 290 GGRLLRRWLHRPLRLRDVLVQRHHAVGTLIDAGADAD-LREAFRALGDLERILTRVALRS 348 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK------TLSSML 439 P+D + +RDG+ + + D P +L+ L L + L S + Sbjct: 349 ARPRDFSTLRDGLALLPKVRTILAPLDSP--------RLQTLHAELGEHDATAHLLISAV 400 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 ++ P DGG + G DA LDE R L + + + L+ + + I LK+ +N Sbjct: 401 AETPPLKLSDGGVIATGYDAELDELRRLSTNADQFLIDLEQRERASSGIATLKVGYNRVH 460 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IE++ A ++ + RQT++N R+ T EL E+++ +A +L E Sbjct: 461 GYYIEISKGQAE------KAPLHYSRRQTLTNAERYITEELKSFEDKVLSARERSLSREK 514 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 +E L +A+ + E L + ++ +D+ A A+ ++ +P +D++ ++ GRH Sbjct: 515 LLYEGLLDALGTELEGLKRCAGALSELDVLAGFAERAQALDWSQPELDHAPCLRIERGRH 574 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE +Q PF ND DL +D+ ++ ++TGPNMGGKST++RQNALIV++A + Sbjct: 575 PVVEAVREQ----PFEPNDLDLH--SDR---RMLVITGPNMGGKSTYMRQNALIVLLAHI 625 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPAS A IG +D++ +R+G+ D+LA G+STFMVEM ET+ IL+ AT QS V++DEIG Sbjct: 626 GSYVPASRAVIGPIDRILTRIGAGDDLARGQSTFMVEMAETSYILHHATPQSLVLMDEIG 685 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK-----SLKRFHNATLQVSD 794 RGT+T DGL++A A +L +TNRC L ATH+ ELT L+ N L + Sbjct: 686 RGTSTYDGLALADAVARHLAQTNRCYTLFATHYFELTALADESHAGGASGIANVHLDAVE 745 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 E ++F+H V G A+ S+G+QV LAGLP +++A L E+ + ++ Sbjct: 746 HGERLVFMHAVKDGPANRSFGLQVAALAGLPKAAVTQARRRLVELEQRGGESHS-AQMAP 804 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + + + E ++ L+ DE++P AL+ LY +KA Sbjct: 805 TALDAPQQFGLFTAPSSAAQEALQALDPDELTPKQALEALYRLKA 849 >gi|227514527|ref|ZP_03944576.1| DNA mismatch repair protein MutS [Lactobacillus fermentum ATCC 14931] gi|227087084|gb|EEI22396.1| DNA mismatch repair protein MutS [Lactobacillus fermentum ATCC 14931] gi|299782994|gb|ADJ40992.1| DNA mismatch repair protein mutS [Lactobacillus fermentum CECT 5716] Length = 873 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 284/820 (34%), Positives = 453/820 (55%), Gaps = 46/820 (5%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY +K PD+ +FYR+GDFYE+F +DA+ ++ L +TLT R K IPMCGVP Sbjct: 1 MMEQYQRVKDQYPDAFLFYRLGDFYEMFNEDAVKGAQLLELTLTSRSKSKDNPIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 ++Y+ LI G+++AICEQ+E P + K +V+R V RLVTPGT + + Sbjct: 61 HRAVDNYVDILIDKGYKVAICEQMEDP-----KTTKGMVKREVTRLVTPGTTMDLAGDAA 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKELSH 206 +NYL A+ + + + +A+ D+STG K++ SN I++++ + RE++ +E E+S Sbjct: 116 RQNNYLTALKQEQGGYNLAYADLSTGELKVTKVSNEAAAINELVNLQTREVV-TEPEVS- 173 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISY 266 SL + L + + ++++ +A Y + D ++ A +SY Sbjct: 174 ---ASLLDQLTKRNILRSTQ--GQVVNQAEVA-YLSQDLTDAG------QRDVVALLVSY 221 Query: 267 IKKTQMVNKPTIGYPERE---DIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 + TQ K ++ + +R + S + ID ++ NLE+ L SG R+ +L +D + Sbjct: 222 LLTTQ---KRSLAHLQRAVAYQLSSFMKIDHRSKVNLELTTNLRSGKRQGTLAWLLDETK 278 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G RL + + PL D KI R D + + + +Q+ L D+ R R+ Sbjct: 279 TAMGSRLLKQWLDRPLLDQAKIERRYDRVQELLDHYFERQNLQEELIKVYDLERLAGRVA 338 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKTLSSMLS 440 G +D+ ++ + I + D+P ++L A++ L+ + +++ ++ Sbjct: 339 YGSVNGRDLIQLKTSLEQVPKIKYILQTLDVPAFDDLEQALDPLEDVAGLIDRAIAP--- 395 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 + P DGG +RDG + LDE R K+ IA LQ + T I NLKI +N+ G Sbjct: 396 -EPPISVTDGGVIRDGYNHQLDEYRGAMQNGKQWIADLQEQERRATGINNLKIGYNHVFG 454 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IEVT ++ L DR+ +QT+ N RF T EL + E+ I A + + +E E Sbjct: 455 YYIEVTKANIDKL-----PADRYERKQTLVNAERFATPELKEKESLILGAQDKSTALEYE 509 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F + A+ EQ + L + +A +D+ A A +A++ ++ RP +++ ++DGRHP Sbjct: 510 LFVKVREAVKEQIDRLQKLAANLAALDVIQAFAKVAEDYHFVRPSLNHDHQLQIEDGRHP 569 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + Q ++ ND + + L+TGPNM GKST++RQ AL +MAQMG Sbjct: 570 VVEKFMGHQE---YVPNDVLMG-----GDTSILLITGPNMSGKSTYMRQLALTAVMAQMG 621 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 +VPA A + I D++F+R+G+AD+L SG STFMVEM+E + L AT S ++ DEIGR Sbjct: 622 CFVPAKRAQLPIFDQIFTRIGAADDLVSGESTFMVEMMEANNALQNATADSLILFDEIGR 681 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A IE++H + L +TH+HELT L L N + ++ N ++ Sbjct: 682 GTATYDGMALAQAIIEFVHNRVGAKTLFSTHYHELTALEGELDHLQNVHVGATEENGELV 741 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 FLHKV PG AD SYGI V KLAG+P +++RA IL + E Sbjct: 742 FLHKVTPGPADKSYGIHVAKLAGMPTPLLTRANQILTSLE 781 >gi|133950344|gb|ABO44019.1| MutS [Streptococcus pneumoniae] Length = 844 Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust. Identities = 293/883 (33%), Positives = 479/883 (54%), Gaps = 58/883 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEISLTSRNKNADNPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI+ G+++AI EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPYHSAQQYIDVLIEQGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSSK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEKEL 204 + +N+L+A+ R +++ +A++D+ TG F ++ L+ +I + RE++ +L Sbjct: 121 PDSQNNFLVAIDRDGSQFGLAYMDLVTGDFYVTGLLDFTLVCGEIRNLKAREVVLG-YDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E + L + V + F D + +SR+A VE+ A++ + Sbjct: 180 SEEEEQILSRQMNLVLSYEKEGFEDLHLLDSRLAS---------------VEQAASSKLL 224 Query: 265 SYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 Y+ +TQM KP I Y +I+ L +D A +++L+++ SG ++ SL +D Sbjct: 225 QYVHRTQMRELNHLKPVIRY----EIKDFLQMDYATKASLDLVENARSGKKQGSLFWLLD 280 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL I PL D +I R + + F+ + + + LK D+ R S Sbjct: 281 ETKTAMGMRLLRSWIHRPLIDKERIIQRQEVVQVFLDHFFERSDLTDSLKGVYDIERLAS 340 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G+ PKD+ + + S I + + P L + +L +P+ LE +S+ + Sbjct: 341 RVSFGKTNPKDLLQLATTLSSVPRIRAILEGMEQPA-LAYLIAQLDGIPE-LESLISAAI 398 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + + P DGG +R G D +LD+ R + + IA ++ K E + I LKI +N Sbjct: 399 APEAPHVITDGGIIRTGFDETLDKYRRVLREGTGWIAEIEAKERENSGISTLKIDYNKKD 458 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+ VT+S + F + T+ N RF T EL +E + A + +E Sbjct: 459 GYYFHVTNSQLGNVPA------HFFRKATLKNSERFGTEELARIEGDMLEAREKSANLEY 512 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F + + + + L +Q IA +D+ +LA++A+ Q+ RP + + ++ GRH Sbjct: 513 EIFMRIREEVGKYIQRLQALAQGIATVDVLQSLAVVAETQHLIRPEFGDDSQIDIRKGRH 572 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 +VEK + Q+ +I N ++ + L+TGPNM GKST++RQ A+ +MAQ+ Sbjct: 573 AVVEKVMGAQT---YIPNTIQMA-----EDTSIQLITGPNMSGKSTYMRQLAMTAVMAQL 624 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPA AH+ I D +F+R+G+AD+L SG+STFMVEM+E + ++ AT S ++ DE+G Sbjct: 625 GSYVPAESAHLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELG 684 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A + IEY+HE + L ATH+HELT L SL+ N + + + + Sbjct: 685 RGTATYDGMALAQSIIEYIHEHIGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQV 744 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 FLHK+ PG AD SYGI V K+AGLP +++RA IL E + MR QT Sbjct: 745 TFLHKIEPGPADKSYGIHVAKIAGLPADLLARADKILTQLENQGTESPPPMR------QT 798 Query: 860 KESKNNLSKNDKL----FVEKIKCLNLDEMSPLTALKTLYAVK 898 +S D+ + ++ L++ M+P+ + L +K Sbjct: 799 SAVTEQISLFDRAEEHPILAELAKLDVYNMTPMQVMNVLVELK 841 >gi|169832918|ref|YP_001695440.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae Hungary19A-6] gi|238688314|sp|B1I9E5|MUTS_STRPI RecName: Full=DNA mismatch repair protein mutS gi|168995420|gb|ACA36032.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae Hungary19A-6] Length = 844 Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust. Identities = 293/883 (33%), Positives = 478/883 (54%), Gaps = 58/883 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEISLTSRNKNADNPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI+ G+++AI EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPYHSAQQYIDVLIEQGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSSK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEKEL 204 + +N+L+A+ R ++ +A++D+ TG F ++ L+ +I + RE++ +L Sbjct: 121 PDSQNNFLVAIDREGNQFGLAYMDLVTGDFYVTGLLDFTLVCGEIRNLKAREVVLG-YDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E + L + V + F D + + R+A VE+TA++ + Sbjct: 180 SEEEEQILSRQMNLVLSYEKESFEDLHLLDLRLA---------------TVEQTASSKLL 224 Query: 265 SYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 Y+ +TQM KP I Y +I+ L +D A +++L+++ SG ++ SL +D Sbjct: 225 QYVHRTQMRELNHLKPVIRY----EIKDFLQMDYATKASLDLVENARSGKKQGSLFWLLD 280 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL I PL D +I R + + F+ + + + LK D+ R S Sbjct: 281 ETKTAMGMRLLRSWIHRPLIDKERIVQRQEVVQVFLDHFFERSDLTDSLKGVYDIERLAS 340 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G+ PKD+ + + S I + + P L + +L +P+ LE +S+ + Sbjct: 341 RVSFGKTNPKDLLQLATTLSSVPRIRAILEGMEQPT-LAYLIAQLDAIPE-LESLISAAI 398 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + + P DGG +R G D +LD+ R + + IA ++ K E + I LKI +N Sbjct: 399 APEAPHVITDGGIIRTGFDETLDKYRCVLREGTSWIAEIEAKERENSGISTLKIDYNKKD 458 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+ VT+S + F + T+ N RF T EL +E + A + +E Sbjct: 459 GYYFHVTNSQLGNVPA------HFFRKATLKNSERFGTEELARIEGDMLEAREKSANLEY 512 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F + + + + L +Q IA +D+ +LA++A+ Q+ RP + + ++ GRH Sbjct: 513 EIFMRIREEVGKYIQRLQTLAQGIATVDVLQSLAVVAETQHLIRPEFGDDSQIDIRKGRH 572 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 +VEK + Q+ +I N ++ + L+TGPNM GKST++RQ A+ +MAQ+ Sbjct: 573 AVVEKVMGAQT---YIPNTIQMA-----EDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQL 624 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPA AH+ I D +F+R+G+AD+L SG+STFMVEM+E + ++ AT S ++ DE+G Sbjct: 625 GSYVPAESAHLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELG 684 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A + IEY+HE + L ATH+HELT L SL+ N + + + + Sbjct: 685 RGTATYDGMALAQSIIEYIHEHIGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQV 744 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 FLHK+ PG AD SYGI V K+AGLP +++RA IL E + MR QT Sbjct: 745 TFLHKIEPGPADKSYGIHVAKIAGLPADLLARADKILTQLENQGTESPPPMR------QT 798 Query: 860 KESKNNLSKNDKL----FVEKIKCLNLDEMSPLTALKTLYAVK 898 +S D+ + ++ L++ M+P+ + L +K Sbjct: 799 SAVTEQISLFDRAEEHPILAELAKLDVYNMTPMQVMNVLVELK 841 >gi|290968595|ref|ZP_06560133.1| DNA mismatch repair protein MutS [Megasphaera genomosp. type_1 str. 28L] gi|290781248|gb|EFD93838.1| DNA mismatch repair protein MutS [Megasphaera genomosp. type_1 str. 28L] Length = 866 Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust. Identities = 289/900 (32%), Positives = 486/900 (54%), Gaps = 78/900 (8%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+E+K D ++F+R+GDFYE+FF+DAL SR L +TLT R + +PMCG Sbjct: 8 TPMMKQYMEVKERCRDKILFFRLGDFYEMFFEDALTVSRELDLTLTGRAGGNKEKVPMCG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A+ YI++L++ G+++A+CEQ+E P + K +V+R +++++TPGT+T + + Sbjct: 68 VPFHSADTYIERLVQKGYKVAVCEQMEDP-----KAAKGIVKREIIKVITPGTITMEHAV 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG--IFKIS-TSNHDRLISDIMRI-DPREIIFSE 201 + +NYL + + D++TG +++ T + ++ D++ + PRE++ Sbjct: 123 AAKQNNYLACMTASAASVSFVLADVTTGECWWQVCDTDGWESIVGDMVSVYAPRELLLGS 182 Query: 202 KELSHAEYKSLFETL----GNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 L+ A+ + + L GN + +P++ D DY + T + VE Sbjct: 183 --LTAAQKDGIRKILQQREGNCVLTEPDIRTD--------VDYEAVGT-----QYFTVEM 227 Query: 258 TAAAAAISY-----IKKTQMVNKPTIGYPER-EDIQST--LFIDSAARSNLEILRTL-SG 308 AAA A SY + V K I Y E +Q L +D+A +LEI R + G Sbjct: 228 MAAAKAASYCLGLLLSYVTEVMKCDISYFHTLEPLQQEQRLVLDAACLHHLEITRNVRDG 287 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKIL 368 R+ +LL +D++ T GGRL + + +PL T+I R + + +Q+ +L + IL Sbjct: 288 GRKGTLLAVLDHTCTAMGGRLLRKWLETPLLSGTQIMRRQEGVAELVQHSVLRKDVTDIL 347 Query: 369 KSSPDVPRSLSRLKIGRGEPKDIAVIRDGI------RSGINILNLFLKNDLPEELRGAVE 422 + D R L+R++ G PKD +R+ + + + + + DL + E Sbjct: 348 EKIYDFERILTRIETGTVSPKDYVALRESLGVLPTLKQALQQVTSPILRDLIAAVHTHDE 407 Query: 423 KLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L +S+++ ++ R+GG +R+G + LDE R + SK + L+ K Sbjct: 408 VYDLLCRSIKEVPGQVI--------RNGGVIREGFSSELDEIRRIGANSKEFLQELEAKE 459 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T IK +KI + GY+ E++ ++ + + +I +QT+ N R+ T L + Sbjct: 460 RERTGIK-MKIGYTKVFGYYFEISHANTKPVP------EYYIRKQTLVNAERYITPALKE 512 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E ++ A L +E + + I + ++ +A +D +LA+ A+E Y Sbjct: 513 FEVKVLTAQERMLALEYALYGEVRQRIQTHIHDMQETARALAQLDCLHSLAVAAQENRYI 572 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 RP ++ + DGRHPI+E +K + F+ ND L + ++ ++ ++TGPNM G Sbjct: 573 RPQLNGERQIRIVDGRHPIMEHYVK---NALFVPNDVVL----NHDTHEILIITGPNMAG 625 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ A++V+M Q+GS++PA A I VD++F+R+G+ D++ +G+STFM+EM E + Sbjct: 626 KSTYMRQVAVLVLMTQIGSFIPAREASICPVDRIFTRIGATDDILTGQSTFMMEMEEVSH 685 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL AT S +ILDEIGRGT+T DG+SIA A IEY + L ATH+HELTD+S Sbjct: 686 ILQYATQNSLLILDEIGRGTSTFDGMSIARAVIEYCLKKVHALTLFATHYHELTDMSTMS 745 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 K+ N T+ V + I FL ++IPG AD SYG+ V +LAGLP ++ RA IL+ E Sbjct: 746 KKIKNYTVAVKERGRDITFLRRIIPGGADRSYGLHVARLAGLPEGLLKRAEVILQELETA 805 Query: 843 YHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKC----LNLDEMSPLTALKTLYAVK 898 H P + K + + LF + ++++ ++P+ A+ LYA++ Sbjct: 806 EHR---------PCQVSPSEKRDTVGAEGLFANPVLTRLLEVDINGLTPIEAISFLYALQ 856 >gi|313892582|ref|ZP_07826169.1| DNA mismatch repair protein MutS [Dialister microaerophilus UPII 345-E] gi|313118979|gb|EFR42184.1| DNA mismatch repair protein MutS [Dialister microaerophilus UPII 345-E] Length = 852 Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust. Identities = 305/892 (34%), Positives = 490/892 (54%), Gaps = 71/892 (7%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD--I 81 + TP+M QY IK DSL+FYR+GDFYELF+DDA + S L +TLT GK GK+ + Sbjct: 2 AKTPLMAQYQSIKDKYEDSLLFYRLGDFYELFYDDAKVVSHELELTLT--GKSAGKEGRV 59 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H A +YI +LI+ G+++A+CEQ+E P +AK LV+R+V+R++TPGT+ Sbjct: 60 PMCGVPYHAAENYIYRLIQKGYKVAVCEQLEEPKKAK-----GLVKRDVIRVITPGTILF 114 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 + ++ +NYLM + + E + DISTG N + + D+ + Sbjct: 115 ENAIADKSNNYLMYIYEEQGEIVLILSDISTGECSWGIWNAKKELYDMFDM--------- 165 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIA--DYYN-ITTVDTFGSFSQVEKT 258 +S + T+ + + + FF S+ + +Y + I D S ++ + Sbjct: 166 --ISIYQPSETLCTISDEIYEKTDYFFTSSVGGCLLVRKEYTDEIKENDVIYSDNKKVQK 223 Query: 259 AAAAAISYIK---KTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSL 314 A + Y+K K+ V I Y RED L + NLEI + + G R+ +L Sbjct: 224 AFLLLVEYLKDVMKSDSVKFHNI-YKLRED--HVLHLSEKTIRNLEITKNMRDGGRKGTL 280 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L+ +DY+ T GGRL + + PLTD +I R + I + + ++ + S D Sbjct: 281 LELLDYTSTAMGGRLLKKWLEQPLTDVNRIILRQNGIEELRTHATELQKLESLFSSIFDF 340 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIR---------SGINILNLFLKNDLPEELRGAVEKLK 425 R L+R++ PKD+ ++ ++ SG + ++ LKN + ++ K Sbjct: 341 ERILARIEANTTSPKDLLSLKSTLKEIPEIKKVLSGAS--SVILKN-----INSNIKTHK 393 Query: 426 KLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE 485 + + L+K+++ + + RDG ++++G LDE RSL + S++ I L+ E+ Sbjct: 394 FVYELLDKSMNENGTGSI----RDGKYIKNGYSKELDEVRSLAENSRKWITELEKSEKEK 449 Query: 486 TKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 T IK LKI NN GY+ E+T ++ + + ++ +QT+ N R+ T EL + E Sbjct: 450 TGIK-LKIGFNNIFGYYFEITHANK------IPIPEYYVRKQTLVNAERYITPELKEFEA 502 Query: 546 RITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPI 605 ++ A +ELE ++ + I + ++ IA +D LA A ++ Y +P+ Sbjct: 503 KVLVAKEKMSELELELYKDIKKQIYPYIAEMQKTARTIAGLDCLSGLARAALKERYIKPV 562 Query: 606 IDNSTN--FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 I+ S N ++ DGRHP+VE LK + FI ND +L+ N + L ++TGPNM GK Sbjct: 563 IECSKNKHILINDGRHPMVEHALKNEM---FIPNDIELNHVNQE----LLVITGPNMAGK 615 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 STF+RQ A++VIMAQ+GS++PA A I VD++F+RVG+ D++++G+STFMVEM E + I Sbjct: 616 STFMRQVAVLVIMAQIGSFIPAKSAVISPVDRIFTRVGATDDISTGQSTFMVEMQEVSHI 675 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLK 783 L AT S V+LDEIGRGT+T DG+SIA A +EY + L ATH+HEL+D++ + K Sbjct: 676 LKHATENSLVLLDEIGRGTSTYDGMSIAKAVVEYFDKNIHAYTLFATHYHELSDMASTSK 735 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY 843 + N T+ V + E I FL +++PG AD SYGI V +LAGLP +++ +A IL E Sbjct: 736 KIKNFTVTVKERGEEITFLRRIVPGCADRSYGIHVARLAGLPESLLKQASAILDNLES-- 793 Query: 844 HHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 + K + E S+ NL + + ++ L++ +PL A++ L+ Sbjct: 794 -QDNKSLNKTIMEKVENTSEENLFTSS--IINELSTLDVMSKTPLEAMEILF 842 >gi|298528739|ref|ZP_07016143.1| DNA mismatch repair protein MutS [Desulfonatronospira thiodismutans ASO3-1] gi|298512391|gb|EFI36293.1| DNA mismatch repair protein MutS [Desulfonatronospira thiodismutans ASO3-1] Length = 877 Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust. Identities = 289/822 (35%), Positives = 436/822 (53%), Gaps = 42/822 (5%) Query: 33 IEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTAN 92 ++IK PD L+F+RMGDFYELFF+DA A+R L ITLT R + +PMCGVP H Sbjct: 1 MQIKQDYPDCLLFFRMGDFYELFFEDAETAARELQITLTARNPNAELKVPMCGVPYHACE 60 Query: 93 HYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNY 152 Y+++L++ GH++A+C+Q+E P AK LV+R V R++TPGT+ ED L ++NY Sbjct: 61 EYLRQLLEKGHKVAVCDQVEDPGAAK-----GLVKREVTRVLTPGTVVEDSSLEARENNY 115 Query: 153 LMAV--ARIRTEWAIAWIDISTGIFK-ISTSNHDRLISDIMRIDPREIIFSEKELSHAEY 209 L A+ R +AW + STG + + N D L + +I+P EI+ ++ + Sbjct: 116 LGALFWDTSRGRGGLAWAEFSTGEWTGLELKNEDELWQWLQKINPSEILVAQGYEPPRAH 175 Query: 210 KSLFETLGNVAVAQPNVFFDHSISES--RIADYYNITTVDTFGSFSQVEKTAAAAAISYI 267 L + V + F S E R ++ +D V A A + Y+ Sbjct: 176 VGLQPRINFVPAG--SYFEPRSAREMILRSQQAVSLQVLDLEDKPCLVR--ACGAILMYM 231 Query: 268 KKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR-EQSLLKTIDYSITGAG 326 +T + + ++ L++D NLE+ RTL G + +LL +D ++T G Sbjct: 232 VQTHKKELTHLASFKPMNLTRYLYLDEVTIRNLELFRTLGGQKGPGTLLHVLDRTLTPMG 291 Query: 327 GRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRG 386 R R+ P + IN +++ ++ L ++ L + D+ R +R+ + R Sbjct: 292 ARYLQTRLRQPWKEPGPINDNQQTVDCLYKDNNLRELLRLELDQAYDLERLNTRIALNRC 351 Query: 387 EPKDIAV------IRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 PKD+A I GI+ + + D P + +E + Q L TL L Sbjct: 352 NPKDLAALLRSLQILPGIKKALQGMQ-----DKPGLVNKTLENWDDM-QDLCFTLEKALV 405 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 ++ P +GG R G D+ LDE L D + + L K + + LK+ +N G Sbjct: 406 ENPPHLITEGGIFRSGYDSRLDELIELTDHGESKLKELLEKERTQNDLPKLKLGYNRVFG 465 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+ E++ + + + F RQT+++ R+ T EL DLEN + +A E++ Sbjct: 466 YYFELSRAVKDSVP------EHFQRRQTLASSERYLTPELKDLENSMLSAAEQRKSREMD 519 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F L + + S +A ID LA A+E N+ RP++ +K GRHP Sbjct: 520 LFGELRQFVAGHGSRMKKMSACLARIDYWQGLASAAREWNWSRPVLSKDIGMQIKKGRHP 579 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +E Q ++ ND L P ++ L+TGPNM GKST LRQ A+I I+AQMG Sbjct: 580 AIEAI---QGRSGYVPNDMYLEDPT-----RILLITGPNMAGKSTVLRQTAIIAILAQMG 631 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA A IG+ D++FSRVG++DNLA G+STFMVEM ETA IL QAT +S VILDEIGR Sbjct: 632 SFVPAREASIGLCDRIFSRVGASDNLAQGQSTFMVEMTETARILRQATRRSLVILDEIGR 691 Query: 741 GTATLDGLSIAWATIEYLHETNR-CRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 GT+T DGL++AWA +E L + R L ATH+HELT L + N + V + + I Sbjct: 692 GTSTYDGLALAWAVVEELARKHEGIRTLFATHYHELTKLEQEFSVLKNYNIAVKEWKKEI 751 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 +FL +++PG AD SYGI+V +LAG+P+ V+ RA +IL+ E+ Sbjct: 752 VFLRRLVPGPADKSYGIEVARLAGVPDRVVDRARNILEDLER 793 >gi|238019355|ref|ZP_04599781.1| hypothetical protein VEIDISOL_01219 [Veillonella dispar ATCC 17748] gi|237864054|gb|EEP65344.1| hypothetical protein VEIDISOL_01219 [Veillonella dispar ATCC 17748] Length = 877 Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust. Identities = 300/894 (33%), Positives = 490/894 (54%), Gaps = 46/894 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TPMM QY++IKS + L+F+R+GDFYELF DDAL+ASR L ITLT R + P Sbjct: 3 KKQTPMMEQYLDIKSRYSEELLFFRLGDFYELFNDDALIASRELNITLTGRPTGDEERTP 62 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP H A YI+ L+K G+++AICEQ+E P + K +V+R+V++++TPGT+ + Sbjct: 63 MCGVPFHAAESYIETLVKKGYKVAICEQLEDP-----KAVKGIVKRDVIKVITPGTVMTE 117 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTG--IFKISTSNHDR--LISDIMRIDPREII 198 +N+L ++ W + + D+STG I+ T R + + P EII Sbjct: 118 NGNDARSNNFLALFYMVKDAWILVFSDVSTGEVIWHRITDCEKRSDMFDALSMYRPSEII 177 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK- 257 E + + K + + V P F ++ +A+ V FG +E+ Sbjct: 178 LPEGTVLPQDIKDFMDNQFSNIVLSP---FSTYHTQREVAE----KAVTHFGDLGLMEED 230 Query: 258 --TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSL 314 A + Y++ I Y + + + L +D+++ +LEI L G ++ +L Sbjct: 231 VWEALGYMLLYLEDIIKSEISHINYVHQLSVGNRLILDTSSLRHLEITHNLRDGGQKGTL 290 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D ++T G RL + + SPLTD +I R ++ I + I+ +L D Sbjct: 291 LDVLDRTLTPMGARLLKQWLESPLTDVNQIQRRQAAVAELITRGAERSHIRSLLDCIYDF 350 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R + R++ G P+D+ +R+ + +I N+ + ++ + + + Sbjct: 351 ERIVGRVETGSVSPRDLTALRESLAVLPDIKNVL--STCASLSLTSINDCIQDHKDIYDL 408 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L ++D ++G ++DG + LDE RSL S++ +A ++ E T + +K Sbjct: 409 LCRAIADQPALTLKEGRVIKDGFNPDLDELRSLATNSEQWLAKMEADIKEATGLSKIKTG 468 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+ EV+ S K + D FI +QT++N R+ T EL + E +I +A + Sbjct: 469 YNKVFGYYFEVSHS------KSEQVPDYFIRKQTLANAERYITPELKEFEIKILSAKDKI 522 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E E ++ L N I + + ++ +A +D+ +LA++ E+NY P I + + Sbjct: 523 IALEYELYQQLRNDIKLVIKDVQETARALAELDVLGSLALVGYEENYICPTIVMNGQINI 582 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 +DGRHP++EK LK++ F+ ND L+ +++ L+TGPNM GKST++RQ A+++ Sbjct: 583 RDGRHPVIEKFLKREV---FVPNDIFLNHDDEE----FLLITGPNMAGKSTYMRQAAILM 635 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMAQ+GS++PA A I VD++F+RVG++D++++G+STFMVEM E A IL AT+ S +I Sbjct: 636 IMAQIGSFIPAREASISPVDRIFTRVGASDDISTGQSTFMVEMKEVAYILENATHNSLII 695 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDEIGRGT+T DGLSIA A +E++ + + L ATH+HEL L +S + N T+ V + Sbjct: 696 LDEIGRGTSTFDGLSIAQAVVEHICKHIHGKTLFATHYHELICLEESYSKLKNYTVAVKE 755 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM--RL 852 + + FL ++I G AD SYGI V +LAGLPN+V+ RA IL++ E H+ D+ R+ Sbjct: 756 KGKDVAFLRRIIKGGADRSYGIHVARLAGLPNSVLKRAEVILESLED-QSHDASDLNNRV 814 Query: 853 Y--YPEIQTKESKNNLSKN--DKLFVEKI--KCLNLDEMS--PLTALKTLYAVK 898 P K + +S + LF + L +D MS P+ AL LY ++ Sbjct: 815 IGGQPTNVVKPTTKQVSDSPLGNLFTHSVVDSLLEVDVMSMTPIEALNKLYELQ 868 >gi|255068039|ref|ZP_05319894.1| DNA mismatch repair protein MutS [Neisseria sicca ATCC 29256] gi|255047727|gb|EET43191.1| DNA mismatch repair protein MutS [Neisseria sicca ATCC 29256] Length = 874 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 311/900 (34%), Positives = 465/900 (51%), Gaps = 66/900 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM+QY+ IKS + D LVFYRMGDFYELF DDA+ A++ L ITLT RG+ G I M G Sbjct: 7 SPMMQQYLAIKSQHADKLVFYRMGDFYELFLDDAVEAAKLLDITLTTRGQMDGVPIKMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A Y+ +L+K+G +A+CEQ+ + K V R VVR+VTPGTLT+ L Sbjct: 67 VPFHAAEQYLARLVKMGKSVAVCEQV-----GEVGAGKGPVERKVVRIVTPGTLTDAAFL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 ++N + AV + AIAW + +G FK + D+L ++ R+ EI+ E Sbjct: 122 EDKETNRIAAVNADKKHIAIAWASLQSGEFKTKLTTADKLADELARLQAAEILLPEG--- 178 Query: 206 HAEYKSL---FETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG---SFSQVEKTA 259 KSL F+T + F + +Y+ + FG + A Sbjct: 179 ----KSLPDGFQTTSANITRLNSWQFAADAGAKLLTEYFGCQDLHGFGLDGKEHEAAVGA 234 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A A ++YI+ TQ + + E + +D+A R NLEI +TLSG + +L +D Sbjct: 235 AGALLNYIRLTQNLMPQHLDGISLETDSQYIGMDAATRRNLEITQTLSGKKSPTLFSILD 294 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 T G RL A + PL I R +++ +Q LK+ D+ R + Sbjct: 295 GCATHMGSRLLALWLHHPLRSRAHIRARQEAVAALGSQ---YENLQGRLKNIADIERIAA 351 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL-PQSL--EKTLS 436 R+ +G P+D+A +RD + + I +L E +E LK + P++L +TL Sbjct: 352 RIAVGNARPRDLAALRDSLFALSEI-------ELSAEGSSLLETLKAVFPETLPVAETLK 404 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + + + + +DGG + G A LDE R +++ + L+ + E T + LK++ N Sbjct: 405 AAVMPEPAVWLKDGGVINQGYCAELDEFRHIQNHGDEFLLDLEARERERTGLSTLKVEFN 464 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 G++IE++ A D + RQT+ N RF T EL E+++ A AL Sbjct: 465 RVHGFYIELSKVQAEQAPAD------YQRRQTLKNAERFITPELKTFEDKVLTAQEQALA 518 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E FE L I L A++ A +D+ A A E+ + P + +++ Sbjct: 519 LEKRLFEALLKDIQTTLPQLQKAAKAAAALDVLSTFAATAAERGFVCPEFADYPVIHIEN 578 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE+ ++ F AN L + +L LLTGPNMGGKST++RQ A IV+M Sbjct: 579 GRHPVVEQQVRH-----FTANHTRLD-----HKHRLMLLTGPNMGGKSTYMRQVAHIVLM 628 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A GS+VPA A IG +D++F+R+G++D+LAS RSTFMVEM ETA IL+ AT+QS V++D Sbjct: 629 AHTGSFVPADAAQIGPIDQIFTRIGASDDLASNRSTFMVEMSETAYILHHATDQSLVLMD 688 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 E+GRGT+T DGL++A A E+L + N+ L ATH+ ELT L ++ N L + Sbjct: 689 EVGRGTSTFDGLALAHAIAEHLLQKNKSFSLFATHYFELTKLPEAHATAVNMHLSALEQG 748 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY--- 853 + I+FLH + PG A SYGI V KLAGLPN + A L E + + ++ Sbjct: 749 QDIVFLHHIEPGPASKSYGIAVAKLAGLPNRALKAAQKHLDELEAQAAAVRPQLDIFSTL 808 Query: 854 -----YPEI----------QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 Y QT S+ N + L E + + D+++P AL LY +K Sbjct: 809 SSENEYSGFSPNETADIAPQTAASQENNPAHHAL-AEALNQIRPDDLTPREALDALYRLK 867 >gi|227499535|ref|ZP_03929642.1| DNA mismatch repair protein MutS [Anaerococcus tetradius ATCC 35098] gi|227218414|gb|EEI83665.1| DNA mismatch repair protein MutS [Anaerococcus tetradius ATCC 35098] Length = 868 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 295/826 (35%), Positives = 463/826 (56%), Gaps = 46/826 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG--KDIPM 83 TPM++ Y+++K+ DS++ YR+GDFYE FFDDA++ S+ L +TLT GK G K PM Sbjct: 11 TPMLKHYVDVKNDFRDSILLYRVGDFYESFFDDAIITSKALSLTLT--GKDCGHEKKAPM 68 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVP H + Y KL+K G+++A+C+Q+E P EAK LV+R + R++TPGT+T+ + Sbjct: 69 CGVPHHVIDSYAFKLVKQGYKVALCDQVEDPKEAK-----GLVKRAITRVITPGTITDME 123 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTG------IFKISTSNHDRLISDIMRIDPREI 197 L ++NYL+++ + +I++ DISTG I +S+S + I I RI+P EI Sbjct: 124 SLDNRENNYLLSLFQNDYGLSISYCDISTGKLVCLEIKGLSSSLAKKAIDQIERINPSEI 183 Query: 198 IFSEKELSHAEYKSLF---ETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 + + + S K F E N + P + + + S I ++ T + + Sbjct: 184 LINS-DFSDNVLKRYFNDNEIFLNY-IENPKDYLNRA---SMIKNHLGETNFKKISNM-R 237 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQS 313 + + A I YI K N I E +I + +++ R NLE+ R L+ ++E + Sbjct: 238 LAILSLANLIDYIYKYHKDNLSHINNIEVLEINDYMQLEANTRRNLELHRNLNNNTKENT 297 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T G RL E + PL D KIN RLD + F+++ IL N I IL D Sbjct: 298 LLSILDKADTVMGSRLINEYLERPLIDRDKINRRLDIVESFLEDRILSNNISNILSDVYD 357 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R ++++ R +D I++ I + + L L+ E +R L + E Sbjct: 358 LERLIAKISYKRANARDFISIKNSI-ANMPKLREILEASESEHIRNIALNLPDVSDIYE- 415 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE---TKIKN 490 + + DD P +GG ++D + LD SL+ SK + L L EE T IKN Sbjct: 416 LIDKAIVDDPPLGISEGGIIKDKYNTELD---SLKIASKNAQSDLILYENEEKEKTAIKN 472 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 KI N N GY IE+T ++ + K+ ++ +QT+ N R+T+ L ++ N I Sbjct: 473 YKIVFNKNNGYSIEITKANLDKVPKN------YVRKQTLKNQERYTSERLEEIANIILGG 526 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 + +E + F + I+ + L ++++A+ID A +A E +Y RP + + Sbjct: 527 KDKLNELEYKIFSNIREKILANTIKLQALAKMLAMIDALNTFAKIALENSYVRPKLRDDN 586 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 +KDGRHP++E LK+ FI ND D+ + ++TGPNM GKST++RQ Sbjct: 587 IIKIKDGRHPVIENNLKENE---FIPNDTDIGS----RENLIQIITGPNMAGKSTYMRQM 639 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 A+I+I+AQ+GS+VPA I I D++F+R+G++DN++ G STFM+EM E ++IL +T Sbjct: 640 AIIIILAQIGSFVPAKACEISICDQVFTRIGASDNISKGESTFMLEMNEVSNILKNSTKD 699 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 SFVILDE+GRGT++ DGLSIA A +EYL + + + + ATHFHELT L L+ N + Sbjct: 700 SFVILDEVGRGTSSDDGLSIAMAIVEYLSKHKKVKTVFATHFHELTILEDELENVTNLKI 759 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 ++ + N ++FL K+ G +D SYGI+V KL+GLPN +I A I+ Sbjct: 760 EILEENNNLVFLRKIKKGKSDRSYGIEVAKLSGLPNEIIDNAKIIM 805 >gi|311068227|ref|YP_003973150.1| DNA mismatch repair protein MutS [Bacillus atrophaeus 1942] gi|310868744|gb|ADP32219.1| DNA mismatch repair protein MutS [Bacillus atrophaeus 1942] Length = 860 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 290/896 (32%), Positives = 493/896 (55%), Gaps = 59/896 (6%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + S TPM++QY++IK+ + D+ +F+R+GDFYE+FFDDA AS+ L ITLT R I Sbjct: 1 MASYTPMIQQYLKIKAEHKDAFLFFRLGDFYEMFFDDAKKASQELEITLTSRDGGAADKI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A YI++LIK G+++AICEQ E P + K +V+R VV+L+TPGT+ + Sbjct: 61 PMCGVPYHSAAAYIEQLIKKGYKVAICEQTEDP-----KAAKGVVKREVVQLITPGTVMD 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGI-FKISTSNHDRLISDIMRIDPREIIFS 200 + + T++N++ +V + +A D++TG + + +IS+I + RE++ S Sbjct: 116 GKGIHETENNFIASVTAFPNGYGLALSDLTTGENLTVFIKRIEDVISEIYSVGAREVVVS 175 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 L L E G + + ++ RI + + + +F ++ Sbjct: 176 SS-LEEQTVVQLKERCG------ATISIEDGETDERIEIAEQLKSQELMTTFMRL----- 223 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 +Y+K+TQ + + + +++ + ID ++ NLE+ T+ S +++ SLL +D Sbjct: 224 ---YTYLKRTQKRSLDHLQSVQVYELEEAMKIDLYSKRNLELTETIRSKNKKGSLLWLLD 280 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T GGRL + I PL + +I R + + I + +++ LK D+ R Sbjct: 281 ETKTAMGGRLLKQWIDRPLIRAGQIEERQEMVETLIAHLFEREDLRERLKEVYDLERLAG 340 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 R+ G +D+ +++ ++ I +L L + + +E ++ + + Q LE+ L Sbjct: 341 RVAFGNVNARDLIQLKESLKQVPAIKDLVASLNHKMAKERAERIDSCEDVLQLLEEALH- 399 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + P ++G ++DG + LDE R K IA L+ + E T I++LK+ N Sbjct: 400 ---EKPPLSLKEGNLMKDGYNQKLDEYRDASKNGKDWIARLERQEREYTGIRSLKVGFNK 456 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IEVT ++ +L+ R+ +QT++N R+ T EL + E I A N+ + Sbjct: 457 VFGYYIEVTKANLHLLEDG-----RYERKQTLTNAERYITPELKEKEALILEAENNICEL 511 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E E F L I L ++ ++ +D A +++ ++Y +P+ + + V DG Sbjct: 512 EYELFAELREKIKMYIPRLQKLAKQMSELDALQCFATISENRHYIKPVF-SEDHVEVIDG 570 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VEK + S+ ++ N+C++ S ++ L+TGPNM GKST++RQ ALI I+A Sbjct: 571 RHPVVEKVM---DSQEYVPNNCEMG-----ESSQMLLITGPNMSGKSTYMRQIALISILA 622 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+G +VPA A + I D++F+R+G+AD+L SG+STFMVEM+E + + AT S ++ DE Sbjct: 623 QIGCFVPAKKAVLPIFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIVNATKNSLILFDE 682 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGT+T DG+++A A IEY+H+ + L +TH+HELT L + L + N ++ + N Sbjct: 683 IGRGTSTYDGMALAQAIIEYVHDHIGAKTLFSTHYHELTVLEEKLSQLKNVHVRAEEYNG 742 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 ++FLH++ G AD SYGI V +LA LP+ +I+RA DILK E + ++ P+ Sbjct: 743 TVVFLHQIKEGAADKSYGIHVAQLAELPDDLIARAQDILKELENT--GTKPELPAQEPKS 800 Query: 858 QTKESKNNLSKNDK---------------LFVEKIKCLNLDEMSPLTALKTLYAVK 898 KE LS D+ ++ K +NL +M+PL A+ +Y ++ Sbjct: 801 AVKEKPAQLSFFDEGEKPAEKSKLSKKEKQVLDTFKSINLLDMTPLEAMNEMYKLQ 856 >gi|324995817|gb|EGC27728.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK678] Length = 849 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 293/887 (33%), Positives = 479/887 (54%), Gaps = 61/887 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYPDAFLLFRMGDFYELFYDDAVNAAQILEISLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI L++ G+++AI EQ+E P EAK +V+R VV+++TPGT+ + Sbjct: 67 VPYHSAQQYIDVLVESGYKVAIAEQMEDPKEAK-----GVVKREVVQVITPGTVVDS--- 118 Query: 146 SPTDS--NYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEK 202 S DS N+L+A+ + + +A++D+ TG F++++ L+ +I + RE++ Sbjct: 119 SKPDSANNFLVALDYSDSLYGLAYMDLVTGEFQVTSLEDFSLVCGEIRNLKAREVVLG-- 176 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS-FSQVEKTAAA 261 +L E V Q N+ S ++ + D V G S +E+ AA Sbjct: 177 -------YTLPEAEEQVLAGQMNLLL--SYVQTALDD------VQLLGEELSPMERQAAG 221 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT-LSGSREQSLLKTIDY 320 + Y+ +TQM + + +I+ L +D A +++L++ SG + SL +D Sbjct: 222 KLLEYVHRTQMRELSHLKKAQHYEIKDFLQMDYATKASLDLTENGRSGKKHGSLYWLMDE 281 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGR+ I PL D +I+ R + + F+ + + + + LK D+ R SR Sbjct: 282 TKTAMGGRMLRSWIQRPLIDEARISQRQNVVEVFLDHFFERSDLMESLKGVYDIERLASR 341 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + G+ PKD+ + + + + L+ L +E L +P+ L +SS +S Sbjct: 342 VSFGKTNPKDLLQLAATL-GNVPQIKAILQGIGSPHLARLIEGLDPIPE-LAGLISSAIS 399 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D P +G +R G D +LD+ R + + IA L++K + I NLKI +N G Sbjct: 400 PDAPHIITEGNIIRTGFDETLDQYRLVLREGTGWIAELEVKERANSSISNLKIDYNKKDG 459 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+ VT+S + + F + T+ N RF T EL +E + A + +E E Sbjct: 460 YYFHVTNSQLTHVPS------HFFRKATLKNSERFGTEELARIEGEMLEAREKSANLEYE 513 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F + + + L +Q +A +D+ + A +A++Q+ RP+ ++ GRH Sbjct: 514 IFMRIREEAGKYIQRLQALAQTLAAVDVLQSFAAVAEQQHLVRPVFTAERRLQIEKGRHA 573 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + QS +I N L D + L+TGPNM GKST++RQ A+IVIMAQMG Sbjct: 574 VVEKVMGAQS---YIPNSILLDQKTD-----IQLITGPNMSGKSTYMRQLAIIVIMAQMG 625 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 SYVPA A + + D +F+R+G+AD+L SG+STFMVEM+E + QA+ +S ++ DE+GR Sbjct: 626 SYVPAQSASLPLFDAIFTRIGAADDLVSGQSTFMVEMMEANRAIRQASERSLILFDELGR 685 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A IE++H + L ATH+HELT L SL+ N + + + + Sbjct: 686 GTATYDGMALAQAIIEHIHHYTGAKTLFATHYHELTALEDSLEHLENVHVATLEKDGQVT 745 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP-EIQT 859 FLHK+ PG AD SYGI V K+AGLP ++ RA IL H +D L ++ Sbjct: 746 FLHKIEPGPADKSYGIHVAKIAGLPEKLLERADSILS------HLESQDTALGSELPAES 799 Query: 860 KESKNNLSKNDKLFVE--------KIKCLNLDEMSPLTALKTLYAVK 898 +++++ +++ LF E +++ L++ M+PL + + +K Sbjct: 800 RQTRSQVAEQMSLFAEGTENPVLTELRDLDIYNMTPLEVMAAVAELK 846 >gi|306828748|ref|ZP_07461940.1| DNA mismatch repair protein MutS [Streptococcus mitis ATCC 6249] gi|304428926|gb|EFM32014.1| DNA mismatch repair protein MutS [Streptococcus mitis ATCC 6249] Length = 844 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 294/883 (33%), Positives = 477/883 (54%), Gaps = 58/883 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYVDIKKQYPDAFLLFRMGDFYELFYEDAINAAQILEISLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI+ G+++AI EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPYHSAQQYIDVLIEQGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSSK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEKEL 204 + +N+L+A+ R ++ +A++D+ TG F ++ L+ +I + RE++ +L Sbjct: 121 PDSQNNFLVALDRDGNQFGLAYMDLVTGDFYVTGLLDFTLVCGEIRNLKAREVVLG-YDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E + L + V + VF D + +SR+A VE+ AA+ + Sbjct: 180 SEEEEQILSRQMNLVLSHEKEVFEDIHLLDSRLA---------------AVEQAAASKLL 224 Query: 265 SYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 Y+ +TQM KP I Y +I+ L +D A +++L+++ SG ++ SL +D Sbjct: 225 QYVHRTQMRELNHLKPVIHY----EIKDFLQMDYATKASLDLVENARSGKKQGSLFWLLD 280 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL I PL D +I R + + F+ + + + LK D+ R S Sbjct: 281 ETKTAMGMRLLRSWIHRPLIDKERIVQRQEVVQVFLDHFFERSDLTDSLKGVYDIERLAS 340 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G+ PKD+ + + S I + + P L + +L +P+ LE +S+ + Sbjct: 341 RVSFGKTNPKDLLQLATTLSSVPRIRAILEGMEQPA-LAYLIAQLDAIPE-LESLISAAI 398 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + + P +GG +R G D +LD+ R + + IA ++ K E + I LKI +N Sbjct: 399 APEAPHVITEGGIIRTGFDETLDKYRRVLREGTSWIAEIEAKERENSGISTLKIDYNKKD 458 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+ VT+S + F + T+ N RF T EL +E + A + +E Sbjct: 459 GYYFHVTNSQLGNVPA------HFFRKATLKNSERFGTEELARIEGDMLEAREKSANLEY 512 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F + + + + L +Q IA +D+ +LA++A+ Q+ RP + ++ GRH Sbjct: 513 EIFMRIREEVSKYIQRLQALAQGIATVDVLQSLAVVAETQHLIRPEFGEDSQIDIQKGRH 572 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 +VEK + Q+ +I N ++ + L+TGPNM GKST++RQ A+ +MAQ+ Sbjct: 573 AVVEKVMGAQT---YIPNSIQMA-----EDTSIQLITGPNMSGKSTYMRQLAMTAVMAQL 624 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPA AH+ I D +F+R+G+AD+L SG+STFMVEM+E + ++ AT S ++ DE+G Sbjct: 625 GSYVPAESAHLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANNAISHATKDSLILFDELG 684 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A + IEY+HE + L ATH+HELT L LK N + + + + Sbjct: 685 RGTATYDGMALAQSIIEYIHEHIGAKTLFATHYHELTSLESILKNLVNVHVATLEQDGQV 744 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 FLHK+ PG AD SYGI V K+AGLP +++RA IL E + MR +T Sbjct: 745 TFLHKIEPGPADKSYGIHVAKIAGLPAELLARADKILTQLENQGTESPAPMR------ET 798 Query: 860 KESKNNLSKND----KLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +S D + ++ L++ M+P+ A+ L +K Sbjct: 799 SAVTEQMSLFDAPAEHPILAELAKLDVYNMTPMQAMNVLVELK 841 >gi|307705747|ref|ZP_07642592.1| DNA mismatch repair protein MutS [Streptococcus mitis SK597] gi|307620665|gb|EFN99756.1| DNA mismatch repair protein MutS [Streptococcus mitis SK597] Length = 844 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 294/883 (33%), Positives = 478/883 (54%), Gaps = 58/883 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEISLTSRNKNADNPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI+ G+++AI EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPYHSAQQYIDVLIEQGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSSK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEKEL 204 + +N+L+A+ R ++ +A++D+ TG F ++ L+ +I + RE++ +L Sbjct: 121 PDSQNNFLVAIDRDGNQFGLAYMDLVTGDFYVTGLFDFTLVCGEIRNLKAREVVLG-YDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E + L + V + F D + +SR+A VE+ A++ + Sbjct: 180 SEEEEQILSRQMNLVLSYEKEGFEDFHLLDSRLA---------------AVEQAASSKLL 224 Query: 265 SYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 Y+ +TQM KP I Y +I+ L +D A +++L+++ SG ++ SL +D Sbjct: 225 QYVHRTQMRELNHLKPVIRY----EIKDFLQMDYATKASLDLVENARSGKKQGSLFWLLD 280 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL I PL D +I R + + F+ + + LK D+ R S Sbjct: 281 ETKTAMGMRLLRSWIHRPLIDKERIVQRQEVVQVFLDYFFERSDLTDSLKGVYDIERLAS 340 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G+ PKD+ + + S I + + P L +E+L +P+ LE +S+ + Sbjct: 341 RVSFGKTNPKDLLQLAITLSSVPRIRAILEGMEQPA-LTYLIEQLDGIPE-LESLISAAI 398 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + + P +GG +R G D +LD+ R + + IA ++ K E + I LKI +N Sbjct: 399 APEAPHVITEGGIIRTGFDETLDKYRRVLREGTGWIAEIEAKERENSGISTLKIDYNKKD 458 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+ VT+S + F + T+ N RF T EL +E + A + +E Sbjct: 459 GYYFHVTNSQLGNVPA------HFFRKATLKNSERFGTEELARIEGDMLEAREKSANLEY 512 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F + + + + L +Q IA +D+ +LA++A+ Q+ RP + + ++ GRH Sbjct: 513 EIFMRIREEVSKYIQRLQALAQGIATVDVLQSLAVVAETQHLIRPEFGDDSRIDIQKGRH 572 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 +VEK + Q+ +I N ++ + L+TGPNM GKST++RQ A+ +MAQ+ Sbjct: 573 AVVEKVMGAQT---YIPNTIQMA-----KDTSIQLITGPNMSGKSTYMRQLAMTAVMAQL 624 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPA AH+ I D +F+R+G+AD+L SG+STFMVEM+E + ++ AT S ++ DE+G Sbjct: 625 GSYVPAESAHLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELG 684 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A + IEY+HE + L ATH+HELT L SL+ N + + + + Sbjct: 685 RGTATYDGMALAQSIIEYIHEHIGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQV 744 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 FLHK+ PG AD SYGI V K+AGLP +++RA IL E + MR QT Sbjct: 745 TFLHKIEPGPADKSYGIHVAKIAGLPADLLARADKILTQLESQGGESPSLMR------QT 798 Query: 860 KESKNNLSKNDKL----FVEKIKCLNLDEMSPLTALKTLYAVK 898 +S D + ++ L++ M+P+ A+ L +K Sbjct: 799 SAVTEQISLFDTTEEHPILAELAKLDVYNMTPMQAMNVLVELK 841 >gi|296107398|ref|YP_003619098.1| DNA mismatch repair protein MutS [Legionella pneumophila 2300/99 Alcoy] gi|295649299|gb|ADG25146.1| DNA mismatch repair protein MutS [Legionella pneumophila 2300/99 Alcoy] Length = 839 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 289/824 (35%), Positives = 463/824 (56%), Gaps = 49/824 (5%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY+ IK+ PD L+FYRMGDFYELFFDDA AS+ L +TLT RG+ K IPM GVP Sbjct: 1 MMQQYLRIKTDYPDMLLFYRMGDFYELFFDDAKRASQLLDLTLTHRGQSADKPIPMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H +Y+ +L+K G +AICEQI P +K V R V R++TPGT+T++ LL Sbjct: 61 YHAVENYLARLLKKGESVAICEQIGDP-----ATSKGPVERQVTRIITPGTVTDEALLDA 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEKELS 205 N L+A+ + + IAW+D+ G F + T H +L ++++R+ P E++ E Sbjct: 116 RKDNILLAIHTQKQKIGIAWVDLGGGRFHLQELTEEH-QLNAELVRLQPAELLCKES--- 171 Query: 206 HAEYKSLFETLGNVAVA-QPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAAAAA 263 L N AV +P FD S + + + +++T + FG + AA A Sbjct: 172 ----TPLPSFCSNFAVKFRPGWEFDASNAHKLLCEQFSVTDLSAFGEQNYPTALIAAGAL 227 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 ++Y+K TQ + P + E + L +D++ + +LE+ + G E LL +D + Sbjct: 228 LAYLKTTQKQSLPHLTTLTLEQSEDYLQLDASTQKHLELFENIHGGGEHCLLFILDKTAC 287 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSIN--FFIQNPILINPIQKILKSSPDVPRSLSRL 381 G RL + PL I TR +I F+Q + + +++K DV R +SR+ Sbjct: 288 AMGSRLLKRWLGKPLKQHAIIQTRQQAIKEIIFLQQDV---SLHQLIKQCADVERIVSRI 344 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKK---LPQSLEKTLS 436 + P+D+ S + L L + ++L E + ++KK L++ L Sbjct: 345 ALKSARPRDLV-------SLLQTLTLLPAIHDELQENKSLLINEIKKEISPLTLLQQLLE 397 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + + D+ P RDGG + G D LDE R+L + + L+ + T + LK+ +N Sbjct: 398 TAIIDNPPMLIRDGGVIAPGFDEELDELRNLSSNAHETLVKLEQEEKNRTGLSTLKLGYN 457 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 + G++IE++ + A + F +QT+ N+ R+ T EL E+++ +A + AL Sbjct: 458 SVQGFYIELSKAQAQ------NAPPHFHRKQTLKNVERYITPELKLFEDKVLSAQSKALA 511 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 E ++ L I + L + ++ +A +D+ + LA A+ N+ P + + +++ Sbjct: 512 REKWLYDNLLEEIQQYIPELSDLAKSLAQLDVLVTLAERAQSLNWNCPNLVPESGIMIQA 571 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP++E L+++ FIAND +L PN + L+TGPNMGGKST++RQ ALIV++ Sbjct: 572 GRHPVIEPLLQER----FIANDLELK-PNQN----MLLITGPNMGGKSTYMRQTALIVLL 622 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 A +GS+VPA +G +D++F+R+G++D+L+SGRSTFMVEM ETA IL QAT+QS V++D Sbjct: 623 AHIGSFVPADKVTLGPLDRIFTRIGASDDLSSGRSTFMVEMTETAQILRQATSQSLVLID 682 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DG+++A+A+ +L T + L +TH+ ELT+L K N LQ S Sbjct: 683 EIGRGTSTYDGMALAYASCAFLASTIKAYTLFSTHYLELTELPKEFSCIRNVHLQASIKT 742 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 I+FL++V G A+ SYG++V +LAG+P V+ A++ L + Sbjct: 743 GQIVFLYRVEEGCANRSYGLEVAELAGIPKEVLKLAHEHLNQIQ 786 >gi|167754512|ref|ZP_02426639.1| hypothetical protein CLORAM_00013 [Clostridium ramosum DSM 1402] gi|167705344|gb|EDS19923.1| hypothetical protein CLORAM_00013 [Clostridium ramosum DSM 1402] Length = 836 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 291/883 (32%), Positives = 475/883 (53%), Gaps = 67/883 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM QY+ IK N DS+V +R+GDFYE+FFDDA++ S+ L I LT + + +PMCG Sbjct: 6 SPMMMQYLSIKEENQDSIVMFRLGDFYEMFFDDAIMVSKELEIALTGKNAGAPERVPMCG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A+ YIQKL+ GHR+AI EQ+ P G + +V R VV+++TPGT+ D+ L Sbjct: 66 VPFHSASGYIQKLVDNGHRVAIVEQLTEP------GKRGIVERGVVQIITPGTIF-DESL 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 + +NY+ A+ + +A+ DI+TG F + + I+ +E Sbjct: 119 TNNKNNYIAALEEFDFTYTLAFCDITTGEFSV------------VNIEKKE--------- 157 Query: 206 HAEYKSLFETLGNVAVAQ----PNVF--FDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 K L L +AV + PN FD +S D YN F + +++ Sbjct: 158 ----KLLLNQLETMAVKEIVTLPNQIREFDDILSSPFAHDNYNEKYDKIFSKINDLKQIK 213 Query: 260 AAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKT 317 A+ + +Y+ TQ + E + + + +D + LE+ + S + SL Sbjct: 214 TASLLLNYLLDTQKRELEHLQIIEEINNEDYVRMDLYTKKALELTSSAKSNDKYGSLFWL 273 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D + T G R+ + I PL + +I RLD + F + I I++ILK D+ R Sbjct: 274 LDQTKTAMGSRMLKQWIERPLINQEQIEERLDIVEIFTNHFIQRESIKEILKDIYDLERL 333 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 SR+ G +D+ I ++ + N L D P L A+ + + Sbjct: 334 SSRIAFGNINARDLKWISSSLKVVPELKNQLLSLDEP--LISALADHFTDLSHITNLIDQ 391 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + D+ P ++G +++G + LDE R +RD K+ +A + ++T IK LK+ +N Sbjct: 392 AIVDNPPLTVKEGNLIKEGFNEELDELRYIRDHGKQWLAQFEQNERDKTGIKGLKVGYNR 451 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IEVT + S++K + + +Q++SN RF T EL ++E+++ +A + + + Sbjct: 452 VFGYYIEVTKGNLSLVKDEF----NYTRKQSLSNAERFVTPELKEMESKLLSAQDKMIKL 507 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E F + N I + ++ + +++IA ID+ +LA+++ E +Y RP +++ F V DG Sbjct: 508 EYALFTEIRNYIKKDVHAIQDVAKIIAKIDVFQSLAMISSENSYVRPTFNHNKVFKVVDG 567 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RH ++E+ + Q + +++ND ++ N + L+TGPNMGGKST++R ALI +M Sbjct: 568 RHGVIERVMAQGT---YVSNDVNIDAAN-----PVMLITGPNMGGKSTYMRTIALIALMG 619 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+G +VP S A I I D++F+R+G++D+L SG+STFMVEM+E + L AT S +I DE Sbjct: 620 QIGCFVPCSEACIPIFDQIFTRIGASDDLISGQSTFMVEMLEANNALRFATENSLIIFDE 679 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGTAT DG++IA A IEY+ +C L +TH+HELT L + N S N+ Sbjct: 680 IGRGTATFDGMAIAQAMIEYIAAKIKCITLFSTHYHELTFLEEKNLGIKNVHASASIEND 739 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK--LYHHNQKDMRLYYP 855 ++FL+++ PG ++ SYG+ V KLA LP+ V++RA +L+ E+ + HH D P Sbjct: 740 DLVFLYRIKPGRSNKSYGVNVAKLAKLPDAVLNRANVLLEALEENNIEHHLSDDTLKEAP 799 Query: 856 EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + L D + +SP+ AL TL +K Sbjct: 800 PVTVSVVEKYLEGIDPM-----------ALSPIDALSTLIELK 831 >gi|325479392|gb|EGC82488.1| DNA mismatch repair protein MutS [Anaerococcus prevotii ACS-065-V-Col13] Length = 868 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 288/819 (35%), Positives = 460/819 (56%), Gaps = 40/819 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG--KDIPM 83 TPM++ Y+++K+ DS++ YR+GDFYE FFDDA++ S+ L +TLT GK G K PM Sbjct: 11 TPMLKHYVDVKNDFKDSILLYRVGDFYETFFDDAIITSKVLSLTLT--GKECGHNKKAPM 68 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVP H ++Y KL+K G+++A+C+QIE P EAK LV+R + R++TPGT+T+ + Sbjct: 69 CGVPHHVIDNYAYKLVKHGYKVALCDQIEDPKEAK-----GLVKRAITRVITPGTITDME 123 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTG------IFKISTSNHDRLISDIMRIDPREI 197 L+ ++NYL+++ + + ++++ DISTG I +S+S R I I +I+P EI Sbjct: 124 SLNKKENNYLLSLFQNKYGLSLSYCDISTGKLVTLEIRGMSSSIGRRAIDQIEKINPSEI 183 Query: 198 IFSEKELSHAEYKSLF---ETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 + + + KS F E N + P D+ I D+ I + + Sbjct: 184 LINS-DYDDNVLKSYFNDNEVFVNY-IQNPK---DYKSRAKLIEDHLGIANLKKISDL-R 237 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQS 313 + + A I YI K N I E +I + + ++++ R NLE+ R L+ ++E S Sbjct: 238 LSIISLANLIDYIYKYHKDNLTHINNIEILEINNYMQLEASTRKNLELHRNLNNNTKENS 297 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T G R+ E + PL D +I RLD + + + IL I L D Sbjct: 298 LLSILDKADTVMGSRMINEYLERPLIDKVQIEKRLDIVETLLNDSILSTNISNYLSDIYD 357 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R ++++ R +D+ I++ I + I L L N + ++ + + + Sbjct: 358 LERLVAKISYKRANARDLISIKNSIYN-IPKLKEILVNHDDQNIKNIGINIPDIDFIYDL 416 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 S++SD P +GG +R G D SLDE + L ++ + + + T IKN KI Sbjct: 417 IDISIVSDP-PIAITEGGMIRKGYDKSLDELKELSSSAQSKLIEYENSEKKATGIKNYKI 475 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N N GY IE+T S+ + ++ +QT+ N R+TT L ++ I + Sbjct: 476 VYNKNNGYSIEITKSNLDKVPS------SYVRKQTLKNQERYTTETLEEISELILGGKDK 529 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 +E E F+ + + I++ + L +++IA ID A +A++ Y RP I Sbjct: 530 INNLEYEIFKKVRDEILKNTIKLQALAKMIANIDTLNTFAKIARDNAYVRPEIRTDNLIK 589 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +KD RHP++E L + FI ND D+ ++ + ++TGPNM GKST++RQ A+I Sbjct: 590 IKDSRHPVIENNLNENE---FIPNDTDIG----EDDNLIQIITGPNMAGKSTYMRQMAII 642 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +I+AQMGS+VPA+ A I I D++F+R+G++DN++ G STFM+EM E +SIL +T SFV Sbjct: 643 IILAQMGSFVPATSAQISICDQVFTRIGASDNISKGESTFMLEMNEVSSILKNSTENSFV 702 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ILDE+GRGT++ DGLSIA A +EYL + + + + ATHFHELT + L N +++ Sbjct: 703 ILDEVGRGTSSDDGLSIAMAIVEYLSKKKKVKTVFATHFHELTIMENELDNVKNLKIEIL 762 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 + N ++FL K+ G +D SYGI+V KL+GLP+ VI A Sbjct: 763 EENNNLVFLRKIKKGKSDRSYGIEVAKLSGLPDEVIENA 801 >gi|237733849|ref|ZP_04564330.1| DNA mismatch repair protein mutS [Mollicutes bacterium D7] gi|229383187|gb|EEO33278.1| DNA mismatch repair protein mutS [Coprobacillus sp. D7] Length = 837 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 291/883 (32%), Positives = 475/883 (53%), Gaps = 67/883 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM QY+ IK N DS+V +R+GDFYE+FFDDA++ S+ L I LT + + +PMCG Sbjct: 7 SPMMMQYLSIKEENQDSIVMFRLGDFYEMFFDDAIMVSKELEIALTGKNAGAPERVPMCG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A+ YIQKL+ GHR+AI EQ+ P G + +V R VV+++TPGT+ D+ L Sbjct: 67 VPFHSASGYIQKLVDNGHRVAIVEQLTEP------GKRGIVERGVVQIITPGTIF-DESL 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 + +NY+ A+ + +A+ DI+TG F + + I+ +E Sbjct: 120 TNNKNNYIAALEEFDFTYTLAFCDITTGEFSV------------VNIEKKE--------- 158 Query: 206 HAEYKSLFETLGNVAVAQ----PNVF--FDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 K L L +AV + PN FD +S D YN F + +++ Sbjct: 159 ----KLLLNQLETMAVKEIVTLPNQIREFDDILSSPFAHDNYNEKYDKIFSKINDLKQIK 214 Query: 260 AAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKT 317 A+ + +Y+ TQ + E + + + +D + LE+ + S + SL Sbjct: 215 TASLLLNYLLDTQKRELEHLQIIEEINNEDYVTMDLYTKKALELTSSAKSNDKYGSLFWL 274 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D + T G R+ + I PL + +I RLD + F + I I++ILK D+ R Sbjct: 275 LDQTKTAMGSRMLKQWIERPLINQEQIEERLDIVEIFTNHFIQRESIKEILKDIYDLERL 334 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 SR+ G +D+ I ++ + N L D P L A+ + + Sbjct: 335 SSRIAFGNINARDLKWISSSLKVVPELKNQLLSLDEP--LISALADHFTDLSHITNLIDQ 392 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + D+ P ++G +++G + LDE R +RD K+ +A + ++T IK LK+ +N Sbjct: 393 AIVDNPPLTVKEGNLIKEGFNEELDELRYIRDHGKQWLAQFEQNERDKTGIKGLKVGYNR 452 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IEVT + S++K + + +Q++SN RF T EL ++E+++ +A + + + Sbjct: 453 VFGYYIEVTKGNLSLVKDEF----NYTRKQSLSNAERFVTPELKEMESKLLSAQDKMIKL 508 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E F + N I + ++ + +++IA ID+ +LA+++ E +Y RP +++ F V DG Sbjct: 509 EYALFTEIRNYIKKDVHAIQDVAKIIAKIDVFQSLAMISSENSYVRPTFNHNKVFKVVDG 568 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RH ++E+ + Q + +++ND ++ N + L+TGPNMGGKST++R ALI +M Sbjct: 569 RHGVIERVMAQGT---YVSNDVNIDAAN-----PVMLITGPNMGGKSTYMRTIALIALMG 620 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+G +VP S A I I D++F+R+G++D+L SG+STFMVEM+E + L AT S +I DE Sbjct: 621 QIGCFVPCSEACIPIFDQIFTRIGASDDLISGQSTFMVEMLEANNALRFATENSLIIFDE 680 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGTAT DG++IA A IEY+ +C L +TH+HELT L + N S N+ Sbjct: 681 IGRGTATFDGMAIAQAMIEYIAAKIKCITLFSTHYHELTFLEEKNLGIKNVHASASIEND 740 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK--LYHHNQKDMRLYYP 855 ++FL+++ PG ++ SYG+ V KLA LP+ V++RA +L+ E+ + HH D P Sbjct: 741 DLVFLYRIKPGRSNKSYGVNVAKLAKLPDAVLNRANVLLEALEENNIEHHLSDDTLKEAP 800 Query: 856 EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + L D + +SP+ AL TL +K Sbjct: 801 PVTVSVVEKYLEGIDPM-----------ALSPIDALSTLIELK 832 >gi|298373253|ref|ZP_06983242.1| DNA mismatch repair protein MutS [Bacteroidetes oral taxon 274 str. F0058] gi|298274305|gb|EFI15857.1| DNA mismatch repair protein MutS [Bacteroidetes oral taxon 274 str. F0058] Length = 896 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 293/889 (32%), Positives = 483/889 (54%), Gaps = 43/889 (4%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 + TP+M+Q+ EIK PD+L+ +R+GDFYE F +DA+ A+ LGITLTKR + + Sbjct: 29 ADTPLMKQHKEIKEKYPDALLLFRVGDFYETFAEDAVKAASILGITLTKRQNGAAAHVEL 88 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G P H + Y+ KL++ G R+A+C+Q+E P + K+LV+R V LVTPG T D Sbjct: 89 AGFPHHALDTYLPKLVRAGLRVAVCDQLEDP-----KLTKTLVKRGVTELVTPGVSTNDN 143 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 +L+ ++N+L AV + + I+++DISTG F +S + + P+E+++ K Sbjct: 144 VLAVGENNFLCAVHFDKNQVGISFLDISTGEFYLSQGSLEYAEKLFNSFAPKEVLYERKN 203 Query: 204 LSHAEYKSLFETLGNVAVA---QPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK--- 257 + LFE +A Q + + + R+ + + + FG VE Sbjct: 204 ------RKLFEETLPTKIAKFEQDDWVYTIESARDRLFKQFEVNSFKGFG----VEHLTC 253 Query: 258 --TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA A + Y+ +T+ I R + +++D NLE+L + +L Sbjct: 254 GIIAAGAILYYLDQTEHKQISHITKISRIEGSHYVWLDRFTIRNLELLDS-PDDEHNTLF 312 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T G RL + PL + I RL + F +NP + I++ L D+ Sbjct: 313 AVLDRNKTPMGSRLMRRWLTFPLKEVKPITDRLSVVTHFYRNPEQRSIIEESLDKIGDLE 372 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R LS++ +GR P+++ + +++ I + + E+L + +EK Sbjct: 373 RILSKVAVGRINPREMWQLMTALKAIKPIKATCTETTDNLIMASFGEQLNECNTLIEKIK 432 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 ++ D T + GG + G DA LDE R + K + + + + T I ++KI + Sbjct: 433 REIVEDPPATLAK-GGVIASGVDAELDELRKISSSGKSYLQQILERESAATGIPSMKINY 491 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+IEVT++ KD + +I RQT+++ R+ T EL + E +I A L Sbjct: 492 NQVFGYYIEVTNA-----HKD-KVPQTWIRRQTLTSAERYITEELKEYETKILGAEEKIL 545 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E F L +++ + ++ ++A ID ++ +++E Y PI+++ST ++ Sbjct: 546 SLEQRIFNALISSVSQFIATIQLDCNILAQIDCLLSFTRISQENRYNCPIVNDSTTIDIR 605 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP++EK L S ++ ND L D + ++ ++TGPNM GKS LRQ ALIV+ Sbjct: 606 QGRHPVIEKNLPIGES--YVPNDILL----DDENQQIIIITGPNMAGKSALLRQTALIVL 659 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+G YVPA A IGIVDK+F+RVG++DN+ASG STFMVEM E ASILN +++S ++ Sbjct: 660 MAQIGCYVPAESASIGIVDKIFTRVGASDNIASGESTFMVEMNEAASILNNISDRSLILF 719 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRG--LLATHFHELTDLSKSLKRFHNATLQVS 793 DE+GRGT+T DG+SIAWA +EY+HE +CR L ATH+HEL ++ +S +R N + V Sbjct: 720 DELGRGTSTYDGISIAWAIVEYIHEMPKCRAKTLFATHYHELNEMERSYRRIKNYNVSVR 779 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 + + ++F+ K++ G ++HS+GI V K+AG+P +VI RA +IL E + + Sbjct: 780 EVDGKVLFIRKLVRGGSEHSFGIHVAKIAGMPPSVIKRADEILLQLENSQRQSDSVGKSM 839 Query: 854 YPEIQTKESKNNLSKNDKLFVEKIK----CLNLDEMSPLTALKTLYAVK 898 Q + L + D + +I+ L+++ ++P+ AL L ++K Sbjct: 840 KNASQRAGIQMTLFELDDPVLSQIRDEILKLDINSLAPIDALNKLNSIK 888 >gi|289167055|ref|YP_003445322.1| DNA mismatch repair protein hexA [Streptococcus mitis B6] gi|288906620|emb|CBJ21454.1| DNA mismatch repair protein hexA [Streptococcus mitis B6] Length = 844 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 295/883 (33%), Positives = 479/883 (54%), Gaps = 58/883 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEISLTSRNKNADNPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI+ G+++AI EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPYHSAQQYIDVLIEQGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSSK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEKEL 204 + +N+L+A+ R +++ +A++D+ TG F ++ L+ +I + RE++ +L Sbjct: 121 PDSQNNFLVAIDRDGSQFGLAYMDLVTGDFYVTGLLDFTLVCGEIRNLKAREVVLG-YDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E L + V + F D + +SR+A VE+ A++ + Sbjct: 180 SEEEELILSRQMNLVLSYEKEGFEDLHLLDSRLA---------------AVEQAASSKLL 224 Query: 265 SYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 Y+ +TQM KP I Y +I+ L +D A +++L+++ SG ++ SL +D Sbjct: 225 QYVHRTQMRELNHLKPVIRY----EIKDFLQMDYATKASLDLVENARSGKKQGSLFWLLD 280 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL I PL D +I R + + F+ + + + LK D+ R S Sbjct: 281 ETKTAMGMRLLRSWIHRPLIDKERIIQRQEVVQVFLDHFFERSDLTDSLKGVYDIERLAS 340 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G+ PKD+ + + S + + L+ L +E+L +P+ LE +S+ + Sbjct: 341 RVSFGKTNPKDLLQLAITL-SSVPRIRAILEGMEQSALTYLIEQLDGIPE-LESLISAAI 398 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + + P DGG +R G D LD+ R + + IA ++ K E + I LKI +N Sbjct: 399 APEAPHVITDGGIIRTGFDEILDKYRRVLREGASWIAEIEAKERENSGISTLKIDYNKKD 458 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+ VT+S + F + T+ N RF T EL +E + A + +E Sbjct: 459 GYYFHVTNSRLENVPA------HFFRKATLKNSERFGTEELARIEGDMLEAREKSANLEY 512 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F + + + + L +Q IA +D+ +LA++A+ Q+ RP + + ++ GRH Sbjct: 513 EIFMRIREEVSKYIQRLQALAQGIATVDVLQSLAVVAETQHLIRPEFGDDSQIDIQKGRH 572 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 +VEK + Q+ +I N ++ + L+TGPNM GKST++RQ A+ +MAQM Sbjct: 573 AVVEKVMGAQT---YIPNTIQMA-----EDISIQLITGPNMSGKSTYMRQLAMTAVMAQM 624 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPA AH+ I D +F+R+G+AD+L SG+STFMVEM+E + ++ AT S ++ DE+G Sbjct: 625 GSYVPAESAHLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELG 684 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A + IEY+HE + L ATH+HELT L SL+ N + + + + Sbjct: 685 RGTATYDGMALAQSIIEYIHEHIGAKTLFATHYHELTSLESSLEHLVNVHVATLEQDGQV 744 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 FLHK+ PG AD SYGI V K+AGLP +++RA IL E + + P QT Sbjct: 745 TFLHKIEPGPADKSYGIHVAKIAGLPADLLARADKILTQLEN------QGIESPVPMKQT 798 Query: 860 KESKNNLSKNDKL----FVEKIKCLNLDEMSPLTALKTLYAVK 898 +S D +E++ L++ M+P+ A+ L +K Sbjct: 799 STVTEQISLFDTAEEHPILEELAKLDIYNMTPMQAMNVLVELK 841 >gi|168486892|ref|ZP_02711400.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae CDC1087-00] gi|183570158|gb|EDT90686.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae CDC1087-00] Length = 844 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 292/883 (33%), Positives = 478/883 (54%), Gaps = 58/883 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEISLTSRNKNADNPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI+ G+++AI EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPYHSAQQYIDVLIEQGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSSK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEKEL 204 + +N+L+++ R ++ +A++D+ TG F ++ L+ +I + RE++ +L Sbjct: 121 PDSQNNFLVSIDREGNQFGLAYMDLVTGDFYVTGLLDFTLVCGEIRNLKAREVVLG-YDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E + L + V + F D + + R+A VE+TA++ + Sbjct: 180 SEEEEQILSRQMNLVLSYEKESFEDLHLLDLRLA---------------TVEQTASSKLL 224 Query: 265 SYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 Y+ +TQM KP I Y +I+ L +D A +++L+++ SG ++ SL +D Sbjct: 225 QYVHRTQMRELNHLKPVIRY----EIKDFLQMDYATKASLDLVENARSGKKQGSLFWLLD 280 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL I PL D +I R + + F+ + + + LK D+ R S Sbjct: 281 ETKTAMGMRLLRSWIHRPLIDKERIVQRQEVVQVFLDHFFERSDLTDSLKGVYDIERLAS 340 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G+ PKD+ + + S I + + P L + +L +P+ LE +S+ + Sbjct: 341 RVSFGKTNPKDLLQLATTLSSVPRIRAILEGMEQPA-LAYLIAQLDAIPE-LESLISAAI 398 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + + P DGG +R G D +LD+ R + + IA ++ K E + I LKI +N Sbjct: 399 APEAPHVITDGGIIRTGFDETLDKYRCVLREGTSWIAEIEAKERENSGISTLKIDYNKKD 458 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+ VT+S + F + T+ N RF T EL +E + A + +E Sbjct: 459 GYYFHVTNSQLGNVPA------HFFRKATLKNSERFGTEELARIEGDMLEAREKSANLEY 512 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F + + + + L +Q IA +D+ +LA++A+ Q+ RP + + ++ GRH Sbjct: 513 EIFMRIREEVGKYIQRLQALAQGIATVDVLQSLAVVAETQHLIRPEFGDDSQIDIRKGRH 572 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 +VEK + Q+ +I N ++ + L+TGPNM GKST++RQ A+ +MAQ+ Sbjct: 573 AVVEKVMGAQT---YIPNTIQMA-----EDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQL 624 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPA AH+ I D +F+R+G+AD+L SG+STFMVEM+E + ++ AT S ++ DE+G Sbjct: 625 GSYVPAESAHLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELG 684 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A + IEY+HE + L ATH+HELT L SL+ N + + + + Sbjct: 685 RGTATYDGMALAQSIIEYIHEHIGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQV 744 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 FLHK+ PG AD SYGI V K+AGLP +++RA IL E + MR QT Sbjct: 745 TFLHKIEPGPADKSYGIHVAKIAGLPADLLARADKILTQLENQGTESPPPMR------QT 798 Query: 860 KESKNNLSKNDKL----FVEKIKCLNLDEMSPLTALKTLYAVK 898 +S D+ + ++ L++ M+P+ + L +K Sbjct: 799 SAVTEQISLFDRAEEHPILAELAKLDVYNMTPMQVMNVLVELK 841 >gi|222110289|ref|YP_002552553.1| DNA mismatch repair protein Muts [Acidovorax ebreus TPSY] gi|221729733|gb|ACM32553.1| DNA mismatch repair protein MutS [Acidovorax ebreus TPSY] Length = 884 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 290/892 (32%), Positives = 471/892 (52%), Gaps = 40/892 (4%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 E + + TPMM QY+ +K+ +PD+L+ YRMGDFYELF+ DA A+R L ITLT+RG+ G Sbjct: 13 EADFSNHTPMMAQYLALKAQHPDTLLLYRMGDFYELFYADAEKAARLLDITLTQRGQSAG 72 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + + M GVP H +Y+ +LIK+G +AI EQ+ + K V R VVR+VTPGT Sbjct: 73 QPVTMAGVPFHALENYLGRLIKMGESVAIAEQV-----GEVGAAKGPVERKVVRVVTPGT 127 Query: 139 LTEDQLLSPTDSNYLMAVAR-IRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREI 197 LT+ +LLS + L+AV + R +AW+ ++ G+ +++ + + + RI P E+ Sbjct: 128 LTDSELLSDKSESMLLAVHQGARARCGLAWLSVTQGVVQLAECAQADVGTWLARIAPSEV 187 Query: 198 IFS-------EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG 250 I+S E++L+ +F ++ +P+ FD ++ E ++ ++ ++ + Sbjct: 188 IYSAGITQRFEEQLTQLRQGGVFTCPMSL---RPDWQFDGALGERKLLEHLGAASLQAWN 244 Query: 251 SFSQVEKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS 309 + + AAAAA+ Y + TQ + + + + A R NLE+++TL G Sbjct: 245 AEALPHAHAAAAALLQYAEHTQGRALTHVHGVRVQQSDELIHLPLATRRNLELVKTLRGE 304 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI-- 367 +L +D +TG G RL + P D + RL + P Q + Sbjct: 305 DAPTLFSLLDTCMTGMGSRLLKTWLLEPRRDRSDARQRLAATAALRGAGSGQGPWQLLRS 364 Query: 368 -LKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK 426 L+ DV R +R+ + + P+++ + ++ L L + PE + + Sbjct: 365 ELRGVSDVERITARIALRQVRPRELVALCKTLQKAEL---LALNSQAPEPFLAQIFSHLQ 421 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 P L + + ++ RDGG + G DA LDE R +++ + L+ + T Sbjct: 422 PPVDCAALLRAAILEEPAALVRDGGVIAPGFDAELDELRGIQNNCDDFLLDLETREKART 481 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 I NL+++ N G++IEVTSS A + +D + RQT+ N RF T EL E++ Sbjct: 482 GIPNLRVQFNKVHGFYIEVTSSHADKVPED------YRRRQTLKNAERFITPELKTFEDK 535 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 +A L E +E + + + L +Q +A +D+ LA + N+C P Sbjct: 536 ALSAQERGLAREKWLYEQVLDQLQPHVPQLTRLAQALATLDVLCTLAERSLTLNWCAPQF 595 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 N ++ GRHP+VE L + SS FI N L + ++ ++TGPNMGGKST+ Sbjct: 596 VNEPCIDIEAGRHPVVEARLAETSSGAFIPNHTRLHA-----NARMQIITGPNMGGKSTY 650 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ ALIV++A MGS+VPA+ +G +D + +R+G+AD+LA+ +STFM+EM E A IL+ Sbjct: 651 MRQVALIVLLASMGSHVPAAACRLGPIDAIHTRIGAADDLANAQSTFMLEMTEAAQILHA 710 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT S V++DEIGRGT+T DGL++A +LH+ R L ATH+ ELT+L+ Sbjct: 711 ATPHSLVLMDEIGRGTSTFDGLALASGIATHLHDKTRAFTLFATHYFELTELAARHPHAV 770 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN 846 N + ++S I+FLH++ PG A SYGIQV KLAG+P V+ A L E+ + Sbjct: 771 NVHVGATESGHDIVFLHEIQPGPASRSYGIQVAKLAGVPAAVLHHARHTLAALEERAGED 830 Query: 847 QKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + L+ P + + +S + + ++ D++SP AL LY +K Sbjct: 831 ELQVDLFAPPPAPEVA--TVSPVESALAQ----IHPDQLSPREALDALYQLK 876 >gi|313206711|ref|YP_004045888.1| DNA mismatch repair protein muts [Riemerella anatipestifer DSM 15868] gi|312446027|gb|ADQ82382.1| DNA mismatch repair protein MutS [Riemerella anatipestifer DSM 15868] gi|315023780|gb|EFT36782.1| DNA mismatch repair protein MutS [Riemerella anatipestifer RA-YM] gi|325335850|gb|ADZ12124.1| Mismatch repair ATPase (MutS family) [Riemerella anatipestifer RA-GD] Length = 863 Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust. Identities = 299/889 (33%), Positives = 501/889 (56%), Gaps = 48/889 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL-GKDI 81 K TP+M+QY IK+ D+++ +R+GDFYE F DA+ S+ LGI LTKR G+ I Sbjct: 5 KKETPLMQQYNSIKAKYSDAILLFRVGDFYETFGADAIKTSQILGIVLTKRNNGGDGQSI 64 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 + G P H+ + Y+ KL++ G R+AIC+Q+E P + K +V+R V LVTPG Sbjct: 65 ELAGFPHHSLDSYLPKLVRAGLRVAICDQLEDP-----KLVKGIVKRGVTELVTPGVTFN 119 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 DQ+L+ +N+L+A+ + + ++ +A +DISTG F + N ++L+ I +P EII+ Sbjct: 120 DQVLNSKKNNFLLALHKEKEKYGVALVDISTGEFLLGEGNLEKLLHIINTFEPSEIIYQR 179 Query: 202 KEL--SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKT 258 + S + KS+F+ + F + + ++ ++ ++ FG ++ T Sbjct: 180 TQEIPSQVKNKSVFKM--------EDWAFQYHFAYEKLTQHFKTNSLKGFGVEDHKLGIT 231 Query: 259 AAAAAISYIKKT---QMVNKPT-IGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSL 314 AA A +Y+ + ++N T I +ED L +D NLE++ + +SL Sbjct: 232 AAGAIFAYLVEDTHHNLLNHITQIKLIPQEDY---LMMDQFTLRNLEVVFP-AHQNGKSL 287 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L ID + T GGRL R+ PL +IN RL + F L + LK D+ Sbjct: 288 LDIIDKTATPMGGRLLRRRLILPLKSVNEINRRLSLVEFLNNEEQLRLDVATRLKGISDL 347 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R + +L + PK++ +R + I +L + P+ L + L L + + T Sbjct: 348 DRLMGKLAAEKISPKELGYLRQSLVYISEIKSLL--HQYPDVL-AWLNPLNHLEEVI-NT 403 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L + L+++LP G ++ G LD R L++ K + + + E T I +LKI Sbjct: 404 LENNLNEELPVNLAKGNVIKSGVSDELDRLRGLQNSGKEYLDEMCQREIERTGIASLKIN 463 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 NN GY+IEV ++ KD + + +I +QT+ N R+ T EL + E++I A Sbjct: 464 FNNVFGYYIEVRNTH-----KD-KVPEEWIRKQTLVNAERYITTELKEYEDQILGAEERI 517 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 ++E E + + ++ + + +Q+IA +D+++ L+ L+ E+ Y +P++++ + + Sbjct: 518 AILEQEIYRKVCQEVLVYIDQIQENAQLIAQLDVAVGLSELSVEKGYTKPVLNDGFSIEL 577 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 K+ RHPI+E L + +I ND L D+ ++ ++TGPNM GKS LRQ A+I Sbjct: 578 KEARHPIIENALP--LGEKYIPNDLFL----DREEQQIIMVTGPNMAGKSAILRQTAVIC 631 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++AQ+GS+VPA YA IGI+DK+F+RVG+ DNL++G STFMVEM E A+ILN +++S ++ Sbjct: 632 LLAQIGSFVPAKYASIGILDKIFTRVGATDNLSAGESTFMVEMNEAANILNNISDRSLIL 691 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHE-TNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 LDEIGRGT+T DG+SIAWA EYLH+ + + L ATH+HEL +++ + +R N + + Sbjct: 692 LDEIGRGTSTYDGVSIAWAIAEYLHQHPTKPKTLFATHYHELNEMTNNFERIKNFHISIK 751 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 + IIFL K++ G ++HS+GI V KLAG+P TV++RA +ILKT E + +Q D + Sbjct: 752 EHKGNIIFLRKLVSGGSEHSFGIHVAKLAGMPATVVNRANEILKTLEN--NRSQNDTKES 809 Query: 854 YPEIQTKESKNNLSKNDKLFVEKIK----CLNLDEMSPLTALKTLYAVK 898 + + + + + D +E I+ ++++ ++P+ A+ L A+K Sbjct: 810 IKRVTEENLQLSFFQLDDPVLENIREELTKIDINTLTPIEAMMKLNAIK 858 >gi|315612291|ref|ZP_07887205.1| DNA mismatch repair protein MutS [Streptococcus sanguinis ATCC 49296] gi|315315684|gb|EFU63722.1| DNA mismatch repair protein MutS [Streptococcus sanguinis ATCC 49296] Length = 844 Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust. Identities = 293/883 (33%), Positives = 478/883 (54%), Gaps = 58/883 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYVDIKKQYPDAFLLFRMGDFYELFYEDAINAAQILEISLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI+ G+++AI EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPYHSAQQYIDVLIEQGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSSK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEKEL 204 + +N+L+A+ R ++ +A++D+ TG F ++ L+ +I + RE++ +L Sbjct: 121 PDSQNNFLVALDRDGNQFGLAYMDLVTGDFYVTGLLDFTLVCGEIRNLKAREVVLG-YDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E + L + + + F D + + R+A VE+ AA+ + Sbjct: 180 SEEEEQILSRQMNLLLSYEKEGFEDIHLLDPRLA---------------AVEQAAASKLL 224 Query: 265 SYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 Y+ +TQM KP I Y +I+ L +D A +++L+++ SG ++ SL +D Sbjct: 225 QYVHRTQMRELNHLKPVIRY----EIKDFLQMDYATKASLDLVENARSGKKQGSLFWLLD 280 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL I PL D +I R + + F+ + + + LK D+ R S Sbjct: 281 ETKTAMGMRLLRSWIHRPLIDKERIIQRQEVVQVFLDHFFERSDLTDSLKGVYDIERLAS 340 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G+ PKD+ + + S I + + P L +++L +P+ LE +S+ + Sbjct: 341 RVSFGKTNPKDLLQLATTLSSVPRIRAILEGMEQPA-LAYLIKQLDAIPE-LESLISAAI 398 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + + P +GG +R G D +LD+ R + + IA ++ K E + I LKI +N Sbjct: 399 APEAPHVITEGGIIRTGFDETLDKYRRVLREGTSWIAEIEAKERENSGISTLKIDYNKKD 458 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+ VT+S + F + T+ N RF T EL +E + A + +E Sbjct: 459 GYYFHVTNSQLGNVPA------HFFRKATLKNSERFGTEELARIEGDMLEAREKSANLEY 512 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F + + + + L +Q IA +D+ +LA++A+ Q+ RP + + ++ GRH Sbjct: 513 EIFMRIREEVSKYIQRLQALAQGIATVDVLQSLAVVAETQHLIRPEFGDDSQIDIQKGRH 572 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 +VEK + Q+ +I N ++ + L+TGPNM GKST++RQ A+ +MAQ+ Sbjct: 573 AVVEKVMGAQT---YIPNSIQMA-----EDTSIQLITGPNMSGKSTYMRQLAMTAVMAQL 624 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPA AH+ I D +F+R+G+AD+L SG+STFMVEM+E + ++ AT S ++ DE+G Sbjct: 625 GSYVPAESAHLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANNAISHATKDSLILFDELG 684 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A + IEY+HE + L ATH+HELT L SL+ N + + N + Sbjct: 685 RGTATYDGMALAQSIIEYIHEHIGAKTLFATHYHELTSLESSLEHLVNVHVATLEQNGQV 744 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 FLHK+ PG AD SYGI V K+AGLP +++RA IL E + MR QT Sbjct: 745 TFLHKIEPGPADKSYGIHVAKIAGLPEELLARADKILTQLENQGTESPAPMR------QT 798 Query: 860 KESKNNLSKND----KLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +S D + ++ L++ M+P+ A+ L +K Sbjct: 799 SAVTEQMSLFDAPAEHPILAELAKLDVYNMTPMQAMNVLVELK 841 >gi|254522797|ref|ZP_05134852.1| DNA mismatch repair protein MutS [Stenotrophomonas sp. SKA14] gi|219720388|gb|EED38913.1| DNA mismatch repair protein MutS [Stenotrophomonas sp. SKA14] Length = 851 Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust. Identities = 295/881 (33%), Positives = 467/881 (53%), Gaps = 42/881 (4%) Query: 29 MRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPV 88 M+Q+ KS PD L+F+RMGDFYELF+DDA A+R L ITLT+RG G IPM GVPV Sbjct: 1 MKQFFAAKSDYPDLLLFFRMGDFYELFYDDARKAARLLDITLTQRGSSGGAPIPMAGVPV 60 Query: 89 HTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPT 148 H Y+ +L+ +G +AICEQI P AK LV R VVR+VTPGT+T++ LL Sbjct: 61 HAYEGYLARLVALGESVAICEQIGDPALAK-----GLVERKVVRIVTPGTVTDEALLDER 115 Query: 149 DSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKELSHA 207 LMA++R + + +AW D++ G F ++ D L +++ R++P E++ ++E Sbjct: 116 RDTLLMALSRTKQGYGLAWADLAGGRFLVNEVETDDALEAELARLEPAELLVPDEE---- 171 Query: 208 EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAIS-Y 266 + V P FD ++ ++ + + FG + TAAA A+ Y Sbjct: 172 NWPEFLRQRTGVRRRAP-WLFDADSGRRQLLAFFKLHDLSGFGIDDKPRATAAAGALLGY 230 Query: 267 IKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAG 326 +++TQ P + E + +++A R +LE+ + G +LL +D ++T G Sbjct: 231 VEETQKQRLPHLTSIAMETAGEAIAMNAATRRHLELDTRVDGDTRNTLLGVLDSTVTPMG 290 Query: 327 GRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRG 386 GRL + PL + R ++ I + I++ + D+ R L+R+ + Sbjct: 291 GRLLRRWLHRPLRLREVLVQRHHAVETLIDRGSDAD-IREQFRRLGDLERILTRVALRSA 349 Query: 387 EPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKTLSSMLSDDLP 444 P+D + +RDG+ + + D P + L A+ + + Q L ++ M P Sbjct: 350 RPRDFSTLRDGLGLLPAVREVLAPLDSPRLQALHAALGEHDECAQLLASAIAEM-----P 404 Query: 445 TFK-RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 K DGG L DG D LDE R L + + + L+ + E + I LK+ +N GY+I Sbjct: 405 PLKLSDGGVLADGFDEELDELRRLSTHADQFLVDLEQRERESSGIATLKVGYNRVHGYYI 464 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 E++ + + + RQT++N R+ T EL E+++ +A + +L E +E Sbjct: 465 EISKGQSE------RAPVHYTRRQTLTNAERYITEELKAFEDKVLSARDRSLSREKYLYE 518 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L + + Q E L + ++ +D+ A A A+ ++ RP + ++ GRHP+VE Sbjct: 519 QLLDTLGGQLEPLKQCAAALSELDVLAAFAERAQALDWARPELQAEPCLKIERGRHPVVE 578 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 +Q PF ND DL P+ + + ++TGPNMGGKST++RQNALIV++A +GS+V Sbjct: 579 AVREQ----PFEPNDLDLH-PDRR----MLVITGPNMGGKSTYMRQNALIVLLAHIGSFV 629 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PAS A IG +D++ +R+G+ D+LA G+STFMVEM ET+ IL+ AT S V++DEIGRGT+ Sbjct: 630 PASRALIGPIDRILTRIGAGDDLARGQSTFMVEMAETSYILHHATAHSLVLMDEIGRGTS 689 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR-----FHNATLQVSDSNEG 798 T DGL++A A +L NRC L ATH+ ELT L+ N L + E Sbjct: 690 TYDGLALADAVARHLAYQNRCYTLFATHYFELTALADEQHEGGRSGIANVHLDAVEHGEA 749 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 ++F+H V G A+ S+G+QV LAGLP +++A L E+ + L + Sbjct: 750 LVFMHAVKDGPANRSFGLQVAALAGLPRATVAQARRRLAELEQRGGESHA-AELAPHALD 808 Query: 859 TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + + E + ++ DE++P AL+ LY +KA Sbjct: 809 APQQFGLFAAPSSKAQEALAAIDPDELTPKQALEALYRLKA 849 >gi|148984373|ref|ZP_01817661.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae SP3-BS71] gi|147923150|gb|EDK74264.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae SP3-BS71] gi|301800826|emb|CBW33481.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae OXC141] Length = 844 Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust. Identities = 293/883 (33%), Positives = 477/883 (54%), Gaps = 58/883 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEISLTSRNKNADNPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI+ G+++AI EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPYHSAQQYIDVLIEQGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSSK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEKEL 204 + +N+L+A+ R ++ +A++D+ TG F ++ L+ +I + RE++ +L Sbjct: 121 PDSQNNFLVAIDREGNQFGLAYMDLVTGDFYVTGLLDFTLVCGEIRNLKAREVVLG-YDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E + L + V + F D + + R+A VE+TA++ + Sbjct: 180 SEEEEQILSRQMNLVLSYEKESFEDLHLLDLRLA---------------TVEQTASSKLL 224 Query: 265 SYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 Y+ +TQM KP I Y +I+ L +D A +++L+++ SG ++ SL +D Sbjct: 225 QYVHRTQMRELNHLKPVIRY----EIKDFLQMDYATKASLDLVENARSGKKQGSLFWLLD 280 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL I PL D +I R + + F+ + + + LK D+ R S Sbjct: 281 ETKTAMGMRLLRSWIHRPLIDKERIVQRQEVVQVFLDHFFERSDLTDSLKGVYDIERLAS 340 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G+ PKD+ + + S I + + P L + +L +P+ LE +S+ + Sbjct: 341 RVSFGKTNPKDLLQLATTLSSVPRIRAILEGMEQPA-LAYLIAQLDAIPE-LESLISAAI 398 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + + P DGG +R G D +LD+ R + + IA ++ K E + I LKI +N Sbjct: 399 APEAPHVITDGGIIRTGFDETLDKYRCVLREGTSWIAEIEAKERENSGISTLKIDYNKKD 458 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+ VT+S + F + T+ N RF T EL +E + A + +E Sbjct: 459 GYYFHVTNSQLGNVPA------HFFRKATLKNSERFGTEELARIEGDMLEAREESANLEY 512 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F + + + + L +Q IA +D+ +LA++A+ Q RP + + ++ GRH Sbjct: 513 EIFMRIREEVGKYIQRLQALAQGIATVDVLQSLAVVAETQYLIRPEFGDDSQIDIRKGRH 572 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 +VEK + Q+ +I N ++ + L+TGPNM GKST++RQ A+ +MAQ+ Sbjct: 573 AVVEKVMGAQT---YIPNTIQMA-----EDTSIQLITGPNMSGKSTYMRQLAMTAVMAQL 624 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPA AH+ I D +F+R+G+AD+L SG+STFMVEM+E + ++ AT S ++ DE+G Sbjct: 625 GSYVPAESAHLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELG 684 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A + IEY+HE + L ATH+HELT L SL+ N + + + + Sbjct: 685 RGTATYDGMALAQSIIEYIHEHIGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQV 744 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 FLHK+ PG AD SYGI V K+AGLP +++RA IL E + MR QT Sbjct: 745 TFLHKIEPGPADKSYGIHVAKIAGLPADLLARADKILTQLENQGTESPPPMR------QT 798 Query: 860 KESKNNLSKNDKL----FVEKIKCLNLDEMSPLTALKTLYAVK 898 +S D+ + ++ L++ M+P+ + L +K Sbjct: 799 SAVTEQISLFDRAEEHPILAELAKLDVYNMTPMQVMNVLVELK 841 >gi|116629083|ref|YP_814255.1| DNA mismatch repair protein [Lactobacillus gasseri ATCC 33323] gi|238853826|ref|ZP_04644191.1| DNA mismatch repair protein MutS [Lactobacillus gasseri 202-4] gi|282852792|ref|ZP_06262134.1| DNA mismatch repair protein MutS [Lactobacillus gasseri 224-1] gi|122273919|sp|Q045Q5|MUTS_LACGA RecName: Full=DNA mismatch repair protein mutS gi|116094665|gb|ABJ59817.1| DNA mismatch repair protein MutS [Lactobacillus gasseri ATCC 33323] gi|238833521|gb|EEQ25793.1| DNA mismatch repair protein MutS [Lactobacillus gasseri 202-4] gi|282556534|gb|EFB62154.1| DNA mismatch repair protein MutS [Lactobacillus gasseri 224-1] Length = 857 Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust. Identities = 276/824 (33%), Positives = 457/824 (55%), Gaps = 40/824 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K +TPMM+QY EIK PD+ +FYR+GDFYELF DDA+ ++ L +TLT R IP Sbjct: 4 KDTTPMMKQYYEIKEQYPDAFLFYRVGDFYELFEDDAVKGAQILELTLTHRSNKTKNPIP 63 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP + Y+ L++ G+++A+CEQ+E P +AK +V+R +++L+TPGT+ + Sbjct: 64 MAGVPHLAVDTYVNTLVEKGYKVALCEQLEDPKKAK-----GMVKRGIIQLITPGTMMHE 118 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSE 201 + DSNYL +V + + +A+ D+STG F ++ + + ++++ + RE++++ Sbjct: 119 RPDQAKDSNYLTSVISTNSGFGLAYSDLSTGETFSTHLTDFEGVANELLSLQTREVVYN- 177 Query: 202 KELSH-AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 H E F N+ V++P S + N+T E A Sbjct: 178 ---GHLTEANKDFLKKANITVSEPVKVEGEHAEISYVTQ--NLT--------DDAEIKAT 224 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTID 319 ++Y+ TQ + + + + L + ++NLE++++ S++ SL +D Sbjct: 225 KQLVAYLLSTQKRSLAHLQVAQSYEPTQYLQMSHTVQTNLELIKSAKTSKKMGSLFWLLD 284 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T GGRL I PL T+I R + + + + + LK D+ R Sbjct: 285 KTSTAMGGRLLKSWIERPLLSVTEITRRQEMVQALLDDYFTREKVIDSLKGVYDLERLTG 344 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G +++ + + + +ILN L+ + P L+ +++ L + + + + + Sbjct: 345 RIAFGSVNAREMLQLAHSLGAIPDILNSLLETNNPH-LQNFAKQIDPL-KGIHDLIVNTI 402 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 D+ P +GG +R+G LD R + K+ ++ ++ E T I NLK+ +N Sbjct: 403 VDNPPLLTTEGGLIREGVSDQLDRYRDAMNNGKKWLSEMESHEREVTGINNLKVGYNKVF 462 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IEVT+S+ KD DR+ +QT++N R+ T +L + E+ I A + +E Sbjct: 463 GYYIEVTNSN-----KDKVPTDRYTRKQTLTNAERYITPDLKEHESLILEAEAKSTGLEY 517 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP--IIDNSTNFIVKDG 617 + F L + + +L ++ +A +D+ A ++++ NY RP +D +V +G Sbjct: 518 DLFVKLRENVKKYIPALQKLAKQVASLDVLTNFATVSEQNNYVRPDFTVDKQEINVV-NG 576 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ + ++ +I ND + D ++L+TGPNM GKST++RQ ALI IMA Sbjct: 577 RHPVVEQVM---TAGSYIPNDVKMDQDTD-----IFLITGPNMSGKSTYMRQMALIAIMA 628 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+G +VPA A + I D++F+R+G+AD+L SG+STFMVEM E L AT +S V+ DE Sbjct: 629 QIGCFVPADSATLPIFDQIFTRIGAADDLISGQSTFMVEMSEANDALQHATKRSLVLFDE 688 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGTAT DG+++A A ++YLH+ + L ATH+HELTDL ++LK N + ++ N Sbjct: 689 IGRGTATYDGMALAGAIVKYLHDKVGAKTLFATHYHELTDLDQTLKHLKNIHVGATEENG 748 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 +IFLHK++PG AD SYGI V +LAGLP+ V+ A +LK EK Sbjct: 749 KLIFLHKILPGPADQSYGIHVAQLAGLPHKVLREATTMLKRLEK 792 >gi|168491603|ref|ZP_02715746.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae CDC0288-04] gi|307128338|ref|YP_003880369.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 670-6B] gi|183574029|gb|EDT94557.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae CDC0288-04] gi|251766525|gb|ACC61791.1| DNA mismatch repair protein [Streptococcus pneumoniae] gi|306485400|gb|ADM92269.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 670-6B] Length = 844 Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust. Identities = 292/883 (33%), Positives = 478/883 (54%), Gaps = 58/883 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEISLTSRNKNADNPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI+ G+++AI EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPYHSAQQYIDVLIEQGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSSK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEKEL 204 + +N+L+++ R ++ +A++D+ TG F ++ L+ +I + RE++ +L Sbjct: 121 PDSQNNFLVSIDREGNQFGLAYMDLVTGDFYVTGLLDFTLVCGEIRNLKAREVVLG-YDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E + L + V + F D + + R+A VE+TA++ + Sbjct: 180 SEEEEQILSRQMNLVLSYEKESFEDLHLLDLRLA---------------TVEQTASSKLL 224 Query: 265 SYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 Y+ +TQM KP I Y +I+ L +D A +++L+++ SG ++ SL +D Sbjct: 225 QYVHRTQMRELNHLKPVIRY----EIKDFLQMDYATKASLDLVENARSGKKQGSLFWLLD 280 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL I PL D +I R + + F+ + + + LK D+ R S Sbjct: 281 ETKTAMGMRLLRSWIHRPLIDKERIVQRQEVVQVFLDHFFERSDLTDSLKGVYDIERLAS 340 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G+ PKD+ + + S I + + P L + +L +P+ LE +S+ + Sbjct: 341 RVSFGKTNPKDLLQLATTLSSVPRIRAILEGMEQPT-LAYLIAQLDAIPE-LESLISAAI 398 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + + P DGG +R G D +LD+ R + + IA ++ K E + I LKI +N Sbjct: 399 APEAPHVITDGGIIRTGFDETLDKYRCVLREGTSWIAEIEAKERENSGISTLKIDYNKKD 458 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+ VT+S + F + T+ N RF T EL +E + A + +E Sbjct: 459 GYYFHVTNSQLGNVPA------HFFRKATLKNSERFGTEELARIEGDMLEAREKSANLEY 512 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F + + + + L +Q IA +D+ +LA++A+ Q+ RP + + ++ GRH Sbjct: 513 EIFMRIREEVGKYIQRLQTLAQGIATVDVLQSLAVVAETQHLIRPEFGDDSQIDIRKGRH 572 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 +VEK + Q+ +I N ++ + L+TGPNM GKST++RQ A+ +MAQ+ Sbjct: 573 AVVEKVMGAQT---YIPNTIQMA-----EDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQL 624 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPA AH+ I D +F+R+G+AD+L SG+STFMVEM+E + ++ AT S ++ DE+G Sbjct: 625 GSYVPAESAHLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELG 684 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A + IEY+HE + L ATH+HELT L SL+ N + + + + Sbjct: 685 RGTATYDGMALAQSIIEYIHEHIGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQV 744 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 FLHK+ PG AD SYGI V K+AGLP +++RA IL E + MR QT Sbjct: 745 TFLHKIEPGPADKSYGIHVAKIAGLPADLLARADKILTQLENQGTESPPPMR------QT 798 Query: 860 KESKNNLSKNDKL----FVEKIKCLNLDEMSPLTALKTLYAVK 898 +S D+ + ++ L++ M+P+ + L +K Sbjct: 799 SAVTEQISLFDRAEEHPILAELAKLDVYNMTPMQVMNVLVELK 841 >gi|225861895|ref|YP_002743404.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae Taiwan19F-14] gi|298230664|ref|ZP_06964345.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254472|ref|ZP_06978058.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501576|ref|YP_003723516.1| DNA mismatch repair protein [Streptococcus pneumoniae TCH8431/19A] gi|254766644|sp|C1CTY2|MUTS_STRZT RecName: Full=DNA mismatch repair protein mutS gi|225727079|gb|ACO22930.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae Taiwan19F-14] gi|251766523|gb|ACT16085.1| DNA mismatch repair protein [Streptococcus pneumoniae] gi|298237171|gb|ADI68302.1| DNA mismatch repair protein [Streptococcus pneumoniae TCH8431/19A] gi|327388813|gb|EGE87161.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA04375] Length = 844 Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust. Identities = 292/883 (33%), Positives = 479/883 (54%), Gaps = 58/883 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEISLTSRNKNADNPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI+ G+++AI EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPYHSAQQYIDVLIEQGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSSK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEKEL 204 + +N+L+++ R ++ +A++D+ TG F ++ L+ +I + RE++ +L Sbjct: 121 PDSQNNFLVSIDREGNQFGLAYMDLVTGDFYVTGLLDFTLVCGEIRNLKAREVVLG-YDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E + L + V + F D + + R+A VE+TA++ + Sbjct: 180 SEEEEQILSRQMNLVLSYEKESFEDLHLLDLRLA---------------TVEQTASSKLL 224 Query: 265 SYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 Y+ +TQM KP I Y +I+ L +D A +++L+++ SG ++ SL +D Sbjct: 225 QYVHRTQMRELNHLKPVIRY----EIKDFLQMDYATKASLDLVENARSGKKQGSLFWLLD 280 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL I PL D +I R + + F+ + + + LK D+ R S Sbjct: 281 ETKTAMGMRLLRSWIHRPLIDKERIVQRQEVVQVFLDHFFERSDLTDSLKGVYDIERLAS 340 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G+ PKD+ + + S I + + P L + +L +P+ LE +S+ + Sbjct: 341 RVSFGKTNPKDLLQLATTLSSVPRIRAILEGMEQPT-LAYLIAQLDAIPE-LESLISAAI 398 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + + P DGG +R G D +LD+ R + + IA ++ K E + I LKI +N Sbjct: 399 APEAPHVITDGGIIRTGFDETLDKYRCVLREGTSWIAEIEAKERENSGISTLKIDYNKKD 458 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+ VT+S + F + T+ N RF T EL +E + A + +E Sbjct: 459 GYYFHVTNSQLGNVPA------HFFRKATLKNSERFGTEELARIEGDMLEAREKSANLEY 512 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F + + + + L +Q IA +D+ +LA++A+ Q+ RP + + ++ GRH Sbjct: 513 EIFMRIREEVGKYIQRLQALAQGIATVDVLQSLAVVAETQHLIRPEFGDDSQIDIRKGRH 572 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 +VEK + Q+ +I N ++ + L+TGPNM GKST++RQ A+ +MAQ+ Sbjct: 573 AVVEKVMGAQT---YIPNTIQMA-----EDTSIQLITGPNMSGKSTYMRQLAMTAVMAQL 624 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPA AH+ I D +F+R+G+AD+L SG+STFMVEM+E + ++ AT S ++ DE+G Sbjct: 625 GSYVPAESAHLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELG 684 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A + IEY+HE + L ATH+HELT L SL+ N + + + + Sbjct: 685 RGTATYDGMALAQSIIEYIHEHIGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQV 744 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 FLHK+ PG AD SYGI V K+AGLP +++RA IL E + MR QT Sbjct: 745 TFLHKIEPGPADKSYGIHVAKIAGLPADLLARADKILTQLENQGTESPPPMR------QT 798 Query: 860 KESKNNLSKNDKL----FVEKIKCLNLDEMSPLTALKTLYAVK 898 ++S D+ + ++ L++ M+P+ + L +K Sbjct: 799 SAVTEHISLFDRAEEHPILAELAKLDVYNMTPMQVMNVLVELK 841 >gi|326800459|ref|YP_004318278.1| DNA mismatch repair protein mutS [Sphingobacterium sp. 21] gi|326551223|gb|ADZ79608.1| DNA mismatch repair protein mutS [Sphingobacterium sp. 21] Length = 871 Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust. Identities = 277/839 (33%), Positives = 464/839 (55%), Gaps = 50/839 (5%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 L + K TP+M+QY IK+ P +L+ +R+GDFYE F DA+ A+ LGI LTKRG Sbjct: 3 LAKTAKKETPLMQQYNSIKAKYPGALLLFRVGDFYETFGSDAVKAAEILGIVLTKRGNGS 62 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 + + G P H+ Y+ KL++ G R+AIC+Q+E P + K++V+R V LVTPG Sbjct: 63 ASETELAGFPHHSLETYLPKLVRAGQRVAICDQLEDP-----KSVKTIVKRGVTELVTPG 117 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREI 197 D ++ +NYL ++ + ++++DISTG F ++ + D + + P EI Sbjct: 118 VSYNDNIIQQKANNYLASLYLDKNAIGVSFLDISTGEFLVAQGSGDYIDKLLQGFKPSEI 177 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISE---------SRIADYYNITTVDT 248 I ++ S++++ F + F+ +++ E + ++ + ++ Sbjct: 178 ILPKR--SYSDFVDQFS----------DRFYTYTLDEWPYSGDYAKETLLKHFEVNSLKG 225 Query: 249 FG-SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS 307 FG + AA A+ Y+ + + N I R + +++D NLE++ + + Sbjct: 226 FGIDRMHLAIVAAGVALHYLNEAEHRNLQHISNIARIEEDRYMWLDRFTVRNLELIGS-A 284 Query: 308 GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI 367 +L +D + + G RL + PL D I RL+ + + ++ L + + Sbjct: 285 NENAITLADVLDSTSSPMGARLLKRWMVMPLKDKRPITERLEVVEYLLKRADLREQLTQE 344 Query: 368 LKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKL--- 424 +K D+ R +S++ + + P+++ ++ +++ + L D + L E+L Sbjct: 345 IKQIGDLERLISKIGLQKANPRELVQLKRALQAIGRLKELTATAD-AQALNVIAEQLNPC 403 Query: 425 KKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAE 484 K + +EK L S + P G + DG DA LD R + K + +Q + +E Sbjct: 404 KIICDRIEKELKS----EPPVLLIKGNVIADGVDAELDRLRKVAFGGKDYLLEIQKRESE 459 Query: 485 ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLE 544 T I +LKI NN GY++EVT++ + D ++ +QT+ N R+ T EL + E Sbjct: 460 ITGIPSLKISFNNVFGYYLEVTNAHKDKVPAD------WVRKQTLVNAERYITNELKEYE 513 Query: 545 NRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP 604 +I A + +IE + L ++++ + + + +I+ +D+ + A +A + +Y +P Sbjct: 514 EQILGAEDKIQVIENRLYNELLASLLDYIKPVQLNANLISQLDVLLNFATIAHKNHYVKP 573 Query: 605 IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 II++ +K GRHP++EK L + +I ND L D +S ++ ++TGPNM GKS Sbjct: 574 IINDGKLIDIKGGRHPVIEKNLP--IGEEYITNDVFL----DSDSQQIIIITGPNMAGKS 627 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 LRQ LIV+MAQMG +VPA +A IG+VDK+F+RVG++DNL+SG STFMVEM ETASIL Sbjct: 628 ALLRQTGLIVLMAQMGCFVPAKHAEIGLVDKIFTRVGASDNLSSGESTFMVEMNETASIL 687 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSL 782 N +++S ++LDEIGRGT+T DG+SIAWA EYLH + + + L ATH+HEL +L+ + Sbjct: 688 NNLSDRSLILLDEIGRGTSTYDGISIAWAIAEYLHNHPSAKAKTLFATHYHELNELTNTF 747 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 R N + V + N IIFL K++PG ++HS+GI V K+AG+P ++ RA +ILK E+ Sbjct: 748 NRIKNFNVSVKEVNNKIIFLRKLVPGGSEHSFGIHVAKMAGMPAKLVVRANEILKRLEQ 806 >gi|111657151|ref|ZP_01407932.1| hypothetical protein SpneT_02001631 [Streptococcus pneumoniae TIGR4] gi|116515831|ref|YP_817292.1| DNA mismatch repair protein [Streptococcus pneumoniae D39] gi|148989894|ref|ZP_01821177.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae SP6-BS73] gi|148998130|ref|ZP_01825643.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae SP11-BS70] gi|149002904|ref|ZP_01827815.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae SP14-BS69] gi|149006958|ref|ZP_01830639.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae SP18-BS74] gi|149011933|ref|ZP_01833081.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae SP19-BS75] gi|168484415|ref|ZP_02709367.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae CDC1873-00] gi|168494170|ref|ZP_02718313.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae CDC3059-06] gi|168577109|ref|ZP_02722929.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae MLV-016] gi|221232788|ref|YP_002511942.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae ATCC 700669] gi|225855565|ref|YP_002737077.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae JJA] gi|225857650|ref|YP_002739161.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae P1031] gi|225859833|ref|YP_002741343.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 70585] gi|237650273|ref|ZP_04524525.1| DNA mismatch repair protein [Streptococcus pneumoniae CCRI 1974] gi|237822221|ref|ZP_04598066.1| DNA mismatch repair protein [Streptococcus pneumoniae CCRI 1974M2] gi|303259578|ref|ZP_07345554.1| DNA mismatch repair protein HexA [Streptococcus pneumoniae SP-BS293] gi|303262023|ref|ZP_07347968.1| DNA mismatch repair protein HexA [Streptococcus pneumoniae SP14-BS292] gi|303264479|ref|ZP_07350398.1| DNA mismatch repair protein HexA [Streptococcus pneumoniae BS397] gi|303267398|ref|ZP_07353254.1| DNA mismatch repair protein HexA [Streptococcus pneumoniae BS457] gi|303269757|ref|ZP_07355508.1| DNA mismatch repair protein HexA [Streptococcus pneumoniae BS458] gi|307068689|ref|YP_003877655.1| mismatch repair ATPase [Streptococcus pneumoniae AP200] gi|61225741|sp|P0A3R3|HEXA_STRPN RecName: Full=DNA mismatch repair protein hexA gi|61225742|sp|P0A3R4|HEXA_STRR6 RecName: Full=DNA mismatch repair protein hexA gi|122277862|sp|Q04I96|MUTS_STRP2 RecName: Full=DNA mismatch repair protein mutS gi|254766639|sp|C1CAQ5|MUTS_STRP7 RecName: Full=DNA mismatch repair protein mutS gi|254766640|sp|B8ZPK0|MUTS_STRPJ RecName: Full=DNA mismatch repair protein mutS gi|254766642|sp|C1CH06|MUTS_STRZJ RecName: Full=DNA mismatch repair protein mutS gi|254766643|sp|C1CN23|MUTS_STRZP RecName: Full=DNA mismatch repair protein mutS gi|153655|gb|AAA88597.1| mismatch repair protein [Streptococcus pneumoniae] gi|116076407|gb|ABJ54127.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae D39] gi|133950199|gb|ABO44015.1| MutS [Streptococcus pneumoniae] gi|147756140|gb|EDK63183.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae SP11-BS70] gi|147758907|gb|EDK65902.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae SP14-BS69] gi|147761559|gb|EDK68524.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae SP18-BS74] gi|147763888|gb|EDK70821.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae SP19-BS75] gi|147924679|gb|EDK75764.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae SP6-BS73] gi|172042346|gb|EDT50392.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae CDC1873-00] gi|183575846|gb|EDT96374.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae CDC3059-06] gi|183577255|gb|EDT97783.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae MLV-016] gi|220675250|emb|CAR69841.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae ATCC 700669] gi|225720589|gb|ACO16443.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae 70585] gi|225722884|gb|ACO18737.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae JJA] gi|225724726|gb|ACO20578.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae P1031] gi|251766517|gb|ACC61788.1| DNA mismatch repair protein [Streptococcus pneumoniae] gi|301802750|emb|CBW35522.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae INV200] gi|302636663|gb|EFL67153.1| DNA mismatch repair protein HexA [Streptococcus pneumoniae SP14-BS292] gi|302639130|gb|EFL69589.1| DNA mismatch repair protein HexA [Streptococcus pneumoniae SP-BS293] gi|302640704|gb|EFL71100.1| DNA mismatch repair protein HexA [Streptococcus pneumoniae BS458] gi|302643063|gb|EFL73354.1| DNA mismatch repair protein HexA [Streptococcus pneumoniae BS457] gi|302645849|gb|EFL76077.1| DNA mismatch repair protein HexA [Streptococcus pneumoniae BS397] gi|306410226|gb|ADM85653.1| Mismatch repair ATPase (MutS family) [Streptococcus pneumoniae AP200] gi|332071146|gb|EGI81641.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA17545] gi|332198497|gb|EGJ12580.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA41317] gi|332198681|gb|EGJ12763.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA47368] Length = 844 Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust. Identities = 292/883 (33%), Positives = 478/883 (54%), Gaps = 58/883 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEISLTSRNKNADNPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI+ G+++AI EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPYHSAQQYIDVLIEQGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSSK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEKEL 204 + +N+L+++ R ++ +A++D+ TG F ++ L+ +I + RE++ +L Sbjct: 121 PDSQNNFLVSIDREGNQFGLAYMDLVTGDFYVTGLLDFTLVCGEIRNLKAREVVLG-YDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E + L + V + F D + + R+A VE+TA++ + Sbjct: 180 SEEEEQILSRQMNLVLSYEKESFEDLHLLDLRLA---------------TVEQTASSKLL 224 Query: 265 SYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 Y+ +TQM KP I Y +I+ L +D A +++L+++ SG ++ SL +D Sbjct: 225 QYVHRTQMRELNHLKPVIRY----EIKDFLQMDYATKASLDLVENARSGKKQGSLFWLLD 280 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL I PL D +I R + + F+ + + + LK D+ R S Sbjct: 281 ETKTAMGMRLLRSWIHRPLIDKERIVQRQEVVQVFLDHFFERSDLTDSLKGVYDIERLAS 340 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G+ PKD+ + + S I + + P L + +L +P+ LE +S+ + Sbjct: 341 RVSFGKTNPKDLLQLATTLSSVPRIRAILEGMEQPT-LAYLIAQLDAIPE-LESLISAAI 398 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + + P DGG +R G D +LD+ R + + IA ++ K E + I LKI +N Sbjct: 399 APEAPHVITDGGIIRTGFDETLDKYRCVLREGTSWIAEIEAKERENSGISTLKIDYNKKD 458 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+ VT+S + F + T+ N RF T EL +E + A + +E Sbjct: 459 GYYFHVTNSQLGNVPA------HFFRKATLKNSERFGTEELARIEGDMLEAREKSANLEY 512 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F + + + + L +Q IA +D+ +LA++A+ Q+ RP + + ++ GRH Sbjct: 513 EIFMRIREEVGKYIQRLQALAQGIATVDVLQSLAVVAETQHLIRPEFGDDSQIDIRKGRH 572 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 +VEK + Q+ +I N ++ + L+TGPNM GKST++RQ A+ +MAQ+ Sbjct: 573 AVVEKVMGAQT---YIPNTIQMA-----EDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQL 624 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPA AH+ I D +F+R+G+AD+L SG+STFMVEM+E + ++ AT S ++ DE+G Sbjct: 625 GSYVPAESAHLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELG 684 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A + IEY+HE + L ATH+HELT L SL+ N + + + + Sbjct: 685 RGTATYDGMALAQSIIEYIHEHIGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQV 744 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 FLHK+ PG AD SYGI V K+AGLP +++RA IL E + MR QT Sbjct: 745 TFLHKIEPGPADKSYGIHVAKIAGLPADLLARADKILTQLENQGTESPPPMR------QT 798 Query: 860 KESKNNLSKNDKL----FVEKIKCLNLDEMSPLTALKTLYAVK 898 +S D+ + ++ L++ M+P+ + L +K Sbjct: 799 SAVTEQISLFDRAEEHPILAELAKLDVYNMTPMQVMNVLVELK 841 >gi|149023772|ref|ZP_01836233.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae SP23-BS72] gi|147929568|gb|EDK80561.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae SP23-BS72] Length = 844 Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust. Identities = 292/883 (33%), Positives = 478/883 (54%), Gaps = 58/883 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEISLTSRNKNADNPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI+ G+++AI EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPYHSAQQYIDVLIEQGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSSK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEKEL 204 + +N+L+++ R ++ +A++D+ TG F ++ L+ +I + RE++ +L Sbjct: 121 PDSQNNFLVSIDREGNQFGLAYMDLVTGDFYVTGLLDFTLVCGEIRNLKAREVVLG-YDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E + L + V + F D + + R+A VE+TA++ + Sbjct: 180 SEEEEQILSRQMNLVLSYEKESFEDLHLLDLRLA---------------TVEQTASSKLL 224 Query: 265 SYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 Y+ +TQM KP I Y +I+ L +D A +++L+++ SG ++ SL +D Sbjct: 225 RYVHRTQMRELNHLKPVIRY----EIKDFLQMDYATKASLDLVENARSGKKQGSLFWLLD 280 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL I PL D +I R + + F+ + + + LK D+ R S Sbjct: 281 ETKTAMGMRLLRSWIHRPLIDKERIVQRQEVVQVFLDHFFERSDLTDSLKGVYDIERLAS 340 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G+ PKD+ + + S I + + P L + +L +P+ LE +S+ + Sbjct: 341 RVSFGKTNPKDLLQLATTLSSVPRIRAILEGMEQPA-LAYLIAQLDAIPE-LESLISAAI 398 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + + P DGG +R G D +LD+ R + + IA ++ K E + I LKI +N Sbjct: 399 APEAPHVITDGGIIRTGFDETLDKYRCVLREGTSWIAEIEAKERENSGISTLKIDYNKKD 458 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+ VT+S + F + T+ N RF T EL +E + A + +E Sbjct: 459 GYYFHVTNSQLGNVPA------HFFRKATLKNSERFGTEELARIEGDMLEAREKSANLEY 512 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F + + + + L +Q IA +D+ +LA++A+ Q+ RP + + ++ GRH Sbjct: 513 EIFMRIREEVGKYIQRLQALAQGIATVDVLQSLAVVAETQHLIRPEFGDDSQIDIRKGRH 572 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 +VEK + Q+ +I N ++ + L+TGPNM GKST++RQ A+ +MAQ+ Sbjct: 573 AVVEKVMGAQT---YIPNTIQMA-----EDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQL 624 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPA AH+ I D +F+R+G+AD+L SG+STFMVEM+E + ++ AT S ++ DE+G Sbjct: 625 GSYVPAESAHLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELG 684 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A + IEY+HE + L ATH+HELT L SL+ N + + + + Sbjct: 685 RGTATYDGMALAQSIIEYIHEHIGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQV 744 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 FLHK+ PG AD SYGI V K+AGLP +++RA IL E + MR QT Sbjct: 745 TFLHKIEPGPADKSYGIHVAKIAGLPADLLARADKILTQLENQGTESPPPMR------QT 798 Query: 860 KESKNNLSKNDKL----FVEKIKCLNLDEMSPLTALKTLYAVK 898 +S D+ + ++ L++ M+P+ + L +K Sbjct: 799 SAVTEQISLFDRAEEHPILAELAKLDVYNMTPMQVMNVLVELK 841 >gi|257066441|ref|YP_003152697.1| DNA mismatch repair protein MutS [Anaerococcus prevotii DSM 20548] gi|256798321|gb|ACV28976.1| DNA mismatch repair protein MutS [Anaerococcus prevotii DSM 20548] Length = 868 Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust. Identities = 299/898 (33%), Positives = 495/898 (55%), Gaps = 79/898 (8%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG--KDIPM 83 TPM++ Y+++K+ D+++ YR+GDFYE FFDDA++ S+ L +TLT GK G K PM Sbjct: 11 TPMLKHYVDVKNDFKDAILLYRVGDFYEAFFDDAIITSKALSLTLT--GKECGHEKKAPM 68 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVP H ++Y KL+K G+++A+C+Q+E P EAK LV+R + R++TPGT+T+ + Sbjct: 69 CGVPHHVIDNYAFKLVKQGYKVALCDQVEDPKEAK-----GLVKRAITRVITPGTITDME 123 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTG------IFKISTSNHDRLISDIMRIDPREI 197 L +NYL+++ + +I++ DISTG I +S+S + I I +I+P EI Sbjct: 124 SLDNRKNNYLLSIFQNDYGLSISYCDISTGKLVSFEIKGLSSSIGKKAIDQIEKINPSEI 183 Query: 198 I----FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRI---ADYYNITTV--DT 248 + F+++ L F D I + I DY N ++ D Sbjct: 184 LINSDFNDQNLRR-------------------YFLDEEIFVNYIQNPKDYMNRASLIRDH 224 Query: 249 FG--SFSQVEKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLE 301 G + ++E + A + YI K N I + +I + ++++ R NLE Sbjct: 225 LGDDNLKKIENMRLSILSLANLLDYIYKYHKDNLVHINNIDILEINDYMELEASTRKNLE 284 Query: 302 ILRTLSG-SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL 360 + + L+ ++E SLL ID + T G R+ +E + PL D KI RLD + + IL Sbjct: 285 LSKNLNNNTKENSLLSIIDKADTVMGSRMISEYLERPLIDKRKIERRLDIVEVLFNDRIL 344 Query: 361 INPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGA 420 + I +L D+ R ++++ R +D +++ I + I L L++ + Sbjct: 345 ASNISNLLSDVYDLERLIAKISYKRANGRDFISLKNSI-ANIPKLKDILRSYSDTNISNI 403 Query: 421 VEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 E + + + + + +D P +GG ++D + LD+ + ++ + + Sbjct: 404 GENIPDVSDIFD-LIDKAIVEDPPIAISEGGIIKDSYNDELDKLKESSSSAQSALIEYEN 462 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 K E+T IKN KI N N GY IE+T S+ + D ++ +QT+ N R+TT +L Sbjct: 463 KEREKTGIKNYKIVFNKNNGYSIEITKSNLD------KVPDSYVRKQTLKNQERYTTEKL 516 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 ++ + I + +E + F+ + +++ + L ++++A +D A ++ E + Sbjct: 517 EEISSLILGGKDRINDLEYKIFQEIREKVLKNTIKLQALAKILATVDTLNTFAKISLENS 576 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 Y RP+I +KDGRHP++E+ LK+ FI ND D+ N+ + ++TGPNM Sbjct: 577 YVRPVIREDNIIKIKDGRHPVIERKLKENE---FIPNDTDIGEENNL----IQIITGPNM 629 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GKST++RQ A+I+I+AQMG +VPAS A I I D++F+R+G++DN++ G STFM+EM E Sbjct: 630 AGKSTYMRQMAIIIILAQMGCFVPASLAEISICDQVFTRIGASDNISKGESTFMLEMNEV 689 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 +SIL +T SFVILDE+GRGT++ DGLSIA A +EYL + + + + ATHFHELT L K Sbjct: 690 SSILKNSTEHSFVILDEVGRGTSSDDGLSIAMAIVEYLSKRKKVKTVFATHFHELTILEK 749 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 L N +++ + N ++FL K+ G +D SYGI+V KL+GLPN +I A I+ + Sbjct: 750 ELDNVKNLKIEILEENNNLVFLRKISEGKSDRSYGIEVAKLSGLPNEIIDNAKIIM---D 806 Query: 841 KLYHHNQKDMRLYYPEIQTKESKNNLSK--NDKLFVEKIKCLNLD--EMSPLTALKTL 894 KL + +Y + KE +L + + KL KI+ N+D ++P+ A+ +L Sbjct: 807 KLSTDD------FYDLDKKKEISTSLEEISDQKLEEVKIEASNIDINNLTPMEAINSL 858 >gi|15903929|ref|NP_359479.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae R6] gi|182685013|ref|YP_001836760.1| DNA mismatch repair protein HexA [Streptococcus pneumoniae CGSP14] gi|15459581|gb|AAL00690.1| DNA mismatch repair protein HexA [Streptococcus pneumoniae R6] gi|182630347|gb|ACB91295.1| DNA mismatch repair protein HexA [Streptococcus pneumoniae CGSP14] Length = 857 Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust. Identities = 292/883 (33%), Positives = 478/883 (54%), Gaps = 58/883 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I+LT R K+ IPM G Sbjct: 20 SPGMQQYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEISLTSRNKNADNPIPMAG 79 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI+ G+++AI EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 80 VPYHSAQQYIDVLIEQGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSSK 133 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEKEL 204 + +N+L+++ R ++ +A++D+ TG F ++ L+ +I + RE++ +L Sbjct: 134 PDSQNNFLVSIDREGNQFGLAYMDLVTGDFYVTGLLDFTLVCGEIRNLKAREVVLG-YDL 192 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E + L + V + F D + + R+A VE+TA++ + Sbjct: 193 SEEEEQILSRQMNLVLSYEKESFEDLHLLDLRLA---------------TVEQTASSKLL 237 Query: 265 SYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 Y+ +TQM KP I Y +I+ L +D A +++L+++ SG ++ SL +D Sbjct: 238 QYVHRTQMRELNHLKPVIRY----EIKDFLQMDYATKASLDLVENARSGKKQGSLFWLLD 293 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL I PL D +I R + + F+ + + + LK D+ R S Sbjct: 294 ETKTAMGMRLLRSWIHRPLIDKERIVQRQEVVQVFLDHFFERSDLTDSLKGVYDIERLAS 353 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G+ PKD+ + + S I + + P L + +L +P+ LE +S+ + Sbjct: 354 RVSFGKTNPKDLLQLATTLSSVPRIRAILEGMEQPT-LAYLIAQLDAIPE-LESLISAAI 411 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + + P DGG +R G D +LD+ R + + IA ++ K E + I LKI +N Sbjct: 412 APEAPHVITDGGIIRTGFDETLDKYRCVLREGTSWIAEIEAKERENSGISTLKIDYNKKD 471 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+ VT+S + F + T+ N RF T EL +E + A + +E Sbjct: 472 GYYFHVTNSQLGNVPA------HFFRKATLKNSERFGTEELARIEGDMLEAREKSANLEY 525 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F + + + + L +Q IA +D+ +LA++A+ Q+ RP + + ++ GRH Sbjct: 526 EIFMRIREEVGKYIQRLQALAQGIATVDVLQSLAVVAETQHLIRPEFGDDSQIDIRKGRH 585 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 +VEK + Q+ +I N ++ + L+TGPNM GKST++RQ A+ +MAQ+ Sbjct: 586 AVVEKVMGAQT---YIPNTIQMA-----EDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQL 637 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPA AH+ I D +F+R+G+AD+L SG+STFMVEM+E + ++ AT S ++ DE+G Sbjct: 638 GSYVPAESAHLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELG 697 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A + IEY+HE + L ATH+HELT L SL+ N + + + + Sbjct: 698 RGTATYDGMALAQSIIEYIHEHIGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQV 757 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 FLHK+ PG AD SYGI V K+AGLP +++RA IL E + MR QT Sbjct: 758 TFLHKIEPGPADKSYGIHVAKIAGLPADLLARADKILTQLENQGTESPPPMR------QT 811 Query: 860 KESKNNLSKNDKL----FVEKIKCLNLDEMSPLTALKTLYAVK 898 +S D+ + ++ L++ M+P+ + L +K Sbjct: 812 SAVTEQISLFDRAEEHPILAELAKLDVYNMTPMQVMNVLVELK 854 >gi|325915949|ref|ZP_08178244.1| DNA mismatch repair protein MutS [Xanthomonas vesicatoria ATCC 35937] gi|325537836|gb|EGD09537.1| DNA mismatch repair protein MutS [Xanthomonas vesicatoria ATCC 35937] Length = 851 Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust. Identities = 291/879 (33%), Positives = 471/879 (53%), Gaps = 38/879 (4%) Query: 29 MRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPV 88 M+Q+ KS PD L+F+RMGDFYELF+DDA A+R L ITLT+RG G IPM GVPV Sbjct: 1 MKQFFAAKSDYPDLLLFFRMGDFYELFYDDARKAARLLDITLTQRGSSGGAPIPMAGVPV 60 Query: 89 HTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPT 148 H Y+ +L+ +G +AICEQI P AK LV R VVR+VTPGT+T++ LL Sbjct: 61 HAYEGYLARLVALGESVAICEQIGDPALAK-----GLVERKVVRIVTPGTVTDEALLDER 115 Query: 149 DSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEKELSHA 207 LMA++R + + +AW D++ G F ++ + D L ++I R++P E++ +++ Sbjct: 116 RDTLLMAISRSKQGYGLAWADLAGGRFLVNEVDSVDALEAEIARLEPAELLVPDED---- 171 Query: 208 EYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAIS 265 + G + V + P FD ++ ++ + + FG AA A + Sbjct: 172 NWPEFLR--GRIGVRRRPPWLFDADSGRRQLLAFFKLHDLSGFGIDDKPCATAAAGALLG 229 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y+++TQ P + E + +++A R +LE+ + G +LL +D ++T Sbjct: 230 YVEETQKQRLPHLTSIAMEVASEAISMNAATRRHLELDTRVDGDTRNTLLGVLDSTVTPM 289 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 GGRL + PL + R ++ I + + +++ ++ D+ R L+R+ + Sbjct: 290 GGRLLRRWLHRPLRLRDVLVHRHHAVASLIDSGADAD-VREAFRALGDLERILTRVALRS 348 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPT 445 P+D + +RDG+ + L D P L+ +L + + L S +++ P Sbjct: 349 ARPRDFSTLRDGLALLPKVRTLLAPLDSPR-LQTLFAELGE-HNATAHLLISAVAEQPPL 406 Query: 446 FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEV 505 DGG + G DA LDE R L + + + L+ + + I LK+ +N GY+IE+ Sbjct: 407 KLSDGGVIATGYDADLDELRRLSTNADQFLIDLEQRERASSGIATLKVGYNRVHGYYIEI 466 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEIL 565 + A ++ + RQT++N R+ T EL E+++ +A +L E +E L Sbjct: 467 SKGQAD------KAPLHYSRRQTLTNAERYITEELKSFEDKVLSARERSLSREKLLYEGL 520 Query: 566 SNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKT 625 +A+ + E L + ++ +D+ A A A+ ++ +P +D++ ++ GRHP+VE Sbjct: 521 LDALGSELEGLKRCAGALSELDVLAAFAERAQALDWSQPELDSAPCLRIERGRHPVVEAV 580 Query: 626 LKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPA 685 Q PF ND +L ++ ++TGPNMGGKST++RQNALIV++A +GS+VPA Sbjct: 581 RDQ----PFEPNDLELHADR-----RMLVITGPNMGGKSTYMRQNALIVLLAHIGSFVPA 631 Query: 686 SYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATL 745 S A IG +D++ +R+G+ D+LA G+STFMVEM ET+ IL+ AT QS V++DEIGRGT+T Sbjct: 632 SRAIIGPIDRILTRIGAGDDLARGQSTFMVEMAETSYILHHATPQSLVLMDEIGRGTSTY 691 Query: 746 DGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK-----SLKRFHNATLQVSDSNEGII 800 DGL++A A +L TNRC L ATH+ ELT L+ N L + E ++ Sbjct: 692 DGLALADAVARHLAHTNRCYTLFATHYFELTALADESHAGGASGIANVHLDAVEHGERLV 751 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 F+H V G A+ S+G+QV LAGLP +++A L E+ + + + Sbjct: 752 FMHAVKDGPANRSFGLQVAALAGLPKAAVTQARRRLAELEQRGGESHS-AHMAPAALDAP 810 Query: 861 ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + + E ++ L DE++P AL+ LY +KA Sbjct: 811 QQFGLFTAPSSAAQEALQALEPDELTPKQALEALYRLKA 849 >gi|288800639|ref|ZP_06406096.1| DNA mismatch repair protein MutS [Prevotella sp. oral taxon 299 str. F0039] gi|288332100|gb|EFC70581.1| DNA mismatch repair protein MutS [Prevotella sp. oral taxon 299 str. F0039] Length = 873 Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust. Identities = 285/830 (34%), Positives = 456/830 (54%), Gaps = 41/830 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI- 81 K TPMM+Q+ K +PD+++ +R GDFYE + DA+ AS+ LGITLTKR + Sbjct: 6 KGLTPMMKQFFTFKHQHPDAILLFRCGDFYETYSQDAVEASKILGITLTKRNNGGSSAVT 65 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 M G P H + Y+ KL++ G R+AIC+Q+E P KK LV+R + LVTPG Sbjct: 66 EMAGFPHHALDTYLPKLVRAGRRVAICDQLEDPKLTKK-----LVKRGITELVTPGVALA 120 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 D +L+ ++N+L A+ + IA++DISTG F ++D + ++ P+E++F Sbjct: 121 DNVLNYKENNFLAAIHFGKASCGIAFLDISTGEFLTGEGSYDTIEKLLVNFSPKEVLFDR 180 Query: 202 KELSHAEYKSLFETLGN--VAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 + ++ F G+ + F S + ++ ++ T+ FG Sbjct: 181 D--NKQQFNQYF---GDKYCTFELDDWVFTESTARQKLLKHFGTQTLKGFGIDHLTNGII 235 Query: 260 AAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL--SGSREQSLLK 316 A+ AI Y++ TQ N I R + + +D +LE++ ++ GS SLL Sbjct: 236 ASGAIMQYLEITQHTNINHITSISRIEEDRYVRLDKFTIRSLELINSMHEGGS---SLLN 292 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 ID +IT G R+ + PL + I RL+ + + + L D+ R Sbjct: 293 VIDSTITPMGSRMLKRWLVFPLKEQKAIEQRLNVVEHIYNSEDFEQVLSDQLHRIGDLER 352 Query: 377 SLSRLKIGRGEPKDIAVIR---DGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 +SR+ +GR P+++ +R D I I + KN E L E++ L +S+ Sbjct: 353 IISRVAVGRVSPREVVQLRYALDAIEP-IKAACVASKN---ESLVRMGEQIT-LCESIRA 407 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 ++ ++ D P GG + DG + LDE R++ K + +Q + E+T I +LKI Sbjct: 408 RIAKEITSDPPQLVNKGGVIADGVNPELDELRAISHSGKDYLLHIQEREVEQTGISSLKI 467 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +NN GY++EV + + KD + ++ +QT++ R+ T EL + E +I A + Sbjct: 468 GYNNVFGYYLEVRN-----MHKD-KVPQEWVRKQTLAQAERYITQELKEYEEKILGAEDK 521 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 L +E + F L A+ E + + +IA ID + A +A+ +Y RP I+N+ Sbjct: 522 ILALEAQIFNDLIAALQEFIPQIQINANIIARIDCLHSFASVAQSNHYVRPEINNTEVLD 581 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +K GRHP++E L + ++ ND L D ++ ++TGPNM GKS LRQ ALI Sbjct: 582 IKAGRHPVIEMQLP--IGERYVPNDILL----DSEKQQIMMITGPNMAGKSALLRQTALI 635 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 V++AQ+GS+VPA A IG+VDK+F+RVG++DN++ G STFMVEM E A+ILN +++S + Sbjct: 636 VLLAQVGSFVPAHSASIGVVDKIFTRVGASDNISVGESTFMVEMTEAANILNNVSSRSLI 695 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHET--NRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 + DE+GRGT+T DG+SIAWA +EYLHE R R L ATH+HEL ++ K +R N + Sbjct: 696 LFDELGRGTSTYDGISIAWAIVEYLHEQPKARARTLFATHYHELNEMEKRFERIKNFNVS 755 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 V ++N ++F+ K++ G ++HS+GI V +AG+P +++ RA ILK EK Sbjct: 756 VKEANGKVMFMRKLVEGGSEHSFGIHVADIAGMPKSIVKRANVILKQLEK 805 >gi|251766515|gb|ACC61787.1| DNA mismatch repair protein [Streptococcus pneumoniae] Length = 844 Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust. Identities = 293/883 (33%), Positives = 477/883 (54%), Gaps = 58/883 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEISLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI+ G+++AI EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPYHSAQQYIDVLIEQGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSSK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEKEL 204 + +N+L+A+ R ++ +A++D+ TG F ++ L+ +I + RE++ +L Sbjct: 121 PDSQNNFLVALDRDGNQFGLAYMDLVTGDFYVTGLLDFTLVCGEIRNLKAREVVLG-YDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E + L + V + F D + + R+A VE+ AA+ + Sbjct: 180 SEEEEQILSRQMNLVLSYEKEGFEDIHLLDPRLA---------------AVEQAAASKLL 224 Query: 265 SYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 Y+ +TQM KP I Y +I+ L +D A +++L+++ SG ++ SL +D Sbjct: 225 RYVHRTQMRELNHLKPVIRY----EIKDFLQMDYATKASLDLVENARSGKKQGSLFWLLD 280 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL I PL D +I R + + F+ + + + LK D+ R S Sbjct: 281 ETKTAMGMRLLRSWIHRPLIDKERIVQRQEVVQVFLDHFFERSDLTDSLKGVYDIERLAS 340 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G+ PKD+ + + S I + + P L + +L +P+ LE +S+ + Sbjct: 341 RVSFGKTNPKDLLQLATTLSSVPRIRAILEGMEQPT-LAYLIAQLDAIPE-LESLISAAI 398 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + + P DGG +R G D +LD+ R + + IA ++ K E + I LKI +N Sbjct: 399 APEAPHVITDGGIIRTGFDETLDKYRCVLREGTSWIAEIEAKERENSGISTLKIDYNKKD 458 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+ VT+S + F + T+ N RF T EL +E + A + +E Sbjct: 459 GYYFHVTNSQLGNVPA------HFFRKATLKNSERFGTEELARIEGDMLEAREKSANLEY 512 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F + + + + L +Q IA +D+ +LA++A+ Q+ RP + + ++ GRH Sbjct: 513 EIFMRIREEVGKYIQRLQALAQGIATVDVLQSLAVVAETQHLIRPEFGDDSQIDIRKGRH 572 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 +VEK + Q+ +I N ++ + L+TGPNM GKST++RQ A+ +MAQ+ Sbjct: 573 AVVEKVMGAQT---YIPNTIQMA-----EDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQL 624 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPA AH+ I D +F+R+G+AD+L SG+STFMVEM+E + ++ AT S ++ DE+G Sbjct: 625 GSYVPAESAHLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELG 684 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A + IEY+HE + L ATH+HELT L SL+ N + + + + Sbjct: 685 RGTATYDGMALAQSIIEYIHEHIGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQV 744 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 FLHK+ PG AD SYGI V K+AGLP +++RA IL E + MR QT Sbjct: 745 TFLHKIEPGPADKSYGIHVAKIAGLPADLLARADKILTQLENQGTESPPPMR------QT 798 Query: 860 KESKNNLSKNDKL----FVEKIKCLNLDEMSPLTALKTLYAVK 898 +S D+ + ++ L++ M+P+ + L +K Sbjct: 799 SAVTEQISLFDRAEEHPILAELAKLDVYNMTPMQVMNVLVELK 841 >gi|325971227|ref|YP_004247418.1| DNA mismatch repair protein MutS [Spirochaeta sp. Buddy] gi|324026465|gb|ADY13224.1| DNA mismatch repair protein MutS [Spirochaeta sp. Buddy] Length = 865 Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust. Identities = 305/892 (34%), Positives = 500/892 (56%), Gaps = 58/892 (6%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 +E + TPMM QY +IK + +++F+R+GDFYE+F DA+ SR L +TLTKR Sbjct: 1 METEAEKLTPMMVQYRQIKEQHQQTILFFRLGDFYEMFEQDAVEVSRLLNLTLTKRNGQ- 59 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 PMCG+P H A YI++L++ G +IAICEQ E P G + L +R VV++VTP Sbjct: 60 ----PMCGIPYHAAKVYIKRLLEAGKKIAICEQTELP-----EGGRQLAKREVVQVVTPA 110 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST----SNHDRLISDIMRID 193 T+ E+ L +++++++ + +I++ DI++G F + S + L+S + +++ Sbjct: 111 TVVEEDFLEANRDSFVVSLSFQKQGLSISYADITSGQFFLRMVEKDSRYAMLLSVLQQVN 170 Query: 194 PREIIFSEKE-LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSF 252 PREI+ +E + + +++SL + + P+ F S +R+ ++ T++ FG Sbjct: 171 PREILVNEDDYFLYQDFQSLIDAHPAMVTKLPSWHFSISEGYTRLCNHIGSTSLKAFGLE 230 Query: 253 SQVEKTAAAAAI-SYIKKTQMVNKPTI-GYPEREDIQSTLFIDSAARSNLEILRTLS-GS 309 ++ ++A A+ Y+K+T + I GY + L ID A+R +LE+L L+ G+ Sbjct: 231 NKNPMLSSAGALLWYLKETAKTSLNQIEGYTLVSE-SEYLHIDEASRKSLELLANLADGT 289 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 + +L +I+ ++T G RL + IASPLTD +I R + ++ + ++ LK Sbjct: 290 EKYTLFSSINATLTSMGARLLKQWIASPLTDRERIRFRQSWVTLLCEDRDELARVRSHLK 349 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILN----LFLKNDLPEELRGAVEKLK 425 D+ R SRL + R PKD+ I +R+ N+++ L + L E+ ++ + Sbjct: 350 MVLDLQRLSSRLVMHRHLPKDLVGISQTVRAFFNLVDDRYHPLLGDALCEQTLSSLAIMA 409 Query: 426 KLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE 485 K +++ +SDD +G + G DA LD RS++ K I+ K +E Sbjct: 410 K-------SIADGISDDHQGPFEEGKVIVTGFDAELDTLRSIKGGGKAILDVYLDKVRQE 462 Query: 486 TKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 T I L++ N LG+FIEV+ + A + F +QT+ N RFT+ ELI E Sbjct: 463 TGITTLRLSSNKILGHFIEVSKNQAE------KVPSTFYRKQTLVNAERFTSDELIACEQ 516 Query: 546 RITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPI 605 +I + A E + +E L ++ ++L S+ ++ +D + A A +YC+P Sbjct: 517 KILASAFEAEKRERQVYESLVEEVMNHQQALLAISRFLSELDCLQSFASTAITHSYCKPT 576 Query: 606 IDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGK-LWLLTGPNMGGKS 664 + + GRHP+VE+ L + FIAND +S ++GK L+TGPNM GKS Sbjct: 577 FTDEDVLEFEGGRHPVVEQHL---GTGQFIANDLTIS-----STGKRFCLITGPNMAGKS 628 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 TFLRQ AL+VI++Q+GSYVPA+ A +GIVDKL+ RVG++DNLA G STF+VEM E A IL Sbjct: 629 TFLRQTALLVILSQIGSYVPATKARLGIVDKLYCRVGASDNLARGESTFLVEMQEAAHIL 688 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR 784 AT S VI+DE+GRGT+T DG+SIA+A ++ L + + L ATH+HEL + S + Sbjct: 689 RTATRNSLVIVDELGRGTSTQDGMSIAYAIMQQLLGM-QAKALFATHYHELARIDTSALQ 747 Query: 785 FHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYH 844 TLQVS+ + FL +VI GIA+ SYG+ V ++AG+ V++ A +TF+K H Sbjct: 748 L--LTLQVSEMGGQVRFLRRVIEGIANSSYGLNVARMAGIGREVLAHA----RTFQK-QH 800 Query: 845 HNQKDMRLYYPEIQTK---ESKNNL--SKNDKLFVEKIKCLNLDEMSPLTAL 891 + D+ P++ + ES + + ++ + +++ ++++ SPL AL Sbjct: 801 FAEYDLGSIQPDLFSAIGDESAQQVLYDETEQEILYQLRSFSIEQSSPLQAL 852 >gi|322377998|ref|ZP_08052485.1| DNA mismatch repair protein MutS [Streptococcus sp. M334] gi|321280980|gb|EFX57993.1| DNA mismatch repair protein MutS [Streptococcus sp. M334] Length = 844 Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust. Identities = 294/883 (33%), Positives = 477/883 (54%), Gaps = 58/883 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEISLTSRNKNADNPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI+ G+++AI EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPYHSAQQYIDVLIEQGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSSK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEKEL 204 + +N+L+A+ R ++ +A++D+ TG F ++ L+ +I + RE++ L Sbjct: 121 PDSQNNFLVAIDRDGNQFGLAYMDLVTGDFYVTGLLDFTLVCGEIRNLKAREVVLGYG-L 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E + L + V + F D + +SR+A VE+ A++ + Sbjct: 180 SEEEEQILSRQMNLVLSYEKESFEDLHLLDSRLA---------------TVEQAASSKLL 224 Query: 265 SYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 Y+ +TQM KP I Y +I+ L +D A +++L+++ SG ++ SL +D Sbjct: 225 QYVHRTQMRELNHLKPVIRY----EIKDFLQMDYATKASLDLVENARSGKKQGSLFWLLD 280 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL I PL D +I R + + F+ + + + LK D+ R S Sbjct: 281 ETKTAMGMRLLRSWIHRPLIDKERIVQRQEVVQVFLDHFFERSDLTDSLKGVYDIERLAS 340 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G+ PKD+ + + S I + + P L +E+L +P+ LE +S+ + Sbjct: 341 RVSFGKTNPKDLLQLVTTLSSVPRIRAILEGMEQPA-LAYLIEQLDGIPE-LESLISAAI 398 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + + P +GG +R G D +LD+ R + + IA ++ K E + I LKI +N Sbjct: 399 APEAPHVITEGGIIRTGFDETLDKYRRVLREGTGWIAEIEAKERENSGISTLKIDYNKKD 458 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+ VT+S + F + T+ N RF T EL +E + A + +E Sbjct: 459 GYYFHVTNSQLGNVPA------HFFRKATLKNSERFGTEELARIEGDMLEAREKSANLEY 512 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F + + + + L +Q IA +D+ +LA++A+ Q+ RP + ++ GRH Sbjct: 513 EIFMRIREEVSKYIQRLQALAQGIATVDVLQSLAVVAETQHLIRPEFGEDSRIDIQKGRH 572 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 +VEK + Q+ +I N ++ + L+TGPNM GKST++RQ A+ +MAQ+ Sbjct: 573 AVVEKVMGAQT---YIPNTIQMA-----EDTSIQLITGPNMSGKSTYMRQLAMTAVMAQL 624 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPA AH+ I D +F+R+G+AD+L SG+STFMVEM+E + ++ AT S ++ DE+G Sbjct: 625 GSYVPAESAHLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELG 684 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A + IEY+HE + L ATH+HELT L SL+ N + + + + Sbjct: 685 RGTATYDGMALAQSIIEYIHEHIGAKTLFATHYHELTSLESSLEHLVNVHVATLEQDGQV 744 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 FLHK+ PG AD SYGI V K+AGLP +++RA IL E + MR QT Sbjct: 745 TFLHKIEPGPADKSYGIHVAKIAGLPADLLARADKILTQLESQGTESPAPMR------QT 798 Query: 860 KESKNNLSKNDKL----FVEKIKCLNLDEMSPLTALKTLYAVK 898 +S D + ++ L++ M+P+ A+ L +K Sbjct: 799 SAVTEQISLFDTAEEHPILAELAKLDVYNMTPMQAMNVLVELK 841 >gi|288801817|ref|ZP_06407259.1| DNA mismatch repair protein MutS [Prevotella melaninogenica D18] gi|288335859|gb|EFC74292.1| DNA mismatch repair protein MutS [Prevotella melaninogenica D18] Length = 886 Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust. Identities = 283/835 (33%), Positives = 462/835 (55%), Gaps = 38/835 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL-GKDI 81 K TPMM+Q+ +K+ +P +L+ +R GDFYE + +DA+ ++R LGITLT+R G I Sbjct: 6 KGLTPMMKQFFSMKAQHPGALMLFRCGDFYETYGEDAVESARILGITLTRRNNGGNGDSI 65 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKK--RGNKSL------VRRNVVRL 133 M G P H + Y+ KLI+ G R+AIC+Q+E P + ++ +G K L V+R + L Sbjct: 66 EMAGFPHHALDTYLPKLIRAGKRVAICDQLEDPKKKREEIKGKKCLSAMDKMVKRGITEL 125 Query: 134 VTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRID 193 VTPG D +L+ ++N+L AV + ++++DISTG F D + + Sbjct: 126 VTPGVAMSDNVLNYKENNFLAAVHFGKGSCGVSFLDISTGEFLTGEGTFDYVEKLLGNFQ 185 Query: 194 PREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS 253 P+E++F + +++ F T VF D + + ++ ++ + FG Sbjct: 186 PKEVLFDRAK--KQDFERYFGTRLCTFEMDDWVFTDQT-ARQKLLKHFGTKNLKGFGVDH 242 Query: 254 QVEKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS--GSR 310 AA AI Y++ TQ I R + + +D +LE++ ++ GS Sbjct: 243 LNNGVVAAGAILQYLEITQHTQINHITSLARIEEDKYVRMDRFTIRSLELIAPMNEDGS- 301 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 SLL ID +IT GGR+ + PL D IN RLD +++ + P I + Sbjct: 302 --SLLNVIDNTITPMGGRMLRRWMVFPLKDEKPINERLDVVDYLFREPDFRECINEQFHR 359 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLP 428 D+ R +S++ +GR P+++ +++ + + + L+ K+D L+ E+L L Sbjct: 360 IGDLERIISKVAVGRVSPREVVQLKNALMAIQPVKTACLYAKSD---TLKRIGEQLN-LC 415 Query: 429 QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 +SL + + D P G + G + LD+ RS+RD K+ + +Q K +T I Sbjct: 416 ESLRDRIEKEIQPDPPQLVNKGDVIALGFNQELDDLRSIRDNGKQYLLEIQEKEIAQTGI 475 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 +LKI NN GY++EV ++ + ++ +I +QT++ R+ T EL + E +I Sbjct: 476 TSLKIGFNNVFGYYLEVRNTFKDKVPEN------WIRKQTLAQAERYITPELKEYEEKIL 529 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 A L +E + + L + E + + +IA +D ++ +++ Q Y RP++D+ Sbjct: 530 GADEKILALETQLYMELIQDMQEFIPQIQINANLIAHLDCLLSFMKVSQLQRYVRPVVDD 589 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 S +K GRHP++E L + ++ ND L D ++ ++TGPNM GKS LR Sbjct: 590 SEVIDIKQGRHPVIETQLP--IGEQYVPNDVLL----DTEHQQIMMITGPNMAGKSALLR 643 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q ALIV++AQ+G +VPA A IG+VDK+F+RVG++DN++ G STFMVEM E ++ILN T Sbjct: 644 QTALIVLLAQIGCFVPAERARIGMVDKIFTRVGASDNISLGESTFMVEMTEASNILNNVT 703 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFH 786 ++S V+ DE+GRGT+T DG+SIAWA +EYLHE +R R L ATH+HEL ++ K+ R Sbjct: 704 SRSLVLFDELGRGTSTYDGISIAWAIVEYLHEHSRAQARTLFATHYHELNEMEKNFPRIK 763 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 N + V + + IIF+ K+ G ++HS+GI V ++AG+P +++ RA ILK EK Sbjct: 764 NFNVSVKEVDGKIIFVRKLEKGGSEHSFGIHVAEIAGMPRSIVKRANIILKELEK 818 >gi|302344788|ref|YP_003813141.1| DNA mismatch repair protein MutS [Prevotella melaninogenica ATCC 25845] gi|302149251|gb|ADK95513.1| DNA mismatch repair protein MutS [Prevotella melaninogenica ATCC 25845] Length = 886 Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust. Identities = 285/835 (34%), Positives = 462/835 (55%), Gaps = 38/835 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL-GKDI 81 K TPMM+Q+ +K+ +P +L+ +R GDFYE + +DA+ ++R LGITLT+R G I Sbjct: 6 KGLTPMMKQFFSMKAQHPGALMLFRCGDFYETYGEDAVESARILGITLTRRNNGGNGDSI 65 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKK--RGNKSL------VRRNVVRL 133 M G P H + Y+ KLI+ G R+AIC+Q+E P + ++ +G K L V+R + L Sbjct: 66 EMAGFPHHALDTYLPKLIRAGKRVAICDQLEDPKKKREAIKGKKGLSAMDKMVKRGITEL 125 Query: 134 VTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRID 193 VTPG D +L+ ++N+L AV + ++++DISTG F D + + Sbjct: 126 VTPGVAMSDNVLNYKENNFLAAVHFGKGSCGVSFLDISTGEFLTGEGTFDYVEKLLGNFQ 185 Query: 194 PREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS 253 P+E++F + +++ F T VF D + + ++ ++ + FG Sbjct: 186 PKEVLFDRAK--KQDFERYFGTRLCTFEMDDWVFTDQT-ARQKLLKHFGTKNLKGFGVDH 242 Query: 254 QVEKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS--GSR 310 AA AI Y++ TQ I R + + +D +LE++ ++ GS Sbjct: 243 LNNGVVAAGAILQYLEITQHTQINHITSLARIEEDKYVRMDRFTIRSLELIAPMNEDGS- 301 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 SLL ID +IT GGR+ + PL D IN RLD +++ + P I + Sbjct: 302 --SLLNVIDNTITPMGGRMLRRWMVFPLKDEKPINERLDVVDYLFREPDFRECINEQFHR 359 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLP 428 D+ R +S++ +GR P+++ +++ + + + + L+ K+D L+ E+L L Sbjct: 360 IGDLERIISKVAVGRVSPREVVQLKNALMAIQPVKTVCLYTKSD---TLKRIGEQLN-LC 415 Query: 429 QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 +SL + + D P G + G + LD+ RS+RD K+ + +Q K +T I Sbjct: 416 ESLRDRIEKEIQPDPPQLVNKGDVIALGFNQELDDLRSIRDNGKQYLLEIQEKEIAQTGI 475 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 +LKI NN GY++EV ++ KD + + +I +QT++ R+ T EL + E +I Sbjct: 476 TSLKIGFNNVFGYYLEVRNTF-----KD-KVPENWIRKQTLAQAERYITPELKEYEEKIL 529 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 A L +E + + L + E + + +IA +D ++ +++ Q Y RP++D+ Sbjct: 530 GADEKILALETQLYMELIQDMQEFIPQIQINANLIAHLDCLLSFMKVSQLQRYVRPVVDD 589 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 S +K GRHP++E L + ++ ND L D ++ ++TGPNM GKS LR Sbjct: 590 SEVIDIKQGRHPVIETQLP--IGEQYVPNDVLL----DTEHQQIMMITGPNMAGKSALLR 643 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q ALIV++AQ+G +VPA A IG+VDK+F+RVG++DN++ G STFMVEM E ++ILN T Sbjct: 644 QTALIVLLAQIGCFVPAERARIGMVDKIFTRVGASDNISLGESTFMVEMTEASNILNNVT 703 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFH 786 +S V+ DE+GRGT+T DG+SIAWA +EYLHE +R R L ATH+HEL ++ K+ R Sbjct: 704 PRSLVLFDELGRGTSTYDGISIAWAIVEYLHEHSRAQARTLFATHYHELNEMEKNFPRIK 763 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 N + V + IIF+ K+ G ++HS+GI V ++AG+P +++ RA ILK EK Sbjct: 764 NFNVSVKQVDGKIIFVRKLEKGGSEHSFGIHVAEIAGMPRSIVKRANVILKELEK 818 >gi|303228559|ref|ZP_07315387.1| DNA mismatch repair protein MutS [Veillonella atypica ACS-134-V-Col7a] gi|302516806|gb|EFL58720.1| DNA mismatch repair protein MutS [Veillonella atypica ACS-134-V-Col7a] Length = 873 Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust. Identities = 303/896 (33%), Positives = 488/896 (54%), Gaps = 52/896 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TPMM QY++IKS + D L+F+R+GDFYELF +DAL+ASR L ITLT R + P Sbjct: 3 KKVTPMMEQYLDIKSRHCDELLFFRLGDFYELFNEDALIASRELNITLTGRPTGNEERTP 62 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP H A YI+ L+K G+++AICEQ+E P + K +V+R+V++++TPGT+ + Sbjct: 63 MCGVPFHAAESYIETLVKKGYKVAICEQLEDP-----KAVKGIVKRDVIQVITPGTVMTE 117 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIF---KISTSNHDRLISDIMRIDPREIIF 199 +N+L ++ W + + D+STG ++ N ++ + P EII Sbjct: 118 NGNDARSNNFLALFYLVKEAWILVFSDVSTGEVIWDRVPQVNISQIYDSLSMYRPAEIIV 177 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 E + N V P F+ ++A+ + F +E+ Sbjct: 178 PEGTILPQSIVDFIHNQFNNVVLSPFTSFESVEHACKLANNH-------FQDMGLMEEDV 230 Query: 260 AAA---AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLL 315 AA + Y++ I Y + D+ + L +D+++ +LEI L G + +LL Sbjct: 231 LAALGFMLLYLQDVIKTEIAHINYAHQMDVGNRLILDTSSLRHLEITHNLRDGGVKGTLL 290 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D ++T G RL + + SPLTD + I R ++ I IQ L D Sbjct: 291 DVLDRTLTPMGARLLKQWLESPLTDISTIQRRQAAVAELISRNGERCEIQSYLDCIYDFE 350 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRG----AVEKLKKLPQSL 431 R + R++ G P+D +R+ ++ +I NL +E G ++ + Sbjct: 351 RIVGRIETGSVSPRDFTSLRESLQVLPHIKNLL------KEFSGLSLSSINTRIDNHADI 404 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 L+ +++ +DG +RDG + LDE RSL S+ + L+ K EET +K L Sbjct: 405 YDLLNRAIAEQPALTLKDGRVIRDGYNEELDELRSLATNSEVWLQKLEDKAREETGLK-L 463 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 K K+N GYF EV+ S + FI +QT N R+ T +L + E +I +A Sbjct: 464 KTKYNKVFGYFFEVSKSQIDKVPA------YFIRKQTTVNAERYITPDLKEFEIKILSAK 517 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + +E + ++ L N I + + ++ +A +D+ +LA +A E NY P I + Sbjct: 518 EKIVSLEQQLYQDLRNQIKGVIKKVQETARALAELDVLASLATVAYESNYICPNIVLNGQ 577 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 ++DGRHP++EK LK++ F+ ND L+ +++ L+TGPNM GKST++RQ A Sbjct: 578 INIRDGRHPVIEKFLKREV---FVPNDVVLNHDDEE----FMLITGPNMAGKSTYMRQVA 630 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 +++IMAQ+GS++PA A I VD++F+RVG++D++++G+STFMVEM E A IL AT++S Sbjct: 631 ILMIMAQIGSFIPAREATISPVDRVFTRVGASDDISTGQSTFMVEMKEVAYILENATSKS 690 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 +ILDEIGRGT+T DGLSIA A +E++ + + L ATH+HEL L R N T+ Sbjct: 691 LIILDEIGRGTSTFDGLSIAQAVVEHICKHIHAKTLFATHYHELIPLEDVYPRLKNYTVA 750 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM- 850 V + + I FL ++I G AD SYGI V KLAGLP V+ RA IL++ E+ + + D+ Sbjct: 751 VKEKGKDIAFLRRIIRGGADRSYGIHVAKLAGLPAQVLKRAEVILESLEE-QNTDTDDLN 809 Query: 851 -RLYYPEIQTKESKNNLSKND--KLF----VEKIKCLNLDEMSPLTALKTLYAVKA 899 R+ + K +K ++ ++D LF V+ + ++++ M+P+ AL ++ ++A Sbjct: 810 NRVITSDSVVKYTKPSIEQDDFGNLFTHSVVDSLLAIDVNTMTPIEALNAIHQLQA 865 >gi|239816562|ref|YP_002945472.1| DNA mismatch repair protein MutS [Variovorax paradoxus S110] gi|259511177|sp|C5CTL8|MUTS_VARPS RecName: Full=DNA mismatch repair protein mutS gi|239803139|gb|ACS20206.1| DNA mismatch repair protein MutS [Variovorax paradoxus S110] Length = 885 Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust. Identities = 302/905 (33%), Positives = 486/905 (53%), Gaps = 70/905 (7%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 + TPMM QY+ +K+ +PD+L+FYRMGDFYELF+ DA A+R L ITLT+RG+ G+ Sbjct: 14 DFSGHTPMMAQYLGLKANHPDTLLFYRMGDFYELFWADAEKAARLLDITLTQRGQSAGQP 73 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 + MCGVP H + Y+ +LIK+G +AICEQ+ + +K V R VVR+VTPGTLT Sbjct: 74 VVMCGVPFHAVDTYLARLIKLGESVAICEQV-----GEVGASKGPVERKVVRVVTPGTLT 128 Query: 141 EDQLLSPTDSNYLMAV-ARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 + +LL+ + L+AV A R +AW+ ++ +++ D L + I RI P E+++ Sbjct: 129 DSELLNDKSESLLLAVHAGTRNFCGLAWLSVTGAELRLAECPADALEAWIARIAPSELLY 188 Query: 200 SEKELSHAEYKSLFETLGNVAVA--------QPNVFFDHSISESRIADYYNITTVDTFGS 251 S AE FE A A +P FD + E ++++ ++ + + Sbjct: 189 S------AEVTPAFEQRLKAARAATPFTLSIRPAWQFDGGLGERKLSEQMGSNSLAAWNA 242 Query: 252 FSQVEKTAAAA------------AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSN 299 S AAAA A+S++++ + ER+ + + R N Sbjct: 243 ESLANAHAAAAALLGYAEHTQGRALSHVQRLSV---------ERDG--DLVELPPTTRRN 291 Query: 300 LEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPI 359 LE+++TL G +L +D +TG G RL + SP D + RL++I +Q+ + Sbjct: 292 LELVQTLRGEDSPTLFSLLDTCMTGMGSRLLKRWLLSPRRDRGEAQARLEAIAA-LQSTV 350 Query: 360 L------INPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDL 413 L +++ LK++ DV R +R+ + + P+++ +R + + + Sbjct: 351 LGGTAAPWRTLREQLKNTSDVERIAARIALRQVRPRELLALRLALAKAEQLAPALPASG- 409 Query: 414 PEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKR 473 E L G +E+L P L+S + D RDGG + G DA LDE R++ + Sbjct: 410 -ELLGGIIERLAP-PSGCADLLASAIKPDPSALVRDGGVIATGHDAELDELRAISENCDD 467 Query: 474 IIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLT 533 + L++ E T I NL+++ N G++IEVT S+ S + D + RQT+ N Sbjct: 468 FLLKLEVSERERTGISNLRVQFNRVHGFYIEVTQSALSKVP------DNYRRRQTLKNAE 521 Query: 534 RFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALA 593 RF T EL E++ +A + AL E +E L +A+ +L + IA +D ALA Sbjct: 522 RFITPELKAFEDKALSAQDRALAREKWLYEQLLDALQPSVPALTQLAGAIATLDALCALA 581 Query: 594 ILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLW 653 + ++ P + ++ GRHP+VE L ++SS FIAND L P + + Sbjct: 582 ERSHTLHWRAPSFVSHPCIEIQQGRHPVVEARLAEKSSGGFIANDTQLG-PQQR----MQ 636 Query: 654 LLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTF 713 ++TGPNMGGKST++RQ A+IV++A +GS+VPA+ +G +D + +R+G+AD+LA+ +STF Sbjct: 637 VITGPNMGGKSTYMRQVAIIVLLASIGSHVPAAACRLGPIDAIHTRIGAADDLANAQSTF 696 Query: 714 MVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFH 773 M+EM E A IL+ AT QS V++DEIGRGT+T DGL++A LH+ ++ L ATH+ Sbjct: 697 MLEMTEAAQILHSATAQSLVLMDEIGRGTSTFDGLALAAGIAAQLHDRSKAFTLFATHYF 756 Query: 774 ELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAY 833 ELT+ + N + +++ I+FLH++ PG A SYGIQV +LAG+P V++ A Sbjct: 757 ELTEFPATHHCAVNMHVSATEAGRDIVFLHEMQPGPASKSYGIQVARLAGMPAAVVNHAR 816 Query: 834 DILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKT 893 L+ E + + + L+ P + + ++ + L+ D M+P AL Sbjct: 817 QALEALESQHAQTRAQVDLFAPPPAAETPMASAVES------ALAALDPDAMTPREALDA 870 Query: 894 LYAVK 898 LYA++ Sbjct: 871 LYALQ 875 >gi|90109863|sp|Q4US90|MUTS_XANC8 RecName: Full=DNA mismatch repair protein mutS Length = 873 Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust. Identities = 293/887 (33%), Positives = 472/887 (53%), Gaps = 48/887 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M+Q+ KS PD L+F+RMGDFYELF+DDA A+R L ITLT+RG G IPM G Sbjct: 20 TPLMKQFFAAKSDYPDLLLFFRMGDFYELFYDDARKAARLLDITLTQRGSSGGAPIPMAG 79 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH Y+ +L+ +G +AICEQI P AK LV R VVR+VTPGT+T++ LL Sbjct: 80 VPVHAYEGYLARLVALGESVAICEQIGDPALAK-----GLVERKVVRIVTPGTVTDEALL 134 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEKEL 204 LMA++R + + +AW D++ G F ++ + D L ++I R++P E++ +++ Sbjct: 135 DERRDTLLMAISRSKQGYGLAWADLAGGRFLVNEVDSVDALEAEIARLEPAELLVPDED- 193 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAA 263 F +P FD ++ ++ + + FG AA A Sbjct: 194 ----NWPEFLRGRVGVRRRPPWLFDADSGRRQLLAFFKLHDLSGFGIDDKPCATAAAGAL 249 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 + Y+++TQ P + E + +++A R +LE+ + G +LL +D ++T Sbjct: 250 LGYVEETQKQRLPHLTSIAMEVASEAISMNAATRRHLELDTRVDGDTRNTLLGVLDSTVT 309 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 GGRL + PL + R ++ I + +++ ++ D+ R L+R+ + Sbjct: 310 PMGGRLLRRWLHRPLRLREVLVQRHHAVGSLIDTGADTD-VREAFRALGDLERILTRVAL 368 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK------TLSS 437 P+D + +RDG+ + + D P +L+ L L + L S Sbjct: 369 RSARPRDFSTLRDGLALLPKVRTILAPLDSP--------RLQTLYAELGEHDATAHLLIS 420 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 +++ P DGG + G DA LDE R L + + + L+ + + I LK+ +N Sbjct: 421 AVAEQPPLKFSDGGVIATGYDADLDELRRLSTNADQFLIDLEQRERASSGIATLKVGYNR 480 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IE++ A ++ + RQT++N R+ T EL E+++ +A +L Sbjct: 481 VHGYYIEISKGQAE------KAPLHYSRRQTLTNAERYITEELKSFEDKVLSARERSLSR 534 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E +E L +A+ + E L + ++ +D+ A A+ ++ +P ++++ ++ G Sbjct: 535 EKLLYEGLLDALGGELEGLKRCASALSELDVLAGFAERAQALDWSQPELESAPCLHIERG 594 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE Q PF ND DL P+ + + ++TGPNMGGKST++RQNALIV++A Sbjct: 595 RHPVVEAVRDQ----PFEPNDLDLH-PDRR----MLVITGPNMGGKSTYMRQNALIVLLA 645 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GSYVPAS A IG +D++ +R+G+ D+LA G+STFMVEM ET+ IL+ AT QS V++DE Sbjct: 646 HIGSYVPASRAVIGPIDRILTRIGAGDDLARGQSTFMVEMAETSYILHHATPQSLVLMDE 705 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR-----FHNATLQV 792 IGRGT+T DGL++A A +L TNRC L ATH+ ELT L+ + N L Sbjct: 706 IGRGTSTYDGLALADAVARHLAHTNRCYTLFATHYFELTALADASHAGGGSGIANVHLDA 765 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 + E ++F+H V G A+ S+G+QV LAGLP + +A L E+ + + Sbjct: 766 VEHGERLVFMHAVKDGPANRSFGLQVAALAGLPKAAVQQARRRLAELEQ-RGGDSHAAEM 824 Query: 853 YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + + + E ++ L+ DE++P AL+ LY +KA Sbjct: 825 APAALDAPQQFGLFTAPSSAAQEALQALDPDELTPKQALEALYRLKA 871 >gi|229547980|ref|ZP_04436705.1| DNA mismatch repair protein [Enterococcus faecalis ATCC 29200] gi|257091402|ref|ZP_05585763.1| MutS 1 protein [Enterococcus faecalis CH188] gi|307276607|ref|ZP_07557725.1| DNA mismatch repair protein MutS [Enterococcus faecalis TX2134] gi|312905470|ref|ZP_07764584.1| DNA mismatch repair protein MutS [Enterococcus faecalis TX0635] gi|229306856|gb|EEN72852.1| DNA mismatch repair protein [Enterococcus faecalis ATCC 29200] gi|257000214|gb|EEU86734.1| MutS 1 protein [Enterococcus faecalis CH188] gi|306506717|gb|EFM75869.1| DNA mismatch repair protein MutS [Enterococcus faecalis TX2134] gi|310631199|gb|EFQ14482.1| DNA mismatch repair protein MutS [Enterococcus faecalis TX0635] gi|315161299|gb|EFU05316.1| DNA mismatch repair protein MutS [Enterococcus faecalis TX0645] gi|315171154|gb|EFU15171.1| DNA mismatch repair protein MutS [Enterococcus faecalis TX1342] gi|315577076|gb|EFU89267.1| DNA mismatch repair protein MutS [Enterococcus faecalis TX0630] Length = 858 Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust. Identities = 293/897 (32%), Positives = 487/897 (54%), Gaps = 71/897 (7%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM QY+ IK+ D+ +FYR+GDFYELF++DA+ A++ L +TLT R ++ IPMC Sbjct: 7 NTPMMEQYLSIKAQYKDAFLFYRLGDFYELFYEDAINAAQILELTLTSRNRNADDPIPMC 66 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H A YI LI+ G+++AICEQ+E P + K +V+R VV+LVTPGT+ + Sbjct: 67 GVPYHAAQGYIDTLIEQGYKVAICEQVEDP-----KTTKGMVKREVVQLVTPGTVMNSKG 121 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 L D+NYL AV ++ A++D+STG K + ++ + ++++ + +E++ Sbjct: 122 LEAKDNNYLTAVLTDGNQFGFAYVDLSTGELKTAVLADEEGVLNEASALQTKEMVLG--- 178 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + E+L + N+ F + A++ +T + +E Sbjct: 179 ------SGIPESLKENLSLRLNIIFSTQETVEENAEFSFLTN----ELINPLEIEITGKL 228 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 +SY+ TQ + I L +D ++ NLE+ +++ +G ++ +LL +D + Sbjct: 229 LSYLSVTQKRSLSHIQKAVEYQPDHFLKMDHYSKFNLELSQSIRTGQKKGTLLWLLDETK 288 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGRL + + PL +I TR + + + + +Q L + D+ R R+ Sbjct: 289 TAMGGRLLKQWLDRPLIQERQIKTRQEMVQSLLNSYFERLDLQAALTNVYDLERLAGRVA 348 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLK------NDLPEELRGAVEKLKKLPQSLEKTLS 436 G +D+ +R + I L + +DL +L VE L +L ++ Sbjct: 349 FGSVNGRDLIQLRTSLEQVPTIRQLIVGINQGEWDDLLVDL-NPVEDLVEL-------IA 400 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + ++++ P +G ++DG + LDE R K+ +A L+ K +ET IKNLKI +N Sbjct: 401 TAINEEAPLQITEGNVIKDGYNDQLDEYRDAMRNGKQWLAELEAKERQETGIKNLKIGYN 460 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GYFIE+T S+ + L++ ++ +QT++N RF T EL +LE I A ++ Sbjct: 461 RVFGYFIEITKSNLANLEEG-----KYERKQTLANAERFITPELKELERLILEAEEKSVE 515 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII-DNSTNFIVK 615 +E + F + + + L ++ I+ +D+ + A +++ Y RP + N+ N + Sbjct: 516 LEYQLFLAVREQVKTNIDRLQTLAKTISAVDVLQSFATISERYQYVRPTLRSNTKNLAIV 575 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 +GRHP+VEK L Q +I N ++ D + L+TGPNM GKST++RQ AL V+ Sbjct: 576 EGRHPVVEKVLGHQE---YIPNSIRMNPETD-----ILLITGPNMSGKSTYMRQLALTVV 627 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+G +VPA A + I D++F+R+G++D+L +G+STFMVEM+E L AT S ++ Sbjct: 628 MAQIGCFVPAESAEMPIFDQIFTRIGASDDLIAGQSTFMVEMMEANQALRHATPNSLILF 687 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGTAT DG+++A A IEY+H + + L +TH+HELT L ++LK N + + Sbjct: 688 DELGRGTATYDGMALAQAIIEYIHREVQAKTLFSTHYHELTVLDETLKGLKNIHVGAVEK 747 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--------------K 841 + ++FLHK++ G AD SYGI V K+AGLP+ ++ RA IL E Sbjct: 748 DGEVVFLHKMMEGPADKSYGIHVAKIAGLPSPLLERAATILSALEAEETTIPSSVHHEEV 807 Query: 842 LYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 H + + + E+ T+E LS ++ +K +NL EM+PL AL L+ ++ Sbjct: 808 SEVHEETEQLSLFKEVSTEE----LS-----VIDTLKKMNLLEMTPLDALNMLHQLQ 855 >gi|163857783|ref|YP_001632081.1| DNA mismatch repair protein MutS [Bordetella petrii DSM 12804] gi|163261511|emb|CAP43813.1| mismatch repair protein [Bordetella petrii] Length = 906 Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust. Identities = 300/903 (33%), Positives = 465/903 (51%), Gaps = 55/903 (6%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 ENL TPMM+QY+ +K+ L+FYRMGDFYE+F++DA A+R LG+TLTKRG G Sbjct: 33 ENLAGHTPMMQQYLRLKAEAGPLLLFYRMGDFYEMFYEDAERAARLLGLTLTKRGASNGT 92 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVPVH Y+ +L+ +G +AICEQI P AK V R +VR+VTPGTL Sbjct: 93 PIPMAGVPVHAMEQYLARLVALGESVAICEQIGDPAAAK-----GPVERRIVRIVTPGTL 147 Query: 140 TEDQLLSPTDSNYLMAV---ARIRTEWA-IAWIDISTGIFKISTSNHDRLISDIMRIDPR 195 T++ LL L AV + R A +AW+++++G F+++ ++ S++ R+ P Sbjct: 148 TDEALLPAKADRALAAVFLGGKARNPRAGLAWLNLASGEFRVTECAPAQIESELHRVAPA 207 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQV 255 E++ +E A+ FE P+ F+ + + + ++ T+ F Sbjct: 208 ELVCAES----ADPALAFE---GARTRVPDWHFESDGARAHLLAHFKTDTLAGFDVDDMP 260 Query: 256 EKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSL 314 AA A+ Y +TQ + + + +D R NLE+ +TLSG +L Sbjct: 261 AAICAAGALLRYAARTQSQTLAHVQGIAVDRPGQYVLMDPVTRRNLELTQTLSGEESPTL 320 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINP----------I 364 +D T G RL + PL D+ R +I+ + + P + Sbjct: 321 FSLLDGCRTPMGSRLLRRWLHHPLRDNAPALARQQAISALLAGRTDVAPAFGAAGLLETL 380 Query: 365 QKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKL 424 + L + PDV R SRL + P+++A +RD + + + L L L Sbjct: 381 RDALDAFPDVERISSRLALRSVRPRELASLRDALAALPALRELVAPLSASPRLAELAGHL 440 Query: 425 KKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAE 484 + P +L L ++ + RDGG + G DA LDE R+L + L+ + E Sbjct: 441 QLDP-ALADLLRRAIAQEPAVAIRDGGVIATGFDAELDELRALAADGGDFLVQLEARERE 499 Query: 485 ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLE 544 T I NL+++ N G++IEVT + +D + RQT+ N R+ T EL E Sbjct: 500 RTGIGNLRVEFNRVHGFYIEVTKGQTDKVPED------YRRRQTLKNAERYITPELKSWE 553 Query: 545 NRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP 604 +++ +A + +L E +E L + + E L + + +A +D ALA A+ ++ P Sbjct: 554 DKVLSAQDRSLAREKWLYEQLLDTLAEHVRPLSDCAGALAELDTLAALAEHARRHDWTAP 613 Query: 605 IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 + + ++ GRHP+VE+ +++ F N C L + ++ L+TGPNMGGKS Sbjct: 614 ELTDQAELDIEAGRHPVVERAIER-----FTPNGCRLDA-----TRRMLLITGPNMGGKS 663 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 T++RQ ALI ++A+ GS+VPA A IG +D++F+R+G+AD+LA GRSTFM+EM E A+IL Sbjct: 664 TYMRQVALIALLARTGSFVPAQRATIGKLDRIFTRIGAADDLAGGRSTFMMEMTEAAAIL 723 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR 784 +T S V++DEIGRGT+T DGL++AWA L NR L ATH+ ELT L Sbjct: 724 AASTPHSLVLMDEIGRGTSTYDGLALAWAIALRLVTHNRALTLFATHYFELTRLPAEQPT 783 Query: 785 FHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYH 844 NA L ++S GI+FLH+V G A SYGIQV + AG+P VI A + E+L Sbjct: 784 AANAHLAAAESAGGIVFLHEVRDGPASRSYGIQVAQRAGVPAAVIRHAS---RELERLEA 840 Query: 845 HNQKDMRLYYPEIQTKESKNNLSKNDK--------LFVEKIKCLNLDEMSPLTALKTLYA 896 +L + + +D+ +++ ++ D ++P AL LY Sbjct: 841 QGAPTPQLGLFAAAIEADAQAGAASDQSGEAAALHALRDELAQIDPDSLTPREALDALYR 900 Query: 897 VKA 899 +KA Sbjct: 901 LKA 903 >gi|323343693|ref|ZP_08083920.1| DNA mismatch repair protein MutS [Prevotella oralis ATCC 33269] gi|323095512|gb|EFZ38086.1| DNA mismatch repair protein MutS [Prevotella oralis ATCC 33269] Length = 887 Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust. Identities = 279/835 (33%), Positives = 459/835 (54%), Gaps = 42/835 (5%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKH-LGKDIP 82 TPMM+Q+ +K+ +PD+L+ +R GDFYE + +DA+ ++ LGITLTKR L Sbjct: 7 GQTPMMKQFFSMKAKHPDALLLFRCGDFYETYGEDAVRSAGVLGITLTKRNNGGLSGSTE 66 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKK--RGNKSL------VRRNVVRLV 134 M G P H + Y+ KLI+ G R+AIC+Q+E P + ++ +G K L V+R + LV Sbjct: 67 MAGFPHHALDTYLPKLIRAGMRVAICDQLEDPKKKREAIKGMKGLTEMDKMVKRGITELV 126 Query: 135 TPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDP 194 TPG D +L+ ++N+L AV ++ ++++DISTG F ++D + + P Sbjct: 127 TPGVAMTDNVLNYKENNFLAAVHFGKSSCGVSFLDISTGEFLTGEGSYDYVEKLLGNFSP 186 Query: 195 REIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 +E+++ + A+++ F T + + VF + + + ++ ++ ++ FG Sbjct: 187 KEVLYDREH--KADFERFFGTRYCIFELEDWVFTEQT-ARQKLLRHFETKSLKGFG---- 239 Query: 255 VEK-----TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL--S 307 VE A+ A + Y++ TQ I R + + + +D +LE+++ + Sbjct: 240 VEHLHNGIIASGAIMQYLEITQHTQIGHITSLSRIEEERYVRLDKFTIRSLELIQPMQEG 299 Query: 308 GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI 367 GS SLL ID + T GGR+ + PL D I RL+ ++FF + P I + Sbjct: 300 GS---SLLSVIDRTSTPMGGRMLRRWVVFPLRDEKAIERRLNVVDFFFREPQFRQLIDEK 356 Query: 368 LKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL 427 + D+ R +SR+ GR P+++ +++ +++ + I L+ D E L+ +L L Sbjct: 357 FHNIGDLERIISRVAAGRVSPREVVQLKNALQALVPIKAACLETD-NESLKRLGSQLN-L 414 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 + L ++ + D P G + DG A LDE R + K + +Q + +T Sbjct: 415 CEELSDRIAKEIQPDPPQLLSKGDVIADGYSADLDELRHISRSGKDFLLEIQEREIAQTG 474 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 I +LK+ NN GY++EV ++ + + +I +QT++ R+ T EL + E +I Sbjct: 475 IASLKVGFNNVFGYYLEVRNTYKDKVPAE------WIRKQTLAQAERYITQELKEYEEKI 528 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 A +E F L + + + V+A +D ++ A A+E Y RP++D Sbjct: 529 LGADEKIQSLEERLFGELIADMQAYIPYIQTDANVVAQLDCLLSFAKTAEENRYVRPVVD 588 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 +S +K GRHP++E L + ++ ND L D ++ ++TGPNM GKS L Sbjct: 589 DSDVLDIKQGRHPVIENQLP--VGETYVPNDIYL----DTEKQQIVIITGPNMAGKSALL 642 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ ALIV++AQMGSYVPA A +G+VDK+F+RVG++DN++ G STFMVEM E ASILN Sbjct: 643 RQTALIVLLAQMGSYVPAERAKVGLVDKVFTRVGASDNISLGESTFMVEMTEAASILNNV 702 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHET--NRCRGLLATHFHELTDLSKSLKRF 785 + +S V+ DE+GRGT+T DG+SIAWA +E+LHE R R L ATH+HEL ++ K+ R Sbjct: 703 SQRSLVLFDELGRGTSTYDGISIAWAIVEFLHEQPKARARTLFATHYHELNEMEKNFARI 762 Query: 786 HNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 N + V + + +IFL K+ G ++HS+GI V +AG+P +++ RA +LK E Sbjct: 763 KNYNVSVKEIDGKVIFLRKLEKGGSEHSFGIHVADIAGMPKSIVKRANTVLKELE 817 >gi|312863960|ref|ZP_07724197.1| DNA mismatch repair protein MutS [Streptococcus vestibularis F0396] gi|322517652|ref|ZP_08070517.1| DNA mismatch repair protein HexA [Streptococcus vestibularis ATCC 49124] gi|311100526|gb|EFQ58732.1| DNA mismatch repair protein MutS [Streptococcus vestibularis F0396] gi|322123729|gb|EFX95314.1| DNA mismatch repair protein HexA [Streptococcus vestibularis ATCC 49124] Length = 852 Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust. Identities = 275/818 (33%), Positives = 453/818 (55%), Gaps = 42/818 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKENYPDAFLLFRMGDFYELFYDDAVKAAQILEISLTSRNKNADNPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI L+++G+++AI EQ+E P +A +V+R VV+++TPGT+ + Sbjct: 67 VPYHSAQAYIDVLVEMGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVVDSS-- 119 Query: 146 SPTDSN-YLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKE 203 P ++N +L+A+ ++ + + +A++D+STG F + + S+I + RE++ Sbjct: 120 KPDNANNFLVAIDKVGSRFGLAYMDVSTGEFFATELDDFSSVCSEIQNLKTREVVVG--- 176 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 L E V V Q N+ E+ + D ++ +DT S + +E + A Sbjct: 177 ------YDLPEADEQVLVKQLNLLLS---KETEVYD--DVHLIDT--SLTDLESSVAGKL 223 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 + Y+ +TQM + + +I+ L + A +S+L++L +G + SL +D + Sbjct: 224 LQYVHRTQMRELSHLQKAQHYEIKDYLQMSYATKSSLDLLENARTGKKHGSLFWLLDETK 283 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G RL I PL + I R + I F+ N + + + LK D+ R SR+ Sbjct: 284 TAMGMRLLRTWIDRPLVNQATITERQNIIQVFLDNFFERSDLTESLKGVYDIERLASRVS 343 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 G+ PKD+ + + + + ++ L++ + L +++L LP+ LE + S + D Sbjct: 344 FGKANPKDLIQLGHTL-AQVPVIKAILESFNEDALSRLLQELDALPE-LESLIRSAIDPD 401 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P +GG +R G D +LD+ R + + IA ++ K E + I LKI +N GY+ Sbjct: 402 APATITEGGIIRAGFDETLDKYRKVMSEGTSWIADIEAKEREASGITTLKIDYNRKDGYY 461 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 VT+S+ S++ D F + T+ N RF T EL +E + A + +E + F Sbjct: 462 FHVTNSNLSLVP------DHFFRKATLKNSERFGTAELAKIEGEMLEAREKSSTLEYDIF 515 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 + + + L + ++ IA +D+ +LA++A+ +Y RP+ + ++ GRH +V Sbjct: 516 MRVREQVECYIDRLQSLAKAIATVDVLQSLAVIAETNHYVRPVFNEEHRIVIDQGRHAVV 575 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 EK + Q +I N + + L+TGPNM GKST++RQ AL V+MAQMGSY Sbjct: 576 EKVMGVQE---YIPNTITFDSQTN-----VQLITGPNMSGKSTYMRQLALSVVMAQMGSY 627 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA + I D +++R+G+AD+L SG+STFMVEM+E + + T S +I DE+GRGT Sbjct: 628 VPADSIDLPIFDAIYTRIGAADDLISGQSTFMVEMMEANQAIKRGTPNSLIIFDELGRGT 687 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFL 802 AT DG+++A + IE++H+ + + ATH+HELT LS SL N + + + + FL Sbjct: 688 ATYDGMALAQSIIEFIHDKVGAKTMFATHYHELTALSNSLPHLVNVHVATLEKDGEVTFL 747 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 HK++ G AD SYGI V K+AGLP ++ RA IL E Sbjct: 748 HKIVDGPADKSYGIHVAKIAGLPADLLERAGTILTQLE 785 >gi|21230664|ref|NP_636581.1| DNA mismatch repair protein MutS [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769341|ref|YP_244103.1| DNA mismatch repair protein MutS [Xanthomonas campestris pv. campestris str. 8004] gi|44888224|sp|Q8PBB5|MUTS_XANCP RecName: Full=DNA mismatch repair protein mutS gi|21112251|gb|AAM40505.1| DNA mismatch repair protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574673|gb|AAY50083.1| DNA mismatch repair protein [Xanthomonas campestris pv. campestris str. 8004] Length = 891 Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust. Identities = 294/887 (33%), Positives = 474/887 (53%), Gaps = 48/887 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M+Q+ KS PD L+F+RMGDFYELF+DDA A+R L ITLT+RG G IPM G Sbjct: 38 TPLMKQFFAAKSDYPDLLLFFRMGDFYELFYDDARKAARLLDITLTQRGSSGGAPIPMAG 97 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH Y+ +L+ +G +AICEQI P AK LV R VVR+VTPGT+T++ LL Sbjct: 98 VPVHAYEGYLARLVALGESVAICEQIGDPALAK-----GLVERKVVRIVTPGTVTDEALL 152 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEKEL 204 LMA++R + + +AW D++ G F ++ + D L ++I R++P E++ +++ Sbjct: 153 DERRDTLLMAISRSKQGYGLAWADLAGGRFLVNEVDSVDALEAEIARLEPAELLVPDED- 211 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAA 263 + E F +P FD ++ ++ + + FG AA A Sbjct: 212 NWPE----FLRGRVGVRRRPPWLFDADSGRRQLLAFFKLHDLSGFGIDDKPCATAAAGAL 267 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 + Y+++TQ P + E + +++A R +LE+ + G +LL +D ++T Sbjct: 268 LGYVEETQKQRLPHLTSIAMEVASEAISMNAATRRHLELDTRVDGDTRNTLLGVLDSTVT 327 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 GGRL + PL + R ++ I + +++ ++ D+ R L+R+ + Sbjct: 328 PMGGRLLRRWLHRPLRLREVLVQRHHAVGSLIDTGADTD-VREAFRALGDLERILTRVAL 386 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK------TLSS 437 P+D + +RDG+ + + D P +L+ L L + L S Sbjct: 387 RSARPRDFSTLRDGLALLPKVRTILAPLDSP--------RLQTLYAELGEHDATAHLLIS 438 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 +++ P DGG + G DA LDE R L + + + L+ + + I LK+ +N Sbjct: 439 AVAEQPPLKFSDGGVIATGYDADLDELRRLSTNADQFLIDLEQRERASSGIATLKVGYNR 498 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IE++ A ++ + RQT++N R+ T EL E+++ +A +L Sbjct: 499 VHGYYIEISKGQAE------KAPLHYSRRQTLTNAERYITEELKSFEDKVLSARERSLSR 552 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E +E L +A+ + E L + ++ +D+ A A+ ++ +P ++++ ++ G Sbjct: 553 EKLLYEGLLDALGGELEGLKRCASALSELDVLAGFAERAQALDWSQPELESAPCLHIERG 612 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE Q PF ND DL P+ + + ++TGPNMGGKST++RQNALIV++A Sbjct: 613 RHPVVEAVRDQ----PFEPNDLDLH-PDRR----MLVITGPNMGGKSTYMRQNALIVLLA 663 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GSYVPAS A IG +D++ +R+G+ D+LA G+STFMVEM ET+ IL+ AT QS V++DE Sbjct: 664 HIGSYVPASRAVIGPIDRILTRIGAGDDLARGQSTFMVEMAETSYILHHATPQSLVLMDE 723 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR-----FHNATLQV 792 IGRGT+T DGL++A A +L TNRC L ATH+ ELT L+ + N L Sbjct: 724 IGRGTSTYDGLALADAVARHLAHTNRCYTLFATHYFELTALADASHAGGGSGIANVHLDA 783 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 + E ++F+H V G A+ S+G+QV LAGLP + +A L E+ + + Sbjct: 784 VEHGERLVFMHAVKDGPANRSFGLQVAALAGLPKAAVQQARRRLAELEQ-RGGDSHAAEM 842 Query: 853 YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + + + E ++ L+ DE++P AL+ LY +KA Sbjct: 843 APAALDAPQQFGLFTAPSSAAQEALQALDPDELTPKQALEALYRLKA 889 >gi|188577456|ref|YP_001914385.1| DNA mismatch repair protein MutS [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521908|gb|ACD59853.1| DNA mismatch repair protein MutS [Xanthomonas oryzae pv. oryzae PXO99A] Length = 851 Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust. Identities = 292/885 (32%), Positives = 472/885 (53%), Gaps = 50/885 (5%) Query: 29 MRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPV 88 M+Q+ KS PD L+F+RMGDFYELF+DDA A+R L ITLT+RG G IPM GVPV Sbjct: 1 MKQFFAAKSDYPDLLLFFRMGDFYELFYDDARKAARLLDITLTQRGSSGGAPIPMAGVPV 60 Query: 89 HTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPT 148 H Y+ +L+ +G +AICEQI P AK LV R VVR+VTPGT+T++ LL Sbjct: 61 HAYEGYLARLVALGESVAICEQIGDPALAK-----GLVERKVVRIVTPGTVTDEALLDER 115 Query: 149 DSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEKELSHA 207 LMA++R + + +AW D++ G F ++ + D L ++I R++P E++ +++ Sbjct: 116 RDTLLMAISRSKQGYGLAWADLAGGRFLVNEVDSVDALEAEIARLEPAELLVPDED---- 171 Query: 208 EYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAIS 265 + G + V + P FD ++ ++ + + FG AA A + Sbjct: 172 HWPEFLR--GRIGVRRRPPWLFDADSGRRQLLAFFKLHDLSGFGIDDKPCATAAAGALLG 229 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y+ +TQ P + E + +++A R +LE+ + G +LL +D ++T Sbjct: 230 YVGETQKQRLPHLTSIAMEVASEAISMNAATRRHLELDTRVDGDTRNTLLGVLDSTVTPM 289 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 GGRL + PL + R ++ I + +++ ++ D+ R L+R+ + Sbjct: 290 GGRLLRRWLHRPLRLRDVLVQRHHAVGTLIDAGADAD-LREAFRALGDLERILTRVALRS 348 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK------TLSSML 439 P+D + +RDG+ + + D P +L+ L L + L S + Sbjct: 349 ARPRDFSTLRDGLALLPKVRTILAPLDSP--------RLQTLHAELGEHDATAHLLISAV 400 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 ++ P DGG + G DA LDE R L + + + L+ + + I LK+ +N Sbjct: 401 AETPPLKLSDGGVIASGYDAELDELRRLSTNADQFLIDLEQRERASSGIATLKVGYNRVH 460 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IE++ A ++ + RQT++N R+ T EL E+++ +A +L E Sbjct: 461 GYYIEISKGQAE------KAPLHYSRRQTLTNAERYITEELKTFEDKVLSARERSLSREK 514 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 +E L +A+ + E L + ++ +D+ A A+ ++ +P +D++ ++ GRH Sbjct: 515 LLYEGLLDALGTELEGLKRCAGALSELDVLAGFAERAQALDWSQPELDSAPCLRIERGRH 574 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE PF ND DL +D+ ++ ++TGPNMGGKST++RQNALIV++A + Sbjct: 575 PVVEAV----RDHPFEPNDLDLH--SDR---RMLVITGPNMGGKSTYMRQNALIVLLAHI 625 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPAS A IG +D++ +R+G+ D+LA G+STFMVEM ET+ IL+ AT QS V++DEIG Sbjct: 626 GSYVPASRAVIGPIDRILTRIGAGDDLARGQSTFMVEMAETSYILHHATPQSLVLMDEIG 685 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK-----SLKRFHNATLQVSD 794 RGT+T DGL++A A +L TNRC L ATH+ ELT L+ N L + Sbjct: 686 RGTSTYDGLALADAVARHLAHTNRCYTLFATHYFELTALADESHAGGASGIANVHLDAVE 745 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 E ++F+H V G A+ S+G+QV LAGLP +++A L E+ + ++ Sbjct: 746 HGERLVFMHAVKDGPANRSFGLQVAALAGLPKAAVTQARRRLVELEQRGGESHS-AQMAP 804 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + + + E ++ L+ DE++P AL+ LY +KA Sbjct: 805 TALDAPQQFGLFTAPSSAAQEALQALDPDELTPKQALEALYRLKA 849 >gi|161506972|ref|YP_001576926.1| DNA mismatch repair protein MutS [Lactobacillus helveticus DPC 4571] gi|172048182|sp|A8YTH9|MUTS_LACH4 RecName: Full=DNA mismatch repair protein mutS gi|160347961|gb|ABX26635.1| DNA mismatch repair protein [Lactobacillus helveticus DPC 4571] Length = 858 Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust. Identities = 288/880 (32%), Positives = 476/880 (54%), Gaps = 46/880 (5%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY EIK PD+ +FYR+GDFYELF DDA+ ++ L +TLT R IPM GVP Sbjct: 1 MMEQYYEIKKQYPDAFLFYRVGDFYELFEDDAVKGAQILELTLTHRSNKTKNPIPMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 + Y+ L++ G+++A+CEQ+E P +AK +V+R +++LVTPGT+ + Sbjct: 61 HMAVDTYVNTLVEKGYKVALCEQLEDPKKAK-----GMVKRGIIQLVTPGTMMNEGPNDA 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKELSH 206 DSNYL +V ++ + +A+ D+STG I+ + + ++++ + RE++++ Sbjct: 116 KDSNYLTSVVTTKSGFGLAYSDLSTGEIYSTHLKSFAAVSNELLSLRTREVVYNG---PL 172 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISY 266 E F N+ V+ P E A+ + T G+ EK+A + Y Sbjct: 173 TEQSKDFMHKANITVSAPTPI------EGEHAEISYVEQNLTNGA----EKSATRQLVGY 222 Query: 267 IKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSITGA 325 + TQ + + + ++ L + ++NLE++ + +G + SL +D + T Sbjct: 223 LLSTQKRSLAHLQIAKSYEVNQYLQMSHTVQNNLELVASAKTGKKMGSLFWVLDKTHTAM 282 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 GGRL + +A PL + IN R + + LK D+ R R+ G Sbjct: 283 GGRLLKQWLARPLLNVDIINHREKMVQALLDGYFTRENTIDALKGVYDLERLTGRIAFGN 342 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPT 445 +++ + +++ IL+ ++D + L +K+ L + + + +S+ L D P Sbjct: 343 VNARELLQLSRSLQAVPVILDALNQSD-SDVLTDFAKKIDPL-KGVAELISTTLVKDPPL 400 Query: 446 FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEV 505 +GG +RDG D LD R + K+ + ++ ++T I+NLK+ N GY+I+V Sbjct: 401 LTTEGGLIRDGVDKQLDRYRDAMNNGKKWLVQMETDERQKTGIENLKVGFNKVFGYYIQV 460 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEIL 565 ++ + S + DR+ +QT++N R+ T EL + EN I A + +E + F L Sbjct: 461 SNGNKSKV-----PLDRYTRKQTLTNAERYITPELKEHENLILEAQTRSTDLEYDLFVQL 515 Query: 566 SNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID-NSTNFIVKDGRHPIVEK 624 + + + +L +A +D+ A +A++ NYCRP +S + V +GRHP+VEK Sbjct: 516 RDEVKKYIPALQKLGNQLAALDVYCGFATVAEQNNYCRPSFHTDSQDIDVVNGRHPVVEK 575 Query: 625 TLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684 + ++ +I ND + + ++L+TGPNM GKST++RQ ALI IMAQ+GS+VP Sbjct: 576 VM---TAGSYIPNDVKMDSATN-----IFLITGPNMSGKSTYMRQMALIAIMAQVGSFVP 627 Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744 A A + I D++F+R+G+AD+L SG+STFMVEM E + L AT +S V+ DEIGRGTAT Sbjct: 628 ADSAALPIFDQIFTRIGAADDLISGQSTFMVEMSEANAALQYATKRSLVLFDEIGRGTAT 687 Query: 745 LDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHK 804 DG+++A A ++YLH+ + L ATH+HELT L ++L N + ++ N +IFLHK Sbjct: 688 YDGMALAGAIVKYLHDKVGAKALFATHYHELTSLDETLDYLKNIHVGATEENGKLIFLHK 747 Query: 805 VIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE----KLYHHNQKDMRLYYPEIQTK 860 ++PG AD SYGI V +LAGLP V+ A +LK E +L +Q+ PE + Sbjct: 748 ILPGPADQSYGIHVAQLAGLPRAVLREATKLLKRLEAQGSELAPVSQQLDLFAQPEAASD 807 Query: 861 ESKNNLSKNDKL------FVEKIKCLNLDEMSPLTALKTL 894 E +N S+N + ++ I L L + +PL ++ + Sbjct: 808 EVDDNNSENSPMTDAEQEVLDDISNLYLADKTPLQIMQMV 847 >gi|324992654|gb|EGC24575.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK405] gi|327460057|gb|EGF06396.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK1] gi|327472203|gb|EGF17640.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK408] gi|327488647|gb|EGF20447.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK1058] Length = 849 Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust. Identities = 283/820 (34%), Positives = 448/820 (54%), Gaps = 46/820 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYPDAFLLFRMGDFYELFYDDAVNAAQILEISLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI L++ G+++AI EQ+E P EAK +V+R VV+++TPGT+ + Sbjct: 67 VPYHSAQQYIDVLVESGYKVAIAEQMEDPKEAK-----GVVKREVVQVITPGTVVDS--- 118 Query: 146 SPTDS--NYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEK 202 S DS N+L+A+ + + +A++D+ TG F++++ L+ +I + RE++ Sbjct: 119 SKPDSANNFLVALDYSDSLYGLAYMDLVTGEFQVTSLEDFSLVCGEIRNLKAREVVLG-- 176 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS-FSQVEKTAAA 261 +L E V Q N+ S ++ + D V G S +E+ AA Sbjct: 177 -------YTLPEAEEQVLAGQMNLLL--SYVQTALDD------VQLLGEELSPMERQAAG 221 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT-LSGSREQSLLKTIDY 320 + Y+ +TQM + + +I+ L +D A +++L++ SG + SL +D Sbjct: 222 KLLEYVHRTQMRELSHLKKAQHYEIKDFLQMDYATKASLDLTENGRSGKKHGSLYWLMDE 281 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGR+ I PL D +I+ R + + F+ + + + + LK D+ R SR Sbjct: 282 TKTAMGGRMLRSWIQRPLIDEARISQRQNVVEVFLDHFFERSDLMESLKGVYDIERLASR 341 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + G+ PKD+ + + + + L+ L +E L +P+ L +SS +S Sbjct: 342 VSFGKTNPKDLLQLAATL-GNVPQIKAILQGIGSPHLARLIEGLDPIPE-LAGLISSAIS 399 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D P +G +R G D +LD+ R + + IA L++K + I NLKI +N G Sbjct: 400 PDAPHIITEGNIIRTGFDETLDQYRLVLREGTGWIAELEVKERANSSISNLKIDYNKKDG 459 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+ VT+S + F + T+ N RF T EL +E + A + +E E Sbjct: 460 YYFHVTNSQLT------HVPSHFFRKATLKNSERFGTEELARIEGEMLEAREKSANLEYE 513 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F + + + L +Q +A +D+ + A +A++Q+ RP+ ++ GRH Sbjct: 514 IFMRIREEAGKYIQRLQALAQTLAAVDVLQSFAAVAEQQHLVRPVFTAERRLQIEKGRHA 573 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + QS +I N L D + L+TGPNM GKST++RQ A+IVIMAQMG Sbjct: 574 VVEKVMGAQS---YIPNSILLDQKTD-----IQLITGPNMSGKSTYMRQLAIIVIMAQMG 625 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 SYVPA A + + D +F+R+G+AD+L SG+STFMVEM+E + QA+ +S ++ DE+GR Sbjct: 626 SYVPAQSASLPLFDAIFTRIGAADDLVSGQSTFMVEMMEANRAIRQASERSLILFDELGR 685 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A IE++H + L ATH+HELT L SL+ N + + + + Sbjct: 686 GTATYDGMALAQAIIEHIHHYTGAKTLFATHYHELTALEDSLEHLENVHVATLEKDGQVT 745 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 FLHK+ PG AD SYGI V K+AGLP ++ RA IL E Sbjct: 746 FLHKIEPGPADKSYGIHVAKIAGLPKKLLERADSILSHLE 785 >gi|293364382|ref|ZP_06611108.1| DNA mismatch repair protein HexA [Streptococcus oralis ATCC 35037] gi|307702653|ref|ZP_07639605.1| DNA mismatch repair protein MutS [Streptococcus oralis ATCC 35037] gi|291317228|gb|EFE57655.1| DNA mismatch repair protein HexA [Streptococcus oralis ATCC 35037] gi|307623769|gb|EFO02754.1| DNA mismatch repair protein MutS [Streptococcus oralis ATCC 35037] Length = 844 Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust. Identities = 294/883 (33%), Positives = 475/883 (53%), Gaps = 58/883 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYVDIKKQYPDAFLLFRMGDFYELFYEDAINAAQILEISLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI G+++AI EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPYHSAQQYIDVLIDQGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSSN 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEKEL 204 + +N+L+A+ R ++ +A++D+ TG F ++ L+ +I + RE++ +L Sbjct: 121 PDSQNNFLVALDRDGNQFGLAYMDLVTGDFYVTGLLDFTLVCGEIRNLKAREVVLG-YDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E + L + V + F D + + R+A VE+ AA+ + Sbjct: 180 SEEEEQILSRQMNLVLSYEKEGFEDLHLLDPRLA---------------AVEQAAASKLL 224 Query: 265 SYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 Y+ +TQM KP I Y +I+ L +D A +++L+++ SG ++ SL +D Sbjct: 225 QYVHRTQMRELNHLKPVIRY----EIKDFLQMDYATKASLDLVENARSGKKQGSLFWLLD 280 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL I PL D +I R + + F+ + + + LK D+ R S Sbjct: 281 ETKTAMGMRLLRSWIHRPLIDKERIVQRQEVVQVFLDHFFERSDLTDSLKGVYDIERLAS 340 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G+ PKD+ + + S I + + P L + +L +P+ LE +S+ + Sbjct: 341 RVSFGKTNPKDLLQLATTLSSVPRIRAILEGMEQPA-LAYLIAQLDAIPE-LESLISAAI 398 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + + P +GG +R G D +LD+ R + + IA ++ K E + I LKI +N Sbjct: 399 APEAPHVITEGGIIRTGFDETLDKYRRVLREGTSWIAEIEAKERENSGISTLKIDYNKKD 458 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+ VT+S + F + T+ N RF T EL +E + A + +E Sbjct: 459 GYYFHVTNSQLGNVPA------HFFRKATLKNSERFGTEELARIEGDMLEAREKSANLEY 512 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F + + + + L +Q IA +D+ +LA++A+ Q+ RP + ++ GRH Sbjct: 513 EIFMRIREEVSKYIQRLQALAQGIATVDVLQSLAVVAETQHLIRPEFGEDSQIDIQKGRH 572 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 +VEK + Q+ +I N ++ + L+TGPNM GKST++RQ A+ +MAQ+ Sbjct: 573 AVVEKVMGAQT---YIPNTIQMA-----EDTSIQLITGPNMSGKSTYMRQLAITAVMAQL 624 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPA AH+ I D +F+R+G+AD+L SG+STFMVEM+E + ++ AT S ++ DE+G Sbjct: 625 GSYVPAESAHLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANNAISHATKDSLILFDELG 684 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A + IEY+HE + L ATH+HELT L SL+ N + + N + Sbjct: 685 RGTATYDGMALAQSIIEYIHEHIGAKTLFATHYHELTSLESSLEHLVNVHVATLEQNGQV 744 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 FLHK+ PG AD SYGI V K+AGLP +++RA IL E + MR QT Sbjct: 745 TFLHKIEPGPADKSYGIHVAKIAGLPEELLARADKILTQLENQGTESPAPMR------QT 798 Query: 860 KESKNNLSKND----KLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +S D + ++ L++ M+P+ A+ L +K Sbjct: 799 SAVTEQMSLFDAPAEHPILAELAKLDVYNMTPMQAMNVLVELK 841 >gi|257083163|ref|ZP_05577524.1| MutS 1 protein [Enterococcus faecalis Fly1] gi|256991193|gb|EEU78495.1| MutS 1 protein [Enterococcus faecalis Fly1] Length = 858 Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust. Identities = 293/897 (32%), Positives = 485/897 (54%), Gaps = 71/897 (7%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM QY+ IK+ D+ +FYR+GDFYELF++DA+ A++ L +TLT R ++ IPMC Sbjct: 7 NTPMMEQYLSIKAQYKDAFLFYRLGDFYELFYEDAINAAQILELTLTSRNRNADDPIPMC 66 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H A YI LI+ G+++AICEQ+E P + K +V+R VV+LVTPGT+ + Sbjct: 67 GVPYHAAQGYIDTLIEQGYKVAICEQVEDP-----KTTKGMVKREVVQLVTPGTVMNSKG 121 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 L D+NYL AV ++ A++D+STG K + ++ + ++++ + +E++ Sbjct: 122 LEAKDNNYLTAVLTDGNQFGFAYVDLSTGELKTAVLADEEGVLNEASALQTKEMVLG--- 178 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + E+L + N+ F + A++ +T + +E Sbjct: 179 ------SGIPESLKENLSLRLNIIFSTQETVEENAEFSFLTN----ELINPLEIEITGKL 228 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 +SY+ TQ + I L +D ++ NLE+ +++ +G ++ +LL +D + Sbjct: 229 LSYLSVTQKRSLSHIQKAVEYQPDHFLKMDHYSKFNLELSQSIRTGQKKGTLLWLLDETK 288 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGRL + + PL +I R + + + +Q L + D+ R R+ Sbjct: 289 TAMGGRLLKQWLDRPLIQERQIKARQEMVQSLLNAYFERLDLQAALTNVYDLERLAGRVA 348 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLK------NDLPEELRGAVEKLKKLPQSLEKTLS 436 G +D+ +R + I L + +DL +L VE L L ++ Sbjct: 349 FGSVNGRDLIQLRTSLEQVPTIRQLIVGINQGEWDDLLVDL-NPVEDLVAL-------IA 400 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + ++++ P +G ++DG + LDE R K+ +A L+ K +ET IKNLKI +N Sbjct: 401 TAINEEAPLQITEGNVIKDGYNDQLDEYRDAMRNGKQWLAELEAKERQETGIKNLKIGYN 460 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GYFIE+T S+ + L++ ++ +QT++N RF T EL +LE I A ++ Sbjct: 461 RVFGYFIEITKSNLANLEEG-----KYERKQTLANAERFITPELKELERLILEAEEKSVE 515 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII-DNSTNFIVK 615 +E + F + + + L ++ I+ +D+ + AI+++ Y RP + N+ N + Sbjct: 516 LEYQLFLAVREQVKTNIDRLQTLAKTISAVDVLQSFAIISERYQYVRPTLRSNTKNLAIV 575 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 +GRHP+VEK L Q +I N ++ D + L+TGPNM GKST++RQ AL V+ Sbjct: 576 EGRHPVVEKVLGHQE---YIPNSIRMNPETD-----ILLITGPNMSGKSTYMRQLALTVV 627 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+G +VPA A + I D++F+R+G++D+L +G+STFMVEM+E L AT S ++ Sbjct: 628 MAQIGCFVPAESAEMPIFDQIFTRIGASDDLIAGQSTFMVEMMEANQALRHATPNSLILF 687 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGTAT DG+++A A IEY+H + + L +TH+HELT L ++LK N + + Sbjct: 688 DELGRGTATYDGMALAQAIIEYIHREVQAKTLFSTHYHELTVLDETLKGLKNIHVGAVEK 747 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--------------K 841 + ++FLHK++ G AD SYGI V K+AGLP+ ++ RA IL E Sbjct: 748 DGEVVFLHKMMEGPADKSYGIHVAKIAGLPSPLLERAATILSALEAEETTIPSSVHHEEV 807 Query: 842 LYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 H + + + E+ T+E LS ++ +K +NL EM+PL AL L+ ++ Sbjct: 808 SEVHEETEQLSLFKEVSTEE----LS-----VIDTLKKMNLLEMTPLDALNMLHQLQ 855 >gi|158338688|ref|YP_001519865.1| DNA mismatch repair protein MutS [Acaryochloris marina MBIC11017] gi|189030431|sp|B0CF30|MUTS_ACAM1 RecName: Full=DNA mismatch repair protein mutS gi|158308929|gb|ABW30546.1| DNA mismatch repair protein MutS [Acaryochloris marina MBIC11017] Length = 883 Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust. Identities = 283/837 (33%), Positives = 449/837 (53%), Gaps = 42/837 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 +PMMR Y+++K P +++ YRMGDFYE FF+DA ++ L + LT R G +G+ + M Sbjct: 33 SPMMRHYVDLKDEYPQTILLYRMGDFYETFFEDACTIAQALELVLTSRQSGNEVGR-VAM 91 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G+P H + Y + L++ G +AIC+Q+E P +A+ LV+R V R++TPGTL E+ Sbjct: 92 AGIPHHQLDRYSRLLVEKGFAVAICDQMEDPAQAQ-----GLVKREVTRVITPGTLLEEG 146 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEK 202 +L+ +N+L A W +A+ DISTG F + S + L +++R+ P E++F Sbjct: 147 MLNARSNNFLAAFVLAGNHWGLAYADISTGEFLTTQFSERETLAQELLRLQPSEVLFPTD 206 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVF---------FDHSISESRIADYYNITTVDTFGS-F 252 + E + PN F F + + RI + Y + +++ G Sbjct: 207 APDIQQILRPGEQSDLLPEGLPNQFCYSLRSQTSFTQAEARQRIQEVYGVRSLEGLGCEH 266 Query: 253 SQVEKTAAAAAISYIKKTQ----MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT-LS 307 + AA ++Y++ TQ + +P Y + L +D +R NLE+ +T Sbjct: 267 LPLAVRAAGGLLAYLEATQKDTHIPLQPLATY----TLSQYLVLDHQSRRNLELTQTSRD 322 Query: 308 GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI 367 G+ SLL ID + T G R + PL D I R +I + +Q Sbjct: 323 GTFRGSLLWAIDRTRTAMGSRALRRWLLQPLLDLNDIQARQAAITELLPQTGFRKELQNQ 382 Query: 368 LKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL 427 L+ D+ R R G +D+ + + + + + K + + A++ + + Sbjct: 383 LQKIYDLERLAGRAGSGTANARDLVALAESLGQLTELSHKVAKCE--AQYLQALQTVPPI 440 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 L + L + L + P +GG ++ + LD+ R ++ IA+L+ E T Sbjct: 441 LDQLAQRLRAHLVESPPISLTEGGLIKPSVNPELDQMRQQIVSDQQWIANLEKDERERTG 500 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 I LK+ N GYFI ++ + A ++ D +I +QT++N RF T EL + E RI Sbjct: 501 ISTLKVGFNKAFGYFISISRAKAD------QAPDDYIRKQTLTNEERFITPELKEREARI 554 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 A +E + F L + EQ+ + + ++ +DI + L +A Q YC P + Sbjct: 555 FTAQTEQFQLEYDLFVTLRTEVGEQASLIRTVAAAVSAVDILVGLTEVAVYQGYCCPTMS 614 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDL-SCPNDKNSGK--LWLLTGPNMGGKS 664 +S + DGRHP+VE++L F+ N +L S P+ + + L +LTGPN GKS Sbjct: 615 DSREIQILDGRHPVVEQSLP---PGFFVPNATELGSAPSAELTPHPDLVILTGPNASGKS 671 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 +LRQ LI +MAQ+GSYVPA A +GI D++F+RVG+ D+LA+G+STFMVEM ETA+IL Sbjct: 672 CYLRQVGLIQLMAQIGSYVPAQSARLGICDRIFTRVGAVDDLATGQSTFMVEMNETANIL 731 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR 784 N A+++S V+LDEIGRGTAT DGL+IAW+ E+L + R + ATH+HEL +L+ ++ Sbjct: 732 NHASSKSLVLLDEIGRGTATFDGLAIAWSVAEHLAAVIQARTIFATHYHELNELASLVEN 791 Query: 785 FHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 N + V + + IIFLH+V PG A SYGI+ G+LAGLP +VI RA ++K E+ Sbjct: 792 VANYQVLVKELPDQIIFLHQVCPGGASRSYGIEAGRLAGLPPSVIKRAKQVMKQIEQ 848 >gi|186683893|ref|YP_001867089.1| DNA mismatch repair protein MutS [Nostoc punctiforme PCC 73102] gi|254766633|sp|B2J434|MUTS_NOSP7 RecName: Full=DNA mismatch repair protein mutS gi|186466345|gb|ACC82146.1| DNA mismatch repair protein MutS [Nostoc punctiforme PCC 73102] Length = 892 Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust. Identities = 285/861 (33%), Positives = 452/861 (52%), Gaps = 60/861 (6%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M Y+E K P +++ YR+GDF+E +F DA+ ++ L + LT + + M GVP Sbjct: 33 MYLHYVETKDKYPHAVLLYRVGDFFECYFQDAVKLAQELELVLTSKQAGEQGRVAMSGVP 92 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H Y L++ G+ + IC+Q+E EA R LVRR V R++TPGTL E+ +L Sbjct: 93 HHAWERYATLLVEKGYAVVICDQVEDASEAAGR----LVRREVTRILTPGTLLEEGMLKS 148 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKELSH 206 + +NYL AV W +A+ DISTG F + S+ + L ++MR+ P E++ Sbjct: 149 SRNNYLAAVVIAANHWGLAYADISTGEFLTTQGSDLEHLTQELMRLQPSEVLVPTNAPDL 208 Query: 207 AEYKSLFETLGNVAVAQPNVF---------FDHSISESRIADYYNITTVDTFGS--FSQV 255 ET ++ P F F + R+ + + +++ G F Sbjct: 209 GSLLRPGETSPHLPECLPPSFCYSLRSQVPFSQGEARPRLLQKFKVRSLEGLGCDRFPLA 268 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSL 314 + AA + Y++ TQ N + + L +DS R NLEI +T+ G+ SL Sbjct: 269 VR-AAGGLLEYLEDTQKENPVPLQRLRTYTVTDYLIVDSQTRRNLEITQTVRDGTFHGSL 327 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L ++D + T GGR + PL D I R D+I ++N L ++++L+ D+ Sbjct: 328 LWSLDRTSTAMGGRALRRWLLQPLLDIKGIRARQDTIQELMENTPLRQDLRQLLRQIYDL 387 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R R G +D+ + D + + +L ++ P A++K+ + + L + Sbjct: 388 ERLTGRAGSGTANARDLVALADSLSRLPELSHLVTESHSP--FLKALQKVPSVLEELAQK 445 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L + L + P ++GG +R + LDE ++ + ++ IA+L++ +T I LK+ Sbjct: 446 LHAHLVESPPILIKEGGLIRPSVNPLLDERKATVEADQQWIANLEVDERAKTGISTLKVG 505 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N GY+I ++ + A + + +I +QT++N R+ T +L + E RI +A + Sbjct: 506 FNKTFGYYISISRTKADQVPAN------YIRKQTLTNEERYITPDLKEREARILSARDDL 559 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 +E E F L + +++E + N S+ +A D+ LA LA Q YCRP + + + Sbjct: 560 NQLEYEIFTALREEVAQEAEVIRNLSRAVAAADVLCGLAELAVHQGYCRPEMLSGREINI 619 Query: 615 KDGRHPIVEKTLK---------QQSSKPFIANDCDLSCPNDK------------------ 647 DGRHP+VE++L Q + +++ L+ ++ Sbjct: 620 VDGRHPVVEQSLPAGFFVPNSTQLGQESLVSSHLSLADNQEQITNTSLREAAPTTTLSTS 679 Query: 648 -------NSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRV 700 ++ L +LTGPN GKS +LRQ LI +MAQ+GS+VPA A +GI D++F+RV Sbjct: 680 DQGQMTNDNPDLIILTGPNASGKSCYLRQVGLIQLMAQIGSFVPARLAKLGICDRIFTRV 739 Query: 701 GSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHE 760 G+ D+LA+G+STFMVEM ETA+ILN AT++S V+LDEIGRGTAT DGLSIAWA EY+ Sbjct: 740 GAVDDLATGQSTFMVEMNETANILNHATSRSLVLLDEIGRGTATFDGLSIAWAVAEYIAV 799 Query: 761 TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGK 820 R R + ATH+HEL +L+ + N + V + + IIFLH+V PG AD SYGI+ G+ Sbjct: 800 DIRARTIFATHYHELNELASIVPNVANYQVTVKELPDQIIFLHQVQPGGADKSYGIEAGR 859 Query: 821 LAGLPNTVISRAYDILKTFEK 841 LAGLP VI RA ++ EK Sbjct: 860 LAGLPAVVIQRAKQVMGQIEK 880 >gi|303232158|ref|ZP_07318861.1| DNA mismatch repair protein MutS [Veillonella atypica ACS-049-V-Sch6] gi|302513264|gb|EFL55303.1| DNA mismatch repair protein MutS [Veillonella atypica ACS-049-V-Sch6] Length = 873 Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust. Identities = 302/896 (33%), Positives = 488/896 (54%), Gaps = 52/896 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TPMM QY++IKS + D L+F+R+GDFYELF +DAL+ASR L ITLT R + P Sbjct: 3 KKVTPMMEQYLDIKSRHSDELLFFRLGDFYELFNEDALIASRELNITLTGRPTGNEERTP 62 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP H A YI+ L+K G+++AICEQ+E P + K +V+R+V++++TPGT+ + Sbjct: 63 MCGVPFHAAESYIETLVKKGYKVAICEQLEDP-----KAVKGIVKRDVIQVITPGTVMTE 117 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIF---KISTSNHDRLISDIMRIDPREIIF 199 +N+L ++ W + + D+STG ++ N ++ + P EII Sbjct: 118 NGNDARSNNFLALFYLVKEAWILVFSDVSTGEVIWDRVPQDNISQIYDSLSMYRPAEIII 177 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 + + N V P F+ ++A+ + F +E+ Sbjct: 178 PKGTILPQSIVDFIHNQFNNVVLSPFTSFESVDFACKLANNH-------FQDMGLMEEDV 230 Query: 260 AAA---AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLL 315 AA + Y++ I Y + D+ + L +D+++ +LEI L G + +LL Sbjct: 231 LAALGFMLLYLQDVIKTEIAHINYVHQMDVGNRLILDTSSLRHLEITHNLRDGGVKGTLL 290 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D ++T G RL + + SPLTD + I R ++ I IQ L D Sbjct: 291 DVLDRTLTPMGARLLKQWLESPLTDISTIQRRQAAVAELISRNGERCEIQSYLDCIYDFE 350 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRG----AVEKLKKLPQSL 431 R + R++ G P+D +R+ ++ +I NL +E G ++ + Sbjct: 351 RIVGRIETGSVSPRDFTSLRESLQVLPHIKNLL------KEFSGLSLSSINNRIDNHADI 404 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 L+ +++ +DG +RDG + LDE RSL S+ + L+ K EET +K L Sbjct: 405 YDLLNRAIAEQPALTLKDGRVIRDGYNEELDELRSLATNSEVWLQKLEDKAREETGLK-L 463 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 K K+N GYF EV+ S + FI +QT N R+ T +L + E +I +A Sbjct: 464 KTKYNKVFGYFFEVSKSQIDKVPA------YFIRKQTTVNAERYITPDLKEFEIKILSAK 517 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + +E + ++ L N I + + ++ +A +D+ +LA +A E NY P I + Sbjct: 518 EKIVSLEQQLYQDLRNQIKGVIKKVQETARALAELDVLASLATVAYESNYICPNIVMNGQ 577 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 ++DGRHP++EK LK++ F+ ND L+ +++ L+TGPNM GKST++RQ A Sbjct: 578 INIRDGRHPVIEKFLKREV---FVPNDVVLNHDDEE----FMLITGPNMAGKSTYMRQVA 630 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 +++IMAQ+GS++PA A I VD++F+RVG++D++++G+STFMVEM E A IL AT++S Sbjct: 631 ILMIMAQIGSFIPAREATISPVDRVFTRVGASDDISTGQSTFMVEMKEVAYILENATSKS 690 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 +ILDEIGRGT+T DGLSIA A +E++ + + L ATH+HEL L R N T+ Sbjct: 691 LIILDEIGRGTSTFDGLSIAQAVVEHICKHIHAKTLFATHYHELIPLEDVYPRLKNYTVA 750 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM- 850 V + + I FL ++I G AD SYGI V KLAGLP V+ RA IL++ E+ + + D+ Sbjct: 751 VKEKGKDIAFLRRIIRGGADRSYGIHVAKLAGLPAQVLKRAEVILESLEE-QNTDTDDLN 809 Query: 851 -RLYYPEIQTKESKNNLSKND--KLF----VEKIKCLNLDEMSPLTALKTLYAVKA 899 R+ + K +K ++ ++D LF V+ + ++++ M+P+ AL ++ ++A Sbjct: 810 NRVITSDSVVKYTKPSIEQDDFGNLFTHSVVDSLLAIDVNTMTPIEALNAIHQLQA 865 >gi|323465930|gb|ADX69617.1| DNA mismatch repair protein mutS [Lactobacillus helveticus H10] Length = 858 Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust. Identities = 287/880 (32%), Positives = 475/880 (53%), Gaps = 46/880 (5%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY EIK PD+ +FYR+GDFYELF DDA+ ++ L +TLT R IPM GVP Sbjct: 1 MMEQYYEIKKQYPDAFLFYRVGDFYELFEDDAVKGAQILELTLTHRSNKTKNPIPMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 + Y+ L++ G+++A+CEQ+E P +AK +V+R +++LVTPGT+ + Sbjct: 61 HMAVDTYVNTLVEKGYKVALCEQLEDPKKAK-----GMVKRGIIQLVTPGTMMNEGPNDA 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKELSH 206 DSNYL +V ++ + +A+ D+STG I+ + + ++++ + RE++++ Sbjct: 116 KDSNYLTSVVTTKSGFGLAYSDLSTGEIYSTHLKSFAAVSNELLSLRTREVVYNG---PL 172 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISY 266 E F N+ V+ P E A+ + T G+ EK+A + Y Sbjct: 173 TEQNKDFMHKANITVSAPTPI------EGEHAEISYVEQNLTNGA----EKSATRQLVGY 222 Query: 267 IKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSITGA 325 + TQ + + + ++ L + ++NLE++ + +G + SL +D + T Sbjct: 223 LLSTQKRSLAHLQIAKSYEVNQYLQMSHTVQNNLELVASAKTGKKMGSLFWVLDKTHTAM 282 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 GGRL + +A PL + IN R + + + LK D+ R R+ G Sbjct: 283 GGRLLKQWLARPLLNVDIINHREEMVQALLDGYFTRENTIDALKGVYDLERLTGRIAFGN 342 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPT 445 +++ + +++ IL+ ++D + L +K+ L + + + +S+ L D P Sbjct: 343 VNARELLQLSRSLQAVPVILDALNQSD-SDVLTDFAKKIDPL-KGVAELISTTLVKDPPL 400 Query: 446 FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEV 505 +GG +RDG D LD R + K+ + ++ ++T I+NLK+ N GY+I+V Sbjct: 401 LTTEGGLIRDGVDKQLDRYRDAMNNGKKWLVQMETDERQKTGIENLKVGFNKVFGYYIQV 460 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEIL 565 ++ + S + DR+ +QT++N R+ T EL + EN I A + +E + F L Sbjct: 461 SNGNKSKV-----PLDRYTRKQTLTNAERYITPELKEHENLILEAQTRSTDLEYDLFVQL 515 Query: 566 SNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID-NSTNFIVKDGRHPIVEK 624 + + + +L +A +D+ A +A++ NYCRP +S + V +GRHP+VEK Sbjct: 516 RDEVKKYIPALQKLGNQLAALDVYCGFATVAEQNNYCRPSFHTDSQDIDVVNGRHPVVEK 575 Query: 625 TLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684 + ++ +I ND + + ++L+TGPNM GKST++RQ ALI IMAQ+GS+VP Sbjct: 576 VM---TAGSYIPNDVKMDSATN-----IFLITGPNMSGKSTYMRQMALIAIMAQVGSFVP 627 Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744 A A + I D++F+R+G+AD+L SG+STFMVEM E L AT +S V+ DEIGRGTAT Sbjct: 628 ADSAALPIFDQIFTRIGAADDLISGQSTFMVEMSEANDALQYATKRSLVLFDEIGRGTAT 687 Query: 745 LDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHK 804 DG+++A A ++YLH+ + L ATH+HELT L ++L N + ++ N ++FLHK Sbjct: 688 YDGMALAGAIVKYLHDKVGAKALFATHYHELTSLDETLDYLKNIHVGATEENGKLVFLHK 747 Query: 805 VIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE----KLYHHNQKDMRLYYPEIQTK 860 ++PG AD SYGI V +LAGLP V+ A +LK E +L Q+ PE + Sbjct: 748 ILPGPADQSYGIHVAQLAGLPCAVLREATKLLKRLEAQGSELAPVRQQLDLFAQPEAASD 807 Query: 861 ESKNNLSKNDKL------FVEKIKCLNLDEMSPLTALKTL 894 E +N S+N + ++ I L L + +PL ++ + Sbjct: 808 EVDDNDSENSPMTDAEQDVLDDISNLYLADKTPLQIMQMV 847 >gi|44888187|sp|Q7WLT5|MUTS_BORBR RecName: Full=DNA mismatch repair protein mutS Length = 876 Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust. Identities = 292/899 (32%), Positives = 464/899 (51%), Gaps = 62/899 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ +K+ L+FYRMGDFYE+F++DA A+R L +TLTKRG G IPM G Sbjct: 10 TPMMQQYLRLKAEAGPLLLFYRMGDFYEMFYEDAERAARLLNLTLTKRGNSNGTPIPMAG 69 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +PVH Y+ +L+ +G +AICEQI P AK V R +VR+VTPGTLT++ LL Sbjct: 70 IPVHAMEQYLARLVALGESVAICEQIGDPAAAK-----GPVERRIVRIVTPGTLTDEALL 124 Query: 146 SPTDSNYLMAV---ARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK 202 L AV + +AW+++++G F ++ +L S++ RI P E+I +E Sbjct: 125 PAKADRALAAVCVTGKREPRAGLAWLNLASGAFHVTECAPGQLESELHRIAPAELIQAES 184 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK----- 257 AE FE P+ F+ + +++ ++ D+ G F VE Sbjct: 185 ----AELHMAFE---GARTRVPDWHFEADGARAQLLAHFK---TDSLGGFD-VEDMPAAV 233 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA A + Y +TQ + E + +D R NLE+ +TLSG +L Sbjct: 234 CAAGALLRYAARTQSQALAHVQTIAAERPGQYVLLDPVTRRNLELTQTLSGEESPTLFSL 293 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFI----------QNPILINPIQKI 367 +D T G RL + PL ++ + R +I + L+ ++ Sbjct: 294 LDGCRTPMGSRLLRRWLHHPLRENEPVLARQHAIATMLTARQEGEQAFAAAALLETLRDA 353 Query: 368 LKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL 427 L + PD+ R +R+ + P+++A +RD + + + R +L + Sbjct: 354 LNAFPDIERIAARVALRSVRPRELASLRDALVALPALHASLAPLSGSPRARELAAQLA-M 412 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 P + + L+ ++ + RDGG + G D+ LDE R+L + L+ + E T Sbjct: 413 PPDIGELLARAVASEPAVAIRDGGVIAAGFDSELDELRALATDGGDFLVQLEARERERTG 472 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 I NL+++ N G++IEV+ + +D + RQT+ N R+ T EL E+R+ Sbjct: 473 IGNLRVEFNRVHGFYIEVSKGQTDKVPED------YRRRQTLKNAERYITPELKTWEDRV 526 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 +A + +L E +E L +A+ + L + +A +D ALA A+ ++ P + Sbjct: 527 LSAQDRSLAREKWLYEQLLDALAQYVRPLSQCASALAELDTLAALAEHARRHDWVAPELI 586 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 + ++ GRHP+VE+ +++ F N C L + ++ L+TGPNMGGKST++ Sbjct: 587 DGAEIDIEAGRHPVVERAIER-----FTPNGCRLD-----QTRRMLLITGPNMGGKSTYM 636 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ ALI ++A+ GS+VPA+ A +G +D++F+R+G+AD+LA GRSTFM+EM E A+IL + Sbjct: 637 RQVALIALLARTGSFVPATRARVGRLDRIFTRIGAADDLAGGRSTFMMEMTEAAAILAAS 696 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 T S V++DEIGRGT+T DGL++AWA L NR L ATH+ ELT L N Sbjct: 697 TPASLVLMDEIGRGTSTYDGLALAWAIAYRLLTHNRALTLFATHYFELTRLPAEQPTAAN 756 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ 847 L ++S GI+FLH+V G A SYGIQV + AG+P VI +A + E+L Sbjct: 757 VHLAAAESAGGIVFLHEVREGPASRSYGIQVAQRAGVPAAVIRQAS---RELERLEAQGA 813 Query: 848 KDMRLYY------PEIQTKESKNNLSKNDKL--FVEKIKCLNLDEMSPLTALKTLYAVK 898 +L ++Q++ L +++ ++ D ++P AL LY +K Sbjct: 814 PTPQLGLFAAALDADVQSQAMTEQAEDAAALAQLRDQLAAIDPDSLTPREALDALYRLK 872 >gi|319794775|ref|YP_004156415.1| DNA mismatch repair protein muts [Variovorax paradoxus EPS] gi|315597238|gb|ADU38304.1| DNA mismatch repair protein MutS [Variovorax paradoxus EPS] Length = 885 Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust. Identities = 313/914 (34%), Positives = 494/914 (54%), Gaps = 51/914 (5%) Query: 13 SEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTK 72 ++ I +L TPMM QY+ +K+ +PD+L+FYRMGDFYELF+ DA A+R L ITLT+ Sbjct: 6 AQPISPTSDLSGHTPMMAQYLGLKADHPDTLLFYRMGDFYELFWADAEKAARLLDITLTQ 65 Query: 73 RGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVR 132 RG+ G+ + MCGVP H + Y+ +LIK+G +AICEQ+ + +K V R V+R Sbjct: 66 RGQSAGQPVVMCGVPFHAVDTYLARLIKLGESVAICEQV-----GEVGASKGPVERKVMR 120 Query: 133 LVTPGTLTEDQLLSPTDSNYLMAV-ARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMR 191 +VTPGTLT+ +LLS + L+AV A R +AW+ ++ +++ D L + I R Sbjct: 121 VVTPGTLTDSELLSDKSESLLLAVHAGTRNFCGLAWLSVTGAELRLAECPADALEAWIAR 180 Query: 192 IDPREIIFS-------EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNIT 244 I P E+++S E+ L A + F TL +P FD + E ++++ Sbjct: 181 IAPSELLYSAEVTPAFEQRLKAARTATPF-TLS----IRPAWQFDGGLGERKLSEQMGSN 235 Query: 245 TVDTFGSFSQVEKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEIL 303 ++ + + S AAAAA+ Y + TQ + E + + R NLE++ Sbjct: 236 SLAAWNAESLTNAHAAAAALLGYAEHTQGRALSHVQRLSVERDGDLIELPPTTRRNLELV 295 Query: 304 RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL--- 360 +TL G ++ +D +TG G RL + SP D ++ RL++I +Q+ +L Sbjct: 296 QTLRGEDSPTMFSLLDTCMTGMGSRLVKRWLLSPRRDRSEAQARLEAIAA-LQSTVLGGT 354 Query: 361 ---INPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEEL 417 +++ LK++ DV R +R+ + + P+++ +R + + L L P Sbjct: 355 AAPWRTLREQLKNTSDVERIAARIALRQVRPRELLALRLALDKAEQLAPL-LPASAPLLT 413 Query: 418 RGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIAS 477 R A E+L P L S + D RDGG + G DA LDE R++ D + Sbjct: 414 RIA-ERLAP-PPGCADLLVSAIKPDPSALVRDGGVIATGHDAELDELRAISDNCDDFLLK 471 Query: 478 LQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTT 537 L++ E T I NL+++ N G++IEVT S+ S + D + RQT+ N RF T Sbjct: 472 LEISERERTGISNLRVQFNRVHGFYIEVTQSALS------KVPDNYRRRQTLKNAERFIT 525 Query: 538 LELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAK 597 EL E++ +A + AL E +E L +A+ +L + IA +D ALA + Sbjct: 526 PELKAFEDKALSAQDRALAREKWLYEQLLDALQPSVHALTQLAGGIATLDALCALAERSH 585 Query: 598 EQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTG 657 ++ P + ++ GRHP+VE L ++SS FIAND L P + + ++TG Sbjct: 586 TLHWRAPTFVSHPCIEIQQGRHPVVEARLAEKSSGGFIANDTQLG-PQQR----MQVITG 640 Query: 658 PNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEM 717 PNMGGKST++RQ A+IV++A +GS+VPA+ +G +D + +R+G+AD+LA+ +STFM+EM Sbjct: 641 PNMGGKSTYMRQVAIIVLLASIGSHVPAAACRLGPIDAIHTRIGAADDLANAQSTFMLEM 700 Query: 718 IETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTD 777 E A IL+ AT QS V++DEIGRGT+T DGL++A LH+ ++ L ATH+ ELT+ Sbjct: 701 TEAAQILHSATAQSLVLMDEIGRGTSTFDGLALAAGIAAQLHDRSKAFTLFATHYFELTE 760 Query: 778 LSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILK 837 + N + +++ I+FLH++ PG A SYGIQV +LAG+P V++ A L+ Sbjct: 761 FPATHHGAVNMHVSATEAGRDIVFLHEMQPGPASKSYGIQVARLAGMPAAVVNHARQALE 820 Query: 838 TFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAV 897 E + + + L+ P + + ++ + L+ D MSP AL LYA Sbjct: 821 ALESQHAQTRAQVDLFAPPPVAETPLASAVES------ALAALDPDTMSPREALDALYA- 873 Query: 898 KAWTLEKYSTDEDS 911 L+K +T E S Sbjct: 874 ----LQKLNTRERS 883 >gi|327463450|gb|EGF09769.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK1057] Length = 849 Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust. Identities = 294/888 (33%), Positives = 477/888 (53%), Gaps = 63/888 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYPDAFLLFRMGDFYELFYDDAVNAAQILEISLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI L++ G+++AI EQ+E P EAK +V+R VV+++TPGT+ + Sbjct: 67 VPYHSAQQYIDVLVESGYKVAIAEQMEDPKEAK-----GVVKREVVQVITPGTVVDS--- 118 Query: 146 SPTDS--NYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEK 202 S DS N+L+A+ + +A++D+ TG F++++ L+ +I + RE++ Sbjct: 119 SKPDSANNFLVALDYSDGLYGLAYMDLVTGEFQVTSLEDFVLVCGEIRNLKAREVVLG-- 176 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS-FSQVEKTAAA 261 +L E V Q N+ S ++ + D V G S +E+ AA Sbjct: 177 -------YALPEVEEQVLAGQMNLLL--SYVQTALDD------VQLLGEELSPMERQAAG 221 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 + Y+ +TQM + + +I+ L +D A +++L++ SG + SL +D Sbjct: 222 KLLEYVYRTQMRELSHLKKAQHYEIKDFLQMDYATKASLDLTENARSGKKHGSLYWLMDE 281 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGR+ I PL D +I+ R + + F+ + + + + LK D+ R SR Sbjct: 282 TKTAMGGRMLRSWIQRPLIDEARISQRQNVVEVFLNHFFERSDLTESLKGVYDIERLASR 341 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + G+ PKD+ + + + + L+ L +E L +P+ L +SS +S Sbjct: 342 VSFGKTNPKDLLQLAATL-GNVPQIKAILQGIGSPHLARLIEGLDPIPE-LAGLISSAIS 399 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D P +G +R G D +LD+ R + + IA L++K I NLKI +N G Sbjct: 400 PDAPHIITEGNIIRTGFDETLDQYRLVLREGTGWIAELEVKERANCGISNLKIDYNKKDG 459 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+ VT+S + F + T+ N RF T EL +E + A + +E E Sbjct: 460 YYFHVTNSQLA------HVPSHFFRKATLKNSERFGTEELARIEGEMLEAREKSANLEYE 513 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F + + + L +Q +A +D+ + A +A++Q+ RP+ ++ GRH Sbjct: 514 IFMRIREEAGKYIQRLQALAQTLAAVDVLQSFAAVAEQQHLVRPVFTAERRLQIEKGRHA 573 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + QS +I N L D + L+TGPNM GKST++RQ A+IVIMAQMG Sbjct: 574 VVEKVMGAQS---YIPNSILLDQETD-----IQLITGPNMSGKSTYMRQLAIIVIMAQMG 625 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 SYVPA A + + D +F+R+G+AD+L SG+STFMVEM+E + QA+ +S ++ DE+GR Sbjct: 626 SYVPAQSASLPLFDAIFTRIGAADDLVSGQSTFMVEMMEANRAIRQASERSLILFDELGR 685 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A IE++H + L ATH+HELT L SL+ N + + + + Sbjct: 686 GTATYDGMALAQAIIEHIHHYTGAKTLFATHYHELTALENSLEHLENVHVATLEKDGQVT 745 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL--YYPEIQ 858 FLHK+ PG AD SYGI V K+AGLP ++ RA +IL H +D L +P + Sbjct: 746 FLHKIEPGPADKSYGIHVAKIAGLPEKLLERADNILS------HLESQDTGLGSEFP-AE 798 Query: 859 TKESKNNLSKNDKLFVE--------KIKCLNLDEMSPLTALKTLYAVK 898 + + ++ +++ LF E +++ L++ M+PL + + +K Sbjct: 799 SSQKQSQVAEQMSLFAEGPENPVLTELRDLDIYNMTPLEVMAVVAELK 846 >gi|332365313|gb|EGJ43076.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK1059] Length = 849 Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust. Identities = 293/886 (33%), Positives = 475/886 (53%), Gaps = 59/886 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYPDAFLLFRMGDFYELFYDDAVNAAQILEISLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI L++ G+++AI EQ+E P EAK +V+R VV+++TPGT+ + Sbjct: 67 VPYHSAQQYIDVLVESGYKVAIAEQMEDPKEAK-----GVVKREVVQVITPGTVVDS--- 118 Query: 146 SPTDS--NYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEK 202 S DS N+L+A+ + +A++D+ TG F++++ L+ +I + RE++ Sbjct: 119 SKPDSANNFLVALDYSDGLYGLAYMDLVTGEFQVTSLEDFALVCGEIRNLKAREVVLG-- 176 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS-FSQVEKTAAA 261 +L E V Q N+ S ++ + D V G S +E+ AA Sbjct: 177 -------YALPEAEEQVLAGQMNLLL--SYVQTALDD------VQLLGEELSPMERQAAG 221 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 + Y+ +TQM + + +I+ L +D A +++L++ SG + SL +D Sbjct: 222 KLLEYVHRTQMRELSHLKKAQHYEIKDFLQMDYATKASLDLTENARSGKKHGSLYWLMDE 281 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGR+ I PL D +I+ R + + F+ + + + + LK D+ R SR Sbjct: 282 TKTAMGGRMLRSWIQRPLIDEARISQRQNVVEVFLDHFFERSDLTESLKGVYDIERLASR 341 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + G+ PKD+ + + + + L+ L +E L +P+ L +SS +S Sbjct: 342 VSFGKTNPKDLLQLAATL-GNVPQIKAILQGIGSPHLARLIEGLDPIPE-LAGLISSAIS 399 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D P +G +R G D +LD+ R + + IA L++K + I NLKI +N G Sbjct: 400 PDAPHIITEGNIIRTGFDETLDQYRLVLREGTGWIAELEVKERANSGISNLKIDYNKKDG 459 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+ VT+S + F + T+ N RF T EL +E + A + +E E Sbjct: 460 YYFHVTNSQLA------HVPSHFFRKATLKNSERFGTEELARIEGEMLEAREKSANLEYE 513 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F + + + L +Q +A +D+ + A +A++ + RP+ ++ GRH Sbjct: 514 IFMRIREEAGKYIQRLQALAQTLAAVDVLQSFAAVAEQLHLVRPVFTAERRLQIEKGRHA 573 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + QS +I N L D + L+TGPNM GKST++RQ A+IVIMAQMG Sbjct: 574 VVEKVMGAQS---YIPNSILLDQETD-----IQLITGPNMSGKSTYMRQLAIIVIMAQMG 625 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 SYVPA A + I D +F+R+G+AD+L SG+STFMVEM+E + QA+ +S ++ DE+GR Sbjct: 626 SYVPAQSASLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANRAIRQASERSLILFDELGR 685 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A IE++H + L ATH+HELT L +SL+ N + + + + Sbjct: 686 GTATYDGMALAQAIIEHIHHYTGAKTLFATHYHELTALEESLEHLENVHVATLEKDGQVT 745 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 FLHK+ PG AD SYGI V K+AGLP ++ RA +IL E + L P ++ Sbjct: 746 FLHKIEPGPADKSYGIHVAKIAGLPEKLLERADNILSHLES----QDTGLDLELP-AASR 800 Query: 861 ESKNNLSKNDKLFVE--------KIKCLNLDEMSPLTALKTLYAVK 898 ++ +++ LF E +++ L++ M+PL + + +K Sbjct: 801 PKQSQVAEQMSLFAEGTENPVLTELRDLDIYNMTPLEVMAAVAELK 846 >gi|290581355|ref|YP_003485747.1| DNA mismatch repair protein [Streptococcus mutans NN2025] gi|254998254|dbj|BAH88855.1| DNA mismatch repair protein [Streptococcus mutans NN2025] Length = 849 Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust. Identities = 292/878 (33%), Positives = 490/878 (55%), Gaps = 43/878 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYPDAFLLFRMGDFYELFYDDAIKAAQILEISLTSRNKNADNPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI +G+++AI EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPYHSAQQYIDVLIDLGYKVAIAEQMEDPKKAV-----GVVKREVVQVITPGTVV-DSTK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204 + +N+L+++ +++ ++++D+STG F +T ++ + S+++ + RE++ EL Sbjct: 121 PDSANNFLVSLDTDGSQFGLSYMDLSTGEFYATTLADLPAVRSEVLNLKARELVIG-FEL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E + LF N+ ++ F+ ++ Y ++ +D +E AA + Sbjct: 180 SENE-EQLFRKQMNLLLS-----FEKTV-------YDDVHLLD--DQLKAIELAAAGKLL 224 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSIT 323 Y+ TQ + +I+ L + A +S+L++L SG + SL +D + T Sbjct: 225 QYVHNTQKRELSHLQKLVHYEIKDYLQMAYATKSSLDLLENARSGKKHGSLYWLLDETKT 284 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL I PL S+ I+ R D I F+ + + + LK D+ R SR+ Sbjct: 285 AMGTRLLRTWIDRPLVSSSLISKRQDIIQTFLDHFFERSDLSDSLKGVYDIERLASRVSF 344 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 G+ PKD+ + + S + ++ L++ L + ++ LP+ LE + S + + Sbjct: 345 GKANPKDLLQLGQTL-SQVPVIKTILESFASSSLESLINQIDTLPE-LEALIRSAIDSNA 402 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P +GG +R+G D +LD+ R++ + IA ++ K +++ I LKI +N GY+ Sbjct: 403 PITITEGGMIREGFDETLDKYRTVMREGTSWIADIETKERQKSGISTLKIDYNKKDGYYF 462 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 VT+S+ S++ D F + T+ N RF T EL +E + A + +E + F Sbjct: 463 HVTNSNLSLVP------DYFFRKATLKNSERFGTAELAKIEGEMLEAREESANLEYDIFM 516 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 + + + E L N ++ +A +D+ +LA++A+ +Y RP ++ +++GRH +VE Sbjct: 517 RIRSQVESYIERLQNLAKSLATVDVLQSLAVVAENNHYVRPSFNHQQEISIENGRHAVVE 576 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 K + S+ +I N + + K S + L+TGPNM GKST++RQ AL VIMAQ+GS+V Sbjct: 577 KVM---GSQEYIPNTINF---DQKTS--IQLITGPNMSGKSTYMRQLALTVIMAQLGSFV 628 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 A A + I D +F+R+G+AD+L SG+STFMVEM+E + AT S ++ DE+GRGTA Sbjct: 629 AADSADLPIFDAIFTRIGAADDLISGQSTFMVEMMEANHAIKAATPNSLILFDELGRGTA 688 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DG+++A A IEY+H + L ATH+HELTDLS L N + + + + FLH Sbjct: 689 TYDGMALAQAIIEYIHNKVGAKTLFATHYHELTDLSTRLTSLVNVHVATLEKDGEVTFLH 748 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESK 863 K+ G AD SYGI V K+AGLP +++RA IL EK+ +++ E Q E + Sbjct: 749 KIADGPADKSYGIHVAKIAGLPKDLLNRADHILVDLEKMSAAVSVNLKNETKESQPVEEQ 808 Query: 864 NNL---SKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +L N + ++K+K L+L ++P ++ L+ +K Sbjct: 809 LSLFAIDNNYEELIKKLKQLDLTNLTPRESMNALFDLK 846 >gi|121611461|ref|YP_999268.1| DNA mismatch repair protein MutS [Verminephrobacter eiseniae EF01-2] gi|189083204|sp|A1WRJ3|MUTS_VEREI RecName: Full=DNA mismatch repair protein mutS gi|121556101|gb|ABM60250.1| DNA mismatch repair protein MutS [Verminephrobacter eiseniae EF01-2] Length = 871 Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust. Identities = 290/890 (32%), Positives = 472/890 (53%), Gaps = 41/890 (4%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 L+ TPMM QY+ +K P++L+FYRMGDFYELF+ DA A+R L ITLT+RG+ G+ + Sbjct: 5 LEHHTPMMAQYLALKGGYPETLLFYRMGDFYELFYADAEKAARLLNITLTQRGQSGGQTV 64 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 M GVP H +Y+ +LIK+G +AI EQ+ + K + R VVR++TPGTLT+ Sbjct: 65 VMAGVPFHALENYLTRLIKLGESVAIAEQV-----GEVGAAKGPLERKVVRVITPGTLTD 119 Query: 142 DQLLSPTDSNYLMAVARI-RTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 +LLS + L+++ + R +AW+ ++ G ++ HD L + + R+ P EII+S Sbjct: 120 TELLSDKAESLLLSLHQAARARCGLAWLSVTQGRVHLAECAHDELGAWLARVAPSEIIYS 179 Query: 201 -------EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTF-GSF 252 E++L F+ +P+ FD ++ E ++ ++ ++ + Sbjct: 180 AGVTQRFEQQLQALRQSGAFDCPMRT---RPDWQFDQALGERKLLEHLGAASLQAWDAQD 236 Query: 253 SQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 + AAA ++Y + TQ + + + + + + R NLE+++TL G Sbjct: 237 LGAAQAAAAGLLAYAEHTQGRALTHVHSVQAQRGDELIDLPGSTRRNLELVKTLRGDDAP 296 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINP---IQKILK 369 +LL +D +TG G RL + P + + RL + P +++ +K Sbjct: 297 TLLSLLDNCMTGMGSRLLKTWLLEPHRERHQARQRLSASTALRGAAAGAGPWATLREQIK 356 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN-DLPEELRGAVEKLKKLP 428 + DV R +R+ + + P+++ G+ + L ++ +PE + P Sbjct: 357 GASDVERITARIALRQVRPREL----PGLVKTLQKAQLLAQHGQIPEPYLMQIFDQLHPP 412 Query: 429 QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 + + L + ++++ R+GG + G DA LDE R+L+ + L+ + T I Sbjct: 413 EGCAELLQAAIAEEPAALVREGGVIATGFDAELDELRALQTDCDGFLLDLETREKARTGI 472 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 NL+++ N G++IEVTSS+ + D + RQT+ N RF T EL E++ Sbjct: 473 ANLRVQFNKVHGFYIEVTSSNLERVPAD------YRRRQTLKNAERFITPELKAFEDKAL 526 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 +A AL+ E +E + + + +L +Q +A +D+ LA + N+C P + Sbjct: 527 SANERALVREKWLYEQILDRLQPHVPALTRLAQALATLDVLCTLAERSLTLNWCAPQFVS 586 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 ++ GRHP+VE L + +S FIAN L+ + ++ L+TGPNMGGKST++R Sbjct: 587 EPCIEIEGGRHPVVEARLAETASGSFIANHTRLNA-----NTRMQLITGPNMGGKSTYMR 641 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q ALIV++A +GS+VPAS +G +D + +R+G+AD+LA+ +STFM+EM E A IL+ AT Sbjct: 642 QVALIVLLASIGSHVPASSCRLGPIDAIHTRIGAADDLANAQSTFMLEMTEAAHILHAAT 701 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA 788 S V++DEIGRGT+T DGL++A +LH+ R L ATH+ ELTDL + N Sbjct: 702 AHSLVLMDEIGRGTSTFDGLALASGIATHLHDKTRAFTLFATHYFELTDLPAKARHAINM 761 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 + ++S I+FLH++ PG A SYGIQV KLAG+P V+ A L E+ Q Sbjct: 762 HVSATESGADIVFLHEIQPGPASRSYGIQVAKLAGMPPPVLHHARRTLAALEERAGAGQL 821 Query: 849 DMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L+ + ESK+ L +N D +SP AL LY +K Sbjct: 822 QVDLFAAPKEEPESKSASPVEAAL-----AGINPDALSPREALDALYQLK 866 >gi|124268027|ref|YP_001022031.1| DNA mismatch repair protein MutS [Methylibium petroleiphilum PM1] gi|189083159|sp|A2SJQ7|MUTS_METPP RecName: Full=DNA mismatch repair protein mutS gi|124260802|gb|ABM95796.1| DNA mismatch repair protein MutS [Methylibium petroleiphilum PM1] Length = 870 Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust. Identities = 298/883 (33%), Positives = 469/883 (53%), Gaps = 42/883 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+ IK+ +PD+LV YRMGDFYELFFDDA A R L ITLT RG+ G+ + M G Sbjct: 13 TPMMQQYLRIKAEHPDTLVLYRMGDFYELFFDDARKAHRLLDITLTSRGQSAGEPVVMAG 72 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VPVH +Y+ KL+K+G +AI EQ+ AK V R VVR+VTPGT+T+ +LL Sbjct: 73 VPVHALENYLGKLVKLGESVAIAEQVGDVATAK-----GPVERKVVRVVTPGTVTDTELL 127 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 S L+AV R R + +AW+ +S+G +S L + R+ P E++ +++ Sbjct: 128 SERVDTLLLAVTRQRASYGLAWLGLSSGTLGLSECGERELAGWLARLGPAEVLVDDRD-- 185 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAAAAAI 264 A + T +P FD ++ ++ + + ++ F + AAAA + Sbjct: 186 DAALTAALSTTRTALTRRPAWQFDTALGRRKLCEQLRVASLAGFNAEDVSAAHAAAAALL 245 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 SY + TQ +G E L + A NLE+ +TL G +LL +D TG Sbjct: 246 SYAEHTQGRALAHVGSLAVERASDLLELPPATHRNLELTQTLRGEDAPTLLSLLDVCRTG 305 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 G R + P T R ++I ++ + +++ L+ DV R +R+ + Sbjct: 306 MGSRALRHWLTHPARVRTAARARHEAIGALMERGGEV--LREALRGVSDVERITARIALR 363 Query: 385 RGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL--PQSLEKTLSSMLSDD 442 + P+++ G+R+ + L L++ +P + + ++L P + L ++D+ Sbjct: 364 QVRPRELT----GLRATLLALP-ALRDGVPRDSALLADLAQQLSPPPEIADLLQRAIADE 418 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 RDGG + G DA+LDE R + + + L+ + T I NL+++ N G++ Sbjct: 419 PAVLLRDGGVIATGHDAALDELRGIAQNCEAFLLDLEARERNRTGIANLRVQFNRVHGFY 478 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IEVT + D + RQT+ N R+ T EL E++ +A AL E + Sbjct: 479 IEVTQGQVDKVPAD------YQRRQTLKNAERYITPELKAFEDKALSAQERALAREKLLY 532 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 + + +A+ Q +L ++ +A +D ALA A N+C P + ++ GRHP+V Sbjct: 533 DGVLDALQPQLAALGAVARALASLDALAALAERAAVLNWCCPEFVSQPCIEIEQGRHPVV 592 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 E L + FI NDC L D N ++ ++TGPNMGGKSTF+RQ AL+V++A MGSY Sbjct: 593 EARLAETGGGSFIPNDCRL----DANR-RMLVITGPNMGGKSTFMRQVALVVLLAAMGSY 647 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA+ +G VD + +R+G+AD+LA+ +STFM+EM E A+I++ AT S V++DEIGRGT Sbjct: 648 VPAAACRLGPVDAIHTRIGAADDLANAQSTFMLEMTEAAAIVHGATEHSLVLMDEIGRGT 707 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG---- 798 +T DGL++A A LH+ NR L ATH+ ELT + R N + ++S+ G Sbjct: 708 STFDGLALAGAIASQLHDRNRAFTLFATHYFELTAFPEKHPRALNVHVSAAESHTGHGDD 767 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--KLYHHNQKDMRLYYPE 856 I+FLH++ PG A SYG+QV +LAG+P ++ +A L+ E + +Q D+ P Sbjct: 768 IVFLHEIQPGPASRSYGVQVARLAGMPAPLLRQARATLEALEAQQAASASQIDLFAAPPP 827 Query: 857 IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 +E+ + + D ++P AL LY +K+ Sbjct: 828 SPPREATE--------LERALAGVEPDTLTPREALDALYRLKS 862 >gi|44888185|sp|Q7W880|MUTS_BORPA RecName: Full=DNA mismatch repair protein mutS Length = 883 Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust. Identities = 291/904 (32%), Positives = 464/904 (51%), Gaps = 60/904 (6%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 + L TPMM+QY+ +K+ L+FYRMGDFYE+F++DA A+R L +TLTKRG G Sbjct: 11 DALAGHTPMMQQYLRLKAEAGPLLLFYRMGDFYEMFYEDAERAARLLNLTLTKRGNSNGT 70 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+PVH Y+ +L+ +G +AICEQI P AK V R +VR+VTPGTL Sbjct: 71 PIPMAGIPVHAMEQYLARLVALGESVAICEQIGDPAAAK-----GPVERRIVRIVTPGTL 125 Query: 140 TEDQLLSPTDSNYLMAV---ARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPRE 196 T++ LL L AV + +AW+++++G F ++ +L S++ RI P E Sbjct: 126 TDEALLPAKADRALAAVCVTGKREPRAGLAWLNLASGAFHVTECAPGQLESELHRIAPAE 185 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS--- 253 +I +E AE FE P+ F+ + +++ ++ D+ G F Sbjct: 186 LIQAES----AELHMAFE---GARTRVPDWHFEADGARAQLLAHFK---TDSLGGFDVED 235 Query: 254 -QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 AA A + Y +TQ + E + +D R NLE+ +TLSG Sbjct: 236 MPAAVCAAGALLRYAARTQSQALAHVQTIAAERPGQYVLLDPVTRRNLELTQTLSGEESP 295 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFI----------QNPILIN 362 +L +D T G RL + PL ++ + R +I + L+ Sbjct: 296 TLFSLLDGCRTPMGSRLLRRWLHHPLRENEPVLARQHAIATMLTVRQEGEQAFAAAGLLE 355 Query: 363 PIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVE 422 ++ L + PD+ R +R+ + P+++A +RD + + + R Sbjct: 356 TLRDALNAFPDIERIAARVALRSVRPRELASLRDALVALPALHASLAPLSGSPRARELAA 415 Query: 423 KLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 +L +P + + L+ ++ + RDGG + G D+ LDE R+L + L+ + Sbjct: 416 QLA-MPPDIGELLARAVASEPAVAIRDGGVIAAGFDSELDELRALATDGGDFLVQLEARE 474 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T I NL+++ N G++IEV+ + +D + RQT+ N R+ T EL Sbjct: 475 RERTGIGNLRVEFNRVHGFYIEVSKGQTDKVPED------YRRRQTLKNAERYITPELKT 528 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+R+ +A + +L E +E L +A+ + L + +A +D ALA A+ ++ Sbjct: 529 WEDRVLSAQDRSLAREKWLYEQLLDALAQYVRPLSQCASALAELDTLAALAEHARRHDWV 588 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + ++ GRHP+VE+ +++ F N C L + ++ L+TGPNMGG Sbjct: 589 APELIDGAEIDIEAGRHPVVERAIER-----FTPNGCRLD-----QTRRMLLITGPNMGG 638 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI ++A+ GS+VPA+ A +G +D++F+R+G+AD+LA GRSTFM+EM E A+ Sbjct: 639 KSTYMRQVALIALLARTGSFVPATRARVGRLDRIFTRIGAADDLAGGRSTFMMEMTEAAA 698 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL +T S V++DEIGRGT+T DGL++AWA L NR L ATH+ ELT L Sbjct: 699 ILAASTPASLVLMDEIGRGTSTYDGLALAWAIAYRLLTHNRALTLFATHYFELTRLPAEQ 758 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 N L ++S GI+FLH+V G A SYGIQV + AG+P VI +A + E+L Sbjct: 759 PTAANVHLAAAESAGGIVFLHEVREGPASRSYGIQVAQRAGVPAAVIRQAS---RELERL 815 Query: 843 YHHNQKDMRLYY------PEIQTKESKNNLSKNDKL--FVEKIKCLNLDEMSPLTALKTL 894 +L ++Q++ L +++ ++ D ++P AL L Sbjct: 816 EAQGAPTPQLGLFAAALDADVQSQAMTEQAEDAAALAQLRDQLAAIDPDSLTPREALDAL 875 Query: 895 YAVK 898 Y +K Sbjct: 876 YRLK 879 >gi|255974225|ref|ZP_05424811.1| DNA mismatch repair protein mutS [Enterococcus faecalis T2] gi|256618083|ref|ZP_05474929.1| MutS 1 protein [Enterococcus faecalis ATCC 4200] gi|256958442|ref|ZP_05562613.1| MutS 1 protein [Enterococcus faecalis DS5] gi|257078246|ref|ZP_05572607.1| MutS 1 protein [Enterococcus faecalis JH1] gi|294779165|ref|ZP_06744575.1| DNA mismatch repair protein MutS [Enterococcus faecalis PC1.1] gi|307270517|ref|ZP_07551815.1| DNA mismatch repair protein MutS [Enterococcus faecalis TX4248] gi|307284811|ref|ZP_07564967.1| DNA mismatch repair protein MutS [Enterococcus faecalis TX0860] gi|312902026|ref|ZP_07761288.1| DNA mismatch repair protein MutS [Enterococcus faecalis TX0470] gi|255967097|gb|EET97719.1| DNA mismatch repair protein mutS [Enterococcus faecalis T2] gi|256597610|gb|EEU16786.1| MutS 1 protein [Enterococcus faecalis ATCC 4200] gi|256948938|gb|EEU65570.1| MutS 1 protein [Enterococcus faecalis DS5] gi|256986276|gb|EEU73578.1| MutS 1 protein [Enterococcus faecalis JH1] gi|294453798|gb|EFG22190.1| DNA mismatch repair protein MutS [Enterococcus faecalis PC1.1] gi|306503070|gb|EFM72327.1| DNA mismatch repair protein MutS [Enterococcus faecalis TX0860] gi|306513098|gb|EFM81732.1| DNA mismatch repair protein MutS [Enterococcus faecalis TX4248] gi|311290962|gb|EFQ69518.1| DNA mismatch repair protein MutS [Enterococcus faecalis TX0470] gi|315031848|gb|EFT43780.1| DNA mismatch repair protein MutS [Enterococcus faecalis TX0017] gi|315034870|gb|EFT46802.1| DNA mismatch repair protein MutS [Enterococcus faecalis TX0027] gi|315146537|gb|EFT90553.1| DNA mismatch repair protein MutS [Enterococcus faecalis TX4244] gi|315167038|gb|EFU11055.1| DNA mismatch repair protein MutS [Enterococcus faecalis TX1341] gi|329577815|gb|EGG59238.1| DNA mismatch repair protein MutS [Enterococcus faecalis TX1467] Length = 858 Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust. Identities = 293/897 (32%), Positives = 485/897 (54%), Gaps = 71/897 (7%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM QY+ IK+ D+ +FYR+GDFYELF++DA+ A++ L +TLT R ++ IPMC Sbjct: 7 NTPMMEQYLSIKAQYKDAFLFYRLGDFYELFYEDAINAAQILELTLTSRNRNADDPIPMC 66 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H A YI LI+ G+++AICEQ+E P + K +V+R VV+LVTPGT+ + Sbjct: 67 GVPYHAAQGYIDTLIEQGYKVAICEQVEDP-----KTTKGMVKREVVQLVTPGTVMNSKG 121 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 L D+NYL AV ++ A++D+STG K + ++ + ++++ + +E++ Sbjct: 122 LEAKDNNYLTAVLTDGNQFGFAYVDLSTGELKTAVLADEEGVLNEASALQTKEMVLG--- 178 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + E+L + N+ F + A++ +T + +E Sbjct: 179 ------SGIPESLKENLSLRLNIIFSTQETVEENAEFSFLTN----ELINPLEIEITGKL 228 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 +SY+ TQ + I L +D ++ NLE+ +++ +G ++ +LL +D + Sbjct: 229 LSYLSVTQKRSLSHIQKAVEYQPDHFLKMDHYSKFNLELSQSIRTGQKKGTLLWLLDETK 288 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGRL + + PL +I TR + + + +Q L + D+ R R+ Sbjct: 289 TAMGGRLLKQWLDRPLIQERQIKTRQEMVQSLLNAYFERLDLQAALTNVYDLERLAGRVA 348 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLK------NDLPEELRGAVEKLKKLPQSLEKTLS 436 G +D+ +R + I L + +DL +L VE L L ++ Sbjct: 349 FGSVNGRDLIQLRTSLEQVPTIRQLIVGINQGEWDDLLVDL-NPVEDLVAL-------IA 400 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + ++++ P +G ++DG + LDE R K+ +A L+ K +ET IKNLKI +N Sbjct: 401 TAINEEAPLQITEGNVIKDGYNDQLDEYRDAMRNGKQWLAELEAKERQETGIKNLKIGYN 460 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GYFIE+T S+ + L++ ++ +QT++N RF T EL +LE I A ++ Sbjct: 461 RVFGYFIEITKSNLANLEEG-----KYERKQTLANAERFITPELKELERLILEAEEKSVE 515 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII-DNSTNFIVK 615 +E + F + + + L ++ I+ +D+ + A +++ Y RP + N+ N + Sbjct: 516 LEYQLFLAVREQVKTNIDRLQTLAKTISAVDVLQSFATISERYQYVRPTLRSNTKNLAIV 575 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 +GRHP+VEK L Q +I N ++ D + L+TGPNM GKST++RQ AL V+ Sbjct: 576 EGRHPVVEKVLGHQE---YIPNSIRMNPETD-----ILLITGPNMSGKSTYMRQLALTVV 627 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+G +VPA A + I D++F+R+G++D+L +G+STFMVEM+E L AT S ++ Sbjct: 628 MAQIGCFVPAESAEMPIFDQIFTRIGASDDLIAGQSTFMVEMMEANQALRHATPNSLILF 687 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGTAT DG+++A A IEY+H + + L +TH+HELT L ++LK N + + Sbjct: 688 DELGRGTATYDGMALAQAIIEYIHREVQAKTLFSTHYHELTVLDETLKGLKNIHVGAVEK 747 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--------------K 841 + ++FLHK++ G AD SYGI V K+AGLP+ ++ RA IL E Sbjct: 748 DGEVVFLHKMMEGPADKSYGIHVAKIAGLPSPLLERAATILSALEAEETTIPSSVHHEEV 807 Query: 842 LYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 H + + + E+ T+E LS ++ +K +NL EM+PL AL L+ ++ Sbjct: 808 SEVHEETEQLSLFKEVSTEE----LS-----VIDTLKKMNLLEMTPLDALNMLHQLQ 855 >gi|189030769|sp|A1K764|MUTS_AZOSB RecName: Full=DNA mismatch repair protein mutS Length = 872 Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust. Identities = 297/883 (33%), Positives = 458/883 (51%), Gaps = 39/883 (4%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 + + TPMM+QY+ IK +PD+L+FYRMGDFYELFF+DA A+R L ITLT RG+ G Sbjct: 20 EIGTHTPMMQQYLRIKEQHPDTLLFYRMGDFYELFFEDAEKAARLLDITLTTRGQSAGMP 79 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 I M GVP H Y+ +L+K+G + I EQ+ P K + R V R+VTPGTLT Sbjct: 80 IRMAGVPFHAVEQYLARLVKLGESVVIAEQVGEP-----GATKGPMERAVSRIVTPGTLT 134 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 + LL L+A R +AW++++ G F++ + L + R+ P E++ Sbjct: 135 DAALLDDRRDALLLAANMHRGVLGMAWLNLANGEFRLMECPAESLQAQFERLRPAEVLIP 194 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 + L ETL + FD + + ++ + FG A Sbjct: 195 D-----GLALPLMETLAPALRRLADWQFDADTAHRLLTTHFGTRDLAGFGVEEAPVALGA 249 Query: 261 AAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 AAA+ Y K TQ + + E L +D+A R NLE+ TL G +LL +D Sbjct: 250 AAALYDYAKATQRQSLAHLTGLRLEREAEFLRLDAATRRNLELTETLRGEPSPTLLSLLD 309 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP--ILINPIQKILKSSPDVPRS 377 +T G R + PL D T R ++ + + + ++ L+ DV R Sbjct: 310 TCMTSMGSRWLRHALHHPLRDRTIPAARQQAVAALVGDGDGLHAQAVRGALRGVADVDRI 369 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 R+ + P+D++ +R+ + S + L L E + G + + L + L Sbjct: 370 TGRIALRNARPRDLSALRESL-SRLPELRQTLAQIGDEGMVGGLAAALDVQPELLQCLQR 428 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 ++D+ RDGG + G DA LDE R ++ + +L+ + E + I NLK++ N Sbjct: 429 AIADEPAAMVRDGGVIAAGYDAELDELRGIQTNCGEFLMALEARERERSGIANLKVEFNK 488 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 G++IEV+ ++A + D + RQT+ N+ R+ T EL E++ +A AL Sbjct: 489 VHGFYIEVSHANADKVPDD------YRRRQTLKNVERYITPELKAFEDKALSAQERALAR 542 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E +E L +A+ +L ++ +A +D A A A Y RP+ + ++ G Sbjct: 543 EKALYEALLDALSPYIPALQGCARALATLDGLAAFAEAALRYGYVRPVFSDQPGIEIRGG 602 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ ++ FI ND L ++ ++ ++TGPNMGGKSTF+RQ ALI ++A Sbjct: 603 RHPVVERQVED-----FIQNDARLG-----STRRMLMITGPNMGGKSTFMRQVALICLLA 652 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GS+VPA A +G +D +F+R+G++D+LASGRSTFMVEM E ++IL+ AT S V++DE Sbjct: 653 HVGSFVPAQSAVLGPLDAIFTRIGASDDLASGRSTFMVEMTEASAILHGATEHSLVLMDE 712 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGT+T DGL++A+A +L E NR L ATH+ ELT L+ N L + Sbjct: 713 IGRGTSTFDGLALAFAIARHLLEKNRSLTLFATHYFELTRLNGEYPECANVHLDAVEHGH 772 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--KLYHHNQKDMRLYYP 855 I+FLH + G A SYGI+V LAG+P VI A L+ E ++ Q D+ P Sbjct: 773 RIVFLHALEDGPASQSYGIEVAALAGIPAPVIRDAKRRLRALENREVGAGPQADLFAALP 832 Query: 856 EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + LS + + +I + D +SP AL+ LYA+K Sbjct: 833 D----DDDAPLSHPVLIALAEI---DPDSLSPREALERLYALK 868 >gi|160914743|ref|ZP_02076957.1| hypothetical protein EUBDOL_00750 [Eubacterium dolichum DSM 3991] gi|158433283|gb|EDP11572.1| hypothetical protein EUBDOL_00750 [Eubacterium dolichum DSM 3991] Length = 846 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 286/883 (32%), Positives = 489/883 (55%), Gaps = 59/883 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+ Y+E+K N D+++FYR+GDFYE+FF+DA AS L + LT R + + +PMCG Sbjct: 8 TPMMKHYLEVKERNKDAIIFYRLGDFYEMFFEDAKTASNELDLVLTGRNAGVEEKVPMCG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H AN YIQ+LI+ G+++AI EQ+E AK LV+R+V+++VTPGT+ D++ Sbjct: 68 IPHHAANGYIQRLIQKGYKVAIVEQLEDVSSAK-----GLVKRDVIKIVTPGTIM-DEVS 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRI----DPREIIFSE 201 ++ Y+ A+ + A+ +++TG + D+ + I ++ + RE++ S+ Sbjct: 122 DEKNTVYIAALHDYQFGLAVVLCEMTTGEMRAQLI--DKQVMAIQKVIMGNNVREVVVSD 179 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 K + + L ++ P V + + Y ++ S +E T Sbjct: 180 -----GFDKKMLKMLEDM----PQVTLSYQKNSEIKPAYMHL--------LSDIEDTRIH 222 Query: 262 AAI----SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLK 316 A +Y+ TQ + + + E + +D A + NLE+ +++ + + +L Sbjct: 223 QAFGILTNYLDDTQKRSMAHLNHVEFVYEHDYMQMDFATKQNLELTQSIRNNANSTTLWS 282 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D + G R + I PL D IN RLD+I F N I + +++ L D+ R Sbjct: 283 FLDKCKSSMGSRTLRKWIEYPLLDVKAINKRLDAIEFLNDNFITKDELREHLSYVYDMER 342 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 +R+ G P+DI + + I +F EE + + +L + Sbjct: 343 LSARVAYGSANPRDIVRLIKTLEHTPAIFEIFKDCSAYEEFQSIDPCI-----ALYDKIK 397 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + ++ P +DGG +G A LDE R + K I L+ K E T +K+LKI +N Sbjct: 398 DAIVEEPPLSLKDGGVFVEGYHAELDEVRRIGKSGKNWILELENKERERTGVKSLKIGYN 457 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+IEVT ++ +K++ +I +QT++N RF T EL + E+ I +A ++ Sbjct: 458 RVFGYYIEVTKANLDQIKEEF----GYIRKQTLANAERFVTQELKEKEDAIVHAQERSIR 513 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E E F L + I L + ++ +A ID AL+ ++ E Y RP + +++ Sbjct: 514 LEQELFHALLSDICVYLPKLHDVAKALATIDALYALSEISSENGYTRPHFHSEHAIFMEE 573 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 RHPI+++++KQ +++N+ D+S +D + ++TGPNMGGKST++RQ ALIV+M Sbjct: 574 ARHPILDRSMKQTR---YVSNNLDMSEEHD-----ILMITGPNMGGKSTYMRQTALIVVM 625 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+G +VPA+ + I D++F+R+G++D++ SG+STFMVEMIE + L AT S ++ D Sbjct: 626 AQIGCFVPAAKVDMPIFDQIFTRIGASDDIMSGQSTFMVEMIEANNALQNATANSLILFD 685 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DG+++A A IEY+ + L +TH+HELTD++ + N + V + + Sbjct: 686 EIGRGTSTYDGMALAQAMIEYITNHIHAKTLFSTHYHELTDMAVHNQSIRNVHVDVHEED 745 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 + I FL+++ G AD SYGI V +LA LP++V+ RA +L E+L +Q + P+ Sbjct: 746 DHITFLYRISDGKADKSYGINVARLAHLPDSVLERANQLL---EQLEQQDQGVANIQAPQ 802 Query: 857 IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 I +++N L K +E+I+ +++++M+P+ A++ LY +KA Sbjct: 803 I--IQTENPLH---KAVIERIEAVDINKMTPMEAMQCLYEIKA 840 >gi|329121177|ref|ZP_08249805.1| DNA mismatch repair protein MutS [Dialister micraerophilus DSM 19965] gi|327470259|gb|EGF15720.1| DNA mismatch repair protein MutS [Dialister micraerophilus DSM 19965] Length = 852 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 301/892 (33%), Positives = 490/892 (54%), Gaps = 71/892 (7%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD--I 81 + TP+M QY IK DSL+FYR+GDFYELF+DDA + S L +TLT GK GK+ + Sbjct: 2 AKTPLMAQYQSIKDKYEDSLLFYRLGDFYELFYDDAKVVSHELELTLT--GKSAGKEGRV 59 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H A +YI +LI+ G+++A+CEQ+E P +AK LV+R+V+R++TPGT+ Sbjct: 60 PMCGVPYHAAENYIYRLIQKGYKVAVCEQLEEPKKAK-----GLVKRDVIRVITPGTILF 114 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 + ++ +NYLM + + E + DISTG N + + D+ + Sbjct: 115 ENAIADKSNNYLMYIYEEQGEIVLILSDISTGECSWGIWNAKKELYDMFDM--------- 165 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIA--DYYN-ITTVDTFGSFSQVEKT 258 +S + T+ + + + FF S+ + +Y + + D S ++ + Sbjct: 166 --ISIYQPSETLCTISDELYEKTDYFFTSSVGGCLLVRKEYTDEVKENDVIYSDNKKVQK 223 Query: 259 AAAAAISYIK---KTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSL 314 A + Y+K K+ V I Y RED L + NLEI + + G R+ +L Sbjct: 224 AFLLLVEYLKDVMKSDSVKFHNI-YKLRED--HVLHLSEKTIRNLEITKNMRDGGRKGTL 280 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L+ +DY+ T GGRL + + PLTD +I R + I + + ++ + S D Sbjct: 281 LELLDYTSTAMGGRLLKKWLEQPLTDVNRIILRQNGIEELRTHATELQKLESLFSSIFDF 340 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIR---------SGINILNLFLKNDLPEELRGAVEKLK 425 R L+R++ PKD+ ++ ++ SG + ++ LKN + ++ K Sbjct: 341 ERILARIEANTTSPKDLLSLKATLKEIPEIKKVLSGAS--SVILKN-----INSNIKTHK 393 Query: 426 KLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE 485 + + L+K+++ + + RDG ++++G LDE RSL + S++ I L+ E+ Sbjct: 394 FVYELLDKSMNENGTGSI----RDGKYIKNGYSKELDEVRSLAENSRKWITELEKSEKEK 449 Query: 486 TKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 T IK LKI NN GY+ E+T ++ + + ++ +QT+ N R+ T EL + E Sbjct: 450 TGIK-LKIGFNNIFGYYFEITHANK------IPIPEYYVRKQTLVNAERYITPELKEFEA 502 Query: 546 RITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPI 605 ++ A +ELE ++ + I + ++ IA +D LA A ++ Y +P+ Sbjct: 503 KVLVAKEKMSELELELYKDIKKQIYPYIAEMQKTARTIAGLDCLSGLARAALKERYIKPV 562 Query: 606 IDNSTN--FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 I+ S N + DGRHP+VE LK + FI ND +L+ N + L ++TGPNM GK Sbjct: 563 IECSKNKHISINDGRHPMVEHALKNEM---FIPNDIELNHANQE----LLVITGPNMAGK 615 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 STF+RQ A++VIMAQ+GS++PA A I VD++F+RVG+ D++++G+STFMVEM E + I Sbjct: 616 STFMRQVAVLVIMAQIGSFIPAKSAVISPVDRIFTRVGATDDISTGQSTFMVEMQEVSHI 675 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLK 783 L AT S V+LDEIGRGT+T DG+SIA A +EY + L ATH+HEL+D++ + K Sbjct: 676 LKHATENSLVLLDEIGRGTSTYDGMSIAKAVVEYFDKNIHAYTLFATHYHELSDMASTSK 735 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY 843 + N T+ V + E I FL +++PG AD SYGI V +LAGLP +++ +A IL E Sbjct: 736 KIKNFTVTVKERGEEITFLRRIVPGCADRSYGIHVARLAGLPESLLKQASAILDNLES-- 793 Query: 844 HHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 N+ + +++ +N + + + ++ L++ +PL A++ L+ Sbjct: 794 QDNKSSNKKIMEKVENTSEENLFTSS---IINELSTLDVMSKTPLEAMEILF 842 >gi|262340946|ref|YP_003283801.1| DNA mismatch repair protein MutS [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272283|gb|ACY40191.1| DNA mismatch repair protein MutS [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 803 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 285/819 (34%), Positives = 456/819 (55%), Gaps = 32/819 (3%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TP+++QY IK+ PD+++ +++GDFYE+F DA+ S+ L I LTKR I Sbjct: 12 KEVTPLIQQYNNIKTKYPDTILLFQVGDFYEIFGKDAIQCSKILNIVLTKRS-----HIH 66 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 + G P H+ N Y+ KLI+ G R+AIC+Q+E P K+G K++V+R V LVTPG + Sbjct: 67 LAGFPYHSLNTYLPKLIRSGLRVAICDQLEEP----KKG-KNIVKRGVTELVTPGIAINE 121 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK 202 +L +N+L ++ ++++DISTG F ++ + ++ + +P EI+F K Sbjct: 122 NILETKSNNFLASIHLGIKNLGLSFLDISTGEFFVTEDTKNNVLQYLKLFNPSEILFQRK 181 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAA 261 E ++ F + FD+ ++ ++ ++ ++ FG + ++ ++ Sbjct: 182 E---KKFVDQFLRKKYYTFLMEDWIFDYGLAYEKLTSHFKTNSLKGFGINDLKLGIISSG 238 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 +SY+ T N I R + ++ID+ NLEI +L+ L+ +D + Sbjct: 239 VILSYLHNTHHFNIKHISNIRRIKKEEHMWIDNFTFQNLEIFHSLN-KEGVPLINIMDQT 297 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 IT GGRL I PL + I R + N IL + I+K LK D+ R +S++ Sbjct: 298 ITPMGGRLLKNWILFPLINIFHIKKRHQIVQKLYSNHILRDFIKKKLKDIHDIERMISKM 357 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKND--LPEELRGAVEKLKKLPQSLEKTLSSML 439 IG+ P++I + + S I FL D + ++ + + K + + T+ Sbjct: 358 VIGKISPREIYTLHKSLISISEIKKFFLSQDSQILTDIANSFQDCKMISDKIVNTIQENP 417 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + K G + G LDE R L K + L+ T I NLKI +NN Sbjct: 418 PHQIE--KGKGNVIIKGFSKELDEIRMLYFSQKEYLEKLRKIEQLNTGINNLKIGYNNIF 475 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GYF EV +S K + +I +QT++N R+ T EL + E +I NA L +E Sbjct: 476 GYFFEVKAS------KKYKVPSHWIQKQTLANSGRYITEELKNYELKILNAEQKILSLEK 529 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 + F L N I+E+ + L ++ IA +D+ + + LA E NY +P I++S + GRH Sbjct: 530 KIFNDLINQILEKIKHLQKNAKEIAKLDVLYSFSNLALENNYVKPEINHSLKIHIIKGRH 589 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P++E+ + S +I ND L +K+ ++ ++TGPNM GKS LRQ A+I++MA + Sbjct: 590 PVIERQFISKIS--YIPNDIIL----NKSDQQIMIITGPNMSGKSAILRQTAIIILMAHI 643 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPA YA IG++DK+FSRVG++DN++ G STFMVEM ETASILN + +SF+ILDEIG Sbjct: 644 GSFVPAKYAEIGLIDKIFSRVGASDNISLGESTFMVEMNETASILNNISKRSFLILDEIG 703 Query: 740 RGTATLDGLSIAWATIEYLHETN-RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 RGT+T DG+SIA + +E+LHE + R L ATH+HEL ++S KR N + ++ Sbjct: 704 RGTSTYDGISIAKSIVEFLHENSLRPMTLFATHYHELNEMSTIFKRIKNYHVSAKQIDDD 763 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILK 837 IIF+ K++ G ++HS+GI V K++G+P +I+RA +IL+ Sbjct: 764 IIFMRKLMVGGSEHSFGIHVAKISGMPIKIINRAEEILR 802 >gi|228476706|ref|ZP_04061375.1| DNA mismatch repair protein MutS [Streptococcus salivarius SK126] gi|228251655|gb|EEK10752.1| DNA mismatch repair protein MutS [Streptococcus salivarius SK126] Length = 852 Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust. Identities = 272/818 (33%), Positives = 454/818 (55%), Gaps = 42/818 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKENYPDAFLLFRMGDFYELFYDDAVKAAQILEISLTSRNKNADNPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI L+++G+++AI EQ+E P +A +V+R VV+++TPGT+ + Sbjct: 67 VPYHSAQSYIDVLVEMGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVVDSS-- 119 Query: 146 SPTDSN-YLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKE 203 P ++N +L+A+ + + + +A++D+STG F + + S+I + RE++ + Sbjct: 120 KPDNANNFLVAIDKAGSRFGLAYMDVSTGEFFATELDDFSSVCSEIQNLKAREVVVG-YD 178 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 L A+ + L + L + + V+ D + +DT S + +E + A Sbjct: 179 LPEADEQVLVKQLTLLLSKETEVYDD-------------VHLIDT--SLTDLESSVAGKL 223 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 + Y+ +TQM + + +I+ L + A +S+L++L +G + SL +D + Sbjct: 224 LQYVHRTQMRELSHLQKAQHYEIKDYLQMSYATKSSLDLLENARTGKKHGSLFWLLDETK 283 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G RL I PL + I R + I F+ N + + + LK D+ R SR+ Sbjct: 284 TAMGMRLLRTWIDRPLVNQAAIVERQNIIQVFLDNFFERSDLTESLKGVYDIERLASRVS 343 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 G+ PKD+ + + + + ++ L++ E L +++L LP+ LE + S + D Sbjct: 344 FGKANPKDLIQLGHTL-AQVPVIKAILESFDDEALSRLLQELDALPE-LESLIRSAIDPD 401 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P +GG +R G D +LD+ R + + IA ++ K E + I LKI +N GY+ Sbjct: 402 APATITEGGIIRAGFDETLDKYRKVMSEGTSWIADIEAKEREASGITTLKIDYNRKDGYY 461 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 VT+S+ S++ D F + T+ N RF T EL +E + A + +E + F Sbjct: 462 FHVTNSNLSLVP------DHFFRKATLKNSERFGTAELAKIEGEMLEAREKSSTLEYDIF 515 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 + + + L + ++ IA +D+ +LA+ A+ +Y RP+ ++ ++ GRH +V Sbjct: 516 MRVREQVERYIDRLQSLAKAIATVDVLQSLAVTAETNHYVRPVFNDEHRIVIDQGRHAVV 575 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 EK + Q +I N + + L+TGPNM GKST++RQ AL V+MAQMG+Y Sbjct: 576 EKVMGVQE---YIPNTITFDSQTN-----VQLITGPNMSGKSTYMRQLALSVVMAQMGAY 627 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA + + D +++R+G+AD+L SG+STFMVEM+E + +AT S +I DE+GRGT Sbjct: 628 VPADSIDLPVFDAIYTRIGAADDLISGQSTFMVEMMEANQAIKRATPNSLIIFDELGRGT 687 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFL 802 AT DG+++A + IE++H+ + + ATH+HELT LS +L N + + + + FL Sbjct: 688 ATYDGMALAQSIIEFIHDKVGAKTMFATHYHELTALSNTLTHLVNVHVATLEKDGEVTFL 747 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 HK++ G AD SYGI V K+AGLP ++ RA IL E Sbjct: 748 HKIVDGPADKSYGIHVAKIAGLPADLLERADTILTQLE 785 >gi|52785686|ref|YP_091515.1| DNA mismatch repair protein MutS [Bacillus licheniformis ATCC 14580] gi|163119447|ref|YP_079101.2| DNA mismatch repair protein MutS [Bacillus licheniformis ATCC 14580] gi|81691063|sp|Q65JE2|MUTS_BACLD RecName: Full=DNA mismatch repair protein mutS gi|52348188|gb|AAU40822.1| MutS [Bacillus licheniformis ATCC 14580] gi|145902954|gb|AAU23463.2| MutS [Bacillus licheniformis ATCC 14580] Length = 869 Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust. Identities = 290/899 (32%), Positives = 487/899 (54%), Gaps = 64/899 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY++IK+ D+ +F+R+GDFYE+FF+DA AS+ L ITLT R + IPMCG Sbjct: 5 TPMIQQYLKIKAEYQDAFLFFRLGDFYEMFFEDAKKASQELEITLTSRDGGSSERIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+ + YI++LIK G+++AICEQ+E P AK +V+R VV+L+TPGT+ + + + Sbjct: 65 VPYHSCSSYIEQLIKKGYKVAICEQVEDPKSAK-----GVVKREVVQLITPGTVMDGKGI 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEKEL 204 ++N++ +V++ + + +A+ D++TG ++ D ++S+I + REI+ S + L Sbjct: 120 HENENNFIASVSKFQHTYGLAFSDLTTGENLVTAIERLDDVVSEIYSVGAREIVVS-RNL 178 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISE--SRIADYYNITTVDTFGSFSQVEKTAAAA 262 + L E G F D E + + VDTF Sbjct: 179 DEKDVAMLKERCGATIS-----FEDEQADEVPGIVNGLGSKELVDTFMRL---------- 223 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYS 321 Y+K+TQ + + + +++ + ID ++ NLE+ T+ S +++ SLL +D + Sbjct: 224 -YVYLKRTQKRSLDHLQNVQAYELEEAMKIDLYSKRNLELTETIRSKNKKGSLLWLLDET 282 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T GGRL + I PL +I R + + I + +++ LK D+ R R+ Sbjct: 283 KTAMGGRLLKQWIDRPLIRKGQIEERQEIVETLIAHLFEREDLRERLKEVYDLERLAGRV 342 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 G +D+ +++ ++ I L D P+ + EK+ L L L + Sbjct: 343 AYGNVNARDLIQLKESLKQVPAIKQLVGSLDHPK-AKARAEKIDPCGDLL-NLLEDALYE 400 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + P ++G ++DG A LDE R K IA L+ + E T I++LK+ N GY Sbjct: 401 NPPLSLKEGNLIKDGYHAKLDEYRDASKNGKDWIARLEQQEREYTGIRSLKVGFNKVFGY 460 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IEVT ++ +L++ R+ +QT++N R+ T EL + E I A N+ +E E Sbjct: 461 YIEVTKANIHLLEEG-----RYERKQTLTNAERYITPELKEKEALILEAENNICELEYEL 515 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 F L + + E L +++++ +D+ A +++ ++Y +P + ++ DGRHP+ Sbjct: 516 FSELRSKVKEYIPRLQQLAKMMSELDVLQCFATISENRHYVKPEFSDDVVQVI-DGRHPV 574 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VEK + QS ++ N C++ ++ L+TGPNM GKST++RQ ALI I+AQ+G Sbjct: 575 VEKVMDSQS---YVPNSCEMG-----KGRQMLLITGPNMSGKSTYMRQMALISILAQIGC 626 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA A + I D++F+R+G+AD+L SG+STFMVEM+E + + AT S ++ DEIGRG Sbjct: 627 FVPAKKAVLPIFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIVHATKNSLILFDEIGRG 686 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 T+T DG+++A A IEY+HE + L +TH+HELT L + L N ++ + ++F Sbjct: 687 TSTYDGMALAQAIIEYVHEHIGAKTLFSTHYHELTSLEEKLDDLKNVHVRAEEYEGKVVF 746 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH---------------- 845 LH++ G AD SYGI V +LA LP+ +ISRA ILK E Sbjct: 747 LHQIKEGAADKSYGIHVAQLAELPDGLISRAKTILKELESGAKEAAPSTAPNMVKEAAEE 806 Query: 846 ------NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +Q ++ + E + LSK ++ + + K ++L +M+P+ + LY ++ Sbjct: 807 AAATVADQPAQLSFFETDKPIEKETKLSKKEQAVLAEFKAMDLLDMTPIQVMNELYRLQ 865 >gi|332365453|gb|EGJ43214.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK355] Length = 849 Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust. Identities = 283/820 (34%), Positives = 446/820 (54%), Gaps = 46/820 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYPDAFLLFRMGDFYELFYDDAVNAAQILEISLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI L++ G+++AI EQ+E P EAK +V+R VV+++TPGT+ + Sbjct: 67 VPYHSAQQYIDVLVESGYKVAIAEQMEDPKEAK-----GVVKREVVQVITPGTVVDS--- 118 Query: 146 SPTDS--NYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEK 202 S DS N+L+A+ + +A++D+ TG F++++ L+ +I + RE++ Sbjct: 119 SKPDSANNFLVALDYSEGLYGLAYMDLVTGEFQVTSLEDFALVCGEIRNLKAREVVLG-- 176 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS-FSQVEKTAAA 261 +L E V Q N+ S ++ + D V G S +E+ AA Sbjct: 177 -------YALPEAEEQVLAGQMNLLL--SYVQTALDD------VQLLGEELSPMERQAAG 221 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 + Y+ +TQM + +I+ L +D A +++L++ SG + SL +D Sbjct: 222 KLLEYVHRTQMRELSHLKKAHHYEIKDFLQMDYATKASLDLTENARSGKKHGSLYWLMDE 281 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGR+ I PL D +I+ R + + F+ + + + + LK D+ R SR Sbjct: 282 TKTAMGGRMLRSWIQRPLIDEARISQRQNVVEVFLDHFFERSDLTESLKGVYDIERLASR 341 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + G+ PKD+ + + + + L+ L +E L +P+ L +SS +S Sbjct: 342 VSFGKTNPKDLLQLAATL-GNVPQIKAILQGIGSPHLARLIEGLDPIPE-LAGLISSAIS 399 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D P +G +R G D +LD+ R + + IA L++K + I NLKI +N G Sbjct: 400 PDAPHIITEGNIIRTGFDETLDQYRLVLREGTGWIAELEVKERANSGISNLKIDYNKKDG 459 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+ VT+S + F + T+ N RF T EL +E + A + +E E Sbjct: 460 YYFHVTNSQLA------HVPSHFFRKATLKNSERFGTEELARIEGEMLEAREKSANLEYE 513 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F + + + L +Q +A +D+ + A +A++Q+ RP+ ++ GRH Sbjct: 514 IFMRIREEAGKYIQRLQALAQTLAAVDVLQSFAAVAEQQHLVRPVFTAERRLQIEKGRHA 573 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + QS +I N L D + L+TGPNM GKST++RQ A+IVIMAQMG Sbjct: 574 VVEKVMGAQS---YIPNSILLDQKTD-----IQLITGPNMSGKSTYMRQLAIIVIMAQMG 625 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 SYVPA A + + D +F+R+G+AD+L SG+STFMVEM+E + QA+ +S ++ DE+GR Sbjct: 626 SYVPAQSASLPLFDAIFTRIGAADDLVSGQSTFMVEMMEANRAIRQASERSLILFDELGR 685 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A IE++H + L ATH+HELT L SL+ N + + + + Sbjct: 686 GTATYDGMALAQAIIEHIHHYTGAKTLFATHYHELTALENSLEHLENVHVATLEKDGQVT 745 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 FLHK+ PG AD SYGI V K+AGLP ++ RA IL E Sbjct: 746 FLHKIEPGPADKSYGIHVAKIAGLPKKLLERADSILSHLE 785 >gi|166713039|ref|ZP_02244246.1| DNA mismatch repair protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 851 Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust. Identities = 291/885 (32%), Positives = 473/885 (53%), Gaps = 50/885 (5%) Query: 29 MRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPV 88 M+Q+ KS PD L+F+RMGDFYELF+DDA A++ L ITLT+RG G IPM GVPV Sbjct: 1 MKQFFAAKSDYPDLLLFFRMGDFYELFYDDARKAAQLLDITLTQRGSSGGAPIPMAGVPV 60 Query: 89 HTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPT 148 H Y+ +L+ +G +AICEQI P AK LV R VVR+VTPGT+T++ LL Sbjct: 61 HAYEGYLARLVALGESVAICEQIGDPALAK-----GLVERKVVRIVTPGTVTDEALLDER 115 Query: 149 DSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEKELSHA 207 LMA++R + + +AW D++ G F ++ + D L ++I R++P E++ +++ Sbjct: 116 RDTLLMAISRSKQGYGLAWADLAGGRFLVNEVDSVDALEAEIARLEPAELLVPDED---- 171 Query: 208 EYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAIS 265 + G + V + P FD ++ ++ + + FG AA A + Sbjct: 172 HWPEFLR--GRIGVRRRPPWLFDADSGRRQLLAFFKLHDLSGFGIDDKPCATAAAGALLG 229 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y+++TQ P + E + +++A R +LE+ + G +LL +D ++T Sbjct: 230 YVEETQKQRLPHLTSIAMEVASEAISMNAATRRHLELDTRVDGDTRNTLLGVLDSTVTPM 289 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 GGRL + PL + R ++ I + +++ ++ D+ R L+R+ + Sbjct: 290 GGRLLRRWLHRPLRLRDVLVQRHHAVGTLIDAGADAD-LREAFRALGDLERILTRVALRS 348 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK------TLSSML 439 P+D + +RDG+ + + D P +L+ L L + L S + Sbjct: 349 ARPRDFSTLRDGLALLPKVRTILAPLDSP--------RLQTLHAELGEHDATAHLLISAV 400 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 ++ P DGG + G DA LDE R L + + + L+ + + I LK+ +N Sbjct: 401 AETPPLKLSDGGVIASGYDAELDELRRLSTNADQFLIDLEQRERASSGIATLKVGYNRVH 460 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IE++ A ++ + RQT++N R+ T EL E+++ +A +L E Sbjct: 461 GYYIEISKGQAE------KAPLHYSRRQTLTNAERYITEELKTFEDKVLSARERSLSREK 514 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 +E L +A+ + E L + ++ +D+ A A+ ++ +P +D++ ++ GRH Sbjct: 515 LLYEGLLDALGTELEGLKRCAGALSELDVLAGFAERAQALDWSQPELDSAPCLRIERGRH 574 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE PF ND DL +D+ ++ ++TGPNMGGKST++RQNALIV++A + Sbjct: 575 PVVEAV----RDHPFEPNDLDLH--SDR---RMLVITGPNMGGKSTYMRQNALIVLLAHI 625 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPAS A IG +D++ +R+G+ D+LA G+STFMVEM ET+ IL+ AT QS V++DEIG Sbjct: 626 GSYVPASRAVIGPIDRILTRIGAGDDLARGQSTFMVEMAETSYILHHATPQSLVLMDEIG 685 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK-----SLKRFHNATLQVSD 794 RGT+T DGL++A A +L TNRC L ATH+ ELT L+ N L + Sbjct: 686 RGTSTYDGLALADAVARHLAHTNRCYTLFATHYFELTALADESHAGGASGIANVHLDAVE 745 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 E ++F+H V G A+ S+G+QV LAGLP +++A L E+ + ++ Sbjct: 746 HGERLVFMHAVKDGPANRSFGLQVAALAGLPKAAVTQARRRLVELEQRGGESHS-AQMAP 804 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + + + E ++ L+ DE++P AL+ LY +KA Sbjct: 805 TALDAPQQFGLFTAPSSAAQEALQALDPDELTPKQALEALYRLKA 849 >gi|322374236|ref|ZP_08048768.1| DNA mismatch repair protein MutS [Streptococcus sp. C150] gi|321276840|gb|EFX53913.1| DNA mismatch repair protein MutS [Streptococcus sp. C150] Length = 852 Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust. Identities = 274/819 (33%), Positives = 453/819 (55%), Gaps = 44/819 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKENYPDAFLLFRMGDFYELFYEDAVKAAQILEISLTSRNKNADNPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI L+++G+++AI EQ+E P +A +V+R VV+++TPGT+ + Sbjct: 67 VPYHSAQAYIDVLVEMGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVVDSS-- 119 Query: 146 SPTDSN-YLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKE 203 P ++N +L+A+ ++ + + +A++D+STG F + + S+I + RE++ Sbjct: 120 KPDNANNFLVAIDKVGSRFGLAYMDVSTGEFFATELDDFSSVCSEIQNLKAREVVVG--- 176 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYN-ITTVDTFGSFSQVEKTAAAA 262 L E V V Q N+ S+ D Y+ + +DT S + +E + A Sbjct: 177 ------YDLPEVDEQVLVKQLNLLL------SKETDVYDDVHLIDT--SLTDLESSVAGK 222 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYS 321 + Y+ +TQM + + +I+ L + A +S+L++L +G + SL +D + Sbjct: 223 LLQYVHRTQMRELSHLQKAQHYEIKDYLQMSYATKSSLDLLENARTGKKHGSLFWLLDET 282 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G RL I PL + I R + I F+ N + + + LK D+ R SR+ Sbjct: 283 KTAMGMRLLRTWIDRPLVNQAAILERQNIIQVFLDNFFERSDLTESLKGVYDIERLASRV 342 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 G+ PKD+ + + + + ++ L++ + L ++ L LP+ LE + S + Sbjct: 343 SFGKANPKDLIQLGHTL-AQVPVIKAILESFNDDVLSALLQDLDTLPE-LESLIRSAIDP 400 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 D P +GG +R G D +LD+ R + + IA ++ K E + I LKI +N GY Sbjct: 401 DAPATITEGGIIRAGFDETLDKYRKVMSEGTSWIADIEAKEREASGITTLKIDYNRKDGY 460 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 + VT+S+ S++ D F + T+ N RF T EL +E + A + +E + Sbjct: 461 YFHVTNSNLSLVP------DHFFRKATLKNSERFGTAELAKIEGEMLEAREKSSTLEYDI 514 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 F + + + L + ++ IA +D+ +LA+ A+ +Y RP+ ++ ++ GRH + Sbjct: 515 FMRVREQVERYIDRLQSLAKAIATVDVLQSLAVTAETNHYVRPVFNDEHRIVIDQGRHAV 574 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VEK + Q +I N + + L+TGPNM GKST++RQ AL V+MAQMGS Sbjct: 575 VEKVMGVQE---YIPNTITFDSQTN-----IQLITGPNMSGKSTYMRQLALSVVMAQMGS 626 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 YVPA + + D +++R+G+AD+L SG+STFMVEM+E + +AT S +I DE+GRG Sbjct: 627 YVPADSIDLPVFDAIYTRIGAADDLISGQSTFMVEMMEANQAIKRATPNSLIIFDELGRG 686 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 TAT DG+++A + IE++H+ + + ATH+HELT LS +L N + + + + F Sbjct: 687 TATYDGMALAQSIIEFIHDKVGAKTMFATHYHELTALSNTLTHLVNVHVATLEKDGEVTF 746 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 LHK++ G AD SYGI V K+AGLP ++ RA IL E Sbjct: 747 LHKIVDGPADKSYGIHVAKIAGLPTDLLERADTILTQLE 785 >gi|58336745|ref|YP_193330.1| DNA mismatch repair protein MutS [Lactobacillus acidophilus NCFM] gi|75507645|sp|Q5FLX5|MUTS_LACAC RecName: Full=DNA mismatch repair protein mutS gi|58254062|gb|AAV42299.1| DNA mismatch repair [Lactobacillus acidophilus NCFM] Length = 856 Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust. Identities = 270/816 (33%), Positives = 446/816 (54%), Gaps = 36/816 (4%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY EIK PD+ +FYR+GDFYELF +DA+ ++ L +TLT R IPM GVP Sbjct: 1 MMEQYYEIKKQYPDAFLFYRVGDFYELFEEDAVKGAQILELTLTHRSNKTKNPIPMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 + Y+ L++ G+++A+CEQ+E P +AK +V+R +++LVTPGT+ + Sbjct: 61 HMAVDTYVNTLVEKGYKVALCEQLEDPKKAK-----GMVKRGIIQLVTPGTMMSEGPNDA 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKELSH 206 DSNYL +V + +A+ D+STG ++ + + + ++++ + RE++++ Sbjct: 116 KDSNYLTSVVTTEKGFGVAYSDLSTGEVYATHLKSFEAVSNELLSLRTREVVYNG---PL 172 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISY 266 E F N+ V+ P S + N+T + EK A + Y Sbjct: 173 TEQNKEFMHKANITVSSPTPIEGEHAEISYVGQ--NLT--------NSAEKKATEQLVGY 222 Query: 267 IKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSITGA 325 + TQ + + + ++ L + ++NLE++ + +G + SL +D + T Sbjct: 223 LLSTQKRSLAHLQVAKSYEVNQYLQMSHTVQNNLELVASAKTGKKMGSLFWVLDKTHTAM 282 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 GGRL + +A PL + +IN R + + LK D+ R R+ G Sbjct: 283 GGRLLKQWLARPLLNVDEINHREEMVQALFDGYFTRENAIDALKGVYDLERLTGRIAFGN 342 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPT 445 +++ + + + IL+ ++D + L+ +K+ L + + + +++ + D P Sbjct: 343 VNARELLQLSRSLEAVPTILDALDQSD-SDVLKEFAQKIDPL-KGVAELITTTIVKDPPL 400 Query: 446 FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEV 505 +GG +R+G D LD R + K+ +A ++ ++T I+NLK+ +N GY+I+V Sbjct: 401 LTTEGGLIREGVDKQLDRYRDAMNNGKKWLAQMEADERQKTGIENLKVGYNKVFGYYIQV 460 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEIL 565 ++ + K+ DR+ +QT++N R+ T EL + EN I A + +E + F L Sbjct: 461 SNGN-----KNKVPLDRYTRKQTLTNAERYITPELKEHENLILEAQTRSTDLEYDLFVRL 515 Query: 566 SNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI-VKDGRHPIVEK 624 + + +L +A +D+ A +A++ NYCRP I V +GRHP+VEK Sbjct: 516 REEVKKYIPALQKLGSQLAALDVFCGFASVAEQNNYCRPSFHTDNQDIDVVNGRHPVVEK 575 Query: 625 TLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684 + ++ +I N ++ S ++L+TGPNM GKST++RQ ALI IMAQ+GS+VP Sbjct: 576 VM---TAGSYIPNSVEMDS-----STNIYLITGPNMSGKSTYMRQMALIAIMAQVGSFVP 627 Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744 A A + I D++F+R+G+AD+L SG+STFMVEM E L AT +S V+ DEIGRGTAT Sbjct: 628 ADSADLPIFDQIFTRIGAADDLISGQSTFMVEMSEANDALQYATKRSLVLFDEIGRGTAT 687 Query: 745 LDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHK 804 DG+++A A ++YLH+ + ATH+HELTDL ++L N + ++ N +IFLHK Sbjct: 688 YDGMALAGAIVKYLHDKVGAKAFFATHYHELTDLDETLDHLKNIHVGATEENGKLIFLHK 747 Query: 805 VIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 ++PG AD SYGI V +LAGLP +V+ A +LK E Sbjct: 748 ILPGPADQSYGIHVAQLAGLPKSVLREATKLLKRLE 783 >gi|33596868|ref|NP_884511.1| DNA mismatch repair protein [Bordetella parapertussis 12822] gi|33573569|emb|CAE37563.1| mismatch repair protein [Bordetella parapertussis] Length = 913 Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust. Identities = 291/904 (32%), Positives = 464/904 (51%), Gaps = 60/904 (6%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 + L TPMM+QY+ +K+ L+FYRMGDFYE+F++DA A+R L +TLTKRG G Sbjct: 41 DALAGHTPMMQQYLRLKAEAGPLLLFYRMGDFYEMFYEDAERAARLLNLTLTKRGNSNGT 100 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+PVH Y+ +L+ +G +AICEQI P AK V R +VR+VTPGTL Sbjct: 101 PIPMAGIPVHAMEQYLARLVALGESVAICEQIGDPAAAK-----GPVERRIVRIVTPGTL 155 Query: 140 TEDQLLSPTDSNYLMAV---ARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPRE 196 T++ LL L AV + +AW+++++G F ++ +L S++ RI P E Sbjct: 156 TDEALLPAKADRALAAVCVTGKREPRAGLAWLNLASGAFHVTECAPGQLESELHRIAPAE 215 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS--- 253 +I +E AE FE P+ F+ + +++ ++ D+ G F Sbjct: 216 LIQAES----AELHMAFE---GARTRVPDWHFEADGARAQLLAHFK---TDSLGGFDVED 265 Query: 254 -QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 AA A + Y +TQ + E + +D R NLE+ +TLSG Sbjct: 266 MPAAVCAAGALLRYAARTQSQALAHVQTIAAERPGQYVLLDPVTRRNLELTQTLSGEESP 325 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFI----------QNPILIN 362 +L +D T G RL + PL ++ + R +I + L+ Sbjct: 326 TLFSLLDGCRTPMGSRLLRRWLHHPLRENEPVLARQHAIATMLTVRQEGEQAFAAAGLLE 385 Query: 363 PIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVE 422 ++ L + PD+ R +R+ + P+++A +RD + + + R Sbjct: 386 TLRDALNAFPDIERIAARVALRSVRPRELASLRDALVALPALHASLAPLSGSPRARELAA 445 Query: 423 KLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 +L +P + + L+ ++ + RDGG + G D+ LDE R+L + L+ + Sbjct: 446 QLA-MPPDIGELLARAVASEPAVAIRDGGVIAAGFDSELDELRALATDGGDFLVQLEARE 504 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T I NL+++ N G++IEV+ + +D + RQT+ N R+ T EL Sbjct: 505 RERTGIGNLRVEFNRVHGFYIEVSKGQTDKVPED------YRRRQTLKNAERYITPELKT 558 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+R+ +A + +L E +E L +A+ + L + +A +D ALA A+ ++ Sbjct: 559 WEDRVLSAQDRSLAREKWLYEQLLDALAQYVRPLSQCASALAELDTLAALAEHARRHDWV 618 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + ++ GRHP+VE+ +++ F N C L + ++ L+TGPNMGG Sbjct: 619 APELIDGAEIDIEAGRHPVVERAIER-----FTPNGCRLD-----QTRRMLLITGPNMGG 668 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALI ++A+ GS+VPA+ A +G +D++F+R+G+AD+LA GRSTFM+EM E A+ Sbjct: 669 KSTYMRQVALIALLARTGSFVPATRARVGRLDRIFTRIGAADDLAGGRSTFMMEMTEAAA 728 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL +T S V++DEIGRGT+T DGL++AWA L NR L ATH+ ELT L Sbjct: 729 ILAASTPASLVLMDEIGRGTSTYDGLALAWAIAYRLLTHNRALTLFATHYFELTRLPAEQ 788 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 N L ++S GI+FLH+V G A SYGIQV + AG+P VI +A + E+L Sbjct: 789 PTAANVHLAAAESAGGIVFLHEVREGPASRSYGIQVAQRAGVPAAVIRQAS---RELERL 845 Query: 843 YHHNQKDMRLYY------PEIQTKESKNNLSKNDKL--FVEKIKCLNLDEMSPLTALKTL 894 +L ++Q++ L +++ ++ D ++P AL L Sbjct: 846 EAQGAPTPQLGLFAAALDADVQSQAMTEQAEDAAALAQLRDQLAAIDPDSLTPREALDAL 905 Query: 895 YAVK 898 Y +K Sbjct: 906 YRLK 909 >gi|260887307|ref|ZP_05898570.1| DNA mismatch repair protein MutS [Selenomonas sputigena ATCC 35185] gi|330838939|ref|YP_004413519.1| DNA mismatch repair protein MutS [Selenomonas sputigena ATCC 35185] gi|260862943|gb|EEX77443.1| DNA mismatch repair protein MutS [Selenomonas sputigena ATCC 35185] gi|329746703|gb|AEC00060.1| DNA mismatch repair protein MutS [Selenomonas sputigena ATCC 35185] Length = 861 Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust. Identities = 305/889 (34%), Positives = 469/889 (52%), Gaps = 57/889 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+E K+ +PD ++F+R+GDFYE+FFDDA L SR LG+TLT R + K PMCG Sbjct: 4 TPMMQQYLETKNRHPDEILFFRLGDFYEMFFDDAKLVSRELGLTLTSRSGNKEK-TPMCG 62 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A YI KLI G+++AI EQI P K L +R V+++VTPGT+ + L Sbjct: 63 VPYHAAESYIAKLINKGYKVAIAEQIGDP------KAKGLTKREVIKIVTPGTVLAESSL 116 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG--IFKISTSNHDR--LISDIMRIDPREIIFSE 201 +NY+ + A+A D+STG + + R L ++ R+ E+I Sbjct: 117 HDAQNNYIALIFEEEEALALAAADVSTGECFYGVYEGKAARQMLFDELYRLMMPELIL-- 174 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSIS-----ESRIADYYNITTVDTFGSFSQVE 256 + ++ + +A+ P H + + R+ +++ ++ F+Q Sbjct: 175 --MGEIAFRDELDEF--LALRMPKCALTHRKAVFPDWKLRLTQHFDKDSLPR-REFAQ-- 227 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLL 315 A A + Y+ +T + I D + L +D+ NLEI+R L G ++ +LL Sbjct: 228 -KAVAVLLDYLHETVKTDLSHINRLIYLDASANLVLDTYTLRNLEIIRNLRDGGKKDTLL 286 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D++ T G RL + + PL KI RLD + F + L +Q + D Sbjct: 287 DVLDFTKTAMGSRLLRKWLEYPLLSREKIERRLDGVAEFAADFSLREDVQAHCREIFDFE 346 Query: 376 RSLSRLKIGRGEPKDIAVIRD--GIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 R L+R+++G +D+ ++ G + + L E G V +++ LE+ Sbjct: 347 RLLTRIEVGTANARDLVALKLSLGALPPLKARLAAVSAPLLREAEGGVALFEEIVSLLER 406 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + L R+GG +++ DA LDE R + SK+++ ++ + E T IK LKI Sbjct: 407 AIVEEPGISL----REGGIIKENYDAELDEYRHISHDSKKMLQQMEEREKELTGIKTLKI 462 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GY+IEV S A ++ +R+I +QT++N R+ T EL + E +I A Sbjct: 463 GYNKVFGYYIEVRRSGADLVP------ERYIRKQTLANAERYITEELKEFETKILGAQEK 516 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + IE F + I + +Q IA++D+ +LA A NY RP + + Sbjct: 517 IVQIEYRLFTEIRETIKADLSRIQQTAQHIAVLDVLASLAEAANNYNYVRPKLAANGEIS 576 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 ++DGRHP+VE+ L ++ F+ ND +L + ++ L+TGPNM GKST++RQ AL+ Sbjct: 577 IRDGRHPLVERIL---TNDLFVPNDTEL----NHQECEVMLITGPNMAGKSTYMRQVALL 629 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MAQ GS+VPA VD++F+R+G++D+L SG+STFMVEM E A IL AT S V Sbjct: 630 TLMAQSGSFVPAKEMTFSPVDRIFTRIGASDDLVSGQSTFMVEMNEVAQILKYATKDSLV 689 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ILDEIGRGT+T DG+SIA A +EY+ + L ATH+HELTD+ +R N + V Sbjct: 690 ILDEIGRGTSTFDGMSIARAVVEYMRSKIHAKTLFATHYHELTDMED--ERIKNYCIAVK 747 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 + + FL ++I G AD SYGI V +LAGLP V RA +IL E+ Sbjct: 748 ERGAKVAFLRRIIRGSADKSYGIHVARLAGLPKNVTQRAQEILDEIEQCAGIAVSSKA-- 805 Query: 854 YPEIQTKESKNNLSKNDKLFVEKIK--CLNLD--EMSPLTALKTLYAVK 898 PE + + L + LF ++ L+LD M+PL AL LY ++ Sbjct: 806 -PEQAAPQEEAALMGS--LFAPSLRDTILSLDVMAMTPLEALNELYRLQ 851 >gi|212550741|ref|YP_002309058.1| DNA mismatch repair protein MutS [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548979|dbj|BAG83647.1| DNA mismatch repair protein MutS [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 883 Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust. Identities = 291/829 (35%), Positives = 459/829 (55%), Gaps = 34/829 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M QY EIKS PD+++ +R+GDFYE F DDA+ AS L I LT R + + + G Sbjct: 10 TPLMEQYFEIKSKYPDTILLFRVGDFYETFADDAIAASEILDIVLTHRANGCCQTVKLAG 69 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + Y+ KL++ G RIAIC+Q+E P + K +V+R V L+TPG D +L Sbjct: 70 FPYHALDTYLPKLVRAGKRIAICDQLEDP-----KTTKRIVKRGVTELITPGVSINDSIL 124 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIF---KISTSNHDRLISDIMRIDPREIIFSEK 202 S ++N+L AV + A++DISTG F + S+S D+L + P+E++ E+ Sbjct: 125 SHKENNFLAAVHFDKNICGTAFLDISTGEFLTTEGSSSYIDKLFN---HFSPKEVLL-ER 180 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 K+ E L + + F +E R+ + + FG AA Sbjct: 181 NKREIFKKNFGEKL--LTFEMEDWVFTEDTAECRLHKQFETKNLKGFGIQHLPNGIIAAG 238 Query: 263 AI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 AI Y+ TQ I R + + + +D +LE+L ++ QSLLK +D + Sbjct: 239 AILHYLDLTQHAYTNHIFTLTRIEEEQYVRLDKFTIHSLELLNVMNEGGGQSLLKVLDKT 298 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +T G R+ + I PL +I RL + +F+++ + + ++K L D+ R +S++ Sbjct: 299 VTSVGARMLRKWIVFPLKKIEQIEGRLSIVEYFLKSSTVKDLLEKQLNQISDLERLISKV 358 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 +G+ P ++A I+ + + I I + L + L+ E+L L + + + LS Sbjct: 359 SVGKANPYEVAQIKIALDAIIPIKEICLDCSIGS-LKQIGEQLN-LCSEIREKIQRELSA 416 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 D P G + +G + LDE R + K + +Q + +T I +LK+ +NN GY Sbjct: 417 DPPVLLSKGNVIAEGINGELDELRQIVYSGKDHLLKIQQREIFQTGIPSLKVGYNNVFGY 476 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IEV S KK + S +I +QT+ + R+ T EL E +I A + + +E + Sbjct: 477 YIEVRHS----YKKKIPSN--WIRKQTLVHAERYITEELKIYEEKILGAEDRIIEMETDI 530 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 F L + + + + +++IA ID ++ A +A++ +Y RP ID S +K GRHP+ Sbjct: 531 FNSLVSKLSKYIIPIQINARLIAEIDCLLSFAKIAEQNHYVRPQIDASRIIDIKKGRHPV 590 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 +E L Q + ++ ND L NDK ++ ++TGPNM GKS LRQ ALI +MAQ+GS Sbjct: 591 IETQL--QPDELYVPNDIYLD--NDKQ--QIIIITGPNMAGKSALLRQTALITLMAQIGS 644 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA A IG VDK+F+RVG++DN++ G STFMVEM E A ILN +++S +I DE+GRG Sbjct: 645 FVPADSARIGWVDKIFARVGASDNISLGESTFMVEMSEAADILNNLSDRSLIIFDELGRG 704 Query: 742 TATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 T+T DG+SIAWA +EY+HE T+ + L +TH+HEL ++ K +R N + V + + + Sbjct: 705 TSTYDGISIAWAIVEYIHEHPTSHPKTLFSTHYHELNEMEKYFERIKNYNISVKEIDNKV 764 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 IFL K+ G + HS+GI V K+AG+P V+ R ++IL E +NQK Sbjct: 765 IFLRKLARGGSKHSFGIHVAKMAGIPKNVVQRGHEILFQLET---NNQK 810 >gi|303254066|ref|ZP_07340182.1| DNA mismatch repair protein [Streptococcus pneumoniae BS455] gi|302598976|gb|EFL66006.1| DNA mismatch repair protein [Streptococcus pneumoniae BS455] Length = 844 Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust. Identities = 290/883 (32%), Positives = 478/883 (54%), Gaps = 58/883 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFY+LF++DA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYVDIKKQYPDAFLLFRMGDFYDLFYEDAVNAAQILEISLTSRNKNADNPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI+ G+++AI EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPYHSAQQYIDVLIEQGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSSK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEKEL 204 + +N+L+++ R ++ +A++D+ TG F ++ L+ +I + RE++ +L Sbjct: 121 PDSQNNFLVSIDREGNQFGLAYMDLVTGDFYVTGLLDFTLVCGEIRNLKAREVVLG-YDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E + L + V + F D + + R+A VE+TA++ + Sbjct: 180 SEEEEQILSRQMNLVLSYEKESFEDLHLLDLRLA---------------TVEQTASSKLL 224 Query: 265 SYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 Y+ +TQM KP I Y +I+ L +D A +++L+++ SG ++ SL +D Sbjct: 225 QYVHRTQMRELNHLKPVIRY----EIKDFLQMDYATKASLDLVENARSGKKQGSLFWLLD 280 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL I PL D +I R + + F+ + + + LK D+ R S Sbjct: 281 ETKTAMGMRLLRSWIHRPLIDKERIVQRQEVVQVFLDHFFERSDLTDSLKGVYDIERLAS 340 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G+ PKD+ + + S I + + P L + +L +P+ LE +S+ + Sbjct: 341 RVSFGKTNPKDLLQLATTLSSVPRIRAILEGMEQPT-LAYLIAQLDAIPE-LESLISAAI 398 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + + P DGG +R G D +LD+ R + + IA ++ K E + I LKI +N Sbjct: 399 APEAPHVITDGGIIRTGFDETLDKYRCVLREGTSWIAEIEAKERENSGISTLKIDYNKKD 458 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+ VT+S + F + T+ N RF T EL +E + A + +E Sbjct: 459 GYYFHVTNSQLGNVPA------HFFRKATLKNSERFGTEELARIEGDMLEAREKSANLEY 512 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F + + + + L +Q IA +D+ +LA++A+ Q+ RP + + ++ GRH Sbjct: 513 EIFMRIREEVGKYIQRLQALAQGIATVDVLQSLAVVAETQHLIRPEFGDDSQIDIRKGRH 572 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 +VEK + Q+ +I N ++ + L+TGPNM GKST++RQ A+ +MAQ+ Sbjct: 573 AVVEKVMGAQT---YIPNTIQMA-----EDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQL 624 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSY+PA AH+ I D +F+R+G+AD+L SG+STFMVEM+E + ++ AT S ++ DE+G Sbjct: 625 GSYIPAESAHLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELG 684 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A + IEY+HE + L ATH+HELT L SL+ N + + + + Sbjct: 685 RGTATYDGMALAQSIIEYIHEHIGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQV 744 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 FLHK+ PG AD SYGI V K+AGLP +++RA IL E + MR QT Sbjct: 745 TFLHKIEPGPADKSYGIHVAKIAGLPADLLARADKILTQLENQGTESPPPMR------QT 798 Query: 860 KESKNNLSKNDKL----FVEKIKCLNLDEMSPLTALKTLYAVK 898 +S D+ + ++ L++ M+P+ + L +K Sbjct: 799 SAVTEQISLFDRAEEHPILAELAKLDVYNMTPMQVMNVLVELK 841 >gi|322375076|ref|ZP_08049590.1| DNA mismatch repair protein MutS [Streptococcus sp. C300] gi|321280576|gb|EFX57615.1| DNA mismatch repair protein MutS [Streptococcus sp. C300] Length = 844 Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust. Identities = 291/883 (32%), Positives = 478/883 (54%), Gaps = 58/883 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYVDIKKQYPDAFLLFRMGDFYELFYEDAINAAQILEISLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI+ G+++AI EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPYHSAQQYIDVLIEQGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSSK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEKEL 204 + +N+L+A+ R +++ +A++D+ TG F ++ L+ +I + RE++ +L Sbjct: 121 PDSQNNFLVAIDRDGSQFGLAYMDLVTGDFYVTGLLDFTLVCGEIRNLKAREVVLG-YDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 E + L + V + F D + +SR+A VE+ AA+ + Sbjct: 180 PEEEEQILSRQMNLVISYEKEGFEDIHLLDSRLA---------------AVEQAAASKLL 224 Query: 265 SYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 Y+ +TQM KP I Y +I+ L +D A +++L+++ SG ++ SL +D Sbjct: 225 QYVHRTQMRELNHLKPVIRY----EIKDFLQMDYATKASLDLVENARSGKKQGSLFWLLD 280 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL I PL D +I R + + F+ + + + LK D+ R S Sbjct: 281 ETKTAMGMRLLRSWIHRPLIDKERIVQRQEVVQVFLDHFFERSDLTDSLKGVYDIERLAS 340 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G+ PKD+ + + S I + + P L +++L +P+ LE +S+ + Sbjct: 341 RVSFGKTNPKDLLQLATTLSSVPRIRAILEGLEQPA-LAYLIKQLDAIPE-LESLISAAI 398 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + + P +GG +R G D +LD+ R + + IA ++ K E + I LKI +N Sbjct: 399 APEAPHVITEGGIIRTGFDETLDKYRRVLREGTSWIAEIEAKERENSGISTLKIDYNKKD 458 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+ VT+S + F + T+ N RF T EL +E + A + +E Sbjct: 459 GYYFHVTNSQLGNVPA------HFFRKATLKNSERFGTEELARIEGDMLEAREKSANLEY 512 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F + + + + L +Q IA +D+ +LA++A+ Q+ RP + ++ GRH Sbjct: 513 EIFMRIREEVSKYIQRLQALAQGIATVDVLQSLAVVAETQHLIRPEFGEDSQIAIQKGRH 572 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 +VEK + Q+ +I N ++ + L+TGPNM GKST++RQ A+ +MAQ+ Sbjct: 573 AVVEKVMGAQT---YIPNTIQMA-----EDTSIQLITGPNMSGKSTYMRQLAMTAVMAQL 624 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPA A++ I D +F+R+G+AD+L SG+STFMVEM+E + ++ AT S ++ DE+G Sbjct: 625 GSYVPAESAYLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANNAISHATKDSLILFDELG 684 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A + IEY+HE + L ATH+HELT L SL+ N + + + + Sbjct: 685 RGTATYDGMALAQSIIEYIHEHIGAKTLFATHYHELTSLESSLEHLVNVHVATLEQDGQV 744 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 FLHK+ PG AD SYGI V K+AGLP +++RA IL E + MR +T Sbjct: 745 TFLHKIEPGPADKSYGIHVAKIAGLPGELLARADKILTQLENQGTESPAPMR------ET 798 Query: 860 KESKNNLSKND----KLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +S D + ++ L++ M+P+ A+ L +K Sbjct: 799 SAVTEQMSLFDTPEEHPILAELAKLDVYNMTPMQAMNVLVELK 841 >gi|24380425|ref|NP_722380.1| DNA mismatch repair protein MutS [Streptococcus mutans UA159] gi|44888210|sp|Q8DRW8|MUTS_STRMU RecName: Full=DNA mismatch repair protein mutS gi|24378451|gb|AAN59686.1|AE015031_2 DNA mismatch repair protein [Streptococcus mutans UA159] Length = 849 Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust. Identities = 292/878 (33%), Positives = 489/878 (55%), Gaps = 43/878 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYPDAFLLFRMGDFYELFYDDAIKAAQILEISLTSRNKNADNPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI +G+++AI EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPYHSAQQYIDVLIDLGYKVAIAEQMEDPKKAV-----GVVKREVVQVITPGTVV-DSTK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204 + +N+L+++ +++ ++++D+STG F +T ++ + S+++ + RE++ EL Sbjct: 121 PDSANNFLVSLDTDGSQFGLSYMDLSTGEFYATTLADLPAVRSEVLNLKTRELVIG-FEL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E LF N+ ++ F+ ++ Y ++ +D +E AA + Sbjct: 180 SENE-DQLFRKQMNLLLS-----FEKTV-------YDDVHLLD--DQLKAIELAAAGKLL 224 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSIT 323 Y+ TQ + +I+ L + A +S+L++L SG + SL +D + T Sbjct: 225 QYVHNTQKRELSHLQKLVHYEIKDYLQMAYATKSSLDLLENARSGKKHGSLYWLLDETKT 284 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL I PL S+ I+ R D I F+ + + + LK D+ R SR+ Sbjct: 285 AMGTRLLRTWIDRPLVSSSLISKRQDIIQTFLDHFFERSDLSDSLKGVYDIERLASRVSF 344 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 G+ PKD+ + + S + ++ L++ L + ++ LP+ LE + S + + Sbjct: 345 GKANPKDLLQLGQTL-SQVPVIKTILESFASSSLESLINQIDTLPE-LEALIRSAIDSNA 402 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P +GG +R+G D +LD+ R++ + IA ++ K +++ I LKI +N GY+ Sbjct: 403 PITITEGGMIREGFDETLDKYRTVMREGTSWIADIETKERQKSGISTLKIDYNKKDGYYF 462 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 VT+S+ S++ D F + T+ N RF T EL +E + A + +E + F Sbjct: 463 HVTNSNLSLVP------DYFFRKATLKNSERFGTAELAKIEGEMLEAREESANLEYDIFM 516 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 + + + E L N ++ +A +D+ +LA++A+ +Y RP ++ +++GRH +VE Sbjct: 517 RIRSQVESYIERLQNLAKSLATVDVLQSLAVVAENNHYVRPSFNHQQEISIENGRHAVVE 576 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 K + S+ +I N + + K S + L+TGPNM GKST++RQ AL VIMAQ+GS+V Sbjct: 577 KVM---GSQEYIPNTINF---DQKTS--IQLITGPNMSGKSTYMRQLALTVIMAQLGSFV 628 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 A A + I D +F+R+G+AD+L SG+STFMVEM+E + AT S ++ DE+GRGTA Sbjct: 629 AADSADLPIFDAIFTRIGAADDLISGQSTFMVEMMEANHAIKAATPNSLILFDELGRGTA 688 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DG+++A A IEY+H + L ATH+HELTDLS L N + + + + FLH Sbjct: 689 TYDGMALAQAIIEYIHNKVGAKTLFATHYHELTDLSTRLTSLVNVHVATLEKDGEVTFLH 748 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESK 863 K+ G AD SYGI V K+AGLP +++RA IL EK+ +++ E Q E + Sbjct: 749 KIADGPADKSYGIHVAKIAGLPKDLLNRADHILVDLEKMSAAVSVNLKNETKESQPVEEQ 808 Query: 864 NNL---SKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +L N + ++K+K L+L ++P ++ L+ +K Sbjct: 809 LSLFAIDNNYEELIKKLKQLDLTNLTPRESMNALFDLK 846 >gi|327467947|gb|EGF13437.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK330] Length = 849 Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust. Identities = 292/886 (32%), Positives = 476/886 (53%), Gaps = 59/886 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYPDAFLLFRMGDFYELFYDDAVNAAQILEISLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI L++ G+++AI EQ+E P EAK +V+R VV+++TPGT+ + Sbjct: 67 VPYHSAQQYIDVLVESGYKVAIAEQMEDPKEAK-----GVVKREVVQVITPGTVVDS--- 118 Query: 146 SPTDS--NYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEK 202 S DS N+L+A+ + +A++D+ TG F++++ L+ +I + RE++ Sbjct: 119 SKPDSANNFLVALDYSEGLYGLAYMDLVTGEFQVTSLEDFALVCGEIRNLKAREVVLG-- 176 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS-FSQVEKTAAA 261 +L E V Q N+ S ++ + D V G S +E+ AA Sbjct: 177 -------YALPEAEEQVLAGQMNLLL--SYVQTALDD------VQLLGEELSPMERQAAG 221 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 + Y+ +TQM + + +I+ L +D A +++L++ SG + SL +D Sbjct: 222 KLLEYVHRTQMRELSHLKKAQHYEIKDFLQMDYATKASLDLTENARSGKKHGSLYWLMDE 281 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGR+ I PL D +I+ R + + F+ + + + + LK D+ R SR Sbjct: 282 TKTAMGGRMLRSWIQRPLIDEARISQRQNVVEVFLDHFFERSDLTESLKGVYDIERLASR 341 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + G+ PKD+ + + + + L+ L +E L +P+ L +SS +S Sbjct: 342 VSFGKTNPKDLLQLAATL-GNVPQIKAILQGIGSPHLARLIEGLDPIPE-LAGLISSAIS 399 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D P +G +R G D +LD+ R + IA L++K + I NLKI +N G Sbjct: 400 PDAPHIITEGNIIRTGFDETLDQYRLVLRDGTGWIAELEVKERANSGISNLKIDYNKKDG 459 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+ VT+S + F + T+ N RF T EL +E + A + +E E Sbjct: 460 YYFHVTNSQLA------HVPSHFFRKATLKNSERFGTEELARIEGEMLEAREKSANLEYE 513 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F + + + L +Q +A +D+ + A +A++ + RP+ + ++ GRH Sbjct: 514 IFMRIREEAGKYIQRLQALAQTLAAVDVLQSFAAVAEQLHLVRPVFTSERRLQIEKGRHA 573 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + QS +I N L D + L+TGPNM GKST++RQ A+IVIMAQMG Sbjct: 574 VVEKVMGAQS---YIPNSILLDQETD-----IQLITGPNMSGKSTYMRQLAIIVIMAQMG 625 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 SYVPA A + + D +F+R+G+AD+L SG+STFMVEM+E + QA+ +S ++ DE+GR Sbjct: 626 SYVPAQSASLPLFDAIFTRIGAADDLVSGQSTFMVEMMEANRAIRQASERSLILFDELGR 685 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A IE++H + L ATH+HELT L +SL+ N + + + + Sbjct: 686 GTATYDGMALAQAIIEHIHHYTGAKTLFATHYHELTALEESLEHLENVHVATLEKDGQVT 745 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 FLHK+ PG AD SYGI V K+AGLP ++ RA IL E D L +++ Sbjct: 746 FLHKIEPGPADKSYGIHVAKIAGLPEKLLERADSILSHLES--QDTGIDSEL---PTESR 800 Query: 861 ESKNNLSKNDKLFVE--------KIKCLNLDEMSPLTALKTLYAVK 898 ++++ +++ LF E +++ L++ M+PL + + +K Sbjct: 801 QTRSQVAEQMTLFAEGLENPVLTELRDLDIYNMTPLEVMAAVADLK 846 >gi|227517230|ref|ZP_03947279.1| DNA mismatch repair protein [Enterococcus faecalis TX0104] gi|227075327|gb|EEI13290.1| DNA mismatch repair protein [Enterococcus faecalis TX0104] Length = 858 Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust. Identities = 292/897 (32%), Positives = 484/897 (53%), Gaps = 71/897 (7%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM QY+ IK+ D+ +FYR+GDFYELF++DA+ A++ L +TLT R ++ IPMC Sbjct: 7 NTPMMEQYLSIKAQYKDAFLFYRLGDFYELFYEDAINAAQILELTLTSRNRNADDPIPMC 66 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H A YI LI+ G+++AICEQ+E P + K +V+R VV+LVTPGT+ + Sbjct: 67 GVPYHAAQGYIDTLIEQGYKVAICEQVEDP-----KTTKGMVKREVVQLVTPGTVMNSKG 121 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 L D+NYL AV ++ A++D+STG K + ++ + ++++ + +E++ Sbjct: 122 LEAKDNNYLTAVLTDGNQFGFAYVDLSTGELKTAVLADEEGVLNEASALQTKEMVLG--- 178 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + E+L + N+ F + A++ +T + +E Sbjct: 179 ------SGIPESLKENLSLRLNIIFSTQETVEENAEFSFLTN----ELINPLEIEITGKL 228 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 +SY+ TQ + I L +D ++ NLE+ +++ +G ++ +LL +D + Sbjct: 229 LSYLSVTQKRSLSHIQKAVEYQPDHFLKMDHYSKFNLELSQSIRTGQKKGTLLWLLDETK 288 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGRL + + PL +I R + + + +Q L + D+ R R+ Sbjct: 289 TAMGGRLLKQWLDRPLIQERQIKARQEMVQSLLNAYFERLDLQAALTNVYDLERLAGRVA 348 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLK------NDLPEELRGAVEKLKKLPQSLEKTLS 436 G +D+ +R + I L + +DL +L VE L L ++ Sbjct: 349 FGSVNGRDLIQLRTSLEQVPTIRQLIVGINQGEWDDLLVDL-NPVEDLVAL-------IA 400 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + ++++ P +G ++DG + LDE R K+ +A L+ K +ET IKNLKI +N Sbjct: 401 TAINEEAPLQITEGNVIKDGYNDQLDEYRDAMRNGKQWLAELEAKERQETGIKNLKIGYN 460 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GYFIE+T S+ + L++ ++ +QT++N RF T EL +LE I A ++ Sbjct: 461 RVFGYFIEITKSNLANLEEG-----KYERKQTLANAERFITPELKELERLILEAEEKSVE 515 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII-DNSTNFIVK 615 +E + F + + + L ++ I+ +D+ + A +++ Y RP + N+ N + Sbjct: 516 LEYQLFLAVREQVKTNIDRLQTLAKTISAVDVLQSFATISERYQYVRPTLRSNTKNLAIV 575 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 +GRHP+VEK L Q +I N ++ D + L+TGPNM GKST++RQ AL V+ Sbjct: 576 EGRHPVVEKVLGHQE---YIPNSIRMTPETD-----ILLITGPNMSGKSTYMRQLALTVV 627 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+G +VPA A + I D++F+R+G++D+L +G+STFMVEM+E L AT S ++ Sbjct: 628 MAQIGCFVPAESAEMPIFDQIFTRIGASDDLIAGQSTFMVEMMEANQALRHATPNSLILF 687 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGTAT DG+++A A IEY+H + + L +TH+HELT L ++LK N + + Sbjct: 688 DELGRGTATYDGMALAQAIIEYIHREVQAKTLFSTHYHELTVLDETLKGLKNIHVGAVEK 747 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--------------K 841 + ++FLHK++ G AD SYGI V K+AGLP+ ++ RA IL E Sbjct: 748 DGEVVFLHKMMEGPADKSYGIHVAKIAGLPSPLLERAATILSALEAEETTIPSSVHHEEV 807 Query: 842 LYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 H + + + E+ T+E LS ++ +K +NL EM+PL AL L+ ++ Sbjct: 808 SEVHEETEQLSLFKEVSTEE----LS-----VIDTLKKMNLLEMTPLDALNMLHQLQ 855 >gi|325919899|ref|ZP_08181888.1| DNA mismatch repair protein MutS [Xanthomonas gardneri ATCC 19865] gi|325549608|gb|EGD20473.1| DNA mismatch repair protein MutS [Xanthomonas gardneri ATCC 19865] Length = 851 Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust. Identities = 293/884 (33%), Positives = 470/884 (53%), Gaps = 48/884 (5%) Query: 29 MRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPV 88 M+Q+ KS PD L+F+RMGDFYELF+DDA A+R L ITLT+RG G IPM GVPV Sbjct: 1 MKQFFAAKSDYPDLLLFFRMGDFYELFYDDARKAARLLDITLTQRGSSGGAPIPMAGVPV 60 Query: 89 HTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPT 148 H Y+ +L+ +G +AICEQI P AK LV R VVR+VTPGT+T++ LL Sbjct: 61 HAYEGYLARLVALGESVAICEQIGDPALAK-----GLVERKVVRIVTPGTVTDEALLDER 115 Query: 149 DSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEKELSHA 207 LMA++R + + +AW D++ G F ++ + D L ++I R++P E++ +++ + Sbjct: 116 RDTLLMAISRSKQGYGLAWADLAGGRFLVNEVDSVDALEAEIARLEPAELLVPDED-NWP 174 Query: 208 EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAISY 266 E F +P FD ++ ++ + + FG AA A + Y Sbjct: 175 E----FLRGRVGVRRRPPWLFDADSGRRQLLAFFKLHDLSGFGIDDKPCATAAAGALLGY 230 Query: 267 IKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAG 326 +++TQ P + E + +++A R +LE+ + G +LL +D +IT G Sbjct: 231 VEETQKQRLPHLTSIAMEVASEAISMNAATRRHLELDTRVDGDTRNTLLGVLDSTITPMG 290 Query: 327 GRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRG 386 GRL + PL + R ++ I + +++ ++ D+ R L+R+ + Sbjct: 291 GRLLRRWLHRPLRLREVLVQRHQAVGSLIDTGADAD-VREAFRALGDLERILTRVALRSA 349 Query: 387 EPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK------TLSSMLS 440 P+D + +RDG+ + + D P +L+ L L + L S ++ Sbjct: 350 RPRDFSTLRDGLALLPKVRTILAPLDSP--------RLQTLYAELGEHDATAHLLISAVA 401 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 + P DGG + G DA LDE R L + + + L+ + + I LK+ +N G Sbjct: 402 EQPPLKLSDGGVIATGYDADLDELRRLSTNADQFLIDLEQRERASSGIATLKVGYNRVHG 461 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IE++ A ++ + RQT++N R+ T EL E+++ +A +L E Sbjct: 462 YYIEISKGQAE------KAPLHYSRRQTLTNAERYITEELKSFEDKVLSARERSLSREKL 515 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 +E L +A+ + E L + ++ +D+ A A+ ++ +P +D++ ++ GRHP Sbjct: 516 LYEGLLDALGGELEGLKRCASALSELDVLAGFAERAQALDWSQPELDSAPCLRIERGRHP 575 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE Q PF ND DL ++ ++TGPNMGGKST++RQNALIV++A +G Sbjct: 576 VVEAVRDQ----PFEPNDLDLHTDR-----RMLVITGPNMGGKSTYMRQNALIVLLAHIG 626 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 SYVPAS A IG +D++ +R+G+ D+LA G+STFMVEM ET+ IL+ AT QS V++DEIGR Sbjct: 627 SYVPASRAVIGPIDRILTRIGAGDDLARGQSTFMVEMAETSYILHHATPQSLVLMDEIGR 686 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK-----SLKRFHNATLQVSDS 795 GT+T DGL++A A +L TNRC L ATH+ ELT L+ N L + Sbjct: 687 GTSTYDGLALADAVARHLAHTNRCYTLFATHYFELTALADESHAGGASGIANVHLDAVEH 746 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 E ++F+H V G A+ S+G+QV LAGLP +++A L E+ + ++ Sbjct: 747 GERLVFMHAVKDGPANRSFGLQVAALAGLPKAAVTQARHRLAELEQRGGESHV-AQMAPA 805 Query: 856 EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + + + E ++ L+ DE++P AL+ LY +KA Sbjct: 806 ALDAPQQFGLFTAPSSAAQEALQALDPDELTPKQALEALYRLKA 849 >gi|42528103|ref|NP_973201.1| DNA mismatch repair protein MutS [Treponema denticola ATCC 35405] gi|48428293|sp|P61672|MUTS_TREDE RecName: Full=DNA mismatch repair protein mutS gi|41819148|gb|AAS13120.1| DNA mismatch repair protein MutS [Treponema denticola ATCC 35405] Length = 891 Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust. Identities = 312/922 (33%), Positives = 486/922 (52%), Gaps = 85/922 (9%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TPMMRQY+ IK+ D ++F+R+GDFYE+FFD+A+ SR L +TLTKR D+P Sbjct: 3 KPQTPMMRQYLSIKAKYKDEILFFRLGDFYEMFFDEAVEVSRILNLTLTKRN-----DVP 57 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCG+P H A YI +L++ G +IAICEQ+ P+ L R VV ++TPGT+ ED Sbjct: 58 MCGIPYHAAKIYIARLLRAGKKIAICEQVTEPVAG------GLTERKVVEVITPGTVAED 111 Query: 143 QLLSPTDSNYLMAV--ARIRTEW--------AIAWIDISTGIFKIS----TSNHDRLISD 188 L +NYL AV + +TE +A+ID++TG F + T ++ + + Sbjct: 112 DFLEQGSNNYLAAVYCSNKKTEGNSGFDYYAGLAYIDVTTGNFFATSFPKTDFKEQFLKE 171 Query: 189 IMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSI----SESRIADYYNIT 244 I RI+P+EI+ + E+ +L + L N + D S +E R+ + Sbjct: 172 IGRINPKEILIQQS--IQNEFPALKQILSEFPSMMQNFYPDWSFNPDQAEKRLCSTFGTE 229 Query: 245 TVDTF------------GSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFI 292 + F G Q + + IS+I ++ Y E + + + Sbjct: 230 NLKGFLLNTDSPEVPPAGLLLQYLEEISGRDISHISGIKI-------YAESDFVS----L 278 Query: 293 DSAARSNLEILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSI 351 D + R NLE+L L S SL ++++Y+ T G RL RI+ PL +I+ RLD + Sbjct: 279 DDSTRKNLELLTNLRDNSPSYSLFESVNYTKTAMGTRLLRRRISYPLRSKNEIDKRLDKV 338 Query: 352 NFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN 411 N ++ I++ L S D+ R R+ + + KD+ ++ + S I + +L + Sbjct: 339 NSLFKDGKASAIIRETLSSILDIERLSGRIAMQKTHGKDLLALKQSLNSVIRMGSLIEEK 398 Query: 412 DLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQS 471 L ++ KKL + L + + DD DG ++ G +D +++++ + Sbjct: 399 KL--NFLQLNDEEKKLLTEIRDLLENSIDDDCTIALNDGKLIKKGFSKKVDTIKNIKENA 456 Query: 472 KRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSN 531 I+ ++T I NLKIK+N +GYF+EV+ + S + D FI ++++SN Sbjct: 457 HEILEKYLDDERKKTGINNLKIKYNRMMGYFLEVSLGNISAVP------DYFIRQRSLSN 510 Query: 532 LTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIA 591 RFTT L +E+ I N+ + E E F+ + I L ++ +A +D++ + Sbjct: 511 ADRFTTESLKQIEDNINNSEERLIEAEKEVFDEVCTEIGSHHCFLQKLAEEVAELDVNQS 570 Query: 592 LAILAKEQNYCRPIIDNSTNFI-VKDGRHPIVEKTLKQQSSKPFIANDCDL-----SCPN 645 A A + RP + + + + + GRHP+VE L+ + F+ N L S P Sbjct: 571 FAQAAVLHAWTRPELCSDSGILNITGGRHPVVENHLR---AGDFVPNSIKLLSGENSNPE 627 Query: 646 DKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADN 705 D+ ++TGPNM GKSTFLRQ ALI ++AQ+GS+VPA A + VDK+F RVG+ DN Sbjct: 628 DETIPSFAVITGPNMAGKSTFLRQTALICLLAQIGSFVPAEKAVLSPVDKIFCRVGATDN 687 Query: 706 LASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCR 765 LA G STF+VEMIETA ILN AT S VI+DE+GRGT+ DGL+IA A E+L T + + Sbjct: 688 LARGESTFLVEMIETAYILNSATRNSLVIMDEVGRGTSMEDGLAIAQAVSEHLLNTIKAK 747 Query: 766 GLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLP 825 L ATH+HELT L ++ N L V ++ I+FL KV+ G A +SYGI V LAG+P Sbjct: 748 TLFATHYHELTRLEH--EKIINLKLDVLEAEGKIVFLKKVVHGAAGNSYGIHVAGLAGIP 805 Query: 826 NTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDK---LFVEKIKCLN- 881 +V++RA ++L + + ++ ++ P Q E K S +K LF E+ LN Sbjct: 806 QSVLTRAENLL--YMRSQFQKERTIQEARPSAQGSEEKTPSSPAEKGLSLFPEEELILNE 863 Query: 882 -----LDEMSPLTALKTLYAVK 898 DE +P+ AL+ + + K Sbjct: 864 ILSTDPDETAPIKALQLIASWK 885 >gi|296330917|ref|ZP_06873392.1| DNA mismatch repair protein MutS [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674435|ref|YP_003866107.1| DNA mismatch repair protein MutS [Bacillus subtilis subsp. spizizenii str. W23] gi|296151922|gb|EFG92796.1| DNA mismatch repair protein MutS [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412679|gb|ADM37798.1| DNA mismatch repair protein MutS [Bacillus subtilis subsp. spizizenii str. W23] Length = 858 Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust. Identities = 286/890 (32%), Positives = 496/890 (55%), Gaps = 57/890 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY++IK+ + D+ +F+R+GDFYE+FF+DA AS+ L ITLT R + IPMCG Sbjct: 5 TPMIQQYLKIKAEHQDAFLFFRLGDFYEMFFEDAKKASQELEITLTSRDGGAAEKIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A+ YI++LIK G+++AICEQ E P + K +V+R VV+L+TPGT+ + + + Sbjct: 65 VPYHSASAYIEQLIKKGYKVAICEQTEDP-----KAAKGVVKREVVQLITPGTVMDGKGI 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGI-FKISTSNHDRLISDIMRIDPREIIFSEKEL 204 +++N++ +V+ + +A D++TG + + +IS+I + REI+ S L Sbjct: 120 HESENNFIASVSACSNGYGLALSDLTTGENLAVLIERLEDVISEIYSVGAREIVVS-GSL 178 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 L E G + + ++ + ++ D +F ++ Sbjct: 179 DADTVAQLKERCG------ATISIEDGETDEHVMIIEHLDNEDVTKTFLRL--------Y 224 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSIT 323 +Y+K+TQ + + + +++ + ID ++ NLE+ T+ S +++ SLL +D + T Sbjct: 225 TYLKRTQKRSLDHLQPVQVYELEEAMKIDLYSKRNLELTETIRSKNKKGSLLWLLDETKT 284 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 GGRL + I PL +I R + + + + +++ LK D+ R R+ Sbjct: 285 AMGGRLLKQWIDRPLIRVNQIEERQEMVETLMSHFFEREDLRERLKEVYDLERLAGRVAF 344 Query: 384 GRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 G +D+ +++ ++ GI L L +D +E ++ + + LE+ L + Sbjct: 345 GNVNARDLIQLKESLKQVPGIKQLVASLAHDKAKERAERIDPCGDVLELLEEALYA---- 400 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + P ++G ++DG + LDE R K IA L+ + E T I++LK+ N GY Sbjct: 401 NPPLSLKEGNLIKDGYNQKLDEYRDASRNGKDWIARLEQQEREYTGIRSLKVGFNKVFGY 460 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IEVT ++ +L++ R+ +QT++N R+ T EL + E I A N+ +E E Sbjct: 461 YIEVTRANLHLLEEG-----RYERKQTLTNAERYITPELKEKEALILEAENNICELEYEL 515 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 F L + L ++ ++ +D A +++ ++Y +P +V +GRHP+ Sbjct: 516 FTELREKVKLYIPRLQQLAKQMSELDALQCFATISENRHYTKPEFSKDEVEVV-EGRHPV 574 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VEK + S+ ++ N+C + ++ ++ L+TGPNM GKST++RQ ALI IMAQ+G Sbjct: 575 VEKVM---DSQEYVPNNCMMG-----DNRQMLLITGPNMSGKSTYMRQIALISIMAQIGC 626 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA A + I D++F+R+G+AD+L SG+STFMVEM+E + + AT S ++ DEIGRG Sbjct: 627 FVPAKKAVLPIFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIVNATKNSLILFDEIGRG 686 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 T+T DG+++A A IEY+H+ + L +TH+HELT L L + N ++ + N ++F Sbjct: 687 TSTYDGMALAQAIIEYVHDHIGAKTLFSTHYHELTVLEDKLPQLKNVHVRAEEYNGTVVF 746 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKE 861 LH++ G AD SYGI V +LA LP +ISRA DILK E + N+ ++ + P+++ + Sbjct: 747 LHQIKEGAADKSYGIHVAQLAELPEDLISRAQDILKELE--HSGNKPEVPVQKPQVKEEP 804 Query: 862 SK-------------NNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ LSK +K ++ K LN+ +M+PL A+ +Y ++ Sbjct: 805 AQLSFFDEAEKPAEAPKLSKKEKQVLDAFKSLNILDMTPLEAMNEMYKLQ 854 >gi|295114467|emb|CBL33104.1| DNA mismatch repair protein MutS [Enterococcus sp. 7L76] Length = 858 Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust. Identities = 292/897 (32%), Positives = 484/897 (53%), Gaps = 71/897 (7%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM QY+ IK+ D+ +FYR+GDFYELF++DA+ A++ L +TLT R ++ IPMC Sbjct: 7 NTPMMEQYLSIKAQYKDAFLFYRLGDFYELFYEDAINAAQILELTLTSRNRNADDPIPMC 66 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H A YI LI+ G+++AICEQ+E P + K +V+R VV+LVTPGT+ + Sbjct: 67 GVPYHAAQGYIDTLIEQGYKVAICEQVEDP-----KTTKGMVKREVVQLVTPGTVMNSKG 121 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 L D+NYL AV ++ A++D+STG K + ++ + ++++ + +E++ Sbjct: 122 LEAKDNNYLTAVLTDGNQFGFAYVDLSTGELKTAVLADEEGVLNEASALQTKEMVLG--- 178 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + E+L + N+ F + A++ +T + +E Sbjct: 179 ------SGIPESLKENLSLRLNIIFSTQETVEENAEFSFLTN----ELINPLEIEITGKL 228 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 +SY+ TQ + I L +D ++ NLE+ +++ +G ++ +LL +D + Sbjct: 229 LSYLSVTQKRSLSHIQKAVEYQPDHFLKMDHYSKFNLELSQSIRTGQKKGTLLWLLDETK 288 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGRL + + PL +I R + + + +Q L + D+ R R+ Sbjct: 289 TAMGGRLLKQWLDRPLIQERQIKARQEMVQSLLNAYFERLDLQAALTNVYDLERLAGRVA 348 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLK------NDLPEELRGAVEKLKKLPQSLEKTLS 436 G +D+ +R + I L + +DL +L VE L L ++ Sbjct: 349 FGSVNGRDLIQLRTSLEQVPTIRQLIVGINQGEWDDLLVDL-NPVEDLVAL-------IA 400 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + ++++ P +G ++DG + LDE R K+ +A L+ K +ET IKNLKI +N Sbjct: 401 TAINEEAPLQITEGNVIKDGYNDQLDEYRDAMRNGKQWLAELEAKERQETGIKNLKIGYN 460 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GYFIE+T S+ + L++ ++ +QT++N RF T EL +LE I A ++ Sbjct: 461 RVFGYFIEITKSNLANLEEG-----KYERKQTLANAERFITPELKELERLILEAEEKSVE 515 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII-DNSTNFIVK 615 +E + F + + + L ++ I+ +D+ + A +++ Y RP + N+ N + Sbjct: 516 LEYQLFLAVREQVKTNIDRLQTLAKTISAVDVLQSFATISERYQYVRPTLRSNTKNLAIV 575 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 +GRHP+VEK L Q +I N ++ D + L+TGPNM GKST++RQ AL V+ Sbjct: 576 EGRHPVVEKVLGHQE---YIPNSIRMNPETD-----ILLITGPNMSGKSTYMRQLALTVV 627 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+G +VPA A + I D++F+R+G++D+L +G+STFMVEM+E L AT S ++ Sbjct: 628 MAQIGCFVPAESAEMPIFDQIFTRIGASDDLIAGQSTFMVEMMEANQALRHATPNSLILF 687 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGTAT DG+++A A IEY+H + + L +TH+HELT L ++LK N + + Sbjct: 688 DELGRGTATYDGMALAQAIIEYIHREVQAKTLFSTHYHELTVLDETLKGLKNIHVGAVEK 747 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--------------K 841 + ++FLHK++ G AD SYGI V K+AGLP+ ++ RA IL E Sbjct: 748 DGEVVFLHKMMEGPADKSYGIHVAKIAGLPSPLLERAATILSALEAEEITIPSSVHHEEV 807 Query: 842 LYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 H + + + E+ T+E LS ++ +K +NL EM+PL AL L+ ++ Sbjct: 808 SEVHEETEQLSLFKEVSTEE----LS-----VIDTLKKMNLLEMTPLDALNMLHQLQ 855 >gi|255970641|ref|ZP_05421227.1| DNA mismatch repair protein [Enterococcus faecalis T1] gi|256761015|ref|ZP_05501595.1| DNA mismatch repair protein [Enterococcus faecalis T3] gi|256963000|ref|ZP_05567171.1| MutS 1 protein [Enterococcus faecalis HIP11704] gi|300861636|ref|ZP_07107720.1| DNA mismatch repair protein MutS [Enterococcus faecalis TUSoD Ef11] gi|307273665|ref|ZP_07554893.1| DNA mismatch repair protein MutS [Enterococcus faecalis TX0855] gi|307292185|ref|ZP_07572050.1| DNA mismatch repair protein MutS [Enterococcus faecalis TX0411] gi|312953268|ref|ZP_07772113.1| DNA mismatch repair protein MutS [Enterococcus faecalis TX0102] gi|255961659|gb|EET94135.1| DNA mismatch repair protein [Enterococcus faecalis T1] gi|256682266|gb|EEU21961.1| DNA mismatch repair protein [Enterococcus faecalis T3] gi|256953496|gb|EEU70128.1| MutS 1 protein [Enterococcus faecalis HIP11704] gi|300849097|gb|EFK76850.1| DNA mismatch repair protein MutS [Enterococcus faecalis TUSoD Ef11] gi|306496760|gb|EFM66312.1| DNA mismatch repair protein MutS [Enterococcus faecalis TX0411] gi|306509678|gb|EFM78720.1| DNA mismatch repair protein MutS [Enterococcus faecalis TX0855] gi|310628805|gb|EFQ12088.1| DNA mismatch repair protein MutS [Enterococcus faecalis TX0102] gi|315144208|gb|EFT88224.1| DNA mismatch repair protein MutS [Enterococcus faecalis TX2141] gi|315150785|gb|EFT94801.1| DNA mismatch repair protein MutS [Enterococcus faecalis TX0012] gi|315152838|gb|EFT96854.1| DNA mismatch repair protein MutS [Enterococcus faecalis TX0031] gi|315159533|gb|EFU03550.1| DNA mismatch repair protein MutS [Enterococcus faecalis TX0312] gi|315172874|gb|EFU16891.1| DNA mismatch repair protein MutS [Enterococcus faecalis TX1346] gi|327536288|gb|AEA95122.1| DNA mismatch repair protein MutS [Enterococcus faecalis OG1RF] Length = 858 Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust. Identities = 292/897 (32%), Positives = 484/897 (53%), Gaps = 71/897 (7%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM QY+ IK+ D+ +FYR+GDFYELF++DA+ A++ L +TLT R ++ IPMC Sbjct: 7 NTPMMEQYLSIKAQYKDAFLFYRLGDFYELFYEDAINAAQILELTLTSRNRNADDPIPMC 66 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H A YI LI+ G+++AICEQ+E P + K +V+R VV+LVTPGT+ + Sbjct: 67 GVPYHAAQGYIDTLIEQGYKVAICEQVEDP-----KTTKGMVKREVVQLVTPGTVMNSKG 121 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 L D+NYL AV ++ A++D+STG K + ++ + ++++ + +E++ Sbjct: 122 LEAKDNNYLTAVLTDGNQFGFAYVDLSTGELKTAVLADEEGVLNEASALQTKEMVLG--- 178 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + E+L + N+ F + A++ +T + +E Sbjct: 179 ------SGIPESLKENLSLRLNIIFSTQETVEENAEFSFLTN----ELINPLEIEITGKL 228 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 +SY+ TQ + I L +D ++ NLE+ +++ +G ++ +LL +D + Sbjct: 229 LSYLSVTQKRSLSHIQKAVEYQPDHFLKMDHYSKFNLELSQSIRTGQKKGTLLWLLDETK 288 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGRL + + PL +I R + + + +Q L + D+ R R+ Sbjct: 289 TAMGGRLLKQWLDRPLIQERQIKARQEMVQSLLNAYFERLDLQAALTNVYDLERLAGRVA 348 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLK------NDLPEELRGAVEKLKKLPQSLEKTLS 436 G +D+ +R + I L + +DL +L VE L L ++ Sbjct: 349 FGSVNGRDLIQLRTSLEQVPTIRQLIVGINQGEWDDLLVDL-NPVEDLVAL-------IA 400 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + ++++ P +G ++DG + LDE R K+ +A L+ K +ET IKNLKI +N Sbjct: 401 TAINEEAPLQITEGNVIKDGYNDQLDEYRDAMRNGKQWLAELEAKERQETGIKNLKIGYN 460 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GYFIE+T S+ + L++ ++ +QT++N RF T EL +LE I A ++ Sbjct: 461 RVFGYFIEITKSNLANLEEG-----KYERKQTLANAERFITPELKELERLILEAEEKSVE 515 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII-DNSTNFIVK 615 +E + F + + + L ++ I+ +D+ + A +++ Y RP + N+ N + Sbjct: 516 LEYQLFLAVREQVKTNIDRLQTLAKTISAVDVLQSFATISERYQYVRPTLRSNTKNLAIV 575 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 +GRHP+VEK L Q +I N ++ D + L+TGPNM GKST++RQ AL V+ Sbjct: 576 EGRHPVVEKVLGHQE---YIPNSIRMNPETD-----ILLITGPNMSGKSTYMRQLALTVV 627 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+G +VPA A + I D++F+R+G++D+L +G+STFMVEM+E L AT S ++ Sbjct: 628 MAQIGCFVPAESAEMPIFDQIFTRIGASDDLIAGQSTFMVEMMEANQALRHATPNSLILF 687 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGTAT DG+++A A IEY+H + + L +TH+HELT L ++LK N + + Sbjct: 688 DELGRGTATYDGMALAQAIIEYIHREVQAKTLFSTHYHELTVLDETLKGLKNIHVGAVEK 747 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--------------K 841 + ++FLHK++ G AD SYGI V K+AGLP+ ++ RA IL E Sbjct: 748 DGEVVFLHKMMEGPADKSYGIHVAKIAGLPSPLLERAATILSALEAEETTIPSSVHHEEV 807 Query: 842 LYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 H + + + E+ T+E LS ++ +K +NL EM+PL AL L+ ++ Sbjct: 808 SEVHEETEQLSLFKEVSTEE----LS-----VIDTLKKMNLLEMTPLDALNMLHQLQ 855 >gi|315606965|ref|ZP_07881971.1| DNA mismatch repair protein MutS [Prevotella buccae ATCC 33574] gi|315251346|gb|EFU31329.1| DNA mismatch repair protein MutS [Prevotella buccae ATCC 33574] Length = 889 Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust. Identities = 280/832 (33%), Positives = 457/832 (54%), Gaps = 30/832 (3%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 N K TPMMRQ+ ++KS +P++L+ +R GDFYE + +DA+ A+R LGITLT+R Sbjct: 4 NEKGLTPMMRQFFDMKSKHPEALLLFRCGDFYETYCEDAVEAARVLGITLTRRNNGGSTA 63 Query: 81 I-PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKK--RGNKSL------VRRNVV 131 + M G P H + Y+ KLI+ G R+AIC+Q+E P + ++ +G K L V+R + Sbjct: 64 VTEMAGFPHHALDTYLPKLIRAGKRVAICDQLEDPKKKREQIKGKKGLSEMDKMVKRGIT 123 Query: 132 RLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMR 191 LVTPG D +L+ ++N+L AV + ++++DISTG F +D + + Sbjct: 124 ELVTPGVAMGDNVLNYKENNFLAAVHFGKGACGVSFLDISTGEFLTGEGTYDYVEKLLGN 183 Query: 192 IDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS 251 P+E+++ +++ F T VF D S + ++ ++ ++ FG Sbjct: 184 FQPKEVLYDRAR--KQDFERYFGTRFCTFELDDWVFTDQS-ARQKLLKHFGTKSLKGFGV 240 Query: 252 FSQVEKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR 310 A+ AI Y++ TQ + I R + + +D +LE+L+ + Sbjct: 241 DHLKNGVIASGAIMQYLELTQHTHIGHITALARIEEDKFVRLDKFTARSLELLQPMQ-ED 299 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 SLL ID ++T G RL + PL D IN RLD +++F + P + + Sbjct: 300 GLSLLDVIDRTVTPMGSRLLRRWMVFPLKDVRPINERLDIVDYFFKKPDFRACVDEEFHR 359 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS 430 D+ R +S++ +GR P+++ +++ + + I + + + E L+ E+L L +S Sbjct: 360 MGDLERIISKVAVGRVSPREVVQLKNAL-TAIRPVKMACLSAGNEALKRVGEQLS-LCES 417 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L + + D P G + D LDE RS+ K + +Q + E+T I + Sbjct: 418 LRDRIDKEIQPDPPQLLNKGDVIADNYSPELDELRSISRHGKDYLLEIQQREIEKTGITS 477 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ NN GY++EV ++ KD + + ++ +QT++ R+ T EL + E +I A Sbjct: 478 LKVGFNNVFGYYLEVRNTF-----KD-KVPEEWVRKQTLAQAERYITQELKEYEEKILGA 531 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 +++E + F L A+ E + + ++A +D ++ A ++E Y RP ID S Sbjct: 532 DEKIIMLETKLFNELILAMQEFIPQIQIDANLVAHLDCLLSFAKTSEEHRYVRPTIDESE 591 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 +K GRH ++E L + ++ ND L D ++ ++TGPNM GKS LRQ Sbjct: 592 VLDIKQGRHAVIETQLP--IGEQYVPNDVYL----DTVKQQVMMITGPNMAGKSALLRQT 645 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALIV++AQ+G +VPA A IG+VDK+F+RVG++DN++ G STFMVEM E ++ILN + + Sbjct: 646 ALIVLLAQVGCFVPAESARIGLVDKIFTRVGASDNISLGESTFMVEMTEASNILNNVSGR 705 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNA 788 S V+ DE+GRGT+T DG+SIAWA +EYLHE R R L ATH+HEL ++ K+ R N Sbjct: 706 SLVLFDELGRGTSTYDGISIAWAIVEYLHEHPKARARTLFATHYHELNEMEKNFPRIKNY 765 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + V + N +IFL K+ G ++HS+GI V ++AG+P +++ RA ILK E Sbjct: 766 NVSVKELNGKVIFLRKLERGGSEHSFGIHVAEIAGMPRSIVKRANVILKQLE 817 >gi|323479096|gb|ADX78535.1| DNA mismatch repair protein MutS [Enterococcus faecalis 62] Length = 858 Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust. Identities = 292/897 (32%), Positives = 484/897 (53%), Gaps = 71/897 (7%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM QY+ IK+ D+ +FYR+GDFYELF++DA+ A++ L +TLT R ++ IPMC Sbjct: 7 NTPMMEQYLSIKAQYKDAFLFYRLGDFYELFYEDAINAAQILELTLTSRNRNADDPIPMC 66 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H A YI LI+ G+++AICEQ+E P + K +V+R VV+LVTPGT+ + Sbjct: 67 GVPYHAAQGYIDTLIEQGYKVAICEQVEDP-----KTTKGMVKREVVQLVTPGTVMNSKG 121 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 L D+NYL AV ++ A++D+STG K + ++ + ++++ + +E++ Sbjct: 122 LEAKDNNYLTAVLTDGNQFGFAYVDLSTGELKTAVLADEEGVLNEASALQTKEMVLG--- 178 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + E+L + N+ F + A++ +T + +E Sbjct: 179 ------SGIPESLKENLSLRLNIIFSTQETVEENAEFSFLTN----ELINPLEIEITGKL 228 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 +SY+ TQ + I L +D ++ NLE+ +++ +G ++ +LL +D + Sbjct: 229 LSYLSVTQKRSLSHIQKAVEYQPDHFLKMDHYSKFNLELSQSIRTGQKKGTLLWLLDETK 288 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGRL + + PL +I R + + + +Q L + D+ R R+ Sbjct: 289 TAMGGRLLKQWLDRPLIQERQIKARQEMVQSLLNAYFERLDLQAALTNVYDLERLAGRVA 348 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLK------NDLPEELRGAVEKLKKLPQSLEKTLS 436 G +D+ +R + I L + +DL +L VE L L ++ Sbjct: 349 FGSVNGRDLIQLRTSLEQVPTIRQLIVGINQGEWDDLLVDL-NPVEDLVAL-------IA 400 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + ++++ P +G ++DG + LDE R K+ +A L+ K +ET IKNLKI +N Sbjct: 401 TAINEEAPLQITEGNVIKDGYNDQLDEYRDAMRNGKQWLAELEAKERQETGIKNLKIGYN 460 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GYFIE+T S+ + L++ ++ +QT++N RF T EL +LE I A ++ Sbjct: 461 RVFGYFIEITKSNLANLEEG-----KYERKQTLANAERFITPELKELERLILEAEEKSVE 515 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII-DNSTNFIVK 615 +E + F + + + L ++ I+ +D+ + A +++ Y RP + N+ N + Sbjct: 516 LEYQLFLAVREQVKTNIDRLQTLAKTISAVDVLQSFATISERYQYVRPTLRSNTKNLAIV 575 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 +GRHP+VEK L Q +I N ++ D + L+TGPNM GKST++RQ AL V+ Sbjct: 576 EGRHPVVEKVLGHQE---YIPNSIRMNPETD-----ILLITGPNMSGKSTYMRQLALTVV 627 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+G +VPA A + I D++F+R+G++D+L +G+STFMVEM+E L AT S ++ Sbjct: 628 MAQIGCFVPAESAEMPIFDQIFTRIGASDDLIAGQSTFMVEMMEANQALRHATPNSLILF 687 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGTAT DG+++A A IEY+H + + L +TH+HELT L ++LK N + + Sbjct: 688 DELGRGTATYDGMALAQAIIEYIHREVQAKTLFSTHYHELTVLDETLKGLKNIHVGAVEK 747 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--------------K 841 + ++FLHK++ G AD SYGI V K+AGLP+ ++ RA IL E Sbjct: 748 DGEVVFLHKMMEGPADKSYGIHVAKIAGLPSPLLERAATILSALEAKETTIPSSVHHEEV 807 Query: 842 LYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 H + + + E+ T+E LS ++ +K +NL EM+PL AL L+ ++ Sbjct: 808 SEVHEETEQLSLFKEVSTEE----LS-----VIDTLKKMNLLEMTPLDALNMLHQLQ 855 >gi|306821116|ref|ZP_07454732.1| DNA mismatch repair protein MutS [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550809|gb|EFM38784.1| DNA mismatch repair protein MutS [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 868 Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust. Identities = 299/890 (33%), Positives = 486/890 (54%), Gaps = 54/890 (6%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 LK+ TPMM+QY++IK+ D ++F+R+GDFYE+FF+DA+ S+ L ITLT R + Sbjct: 16 LKNLTPMMKQYLDIKNKYQDCILFFRLGDFYEMFFEDAIETSKLLDITLTGRACGNNEKA 75 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A YIQ+LI G ++AICEQI+ P E K +V R + +++TPGT+ E Sbjct: 76 PMCGVPYHSAKSYIQRLINYGKKVAICEQIQDPKEVK-----GIVDRAITKIITPGTVLE 130 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 D+++ + +NY+M++ I+++DI+TG T N++ + + ++P EII E Sbjct: 131 DEMIQGSSNNYIMSLISNGKNLEISYVDITTGEVNNLTCNYNEIANIFFAVNPSEIIADE 190 Query: 202 ---KELSHAEYKS--LFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 K+LS ++K+ L L + NV S + Y I D S S++ Sbjct: 191 SFYKKLSSEDFKNSKLISNLIDENNIVQNVISQDSEDFEEFKEKYAIE--DVSESLSRIY 248 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 K Y+ TQ Y + Q+ +++D NLEI+ ++ + +L Sbjct: 249 K--------YVYDTQQFFDKNFFYQRSK--QAYMYLDYYTLKNLEIVESIRRNSNNTLFD 298 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 ++ + T G R + + PL + + I RL+ ++ F+ + I ILK D+ R Sbjct: 299 VLNKTNTSMGSRKLKQNLLKPLNNESDIKQRLEVLSCFVDDYSFTMNISSILKEIYDLER 358 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS-----L 431 +R+ KD+ ++ + + ++F + D E E + + + Sbjct: 359 ISNRIVYDSVSQKDLLNLKSSLICIKKLEDIFKEKD-NEYFALIYENISSVNYEVIIALI 417 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 EK++ M +DL + ++ D L R L D S I+ ++ + E+T IKNL Sbjct: 418 EKSIQEM-GEDLKYKHK----IKSSYDEKLAYYRKLMDNSSDILIKMEAEEREKTGIKNL 472 Query: 492 KIKHNNNLGYFIEVTSSSASVLK--KDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 KI +N GY+IE++ + K +D E RQT+ + RF L ++E + + Sbjct: 473 KINYNKVFGYYIEISKGALQNAKIPEDYE------RRQTLVSSERFINQSLKEIEQEMLS 526 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 A S + +E + + + I + + + + ++A +D+ +L+ A E +Y +P+I Sbjct: 527 ARQSEVSLENSLYSQVKDEIKKYIDRIMRLASIVADVDVYTSLSKTAIENDYVKPMIAVD 586 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 I+K+GRHP++EK L + F+ ND + +D+ + ++TGPNM GKST++RQ Sbjct: 587 NKLIIKNGRHPVIEKIL---TDDGFVPND---TIVDDEMT---HIITGPNMAGKSTYMRQ 637 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALIV+MA +GSYVPAS+A + I+D +++R+G++D+L+ G+STFMVEM E ++IL AT Sbjct: 638 VALIVLMAHIGSYVPASFASVPIIDGIYTRIGASDDLSMGQSTFMVEMSEVSNILKNATE 697 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 +S VILDEIGRGT+T DG+S+A+A +EY+ + + L++TH+HELT L N Sbjct: 698 KSLVILDEIGRGTSTYDGMSLAFAIVEYIASNIKAKTLVSTHYHELTSLESRFDNIKNYC 757 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 + V D+ E I FL K++ G AD SYGI V LA +P V+ RA IL E + + Sbjct: 758 MLVDDTTE-IKFLKKIVEGRADKSYGIHVAMLADIPYEVLERANVILSRLETKEKKSVSN 816 Query: 850 MRLYYPEIQTKESKNNLSKNDKL-FVEKIKCLNLDEMSPLTALKTLYAVK 898 + P+ Q S + SK + L V+KIK +NLDE S AL+ LY +K Sbjct: 817 YKKNSPQEQV--SLEDFSKENNLRIVQKIKDINLDEYSAREALELLYEIK 864 >gi|170288906|ref|YP_001739144.1| DNA mismatch repair protein MutS [Thermotoga sp. RQ2] gi|238688840|sp|B1LAW3|MUTS_THESQ RecName: Full=DNA mismatch repair protein mutS gi|170176409|gb|ACB09461.1| DNA mismatch repair protein MutS [Thermotoga sp. RQ2] Length = 793 Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust. Identities = 295/835 (35%), Positives = 458/835 (54%), Gaps = 62/835 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M QY+ IK DS++ +R+GDFYE FF+DA + S+ L I LT+R +D PM G Sbjct: 4 TPLMEQYLRIKEQYKDSILLFRLGDFYEAFFEDAKIVSKVLNIVLTRR-----QDAPMAG 58 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H N Y++KL++ G+++AIC+Q+E P ++KK L+RR V R+VTPG++ ED+ L Sbjct: 59 IPYHALNTYLKKLVEAGYKVAICDQMEEPSKSKK-----LIRREVTRVVTPGSIVEDEFL 113 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMR-IDPREIIFSEKEL 204 S T+ NY+ V+ + + + D+STG + S+ ++ D+++ +I+ SE Sbjct: 114 SETN-NYMAVVSEEKGRYCTVFCDVSTGEVLVHESSDEQETLDLLKNYSISQIVCSEHLK 172 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADY------YNITTVDTFGSFSQVEKT 258 S SL E V + SISE +D YN+ + F S + Sbjct: 173 S-----SLRERFPGV--------YTESISEWYFSDLEEVEKAYNLKDIHHF-ELSPLALK 218 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA I Y+K T + + P + + +DSA NL ++ G R ++L + Sbjct: 219 TLAALIKYVKYTMITEDLNLKPPLLISQRDYMILDSATVENLSLI---PGDRGKNLFDVL 275 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 + + T G RL + I PL D +I RL+++ + + + + ++ L + DV R + Sbjct: 276 NNTETPMGARLLKKWILHPLVDRKQIEERLEAVERLVNDRVSLEEMRNFLSNVRDVERIV 335 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 SR++ R P+D+ +R+ + I LN L N G KL P+ L L Sbjct: 336 SRVEYNRSVPRDLVALRETLEI-IPKLNEILSN------FGVFNKLA-FPEELVDLLRRA 387 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + DD +G ++ G LDE R L + ++ + + K E T I+ L++ +N Sbjct: 388 IEDDPLGSPGEGKVIKRGFSPELDEYRDLLEHAEERLKEFEEKERERTGIQKLRVGYNQV 447 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IEVT ++ + D E K QT+ N RF T EL + E +I A +E Sbjct: 448 FGYYIEVTKANLDKIPDDYERK------QTLVNSERFITPELKEFETKIMAAKERIEEME 501 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 E F+ + + + E L S+ +A +D+ LA A NY +P+ + +K GR Sbjct: 502 KELFKSVCEEVKKHKEVLLKLSEDLAKMDVLSTLAYDAILYNYTKPVF-SEDRLEIKGGR 560 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ ++ F+ ND + N + ++TGPNM GKSTF+RQ LI +MAQ Sbjct: 561 HPVVERF-----TQNFVENDIYMD-----NEKRFVVITGPNMSGKSTFIRQVGLISLMAQ 610 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA A + + D++F+R+G+ D+LA GRSTF+VEM E A IL ++T +S V+LDE+ Sbjct: 611 IGSFVPAQKAILPVFDRIFTRMGARDDLAGGRSTFLVEMNEMALILLKSTEKSLVLLDEV 670 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DG+SIAWA E L + C+ L ATHF ELT+L K + N T+ V + + Sbjct: 671 GRGTSTQDGVSIAWAISEELIKRG-CKVLFATHFTELTELEKHFPQVQNKTILVKEEGKN 729 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL-KTFEKLYHHNQKDMRL 852 +IF HKV+ G+AD SYGI+V K+AG+P+ VI+RAY+IL + F+ N K R Sbjct: 730 VIFTHKVVDGVADRSYGIEVAKIAGIPDRVINRAYEILERNFKNHTKKNGKSNRF 784 >gi|33862352|ref|NP_893912.1| DNA mismatch repair protein MutS [Prochlorococcus marinus str. MIT 9313] gi|44888176|sp|Q7V978|MUTS_PROMM RecName: Full=DNA mismatch repair protein mutS gi|33640465|emb|CAE20254.1| putative DNA mismatch repair protein [Prochlorococcus marinus str. MIT 9313] Length = 927 Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust. Identities = 296/843 (35%), Positives = 471/843 (55%), Gaps = 58/843 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TPM+R Y+E+K+ +P+ ++ YR+GDF+E FF+DA+ SR L +TLT + GK +G+ +PM Sbjct: 96 TPMLRHYVELKAKHPERILLYRLGDFFECFFEDAIQLSRLLELTLTGKEGGKGIGR-VPM 154 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H A Y +LI+ G +AIC+Q+E+ +G +L++R++ R++TPGT+ + Sbjct: 155 AGVPHHAAERYCAELIRHGLSVAICDQLET---TASKG--ALLKRDITRVLTPGTVLAEG 209 Query: 144 LLSPTDSNYLMAVARIRTE------WAIAWIDISTGIFKIST-SNHDRLISDIMRIDPRE 196 +L+ +N+L AV + W +A D+STG F I+ L + +++ E Sbjct: 210 MLTARRNNWLAAVVVEPAQGNQPFCWGLANADVSTGEFLITQREGSAELHQHLAQLEASE 269 Query: 197 IIFSEK--ELSHAEY--KSLF-ETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS 251 +I ++K E S E+ + LF T+ +QP +E + ++Y ++T+D G Sbjct: 270 LIMAQKIGESSRPEWCPEQLFLTTMATTPFSQPE-------AERTLLNHYRLSTLDGLG- 321 Query: 252 FSQVEKT--AAAAAISYIKKTQMVNKPT--------IGYPEREDIQSTLFIDSAARSNLE 301 +V AA ++Y++ TQ + + + +P L +D+ R NLE Sbjct: 322 LQEVPLALRAAGGLLTYLRDTQPLAENVDEGIAPMPLEHPLTVFAGDALVLDAQTRRNLE 381 Query: 302 ILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL 360 + T G + SLL +D ++T G R I +PL DS I R +N ++ L Sbjct: 382 LTSTQRDGQFQGSLLWAVDRTLTAMGARCLRRWIEAPLLDSKAIRARQAVVNHLVETRSL 441 Query: 361 INPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDL---PEEL 417 + +++ L+ D+ R R G +++ I DGI + L L N L P L Sbjct: 442 RHSLRRFLRPMGDLERLAGRAGAGHAGARELVAIADGIER-LPRLAEQLHNALSSAPHWL 500 Query: 418 RGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIAS 477 + K LP+ L ++ L ++ P +GG + D D LD R+ D +A Sbjct: 501 DNLLTLDKSLPK-LAASIREQLINNPPLSLSEGGLMHDNVDPLLDGLRNQLDDQDTWLAG 559 Query: 478 LQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTT 537 +++ + + NL+++++ GYF+ V+ + AS++ D +I RQT++N RF T Sbjct: 560 QEIQERKLSGNPNLRLQYHRTFGYFLAVSKAKASMVP------DHWIRRQTLANEERFIT 613 Query: 538 LELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAK 597 +L E +I A E E F L + +Q+ S+ A++ +A +D + LA +A Sbjct: 614 PDLKTREGQIFQLRARACQREYELFCQLREQVGKQATSIRKAARAVAGLDALVGLAEVAA 673 Query: 598 EQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTG 657 +YC P ID+S +K RHP+VE+ L ++S FIAND +L D L +LTG Sbjct: 674 TGDYCCPEIDDSRELQLKTCRHPVVEQLLVERS---FIANDVELGKDID-----LVVLTG 725 Query: 658 PNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEM 717 PN GKS +LRQ LI ++AQ+GS+VPA A +GI D++F+RVG+ D+LA+G+STFMVEM Sbjct: 726 PNASGKSCYLRQIGLIQLLAQVGSWVPAKQARVGIADRIFTRVGAVDDLAAGQSTFMVEM 785 Query: 718 IETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTD 777 ETA+IL+ A+++S V+LDEIGRGTAT DGLSIAWA E+L R R + ATH+HEL Sbjct: 786 AETANILHHASDRSLVLLDEIGRGTATFDGLSIAWAVSEHLATDLRSRTVFATHYHELNG 845 Query: 778 LSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILK 837 LS+ L N + V ++ + ++FLH+V G A+ SYGI+ +LAG+PN V+ RA +L Sbjct: 846 LSQELTNVANFQVLVEETGDDLVFLHQVAAGGANRSYGIEAARLAGVPNDVVQRARQVLA 905 Query: 838 TFE 840 + Sbjct: 906 QLQ 908 >gi|309775009|ref|ZP_07670024.1| DNA mismatch repair protein MutS [Erysipelotrichaceae bacterium 3_1_53] gi|308917227|gb|EFP62952.1| DNA mismatch repair protein MutS [Erysipelotrichaceae bacterium 3_1_53] Length = 843 Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust. Identities = 288/882 (32%), Positives = 485/882 (54%), Gaps = 57/882 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM Y+E+K + D+++FYR+GDFYE+FF+DA AS L + LT R + + +PMCG Sbjct: 8 TPMMNHYLELKKQHEDAIIFYRLGDFYEMFFEDARTASSELDLVLTGRNAGVEERVPMCG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H A YIQ+LI+ G+++AI EQ+E P AK LV+R+V+++VTPGT+ D++ Sbjct: 68 IPHHAAKGYIQRLIQKGYKVAIVEQLEDPALAK-----GLVKRDVIKIVTPGTIM-DEVS 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRI----DPREIIFSE 201 + Y+ ++ + A+ +++TG + D+ + I ++ + REI+ E Sbjct: 122 DEKATVYIASLHDYQFGLAVILCEMTTGELRAQLI--DKHVMAIQKVLLGNNVREIVVQE 179 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 K + + E + + V+ N D ++ E +Y ++ G +TA Sbjct: 180 K--FDKKIIRMIEEMETITVSYHN---DSNLKE----EYRHLLN----GIEDDRVETAFG 226 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 +Y+ +TQ + + E L +D + + NLE+ ++ S SR Q+L +D Sbjct: 227 VLTNYLDETQKRSMAHLNSVEMVYENEFLQMDFSTKQNLELTSSIRSNSRSQTLWSFLDK 286 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + G RL + I PL D+ IN RLD+I + N I + +++ L D+ R +R Sbjct: 287 CRSSMGSRLLKKWIEYPLVDTGMINRRLDAIEYLNDNFITKDELREHLGFVYDMERLSAR 346 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP-QSLEKTLSSML 439 + G P+D+ + + I LF ++ E K P + L + + Sbjct: 347 VAYGSANPRDVLRLVKTLEHTPQIFELF------KDCSAYSEFQKVDPCRELYDMIDGAI 400 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 D+ P +DGG +G + LD R + K I L+ K E T +K+LKI +N Sbjct: 401 VDNPPLTMKDGGVFVEGYNEELDHVREIGKNGKNWILELENKERERTGVKSLKIGYNRVF 460 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IEVT ++ S +K++ ++ +QT++N R+ T EL + E+ I +A ++ +E Sbjct: 461 GYYIEVTKTNVSSIKEEF----GYVRKQTLTNAERYVTQELKEKEDAIVHAQERSIRLEA 516 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F+ L N I L + S ++ ID ALA ++ E Y RP + + + RH Sbjct: 517 ELFQNLLNQIKVYLPKLHDLSNALSTIDALYALAEVSSENGYTRPQFHTGHSLSMSEARH 576 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 PI+++ +K +K +++ND + ND + ++TGPNMGGKST++RQ L+VIMAQ+ Sbjct: 577 PILDRMMK---TKRYVSNDLHMDEHND-----ILMITGPNMGGKSTYMRQTVLLVIMAQI 628 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 G +VPA A + + D++F+R+G++D++ SG+STFMVEMIE + L AT S ++ DEIG Sbjct: 629 GCFVPAKKAEMPVFDQIFTRIGASDDIMSGQSTFMVEMIEANNALQNATANSLILFDEIG 688 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGT+T DG+++A A IEY+ + + L +TH+HELT++++ N + V + ++ + Sbjct: 689 RGTSTYDGMALAQAMIEYIMRNIKAKTLFSTHYHELTEMAEQNPSIRNVHVDVHEEDDKV 748 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM--RLYYPEI 857 FL++VI G AD SYGI V +LA LP +V+ RA IL E Q +M + P + Sbjct: 749 TFLYRVIDGKADKSYGINVARLAHLPTSVLDRAKQILDNLEL-----QPNMVGEVQAPVV 803 Query: 858 QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 KE+ + +E++K +++++M+P+ A++ LY +K Sbjct: 804 IEKENPQHTQ-----IIEQVKQVDVNKMTPMEAMQLLYELKG 840 >gi|322392638|ref|ZP_08066098.1| DNA mismatch repair protein HexA [Streptococcus peroris ATCC 700780] gi|321144630|gb|EFX40031.1| DNA mismatch repair protein HexA [Streptococcus peroris ATCC 700780] Length = 844 Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust. Identities = 291/887 (32%), Positives = 479/887 (54%), Gaps = 66/887 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEISLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI L++ G+++AI EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPYHSAQQYIDALVERGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSSK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKEL 204 + +N+L+A+ +++ +A++D+ TG F ++ S+ + +I + RE++ +L Sbjct: 121 PDSQNNFLVAIDCDGSQYGLAYMDLVTGDFYVTGISDFSLVCGEIRNLKAREVVVG-YDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S AE + L + V + ++ I E ++ +D+ + +EK A+ + Sbjct: 180 SEAEEQILSRQMNLV------LSYEQEIGE-------DVHLLDS--GLAPIEKAASGKLL 224 Query: 265 SYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 Y+ +TQM KP I Y +I+ L +D A +++L+++ SG ++ SL +D Sbjct: 225 QYVHRTQMRELNHLKPVIRY----EIKDFLQMDYATKTSLDLVENARSGKKQGSLFWLLD 280 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL I PL D +I R + + F+ + + + LK D+ R S Sbjct: 281 ETKTAMGMRLLRSWIQRPLIDKDRILERQEVVQVFLDYFFERSDLTESLKGVYDIERLAS 340 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G+ PKD+ + + S I + + P L +E+L +P+ LE +S+ + Sbjct: 341 RVSFGKSNPKDLLQLATTLGSVPRIRAILEGIEQPA-LAYLIEQLDAIPE-LESLISAAI 398 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + + P +GG +R G D +LD+ R + + IA ++ K E + I LKI +N Sbjct: 399 APEAPHVITEGGIIRTGFDETLDKYRRVLREGTGWIAEIEAKERENSGIHTLKIDYNKKD 458 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+ VT+S + F + T+ N RF T EL +E + A + +E Sbjct: 459 GYYFHVTNSQLGNVPA------HFFRKATLKNSERFGTEELAHIEGEMLEAREKSANLEY 512 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F + + + + L +Q IA +D+ LA++A+ Q+ RP + ++ GRH Sbjct: 513 EIFMRIREEVGKYIQRLQPLAQGIATVDVLQGLAVVAENQHLIRPEFGQDSKIDIQKGRH 572 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 +VEK + Q+ +I N + + L+TGPNM GKST++RQ A+ +MAQM Sbjct: 573 AVVEKVMGAQT---YIPNSIQMD-----EETSIQLITGPNMSGKSTYMRQLAITAVMAQM 624 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPA A++ I D +F+R+G+AD+L SG+STFMVEM+E + ++ AT S ++ DE+G Sbjct: 625 GSYVPAESAYLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELG 684 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A + IEY+HE + L ATH+HELT L SL+ N + + N + Sbjct: 685 RGTATYDGMALAQSIIEYIHEHIGAKTLFATHYHELTSLEASLEHLVNVHVATLEQNGQV 744 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 FLHK+ PG AD SYGI V K+AGLP ++ RA IL E N + Sbjct: 745 TFLHKIEPGPADKSYGIHVAKIAGLPADLLKRADAILTQLESQGQENPISIN-------- 796 Query: 860 KESKNNLSKNDKLFVEK--------IKCLNLDEMSPLTALKTLYAVK 898 +N +++ LF EK + +++ M+P+ A+ L +K Sbjct: 797 --QRNVVNEQMSLFDEKEENPILAELAEVDVYNMTPMQAMNLLLELK 841 >gi|257417288|ref|ZP_05594282.1| MutS 1 protein [Enterococcus faecalis AR01/DG] gi|257159116|gb|EEU89076.1| MutS 1 protein [Enterococcus faecalis ARO1/DG] Length = 858 Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust. Identities = 292/897 (32%), Positives = 484/897 (53%), Gaps = 71/897 (7%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM QY+ IK+ D+ +FYR+GDFYELF++DA+ A++ L +TLT R ++ IPMC Sbjct: 7 NTPMMEQYLSIKAQYKDAFLFYRLGDFYELFYEDAINAAQILELTLTSRNRNADDPIPMC 66 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H A YI LI+ G+++AICEQ+E P + K +V+R VV+LVTPGT+ + Sbjct: 67 GVPYHAAQGYIDTLIEQGYKVAICEQVEDP-----KTTKGMVKREVVQLVTPGTVMNSKG 121 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 L D+NYL AV ++ A++D+STG K + ++ + ++++ + +E++ Sbjct: 122 LEAKDNNYLTAVLTDGNQFGFAYVDLSTGELKTAVLADEEGVLNEASALQTKEMVLG--- 178 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + E+L + N+ F + A++ +T + +E Sbjct: 179 ------SGIPESLKENLSLRLNIIFSTQETVEENAEFSFLTN----ELINPLEIEITGKL 228 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 +SY+ TQ + I L +D ++ NLE+ +++ +G ++ +LL +D + Sbjct: 229 LSYLSVTQKRSLSHIQKAVEYQPDHFLKMDHYSKFNLELSQSIRTGQKKGTLLWLLDETK 288 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGRL + + PL +I R + + + +Q L + D+ R R+ Sbjct: 289 TAMGGRLLRQWLDRPLIQERQIKARQEMVQSLLNAYFERLDLQAALTNVYDLERLAGRVA 348 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLK------NDLPEELRGAVEKLKKLPQSLEKTLS 436 G +D+ +R + I L + +DL +L VE L L ++ Sbjct: 349 FGSVNGRDLIQLRTSLEQVPTIRQLIVGINQGEWDDLLVDL-NPVEDLVAL-------IA 400 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + ++++ P +G ++DG + LDE R K+ +A L+ K +ET IKNLKI +N Sbjct: 401 TAINEEAPLQITEGNVIKDGYNDQLDEYRDAMRNGKQWLAELEAKERQETGIKNLKIGYN 460 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GYFIE+T S+ + L++ ++ +QT++N RF T EL +LE I A ++ Sbjct: 461 RVFGYFIEITKSNLANLEEG-----KYERKQTLANAERFITPELKELERLILEAEEKSVE 515 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII-DNSTNFIVK 615 +E + F + + + L ++ I+ +D+ + A +++ Y RP + N+ N + Sbjct: 516 LEYQLFLAVREQVKTNIDRLQTLAKTISAVDVLQSFATISERYQYVRPTLRSNTKNLAIV 575 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 +GRHP+VEK L Q +I N ++ D + L+TGPNM GKST++RQ AL V+ Sbjct: 576 EGRHPVVEKVLGHQE---YIPNSIRMNPETD-----ILLITGPNMSGKSTYMRQLALTVV 627 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+G +VPA A + I D++F+R+G++D+L +G+STFMVEM+E L AT S ++ Sbjct: 628 MAQIGCFVPAESAEMPIFDQIFTRIGASDDLIAGQSTFMVEMMEANQALRHATPNSLILF 687 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGTAT DG+++A A IEY+H + + L +TH+HELT L ++LK N + + Sbjct: 688 DELGRGTATYDGMALAQAIIEYIHREVQAKTLFSTHYHELTVLDETLKGLKNIHVGAVEK 747 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--------------K 841 + ++FLHK++ G AD SYGI V K+AGLP+ ++ RA IL E Sbjct: 748 DGEVVFLHKMMEGPADKSYGIHVAKIAGLPSPLLERAATILSALEAEETTIPSSVHHEEV 807 Query: 842 LYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 H + + + E+ T+E LS ++ +K +NL EM+PL AL L+ ++ Sbjct: 808 SEVHEETEQLSLFKEVSTEE----LS-----VIDTLKKMNLLEMTPLDALNMLHQLQ 855 >gi|288925895|ref|ZP_06419825.1| DNA mismatch repair protein MutS [Prevotella buccae D17] gi|288337319|gb|EFC75675.1| DNA mismatch repair protein MutS [Prevotella buccae D17] Length = 889 Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust. Identities = 280/832 (33%), Positives = 457/832 (54%), Gaps = 30/832 (3%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 N K TPMMRQ+ ++KS +P++L+ +R GDFYE + +DA+ A+R LGITLT+R Sbjct: 4 NEKGLTPMMRQFFDMKSKHPEALLLFRCGDFYETYCEDAVEAARVLGITLTRRNNGGSTA 63 Query: 81 I-PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKK--RGNKSL------VRRNVV 131 + M G P H + Y+ KLI+ G R+AIC+Q+E P + ++ +G K L V+R + Sbjct: 64 VTEMAGFPHHALDTYLPKLIRAGKRVAICDQLEDPKKKREQIKGKKGLSEMDKMVKRGIT 123 Query: 132 RLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMR 191 LVTPG D +L+ ++N+L AV + ++++DISTG F +D + + Sbjct: 124 ELVTPGVAMGDNVLNYKENNFLAAVHFGKGACGVSFLDISTGEFLTGEGTYDYVEKLLGN 183 Query: 192 IDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS 251 P+E+++ +++ F T VF D S + ++ ++ ++ FG Sbjct: 184 FQPKEVLYDRAR--KQDFERYFGTRFCTFELDDWVFTDQS-ARQKLLKHFGTKSLKGFGV 240 Query: 252 FSQVEKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR 310 A+ AI Y++ TQ + I R + + +D +LE+L+ + Sbjct: 241 DHLKNGVIASGAIMQYLELTQHTHIGHITALARIEEDKFVRLDKFTSRSLELLQPMQ-ED 299 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 SLL ID ++T G RL + PL D IN RLD +++F + P + + Sbjct: 300 GLSLLDVIDRTVTPMGSRLLRRWMVFPLKDVRPINERLDIVDYFFKKPDFRVCVDEEFHR 359 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS 430 D+ R +S++ +GR P+++ +++ + + I + + + E L+ E+L L +S Sbjct: 360 MGDLERIISKVAVGRVSPREVVQLKNAL-TAIRPVKMACLSAGNEALKRVGEQLS-LCES 417 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L + + D P G + D LDE RS+ K + +Q + E+T I + Sbjct: 418 LRDRIDKEIQPDPPQLLNKGDVIADNYSPELDELRSISRHGKDYLLEIQQREIEKTGITS 477 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ NN GY++EV ++ KD + + ++ +QT++ R+ T EL + E +I A Sbjct: 478 LKVGFNNVFGYYLEVRNTF-----KD-KVPEEWVRKQTLAQAERYITQELKEYEEKILGA 531 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 +++E + F L A+ E + + ++A +D ++ A ++E Y RP ID S Sbjct: 532 DEKIIMLETKLFNELILAMQEFIPQIQIDANLVAHLDCLLSFAKTSEEHRYVRPTIDESE 591 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 +K GRH ++E L + ++ ND L D ++ ++TGPNM GKS LRQ Sbjct: 592 VLDIKQGRHAVIETQLP--IGEQYVPNDVYL----DTVKQQVMMITGPNMAGKSALLRQT 645 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALIV++AQ+G +VPA A IG+VDK+F+RVG++DN++ G STFMVEM E ++ILN + + Sbjct: 646 ALIVLLAQVGCFVPAESARIGLVDKIFTRVGASDNISLGESTFMVEMTEASNILNNVSGR 705 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNA 788 S V+ DE+GRGT+T DG+SIAWA +EYLHE R R L ATH+HEL ++ K+ R N Sbjct: 706 SLVLFDELGRGTSTYDGISIAWAIVEYLHEHPKARARTLFATHYHELNEMEKNFPRIKNY 765 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + V + N +IFL K+ G ++HS+GI V ++AG+P +++ RA ILK E Sbjct: 766 NVSVKELNGKVIFLRKLERGGSEHSFGIHVAEIAGMPRSIVKRANVILKQLE 817 >gi|222099881|ref|YP_002534449.1| DNA mismatch repair protein mutS [Thermotoga neapolitana DSM 4359] gi|254766645|sp|B9K800|MUTS_THENN RecName: Full=DNA mismatch repair protein mutS gi|221572271|gb|ACM23083.1| DNA mismatch repair protein mutS [Thermotoga neapolitana DSM 4359] Length = 801 Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust. Identities = 292/820 (35%), Positives = 455/820 (55%), Gaps = 56/820 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M QY++IK DS++ +R+GDFYE FF+DA S+ L I LTKR +D PM G Sbjct: 4 TPLMEQYLKIKEQYKDSILLFRLGDFYEAFFEDAKTVSKVLNIVLTKR-----QDAPMAG 58 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H N Y++KL++ G+++AIC+Q+E P ++KK L+RR V R+VTPG + ED+ L Sbjct: 59 IPYHALNTYLKKLVEAGYKVAICDQMEEPSKSKK-----LIRREVTRVVTPGAIVEDEFL 113 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMR-IDPREIIFSEKEL 204 S T+ NY++ + R + ++ + D+STG I S ++ + D+M+ EI+ E Sbjct: 114 SETN-NYMVVLVREKEKYCAVFCDVSTGEVLIHESIDEQEVLDLMKAYSVSEIVCPEGLE 172 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E L V + + ++ S E + Y I + F S + + +A I Sbjct: 173 SEVR-----EKLPGVYIEVIDEWY-FSEPEEEVKRIYGIEDIHHF-ELSSLAMKSLSALI 225 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 YIK T + K + P ++ + +DSA NL ++ G + ++L ++++ T Sbjct: 226 KYIKYTMISEKLNLKPPVTISRKNFMILDSATVENLSLI---PGEKGKNLFDVLNHTETP 282 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 G RL + I PLTD +I RL+++ ++ + + I+ +L DV R +SR++ Sbjct: 283 MGARLLKKWILHPLTDRQQIEDRLNAVEKLKEDRLKLEQIRNLLSRVRDVERIVSRVEYN 342 Query: 385 RGEPKDIAVIRDGIRSGINILNLFLKN-DLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 R P+D+ +R+ + S + LN L N D E+L P SL L + DD Sbjct: 343 RAIPRDLVALRETL-SVVPELNEELSNFDFFEKL--------NFPDSLFDLLCKAIEDDP 393 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 +G ++ G LDE R L + S+ + + + E+T I+ LK+ +N GY+I Sbjct: 394 AGSPGEGKVIKRGFSPELDEYRDLLEHSEEKLKEFEEREREKTGIQKLKVGYNQVFGYYI 453 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EVT ++ + +D E K QT+ N RFTT EL + E +I A +E E F Sbjct: 454 EVTKANLDKVPEDYERK------QTLVNSERFTTPELKEFETKIMAAKERIEELEKELFR 507 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 + + + E+L S+ +A ID+ LA A NY RP I+ GRHP+VE Sbjct: 508 NVCEEVKKHKETLLEISEELARIDVLATLAYDAILYNYTRPTFSEDRMEII-GGRHPVVE 566 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 + ++ F+ ND + + + ++TGPNM GKSTF+RQ LI +MAQ+GS+V Sbjct: 567 RF-----TRDFVENDLYMD-----DEKRFTVITGPNMSGKSTFIRQVGLISLMAQIGSFV 616 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA A + + D++F+R+G+ D+LA GRSTF+VEM E A IL +AT +S V+LDE+GRGT Sbjct: 617 PAKKAVLPVFDRIFTRMGARDDLAGGRSTFLVEMNEMALILLKATKKSLVLLDEVGRGTG 676 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DG+SIAWA E L + C+ L ATHF ELT+L S + N T+ V + ++F H Sbjct: 677 TQDGISIAWAISEELI-SRGCKVLFATHFIELTNLENSFPQVQNKTILVKEEGSNVVFTH 735 Query: 804 KVIPGI------ADHSYGIQVGKLAGLPNTVISRAYDILK 837 +V+ G+ AD SYGI+V ++AG+P VI RA++I++ Sbjct: 736 RVVDGVADRSYGADRSYGIEVARIAGIPENVIRRAFEIME 775 >gi|307288398|ref|ZP_07568389.1| DNA mismatch repair protein MutS [Enterococcus faecalis TX0109] gi|306500630|gb|EFM69956.1| DNA mismatch repair protein MutS [Enterococcus faecalis TX0109] gi|315164365|gb|EFU08382.1| DNA mismatch repair protein MutS [Enterococcus faecalis TX1302] Length = 858 Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust. Identities = 292/897 (32%), Positives = 484/897 (53%), Gaps = 71/897 (7%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM QY+ IK+ D+ +FYR+GDFYELF++DA+ A++ L +TLT R ++ IPMC Sbjct: 7 NTPMMEQYLSIKAQYKDAFLFYRLGDFYELFYEDAINAAQILELTLTSRNRNADDPIPMC 66 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H A YI LI+ G+++AICEQ+E P + K +V+R VV+LVTPGT+ + Sbjct: 67 GVPYHAAQGYIDTLIEQGYKVAICEQVEDP-----KTTKGMVKREVVQLVTPGTVMNSKG 121 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 L D+NYL AV ++ A++D+STG K + ++ + ++++ + +E++ Sbjct: 122 LEAKDNNYLTAVLTDGNQFGFAYVDLSTGELKTAVLADEEGVLNEASALQTKEMVLG--- 178 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + E+L + N+ F + A++ +T + +E Sbjct: 179 ------SGIPESLKENLSLRLNIIFSTQETVEENAEFSFLTN----ELINPLEIEITGKL 228 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 +SY+ TQ + I L +D ++ NLE+ +++ +G ++ +LL +D + Sbjct: 229 LSYLSVTQKRSLSHIQKAVEYQPDHFLKMDHYSKFNLELSQSIRTGQKKGTLLWLLDETK 288 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGRL + + PL +I R + + + +Q L + D+ R R+ Sbjct: 289 TAMGGRLLKQWLDRPLIQERQIKARQEMVQSLLNAYFERLDLQAALTNVYDLERLAGRVA 348 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLK------NDLPEELRGAVEKLKKLPQSLEKTLS 436 G +D+ +R + I L + +DL +L VE L L ++ Sbjct: 349 FGSVNGRDLIQLRTSLEQVPTIRQLIVGINQGEWDDLLVDL-NPVEDLVVL-------IA 400 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + ++++ P +G ++DG + LDE R K+ +A L+ K +ET IKNLKI +N Sbjct: 401 TAINEEAPLQITEGNVIKDGYNDQLDEYRDAMRNGKQWLAELEAKERQETGIKNLKIGYN 460 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GYFIE+T S+ + L++ ++ +QT++N RF T EL +LE I A ++ Sbjct: 461 RVFGYFIEITKSNLANLEEG-----KYERKQTLANAERFITPELKELERLILEAEEKSVE 515 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII-DNSTNFIVK 615 +E + F + + + L ++ I+ +D+ + A +++ Y RP + N+ N + Sbjct: 516 LEYQLFLAVREQVKTNIDRLQTLAKTISAVDVLQSFATISERYQYVRPTLRSNTKNLAIV 575 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 +GRHP+VEK L Q +I N ++ D + L+TGPNM GKST++RQ AL V+ Sbjct: 576 EGRHPVVEKVLGHQE---YIPNSIRMNPETD-----ILLITGPNMSGKSTYMRQLALTVV 627 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+G +VPA A + I D++F+R+G++D+L +G+STFMVEM+E L AT S ++ Sbjct: 628 MAQIGCFVPAESAEMPIFDQIFTRIGASDDLIAGQSTFMVEMMEANQALRHATPNSLILF 687 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGTAT DG+++A A IEY+H + + L +TH+HELT L ++LK N + + Sbjct: 688 DELGRGTATYDGMALAQAIIEYIHREVQAKTLFSTHYHELTVLDETLKGLKNIHVGAVEK 747 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--------------K 841 + ++FLHK++ G AD SYGI V K+AGLP+ ++ RA IL E Sbjct: 748 DGEVVFLHKMMEGPADKSYGIHVAKIAGLPSPLLERAATILSALEAEETTIPSSVHHEEV 807 Query: 842 LYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 H + + + E+ T+E LS ++ +K +NL EM+PL AL L+ ++ Sbjct: 808 SEVHEETEQLSLFKEVSTEE----LS-----VIDTLKKMNLLEMTPLDALNMLHQLQ 855 >gi|259046523|ref|ZP_05736924.1| DNA mismatch repair protein HexA [Granulicatella adiacens ATCC 49175] gi|259036688|gb|EEW37943.1| DNA mismatch repair protein HexA [Granulicatella adiacens ATCC 49175] Length = 865 Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust. Identities = 301/883 (34%), Positives = 473/883 (53%), Gaps = 61/883 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY IK PD L+FYR+GDFYELF+DDA+ A+R L ITLT R K+ IPMCG Sbjct: 22 TPMMQQYFSIKEKYPDCLLFYRLGDFYELFYDDAIEAARLLEITLTSRNKNAEDPIPMCG 81 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A YI+ LI++G ++AICEQ+E P + K +V+R+VV+++TPGT TE Q Sbjct: 82 VPHHAAKEYIKTLIELGKKVAICEQLEDP-----KLTKGMVKRDVVQVLTPGTYTEYQ-- 134 Query: 146 SPTDSNYLMAV-ARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 + ++YL+++ + +A++++D+STG K++ N + + S+ + RE++ + + Sbjct: 135 AQNQNHYLVSILPLVGKRYALSYVDVSTGELKVTQLENLEEVRSECSSLLCREVVLVDSD 194 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 ++ E + LF ++ I S I + I D S++E A+ Sbjct: 195 VTE-ELRHLFTSM--------------QILISTI-EKDEINAEDCTDLVSELEDEASVRC 238 Query: 264 I----SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTI 318 + SY+K TQ + + + + L ++ + NLE+ T+ S + SL + Sbjct: 239 VQNLLSYLKLTQKRSFSHLQKAQAYQSEFYLSMNYETKRNLELTMTIRSNQKHGSLFWFL 298 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D + T GGRL + + PL I R + Q+ + LK D+ R + Sbjct: 299 DETQTAMGGRLLKQWLEKPLVLEGAIQKRHALVETLNQHYFERTDFIETLKRVYDLERIV 358 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 ++ G +D+ ++ + S + I + + E E L +P+ L + Sbjct: 359 GKVSFGTANARDLLQLKQTL-SQVPIFKSIVDSLDSEAWSALGENLFDIPE-LYDLIDRA 416 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + +D P DG +R G +A+LD R K IASLQ + E+T I +LKI N Sbjct: 417 IDEDAPLTISDGNIIRSGYNATLDTYRDTMKHGKEWIASLQQQEREQTGISSLKISFNKV 476 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IEVT S+ S L R+ +QT++N RF T EL + E I A + +E Sbjct: 477 FGYYIEVTKSNLSKL-----DSSRYERKQTLANAERFITPELKEKETLILEAEEKSSALE 531 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID-NSTNFIVKDG 617 + F + + + L ++ +A ID+ A +++++ + +P I + ++DG Sbjct: 532 YQLFVEVREQVKHYTAELQQLAKTVATIDVLQAFSVVSERYHLVKPTISMKNRRLWIEDG 591 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VEK + Q + ++ N +S P++ + L+TGPNM GKST++RQ AL VI+A Sbjct: 592 RHPVVEKVMGQST---YVPNSISMS-PDEH----ILLITGPNMSGKSTYMRQLALCVILA 643 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+G +VPA A I + K+F+R+G+AD+L SG+STFMVEM+ET L A S ++ DE Sbjct: 644 QIGCFVPAKSATIPVFTKIFTRIGAADDLISGQSTFMVEMMETNHALRNADETSLLLFDE 703 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGTAT DG+++A A I Y+HE + L +TH+HELT LS+ N + + N Sbjct: 704 IGRGTATYDGMALAEAIITYIHEHLSAKVLFSTHYHELTRLSEKYADLRNVHVGAVEENG 763 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ-----KDMRL 852 ++FLHKV+ G AD SYGI V KLAGLP ++ A IL E N+ + + L Sbjct: 764 EVVFLHKVLEGPADKSYGIHVAKLAGLPTELLKNASTILNHLEAKGAANENSTFVEQVSL 823 Query: 853 YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 + E +T +V ++K LNL M+P+ A+ LY Sbjct: 824 FEEEAETMPE----------WVRELKGLNLMSMTPMDAMNILY 856 >gi|332071344|gb|EGI81838.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae GA41301] Length = 844 Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust. Identities = 291/883 (32%), Positives = 477/883 (54%), Gaps = 58/883 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEISLTSRNKNADNPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI+ G+++AI EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPYHSAQQYIDVLIEQGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSSK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEKEL 204 + +N+L+++ ++ +A++D+ TG F ++ L+ +I + RE++ +L Sbjct: 121 PDSQNNFLVSIDCEGNQFGLAYMDLVTGDFYVTGLLDFTLVCGEIRNLKAREVVLG-YDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E + L + V + F D + + R+A VE+TA++ + Sbjct: 180 SEEEEQILSRQMNLVLSYEKESFEDLHLLDLRLA---------------TVEQTASSKLL 224 Query: 265 SYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 Y+ +TQM KP I Y +I+ L +D A +++L+++ SG ++ SL +D Sbjct: 225 QYVHRTQMRELNHLKPVIRY----EIKDFLQMDYATKASLDLVENARSGKKQGSLFWLLD 280 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL I PL D +I R + + F+ + + + LK D+ R S Sbjct: 281 ETKTAMGMRLLRSWIHRPLIDKERIVQRQEVVQVFLDHFFERSDLTDSLKGVYDIERLAS 340 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G+ PKD+ + + S I + + P L + +L +P+ LE +S+ + Sbjct: 341 RVSFGKTNPKDLLQLATTLSSVPRIRAILEGMEQPT-LAYLIAQLDAIPE-LESLISAAI 398 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + + P DGG +R G D +LD+ R + + IA ++ K E + I LKI +N Sbjct: 399 APEAPHVITDGGIIRTGFDETLDKYRCVLREGTSWIAEIEAKERENSGISTLKIDYNKKD 458 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+ VT+S + F + T+ N RF T EL +E + A + +E Sbjct: 459 GYYFHVTNSQLGNVPA------HFFRKATLKNSERFGTEELARIEGDMLEAREKSANLEY 512 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F + + + + L +Q IA +D+ +LA++A+ Q+ RP + + ++ GRH Sbjct: 513 EIFMRIREEVGKYIQRLQALAQGIATVDVLQSLAVVAETQHLIRPEFGDDSQIDIRKGRH 572 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 +VEK + Q+ +I N ++ + L+TGPNM GKST++RQ A+ +MAQ+ Sbjct: 573 AVVEKVMGAQT---YIPNTIQMA-----EDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQL 624 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPA AH+ I D +F+R+G+AD+L SG+STFMVEM+E + ++ AT S ++ DE+G Sbjct: 625 GSYVPAESAHLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELG 684 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A + IEY+HE + L ATH+HELT L SL+ N + + + + Sbjct: 685 RGTATYDGMALAQSIIEYIHEHIGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQV 744 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 FLHK+ PG AD SYGI V K+AGLP +++RA IL E + MR QT Sbjct: 745 TFLHKIEPGPADKSYGIHVAKIAGLPADLLARADKILTQLENQGTESPPPMR------QT 798 Query: 860 KESKNNLSKNDKL----FVEKIKCLNLDEMSPLTALKTLYAVK 898 +S D+ + ++ L++ M+P+ + L +K Sbjct: 799 SAVTEQISLFDRAEEHPILAELAKLDVYNMTPMQVMNVLVELK 841 >gi|84623184|ref|YP_450556.1| DNA mismatch repair protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84367124|dbj|BAE68282.1| DNA mismatch repair protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 851 Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust. Identities = 293/885 (33%), Positives = 475/885 (53%), Gaps = 50/885 (5%) Query: 29 MRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPV 88 M+Q+ KS PD L+F+RMGDFYELF+DDA A+R L ITLT+RG G IPM GVPV Sbjct: 1 MKQFFAAKSDYPDLLLFFRMGDFYELFYDDARKAARLLDITLTQRGSSGGAPIPMAGVPV 60 Query: 89 HTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPT 148 H Y+ +L+ +G +AICEQI P AK LV R VVR+VTPGT+T++ LL Sbjct: 61 HAYEGYLARLVALGESVAICEQIGDPALAK-----GLVERKVVRIVTPGTVTDEALLDER 115 Query: 149 DSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEKELSHA 207 LMA++R + + +AW D++ G F ++ + D L ++I R++P E++ +++ Sbjct: 116 RDTLLMAISRSKQGYGLAWADLAGGRFLVNEVDTVDALEAEIARLEPAELLVPDED---- 171 Query: 208 EYKSLFETLGNVAVAQ-PNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAIS- 265 + G + V + P FD ++ ++ + + FG + TAAA A+ Sbjct: 172 HWPEFLR--GRIGVRRRPPWLFDADSGRRQLLAFFKLHDLSGFGIDDKPSATAAAGALLG 229 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y+++TQ P + E + +++A R +LE+ + G +LL +D ++T Sbjct: 230 YVEETQKQRLPHLTSIATEVASEAISMNAATRRHLELDTRVDGDTRNTLLGVLDSTVTPM 289 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 GGRL + PL + R ++ I + +++ ++ D+ R L+R+ + Sbjct: 290 GGRLLRRWLHRPLRLRDVLVQRHHAVGNLIDAGADAD-LREAFRALGDLERILTRVALRS 348 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK------TLSSML 439 P+D + +RDG+ + + D P +L+ L L + L S + Sbjct: 349 ARPRDFSTLRDGLALLPKVRTILAPLDSP--------RLQTLHAELGEHDATAHLLISAV 400 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 ++ P DGG + G DA LDE R L + + + L+ + + I LK+ +N Sbjct: 401 AETPPLKLSDGGVIASGYDAELDELRRLSTNADQFLIDLEQRERASSGIATLKVGYNRVH 460 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IE++ A ++ + RQT++N R+ T EL E+++ +A +L E Sbjct: 461 GYYIEISKGQAE------KAPLHYSRRQTLTNAERYITEELKTFEDKVLSARERSLSREK 514 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 +E L + + + E L + ++ +D+ A A+ ++ +P +D++ ++ GRH Sbjct: 515 LLYEGLLDTLGTELEGLKRCAGALSELDVLAGFAERAQALDWSQPELDSAPCLRIERGRH 574 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE PF ND DL +D+ ++ ++TGPNMGGKST++RQNALIV++A + Sbjct: 575 PVVEAV----RDHPFEPNDLDLH--SDR---RMLVITGPNMGGKSTYMRQNALIVLLAHI 625 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPAS A IG +D++ +R+G+ D+LA G+STFMVEM ET+ IL+ AT QS V++DEIG Sbjct: 626 GSYVPASRAVIGPIDRILTRIGAGDDLARGQSTFMVEMAETSYILHHATPQSLVLMDEIG 685 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK-----SLKRFHNATLQVSD 794 RGT+T DGL++A A +L TNRC L ATH+ ELT L+ N L + Sbjct: 686 RGTSTYDGLALADAVARHLAHTNRCYTLFATHYFELTALADESHDGGASGIANVHLDAVE 745 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 E ++F+H V G A+ S+G+QV LAGLP +++A L E+ + ++ Sbjct: 746 HGERLVFMHAVKDGPANRSFGLQVAALAGLPKAAVTQARRRLVELEQRGGESHS-AQMAP 804 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + + + E ++ L+ DE++P AL+ LY +KA Sbjct: 805 TALDAPQQFGLFTAPSSAAQEALQALDPDELTPKQALEALYRLKA 849 >gi|332360166|gb|EGJ37980.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK1056] Length = 849 Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust. Identities = 283/820 (34%), Positives = 449/820 (54%), Gaps = 46/820 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYPDAFLLFRMGDFYELFYDDAVNAAQILEISLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI L++ G+++AI EQ+E P EAK +V+R VV+++TPGT+ + Sbjct: 67 VPYHSAQQYIDVLVESGYKVAIAEQMEDPKEAK-----GVVKREVVQVITPGTVVDS--- 118 Query: 146 SPTDS--NYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEK 202 S DS N+L+A+ + +A++D+ TG F++++ L+ +I + RE++ Sbjct: 119 SKPDSANNFLVALDYSEGLYGLAYMDLVTGEFQVTSLEDFALVCGEIRNLKAREVVLG-Y 177 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS-FSQVEKTAAA 261 +L AE + V Q N+ S ++ + D V G S +E+ AA Sbjct: 178 DLPEAEEQ--------VLAGQMNLLL--SYVQTALDD------VQLLGEELSPMERQAAG 221 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 + Y+ +TQM + + +I+ L +D A +++L++ SG + SL +D Sbjct: 222 KLLEYVHRTQMRELSHLKKAQHYEIKDFLQMDYATKASLDLTENARSGKKHGSLYWLMDE 281 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGR+ I PL D +I+ R + + F+ + + + + LK D+ R SR Sbjct: 282 TKTAMGGRMLRSWIQRPLIDEARISQRQNVVEVFLDHFFERSDLTESLKGVYDIERLASR 341 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + G+ PKD+ + + + + L+ + L +E L +P+ L +SS +S Sbjct: 342 VSFGKTNPKDLLQLAATL-GNVPQIKAILQGIGSQHLARLIEGLDPIPE-LAGLISSAIS 399 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D P +G +R G D +LD+ R + + IA L++K + I NLKI +N G Sbjct: 400 PDAPHIITEGNIIRTGFDETLDQYRLVLREGTGWIAELEVKERANSGISNLKIDYNKKDG 459 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+ VT+S + F + T+ N RF T EL +E + A + +E E Sbjct: 460 YYFHVTNSQLA------HVPSHFFRKATLKNSERFGTEELARIEGEMLEAREKSANLEYE 513 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F + + + L +Q +A +D+ + A +A++ + RP+ ++ GRH Sbjct: 514 IFMRIREEAGKYIQRLQALAQTLAAVDVLQSFAAVAEQLHLVRPVFTAERRLQIEKGRHA 573 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + QS +I N L D + L+TGPNM GKST++RQ A+IVIMAQMG Sbjct: 574 VVEKVMGAQS---YIPNSILLDQETD-----IQLITGPNMSGKSTYMRQLAIIVIMAQMG 625 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 SYVPA A + + D +F+R+G+AD+L SG+STFMVEM+E + QA+ +S ++ DE+GR Sbjct: 626 SYVPAQSASLPLFDAIFTRIGAADDLVSGQSTFMVEMMEANRAIRQASERSLILFDELGR 685 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A IE++H + L ATH+HELT L SL+ N + + + + Sbjct: 686 GTATYDGMALAQAIIEHIHHYTGAKTLFATHYHELTALENSLEHLENVHVATLEKDGQVT 745 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 FLHK+ PG AD SYGI V K+AGLP ++ RA IL E Sbjct: 746 FLHKIEPGPADKSYGIHVAKIAGLPEKLLERADSILSHLE 785 >gi|29377617|ref|NP_816771.1| DNA mismatch repair protein MutS [Enterococcus faecalis V583] gi|227554585|ref|ZP_03984632.1| DNA mismatch repair protein [Enterococcus faecalis HH22] gi|257418006|ref|ZP_05595000.1| MutS1 protein [Enterococcus faecalis T11] gi|44888193|sp|Q82ZA2|MUTS_ENTFA RecName: Full=DNA mismatch repair protein mutS gi|29345084|gb|AAO82841.1| DNA mismatch repair protein HexA [Enterococcus faecalis V583] gi|227176262|gb|EEI57234.1| DNA mismatch repair protein [Enterococcus faecalis HH22] gi|257159834|gb|EEU89794.1| MutS1 protein [Enterococcus faecalis T11] gi|315573188|gb|EFU85379.1| DNA mismatch repair protein MutS [Enterococcus faecalis TX0309B] gi|315581310|gb|EFU93501.1| DNA mismatch repair protein MutS [Enterococcus faecalis TX0309A] Length = 858 Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust. Identities = 292/897 (32%), Positives = 484/897 (53%), Gaps = 71/897 (7%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM QY+ IK+ D+ +FYR+GDFYELF++DA+ A++ L +TLT R ++ IPMC Sbjct: 7 NTPMMEQYLSIKAQYKDAFLFYRLGDFYELFYEDAINAAQILELTLTSRNRNADDPIPMC 66 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H A YI LI+ G+++AICEQ+E P + K +V+R VV+LVTPGT+ + Sbjct: 67 GVPYHAAQGYIDTLIEQGYKVAICEQVEDP-----KTTKGMVKREVVQLVTPGTVMNSKG 121 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 L D+NYL AV ++ A++D+STG K + ++ + ++++ + +E++ Sbjct: 122 LEAKDNNYLTAVLTDGNQFGFAYVDLSTGELKTAVLADEEGVLNEASALQTKEMVLG--- 178 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + E+L + N+ F + A++ +T + +E Sbjct: 179 ------SGIPESLKENLSLRLNIIFSTQETVEENAEFSFLTN----ELINPLEIEITGKL 228 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 +SY+ TQ + I L +D ++ NLE+ +++ +G ++ +LL +D + Sbjct: 229 LSYLSVTQKRSLSHIQKAVEYQPDHFLKMDHYSKFNLELSQSIRTGQKKGTLLWLLDETK 288 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGRL + + PL +I R + + + +Q L + D+ R R+ Sbjct: 289 TAMGGRLLKQWLDRPLIQERQIKARQEMVQSLLNAYFERLDLQAALTNVYDLERLAGRVA 348 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLK------NDLPEELRGAVEKLKKLPQSLEKTLS 436 G +D+ +R + I L + +DL +L VE L L ++ Sbjct: 349 FGSVNGRDLIQLRTSLEQVPTIRQLIVGINQGEWDDLLVDL-NPVEDLVAL-------IA 400 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + ++++ P +G ++DG + LDE R K+ +A L+ K +ET IKNLKI +N Sbjct: 401 TAINEEAPLQITEGKVIKDGYNDQLDEYRDAMRNGKQWLAELEAKERQETGIKNLKIGYN 460 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GYFIE+T S+ + L++ ++ +QT++N RF T EL +LE I A ++ Sbjct: 461 RVFGYFIEITKSNLANLEEG-----KYERKQTLANAERFITPELKELERLILEAEEKSVE 515 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII-DNSTNFIVK 615 +E + F + + + L ++ I+ +D+ + A +++ Y RP + N+ N + Sbjct: 516 LEYQLFLAVREQVKTNIDRLQTLAKTISAVDVLQSFATISERYQYVRPTLRSNTKNLAIV 575 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 +GRHP+VEK L Q +I N ++ D + L+TGPNM GKST++RQ AL V+ Sbjct: 576 EGRHPVVEKVLGHQE---YIPNSIRMNPETD-----ILLITGPNMSGKSTYMRQLALTVV 627 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+G +VPA A + I D++F+R+G++D+L +G+STFMVEM+E L AT S ++ Sbjct: 628 MAQIGCFVPAESAEMPIFDQIFTRIGASDDLIAGQSTFMVEMMEANQALRHATPNSLILF 687 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGTAT DG+++A A IEY+H + + L +TH+HELT L ++LK N + + Sbjct: 688 DELGRGTATYDGMALAQAIIEYIHREVQAKTLFSTHYHELTVLDETLKGLKNIHVGAVEK 747 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--------------K 841 + ++FLHK++ G AD SYGI V K+AGLP+ ++ RA IL E Sbjct: 748 DGEVVFLHKMMEGPADKSYGIHVAKIAGLPSPLLERAATILSALEAEETTIPISVHHEEV 807 Query: 842 LYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 H + + + E+ T+E LS ++ +K +NL EM+PL AL L+ ++ Sbjct: 808 SEVHEETEQLSLFKEVSTEE----LS-----VIDTLKKMNLLEMTPLDALNMLHQLQ 855 >gi|257088271|ref|ZP_05582632.1| MutS 1 protein [Enterococcus faecalis D6] gi|256996301|gb|EEU83603.1| MutS 1 protein [Enterococcus faecalis D6] gi|315026534|gb|EFT38466.1| DNA mismatch repair protein MutS [Enterococcus faecalis TX2137] Length = 858 Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust. Identities = 292/897 (32%), Positives = 484/897 (53%), Gaps = 71/897 (7%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM QY+ IK+ D+ +FYR+GDFYELF++DA+ A++ L +TLT R ++ IPMC Sbjct: 7 NTPMMEQYLSIKAQYKDAFLFYRLGDFYELFYEDAINAAQILELTLTSRNRNADDPIPMC 66 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H A YI LI+ G+++AICEQ+E P + K +V+R VV+LVTPGT+ + Sbjct: 67 GVPYHAAQGYIDTLIEQGYKVAICEQVEDP-----KTTKGMVKREVVQLVTPGTVMNSKG 121 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 L D+NYL AV ++ A++D+STG K + ++ + ++++ + +E++ Sbjct: 122 LEAKDNNYLTAVLTDGNQFGFAYVDLSTGELKTAVLADEEGVLNEASALQTKEMVLG--- 178 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + E+L + N+ F + A++ +T + +E Sbjct: 179 ------SGIPESLKENLSLRLNIIFSTQETVEENAEFSFLTN----ELINPLEIEITGKL 228 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 +SY+ TQ + I L +D ++ NLE+ +++ +G ++ +LL +D + Sbjct: 229 LSYLSVTQKRSLSHIQKAVEYQPDHFLKMDHYSKFNLELSQSIRTGQKKGTLLWLLDETK 288 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGRL + + PL +I R + + + +Q L + D+ R R+ Sbjct: 289 TAMGGRLLKQWLDRPLIQERQIKERQEMVQSLLNAYFERLDLQAALTNVYDLERLAGRVA 348 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLK------NDLPEELRGAVEKLKKLPQSLEKTLS 436 G +D+ +R + I L + +DL +L VE L L ++ Sbjct: 349 FGSVNGRDLIQLRTSLEQVPTIRQLIVGINQGEWDDLLVDL-NPVEDLVAL-------IA 400 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + ++++ P +G ++DG + LDE R K+ +A L+ K +ET IKNLKI +N Sbjct: 401 TAINEEAPLQITEGNVIKDGYNDQLDEYRDAMRNGKQWLAELEAKERQETGIKNLKIGYN 460 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GYFIE+T S+ + L++ ++ +QT++N RF T EL +LE I A ++ Sbjct: 461 RVFGYFIEITKSNLANLEEG-----KYERKQTLANAERFITPELKELERLILEAEEKSVE 515 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII-DNSTNFIVK 615 +E + F + + + L ++ I+ +D+ + A +++ Y RP + N+ N + Sbjct: 516 LEYQLFLAVREQVKTNIDRLQTLAKTISAVDVLQSFATISERYQYVRPTLRSNTKNLAIV 575 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 +GRHP+VEK L Q +I N ++ D + L+TGPNM GKST++RQ AL V+ Sbjct: 576 EGRHPVVEKVLGHQE---YIPNSIRMNPETD-----ILLITGPNMSGKSTYMRQLALTVV 627 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+G +VPA A + I D++F+R+G++D+L +G+STFMVEM+E L AT S ++ Sbjct: 628 MAQIGCFVPAESAEMPIFDQIFTRIGASDDLIAGQSTFMVEMMEANQALRHATPNSLILF 687 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGTAT DG+++A A IEY+H + + L +TH+HELT L ++LK N + + Sbjct: 688 DELGRGTATYDGMALAQAIIEYIHREVQAKTLFSTHYHELTVLDETLKGLKNIHVGAVEK 747 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--------------K 841 + ++FLHK++ G AD SYGI V K+AGLP+ ++ RA IL E Sbjct: 748 DGEVVFLHKMMEGPADKSYGIHVAKIAGLPSPLLERAATILSALEAEETTIPISVHHEEV 807 Query: 842 LYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 H + + + E+ T+E LS ++ +K +NL EM+PL AL L+ ++ Sbjct: 808 SEVHEETEQLSLFKEVSTEE----LS-----VIDTLKKMNLLEMTPLDALNMLHQLQ 855 >gi|229547407|ref|ZP_04436132.1| DNA mismatch repair protein [Enterococcus faecalis TX1322] gi|229307439|gb|EEN73426.1| DNA mismatch repair protein [Enterococcus faecalis TX1322] Length = 858 Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust. Identities = 293/900 (32%), Positives = 490/900 (54%), Gaps = 77/900 (8%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM QY+ IK+ D+ +FYR+GDFYELF++DA+ A++ L +TLT R ++ IPMC Sbjct: 7 NTPMMEQYLSIKAQYKDAFLFYRLGDFYELFYEDAINAAQILELTLTSRNRNADDPIPMC 66 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H A YI LI+ G+++AICEQ+E P + K +V+R VV+LVTPGT+ + Sbjct: 67 GVPYHAAQGYIDTLIEQGYKVAICEQVEDP-----KTTKGMVKREVVQLVTPGTVMNSKG 121 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 L D+NYL AV ++ A++D+STG K + ++ + ++++ + +E++ Sbjct: 122 LEAKDNNYLTAVLTDGNQFGFAYVDLSTGELKTAVLADEEGVLNEASALQTKEMVLG--- 178 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + E+L + N+ F + A++ +T + +E Sbjct: 179 ------SGIPESLKENLSLRLNIIFSTQETVEENAEFSFLTN----ELINPLEIEITGKL 228 Query: 264 ISYIKKTQMVNKPTIGYPERE-DIQSTLFI--DSAARSNLEILRTL-SGSREQSLLKTID 319 +SY+ TQ K ++ + ++ + Q F+ D ++ NLE+ +++ +G ++ +LL +D Sbjct: 229 LSYLSVTQ---KRSLSHIQKAVEYQPDYFLKMDHYSKFNLELSQSIRTGQKKGTLLWLLD 285 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T GGRL + + PL +I R + + + +Q L + D+ R Sbjct: 286 ETKTAMGGRLLKQWLDRPLIQERQIKMRQEMVQSLLNAYFERLDLQAALTNVYDLERLAG 345 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLK------NDLPEELRGAVEKLKKLPQSLEK 433 R+ G +D+ +R + I L + +DL +L VE L L Sbjct: 346 RVAFGSVNGRDLIQLRTSLEQVPTIRQLIVGINQGEWDDLLVDL-NPVEDLVAL------ 398 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 +++ ++++ P +G ++DG + LDE R K+ +A L+ K +ET IKNLKI Sbjct: 399 -IATAINEEAPLQITEGNVIKDGYNDQLDEYRDAMRNGKQWLAELEAKERQETGIKNLKI 457 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GYFIE+T S+ + L++ ++ +QT++N RF T EL +LE I A Sbjct: 458 GYNRVFGYFIEITKSNLANLEEG-----KYERKQTLANAERFITPELKELERLILEAEEK 512 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII-DNSTNF 612 ++ +E + F + + + L ++ I+ +D+ + A +++ Y RP + N+ N Sbjct: 513 SVELEYQLFLAVREQVKTNIDRLQTLAKTISAVDVLQSFATISERYQYVRPTLRSNTKNL 572 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 + +GRHP+VEK L Q +I N ++ D + L+TGPNM GKST++RQ AL Sbjct: 573 AIVEGRHPVVEKVLGHQE---YIPNSIRMNPETD-----ILLITGPNMSGKSTYMRQLAL 624 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 V+MAQ+G +VPA A + I D++F+R+G++D+L +G+STFMVEM+E L AT S Sbjct: 625 TVVMAQIGCFVPAESAEMPIFDQIFTRIGASDDLIAGQSTFMVEMMEANQALRHATPNSL 684 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 ++ DE+GRGTAT DG+++A A IEY+H + + L +TH+HELT L ++LK N + Sbjct: 685 ILFDELGRGTATYDGMALAQAIIEYIHREVQAKTLFSTHYHELTVLDETLKGLKNIHVGA 744 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE------------ 840 + + ++FLHK++ G AD SYGI V K+AGLP+ ++ RA IL E Sbjct: 745 VEKDGEVVFLHKMMEGPADKSYGIHVAKIAGLPSPLLERAATILSALEAEETTIPSSVHH 804 Query: 841 --KLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 H + + + E+ T+E LS ++ +K +NL EM+PL AL L+ ++ Sbjct: 805 EEVSEVHEETEQLSLFKEVSTEE----LS-----VIDTLKKMNLLEMTPLDALNMLHQLQ 855 >gi|256960507|ref|ZP_05564678.1| MutS 1 protein [Enterococcus faecalis Merz96] gi|293385298|ref|ZP_06631114.1| DNA mismatch repair protein MutS [Enterococcus faecalis R712] gi|293389689|ref|ZP_06634133.1| DNA mismatch repair protein MutS [Enterococcus faecalis S613] gi|312906649|ref|ZP_07765649.1| DNA mismatch repair protein MutS [Enterococcus faecalis DAPTO 512] gi|312910891|ref|ZP_07769726.1| DNA mismatch repair protein MutS [Enterococcus faecalis DAPTO 516] gi|256951003|gb|EEU67635.1| MutS 1 protein [Enterococcus faecalis Merz96] gi|291077498|gb|EFE14862.1| DNA mismatch repair protein MutS [Enterococcus faecalis R712] gi|291080936|gb|EFE17899.1| DNA mismatch repair protein MutS [Enterococcus faecalis S613] gi|310627297|gb|EFQ10580.1| DNA mismatch repair protein MutS [Enterococcus faecalis DAPTO 512] gi|311288759|gb|EFQ67315.1| DNA mismatch repair protein MutS [Enterococcus faecalis DAPTO 516] Length = 858 Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust. Identities = 292/897 (32%), Positives = 483/897 (53%), Gaps = 71/897 (7%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM QY+ IK+ D+ +FYR+GDFYELF++DA+ A++ L +TLT R ++ IPMC Sbjct: 7 NTPMMEQYLSIKAQYKDAFLFYRLGDFYELFYEDAINAAQILELTLTSRNRNADDPIPMC 66 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H A YI LI+ G+++AICEQ+E P + K +V+R VV+LVTPGT+ + Sbjct: 67 GVPYHAAQGYIDTLIEQGYKVAICEQVEDP-----KTTKGMVKREVVQLVTPGTVMNSKG 121 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 L D+NYL AV ++ A++D+STG K + ++ + +++ + +E++ Sbjct: 122 LEAKDNNYLTAVLTDGNQFGFAYVDLSTGELKTAVLADEEGVLNQASALQTKEMVLG--- 178 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + E+L + N+ F + A++ +T + +E Sbjct: 179 ------SGIPESLKENLSLRLNIIFSTQETVEENAEFSFLTN----ELINPLEIEITGKL 228 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 +SY+ TQ + I L +D ++ NLE+ +++ +G ++ +LL +D + Sbjct: 229 LSYLSVTQKRSLSHIQKAVEYQPDHFLKMDHYSKFNLELSQSIRTGQKKGTLLWLLDETK 288 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGRL + + PL +I R + + + +Q L + D+ R R+ Sbjct: 289 TAMGGRLLKQWLDRPLIQERQIKARQEMVQSLLNAYFERLDLQAALTNVYDLERLAGRVA 348 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLK------NDLPEELRGAVEKLKKLPQSLEKTLS 436 G +D+ +R + I L + +DL +L VE L L ++ Sbjct: 349 FGSVNGRDLIQLRTSLEQVPTIRQLIVGINQGEWDDLLVDL-NPVEDLVAL-------IA 400 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + ++++ P +G ++DG + LDE R K+ +A L+ K +ET IKNLKI +N Sbjct: 401 TAINEEAPLQITEGNVIKDGYNDQLDEYRDAMRNGKQWLAELEAKERQETGIKNLKIGYN 460 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GYFIE+T S+ + L++ ++ +QT++N RF T EL +LE I A ++ Sbjct: 461 RVFGYFIEITKSNLANLEEG-----KYERKQTLANAERFITPELKELERLILEAEEKSVE 515 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII-DNSTNFIVK 615 +E + F + + + L ++ I+ +D+ + A +++ Y RP + N+ N + Sbjct: 516 LEYQLFLAVREQVKTNIDRLQTLAKTISAVDVLQSFATISERYQYVRPTLRSNTKNLAIV 575 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 +GRHP+VEK L Q +I N ++ D + L+TGPNM GKST++RQ AL V+ Sbjct: 576 EGRHPVVEKVLGHQE---YIPNSIRMNPETD-----ILLITGPNMSGKSTYMRQLALTVV 627 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+G +VPA A + I D++F+R+G++D+L +G+STFMVEM+E L AT S ++ Sbjct: 628 MAQIGCFVPAESAEMPIFDQIFTRIGASDDLIAGQSTFMVEMMEANQALRHATPNSLILF 687 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGTAT DG+++A A IEY+H + + L +TH+HELT L ++LK N + + Sbjct: 688 DELGRGTATYDGMALAQAIIEYIHREVQAKTLFSTHYHELTVLDETLKGLKNIHVGAVEK 747 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--------------K 841 + ++FLHK++ G AD SYGI V K+AGLP+ ++ RA IL E Sbjct: 748 DGEVVFLHKMMEGPADKSYGIHVAKIAGLPSPLLERAATILSALEAEETTIPSSVHHEEV 807 Query: 842 LYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 H + + + E+ T+E LS ++ +K +NL EM+PL AL L+ ++ Sbjct: 808 SEVHEETEQLSLFKEVSTEE----LS-----VIDTLKKMNLLEMTPLDALNMLHQLQ 855 >gi|257080441|ref|ZP_05574802.1| MutS 1 protein [Enterococcus faecalis E1Sol] gi|256988471|gb|EEU75773.1| MutS 1 protein [Enterococcus faecalis E1Sol] Length = 858 Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust. Identities = 292/897 (32%), Positives = 483/897 (53%), Gaps = 71/897 (7%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM QY+ IK+ D+ +FYR+GDFYELF++DA+ A++ L +TLT R ++ IPMC Sbjct: 7 NTPMMEQYLSIKAQYKDAFLFYRLGDFYELFYEDAINAAQILELTLTSRNRNADDPIPMC 66 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H A YI LI+ G+++AICEQ+E P + K +V+R VV+LVTPGT+ + Sbjct: 67 GVPYHAAQGYIDTLIEQGYKVAICEQVEDP-----KTTKGMVKREVVQLVTPGTVMNSKG 121 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 L D+NYL AV ++ A++D+STG K + ++ + ++++ + +E++ Sbjct: 122 LEAKDNNYLTAVLTDGNQFGFAYVDLSTGELKTAVLADEEGVLNEASALQTKEMVLG--- 178 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + E+L + N+ F + A++ +T + +E Sbjct: 179 ------SGIPESLKENLSLRLNIIFSTQETVEENAEFSFLTN----ELINPLEIEITGKL 228 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 +SY+ TQ + I L +D ++ NLE+ +++ +G ++ +LL +D + Sbjct: 229 LSYLSVTQKRSLSHIQKAVEYQPDHFLKMDHYSKFNLELSQSIRTGQKKGTLLWLLDETK 288 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGRL + + PL +I R + + + +Q L + D+ R R+ Sbjct: 289 TAMGGRLLKQWLDRPLIQERQIKARQEMVQSLLNAYFERLDLQAALTNVYDLERLAGRVA 348 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLK------NDLPEELRGAVEKLKKLPQSLEKTLS 436 G +D+ +R + I L + +DL +L VE L L ++ Sbjct: 349 FGSVNGRDLIQLRTSLEQVPTIRQLIVGINQGEWDDLLVDL-NPVEDLVAL-------IA 400 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + ++++ P +G ++DG + LDE R K+ +A L+ K +ET IKNLKI +N Sbjct: 401 TAINEEAPLQITEGNVIKDGYNDQLDEYRDAMRNGKQWLAELEAKERQETGIKNLKIGYN 460 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GYFIE+T S+ + L++ ++ +QT++N RF T EL +LE I A ++ Sbjct: 461 RVFGYFIEITKSNLANLEEG-----KYERKQTLANAERFITPELKELERLILEAEEKSVE 515 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII-DNSTNFIVK 615 +E F + + + L ++ I+ +D+ + A +++ Y RP + N+ N + Sbjct: 516 LEYHLFLAVREQVKTNIDRLQTLAKTISAVDVLQSFATISERYQYVRPTLRSNTKNLAIV 575 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 +GRHP+VEK L Q +I N ++ D + L+TGPNM GKST++RQ AL V+ Sbjct: 576 EGRHPVVEKVLGHQE---YIPNSIRMNPETD-----ILLITGPNMSGKSTYMRQLALTVV 627 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+G +VPA A + I D++F+R+G++D+L +G+STFMVEM+E L AT S ++ Sbjct: 628 MAQIGCFVPAESAEMPIFDQIFTRIGASDDLIAGQSTFMVEMMEANQALRHATPNSLILF 687 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGTAT DG+++A A IEY+H + + L +TH+HELT L ++LK N + + Sbjct: 688 DELGRGTATYDGMALAQAIIEYIHREVQAKTLFSTHYHELTVLDETLKGLKNIHVGAVEK 747 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--------------K 841 + ++FLHK++ G AD SYGI V K+AGLP+ ++ RA IL E Sbjct: 748 DGEVVFLHKMMEGPADKSYGIHVAKIAGLPSPLLERAATILSALEAEGTTIPISVHHEEV 807 Query: 842 LYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 H + + + E+ T+E LS ++ +K +NL EM+PL AL L+ ++ Sbjct: 808 SEVHEETEQLSLFKEVSTEE----LS-----VIDTLKKMNLLEMTPLDALNMLHQLQ 855 >gi|312977892|ref|ZP_07789638.1| DNA mismatch repair protein MutS [Lactobacillus crispatus CTV-05] gi|310895199|gb|EFQ44267.1| DNA mismatch repair protein MutS [Lactobacillus crispatus CTV-05] Length = 857 Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust. Identities = 271/815 (33%), Positives = 450/815 (55%), Gaps = 36/815 (4%) Query: 29 MRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPV 88 M QY EIK PD+ +FYR+GDFYELF DDA+ ++ L +TLT R IPM GVP Sbjct: 1 MEQYYEIKKQYPDAFLFYRVGDFYELFEDDAVKGAQILELTLTHRSNRTKNPIPMAGVPH 60 Query: 89 HTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPT 148 + Y+ L++ G+++A+CEQ+E P +AK +V+R +++LVTPGT+ + Sbjct: 61 MAVDTYVNTLVEKGYKVALCEQLEDPKKAK-----GMVKRGIIQLVTPGTMMNEGPNDAK 115 Query: 149 DSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKELSHA 207 DSNYL +V ++ + +A+ D+STG I+ + D + ++++ + RE++++ S + Sbjct: 116 DSNYLTSVITTKSGFGLAYSDLSTGEIYATHLKSFDAVSNELLSLRTREVVYNG---SLS 172 Query: 208 EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYI 267 E F N+ +++P E A+ + T G+ EK A + Y+ Sbjct: 173 EQNKDFMHKANITISRPTPI------EGEHAEISYVEQNLTNGA----EKEATRQLVGYL 222 Query: 268 KKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSITGAG 326 TQ + + + ++ L + ++NLE++ + +G + SL +D + T G Sbjct: 223 LSTQKRSLAHLQIAKSYEVNQYLQMSHTVQNNLELVASAKTGKKMGSLFWVLDKTHTAMG 282 Query: 327 GRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRG 386 GRL + +A PL + +IN R + + + LK D+ R R+ G Sbjct: 283 GRLLKQWLARPLLNMDEINHREEMVQALLDGYFTRENAVDALKGVYDLERLTGRIAFGNV 342 Query: 387 EPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTF 446 +++ + +++ IL+ ++D + L +K+ L + + + ++S + D P Sbjct: 343 NARELLQLSRSLQAVPVILDALEQSD-SDILVDFAKKIDPL-KGVAEMITSTIVKDPPVL 400 Query: 447 KRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVT 506 +GG ++ G D LD R + K+ +A ++ ++T I NLK+ +N GY+I+V+ Sbjct: 401 TTEGGLIQGGVDPQLDRYRDAMNNGKKWLAEMEADERQKTGIDNLKVGYNKVFGYYIQVS 460 Query: 507 SSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILS 566 + + S + DR+ +QT++N R+ T EL + EN I A + +E + F L Sbjct: 461 NGNKSKV-----PLDRYTRKQTLTNAERYITPELKEHENLILEAQTRSTDLEYDLFVKLR 515 Query: 567 NAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID-NSTNFIVKDGRHPIVEKT 625 + + +L +A +D+ A +A++ NYCRP ++ + V +GRHP+VEK Sbjct: 516 EDVKKYIPALQKLGGQLAALDVYCGFATVAEQNNYCRPTFHADNQDINVTNGRHPVVEKV 575 Query: 626 LKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPA 685 + ++ +I ND + ++L+TGPNM GKST++RQ ALI IMAQ+GS+VPA Sbjct: 576 M---TAGSYIPNDVKMD-----EGTNIYLITGPNMSGKSTYMRQMALIAIMAQVGSFVPA 627 Query: 686 SYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATL 745 A + I D++F+R+G+AD+L SG+STFMVEM E L AT +S V+ DEIGRGTAT Sbjct: 628 DSADLPIFDQIFTRIGAADDLISGQSTFMVEMSEANEALQYATKRSLVLFDEIGRGTATY 687 Query: 746 DGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKV 805 DG+++A A ++YLH+ + L ATH+HELT + ++L N + ++ N +IFLHK+ Sbjct: 688 DGMALAGAIVKYLHDKVGAKALFATHYHELTVMDETLDHLKNIHVGATEENGKLIFLHKI 747 Query: 806 IPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 +PG AD SYGI V +LAGLP V+ A +LK E Sbjct: 748 LPGPADQSYGIHVAQLAGLPRNVLREATKLLKRLE 782 >gi|256844548|ref|ZP_05550034.1| DNA mismatch repair protein MutS [Lactobacillus crispatus 125-2-CHN] gi|256849063|ref|ZP_05554496.1| DNA mismatch repair protein mutS [Lactobacillus crispatus MV-1A-US] gi|262047545|ref|ZP_06020500.1| DNA mismatch repair protein MutS [Lactobacillus crispatus MV-3A-US] gi|256613626|gb|EEU18829.1| DNA mismatch repair protein MutS [Lactobacillus crispatus 125-2-CHN] gi|256713839|gb|EEU28827.1| DNA mismatch repair protein mutS [Lactobacillus crispatus MV-1A-US] gi|260572121|gb|EEX28686.1| DNA mismatch repair protein MutS [Lactobacillus crispatus MV-3A-US] Length = 857 Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust. Identities = 271/815 (33%), Positives = 450/815 (55%), Gaps = 36/815 (4%) Query: 29 MRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPV 88 M QY EIK PD+ +FYR+GDFYELF DDA+ ++ L +TLT R IPM GVP Sbjct: 1 MEQYYEIKKQYPDAFLFYRVGDFYELFEDDAVKGAQILELTLTHRSNRTKNPIPMAGVPH 60 Query: 89 HTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPT 148 + Y+ L++ G+++A+CEQ+E P +AK +V+R +++LVTPGT+ + Sbjct: 61 MAVDTYVNTLVEKGYKVALCEQLEDPKKAK-----GMVKRGIIQLVTPGTMMNEGPNDAK 115 Query: 149 DSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKELSHA 207 DSNYL +V ++ + +A+ D+STG I+ + D + ++++ + RE++++ S + Sbjct: 116 DSNYLTSVITTKSGFGLAYSDLSTGEIYATHLKSFDAVSNELLSLRTREVVYNG---SLS 172 Query: 208 EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYI 267 E F N+ +++P E A+ + T G+ EK A + Y+ Sbjct: 173 EQNKDFMHKANITISRPTPI------EGEHAEISYVEQNLTNGA----EKEATRQLVGYL 222 Query: 268 KKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSITGAG 326 TQ + + + ++ L + ++NLE++ + +G + SL +D + T G Sbjct: 223 LSTQRRSLAHLQIAKSYEVNQYLQMSHTVQNNLELVASAKTGKKMGSLFWVLDKTHTAMG 282 Query: 327 GRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRG 386 GRL + +A PL + +IN R + + + LK D+ R R+ G Sbjct: 283 GRLLKQWLARPLLNMDEINHREEMVQALLDGYFTRENAVDALKGVYDLERLTGRIAFGNV 342 Query: 387 EPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTF 446 +++ + +++ IL+ ++D + L +K+ L + + + ++S + D P Sbjct: 343 NARELLQLSRSLQAVPVILDALEQSD-SDILVDFAKKIDPL-KGVAEMITSTIVKDPPVL 400 Query: 447 KRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVT 506 +GG ++ G D LD R + K+ +A ++ ++T I NLK+ +N GY+I+V+ Sbjct: 401 TTEGGLIQGGVDPQLDRYRDAMNNGKKWLAEMEADERQKTGIDNLKVGYNKVFGYYIQVS 460 Query: 507 SSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILS 566 + + S + DR+ +QT++N R+ T EL + EN I A + +E + F L Sbjct: 461 NGNKSKV-----PLDRYTRKQTLTNAERYITPELKEHENLILEAQTRSTDLEYDLFVKLR 515 Query: 567 NAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID-NSTNFIVKDGRHPIVEKT 625 + + +L +A +D+ A +A++ NYCRP ++ + V +GRHP+VEK Sbjct: 516 EDVKKYIPALQKLGGQLAALDVYCGFATVAEQNNYCRPTFHADNQDINVTNGRHPVVEKV 575 Query: 626 LKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPA 685 + ++ +I ND + ++L+TGPNM GKST++RQ ALI IMAQ+GS+VPA Sbjct: 576 M---TAGSYIPNDVKMD-----EGTNIYLITGPNMSGKSTYMRQMALIAIMAQVGSFVPA 627 Query: 686 SYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATL 745 A + I D++F+R+G+AD+L SG+STFMVEM E L AT +S V+ DEIGRGTAT Sbjct: 628 DSADLPIFDQIFTRIGAADDLISGQSTFMVEMSEANEALQYATKRSLVLFDEIGRGTATY 687 Query: 746 DGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKV 805 DG+++A A ++YLH+ + L ATH+HELT + ++L N + ++ N +IFLHK+ Sbjct: 688 DGMALAGAIVKYLHDKVGAKALFATHYHELTVMDETLDHLKNIHVGATEENGKLIFLHKI 747 Query: 806 IPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 +PG AD SYGI V +LAGLP V+ A +LK E Sbjct: 748 LPGPADQSYGIHVAQLAGLPRNVLREATKLLKRLE 782 >gi|288817361|ref|YP_003431708.1| DNA mismatch repair protein [Hydrogenobacter thermophilus TK-6] gi|288786760|dbj|BAI68507.1| DNA mismatch repair protein [Hydrogenobacter thermophilus TK-6] Length = 855 Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust. Identities = 290/902 (32%), Positives = 478/902 (52%), Gaps = 71/902 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD-IPMC 84 TPM+ QY K ++PD L+F+R+GDFYELF++DA + S+ LG+ LT R GK+ IPMC Sbjct: 11 TPMLSQYHHFKRLHPDCLLFFRLGDFYELFYEDAHIGSKELGLVLTSRPSGKGKERIPMC 70 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H++ +YI KL+ G+++AICEQ+E +AK LVRR V+R++TPGT E Sbjct: 71 GVPYHSSTNYITKLVSKGYKVAICEQMEDATQAK-----GLVRREVIRVITPGTYFEK-- 123 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 D + L V + A+++ STG F + + +++ + + PRE++ Sbjct: 124 ----DLSGLACVYVKGKRYFCAYLNPSTGEFVAGSFSQEQVYEFLCKFSPREVLLQRG-- 177 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 +H E + T + +F + E I D+ N+ + + G +Q E A Sbjct: 178 THLEPEKYIRTYKTELDEE---YFSRGLEEL-IRDF-NLHSYRSLGFETQEELIPCGCAY 232 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 Y+K TQ P + P+ + + ID AR LE+L + G + SL ID ++TG Sbjct: 233 LYLKSTQRGFTPFVSKPKPYSDEGYVRIDYRARRGLELLESYEGREDISLFSVIDRTLTG 292 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 G R + P +I ++ + + I++ LK PD+ R +SR+ Sbjct: 293 MGRRRLKFHLLHPFRSRERILQVQSAVEELTEKRQALKEIREYLKDMPDIERLISRISGN 352 Query: 385 RGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGA-------------VEKLKKLPQSL 431 P+D +++ LFL + L E GA ++ L++L Q + Sbjct: 353 VATPRDFVLLKKA---------LFLASRLKEGFSGAEFSSSLLKSLFEDMQDLRELAQDI 403 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + TL DD P ++GG ++DG LD R + S+ ++ + K +ET +++L Sbjct: 404 DNTLV----DDPPLHVKEGGLIKDGVSHELDRLRYICQNSESLLREYEEKLRKETGVQSL 459 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 KI +N +GY+IEVT + + F RQT+SN RF T EL LE +I +A Sbjct: 460 KIGYNRVMGYYIEVTKPNLKYVP------SYFKRRQTLSNAERFITEELSSLEEKILSAQ 513 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 +E E F L ++ + E++ ++Q + +D +LA +A E+ + +P I + Sbjct: 514 ARIKDMEYEIFASLRERVLSKVEAIARSAQKVGFLDYLQSLAYVALEKGWKKPQITDEKV 573 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 +K+GRHP++E +K ++ ND + + ++TGPNM GKS+++RQ A Sbjct: 574 IKIKEGRHPLIEAFVKD-----YVPNDTSID-----ERENIMIITGPNMAGKSSYIRQVA 623 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 ++ ++A MGS++P A IG V + +R+GS D LA G STFM EM++ ASILN A +S Sbjct: 624 VLTLLAHMGSFIPCQEAEIGTVSSIHARIGSGDILALGVSTFMNEMLDVASILNSADERS 683 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 ++LDE+GRGT+T DG+S+ A +EY+ + + R LLATH+ E+T L + + N + Sbjct: 684 LIVLDEVGRGTSTYDGISLTKALVEYIAKRVKARTLLATHYLEITKLEEEINGIRNYHMA 743 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR 851 VS E + FL+++ G A+ S+GI+V K+AGLP +I+RA +IL +E + + R Sbjct: 744 VSREGERVNFLYRLKRGSAEGSFGIEVAKMAGLPQELINRAKEILSEYESMLQLPFLE-R 802 Query: 852 LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTLEKYSTDEDS 911 +Y ++ K+ + F++ I+ +++ +PL AL L +K E+ +D+ Sbjct: 803 VYAESVRIANEKSW-----QEFLDYIESIDIANTTPLQALLVLSQLK----ERLKMLKDA 853 Query: 912 EP 913 P Sbjct: 854 SP 855 >gi|148270149|ref|YP_001244609.1| DNA mismatch repair protein MutS [Thermotoga petrophila RKU-1] gi|166232148|sp|A5ILG0|MUTS_THEP1 RecName: Full=DNA mismatch repair protein mutS gi|147735693|gb|ABQ47033.1| DNA mismatch repair protein MutS [Thermotoga petrophila RKU-1] Length = 793 Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust. Identities = 294/829 (35%), Positives = 455/829 (54%), Gaps = 62/829 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M QY+ IK DS++ +R+GDFYE FF+DA + S+ L I LT+R +D PM G Sbjct: 4 TPLMEQYLRIKEQYKDSILLFRLGDFYEAFFEDAKIVSKVLNIVLTRR-----QDAPMAG 58 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H N Y++KL++ G+++AIC+Q+E P ++KK L+RR V R+VTPG++ ED+ L Sbjct: 59 IPYHALNSYLKKLVEAGYKVAICDQMEEPSKSKK-----LIRREVTRVVTPGSILEDEFL 113 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 S T+ NY+ V+ + ++ + D+STG + S+ ++ D+++ I L Sbjct: 114 SETN-NYMAVVSEEKGQYCTIFCDVSTGEVLVHESSDEQETMDLLKNYSISQIVCPDHLK 172 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADY------YNITTVDTFGSFSQVEKTA 259 SL E V + SISE +D YN+ + F S KT Sbjct: 173 ----PSLKERFPGV--------YTESISEWYFSDLEEVEKAYNLKDIHHFELSSLALKTL 220 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 AA I Y+K T + + + P + + +DSA NL ++ G R ++L ++ Sbjct: 221 AAL-IKYVKYTMITEELNLKPPLLISQRDYMILDSATVENLSLI---PGDRGKNLFDVLN 276 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL + I PL D +I RL+++ + + + + ++ +L + DV R +S Sbjct: 277 NTETPMGARLLKKWILHPLVDRKQIEERLETVEKLVSDRMNLEELRDLLSNVRDVERIVS 336 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R++ R P+D+ +R+ + I LN L V K P+ L L + Sbjct: 337 RVEYNRSVPRDLVALRETLEI-IPKLNEILST-------FGVFKNLAFPERLLDLLQRAV 388 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 DD +G ++ G LDE R L + ++ + + K + T I+ LK+ +N Sbjct: 389 EDDPAGSPGEGKVIKRGFSPELDEYRDLLEHAEERLKEFEEKERKRTGIQKLKVGYNQVF 448 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IEVT ++ + D E K QT+ N RF T EL + E +I A +E Sbjct: 449 GYYIEVTKANLDKIPDDYERK------QTLVNSERFITPELKEFETKIMAAKERIEELEK 502 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F+ + + + E L S+ +A ID+ LA A +Y +PI +K GRH Sbjct: 503 ELFKNVCEEVKKHKEILLKISEELAKIDVLSTLAYDAILYSYTKPIFSEG-RLEIKGGRH 561 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 PIVE+ ++ F+ ND + N + ++TGPNM GKSTF+RQ LI +MAQ+ Sbjct: 562 PIVERF-----TQNFVENDIYMD-----NERRFVVITGPNMSGKSTFIRQVGLISLMAQI 611 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPA A + + D++F+R+G+ D+LA GRSTF+VEM E A IL ++T +S V+LDE+G Sbjct: 612 GSFVPAQKAILPVFDRIFTRMGARDDLAGGRSTFLVEMNEMALILLKSTEKSLVLLDEVG 671 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGT+T DG+SIAWA E L + C+ L ATHF ELT+L K + N T+ V + + + Sbjct: 672 RGTSTQDGVSIAWAISEELIKRG-CKVLFATHFTELTELEKHFPQVQNKTILVKEEGKNV 730 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 IF HKV+ G+AD SYGI+V K+AG+P+ VI+RAY+IL E+ + +N K Sbjct: 731 IFTHKVVDGVADRSYGIEVAKIAGIPDRVINRAYEIL---ERNFKNNTK 776 >gi|260591976|ref|ZP_05857434.1| DNA mismatch repair protein MutS [Prevotella veroralis F0319] gi|260536260|gb|EEX18877.1| DNA mismatch repair protein MutS [Prevotella veroralis F0319] Length = 886 Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust. Identities = 282/832 (33%), Positives = 455/832 (54%), Gaps = 34/832 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKH-LGKDI 81 K TPMM+Q+ +K+ +PD+++ +R GDFYE + +DA+ ++R LGITLT+R L I Sbjct: 6 KGLTPMMKQFFSMKAQHPDAMLLFRCGDFYETYGEDAVESARVLGITLTRRNNGGLSGSI 65 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKK--RGNKSL------VRRNVVRL 133 M G P H + Y+ KLI+ G R+AIC+Q+E P + ++ +G K L V+R + L Sbjct: 66 EMAGFPHHALDTYLPKLIRAGKRVAICDQLEDPKKKREAIKGKKGLSAMDKMVKRGITEL 125 Query: 134 VTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRID 193 VTPG D +L+ ++N+L A+ ++ ++++DISTG F D + Sbjct: 126 VTPGVALSDNVLNYKENNFLAAIHFGKSACGVSFLDISTGEFLTGEGTFDYVEKLFGSFQ 185 Query: 194 PREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS 253 P+E++F + +++ F T VF D + + ++ ++ + FG Sbjct: 186 PKEVLFDRSK--RRDFERYFGTRLCTFEMDDWVFTDQT-ARQKLLKHFGTKNLKGFGVEH 242 Query: 254 QVEKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS--GSR 310 AA AI Y+ TQ I R + + +D +LE++ ++ GS Sbjct: 243 LSNGVIAAGAILQYLDLTQHTQINHITSLTRIEEDKYVRMDRFTVRSLELVAPMNEGGS- 301 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 SLL ID +IT GGR+ + PL D IN RLD ++ F + N I + Sbjct: 302 --SLLNVIDNTITPMGGRMLRRWVVFPLNDVAVINERLDIVDHFFRASDFRNNIDEQFHQ 359 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS 430 D+ R +S++ +GR P+++ +++ +++ I + + + L E+L L + Sbjct: 360 MGDLERIISKVAVGRVSPREVVQLKNALKA-IEPVKAECLSTNNKSLNRIGEQLN-LCAN 417 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L + ++ D P G + G D LD+ RS+RD K+ + +Q K +T I + Sbjct: 418 LRDRIEKEINVDPPQLVAKGDVIASGYDKELDDLRSIRDNGKQYLLEIQEKEIAQTGISS 477 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ NN GY++EV ++ + + +D +I +QT++ R+ T EL + E +I A Sbjct: 478 LKVGFNNVFGYYLEVRNTFKNKVPED------WIRKQTLAQAERYITPELKEYEEKILGA 531 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 L E + F L + + + ++A +D ++ +A +Q+Y RP +D+S Sbjct: 532 DEKILAREGQLFMELIQDMQPFIPQIQVNANLVAHLDCLLSFMKIALQQHYVRPTVDDSD 591 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 + GRHP++E L + ++ ND L D ++ ++TGPNM GKS LRQ Sbjct: 592 VLDIHQGRHPVIETQLP--IGEQYVPNDVKL----DTEHQQIMMITGPNMAGKSALLRQT 645 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALIV++AQ+G +VPA A IGIVDK+F+RVG++DN++ G STFMVEM E A+ILN T + Sbjct: 646 ALIVLLAQIGCFVPAERARIGIVDKIFTRVGASDNISLGESTFMVEMTEAANILNNVTPR 705 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNA 788 S V+ DE+GRGT+T DG+SIAWA +EYLHE + R L ATH+HEL ++ KS R N Sbjct: 706 SLVLFDELGRGTSTYDGISIAWAIVEYLHEHPKAQARTLFATHYHELNEMEKSFSRIKNY 765 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + V + + IIFL K+ G ++HS+GI V ++AG+P +++ RA ILK E Sbjct: 766 NVSVKEVDGKIIFLRKLTRGGSEHSFGIHVAEIAGMPRSIVKRANVILKELE 817 >gi|199597365|ref|ZP_03210795.1| Mismatch repair ATPase (MutS family) protein [Lactobacillus rhamnosus HN001] gi|258540414|ref|YP_003174913.1| DNA mismatch repair protein MutS [Lactobacillus rhamnosus Lc 705] gi|199591625|gb|EDY99701.1| Mismatch repair ATPase (MutS family) protein [Lactobacillus rhamnosus HN001] gi|257152090|emb|CAR91062.1| DNA mismatch repair protein mutS [Lactobacillus rhamnosus Lc 705] Length = 857 Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust. Identities = 296/831 (35%), Positives = 449/831 (54%), Gaps = 59/831 (7%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S TPMM+QY IK+ PD+ +FYR+GDFYELF DDA+ ++ L +TLT R K IPM Sbjct: 6 SDTPMMQQYNAIKAQYPDAFLFYRIGDFYELFNDDAIKGAQLLELTLTARNKSADDPIPM 65 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H Y+ LI G+++AICEQ+E P +A +V+R V++L+TPGT + + Sbjct: 66 AGVPHHAVQSYVDILIDHGYKVAICEQMEDPKKAV-----GMVKRAVIQLITPGTNVDIK 120 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 + +NY+ AV +A A+ D+STG K++ D + + E Sbjct: 121 AGAAKTNNYITAVLPHAAGYAFAYGDVSTGELKVT--------------DLKSKFALQNE 166 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSIS----ESRIADYYNITTVDTFGSFSQVEKTA 259 LS L + P D + R+ T + GS+ + T Sbjct: 167 LS---------ALATKEIVVPEDLNDEDAAMLKKGERLLSVQQDTKPTSEGSYVSQDLTD 217 Query: 260 AAAA------ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILR-TLSGSREQ 312 A A ++Y+ TQ + I + L +D ARSNL+IL+ + +G + Sbjct: 218 PAEAAVVQMLMAYLLNTQKRSLAHIQKAVAYQPSAYLEMDQDARSNLDILQNSRTGRKGD 277 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 +LL +D + T GGRL + + PL D I+ R + + +++ + +Q+ L Sbjct: 278 TLLSLLDATKTAMGGRLLKQWLERPLLDIDAISVRQNQVQDLLEHFFERSELQERLTKVY 337 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQS 430 D+ R R+ G +D+ ++ + I ++ K D +ELRG ++ + + Sbjct: 338 DLERLAGRVAFGTVNGRDLIQLQTSLDQVPAIQDVLSKLDDGSFKELRGKIDPVSDVAGL 397 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 + +++ + P DGG + G + LD R SK+ IA L+ + T I N Sbjct: 398 IRRSIEP----EPPISVTDGGLILRGYNEKLDAYRDAMKNSKQWIAELEASERKATGIHN 453 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 L+I++N GYFIEVT S+ D + R+ +QT++N RF T EL + E I A Sbjct: 454 LRIRYNKVFGYFIEVTKSNL-----DKVPEGRYERKQTLTNAERFITPELKEKETLILEA 508 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 S+ +E + F+ + + Q + L + + I+ +D+ + A +A+ +Y RP + T Sbjct: 509 QESSTALEYDLFQDIREKVKAQIKRLQHLAAQISALDVLQSFATVAENNHYVRPTMHAGT 568 Query: 611 NFI-VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 + I VK GRHP+VE L Q S +I ND + D + L+TGPNM GKST++RQ Sbjct: 569 HDINVKGGRHPVVEHVLGQDS---YIPNDVIMDRDTD-----MLLITGPNMSGKSTYMRQ 620 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALIVIMAQ GS+VPA A + I D++F+R+G+AD+LA+G STFMVEM+E + L+ AT Sbjct: 621 LALIVIMAQAGSFVPADTADLPIFDQIFTRIGAADDLANGESTFMVEMLEANAALSHATA 680 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 S ++ DEIGRGTAT DG+++A A IEYLH+ + L +TH+HELT LS SL + N Sbjct: 681 SSLILFDEIGRGTATYDGMALAQAIIEYLHDHVHAKTLFSTHYHELTSLSDSLAKLKNVH 740 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + + + ++FLHK++PG AD SYGI V KLAGLP ++SRA ILK E Sbjct: 741 VGAVEEHGNLVFLHKMMPGPADKSYGIHVAKLAGLPADLLSRADTILKQLE 791 >gi|55822041|ref|YP_140482.1| DNA mismatch repair protein MutS [Streptococcus thermophilus CNRZ1066] gi|81676633|sp|Q5M1Z0|MUTS_STRT1 RecName: Full=DNA mismatch repair protein mutS gi|55738026|gb|AAV61667.1| DNA mismatch repair protein [Streptococcus thermophilus CNRZ1066] Length = 852 Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust. Identities = 284/886 (32%), Positives = 486/886 (54%), Gaps = 56/886 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKNYPDAFLLFRMGDFYELFYDDAVKAAQILEISLTSRNKNADNPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI L+++G+++AI EQ+E P +A +V+R VV+++TPGT+ + Sbjct: 67 VPYHSAQAYIDVLVEMGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVVDS--- 118 Query: 146 SPTDS--NYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEK 202 S DS N+L+A+ ++ + + ++++D+STG F + + S+I + RE++ Sbjct: 119 SKPDSANNFLVAIDKVGSRFGLSYMDVSTGEFFATELDDFSSVCSEIQNLKAREVVVG-- 176 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAA 261 L ET + + ++ S+ + Y+ V G S + +E + A+ Sbjct: 177 -------YDLLET------DEQVLVNQLNLLLSKETEGYD--DVHLIGNSLTDLESSVAS 221 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 + Y+ +TQM + + +I+ L + A +S+L++L +G + SL +D Sbjct: 222 KLLQYVHRTQMRELSHLQKAQHYEIKDYLQMSYATKSSLDLLENARTGKKHGSLFWLLDK 281 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G RL I PL + I R + I F+ N + + + LK D+ R SR Sbjct: 282 TKTAMGMRLLRTWIDRPLVNQASIIERQNIIQVFLDNFFERSDLAESLKGVYDIERLASR 341 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + G+ PKD+ + + + + ++ L++ + L G +++L LP+ LE + S + Sbjct: 342 VSFGKANPKDLIQLGHTL-AQVPVIKAILESFNDDALSGLLQELDALPE-LESLIRSAID 399 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D P +GG +RDG D +LD+ R + + IA ++ K E + I LKI +N G Sbjct: 400 PDAPATITEGGIIRDGFDETLDKYRKVMSEGTSWIADIEAKEREASGITTLKIDYNRKDG 459 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+ VT+S+ S++ D F + T+ N RF T EL +E + A + +E + Sbjct: 460 YYFHVTNSNLSLVP------DHFFRKATLKNSERFGTAELAKIEGEMLEAREKSSTLEYD 513 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F + + + L + ++ IA +D+ +LA+ A+ +Y RP+ ++ + GRH Sbjct: 514 IFMRVREQVERYIDRLQSLAKAIATVDVLQSLAVTAETNHYVRPVFNDEHRIAIDRGRHA 573 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + Q +I N + + L+TGPNM GKST++RQ AL V+MAQMG Sbjct: 574 VVEKVMGVQE---YIPNTITFDSQTN-----IQLITGPNMSGKSTYMRQLALSVVMAQMG 625 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 +YVPA + + D +++R+G+AD+L SG+STFMVEM+E + +AT S +I DE+GR Sbjct: 626 AYVPADSVDLPVFDAIYTRIGAADDLISGQSTFMVEMMEANQAIKRATPNSLIIFDELGR 685 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A + IE++H+ + + ATH+HELT LS SL N + + + + Sbjct: 686 GTATYDGMALAQSIIEFIHDKVGAKTMFATHYHELTALSNSLTHLVNVHVATLEKDGEVT 745 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK---LYHHNQKDMRLYYPEI 857 FLHK++ G AD SYGI V K+AGLP +++RA IL E + +K + P I Sbjct: 746 FLHKIVDGPADKSYGIHVAKIAGLPTDLLNRADTILTQLEGETVVIQPQEKVLSQEKPAI 805 Query: 858 QTKESK-----NNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +T ++ ++ ++N L ++++ L++ M+P+ + + +K Sbjct: 806 ETHVNEQISLFDDFTENPVL--QELRDLDIYNMTPMQVMMAVADLK 849 >gi|55820153|ref|YP_138595.1| DNA mismatch repair protein MutS [Streptococcus thermophilus LMG 18311] gi|81676784|sp|Q5M6I1|MUTS_STRT2 RecName: Full=DNA mismatch repair protein mutS gi|55736138|gb|AAV59780.1| DNA mismatch repair protein [Streptococcus thermophilus LMG 18311] Length = 852 Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust. Identities = 284/886 (32%), Positives = 486/886 (54%), Gaps = 56/886 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKNYPDAFLLFRMGDFYELFYDDAVKAAQILEISLTSRNKNADNPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI L+++G+++AI EQ+E P +A +V+R VV+++TPGT+ + Sbjct: 67 VPYHSAQAYIDVLVEMGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVVDS--- 118 Query: 146 SPTDS--NYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEK 202 S DS N+L+A+ ++ + + ++++D+STG F + + S+I + RE++ Sbjct: 119 SKPDSANNFLVAIDKVGSRFGLSYMDVSTGEFFATELDDFSSVCSEIQNLKAREVVVG-- 176 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAA 261 L ET + + ++ S+ + Y+ V G S + +E + A+ Sbjct: 177 -------YDLLET------DEQVLVNQLNLLLSKETEGYD--DVHLIGNSLTDLESSVAS 221 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 + Y+ +TQM + + +I+ L + A +S+L++L +G + SL +D Sbjct: 222 KLLQYVHRTQMRELSHLQKAQHYEIKDYLQMSYATKSSLDLLENARTGKKHGSLFWLLDK 281 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G RL I PL + I R + I F+ N + + + LK D+ R SR Sbjct: 282 TKTAMGMRLLRTWIDRPLVNQASIIERQNIIQVFLDNFFERSDLTESLKGVYDIERLASR 341 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + G+ PKD+ + + + + ++ L++ + L G +++L LP+ LE + S + Sbjct: 342 VSFGKANPKDLIQLGHTL-AQVPVIKAILESFNDDALSGLLQELDALPE-LESLIRSAID 399 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D P +GG +RDG D +LD+ R + + IA ++ K E + I LKI +N G Sbjct: 400 PDAPATITEGGIIRDGFDETLDKYRKVMSEGTSWIADIEAKEREASGITTLKIDYNRKDG 459 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+ VT+S+ S++ D F + T+ N RF T EL +E + A + +E + Sbjct: 460 YYFHVTNSNLSLVP------DHFFRKATLKNSERFGTAELAKIEGEMLEAREKSSTLEYD 513 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F + + + L + ++ IA +D+ +LA+ A+ +Y RP+ ++ + GRH Sbjct: 514 IFMRVREQVERYIDRLQSLAKAIATVDVLQSLAVTAETNHYVRPVFNDEHRIAIDRGRHA 573 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + Q +I N + + L+TGPNM GKST++RQ AL V+MAQMG Sbjct: 574 VVEKVMGVQE---YIPNTITFDSQTN-----IQLITGPNMSGKSTYMRQLALSVVMAQMG 625 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 +YVPA + + D +++R+G+AD+L SG+STFMVEM+E + +AT S +I DE+GR Sbjct: 626 AYVPADSVDLPVFDAIYTRIGAADDLISGQSTFMVEMMEANQAIKRATPNSLIIFDELGR 685 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A + IE++H+ + + ATH+HELT LS SL N + + + + Sbjct: 686 GTATYDGMALAQSIIEFIHDKVGAKTMFATHYHELTALSNSLTHLVNVHVATLEKDGEVT 745 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK---LYHHNQKDMRLYYPEI 857 FLHK++ G AD SYGI V K+AGLP +++RA IL E + +K + P I Sbjct: 746 FLHKIVDGPADKSYGIHVAKIAGLPTDLLNRADTILTQLEGETVVIQPQEKVLSQEKPAI 805 Query: 858 QTKESK-----NNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +T ++ ++ ++N L ++++ L++ M+P+ + + +K Sbjct: 806 ETHVNEQISLFDDFTENPVL--QELRDLDIYNMTPMQVMMAVADLK 849 >gi|311087320|gb|ADP67400.1| DNA mismatch repair protein MutS [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 802 Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust. Identities = 284/826 (34%), Positives = 475/826 (57%), Gaps = 48/826 (5%) Query: 17 DLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKH 76 +++ ++ + TPM++QY+ +KS PD L+FY+MGDFYELF++DA S L ITLTK+G Sbjct: 5 NIKNSMNNHTPMIKQYLSLKSQYPDMLLFYQMGDFYELFYEDAERISELLKITLTKKGYS 64 Query: 77 LGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTP 136 K IPM GVP H + +Y+ KL+K+G IAIC+Q + + KK+ L+ R VVR++TP Sbjct: 65 NHKIIPMAGVPCHKSEYYLSKLVKLGESIAICDQ-QKETDCKKK----LISRKVVRIITP 119 Query: 137 GTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST--SNHDRLISDIMRIDP 194 GT+T++ LL + N++ A+ + ++ + +D+S G F +S S+ D L+S+I R +P Sbjct: 120 GTVTDEVLLEENEDNFIAAIWKENNQFGYSVLDLSLGFFGVSKIFSSCD-LLSEIERTNP 178 Query: 195 REIIFSEKELSHAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFS 253 +EI++ E + +F + + ++ FD S + +N ++D FG Sbjct: 179 KEILYPEN------FSDVFLIESRKCIRKRSLLEFDLETSYKLLNLQFNTCSLDGFG--- 229 Query: 254 QVEKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG 308 +EK AA + Y+K M P I + ++ ++F++ + R +LEI + +SG Sbjct: 230 -IEKNNFVIRAAGCLLQYVKSMNMTVLPNIRQLKYNYMEDSIFMNFSTRKSLEITQNISG 288 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKIL 368 ++ +L ++ ++T G R+ + SPL + + R +S+ F +Q IL Sbjct: 289 EKKNTLSAILNKTVTSMGSRMLNRWLNSPLKNFKIVRNRHESVEAF---QFFYKELQFIL 345 Query: 369 KSSPDVPRSLSRLKIGRGEPKDIAVIRDG--IRSGINILNLFLKNDLPEELRGAVEKLKK 426 + D+ R SRL + P D +R I ++++ +K+ +++R ++ ++ Sbjct: 346 RQVNDLERIYSRLALRTASPHDFVRMRSTLEILPNLHLILKKIKSKHIKKIRLSIGYFEE 405 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 + L+K +S S + RDGG + + + LDE RS++ SK I + + K ++ Sbjct: 406 VLCLLKKAISLKPSKCI----RDGGVIAELYNIELDELRSIKINSKEYIKNFEQKEKKKL 461 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 I++ KIK N +GY+I+++ ++ K ++ QT+ N R++ L + E + Sbjct: 462 MIESFKIKFNKIIGYYIQISKRHTHLIPK------YYVIIQTLKNTERYSVPLLKEYEEK 515 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 + N+ +LL+E + + + N I E L N++ ++ +D+ + L+ A NY RPI+ Sbjct: 516 VLNSEMRSLLLEKKLYAEIFNIIEPFLEKLQNSALALSELDVLVNLSERAISLNYTRPIM 575 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 + + RHP+VE LK PFI N LS + ++ ++TGPNMGGKST+ Sbjct: 576 SEKYGISLLESRHPVVECFLKT----PFIKNSVFLS-----RTQRMIIITGPNMGGKSTY 626 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ ALIVIMA +GS+VPA YA IG +DK+F+R+GSAD+L++G STFM+EM+E ++IL+ Sbjct: 627 MRQIALIVIMAGIGSFVPARYALIGSIDKIFTRIGSADDLSNGYSTFMMEMMEISNILHN 686 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT+ S V++DE+GRGT+T +GLS+AW+ YL N+ LL+THF ELT L + K Sbjct: 687 ATSNSLVLIDELGRGTSTNEGLSLAWSCSRYLININKSMTLLSTHFVELTKLEEKEKFVK 746 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 N S+ I FL+K+ GI+ SYGI V L+GLP++V+ A Sbjct: 747 NFHFSAIKSDLHIAFLYKIKNGISKKSYGISVASLSGLPDSVLEDA 792 >gi|292491934|ref|YP_003527373.1| DNA mismatch repair protein MutS [Nitrosococcus halophilus Nc4] gi|291580529|gb|ADE14986.1| DNA mismatch repair protein MutS [Nitrosococcus halophilus Nc4] Length = 914 Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust. Identities = 283/820 (34%), Positives = 441/820 (53%), Gaps = 38/820 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD-IPMC 84 T MM QY IK+ D+L+F+R GDFYE+F++DA LASR L I LT R + + +PMC Sbjct: 48 TDMMAQYRGIKAQYQDALLFFRFGDFYEMFYEDAALASRELDIVLTSRPQAKNSERVPMC 107 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H Y+ +LI GH++AICEQ+E +K RG L++R V+R+VTPGT E + Sbjct: 108 GVPYHRLETYVARLIGKGHKVAICEQLEG--ASKGRG---LIQREVIRVVTPGTFFEAE- 161 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 L A+ + +A + ++TG F + ++ + L + R P+EI+ E + Sbjct: 162 ---RQEGALAALCFEGEQIGMALLQLATGEFLLLEASREELPGVLSRFRPQEILLQEGQR 218 Query: 205 SHA--EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 A Y+ QP F + + +AD++ + + ++ AA Sbjct: 219 LEALPHYQPFI-------AEQPAEAFIPEQALTLLADHFGREAIASLVPTARQGLVAAGV 271 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYS 321 + Y+K+TQM P + P++E +F+D+ + NLE++ + G+ E +LL +D + Sbjct: 272 LLGYVKETQMGFLPHLQVPKQESRDQFVFLDAQTQRNLELVENIYQGTEEGTLLAVLDRA 331 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G R + PL T I R D++ + L +Q+ L D+ R SR+ Sbjct: 332 RTSMGRRRLKRWLLHPLRAVTPIQERQDAVAELVLKHSLRTRLQEALAQVLDLERLTSRI 391 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 P+D+ +R + I +L +P L G +L L + L + +L D Sbjct: 392 TSAVANPRDLVALRTSLAPLPLIHDLLSATPIPL-LHGLGSQLDVL-EDLHAEIQRVLVD 449 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + ++GG +R G A LDE ++ + +A+ + + + T+I NLK+ N GY Sbjct: 450 EPRVTVKEGGLIRPGVCAELDELHAVGQEGTGWLANYEQQERDRTQIGNLKVGFNKVFGY 509 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IE+T S+ + D + RQT++N RF T L E + A A +E + Sbjct: 510 YIEITKSNLGAVPLD------YQRRQTLANAERFITDPLKAFEQQTLLALERAKELEYQR 563 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 F L + + Q+ L ++V+ +D +L +A Q + +P + + + +GRHP+ Sbjct: 564 FVELRDQVATQAARLRQTAEVLGTLDGLASLGEVAASQGWVKPEVSEGHHLTITEGRHPV 623 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE +L+ + F+ ND L +LTGPN GKST+ RQ A++V++AQ+GS Sbjct: 624 VE-SLRGE----FVPNDLHLG-----QDPSFLILTGPNAAGKSTYARQAAILVLLAQIGS 673 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA AHIG+VD++F+RVG+AD LA G STFM+EM+ETA+IL AT++S VILDE+GRG Sbjct: 674 FVPAETAHIGVVDRIFTRVGAADFLARGLSTFMMEMMETANILRYATSKSLVILDEVGRG 733 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 T T DG +IA A E L + + R L TH+H+L L+ + NA L V + E + F Sbjct: 734 TGTSDGQAIAQAVAEMLAQEIKARTLFTTHYHQLAALADRIPSMANARLAVREEQEEVSF 793 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 L+KV+PG A SYGI V KLAGLP V+ RA ++L E+ Sbjct: 794 LYKVVPGAAPKSYGIYVAKLAGLPPAVVQRASELLAQLEQ 833 >gi|154150759|ref|YP_001404377.1| DNA mismatch repair protein MutS [Candidatus Methanoregula boonei 6A8] gi|153999311|gb|ABS55734.1| DNA mismatch repair protein MutS [Methanoregula boonei 6A8] Length = 903 Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust. Identities = 312/899 (34%), Positives = 482/899 (53%), Gaps = 47/899 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 ++ TP MRQY EIK+ PD+++F+ +GDF+E DA + S+ L + LT R K+ + IP Sbjct: 17 RTLTPGMRQYREIKAQYPDAILFFHIGDFFETLEGDAEIVSKELDLVLTSRSKNGDQRIP 76 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 + GVP H YI +L+ G+++AICEQ E P AK LV+R VVR++TPGT+ + Sbjct: 77 LAGVPHHAGEGYIARLVAKGYKVAICEQTEDPKTAK-----GLVKREVVRVITPGTVIDP 131 Query: 143 QLLSPTDSNYLMAVA--RIRTEWAIAWIDISTGIFKI-------STSNHDRLISDIMRID 193 +L + + YLMAV+ +W IA +DISTG F + ST N L S+I R Sbjct: 132 VMLPSSAAAYLMAVSPGTKGADWGIALLDISTGEFFVLAIPAEGSTGN---LRSEIARYR 188 Query: 194 PREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS 253 P E I E ++ G V + F + + +++ + ++ +G Sbjct: 189 PAECIVPSS--VDEELRTSLRRDGVVVTPYADDRFLPDRAGRTLCEHFGVASLAGYGCEG 246 Query: 254 Q-VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSRE 311 +AA AA+SY TQ P + + +D+ NLE+ ++ G++ Sbjct: 247 MPAAVSAAGAALSYAADTQKSTLPHVSSLFTRSSAQGMMLDAITLRNLEVHESIRGGTKG 306 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 +L T+D + T G R + PLTD +IN RLD++ +F + L ++++L Sbjct: 307 ATLFSTLDRTKTPMGSRFLRLHLTRPLTDIARINARLDAVEYFTASATLRMTLRELLTRH 366 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF----LKND----LPEELRGAVEK 423 D+ R +R+ G P+D+ + + + + I L + +D +P + A + Sbjct: 367 ADIERITARISYGNAGPRDLVALAETLATLPEIRKLLAGPSVGSDNSAPVPRRVAAARDC 426 Query: 424 LKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 L LP S+ + ++DD P ++GG +R G A LD + K IA LQ + Sbjct: 427 LFDLP-SIIDLIRRAITDDPPAIAKNGGVIRSGYSAELDGMTGVLHSGKNWIAELQQQER 485 Query: 484 EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDL 543 E+T IK+LKI +N GY+I+V+ S+ +++ R+ RQT + R+T EL + Sbjct: 486 EKTGIKSLKIGYNRIFGYYIDVSKSNIALVPA------RYERRQTTATGERYTIPELREK 539 Query: 544 ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCR 603 E IT+A L +E + L + I ++ +L + S+ IA +D++ ALA A + +Y R Sbjct: 540 EAVITDADERVLALERSLYAGLIDEIRKEIPALQSISRGIATLDVAAALADAATDFDYVR 599 Query: 604 PIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 P D +D RHP+VE++L + F+ ND +LS KN ++ ++TG NM GK Sbjct: 600 PRPDTGDAITCRDIRHPVVEQSL----AGGFVPNDTELS--GSKN--QIMIITGANMAGK 651 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 ST++R AL IMAQ GS+VPA A IGI+D++F+RVG+ D+LASG+STF VEM+E A+I Sbjct: 652 STYMRSVALCCIMAQAGSFVPARSAQIGIIDRIFTRVGAFDDLASGQSTFFVEMLELANI 711 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC--RGLLATHFHELTDLSKS 781 LN T +S VILDEIGRGT+T DG SIA A +EYLH + + L ATHFHEL + Sbjct: 712 LNNMTEKSLVILDEIGRGTSTADGCSIAQAVLEYLHGKSSAGPKTLFATHFHELIGMEAE 771 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA-YDILKTFE 840 LKR N V ++ + ++FL K+IPG D SYGI V +LAG+P RA + +T + Sbjct: 772 LKRVKNYHFAVQETKQDVVFLRKLIPGATDKSYGIHVARLAGIPKKATDRAEVHLCETLK 831 Query: 841 KLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + K R + + + +I L+ D M+P+ AL L +K+ Sbjct: 832 RDASGGSKARRYTQLLLADDNLPARAAAAPDPVIAEIAGLDPDSMTPMQALSKLAELKS 890 >gi|149276269|ref|ZP_01882413.1| DNA mismatch repair protein [Pedobacter sp. BAL39] gi|149232789|gb|EDM38164.1| DNA mismatch repair protein [Pedobacter sp. BAL39] Length = 858 Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust. Identities = 277/819 (33%), Positives = 445/819 (54%), Gaps = 34/819 (4%) Query: 29 MRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPV 88 M+QY IK+ P +L+ +R+GDFYE F +DA+ S+ LGI LT RG G I + G P Sbjct: 1 MQQYNVIKAKYPGALLLFRVGDFYETFGEDAIKTSQILGIILTNRGNGPGGKIELAGFPH 60 Query: 89 HTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPT 148 H+ +Y+ KL++ G R+AIC+Q+E P + K++V+R V LVTPG D +LS Sbjct: 61 HSLENYLSKLVRAGQRVAICDQLEDP-----KTTKTIVKRGVTELVTPGVAYNDNILSQK 115 Query: 149 DSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHAE 208 +NYL AV + ++++DISTG F ++ N + + + P E++F + ++ Sbjct: 116 SNNYLAAVYFDKAGLGVSFMDISTGEFHLAQGNAEYIDKLLQGFKPNEVVFQK-----SK 170 Query: 209 YKSLFETLGN--VAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAIS 265 K E G+ + F + + ++ ++++ FG Q+ AA + Sbjct: 171 RKEFMELFGDRFYTYHLDDWAFTSDYANETLNKHFEVSSLKGFGIDKLQLGIIAAGVVLH 230 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y+ +T+ N I R + +++D NLE++ + S +L + +D + T Sbjct: 231 YLNETEHRNLKHITSITRLEEDKYMWLDRFTIRNLELVSS-SNDNAVTLFQILDQTSTPM 289 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 G RL + I PL + I RL + F + + L+ +K D+ R +S++ + + Sbjct: 290 GARLLHKWIIMPLKELKPIQERLGMVEFLVADEPLVEEFLSHIKQIGDLERLISKVGLQK 349 Query: 386 GEPKDIAVIRDGIR--SGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 P+++ ++ + I ++ KN +L ++ + + LE+ ML D Sbjct: 350 VGPRELCQLKKALYHIEEIKKISETAKNPFLSKLADQMDCCLSIREQLER----MLQQDP 405 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P G + DG D LD R + K + +Q + A T I +LK+ NN GY++ Sbjct: 406 PALVIKGNVIADGIDEELDRLRKISFGGKDYLVEIQKREAAATGIPSLKVAFNNVFGYYL 465 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EVT + + D +I +QT+ + R+ T EL + E +I A + IEL + Sbjct: 466 EVTHTHKDKVPAD------WIRKQTLVSAERYITPELKEYEEQILGAEEKIMQIELRIYG 519 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L + + + IA +D+ + A LA + +Y +P ++ +K GRHP++E Sbjct: 520 ELMLQVSAYIREIQLNAFTIAQLDVLLCFAQLALKNHYVKPEVNQGKVLDIKGGRHPVIE 579 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 K L + +I ND L D + ++ ++TGPNM GKS LRQ LIV+MAQMG +V Sbjct: 580 KRLP--VGEEYITNDVFL----DNETQQVIIITGPNMSGKSAILRQTGLIVLMAQMGCFV 633 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA A IG+VDK+F+RVG++DNL+SG STFMVEM ETASILN ++ S ++LDEIGRGT+ Sbjct: 634 PAKAAAIGLVDKIFTRVGASDNLSSGESTFMVEMNETASILNNISDNSLILLDEIGRGTS 693 Query: 744 TLDGLSIAWATIEYL--HETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 T DG+SIAWA E+L H T + + L ATH+HEL +L+ ++ R N + + + +IF Sbjct: 694 TYDGISIAWAIAEFLHTHPTAKPKTLFATHYHELNELANTMSRIKNFNVSIKELGNKVIF 753 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 L K+IPG ++HS+GI V K+AG+P +I+RA +ILK E Sbjct: 754 LRKLIPGGSEHSFGIHVAKMAGMPPKLIARANEILKKLE 792 >gi|258509230|ref|YP_003171981.1| DNA mismatch repair protein MutS [Lactobacillus rhamnosus GG] gi|257149157|emb|CAR88130.1| DNA mismatch repair protein mutS [Lactobacillus rhamnosus GG] Length = 857 Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust. Identities = 296/831 (35%), Positives = 449/831 (54%), Gaps = 59/831 (7%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S TPMM+QY IK+ PD+ +FYR+GDFYELF DDA+ ++ L +TLT R K IPM Sbjct: 6 SDTPMMQQYNAIKAQYPDAFLFYRIGDFYELFNDDAIKGAQLLELTLTARNKSADDPIPM 65 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H Y+ LI G+++AICEQ+E P +A +V+R V++L+TPGT + + Sbjct: 66 AGVPHHAVQSYVDILIDHGYKVAICEQMEDPKKAV-----GMVKRAVIQLITPGTNIDIK 120 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 + +NY+ AV +A A+ D+STG K++ D + + E Sbjct: 121 AGAAKTNNYITAVLPHAAGYAFAYGDVSTGELKVT--------------DLKSKFALQNE 166 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSIS----ESRIADYYNITTVDTFGSFSQVEKTA 259 LS L + P D + R+ T + GS+ + T Sbjct: 167 LS---------ALATKEIVVPEDLNDEDAAMLKKGERLLSVQQDTKPTSEGSYVSQDLTD 217 Query: 260 AAAA------ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILR-TLSGSREQ 312 A A ++Y+ TQ + I + L +D ARSNL+IL+ + +G + Sbjct: 218 PAEAAVVQMLMAYLLNTQKRSLAHIQKAVAYQPSAYLEMDQDARSNLDILQNSRTGRKGD 277 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 +LL +D + T GGRL + + PL D I+ R + + +++ + +Q+ L Sbjct: 278 TLLSLLDATKTAMGGRLLKQWLERPLLDIDAISVRQNQVQDLLEHFFERSELQERLTKVY 337 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQS 430 D+ R R+ G +D+ ++ + I ++ K D +ELRG ++ + + Sbjct: 338 DLERLAGRVAFGTVNGRDLIQLQTSLDQVPAIQDVLSKLDDGSFKELRGKIDPVSDVAGL 397 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 + +++ + P DGG + G + LD R SK+ IA L+ + T I N Sbjct: 398 IRRSIEP----EPPISVTDGGLILRGYNEKLDAYRDAMKNSKQWIAELEASERKATGIHN 453 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 L+I++N GYFIEVT S+ D + R+ +QT++N RF T EL + E I A Sbjct: 454 LRIRYNKVFGYFIEVTKSNL-----DKVPEGRYERKQTLTNAERFITPELKEKETLILEA 508 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 S+ +E + F+ + + Q + L + + I+ +D+ + A +A+ +Y RP + T Sbjct: 509 QESSTALEYDLFQDIREKVKAQIKRLQHLAAQISALDVLQSFATVAENNHYVRPTMHAGT 568 Query: 611 NFI-VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 + I VK GRHP+VE L Q S +I ND + D + L+TGPNM GKST++RQ Sbjct: 569 HDINVKGGRHPVVEHVLGQDS---YIPNDVIMDRDTD-----MLLITGPNMSGKSTYMRQ 620 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALIVIMAQ GS+VPA A + I D++F+R+G+AD+LA+G STFMVEM+E + L+ AT Sbjct: 621 LALIVIMAQAGSFVPADTADLPIFDQIFTRIGAADDLANGESTFMVEMLEANAALSHATA 680 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 S ++ DEIGRGTAT DG+++A A IEYLH+ + L +TH+HELT LS SL + N Sbjct: 681 SSLILFDEIGRGTATYDGMALAQAIIEYLHDHVHAKTLFSTHYHELTSLSDSLAKLKNVH 740 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + + + ++FLHK++PG AD SYGI V KLAGLP ++SRA ILK E Sbjct: 741 VGAVEEHGNLVFLHKMMPGPADKSYGIHVAKLAGLPADLLSRADTILKQLE 791 >gi|188992527|ref|YP_001904537.1| DNA mismatch repair protein MutS [Xanthomonas campestris pv. campestris str. B100] gi|167734287|emb|CAP52497.1| DNA mismatch repair protein mutS [Xanthomonas campestris pv. campestris] Length = 851 Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust. Identities = 291/884 (32%), Positives = 470/884 (53%), Gaps = 48/884 (5%) Query: 29 MRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPV 88 M+Q+ KS PD L+F+RMGDFYELF+DDA A+R L ITLT+RG G IPM GVPV Sbjct: 1 MKQFFAAKSDYPDLLLFFRMGDFYELFYDDARKAARLLDITLTQRGSSGGAPIPMAGVPV 60 Query: 89 HTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPT 148 H Y+ +L+ +G +AICEQI P AK LV R VVR+VTPGT+T++ LL Sbjct: 61 HAYEGYLARLVALGESVAICEQIGDPALAK-----GLVERKVVRIVTPGTVTDEALLDER 115 Query: 149 DSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEKELSHA 207 LMA++R + + +AW D+++G F ++ + D L ++I R++P E++ +++ Sbjct: 116 RDTLLMAISRSKQGYGLAWADLASGRFLVNEVDSVDALEAEIARLEPAELLVPDED---- 171 Query: 208 EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAISY 266 F +P FD ++ ++ + + FG AA A + Y Sbjct: 172 -NWPEFLRGRVGVRRRPPWLFDADSGRRQLLAFFKLHDLSGFGIDDKPCATAAAGALLGY 230 Query: 267 IKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAG 326 +++TQ P + E + +++A R +LE+ + G +LL +D ++T G Sbjct: 231 VEETQKQRLPHLTSIAMEVASEAISMNAATRRHLELDTRVDGDTRNTLLGVLDSTVTPMG 290 Query: 327 GRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRG 386 GRL + PL + R ++ I + +++ ++ D+ R L+R+ + Sbjct: 291 GRLLRRWLHRPLRLREVLVQRHHAVGSLIDTGADTD-VREAFRALGDLERILTRVALRSA 349 Query: 387 EPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK------TLSSMLS 440 P+D + +RDG+ + + D P +L+ L L + L S ++ Sbjct: 350 RPRDFSTLRDGLALLPKVRTILAPLDSP--------RLQTLYAELGEHDATAHLLISAVA 401 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 + P DGG + G DA LDE R L + + + L+ + + I LK+ +N G Sbjct: 402 EQPPLKFSDGGVIATGYDADLDELRRLSTNADQFLIDLEQRERASSGIATLKVGYNRVHG 461 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IE++ A ++ + RQT++N R+ T EL E+++ +A +L E Sbjct: 462 YYIEISKGQAE------KAPLHYSRRQTLTNAERYITEELKSFEDKVLSARERSLSREKL 515 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 +E L +A+ + E L + ++ +D+ A A+ ++ +P ++++ ++ GRHP Sbjct: 516 LYEGLLDALGGELEGLKRCASALSELDVLAGFAERAQALDWSQPELESAPCLHIERGRHP 575 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE Q PF ND DL P+ + + ++TGPNMGGKST++RQNALIV++A +G Sbjct: 576 VVEAVRDQ----PFEPNDLDLH-PDRR----MLVITGPNMGGKSTYMRQNALIVLLAHIG 626 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 SYVPAS A IG +D++ +R+G+ D+LA G+STFMVEM ET+ IL+ AT QS V++DEIGR Sbjct: 627 SYVPASRAVIGPIDRILTRIGAGDDLARGQSTFMVEMAETSYILHHATPQSLVLMDEIGR 686 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR-----FHNATLQVSDS 795 GT+T DGL++A A +L TNRC L ATH+ ELT L+ + N L + Sbjct: 687 GTSTYDGLALADAVARHLAHTNRCYTLFATHYFELTALADASHAGGGSGIANVHLDAVEH 746 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 E ++F+H V G A+ S+G+QV LAGLP + +A L E+ + + Sbjct: 747 GERLVFMHAVKDGPANRSFGLQVAALAGLPKAAVQQARRRLAELEQ-RGGDSHAAEMAPA 805 Query: 856 EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + + + E ++ L+ DE++P AL+ LY +KA Sbjct: 806 ALDAPQQFGLFTAPSSAAQEALQALDPDELTPKQALEALYRLKA 849 >gi|121604266|ref|YP_981595.1| DNA mismatch repair protein MutS [Polaromonas naphthalenivorans CJ2] gi|189083170|sp|A1VLZ6|MUTS_POLNA RecName: Full=DNA mismatch repair protein mutS gi|120593235|gb|ABM36674.1| DNA mismatch repair protein MutS [Polaromonas naphthalenivorans CJ2] Length = 870 Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust. Identities = 296/875 (33%), Positives = 458/875 (52%), Gaps = 31/875 (3%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY IK+ PD+LVFYRMGDFYE+F+ DA AS L ITLTKRG+ G+ + M G Sbjct: 19 TPMMTQYHAIKAEYPDTLVFYRMGDFYEVFYADAEKASSLLDITLTKRGQSAGEPVVMAG 78 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H Y+ KLIK+G +AICEQ+ AK V R VVR+VTPGTLT+ +LL Sbjct: 79 IPFHALEGYLAKLIKLGESVAICEQVGDVATAK-----GPVERKVVRVVTPGTLTDTELL 133 Query: 146 SPTDSNYLMAVAR-IRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 S + L+AV + R +AW+ ++ G ++ + L + + RI P E++++ Sbjct: 134 SDKTESILLAVHQGARNTCGLAWLSVTQGEIHLAHCANGELETWLARIAPSELLYNVD-- 191 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 + ++ +T A A+P FD ++ R+ D + ++ ++ + E AAA+A+ Sbjct: 192 ATPAFEQRLQTQRCAASARPAWQFDAALGVRRLLDQLKVASLASWHAEGLNEAHAAASAL 251 Query: 265 -SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 Y + TQ P + + + + A R NLE+ +TL G +L +D T Sbjct: 252 LGYAEHTQGRALPHVQGLQVVRSGELIELPPATRRNLELTQTLRGEDSPTLFSLLDTCTT 311 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G G R + SP D + +RL++I ++ LK DV R +R+ + Sbjct: 312 GMGSRALKSWLLSPRRDRAQAASRLEAITQLRSGAQ--QTLRTQLKGCSDVERITARIAL 369 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 + P+++ ++ ++ +L +P L E L+ P + L + D+ Sbjct: 370 RQVRPRELVALQLTLQKA-ELLTPVDSAQIPL-LTTIFEDLQP-PLGCAELLGQCILDEP 426 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 RDGG + G DA LDE R+++ + L+++ T I NL+++ N G++I Sbjct: 427 AALIRDGGVINHGLDAELDELRAIQTNCDGFLLDLEIREKARTGIANLRVQFNKVHGFYI 486 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EVT + D + RQT+ N R+ T EL E++ +A AL E +E Sbjct: 487 EVTQGQLDKVPAD------YRRRQTLKNAERYITPELKTFEDKALSAQERALAREKWLYE 540 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L + + E +L ++ IA +D ALA + N+C P+ + GRHP+VE Sbjct: 541 QLLDQLQEFVPALSRLARAIAALDALCALAERSLTLNWCAPVFVKEPCIAIGQGRHPVVE 600 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 L + FIANDC L+ ++ ++TGPNMGGKST++RQ ALIV++A +GSYV Sbjct: 601 ARLAETGGGAFIANDCSLT-----GKSRMQMITGPNMGGKSTYMRQVALIVLLASVGSYV 655 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PAS +G +D + +R+G+AD++A+ +STFM+EM+E A IL+ AT S V++DEIGRGT+ Sbjct: 656 PASACRLGPIDAIHTRIGAADDVANAQSTFMLEMLEAAQILHAATPYSLVLMDEIGRGTS 715 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DGL++A YLH + L ATH+ ELT+ + N + +S I+FLH Sbjct: 716 TFDGLALAGGIAAYLHNKAQAFTLFATHYFELTEFAAQHHGAMNVHVSAVESGSDIVFLH 775 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESK 863 + PG A SYGI V KLAG+P V++ A L E + L+ + S Sbjct: 776 HIEPGPASKSYGIAVAKLAGVPAAVVNHARHALAALEAQQSQASAQVDLFAAPPEAPASG 835 Query: 864 NNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + DK + ++ D +SP AL+ LY +K Sbjct: 836 Q--TAIDK----ALASIDPDILSPREALEALYQLK 864 >gi|194397405|ref|YP_002038666.1| DNA mismatch repair protein MutS [Streptococcus pneumoniae G54] gi|238690807|sp|B5E385|MUTS_STRP4 RecName: Full=DNA mismatch repair protein mutS gi|194357072|gb|ACF55520.1| DNA mismatch repair protein HexA [Streptococcus pneumoniae G54] Length = 844 Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust. Identities = 290/883 (32%), Positives = 477/883 (54%), Gaps = 58/883 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEISLTSRNKNADNPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI+ G+++AI EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPYHSAQQYIDVLIEQGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSSK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEKEL 204 + +N+L+++ R ++ +A++D+ TG F ++ L+ +I + RE++ +L Sbjct: 121 PDSQNNFLVSIDREGNQFGLAYMDLVTGDFYVTGLLDFTLVCGEIRNLKAREVVLG-YDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E + L + V + F D + + R+A VE+TA++ + Sbjct: 180 SEEEEQILSRQMNLVLSYEKESFEDLHLLDLRLA---------------TVEQTASSKLL 224 Query: 265 SYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 Y+ +TQM KP I Y +I+ L +D A +++L+++ SG ++ SL +D Sbjct: 225 QYVHRTQMRELNHLKPVIRY----EIKDFLQMDYATKASLDLVENARSGKKQGSLFWLLD 280 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL I PL D +I R + + F+ + + + LK D+ R S Sbjct: 281 ETKTAMGMRLLRSWIHRPLIDKERIVQRQEVVQVFLDHFFERSDLTDSLKGVYDIERLAS 340 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G+ PKD+ + + S I + + P L + +L +P+ LE +S+ + Sbjct: 341 RVSFGKTNPKDLLQLATTLSSVPRIRAILEGMEQPT-LAYLIAQLDAIPE-LESLISAAI 398 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 + + P DGG +R G D +LD+ + + IA ++ K E + I LKI +N Sbjct: 399 APEAPHVITDGGIIRTGFDETLDKYXCVXREGTSWIAEIEAKERENSGISTLKIDYNKKD 458 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+ VT+S + F + T+ N RF T EL +E + A + +E Sbjct: 459 GYYFHVTNSQLGNVPA------HFFRKATLKNSERFGTEELARIEGDMLEAREKSANLEY 512 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F + + + + L +Q IA +D+ +LA++A+ Q+ RP + + ++ GRH Sbjct: 513 EIFMRIREEVGKYIQRLQALAQGIATVDVLQSLAVVAETQHLIRPEFGDDSQIDIRKGRH 572 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 +VEK + Q+ +I N ++ + L+TGPNM GKST++RQ A+ +MAQ+ Sbjct: 573 AVVEKVMGAQT---YIPNTIQMA-----EDTSIQLITGPNMSGKSTYMRQLAMTAVMAQL 624 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPA AH+ I D +F+R+G+AD+L SG+STFMVEM+E + ++ AT S ++ DE+G Sbjct: 625 GSYVPAESAHLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELG 684 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A + IEY+HE + L ATH+HELT L SL+ N + + + + Sbjct: 685 RGTATYDGMALAQSIIEYIHEHIGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQV 744 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 FLHK+ PG AD S GI V K+AGLP +++RA IL E + MR QT Sbjct: 745 TFLHKIEPGPADKSXGIHVAKIAGLPADLLARADKILXQLENQGTESPPPMR------QT 798 Query: 860 KESKNNLSKNDKL----FVEKIKCLNLDEMSPLTALKTLYAVK 898 ++S D+ + ++ L++ M+P+ + L +K Sbjct: 799 SAVTEHISLFDRAEEHPILAELAKLDVYNMTPMQVMNVLVELK 841 >gi|125719039|ref|YP_001036172.1| DNA mismatch repair protein MutS [Streptococcus sanguinis SK36] gi|166232147|sp|A3CR17|MUTS_STRSV RecName: Full=DNA mismatch repair protein mutS gi|125498956|gb|ABN45622.1| DNA mismatch repair protein hexA, putative [Streptococcus sanguinis SK36] Length = 849 Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust. Identities = 281/820 (34%), Positives = 448/820 (54%), Gaps = 46/820 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYPDAFLLFRMGDFYELFYDDAVNAAQILEISLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI L++ G+++AI EQ+E P EAK +V+R VV+++TPGT+ + Sbjct: 67 VPYHSAQQYIDVLVESGYKVAIAEQMEDPKEAK-----GVVKREVVQVITPGTVVDS--- 118 Query: 146 SPTDS--NYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEK 202 S DS N+L+A+ + +A++D+ TG F++++ L+ +I + RE++ Sbjct: 119 SKPDSANNFLVALDYSDGLYGLAYMDLVTGEFQVTSLEDFALVCGEIRNLKAREVVLG-- 176 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS-FSQVEKTAAA 261 +L E V Q N+ S ++ + D V G S +E+ AA Sbjct: 177 -------YALPEAEEQVLAGQMNLLL--SYVQTALDD------VQLLGEELSPMERQAAG 221 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 + Y+ +TQM + + +I+ L +D A +++L++ SG + SL +D Sbjct: 222 KLLEYVHRTQMRELSHLKKAQHYEIKDFLQMDYATKASLDLTENARSGKKHGSLYWLMDE 281 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGR+ I PL D +I+ R + + F+ + + + + LK D+ R SR Sbjct: 282 TKTAMGGRMLRSWIQRPLIDEARISQRQNVVEVFLDHFFERSDLTESLKGVYDIERLASR 341 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + G+ PK++ + + + + L+ L +E L +P+ L +SS +S Sbjct: 342 VSFGKTNPKELLQLAATL-GNVPQIKAILQGIGSPHLARLIEGLDPIPE-LAGLISSAIS 399 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D P +G ++ G D +LD+ R + + IA L++K + I NLKI +N G Sbjct: 400 PDAPHIITEGNIIQTGFDETLDQYRLVLREGTGWIAELEVKERANSGISNLKIDYNKKDG 459 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+ VT+S + F + T+ N RF T EL +E + A + +E E Sbjct: 460 YYFHVTNSQLA------HVPSHFFRKATLKNSERFGTEELARIEGEMLEAREKSANLEYE 513 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F + + + L +Q +A +D+ + A +A++Q+ RP+ ++ GRH Sbjct: 514 IFMRIREEAGKYIQRLQALAQTLAAVDVLQSFAAVAEQQHLVRPVFTAERRLQIEKGRHA 573 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + QS +I N L D + L+TGPNM GKST++RQ A+IVIMAQMG Sbjct: 574 VVEKVMGAQS---YIPNSILLDQETD-----IQLITGPNMSGKSTYMRQLAIIVIMAQMG 625 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 SYVPA A + + D +F+R+G+AD+L SG+STFMVEM+E + QA+ +S ++ DE+GR Sbjct: 626 SYVPAQSASLPLFDAIFTRIGAADDLVSGQSTFMVEMMEANRAIRQASERSLILFDELGR 685 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A IE++H + L ATH+HELT L +SL+ N + + + + Sbjct: 686 GTATYDGMALAQAIIEHIHHYTGAKTLFATHYHELTALEESLEHLENVHVATLEKDGQVT 745 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 FLHK+ PG AD SYGI V K+AGLP ++ RA IL E Sbjct: 746 FLHKIEPGPADKSYGIHVAKIAGLPEKLLERADSILSHLE 785 >gi|259650514|dbj|BAI42676.1| DNA mismatch repair protein [Lactobacillus rhamnosus GG] Length = 860 Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust. Identities = 296/828 (35%), Positives = 457/828 (55%), Gaps = 53/828 (6%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S TPMM+QY IK+ PD+ +FYR+GDFYELF DDA+ ++ L +TLT R K IPM Sbjct: 9 SDTPMMQQYNAIKAQYPDAFLFYRIGDFYELFNDDAIKGAQLLELTLTARNKSADDPIPM 68 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H Y+ LI G+++AICEQ+E P +A +V+R V++L+TPGT + + Sbjct: 69 AGVPHHAVQSYVDILIDHGYKVAICEQMEDPKKAV-----GMVKRAVIQLITPGTNIDIK 123 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEK 202 + +NY+ AV +A A+ D+STG K++ + L +++ + +EI+ E Sbjct: 124 AGAAKTNNYITAVLPHAAGYAFAYGDVSTGELKVTDLKSKFALQNELSALATKEIVVPE- 182 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 +L+ + L + ++V Q T + GS+ + T A Sbjct: 183 DLNDEDAAMLKKGERLLSVQQD-------------------TKPTSEGSYVSQDLTDPAE 223 Query: 263 A------ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILR-TLSGSREQSLL 315 A ++Y+ TQ + I + L +D ARSNL+IL+ + +G + +LL Sbjct: 224 AAVVQMLMAYLLNTQKRSLAHIQKAVAYQPSAYLEMDQDARSNLDILQNSRTGRKGDTLL 283 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T GGRL + + PL D I+ R + + +++ + +Q+ L D+ Sbjct: 284 SLLDATKTAMGGRLLKQWLERPLLDIDAISVRQNQVQDLLEHFFERSELQERLTKVYDLE 343 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEK 433 R R+ G +D+ ++ + I ++ K D +ELRG ++ + + + + Sbjct: 344 RLAGRVAFGTVNGRDLIQLQTSLDQVPAIQDVLSKLDDGSFKELRGKIDPVSDVAGLIRR 403 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 ++ + P DGG + G + LD R SK+ IA L+ + T I NL+I Sbjct: 404 SIEP----EPPISVTDGGLILRGYNEKLDAYRDAMKNSKQWIAELEASERKATGIHNLRI 459 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 ++N GYFIEVT S+ D + R+ +QT++N RF T EL + E I A S Sbjct: 460 RYNKVFGYFIEVTKSNL-----DKVPEGRYERKQTLTNAERFITPELKEKETLILEAQES 514 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + +E + F+ + + Q + L + + I+ +D+ + A +A+ +Y RP + T+ I Sbjct: 515 STALEYDLFQDIREKVKAQIKRLQHLAAQISALDVLQSFATVAENNHYVRPTMHAGTHDI 574 Query: 614 -VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 VK GRHP+VE L Q S +I ND + D + L+TGPNM GKST++RQ AL Sbjct: 575 NVKGGRHPVVEHVLGQDS---YIPNDVIMDRDTD-----MLLITGPNMSGKSTYMRQLAL 626 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 IVIMAQ GS+VPA A + I D++F+R+G+AD+LA+G STFMVEM+E + L+ AT S Sbjct: 627 IVIMAQAGSFVPADTADLPIFDQIFTRIGAADDLANGESTFMVEMLEANAALSHATASSL 686 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 ++ DEIGRGTAT DG+++A A IEYLH+ + L +TH+HELT LS SL + N + Sbjct: 687 ILFDEIGRGTATYDGMALAQAIIEYLHDHVHAKTLFSTHYHELTSLSDSLAKLKNVHVGA 746 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + + ++FLHK++PG AD SYGI V KLAGLP ++SRA ILK E Sbjct: 747 VEEHGNLVFLHKMMPGPADKSYGIHVAKLAGLPADLLSRADTILKQLE 794 >gi|325689185|gb|EGD31192.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK115] Length = 849 Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust. Identities = 283/820 (34%), Positives = 444/820 (54%), Gaps = 46/820 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYPDAFLLFRMGDFYELFYDDAVNAAQILEISLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI L++ G+++AI EQ+E P EAK +V+R VV+++TPGT+ + Sbjct: 67 VPYHSAQQYIDVLVESGYKVAIAEQMEDPKEAK-----GVVKREVVQVITPGTVVDS--- 118 Query: 146 SPTDS--NYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEK 202 S DS N+L+A+ + +A++D+ TG F++++ L+ +I + RE++ Sbjct: 119 SKPDSANNFLVALDYSDGLYGLAYMDLVTGEFQVTSLEDFALVCGEIRNLKAREVVLG-- 176 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS-FSQVEKTAAA 261 +L E V Q N+ S ++ + D V G S +E+ AA Sbjct: 177 -------YALPEAEEQVLAGQMNLLL--SYVQTALED------VQLLGEELSPMERQAAG 221 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 + Y+ +TQM + +I+ L +D A +++L++ SG + SL +D Sbjct: 222 KLLEYVHRTQMRELSHLKKAHHYEIKDFLQMDYATKASLDLTENARSGKKHGSLYWLMDE 281 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGR+ I PL D +I+ R + + F+ + + + LK D+ R SR Sbjct: 282 TKTAMGGRMLRSWIQRPLIDEARISQRQNVVEVFLDYFFERSDLTESLKGVYDIERLASR 341 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + G+ PKD+ + + + + L+ L +E L +P+ L +SS +S Sbjct: 342 VSFGKTNPKDLLQLAATL-GNVPQIKAILQGIGSPHLARLIEGLDPIPE-LAGLISSAIS 399 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D P +G ++ G D +LD+ R + + IA L++K I NLKI +N G Sbjct: 400 PDAPHIITEGNIIQTGFDETLDQYRLVLREGTGWIAELEVKERANCGISNLKIDYNKKDG 459 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+ VT+S + F + T+ N RF T EL +E + A + +E E Sbjct: 460 YYFHVTNSQLA------HVPSHFFRKATLKNSERFGTEELARIEGEMLEAREKSANLEYE 513 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F + + + L +Q +A +D+ + A +A++Q+ RPI ++ GRH Sbjct: 514 IFMRIREEAGKYIQRLQALAQTLAAVDVLQSFAAVAEQQHLVRPIFTGERRLQIEKGRHA 573 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + QS +I N L D + L+TGPNM GKST++RQ A+IVIMAQMG Sbjct: 574 VVEKVMGAQS---YIPNSILLDQETD-----IQLITGPNMSGKSTYMRQLAIIVIMAQMG 625 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 SYVPA A + + D +F+R+G+AD+L SG+STFMVEM+E + QA+ +S ++ DE+GR Sbjct: 626 SYVPAQSASLPLFDAIFTRIGAADDLVSGQSTFMVEMMEANRAIRQASERSLILFDELGR 685 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A IE++H + L ATH+HELT L SL+ N + + + + Sbjct: 686 GTATYDGMALAQAIIEHIHHYTGAKTLFATHYHELTALEDSLEHLENVHVATLEKDGQVT 745 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 FLHK+ PG AD SYGI V K+AGLP ++ RA IL E Sbjct: 746 FLHKIEPGPADKSYGIHVAKIAGLPEKLLERADSILSHLE 785 >gi|89900620|ref|YP_523091.1| DNA mismatch repair protein MutS [Rhodoferax ferrireducens T118] gi|122479353|sp|Q21XE3|MUTS_RHOFD RecName: Full=DNA mismatch repair protein mutS gi|89345357|gb|ABD69560.1| DNA mismatch repair protein MutS [Rhodoferax ferrireducens T118] Length = 882 Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust. Identities = 296/903 (32%), Positives = 460/903 (50%), Gaps = 76/903 (8%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM QY +K+ PD+L+FYRMGDFYELFF DA A+R L ITLT+RG+ G+ + M G Sbjct: 19 SPMMAQYFGLKADYPDTLLFYRMGDFYELFFADAEKAARLLNITLTQRGQSAGQPVVMAG 78 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+ + Y+ +LIK+G +AICEQ+ + K V R VVR+VTPGTLT+ +LL Sbjct: 79 VPFHSVDTYLARLIKLGESVAICEQV------GEVTGKGPVERKVVRVVTPGTLTDLELL 132 Query: 146 SPTDSNYLMAVAR-IRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 S + L+AV + R +AW+ ++ G ++ D L ++RI P EIIFS Sbjct: 133 SDKSESMLLAVHQGPRNTCGLAWLSVTQGEVHLAECAVDDLAQWVLRIAPGEIIFSAGTT 192 Query: 205 SHAEYKSLFETL-GNVAVA-QPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 E + L G V+V+ +P+ FD + E ++ +Q++ + A Sbjct: 193 PTFEARLRGAPLAGAVSVSVRPDWQFDAGLGEKKL--------------LAQLQAASLAP 238 Query: 263 AISY-IKKTQMVNKPTIGYPEREDIQSTLFIDSA--------------ARSNLEILRTLS 307 + + + +GY E Q+ I S R NLE+ +TL Sbjct: 239 WQAQDLPQAHAAAAALLGYAEHTQGQALTHIQSVRVQRSDELIDLPPTTRRNLELTQTLR 298 Query: 308 GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSI------NFFIQNPILI 361 G + +L +D +TG G RL + P D + RL++I + + Sbjct: 299 GEDQPTLFSLLDTCMTGMGSRLLKNWLLEPRRDRGEAQQRLNAIAALQSGDAHTSRAGVW 358 Query: 362 NPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAV 421 +++ LK S DV R +R+ + + P+++ ++ L L L RG Sbjct: 359 RQLREQLKGSTDVERITARIALRQVRPRELVALQ---------LTLQKTELLTHTTRGLE 409 Query: 422 EKLKKL------PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRII 475 L ++ P++ L+ + + RDGG + G DA LDE R+++ + Sbjct: 410 VYLTQISGHLLAPEACADLLARAIDPEPAVLVRDGGVIASGFDAELDELRAIQTNCDGFL 469 Query: 476 ASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRF 535 L+++ T I NL+++ N G+FIEVT + D + RQT+ N RF Sbjct: 470 LDLEVREKARTGIANLRVQFNKVHGFFIEVTQGQVDKVPDD------YRRRQTLKNAERF 523 Query: 536 TTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAIL 595 T EL E++ +A AL E +E + + + +L ++ +A +D AL Sbjct: 524 ITPELKAFEDKALSAQERALAREKWLYEQVLDQLQVFVPALTRVARALATLDALCALTER 583 Query: 596 AKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLL 655 + ++C P + GRHP+V+ L + SS FIAND + P + + ++ Sbjct: 584 SLTLDWCAPQFVKEPCLDITQGRHPVVQARLAETSSGAFIANDTRMG-PKQR----MQII 638 Query: 656 TGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMV 715 TGPNMGGKST++RQ A+IV++A MGSYVPAS +G +D + +R+G+AD+LA+ +STFM+ Sbjct: 639 TGPNMGGKSTYMRQIAVIVLLASMGSYVPASACRLGPIDAIHTRIGAADDLANAQSTFML 698 Query: 716 EMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHEL 775 EM+E A IL AT S V++DEIGRGT+T DGL++A + LH+ + L ATH+ EL Sbjct: 699 EMLEAAQILIAATPNSLVLMDEIGRGTSTFDGLALASSIATQLHDKTQAYTLFATHYFEL 758 Query: 776 TDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI 835 T+ N + +++ I+FLH++ PG A SYGIQV +LAG+P V+++A Sbjct: 759 TEFPAQHHAAINVHVSAAEAGRDIVFLHEIQPGPASKSYGIQVARLAGMPAAVLNQARQT 818 Query: 836 LKTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 L E NQ + L+ + D + LN D +SP AL+ LY Sbjct: 819 LAALESQATQNQAQVDLF------AAPPATETAADSAIETAVAALNPDNLSPREALEALY 872 Query: 896 AVK 898 +K Sbjct: 873 QLK 875 >gi|15617028|ref|NP_240241.1| DNA mismatch repair protein [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11386918|sp|P57504|MUTS_BUCAI RecName: Full=DNA mismatch repair protein mutS gi|25317153|pir||G84979 DNA mismatch repair protein mutS [imported] - Buchnera sp. (strain APS) gi|10039093|dbj|BAB13127.1| DNA mismatch repair protein mutS [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 802 Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust. Identities = 285/829 (34%), Positives = 478/829 (57%), Gaps = 54/829 (6%) Query: 17 DLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKH 76 +++ ++ + TPM++QY+ +KS PD L+FY+MGDFYELF++DA S L ITLTK+G Sbjct: 5 NIKNSMNNHTPMIKQYLSLKSQYPDMLLFYQMGDFYELFYEDAERISELLKITLTKKGYS 64 Query: 77 LGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTP 136 K IPM GVP H + +Y+ KL+K+G IAIC+Q + + KK+ L+ R VVR++TP Sbjct: 65 NHKIIPMAGVPCHKSEYYLSKLVKLGESIAICDQ-QKETDCKKK----LISRKVVRIITP 119 Query: 137 GTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST--SNHDRLISDIMRIDP 194 GT+T++ LL + N++ A+ + ++ + +D+S G F +S S+ D L+S+I R +P Sbjct: 120 GTVTDEVLLEENEDNFIAAIWKENNQFGYSVLDLSLGFFGVSKIFSSCD-LLSEIERTNP 178 Query: 195 REIIFSEKELSHAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFS 253 +EI++ E + +F + + ++ FD S + YN ++D FG Sbjct: 179 KEILYPEN------FSDVFLIESRKCIRKRSLLEFDLETSYKLLNLQYNTCSLDGFG--- 229 Query: 254 QVEKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG 308 +EK AA + Y+K M P I + ++ ++F++ + R +LEI + +SG Sbjct: 230 -IEKNNFVIRAAGCLLQYVKSMNMTLLPNIRQLKYNYMEDSIFMNFSTRKSLEITQNISG 288 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTR---LDSINFFIQNPILINPIQ 365 ++ +L ++ ++T G R+ + SPL + + R ++++ FF + +Q Sbjct: 289 EKKNTLSAILNKTVTSMGSRMLNRWLNSPLKNFKIVRNRHESVEALQFFYKE------LQ 342 Query: 366 KILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG--IRSGINILNLFLKNDLPEELRGAVEK 423 IL+ D+ R SRL + P D +R I ++++ +K+ +++R ++ Sbjct: 343 FILRQVNDLERIYSRLALRTASPHDFVRMRSTLEILPNLHLILKKIKSKHIKKIRLSIGY 402 Query: 424 LKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 +++ L+K +S S + RDGG + + + LDE RS++ SK I + + K Sbjct: 403 FEEVLCLLKKAISLKPSKCI----RDGGVIAELYNIELDELRSIKINSKEYIKNFEQKEK 458 Query: 484 EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDL 543 ++ I++ KIK N +GY+I+++ ++ K ++ QT+ N R++ L + Sbjct: 459 KKLMIESFKIKFNKIIGYYIQISKRHTHLIPK------YYVIIQTLKNTERYSVPLLKEY 512 Query: 544 ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCR 603 E ++ N+ +LL+E + + + N I E L N++ ++ +D+ + L+ A NY R Sbjct: 513 EEKVLNSEMRSLLLEKKLYAEIFNIIEPFLEKLQNSALALSELDVLVNLSERAISLNYTR 572 Query: 604 PIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 PI+ + + RHP+VE LK PFI N LS + ++ ++TGPNMGGK Sbjct: 573 PIMSEKYGISLLESRHPVVECFLKT----PFIKNSVFLS-----RTQRMIIITGPNMGGK 623 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 ST++RQ ALIVIMA +GS+VPA YA IG +DK+F+R+GSAD+L++G STFM+EM+E ++I Sbjct: 624 STYMRQIALIVIMAGIGSFVPARYALIGSIDKIFTRIGSADDLSNGYSTFMMEMMEISNI 683 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLK 783 L+ AT+ S V++DE+GRGT+T +GLS+AW+ YL N+ LL+THF ELT L + K Sbjct: 684 LHNATSNSLVLIDELGRGTSTNEGLSLAWSCSRYLININKSMTLLSTHFVELTKLEEKEK 743 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 N S+ I FL+K+ GI+ SYGI V L+GLP++V+ A Sbjct: 744 FVKNFHFSAIKSDLHIAFLYKIKNGISKKSYGISVASLSGLPDSVLEDA 792 >gi|295692267|ref|YP_003600877.1| DNA mismatch repair protein muts [Lactobacillus crispatus ST1] gi|295030373|emb|CBL49852.1| DNA mismatch repair protein mutS [Lactobacillus crispatus ST1] Length = 858 Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust. Identities = 270/816 (33%), Positives = 447/816 (54%), Gaps = 36/816 (4%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY EIK PD+ +FYR+GDFYELF DDA+ ++ L +TLT R IPM GVP Sbjct: 1 MMEQYYEIKKQYPDAFLFYRVGDFYELFEDDAVKGAQILELTLTHRSNRTKNPIPMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 + Y+ L++ G+++A+CEQ+E P +AK +V+R +++LVTPGT+ + Sbjct: 61 HMAVDTYVNTLVEKGYKVALCEQLEDPKKAK-----GMVKRGIIQLVTPGTMMNEGPNDA 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKELSH 206 DSNYL +V ++ + + + D+STG I+ + D + ++++ + RE++++ Sbjct: 116 KDSNYLTSVITTKSGFGLTYSDLSTGEIYATHLKSFDAVSNELLSLRTREVVYNG---PL 172 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISY 266 E F N+ V++P S + N+T + EK A + Y Sbjct: 173 TEQNKDFMHKANITVSRPTPIEGEHAEISYVEQ--NLT--------NGAEKEATRQLVGY 222 Query: 267 IKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSITGA 325 + TQ + + + ++ L + ++NLE++ + +G + SL +D + T Sbjct: 223 LLSTQKRSLAHLQIAKSYEVNQYLQMSHTVQNNLELVASAKTGKKMGSLFWVLDKTHTAM 282 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 GGRL + +A PL + +IN R + + + LK D+ R R+ G Sbjct: 283 GGRLLKQWLARPLLNMDEINHREEMVQALLDGYFTRENAVDALKGVYDLERLTGRIAFGN 342 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPT 445 +++ + +++ IL+ ++D + L +K+ L + + + ++S + D P Sbjct: 343 VNARELLQLSRSLQAVPVILDALEQSD-SDILVDFAKKIDPL-KGVAEMITSTIVKDPPV 400 Query: 446 FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEV 505 +GG ++ G D LD R + K+ +A ++ ++T I NLK+ +N GY+I+V Sbjct: 401 LTTEGGLIQGGVDPQLDRYRDAMNNGKKWLAEMEADERQKTGIDNLKVGYNKVFGYYIQV 460 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEIL 565 ++ + S + DR+ +QT++N R+ T EL + EN I A + +E + F L Sbjct: 461 SNGNKSKV-----PLDRYTRKQTLTNAERYITPELKEHENLILEAQTRSTDLEYDLFVKL 515 Query: 566 SNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID-NSTNFIVKDGRHPIVEK 624 + + +L +A +D+ A +A++ NYCRP ++ + V +GRHP+VEK Sbjct: 516 REDVKKYIPALQKLGGQLAALDVYCGFATVAEQNNYCRPTFHADNQDINVTNGRHPVVEK 575 Query: 625 TLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684 + ++ +I ND + ++L+TGPNM GKST++RQ ALI IMAQ+GS+VP Sbjct: 576 VM---TAGSYIPNDVKMD-----EGTNIYLITGPNMSGKSTYMRQMALIAIMAQVGSFVP 627 Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744 A A + I D++F+R+G+AD+L SG+STFMVEM E L AT +S V+ DEIGRGTAT Sbjct: 628 ADSADLPIFDQIFTRIGAADDLISGQSTFMVEMSEANEALQYATKRSLVLFDEIGRGTAT 687 Query: 745 LDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHK 804 DG+++A A ++YLH+ + L ATH+HELT + ++L N + ++ N +IFLHK Sbjct: 688 YDGMALAGAIVKYLHDKVGAKALFATHYHELTVMDETLDHLKNIHVGATEENGKLIFLHK 747 Query: 805 VIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 ++PG AD SYGI V +LAGLP V+ A +LK E Sbjct: 748 ILPGPADQSYGIHVAQLAGLPRNVLREATKLLKRLE 783 >gi|293400026|ref|ZP_06644172.1| DNA mismatch repair protein MutS [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306426|gb|EFE47669.1| DNA mismatch repair protein MutS [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 843 Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust. Identities = 283/883 (32%), Positives = 488/883 (55%), Gaps = 57/883 (6%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 + TPMM QY+E+K + D ++FYR+GDFYE+FFDDA +AS+ L + LT + + + +PM Sbjct: 6 TYTPMMTQYLELKEKHKDEIIFYRLGDFYEMFFDDAKIASQELDLVLTGKNAGVEERVPM 65 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CG+P H AN YIQ+LI+ G+++AI EQ+E+P AK LV+R+++++VTPGT+ D+ Sbjct: 66 CGIPHHAANGYIQRLIQKGYKVAIVEQMENPATAK-----GLVKRDILKIVTPGTIM-DE 119 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRI----DPREIIF 199 + + Y++++ + A+ +++TG + D+ + I ++ + EI+ Sbjct: 120 VNDEKATVYIVSLHDYQFGLAVVLCEMTTGEMRAQLI--DKQVMAIQKVLLGNNVAEIVI 177 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESR---IADYYNITTVDTFGSFSQVE 256 EK + + E + + ++ + D +I E+ I+D + FG + Sbjct: 178 EEK--FDKKIVKMIEDMDRITIS---YYQDAAIKEAYEHLISDIEDDRIRHAFGILT--- 229 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLL 315 +Y+ +TQ N + + E+ L +D + NLE+ ++ + S+ +L Sbjct: 230 --------NYLDETQRRNMAHLNHVEQVYENEFLQMDYNTKQNLELTASIRNNSKSLTLW 281 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + G RL + I PL D+ IN RLD+I + N I + +++ L D+ Sbjct: 282 SFLDKCRSSMGSRLLKKWIEYPLVDTKMINKRLDAIEYLNDNFITKDELKEHLSFVYDME 341 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R +R+ G P+DI + + I +LF + E + + Q L + + Sbjct: 342 RLSARVAYGSANPRDILRLIKTLEHAPMIFDLFKDCNAYSEFQTI-----DVCQELYEVI 396 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + ++ P +DGG +G LD+ R + K I +L+ K E T +K+LKI + Sbjct: 397 DGAIVENPPVTLKDGGVFVEGYHEELDQVRKIGKNGKNWILALENKERERTGVKSLKIGY 456 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+IEVT ++ S +K++ ++ +QT++N RF T EL + E+ I +A ++ Sbjct: 457 NRVFGYYIEVTKTNLSQIKEEF----GYVRKQTLANAERFITQELKEQEDAIVHAQERSI 512 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E E FE L + I L + + ++ ID ALA ++ E Y RP ++ Sbjct: 513 RLENELFENLLDKIRVYLPKLHDLAIALSTIDALYALAEISSENGYTRPHFHKEHTVYME 572 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 + RHPI++K +K + +++ND + D + ++TGPNMGGKST++RQ AL+VI Sbjct: 573 EARHPILDKIMK---TTRYVSNDLKMQEDQD-----IMIITGPNMGGKSTYMRQTALLVI 624 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+G YVPA A + I D++F+R+G++D++ SG+STFMVEM+E + L A+ S ++ Sbjct: 625 MAQIGCYVPARKAELPIFDQIFTRIGASDDIMSGQSTFMVEMMEANNALKHASANSLILF 684 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DG+++A A IEY+ + + L +TH+HELT + + N + V + Sbjct: 685 DEIGRGTSTYDGMALAQAMIEYILRNIKAKTLFSTHYHELTQMEERNPGILNVHVDVHEE 744 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 +E + FL++VI G AD SYGI V +LA LP +V+ RA IL E ++ + P Sbjct: 745 DEKVTFLYRVIEGKADKSYGINVARLAHLPGSVLDRAQQILDNLEL---NDNPIQNIVGP 801 Query: 856 EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + KE+ ++ +E++ ++L++M+P+ A++ LY +K Sbjct: 802 HVIEKENPKHVE-----IIEQLDKIDLNKMTPIEAMQLLYELK 839 >gi|257420392|ref|ZP_05597382.1| DNA mismatch repair protein mutS [Enterococcus faecalis X98] gi|257162216|gb|EEU92176.1| DNA mismatch repair protein mutS [Enterococcus faecalis X98] gi|315154585|gb|EFT98601.1| DNA mismatch repair protein MutS [Enterococcus faecalis TX0043] Length = 858 Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust. Identities = 291/897 (32%), Positives = 483/897 (53%), Gaps = 71/897 (7%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM QY+ IK+ D+ +FYR+GDFYELF++DA+ A++ L +TLT R ++ IPMC Sbjct: 7 NTPMMEQYLSIKAQYKDAFLFYRLGDFYELFYEDAINAAQILELTLTSRNRNADDPIPMC 66 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H A YI LI+ G+++AICEQ+E P + K +V+R VV+LVTPGT+ + Sbjct: 67 GVPYHAAQGYIDTLIEQGYKVAICEQVEDP-----KTTKGMVKREVVQLVTPGTVMNSKG 121 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 L D+NYL AV ++ A++D+STG K + ++ + ++++ + +E++ Sbjct: 122 LEAKDNNYLTAVLTDGNQFGFAYVDLSTGELKTAVLADEEGVLNEASALQTKEMVLG--- 178 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + E+L + N+ F + A++ +T + +E Sbjct: 179 ------SGIPESLKENLSLRLNIIFSTQETVEENAEFSFLTN----ELINPLEIEITGKL 228 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 +SY+ TQ + I L +D ++ NLE+ +++ +G ++ +LL +D + Sbjct: 229 LSYLSVTQKRSLSHIQKAVEYQPDHFLKMDHYSKFNLELSQSIRTGQKKGTLLWLLDETK 288 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T GGRL + + PL +I R + + + +Q L + D+ R R+ Sbjct: 289 TAMGGRLLKQWLDRPLIQERQIKARQEMVQSLLNAYFERLDLQAALTNVYDLERLAGRVA 348 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLK------NDLPEELRGAVEKLKKLPQSLEKTLS 436 G +D+ +R + I L + +DL +L VE L L ++ Sbjct: 349 FGSVNGRDLIQLRTSLEQVPTIRQLIVGINQGEWDDLLVDL-NPVEDLVAL-------IA 400 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + ++++ P +G ++DG + LDE R K+ +A L+ K +ET IKNLKI +N Sbjct: 401 TAINEEAPLQITEGNVIKDGYNDQLDEYRDAMRNGKQWLAELEAKERQETGIKNLKIGYN 460 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GYFIE+T S+ + L++ ++ +QT++N RF T EL +LE I A ++ Sbjct: 461 RVFGYFIEITKSNLANLEEG-----KYERKQTLANAERFITPELKELERLILEAEEKSVE 515 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII-DNSTNFIVK 615 +E + F + + + L ++ I+ +D+ + A +++ Y RP + N+ N + Sbjct: 516 LEYQLFLAVREQVKTNIDRLQTLAKTISAVDVLQSFATISERYQYVRPTLRSNTKNLAIV 575 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 +GRHP+VEK L Q +I N ++ D + L+TGPNM GKST++RQ AL V+ Sbjct: 576 EGRHPVVEKVLGHQE---YIPNSIRMNPETD-----ILLITGPNMSGKSTYMRQLALTVV 627 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+G +VPA A + I D++F+R+G++D+L +G+STFMVEM+E L AT S ++ Sbjct: 628 MAQIGCFVPAESAEMPIFDQIFTRIGASDDLIAGQSTFMVEMMEANQALRHATPNSLILF 687 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGTAT DG+++A A IEY+H + + L +TH+HELT L ++L N + + Sbjct: 688 DELGRGTATYDGMALAQAIIEYIHREVQAKTLFSTHYHELTVLDETLTGLKNIHVGAVEK 747 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--------------K 841 + ++FLHK++ G AD SYGI V K+AGLP+ ++ RA IL E Sbjct: 748 DGEVVFLHKMMEGPADKSYGIHVAKIAGLPSPLLERAATILSALEAEETTIPSSVHHEEV 807 Query: 842 LYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 H + + + E+ T+E LS ++ +K +NL EM+PL AL L+ ++ Sbjct: 808 SEVHEETEQLSLFKEVSTEE----LS-----VIDTLKKMNLLEMTPLDALSMLHQLQ 855 >gi|116627015|ref|YP_819634.1| DNA mismatch repair protein MutS [Streptococcus thermophilus LMD-9] gi|122268380|sp|Q03MY4|MUTS_STRTD RecName: Full=DNA mismatch repair protein mutS gi|116100292|gb|ABJ65438.1| DNA mismatch repair protein MutS [Streptococcus thermophilus LMD-9] Length = 852 Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust. Identities = 275/820 (33%), Positives = 455/820 (55%), Gaps = 46/820 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKNYPDAFLLFRMGDFYELFYDDAVKAAQILEISLTSRNKNADNPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI L+++G+++AI EQ+E P +A +V+R VV+++TPGT+ + Sbjct: 67 VPYHSAQAYIDVLVEMGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVVDS--- 118 Query: 146 SPTDS--NYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEK 202 S DS N+L+A+ ++ + + ++++D+STG F + + S+I + RE++ Sbjct: 119 SKPDSANNFLVAIDKVGSRFGLSYMDVSTGEFFATELDDFSSVCSEIQNLKAREVVVG-- 176 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAA 261 L ET + + ++ S+ + Y+ V G S + +E + A+ Sbjct: 177 -------YDLLET------DEQVLVNQLNLLLSKETEGYD--DVHLIGNSLTDLESSVAS 221 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 + Y+ +TQM + + +I+ L + A +S+L++L +G + SL +D Sbjct: 222 KLLQYVHRTQMRELSHLQKAQHYEIKDYLQMSYATKSSLDLLENARTGKKHGSLFWLLDK 281 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G RL I PL + I R + I F+ N + + + LK D+ R SR Sbjct: 282 TKTAMGMRLLRTWIDRPLVNQASIIERQNIIQVFLDNFFERSDLTESLKGVYDIERLASR 341 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + G+ PKD+ + + + + I+ L++ + L G +++L LP+ LE + S + Sbjct: 342 VSFGKANPKDLIQLGHTL-AQVPIIKAILESFNDDALSGLLQELDALPE-LESLIRSAID 399 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D P +GG +RDG D +LD+ R + + IA ++ K E + I LKI +N G Sbjct: 400 PDAPATITEGGIIRDGFDETLDKYRKVMSEGTSWIADIEAKEREASGITTLKIDYNRKDG 459 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+ VT+S+ S++ D F + T+ N RF T EL +E + A + +E + Sbjct: 460 YYFHVTNSNLSLVP------DHFFRKATLKNSERFGTAELAKIEGEMLEAREKSSTLEYD 513 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F + + + L + ++ IA +D+ +LA+ A+ +Y RP+ ++ + GRH Sbjct: 514 IFMRVREQVERYIDRLQSLAKAIATVDVLQSLAVTAETNHYVRPVFNDEHRIAIDRGRHA 573 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + Q +I N + + L+TGPNM GKST++RQ AL V+MAQMG Sbjct: 574 VVEKVMGVQE---YIPNTITFDSQTN-----IQLITGPNMSGKSTYMRQLALSVVMAQMG 625 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 +YVPA + + D +++R+G+AD+L SG+STFMVEM+E + +AT S +I DE+GR Sbjct: 626 AYVPADSVDLPVFDAIYTRIGAADDLISGQSTFMVEMMEANQAIKRATPNSLIIFDELGR 685 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A + IE++H+ + + ATH+HELT LS SL N + + + + Sbjct: 686 GTATYDGMALAQSIIEFIHDKVGAKTMFATHYHELTALSNSLTHLVNVHVATLEKDGEVT 745 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 FLHK++ G AD SYGI V K+AGLP +++RA IL E Sbjct: 746 FLHKIVDGPADKSYGIHVAKIAGLPTDLLNRADTILTQLE 785 >gi|288906383|ref|YP_003431605.1| DNA Mismatch repair ATPase (MutS family) [Streptococcus gallolyticus UCN34] gi|306832430|ref|ZP_07465583.1| DNA mismatch repair protein MutS [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325979397|ref|YP_004289113.1| DNA mismatch repair protein mutS [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288733109|emb|CBI14690.1| DNA Mismatch repair ATPase (MutS family) [Streptococcus gallolyticus UCN34] gi|304425470|gb|EFM28589.1| DNA mismatch repair protein MutS [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325179325|emb|CBZ49369.1| DNA mismatch repair protein mutS [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 856 Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust. Identities = 293/887 (33%), Positives = 476/887 (53%), Gaps = 54/887 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY+++K PD+ + +RMGDFYELF+DDA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYLDVKKDYPDAFLLFRMGDFYELFYDDAVKAAQILEISLTSRNKNADNPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI L+++G+++AI EQ+E P +A +V+R VV+++TPGT + Sbjct: 67 VPYHSAQQYIDVLVEMGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTAVDSS-- 119 Query: 146 SPTDSN-YLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKE 203 P ++N +L+A+ + +A++D+STG F S S+ L S+I+ + RE++ E Sbjct: 120 KPDNANNFLVAIDSDGKTFGLAYMDVSTGEFFSTSLSDFTSLRSEILNLKAREVVVG-YE 178 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 LS E SL V Q N+ S + R Y ++ +D + +E +AA Sbjct: 179 LSETEQHSL--------VKQLNLLL--SFEQER---YEDVHLIDP--DLTALEISAAEKL 223 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSI 322 + Y+ TQ + +I+ L + +S+L++L S++ SL +D + Sbjct: 224 LQYVHTTQKRELSHLQKLVHYEIKDYLQMSYTTKSSLDLLENARTSKKHGSLYWLLDETK 283 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G RL I PL + +I R + + F+ N + + LK D+ R SR+ Sbjct: 284 TAMGMRLLRNWIDRPLVNQAQIEERQNIVQVFLDNFFERSDLTDSLKGVYDIERLASRVS 343 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 G+ PKD+ + + + + + L++ L V + LP+ LE + S ++ D Sbjct: 344 FGKANPKDLLQLGHTL-AQVPTIKAILESFESPHLDKLVNNIDTLPE-LESLIRSAIAPD 401 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P +G +R G D +LD+ R + + IA ++ K + I NLKI +N GY+ Sbjct: 402 APAVITEGSIIRTGFDETLDKYRKVMREGTSWIAEIEAKERAASGITNLKIDYNKKDGYY 461 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 VT+S+ S++ D F + T+ N RF T EL +E + A + +E + F Sbjct: 462 FHVTNSNLSLVP------DYFFRKATLKNSERFGTAELAKIEGEMLEAREQSASLEYDIF 515 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 + + L + ++ I+ +D+ +LA++A+ +Y RP ++S ++ GRH +V Sbjct: 516 MRVRGQVERYITRLQDLAKAISTVDVLQSLAVVAENNHYVRPTFNDSHEIKIEKGRHAVV 575 Query: 623 EKTLKQQSSKP-FIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 EK + Q P I D D++ + L+TGPNM GKST++RQ AL VIMAQMGS Sbjct: 576 EKVMGTQEYIPNTITFDADIN---------IQLITGPNMSGKSTYMRQLALTVIMAQMGS 626 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 YV A ++ + D +F+R+G+AD+L SG+STFMVEM+E + +A++QS ++ DE+GRG Sbjct: 627 YVAAESVNLPVFDAIFTRIGAADDLISGQSTFMVEMMEANQAIKRASSQSLILFDELGRG 686 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 TAT DG+++A + IEY+H + + ATH+HELT LS SL N + + N + F Sbjct: 687 TATYDGMALAQSIIEYIHNHIGAKTMFATHYHELTALSTSLTHLINVHVATLEKNGDVTF 746 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK- 860 LHK+ G AD SYGI V K+AGLP ++ RA IL E Q + I K Sbjct: 747 LHKIAEGPADKSYGIHVAKIAGLPEELLQRADSILTNLESGAAQLQLTPEVEVGPITVKS 806 Query: 861 ESKNNLSKNDKLF---------VEKIKCLNLDEMSPLTALKTLYAVK 898 E +++ LF +E +K ++L ++P+ A+ +Y +K Sbjct: 807 EVAEPVAEQLSLFADDSSNQEVIEALKKVDLMNLTPMQAMNVIYELK 853 >gi|126697173|ref|YP_001092059.1| DNA mismatch repair protein MutS [Prochlorococcus marinus str. MIT 9301] gi|189083171|sp|A3PFD3|MUTS_PROM0 RecName: Full=DNA mismatch repair protein mutS gi|126544216|gb|ABO18458.1| putative DNA mismatch repair protein [Prochlorococcus marinus str. MIT 9301] Length = 913 Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust. Identities = 308/861 (35%), Positives = 476/861 (55%), Gaps = 76/861 (8%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TP+M+ Y+ +K N D L+ YR+GDF+E FF+DA+L S L ITLT + GK +GK IPM Sbjct: 86 TPVMKHYVTLKEENKDRLLLYRLGDFFECFFEDAVLISNLLEITLTSKDAGKEIGK-IPM 144 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSL-VRRNVVRLVTPGTLTED 142 GVP H + Y LIK + + IC+Q+E K GN ++R + R++TPGT+ E+ Sbjct: 145 AGVPHHAMDRYCADLIKKNYSVVICDQLE-----KSSGNYGTPIKRGITRIITPGTVIEE 199 Query: 143 QLLSPTDSNYLMAV------ARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPR 195 +L +N++ A+ + EW I+ D+STG + + + +L +I+++D Sbjct: 200 GMLIAKKNNWITAIYLSEENSNESYEWGISKADVSTGELITLEGQSLSKLFDEIIKLDSS 259 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESR--IADYYNITTVDTFGSFS 253 EII + + K + V+Q F I+E+ I +Y+ I ++ G + Sbjct: 260 EIIVGSNAVRNLLIKGNSQI--TYTVSQETNF---GINEANYLIKNYFQIANLEGIGLKN 314 Query: 254 QVEKTAAAAAI-SYIKKTQMVN-------KPTIGYPEREDIQSTLFIDSAARSNLEILRT 305 T + + +Y++K N K ++ +P+ + + L ID + NLEI T Sbjct: 315 LKNATRSLGGLLNYLEKINPSNLDKDSSVKISLDFPQIQYGHNKLIIDYQTQKNLEIKNT 374 Query: 306 LSGSREQ----SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILI 361 RE SLL +ID + T G R I SPL + +I R + I F ++ L Sbjct: 375 ---QRENNYVGSLLWSIDRTYTCMGARCLRRWIDSPLLNVNEIYKRQNIITNFFESKKLR 431 Query: 362 NPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSG---INILNLFLKNDLP---E 415 Q +L++ D+ R R G P+D+ I +G++ +I+ LF K DLP + Sbjct: 432 TDTQNLLRAMGDLERLAGRACAGHASPRDLIAIAEGLKKLPRLKSIIELF-KYDLPNWTD 490 Query: 416 ELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRII 475 +L E L +L T+S L ++ P +GG + DG D LD R+L D + Sbjct: 491 QLINIDEGLLELAD----TISFKLVENPPLSISEGGMIHDGVDNILDGLRNLMDDYSEWL 546 Query: 476 ASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRF 535 +LK + +KI NLKI+ + N GY+I + S ++ + +I RQT++N R+ Sbjct: 547 NKEELKERKISKISNLKIQFHKNFGYYISINKSKVNL------APQHWIKRQTLTNEERY 600 Query: 536 TTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAIL 595 T E+ + EN+I + A E E F L N + E+++ + + ++ IA +D + L+I Sbjct: 601 ITSEIKNKENKIFQIKSRASSKEYEIFCELRNIVAEKTKQIRSIAKSIASLDALLGLSIT 660 Query: 596 AKEQNYCRPII--------DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDK 647 + E N+ +P++ NST I GR+PIVE+ L S K F+AND + Sbjct: 661 SIENNFIKPLLIPINDSMTKNSTKIIA--GRNPIVEQLL---SDKKFVANDISF-----E 710 Query: 648 NSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLA 707 ++ KL +LTGPN GKS F+RQ LI I+AQ+GS+VPA+ A I I D++F+R+G+ D+ + Sbjct: 711 DNQKLIILTGPNASGKSCFIRQLGLIQILAQIGSFVPANNAEIKIADRIFTRIGAVDDQS 770 Query: 708 SGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGL 767 SG+STFMVEM ETASILNQAT+ S V+LDEIGRGT+T DGLSIAW+ EYL + +C + Sbjct: 771 SGQSTFMVEMSETASILNQATSNSLVLLDEIGRGTSTFDGLSIAWSVSEYLAKKIQCNTI 830 Query: 768 LATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNT 827 ATH+HEL L S K N + V +++ +IF H+++ G ++ SYGI+ KLAG+P Sbjct: 831 FATHYHELNYLKNSNKNIQNFQVLVEQNDDQLIFSHRIVRGGSNKSYGIEAAKLAGVPKE 890 Query: 828 VISRAYDILKTFE---KLYHH 845 VI +A +L + E KL H+ Sbjct: 891 VIEKAKSVLNSLEENNKLNHN 911 >gi|256819680|ref|YP_003140959.1| DNA mismatch repair protein MutS [Capnocytophaga ochracea DSM 7271] gi|256581263|gb|ACU92398.1| DNA mismatch repair protein MutS [Capnocytophaga ochracea DSM 7271] Length = 860 Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust. Identities = 296/889 (33%), Positives = 474/889 (53%), Gaps = 53/889 (5%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + TP+M+QY +IKS PD+L+ +R+GDFYE F +DA+ A+ L I LT R + Sbjct: 1 MAKETPLMKQYNQIKSKYPDALLLFRVGDFYETFGEDAVKAAHTLDIVLTNRNNGTERS- 59 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 + G P H+ N Y+ KL+K G+R+AIC+Q+E P + K +V+R V LVTPG Sbjct: 60 ELAGFPYHSINTYLPKLVKAGYRVAICDQLEDP-----KLVKGIVKRGVTELVTPGVALN 114 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 D +L +N+L +V + A++D+STG F ++ + + P E++ ++ Sbjct: 115 DDILQSKSNNFLASVWLGKQSCGAAFLDVSTGEFLVAQGEKTYIDKLLQNFRPSELLVAK 174 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 ++ E+ F + + VF D ++ + ++ ++ FG E A Sbjct: 175 QQ--KKEFAEHFGDDFHCFYLEDWVFKD-DYAQQVLTKHFQTNSLKGFGVDELTEAILTA 231 Query: 262 AAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 AI Y+ +TQ I +R ++ +++D NLE L + + SLL ID Sbjct: 232 GAILYYLSETQHHQLQHITAIQRIAEEAYVWLDKFTIRNLE-LYVGNTTPSVSLLDVIDK 290 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 +++ G R +A PL KI R + +++F+++ ++ ++ L D+ R +S+ Sbjct: 291 TLSPMGSRTLKRWLALPLKKLDKIRQRHEVVDYFLKHIDVLEQVKTALSHMGDIERLISK 350 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + + P+++ +R + I ++ E L +KL Q L ++ LS Sbjct: 351 VATLKINPREVVQLRASLEH-IPLIKQLCLASANESLTLLGDKLHSCEQ-LSARIAETLS 408 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 +D P G + G A LDE R L K + L L+ ++ T I +LKI NN G Sbjct: 409 EDAPVNIAKGNAIAKGFSAELDELRGLSHSGKSYLDDLLLRESQRTGIPSLKIDSNNVFG 468 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IEV ++ + D +I +QT+ N R+ T EL + E +I A +E Sbjct: 469 YYIEVRNTHKDKVPPD------WIRKQTLVNAERYITGELKEYETKILGAEEKIAQLEQS 522 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 + L I E + + +I +D + A LA E NY RP ++ +KDGRHP Sbjct: 523 LYAELIAFISEYIGQVQTNATLIGQLDCLCSFATLAMENNYHRPEMNEGYAIEIKDGRHP 582 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 ++EK L P+IAND L D+ ++ ++TGPNM GKS LRQ ALIV++AQ+G Sbjct: 583 VIEKQLP--VGTPYIANDVYL----DRERQQIIMITGPNMSGKSAILRQTALIVLLAQIG 636 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA+ A +GIVDK+F+RVG++DN++ G STFMVEM E A ILN +++S V+LDEIGR Sbjct: 637 SFVPAATAQLGIVDKIFTRVGASDNISMGESTFMVEMNEAALILNNISDRSLVLLDEIGR 696 Query: 741 GTATLDGLSIAWATIEYLHE-TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 GT+T DG+SIAWA EYLHE ++ + L ATH+HEL ++S+ +R N + V ++ + + Sbjct: 697 GTSTYDGISIAWAIAEYLHEHPSKAKTLFATHYHELNEMSEQFERIKNYNVSVKETKDSV 756 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN-----------QK 848 +FL K+ G + HS+GI V K+AG+P VI +A +LK E+ HN QK Sbjct: 757 LFLRKLTEGGSAHSFGIHVAKMAGMPQYVIQKANKMLKKLEE--SHNVVPTAEVVKNAQK 814 Query: 849 DMRLYYPEIQTKESKNNLSKNDKL---FVEKIKCLNLDEMSPLTALKTL 894 +M+L + ++ ND L E + L+++ ++P+ AL L Sbjct: 815 EMQLSFFDM-----------NDPLLEALKEDLLSLDINTLTPVEALMKL 852 >gi|3024198|sp|P70755|MUTS_AQUPY RecName: Full=DNA mismatch repair protein mutS gi|1619907|gb|AAB16998.1| DNA mismatch repair protein [Aquifex pyrophilus] Length = 855 Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust. Identities = 272/821 (33%), Positives = 471/821 (57%), Gaps = 39/821 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD-I 81 K TPM+ QY + KS+ PD L+ +R+GDFYELF++DA++ S+ LG+ LT R G++ I Sbjct: 6 KELTPMLAQYHQFKSMYPDCLLLFRLGDFYELFYEDAVVGSKELGLVLTSRPAGKGRERI 65 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+AN+YI KL+ G+++AICEQ+E P +AK +V+R+V+R++TPGT E Sbjct: 66 PMCGVPYHSANNYIAKLVNKGYKVAICEQVEDPSKAK-----GIVKRDVIRVITPGTFFE 120 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 ++ L ++ R + ++++++S G F + + LI + + + RE++ + Sbjct: 121 ------RETGGLCSLYRKGKSYLVSYLNLSVGEFIGAKVKEEELIDFLSKFNIREVLVKK 174 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 E + E + + + + F E + DY + ++ FG + + Sbjct: 175 GE----KLPEKLEKVLKLHITELEEEFFEEGKEELLKDY-GVPSIKAFGFQDEDLSLSLG 229 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 A Y K TQ P I P+ + + +D A LEI ++ G ++ SL K +D + Sbjct: 230 AVYRYAKATQKSFTPLIPKPKPYVDEGYVKLDLKAVKGLEITESIEGRKDLSLFKVVDRT 289 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +TG G R R+ +P +I +++ I ++N I+K L+ D+ R +SR+ Sbjct: 290 LTGMGRRRLRFRLLNPFRSIERIRKVQEAVEELINKREVLNEIRKTLEGMSDLERLVSRI 349 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 P+++ +++ +R + + L +++ +E+ G++ L K+ ++KTL Sbjct: 350 SSNMASPRELIHLKNSLRKAEELRKILSLLDSEIFKEIEGSLLNLNKVADLIDKTLV--- 406 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 DD P ++GG ++ G +A LDE R +R+ +++++ + K +ET I++LKI +N + Sbjct: 407 -DDPPLHVKEGGLIKPGVNAYLDELRFIRENAEKLLKEYEKKLKKETGIQSLKIGYNKVM 465 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IEVT ++ + + F RQT+SN R+TT EL LE +I +A +E Sbjct: 466 GYYIEVTKANVKYVP------EHFRRRQTLSNAERYTTEELQRLEEKILSAQTRINELEY 519 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E + L ++++ + + N + +I +D +LA LA E+ + +P + I+++G+H Sbjct: 520 ELYRELREEVVKELDKVGNNATLIGEVDYIQSLAWLALEKGWVKPEVHEGYELIIEEGKH 579 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P++E + +K ++ ND L+ + ++TGPNM GKS+++RQ ++ ++A Sbjct: 580 PVIE-----EFTKNYVPNDTKLT-----EEEFIHVITGPNMAGKSSYIRQVGVLTLLAHT 629 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS++P A I +VD +F+R+GS D LA G STFM EM++ ++ILN AT +S +ILDE+G Sbjct: 630 GSFLPVKSARIPLVDAIFTRIGSGDVLALGVSTFMNEMLDVSNILNNATKRSLIILDEVG 689 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGT+T DG++I+ A ++Y+ E + LLATH+ ELT+L + +K N ++V +++EGI Sbjct: 690 RGTSTYDGIAISKAIVKYISEKIGAKTLLATHYLELTELERKVKGVKNYHMEVEETDEGI 749 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 FL+ + G A S+GI V KLAGLP V+ A ILK E Sbjct: 750 RFLYILKEGRAKGSFGIDVAKLAGLPEEVVREAKKILKELE 790 >gi|332878724|ref|ZP_08446441.1| DNA mismatch repair protein MutS [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683361|gb|EGJ56241.1| DNA mismatch repair protein MutS [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 859 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 296/891 (33%), Positives = 482/891 (54%), Gaps = 50/891 (5%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + TP+M+QY +IKS PD+L+ +R+GDFYE F +DA+ A+ L I LT R + Sbjct: 1 MAKETPLMKQYNQIKSKYPDALLLFRVGDFYETFGEDAVKAAHTLDIVLTNRNNGSERS- 59 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 + G P H+ N Y+ KL+K G+R+AIC+Q+E P + K +V+R V LVTPG Sbjct: 60 ELAGFPYHSINTYLPKLVKAGYRVAICDQLEDP-----KLVKGIVKRGVTELVTPGVALN 114 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 D +L ++N+L +V + IA++DISTG F ++ + + + P EI+ ++ Sbjct: 115 DDILQSKNNNFLASVWLGKQLCGIAFLDISTGEFLVAQGDKPYIDKLLQNFKPSEILIAK 174 Query: 202 KELSHAEYKSLFETLGN--VAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 ++ K+ E+ G + F + + ++ ++ FG E Sbjct: 175 QQ-----KKAFAESFGEDFHCFFLEDWVFKEDYARQALTKHFQTNSLKGFGVDELTEAIL 229 Query: 260 AAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS--LLK 316 A AI Y+ +TQ I +R + +++D NLE+ +GS QS L+ Sbjct: 230 TAGAILYYLSETQHHQLQHITTLQRIAEDAYVWLDRFTIRNLELY---AGSSAQSVTLID 286 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 ID +++ G R +A PL KI R + + + + + +N I++ + D+ R Sbjct: 287 VIDKTLSPMGSRTLKRWLALPLKKIEKIEQRHEVVAYLLDHTDTLNLIKENISRMGDIER 346 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 +S++ + P+++ + + I L++ E L +KL Q L + Sbjct: 347 LISKVATLKINPREVVQLCASLEHIAPIKQQCLQSG-KESLSLLGDKLHDC-QQLCTRIR 404 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 L+D+ P G + G A LDE R+L K + L L+ + T I +LKI N Sbjct: 405 QTLTDEAPVNIAKGNAIAAGFSAELDELRNLSHTGKSYLDDLLLRETQRTGIPSLKIDSN 464 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 N GY+IEV ++ + D ++ +QT+ N R+ T EL + E +I A Sbjct: 465 NVFGYYIEVRNTHKDKVPAD------WVRKQTLVNAERYITDELKEYEAKIVGAEERISQ 518 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E + L + I E + + +I +D A LA E +Y RP + S +K+ Sbjct: 519 LEQSLYAELISYISEYIAQVQTNANLIGQLDTLCGFATLALENHYNRPEMSESYVIDIKE 578 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP++EK L P+IAND L D+++ +L ++TGPNM GKS LRQ ALIV++ Sbjct: 579 GRHPVIEKQLP--VGTPYIANDVYL----DRDTQQLMMITGPNMSGKSAILRQTALIVLL 632 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+GS+VPA+ AHIGIVDK+F+RVG++DN++ G STFMVEM E A ILN +++S ++LD Sbjct: 633 AQIGSFVPATSAHIGIVDKIFTRVGASDNISVGESTFMVEMNEAALILNNLSDRSLILLD 692 Query: 737 EIGRGTATLDGLSIAWATIEYLHE-TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 EIGRGT+T DG+SIAWA EYLHE +R + L ATH+HEL ++++ +R N + V ++ Sbjct: 693 EIGRGTSTYDGISIAWAIAEYLHEHPSRAKTLFATHYHELNEMTEQFERIKNYNVTVKET 752 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN--------Q 847 + ++FL K+ G + HS+GI V K+AG+P V+ +A +L+ E++++ N Q Sbjct: 753 QDSVLFLRKLAAGGSAHSFGIHVAKMAGMPQYVVQKANKMLQKLEQMHNVNTTEAVKAAQ 812 Query: 848 KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 K+M+L + ++ + + + KND L L+++ ++P+ AL L +K Sbjct: 813 KEMQLSFFDM--SDPRLDELKNDLL------SLDINSLTPVEALMKLNEMK 855 >gi|304438411|ref|ZP_07398351.1| DNA mismatch repair protein MutS [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368494|gb|EFM22179.1| DNA mismatch repair protein MutS [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 860 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 299/889 (33%), Positives = 478/889 (53%), Gaps = 51/889 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 + ++ TPMM+QY+ K +P L+F+R+GDFYE+FFDDA +A++ LG+TLT R L K+ Sbjct: 2 DAQNVTPMMQQYLAAKEAHPGELLFFRLGDFYEMFFDDAKVAAKELGLTLTSRSGDLEKN 61 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 PMCGVP H A+ YI +L+ G ++AI EQI P K L R VV++VTPGT Sbjct: 62 -PMCGVPYHAADSYIARLVAKGFKVAIAEQIGDP------KAKGLTHREVVKVVTPGTAL 114 Query: 141 EDQLLSPTDSNYLMAVAR-IRTEWAIAWIDISTG--IFKISTSNH--DRLISDIMRIDPR 195 D+ L + Y++ + ++ +A DI+TG + + H +++ ++ R Sbjct: 115 SDEALRDASNIYIVLLHEPAPGQFVLAGADITTGEAFYAVYAGEHAAQQIMDELYRRMAA 174 Query: 196 EIIFSEK-ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 E++ +E L+ L L + AV+ + D ++ A ++ + Sbjct: 175 ELLLTEGFSLADEVRAFLAHRLPHCAVSVVSREADAALP----AQHFPAEEIPC----DA 226 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQS 313 + A AA ++Y+ +T M + I D T+ +D+ NLEI R+L G ++ + Sbjct: 227 GARAALAALLTYLHETVMADLSQINRLAFLDAAETMQLDTYTLRNLEITRSLRDGGKKNT 286 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D++ T G RL + PL +I+ RLD++ ++ L + ++ L + D Sbjct: 287 LFDVLDFTRTPMGTRLLKAWLEHPLLTPHRIDARLDAVAELVEKSTLRDALRDALHTVYD 346 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 R L+R++ +D+ +R + + + + L L A +++ +L Sbjct: 347 FERLLTRIETQTANARDLVALRISL-AALPAVRACLTAAASRLLVRAAGEIETF-DALRD 404 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L+ L D+ R+GG +R G DA LDE R SK ++ ++ + T IK LKI Sbjct: 405 ELTRALVDEPGLSVREGGMIRAGYDADLDELRRFSHDSKSLLQEMEERERTRTGIKTLKI 464 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GY+IEV S +D + + +I +QT++N RF T EL D E +I A Sbjct: 465 GYNKVFGYYIEVRHSG-----RD-QVPEGYIRKQTLANTERFITEELKDFEAKILGAEEK 518 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 +E F L + EQ + ++ IA +D+ +LA A Y RP + Sbjct: 519 ITALEYHLFTELRERVREQLVPIQGVARAIARVDVLQSLAAAAASYRYVRPTVGADGGIR 578 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 ++DGRHP+VE+ L++ F+ ND +LS + L+TGPNM GKST++RQ AL+ Sbjct: 579 IRDGRHPLVERILQRDV---FVPNDTELS----HGGTETMLITGPNMAGKSTYMRQVALL 631 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MAQ+GS+VPA A I VD++F+R+G++D+L SG+STFMVEM E A IL +AT S V Sbjct: 632 TLMAQVGSFVPARTAEIAPVDRIFTRIGASDDLVSGQSTFMVEMNEVAQILREATRDSLV 691 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ILDEIGRGT+T DG+SIA A +E++ + L ATH+HELT++ +R N + V Sbjct: 692 ILDEIGRGTSTFDGMSIARAVVEHIDGRIHAKTLFATHYHELTEMEN--ERIRNYCIAVR 749 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 + + ++FL +++ G AD SYGI V +LAGLP V RA +IL E + Sbjct: 750 EKGKNVVFLRRIVAGAADKSYGIHVARLAGLPQRVTERAEEILHALEAAAPQSA------ 803 Query: 854 YPEIQTKESKNNLSKNDKLF----VEKIKCLNLDEMSPLTALKTLYAVK 898 P+ +T K + + LF +++++ L++ M+PL AL TLY ++ Sbjct: 804 -PQ-ETSVQKTSDAGMVSLFAGGTLDELRALDVMTMTPLEALNTLYRLQ 850 >gi|328944747|gb|EGG38908.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK1087] Length = 849 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 282/820 (34%), Positives = 449/820 (54%), Gaps = 46/820 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYPDAFLLFRMGDFYELFYDDAVNAAQILEISLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI L++ G+++AI EQ+E P EAK +V+R VV+++TPGT+ + Sbjct: 67 VPYHSAQQYIDVLVESGYKVAIAEQMEDPKEAK-----GVVKREVVQVITPGTVVDS--- 118 Query: 146 SPTDS--NYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEK 202 S DS N+L+A+ + +A++D+ TG F++++ L+ +I + RE++ Sbjct: 119 SKPDSANNFLVALDYSDGLYGLAYMDLVTGEFQVTSLEDFSLVCGEIRNLKAREVVLG-- 176 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS-FSQVEKTAAA 261 +L E V Q N+ S ++ + D V G S +E+ AA Sbjct: 177 -------YALPEAEEQVLAGQMNLLL--SYVQTALDD------VQLLGEELSPMERQAAG 221 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 + Y+ +TQM + + +I+ L +D A +++L++ SG + SL +D Sbjct: 222 KLLEYVHRTQMRELSHLKKAQHYEIKDFLQMDYATKASLDLTENARSGKKHGSLYWLMDE 281 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGR+ I PL D +I+ R + + F+ + + + + LK D+ R SR Sbjct: 282 TKTAMGGRMLRSWIQRPLIDEARISQRQNVVEVFLDHFFERSDLTESLKGVYDIERLASR 341 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + G+ PKD+ + + + + L+ L +E L +P+ L +SS +S Sbjct: 342 VSFGKTNPKDLLQLAATL-GNVPQIKAILQGIGSPHLATLIEGLDPIPE-LAGLISSAIS 399 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D P +G +R G D +LD+ R + + IA L++K + I NLKI +N G Sbjct: 400 PDAPHIITEGNIIRTGFDETLDQYRLVLREGTGWIAELEVKERVNSGISNLKIDYNKKDG 459 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+ VT+S + + F + T+ N RF T EL +E + A + +E E Sbjct: 460 YYFHVTNSQLAHVPS------HFFRKATLKNSERFGTEELARIEGEMLEAREKSANLEYE 513 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F + + + + L +Q +A +D+ + A +A++Q+ RP ++ GRH Sbjct: 514 IFMRIRDEAGKYIQRLQALAQTLAAVDVLQSFAAVAEQQHLVRPSFTAERRLQIEKGRHA 573 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + QS +I N L + + L+TGPNM GKST++RQ A+IVIMAQMG Sbjct: 574 VVEKVMGAQS---YIPNSILLDQETN-----IQLITGPNMSGKSTYMRQLAIIVIMAQMG 625 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 SYVPA A + + D +F+R+G+AD+L SG+STFMVEM+E + QA+ +S ++ DE+GR Sbjct: 626 SYVPAQSASLPLFDAIFTRIGAADDLVSGQSTFMVEMMEANRAIRQASERSLILFDELGR 685 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A IE++H + L ATH+HELT L SL+ N + +++ + Sbjct: 686 GTATYDGMALAQAIIEHIHHYTGAKTLFATHYHELTALEDSLEHLENVHVATLENDGQVT 745 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 FLHK+ PG AD SYGI V K+AGLP ++ RA IL E Sbjct: 746 FLHKIEPGPADKSYGIHVAKIAGLPEKLLERADSILSHLE 785 >gi|325686753|gb|EGD28779.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK72] Length = 849 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 291/887 (32%), Positives = 476/887 (53%), Gaps = 61/887 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYPDAFLLFRMGDFYELFYDDAVNAAQILEISLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI L++ G+++AI EQ+E P EAK +V+R VV+++TPGT+ + Sbjct: 67 VPYHSAQQYIDVLVESGYKVAIAEQMEDPKEAK-----GVVKREVVQVITPGTVVDS--- 118 Query: 146 SPTDS--NYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEK 202 S DS N+L+A+ + +A++D+ TG F++++ L+ +I + RE++ Sbjct: 119 SKPDSANNFLVALDYSDGLYGLAYMDLVTGEFQVTSLEDFALVCGEIRNLKAREVVLG-- 176 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS-FSQVEKTAAA 261 +L E V Q N+ S ++ + D V G S +E+ AA Sbjct: 177 -------YALPEAEEQVLAGQMNLLL--SYVQTALDD------VQLLGEELSPMERQAAG 221 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 + Y+ +TQM + + +I+ L +D A +++L++ SG + SL +D Sbjct: 222 KLLEYVHRTQMRELSHLKKAQHYEIKDFLQMDYATKASLDLTENARSGKKHGSLYWLMDE 281 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGR+ I PL D +I+ R + + F+ + + + + LK D+ R SR Sbjct: 282 TKTAMGGRMLRSWIQRPLIDKARISQRQNVVEVFLNHFFERSDLTESLKGVYDIERLASR 341 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + G+ PKD+ + + + + L+ L +E L +P+ L +SS +S Sbjct: 342 VSFGKTNPKDLLQLAATL-GNVPQIKAILQGIGSPHLARLIEGLDPIPE-LAGLISSAIS 399 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D P +G +R G D +LD+ R + IA L++K + I NLKI +N G Sbjct: 400 PDAPHIITEGNIIRTGFDETLDQYRLVLRDGTGWIAELEVKERANSGISNLKIDYNKKDG 459 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+ VT+S + F + T+ N RF T EL +E + + + +E E Sbjct: 460 YYFHVTNSQLA------HVPSHFFRKATLKNSERFGTEELARIEGEMLESREKSANLEYE 513 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F + + + L +Q +A +D+ + A +A++ + RP+ ++ GRH Sbjct: 514 IFMRIREEAGKYIQRLQALAQTLAAVDVLQSFAAVAEQLHLVRPVFTAERCLQIEKGRHA 573 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + QS +I N L D + L+TGPNM GKST++RQ A+IVIMAQMG Sbjct: 574 VVEKVMGAQS---YIPNSILLDQETD-----IQLITGPNMSGKSTYMRQLAIIVIMAQMG 625 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 SYVPA A + + D +F+R+G+AD+L SG+STFMVEM+E + QA+ +S ++ DE+GR Sbjct: 626 SYVPAQSASLPLFDAIFTRIGAADDLVSGQSTFMVEMMEANRAIRQASERSLILFDELGR 685 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A IE++H + L ATH+HELT L +SL+ N + + + + Sbjct: 686 GTATYDGMALAQAIIEHIHHYTGAKTLFATHYHELTALEESLEHLENVHVATLEKDGQVT 745 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP-EIQT 859 FLHK+ PG AD SYGI V K+AGLP ++ RA +IL H +D L ++ Sbjct: 746 FLHKIEPGPADKSYGIHVAKIAGLPEKLLERADNILS------HLESQDTGLGSELPTES 799 Query: 860 KESKNNLSKNDKLFVE--------KIKCLNLDEMSPLTALKTLYAVK 898 ++ ++ +++ LF E +++ L++ M+PL + + +K Sbjct: 800 RQKRSQVAEQMSLFAEGTENPILTELRDLDIYNMTPLEVMAAVAELK 846 >gi|254525938|ref|ZP_05137990.1| DNA mismatch repair protein MutS [Prochlorococcus marinus str. MIT 9202] gi|221537362|gb|EEE39815.1| DNA mismatch repair protein MutS [Prochlorococcus marinus str. MIT 9202] Length = 913 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 306/860 (35%), Positives = 471/860 (54%), Gaps = 85/860 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TP+M+ Y+ +K N D L+ YR+GDF+E FF+DA+L S L ITLT + GK +GK IPM Sbjct: 86 TPVMKHYVTLKEENKDRLLLYRLGDFFECFFEDAVLISNLLEITLTSKDAGKEIGK-IPM 144 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSL-VRRNVVRLVTPGTLTED 142 GVP H Y LIK + + IC+Q+E K GN +RR + R++TPGT+ E+ Sbjct: 145 AGVPHHAMERYCADLIKKNYSVVICDQLE-----KSSGNYGTPIRRGITRIITPGTVIEE 199 Query: 143 QLLSPTDSNYLMAV------ARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPR 195 +L +N++ A+ + EW I+ D+STG + + ++ +L +I+++D Sbjct: 200 GMLIAKKNNWITAIYLSEENSDESYEWGISKADVSTGELITLQGNSLSKLFDEIIKLDSS 259 Query: 196 EIIFSE--------KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVD 247 EII +E S Y ET N + + N +I +Y+ I ++ Sbjct: 260 EIIVGSNAVRDLLIRENSQITYTVSQET--NFGINEANY---------QIKNYFQIANLE 308 Query: 248 TFGSFSQVEKTAAAAAI-SYIKKTQMVN-------KPTIGYPEREDIQSTLFIDSAARSN 299 G + T + + +Y++K N K ++ +P+ + + L ID + N Sbjct: 309 GIGLKNLNNATRSLGGLLNYLEKINPSNLDKDSSVKISLDFPQIQFGHNKLIIDYQTQKN 368 Query: 300 LEILRTLSGSREQ----SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFI 355 LEI T RE SLL +ID + T G R I SPL + +I R + I FI Sbjct: 369 LEIKNT---QRENNYVGSLLWSIDRTYTCMGARCLRRWIDSPLLNVNEIYKRQNIITNFI 425 Query: 356 QNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSG---INILNLFLKND 412 ++ L Q +L++ D+ R R G P+D+ I +G++ +I+ LF + D Sbjct: 426 ESKQLRIDTQNLLRAMGDLERLAGRACAGHASPRDLIAIAEGLKKLPRLKSIIELF-RYD 484 Query: 413 LPEELRGAVEKLKKLPQSL---EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRD 469 LP+ ++LK + + L +S L ++ P +GG + DG D LD R+L D Sbjct: 485 LPD----WTDQLKNIDEGLLELADIISFKLIENPPLSISEGGMIHDGVDNILDGLRNLMD 540 Query: 470 QSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTM 529 + +LK + +KI NLKI+ + N GY+I + S ++ + +I RQT+ Sbjct: 541 DYSEWLNKEELKEKKISKISNLKIQFHKNFGYYISINKSKVNL------APQHWIKRQTL 594 Query: 530 SNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDIS 589 +N R+ T E+ + EN+I + A E E F L N + E+++ + + ++ IA +D Sbjct: 595 TNEERYITSEIKNKENKIFQIKSRASSREYEIFCELRNIVAEKTKQIRSIAKSIASLDAL 654 Query: 590 IALAILAKEQNYCRPII--------DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDL 641 + L+I + E N+ +P + NST I GR+PIVE+ L + K FIAND Sbjct: 655 LGLSITSVENNFIKPSLIPINDSTTKNSTKIIA--GRNPIVEQLL---NDKQFIANDISF 709 Query: 642 SCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVG 701 + + KL +LTGPN GKS F+RQ LI I+AQ+GS+VPA+ A I I D++F+R+G Sbjct: 710 -----EENQKLIILTGPNASGKSCFIRQLGLIQILAQIGSFVPANNAEIKIADRIFTRIG 764 Query: 702 SADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHET 761 + D+ +SG+STFMVEM ETASILNQAT+ S V+LDEIGRGT+T DGLSIAW+ EYL + Sbjct: 765 AVDDQSSGQSTFMVEMSETASILNQATSSSLVLLDEIGRGTSTFDGLSIAWSVSEYLAKI 824 Query: 762 NRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKL 821 +C + ATH+HEL L S K N + V +N+ +IF H+++ G ++ SYGI+ KL Sbjct: 825 IQCNTIFATHYHELNYLKNSNKNIQNFQVLVEQNNDQLIFSHRIVKGGSNKSYGIEAAKL 884 Query: 822 AGLPNTVISRAYDILKTFEK 841 AG+P VI +A +L + E+ Sbjct: 885 AGVPKEVIEKAKSVLNSLEE 904 >gi|254497513|ref|ZP_05110305.1| DNA mismatch repair protein [Legionella drancourtii LLAP12] gi|254353230|gb|EET11973.1| DNA mismatch repair protein [Legionella drancourtii LLAP12] Length = 818 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 285/857 (33%), Positives = 458/857 (53%), Gaps = 51/857 (5%) Query: 48 MGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAI 107 MGDFYELFFDDA A+ L +TLT RG+ K IPM GVP H +Y+ +L+K G +AI Sbjct: 1 MGDFYELFFDDAKRAAHLLNLTLTHRGQSADKPIPMAGVPYHAVENYLARLLKKGESVAI 60 Query: 108 CEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAW 167 CEQI P +K V R V R++TPGT+T++ LL N L+A+ + R + +AW Sbjct: 61 CEQIGDP-----ATSKGPVERQVTRIITPGTVTDEALLDAKKDNLLLALHQQRQKIGLAW 115 Query: 168 IDISTGIFKI-STSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAV-AQPN 225 D+S+G F + + L +++ R+ P E++ E L E N V +P Sbjct: 116 GDLSSGRFHLLELAETSELSAELTRLQPAELLLQEA-------SPLEEYCLNFPVKVRPG 168 Query: 226 VFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAAAAAISYIKKTQMVNKPTIGYPERE 284 F+ ++ R+ + + ++ + FG AA A +SY++ TQ P + E Sbjct: 169 WEFNFDSAKKRLCEQFTVSNLAAFGEQDYPTALIAAGALLSYLQTTQKQALPHLNALTLE 228 Query: 285 DIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKI 344 + L +D++ + +LE+ + G E SLL +D + G RL + PL + I Sbjct: 229 NSHDYLQLDASTQKHLELFENVQGGHENSLLSVLDKTACTMGSRLLKRWLGRPLKQQSLI 288 Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 R +I I I ++L+ DV R +SR+ + P+D+ + + I Sbjct: 289 QARQQAIAEIIGLQCEAT-IHQLLRQICDVERIVSRIALKSARPRDLLALGTTLTVLPEI 347 Query: 405 LNLFLKNDLPE--ELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLD 462 +N P EL+ + L +L++ L++ + ++ P RDGG + G D LD Sbjct: 348 HAALAQNKCPLALELKAHTQPLP----TLQQLLAAAIIENPPVLIRDGGVIAPGFDEELD 403 Query: 463 ETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDR 522 E R L ++ + L+ + T + +LK NN GY+IE++ + + ++ Sbjct: 404 ELRMLSTRANETLDKLEQDERQRTGLSSLKFGFNNVQGYYIELSKAQSE------KAPTH 457 Query: 523 FIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQV 582 + +QT+ N+ R+ T EL E ++ +A AL E ++ L I + L ++ Sbjct: 458 YHRKQTLKNVERYITPELKVFEEKVLSAQVKALAREKWLYDNLLEEIQQSIAELTQLARA 517 Query: 583 IAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLS 642 +A +D+ + LA A+ N+C P + + ++ GRHP++E L++Q FIAND L Sbjct: 518 LAQLDVVVTLAERAQSLNWCCPSLVPESQISIQAGRHPVIENLLQEQ----FIANDLQL- 572 Query: 643 CPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGS 702 + + L+TGPNMGGKST++RQ ALIV++A +GS+VPA +G +D++F+R+G+ Sbjct: 573 ----QPEQNILLITGPNMGGKSTYMRQTALIVLLAHIGSFVPAQAVTLGPIDRIFTRIGA 628 Query: 703 ADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETN 762 +D+LASGRSTFMVEM ETA IL QAT +S V++DEIGRGT+T DG+++A+A+ YL T Sbjct: 629 SDDLASGRSTFMVEMTETAQILRQATQESLVLIDEIGRGTSTYDGMALAYASCAYLATTI 688 Query: 763 RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLA 822 + L +TH+ ELT+LS+ N LQ S IIFL++V PG A+ SYG++V +LA Sbjct: 689 KAYTLFSTHYFELTNLSQQWPCIRNVHLQASLETGRIIFLYRVEPGYANRSYGLEVAELA 748 Query: 823 GLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNL 882 G+P V+ A LK H Q D P +++ + + ++ ++ Sbjct: 749 GIPADVLQIARSHLK-------HMQTDAPAAEPFQAVIQARPQV-------LRELAKIDP 794 Query: 883 DEMSPLTALKTLYAVKA 899 D+++ AL +Y +KA Sbjct: 795 DQLTAREALDLIYRLKA 811 >gi|291166608|gb|EFE28654.1| DNA mismatch repair protein MutS [Filifactor alocis ATCC 35896] Length = 870 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 292/888 (32%), Positives = 492/888 (55%), Gaps = 42/888 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY IK +PD+++F+R+GDFYE+FF+DA AS+ L I LT R L + PMCG Sbjct: 5 TPMMEQYFLIKEQHPDAILFFRLGDFYEMFFEDAKEASKILEIALTGRSCGLEEKAPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H+ + YIQKLI+ G ++AICEQ+E P E K LV+R V +++TPGT ++ ++ Sbjct: 65 IPFHSCDSYIQKLIQAGKKVAICEQMEDPKETK-----GLVKREVTKIITPGTFIDESVI 119 Query: 146 SPTDSNYLMAV--ARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 +NY+++V + E+A+A++D+STG +S ++ +I P E+I + Sbjct: 120 QSFRNNYILSVYLSNDHKEFALAYVDVSTGDLNVSKVSYFDFADIFYKISPSELIGNSVF 179 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHS--ISESRIADYYNITTVDTFGSFSQVE---KT 258 ++ K + V +V + S IS+ ++++ + T Q + Sbjct: 180 INFLNGKEKLARQIRLFVQNHHVCVNASELISKEVEIEFFSEEYLRTQHLLEQQNTDVRL 239 Query: 259 AAAAAISYIKKTQMV---NKPTIGYPEREDIQSTLFIDSAARSNLEILRT-LSGSREQSL 314 + +SYI+ TQ N +I + ++ L +D ++ SNLE++ + L +++ SL Sbjct: 240 SIRILLSYIQYTQKTVANNLNSIHWIYQD---KYLHLDYSSISNLELMESFLQKNKKYSL 296 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 +D + T G R+ + I PL D +I RLD + I + L +++ L S D+ Sbjct: 297 FGVLDKTKTSMGARMLRKWIEHPLRDKKEIEQRLDIVEECISDYSLREDLREYLDSVYDM 356 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEE--LRGAVEKLKKLPQSLE 432 R +++ +D+ +++ + ++ NL K +L ++ L E++ L + + Sbjct: 357 ERICAKISYDTVTVRDLLNLKESL---YDLPNLREKIELSDKKLLIQIFEQMDTL-EDIY 412 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 L +SD +DG +R+G LDE RS+ + I++ ++L+ T K LK Sbjct: 413 HLLDDSISDRPIGTIKDGEVIREGYSKELDEMRSIEKNAASILSQMELQERASTGFKTLK 472 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 I +N GY+IE+T ++ K E + ++ +QT++N R+ EL +LE +I + Sbjct: 473 IGYNKVFGYYIEITHAAL----KSGELPESYVRKQTLANCERYINQELKELEIKILTSRQ 528 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 AL ++ E + + + + + I +D ++LA + + +Y +P I+ Sbjct: 529 RALDLQNELYAEVKTQVKHAVFRIQTTADKIGSLDALLSLAETSYQNDYVKPSINKEKRL 588 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 + DGRHP+VE+ +++Q F+ ND +L DKN ++TGPNMGGKST++RQ AL Sbjct: 589 EIADGRHPVVERLVEEQ---IFVPNDTNL--LKDKN---FMIITGPNMGGKSTYMRQVAL 640 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 I IMA +G Y+PA I ++D +++RVG+AD+L+ G+STFMVEM E + IL AT S Sbjct: 641 ICIMAHIGCYIPAKSGDIPLLDAIYTRVGAADDLSQGQSTFMVEMNEVSHILEHATEHSL 700 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 VILDE+GRGT+T DG+SIAWA + ++ +C L +TH+HE+TD+++ N + V Sbjct: 701 VILDEVGRGTSTYDGMSIAWAIVAFICRKIQCMTLFSTHYHEITDIAERFDNVVNYCVAV 760 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 + E ++FL K++ G AD SYGI V KLA LP V+S A L +L Q+ R Sbjct: 761 EEKKEEVLFLRKLVQGKADKSYGIHVAKLAHLPKEVLSLAEHKLN---QLQSQKQEWSRE 817 Query: 853 YYPEIQTKESKNNLSKN--DKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ +ESK + KN + + +++ +N D ++PL AL ++ +K Sbjct: 818 IGEDVFVEESKESDIKNLKHREIINELEGINTDTLTPLEALLVIHKIK 865 >gi|78780122|ref|YP_398234.1| DNA mismatch repair protein [Prochlorococcus marinus str. MIT 9312] gi|123553657|sp|Q317Z7|MUTS_PROM9 RecName: Full=DNA mismatch repair protein mutS gi|78713621|gb|ABB50798.1| DNA mismatch repair protein MutS [Prochlorococcus marinus str. MIT 9312] Length = 913 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 307/858 (35%), Positives = 469/858 (54%), Gaps = 85/858 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TP+M+ Y+ +K N D L+ YR+GDF+E FF+DA+L S L ITLT + GK +GK IPM Sbjct: 86 TPVMKHYVTLKEENKDRLLLYRLGDFFECFFEDAVLISNLLEITLTSKDAGKEIGK-IPM 144 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSL-VRRNVVRLVTPGTLTED 142 GVP H Y LIK + + IC+Q+E K GN ++R + R++TPGT+ E+ Sbjct: 145 AGVPYHAMERYCADLIKKNYSVVICDQLE-----KSSGNYGTPIKRGITRIITPGTVIEE 199 Query: 143 QLLSPTDSNYLMAV------ARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPR 195 +L +N++ A+ + EW I+ D+STG + + + +L +I+++D Sbjct: 200 GMLIAKKNNWITAIYLSEENSNESYEWGISKADVSTGELITMEGQSLSKLFDEIIKLDSS 259 Query: 196 EIIFSEKEL--------SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVD 247 EII E+ S Y ET N + + N I Y+ I +++ Sbjct: 260 EIIIGSNEVRNLLMNGNSQISYTVSQET--NFGINEANYL---------IKKYFQIVSLE 308 Query: 248 TFGSFSQVEKTAAAAAI-SYIKKTQMVN-------KPTIGYPEREDIQSTLFIDSAARSN 299 G + T + + +Y+KK +N K ++ +P+ + + L ID + N Sbjct: 309 GIGLKNLNNATRSLGGLLNYLKKINPLNLDKDSSVKISLDFPQIQFCHNKLIIDYQTQKN 368 Query: 300 LEILRTLSGSREQ----SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFI 355 LEI T RE SLL +ID + T G R I SPL + +I R + I+ FI Sbjct: 369 LEIKNT---QRENNYVGSLLWSIDRTYTCMGARCLRRWIDSPLLNVNEIYKRQNIISNFI 425 Query: 356 QNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSG---INILNLFLKND 412 ++ + Q +L++ D+ R R G P+D+ I +G++ +I+ LF K D Sbjct: 426 ESKQVRMDTQNLLRAMGDLERLAGRACAGHASPRDLIAIAEGLKKLPRIKSIIELF-KYD 484 Query: 413 LPE---ELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRD 469 LP+ +L+ E+L +L T+S L + P +GG + DG D LD R+L D Sbjct: 485 LPDWTDQLKNIDEELLELAD----TISFQLIEHPPLNISEGGMIHDGVDNILDGLRNLMD 540 Query: 470 QSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTM 529 + +LK + +KI NLKI+ + N GY+I + S ++ + +I RQT+ Sbjct: 541 DYSEWLNQEELKERKISKISNLKIQFHKNFGYYISINKSKVNL------APQHWIKRQTL 594 Query: 530 SNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDIS 589 +N R+ T ++ + EN+I + A E E F L + E+++ + + ++ IA +D Sbjct: 595 TNEERYITTDIKNKENKIFQIKSRASSREYEIFCELRKMVAEKTKQIRSIAKSIASLDAL 654 Query: 590 IALAILAKEQNYCRPII--------DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDL 641 + L+I + E N+ +P + NST I GR+PIVE+ L + K F AND Sbjct: 655 LGLSITSVENNFIKPALIPINDSQKKNSTKIIA--GRNPIVEQLL---NDKKFTANDI-- 707 Query: 642 SCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVG 701 C +D + KL +LTGPN GKS F+RQ LI I+AQ+GS++PA+ A I I D++F+R+G Sbjct: 708 -CFDD--NQKLIILTGPNASGKSCFIRQIGLIQILAQIGSFIPANKAEIKIADRIFTRIG 764 Query: 702 SADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHET 761 + D+ +SG+STFMVEM ETASILNQAT+ S V+LDEIGRGT+T DGLSIAW+ EYL + Sbjct: 765 AVDDQSSGQSTFMVEMSETASILNQATSSSLVLLDEIGRGTSTFDGLSIAWSVSEYLAKK 824 Query: 762 NRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKL 821 +C + ATH+HEL L S K N + V +N+ IIF HK+ G ++ SYGI+ KL Sbjct: 825 IKCNTIFATHYHELNYLKNSNKNIENFQVLVEQNNDQIIFSHKIKKGGSNKSYGIEAAKL 884 Query: 822 AGLPNTVISRAYDILKTF 839 AG+P VI +A +L + Sbjct: 885 AGVPREVIEKAKLVLNSL 902 >gi|260060605|ref|YP_003193685.1| DNA mismatch repair protein MutS [Robiginitalea biformata HTCC2501] gi|88784735|gb|EAR15904.1| DNA mismatch repair protein [Robiginitalea biformata HTCC2501] Length = 871 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 289/892 (32%), Positives = 477/892 (53%), Gaps = 53/892 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TP+M+QY IK PD+L+ +R+GDFYE F DA A+ L I LT+R G Sbjct: 6 KKETPLMQQYNGIKKRYPDALLLFRVGDFYETFGADAERAAEILDIVLTQRNNG-GDQTA 64 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 + G P H N Y+ KL+K G R+AIC+Q+E P + K++V+R V LVTPG D Sbjct: 65 LAGFPHHALNTYLPKLVKAGQRVAICDQLEDP-----KQTKTIVKRGVTELVTPGVALGD 119 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK 202 +L +N+L AV + I+++D+STG F +S N + + P+EI+ S+ Sbjct: 120 DMLQAKSNNFLAAVHFGKLRMGISFLDVSTGEFFVSEGNRETTDKWLQNFSPKEILVSKN 179 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 + +++ F T + + VF + E+ + ++ +++ FG +Q + AA Sbjct: 180 HRT--DFREQFGTAYHTFNLEDWVFQEDYARET-LTGHFKTSSLKGFGIDAQPDGIVAAG 236 Query: 263 AI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 A+ Y+ +T+ IG R + +++D NLE+ RT SLL +D++ Sbjct: 237 AVLHYLGETRHRQLGHIGGVRRLASEDYVWMDRFTMQNLELFRTRDPG-GVSLLDVVDHT 295 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 + GGRL + +A PL D I R + +P + P+++ L+ D+ R +++ Sbjct: 296 RSPMGGRLLRQWLALPLKDLEAIRKRHRIVAHLNSHPEELGPMREQLRQMGDLERLIAKA 355 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKTLSSML 439 G+ P++ +++ +++ I + P +L G+++ Q+L + + ++L Sbjct: 356 AAGKITPRETVHLKNALQAVIPVKQRAAAAAEPALRDLAGSLDDC----QALRERIGAVL 411 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 ++ P G + G LDE R+L K + + + E T I +LKI NN Sbjct: 412 LEEAPAIIGKGRTVAPGFSEELDELRNLAGSGKDYLEQMLKREQERTGITSLKIASNNVF 471 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IEV ++ + + +I +QT+ + R+ T EL + E +I A L +E Sbjct: 472 GYYIEVRNTHKDKVPPE------WIRKQTLVSAERYITEELKEYEAKILGAEERILDLEQ 525 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 + F L + E + ++ +A +D A LA + Y P + ++T+ + GRH Sbjct: 526 QLFAQLVVWMQEYIAPVQENARTLARLDCLCGFANLAGQHGYVCPEMTDATDLRITQGRH 585 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P++E+ L S ++ ND L D+ ++ ++TGPNM GKS LRQ ALIV++AQ+ Sbjct: 586 PVIERQLPPGES--YVPNDLHL----DREQQQILMITGPNMSGKSAILRQTALIVLLAQI 639 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPA A +G+ DK+F+RVG++DN++ G STFMVEM E ASILN + +S ++LDEIG Sbjct: 640 GSFVPAEAARLGVTDKIFTRVGASDNISLGESTFMVEMNEAASILNNLSERSLILLDEIG 699 Query: 740 RGTATLDGLSIAWATIEYLHE-TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 RGT+T DG+SIAWA EYLH+ R + L ATH+HEL +++ S R N + V + + Sbjct: 700 RGTSTYDGISIAWAIAEYLHQHPARAKTLFATHYHELNEMAGSFARIKNYNVSVKELRDK 759 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY---------HHNQKD 849 ++FL K+ PG + HS+GI V ++AG+P V+ +A IL EK + H ++D Sbjct: 760 VLFLRKLEPGGSHHSFGIHVARMAGMPGEVVRKAQKILVQLEKSHAGEELTDGLHAVKED 819 Query: 850 MRLYYPEIQTKESKNNLSKNDKLF---VEKIKCLNLDEMSPLTALKTLYAVK 898 M+L + + +D L E+I L++D ++P+ AL L +K Sbjct: 820 MQLSF-----------FNLDDPLLEQIREEILDLDIDTLTPVEALMKLNEIK 860 >gi|325474683|gb|EGC77869.1| DNA mismatch repair protein mutS [Treponema denticola F0402] Length = 894 Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust. Identities = 295/851 (34%), Positives = 457/851 (53%), Gaps = 74/851 (8%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TPMMRQY+ IK+ D ++F+R+GDFYE+FFD+A+ SR L +TLTKR D+P Sbjct: 3 KPQTPMMRQYLSIKAKYKDEILFFRLGDFYEMFFDEAVEVSRILNLTLTKR-----NDVP 57 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCG+P H A YI +L++ G +IAICEQ+ P+ L R VV ++TPGT+ ED Sbjct: 58 MCGIPYHAAKIYIARLLRAGKKIAICEQVTEPVAG------GLTERKVVEVITPGTVAED 111 Query: 143 QLLSPTDSNYLMAV--ARIRTEW--------AIAWIDISTGIFKIS----TSNHDRLISD 188 L +NYL AV + +TE +A+ID++TG F + T ++ + + Sbjct: 112 DFLEQGSNNYLAAVYCSNKKTEGNSGFDYYAGLAYIDVTTGNFFATSFPKTDFKEQFLKE 171 Query: 189 IMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSI----SESRIADYYNIT 244 I RI+P+EI+ + E+ +L + L N + D S +E R+ + Sbjct: 172 IGRINPKEILIQQS--IQNEFPALKQILSEFPSMMQNFYPDWSFNPDQAEKRLCSTFGTE 229 Query: 245 TVDTF------------GSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFI 292 + F G Q + + IS+I ++ Y E + + + Sbjct: 230 NLKGFLLNTDSPEVPPAGLLLQYLEEISGRDISHISGIKI-------YAESDFVS----L 278 Query: 293 DSAARSNLEILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSI 351 D + R NLE+L L S SL ++++Y+ T G RL RI+ PL +I+ RLD + Sbjct: 279 DDSTRKNLELLTNLRDNSPSYSLFESVNYTKTAMGTRLLRRRISYPLRSKNEIDKRLDKV 338 Query: 352 NFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN 411 N ++ I++ L S D+ R R+ + + KD+ ++ + S I + +L + Sbjct: 339 NSLFKDGKASAIIRETLSSILDIERLSGRIAMQKTHGKDLLALKQSLNSVIRMGSLIEEK 398 Query: 412 DLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQS 471 L ++ KKL + L + + DD DG ++ G +D +++++ + Sbjct: 399 KL--NFLQLNDEEKKLLTEIRDLLENSIDDDCTIALNDGKLIKKGFSKKVDTIKNIKENA 456 Query: 472 KRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSN 531 I+ ++T I NLKIK+N +GYF+EV+ + S + D FI ++++SN Sbjct: 457 HEILEKYLDDERKKTGINNLKIKYNRMMGYFLEVSLGNISAVP------DYFIRQRSLSN 510 Query: 532 LTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIA 591 RFTT L +E+ I N+ + E E F+ + I L ++ +A +D++ + Sbjct: 511 ADRFTTESLKQIEDNINNSEERLIEAEKEVFDEVCTEIGSHHCFLQKLAEEVAELDVNQS 570 Query: 592 LAILAKEQNYCRPIIDNSTNFI-VKDGRHPIVEKTLKQQSSKPFIANDCDL-----SCPN 645 A A + RP + + + + GRHP+VE L+ + F+ N +L + P Sbjct: 571 FAQAAVLHAWTRPELCGDSGILNIIGGRHPVVENHLR---AGDFVPNSIELLSGENTNPE 627 Query: 646 DKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADN 705 D+ ++TGPNM GKSTFLRQ ALI ++AQ+GS+VPA A + VDK+F RVG+ DN Sbjct: 628 DETIPSFAVITGPNMAGKSTFLRQTALICLLAQIGSFVPAEKAVLSPVDKIFCRVGATDN 687 Query: 706 LASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCR 765 LA G STF+VEMIETA ILN AT S VI+DE+GRGT+ DGL+IA A E+L T + + Sbjct: 688 LARGESTFLVEMIETAYILNSATRNSLVIMDEVGRGTSMEDGLAIAQAVSEHLLNTIKAK 747 Query: 766 GLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLP 825 L ATH+HELT L ++ N L V ++ I+FL KV+PG A +SYGI V LAG+P Sbjct: 748 TLFATHYHELTRLEH--EKIINLKLDVLEAEGKIVFLKKVVPGAAGNSYGIHVAGLAGIP 805 Query: 826 NTVISRAYDIL 836 +V++RA ++L Sbjct: 806 QSVLTRAENLL 816 >gi|325695321|gb|EGD37221.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK150] Length = 849 Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust. Identities = 283/820 (34%), Positives = 445/820 (54%), Gaps = 46/820 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYPDAFLLFRMGDFYELFYDDAVNAAQILEISLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI L++ G+++AI EQ+E P EAK +V+R VV+++TPGT+ + Sbjct: 67 VPYHSAQQYIDVLVESGYKVAIAEQMEDPKEAK-----GVVKREVVQVITPGTVVDS--- 118 Query: 146 SPTDS--NYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEK 202 S DS N+L+A+ + +A++D+ TG F++++ L+ +I + RE++ Sbjct: 119 SKPDSANNFLVALDYSEGLYGLAYMDLVTGEFQVTSLEDFALVCGEIRNLKAREVVLG-- 176 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS-FSQVEKTAAA 261 +L E V Q N+ S ++ + D V G S +E+ AA Sbjct: 177 -------YALPEAEEQVLAGQMNLLL--SYVQTALDD------VQLLGEELSPMERQAAG 221 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 + Y+ +TQM + + +I+ L +D A +++L++ SG + SL +D Sbjct: 222 KLLEYVHRTQMRELSHLKKAQHYEIKDFLQMDYATKASLDLTENARSGKKHGSLYWLMDE 281 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGR+ I PL D +I R + + F+ + + + + LK D+ R SR Sbjct: 282 TKTAMGGRMLRSWIQRPLIDEARIIQRQNVVEVFLDHFFERSDLTESLKGVYDIERLASR 341 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + G+ PKD+ + + + + L+ L +E L +P+ L +SS +S Sbjct: 342 VSFGKTNPKDLLQLAATL-GNVPQIKAILQGIGSPHLARLIEGLDPIPE-LAGLISSAIS 399 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D P +G +R G D +LD+ R + + IA L++K + I NLKI +N G Sbjct: 400 PDAPHIITEGNIIRTGFDETLDQYRLVLREGTGWIAELEVKERANSGISNLKIDYNKKDG 459 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+ VT+S + F + T+ N RF T EL +E + A + +E E Sbjct: 460 YYFHVTNSQLA------HVPSHFFRKATLKNSERFGTEELARIEGEMLEAREKSANLEYE 513 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F + + + L +Q +A +D+ + A +A++ + RP+ ++ GRH Sbjct: 514 IFMRIREEAGKYIQRLQALAQTLATVDVLQSFAAVAEQLHLVRPVFTAERCLQIEKGRHA 573 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + QS +I N L D + L+TGPNM GKST++RQ A+IVIMAQMG Sbjct: 574 VVEKVMGAQS---YIPNSILLDQETD-----IQLITGPNMSGKSTYMRQLAIIVIMAQMG 625 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 SYVPA A + I D +F+R+G+AD+L SG+STFMVEM+E + QA+ +S ++ DE+GR Sbjct: 626 SYVPAQSASLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANRAIRQASERSLILFDELGR 685 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A IE++H + L ATH+HELT L SL+ N + + + + Sbjct: 686 GTATYDGMALAQAIIEHIHHYTGAKTLFATHYHELTALENSLEHLENVHVATLEKDGQVT 745 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 FLHK+ PG AD SYGI V K+AGLP ++ RA IL E Sbjct: 746 FLHKIEPGPADKSYGIHVAKIAGLPEKLLERADSILSHLE 785 >gi|315640095|ref|ZP_07895218.1| DNA mismatch repair protein HexA [Enterococcus italicus DSM 15952] gi|315484142|gb|EFU74615.1| DNA mismatch repair protein HexA [Enterococcus italicus DSM 15952] Length = 846 Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust. Identities = 288/878 (32%), Positives = 474/878 (53%), Gaps = 46/878 (5%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 TPMM QY IK D+ +FYR+GDFYELF+DDA A++ L +TLT R K+ IPMC Sbjct: 7 QTPMMEQYFSIKKDYQDAFLFYRLGDFYELFYDDAEKAAQILELTLTSRNKNADDPIPMC 66 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H A YI LI+ G+++AICEQ+E P + K +V+R V++L+TPGT+ + + Sbjct: 67 GVPYHAAAGYIDTLIEKGYKVAICEQVEDP-----KTTKGMVKREVIQLITPGTVMDGKG 121 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 L ++NYL AV + ++ IA+ D+STG K + S+ D + +++ ++ +E+I ++ Sbjct: 122 LHSKENNYLTAVIKDGDDYGIAYADLSTGEMKATVVSDEDIVFNELATLETKELIVAQP- 180 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 L K + + LG V Q +E ++ + T + K A Sbjct: 181 LPDNLTKRIEQRLGAVMSVQA--------TEQQVGGLADAIT-------EPLAKQAVELL 225 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 +Y+++TQM + + L +D ++ NLE+ + + +G ++ +LL +D + Sbjct: 226 HAYLQRTQMRQLGHLQPAQFYQTDHYLKMDYYSKYNLELTQAIRTGKKQGTLLWLLDETK 285 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G RL + I PL I R + + +Q+ LK D+ R R+ Sbjct: 286 TAMGARLLKQWIDHPLIQQAAIERRQLQVASLLHAFFERVDLQESLKGVYDLERLAGRIA 345 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 G +D+ ++ ++ I + + EE + +L L + + + +++D Sbjct: 346 FGNVNGRDLLQLKHSLQQVPQIQAIIAGINY-EEWTALLTELTPL-EDVVALIDEAIAED 403 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P +G ++ G D+ LD+ R K+ +A L+ K +ET IKNLK+ +N GY+ Sbjct: 404 APLQITEGNVIKVGYDSQLDQYREAMRNGKQWLAELEAKERQETGIKNLKVGYNRVFGYY 463 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IE+ S A+++ +L +R+ +QT++N RF T EL LE I A + +E F Sbjct: 464 IEI--SKANIV--NLTQPERYDRKQTLANAERFITPELKKLEALILEAEERSTELEYRLF 519 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 + + + L ++ I+ +D+ + A +++ Y +P ++ + GRHP+V Sbjct: 520 IEVREQVKQAITRLQALAKAISTVDVLQSFATISERYQYVKPNMNQQQKLAIVQGRHPVV 579 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 EK L QQ +IAND + D+ + L L+TGPNM GKST++RQ AL VI+AQ+G + Sbjct: 580 EKVLGQQE---YIANDIVM----DQETFIL-LITGPNMSGKSTYMRQLALTVILAQIGCF 631 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA A + I D++F+R+G++D+L +G+STFMVEM+E L AT S ++ DE+GRGT Sbjct: 632 VPAESAELPIFDQIFTRIGASDDLIAGQSTFMVEMMEANQALQHATVNSLILFDELGRGT 691 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFL 802 AT DG+++A A IEY+H R + L +TH+HELT L + L N + + ++FL Sbjct: 692 ATYDGMALAQAIIEYIHRDIRAKTLFSTHYHELTVLDQELAHLRNQHVGAVEKEGEVVFL 751 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKES 862 HK++ G AD SYGI V KLAGLP +++RA IL + E +Q + + + + E Sbjct: 752 HKMMTGPADKSYGIHVAKLAGLPKELLTRASVILHSLE-----SQAQSPMAHID-EPVEQ 805 Query: 863 KNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAW 900 + + E++ LNL +M+P ++ + V W Sbjct: 806 LSLFQSQQQFVCEEVTQLNLSQMTP---IEVMLKVAEW 840 >gi|219682335|ref|YP_002468719.1| DNA mismatch repair protein [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|254766619|sp|B8D7V9|MUTS_BUCAT RecName: Full=DNA mismatch repair protein mutS gi|219622068|gb|ACL30224.1| DNA mismatch repair protein [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] Length = 802 Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust. Identities = 284/829 (34%), Positives = 478/829 (57%), Gaps = 54/829 (6%) Query: 17 DLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKH 76 +++ ++ + TPM++QY+ +KS PD L+FY+MGDFYELF++DA S L ITLTK+G Sbjct: 5 NIKNSMNNHTPMIKQYLSLKSQYPDMLLFYQMGDFYELFYEDAERISELLKITLTKKGYS 64 Query: 77 LGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTP 136 K IPM GVP H + +Y+ KL+K+G IAIC+Q + + KK+ L+ R VVR++TP Sbjct: 65 NHKIIPMAGVPCHKSEYYLSKLVKLGESIAICDQ-QKETDCKKK----LISRKVVRIITP 119 Query: 137 GTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST--SNHDRLISDIMRIDP 194 GT+T++ LL + N++ A+ + ++ + +D+S G F +S S+ D L+S+I R +P Sbjct: 120 GTVTDEVLLEENEDNFIAAIWKENNQFGYSVLDLSLGFFGVSKIFSSCD-LLSEIERTNP 178 Query: 195 REIIFSEKELSHAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFS 253 +EI++ E + +F + + ++ FD S + +N ++D FG Sbjct: 179 KEILYPEN------FSDVFLIESRKCIRKRSLLEFDLETSYKLLNLQFNTCSLDGFG--- 229 Query: 254 QVEKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG 308 +EK AA + Y+K M P I + ++ ++F++ + R +LEI + +SG Sbjct: 230 -IEKNNFVIRAAGCLLQYVKSMNMTVLPNIRQLKYNYMEDSIFMNFSTRKSLEITQNISG 288 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTR---LDSINFFIQNPILINPIQ 365 ++ +L ++ ++T G R+ + SPL + + R ++++ FF + +Q Sbjct: 289 EKKNTLSAILNKTVTSMGSRMLNRWLNSPLKNFKIVRNRHESVEALQFFYKE------LQ 342 Query: 366 KILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG--IRSGINILNLFLKNDLPEELRGAVEK 423 IL+ D+ R SRL + P D +R I ++++ +K+ +++R ++ Sbjct: 343 FILRQVNDLERIYSRLALRTASPHDFVRMRSTLEILPNLHLILKKIKSKHIKKIRLSIGY 402 Query: 424 LKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 +++ L+K +S S + RDGG + + + LDE RS++ SK I + + K Sbjct: 403 FEEVLCLLKKAISLKPSKCI----RDGGVIAELYNIELDELRSIKINSKEYIKNFEQKEK 458 Query: 484 EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDL 543 ++ I++ KIK N +GY+I+++ ++ K ++ QT+ N R++ L + Sbjct: 459 KKLMIESFKIKFNKIIGYYIQISKRHTHLIPK------YYVIIQTLKNTERYSVPLLKEY 512 Query: 544 ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCR 603 E ++ N+ +LL+E + + + N I E L N++ ++ +D+ + L+ A NY R Sbjct: 513 EEKVLNSEMRSLLLEKKLYAEIFNIIEPFLEKLQNSALALSELDVLVNLSERAISLNYTR 572 Query: 604 PIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 PI+ + + RHP+VE LK PFI N LS + ++ ++TGPNMGGK Sbjct: 573 PIMSEKYGISLLESRHPVVECFLKT----PFIKNSVFLS-----RTQRMIIITGPNMGGK 623 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 ST++RQ ALIVIMA +GS+VPA YA IG +DK+F+R+GSAD+L++G STFM+EM+E ++I Sbjct: 624 STYMRQIALIVIMAGIGSFVPARYALIGSIDKIFTRIGSADDLSNGYSTFMMEMMEISNI 683 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLK 783 L+ AT+ S V++DE+GRGT+T +GLS+AW+ YL N+ LL+THF ELT L + K Sbjct: 684 LHNATSNSLVLIDELGRGTSTNEGLSLAWSCSRYLININKSMTLLSTHFVELTKLEEKEK 743 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 N S+ I FL+K+ GI+ SYGI V L+GLP++V+ A Sbjct: 744 FVKNFHFSAIKSDLHIAFLYKIKNGISKKSYGISVASLSGLPDSVLEDA 792 >gi|157414251|ref|YP_001485117.1| DNA mismatch repair protein MutS [Prochlorococcus marinus str. MIT 9215] gi|157388826|gb|ABV51531.1| putative DNA mismatch repair protein [Prochlorococcus marinus str. MIT 9215] Length = 913 Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust. Identities = 306/860 (35%), Positives = 467/860 (54%), Gaps = 85/860 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TP+M+ Y+ +K N D L+ YR+GDF+E FF+DA+L S L ITLT + GK +GK IPM Sbjct: 86 TPVMKHYVTLKEENKDRLLLYRLGDFFECFFEDAVLISNLLEITLTSKDAGKEIGK-IPM 144 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSL-VRRNVVRLVTPGTLTED 142 GVP H Y LIK H + IC+Q+E K GN ++R + R++TPGT+ E+ Sbjct: 145 AGVPHHAMERYCADLIKKNHSVVICDQLE-----KSSGNYGTPIKRGITRIITPGTVIEE 199 Query: 143 QLLSPTDSNYLMAV------ARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPR 195 +L +N++ A+ + EW I+ D+STG + + + +L +I+++D Sbjct: 200 GMLVAKKNNWITAIYLSEENSDESYEWGISKADVSTGELITLQGHSLSKLFDEIIKLDSS 259 Query: 196 EIIFSE--------KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVD 247 EII +E S Y ET N + + N I +Y+ I ++ Sbjct: 260 EIIVGSNAVRDLLIRENSQITYTVSQET--NFGINEANYL---------IKNYFQIANLE 308 Query: 248 TFGSFSQVEKTAAAAAI-SYIKKTQMVN-------KPTIGYPEREDIQSTLFIDSAARSN 299 G + T + + +Y++K N K ++ +P+ + + L ID + N Sbjct: 309 GIGLKNLTNATRSLGGLLNYLEKINPSNLDKDSSVKISLDFPQIQFGHNKLIIDYQTQKN 368 Query: 300 LEILRTLSGSREQ----SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFI 355 LEI T RE SLL +ID + T G R I SPL I R + I FI Sbjct: 369 LEIKNT---QRENNYVGSLLWSIDRTYTCMGARCLRRWIDSPLLSVNDIYKRQNIITNFI 425 Query: 356 QNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSG---INILNLFLKND 412 ++ L Q +L++ D+ R R G P+D+ I +G++ +I+ LF + D Sbjct: 426 ESKQLRIDTQNLLRAMGDLERLAGRACAGHASPRDLIAIAEGLKKLPRLKSIIELF-RYD 484 Query: 413 LPEELRGAVEKLKKLPQSL---EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRD 469 LP+ ++LK + + L +S L ++ P +GG + DG D LD R+L D Sbjct: 485 LPD----WTDQLKNIDEGLLELADIISFKLIENPPLSISEGGMIHDGVDNILDGLRNLMD 540 Query: 470 QSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTM 529 + +LK + +KI NLKI+ + N GY+I + S ++ + +I RQT+ Sbjct: 541 DYSEWLNKEELKERKISKISNLKIQFHKNFGYYISINKSKVNL------APQHWIKRQTL 594 Query: 530 SNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDIS 589 +N R+ T E+ + EN+I + A E E F L N + E+++ + + ++ IA +D Sbjct: 595 TNEERYITSEIKNKENKIFQIKSRASSREYEIFCELRNIVAEKTKQIRSIAKSIASLDAL 654 Query: 590 IALAILAKEQNYCRPII--------DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDL 641 + L+I + E N+ +P + NST I GR+PIVE+ L + K FIAND Sbjct: 655 LGLSITSVENNFIKPSLIPINDSTTKNSTKIIA--GRNPIVEQLL---NDKQFIANDISF 709 Query: 642 SCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVG 701 + + KL +LTGPN GKS F+RQ LI I+AQ+GS+VPA+ A I I D++F+R+G Sbjct: 710 -----EENQKLIILTGPNASGKSCFIRQLGLIQILAQIGSFVPANNAEIKIADRIFTRIG 764 Query: 702 SADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHET 761 + D+ +SG+STFMVEM ETASILNQAT+ S V+LDEIGRGT+T DGLSIAW+ EYL + Sbjct: 765 AVDDQSSGQSTFMVEMSETASILNQATSSSLVLLDEIGRGTSTFDGLSIAWSVSEYLAKI 824 Query: 762 NRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKL 821 +C + ATH+HEL L S K N + V +N+ +IF H+++ G ++ SYGI+ KL Sbjct: 825 IQCNTIFATHYHELNYLKNSNKNIQNFQVLVEQNNDQLIFSHRIVKGGSNKSYGIEAAKL 884 Query: 822 AGLPNTVISRAYDILKTFEK 841 AG+P VI +A +L + E+ Sbjct: 885 AGVPKEVIEKAKSVLNSLEE 904 >gi|123967068|ref|YP_001012149.1| DNA mismatch repair protein MutS [Prochlorococcus marinus str. MIT 9515] gi|123201434|gb|ABM73042.1| putative DNA mismatch repair protein [Prochlorococcus marinus str. MIT 9515] Length = 914 Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust. Identities = 309/854 (36%), Positives = 474/854 (55%), Gaps = 73/854 (8%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TP+++ Y+++K N D L+ YR+GDF+E FF+DA+L S L ITLT + GK +GK IPM Sbjct: 86 TPILKHYVKLKEENSDRLLLYRLGDFFECFFEDAVLISNLLEITLTSKDAGKEIGK-IPM 144 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGN-KSLVRRNVVRLVTPGTLTED 142 GVP H Y +LIK + + IC+Q+E K GN + ++R V R++TPGT+ E+ Sbjct: 145 AGVPHHAMERYCAELIKKNNSVVICDQLE-----KSTGNYGTPLKRGVTRIITPGTVIEE 199 Query: 143 QLLSPTDSNYLMAVARIRT------EWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPR 195 +L +N++ A+ + EW I+ D+STG + + + +L +++++D Sbjct: 200 GMLVAKKNNWITAIHLSKNISENLDEWGISRADVSTGELLTMEGKSLPKLFDELVKLDTS 259 Query: 196 EIIFSEKELSHAEYKSLFETLG---NVAVAQPNVFFDHSISESRIADYYNITTVDTFGSF 252 EII + E KSL E V Q FF + + S I +Y+ I +++ G Sbjct: 260 EII-----IGSNEEKSLLEEQNENITYTVTQE-TFFSINEASSTIKNYFQILSLEGLGLK 313 Query: 253 SQVEKTAAAAAI-SYIKKTQMVN-------KPTIGYPEREDIQSTLFIDSAARSNLEILR 304 + T A + +Y++K N + ++ +P+ + + L ID + NLEI Sbjct: 314 NLNNATKALGGLLNYLEKINPSNLENDSSLRISLDFPQIQFPKDHLIIDYQTQKNLEIKN 373 Query: 305 TLSGSREQ----SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL 360 T RE SLL +ID + T G R I SPL D +I R + I+ F+++ L Sbjct: 374 T---QRENNYAGSLLWSIDKTYTCMGARCLRRWIDSPLLDIDEICKRQNIISNFLESKKL 430 Query: 361 INPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSG---INILNLFLKNDLP--- 414 Q IL++ D+ R R G P+D+ I +G++ +I+NLF K +P Sbjct: 431 RIDTQNILRAMGDLERLSGRACAGHASPRDLIAISEGLKKLPKLKSIVNLF-KYKIPSWT 489 Query: 415 EELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRI 474 ++L+ +L +L +S L + P +GG + DG D LD R+L D Sbjct: 490 DQLKNVDNELLELAD----LISFKLVGNPPLNTSEGGIIHDGVDNVLDGLRNLIDDYSDW 545 Query: 475 IASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTR 534 + +LK + +KI NLKI+ + N GY+I + S ++ + D +I RQT++N R Sbjct: 546 LNEEELKERKISKISNLKIQFHKNFGYYISINKSKVNL------APDHWIKRQTLTNEER 599 Query: 535 FTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAI 594 + T E+ + E++I N A E E F + N + +++ + + ++ IA ID + L+I Sbjct: 600 YVTTEIKNKESKIFQVKNRAAAKEYELFCEIRNLVASKTKKIRSIAKSIACIDALLGLSI 659 Query: 595 LAKEQNYCRPI---IDNSTNF----IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDK 647 + E N+ +P I NST I+K GR+PIVE+ L ++K FI+ND + Sbjct: 660 TSLENNFIKPTLLPIQNSTTQQSTEIIK-GRNPIVEQLL---TNKEFISNDILFN----- 710 Query: 648 NSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLA 707 N KL +LTGPN GKS F+RQ LI I++Q+GS++PAS A+I I D++F+R+G+ D+ + Sbjct: 711 NKQKLIILTGPNASGKSCFIRQIGLIQILSQIGSFIPASKANIQIADRIFTRIGAVDDQS 770 Query: 708 SGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGL 767 SG+STFMVEM ETASILNQAT+ S V+LDEIGRGT+T DGLSIAW+ EYL + C + Sbjct: 771 SGQSTFMVEMSETASILNQATSNSLVLLDEIGRGTSTFDGLSIAWSVSEYLAKKIVCNTI 830 Query: 768 LATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNT 827 ATH+HEL L + K N + V + + F HK+ G A+ SYGI+ KLAG+P Sbjct: 831 FATHYHELNYLKNTNKNVENFQVLVKQKKDQLYFCHKITKGGANKSYGIEAAKLAGVPKE 890 Query: 828 VISRAYDILKTFEK 841 VI +A +L EK Sbjct: 891 VIDKAKLVLDYLEK 904 >gi|256854835|ref|ZP_05560199.1| DNA mismatch repair protein mutS [Enterococcus faecalis T8] gi|256710395|gb|EEU25439.1| DNA mismatch repair protein mutS [Enterococcus faecalis T8] gi|315028309|gb|EFT40241.1| DNA mismatch repair protein MutS [Enterococcus faecalis TX4000] Length = 858 Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust. Identities = 292/900 (32%), Positives = 489/900 (54%), Gaps = 77/900 (8%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM QY+ IK+ D+ +FYR+GDFYELF++DA+ A++ L +TLT R ++ IPMC Sbjct: 7 NTPMMEQYLSIKAQYKDAFLFYRLGDFYELFYEDAINAAQILELTLTSRNRNADDPIPMC 66 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H A YI LI+ G+++AICEQ+E P + K +V+R VV+LVTPGT+ + Sbjct: 67 GVPYHAAQGYIDTLIEQGYKVAICEQVEDP-----KTTKGMVKREVVQLVTPGTVMNSKG 121 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 L +NYL AV ++ A++D+STG K + ++ + ++++ + +E++ Sbjct: 122 LEAKANNYLTAVLTDGNQFGFAYVDLSTGELKTAVLADEEGVLNEASALQTKEMVLG--- 178 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + E+L + N+ F + A++ +T + +E Sbjct: 179 ------SGIPESLKENLSLRLNIIFSTQETVEENAEFSFLTN----ELINPLEIEITGKL 228 Query: 264 ISYIKKTQMVNKPTIGYPERE-DIQSTLFI--DSAARSNLEILRTL-SGSREQSLLKTID 319 +SY+ TQ K ++ + ++ + Q F+ D ++ NLE+ +++ +G ++ +LL +D Sbjct: 229 LSYLSVTQ---KRSLSHIQKAVEYQPDYFLKMDHYSKFNLELSQSIRTGQKKGTLLWLLD 285 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T GGRL + + PL +I R + + + +Q L + D+ R Sbjct: 286 ETKTAMGGRLLKQWLDRPLIQERQIKMRQEMVQSLLNAYFERLDLQAALTNVYDLERLAG 345 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLK------NDLPEELRGAVEKLKKLPQSLEK 433 R+ G +D+ +R + I L + +DL +L VE L L Sbjct: 346 RVAFGSVNGRDLIQLRTSLEQVPTIRQLIVGINQGEWDDLLVDL-NPVEDLVAL------ 398 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 +++ ++++ P +G ++DG + LDE R K+ +A L+ K +ET IKNLKI Sbjct: 399 -IATAINEEAPLQITEGNVIKDGYNDQLDEYRDAMRNGKQWLAELEAKERQETGIKNLKI 457 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GYFIE+T S+ + L++ ++ +QT++N RF T EL +LE I A Sbjct: 458 GYNRVFGYFIEITKSNLANLEEG-----KYERKQTLANAERFITPELKELERLILEAEEK 512 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII-DNSTNF 612 ++ +E + F + + + L ++ I+ +D+ + A +++ Y RP + N+ N Sbjct: 513 SVELEYQLFLAVREQVKTNIDRLQTLAKTISAVDVLQSFATISERYQYVRPTLRSNTKNL 572 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 + +GRHP+VEK L Q +I N ++ D + L+TGPNM GKST++RQ AL Sbjct: 573 AIVEGRHPVVEKVLGHQE---YIPNSIRMNPETD-----ILLITGPNMSGKSTYMRQLAL 624 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 V+MAQ+G +VPA A + I D++F+R+G++D+L +G+STFMVEM+E L AT S Sbjct: 625 TVVMAQIGCFVPAESAEMPIFDQIFTRIGASDDLIAGQSTFMVEMMEANQALRHATPNSL 684 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 ++ DE+GRGTAT DG+++A A IEY+H + + L +TH+HELT L ++LK N + Sbjct: 685 ILFDELGRGTATYDGMALAQAIIEYIHREVQAKTLFSTHYHELTVLDETLKGLKNIHVGA 744 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE------------ 840 + + ++FLHK++ G AD SYGI V K+AGLP+ ++ RA IL E Sbjct: 745 VEKDGEVVFLHKMMEGPADKSYGIHVAKIAGLPSPLLERAATILSALEAEETTIPSSVHH 804 Query: 841 --KLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 H + + + E+ T+E LS ++ +K +NL EM+PL AL L+ ++ Sbjct: 805 EEVSEVHEETEQLSLFKEVSTEE----LS-----VIDTLKKMNLLEMTPLDALNMLHQLQ 855 >gi|219681780|ref|YP_002468166.1| DNA mismatch repair protein [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471482|ref|ZP_05635481.1| DNA mismatch repair protein MutS [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|254766618|sp|B8D9K7|MUTS_BUCA5 RecName: Full=DNA mismatch repair protein mutS gi|219624623|gb|ACL30778.1| DNA mismatch repair protein [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 802 Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust. Identities = 284/829 (34%), Positives = 478/829 (57%), Gaps = 54/829 (6%) Query: 17 DLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKH 76 +++ ++ + TPM++QY+ +KS PD L+FY+MGDFYELF++DA S L ITLTK+G Sbjct: 5 NIKNSMNNHTPMIKQYLSLKSQYPDMLLFYQMGDFYELFYEDAERISELLKITLTKKGYS 64 Query: 77 LGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTP 136 K IPM GVP H + +Y+ KL+K+G IAIC+Q + + KK+ L+ R VVR++TP Sbjct: 65 NHKIIPMAGVPCHKSEYYLSKLVKLGESIAICDQ-QKETDCKKK----LISRKVVRIITP 119 Query: 137 GTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST--SNHDRLISDIMRIDP 194 GT+T++ LL + N++ A+ + ++ + +D+S G F +S S+ D L+S+I R +P Sbjct: 120 GTVTDEVLLEENEDNFIAAIWKENNQFGYSVLDLSLGFFGVSKIFSSCD-LLSEIERTNP 178 Query: 195 REIIFSEKELSHAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFS 253 +EI++ E + +F + + ++ FD S + +N ++D FG Sbjct: 179 KEILYPE------NFSDVFLIESRKCIRKRSLLEFDLETSYKLLNLQFNTCSLDGFG--- 229 Query: 254 QVEKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG 308 +EK AA + Y+K M P I + ++ ++F++ + R +LEI + +SG Sbjct: 230 -IEKNNFVIRAAGCLLQYVKSMNMTVLPNIRQLKYNYMEDSIFMNFSTRKSLEITQNISG 288 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTR---LDSINFFIQNPILINPIQ 365 ++ +L ++ ++T G R+ + SPL + + R ++++ FF + +Q Sbjct: 289 EKKNTLSAILNKTVTSMGSRMLNRWLNSPLKNFKIVRNRHESVEALKFFYKE------LQ 342 Query: 366 KILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG--IRSGINILNLFLKNDLPEELRGAVEK 423 IL+ D+ R SRL + P D +R I ++++ +K+ +++R ++ Sbjct: 343 FILRQVNDLERIYSRLALRTASPHDFVRMRSTLEILPNLHLILKKIKSKHIKKIRLSIGY 402 Query: 424 LKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 +++ L+K +S S + RDGG + + + LDE RS++ SK I + + K Sbjct: 403 FEEVLCLLKKAISLKPSKCI----RDGGVIAELYNIELDELRSIKINSKEYIKNFEQKEK 458 Query: 484 EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDL 543 ++ I++ KIK N +GY+I+++ ++ K ++ QT+ N R++ L + Sbjct: 459 KKLMIESFKIKFNKIIGYYIQISKRHTHLIPK------YYVIIQTLKNTERYSVPLLKEY 512 Query: 544 ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCR 603 E ++ N+ +LL+E + + + N I E L N++ ++ +D+ + L+ A NY R Sbjct: 513 EEKVLNSEMRSLLLEKKLYAEIFNIIEPFLEKLQNSALALSELDVLVNLSERAISLNYTR 572 Query: 604 PIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 PI+ + + RHP+VE LK PFI N LS + ++ ++TGPNMGGK Sbjct: 573 PIMSEKYGISLLESRHPVVECFLKT----PFIKNSVFLS-----RTQRMIIITGPNMGGK 623 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 ST++RQ ALIVIMA +GS+VPA YA IG +DK+F+R+GSAD+L++G STFM+EM+E ++I Sbjct: 624 STYMRQIALIVIMAGIGSFVPARYALIGSIDKIFTRIGSADDLSNGYSTFMMEMMEISNI 683 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLK 783 L+ AT+ S V++DE+GRGT+T +GLS+AW+ YL N+ LL+THF ELT L + K Sbjct: 684 LHNATSNSLVLIDELGRGTSTNEGLSLAWSCSRYLININKSMTLLSTHFVELTKLEEKEK 743 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 N S+ I FL+K+ GI+ SYGI V L+GLP++V+ A Sbjct: 744 FVKNFHFSAIKSDLHIAFLYKIKNGISKKSYGISVASLSGLPDSVLEDA 792 >gi|329117512|ref|ZP_08246229.1| DNA mismatch repair protein MutS [Streptococcus parauberis NCFD 2020] gi|326907917|gb|EGE54831.1| DNA mismatch repair protein MutS [Streptococcus parauberis NCFD 2020] Length = 851 Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust. Identities = 290/888 (32%), Positives = 482/888 (54%), Gaps = 61/888 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L I LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKVNYPDAFLLFRMGDFYELFYDDAVKAAQILEIGLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI+ G+++AI EQ+E P +A +V+R VV+++TPGT+ + Sbjct: 67 VPHHSAQQYIDVLIEQGYKVAIAEQMEDPKKAV-----GVVKREVVQVITPGTVVDSA-- 119 Query: 146 SPTDSN-YLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 PT SN +L+A+ + + +A++D++TG F ++ + + S+I+ + +E++ + Sbjct: 120 KPTSSNNFLVAIDYNGSNYGLAYMDLATGEFFVTALEDFASICSEILNLKAKEVLVG-YD 178 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHS---ISESRIADYYNITTVDTFGSFSQVEKTAA 260 LS E + L V Q N+ + I +S++ D + S +EK A Sbjct: 179 LSGQEEEIL--------VKQYNLLLSYEEEEIDDSKLLD----------NNLSIIEKMVA 220 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 + ++Y+ TQM + + +I L + A +S+L++L +G + SL +D Sbjct: 221 SKLLAYVHHTQMRDLIHLQKVVHYEINDYLQMSYATKSSLDLLENARTGKKHGSLYWLLD 280 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL I PL + R + I + N I + + LK D+ R S Sbjct: 281 QTKTAMGMRLLRAWIDRPLISKEAVIQRQEIIQVLLDNFIERSDLSDSLKGVYDIERLSS 340 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ G+ PKD+ + + I + D P L G + + +P+ LE + S + Sbjct: 341 RVSFGKVNPKDLLQLGHTLAQVPTIKAILESMDSPH-LEGLIAGIDPIPE-LEHLIQSAI 398 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 D P +G ++ G D LD R + + IA +++K + + I NLKI +N Sbjct: 399 DPDAPATISEGNIIKTGFDKQLDHYRKVMKEGTGWIADIEMKERQASGINNLKIDYNKKD 458 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+ VT+S+ S++ D F + T+ N R+ T EL +E ++ A + +E Sbjct: 459 GYYFHVTNSNLSLVP------DHFFRKATLKNSERYGTTELAKIEGQMLEAREESSTLEY 512 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 + F L + + + L ++ IA +D+ +LA++A++ +Y RP + + +GRH Sbjct: 513 DIFMQLRSRVENYIDRLQQLAKSIAAVDVLQSLAVVAEKNHYIRPSFTDHQEINIINGRH 572 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 +VEK + S K +I N S + + L+TGPNM GKST++RQ AL IMAQ+ Sbjct: 573 AVVEKVM---SVKEYIPNTIQFSQETN-----IQLITGPNMSGKSTYMRQLALTSIMAQL 624 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYV A A I I D +F+R+G+AD+L SG+STFMVEM+E + A+ +S ++ DE+G Sbjct: 625 GSYVAADLAEIPIFDAIFTRIGAADDLISGQSTFMVEMMEANQAIKGASPRSLILFDELG 684 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A + IE++H+ + + ATH+HELTDLS LK N + + N + Sbjct: 685 RGTATYDGMALAQSIIEFIHDHVGAKTMFATHYHELTDLSSRLKSLTNVHVATLEENGEV 744 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 FLHK+ G AD SYGI V K+AGLP ++ RA IL+ E + + L ++ Sbjct: 745 TFLHKIAQGPADKSYGIHVAKIAGLPKELLQRADAILQKLE----NQSTQLTLVANAEES 800 Query: 860 KESKNNLSKNDKLF---------VEKIKCLNLDEMSPLTALKTLYAVK 898 ++++ + ++ +LF +E++K +++ M+P+ A+ LY +K Sbjct: 801 QQAQTDKNQQLELFAPDAEENQVIEQLKAMDVINMTPMEAMTALYELK 848 >gi|326803738|ref|YP_004321556.1| DNA mismatch repair protein MutS [Aerococcus urinae ACS-120-V-Col10a] gi|326650969|gb|AEA01152.1| DNA mismatch repair protein MutS [Aerococcus urinae ACS-120-V-Col10a] Length = 855 Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust. Identities = 300/889 (33%), Positives = 485/889 (54%), Gaps = 67/889 (7%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY +IK PD+ +F+R+GDFYE+F DDA A++ L ITLT R ++ IPMCGVP Sbjct: 1 MMEQYYQIKDQYPDAFLFFRLGDFYEMFDDDAKKAAQILEITLTSRNRNADDPIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H+A+ Y++ L+ G+++AI EQ+E P +AK +V R V++++TPGT S Sbjct: 61 YHSADEYVKTLVNQGYKVAIAEQMEDPKQAK-----GMVDRQVIKVITPGTYYNS---SD 112 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKELSH 206 ++ ++ A+ +A+A+ DISTG K++ S + L+++ +I +E++F Sbjct: 113 KENVFICAIIHQEGAYALAYTDISTGELKVTHMSAFEMLLTEFSQIQAKEVVF------- 165 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVD-----TFGSFSQ-----VE 256 + L +AQ F + A Y N T+D F +Q +E Sbjct: 166 ------YHELREEDLAQLEQLFPFT------ASYINRKTLDQLPETAFEKITQNIKHRIE 213 Query: 257 KTAAAAAISYIKKTQ--MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQS 313 A ++Y+ TQ MVN E ++ L +D A+ NLE+ ++ + R S Sbjct: 214 LKALRVLMAYVYSTQFRMVNHWRQA--ESYELDYYLHMDYFAKRNLELTESIRTQKRSGS 271 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T GGRL + + PL I RLD + I IQ+ L D Sbjct: 272 LLHFLDETKTAMGGRLLRQWLDRPLIIQATIEERLDQVESLIDAFFERRNIQENLSGVYD 331 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINIL-NLFLKNDLPEELR--GAVEKL----KK 426 + R ++++ +G+ +++ + + ++ + NL D P + + G KL Sbjct: 332 LERLVAKISMGQVNARELLQLMNSLKKVPQVSENLQAIQDNPSDRQETGVWNKLLNSLAA 391 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 LP+ +E T+ S + + +GG +RDG LD+ R IA+LQ K E T Sbjct: 392 LPEVVE-TIESAIDPEANISITEGGIIRDGFSDQLDDYRQAIRHGSEWIANLQAKEREAT 450 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 IK+LKI +N GY+IEVT ++ +L + R+ +QT++N RF T EL ++E R Sbjct: 451 GIKSLKIGYNKVFGYYIEVTKANLHLL-----PEGRYERKQTLTNAERFITPELKEMEYR 505 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 I A ++ +E E F + I + L +Q +A +D+ +LA ++++ Y RP Sbjct: 506 ILEAQEKSVDLEYELFLGVREKIKVYQKDLQAIAQAVAQVDVIQSLAEISEQNQYVRPHF 565 Query: 607 DNSTN-FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKST 665 ++KD RHP+VE+TL + F+ ND + DK++ L L+TGPNM GKST Sbjct: 566 SREDRALLLKDSRHPVVEETLGRDD---FVPNDIIM----DKDTCIL-LITGPNMSGKST 617 Query: 666 FLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILN 725 ++RQ L VIMAQMGS+VPAS A + I D++F+R+G+ D+L +G+STFMVEM+E + Sbjct: 618 YMRQLGLTVIMAQMGSFVPASQATLPIFDQIFTRIGATDDLQAGQSTFMVEMMEANQAIQ 677 Query: 726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRF 785 AT++S ++ DEIGRGT+T DG+++A A +EYL++ + + L +TH+HELTDL L Sbjct: 678 HATDRSLLLFDEIGRGTSTYDGIALAQAILEYLNDHLKAKVLFSTHYHELTDLDNHLPAL 737 Query: 786 HNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH 845 N + + + ++FLHKV G AD SYGI V KLAGLP ++++ A +IL E Sbjct: 738 KNIHVGAIEKDGEVVFLHKVYDGPADKSYGIHVAKLAGLPKSLLANAANILSDLESEAAK 797 Query: 846 NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 + +L +E+ N ++ ++++ ++++ +SP+ AL+ L Sbjct: 798 GAEPKQLNL--FTDQENFNQKKASEDYVLDQLDAVDINHLSPIEALELL 844 >gi|125625247|ref|YP_001033730.1| DNA mismatch repair protein [Lactococcus lactis subsp. cremoris MG1363] gi|189083180|sp|A2RP10|MUTS_LACLM RecName: Full=DNA mismatch repair protein mutS gi|124494055|emb|CAL99055.1| DNA mismatch repair protein mutS [Lactococcus lactis subsp. cremoris MG1363] gi|300072057|gb|ADJ61457.1| DNA mismatch repair protein MutS [Lactococcus lactis subsp. cremoris NZ9000] Length = 840 Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust. Identities = 292/884 (33%), Positives = 486/884 (54%), Gaps = 63/884 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L +TLT R K+ IPM G Sbjct: 6 SPGMQQYLDIKQDYPDAFLLFRMGDFYELFYEDAVNAAQILELTLTSRNKNSENPIPMAG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A YI KL+ +G+++A+ EQ+E P +A +V+R V +++TPGT + Sbjct: 66 VPHHAATEYIDKLVDLGYKVAVAEQMEDPKKAV-----GIVKRAVTQVITPGTTIDTA-- 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204 + D+N+L+A+ +A++++D+STG FK++ S ++ +I + REI+ L Sbjct: 119 NSVDNNFLVAIDFKAKRYALSYMDLSTGEFKVTELSEFSAVVGEIASLKAREIVVGFP-L 177 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 A+ K +FE N+ +++ I E+ + + +T + E AA+ + Sbjct: 178 DEAQVK-VFERQMNLLISE-----QFEIPENLLIELSGLTAL---------ENQAASKLL 222 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT 323 +Y+K+TQM + + E +I+ L +D A +S+LE+ +++ +L +D + T Sbjct: 223 AYVKETQMRDLSHLQEVEHYEIKDFLQMDFATKSSLELTANKRENKKHGTLYWLLDETKT 282 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G R+ I PL ++ I R++ + F+ + + + + LK D+ R SR+ Sbjct: 283 AMGTRMLRSWIDRPLVSNSAIQKRMEIVQVFLDHFFERSDLIEALKGVYDLERLASRVSF 342 Query: 384 GRGEPKDIAVIRDGIRSGINILNLF-LKNDLP-EELRGAVEKLKKLPQSLEKTLSSMLSD 441 G+ P D + + + + I N+ + +++P ELR +L ++P+ L ++S +S+ Sbjct: 343 GKAVPVDFLQLANSLSNVPAIKNILEVLDEMPLNELRS---QLDEIPE-LSGLINSAISE 398 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + +GG ++ G + LD+ R + IA L+ +T I L+I +N GY Sbjct: 399 NASRTITEGGIIKKGYNVQLDKYREALENGTSWIAKLEADEKAKTGISTLRIDYNRKDGY 458 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 + +T S + + + F + T+ N RF + EL ++E + A + +E + Sbjct: 459 YFHITQSQLNSVP------EHFYRKATLKNSERFGSQELTEIEEIMLEAREKSSSLEYDL 512 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI-VKDGRHP 620 F L + L ++ IA ID +L+++A++Q Y RP + + + +K GRH Sbjct: 513 FMGLRAETEQYIGRLQALAKTIAEIDCLQSLSVVAEKQGYIRPTLTEGSRIVEIKGGRHA 572 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE + Q ++ ND +L D + L+TGPNM GKST++RQ AL VIMAQ+G Sbjct: 573 VVEAVMGAQE---YVPNDIELPEQTD-----IQLITGPNMSGKSTYMRQFALTVIMAQIG 624 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA A++ I D +F+R+G++DNL SG STFMVEM E + +AT++S +I DE+GR Sbjct: 625 SFVPAETANLPIFDAIFTRIGASDNLISGESTFMVEMSEANHAIQKATSRSLIIFDELGR 684 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A IEY+HE + L ATH+HELTDL K L N + + N + Sbjct: 685 GTATYDGMALAQAIIEYVHEHIGAKTLFATHYHELTDLDKELDHLDNVHVATLEQNGNVT 744 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE------KLYHHNQKDMRLYY 854 FLHK+ G AD SYGI V K+AGLP T++ RA IL+ E K Q+ + L+ Sbjct: 745 FLHKITDGPADKSYGIHVAKIAGLPQTLLERADLILQKLENKPLPAKKVADEQEQLSLF- 803 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + ++N +EKIK N+D M+ AL L+ +K Sbjct: 804 ----------DFAENSSEIIEKIKGQNVDNMTAREALNFLWELK 837 >gi|332363702|gb|EGJ41482.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK49] Length = 849 Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust. Identities = 292/889 (32%), Positives = 478/889 (53%), Gaps = 65/889 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYPDAFLLFRMGDFYELFYDDAINAAQILEISLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI L++ G+++AI EQ+E P EAK +V+R VV+++TPGT+ + Sbjct: 67 VPYHSAQQYIDVLVESGYKVAIAEQMEDPKEAK-----GVVKREVVQVITPGTVVDS--- 118 Query: 146 SPTDS--NYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEK 202 S DS N+L+A+ + + +A++D+ TG F++++ L+ +I + RE++ Sbjct: 119 SKPDSANNFLVALDYSDSLYGLAYMDLVTGEFQVTSLEDFSLVCGEIRNLKAREVVLG-- 176 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS-FSQVEKTAAA 261 +L E V Q N+ S ++ + D V G S +E+ AA Sbjct: 177 -------YTLPEAEEQVLAGQMNLLL--SYVQTALDD------VQLLGEELSPMERQAAG 221 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 + Y+ +TQM + + +I+ L +D A +++L++ SG + SL +D Sbjct: 222 KLLEYVHRTQMRELSHLKKAQHYEIKDFLQMDYATKASLDLTENARSGKKHGSLYWLMDE 281 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGR+ I PL D +I+ R + + F+ + + + + LK D+ R SR Sbjct: 282 TKTAMGGRMLRSWIQRPLIDEARISQRQNVVEVFLDHFFERSDLTESLKGVYDIERLASR 341 Query: 381 LKIGRGEPKDIAVIRDGIRSGINI--LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 + G+ PKD+ + + +N+ + L+ L +E L +P+ L +SS Sbjct: 342 VSFGKTNPKDLLQLAATL---VNVPQIKAILQGIGSSHLARLIEGLDPIPE-LAGLISSA 397 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 +S D P +G +R G D +LD+ R + + IA L++K + I NLKI +N Sbjct: 398 ISPDAPHIITEGNIIRTGFDETLDQYRLVLREGTGWIAELEVKERANSGISNLKIDYNKK 457 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+ VT+S + F + T+ N RF T EL +E + A + +E Sbjct: 458 DGYYFHVTNSQLA------HVPSHFFRKATLKNSERFGTEELARIEGEMLEAREKSANLE 511 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 E F + + + L +Q +A +D+ + A +A++ + RP+ ++ GR Sbjct: 512 YEIFMRIREEAGKYIQRLQALAQTLAAVDVLQSFAAVAEQLHLVRPVFTAERCLQIEKGR 571 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 H +VEK + QS +I N L D + L+TG NM GKST++RQ A+IVIMAQ Sbjct: 572 HAVVEKVMGAQS---YIPNSILLDQETD-----IQLITGHNMSGKSTYMRQLAIIVIMAQ 623 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 MGSYVPA A + + D +F+R+G+AD+L SG+STFMVEM+E + QA+ +S ++ DE+ Sbjct: 624 MGSYVPAQSASLPLFDAIFTRIGAADDLVSGQSTFMVEMMEANRAIRQASERSLILFDEL 683 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGTAT DG+++A A IE++H + L ATH+HELT L SL+ N + + + Sbjct: 684 GRGTATYDGMALAQAIIEHIHHYTGAKTLFATHYHELTALEDSLEHLENVHVATLEKDGQ 743 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP-EI 857 + FLHK+ PG AD SYGI V K+AGLP ++ RA +IL H +D L Sbjct: 744 VTFLHKIEPGPADKSYGIHVAKIAGLPEKLLERADNILS------HLESQDTGLGSELPT 797 Query: 858 QTKESKNNLSKNDKLFVE--------KIKCLNLDEMSPLTALKTLYAVK 898 ++++ ++ +++ LF E +++ L++ M+PL + + +K Sbjct: 798 ESRQKRSQVAEQMSLFAEGTENPILTELRDLDIYNMTPLEVMAAVAELK 846 >gi|15644466|ref|NP_229518.1| DNA mismatch repair protein MutS [Thermotoga maritima MSB8] gi|6226653|sp|P74926|MUTS_THEMA RecName: Full=DNA mismatch repair protein mutS gi|4982296|gb|AAD36785.1|AE001811_5 DNA mismatch repair protein [Thermotoga maritima MSB8] Length = 793 Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust. Identities = 293/824 (35%), Positives = 458/824 (55%), Gaps = 52/824 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M QY+ IK DS++ +R+GDFYE FF+DA + S+ L I LT+R +D PM G Sbjct: 4 TPLMEQYLRIKEQYKDSILLFRLGDFYEAFFEDAKIVSKVLNIVLTRR-----QDAPMAG 58 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H N Y++KL++ G+++AIC+Q+E P ++KK L+RR V R+VTPG++ ED+ L Sbjct: 59 IPYHALNTYLKKLVEAGYKVAICDQMEEPSKSKK-----LIRREVTRVVTPGSIVEDEFL 113 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMR-IDPREIIFSEKEL 204 S T+ NY+ V+ + + + D+STG + S+ ++ D+++ +II E Sbjct: 114 SETN-NYMAVVSEEKGRYCTVFCDVSTGEVLVHESSDEQETLDLLKNYSISQIICPEHLK 172 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S SL E V + ++ + E A YN+ + F S + A AA I Sbjct: 173 S-----SLKERFPGVYTETISEWYFSDLEEVEKA--YNLKDIHHF-ELSPLALKALAALI 224 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 Y+K T + + P + + +DSA NL ++ G R ++L ++ + T Sbjct: 225 KYVKYTMIAEDLNLKPPLLISQRDYMILDSATVENLSLI---PGDRGKNLFDVLNNTETP 281 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 G RL + I PL D +I RL ++ + + + + ++ +L + DV R +SR++ Sbjct: 282 MGARLLKKWILHPLVDRKQIEERLKAVERLVNDRVSLEEMRNLLSNVRDVERIVSRVEYN 341 Query: 385 RGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLP 444 R P+D+ +R+ + I LN L G +KL P+ L L + DD Sbjct: 342 RSVPRDLVALRETLEI-IPKLNEVLST------FGVFKKLA-FPEGLVDLLRKAIEDDPV 393 Query: 445 TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIE 504 +G ++ G + LDE R L + ++ + + K E T I+ L++ +N GY+IE Sbjct: 394 GSPGEGKVIKRGFSSELDEYRDLLEHAEERLKEFEEKERERTGIQKLRVGYNQVFGYYIE 453 Query: 505 VTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEI 564 VT ++ + D E K QT+ N RF T EL + E +I A +E E F+ Sbjct: 454 VTKANLDKIPDDYERK------QTLVNSERFITPELKEFETKIMAAKERIEELEKELFKS 507 Query: 565 LSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEK 624 + + + E L S+ +A ID LA A NY +P+ + +K GRHP+VE+ Sbjct: 508 VCEEVKKHKEVLLEISEDLAKIDALSTLAYDAIMYNYTKPVF-SEDRLEIKGGRHPVVER 566 Query: 625 TLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684 ++ F+ ND + N + ++TGPNM GKSTF+RQ LI +MAQ+GS+VP Sbjct: 567 F-----TQNFVENDIYMD-----NEKRFVVITGPNMSGKSTFIRQVGLISLMAQIGSFVP 616 Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744 A A + + D++F+R+G+ D+LA GRSTF+VEM E A IL ++TN+S V+LDE+GRGT+T Sbjct: 617 AQKAILPVFDRIFTRMGARDDLAGGRSTFLVEMNEMALILLKSTNKSLVLLDEVGRGTST 676 Query: 745 LDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHK 804 DG+SIAWA E L + C+ L ATHF ELT+L K + N T+ V + + +IF HK Sbjct: 677 QDGVSIAWAISEELIKRG-CKVLFATHFTELTELEKHFPQVQNKTILVKEEGKNVIFTHK 735 Query: 805 VIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 V+ G+AD SYGI+V K+AG+P+ VI+RAY+IL E+ + +N K Sbjct: 736 VVDGVADRSYGIEVAKIAGIPDRVINRAYEIL---ERNFKNNTK 776 >gi|312277474|gb|ADQ62131.1| Mismatch repair ATPase (MutS family) [Streptococcus thermophilus ND03] Length = 852 Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust. Identities = 274/820 (33%), Positives = 455/820 (55%), Gaps = 46/820 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKNYPDAFLLFRMGDFYELFYDDAVKAAQILEISLTSRNKNADNPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI L+++G+++AI EQ+E P +A +V+R VV+++TPGT+ + Sbjct: 67 VPYHSAQAYIDVLVEMGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTVVDS--- 118 Query: 146 SPTDS--NYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEK 202 S DS N+L+A+ ++ + + ++++D+STG F + + S+I + RE++ Sbjct: 119 SKPDSANNFLVAIDKVGSRFGLSYMDVSTGEFFATELDDFSSVCSEIQNLKAREVVVG-- 176 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAA 261 L ET + + ++ S+ + Y+ V G S + +E + A+ Sbjct: 177 -------YDLLET------DEQVLVNQLNLLLSKETEGYD--DVHLIGNSLTDLESSVAS 221 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 + Y+ +TQM + + +I+ L + A +S+L++L +G + SL +D Sbjct: 222 KLLQYVHRTQMRELSHLQKAQHYEIKDYLQMSYATKSSLDLLENARTGKKHGSLFWLLDK 281 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G RL I PL + I R + I F+ N + + + LK D+ R SR Sbjct: 282 TKTAMGMRLLRTWIDRPLVNQASIIERQNIIQVFLDNFFERSDLTESLKGVYDIERLASR 341 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + G+ PKD+ + + + + ++ L++ + L G +++L LP+ LE + S + Sbjct: 342 VSFGKANPKDLIQLGHTL-AQVPVIKAILESFNDDTLSGLLQELDALPE-LESLIRSAID 399 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D P +GG +RDG D +LD+ R + + IA ++ K E + I LKI +N G Sbjct: 400 PDAPATITEGGIIRDGFDETLDKYRKVMSEGTSWIADIEAKEREASGITTLKIDYNRKDG 459 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+ VT+S+ S++ D F + T+ N RF T EL +E + A + +E + Sbjct: 460 YYFHVTNSNLSLVP------DHFFRKATLKNSERFGTAELAKIEGEMLEAREKSSTLEYD 513 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F + + + L + ++ IA +D+ +LA+ A+ +Y RP+ ++ + GRH Sbjct: 514 IFMRVREQVERYIDRLQSLAKAIATVDVLQSLAVTAETNHYVRPVFNDEHRIAIDRGRHA 573 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + Q +I N + + L+TGPNM GKST++RQ AL V+MAQMG Sbjct: 574 VVEKVMGVQE---YIPNTITFDSQTN-----IQLITGPNMSGKSTYMRQLALSVVMAQMG 625 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 +YVPA + + D +++R+G+AD+L SG+STFMVEM+E + +AT S +I DE+GR Sbjct: 626 AYVPADSVDLPVFDAIYTRIGAADDLISGQSTFMVEMMEANQAIKRATPNSLIIFDELGR 685 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A + IE++H+ + + ATH+HELT LS SL N + + + + Sbjct: 686 GTATYDGMALAQSIIEFIHDKVGAKTMFATHYHELTALSNSLIHLVNVHVATLEKDGEVT 745 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 FLHK++ G AD SYGI V K+AGLP +++RA IL E Sbjct: 746 FLHKIVDGPADKSYGIHVAKIAGLPTDLLNRADTILTQLE 785 >gi|229000593|ref|ZP_04160133.1| DNA mismatch repair protein mutS [Bacillus mycoides Rock3-17] gi|229006015|ref|ZP_04163704.1| DNA mismatch repair protein mutS [Bacillus mycoides Rock1-4] gi|228755214|gb|EEM04570.1| DNA mismatch repair protein mutS [Bacillus mycoides Rock1-4] gi|228759148|gb|EEM08154.1| DNA mismatch repair protein mutS [Bacillus mycoides Rock3-17] Length = 906 Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust. Identities = 278/832 (33%), Positives = 470/832 (56%), Gaps = 63/832 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R IPMCG Sbjct: 21 TPMIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAIKAAHELEITLTSRDGGSSDRIPMCG 80 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 81 VPYHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTI 135 Query: 146 SPTDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEK 202 ++N+L A+ + +A+A D++TG ++ T + ++ ++ +EI+ + Sbjct: 136 DEKENNFLAALTQFEDGSYALACNDLTTGQNTVTLLTGTVEDVLLEVYATGSKEIVV-DS 194 Query: 203 ELSHAEYKSLFETLGNV-----AVAQPNVFFDH---SISESRIADYYNITTVDTFGSFSQ 254 S E L ETL A P +H S++++++ Sbjct: 195 TFSKDELNKLTETLKMTISYEDATKIPE-GLEHLVKSVTQTKLV---------------- 237 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSR 310 TA ++Y+ +TQ K ++ + + DI T + ID ++ NLE+ TL + + Sbjct: 238 ---TAVGRLLNYVLRTQ---KRSLDHLQPVDIYYTNQFMKIDVHSKRNLELTETLRTKEK 291 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 SLL +D + T GGR+ + + PL I RL+ + F+ + L +++ LK Sbjct: 292 TGSLLWLLDKTKTAMGGRMLKQWMERPLIQKDNIEERLEMVETFVNDYFLREDLKEKLKE 351 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLP 428 D+ R ++ G +D+ +R + IL L N L + Sbjct: 352 VYDLERLAGKVAYGNVNARDLLQLRRSLLQVPAILEAISLLDNSYAARLIQGADPC---- 407 Query: 429 QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 +SL + L + ++ P +DG ++DG + LD+ R + K IA L+ + + T I Sbjct: 408 ESLTELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGI 467 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 K+LKI +N GY+IEVT ++ S L + R+ +QT++N RF T EL + E I Sbjct: 468 KSLKIGYNRIFGYYIEVTKANLSAL-----PEGRYERKQTLANAERFVTDELKEKETLIL 522 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 A + +E + F +L + L + ++VI+ +D+ + A +++E+ + +P++ + Sbjct: 523 EAEEKIVQLEYDLFTVLREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTD 582 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++R Sbjct: 583 KREIFIKDGRHPVVEKVL---NGKLYVPNDCMMPENMD-----VFLITGPNMSGKSTYMR 634 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q ALI +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ Sbjct: 635 QLALITVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANAS 694 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA 788 +S ++ DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L +SL+R N Sbjct: 695 ERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLERLKNV 754 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 755 HVSAIEENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 806 >gi|325955087|ref|YP_004238747.1| DNA mismatch repair protein mutS [Weeksella virosa DSM 16922] gi|323437705|gb|ADX68169.1| DNA mismatch repair protein mutS [Weeksella virosa DSM 16922] Length = 864 Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust. Identities = 288/885 (32%), Positives = 481/885 (54%), Gaps = 41/885 (4%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TP+M+QY IK+ PD+L+ +R+GDFYE F +DA+ + L I LTKR KD Sbjct: 7 KKETPLMKQYNTIKAKYPDALLLFRVGDFYETFGEDAIKCANILDIVLTKRANGSEKDKE 66 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 + G P H+ N Y+ KL+K G R+AIC+Q+E P AK +V+R V LVTPG D Sbjct: 67 LAGFPHHSLNTYLPKLVKAGLRVAICDQLEDPKTAK-----GIVKRGVTELVTPGVALND 121 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK 202 ++L+ +N+LMA+ + A +D+STG F + + L I P EII ++ Sbjct: 122 EVLNAKKNNFLMAIHHQDKLFGAALLDLSTGEFLVFEGSQVELKKIIQSYQPSEIITQKR 181 Query: 203 EL-SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAA 260 + E K++F+ L + A F + ++ ++ ++ FG S + AA Sbjct: 182 TVYPFIENKNIFQ-LEDWA-------FQRDYALDKLLTHFQTNSLKGFGLDDSSLGVIAA 233 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 +Y+ T + + +R D+ +++D NLE+++ + + SLL ++ Sbjct: 234 GVIFAYLDDTHHFDLKHLTRLQRIDLSQYVWMDPFTIRNLELVQP-AHPKGVSLLDILNQ 292 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGRL + + L D I RL + + ++ L + I+ LK DV R ++ Sbjct: 293 TTTAMGGRLLNHWMVTILKDRKLIENRLAFVEYLLKKDALRDEIRNQLKQLSDVERFAAK 352 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLK--NDLPEELRGAVEKLKKLPQSLEKTLSSM 438 + + PK + + D ++ I + ++ N + + +L ++ + K Sbjct: 353 ISTAKISPKQLMQLADSLKIIAEIQSTCIQHINTILAHFFSSDTELAQIADFIYK----Q 408 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 LS+D P G +R G + LD R ++ K + ++ + E+T I ++KI NN Sbjct: 409 LSEDPPHLITRGNVIRKGVSSELDRLREIQYSGKDFLDKMRDREIEKTGIPSIKIAFNNV 468 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IEV ++ + D +I +QT+ N R+ T EL E +I A L IE Sbjct: 469 FGYYIEVRNTHKDKVPSD------WIRKQTLVNAERYITEELKTYEQQILGAEERILAIE 522 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F+ L +I + ++ +Q IA +D+ A +A Y +P +++ + +++GR Sbjct: 523 TQLFQDLIEKLIAKINTIQQNAQQIAFLDVVSTFAEIAFRFQYQKPSLNDGFDLDIRNGR 582 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP++E+ L + ++ ND + +K ++ ++TGPNM GKS LRQ ALIVI+AQ Sbjct: 583 HPVIEQFLDPGTE--YVPNDVLI----NKTDQQILMITGPNMSGKSALLRQTALIVILAQ 636 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +G YVPA A IGIVD++F+RVG++DN++SG STFMVEM ETASILN + +S ++LDEI Sbjct: 637 LGCYVPADSASIGIVDRIFTRVGASDNISSGESTFMVEMNETASILNNISERSLILLDEI 696 Query: 739 GRGTATLDGLSIAWATIEYLH-ETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 GRGT+T DG+SIAWA E+LH R + L ATH+HEL +++ +++R N + V + Sbjct: 697 GRGTSTYDGISIAWAIAEFLHNHPTRPKTLFATHYHELNEMAATMERIKNFNISVKELKN 756 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 ++F+ K++ G ++HS+GI V ++AG+P +V+ R+ +ILK EK H + M ++ Sbjct: 757 KVLFVRKLVAGGSEHSFGIHVARMAGMPQSVVIRSEEILKVLEK--SHQSESMNDRTKQL 814 Query: 858 QTKESKNNLSKNDKLFVEKIK--CLNLD--EMSPLTALKTLYAVK 898 + + + + D +E I+ +N D ++P+ AL L +K Sbjct: 815 SDQNMQLSFFQLDDPILEAIRDDLINTDINTLTPVEALMKLNEIK 859 >gi|154686121|ref|YP_001421282.1| DNA mismatch repair protein MutS [Bacillus amyloliquefaciens FZB42] gi|189030693|sp|A7Z4X5|MUTS_BACA2 RecName: Full=DNA mismatch repair protein mutS gi|154351972|gb|ABS74051.1| MutS [Bacillus amyloliquefaciens FZB42] Length = 862 Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust. Identities = 290/896 (32%), Positives = 500/896 (55%), Gaps = 58/896 (6%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + S TPM++QY++IK+ + D+ +F+R+GDFYE+FF+DA AS+ L ITLT R I Sbjct: 2 MASYTPMIQQYLKIKAEHQDAFLFFRLGDFYEMFFEDAKKASQELEITLTSRDGGSADKI 61 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A YI++LIK G+++AICEQ E P + K +V+R VV+L+TPGT+ + Sbjct: 62 PMCGVPYHSAAAYIEQLIKKGYKVAICEQTEDP-----KAAKGVVKREVVQLITPGTVMD 116 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGI-FKISTSNHDRLISDIMRIDPREIIFS 200 + + +++N++ +V+ R + +A D++TG + + ++S+I + +EI+ S Sbjct: 117 GKGIHESENNFIASVSEFRDGYGLALSDLTTGENLAVFIERIEDVMSEIYSVSAKEIVVS 176 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 K H + L E G + D I+E RI ++ + +F ++ Sbjct: 177 SKFNEHTAAQ-LKERCGATISIE-----DGEITE-RIEIAKHLPGEELTETFMRL----- 224 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 +Y++KTQ + + + +++ + ID ++ NLE+ T+ S S++ SLL +D Sbjct: 225 ---YTYLQKTQKRSLDHLQPVQVYELEEAMKIDLYSKRNLELTETIRSKSKKGSLLWLLD 281 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T GGRL + I PL +++I R + + I + +++ LK D+ R Sbjct: 282 ETKTAMGGRLLKQWIDRPLIRASQIEERQEMVETLINHLFEREDLRERLKEVYDLERLAG 341 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 R+ G +D+ +++ ++ +I L L + +E G ++ L L Sbjct: 342 RVAFGNVNARDLIQLKESLKQVPSIKELVGSLNHKKAKERAGLIDPCG----DLLDLLEE 397 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 L ++ P ++G ++DG LDE R K IA L+ + T I++LK+ N Sbjct: 398 ALHENPPLSLKEGNLIKDGYHQKLDEYRDASKNGKDWIARLEQQERAYTGIRSLKVGFNK 457 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IEVT ++ +L+ R+ +QT++N R+ T EL + E I A N+ + Sbjct: 458 VFGYYIEVTKANLHLLEDG-----RYERKQTLTNAERYITPELKEKEALILEAENNICEL 512 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII-DNSTNFIVKD 616 E E F +L + + L ++ ++ +D A +++ ++Y +P+ DN I + Sbjct: 513 EYELFAVLREKVKQFIPRLQRLAKQMSELDALQCFATISENRHYTKPVFSDNEVKVI--E 570 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VEK + S+ ++ N+C + +S ++ L+TGPNM GKST++RQ AL+ IM Sbjct: 571 GRHPVVEKVM---DSQEYVPNNCLMG-----DSREMLLITGPNMSGKSTYMRQIALLSIM 622 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+G +VPA A + I D++F+R+G+AD+L SG+STFMVEM+E + + AT S ++ D Sbjct: 623 AQIGCFVPAKEAVLPIFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIVNATKDSLILFD 682 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DG+++A A IEY+H+ + L +TH+HELT L L + N ++ + N Sbjct: 683 EIGRGTSTYDGMALAQAIIEYVHDHIGAKTLFSTHYHELTVLEDKLPQLKNVHVRAEEYN 742 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK------LYHHNQKDM 850 ++FLH++ G AD SYGI V +LA LP+ +ISRA +ILK E+ L ++K Sbjct: 743 GTVVFLHQIKEGAADKSYGIHVAQLAELPDDLISRAQEILKQLEQTGDKPELPAVSEKKS 802 Query: 851 RL--------YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + ++ + + ++ +S +K +E K +N+ +M+PL A+ +Y ++ Sbjct: 803 AVREEPAQLSFFADGEKEQKAPAVSNKEKQVLEAFKSINILDMTPLEAMNEMYKLQ 858 >gi|311030164|ref|ZP_07708254.1| DNA mismatch repair protein MutS [Bacillus sp. m3-13] Length = 857 Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust. Identities = 283/835 (33%), Positives = 455/835 (54%), Gaps = 62/835 (7%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + S TPM++QY+ +K+ D+ +F+R+GDFYE+FF+DA AS+ L ITLT R + I Sbjct: 1 MASYTPMIQQYLRVKADYQDAFLFFRLGDFYEMFFEDATKASQVLEITLTSRDGGGKERI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A +YI +LI+ G ++AICEQ+E P + K +V+R VV+L+TPGT+ E Sbjct: 61 PMCGVPYHSAPNYIDQLIEKGFKVAICEQVEDP-----KQTKGVVKREVVQLITPGTVME 115 Query: 142 DQLLSPTDSNYLMAVARIRTE-WAIAWIDISTGIFKISTSNH--DRLISDIMRIDPREII 198 + LS +N+L ++ E + +A+ D+STG + N +L++++ I +EI+ Sbjct: 116 TKGLSDKQNNFLTSITHFEDETFGLAYADLSTGELHTTVINGPVQQLVNEVYSIGAKEIV 175 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 SEK PN+ I E + D F Q+ K Sbjct: 176 VSEK-------------------FPPNLV--QIIKERMVTTCSYEEVTDIPMEFDQIVKN 214 Query: 259 --------AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGS 309 + + Y+KKTQ + + ++ ++ ID ++ NLE+ T+ S Sbjct: 215 LEQEKLQMSVGRLLHYLKKTQKRSLDHLQPARFFELDQSMKIDLFSKRNLELTETIRSKG 274 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 ++ SLL +D ++T GGRL + + PL + I R D + I I+++LK Sbjct: 275 KKGSLLWLLDQTVTAMGGRLLKQWVDRPLINPALIEQRHDMVETLINEFFTRQEIRELLK 334 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 D+ R R+ G +D+ +R + S I L ++ LP E ++ + + + Sbjct: 335 EVYDLERLAGRVAFGNVNARDLVQLRKSL-SQIPHLKAMVEK-LPIENASILDNMDECEE 392 Query: 430 SLEKTLSSMLSDDL---PTFK-RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE 485 L+++L D L P+ ++G ++DG LD+ R R K IA L+ + + Sbjct: 393 -----LTTLLHDSLIEQPSLSVKEGNMMKDGFHEELDKYRDARRNGKTWIAELEKRERDL 447 Query: 486 TKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 T I++LKI +N GY+IE+T ++ S L + R+ +QT++N R+ T EL + E Sbjct: 448 TGIRSLKIGYNRIFGYYIEITKANISSL-----PEGRYERKQTLANAERYITEELKEKET 502 Query: 546 RITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPI 605 I A + +E E F L + L ++ ++ ID+ A +++++ Y RP Sbjct: 503 LILEAEEKIVALEYELFLKLREEVKVYIPRLQKLAKAVSEIDVLQCFATISEDRYYTRPS 562 Query: 606 IDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKST 665 + + DGRHP+VEK + + ++ ND + N+ + L+TGPNM GKST Sbjct: 563 FNEERKVYITDGRHPVVEKVM---DANEYVPNDTWMDKENE-----MLLITGPNMSGKST 614 Query: 666 FLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILN 725 ++RQ AL I+AQ+G +VPA A + I D++F+R+G+AD+L SG+STFMVEM+E + + Sbjct: 615 YMRQVALTAILAQIGCFVPAKEASLPIFDQIFTRIGAADDLISGQSTFMVEMLEARNAIV 674 Query: 726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRF 785 AT S ++ DEIGRGT+T DG+++A A IEY+H+ + L +TH+HELT L + LK+ Sbjct: 675 YATQNSLILFDEIGRGTSTYDGMALAQALIEYIHDKIGAKTLFSTHYHELTSLDEELKKL 734 Query: 786 HNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 N + V + N ++FLHK+ G AD SYGI V +LA LP +I RA IL+ E Sbjct: 735 KNIHVSVVEQNGKVVFLHKMKEGPADKSYGIHVAELAELPKELIIRAQTILEKLE 789 >gi|328475004|gb|EGF45796.1| DNA mismatch repair protein MutS [Listeria monocytogenes 220] Length = 828 Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust. Identities = 293/865 (33%), Positives = 478/865 (55%), Gaps = 59/865 (6%) Query: 54 LFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIES 113 +FF+DAL AS+ L ITLT R + IPMCGVP H+A+ YI LI+ G+++AICEQ+E Sbjct: 1 MFFEDALNASQILEITLTGREGGTKEKIPMCGVPYHSASGYIDTLIEKGYKVAICEQVED 60 Query: 114 PLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIR-TEWAIAWIDIST 172 P + K +V+R VV+L++PGT+ +++ L ++NY+ ++ E+ A+ D+ST Sbjct: 61 P-----KTTKGMVKREVVQLISPGTVMDERGLKAKENNYIASLYCYEGKEYGFAYSDLST 115 Query: 173 GIFK--ISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDH 230 G K + ++ DRLI+++ + RE+I S E E L +V Q + F Sbjct: 116 GELKSTVIEASEDRLINELTTLSTRELIVSSSEK---------EVLSDVMKEQLGLTF-- 164 Query: 231 SISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTL 290 S+ E N V S S EK A + Y+K+TQ + + + + + Sbjct: 165 SVHEEDTIPVENEKLVTRHMSLS--EKRAIGKLLHYLKETQKRDLGHLQQAVHYETSNYM 222 Query: 291 FIDSAARSNLEILRTLSG-SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLD 349 +D ++ NLE+ ++ G R+ +LL +D + T GGR+ + I PL D KI R + Sbjct: 223 KMDYYSKRNLELAESIRGKGRQGTLLWLLDNTQTAMGGRMLKQWIDRPLIDRKKIIDRQN 282 Query: 350 SI-----NFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRS--GI 402 + +FF + ++ N LK+ D+ R R+ G +D+ +R+ + I Sbjct: 283 DVSELMAHFFERLELVEN-----LKNVYDLERLAGRVAYGNVNARDLIQLRNSLYQIPRI 337 Query: 403 NILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLD 462 L + ++ EL ++ ++L + LE+ + D P R+GG ++DG ++ LD Sbjct: 338 RATLLSMSSESLTELANQLDPCEELTEKLEEAIM----DSAPISIREGGIIKDGYNSQLD 393 Query: 463 ETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDR 522 R K IA L+ K E T IK +K+ N GY+IEVT ++ +L + R Sbjct: 394 TYRDASRNGKTWIAELERKERELTGIKTMKVGFNRVFGYYIEVTRANTHLL-----PEGR 448 Query: 523 FIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQV 582 + +QT++N R+ T EL + E I +A ++ +E + F + + + E L ++ Sbjct: 449 YERKQTLTNAERYITPELKEKEKLILDAEEKSMELEYQLFSEVREMVKDYIERLQKLAKS 508 Query: 583 IAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLS 642 ++ ID + A ++++ ++ RP + + VK GRHP+VEK + QS ++ANDCDL Sbjct: 509 VSEIDCLQSFADISEKNHFIRPTLSEDGSLHVKQGRHPVVEKVMGAQS---YVANDCDL- 564 Query: 643 CPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGS 702 D+N ++ L+TGPNM GKST++RQ AL I AQ+G +VPA A + I D++F+R+G+ Sbjct: 565 ---DENR-EILLITGPNMSGKSTYMRQVALTAICAQVGCFVPAEEAILPIFDQIFTRIGA 620 Query: 703 ADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETN 762 AD+L +G+STFMVEM+E + + AT S ++ DEIGRGTAT DG+++A A IEY+HE Sbjct: 621 ADDLIAGQSTFMVEMLEARNAIVHATKDSLILFDEIGRGTATYDGMALAQAIIEYIHENV 680 Query: 763 RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLA 822 + L +TH+HELTDL K L N + + N ++FLHK+ G AD SYGI V +LA Sbjct: 681 HAKTLFSTHYHELTDLEKELSGLQNIHVSAVEENGKVVFLHKIKEGPADKSYGIHVAELA 740 Query: 823 GLPNTVISRAYDILKTFE----KLYHHNQKDMRLYYPEIQTK----ESKNNLSKNDKLFV 874 LP ++I RA IL+ E K+ + K + E+Q E + +S + + Sbjct: 741 ELPKSLIERASRILEQLENDDKKIIIASVKQPEEVHEEVQLSMFPVEPEKKVSSKETKLL 800 Query: 875 EKIKCLNLDEMSPLTALKTLYAVKA 899 ++I +N+ +M+P+ A+ LY +++ Sbjct: 801 KEIASMNIMQMTPMDAMNKLYELQS 825 >gi|291484259|dbj|BAI85334.1| DNA mismatch repair protein [Bacillus subtilis subsp. natto BEST195] Length = 858 Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust. Identities = 285/892 (31%), Positives = 497/892 (55%), Gaps = 61/892 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY++IK+ + D+ +F+R+GDFYE+FF+DA AS+ L ITLT R + IPMCG Sbjct: 5 TPMIQQYLKIKAEHQDAFLFFRLGDFYEMFFEDAKKASQELEITLTSRDGGAAEKIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A+ YI++LIK G+++AICEQ E P + K +V+R VV+L+TPGT+ + + + Sbjct: 65 VPYHSASAYIEQLIKKGYKVAICEQTEDP-----KAAKGVVKREVVQLITPGTVMDGKGI 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGI-FKISTSNHDRLISDIMRIDPREIIFSEKEL 204 +++N++ +V+ + +A D++TG + + +IS+I + REI+ S L Sbjct: 120 HESENNFIASVSACSNRYGLALSDLTTGENLAVLIERLEDVISEIYSVGAREIVVSGG-L 178 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 L E G + + ++ + ++ D +F ++ Sbjct: 179 DADTVAQLRERCG------ATISIEDGETDEHVTIIEHLNNEDITKTFLRL--------Y 224 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSIT 323 +Y+K+TQ + + + +++ + ID ++ NLE+ T+ S +++ SLL +D + T Sbjct: 225 TYLKRTQKRSLDHLQPVQVYELEEAMKIDLYSKRNLELTETIRSKNKKGSLLWLLDETKT 284 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 GGRL + I PL +I R + + + + +++ LK D+ R R+ Sbjct: 285 AMGGRLLKQWIDRPLIRVNQIEERQEMVETLMSHFFEREDLRERLKEVYDLERLAGRVAF 344 Query: 384 GRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLPQS--LEKTLSSML 439 G +D+ +++ ++ GI L L +D A E+ K++ + + L L Sbjct: 345 GNVNARDLIQLKESLKQVPGIKQLVASLAHD------KAKERAKRIDPCGDVLELLEEAL 398 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 ++ P ++G ++DG + LDE R K IA L+ + E T I++LK+ N Sbjct: 399 YENPPLSVKEGNLIKDGYNQKLDEYRDASRNGKDWIARLEQQEREYTGIRSLKVGFNKVF 458 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IEVT ++ +L++ R+ +QT++N R+ T EL + E I A N+ +E Sbjct: 459 GYYIEVTKANLHLLEEG-----RYERKQTLTNAERYITPELKEKEALILEAENNICELEY 513 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F L + + L ++ ++ +D A +++ ++Y +P ++ +GRH Sbjct: 514 ELFTELREKVKQYIPRLQQLAKQMSELDALQCFATISENRHYTKPEFSKDEVEVI-EGRH 572 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VEK + S+ ++ N+C + ++ ++ L+TGPNM GKST++RQ ALI IMAQ+ Sbjct: 573 PVVEKVM---DSQEYVPNNCMMG-----DNRQMLLITGPNMSGKSTYMRQIALISIMAQI 624 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 G +VPA A + I D++F+R+G+AD+L SG+STFMVEM+E + + AT S ++ DEIG Sbjct: 625 GCFVPAKKAVLPIFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIVNATKNSLILFDEIG 684 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGT+T DG+++A A IEY+H+ + L +TH+HELT L L + N ++ + N + Sbjct: 685 RGTSTYDGMALAQAIIEYVHDHIGAKTLFSTHYHELTVLEDKLPQLKNVHVRAEEYNGTV 744 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 +FLH++ G AD SYGI V +LA LP +I+RA DILK E + N+ ++ + P+++ Sbjct: 745 VFLHQIKEGAADKSYGIHVAQLAELPGDLIARAQDILKELE--HSGNKPEVPVQKPQVKE 802 Query: 860 KESK-------------NNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + ++ LSK +K ++ K LN+ +M+PL A+ +Y ++ Sbjct: 803 EPAQLSFFDEAEKPAETPKLSKKEKQVIDAFKSLNILDMTPLEAMNEMYKLQ 854 >gi|187479070|ref|YP_787095.1| DNA mismatch repair protein MutS [Bordetella avium 197N] gi|123514196|sp|Q2KWZ4|MUTS_BORA1 RecName: Full=DNA mismatch repair protein mutS gi|115423657|emb|CAJ50202.1| DNA mismatch repair protein [Bordetella avium 197N] Length = 875 Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust. Identities = 301/904 (33%), Positives = 468/904 (51%), Gaps = 66/904 (7%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S TPMM+QY+ +K+ L+FYRMGDFYE+F++DA A+R L +TLTKRG G IPM Sbjct: 8 SHTPMMQQYLRLKAEAGPLLLFYRMGDFYEMFYEDAEKAARLLNVTLTKRGTSNGAPIPM 67 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVPVH Y+ +L+ +G +AICEQI P AK V R +VR+VTPGTLT+D Sbjct: 68 AGVPVHAMEQYLARLVALGESVAICEQIGDPAAAK-----GPVERRIVRIVTPGTLTDDA 122 Query: 144 LLSPTDSNYLMAV---ARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 LL L AV + IAW+++++G F ++ +L S++ RI P E++++ Sbjct: 123 LLPAKADRALAAVCLSGKRDPRAGIAWLNLASGEFHVTECAPAQLDSELHRIGPAELVYA 182 Query: 201 ---EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS---- 253 E +++++ +S P+ F+ + S + ++ D+ F Sbjct: 183 DSTELDITYSGARSRV----------PDWHFEADGARSHLLTHFQ---TDSLAGFDIEDM 229 Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 V AA A + Y +TQ + E + +D R NLE+ +TLSG + Sbjct: 230 PVAVCAAGALLRYAARTQSQALAHVQTISAERAGMYVLMDPVTRRNLELTQTLSGEEAPT 289 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPI----------LINP 363 L +D T G RL + PL ++ + R +I + + L+ Sbjct: 290 LFSLLDDCRTPMGSRLLRRWLHHPLRENAPVAARQQAIATLLSARLDMAQTFGAAGLLET 349 Query: 364 IQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEK 423 ++ L PD+ R +RL + P+++A +RD + + + L L + Sbjct: 350 LRSALGLFPDIERIAARLALRSVRPRELASLRDALATLPQLQTLVAPLSASPRLAELATQ 409 Query: 424 LKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 L P ++ LS ++ + RDGG + G DA LDE R L S + L+ + Sbjct: 410 LTLDP-AIADLLSRAIAQEPALAIRDGGVIASGFDADLDELRLLAADSGEFLVQLEARER 468 Query: 484 EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDL 543 E T I NL+++ N G++IEV+ + +D + RQT+ N R+ T EL Sbjct: 469 ERTGISNLRVEFNRVHGFYIEVSKGQTDKVPED------YRRRQTLKNAERYITPELKSW 522 Query: 544 ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCR 603 E+++ +A + AL E FE + +A+ L +A+ +A +D +LA A+ + Sbjct: 523 EDKVLSAQDRALAREKWLFEQVLDALSAYVRPLSDAAAALAELDALGSLAEHARRHEWVA 582 Query: 604 PIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 P + S + GRHP+VE +++ F N C L + ++ L+TGPNMGGK Sbjct: 583 PDLLESAEIDIDAGRHPVVEHAIER-----FTPNHCRLDA-----TRRMLLITGPNMGGK 632 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 ST++RQ ALI ++A+ GS+VPA A +G +D++F+R+G+AD+LA GRSTFM+EM E A+I Sbjct: 633 STYMRQVALIALLARTGSFVPARRARVGKIDRIFTRIGAADDLAGGRSTFMMEMTEAAAI 692 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLK 783 L +T+ S V++DEIGRGT+T DGL++AWA + L NR L ATH+ ELT L Sbjct: 693 LAASTSNSLVLMDEIGRGTSTYDGLALAWAIAQRLITHNRALTLFATHYFELTRLPSEQA 752 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY 843 N L ++S GI+FLH+V G A SYGIQV + AG+P VI A + E+L Sbjct: 753 TAANVHLAAAESAGGIVFLHEVREGPASRSYGIQVAQRAGIPAAVIRHAT---RELERLE 809 Query: 844 HHNQKDMRLYY------PEIQTKESKNNLSKN--DKLFVEKIKCLNLDEMSPLTALKTLY 895 +L E QT+ ++ ++N E + ++ D ++P AL+ LY Sbjct: 810 AQGAPTPQLGLFAAALDAEAQTQAQADHDAENAALLALHEALSGIDPDSLTPREALEALY 869 Query: 896 AVKA 899 +KA Sbjct: 870 RLKA 873 >gi|311086160|gb|ADP66242.1| DNA mismatch repair protein MutS [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] Length = 793 Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust. Identities = 284/824 (34%), Positives = 474/824 (57%), Gaps = 54/824 (6%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + + TPM++QY+ +KS PD L+FY+MGDFYELF++DA S L ITLTK+G K I Sbjct: 1 MNNHTPMIKQYLSLKSQYPDMLLFYQMGDFYELFYEDAERISELLKITLTKKGYSNHKII 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PM GVP H + +Y+ KL+K+G IAIC+Q + + KK+ L+ R VVR++TPGT+T+ Sbjct: 61 PMAGVPCHKSEYYLSKLVKLGESIAICDQ-QKETDCKKK----LISRKVVRIITPGTVTD 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST--SNHDRLISDIMRIDPREIIF 199 + LL + N++ A+ + ++ + +D+S G F +S S+ D L+S+I R +P+EI++ Sbjct: 116 EVLLEENEDNFIAAIWKENNQFGYSVLDLSLGFFGVSKIFSSCD-LLSEIERTNPKEILY 174 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQVEKT 258 E + +F + + ++ FD S + +N ++D FG +EK Sbjct: 175 PEN------FSDVFLIESRKCIRKRSLLEFDLETSYKLLNLQFNTCSLDGFG----IEKN 224 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y+K M P I + ++ ++F++ + R +LEI + +SG ++ + Sbjct: 225 NFVIRAAGCLLQYVKSMNMTVLPNIRQLKYNYMEDSIFMNFSTRKSLEITQNISGEKKNT 284 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTR---LDSINFFIQNPILINPIQKILKS 370 L ++ ++T G R+ + SPL + + R ++++ FF + +Q IL+ Sbjct: 285 LSAILNKTVTSMGSRMLNRWLNSPLKNFKIVRNRHESVEALQFFYKE------LQFILRQ 338 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDG--IRSGINILNLFLKNDLPEELRGAVEKLKKLP 428 D+ R SRL + P D +R I ++++ +K+ +++R ++ +++ Sbjct: 339 VNDLERIYSRLALRTASPHDFVRMRSTLEILPNLHLILKKIKSKHIKKIRLSIGYFEEVL 398 Query: 429 QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 L+K +S S + RDGG + + + LDE RS++ SK I + + K ++ I Sbjct: 399 CLLKKAISLKPSKCI----RDGGVIAELYNIELDELRSIKINSKEYIKNFEQKEKKKLMI 454 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 ++ KIK N +GY+I+++ ++ K ++ QT+ N R++ L + E ++ Sbjct: 455 ESFKIKFNKIIGYYIQISKRHTHLIPK------YYVIIQTLKNTERYSVPLLKEYEEKVL 508 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 N+ +LL+E + + + N I E L N++ ++ +D+ + L+ A NY RPI+ Sbjct: 509 NSEMRSLLLEKKLYAEIFNIIEPFLEKLQNSALALSELDVLVNLSERAISLNYTRPIMSE 568 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 + + RHP+VE LK PFI N LS + ++ ++TGPNMGGKST++R Sbjct: 569 KYGISLLESRHPVVECFLKT----PFIKNSVFLS-----RTQRMIIITGPNMGGKSTYMR 619 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q ALIVIMA +GS+VPA YA IG +DK+F+R+GSAD+L++G STFM+EM+E ++IL+ AT Sbjct: 620 QIALIVIMAGIGSFVPARYALIGSIDKIFTRIGSADDLSNGYSTFMMEMMEISNILHNAT 679 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA 788 + S V++DE+GRGT+T +GLS+AW+ YL N+ LL+THF ELT L + K N Sbjct: 680 SNSLVLIDELGRGTSTNEGLSLAWSCSRYLININKSMTLLSTHFVELTKLEEKEKFVKNF 739 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 S+ I FL+K+ GI+ SYGI V L+GLP++V+ A Sbjct: 740 HFSAIKSDLHIAFLYKIKNGISKKSYGISVASLSGLPDSVLEDA 783 >gi|221309579|ref|ZP_03591426.1| DNA mismatch repair protein [Bacillus subtilis subsp. subtilis str. 168] gi|221313903|ref|ZP_03595708.1| DNA mismatch repair protein [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318826|ref|ZP_03600120.1| DNA mismatch repair protein [Bacillus subtilis subsp. subtilis str. JH642] gi|221323098|ref|ZP_03604392.1| DNA mismatch repair protein [Bacillus subtilis subsp. subtilis str. SMY] gi|255767391|ref|NP_389586.2| DNA mismatch repair protein MutS [Bacillus subtilis subsp. subtilis str. 168] gi|321315470|ref|YP_004207757.1| DNA mismatch repair protein MutS [Bacillus subtilis BSn5] gi|239938876|sp|P49849|MUTS_BACSU RecName: Full=DNA mismatch repair protein mutS gi|225185018|emb|CAB13577.2| DNA mismatch repair recognition factor [Bacillus subtilis subsp. subtilis str. 168] gi|320021744|gb|ADV96730.1| DNA mismatch repair protein MutS [Bacillus subtilis BSn5] Length = 858 Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust. Identities = 285/892 (31%), Positives = 497/892 (55%), Gaps = 61/892 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY++IK+ + D+ +F+R+GDFYE+FF+DA AS+ L ITLT R + IPMCG Sbjct: 5 TPMIQQYLKIKAEHQDAFLFFRLGDFYEMFFEDAKKASQELEITLTSRDGGAAEKIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A+ YI++LIK G+++AICEQ E P + K +V+R VV+L+TPGT+ + + + Sbjct: 65 VPYHSASAYIEQLIKKGYKVAICEQTEDP-----KAAKGVVKREVVQLITPGTVMDGKGI 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGI-FKISTSNHDRLISDIMRIDPREIIFSEKEL 204 +++N++ +V+ + +A D++TG + + +IS+I + REI+ S L Sbjct: 120 HESENNFIASVSACSNGYGLALSDLTTGENLAVLIERLEDVISEIYSVGAREIVVS-GSL 178 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 L E G + + ++ + ++ D +F ++ Sbjct: 179 DADTVAQLRERCG------ATISIEDGETDEHVTIIEHLNNEDITKTFLRL--------Y 224 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSIT 323 +Y+K+TQ + + + +++ + ID ++ NLE+ T+ S +++ SLL +D + T Sbjct: 225 TYLKRTQKRSLDHLQPVQVYELEEAMKIDLYSKRNLELTETIRSKNKKGSLLWLLDETKT 284 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 GGRL + I PL +I R + + + + +++ LK D+ R R+ Sbjct: 285 AMGGRLLKQWIDRPLIRVNQIEERQEMVETLMSHFFEREDLRERLKEVYDLERLAGRVAF 344 Query: 384 GRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLPQS--LEKTLSSML 439 G +D+ +++ ++ GI L L +D A E+ K++ + + L L Sbjct: 345 GNVNARDLIQLKESLKQVPGIKQLVASLAHD------KAKERAKRIDPCGDVLELLEEAL 398 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 ++ P ++G ++DG + LDE R K IA L+ + E T I++LK+ N Sbjct: 399 YENPPLSVKEGNLIKDGYNQKLDEYRDASRNGKDWIARLEQQEREYTGIRSLKVGFNKVF 458 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IEVT ++ +L++ R+ +QT++N R+ T EL + E I A N+ +E Sbjct: 459 GYYIEVTKANLHLLEEG-----RYERKQTLTNAERYITPELKEKEALILEAENNICELEY 513 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F L + + L ++ ++ +D A +++ ++Y +P ++ +GRH Sbjct: 514 ELFTELREKVKQYIPRLQQLAKQMSELDALQCFATISENRHYTKPEFSKDEVEVI-EGRH 572 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VEK + S+ ++ N+C + ++ ++ L+TGPNM GKST++RQ ALI IMAQ+ Sbjct: 573 PVVEKVM---DSQEYVPNNCMMG-----DNRQMLLITGPNMSGKSTYMRQIALISIMAQI 624 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 G +VPA A + I D++F+R+G+AD+L SG+STFMVEM+E + + AT S ++ DEIG Sbjct: 625 GCFVPAKKAVLPIFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIVNATKNSLILFDEIG 684 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGT+T DG+++A A IEY+H+ + L +TH+HELT L L + N ++ + N + Sbjct: 685 RGTSTYDGMALAQAIIEYVHDHIGAKTLFSTHYHELTVLEDKLPQLKNVHVRAEEYNGTV 744 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 +FLH++ G AD SYGI V +LA LP +I+RA DILK E + N+ ++ + P+++ Sbjct: 745 VFLHQIKEGAADKSYGIHVAQLAELPGDLIARAQDILKELE--HSGNKPEVPVQKPQVKE 802 Query: 860 KESK-------------NNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + ++ LSK +K ++ K LN+ +M+PL A+ +Y ++ Sbjct: 803 EPAQLSFFDEAEKPAETPKLSKKEKQVIDAFKSLNILDMTPLEAMNEMYKLQ 854 >gi|221635855|ref|YP_002523731.1| DNA mismatch repair protein MutS [Thermomicrobium roseum DSM 5159] gi|221157957|gb|ACM07075.1| DNA mismatch repair protein MutS [Thermomicrobium roseum DSM 5159] Length = 881 Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust. Identities = 289/816 (35%), Positives = 440/816 (53%), Gaps = 40/816 (4%) Query: 27 PMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGV 86 P RQY+ +K+ P +++ YR+GDFYE F +DA + +R ITLT R +PM G+ Sbjct: 25 PSRRQYLRLKAHYPHAILLYRLGDFYEAFDEDARIVARDARITLTSRSFGRNGRVPMAGI 84 Query: 87 PVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLS 146 P H NHY+ +L+ GH IAI EQ+ P K LV R V R++TPGT+ E LL Sbjct: 85 PHHALNHYLARLLAAGHTIAIAEQVSEP-------GKGLVERAVTRVLTPGTVAEAALLP 137 Query: 147 PTDSNYLMAVARIRTEWAIAWIDISTG---IFKISTSNHDRLISD-IMRIDPREIIFSEK 202 T++ YL AVAR+ +AW+D+STG + ++S + D L+++ R+ P E + + Sbjct: 138 TTENRYLAAVARLPERTGLAWVDVSTGEFAVLELSGAERDLLLAEEYARLAPAETLVPDT 197 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS-FSQVEKTAAA 261 + + G + F+ + R+ + ++ FG AA Sbjct: 198 D-------EIPLPPGGCLTRLEHWHFEPERAAQRLRALFATRSLAPFGCQHLPAALAAAG 250 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 A + Y+++T + E + +D+A R NLE+ R+L +G SLL +D Sbjct: 251 AIVVYLERTNPALLSLLTSLRTEVPARRVGLDAATRRNLELTRSLGTGGTRGSLLGVLDR 310 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 ++T G R ++ PL D ++ R + P L + + IL ++ D+ R S+ Sbjct: 311 TVTPMGARTLRRLVSEPLRDLDELRRRQHIVGALRATPELRSRLGSILLAAGDLERLTSK 370 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + G +D A +R + + + + P R A + P+ L L L Sbjct: 371 IVQGSATIRDFATLRQALATAEALRGALQASGEPALQRFA-DDFISCPE-LAALLERALI 428 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 +D DG LR G LD + ++++R +A+L+ + E T I++LK+ +N G Sbjct: 429 ED-----SDGPRLRPGFCPELDAVLAAVEETRRFLATLEQRERERTGIRSLKVGYNKVFG 483 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IEVT S + D ++ +QT++ RF T EL D E R+ A +E Sbjct: 484 YYIEVTRPHLSRVPPD------YVRKQTVATGERFITPELKDAEARLLAAEAEIAELERA 537 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 + L+ + ++ L + IA +D +LA +A + ++ P +D S +++ GRHP Sbjct: 538 ALARLTREVTTRTNELLRLAGWIAWLDAFRSLAEVAAQYDWSCPELDESDTILIEGGRHP 597 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE L Q PF+ NDC L + +L L+TGPNMGGKST+LRQ ALIV++AQ+G Sbjct: 598 VVEVLLDGQ---PFVPNDCQLG----GDGPRLLLVTGPNMGGKSTYLRQVALIVLLAQIG 650 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA+ A IG+VD++F RVG+ D+L G+STFMVEM+ETA+IL QAT +S VILDE+GR Sbjct: 651 SFVPAARARIGLVDRIFCRVGAHDDLPGGQSTFMVEMVETATILRQATQRSLVILDEVGR 710 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DGL+IAWA +E LH+ R L ATHF ELT L L N + + + ++ Sbjct: 711 GTATQDGLAIAWAVLEDLHDRVGARTLFATHFLELTALEAELPGVANVHVAAMEQDGRVV 770 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 FL++V PG AD +YGI V +LAGLP V RA +L Sbjct: 771 FLYRVRPGAADRAYGIHVARLAGLPPWVADRAERLL 806 >gi|331701278|ref|YP_004398237.1| DNA mismatch repair protein mutS [Lactobacillus buchneri NRRL B-30929] gi|329128621|gb|AEB73174.1| DNA mismatch repair protein mutS [Lactobacillus buchneri NRRL B-30929] Length = 862 Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust. Identities = 285/829 (34%), Positives = 457/829 (55%), Gaps = 50/829 (6%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TPMM QY +IK PD+ +FYR+GDFYE+F +DA+ S+ L +TLT R ++ +P Sbjct: 4 KELTPMMVQYQKIKDQYPDAFLFYRLGDFYEMFNEDAIKGSQLLELTLTNRSRNAANPVP 63 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP +YI L+ G+++AICEQ+E P R K +V+R V++LVTPGT + Sbjct: 64 MCGVPHKAVQNYIDILVDQGYKVAICEQMEDP-----RLAKGMVKREVIQLVTPGTQVDV 118 Query: 143 QLLSPTDSNYLMAVA--RIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIF 199 + +NYL AV + E+A ++ D+STG K++ + +++++ + +EI+ Sbjct: 119 GSENAKSNNYLTAVVDDQKNHEFAFSYADLSTGELKVAKLTTQAEFVNELVSLQTKEIVV 178 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 + +L + + + LG + Q + + S+S Y VD + K Sbjct: 179 -DTDLPES-IQDTIQKLGILISHQSVLPVNASVS-------YLSQDVD-----DDLMKRV 224 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSLL 315 + YI+ TQ K ++ + +R I L +D ++ NLE++R + +G + +LL Sbjct: 225 VKLLLDYIQATQ---KRSLQHLKRAVIYEPSDFLELDHNSQYNLELIRNIRTGKKAGTLL 281 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T GGR + I PL + IN R D++ + + N +Q L D+ Sbjct: 282 WLLDQTKTAMGGRKLKQWIERPLVNRKLINQRHDAVAVLLDHYFERNQLQDELIKVYDLE 341 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R R+ G +D+ ++ ++ + + L+ + ++ L L +++ + Sbjct: 342 RLAGRISFGSVNGRDLIQLKASLKQ-VPKIKYILEQIADKSFEDMLKNLVPLDDVVDE-I 399 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 S + ++ P DGG ++DG + LD R + ++ +A L+ K + T I NLK+ Sbjct: 400 DSAIVEEPPISVTDGGVIKDGYNQQLDTYRDATNNGQKWLAELEAKERKITGINNLKVGF 459 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N+ GY+IEVT + + + +R+ +QT++N RF+T EL + E I A + Sbjct: 460 NHVFGYYIEVTKVNLNKI-----PANRYQRKQTLANAERFSTPELKEKEALILEAQEQSK 514 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E + F + + I + + + + + +A ID+ + A +++E + RP + VK Sbjct: 515 TLEYKLFVKIRDDIKKSIKRIQDLADAVASIDVLQSFAAVSEEYRFVRPTLTTQHVVEVK 574 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGK---LWLLTGPNMGGKSTFLRQNAL 672 DGRHP+VEK L Q PND N G+ + L+TGPNM GKST++RQ AL Sbjct: 575 DGRHPVVEKVLGHQQY-----------VPNDVNLGEDTSILLITGPNMSGKSTYMRQMAL 623 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 VIM QMG +VPA +A + + DK+F+R+G+AD+L SG+STFMVEM E + AT S Sbjct: 624 CVIMNQMGCFVPAKHAKLPVFDKIFTRIGAADDLISGQSTFMVEMKEANDAIENATPNSL 683 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 ++ DEIGRGTAT DG+++A A IEY+H + L +TH+HELT L +SLKR N + Sbjct: 684 ILFDEIGRGTATYDGMALAQAIIEYVHNNIGAKTLFSTHYHELTVLDESLKRLQNVHVGA 743 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 ++SN ++FLHK+ PG AD SYGI V KLAGLP ++ RA DIL E+ Sbjct: 744 TESNGELVFLHKIQPGPADKSYGIHVAKLAGLPEGLLHRANDILTNLEQ 792 >gi|33600645|ref|NP_888205.1| DNA mismatch repair protein [Bordetella bronchiseptica RB50] gi|33568245|emb|CAE32157.1| mismatch repair protein [Bordetella bronchiseptica RB50] Length = 865 Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust. Identities = 290/897 (32%), Positives = 462/897 (51%), Gaps = 62/897 (6%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY+ +K+ L+FYRMGDFYE+F++DA A+R L +TLTKRG G IPM G+P Sbjct: 1 MMQQYLRLKAEAGPLLLFYRMGDFYEMFYEDAERAARLLNLTLTKRGNSNGTPIPMAGIP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 VH Y+ +L+ +G +AICEQI P AK V R +VR+VTPGTLT++ LL Sbjct: 61 VHAMEQYLARLVALGESVAICEQIGDPAAAK-----GPVERRIVRIVTPGTLTDEALLPA 115 Query: 148 TDSNYLMAV---ARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 L AV + +AW+++++G F ++ +L S++ RI P E+I +E Sbjct: 116 KADRALAAVCVTGKREPRAGLAWLNLASGAFHVTECAPGQLESELHRIAPAELIQAES-- 173 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK-----TA 259 AE FE P+ F+ + +++ ++ D+ G F VE A Sbjct: 174 --AELHMAFE---GARTRVPDWHFEADGARAQLLAHFK---TDSLGGFD-VEDMPAAVCA 224 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A A + Y +TQ + E + +D R NLE+ +TLSG +L +D Sbjct: 225 AGALLRYAARTQSQALAHVQTIAAERPGQYVLLDPVTRRNLELTQTLSGEESPTLFSLLD 284 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFI----------QNPILINPIQKILK 369 T G RL + PL ++ + R +I + L+ ++ L Sbjct: 285 GCRTPMGSRLLRRWLHHPLRENEPVLARQHAIATMLTARQEGEQAFAAAALLETLRDALN 344 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 + PD+ R +R+ + P+++A +RD + + + R +L +P Sbjct: 345 AFPDIERIAARVALRSVRPRELASLRDALVALPALHASLAPLSGSPRARELAAQLA-MPP 403 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 + + L+ ++ + RDGG + G D+ LDE R+L + L+ + E T I Sbjct: 404 DIGELLARAVASEPAVAIRDGGVIAAGFDSELDELRALATDGGDFLVQLEARERERTGIG 463 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 NL+++ N G++IEV+ + +D + RQT+ N R+ T EL E+R+ + Sbjct: 464 NLRVEFNRVHGFYIEVSKGQTDKVPED------YRRRQTLKNAERYITPELKTWEDRVLS 517 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 A + +L E +E L +A+ + L + +A +D ALA A+ ++ P + + Sbjct: 518 AQDRSLAREKWLYEQLLDALAQYVRPLSQCASALAELDTLAALAEHARRHDWVAPELIDG 577 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 ++ GRHP+VE+ +++ F N C L + ++ L+TGPNMGGKST++RQ Sbjct: 578 AEIDIEAGRHPVVERAIER-----FTPNGCRLD-----QTRRMLLITGPNMGGKSTYMRQ 627 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI ++A+ GS+VPA+ A +G +D++F+R+G+AD+LA GRSTFM+EM E A+IL +T Sbjct: 628 VALIALLARTGSFVPATRARVGRLDRIFTRIGAADDLAGGRSTFMMEMTEAAAILAASTP 687 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 S V++DEIGRGT+T DGL++AWA L NR L ATH+ ELT L N Sbjct: 688 ASLVLMDEIGRGTSTYDGLALAWAIAYRLLTHNRALTLFATHYFELTRLPAEQPTAANVH 747 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 L ++S GI+FLH+V G A SYGIQV + AG+P VI +A + E+L Sbjct: 748 LAAAESAGGIVFLHEVREGPASRSYGIQVAQRAGVPAAVIRQAS---RELERLEAQGAPT 804 Query: 850 MRLYY------PEIQTKESKNNLSKNDKL--FVEKIKCLNLDEMSPLTALKTLYAVK 898 +L ++Q++ L +++ ++ D ++P AL LY +K Sbjct: 805 PQLGLFAAALDADVQSQAMTEQAEDAAALAQLRDQLAAIDPDSLTPREALDALYRLK 861 >gi|315225135|ref|ZP_07866952.1| DNA mismatch repair protein MutS [Capnocytophaga ochracea F0287] gi|314944818|gb|EFS96850.1| DNA mismatch repair protein MutS [Capnocytophaga ochracea F0287] Length = 860 Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust. Identities = 295/889 (33%), Positives = 475/889 (53%), Gaps = 53/889 (5%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + TP+M+QY +IKS PD+L+ +R+GDFYE F +DA+ A+ L I LT R + Sbjct: 1 MAKETPLMKQYNQIKSKYPDALLLFRVGDFYETFGEDAVKAAHTLDIVLTNRNNGTERS- 59 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 + G P H+ N Y+ KL+K G+R+AIC+Q+E P + K +V+R V LVTPG Sbjct: 60 ELAGFPYHSINTYLPKLVKAGYRVAICDQLEDP-----KLVKGIVKRGVTELVTPGVALN 114 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 D +L +N+L +V + +A++D+STG F ++ + + + P E++ ++ Sbjct: 115 DDILQSKSNNFLASVWLGKQGCGVAFLDVSTGEFLVAQGDKTYIDKLLQNFRPSELLVAK 174 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 + E+ F + + VF D ++ + ++ ++ FG E A Sbjct: 175 HQ--KKEFAEHFGDDFHCFYLEDWVFKD-DYAQQVLTKHFQTNSLKGFGVDELTEAILTA 231 Query: 262 AAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 AI Y+ +TQ I +R ++ +++D NLE L + + SLL ID Sbjct: 232 GAILYYLSETQHHQLQHITAIQRIAEEAYVWLDKFTIRNLE-LYAGNTTPSVSLLDVIDK 290 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 +++ G R +A PL KI R + +++F+++ ++ ++ L D+ R +S+ Sbjct: 291 TLSPMGSRTLKRWLALPLKKLDKIRQRHEVVDYFLKHIDVLEQVKIALSRMGDIERLISK 350 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + + P+++ +R + I ++ E L +KL Q L ++ L+ Sbjct: 351 VATLKINPREVVQLRASLEH-IPLIKQLCLASANESLTLLGDKLHSCEQ-LSARIAETLN 408 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 +D P G + G A LDE R L K + L L+ ++ T I +LKI +NN G Sbjct: 409 EDAPVNIAKGNAIAKGFSAELDELRGLSHSGKSYLDDLLLRESQRTGIPSLKIDNNNVFG 468 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IEV ++ + D +I +QT+ N R+ T EL + E +I A L+E Sbjct: 469 YYIEVRNTHKDKVPHD------WIRKQTLVNAERYITGELKEYEAKILGAEEKIALLEQS 522 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 + L I E + + +I +D A LA E NY RP ++ +KDGRHP Sbjct: 523 LYAELIAFISEYIGQVQTNATLIGQLDCLCGFATLAMENNYHRPEMNEGYAIDIKDGRHP 582 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 ++EK L P+IAND L D+ ++ ++TGPNM GKS LRQ ALIV++AQ+G Sbjct: 583 VIEKQLP--VGTPYIANDVYL----DRERQQIIMITGPNMSGKSAILRQTALIVLLAQIG 636 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA+ A +GIVDK+F+RVG++DN++ G STFMVEM E A ILN +++S V+LDEIGR Sbjct: 637 SFVPAATAQLGIVDKIFTRVGASDNISMGESTFMVEMNEAALILNNISDRSLVLLDEIGR 696 Query: 741 GTATLDGLSIAWATIEYLHE-TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 GT+T DG+SIAWA EYLHE ++ + L ATH+HEL ++S+ + N + V ++ + + Sbjct: 697 GTSTYDGISIAWAIAEYLHEHPSKAKTLFATHYHELNEMSEQFEHIKNYNVSVKETKDSV 756 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN-----------QK 848 +FL K+ G + HS+GI V K+AG+P VI +A +LK E+ HN QK Sbjct: 757 LFLRKLTEGGSAHSFGIHVAKMAGMPQYVIQKANKMLKKLEE--SHNVVPTAEVVKNAQK 814 Query: 849 DMRLYYPEIQTKESKNNLSKNDKL---FVEKIKCLNLDEMSPLTALKTL 894 +M+L + ++ ND L E + L+++ ++P+ AL L Sbjct: 815 EMQLSFFDM-----------NDPLLEALKEDLLSLDINTLTPVEALMKL 852 >gi|27904861|ref|NP_777987.1| DNA mismatch repair protein MutS [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|44888202|sp|Q89AD3|MUTS_BUCBP RecName: Full=DNA mismatch repair protein mutS gi|27904259|gb|AAO27092.1| DNA mismatch repair protein MutS [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 800 Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust. Identities = 284/819 (34%), Positives = 450/819 (54%), Gaps = 38/819 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+ +K P+ +FYR+GDFYELFFDDA S L ITLTKRG K+IPM G Sbjct: 13 TPMIKQYLSLKLHYPNMFLFYRLGDFYELFFDDAKRISLMLDITLTKRGYSSQKEIPMAG 72 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P + N Y+ KL+KIG ICEQ + + K+ G L+ R + R+VTPGT+ +++ L Sbjct: 73 IPYTSLNRYLSKLLKIGESAVICEQ--THIIDKRTG---LIERKISRVVTPGTVIDEEFL 127 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSN-HDRLISDIMRIDPREIIFSEKEL 204 S T +N L +V + + A +D+ +G F IS + + IS++ R DP E++ E L Sbjct: 128 SETKNNLLGSVYYSKKRFGYATLDLCSGNFYISEYDTFESFISELQRTDPEELLIQEDFL 187 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSF-SQVEKTAAAAA 263 Y + FE + + + N F S + ++ ++ + +FG + + + +AA Sbjct: 188 ----YMNFFEKRKGIRLCKLNDFNIDS-AYQQLKCHFKTKNLKSFGVYQNNLAISAAGCL 242 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 + Y+K Q P + + + +F++SA R NLEI+ +SG +E +LL +D + T Sbjct: 243 LKYLKFIQYSLLPHVKSIKVRYDCNHIFMNSATRKNLEIINNISGKKEHTLLSILDNTAT 302 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 GGRL + +++P+ D IN R + I + + +LK D+ R +SR+ Sbjct: 303 PMGGRLLRKWLSAPIKDIKIINKRHNIIKSL---KTVYMSLSLLLKGIGDLERIISRIAC 359 Query: 384 GRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 PKD +R + I+ + K+ E + +++ + L ++L S Sbjct: 360 RSASPKDFVSMRSALLQFSKIIFVLNSTKSKTLELISCKIKEYNSILILLRRSLKVCPSK 419 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + ++G + + + LD+ R + + + + ++ + I +LK+ +N LGY Sbjct: 420 TI----KEGNVISENYNKDLDKWRKIANNASEYLQYFEVSERKRLHITSLKVNNNRVLGY 475 Query: 502 FIEVTSSSASVLKKDLE-SKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 +++++ KKD++ + + + QT+ + R++TLEL+D EN + NA + L IE Sbjct: 476 YVQIS-------KKDIKLAPNNYKKIQTLKHCVRYSTLELLDYENNVNNAKDKVLEIENY 528 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 + L + II +SL + I+ +D+ L A NY P+I + ++ D RHP Sbjct: 529 LYNELFDFIIPYIDSLKISVNTISELDVLNNLTERACVLNYVCPVISDEYGILLTDSRHP 588 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE LK PF+ N +LS S + ++TGPNMGGKST++RQ ALIVIMA +G Sbjct: 589 VVENLLKT----PFVKNSINLS-----KSSNMLIITGPNMGGKSTYMRQIALIVIMAYIG 639 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA YA IG+ DK+F+R+GSADNLA G STFM+EMIE +SIL +T+ S V++DE+GR Sbjct: 640 SFVPAKYARIGLCDKIFTRIGSADNLAYGESTFMMEMIEMSSILRNSTSNSLVLIDELGR 699 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GT+ DGLS+AWA IEYL L +TH+ ELT L N V + N I+ Sbjct: 700 GTSMHDGLSLAWACIEYLAGKINAMTLFSTHYFELTKLKNYYSNIRNMYFDVLEHNNEIV 759 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF 839 F + + G + SYG+ V LA LP ++ A LK F Sbjct: 760 FTYVIKNGFINKSYGLVVAALAKLPKCILLSAKKKLKEF 798 >gi|324989669|gb|EGC21613.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK353] Length = 849 Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust. Identities = 281/820 (34%), Positives = 445/820 (54%), Gaps = 46/820 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYPDAFLLFRMGDFYELFYDDAVNAAQILEISLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI L++ G+++AI EQ+E P EAK +V+R VV+++TPGT+ + Sbjct: 67 VPYHSAQQYIDVLVESGYKVAIAEQMEDPKEAK-----GVVKREVVQVITPGTVVDS--- 118 Query: 146 SPTDS--NYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEK 202 S DS N+L+A+ + +A++D+ TG F++++ L+ +I + RE++ Sbjct: 119 SKPDSANNFLVALDYSDGLYGLAYMDLVTGEFQVTSLEDFALVCGEIRNLKAREVVLG-- 176 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS-FSQVEKTAAA 261 +L E V Q N+ S ++ + D V G S +E+ AA Sbjct: 177 -------YALPEAEEQVLAGQMNLLL--SYVQTALDD------VQLLGEELSPMERQAAG 221 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 + Y+ +TQM + + +I+ L +D A +++L++ SG + SL +D Sbjct: 222 KLLEYVHRTQMRELSHLKKAQHYEIKDFLQMDYATKASLDLTENARSGKKHGSLYWLMDE 281 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGR+ I PL D +I+ R + + F+ + + + + LK D+ R SR Sbjct: 282 TKTAMGGRMLRSWIQRPLIDEARISQRQNVVEVFLDHFFERSDLTESLKGVYDIERLASR 341 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + G+ PKD+ + + + + L+ L +E L +P+ L +SS + Sbjct: 342 VSFGKTNPKDLLQLAATL-GNVPQIKAILQGIGSPHLARLIEGLDPIPE-LASLISSAIL 399 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D P +G +R D +LD+ R + + IA L++K + I NLKI +N G Sbjct: 400 PDAPHIITEGNIIRTDFDETLDQYRLVLREGTGWIAELEVKERANSGISNLKIDYNKKDG 459 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+ VT+S + F + T+ N RF T EL +E + A + +E E Sbjct: 460 YYFHVTNSQLA------HVPSHFFRKATLKNSERFGTEELARIEGEMLEAREKSANLEYE 513 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F + + + L +Q +A +D+ + A +A++Q+ RP+ ++ GRH Sbjct: 514 IFMRIREEAGKYIQRLQALAQTLAAVDVLQSFAAVAEQQHLVRPVFTAERRLQIEKGRHA 573 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + QS +I N L D + L+TGPNM GKST++RQ A+IVIMAQMG Sbjct: 574 VVEKVMGAQS---YIPNSILLDQETD-----IQLITGPNMSGKSTYMRQLAIIVIMAQMG 625 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 SYVPA A + + D +F+R+G+AD+L SG+STFMVEM+E + QA+ +S ++ DE+GR Sbjct: 626 SYVPAQSASLPLFDAIFTRIGAADDLVSGQSTFMVEMMEANRAIRQASERSLILFDELGR 685 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A IE++H + L ATH+HELT L SL+ N + + + + Sbjct: 686 GTATYDGMALAQAIIEHIHHYTGAKTLFATHYHELTALEDSLEHLENVHVATLEKDGQVT 745 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 FLHK+ PG AD SYGI V K+AGLP ++ RA IL E Sbjct: 746 FLHKIEPGPADKSYGIHVAKIAGLPEKLLERADSILSHLE 785 >gi|320529998|ref|ZP_08031074.1| DNA mismatch repair protein MutS [Selenomonas artemidis F0399] gi|320137795|gb|EFW29701.1| DNA mismatch repair protein MutS [Selenomonas artemidis F0399] Length = 861 Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust. Identities = 305/892 (34%), Positives = 475/892 (53%), Gaps = 62/892 (6%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY+ K +P L+F+R+GDFYE+FFDDA +A++ LG+TLT R L K+ PMCGVP Sbjct: 1 MMQQYLSAKKAHPGELLFFRLGDFYEMFFDDAKIAAKELGLTLTSRSGDLDKN-PMCGVP 59 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A+ YI +L+ G ++AI EQI P K L R VV++VTPGT + L Sbjct: 60 YHAADSYIARLVAKGFKVAIAEQIGDP------KAKGLTPREVVKVVTPGTALLGEELKD 113 Query: 148 TDSNYLMAVARIRTE-WAIAWIDISTGIFKISTSNHDRLISDIM----RIDPREIIFSEK 202 + Y++ + +A+A DISTG + D + I R ++F+E Sbjct: 114 AANVYIVLIHETAPGCYALAGADISTGECFYAAYTGDAAVQQIQDELYRRTAAGLLFTEP 173 Query: 203 ELSHAEYKSLF--ETLGNVA--VAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 LS A+ F + L + A V P+ + IA ++ + +T Sbjct: 174 -LSVADDVRAFAVQRLPHCAITVVAPDA------DDELIARHFPPEEIPADAG----ART 222 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKT 317 A AA + Y+ T M + I D + + +D+ NLEI R+L G ++ +L Sbjct: 223 AIAALLRYLHATVMADLSQINCLSFLDASAGMQLDTYTLRNLEITRSLRDGGKKHTLFDV 282 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D++ T G RL + PL +I+ RLD++ + L ++ +L+S D R Sbjct: 283 LDFTRTPMGTRLLKSWLEHPLLVPHRIDARLDAVAELVSASSLRGKLRDLLRSIYDFERL 342 Query: 378 LSRLKIGRGEPKDIAVIR------DGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSL 431 L+R++ +D+ +R G+R+ ++ L L A E ++ L Sbjct: 343 LTRIETQSANARDLVALRVSLAALPGVRAALSGAKSRL-------LMRAAEGIETF-DDL 394 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + L + + D+ RDGG +R G LDE SK ++ ++ + E T IK L Sbjct: 395 RELLMAAIVDEPGLSVRDGGIIRMGYSDELDELHRFSHDSKSLLQEMEERERERTGIKTL 454 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 KI +N GY+IEV S + + D +I +QT++N RF T EL + E +I A Sbjct: 455 KIGYNKVFGYYIEVRHSGSDRVPAD------YIRKQTLANAERFITEELKEFETKILGAQ 508 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + +E F L + + E+ + N +++IA +D+ ++A A Y RP+I +++ Sbjct: 509 EKIVALEYSLFAELRDRVKERLVPIQNVARMIARVDVLQSMAEAAASYRYVRPVIRPASD 568 Query: 612 --FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 I+KDGRHP+VE+ L++ F+ ND LS + L+TGPNM GKST++RQ Sbjct: 569 GEIIIKDGRHPLVERLLERDL---FVPNDTHLS----HGGTETMLITGPNMAGKSTYMRQ 621 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 AL+ +MAQ+GS+VPA A I VD++F+R+G++D+L SG+STFMVEM E A IL +AT Sbjct: 622 VALLTLMAQVGSFVPARSAQIAPVDRIFTRIGASDDLVSGQSTFMVEMNEVAQILREATR 681 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 S VILDEIGRGT+T DG+SIA A +E++ + L ATH+HELT+++ +R N Sbjct: 682 DSLVILDEIGRGTSTFDGMSIARAVVEHIDTRIHAKTLFATHYHELTEMAG--ERIRNYC 739 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 + V + ++FL +++ G AD SYGI V +LAGLP V+ RA +IL T E+ + Sbjct: 740 IAVREKGRSVVFLRRIVAGAADKSYGIHVARLAGLPPKVMERAEEILNTLEQCAVTQRAA 799 Query: 850 MRLYYPEIQ---TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + PE E S +E+++ L++ M+PL A+ TLY ++ Sbjct: 800 AAVGQPETDLPIAAEEPGMASLFAGGTLEELRGLDVMTMTPLEAMNTLYRLQ 851 >gi|213962943|ref|ZP_03391202.1| DNA mismatch repair protein MutS [Capnocytophaga sputigena Capno] gi|213954284|gb|EEB65607.1| DNA mismatch repair protein MutS [Capnocytophaga sputigena Capno] Length = 908 Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust. Identities = 296/889 (33%), Positives = 474/889 (53%), Gaps = 53/889 (5%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + TP+M+QY +IKS PD+L+ +R+GDFYE F +DA+ A+ L I LT R + Sbjct: 49 MAKETPLMKQYNQIKSKYPDALLLFRVGDFYETFGEDAVKAAHTLDIVLTNRNNGTERS- 107 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 + G P H+ N Y+ KL+K G+R+AIC+Q+E P + K +V+R V LVTPG Sbjct: 108 ELAGFPYHSINTYLPKLVKAGYRVAICDQLEDP-----KLVKGIVKRGVTELVTPGVALN 162 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 D +L +N+L +V + A++D+STG F ++ + + + P E++ ++ Sbjct: 163 DDILQSKSNNFLASVWLGKQSCGAAFLDVSTGEFLVAQGDKTYIDKLLQNFRPSELLVAK 222 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 + E+ F + + VF D ++ + ++ ++ FG E A Sbjct: 223 HQ--KKEFAEHFGDDFHCFYLEDWVFKD-DYAQQVLTKHFQTNSLKGFGVDELTEAILTA 279 Query: 262 AAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 AI Y+ +TQ I +R ++ +++D NLE L + + SLL ID Sbjct: 280 GAILYYLSETQHHQLQHITAIQRIAEEAYVWLDKFTIRNLE-LYAGNTTPSVSLLDVIDK 338 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 +++ G R +A PL KI R + +++F+++ ++ ++ L D+ R +S+ Sbjct: 339 TLSPMGSRTLKRWLALPLKKLDKIRQRHEVVDYFLKHIDVLEQVKTALSRMGDIERLISK 398 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + + P+++ +R + I ++ E L +KL Q L ++ LS Sbjct: 399 VATLKINPREVVQLRASLEH-IPLIKQLCLASANESLSLLGDKLHSCEQ-LSARIAETLS 456 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 +D P G + G A+LDE R L K + L L+ ++ T I +LKI NN G Sbjct: 457 EDAPVNIAKGNAIAKGFSAALDELRGLSHSGKSYLDDLLLRESQRTGIPSLKIDSNNVFG 516 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IEV ++ + D +I +QT+ N R+ T EL + E +I A +E Sbjct: 517 YYIEVRNTHKDKVPPD------WIRKQTLVNAERYITGELKEYEAKILGAEEKIGQLEQS 570 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 + L I E + + +I +D A LA E NY RP ++ +KDGRHP Sbjct: 571 LYAELIAFISEYIGQVQTNATLIGQLDCLCGFATLAMENNYHRPEMNEGYAIDIKDGRHP 630 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 ++EK L P+IAND L D+ ++ ++TGPNM GKS LRQ ALIV++AQ+G Sbjct: 631 VIEKQLP--VGTPYIANDVYL----DRERQQIIMITGPNMSGKSAILRQTALIVLLAQIG 684 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA+ A +GIVDK+F+RVG++DN++ G STFMVEM E A ILN +++S V+LDEIGR Sbjct: 685 SFVPAASAQLGIVDKIFTRVGASDNISMGESTFMVEMNEAALILNNISDRSLVLLDEIGR 744 Query: 741 GTATLDGLSIAWATIEYLHE-TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 GT+T DG+SIAWA EYLHE ++ + L ATH+HEL ++S+ +R N + V ++ + + Sbjct: 745 GTSTYDGISIAWAIAEYLHEHPSKAKTLFATHYHELNEMSEQFERIKNYNVSVKETKDSV 804 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN-----------QK 848 +FL K+ G + HS+GI V K+AG+P VI +A +LK E+ HN QK Sbjct: 805 LFLRKLTEGGSAHSFGIHVAKMAGMPQYVIQKANKMLKKLEE--SHNVVPTAEVVKNAQK 862 Query: 849 DMRLYYPEIQTKESKNNLSKNDKL---FVEKIKCLNLDEMSPLTALKTL 894 +M+L + ++ ND L E + L+++ ++P+ AL L Sbjct: 863 EMQLSFFDM-----------NDPLLEALKEDLLSLDINTLTPVEALMKL 900 >gi|319645909|ref|ZP_08000139.1| DNA mismatch repair protein mutS [Bacillus sp. BT1B_CT2] gi|317391659|gb|EFV72456.1| DNA mismatch repair protein mutS [Bacillus sp. BT1B_CT2] Length = 863 Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust. Identities = 287/897 (31%), Positives = 485/897 (54%), Gaps = 64/897 (7%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M++QY++IK+ D+ +F+R+GDFYE+FF+DA AS+ L ITLT R + IPMCGVP Sbjct: 1 MIQQYLKIKAEYQDAFLFFRLGDFYEMFFEDAKKASQELEITLTSRDGGSSERIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H+ + YI++LIK G+++AICEQ+E P AK +V+R VV+L+TPGT+ + + + Sbjct: 61 YHSCSSYIEQLIKKGYKVAICEQVEDPKSAK-----GVVKREVVQLITPGTVMDGKGIHE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEKELSH 206 ++N++ +V++ + + +A+ D++TG ++ D ++S+I + REI+ S + L Sbjct: 116 NENNFIASVSKFQHTYGLAFSDLTTGENLVTAIERLDDVVSEIYSVGAREIVVS-RNLDE 174 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISE--SRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 + L E G F D E + + VDTF Sbjct: 175 KDVAMLKERCGATIS-----FEDEQADEVPGIVNGLGSKELVDTFMRL-----------Y 218 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSIT 323 Y+K+TQ + + + +++ + ID ++ NLE+ T+ S +++ SLL +D + T Sbjct: 219 VYLKRTQKRSLDHLQNVQAYELEEAMKIDLYSKRNLELTETIRSKNKKGSLLWLLDETKT 278 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 GGRL + I PL +I R + + I + +++ LK D+ R R+ Sbjct: 279 AMGGRLLKQWIDRPLIRKGQIEERQEIVETLIAHLFEREDLRERLKEVYDLERLAGRVAY 338 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 G +D+ +++ ++ I L D P+ + EK+ L L + ++ Sbjct: 339 GNVNARDLIQLKESLKQVPAIKQLVGSLDHPK-AKARAEKIDPCGDLL-NLLEDAIYENP 396 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P ++G ++DG A LDE R K IA L+ + E T I++LK+ N GY+I Sbjct: 397 PLSLKEGNLIKDGYHAKLDEYRDASKNGKDWIARLEQQEREYTGIRSLKVGFNKVFGYYI 456 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EVT ++ +L++ R+ +QT++N R+ T EL + E I A N+ +E E F Sbjct: 457 EVTKANIHLLEEG-----RYERKQTLTNAERYITPELKEKEALILEAENNICELEYELFS 511 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L + + E L +++++ +D+ A +++ ++Y +P + ++ DGRHP+VE Sbjct: 512 ELRSKVKEYIPRLQQLAKMMSELDVLQCFATISENRHYVKPEFSDDVVQVI-DGRHPVVE 570 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 K + QS ++ N C++ ++ L+TGPNM GKST++RQ ALI I+AQ+G +V Sbjct: 571 KVMDSQS---YVPNSCEMG-----KGRQMLLITGPNMSGKSTYMRQMALISILAQIGCFV 622 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA A + I D++F+R+G+AD+L SG+STFMVEM+E + + AT S ++ DEIGRGT+ Sbjct: 623 PAKKAVLPIFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIVHATKNSLILFDEIGRGTS 682 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DG+++A A IEY+HE + L +TH+HELT L + L N ++ + ++FLH Sbjct: 683 TYDGMALAQAIIEYVHEHIGAKTLFSTHYHELTSLEEKLDDLKNVHVRAEEYEGKVVFLH 742 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH------------------ 845 ++ G AD SYGI V +LA LP+ +ISRA ILK E Sbjct: 743 QIKEGAADKSYGIHVAQLAELPDGLISRAKTILKELESGAKEAAPSTAPNMVKEAAEEAA 802 Query: 846 ----NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +Q ++ + E + LSK ++ + + K ++L +M+P+ + LY ++ Sbjct: 803 ATVADQPAQLSFFETDKPIEKETKLSKKEQAVLAEFKAMDLLDMTPIQVMNELYRLQ 859 >gi|238927479|ref|ZP_04659239.1| DNA mismatch repair protein MutS [Selenomonas flueggei ATCC 43531] gi|238884761|gb|EEQ48399.1| DNA mismatch repair protein MutS [Selenomonas flueggei ATCC 43531] Length = 860 Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust. Identities = 297/889 (33%), Positives = 478/889 (53%), Gaps = 51/889 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 + ++ TPMM+QY+ K +P L+F+R+GDFYE+FFDDA +A++ LG+TLT R L K+ Sbjct: 2 DAQNVTPMMQQYLAAKEAHPGELLFFRLGDFYEMFFDDAKVAAKELGLTLTSRSGDLEKN 61 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 PMCGVP H A+ YI +L+ G ++AI EQI P K L R VV++VTPGT Sbjct: 62 -PMCGVPYHAADSYIARLVAKGFKVAIAEQIGDP------KAKGLTHREVVKVVTPGTAL 114 Query: 141 EDQLLSPTDSNYLMAVAR-IRTEWAIAWIDISTG--IFKISTSNH--DRLISDIMRIDPR 195 D+ L + Y++ + ++ +A DI+TG + + H +++ ++ R Sbjct: 115 SDEALRDASNIYIVLLHEPAPGQFVLAGADITTGEAFYAVYAGEHAAQQIMDELYRRMAA 174 Query: 196 EIIFSEK-ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 E++ +E L+ L L + V+ + D ++ A ++ + Sbjct: 175 ELLLTEGFSLADEVRAFLAHRLPHCVVSVVSREADAALP----AQHFPAEEIPC----DA 226 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQS 313 + A AA ++Y+ +T M + I D T+ +D+ NLEI R+L G ++ + Sbjct: 227 GARAALAALLTYLHETVMADLSQINRLAFLDAAETMQLDTYTLRNLEITRSLRDGGKKNT 286 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D++ T G RL + PL +I+ RLD++ ++ L + ++ L + D Sbjct: 287 LFDVLDFTRTPMGTRLLKAWLEHPLLTPHRIDARLDAVAELVEKSTLRDALRDALHTVYD 346 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 R L+R++ +D+ +R + + + + L + L A +++ +L Sbjct: 347 FERLLTRIETQTANARDLVALRISL-AALPAVRACLAAAVSRLLVRAAGEIETF-DALRD 404 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L+ L D+ R+GG +R G DA LDE R SK ++ ++ + T IK LKI Sbjct: 405 ELTHALVDEPGLSVREGGMIRAGYDADLDELRRFSHDSKSLLQEMEERERTRTGIKTLKI 464 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GY+IEV S +D + + +I +QT++N RF T EL + E +I A Sbjct: 465 GYNKVFGYYIEVRHSG-----RD-QVPEGYIRKQTLANTERFITEELKNFEAKILGAEEK 518 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 +E F L + EQ + ++ IA +D+ +LA A Y RP + Sbjct: 519 ITALEYHLFTELRERVREQLVPIQGVARAIARVDVLQSLAAAAASYRYVRPTVGADGGIR 578 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 ++DGRHP+VE+ L++ F+ ND +LS + L+TGPNM GKST++RQ AL+ Sbjct: 579 IRDGRHPLVERILQRDV---FVPNDTELS----HGGTETMLITGPNMAGKSTYMRQVALL 631 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MAQ+GS+VPA A I VD++F+R+G++D+L SG+STFMVEM E A IL +AT S V Sbjct: 632 TLMAQVGSFVPARTAEIAPVDRIFTRIGASDDLVSGQSTFMVEMNEVAQILREATRDSLV 691 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ILDEIGRGT+T DG+SIA A +E++ + L ATH+HELT++ +R N + V Sbjct: 692 ILDEIGRGTSTFDGMSIARAVVEHIDGRIHAKTLFATHYHELTEMEN--ERIRNYCIAVR 749 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 + + ++FL +++ G AD SYGI V +LAGLP V RA +IL E + Sbjct: 750 EKGKNVVFLRRIVAGAADKSYGIHVARLAGLPQRVTERAEEILHALEAAAPQSA------ 803 Query: 854 YPEIQTKESKNNLSKNDKLF----VEKIKCLNLDEMSPLTALKTLYAVK 898 P+ +T K + + LF +++++ L++ M+PL AL TLY ++ Sbjct: 804 -PQ-ETSVQKTSDAGMASLFAGGTLDELRALDVMTMTPLEALNTLYRLQ 850 >gi|259502855|ref|ZP_05745757.1| DNA mismatch repair protein HexA [Lactobacillus antri DSM 16041] gi|259169222|gb|EEW53717.1| DNA mismatch repair protein HexA [Lactobacillus antri DSM 16041] Length = 873 Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust. Identities = 279/820 (34%), Positives = 453/820 (55%), Gaps = 46/820 (5%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY ++K PD+ +FYR+GDFYELF +DA+ ++ L +TLT R IPMCGVP Sbjct: 1 MMEQYQKVKDQYPDAFLFYRLGDFYELFNEDAVKGAQLLELTLTTRNHSAKNPIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 Y+ LI G+++AICEQ+E P +AK +V+R V RL+TPGT + Sbjct: 61 HRAVESYVDVLIDKGYKVAICEQMEDPKKAK-----GMVKRAVTRLITPGTQMDLNGDQA 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSEKELSH 206 +NYL A++ + +A+ D+STG K S +N D ++++++ + +E++ E +L Sbjct: 116 RQNNYLAAISPASGHFDLAYTDLSTGELKTTSLANVDGVVNELINLQSKEVV-GEGDLPD 174 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISY 266 K+ ++ + Q + IS Y + G ++ +SY Sbjct: 175 -RLKAALDSRHILLSQQSEILNRSEIS-------YLTQDLTAAG-----QRHVVGLLVSY 221 Query: 267 IKKTQMVNKPTIGYPERE-DIQSTLF--IDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 + TQ K ++ + +R Q + F ID +++NLE++ L SG R+ +L +D + Sbjct: 222 LLTTQ---KRSLAHMQRAVAYQPSAFMKIDHYSKTNLELMTNLRSGKRQGTLSWLLDETK 278 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G RL + PL D I R D + + + + +Q+ L D+ R R+ Sbjct: 279 TAMGSRLLKRWLDRPLIDPAAIKERQDKVAELLDHYFERSNLQEELIKVYDLERLAGRVA 338 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKTLSSMLS 440 G +D+ ++ + I + D P +L ++ L + +++ + Sbjct: 339 YGSVNGRDLIQLKTSLEQVPKIKYVLETLDSPVFADLTSRLDPLADIADLIDQAIV---- 394 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 ++ P DGG ++DG + LD+ R + K+ IA LQ + + T I NLKI +N+ G Sbjct: 395 EEPPIAVTDGGVIKDGYNDQLDQYRDAMNNGKQWIADLQEQERQVTGINNLKIGYNHVFG 454 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 YFIEVT + D +DR+ +QT+ N RF+T EL + E I A ++ +E + Sbjct: 455 YFIEVTK-----VNLDKIPRDRYERKQTLVNAERFSTPELKEKEALILGAQEKSVALEYD 509 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F + + Q + L +Q ++ +D+ + A+++++ ++ RP++++ +KDGRHP Sbjct: 510 LFVKIREQVKGQIQRLQKLAQALSELDVLQSFAVVSEDYHFVRPVMNSGHQLQIKDGRHP 569 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + Q ++ ND + D + L+TGPNM GKST++RQ AL +MAQMG Sbjct: 570 VVEKFMGHQE---YVPNDVQMGDDTD-----ILLITGPNMSGKSTYMRQLALTAVMAQMG 621 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 +VPAS A + I D++F+R+G+AD+L SG STFMVEM+E + L+ AT++S ++ DEIGR Sbjct: 622 CFVPASRAELPIFDQIFTRIGAADDLISGESTFMVEMMEANNALSHATDRSLILFDEIGR 681 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A IEY+H+ R + L +TH+HELT L ++L R N + ++ N ++ Sbjct: 682 GTATYDGMALAQAIIEYVHQHVRAKTLFSTHYHELTSLEETLPRLKNVHVGATEKNGELV 741 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 FLHKV G AD SYGI V KLAG+P ++ RA IL+ E Sbjct: 742 FLHKVSAGPADKSYGIHVAKLAGMPAPLLKRADQILQKLE 781 >gi|315221533|ref|ZP_07863453.1| DNA mismatch repair protein MutS [Streptococcus anginosus F0211] gi|315189367|gb|EFU23062.1| DNA mismatch repair protein MutS [Streptococcus anginosus F0211] Length = 855 Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust. Identities = 297/881 (33%), Positives = 468/881 (53%), Gaps = 50/881 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA A++ L I LT R K+ IPM G Sbjct: 9 SPGMQQYLDIKKDYPDAFLLFRMGDFYELFYDDATNAAQILEIALTSRNKNSENPIPMAG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+ YI LI+ G+++AI EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 69 VPYHSVQQYIDVLIEAGYKVAIAEQMEDPKKAV-----GVVKREVVQVITPGTVV-DSSK 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204 + +N+L+A+ ++ + +A++D+ TG F+++T S+ + + +I + RE++ EL Sbjct: 123 PDSQNNFLVALDKLAGIYGLAYMDVGTGEFQVTTLSDFNMVCGEIRNLRAREVVIG-YEL 181 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS-FSQVEKTAAAAA 263 E + + ET N+ ++Q FD V G S +E A Sbjct: 182 PEME-RQVLETQMNLLLSQVETTFD---------------DVQLLGKDLSPLEHQVAGKL 225 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 + Y+ KTQ+ + +I+ L +D + ++L++ +G + SL +D + Sbjct: 226 LEYVHKTQLRELSHLKQVHHYEIKDFLQMDYSTMASLDLTENARTGKKHGSLYWLMDETK 285 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G RL I PL D +I R D + F+ + + + LK D+ R SR+ Sbjct: 286 TAMGTRLLRAWIQRPLIDKERIVKRQDVVQVFLDHFFERSDLSDSLKGVYDIERLASRVS 345 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 G+ PKD+ + + I + D P L + KL ++P+ L + S +S D Sbjct: 346 FGKTNPKDLLQLAATLSHVPQIKGILKGIDSPV-LEDLIAKLDEIPE-LAALIQSAISSD 403 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P +G ++ G D +LD+ R + IA ++ K E + I NLKI +N GY+ Sbjct: 404 APNVITEGNIIKTGFDETLDKYRVVMRDGTSWIADIEAKERETSGINNLKIDYNKKDGYY 463 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 VT+S F + T+ N RF T EL +E + A + +E E F Sbjct: 464 FHVTNSQLE------HVPSHFFRKATLKNSERFGTEELARIEGEMLEAREKSANLEYEIF 517 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 + + + L +Q +A +D+ + A +A++Q++ RP + + GRH +V Sbjct: 518 MRIREEAGKYIKRLQFLAQTLATVDVLQSFATVAEKQHFVRPEFIEQRSIQIDKGRHAVV 577 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 EK + Q+ +I N S D+N + L+TGPNM GKST++RQ A+IVIMAQMGSY Sbjct: 578 EKVMGAQT---YIPN----SISMDENVN-VQLITGPNMSGKSTYMRQLAIIVIMAQMGSY 629 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 V A A + I D +F+R+G+AD+L SG+STFMVEM+E ++QAT S ++ DE+GRGT Sbjct: 630 VSAESAQLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANHAISQATENSLILFDELGRGT 689 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFL 802 AT DG+++A A IEY+H + L ATH+HELT+LS SL + N + + + + FL Sbjct: 690 ATYDGMALAQAIIEYIHNRTGSKTLFATHYHELTELSTSLTQLENVHVATLEKDGQVTFL 749 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-DMRLYYPEIQTKE 861 HK+ G AD SYGI V K+AGLPN +++RA IL E N+K + + Sbjct: 750 HKIEVGPADKSYGIHVAKIAGLPNDLLTRADQILTRLES--QANEKSSLGISNTLPADAR 807 Query: 862 SKNNLSKNDKLFVEKIKCLNLDEMSPL-----TALKTLYAV 897 KN +++ LF E + LDE+ L T ++ + AV Sbjct: 808 EKNQVAEQMSLFPEITESPILDELRQLDIYNMTPMEVMLAV 848 >gi|33592656|ref|NP_880300.1| DNA mismatch repair protein [Bordetella pertussis Tohama I] gi|44888183|sp|Q7VY01|MUTS_BORPE RecName: Full=DNA mismatch repair protein mutS gi|33572302|emb|CAE41855.1| mismatch repair protein [Bordetella pertussis Tohama I] gi|332382073|gb|AEE66920.1| DNA mismatch repair protein MutS [Bordetella pertussis CS] Length = 883 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 294/905 (32%), Positives = 466/905 (51%), Gaps = 62/905 (6%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 + L TPMM+QY+ +K+ L+FYRMGDFYE+F++DA A+R L +TLTKRG G Sbjct: 11 DALAGHTPMMQQYLRLKAEAGPLLLFYRMGDFYEMFYEDAERAARLLNLTLTKRGNSNGT 70 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+PVH Y+ +L+ +G +AICEQI P AK V R +VR+VTPGTL Sbjct: 71 PIPMAGIPVHAMEQYLARLVALGESVAICEQIGDPAAAK-----GPVERRIVRIVTPGTL 125 Query: 140 TEDQLLSPTDSNYLMAV---ARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPRE 196 T++ LL L AV + +AW+++++G F ++ +L S++ RI P E Sbjct: 126 TDEALLPAKADRALAAVCVTGKREPRAGLAWLNLASGAFHVTECAPAQLESELHRIAPAE 185 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 +I +E AE FE P+ F+ + +++ ++ D+ G F VE Sbjct: 186 LIQAES----AELHMAFE---GARTRVPDWHFEADGARAQLLAHFK---TDSLGGFD-VE 234 Query: 257 K-----TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 AA A + Y +TQ + E + +D R NLE+ +TLSG Sbjct: 235 DMPAAVCAAGALLRYAARTQSQALAHVQTIAAERSGQYVLLDPVTRRNLELTQTLSGEES 294 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFI----------QNPILI 361 +L +D T G RL + PL ++ + R +I + L+ Sbjct: 295 PTLFSLLDGCRTPMGSRLLRRWLHHPLRENEPVLARQHAIATMLTARQEGEQTFAAAGLL 354 Query: 362 NPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAV 421 ++ L + PD+ R +R+ + P+++A +RD + + + R Sbjct: 355 ETLRDALNAFPDIERIAARVALRSVRPRELASLRDALAALPALHASLTPLSGSPRARELA 414 Query: 422 EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLK 481 +L +P + + L+ ++ + RDGG + G D+ LDE R+L + L+ + Sbjct: 415 AQLA-MPPDIGELLARAVASEPAVAIRDGGVIAAGFDSELDELRALATDGGDFLVQLEAR 473 Query: 482 YAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELI 541 E T I NL+++ N G++IEVT + +D + RQT+ N R+ T EL Sbjct: 474 ERERTGIGNLRVEFNRVHGFYIEVTKGQTDKVPED------YRRRQTLKNAERYITPELK 527 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 E+R+ +A + +L E +E L +A+ + L + +A +D ALA A+ ++ Sbjct: 528 TWEDRVLSAQDRSLAREKWLYEQLLDALAQYVRPLSQCASALAELDTLAALAEHARRHDW 587 Query: 602 CRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 P + + ++ GRHP+VE+ +++ F N C L + ++ L+TGPNMG Sbjct: 588 VAPELIDGAEIDIEAGRHPVVERAIER-----FTPNGCRLD-----QTRRMLLITGPNMG 637 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKST++RQ ALI ++A+ GS+VPA+ A +G +D++F+R+G+AD+LA GRSTFM+EM E A Sbjct: 638 GKSTYMRQVALIALLARTGSFVPATRARVGRLDRIFTRIGAADDLAGGRSTFMMEMTEAA 697 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS 781 +IL +T S V++DEIGRGT+T DGL++AWA L NR L ATH+ ELT L Sbjct: 698 AILAASTPASLVLMDEIGRGTSTYDGLALAWAIAYRLLTHNRALTLFATHYFELTRLPAE 757 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 N L ++S GI+FLH+V G A SYGIQV + AG+P VI +A + E+ Sbjct: 758 QPTAANVHLAAAESAGGIVFLHEVREGPASRSYGIQVAQRAGVPAAVIRQAS---RELER 814 Query: 842 LYHHNQKDMRLYY------PEIQTKESKNNLSKNDKL--FVEKIKCLNLDEMSPLTALKT 893 L +L ++Q++ L +++ ++ D ++P AL Sbjct: 815 LEAQGAPTPQLGLFAAALDADVQSQAMTEQAEDAAALAQLRDQLVAIDPDSLTPREALDA 874 Query: 894 LYAVK 898 LY +K Sbjct: 875 LYRLK 879 >gi|319940116|ref|ZP_08014470.1| DNA mismatch repair protein mutS [Streptococcus anginosus 1_2_62CV] gi|319810830|gb|EFW07157.1| DNA mismatch repair protein mutS [Streptococcus anginosus 1_2_62CV] Length = 853 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 292/867 (33%), Positives = 462/867 (53%), Gaps = 45/867 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYPDAFLLFRMGDFYELFYEDAINAAQILEIALTSRNKNSENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+ YI LI+ G+++AI EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPYHSVQQYIDVLIEAGYKVAIAEQMEDPKKAV-----GVVKREVVQVITPGTVV-DSSK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSEKEL 204 + +N+L+A+ ++ + +A++D+ TG F++ S S+ + + +I + RE++ EL Sbjct: 121 PDSQNNFLVALDKLSGIYGLAYMDVGTGEFQVTSLSDFNMVCGEIRNLRAREVVVG-YEL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS-FSQVEKTAAAAA 263 S E + + E N+ ++Q FD V G S +E+ A Sbjct: 180 SEME-RQVLEIQMNLLLSQVETTFD---------------DVQLLGKDLSPLERQVAGKL 223 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 + Y+ KTQ+ + +I+ L +D + ++L++ +G + SL +D + Sbjct: 224 LQYVHKTQLRELSHLKQVHHYEIKDFLQMDYSTMASLDLTENARTGKKHGSLYWLMDETK 283 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G RL I PL D +I R D + F+ + + + LK D+ R SR+ Sbjct: 284 TAMGTRLLRAWIQRPLIDKERIVKRQDVVQVFLDHFFERSDLSDTLKGVYDIERLASRVS 343 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 G+ PKD+ + + I + D P L + KL ++P+ L + +S D Sbjct: 344 FGKTNPKDLLQLAATLSHVPQIKGILKGIDSPV-LEDLIAKLDEIPE-LANLIQLAISPD 401 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P +G ++ G D +LD+ R + IA ++ K E + I NLKI +N GY+ Sbjct: 402 APNVITEGNIIKTGFDETLDKYRVVMRDGTSWIADIEAKEREASGINNLKIDYNKKDGYY 461 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 VT+S F + T+ N RF T EL +E + A + +E E F Sbjct: 462 FHVTNSQLE------HVPSHFFRKATLKNSERFGTEELARIEGEMLEAREKSANLEYEIF 515 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 + + + L + +Q +A +D+ + A +A++Q++ RP + + GRH +V Sbjct: 516 MRIREEAGKYIKRLQSLAQTLATVDVLQSFAAVAEKQHFVRPEFIEQRSIQIDKGRHAVV 575 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 EK + Q+ +I N S D+N + L+TGPNM GKST++RQ A+IVIMAQMGSY Sbjct: 576 EKVMGAQT---YIPN----SISMDENVN-VQLITGPNMSGKSTYMRQLAIIVIMAQMGSY 627 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 V A A + I D +F+R+G+AD+L SG+STFMVEM+E ++QAT S ++ DE+GRGT Sbjct: 628 VSAESAQLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANHAISQATENSLILFDELGRGT 687 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFL 802 AT DG+++A A IEY+H + L ATH+HELT+LS SL + N + + + + FL Sbjct: 688 ATYDGMALAQAIIEYIHNQTGAKTLFATHYHELTELSTSLTQLENVHVATLEKDGQVTFL 747 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-DMRLYYPEIQTKE 861 HK+ G AD SYGI V K+AGLPN +++RA IL E N+K + Sbjct: 748 HKIEVGPADKSYGIHVAKIAGLPNDLLTRADQILTRLES--QANEKSSFGISNTLPADAR 805 Query: 862 SKNNLSKNDKLFVEKIKCLNLDEMSPL 888 KN +++ LF E + LDE+ L Sbjct: 806 EKNQVAEQMSLFTETTESPILDELRQL 832 >gi|303248020|ref|ZP_07334286.1| DNA mismatch repair protein MutS [Desulfovibrio fructosovorans JJ] gi|302490577|gb|EFL50482.1| DNA mismatch repair protein MutS [Desulfovibrio fructosovorans JJ] Length = 879 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 290/895 (32%), Positives = 460/895 (51%), Gaps = 48/895 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM+ QY+ +K +P +L+FYRMGDFYE+FF+DA A+R L +TLT R +PMCG Sbjct: 2 TPMLEQYLRLKGEHPGALLFYRMGDFYEMFFEDAETAARELQLTLTSRNPEAENPVPMCG 61 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP Y+ +L++ G ++A+C+QIE P +A K LV+R V R++TPGT E+ L Sbjct: 62 VPHQAVEGYLAQLLEKGFKVAVCDQIEDPKQA-----KGLVKRAVTRVLTPGTAVEEGNL 116 Query: 146 SPTDSNYLMAVARIRTEWA--IAWIDISTGIFK-ISTSNHDRLISDIMRIDPREIIFSEK 202 + N+L A+ E A +AW+D STG + + + RL +I PRE++ + Sbjct: 117 RAKEHNFLAALYFDADERAGGLAWVDFSTGEWSGLFARDAARLWQWAAKIGPRELLLPDG 176 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTF--GSFSQVEKTAA 260 ++ + + +P+ FD + ++ + + G Q+ + A Sbjct: 177 LEPPRDFAREGMQISRFPL-RPH--FDLTSGRDKVLKAQGVADLAALDVGDKPQLVR-AM 232 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTID 319 A ++Y+ QM + + + ++ + ID NLEI R L G + Q +L +D Sbjct: 233 GALLTYLASNQMRDIGHLAPFKPVNLGRHMLIDEVTERNLEIFRRLDGRKGQGTLWHVLD 292 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 ++T GGRL + P D I D++ + + +++ L D+ R + Sbjct: 293 RTVTPMGGRLLESWLRQPWLDLAPILETQDAVAWLAGDEERRRALREALAGVYDLERLTT 352 Query: 380 RLKIGRGEPKDIAVIRDGIRS-GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 R+ + R P+D +R + + + P+ + L + E LS Sbjct: 353 RIFLNRAAPRDFTALRQSLAALPRLRALAAASAEPPKAATDLLSGWDDLDDACE-LLSRA 411 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 L D P +GG + G + LDE L + + I L + E K+ LK+ +N Sbjct: 412 LVDSPPVLVTEGGLFKPGYNPDLDELMELTEHGEERIRQLLAEEREGCKLPKLKLGYNRV 471 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+ E++ S+ + F RQT++N R+ T L +LE ++ A +E Sbjct: 472 FGYYFELSKSAGY-------PPEHFERRQTLANCERYVTPRLKELEEKLMAAGEKRKTLE 524 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 F L + I + + + + +A +D+ LA A ++ RP + + ++ GR Sbjct: 525 YNLFVALRDHIAALRDRIMDTAARVARLDVWQGLAEAAVANDWTRPELRPDLDIRIRAGR 584 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP++E Q +I ND L + ++ L+TGPNM GKST LRQ A+I ++AQ Sbjct: 585 HPVIEAV---QGVGNYIPNDVTLD-----EATRVLLITGPNMAGKSTVLRQTAIIALLAQ 636 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA+ A IG+VD++F RVG++DNLA G+STFMVEM+ETA IL QA +S VILDEI Sbjct: 637 IGSFVPATKAEIGLVDRVFCRVGASDNLAQGQSTFMVEMMETARILRQAGRRSLVILDEI 696 Query: 739 GRGTATLDGLSIAWATIEYL---HETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 GRGTAT DGL++AWA +E L + R L ATH+HELT L L R NA + V + Sbjct: 697 GRGTATFDGLALAWAVVEDLCGRDDGQGVRTLFATHYHELTALEGRLPRLRNANIAVKEW 756 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYH--HNQKDMR-- 851 I+FL +++PG AD SYG++V +LAG+P V+ RA +L+ E+ H + R Sbjct: 757 KGDIVFLRRLLPGPADRSYGVEVARLAGVPRNVVRRARQLLEELERSRDPAHAARGSRER 816 Query: 852 -------LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 L+ ++E + + ++++ L LD ++PL AL L KA Sbjct: 817 GQPILPGLFGVSAPSREEPQETAASP--LLDELSRLELDRITPLEALTLLTDWKA 869 >gi|228992457|ref|ZP_04152385.1| DNA mismatch repair protein mutS [Bacillus pseudomycoides DSM 12442] gi|228767278|gb|EEM15913.1| DNA mismatch repair protein mutS [Bacillus pseudomycoides DSM 12442] Length = 906 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 277/832 (33%), Positives = 469/832 (56%), Gaps = 63/832 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R IPMCG Sbjct: 21 TPMIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAIKAAHELEITLTSRDGGSSDRIPMCG 80 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 81 VPYHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTI 135 Query: 146 SPTDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEK 202 ++N+L A+ +A+A D++TG ++ T + ++ ++ +EI+ + Sbjct: 136 DEKENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGTVEDVLLEVYATGSKEIVV-DS 194 Query: 203 ELSHAEYKSLFETLGNV-----AVAQPNVFFDH---SISESRIADYYNITTVDTFGSFSQ 254 S E L ETL A P +H S++++++ Sbjct: 195 TFSKDELNKLTETLKMTISYEDATKIPE-GLEHLVKSVTQTKLV---------------- 237 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSR 310 TA ++Y+ +TQ K ++ + + DI T + ID ++ NLE+ TL + + Sbjct: 238 ---TAVGRLLNYVLRTQ---KRSLDHLQPVDIYYTNQFMKIDVHSKRNLELTETLRTKEK 291 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 SLL +D + T GGR+ + + PL I RL+ + F+ + L +++ LK Sbjct: 292 TGSLLWLLDKTKTAMGGRMLKQWMERPLIQKDNIEERLEMVETFVNDYFLREDLKEKLKE 351 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLP 428 D+ R ++ G +D+ +R + IL L N L + Sbjct: 352 VYDLERLAGKVAYGNVNARDLLQLRRSLLQVPAILEAISLLDNSYAARLIQGADPC---- 407 Query: 429 QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 +SL + L + ++ P +DG ++DG + LD+ R + K IA L+ + + T I Sbjct: 408 ESLTELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGI 467 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 K+LKI +N GY+IEVT ++ S L + R+ +QT++N RF T EL + E I Sbjct: 468 KSLKIGYNRIFGYYIEVTKANLSAL-----PEGRYERKQTLANAERFVTDELKEKETLIL 522 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 A + +E + F +L + L + ++VI+ +D+ + A +++E+ + +P++ + Sbjct: 523 EAEEKIVQLEYDLFTVLREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTD 582 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++R Sbjct: 583 KREIFIKDGRHPVVEKVL---NGKLYVPNDCMMPENMD-----VFLITGPNMSGKSTYMR 634 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q ALI +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ Sbjct: 635 QLALITVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANAS 694 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA 788 +S ++ DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L +SL++ N Sbjct: 695 ERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLEQLKNV 754 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 755 HVSAIEENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 806 >gi|300214789|gb|ADJ79205.1| DNA mismatch repair protein mutS [Lactobacillus salivarius CECT 5713] Length = 876 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 294/898 (32%), Positives = 479/898 (53%), Gaps = 67/898 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY++IK PD+ +FYR+GDFYE+F+DDA+ S+ L +TLT+R K IPMCG Sbjct: 8 TPMMEQYMQIKKQYPDAFLFYRLGDFYEMFYDDAIKGSQILELTLTQRNKKAVDPIPMCG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A +YI L+ G+++AICEQ+E P +AK +V+R V++LVTPGT+ ++ Sbjct: 68 VPHHAAQNYIDILVDKGYKVAICEQVEDPKQAK-----GMVKREVIQLVTPGTIIDESAG 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEKEL 204 ++NYL A+ ++ A++D+STG K+S N D ++++++ + +EI+ + Sbjct: 123 EAKENNYLTALHFENNQYGFAYVDLSTGELKVSVLNTIDTILNELISLRTKEIV-----V 177 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 + + + N+ + ISE + + + + + VE I Sbjct: 178 DSSVNDEVLNQIKNLKIL---------ISEQNDTEDSSEVSFASQDVENSVEVEVIKHLI 228 Query: 265 SYIKKTQMVNKPTIGYPERE---DIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDY 320 +Y+K TQ K + + +R + L +D A+ NLE+LR L ++ +LL +D Sbjct: 229 TYLKITQ---KRALSHLQRAVHYEPSQYLKMDYHAKRNLELLRNLRTQKKSGTLLWLLDS 285 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGRL + I PL + +I R + + + + +Q+ L + D+ R + Sbjct: 286 TKTAMGGRLLKQWIDRPLINLKEIEARQSMVENLLTHYFERSGLQEELVNVYDLERLAGK 345 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLP-EELRGAVEKLKKLPQSLEKTLSS 437 + G +D+ +R + I + L ND +E+ ++ ++ + +E+ + Sbjct: 346 VAFGSVNGRDLIQLRTSLEHIPQIRYIIQELNNDSTFDEIFDKLDPIEDIADLIEQAIE- 404 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 D+ P DG ++ G LDE K +A L+ K + T I NLKI N Sbjct: 405 ---DEPPISVTDGNLIKPGYSQELDEYVDAMKNGKAWLAELEAKERQATGINNLKIGFNR 461 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IEV+ + S L +DR+ +QT++N RF T EL + E+ I A + A + Sbjct: 462 VFGYYIEVSKGNLSKL-----PEDRYQRKQTLTNAERFITPELKEKESLILGAESKAKEL 516 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP-IIDNSTNFIVKD 616 E + F + + I ++ + + + +A +D+ + A ++++ ++ +P + N+ + +KD Sbjct: 517 EYKIFTGIRDQIKDEIQRIQELAGAVAALDVLQSFATVSEQGHFVKPELTTNNHSLDIKD 576 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 G HP+VEK + +QS +I ND + D + L+TGPNM GKST++RQ AL V++ Sbjct: 577 GWHPVVEKVMGKQS---YIPNDIKMDDDLD-----VLLITGPNMSGKSTYMRQLALTVVI 628 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+G +VPA A + I D++F+R+G+AD+L SG STFMVEM ET L AT S ++ D Sbjct: 629 AQIGCFVPAKSAKMPIFDQIFTRIGAADDLISGESTFMVEMKETNVALMNATRNSLLLFD 688 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGTAT DG+++A A IEY+H + L +TH+HELT L +SL + N + + N Sbjct: 689 EIGRGTATYDGMALAQAIIEYVHNNIHAKTLFSTHYHELTILDESLDKLQNVHVGAIEKN 748 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 +IFLHK+ G AD SYGI V KLAG+P+ ++ RA IL E Y E Sbjct: 749 GELIFLHKMQEGPADKSYGIHVAKLAGMPDKLLKRADSILNKLESENDFTVDSTESYAEE 808 Query: 857 IQTKESKNN-------------------LSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 +E N L N +++IK NL M+P+ + ++ Sbjct: 809 KHIEEKNENETSEIQEEQLSLFQPEAVSLDSNQSKILKEIKNANLMGMTPMDVMNIVF 866 >gi|148241177|ref|YP_001226334.1| DNA mismatch repair protein MutS [Synechococcus sp. RCC307] gi|189083202|sp|A5GQ22|MUTS_SYNR3 RecName: Full=DNA mismatch repair protein mutS gi|147849487|emb|CAK26981.1| DNA mismatch repair protein MutS [Synechococcus sp. RCC307] Length = 885 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 283/824 (34%), Positives = 457/824 (55%), Gaps = 34/824 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TPM+R Y+E+K+ +P+ ++ YR+GDF+E FF+DALL SR L +TLT + GK +G+ +PM Sbjct: 80 TPMLRHYVELKAAHPERVLLYRLGDFFECFFEDALLTSRLLELTLTGKEGGKSIGR-VPM 138 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G+P H A Y +L++ GH +A+C+Q+E+ +L++R++ R++TPGT+ E+ Sbjct: 139 AGIPHHAAERYCSELVRRGHAVALCDQLET-----TAAKGALLKRDITRVLTPGTVLEEG 193 Query: 144 LLSPTDSNYLMAVA-RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK 202 +L+ +N+L AV W +A D+STG + H+R + ++ ++ +E Sbjct: 194 MLAARRNNWLAAVVLDDEQRWGLAVADVSTGELLL----HERQGTTELQQQLLQLEAAEL 249 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAA 261 L E G QP F+ + ++ + + + ++ G + + + AA Sbjct: 250 LLPGIEAAEWCPD-GLGLTQQPRTPFEAASADRALKQRFGVRNLEGLGLADHPLARRAAG 308 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 I+Y+ +Q + + P+ L +D R NLE+ T G + SLL ID Sbjct: 309 GLIAYLDASQPGSTVPLERPQLVFAGDALVLDHQTRRNLELTATQRDGQFQGSLLWAIDR 368 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 S T GGR + +PL D+T I R ++I ++ L ++++L+ D+ R R Sbjct: 369 SHTAMGGRALRRWLEAPLLDATAIRGRQEAITELVEQRPLRLSVRRLLRPMADLERLAGR 428 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 GR +D+ + DG+ + +L LK+ L + L Q L + L L Sbjct: 429 CGAGRASARDLVALADGLER-LPLLADLLKSSSAAPLADLQQPRPDL-QQLAELLRFQLV 486 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D P +GG + DG D LD+ R+ D+ + +A ++ + + + NL+++ + + G Sbjct: 487 DQPPMSLSEGGLIHDGVDEDLDDLRNRLDEQENWLAGVEKRERKASSNPNLRLQFHRSFG 546 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 YF+ V+ + A+ + D +I RQT+SN RF T EL + E RI + E + Sbjct: 547 YFLAVSRAKATAVP------DHWIRRQTLSNEERFVTPELKEREGRILQLKARSHQREYD 600 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F L + + EQ+ ++ +A++ +A +D LA LA Q YCRP + + ++ GRHP Sbjct: 601 LFCRLRDQVGEQATAIRDAARAVASLDALAGLAELAATQGYCRPELTDGRCLEIEGGRHP 660 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE+ L + + F+ N L + + L +LTGPN GKS +LRQ ++ +MAQMG Sbjct: 661 VVEQLLSESA---FVPNSVALGHGDKPD---LVVLTGPNASGKSCYLRQCGVLQLMAQMG 714 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S++PA A I + D++F+RVG+ D+LASG+STFMVEM ETA+IL A+ +S V+LDEIGR Sbjct: 715 SWIPAERAAIALADRIFTRVGAVDDLASGQSTFMVEMAETANILQHASERSLVLLDEIGR 774 Query: 741 GTATLDGLSIAWATIEYLHETN----RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 GTAT DGLSIAWA E+L R + ATH+HEL L+ S N + V + + Sbjct: 775 GTATFDGLSIAWAVAEHLASAPPHGLGARSIFATHYHELNALAGSHSNVANFQVVVEEQD 834 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 ++FLHKV+PG AD SYGI+ +LAG+P +V+ RA +L+ E Sbjct: 835 AELVFLHKVMPGGADRSYGIEAARLAGVPPSVVQRARQMLERIE 878 >gi|300711943|ref|YP_003737757.1| DNA mismatch repair protein MutS [Halalkalicoccus jeotgali B3] gi|299125626|gb|ADJ15965.1| DNA mismatch repair protein MutS [Halalkalicoccus jeotgali B3] Length = 882 Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust. Identities = 302/920 (32%), Positives = 489/920 (53%), Gaps = 66/920 (7%) Query: 1 MTKEFSSPQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDAL 60 M + +P K+ +L TPMMRQY ++ +SLV +++GDFYE F + A Sbjct: 1 MERALGAPAKMKERHGEL-------TPMMRQYCDLCERYDESLVLFQVGDFYETFCEAAE 53 Query: 61 LASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR 120 +++R L ITLTKR G PM G+P+ +A YI+ L+ G R+A+ +Q++ P EA Sbjct: 54 VSARLLEITLTKREDSTGT-YPMAGIPIDSAESYIETLLDAGFRVAVADQVQDPEEAS-- 110 Query: 121 GNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRT----EWAIAWIDISTGIFK 176 +V R V R+VTPGTLTE +LL D+NY+ A+A + E+ +A++D+STG F Sbjct: 111 ---GVVDRAVTRIVTPGTLTEAELLRSEDNNYVAALAEDESGDEREYGLAFLDVSTGDFV 167 Query: 177 ISTSNHDRLISD-IMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISES 235 + + + I D I R P E I E F++ V P+ F E Sbjct: 168 ATGAISEETIRDEISRFAPAEAIVG----PGLEGFDGFDSDCMVTPYDPSRFALEGARE- 222 Query: 236 RIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPE---REDIQSTLFI 292 + D Y T S +++ A A +SY + + + Y R + + + + Sbjct: 223 -LLDSYFGTPEKRLASDAEIR--ACGALLSYAEYARGGQDGRLDYLNHLTRYEPREYMLL 279 Query: 293 DSAARSNLEIL--RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDS 350 D A +LE+ R + G E ++L +D + G R + + PL D +I RLD+ Sbjct: 280 DRVAFRSLELFEPRAVGGDSEHTILGVLDETACALGRRKLTDWLRRPLLDRARIEARLDA 339 Query: 351 INFFIQNPILINP---IQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIR--SGINIL 405 ++ + L+ P + +L D+ R ++R+ GR +D+ ++D + I Sbjct: 340 VSEWT---TLVGPRETVHDLLSDVYDIERLIARVSRGRANARDLRALKDTLDRVPEIRAA 396 Query: 406 NLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETR 465 +++D ELR +++L+ + + +++ ++ + P +G + G DA LD R Sbjct: 397 MAGVESDTLHELREGLDELEGVRELIDRAIA----ESPPIEITEGDVIAPGYDADLDGLR 452 Query: 466 SLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIH 525 + K I SL+ + E T + +LK+ N GY+IEVT+ + + ++ + Sbjct: 453 ETEREGKEWIDSLEARERERTGVDSLKVGFNQVHGYYIEVTNPNLERVPEN------YTR 506 Query: 526 RQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAI 585 RQT+ N RF T EL E+ I A A +E E F + + +SE + ++ +A Sbjct: 507 RQTLKNSERFYTPELKQREDEIITAEERADDLEYELFVEVRQEVAGESERVQAVAETLAT 566 Query: 586 IDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPN 645 +D+ ++LA +A + Y RP ID ++ GRHP+VE+T Q+S F+ N +L+ P+ Sbjct: 567 LDVLVSLAAVAAKYGYARPEIDEEPGIAIEGGRHPVVERT--QES---FVPNGAELT-PD 620 Query: 646 DKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADN 705 ++ L +LTGPNM GKST++RQ ALI I+AQ+GS+VPAS A IGIVD++F+RVG++D+ Sbjct: 621 ER----LAVLTGPNMSGKSTYMRQIALITILAQIGSFVPASRARIGIVDRVFTRVGASDD 676 Query: 706 LASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCR 765 +A GRSTFMVEM E A+IL A+ +S V+LDE+GRGT+T DGL+IA A EY+H Sbjct: 677 IAGGRSTFMVEMSELATILRGASERSLVLLDEVGRGTSTADGLAIARAITEYVHSEVGAL 736 Query: 766 GLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLP 825 L ATH HELT+L+ +L N + +++G+ F H V G A SYGI+V + AG+P Sbjct: 737 TLFATHHHELTELADALAGGFNLHFAATQTDDGVTFRHDVSRGAATASYGIEVARAAGVP 796 Query: 826 NTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKN-------DKLFVEKIK 878 + V+ R+ ++ + + + + +S +N S D E ++ Sbjct: 797 DRVVERSRALVAEGSPENATDGGETIVGSRTLPNPDSDDNPSSGGPAPSSADGELTEALR 856 Query: 879 CLNLDEMSPLTALKTLYAVK 898 L++ M+P+ AL TL +K Sbjct: 857 ALDVANMTPIEALTTLDRLK 876 >gi|119898343|ref|YP_933556.1| DNA mismatch repair protein MutS [Azoarcus sp. BH72] gi|119670756|emb|CAL94669.1| DNA mismatch repair protein [Azoarcus sp. BH72] Length = 845 Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust. Identities = 294/875 (33%), Positives = 453/875 (51%), Gaps = 39/875 (4%) Query: 29 MRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPV 88 M+QY+ IK +PD+L+FYRMGDFYELFF+DA A+R L ITLT RG+ G I M GVP Sbjct: 1 MQQYLRIKEQHPDTLLFYRMGDFYELFFEDAEKAARLLDITLTTRGQSAGMPIRMAGVPF 60 Query: 89 HTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPT 148 H Y+ +L+K+G + I EQ+ P K + R V R+VTPGTLT+ LL Sbjct: 61 HAVEQYLARLVKLGESVVIAEQVGEP-----GATKGPMERAVSRIVTPGTLTDAALLDDR 115 Query: 149 DSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHAE 208 L+A R +AW++++ G F++ + L + R+ P E++ + Sbjct: 116 RDALLLAANMHRGVLGMAWLNLANGEFRLMECPAESLQAQFERLRPAEVLIPD-----GL 170 Query: 209 YKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI-SYI 267 L ETL + FD + + ++ + FG AAAA+ Y Sbjct: 171 ALPLMETLAPALRRLADWQFDADTAHRLLTTHFGTRDLAGFGVEEAPVALGAAAALYDYA 230 Query: 268 KKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGG 327 K TQ + + E L +D+A R NLE+ TL G +LL +D +T G Sbjct: 231 KATQRQSLAHLTGLRLEREAEFLRLDAATRRNLELTETLRGEPSPTLLSLLDTCMTSMGS 290 Query: 328 RLFAERIASPLTDSTKINTRLDSINFFIQNP--ILINPIQKILKSSPDVPRSLSRLKIGR 385 R + PL D T R ++ + + + ++ L+ DV R R+ + Sbjct: 291 RWLRHALHHPLRDRTIPAARQQAVAALVGDGDGLHAQAVRGALRGVADVDRITGRIALRN 350 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPT 445 P+D++ +R+ + S + L L E + G + + L + L ++D+ Sbjct: 351 ARPRDLSALRESL-SRLPELRQTLAQIGDEGMVGGLAAALDVQPELLQCLQRAIADEPAA 409 Query: 446 FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEV 505 RDGG + G DA LDE R ++ + +L+ + E + I NLK++ N G++IEV Sbjct: 410 MVRDGGVIAAGYDAELDELRGIQTNCGEFLMALEARERERSGIANLKVEFNKVHGFYIEV 469 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEIL 565 + ++A + D + RQT+ N+ R+ T EL E++ +A AL E +E L Sbjct: 470 SHANADKVPDD------YRRRQTLKNVERYITPELKAFEDKALSAQERALAREKALYEAL 523 Query: 566 SNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKT 625 +A+ +L ++ +A +D A A A Y RP+ + ++ GRHP+VE+ Sbjct: 524 LDALSPYIPALQGCARALATLDGLAAFAEAALRYGYVRPVFSDQPGIEIRGGRHPVVERQ 583 Query: 626 LKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPA 685 ++ FI ND L ++ ++ ++TGPNMGGKSTF+RQ ALI ++A +GS+VPA Sbjct: 584 VED-----FIQNDARLG-----STRRMLMITGPNMGGKSTFMRQVALICLLAHVGSFVPA 633 Query: 686 SYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATL 745 A +G +D +F+R+G++D+LASGRSTFMVEM E ++IL+ AT S V++DEIGRGT+T Sbjct: 634 QSAVLGPLDAIFTRIGASDDLASGRSTFMVEMTEASAILHGATEHSLVLMDEIGRGTSTF 693 Query: 746 DGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKV 805 DGL++A+A +L E NR L ATH+ ELT L+ N L + I+FLH + Sbjct: 694 DGLALAFAIARHLLEKNRSLTLFATHYFELTRLNGEYPECANVHLDAVEHGHRIVFLHAL 753 Query: 806 IPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--KLYHHNQKDMRLYYPEIQTKESK 863 G A SYGI+V LAG+P VI A L+ E ++ Q D+ P+ + Sbjct: 754 EDGPASQSYGIEVAALAGIPAPVIRDAKRRLRALENREVGAGPQADLFAALPD----DDD 809 Query: 864 NNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 LS + + +I + D +SP AL+ LYA+K Sbjct: 810 APLSHPVLIALAEI---DPDSLSPREALERLYALK 841 >gi|229552974|ref|ZP_04441699.1| DNA mismatch repair protein MutS [Lactobacillus rhamnosus LMS2-1] gi|229313663|gb|EEN79636.1| DNA mismatch repair protein MutS [Lactobacillus rhamnosus LMS2-1] Length = 848 Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust. Identities = 293/827 (35%), Positives = 446/827 (53%), Gaps = 59/827 (7%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY IK+ PD+ +FYR+GDFYELF DDA+ ++ L +TLT R K IPM GVP Sbjct: 1 MMQQYNAIKAQYPDAFLFYRIGDFYELFNDDAIKGAQLLELTLTARNKSADDPIPMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H Y+ LI G+++AICEQ+E P +A +V+R V++L+TPGT + + + Sbjct: 61 HHAVQSYVDILIDHGYKVAICEQMEDPKKAV-----GMVKRAVIQLITPGTNVDIKAGAA 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHA 207 +NY+ AV +A A+ D+STG K++ D + + ELS Sbjct: 116 KTNNYITAVLPHAAGYAFAYGDVSTGELKVT--------------DLKSKFALQNELS-- 159 Query: 208 EYKSLFETLGNVAVAQPNVFFDHSIS----ESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 L + P D + R+ T + GS+ + T A A Sbjct: 160 -------ALATKEIVVPEDLNDEDAAMLKKGERLLSVQQDTKPTSEGSYVSQDLTDPAEA 212 Query: 264 ------ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILR-TLSGSREQSLLK 316 ++Y+ TQ + I + L +D ARSNL+IL+ + +G + +LL Sbjct: 213 AVVQMLMAYLLNTQKRSLAHIQKAVAYQPSAYLEMDQDARSNLDILQNSRTGRKGDTLLS 272 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D + T GGRL + + PL D I+ R + + +++ + +Q+ L D+ R Sbjct: 273 LLDATKTAMGGRLLKQWLERPLLDIDAISVRQNQVQDLLEHFFERSELQERLTKVYDLER 332 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKT 434 R+ G +D+ ++ + I ++ K D +ELRG ++ + + + ++ Sbjct: 333 LAGRVAFGTVNGRDLIQLQTSLDQVPAIQDVLSKLDDGSFKELRGKIDPVSDVAGLIRRS 392 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + + P DGG + G + LD R SK+ IA L+ + T I NL+I+ Sbjct: 393 IEP----EPPISVTDGGLILRGYNEKLDAYRDAMKNSKQWIAELEASERKATGIHNLRIR 448 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GYFIEVT S+ D + R+ +QT++N RF T EL + E I A S+ Sbjct: 449 YNKVFGYFIEVTKSNL-----DKVPEGRYERKQTLTNAERFITPELKEKETLILEAQESS 503 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI- 613 +E + F+ + + Q + L + + I+ +D+ + A +A+ +Y RP + T+ I Sbjct: 504 TALEYDLFQDIREKVKAQIKRLQHLAAQISALDVLQSFATVAENNHYVRPTMHAGTHDIN 563 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 VK GRHP+VE L Q S +I ND + D + L+TGPNM GKST++RQ ALI Sbjct: 564 VKGGRHPVVEHVLGQDS---YIPNDVIMDRDTD-----MLLITGPNMSGKSTYMRQLALI 615 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 VIMAQ GS+VPA A + I D++F+R+G+AD+LA+G STFMVEM+E + L+ AT S + Sbjct: 616 VIMAQAGSFVPADTADLPIFDQIFTRIGAADDLANGESTFMVEMLEANAALSHATASSLI 675 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 + DEIGRGTAT DG+++A A IEYLH+ + L +TH+HELT LS SL + N + Sbjct: 676 LFDEIGRGTATYDGMALAQAIIEYLHDHVHAKTLFSTHYHELTSLSDSLAKLKNVHVGAV 735 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + + ++FLHK++PG AD SYGI V KLAGLP ++SRA ILK E Sbjct: 736 EEHGNLVFLHKMMPGPADKSYGIHVAKLAGLPADLLSRADTILKQLE 782 >gi|281492893|ref|YP_003354873.1| DNA mismatch repair protein MutS [Lactococcus lactis subsp. lactis KF147] gi|281376545|gb|ADA66031.1| DNA mismatch repair protein MutS [Lactococcus lactis subsp. lactis KF147] Length = 840 Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust. Identities = 290/884 (32%), Positives = 488/884 (55%), Gaps = 63/884 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L +TLT R K+ IPM G Sbjct: 6 SPGMQQYLDIKQDYPDAFLLFRMGDFYELFYDDAVNAAQILELTLTSRNKNSENPIPMAG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A YI KL+ +G+++A+ EQ+E P +A +V+R V +++TPGT + Sbjct: 66 VPHHAAAEYIDKLVDLGYKVAVAEQMEDPKKAV-----GIVKRAVTQVITPGTTIDTA-- 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204 + D+N+L+A+ +A++++D+STG FK++ S ++ +I + REI+ + L Sbjct: 119 NSVDNNFLVAIDFKDKHYALSYMDLSTGEFKVTELSEFSAVVGEIASLKAREIV-AGFTL 177 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 ++ K +FE N+ +++ I E+ + D +T + E A+ + Sbjct: 178 DESQLK-VFERQMNLLISE-----QIEIPENLLIDLSGLTAL---------ENQVASKLL 222 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT 323 +Y+K+TQM + + E +I+ L +D A +S+LE+ +++ +L +D + T Sbjct: 223 AYVKETQMRDLSHLQEVEHYEIKDFLQMDFATKSSLELTANKRENKKHGTLYWLLDETKT 282 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G R+ I PL ++ I R++ + F+ + + + + LK D+ R SR+ Sbjct: 283 AMGTRMLRSWIDRPLVSNSAIQKRMEIVQIFLDHFFERSDLIEALKGVYDLERLASRVSF 342 Query: 384 GRGEPKDIAVIRDGIRSGINILNLF-LKNDLP-EELRGAVEKLKKLPQSLEKTLSSMLSD 441 G+ P D + + + + I N+ + N+ P EEL+ +L ++P+ L ++S +S+ Sbjct: 343 GKAVPVDFLQLANSLSNVPAIKNILGMLNEAPLEELKS---QLDEIPE-LSGLINSAISE 398 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + +GG ++ G +A LD+ R + IA L+ +T I L+I +N GY Sbjct: 399 NASRTITEGGIIKKGYNAQLDKYREALENGTSWIAKLEADEKAKTGISTLRIDYNRKDGY 458 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 + +T S + + + F + T+ N RF + EL ++E + A + +E + Sbjct: 459 YFHITQSQLNSVP------EHFYRKATLKNSERFGSQELTEIEEIMLEAREKSSSLEYDL 512 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI-VKDGRHP 620 F L + L ++ IA ID +L+++A++Q Y RP + + + + +K GRH Sbjct: 513 FMGLRTETEQYIGRLQALAKTIAEIDCLQSLSVVAEKQGYIRPTLTDGSRIVEIKGGRHA 572 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE + Q ++ ND +L D + L+TGPNM GKST++RQ AL VIMAQ+G Sbjct: 573 VVEAVMGAQE---YVPNDIELPEQTD-----IQLITGPNMSGKSTYMRQFALTVIMAQIG 624 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA A++ I D +F+R+G++DNL SG STFMVEM E + +A+++S +I DE+GR Sbjct: 625 SFVPAETANLPIFDAIFTRIGASDNLISGESTFMVEMSEANHAIQKASSRSLIIFDELGR 684 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A IEY+H+ + L ATH+HELTDL ++L N + + N + Sbjct: 685 GTATYDGMALAQAIIEYVHDHIGAKTLFATHYHELTDLDEALDHLDNVHVATLEQNGNVT 744 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE------KLYHHNQKDMRLYY 854 FLHK+ G AD SYGI V K+AGLP ++ RA IL+ E K Q+ + L+ Sbjct: 745 FLHKITEGPADKSYGIHVAKIAGLPQPLLERADLILQKLENKPLPAKKVADEQEQLSLF- 803 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + ++N +EKIK N+D M+ AL L+ +K Sbjct: 804 ----------DFTENSSEIIEKIKRQNVDNMTAREALNFLWELK 837 >gi|320547650|ref|ZP_08041935.1| DNA mismatch repair protein HexA [Streptococcus equinus ATCC 9812] gi|320447725|gb|EFW88483.1| DNA mismatch repair protein HexA [Streptococcus equinus ATCC 9812] Length = 856 Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust. Identities = 294/895 (32%), Positives = 474/895 (52%), Gaps = 70/895 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY+++K PD+ + +RMGDFYELF+DDA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYLDVKKDYPDAFLLFRMGDFYELFYDDAVKAAQILEISLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI L+++G+++AI EQ+E P +A +V+R VV+++TPGT D Sbjct: 67 VPYHSAQQYIDVLVEMGYKVAIAEQMEDPKKAV-----GVVKREVVQVITPGTAV-DSTK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 +N+L+A+ + +A++D+STG + S S+ L S+I+ + REI+ EL Sbjct: 121 PDNANNFLVAIDSDGKTFGLAYMDVSTGEFYATSLSDFASLKSEILNLKAREIVVG-YEL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E SL V Q N+ S + R D + I + + + +E +AA + Sbjct: 180 SEEEKHSL--------VKQLNLLL--SFEQERFEDVHLIDS-----NLASLEISAAEKLL 224 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT 323 Y+ TQ + +I+ L + +S+L++L S++ SL +D + T Sbjct: 225 QYVHTTQKRELSHLQKLVHYEIKDYLQMSYTTKSSLDLLENARTSKKHGSLYWLLDETKT 284 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL I PL + +I R + I F+ N + + LK D+ R SR+ Sbjct: 285 AMGMRLLRNWIDRPLVNREQIEERQNIIQVFLDNFFERSDLTDSLKGVYDIERLASRVSF 344 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 G+ PKD+ + + I + + P L V + LP+ LE +SS ++ D Sbjct: 345 GKANPKDLLQLGHTLGQVPTIKAILESFESPY-LDKLVNSIDTLPE-LESLISSAIAPDA 402 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 +G +R G D +LD+ R + + IA ++ K + I NLKI +N GY+ Sbjct: 403 QAVITEGSIIRTGFDETLDKYRKVMREGTSWIAEIEAKERAASGITNLKIDYNKKDGYYF 462 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 VT+S+ S++ D F + T+ N RF T EL +E + A + +E + F+ Sbjct: 463 HVTNSNLSLVP------DYFFRKATLKNSERFGTAELAKIEGEMLEAREQSASLEYDIFK 516 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 + + L + ++ I+ +D+ +LA++A+ +Y RP ++S ++ GRH +VE Sbjct: 517 RVRAQVERYISRLQDLAKAISTVDVLQSLAVVAENNHYVRPTFNDSHEIKIEKGRHAVVE 576 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGK---LWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 K + Q PN G+ + L+TGPNM GKST++RQ AL VIMAQMG Sbjct: 577 KVMGTQEY-----------IPNTITFGRNTNIQLITGPNMSGKSTYMRQLALTVIMAQMG 625 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 SYV A + + D +F+R+G+AD+L SG+STFMVEM+E + +A++QS ++ DE+GR Sbjct: 626 SYVAAESVSLPVFDAIFTRIGAADDLISGQSTFMVEMMEANQAIKRASDQSLILFDELGR 685 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A + IEY+H+ + + ATH+HELT LS +L N + + N + Sbjct: 686 GTATYDGMALAQSIIEYIHDHIGAKTMFATHYHELTALSTTLTHLVNVHVATLERNGDVT 745 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK--LYHHNQKDMRLYYPEIQ 858 FLHK+ G AD SYGI V K+AGLP ++ RA IL E HH PE+ Sbjct: 746 FLHKIAEGPADKSYGIHVAKIAGLPEDLLQRADSILTNLESGAAQHH-------LTPEVD 798 Query: 859 TK------ESKNNLSKNDKLF---------VEKIKCLNLDEMSPLTALKTLYAVK 898 ++ E +++ LF +E +K ++L ++P+ A+ +Y +K Sbjct: 799 SEPLATESEVSEPVAEQLSLFAEDSSNQEVIEALKKVDLMNLTPMQAMNVIYELK 853 >gi|116513155|ref|YP_812062.1| DNA mismatch repair protein [Lactococcus lactis subsp. cremoris SK11] gi|123320077|sp|Q02VS3|MUTS_LACLS RecName: Full=DNA mismatch repair protein mutS gi|116108809|gb|ABJ73949.1| DNA mismatch repair protein MutS [Lactococcus lactis subsp. cremoris SK11] Length = 840 Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust. Identities = 292/884 (33%), Positives = 481/884 (54%), Gaps = 63/884 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L +TLT R K+ IPM G Sbjct: 6 SPGMQQYLDIKQDYPDAFLLFRMGDFYELFYEDAVNAAQILELTLTSRNKNSENPIPMAG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A YI KL+ +G+++A+ EQ+E P +A +V+R V +++TPGT + Sbjct: 66 VPHHAATEYIDKLVDLGYKVAVAEQMEDPKKAV-----GIVKRAVTQVITPGTTIDTA-- 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204 + D+N+L+A+ +A++++D+STG FK++ S ++ I + REI+ L Sbjct: 119 NSVDNNFLVAIDFKAKRYALSYMDLSTGEFKVTELSEFSAVVGGIASLKAREIVVG-FPL 177 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 A+ K +FE N+ +++ I E+ + + +T + E AA+ + Sbjct: 178 DEAQVK-VFERQMNLLISE-----QFEIPENLLIELSGLTAL---------ENQAASKLL 222 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT 323 +Y+K+TQM + + E +I+ L +D A +S+LE+ +++ +L +D + T Sbjct: 223 AYVKETQMRDLSHLQEVEHYEIKDFLQLDFATKSSLELTANKRENKKHGTLYWLLDETKT 282 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G R+ I PL ++ I R++ + F+ + + + + LK D+ R SR+ Sbjct: 283 AMGTRMLRSWIDRPLVSNSAIQKRMEIVQVFLDHFFERSDLIEALKGVYDLERLASRVSF 342 Query: 384 GRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 G+ P D + + + + I N+ L ELR +L ++P+ L ++S +S+ Sbjct: 343 GKAVPVDFLQLANSLSNVPAIKNILEVLDETSLNELRS---QLDEIPE-LSGLINSAISE 398 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + +GG ++ G + LD+ R + IA L+ +T I L+I +N GY Sbjct: 399 NASRTITEGGIIKKGYNVQLDKYREALENGTSWIAKLEADEKAKTGISTLRIDYNRKDGY 458 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 + +T S + + + F + T+ N RF + EL ++E + A + +E + Sbjct: 459 YFHITQSQLNSVP------EHFYRKATLKNSERFGSQELTEIEEIMLEAREKSSSLEYDL 512 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI-VKDGRHP 620 F L + L ++ IA ID +L+++A++Q Y RP + + + +K GRH Sbjct: 513 FMGLRAETEQYIGRLQALAKTIAEIDCLQSLSVVAEKQGYIRPTLTEGSRIVEIKGGRHA 572 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE + Q ++ ND +L D + L+TGPNM GKST++RQ AL VIMAQ+G Sbjct: 573 VVEAVMGAQE---YVPNDIELPEQTD-----IQLITGPNMSGKSTYMRQFALTVIMAQIG 624 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA A++ I D +F+R+G++DNL SG STFMVEM E + +AT++S +I DE+GR Sbjct: 625 SFVPAKTANLPIFDAIFTRIGASDNLISGESTFMVEMSEANHAIQKATSRSLIIFDELGR 684 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A IEY+HE + L ATH+HELTDL K L N + + N + Sbjct: 685 GTATYDGMALAQAIIEYVHEYIGAKTLFATHYHELTDLDKELDHLDNVHVATLEQNGNVT 744 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE------KLYHHNQKDMRLYY 854 FLHK+ G AD SYGI V K+AGLP T++ RA IL+ E K Q+ + L+ Sbjct: 745 FLHKITDGPADKSYGIHVAKIAGLPQTLLERADLILQKLENKPLPAKKIADEQEQLSLF- 803 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + ++N +EKIK N+D M+ AL L+ +K Sbjct: 804 ----------DFAENSSEIIEKIKGQNVDNMTAREALNFLWELK 837 >gi|154249929|ref|YP_001410754.1| DNA mismatch repair protein MutS [Fervidobacterium nodosum Rt17-B1] gi|189030718|sp|A7HMG4|MUTS_FERNB RecName: Full=DNA mismatch repair protein mutS gi|154153865|gb|ABS61097.1| DNA mismatch repair protein MutS [Fervidobacterium nodosum Rt17-B1] Length = 823 Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust. Identities = 278/821 (33%), Positives = 461/821 (56%), Gaps = 49/821 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +NLK TPMM+QY++IK DS++ +R+GDFYE FFDDAL S+ L I LTKR + Sbjct: 9 KNLKI-TPMMKQYLDIKDKYKDSILLFRLGDFYEAFFDDALTVSKILNIVLTKR-----Q 62 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 D PM G+P H ++Y++KL+ G+++AICEQ+E P AK +V+R V R++TPGT+ Sbjct: 63 DAPMAGIPYHALDNYLKKLVDAGYKVAICEQMEDPALAK-----GIVKREVTRVITPGTI 117 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWI--DISTGIFKISTSNHDRLISDIMRIDPREI 197 ED+LL+ T++NY+M++ + + I+ I D STG I ISD ++ Sbjct: 118 IEDELLT-TENNYMMSLYETK-DGKISCILTDSSTGEVIIKQMESIDEISDFLQTHRVSQ 175 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTF--GSFSQV 255 I + + + ++ LG + ++++ I I + Y + +++ F G S+ Sbjct: 176 IICPENF-YDKIVNIARVLGIFVDKLDDWYYENDIQ--TIKEAYGLVSIEHFELGEASK- 231 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 A I YI T + + + P+ D + +DS NL ++ G + ++L Sbjct: 232 ---PLCATIKYINYT-LNRQAKLKVPKTLDESKYMTLDSTTVENLSLI---PGDKGKNLY 284 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 ++ + T GGRL I PL D +I RL + F ++P+L N I++ L D+ Sbjct: 285 DVLNKTNTPMGGRLLKWVILHPLKDRNEIEKRLWYVEAFYEDPLLTNEIREYLNGVYDLE 344 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R ++RL+ +PKD+ ++ + I N+ +L + L ++ +E TL Sbjct: 345 RIINRLEYDSAKPKDLISLKTTLEVVEPIKEALSTNEKLIQLAQMLPDLSQIKVKIENTL 404 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 +L K +++G LDE R L S + + + +T I+ LK+ Sbjct: 405 LEEFEGELGEGK----IIKEGVSKELDEYRELLYHSNEKLKEFEERERAKTGIQKLKVSF 460 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 NN GY+IE+ + + QT+ N R+TT EL + E +I A Sbjct: 461 NNVFGYYIEIPKGQVKF------APQEYTRIQTLVNAERYTTTELKEFEQKILAAKEKVE 514 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 ++E F+ + + + ++ L +++++ ID+ A ++K +Y +P I +S F V Sbjct: 515 ILEKTIFKQICDELKGYTQDLRKLAEMLSWIDVYSNFAYVSKLYSYSKPEISDS-EFKVL 573 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 +GRHP+VE+ + + F+ ND +S + ++++LTGPNM GKST++RQ LI + Sbjct: 574 NGRHPVVERFVDE-----FVPNDIYMS-----DELRMYILTGPNMSGKSTYIRQVGLIAL 623 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 M Q+G +VPA YA + + D++F+R+G+ D++++G+STF+ EM E A IL++AT +S V+L Sbjct: 624 MTQIGCFVPAQYAKVPVFDRIFTRMGARDDISTGKSTFLTEMNEVALILSKATQKSLVLL 683 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGT+T DG+SIAWA EY++ +C+ + ATHF ELT+LS+ N T+ V ++ Sbjct: 684 DEVGRGTSTFDGISIAWAMSEYIYNEIKCKTIFATHFTELTELSEGYSGIKNLTVDVKET 743 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 +G++FLHKV+ G+AD SYGI+V +AGLP ++I RA +IL Sbjct: 744 PDGVVFLHKVVEGVADRSYGIEVAAIAGLPESIIERAKEIL 784 >gi|294340099|emb|CAZ88467.1| DNA mismatch repair protein [Thiomonas sp. 3As] Length = 860 Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust. Identities = 302/886 (34%), Positives = 475/886 (53%), Gaps = 40/886 (4%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 ++ + TP+M+QY+ +K+ +P +L+ RMGDFYELF+DDA A+R L ITLT+RG+ G+ Sbjct: 3 SISAHTPLMQQYLRMKAEHPGTLLLCRMGDFYELFYDDAEKAARLLDITLTRRGQSAGEP 62 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 + M GVP + Y+ KL+K+G AICEQI P +AK LV R VVR+VTPGTLT Sbjct: 63 VIMAGVPAQALDGYLAKLVKLGESAAICEQIGDPAQAK-----GLVERRVVRVVTPGTLT 117 Query: 141 EDQLLSPTDSNYLMAVA---RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREI 197 E LL L+AVA R EW +AW+ ++ G ++ L + RI P E+ Sbjct: 118 EQTLLDDKRDAILLAVAPPKSARGEWGLAWMALTGGGLTLAQCEAAALPDWLARIAPAEV 177 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 ++ + + E + T +P FD ++ ++ + +D FG+ + Sbjct: 178 LWPQHQSLPNEPRWPHTT------ERPEWHFDAALGLRKLCAQLQVAHLDGFGAQALGAA 231 Query: 258 TAAAAAISYI-KKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 AAAAA+ ++TQ P + E + +L +D+ AR NLEIL+ L G +LL Sbjct: 232 HAAAAALLTYAEQTQGGTLPLLADLRVERAEHSLRLDAVARRNLEILQPLRGEDSPTLLS 291 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D T AG RL + + +P D+ R ++ I + ++ L+ D+ R Sbjct: 292 HLDSCQTAAGSRLLHDWLQAPPRDANVARARHAALQALIDGDLAA--LRGSLRGMADLER 349 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEE---LRGAVEKLKKLPQSLEK 433 +R+ + + +P++++ +RDG++ L + E L ++ LP Sbjct: 350 IAARIALKQAKPRELSALRDGLQR----LPALRRQAAAFERCALLQTIDAQLDLPPEPAA 405 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L ++ + RDGG + DA LDE R++ + L+ + T I NL++ Sbjct: 406 LLQRAIAAEPALNLRDGGVIAADFDAELDELRAIDTDCGSFLMELEQRERARTGIANLRV 465 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 ++N G+FIEVT + D + RQT+ R+ T EL E++ +A + Sbjct: 466 QYNKVHGFFIEVTHGQTDKVPDD------YRRRQTLKGAERYITPELKAFEDKALSAQDR 519 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL E FE + A+ + A+Q +A++D ALA A + P + Sbjct: 520 ALAREKVLFEGVIEALQPALADIRRAAQAVALLDTLAALAERASTFGWVCPEFVEAPGID 579 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + GRHP++E + + FI NDC L +L +LTGPNMGGKST++RQ ALI Sbjct: 580 IVGGRHPVIESRVDR-----FIPNDCQLD-----EQRRLLILTGPNMGGKSTYMRQTALI 629 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 ++A +GSYVPA A IG +D +F+R+G++D+LA G+STFMVEM ETA+IL QAT S V Sbjct: 630 ALLAYLGSYVPARSARIGPLDAIFTRIGASDDLAGGQSTFMVEMAETAAILRQATPHSLV 689 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DE+GRGT+T DGL++A A LH+ NR L ATH+ ELTD+ + N + + Sbjct: 690 LMDEVGRGTSTFDGLALAAAIAAQLHDRNRSLTLFATHYFELTDMVLRHPQAANVHVGAA 749 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 ++ +GI+FLH+V G A SYG+QV +LAG+P VI A L E+ + + + L+ Sbjct: 750 ETPQGIVFLHEVREGPASRSYGVQVAQLAGVPPAVIRDARKRLDALERQHQQQEAQLDLF 809 Query: 854 YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + E++ + + +E + ++ D ++P AL+TLY +KA Sbjct: 810 AASAEIDEAEPAPAPTHEAVIEALDDIDPDTLTPRQALETLYRLKA 855 >gi|325697261|gb|EGD39147.1| DNA mismatch repair protein HexA [Streptococcus sanguinis SK160] Length = 849 Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust. Identities = 293/888 (32%), Positives = 474/888 (53%), Gaps = 63/888 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYPDAFLLFRMGDFYELFYDDAVNAAQILEISLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI L++ G+++AI EQ+E P EAK +V+R VV+++TPGT+ + Sbjct: 67 VPYHSAQQYIDVLVESGYKVAIAEQMEDPKEAK-----GVVKREVVQVITPGTVVDS--- 118 Query: 146 SPTDS--NYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEK 202 S DS N+L+A+ + +A++D+ TG F++++ L+ +I + RE++ Sbjct: 119 SKPDSANNFLVALDYSDGLYGLAYMDLVTGEFQVTSLEDFALVCGEIRNLKAREVVLG-- 176 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS-FSQVEKTAAA 261 +L E V Q N+ S ++ + D V G S +E+ AA Sbjct: 177 -------YTLPEAEEQVLAGQMNLLL--SYVQTALDD------VQLLGEELSPMERQAAG 221 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 + Y+ +TQM + + +I+ L +D A +++L++ SG + SL +D Sbjct: 222 KLLEYVHRTQMRELSHLKKAQHYEIKDFLQMDYATKASLDLTENARSGKKHGSLYWLMDE 281 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGR+ I PL D +I+ R + + F+ + + + + LK D+ R SR Sbjct: 282 TKTAMGGRMLRSWIQRPLIDEARISQRQNVVEVFLDHFFERSDLTESLKGVYDIERLASR 341 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + G+ PKD+ + + + + L+ L +E L +P+ L +SS +S Sbjct: 342 VSFGKTNPKDLLQLAATL-GNVPQIKAILQGIGSPHLARLIEDLDPIPE-LAGLISSAIS 399 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D +G +R G D +LD+ R + IA L++K + I NLKI +N G Sbjct: 400 PDALHIITEGNIIRTGFDETLDQYRLVLRDGTGWIAELEVKERANSGISNLKIDYNKKDG 459 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+ VT+S + F + T+ N RF T EL +E + A + +E E Sbjct: 460 YYFHVTNSQLA------HVPSHFFRKATLKNSERFGTEELARIEGEMLEAREKSANLEYE 513 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F + + + L +Q +A +D+ + A +A++ + RP+ ++ GRH Sbjct: 514 IFMRIREEAGKYIQRLQALAQTLAAVDVLQSFAAVAEQLHLVRPVFTAERRLQIEKGRHA 573 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + QS +I N L + + L+TGPNM GKST++RQ A+IVIMAQMG Sbjct: 574 VVEKVMGAQS---YIPNSILLDQETN-----IQLITGPNMSGKSTYMRQLAIIVIMAQMG 625 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 SYVPA A + + D +F+R+G+AD+L SG+STFMVEM+E + QA+ +S ++ DE+GR Sbjct: 626 SYVPAQSASLPLFDAIFTRIGAADDLVSGQSTFMVEMMEANRAIRQASERSLILFDELGR 685 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A IE++H + L ATH+HELT L SL+ N + + + + Sbjct: 686 GTATYDGMALAQAIIEHIHHYTGAKTLFATHYHELTALENSLEHLENVHVATLEKDGQVT 745 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK 860 FLHK+ PG AD SYGI V K+AGLP ++ RA IL H +D L E+ TK Sbjct: 746 FLHKIEPGPADKSYGIHVAKIAGLPEKLLERADSILS------HLESQDTGL-GSELPTK 798 Query: 861 --ESKNNLSKNDKLFVE--------KIKCLNLDEMSPLTALKTLYAVK 898 + ++ +++ LF E +++ L++ M+PL + + +K Sbjct: 799 SRQKRSQVAEQMSLFAEGPENPVLTELRDLDIYNMTPLEVMAVVAELK 846 >gi|312898809|ref|ZP_07758197.1| DNA mismatch repair protein MutS [Megasphaera micronuciformis F0359] gi|310619971|gb|EFQ03543.1| DNA mismatch repair protein MutS [Megasphaera micronuciformis F0359] Length = 856 Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust. Identities = 273/834 (32%), Positives = 452/834 (54%), Gaps = 62/834 (7%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY+E+K D L+F+R+GDFYELFFDDAL ASR L +TLT R + +PMCGVP Sbjct: 1 MMKQYLEVKETCADKLLFFRLGDFYELFFDDALTASRELDLTLTGRAGGNKERVPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H+A+ YI++L+ G+++AICEQ+E P + K LV+R ++R++TPGT+T + ++ Sbjct: 61 FHSADTYIERLVHKGYKVAICEQMEDP-----KSVKGLVKREIIRVITPGTVTMEHAVAS 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTG----IFKISTSNHDRLISDIMRIDPREII----- 198 +NY+ AV + D++TG + DRL+ +P E++ Sbjct: 116 KKNNYIAAVGEENGGIQLVLTDVTTGEALWMACGDDETQDRLLDIFALYEPAEVVYTKES 175 Query: 199 --------FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG 250 F+ + L+H + +L+E G++ ++ ADY++ D F Sbjct: 176 AIITSLRRFTTERLNHCAF-TLYELQGDIDYSRTG------------ADYFD---EDAF- 218 Query: 251 SFSQVEKTAA---AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL- 306 Q K AA +SY+K+T + I + + ID ++ +LEI + + Sbjct: 219 ---QAAKEAAYTIGILLSYVKETVKADVFHIASLRPLTTERNMLIDVSSLRHLEITQNVR 275 Query: 307 SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK 366 G R+ +LL +D + T GGRL + + +PL + I R D + +++ I+ + Sbjct: 276 DGRRKGTLLDVLDRTKTAMGGRLLRKWLEAPLLNLHDITERQDGVEDLVRHEIMRQDLGD 335 Query: 367 ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK 426 L D R L+R+ G PKD+ +R+ +R ++ ++ + P R + + Sbjct: 336 TLDKIYDFERILTRIGTGTAGPKDMTALRESLRILPDVKHILSQAGAPILQR--LNECMD 393 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 + + L + ++ R+GG +RDG + LDE RS+ + S + L+ + E T Sbjct: 394 VHSYVYDLLCRAVKEEPAAVIRNGGVIRDGYNEELDEIRSISENSHAFLRDLEEREKEST 453 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 IK LKI + GY+ E++ ++ + ++ +QT+ N R+ T EL D E + Sbjct: 454 GIK-LKIGYTKVFGYYFEISHANTKPIPP------YYVRKQTLVNAERYITPELKDFEVK 506 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 + + +E + F L + ++ ++ +A+ D +LA+ AKE Y RP + Sbjct: 507 VLTSQERLTALEYKLFTQLREEVRGHIAAMQETARAVAVADSLYSLAVCAKENRYVRPAL 566 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 ++ +++GRHPI+E+ K + F+ ND L + ++ ++TGPNM GKST+ Sbjct: 567 NSREVIRIEEGRHPIIEQYNKNEL---FVPNDVTL----NHTDHEVLVITGPNMAGKSTY 619 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ A++++MAQ GS++PA A I VD++F+R+G++D++ +G+STFM EM E + IL Sbjct: 620 MRQTAVLILMAQTGSFIPAESADICPVDRIFTRIGASDDILTGQSTFMTEMKEVSYILKH 679 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT +S +ILDEIGRGT+T DG+SIA A IEY + L ATH+HEL ++ Sbjct: 680 ATCRSLLILDEIGRGTSTFDGMSIAKAVIEYCLKHVHAFTLFATHYHELVSMADESSLLK 739 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 N T+ V + + I FL ++IPG AD SYG+ V +LAGLP ++ RA IL+ E Sbjct: 740 NYTVAVRERGKSIKFLRRIIPGGADRSYGLHVARLAGLPEGLLKRAEVILEELE 793 >gi|227891125|ref|ZP_04008930.1| DNA mismatch repair protein [Lactobacillus salivarius ATCC 11741] gi|227866999|gb|EEJ74420.1| DNA mismatch repair protein [Lactobacillus salivarius ATCC 11741] Length = 876 Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust. Identities = 293/898 (32%), Positives = 480/898 (53%), Gaps = 67/898 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY++IK PD+ +FYR+GDFYE+F+DDA+ S+ L +TLT+R K IPMCG Sbjct: 8 TPMMEQYMQIKKQYPDAFLFYRLGDFYEMFYDDAIKGSQILELTLTQRNKKAVDPIPMCG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A +YI L+ G+++AICEQ+E P +AK +V+R V++LVTPGT+ ++ Sbjct: 68 VPHHAAQNYIDILVDKGYKVAICEQVEDPKQAK-----GMVKREVIQLVTPGTIIDESAG 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEKEL 204 ++NYL A+ ++ A++D+STG K+S N D ++++++ + +EI+ + Sbjct: 123 EAKENNYLTALHFENNQYGFAYVDLSTGELKVSVLNTIDTILNELISLRTKEIV-----V 177 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 + + + N+ + ISE + + + + + VE I Sbjct: 178 DSSVNDEVLNQIKNLKIL---------ISEQNDTEDSSEVSFASQDVENSVEVEVIKHLI 228 Query: 265 SYIKKTQMVNKPTIGYPERE---DIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDY 320 +Y+K TQ K + + +R + L +D A+ NLE+LR L ++ +LL +D Sbjct: 229 TYLKITQ---KRALSHLQRAVHYEPSQYLKMDYHAKRNLELLRNLRTQKKSGTLLWLLDS 285 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGRL + I PL + +I R + + + + +Q+ L + D+ R + Sbjct: 286 TKTAMGGRLLKQWIDRPLINLKEIEARQSMVENLLTHYFERSGLQEELVNVYDLERLAGK 345 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLP-EELRGAVEKLKKLPQSLEKTLSS 437 + G +D+ +R + I + L ND +E+ ++ ++ + +E+ + Sbjct: 346 VAFGSVNGRDLIQLRTSLEHIPQIRYIIQELNNDSTFDEIFDKLDPIEDIADLIEQAIE- 404 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 D+ P DG ++ G LDE K +A L+ K + T I NLKI N Sbjct: 405 ---DEPPISVTDGNLIKPGYSQELDEYVDAMKNGKAWLAELEAKERQATGINNLKIGFNR 461 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IEV+ + S L +DR+ +QT++N RF T EL + E+ I A + A + Sbjct: 462 VFGYYIEVSKGNLSKL-----PEDRYQRKQTLTNAERFITPELKEKESLILGAESKAKEL 516 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP-IIDNSTNFIVKD 616 E + F + + I ++ + + + +A +D+ + A ++++ ++ +P + ++ + +KD Sbjct: 517 EYKIFTGIRDQIKDEIQRIQELAGAVAALDVLQSFATVSEQGHFVKPELTTDNHSLDIKD 576 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 G HP+VEK + +QS +I ND + D + L+TGPNM GKST++RQ AL V++ Sbjct: 577 GWHPVVEKVMGKQS---YIPNDIKMDDDLD-----VLLITGPNMSGKSTYMRQLALTVVI 628 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+G +VPA A + I D++F+R+G+AD+L SG STFMVEM ET L AT S ++ D Sbjct: 629 AQIGCFVPAKSAKMPIFDQIFTRIGAADDLISGESTFMVEMKETNVALMNATRNSLLLFD 688 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGTAT DG+++A A IEY+H + L +TH+HELT L +SL + N + + N Sbjct: 689 EIGRGTATYDGMALAQAIIEYVHNNIHAKTLFSTHYHELTILDESLDKLQNVHVGAIEKN 748 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 +IFLHK+ G AD SYGI V KLAG+P+ ++ RA IL E + Y E Sbjct: 749 GELIFLHKMQEGPADKSYGIHVAKLAGMPDKLLKRADSILNKLESENDFTVESTESYTEE 808 Query: 857 IQTKESKNN-------------------LSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 +E N L N +++IK NL M+P+ + ++ Sbjct: 809 KHIEEKNENETSEIQEEQLSLFQPEAVSLDSNQSKILKEIKNANLMGMTPMDVMNIVF 866 >gi|317498495|ref|ZP_07956789.1| DNA mismatch repair protein MutS [Lachnospiraceae bacterium 5_1_63FAA] gi|316894188|gb|EFV16376.1| DNA mismatch repair protein MutS [Lachnospiraceae bacterium 5_1_63FAA] Length = 741 Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust. Identities = 266/739 (35%), Positives = 431/739 (58%), Gaps = 28/739 (3%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY++IK N D ++FYR+GDFYE+FFDDAL AS+ L ITLT + L + PMCG Sbjct: 8 TPMMQQYMQIKEENKDCILFYRLGDFYEMFFDDALTASKELEITLTGKNCGLEERAPMCG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H + Y+ KL++ G+++ ICEQ+E P +AK +V+R +VR+VTPGT Q L Sbjct: 68 VPYHAVDSYLNKLVEKGYKVGICEQVEDPSQAK-----GIVKREIVRIVTPGTNISQQSL 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISD-IMRIDPREIIFSEKEL 204 +NYLM + + I+++D++TG F+ ++ + + D I + +P EI+ ++ L Sbjct: 123 DDEKNNYLMCIFANDGSYGISFVDVTTGDFRTTSMDSLAKVRDEIFKFEPAEIVCNDAFL 182 Query: 205 -SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ-VEKTAAAA 262 S ++ L + + V + FD +E RI + + ++ G + A A Sbjct: 183 ISGMDFDYLKDKMSIVISSIEPYHFDEEQAEERIKRQFKVGNLEGLGLLDHPMGVIATGA 242 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYS 321 + Y+ +TQ + + + E + + IDS++R NLE+ TL +++ SLL +D + Sbjct: 243 LLGYLHETQKSSLDHLMHIEAYETSEFMIIDSSSRRNLELCETLRDKQKKGSLLWVLDKT 302 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G R+ + PL D KI R D+I I+ +++ L D+ R ++++ Sbjct: 303 KTAMGARMLRNMVEQPLVDKKKIEERYDAITTLTDQTIVREELREYLNPIYDLERLMTKV 362 Query: 382 KIGRGEPKDIAVIRDGIR--SGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 P+D+ + + I + K+ L LR ++ L+ + LE ++ Sbjct: 363 SYKTANPRDMIAFKTSLELLPAIKTVLEECKDPLLSGLREDLDPLEDIHNLLEDSII--- 419 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 ++ P ++GG +++G +D+ + + + K+ + L+ + E+T IKNLKIK N Sbjct: 420 -EEPPLAIKEGGIIKEGFKEDIDKLKRAKTEGKQWLMELEEREREKTGIKNLKIKFNKVF 478 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+++VT+S KDL D +I +QT++N R+TT EL L + I + + +E Sbjct: 479 GYYLDVTNSY-----KDL-VPDHYIRKQTLANSERYTTEELNQLADTILGSEDRLYALEY 532 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E++ ++ + + E + + VIA ID +LA +A+ ++ RP ++ +KDGRH Sbjct: 533 ETYVMIRETLAGEMERISRTANVIAQIDALASLAYVAERNHFVRPKLNVRGTIDIKDGRH 592 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE+ + FI+ND L D ++ ++TGPNM GKST++RQ ALIV+MAQ+ Sbjct: 593 PVVEQVIPNDM---FISNDTYL----DNKKNRVAIITGPNMAGKSTYMRQVALIVLMAQI 645 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPA+ A+IGIVD++F+RVG++D+LASG+STFMVEM E A+IL AT S +ILDEIG Sbjct: 646 GSFVPAAKANIGIVDRIFTRVGASDDLASGQSTFMVEMSEVANILRNATKNSLLILDEIG 705 Query: 740 RGTATLDGLSIAWATIEYL 758 RGT+T DGLSIAWA +EY+ Sbjct: 706 RGTSTFDGLSIAWAVVEYI 724 >gi|297565946|ref|YP_003684918.1| DNA mismatch repair protein MutS [Meiothermus silvanus DSM 9946] gi|296850395|gb|ADH63410.1| DNA mismatch repair protein MutS [Meiothermus silvanus DSM 9946] Length = 848 Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust. Identities = 281/823 (34%), Positives = 453/823 (55%), Gaps = 44/823 (5%) Query: 27 PMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI--PMC 84 P+++QY+E++ PD L+ +++GDFYE F +DA SR LGITLT + KD PM Sbjct: 13 PLLQQYVELRDAYPDYLLLFQVGDFYEAFGEDAERLSRALGITLTHKTS---KDFTTPMA 69 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G+P+ +A+ ++++L+K+G R+ + EQ E P+EA + LVRR V +L+TPGTLT + L Sbjct: 70 GIPIRSADSHLERLLKMGFRVGLAEQTE-PVEAAE----GLVRREVTQLLTPGTLTRENL 124 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFK-ISTSNHDRLISDIMRIDPREIIFSEKE 203 L P D+NYL A+A + + ++++STG F+ + + L ++ R P E++ + + Sbjct: 125 LRP-DANYLAAIA-TGEGYGVVFLEVSTGEFRGVVLYSKSALYDELFRNRPAEVLLAPEL 182 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 ++ ++ F+ + V+ + FD + S + + + G + AA A Sbjct: 183 YANEAFREEFQRRFPLMVSSGS--FDPQGARSALVQQFGMLPS---GLDHPALERAAGAV 237 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEIL------RTLSGSREQSLLKT 317 ++Y + TQ P + R D + + + LE+ L E++L+ Sbjct: 238 LAYARTTQAGALPQVRGFARYDPSAYMQLSETTLRTLEVYDPSPVGSYLPVGEERTLMGV 297 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 + + T G RL + PL D I RLD++ +++ +L ++++L D+ R Sbjct: 298 LGLTRTAPGRRLLKAWLRQPLLDEGPIQARLDAVEALVRDSVLREAVRRLLYRIHDLERL 357 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 +RL GR +D+A + + + L E LR E+L L + +E+ +S+ Sbjct: 358 AARLAAGRSNARDLAALARSLGLLPELQGQLLAC---EPLRVLAERLPLLAEVVER-ISA 413 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 L ++ P +GG ++DG DA+LD R + + IA L+ T I +LK+ +N Sbjct: 414 ALVEEPPLKITEGGLIKDGFDATLDAHRERAEAGRSWIAGLEAAERSRTGIPSLKVGYNQ 473 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 +GY++EVT + + D R + T+ + R+T +L + E I A + Sbjct: 474 VMGYYLEVTRPYYAQVPSDW----RIV--ATLKDRQRYTRPDLREKEREILLAEEAGRKR 527 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E E F+ L + Q+E + A+ V+A +D+ LA +A Y RP FI + G Sbjct: 528 EYEVFQELREELSGQAERVREAALVLAELDVYATLAEVAARHGYTRPRFSPDRLFI-RAG 586 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ L+ + FIAND ++ +L +LTGPNM GKST+LRQ ALI ++ Sbjct: 587 RHPVVERHLEGR----FIANDLEMGP-----EARLLILTGPNMSGKSTYLRQTALIALLG 637 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+GS+VPA A + I D++++R+G+AD++A GRSTFMVEM E A IL AT +S V+LDE Sbjct: 638 QIGSFVPAEEAVLPIFDRIYTRIGAADDIAGGRSTFMVEMEELAQILQGATARSLVLLDE 697 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGT+T DGLS+AWA EYLH+ + L ATH+ ELT L ++L N + + Sbjct: 698 IGRGTSTYDGLSLAWAASEYLHDRIKALTLFATHYFELTALPETLPAARNYHVAAREEVG 757 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 G++F H+V+PG A SYG++V +LAGLP V+ RA +L E Sbjct: 758 GLVFYHQVLPGPASKSYGLEVARLAGLPPEVLGRAGQLLAGLE 800 >gi|15838317|ref|NP_299005.1| DNA mismatch repair protein MutS [Xylella fastidiosa 9a5c] gi|9106782|gb|AAF84525.1|AE003995_7 mismatch repair protein [Xylella fastidiosa 9a5c] Length = 903 Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust. Identities = 304/911 (33%), Positives = 489/911 (53%), Gaps = 52/911 (5%) Query: 7 SPQKLYSEQIDLEE------NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDAL 60 +P+ + + ID+ E + TP+M+QY K+ PD L+F+RMGDFYELF DA Sbjct: 25 TPEGRFLQNIDMREKPEGGKGMAEHTPLMKQYFAAKAEYPDLLLFFRMGDFYELFHQDAR 84 Query: 61 LASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR 120 A+R L ITLT+RG G IPM GVPVH Y+ +LI +G +AICEQI P AK Sbjct: 85 KAARLLDITLTQRGSSGGAPIPMAGVPVHAYEGYLARLIALGESVAICEQIGDPGLAK-- 142 Query: 121 GNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTS 180 LV R VVR+VTPGT+T++ LL LMA++R + + +AW D++ G F ++ Sbjct: 143 ---GLVERKVVRIVTPGTITDEVLLEERRDTLLMALSRSKNCYGLAWADLAGGRFLVNEV 199 Query: 181 NHDR-LISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIAD 239 N + L +++ R++P E++ +++ + EY N +P FD ++ Sbjct: 200 NSEEALEAELARLEPAELLLPDED-AWPEYLQQR----NGVRRRPPWLFDADSGRRKLLA 254 Query: 240 YYNITTVDTFGSFSQVEKTAAAAAIS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARS 298 ++ + + FG + + TAAA A+ YI++TQ P + E + + +++A R Sbjct: 255 FFKLHDLSGFGIENNPQATAAAGALLGYIEETQKQRLPHLTSITMETVGEAITMNAATRR 314 Query: 299 NLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP 358 +LE+ + G +LL +D ++T GGRL + PL + R ++ I Sbjct: 315 HLELDTRVDGESRHTLLGVLDSTVTPMGGRLLRRWLHRPLRLREVVRQRHAAVGSMIDRD 374 Query: 359 ILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELR 418 L N + + + D+ R L+R+ + P+DI+ +RD + + L +D P LR Sbjct: 375 -LDNKLMETFRRLGDMERILTRVALRSARPRDISTLRDSLSLLPRLRELLNASDSPR-LR 432 Query: 419 GAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASL 478 +L + S L +++ P DGG + D LDE R L + + + + L Sbjct: 433 VLYAELGE-HDSTASLLVKAVAEQPPLKLTDGGVIASEYDVELDELRKLSNNADQFLIDL 491 Query: 479 QLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTL 538 + + E + I LK+ +N GY+IE++ A ++ + RQT++N R+ T Sbjct: 492 ETRERESSGISTLKVGYNRVHGYYIEISKGQAD------KAPVHYTRRQTLTNAERYITE 545 Query: 539 ELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKE 598 EL E+++ +A + AL+ E +E L + + Q E L + ++ +D+ + A A+ Sbjct: 546 ELKAFEDKVLSARDRALVREKLLYEQLLDTVGAQLEPLKRCAAALSELDVLVCFAERAQT 605 Query: 599 QNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGP 658 ++ RP +++++ ++ GRHP+VE +Q+ F ND DL ++ ++TGP Sbjct: 606 LDWVRPELEHTSCLHIEGGRHPVVEAVREQR----FEPNDLDLHPER-----RMLVITGP 656 Query: 659 NMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMI 718 NMGGKST++RQNALIV++A +GSYVPAS A IG +D++ +R+G+ D+LA G+STFM+EM Sbjct: 657 NMGGKSTYMRQNALIVLLAYIGSYVPASRALIGPIDRIMTRIGAGDDLARGQSTFMLEMT 716 Query: 719 ETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDL 778 ET+ IL+ AT QS V++DEIGRGT+T DGL++A A +L NRC L ATH+ ELT L Sbjct: 717 ETSYILHHATAQSLVLMDEIGRGTSTYDGLALADAVARHLAHINRCYTLFATHYFELTAL 776 Query: 779 SK-----SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAY 833 + L N + +E ++F+H V G A+ S+G+QV LAGLP ++ A Sbjct: 777 ADETYEGGLSGIANVHFDAVEHSERLVFMHTVKDGPANRSFGLQVAALAGLPAAAVAHAR 836 Query: 834 DILKTFEKLYHHNQKDMRLYYPEI-----QTKESKNNLSKNDKLFVEKIKCLNLDEMSPL 888 L E Q+ + EI + + + E + L+ DE++P Sbjct: 837 RRLAELE------QRGRESHVSEITPLALDAPQQCSLFASAPSAAQEALVALHPDELTPK 890 Query: 889 TALKTLYAVKA 899 AL+ LY +KA Sbjct: 891 QALEALYRLKA 901 >gi|227533756|ref|ZP_03963805.1| DNA mismatch repair protein mutS [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188592|gb|EEI68659.1| DNA mismatch repair protein mutS [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|327386432|gb|AEA57906.1| DNA mismatch repair protein mutS [Lactobacillus casei BD-II] Length = 860 Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust. Identities = 297/828 (35%), Positives = 456/828 (55%), Gaps = 53/828 (6%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S TPMM+QY EIK+ PD+ +FYR+GDFYELF DDA+ ++ L +TLT R K IPM Sbjct: 9 SETPMMQQYNEIKAQYPDAFLFYRIGDFYELFNDDAIKGAQLLELTLTARNKSADDPIPM 68 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H Y+ LI G+++AICEQ+E P +A +V+R V++LVTPGT + + Sbjct: 69 AGVPHHAVQSYVDILIDHGYKVAICEQMEDPKKAV-----GMVKRAVIQLVTPGTNVDIK 123 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEK 202 + +NY+ AV +A A+ D+STG K++ + L +++ + +EI+ E Sbjct: 124 AGAAKSNNYITAVMPHAAGYAFAYADVSTGELKVTDLKSKFALQNELSALATKEIVVPE- 182 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 EL+ + L + ++V QP+ SE GS+ E T A Sbjct: 183 ELTDDDAGMLKQGERLLSV-QPDA---EPTSE---------------GSYVSQELTDPAE 223 Query: 263 A------ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILR-TLSGSREQSLL 315 A ++Y+ TQ + I + L +D ARSNL+IL+ + +G + +LL Sbjct: 224 AAVVQMLMAYLLNTQKRSLAHIQKAVAYQPSAYLEMDQDARSNLDILQNSRTGRKGDTLL 283 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T GGRL + + PL D I+ R + + + + + +Q+ L D+ Sbjct: 284 SLLDSTKTAMGGRLLKQWLDRPLLDIDAISVRQNQVQDLLDHFFERSELQERLTKVYDLE 343 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEK 433 R R+ G +D+ ++ + I ++ K D + LR ++ + + + + Sbjct: 344 RLAGRVAFGTVNGRDLIQLQTSLDQIPAIQDVLGKLDDGSFKALRSKMDPVSDVAGLIRR 403 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + + P DGG + G + LD R SK+ IA L+ + T I LKI Sbjct: 404 AIEP----EPPISVTDGGLILRGYNQKLDSYRDAMKNSKQWIAELEASERKATGIHTLKI 459 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 ++N GYFIEVT S+ D + R+ +QT++N RF T EL + E I A S Sbjct: 460 RYNKVFGYFIEVTKSNL-----DKIPEGRYERKQTLTNAERFITPELKEKETLILEAQES 514 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + +E + F+ + + + Q + L + I+ +D+ + A +A+ +Y RP + T+ I Sbjct: 515 STALEYDLFQDIRDKVKAQIKRLQALAAQISSLDVLQSFATVAENSHYVRPTMHAGTHDI 574 Query: 614 -VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 VK GRHP+VE L + S +I ND ++ D + L+TGPNM GKST++RQ AL Sbjct: 575 NVKGGRHPVVEHVLGRDS---YIPNDVIMNHDTD-----MLLITGPNMSGKSTYMRQLAL 626 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 IVIMAQ GS+VPA A + I D++F+R+G+AD+LA+G STFMVEM+E + L+ AT S Sbjct: 627 IVIMAQAGSFVPADVADLPIFDQIFTRIGAADDLANGESTFMVEMLEANAALSHATASSL 686 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 ++ DEIGRGTAT DG+++A A IE+LH+ + L +TH+HELT LS SL + N + Sbjct: 687 ILFDEIGRGTATYDGMALAQAIIEFLHDHVHAKTLFSTHYHELTSLSDSLAKLKNVHVGA 746 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + + ++FLHK++PG AD SYGI V KLAGLP +++RA ILK E Sbjct: 747 VEEHGNLVFLHKMMPGPADKSYGIHVAKLAGLPADLLARADTILKQLE 794 >gi|326407804|gb|ADZ64875.1| DNA mismatch repair protein MutS [Lactococcus lactis subsp. lactis CV56] Length = 840 Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust. Identities = 290/884 (32%), Positives = 488/884 (55%), Gaps = 63/884 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L +TLT R K+ IPM G Sbjct: 6 SPGMQQYLDIKQDYPDAFLLFRMGDFYELFYDDAVNAAQILELTLTSRNKNSENPIPMAG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A YI KL+ +G+++A+ EQ+E P +A +V+R V +++TPGT + Sbjct: 66 VPHHAAAEYIDKLVDLGYKVAVAEQMEDPKKAV-----GIVKRAVTQVITPGTTIDTA-- 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204 + D+N+L+A+ +A++++D+STG FK++ S ++ +I + REI+ + L Sbjct: 119 NSVDNNFLVAIDFKDKHYALSYMDLSTGEFKVTELSEFSAVVGEIASLKAREIV-AGFTL 177 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 ++ K +FE N+ +++ I E+ + D +T + E A+ + Sbjct: 178 DESQLK-VFERQMNLLISE-----QIEIPENLLIDLSGLTAL---------ENQVASKLL 222 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT 323 +Y+K+TQM + + E +I+ L +D A +S+LE+ +++ +L +D + T Sbjct: 223 AYVKETQMRDLSHLQEVEHYEIKDFLQMDFATKSSLELTANKRENKKHGTLYWLLDETKT 282 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G R+ I PL ++ I R++ + F+ + + + + LK D+ R SR+ Sbjct: 283 AMGTRMLRSWIDRPLVSNSAIQKRMEIVQIFLDHFFERSDLIEALKGVYDLERLASRVSF 342 Query: 384 GRGEPKDIAVIRDGIRSGINILNLF-LKNDLP-EELRGAVEKLKKLPQSLEKTLSSMLSD 441 G+ P D + + + + I N+ + N+ P EEL+ +L ++P+ L ++S +S+ Sbjct: 343 GKAVPVDFLQLANSLSNVPAIKNILGMLNEAPLEELKS---QLDEIPE-LSGLINSAISE 398 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + +GG ++ G +A LD+ R + IA L+ +T I L+I +N GY Sbjct: 399 NASRTITEGGIIKKGYNAQLDKYREALENGTSWIAKLEADEKAKTGISTLRIDYNRKDGY 458 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 + +T S + + + F + T+ N RF + EL ++E + A + +E + Sbjct: 459 YFHITQSQLNSVP------EHFYRKATLKNSERFGSQELTEIEEIMLEAREKSSSLEYDL 512 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI-VKDGRHP 620 F L + L ++ IA ID +L+++A++Q Y RP + + + + +K GRH Sbjct: 513 FMDLRTETEQYIGRLQALAKTIAEIDCLQSLSVVAEKQGYIRPTLTDGSRIVEIKGGRHA 572 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE + Q ++ ND +L D + L+TGPNM GKST++RQ AL VIMAQ+G Sbjct: 573 VVEAVMGAQE---YVPNDIELPEQTD-----IQLITGPNMSGKSTYMRQFALTVIMAQIG 624 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA A++ I D +F+R+G++DNL SG STFMVEM E + +A+++S +I DE+GR Sbjct: 625 SFVPAETANLPIFDAIFTRIGASDNLISGESTFMVEMSEANHAIQKASSRSLIIFDELGR 684 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A IEY+H+ + L ATH+HELTDL ++L N + + N + Sbjct: 685 GTATYDGMALAQAIIEYVHDHIGAKTLFATHYHELTDLDEALVHLDNVHVATLEQNGNVT 744 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE------KLYHHNQKDMRLYY 854 FLHK+ G AD SYGI V K+AGLP ++ RA IL+ E K Q+ + L+ Sbjct: 745 FLHKITEGPADKSYGIHVAKIAGLPQPLLERADLILQKLENKPLPAKKVADEQEQLSLF- 803 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + ++N +EKIK N+D M+ AL L+ +K Sbjct: 804 ----------DFTENSSEIIEKIKRQNVDNMTAREALNFLWELK 837 >gi|191639175|ref|YP_001988341.1| DNA mismatch repair protein MutS [Lactobacillus casei BL23] gi|238693005|sp|B3W9W4|MUTS_LACCB RecName: Full=DNA mismatch repair protein mutS gi|190713477|emb|CAQ67483.1| DNA mismatch repair protein mutS [Lactobacillus casei BL23] gi|327383247|gb|AEA54723.1| DNA mismatch repair protein mutS [Lactobacillus casei LC2W] Length = 857 Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust. Identities = 297/828 (35%), Positives = 456/828 (55%), Gaps = 53/828 (6%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S TPMM+QY EIK+ PD+ +FYR+GDFYELF DDA+ ++ L +TLT R K IPM Sbjct: 6 SETPMMQQYNEIKAQYPDAFLFYRIGDFYELFNDDAIKGAQLLELTLTARNKSADDPIPM 65 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H Y+ LI G+++AICEQ+E P +A +V+R V++LVTPGT + + Sbjct: 66 AGVPHHAVQSYVDILIDHGYKVAICEQMEDPKKAV-----GMVKRAVIQLVTPGTNVDIK 120 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEK 202 + +NY+ AV +A A+ D+STG K++ + L +++ + +EI+ E Sbjct: 121 AGAAKSNNYITAVMPHAAGYAFAYADVSTGELKVTDLKSKFALQNELSALATKEIVVPE- 179 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 EL+ + L + ++V QP+ SE GS+ E T A Sbjct: 180 ELTDDDAGMLKQGERLLSV-QPDA---EPTSE---------------GSYVSQELTDPAE 220 Query: 263 A------ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILR-TLSGSREQSLL 315 A ++Y+ TQ + I + L +D ARSNL+IL+ + +G + +LL Sbjct: 221 AAVVQMLMAYLLNTQKRSLAHIQKAVAYQPSAYLEMDQDARSNLDILQNSRTGRKGDTLL 280 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T GGRL + + PL D I+ R + + + + + +Q+ L D+ Sbjct: 281 SLLDSTKTAMGGRLLKQWLDRPLLDIDAISVRQNQVQDLLDHFFERSELQERLTKVYDLE 340 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEK 433 R R+ G +D+ ++ + I ++ K D + LR ++ + + + + Sbjct: 341 RLAGRVAFGTVNGRDLIQLQTSLDQIPAIQDVLGKLDDGSFKALRSKMDPVSDVAGLIRR 400 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + + P DGG + G + LD R SK+ IA L+ + T I LKI Sbjct: 401 AIEP----EPPISVTDGGLILRGYNQKLDSYRDAMKNSKQWIAELEASERKATGIHTLKI 456 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 ++N GYFIEVT S+ D + R+ +QT++N RF T EL + E I A S Sbjct: 457 RYNKVFGYFIEVTKSNL-----DKIPEGRYERKQTLTNAERFITPELKEKETLILEAQES 511 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + +E + F+ + + + Q + L + I+ +D+ + A +A+ +Y RP + T+ I Sbjct: 512 STALEYDLFQDIRDKVKAQIKRLQALAAQISSLDVLQSFATVAENSHYVRPTMHAGTHDI 571 Query: 614 -VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 VK GRHP+VE L + S +I ND ++ D + L+TGPNM GKST++RQ AL Sbjct: 572 NVKGGRHPVVEHVLGRDS---YIPNDVIMNHDTD-----MLLITGPNMSGKSTYMRQLAL 623 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 IVIMAQ GS+VPA A + I D++F+R+G+AD+LA+G STFMVEM+E + L+ AT S Sbjct: 624 IVIMAQAGSFVPADVADLPIFDQIFTRIGAADDLANGESTFMVEMLEANAALSHATASSL 683 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 ++ DEIGRGTAT DG+++A A IE+LH+ + L +TH+HELT LS SL + N + Sbjct: 684 ILFDEIGRGTATYDGMALAQAIIEFLHDHVHAKTLFSTHYHELTSLSDSLAKLKNVHVGA 743 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + + ++FLHK++PG AD SYGI V KLAGLP +++RA ILK E Sbjct: 744 VEEHGNLVFLHKMMPGPADKSYGIHVAKLAGLPADLLARADTILKQLE 791 >gi|123969386|ref|YP_001010244.1| DNA mismatch repair protein MutS [Prochlorococcus marinus str. AS9601] gi|189083174|sp|A2BTM6|MUTS_PROMS RecName: Full=DNA mismatch repair protein mutS gi|123199496|gb|ABM71137.1| putative DNA mismatch repair protein [Prochlorococcus marinus str. AS9601] Length = 913 Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust. Identities = 303/860 (35%), Positives = 468/860 (54%), Gaps = 85/860 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TP+M+ Y+ +K N D L+ YR+GDF+E FF+DA+L S L ITLT + GK +GK IPM Sbjct: 86 TPVMKHYVTLKEENKDRLLLYRLGDFFECFFEDAVLISNLLEITLTSKDAGKEIGK-IPM 144 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSL-VRRNVVRLVTPGTLTED 142 GVP H Y LIK + + IC+Q+E K GN ++R + R++TPGT+ E+ Sbjct: 145 AGVPHHAMERYCADLIKKNYSVVICDQLE-----KSSGNYGTPIKRGITRIITPGTVIEE 199 Query: 143 QLLSPTDSNYLMAV------ARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPR 195 +L +N++ A+ + EW I+ D+STG + + + +L +I+++D Sbjct: 200 GMLIAKKNNWISAIYLSEENSDESYEWGISKADVSTGELITLEGQSLSKLFDEIIKLDSS 259 Query: 196 EIIFSE--------KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVD 247 EII K S Y ET N + + N I +Y+ I ++ Sbjct: 260 EIIVGSNTARDLLIKGNSQITYTVSQET--NFGINEANYL---------IKNYFQIANLE 308 Query: 248 TFGSFSQVEKTAAAAAI-SYIKKTQMVN-------KPTIGYPEREDIQSTLFIDSAARSN 299 G + T + + +Y++K N K ++ +P+ + + L ID + N Sbjct: 309 GIGLKNLNNATRSLGGLLNYLEKINPSNLDKDSSLKISLDFPQIQYGHNKLIIDYQTQKN 368 Query: 300 LEILRTLSGSREQ----SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFI 355 LEI T RE SLL +ID + T G R I SPL + +I R + I F+ Sbjct: 369 LEIKNT---QRENNYVGSLLWSIDRTYTCMGARCLRRWIDSPLLNVNEIYKRQNIITNFL 425 Query: 356 QNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSG---INILNLFLKND 412 ++ L Q +L++ D+ R R G P+D+ I +G++ +I+ LF K D Sbjct: 426 ESKKLRIDTQNLLRAMGDLERLAGRACAGHASPRDLIAIAEGLKKLPRLKSIIELF-KYD 484 Query: 413 LPEELRGAVEKLKKLPQSL---EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRD 469 LP+ ++LK + + L T+S L ++ P +GG + DG D LD R+L D Sbjct: 485 LPD----WTDQLKNIDEGLLELADTISFKLVENPPLNISEGGMIHDGVDNILDGLRNLMD 540 Query: 470 QSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTM 529 + + K + +KI NLKI+ + N GY+I + S ++ + +I RQT+ Sbjct: 541 DYSEWLNKEESKERKISKISNLKIQFHKNFGYYISINKSKVNL------APQHWIKRQTL 594 Query: 530 SNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDIS 589 +N R+ T E+ + EN+I + A E E F L N + E+++ + + ++ IA +D Sbjct: 595 TNEERYITSEIKNKENKIFQIKSRASSKEYEIFCELRNIVAEKTKQIRSIAKSIASLDAL 654 Query: 590 IALAILAKEQNYCRP--------IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDL 641 + L+I + E N+ +P + NST I GR+PIVE+ L S K F+AND Sbjct: 655 LGLSITSVENNFIKPSLIPINDSMTKNSTKIIA--GRNPIVEQLL---SDKKFVANDISF 709 Query: 642 SCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVG 701 +++ KL +LTGPN GKS F+RQ LI I+ Q+GS+VPA+ A I I D++F+R+G Sbjct: 710 -----EDNQKLIILTGPNASGKSCFIRQLGLIQILTQIGSFVPANNAEIKIADRIFTRIG 764 Query: 702 SADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHET 761 + D+ +SG+STFMVEM ETASILNQAT+ S V+LDEIGRGT+T DGLSIAW+ EYL + Sbjct: 765 AVDDQSSGQSTFMVEMSETASILNQATSSSLVLLDEIGRGTSTFDGLSIAWSVSEYLAKK 824 Query: 762 NRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKL 821 +C + ATH+HEL L + K N + V +N+ +IF H+++ G ++ SYGI+ KL Sbjct: 825 IQCNTIFATHYHELNYLKNTNKNIQNFQVLVEQNNDQLIFSHRIVKGGSNKSYGIEAAKL 884 Query: 822 AGLPNTVISRAYDILKTFEK 841 AG+P VI +A +L + E+ Sbjct: 885 AGVPKEVIEKAKSVLNSLEE 904 >gi|323350709|ref|ZP_08086370.1| DNA mismatch repair protein HexA [Streptococcus sanguinis VMC66] gi|322123129|gb|EFX94820.1| DNA mismatch repair protein HexA [Streptococcus sanguinis VMC66] Length = 849 Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust. Identities = 280/820 (34%), Positives = 446/820 (54%), Gaps = 46/820 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYPDAFLLFRMGDFYELFYDDAVNAAQILEISLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI L++ G+++AI EQ+E P EAK +V+R VV+++TPGT+ + Sbjct: 67 VPYHSAQQYIDVLVESGYKVAIAEQMEDPKEAK-----GVVKREVVQVITPGTVVDS--- 118 Query: 146 SPTDS--NYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLI-SDIMRIDPREIIFSEK 202 S DS N+L+A+ + +A++D+ TG F++++ L+ +I + RE++ Sbjct: 119 SKPDSANNFLVALDYSDGLYGLAYMDLVTGEFQVTSLEDFALVCGEIRNLKAREVVLG-- 176 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS-FSQVEKTAAA 261 +L E V Q N+ S ++ + D V G S +E+ AA Sbjct: 177 -------YALPEAEEQVLAGQMNLLL--SYVQTALDD------VQLLGEELSPMERQAAG 221 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 + Y+ +TQM + + +I+ L +D A +++L++ SG + SL +D Sbjct: 222 KLLEYVHRTQMRELSHLKKAQHYEIKDFLQMDYATKASLDLTENARSGKKHGSLYWLMDE 281 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGR+ I PL D +I+ R + + F+ + + + + LK D+ R SR Sbjct: 282 TKTAMGGRMLRSWIQRPLIDEARISQRQNVVEVFLDHFFERSDLTESLKGVYDIERLASR 341 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + G+ PKD+ + + + + L+ L +E L + + L +SS +S Sbjct: 342 VSFGKTNPKDLLQLAATL-GNVPQIKAILQGIGSPHLARLIEGLDPISE-LAGLISSAIS 399 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D P +G ++ G D +LD+ R + + IA L++K + I NLKI +N G Sbjct: 400 PDAPHIITEGNIIQTGFDETLDQYRLVLREGTGWIAELEVKERANSGISNLKIDYNKKDG 459 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+ VT+S + F + T+ N RF T EL +E + A + +E E Sbjct: 460 YYFHVTNSQLA------HVPSHFFRKATLKNSERFGTEELARIEGEMLEAREKSANLEYE 513 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F + + + L +Q +A +D+ + A +A++ + RP+ ++ GRH Sbjct: 514 IFMRIREEAGKYIQRLQALAQTLAAVDVLQSFAAVAEQLHLVRPVFTAERCLQIEKGRHA 573 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + QS +I N L D + L+TGPNM GKST++RQ A+IVIMAQMG Sbjct: 574 VVEKVMGAQS---YIPNSILLDQETD-----IQLITGPNMSGKSTYMRQLAIIVIMAQMG 625 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 SYVPA A + + D +F+R+G+AD+L SG+STFMVEM+E + QA+ +S ++ DE+GR Sbjct: 626 SYVPAQSASLPLFDAIFTRIGAADDLVSGQSTFMVEMMEANRAIRQASERSLILFDELGR 685 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A IE++H + L ATH+HELT L SL+ N + + + + Sbjct: 686 GTATYDGMALAQAIIEHIHHYTGAKTLFATHYHELTALENSLEHLENVHVATLEKDGQVT 745 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 FLHK+ PG AD SYGI V K+AGLP ++ RA +IL E Sbjct: 746 FLHKIEPGPADKSYGIHVAKIAGLPEKLLERADNILSHLE 785 >gi|301301372|ref|ZP_07207514.1| DNA mismatch repair protein MutS [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851032|gb|EFK78774.1| DNA mismatch repair protein MutS [Lactobacillus salivarius ACS-116-V-Col5a] Length = 876 Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust. Identities = 300/908 (33%), Positives = 479/908 (52%), Gaps = 87/908 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY++IK PD+ +FYR+GDFYE+F+DDA+ S+ L +TLT+R K IPMCG Sbjct: 8 TPMMEQYMQIKKQYPDAFLFYRLGDFYEMFYDDAIKGSQILELTLTQRNKKAVDPIPMCG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A +YI L+ G+++AICEQ+E P +AK +V+R V++LVTPGT+ ++ Sbjct: 68 VPHHAAQNYIDILVDKGYKVAICEQVEDPKQAK-----GMVKREVIQLVTPGTIIDESAG 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEKEL 204 ++NYL A+ ++ A++D+STG K+S N D ++++++ + +EI+ + Sbjct: 123 EAKENNYLTALHFENDQYGFAYVDLSTGELKVSVLNTIDTILNELISLRTKEIV-----V 177 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 + + + N+ + ISE + + + + + VE I Sbjct: 178 DSSVNDDVLNQIKNLKIL---------ISEQNDTEDSSEVSFASQDVENSVEVEVIKHLI 228 Query: 265 SYIKKTQMVNKPTIGYPERE---DIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDY 320 +Y+K TQ K + + +R + L +D A+ NLE+LR L ++ +LL +D Sbjct: 229 TYLKITQ---KRALSHLQRAVHYEPSQYLKMDYHAKRNLELLRNLRTQKKSGTLLWLLDS 285 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGRL + I PL + +I R + + + + +Q+ L + D+ R + Sbjct: 286 TKTAMGGRLLKQWIDRPLINLKEIEARQSMVENLLTHYFERSGLQEELVNVYDLERLAGK 345 Query: 381 LKIGRGEPKDIAVIRDG------IRSGINILN-------LFLKNDLPEELRGAVEKLKKL 427 + G +D+ +R IR I LN +F K D E++ +E Sbjct: 346 VAFGSVNGRDLIQLRTSLEHIPQIRYIIQELNDDGTFDEIFDKLDPIEDIADLIE----- 400 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 Q++E D+ P DG ++ G LDE K +A L+ K + T Sbjct: 401 -QAIE--------DEPPISVTDGNLIKPGYSQELDEYVDAMKNGKAWLAELEAKERQATG 451 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 I NLKI N GY+IEV+ + S L +DR+ +QT++N RF T EL + E+ I Sbjct: 452 INNLKIGFNRVFGYYIEVSKGNLSKL-----PEDRYQRKQTLTNAERFITPELKEKESLI 506 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP-II 606 A + A +E + F + + I ++ + + + +A +D+ + A ++++ ++ +P + Sbjct: 507 LGAESKAKELEYKIFTGIRDQIKDEIQRIQELAGAVAALDVLQSFATVSEQGHFVKPELT 566 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 ++ + +KDG HP+VEK + +QS +I ND + D + L+TGPNM GKST+ Sbjct: 567 TDNHSLDIKDGWHPVVEKVMGKQS---YIPNDIKMDDDLD-----VLLITGPNMSGKSTY 618 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ AL V++AQ+G +VPA A + I D++F+R+G+AD+L SG STFMVEM ET L Sbjct: 619 MRQLALTVVIAQIGCFVPAKSAKMPIFDQIFTRIGAADDLISGESTFMVEMKETNVALMN 678 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT S ++ DEIGRGTAT DG+++A A IEY+H + L +TH+HELT L +SL + Sbjct: 679 ATRNSLLLFDEIGRGTATYDGMALAQAIIEYVHNNIHAKTLFSTHYHELTILDESLDKLQ 738 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN 846 N + + N +IFLHK+ G AD SYGI V KLAG+P+ ++ RA IL E Sbjct: 739 NVHVGAIEKNGELIFLHKMQEGPADKSYGIHVAKLAGMPDKLLKRADSILNKLESENDFT 798 Query: 847 QKDMRLYYPEIQTKESKNN-------------------LSKNDKLFVEKIKCLNLDEMSP 887 Y E +E N L N ++KIK NL M+P Sbjct: 799 VDSTESYAEEKHIEEKNENETSEIQEEQLSLFQPEAVSLDSNQSKILKKIKNANLMGMTP 858 Query: 888 LTALKTLY 895 + + ++ Sbjct: 859 MDVMNIVF 866 >gi|257454099|ref|ZP_05619373.1| DNA mismatch repair protein MutS [Enhydrobacter aerosaccus SK60] gi|257448577|gb|EEV23546.1| DNA mismatch repair protein MutS [Enhydrobacter aerosaccus SK60] Length = 967 Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust. Identities = 310/981 (31%), Positives = 499/981 (50%), Gaps = 124/981 (12%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK-H 76 + NL TPMM+QY+ +K+ P +LV YRMGDFYELFFDDA LA+ LGITLT+RGK Sbjct: 5 MPHNLDDHTPMMQQYLTLKADYPHALVLYRMGDFYELFFDDAKLAADILGITLTRRGKDK 64 Query: 77 LGKDIPMCGVPVHTANHYIQKLIKIGHRI---------------------------AICE 109 G IPM GVP H+A+ YI +LI G + +I + Sbjct: 65 QGNTIPMAGVPFHSADGYIARLINAGQTVVVCEQVEEEKTEDEPEENIVAKDTAAKSIAK 124 Query: 110 QIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAV--ARIRTEWAIAW 167 + K ++ R VVR +T GTLT+D L++ + ++A+ A+ + +A Sbjct: 125 STATKTSKTKANAAKIMERKVVRTLTAGTLTDDNLITQGQTPTVVAISFAKQQMSVGLAQ 184 Query: 168 IDISTGIFKISTSNHD-------RLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVA 220 +D++ G +++ N D L + + R DP E++ E +LS A L + L + Sbjct: 185 LDLAQGQIRVTELNCDSHTALQSELANALARFDPSEVLIDE-QLSEAWQHFLQDCLSANS 243 Query: 221 --------VAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ-VEKTAAAAAISYIKKTQ 271 ++QP+ +F + + + + ++TT+ FG + + ++A+ + Y K+TQ Sbjct: 244 PTASLPPILSQPHSYFLPNNALEHLTQHLSVTTLAGFGIEQKPLAISSASVVLHYGKQTQ 303 Query: 272 MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFA 331 + I + E L +D+ ++ NLEI + + S SLL ID+ T G R Sbjct: 304 QADLRHICSLQLEHNGDFLQLDTISQQNLEIFKPVLASGI-SLLSVIDHCQTPMGKRALV 362 Query: 332 ERIASPLTDSTKINTRLDSINFFIQNPIL-INPIQKILKSSPDVPRSLSRLKIGRGEPKD 390 + PL + T IN RLD++ +Q PI +++ L D+ R R+ +G +P D Sbjct: 363 HHLRRPLRNVTLINRRLDAVEQLMQLPIAAFELLKQTLSEISDIERIGGRIGLGSAKPTD 422 Query: 391 IAVIRDGIRSGI-------------NILNLFLKNDLPEELRGAVEKLKKLPQ-------- 429 + +R + + NI L + L L K+LP Sbjct: 423 LLKLRLSLAQALALSKQLQQYFDFNNITTLTAETPLLAMLS------KQLPDLALTDSFA 476 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 ++ L + D+ P RDGG ++ G D LDE ++L ++ + +L ++ ++ + Sbjct: 477 NIHALLEQAIVDEPPAHIRDGGMIKKGYDPQLDEWKNLHGNIEQTLEALAVQERQKNNLP 536 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LK+ N G++ E+++ A + + F RQT+ N RF T L +E + Sbjct: 537 MLKVGFNKVSGFYFELSALQAK------NAPEYFTRRQTLKNAERFITPALKTIEESYLS 590 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN-------YC 602 A AL +E +E L + Q + ++ I +D+ L + QN +C Sbjct: 591 AQGQALTLEKRIYENLLGQLKSQLGDVQRLAKAIGYLDVLANWVSLTRLQNRSHHSKNWC 650 Query: 603 RPII---DNSTNFIVKDGRHPIVEKTLKQQ------SSKPFIANDCDLSCPNDKNSGKLW 653 RP+ D+S + ++ GRH +VE ++Q S PF+ANDC + +L Sbjct: 651 RPLFNTTDDSASLNIQGGRHIVVEAGQQRQTHHQMASLDPFVANDCVMGTATQLE--RLM 708 Query: 654 LLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTF 713 L+TGPNMGGKST++RQ ALIV++A G+YVPA +G ++++F+R+GSAD+LASG+STF Sbjct: 709 LITGPNMGGKSTYMRQTALIVLLACCGAYVPAQSVTLGRIERIFTRIGSADDLASGKSTF 768 Query: 714 MVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFH 773 MVEMIETA+I+NQA S V++DE+GRGT+T DGL+IA A + YL E C L ATH+ Sbjct: 769 MVEMIETANIMNQANANSLVLMDEVGRGTSTQDGLAIAHACVNYLAEKIGCLTLFATHYF 828 Query: 774 ELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAY 833 ELT+L++ + N L + N ++ LHK+ PG S+G+ V K+AGLP ++++A Sbjct: 829 ELTELAERHPKMFNQHLVTQEINGQLLLLHKIAPGATHRSFGLHVAKMAGLPQALLAQA- 887 Query: 834 DILKTFEKLYHHNQ---------------KDMRLYYPEIQTKESKNNLSKNDKL-FVEKI 877 + Y NQ KD R ++Q+ + K D+ +++ Sbjct: 888 -------QYYLDNQSEQKNLPNNPLPYPPKDERQIGLDLQSAAADYRTLKADEYKLSQQL 940 Query: 878 KCLNLDEMSPLTALKTLYAVK 898 LN DE++P AL+ +Y++K Sbjct: 941 NALNPDELTPKQALEFIYSLK 961 >gi|239630091|ref|ZP_04673122.1| DNA mismatch repair protein mutS [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239527703|gb|EEQ66704.1| DNA mismatch repair protein mutS [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 860 Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust. Identities = 298/828 (35%), Positives = 457/828 (55%), Gaps = 53/828 (6%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S TPMM+QY EIK+ PD+ +FYR+GDFYELF DDA+ ++ L +TLT R K IPM Sbjct: 9 SETPMMQQYNEIKAQYPDAFLFYRIGDFYELFNDDAIKGAQLLELTLTARNKSADDPIPM 68 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H Y+ LI G+++AICEQ+E P +A +V+R V++LVTPGT + + Sbjct: 69 AGVPHHAVQSYVDILIDHGYKVAICEQMEDPKKAV-----GMVKRAVIQLVTPGTNVDIK 123 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEK 202 + +NY+ AV +A A+ D+STG K++ + L +++ + +EI+ E Sbjct: 124 AGAAKSNNYITAVMPHAAGYAFAYADVSTGELKVTDLKSKFALQNELSALATKEIVVPE- 182 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSF-SQVEKTAAA 261 EL+ + L + ++V QP+ SE GS+ SQ A Sbjct: 183 ELTDDDAGMLKQGERLLSV-QPDA---EPTSE---------------GSYVSQALTDPAE 223 Query: 262 AAI-----SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILR-TLSGSREQSLL 315 AA+ +Y+ TQ + I + L +D ARSNL+IL+ + +G + +LL Sbjct: 224 AAVVQMLMAYLLNTQKRSLAHIQKAVAYQPSAYLEMDQDARSNLDILQNSRTGRKGDTLL 283 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T GGRL + + PL D I+ R + + + + + +Q+ L D+ Sbjct: 284 SLLDSTKTAMGGRLLKQWLDRPLLDIDAISVRQNQVQDLLDHFFERSELQERLTKVYDLE 343 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEK 433 R R+ G +D+ ++ + I ++ K D + LR ++ + + + + Sbjct: 344 RLAGRVAFGTVNGRDLIQLQTSLDQIPAIQDVLGKLDDGSFKALRSKMDPVSDVAGLIRR 403 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + + P DGG + G + LD R SK+ IA L+ + T I LKI Sbjct: 404 AIEP----EPPISVTDGGLILRGYNQKLDSYRDAMKNSKQWIAELEASERKATGIHTLKI 459 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 ++N GYFIEVT S+ D + R+ +QT++N RF T EL + E I A S Sbjct: 460 RYNKVFGYFIEVTKSNL-----DKIPEGRYERKQTLTNAERFITPELKEKETLILEAQES 514 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + +E + F+ + + + Q + L + I+ +D+ + A +A+ +Y RP + T+ I Sbjct: 515 STALEYDLFQDIRDKVKAQIKRLQALAAQISSLDVLQSFATVAENSHYVRPTMHAGTHDI 574 Query: 614 -VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 VK GRHP+VE L + S +I ND ++ D + L+TGPNM GKST++RQ AL Sbjct: 575 NVKGGRHPVVEHVLGRDS---YIPNDVIMNHDTD-----MLLITGPNMSGKSTYMRQLAL 626 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 IVIMAQ GS+VPA A + I D++F+R+G+AD+LA+G STFMVEM+E + L+ AT S Sbjct: 627 IVIMAQAGSFVPADVADLPIFDQIFTRIGAADDLANGESTFMVEMLEANAALSHATASSL 686 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 ++ DEIGRGTAT DG+++A A IE+LH+ + L +TH+HELT LS SL + N + Sbjct: 687 ILFDEIGRGTATYDGMALAQAIIEFLHDHVHAKTLFSTHYHELTSLSDSLAKLKNVHVGA 746 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + + ++FLHK++PG AD SYGI V KLAGLP +++RA ILK E Sbjct: 747 VEEHGNLVFLHKMMPGPADKSYGIHVAKLAGLPADLLARADTILKQLE 794 >gi|116495688|ref|YP_807422.1| DNA mismatch repair protein MutS [Lactobacillus casei ATCC 334] gi|301067238|ref|YP_003789261.1| mismatch repair ATPase (mutS family) [Lactobacillus casei str. Zhang] gi|122262910|sp|Q035Z2|MUTS_LACC3 RecName: Full=DNA mismatch repair protein mutS gi|116105838|gb|ABJ70980.1| DNA mismatch repair protein MutS [Lactobacillus casei ATCC 334] gi|300439645|gb|ADK19411.1| Mismatch repair ATPase (MutS family) [Lactobacillus casei str. Zhang] Length = 857 Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust. Identities = 298/828 (35%), Positives = 457/828 (55%), Gaps = 53/828 (6%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S TPMM+QY EIK+ PD+ +FYR+GDFYELF DDA+ ++ L +TLT R K IPM Sbjct: 6 SETPMMQQYNEIKAQYPDAFLFYRIGDFYELFNDDAIKGAQLLELTLTARNKSADDPIPM 65 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H Y+ LI G+++AICEQ+E P +A +V+R V++LVTPGT + + Sbjct: 66 AGVPHHAVQSYVDILIDHGYKVAICEQMEDPKKAV-----GMVKRAVIQLVTPGTNVDIK 120 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEK 202 + +NY+ AV +A A+ D+STG K++ + L +++ + +EI+ E Sbjct: 121 AGAAKSNNYITAVMPHAAGYAFAYADVSTGELKVTDLKSKFALQNELSALATKEIVVPE- 179 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSF-SQVEKTAAA 261 EL+ + L + ++V QP+ SE GS+ SQ A Sbjct: 180 ELTDDDAGMLKQGERLLSV-QPDA---EPTSE---------------GSYVSQALTDPAE 220 Query: 262 AAI-----SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILR-TLSGSREQSLL 315 AA+ +Y+ TQ + I + L +D ARSNL+IL+ + +G + +LL Sbjct: 221 AAVVQMLMAYLLNTQKRSLAHIQKAVAYQPSAYLEMDQDARSNLDILQNSRTGRKGDTLL 280 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T GGRL + + PL D I+ R + + + + + +Q+ L D+ Sbjct: 281 SLLDSTKTAMGGRLLKQWLDRPLLDIDAISVRQNQVQDLLDHFFERSELQERLTKVYDLE 340 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEK 433 R R+ G +D+ ++ + I ++ K D + LR ++ + + + + Sbjct: 341 RLAGRVAFGTVNGRDLIQLQTSLDQIPAIQDVLGKLDDGSFKALRSKMDPVSDVAGLIRR 400 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + + P DGG + G + LD R SK+ IA L+ + T I LKI Sbjct: 401 AIEP----EPPISVTDGGLILRGYNQKLDSYRDAMKNSKQWIAELEASERKATGIHTLKI 456 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 ++N GYFIEVT S+ D + R+ +QT++N RF T EL + E I A S Sbjct: 457 RYNKVFGYFIEVTKSNL-----DKIPEGRYERKQTLTNAERFITPELKEKETLILEAQES 511 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + +E + F+ + + + Q + L + I+ +D+ + A +A+ +Y RP + T+ I Sbjct: 512 STALEYDLFQDIRDKVKAQIKRLQALAAQISSLDVLQSFATVAENSHYVRPTMHAGTHDI 571 Query: 614 -VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 VK GRHP+VE L + S +I ND ++ D + L+TGPNM GKST++RQ AL Sbjct: 572 NVKGGRHPVVEHVLGRDS---YIPNDVIMNHDTD-----MLLITGPNMSGKSTYMRQLAL 623 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 IVIMAQ GS+VPA A + I D++F+R+G+AD+LA+G STFMVEM+E + L+ AT S Sbjct: 624 IVIMAQAGSFVPADVADLPIFDQIFTRIGAADDLANGESTFMVEMLEANAALSHATASSL 683 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 ++ DEIGRGTAT DG+++A A IE+LH+ + L +TH+HELT LS SL + N + Sbjct: 684 ILFDEIGRGTATYDGMALAQAIIEFLHDHVHAKTLFSTHYHELTSLSDSLAKLKNVHVGA 743 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + + ++FLHK++PG AD SYGI V KLAGLP +++RA ILK E Sbjct: 744 VEEHGNLVFLHKMMPGPADKSYGIHVAKLAGLPADLLARADTILKQLE 791 >gi|283850736|ref|ZP_06368023.1| DNA mismatch repair protein MutS [Desulfovibrio sp. FW1012B] gi|283573979|gb|EFC21952.1| DNA mismatch repair protein MutS [Desulfovibrio sp. FW1012B] Length = 880 Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust. Identities = 302/894 (33%), Positives = 459/894 (51%), Gaps = 55/894 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM+ QY+ +K +P +L+ YRMGDFYE+FF+DA A+R L ITLT R +PMCG Sbjct: 2 TPMLEQYLRVKGEHPGALLLYRMGDFYEMFFEDAETAARELQITLTSRNPGAEAPVPMCG 61 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H YI +L++ G ++A+C+QIE P AK LV+R V R++TPGT E+ L Sbjct: 62 VPHHAVEGYIAQLLEKGFKVAVCDQIEDPKLAK-----GLVKRAVTRVLTPGTAVEEGNL 116 Query: 146 SPTDSNYLMAVARIRTEWA--IAWIDISTGIFK-ISTSNHDRLISDIMRIDPREIIFSEK 202 + N+L A+ E A +AW+D STG + + + + RL ++I PRE++ + Sbjct: 117 RAKEHNFLAALFFDADERAGGLAWVDFSTGEWSGLFSRDAARLWQWTVKIGPRELLLPDG 176 Query: 203 ELSHAEYKSLFETLG-NVAVAQPNVFFDHSISESRIADYYNITTVDTF--GSFSQVEKTA 259 E F G ++ P FD + ++ + + G Q+ + A Sbjct: 177 ----LEPPKDFPKEGVQISRFPPRPHFDFAGGRDKVLKAQAVADLAALDLGDKPQLVR-A 231 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE-QSLLKTI 318 A ++Y+ TQM + ++ T+ +D NLEI R L G + +L + Sbjct: 232 MGALLTYLAATQMRELGHLSPFRPVNLGRTMLLDEVTEKNLEIFRRLDGGKGVGTLWHVL 291 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D ++T GGRL R+ P D I ++ + +++ L D+ R Sbjct: 292 DKTMTPMGGRLLESRLRQPWLDLGPILETQAAVASLAADEGRRTGLREALAGVYDLERLT 351 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT---L 435 +R+ + R P+D +R + + + L +D + + VE L +LE L Sbjct: 352 TRIFLNRAAPRDFTALRQSLGALPRLRELASADD--QAPKAFVELLADF-DALEDAFALL 408 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 S L D P +GG R G LDE L + + I +L + E + LK+ + Sbjct: 409 SRALVDSPPLAVTEGGLFRPGYHPELDELLELTEHGEARIEALLQEEREACNLPRLKLGY 468 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+ E++ S+ S F RQT++N R+ T L DLE R+ +A + Sbjct: 469 NRVFGYYFELSKSAGS-------PPGHFERRQTLANCERYVTPALKDLEERLLSAADKRK 521 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E F L + + + + +A +D+ LA A + RP + ++ Sbjct: 522 TLEYNLFLDLRTQVAGLRDRIMGTAARVARLDVWQGLAEAAVIGEWTRPELRQDLGITIR 581 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP++E Q +I ND + ++ +L L+TGPNM GKST LRQ ALI I Sbjct: 582 AGRHPVIEAA---QGIGNYIPNDISVD-----DAARLLLITGPNMAGKSTVLRQTALIAI 633 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +AQ+GS+VPA+ A IG+VD++F RVG++DNLA G+STFMVEM+ETA IL QA +S VIL Sbjct: 634 LAQIGSFVPATQAVIGLVDRVFCRVGASDNLARGQSTFMVEMMETARILRQAGKRSLVIL 693 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRG---LLATHFHELTDLSKSLKRFHNATLQV 792 DEIGRGTAT DGL++AWA +E L +G L ATH+HELT L L N + V Sbjct: 694 DEIGRGTATFDGLALAWAVVEDLAGREGGQGVRTLFATHYHELTALEGRLPGLRNFNIAV 753 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR- 851 + IIFL +++PG AD SYG++V +LAG+P V+ RA ++L+T E+ ++ R Sbjct: 754 KEWKGDIIFLRRLLPGPADRSYGVEVARLAGVPRNVVKRARELLETLERSRDPGKEAGRG 813 Query: 852 -----------LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 L P E+ ++ + ++++ L LD M+PL AL L Sbjct: 814 GRERGQPVLPGLMAP--APAETDAPVADPGRPLLDELSRLELDRMTPLEALTLL 865 >gi|229086318|ref|ZP_04218496.1| DNA mismatch repair protein mutS [Bacillus cereus Rock3-44] gi|228697013|gb|EEL49820.1| DNA mismatch repair protein mutS [Bacillus cereus Rock3-44] Length = 886 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 296/922 (32%), Positives = 505/922 (54%), Gaps = 93/922 (10%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R IPMCGVP Sbjct: 1 MIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 61 YHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTIDE 115 Query: 148 TDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREII----FS 200 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ FS Sbjct: 116 KENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDVLLEVYATGSKEIVVDSTFS 175 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 + ELS L ETL + ++ + + + E N+T + ++ Sbjct: 176 KDELS-----KLTETL-KMTISYED---ETKVPEGLEHLVKNVTQTKLVAAVGRL----- 221 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSLLK 316 ++Y+ +TQ K ++ + + DI T + ID ++ NLE+ TL + + SLL Sbjct: 222 ---LNYVLRTQ---KRSLDHLQPVDIYYTNQFMKIDVHSKRNLELTETLRTKEKTGSLLW 275 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D + T GGR+ + + PL KI RL+ + F+ + L +++ LK D+ R Sbjct: 276 LLDKTKTAMGGRMLKQWMERPLIQKEKIEERLEMVETFVNDYFLREDLKEKLKEVYDLER 335 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSLEKT 434 ++ G +D+ +R + IL L N L + +SL + Sbjct: 336 LAGKVAYGNVNARDLLQLRRSLLQVPAILEAISLLDNSYAARLIQGADPC----ESLTEL 391 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L + ++ P +DG ++DG + LD+ R + K IA L+ + E T IK+LKI Sbjct: 392 LGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKREREITGIKSLKIG 451 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+IEVT ++ + L + R+ +QT++N RF T EL + E I A Sbjct: 452 YNRIFGYYIEVTKANLAAL-----PEGRYERKQTLANAERFITDELKEKETLILEAEEKI 506 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ + + Sbjct: 507 VQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTDKREIFI 566 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++RQ AL+ Sbjct: 567 KDGRHPVVEKVL---NGKLYVPNDCVMPENMD-----MFLITGPNMSGKSTYMRQLALVT 618 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ +S ++ Sbjct: 619 VMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERSLIL 678 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L SL++ N + + Sbjct: 679 FDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEDSLEQLKNVHVSAIE 738 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--------KLYHHN 846 N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E K N Sbjct: 739 ENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLEGQEEIIIPKRTEVN 798 Query: 847 QKDMRLYYP----------EIQTKESKNNLS------------KNDKLFVE--------K 876 ++ + P E++T KN S K DK ++ + Sbjct: 799 VQEEMVQEPVAEESVVIKEEVETLLEKNEESQLSFFATERSSEKQDKPVLDSKETAVLTQ 858 Query: 877 IKCLNLDEMSPLTALKTLYAVK 898 IK ++L +M+PL AL LY ++ Sbjct: 859 IKKIDLLDMTPLEALNELYRLQ 880 >gi|1619909|gb|AAB16999.1| DNA mismatch repair protein [Thermotoga maritima] Length = 793 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 293/824 (35%), Positives = 456/824 (55%), Gaps = 52/824 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M QY+ IK DS++ +R+GDFYE FF+DA + S+ L I LT+R +D PM G Sbjct: 4 TPLMEQYLRIKEQYKDSILLFRLGDFYEAFFEDAKIVSKVLNIVLTRR-----QDAPMAG 58 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H N Y++KL++ G+++AIC+Q+E P ++KK L+RR V R+VTPG++ ED+ L Sbjct: 59 IPYHALNTYLKKLVEAGYKVAICDQMEEPSKSKK-----LIRREVTRVVTPGSIVEDEFL 113 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMR-IDPREIIFSEKEL 204 S T+ NY+ V+ + + + D+STG + S+ ++ D+++ +II E Sbjct: 114 SETN-NYMAVVSEEKGRYCTVFCDVSTGEVLVHESSDEQETLDLLKNYSISQIICPEHLK 172 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S SL E V + ++ + E A YN+ + F S + A AA I Sbjct: 173 S-----SLKERFPGVYTETISEWYFSDLEEVEKA--YNLKDIHHF-ELSPLALKALAALI 224 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 Y+K T + + P + + +DSA NL + G R ++L ++ + T Sbjct: 225 KYVKYTMIGEDLNLKPPLLISQRDYMILDSATVENLS---WIPGDRGKNLFDVLNNTETP 281 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 G RL + I PL D +I RL ++ + + + + ++ +L + DV R +SR++ Sbjct: 282 MGARLGKKWILHPLVDRKQIEERLKAVERLVNDRVSLEEMRNLLSNVRDVERIVSRVEYN 341 Query: 385 RGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLP 444 R P+D+ +R+ + I LN L G +KL P+ L L + DD Sbjct: 342 RSVPRDLVALRETLEI-IPKLNEVLST------FGVFKKLA-FPEGLVDLLRKAIEDDPV 393 Query: 445 TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIE 504 +G ++ G + LDE R L + ++ + + K E T I+ L++ +N GY+IE Sbjct: 394 GSPGEGKVIKRGFSSELDEYRDLLEHAEERLKEFEEKERERTGIQKLRVGYNQVFGYYIE 453 Query: 505 VTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEI 564 VT ++ + D E K QT+ N RF T EL + E +I A +E E F Sbjct: 454 VTKANLDKIPDDYERK------QTLVNSERFITPELKEFETKIMAAKERIEELEKELFTS 507 Query: 565 LSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEK 624 + + + E L S+ +A ID LA A NY +P+ + +K GRHP+VE+ Sbjct: 508 VCEEVKKHKEVLLEISEDLAKIDALSTLAYDAIMYNYTKPVF-SEDRLEIKGGRHPVVER 566 Query: 625 TLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684 ++ F+ ND + N + ++TGPNM GKSTF+RQ LI +MAQ+GS+VP Sbjct: 567 F-----TQNFVENDIYMD-----NEKRFVVITGPNMSGKSTFIRQVGLISLMAQIGSFVP 616 Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744 A A + + D++F+R+G+ D+LA GRSTF+VEM E A IL ++TN+S V+LDE+GRGT+T Sbjct: 617 AQKAILPVFDRIFTRMGARDDLAGGRSTFLVEMNEMALILLKSTNKSLVLLDEVGRGTST 676 Query: 745 LDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHK 804 DG+SIAWA E L + C+ L ATHF ELT+L K + N T+ V + + +IF HK Sbjct: 677 QDGVSIAWAISEELIKRG-CKVLFATHFTELTELEKHFPQVQNKTILVKEEGKNVIFTHK 735 Query: 805 VIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 V+ G+AD SYGI+V K+AG+P+ VI+RAY+IL E+ + +N K Sbjct: 736 VVDGVADRSYGIEVAKIAGIPDRVINRAYEIL---ERNFKNNTK 776 >gi|90962103|ref|YP_536019.1| DNA mismatch repair protein MutS [Lactobacillus salivarius UCC118] gi|122448803|sp|Q1WT15|MUTS_LACS1 RecName: Full=DNA mismatch repair protein mutS gi|90821297|gb|ABD99936.1| DNA mismatch repair protein [Lactobacillus salivarius UCC118] Length = 876 Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust. Identities = 299/908 (32%), Positives = 479/908 (52%), Gaps = 87/908 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY++IK PD+ +FYR+GDFYE+F+DDA+ S+ L +TLT+R K IPMCG Sbjct: 8 TPMMEQYMQIKKQYPDAFLFYRLGDFYEMFYDDAIKGSQILELTLTQRNKKAVDPIPMCG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A +YI L+ G+++AICEQ+E P +AK +V+R V++LVTPGT+ ++ Sbjct: 68 VPHHAAQNYIDILVDKGYKVAICEQVEDPKQAK-----GMVKREVIQLVTPGTIIDESAG 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEKEL 204 ++NYL A+ ++ A++D+STG K+S N D ++++++ + +EI+ + Sbjct: 123 EAKENNYLTALHFENDQYGFAYVDLSTGELKVSVLNTIDTILNELISLRTKEIV-----V 177 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 + + + N+ + ISE + + + + + VE I Sbjct: 178 DSSVNDDVLNQIKNLKIL---------ISEQNDTEDSSEVSFASQDVENSVEVEVIKHLI 228 Query: 265 SYIKKTQMVNKPTIGYPERE---DIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDY 320 +Y+K TQ K + + +R + L +D A+ NLE+LR L ++ +LL +D Sbjct: 229 TYLKITQ---KRALSHLQRAVHYEPSQYLKMDYHAKRNLELLRNLRTQKKSGTLLWLLDS 285 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T GGRL + I PL + +I R + + + + +Q+ L + D+ R + Sbjct: 286 TKTAMGGRLLKQWIDRPLINLKEIEARQSMVENLLTHYFERSGLQEELVNVYDLERLAGK 345 Query: 381 LKIGRGEPKDIAVIRDG------IRSGINILN-------LFLKNDLPEELRGAVEKLKKL 427 + G +D+ +R IR I LN +F K D E++ +E Sbjct: 346 VAFGSVNGRDLIQLRTSLEHIPQIRYIIQELNDDGTFDEIFDKLDPIEDIADLIE----- 400 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 Q++E D+ P DG ++ G LDE K +A L+ K + T Sbjct: 401 -QAIE--------DEPPISVTDGNLIKPGYSQELDEYVDAMKNGKAWLAELEAKERQATG 451 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 I NLKI N GY+IEV+ + S L +DR+ +QT++N RF T EL + E+ I Sbjct: 452 INNLKIGFNRVFGYYIEVSKGNLSKL-----PEDRYQRKQTLTNAERFITPELKEKESLI 506 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP-II 606 A + A +E + F + + I ++ + + + +A +D+ + A ++++ ++ +P + Sbjct: 507 LGAESKAKELEYKIFTGIRDQIKDEIQRIQELAGAVAALDVLQSFATVSEQGHFVKPELT 566 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 ++ + +KDG HP+VEK + +QS +I ND + D + L+TGPNM GKST+ Sbjct: 567 TDNHSLDIKDGWHPVVEKVMGKQS---YIPNDIKMDDDLD-----VLLITGPNMSGKSTY 618 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ AL V++AQ+G +VPA A + I D++F+R+G+AD+L SG STFMVEM ET L Sbjct: 619 MRQLALTVVIAQIGCFVPAKSAKMPIFDQIFTRIGAADDLISGESTFMVEMKETNVALMN 678 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT S ++ DEIGRGTAT DG+++A A IEY+H + L +TH+HELT L +SL + Sbjct: 679 ATRNSLLLFDEIGRGTATYDGMALAQAIIEYVHNNIHAKTLFSTHYHELTILDESLDKLQ 738 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN 846 N + + N +IFLHK+ G AD SYGI V KLAG+P+ ++ RA IL E Sbjct: 739 NVHVGAIEKNGELIFLHKMQEGPADKSYGIHVAKLAGMPDKLLKRADSILNKLESENDFT 798 Query: 847 QKDMRLYYPEIQTKESKNN-------------------LSKNDKLFVEKIKCLNLDEMSP 887 Y E +E N L N +++IK NL M+P Sbjct: 799 VDSTESYAEEKHIEEKNENETSEIQEEQLSLFQPEAVSLDSNQSKILKEIKNANLMGMTP 858 Query: 888 LTALKTLY 895 + + ++ Sbjct: 859 MDVMNIVF 866 >gi|15674192|ref|NP_268367.1| DNA mismatch repair protein [Lactococcus lactis subsp. lactis Il1403] gi|13878591|sp|Q9CDK9|MUTS_LACLA RecName: Full=DNA mismatch repair protein mutS gi|12725276|gb|AAK06308.1|AE006450_1 mismatch repair protein MutS [Lactococcus lactis subsp. lactis Il1403] Length = 840 Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust. Identities = 290/885 (32%), Positives = 487/885 (55%), Gaps = 65/885 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L +TLT R K+ IPM G Sbjct: 6 SPGMQQYLDIKQDYPDAFLLFRMGDFYELFYDDAVNAAQILELTLTSRNKNSENPIPMAG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A YI KL+ +G+++A+ EQ+E P +A +V+R V +++TPGT + Sbjct: 66 VPHHAAAEYIDKLVDLGYKVAVAEQMEDPKKAV-----GIVKRAVTQVITPGTTIDTA-- 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204 + D+N+L+A+ +A++++D+STG FK++ S ++ +I + REI+ + L Sbjct: 119 NSVDNNFLVAIDFKDKHYALSYMDLSTGEFKVTELSEFSAVVGEIASLKAREIV-AGFTL 177 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 ++ K +FE N+ +++ I E+ + D +T + E A+ + Sbjct: 178 DESQLK-VFERQMNLLISE-----QLEIPENLLIDLSGLTAL---------ENQVASKLL 222 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT 323 +Y+K+TQM + + E +I+ L +D A +S+LE+ +++ +L +D + T Sbjct: 223 AYVKETQMRDLSHLQEVEHYEIKDFLQMDFATKSSLELTANKRENKKHGTLYWLLDETKT 282 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G R+ I PL ++ I R++ + F+ + + + + LK D+ R SR+ Sbjct: 283 AMGTRMLRSWIDRPLISNSAIQKRMEIVQIFLDHFFERSDLIEALKGVYDLERLASRVSF 342 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLK--NDLP-EELRGAVEKLKKLPQSLEKTLSSMLS 440 G+ P D + + + S + + L N+ P EEL+ +L ++P+ L ++S +S Sbjct: 343 GKAVPVDFLQLANSL-SNVPAIKYILGMLNEAPLEELKS---QLDEIPE-LSGLINSAIS 397 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 ++ +GG ++ G +A LD+ R + IA L+ +T I L+I +N G Sbjct: 398 ENASRTITEGGIIKKGYNAQLDKYREALENGTSWIAKLEADEKAKTGISTLRIDYNRKDG 457 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+ +T S + + + F + T+ N RF + EL ++E + A + +E + Sbjct: 458 YYFHITQSQLNSVP------EHFYRKATLKNSERFGSQELTEIEEIMLEAREKSSSLEYD 511 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI-VKDGRH 619 F L + L ++ IA ID +L+++A++Q Y RP + + + + +K GRH Sbjct: 512 LFMGLRTETEQYIGRLQALAKTIAEIDCLQSLSVVAEKQGYIRPTLTDGSRIVEIKGGRH 571 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 +VE + Q ++ ND +L D + L+TGPNM GKST++RQ AL VIMAQ+ Sbjct: 572 AVVEAVMGAQE---YVPNDIELPEQTD-----IQLITGPNMSGKSTYMRQFALTVIMAQI 623 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPA A++ I D +F+R+G++DNL SG STFMVEM E + +A+++S +I DE+G Sbjct: 624 GSFVPAETANLPIFDAIFTRIGASDNLISGESTFMVEMSEANHAIQKASSRSLIIFDELG 683 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A A IEY+H+ + L ATH+HELTDL ++L N + + N + Sbjct: 684 RGTATYDGMALAQAIIEYVHDHIGAKTLFATHYHELTDLDEALDHLDNVHVATLEQNGNV 743 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE------KLYHHNQKDMRLY 853 FLHK+ G AD SYGI V K+AGLP ++ RA IL+ E K Q+ + L+ Sbjct: 744 TFLHKITEGPADKSYGIHVAKIAGLPQPLLERADLILQKLENKPLPAKKVADEQEQLSLF 803 Query: 854 YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + ++N +EKIK N+D M+ AL L+ +K Sbjct: 804 -----------DFTENSSEIIEKIKRQNVDNMTAREALNFLWELK 837 >gi|111115632|ref|YP_710250.1| DNA mismatch repair protein MutS [Borrelia afzelii PKo] gi|123145626|sp|Q0SM54|MUTS_BORAP RecName: Full=DNA mismatch repair protein mutS gi|110890906|gb|ABH02074.1| DNA mismatch repair protein [Borrelia afzelii PKo] Length = 862 Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust. Identities = 291/826 (35%), Positives = 464/826 (56%), Gaps = 51/826 (6%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K+ TPMMRQY++IK D+++F+R+G+FYE+FFDDA+ AS+ L +TLTKR +++P Sbjct: 3 KNVTPMMRQYLDIKKKYKDAIIFFRVGNFYEMFFDDAIEASKLLNLTLTKR-----ENVP 57 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP HT+ YI+KLI ++AICEQ A + + R VV ++TPG + ++ Sbjct: 58 MCGVPYHTSKEYIRKLILFDKKVAICEQ------AANSTSVGPLEREVVEVITPGVIVDE 111 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDIST---GIFKISTSNHDRLISDIMRIDPREIIF 199 L+ +NYL+A++ + ++ ++ID+ST GI S ++L D+ + P+EII Sbjct: 112 DFLNDDVNNYLVAISDYKNYYSFSYIDLSTSSLGIMFYENSFFEKLKRDLEKYSPKEIIV 171 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 SE + EY + P D ++ I +++NI + + G F + EK Sbjct: 172 SEN--FYYEYSEKLNLNRFLINRVPAWHLDKDVAIKTIKEHFNILGLSSLG-FDE-EKPY 227 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQS---TLFIDSAARSNLEILRTLSG-SREQSLL 315 + I + K + ++ DI + +F+D + NLE+++ + S + SL Sbjct: 228 YISIFLIINHIKNNLKNLLSNIDKIDINNDSLYMFLDDVTQVNLELVKNNNDFSSQYSLY 287 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 ++ T G RL E I +P+ + +INTRLD + FF +N L +++ + DV Sbjct: 288 SVLNDCKTAMGKRLLREFILNPILNIPEINTRLDHVEFFCKNISLTMTLREAFVNIWDVE 347 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEK--LKKLPQSLEK 433 R +SR+++ R KD I + + LF K++ E+ + K+ + Sbjct: 348 RIISRIQMKRYIKKDFLFIEKSLSVFFLVKKLFDKHNFDYWNFDKFEEDSISKVYFLINS 407 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 +SS SD+L ++ G D LD + L+ + + I +KI NLKI Sbjct: 408 AISSS-SDEL---------IKRGYDLKLDSLKDLKINANKYIDEYLESERLLSKINNLKI 457 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 + NN G F EVT S+ + + F+ QT+++ R+ T +LI LE I NA +S Sbjct: 458 RKTNNRGLFFEVTKSNYA------QVPPHFMESQTLNSSKRYKTEKLISLEANINNAEDS 511 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + E E F+ +++ +++ ++ L ++ A ID+ + LAK+ Y RPI+ S Sbjct: 512 VVAFEQEIFDEIASNVVKHNKVLKKVAEFFAYIDLVVNFGYLAKKNEYKRPILTCSKEIF 571 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLW-LLTGPNMGGKSTFLRQNAL 672 ++ RHP+VE +K +++ F N + N K + L+TGPNM GKST+LRQ AL Sbjct: 572 LEKSRHPVVEHYVK--NTEIFTENFVKI------NKEKYFCLITGPNMAGKSTYLRQVAL 623 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 I +MA +GS+VPAS A IGI DK+F R+G++DNLA G STF+VEM ETA+IL AT +S Sbjct: 624 ITLMAHIGSFVPASRAVIGITDKIFCRIGASDNLAKGESTFLVEMNETANILRNATEKSL 683 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 +I+DE+GRGT+T DGL+IA++ IEY+ E + R L ATHFHEL+ ++ K F N ++++ Sbjct: 684 IIMDEVGRGTSTNDGLAIAYSIIEYILEYIKARSLFATHFHELSAINH--KAFINLSMKI 741 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKT 838 ++FL +V + +SYGI V ++AGLP V+ RA ILK+ Sbjct: 742 EKQGNELVFLREVEEKPSLNSYGIYVARIAGLPLRVVDRANVILKS 787 >gi|306834546|ref|ZP_07467659.1| DNA mismatch repair protein MutS [Streptococcus bovis ATCC 700338] gi|296777692|gb|ADH43109.1| DNA mismatch repair protein MutS [uncultured bacterium MID12] gi|304423348|gb|EFM26501.1| DNA mismatch repair protein MutS [Streptococcus bovis ATCC 700338] Length = 856 Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust. Identities = 291/892 (32%), Positives = 476/892 (53%), Gaps = 64/892 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY+++K PD+ + +RMGDFYELF+DDA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYLDVKKDYPDAFLLFRMGDFYELFYDDAVKAAQILEISLTSRNKNADNPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI L+++G+++AI EQ+E P +A +V+R VV+++TPGT + Sbjct: 67 VPYHSAQQYIDVLVEMGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTAVDSS-- 119 Query: 146 SPTDSN-YLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKE 203 P ++N +L+A+ + +A++D+STG F S S+ L S+I+ + REI+ E Sbjct: 120 KPDNANNFLVAIDSDGKTFGLAYMDVSTGEFFSTSLSDFTSLRSEILNLKAREIVVG-YE 178 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 LS E SL V Q N+ S + R Y ++ +D + +E +AA Sbjct: 179 LSETEQHSL--------VKQLNLLL--SFEQER---YEDVHLIDP--DLTALEISAAEKL 223 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSI 322 + Y+ TQ + +I+ L + +S+L++L S++ SL +D + Sbjct: 224 LQYVHTTQKRELSHLQKLVHYEIKDYLQMSYTTKSSLDLLENARTSKKHGSLYWLLDETK 283 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G RL I PL + +I R + + F+ N + + LK D+ R SR+ Sbjct: 284 TAMGMRLLRNWIDRPLVNQAQIEERQNIVQVFLDNFFERSDLTDSLKGVYDIERLASRVS 343 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 G+ PKD+ + + I + + P L V + LP+ LE + S + D Sbjct: 344 FGKANPKDLLQLGHTLAQVPRIKAILESFESPH-LDKLVNSIDTLPE-LESLIRSAIDPD 401 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P +G +R G D LD+ R + + IA ++ K + I NLKI +N GY+ Sbjct: 402 APAVITEGSIIRTGFDEILDKYRKVMREGTSWIAEVETKERAASGITNLKIDYNKKDGYY 461 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 VT+S+ S++ D F + T+ N RF T EL +E + A + +E + F Sbjct: 462 FHVTNSNLSLVP------DYFFRKATLKNSERFGTAELAKIEGEMLEAREQSASLEYDIF 515 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 + + L + ++ ++ +D+ +LA++A+ +Y RP ++S ++ GRH +V Sbjct: 516 MRVRGQVERYITRLQDLAKALSTVDVLQSLAVVAENNHYVRPTFNDSHEIKIEKGRHAVV 575 Query: 623 EKTLKQQSSKP-FIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 EK + Q P I D D++ + L+TGPNM GKST++RQ AL VIMAQMGS Sbjct: 576 EKVMGTQEYIPNTITFDADIN---------IQLITGPNMSGKSTYMRQLALTVIMAQMGS 626 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 YV A ++ + D +F+R+G+AD+L SG+STFMVEM+E + +A++QS ++ DE+GRG Sbjct: 627 YVAAESVNLPVFDAIFTRIGAADDLISGQSTFMVEMMEANQAIKRASSQSLILFDELGRG 686 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 TAT DG+++A + IEY+H+ + + ATH+HELT LS L N + + N + F Sbjct: 687 TATYDGMALAQSIIEYIHDHIGAKTMFATHYHELTALSTILTHLVNVHVATLEKNGDVTF 746 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTK- 860 LHK+ G AD SYG+ V K+AGLP ++ RA IL E ++L PE++ + Sbjct: 747 LHKIAEGPADKSYGVHVAKIAGLPEELLQRADSILTNLES----GAAQLQL-TPEVEAEP 801 Query: 861 -----ESKNNLSKNDKLF---------VEKIKCLNLDEMSPLTALKTLYAVK 898 E +++ LF ++ +K ++L ++P+ A+ +Y +K Sbjct: 802 ITIKSEVAEPVAEQLSLFADDSSNQEVIKVLKKVDLMNLTPMQAMNVIYELK 853 >gi|163941457|ref|YP_001646341.1| DNA mismatch repair protein [Bacillus weihenstephanensis KBAB4] gi|229486459|sp|A9VS13|MUTS_BACWK RecName: Full=DNA mismatch repair protein mutS gi|163863654|gb|ABY44713.1| DNA mismatch repair protein MutS [Bacillus weihenstephanensis KBAB4] Length = 890 Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust. Identities = 277/830 (33%), Positives = 468/830 (56%), Gaps = 59/830 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R + IPMCG Sbjct: 5 TPMIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 65 VPHHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTI 119 Query: 146 SPTDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEK 202 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 120 DEKENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DS 178 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTV-----DTFGSFSQVEK 257 S E L ETL +IS Y + TT+ S SQ + Sbjct: 179 TFSKDELNKLTETL------------KMTIS------YEDTTTIPEGLEHLVKSVSQAKL 220 Query: 258 TAAAAAI-SYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQ 312 A + +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + Sbjct: 221 IKAIGRLFNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTG 277 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 SLL +D + T GGR+ + + PL K+ RL+ + F+ + L +++ LK Sbjct: 278 SLLWLLDKTKTAMGGRMLKQWMERPLIQKEKVEERLEMVETFVNDYFLREDLKEKLKEVY 337 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQS 430 D+ R ++ G +D+ +R + IL L N L + +S Sbjct: 338 DLERLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPC----ES 393 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L + L + ++ P +DG ++DG + LD+ R + K IA L+ + + T +K+ Sbjct: 394 LTELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGVKS 453 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LKI +N GY+IEVT ++ L + R+ +QT++N RF T EL + E I A Sbjct: 454 LKIGYNRIFGYYIEVTKANLGAL-----PEGRYERKQTLANAERFITDELKEKETLILEA 508 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ N Sbjct: 509 EEKIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTNKR 568 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++RQ Sbjct: 569 EIFIKDGRHPVVEKVL---NGKLYVPNDCIMPEKMD-----VFLITGPNMSGKSTYMRQL 620 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 AL+ +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ + Sbjct: 621 ALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASER 680 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S ++ DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L +SL + N + Sbjct: 681 SLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLDQLKNVHV 740 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N ++FLHK+ G AD SYGI V +LA LP ++I+RA ++L E Sbjct: 741 SAIEENGKVVFLHKIQDGAADKSYGIHVAQLAELPESLIARAKEVLAQLE 790 >gi|33862201|ref|NP_893762.1| DNA mismatch repair protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|44888174|sp|Q7UZL6|MUTS_PROMP RecName: Full=DNA mismatch repair protein mutS gi|33634419|emb|CAE20104.1| putative DNA mismatch repair protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 915 Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust. Identities = 305/855 (35%), Positives = 467/855 (54%), Gaps = 75/855 (8%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TP+++ Y+ +K N + L+ YR+GDF+E FF+DA+ S L ITLT + GK +GK IPM Sbjct: 86 TPILKHYVTLKEENSNRLLLYRLGDFFECFFEDAVFISNLLEITLTSKDAGKDIGK-IPM 144 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSL-VRRNVVRLVTPGTLTED 142 GVP H Y +LIK H + IC+Q+E K GN ++R + R++TPGT+ E+ Sbjct: 145 AGVPYHAMERYCAELIKKNHSVVICDQLE-----KSTGNYGTPLKRGITRIITPGTVIEE 199 Query: 143 QLLSPTDSNYLMAV------ARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPR 195 +L +N++ A+ + EW I+ D+STG + + + +L +I+++D Sbjct: 200 GMLVAKKNNWITAIHLSENISENLYEWGISRADVSTGELLTMEGQSISKLFDEIIKLDTS 259 Query: 196 EIIFS---EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISES--RIADYYNITTVDTFG 250 EII EK+L + + + T V Q F SI+E+ I +Y+ I +++ G Sbjct: 260 EIIIGSNEEKKLLENQNQQITYT-----VTQETFF---SINEACLTIKNYFQILSLEGLG 311 Query: 251 SFSQVEKTAAAAAI-SYIKKTQMVN-------KPTIGYPEREDIQSTLFIDSAARSNLEI 302 T A + +Y++K N K ++ +P+ + + L ID + NLEI Sbjct: 312 LKHLNNATKALGGLLNYLEKINPSNLENDSSLKISLDFPQIQFPKDHLIIDYQTQKNLEI 371 Query: 303 LRTLSGSREQ----SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP 358 T RE SLL +ID + T G R I SPL + +IN R + I+ F+++ Sbjct: 372 KNT---QRENNYAGSLLWSIDRTYTCMGARCLRRWIDSPLLNIDEINKRQNIISNFLESK 428 Query: 359 ILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSG---INILNLFLKNDLPE 415 L Q IL++ D+ R R G P+D+ I +G++ +I+ LF K ++P Sbjct: 429 KLRTDTQNILRAMGDLERLSGRACAGHASPRDLIAISEGLKKLPRLKSIVKLF-KYEIP- 486 Query: 416 ELRGAVEKLKKLPQSL---EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSK 472 +LK + L +S L + P +GG + DG D LD R+L D Sbjct: 487 ---SWTNQLKNIDNELLELADLISFKLVQNPPLNTSEGGIIHDGVDNVLDGLRNLIDDYS 543 Query: 473 RIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNL 532 + +LK + +KI NLKI+ + N GY+I + S ++ + +I RQT++N Sbjct: 544 DWLNQEELKERKISKISNLKIQFHKNFGYYISINKSKVNL------APAHWIKRQTLTNE 597 Query: 533 TRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIAL 592 R+ T E+ + E++I N A E E F + N + +++ + + ++ IA ID + L Sbjct: 598 ERYVTTEIKNRESKIFQVKNRAAAKEYELFCEVRNLVSAKTKRIRSVAKAIACIDALLGL 657 Query: 593 AILAKEQNYCRPIIDNSTNFI------VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPND 646 AI + E N+ +P I TN + GR+PIVE+ L +++ FI+ND + Sbjct: 658 AITSLENNFIKPTISPITNSTDQQSTKIIGGRNPIVEQLL---TNRKFISNDILFN---- 710 Query: 647 KNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNL 706 N KL +LTGPN GKS F+RQ LI I+AQ+GS+VPAS A I IVD++F+R+G+ D+ Sbjct: 711 -NKQKLIILTGPNASGKSCFIRQIGLIQILAQIGSFVPASKADIQIVDRIFTRIGAVDDQ 769 Query: 707 ASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRG 766 ++G+STFMVEM ETASILNQAT+ S V+LDEIGRGT+T DGLSIAW+ EYL + C Sbjct: 770 STGQSTFMVEMSETASILNQATSNSLVLLDEIGRGTSTFDGLSIAWSVSEYLAKKIVCNT 829 Query: 767 LLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPN 826 + ATH+HEL L + N + V + + F HK+ G A+ SYGI+ KLAG+P Sbjct: 830 IFATHYHELNYLKHTNTNVENFQVLVKQKKDQLFFCHKIEKGGANKSYGIEAAKLAGVPK 889 Query: 827 TVISRAYDILKTFEK 841 VI++A +L EK Sbjct: 890 EVINKAILVLDYLEK 904 >gi|260583988|ref|ZP_05851736.1| DNA mismatch repair protein MutS [Granulicatella elegans ATCC 700633] gi|260158614|gb|EEW93682.1| DNA mismatch repair protein MutS [Granulicatella elegans ATCC 700633] Length = 862 Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust. Identities = 304/896 (33%), Positives = 474/896 (52%), Gaps = 77/896 (8%) Query: 29 MRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPV 88 M QY IK PD L+FYR+GDFYELF+DDAL A+R L ITLT R K+ IPMCGVP Sbjct: 1 MEQYFSIKEQYPDCLLFYRLGDFYELFYDDALEAARLLEITLTSRNKNAEDPIPMCGVPH 60 Query: 89 HTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPT 148 H+A YI+ LI+ G ++AICEQ+E P + K +V+R+VV+++TPGT TE Sbjct: 61 HSAKEYIRTLIEYGKKVAICEQLEDP-----KFTKGMVKRDVVQVLTPGTYTEYS--QQH 113 Query: 149 DSNYLMAVARIRTE-WAIAWIDISTGIFK-ISTSNHDRLISDIMRIDPREII----FSEK 202 +NYL+A+ + + +A+ ++D++TG K + + + S+ + RE++ FS + Sbjct: 114 ANNYLVALKPLAQDSYALGYVDVATGELKGTCVQSMEEVRSECSSLKTRELVKVGDFSSE 173 Query: 203 ELSHA--EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 L + L TL + + + FD + + D Y + Sbjct: 174 ALEEMCLYFDILPSTLATEDIQKGS--FDALLEDIEQEDVYEVL---------------- 215 Query: 261 AAAISYIKKTQ---MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLK 316 +SY+ KTQ + Y ER+ LF++ A+ NLE+ T+ ++Q SL Sbjct: 216 EGLLSYLAKTQKKSFTHLQKASYYERD---FYLFMNYEAKRNLELTSTIRTQQKQGSLYW 272 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D + T G RL + I PL T I R D + Q+ + LK D+ R Sbjct: 273 FLDETQTAMGARLLKQWIEKPLVLQTDIEERHDLVESLTQHYFERIDFIEALKGVYDLER 332 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 + ++ G +D+ ++ + + + + + + + ++L +P+ E+ + Sbjct: 333 IVGKVSFGTANARDLLQLKQTL-AKVPVFRAIADSLNHPKWQKLKQQLHAIPELYER-IE 390 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + +D P DG ++ G LD R K IA LQ E T IK+LKI +N Sbjct: 391 RAIDEDAPVSLSDGNIIKKGYHEKLDLYRETMAHGKEWIAQLQQTEREATGIKSLKISYN 450 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+IEVT ++ S L R+ +QT+SN RF T EL + E I A + L Sbjct: 451 KVFGYYIEVTKANLSQL-----DDSRYERKQTLSNAERFITPELKEKEALILEAEEKSSL 505 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII---DNSTNFI 613 +E E F + + +E L ++ +A ID+ + + +++ RP I D S I Sbjct: 506 LEYELFVAVREEVKTYTEQLQELAKAVATIDVLQSFSTVSEAYQLTRPTISLMDRSLEII 565 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 DGRHP+VEK + + S ++ N +S P D + L+TGPNM GKST++RQ AL Sbjct: 566 --DGRHPVVEKVMGRSS---YVPNSIQMS-PEDH----ILLITGPNMSGKSTYMRQLALC 615 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 VI++Q+G +VPA+ A I I K+F+R+G+AD+L SG+STFMVEM+ET + L QA S + Sbjct: 616 VILSQIGCFVPATSAKIPIFTKIFTRIGAADDLISGQSTFMVEMMETNTALRQADPTSLL 675 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 + DEIGRGTAT DG+++A A I Y+HE + L +TH+HELT LS + + N + Sbjct: 676 LFDEIGRGTATYDGMALAHAIIGYIHEHLTAKVLFSTHYHELTALSDTYEDLKNVHVGAI 735 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN---QKDM 850 + + ++FLHK++ G AD SYGI V KLAGLP+++++ A +IL E N Q+D Sbjct: 736 EKDGEVVFLHKIMEGPADKSYGIHVAKLAGLPSSLLNHAENILTILETNSQANISLQEDA 795 Query: 851 RLYYPEIQTKESKNNL--------------SKNDKLFVEKIKCLNLDEMSPLTALK 892 + E++ E+ + S D+ +E+IK + + ++PL AL+ Sbjct: 796 PVEKAEVEIVETSATVEVPRVESEQLDLFTSNLDQEVLEEIKSVRVMNLTPLQALQ 851 >gi|168334525|ref|ZP_02692686.1| DNA mismatch repair protein MutS [Epulopiscium sp. 'N.t. morphotype B'] Length = 846 Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust. Identities = 300/890 (33%), Positives = 491/890 (55%), Gaps = 67/890 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP-MC 84 TPM++QY EIK D L+F+R+GDFYE+FFDDA+ AS+ L +TLTKR G+D P MC Sbjct: 2 TPMLKQYFEIKKKYSDCLLFFRLGDFYEMFFDDAVFASQELELTLTKRN---GEDSPPMC 58 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H + YI KL G+++AICEQIE+ E+K +V R+VVR++TPGT Sbjct: 59 GVPHHNVDSYILKLTNKGYKVAICEQIENSSESK-----GIVMRDVVRVITPGTS----- 108 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST--SNHDRLISDIMRIDPREIIFSEK 202 L + NY+ V +++ +A+++ +++ +K N ++I I + P E + + + Sbjct: 109 LESANDNYIACVVKLKNSYALSFCNVTACEWKAIQIEKNSKQVIDAISKHMPVECLINTE 168 Query: 203 ELSHAEYKSLFETLGNVAVAQP---------NVFFDHSISESRIADYYNITTVDTFGSFS 253 + K L + + + P N F++S+ + D V GS Sbjct: 169 VMGSDIEKFLIQECNALVQSLPEITNLKEELNNHFENSVLQRINTD----VLVLCVGSLL 224 Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQ 312 + A ++ ++ Q+ I +++ + NLE++ TL S++ Sbjct: 225 HYLTSVAKNSLIHLTDLQLYT-----------IAENMYLGTEVIKNLELIETLHDKSKKG 273 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 SLL +D ++T G R I +PL D ++I R D++ +QN L + +++ LKS Sbjct: 274 SLLSILDKAVTPMGKREIKNWILTPLLDKSQILLRQDAVAELVQNIFLASDLREYLKSIY 333 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE 432 D+ + ++++ KD+ V++D I I +L + EL L L + + Sbjct: 334 DLEKIVAKIGYKTCNAKDLIVLKDSILYLAAIQDL-IATTTSXELSTISRNLDIL-EDIY 391 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 ++S +++D P +DGG ++ + + + + ++D+ + ++ + E T IKNLK Sbjct: 392 TLINSAINEDAPLSIKDGGIIKKTYSSEVFKLKDIKDKGASWLVEIEARERESTGIKNLK 451 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 IK+N GYF+EVT+S+ +++ + + +QT+ N R+ T EL D+E +I NA + Sbjct: 452 IKYNKVFGYFLEVTNSNKNLVP------EHYTRKQTLVNCERYITEELKDIEEQILNADS 505 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 +E + F + I + + S+ IA +D I+ + +A NY RP I + Sbjct: 506 LICQLEYDIFMEVVQKIETNIKRILETSKNIAKLDAYISXSAVAISXNYVRPTITTNGEI 565 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 + GRHP+ E + QS FI+ND +C +++ ++ L+TGPNMGGKST+++Q L Sbjct: 566 NIAAGRHPVAETIIGTQS---FISND---TCLGQEDT-QIALITGPNMGGKSTYMKQVGL 618 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 IVI+AQ+GS+VPA+ A I +VDK+F+RVG++D+L SG+STFMVEM E ++IL AT+ S Sbjct: 619 IVILAQIGSFVPATSAEISVVDKIFTRVGASDDLISGKSTFMVEMSEVSNILINATSNSL 678 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATL 790 +ILDEIGRGT+TLDGLSIA A IEY+ N+ + L +TH+HEL L N + Sbjct: 679 LILDEIGRGTSTLDGLSIAQAVIEYI-AINKVGAKTLFSTHYHELPQLVNQYANIKNYCV 737 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF--EKLYHHNQK 848 V + +IFLHK+ G+A S+G++V KLAGLP V+ RA IL EKL N + Sbjct: 738 TVQQNKNSLIFLHKIAEGVAGKSFGLEVAKLAGLPVDVLHRAGQILSKLDAEKLNATNSE 797 Query: 849 DMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + +S + S + V I +N+ +++P A++T+ +K Sbjct: 798 VLPAF------SQSYDIESHDYDDLVNTINEINIMDLTPAKAIETIQQLK 841 >gi|87301627|ref|ZP_01084467.1| DNA mismatch repair protein [Synechococcus sp. WH 5701] gi|87283844|gb|EAQ75798.1| DNA mismatch repair protein [Synechococcus sp. WH 5701] Length = 937 Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust. Identities = 287/849 (33%), Positives = 463/849 (54%), Gaps = 68/849 (8%) Query: 27 PMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPMC 84 P++R Y+E+K+ +P+ ++ YR+GDFYE FF+DA+ SR L +TLT + GK +G+ +PM Sbjct: 117 PVLRHYVELKAAHPERVLLYRLGDFYECFFEDAIRVSRLLELTLTGKEGGKRIGR-VPMA 175 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G+P H A Y +L++ G +A+C+Q+ES +L+RR + R++TPGT+ E+ + Sbjct: 176 GIPHHAAERYCGELVRRGLAVALCDQLES-----TPAPGALLRRGITRVLTPGTVLEEGM 230 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSEKE 203 L+ +N+L AV + +W +A D+STG F++ D+L D++++ P E+++ E Sbjct: 231 LAARRNNWLAAVVLEQGQWGLAVADVSTGEFQLMQRQGSDQLHQDLLQLQPAELLWPTAE 290 Query: 204 LSHAEY--KSLFETLGNVAVAQPNVFFDHSISESR--IADYYNITTVDTFG-SFSQVEKT 258 + +S+ T P ++ E+R + + + + +++ G + + Sbjct: 291 SGEPAWAPESIHRT--------PLPLTPFTLPEARRTLLERFGLASLEGLGLGEAPLALR 342 Query: 259 AAAAAISYIKKTQM------------------VNKPTIGYPEREDIQSTLFIDSAARSNL 300 AA + Y+ TQ +++PT+ +R D L +D+ R NL Sbjct: 343 AAGGLVRYLDDTQPATDDPADTTTATTASRIPLDRPTL--QQRGD---QLVLDAQTRRNL 397 Query: 301 EILRT-LSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPI 359 EI +T G + SLL +D ++T G R + +PL D I R + I +Q Sbjct: 398 EITQTQRDGQFQGSLLWALDRTMTAMGARALRRWLEAPLMDLAAIERRQEGIAVLVQQRP 457 Query: 360 LINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI----RSGINILNLFLKNDLPE 415 L ++++L+ D+ R R G +D+ + DG+ R + P Sbjct: 458 LRLALRRLLRPMGDLERLSGRAGAGSASARDLVSLADGLERLPRLAALLEPAAAAVFAP- 516 Query: 416 ELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRII 475 L+ A +L +L + TL + P +GG + DG D LD R+ D + + Sbjct: 517 -LQQAEPELAQLAALVRHTLV----EAPPLSLSEGGLIHDGVDGRLDGLRNRLDDQDQWL 571 Query: 476 ASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRF 535 A+ + + + I L+++ + + GYF+ V+ + A + + +I RQT++N RF Sbjct: 572 AAQEQEERRRSGIPTLRLQFHRSFGYFLSVSRARAERVP------EHWIRRQTLANEERF 625 Query: 536 TTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAIL 595 T EL E RI A E E F L + E + + A++ +A +D +LA + Sbjct: 626 VTPELKAREGRILQLRARAAQREYELFSQLRQQVGELAGPIRQAARRVAGLDALASLAEV 685 Query: 596 AKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLL 655 A YCRP +D+S V+ GRHP+VE+ L ++S F AND L ++ L +L Sbjct: 686 AACHGYCRPQLDHSRCLQVEAGRHPVVEQLLVEES---FSANDLHL---GEQGRPDLVVL 739 Query: 656 TGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMV 715 TGPN GKS +LRQN L+ +MAQ+GS++PA A +G+ D++F+RVG+ D+LASG+STFMV Sbjct: 740 TGPNASGKSCYLRQNGLLQLMAQIGSWIPARSARLGLADRIFTRVGAVDDLASGQSTFMV 799 Query: 716 EMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHEL 775 EM ETA+IL+ AT++S V+LDEIGRGTAT DGLSIAWA E+L R R + ATH+HEL Sbjct: 800 EMAETANILHHATDRSLVLLDEIGRGTATFDGLSIAWAVAEHLAAGLRARAVFATHYHEL 859 Query: 776 TDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI 835 +L+ L N + V ++ + ++FLH+V PG A SYGI+ +LAG+P V+ RA + Sbjct: 860 NELAALLPGVANYQVLVEETGDHLLFLHQVRPGGASRSYGIEAARLAGVPPQVVQRARQV 919 Query: 836 LKTFEKLYH 844 L E H Sbjct: 920 LGRIEANSH 928 >gi|116333843|ref|YP_795370.1| DNA mismatch repair protein [Lactobacillus brevis ATCC 367] gi|122269470|sp|Q03R33|MUTS_LACBA RecName: Full=DNA mismatch repair protein mutS gi|116099190|gb|ABJ64339.1| DNA mismatch repair protein MutS [Lactobacillus brevis ATCC 367] Length = 892 Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust. Identities = 284/826 (34%), Positives = 451/826 (54%), Gaps = 49/826 (5%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S+TPMM QY +IK PD+ +FYR+GDFYE+F +DA+ S+ L +TLT R IPM Sbjct: 5 STTPMMEQYQKIKDQYPDAFLFYRLGDFYEMFNEDAVKGSQLLELTLTTRSHSAKNPIPM 64 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVP YI L+ G+++AICEQ+E P AK +V+R V++LVTPGT T+ Sbjct: 65 CGVPHKAVQSYIDILVDQGYKVAICEQMEDPKLAK-----GMVKREVIQLVTPGTQTDTG 119 Query: 144 LLSPTDSNYLMAVARIRT-EWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSE 201 +NYL A+ + E+ +A+ D+STG K + + D +++++M + +E++ Sbjct: 120 AAGAKRNNYLTALTLADSGEYGLAYTDLSTGELKAAAITGEDAVLNELMSLQTKEVVV-- 177 Query: 202 KELSHAE-YKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 + + AE + + LG + Q D + S I+ T D + Sbjct: 178 -DTTVAEGLRQRMKQLGMMISTQ-----DAIQTSSEISYVEQDLTTDLL-------RQVV 224 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDI-QSTLFI--DSAARSNLEILRTL-SGSREQSLLK 316 ++Y+ TQ K ++ + +R + Q T F+ D A+++NLE+ + L + + +LL Sbjct: 225 GVLVTYVTVTQ---KRSLAHLQRAVVYQPTAFLKMDHASQTNLELTQNLRTKKKSGTLLW 281 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D + T GGRL + + PL D +I R + + + N +Q+ L D+ R Sbjct: 282 LLDETKTAMGGRLLKQWLDRPLIDRQQIENRQARVAALLDHYFERNSLQEELVKVYDLER 341 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKT 434 R+ G +D+ ++ + I + + D P + ++ + + ++ Sbjct: 342 LAGRVAFGSVNGRDLIQLQTSLEQVPQIQHTIEELDEPVFDTTLAGLDPVSDVADAIR-- 399 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + + + P DGG +RDG +A LDE R K +A L+ E T I NLKI Sbjct: 400 --AAIVPEPPLSVADGGVIRDGFNAQLDEYRDAMRNGKTWLAELEAHEREVTGINNLKIG 457 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N+ GY+IEVT + S L DR+ +QT++N RF+T EL + E I A + Sbjct: 458 YNHVFGYYIEVTKVNLSKL-----PADRYERKQTLTNAERFSTPELKEKERLILEAEEKS 512 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + +E + F L + L + VIA +D+ + A+++++ ++ +P + + + Sbjct: 513 VALEYKLFVELREQVKAAITRLQKLAAVIASLDVLQSFAVVSEDYHFVQPKLVSGHQLKI 572 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 GRHP+VEK L +QS ++ ND + + + L+TGPNM GKST++RQ AL V Sbjct: 573 TQGRHPVVEKVLGRQS---YVPNDVTMD-----DQTNILLITGPNMSGKSTYMRQLALTV 624 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 IMAQMG +VPA A + I D++F+R+G+AD+L SG+STFMVEM E L+ AT S ++ Sbjct: 625 IMAQMGCFVPAEAAEMPIFDQIFTRIGAADDLISGQSTFMVEMQEANRALSHATANSLIL 684 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 DEIGRGTAT DG+++A A IEY+H + L +TH+HELT L +SLK+ N + + Sbjct: 685 FDEIGRGTATYDGMALAQAIIEYVHNRVHAKTLFSTHYHELTALDESLKQLKNVHVGAVE 744 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + ++FLH++ PG AD SYGI V KLAG+P ++ RA IL E Sbjct: 745 RDGDLVFLHQMQPGPADKSYGIHVAKLAGMPTKLLQRAEVILTDLE 790 >gi|154188|gb|AAA27167.1| mismatch repair protein (MutS) [Salmonella enterica subsp. enterica serovar Typhimurium] gi|565092|gb|AAA80578.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] Length = 853 Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust. Identities = 295/899 (32%), Positives = 473/899 (52%), Gaps = 69/899 (7%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 +++ + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG Sbjct: 5 FDKDFSNHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASA 64 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G+ IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPG Sbjct: 65 GEPIPMAGIPHHAVENYLAKLVNQGESVAICEQIGDPATSK-----GPVERKVVRIVTPG 119 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPRE 196 T++++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E Sbjct: 120 TISDEALLQERQDNLLAAIWQDGKGYGYATLDISSGRFRLSEPADRETMAAELQRTNPAE 179 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 ++++E AE +L E + ++ I +R T D G F VE Sbjct: 180 LLYAE---DFAEM-ALIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VE 230 Query: 257 KT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 AA + Y+K TQ + P I E Q ++ +D+A R NLEI + L+G E Sbjct: 231 NASRGLCAAGCLLQYVKDTQRTSLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGVE 290 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 +L +D ++T G R+ + P+ ++ + R +I ++ +Q +L+ Sbjct: 291 NTLAAVLDCTVTPMGSRMLKRWLHMPVRNTDILRERQQTIGALQDT---VSELQPVLRQV 347 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEEL--------RGAVEK 423 D+ R+ P + RS N L +L +L + V+K Sbjct: 348 GDLERT----------PCASGAAQPSARSRPNASRLPAAAELHAQLETVDSAPVQRCVKK 397 Query: 424 LKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 P + +L+ + + G LDE R+L D + + L+++ Sbjct: 398 WAISPSCATSWNAPLLTRR--RYWSRRRVIAPGYHEELDEWRALADGATDYLDRLEIRER 455 Query: 484 EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDL 543 E T + LK+ +N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 456 ERTGLDTLKVGYNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPELKEY 509 Query: 544 ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCR 603 E+++ + AL +E + ++ L + ++ L ++ +A +D+ + LA A NY Sbjct: 510 EDKVLTSKGKALALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLAERAWTLNYTC 569 Query: 604 PIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 P + + +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGGK Sbjct: 570 PTFTDKPGIRITEGRHPVVEQVLNE----PFIANPLNLS-----PQRRMLIITGPNMGGK 620 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 ST++RQ ALI ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+I Sbjct: 621 STYMRQTALIALLAYIGSYVPAQNVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANI 680 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLK 783 L+ AT S V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ Sbjct: 681 LHNATENSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKME 740 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY 843 N L + + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 741 GVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESIS 800 Query: 844 HH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + Q D T+ S + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 801 PNAAATQVD--------GTQMSLLAAPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 851 >gi|11514100|pdb|1E3M|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With A G:t Mismatch gi|11514101|pdb|1E3M|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With A G:t Mismatch Length = 800 Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust. Identities = 293/840 (34%), Positives = 439/840 (52%), Gaps = 62/840 (7%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TP +QY+ +K+ +P+ L+FYR GDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPXXQQYLRLKAQHPEILLFYRXGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IP G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPXAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETXAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAE-XSLIEG---RRGLRRRPLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITXEREQDSIIXDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPXGSRXLKRWLHXPVRDTRVLLERQQTIGA-LQD--FTAGLQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A R + LPE LR +E + P Sbjct: 348 LERILARLALRTARPRDLARXRHAFQQ------------LPE-LRAQLETVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKXGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + + RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHLAPIN------YXRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L + PFIAN +LS + ++TGPN GG Sbjct: 569 CPTFIDKPGIRITEGRHPVVEQVLNE----PFIANPLNLSPQR-----RXLIITGPNXGG 619 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST+ RQ ALI + A +GSYVPA IG +D++F+RVG+AD+LASGRSTF VE ETA+ Sbjct: 620 KSTYXRQTALIALXAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFXVEXTETAN 679 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V+ DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + Sbjct: 680 ILHNATEYSLVLXDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKX 739 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N L + + I F H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 740 EGVANVHLDALEHGDTIAFXHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 799 >gi|216263544|ref|ZP_03435539.1| DNA mismatch repair protein MutS [Borrelia afzelii ACA-1] gi|215980388|gb|EEC21209.1| DNA mismatch repair protein MutS [Borrelia afzelii ACA-1] Length = 862 Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust. Identities = 290/826 (35%), Positives = 464/826 (56%), Gaps = 51/826 (6%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K+ TPMMRQY++IK D+++F+R+G+FYE+FFDDA+ AS+ L +TLTKR +++P Sbjct: 3 KNVTPMMRQYLDIKKKYKDAIIFFRVGNFYEMFFDDAIEASKLLNLTLTKR-----ENVP 57 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP HT+ YI+KLI ++AICEQ A + + R VV ++TPG + ++ Sbjct: 58 MCGVPYHTSKEYIRKLILFDKKVAICEQ------AANSTSVGPLEREVVEVITPGVIVDE 111 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDIST---GIFKISTSNHDRLISDIMRIDPREIIF 199 L+ +NYL+A++ + ++ ++ID+ST GI S ++L D+ + P+EII Sbjct: 112 DFLNDDVNNYLVAISDYKNYYSFSYIDLSTSSLGIMFYENSFFEKLKRDLEKYSPKEIIV 171 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 SE + EY + P D ++ I +++NI + + G F + EK Sbjct: 172 SEN--FYYEYSEKLNLNRFLINRVPAWHLDKDVAIKTIKEHFNILGLSSLG-FDE-EKPY 227 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQS---TLFIDSAARSNLEILRTLSG-SREQSLL 315 + I + K + ++ DI + +F+D + NLE+++ + S + SL Sbjct: 228 YISIFLIINHIKNNLKNLLSNIDKIDINNDSLYMFLDDVTQVNLELVKNNNDFSSQYSLY 287 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 ++ T G RL E I +P+ + ++INTRLD + FF +N L +++ + DV Sbjct: 288 SVLNDCKTAMGKRLLREFILNPILNISEINTRLDHVEFFCKNISLTMTLREAFVNIWDVE 347 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEK--LKKLPQSLEK 433 R +SR+++ R KD I + + LF K++ E+ + K+ + Sbjct: 348 RIISRIQMKRYIKKDFLFIEKSLSVFFLVKKLFDKHNFDYWNFDKFEEDSISKVYFLINS 407 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 +SS SD+L ++ G D LD + L+ + + I +KI NLKI Sbjct: 408 AISSS-SDEL---------IKRGYDLKLDSLKDLKINANKYIDEYLESERLLSKINNLKI 457 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 + NN G F EVT S+ + + F+ QT+++ R+ T +LI LE I NA +S Sbjct: 458 RKTNNRGLFFEVTKSNYA------QVPPHFMESQTLNSSKRYKTEKLISLEANINNAEDS 511 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + E E F+ +++ +++ ++ L ++ A ID+ + LAK+ Y RPI+ S Sbjct: 512 VVAFEQEIFDEIASNVVKHNKVLKKVAEFFAYIDLVVNFGYLAKKNEYKRPILTCSKEIF 571 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLW-LLTGPNMGGKSTFLRQNAL 672 ++ RHP+VE +K +++ F N + N K + L+TGPNM GKST+LRQ AL Sbjct: 572 LEKSRHPVVEHYVK--NTEIFTENFVKI------NKEKYFCLITGPNMAGKSTYLRQVAL 623 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 I +MA +GS+VPAS A IGI DK+F R+G++DNLA G STF+VEM ETA+IL AT +S Sbjct: 624 ITLMAHIGSFVPASRAVIGITDKIFCRIGASDNLAKGESTFLVEMNETANILRNATEKSL 683 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 +I+D +GRGT+T DGL+IA++ IEY+ E + R L ATHFHEL+ ++ K F N ++++ Sbjct: 684 IIMDGVGRGTSTNDGLAIAYSIIEYILEYIKARSLFATHFHELSAINH--KAFINLSMKI 741 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKT 838 ++FL +V + +SYGI V ++AGLP V+ RA ILK+ Sbjct: 742 EKQGNELVFLREVEEKPSLNSYGIYVARIAGLPLRVVDRANVILKS 787 >gi|229162704|ref|ZP_04290661.1| DNA mismatch repair protein mutS [Bacillus cereus R309803] gi|228620586|gb|EEK77455.1| DNA mismatch repair protein mutS [Bacillus cereus R309803] Length = 890 Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust. Identities = 273/833 (32%), Positives = 468/833 (56%), Gaps = 57/833 (6%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 +K TPM++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R I Sbjct: 1 MKQYTPMIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E Sbjct: 61 PMCGVPHHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMME 115 Query: 142 DQLLSPTDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREII 198 + + ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ Sbjct: 116 GRTIDEKENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIV 175 Query: 199 FSEKELSHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFS 253 + S E L ETL A A P +H + N++ + Sbjct: 176 V-DSTFSKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLIKAIG 225 Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGS 309 ++ +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + Sbjct: 226 RL--------FNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKE 274 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 + SLL +D + T GGR+ + + PL K+ RL+ + F+ + L +++ LK Sbjct: 275 KTGSLLWLLDKTKTAMGGRMLKQWMERPLIQKEKVEERLEMVETFVNDYFLREDLKEKLK 334 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKL 427 D+ R ++ G +D+ +R + IL L N L + Sbjct: 335 EVYDLERLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPC--- 391 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 +SL + L + ++ P +DG ++DG + LD+ R + K IA L+ + + T Sbjct: 392 -ESLTELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITG 450 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 +K+LKI +N GY+IEVT ++ + L + R+ +QT++N RF T EL + E I Sbjct: 451 VKSLKIGYNRIFGYYIEVTKANLAAL-----PEGRYERKQTLANAERFITDELKEKETLI 505 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 A + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 506 LEAEEKIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLT 565 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++ Sbjct: 566 TKREIFIKDGRHPVVEKVL---NGKLYVPNDCIMPEKMD-----VFLITGPNMSGKSTYM 617 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ AL+ +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A Sbjct: 618 RQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANA 677 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 + +S ++ DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L +SL + N Sbjct: 678 SERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLDQLKN 737 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 738 VHVSAIEENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 790 >gi|32129770|sp|Q9PCR2|MUTS_XYLFA RecName: Full=DNA mismatch repair protein mutS Length = 868 Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust. Identities = 300/892 (33%), Positives = 481/892 (53%), Gaps = 46/892 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 + + TP+M+QY K+ PD L+F+RMGDFYELF DA A+R L ITLT+RG G Sbjct: 9 KGMAEHTPLMKQYFAAKAEYPDLLLFFRMGDFYELFHQDARKAARLLDITLTQRGSSGGA 68 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVPVH Y+ +LI +G +AICEQI P AK LV R VVR+VTPGT+ Sbjct: 69 PIPMAGVPVHAYEGYLARLIALGESVAICEQIGDPGLAK-----GLVERKVVRIVTPGTI 123 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREII 198 T++ LL LMA++R + + +AW D++ G F ++ N + L +++ R++P E++ Sbjct: 124 TDEVLLEERRDTLLMALSRSKNCYGLAWADLAGGRFLVNEVNSEEALEAELARLEPAELL 183 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 +++ + EY N +P FD ++ ++ + + FG + + T Sbjct: 184 LPDED-AWPEYLQQR----NGVRRRPPWLFDADSGRRKLLAFFKLHDLSGFGIENNPQAT 238 Query: 259 AAAAAIS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AAA A+ YI++TQ P + E + + +++A R +LE+ + G +LL Sbjct: 239 AAAGALLGYIEETQKQRLPHLTSITMETVGEAITMNAATRRHLELDTRVDGESRHTLLGV 298 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D ++T GGRL + PL + R ++ I L N + + + D+ R Sbjct: 299 LDSTVTPMGGRLLRRWLHRPLRLREVVRQRHAAVGSMIDRD-LDNKLMETFRRLGDMERI 357 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 L+R+ + P+DI+ +RD + + L +D P LR +L + S L Sbjct: 358 LTRVALRSARPRDISTLRDSLSLLPRLRELLNASDSPR-LRVLYAELGE-HDSTASLLVK 415 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 +++ P DGG + D LDE R L + + + + L+ + E + I LK+ +N Sbjct: 416 AVAEQPPLKLTDGGVIASEYDVELDELRKLSNNADQFLIDLETRERESSGISTLKVGYNR 475 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IE++ A ++ + RQT++N R+ T EL E+++ +A + AL+ Sbjct: 476 VHGYYIEISKGQAD------KAPVHYTRRQTLTNAERYITEELKAFEDKVLSARDRALVR 529 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E +E L + + Q E L + ++ +D+ + A A+ ++ RP +++++ ++ G Sbjct: 530 EKLLYEQLLDTVGAQLEPLKRCAAALSELDVLVCFAERAQTLDWVRPELEHTSCLHIEGG 589 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE +Q+ F ND DL ++ ++TGPNMGGKST++RQNALIV++A Sbjct: 590 RHPVVEAVREQR----FEPNDLDLHPER-----RMLVITGPNMGGKSTYMRQNALIVLLA 640 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GSYVPAS A IG +D++ +R+G+ D+LA G+STFM+EM ET+ IL+ AT QS V++DE Sbjct: 641 YIGSYVPASRALIGPIDRIMTRIGAGDDLARGQSTFMLEMTETSYILHHATAQSLVLMDE 700 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK-----SLKRFHNATLQV 792 IGRGT+T DGL++A A +L NRC L ATH+ ELT L+ L N Sbjct: 701 IGRGTSTYDGLALADAVARHLAHINRCYTLFATHYFELTALADETYEGGLSGIANVHFDA 760 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 + +E ++F+H V G A+ S+G+QV LAGLP ++ A L E Q+ Sbjct: 761 VEHSERLVFMHTVKDGPANRSFGLQVAALAGLPAAAVAHARRRLAELE------QRGRES 814 Query: 853 YYPEI-----QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + EI + + + E + L+ DE++P AL+ LY +KA Sbjct: 815 HVSEITPLALDAPQQCSLFASAPSAAQEALVALHPDELTPKQALEALYRLKA 866 >gi|99036007|ref|ZP_01315047.1| hypothetical protein Wendoof_01000101 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 672 Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust. Identities = 254/669 (37%), Positives = 400/669 (59%), Gaps = 51/669 (7%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TP+M QY+ +K+ D L+FYR+GDFYELFFDDA+ A++ L I LTKRG G++IPMC Sbjct: 26 NTPVMEQYLNLKAQYKDHLLFYRLGDFYELFFDDAIKAAKLLNIVLTKRGNSCGQEIPMC 85 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H++ Y+ KLI +G ++AIC+Q+E+ EAKKRG KS+V+R+VVR+VTPGT+ ED L Sbjct: 86 GVPAHSSESYLHKLIDLGFKVAICDQLETADEAKKRGYKSIVKRDVVRVVTPGTIIEDSL 145 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 L +NYL ++ E+AI+W+++STG F + ++ L SD++RI PRE++ SEK Sbjct: 146 LEDKSNNYLASIVEQNDEYAISWLELSTGKFFHTLTSLKALDSDLLRISPRELLISEKFT 205 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 + +S+ + FF++S S + ++Y I + + G+FS+VE A A + Sbjct: 206 EDEKIRSILKNYKISITQHAQSFFEYSKSHRTLCEFYKIRELGSIGNFSKVEIMACGALL 265 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 Y++ TQ + P + +P+ Q+ + ID++AR NLE+ T G ++ SL+ ID+++T Sbjct: 266 EYVRVTQRGSIPRLEFPKTYKQQNFMLIDASARRNLELFSTQFGEKKGSLISVIDHTVTA 325 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 +GGRL + +ASPL S IN RL + FF+ N I++IL + PD+ RSLSRL +G Sbjct: 326 SGGRLLKQMLASPLACSKAINLRLSTAQFFVNNHDSRRKIREILSNIPDIERSLSRLILG 385 Query: 385 RGEPKDIAVIRDGIRSGINILNLFLK------NDLPEEL----------RGAV------E 422 RG PKD+ +++ G+ + + K LP++ R + Sbjct: 386 RGSPKDMNLLKIGLGKTLELSEFLCKIESGENGSLPQQYVIQTEIQPASRAGITVKSDES 445 Query: 423 KLKKLPQSL-------EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRII 475 +L + +SL E S++L ++L + K +GGF+ ++ L E + + S +++ Sbjct: 446 ELSTIHKSLGNHKDLFELLNSAILDNNLSSVK-EGGFIHSKYNSELSELSYILNNSNKLV 504 Query: 476 ASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRF 535 L+ Y + T I LKI HNN LGY++EV+++ + D FIHRQ+++N R+ Sbjct: 505 TKLRESYRDLTGIAALKILHNNILGYYVEVSANHKI-------TSDIFIHRQSLANSMRY 557 Query: 536 TTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAIL 595 TT EL +LEN+I A ++A+ +E++ F L + + ++SE + A+ +A +DI A A L Sbjct: 558 TTNELKELENKILTARDAAIGLEMKIFSELCSEVAKESEKIALAANALAKLDIRTAFAEL 617 Query: 596 AKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLL 655 A + NY +PIID+S F + GRHP+VE K FIAN +L+ + L+ Sbjct: 618 AVQNNYVKPIIDDSKEFNICSGRHPVVEVNDK------FIANSINLA--------GIHLI 663 Query: 656 TGPNMGGKS 664 TGPNM GKS Sbjct: 664 TGPNMAGKS 672 >gi|21672681|ref|NP_660748.1| DNA mismatch repair protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25090728|sp|Q8K9D2|MUTS_BUCAP RecName: Full=DNA mismatch repair protein mutS gi|21623320|gb|AAM67959.1| DNA mismatch repair protein MutS [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 805 Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust. Identities = 284/822 (34%), Positives = 461/822 (56%), Gaps = 58/822 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+ +KS P+ L+FY+MGDFYELF++DA SR L ITLTK+G IPM G Sbjct: 14 TPMIKQYLSLKSQYPNMLLFYQMGDFYELFYEDAKRVSRLLKITLTKKGNSNNNIIPMAG 73 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP HTA +Y+ KL+K+G IA+C+QI+ KK L+ R VVR++TPGT+T++ L Sbjct: 74 VPCHTAEYYLSKLVKMGESIAVCDQIKDVYSEKK-----LLTRQVVRVITPGTITDEAFL 128 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTS-NHDRLISDIMRIDPREIIFSE--K 202 N++ AV + ++A A +DIS G F +S + + L+S+I R +P E+++ E + Sbjct: 129 EENKDNFIAAVWKENNKFAYAILDISLGFFGVSEHFDRNSLLSEIERTNPTELLYPENFE 188 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAA 261 ++ +K + +P + FD IS + + + ++ FG + A Sbjct: 189 DMLLISHKKCIQ-------KRPLLDFDIKISYKLLTLQFKTSNLNGFGIKKNHFVIRPAG 241 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 I+YIK + P I + I++ +F++S+ R +LEI+ ++SG + +L ++ + Sbjct: 242 CLINYIKLMHISFLPHIRKIQFNYIENNIFMNSSTRKSLEIIESISGESKNTLSSVLNKT 301 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINP----IQKILKSSPDVPRS 377 +T GGRL + +P D + I R + L+ P IQ IL+ D+ R Sbjct: 302 VTSMGGRLLNRWLNTPSKDLSLIKNRHGMVK-------LLRPFYKEIQCILRQVSDLERI 354 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINIL---NLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 SRL + P+D +RS +NIL L LK + + + K + L Sbjct: 355 CSRLALRTALPRDFV----RMRSTLNILPDLCLILKKIKSTSINNVLMSIGKFEKILF-L 409 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L ++ +P+ RDGG + + LDE RSL+ S++ + ++K I + KI Sbjct: 410 LKKSINLTVPSSIRDGGVIACNYNKKLDELRSLKKNSQKYLQDFEVKEKSRLNIDSFKIG 469 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +NN +GY+I+V + ++ ++ QT+ N+ R++ L + E ++ +A A Sbjct: 470 YNNIVGYYIQVNKRHSHLIPHS------YLKIQTLKNVERYSVPLLKNYEKQVISAKFQA 523 Query: 555 LLIE----LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 + +E +E F+I+ + E L N++ ++ +D+ + L+ + NY P + Sbjct: 524 IFLEKTLYMELFDIIEPFL----EDLKNSAFALSELDVLVNLSERSISLNYVCPKMTKKY 579 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 + + RHP+VE L+ PFI+N DLS N ++ ++TGPNMGGKST++RQ Sbjct: 580 GITLVESRHPVVECFLEN----PFISNSVDLSKKN-----RMLIITGPNMGGKSTYMRQV 630 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI+IMA +GS+VPA YA IG++DK+F+R+GSAD++++G STFM+EM E ++IL+ AT Sbjct: 631 ALIIIMACIGSFVPAKYASIGLIDKIFTRIGSADDVSNGYSTFMMEMTEISNILHNATCN 690 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S +++DE+GRGT+ DGL++AW+ +YL N+ LL+THF ELT L K N Sbjct: 691 SLILIDELGRGTSNKDGLALAWSCSKYLMTKNKSMILLSTHFIELTKLENFFKNIKNFYF 750 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 + + I FL+K+ GI+ SYGI V L+G+P+ VI A Sbjct: 751 SAFEHDSNIAFLYKIKKGISKKSYGIAVASLSGIPDIVIQDA 792 >gi|296504268|ref|YP_003665968.1| DNA mismatch repair protein [Bacillus thuringiensis BMB171] gi|296325320|gb|ADH08248.1| DNA mismatch repair protein [Bacillus thuringiensis BMB171] Length = 890 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 274/833 (32%), Positives = 472/833 (56%), Gaps = 65/833 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R + IPMCG Sbjct: 5 TPMIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 65 VPYHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTI 119 Query: 146 SPTDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEK 202 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 120 DEKENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DS 178 Query: 203 ELSHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 S E L ETL A A P +H + N++ + ++ Sbjct: 179 SFSKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLIKAVGRL-- 227 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQS 313 +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + S Sbjct: 228 ------FNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGS 278 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T GGR+ + + PL +I RL+ + F+ + L +++ LK D Sbjct: 279 LLWLLDKTKTAMGGRMLKQWMERPLIQKERIEERLEMVETFVNDYFLREDLKEKLKEVYD 338 Query: 374 VPRSLSRLKIGRGEPKDIAVIRD------GIRSGINILNLFLKNDLPEELRGAVEKLKKL 427 + R ++ G +D+ +R I I++L+ + L ++GA Sbjct: 339 LERLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYASRL---IQGA-----DP 390 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 +SL + L + ++ P +DG ++DG + LD+ R + K IA L+ + + T Sbjct: 391 CESLTELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITG 450 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 IK+LKI +N GY+IEVT ++ + L + R+ +QT++N RF T EL + E I Sbjct: 451 IKSLKIGYNRIFGYYIEVTKANLAAL-----PEGRYERKQTLANAERFITDELKEKETLI 505 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 A + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 506 LEAEEKIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLT 565 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++ Sbjct: 566 TKREIFIKDGRHPVVEKVL---NGKLYVPNDCIMPEKMD-----VFLITGPNMSGKSTYM 617 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ AL+ +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A Sbjct: 618 RQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANA 677 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 + +S ++ DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L +SL + N Sbjct: 678 SERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLDQLKN 737 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 738 VHVSAIEENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 790 >gi|206972648|ref|ZP_03233590.1| DNA mismatch repair protein MutS [Bacillus cereus AH1134] gi|206732461|gb|EDZ49641.1| DNA mismatch repair protein MutS [Bacillus cereus AH1134] Length = 890 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 274/833 (32%), Positives = 474/833 (56%), Gaps = 65/833 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R + IPMCG Sbjct: 5 TPMIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 65 VPYHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTI 119 Query: 146 SPTDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEK 202 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 120 DEKENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DS 178 Query: 203 ELSHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 S E L ETL A A P +H + N++ + ++ Sbjct: 179 SFSKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLIKAVGRL-- 227 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQS 313 +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + S Sbjct: 228 ------FNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGS 278 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T GGR+ + + PL +I RL+ + F+ + L +++ LK D Sbjct: 279 LLWLLDKTKTAMGGRMLKQWMERPLIQKERIEERLEMVETFVNDYFLREDLKEKLKEVYD 338 Query: 374 VPRSLSRLKIGRGEPKDIAVIRD------GIRSGINILNLFLKNDLPEELRGAVEKLKKL 427 + R ++ G +D+ +R I I++L+ + L ++GA Sbjct: 339 LERLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYASRL---IQGA-----DP 390 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 +SL + L + ++ P +DG ++DG + LD+ R + K IA L+ + + T Sbjct: 391 CESLTELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITG 450 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 IK+LKI +N GY+IEVT ++ + L + R+ +QT++N RF T EL + E I Sbjct: 451 IKSLKIGYNRIFGYYIEVTKANLAAL-----PEGRYERKQTLANAERFITDELKEKETLI 505 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 A + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 506 LEAEEKIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLT 565 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 +KDGRHP+VEK L + K ++ NDC + P + + ++L+TGPNM GKST++ Sbjct: 566 TKREIFIKDGRHPVVEKVL---NGKLYVPNDCIM--PENMD---VFLITGPNMSGKSTYM 617 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ AL+ +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A Sbjct: 618 RQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANA 677 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 + +S ++ DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L +SL + N Sbjct: 678 SERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLNQLKN 737 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 738 VHVSAIEENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 790 >gi|269836848|ref|YP_003319076.1| DNA mismatch repair protein MutS [Sphaerobacter thermophilus DSM 20745] gi|269786111|gb|ACZ38254.1| DNA mismatch repair protein MutS [Sphaerobacter thermophilus DSM 20745] Length = 893 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 297/897 (33%), Positives = 473/897 (52%), Gaps = 64/897 (7%) Query: 27 PMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGV 86 P RQY+++K+ +P +++ YRMGDFYE F DDA + +R ITLT R +PM G+ Sbjct: 28 PSRRQYLDLKAQHPHAILLYRMGDFYEAFDDDARVVARDARITLTSRSFGRNGRVPMAGI 87 Query: 87 PVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLS 146 P H NHY+ +L+ GH IAI EQ+ P + LV R + R+++PGT+ E LL Sbjct: 88 PYHALNHYLARLLAHGHTIAIAEQVSEP-------GRGLVERAITRVLSPGTVGEAALLP 140 Query: 147 PTDSNYLMAVARIRTEWAIAWIDISTGIFKIS----TSNHDRLISDIMRIDPREIIFSEK 202 ++ YL ++ +AW D+STG F ++ D+L ++ R++P E + + Sbjct: 141 EGENRYLASICPFGDRIGLAWADVSTGEFAVTELSGPRARDQLAEELARLNPAECLVPDD 200 Query: 203 ------ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QV 255 E++H ++ E + F+ + + + + + ++ FG Sbjct: 201 GRADDVEVAH---RTRME----------HWRFEPERARAELTRHLGVRSLVPFGCEDLPA 247 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSL 314 AA A ++Y+++T P + E I + +D+A R NLE+ R+L +G SL Sbjct: 248 ATAAAGAILAYLERTNPALLPLLTGLRTESIDGWVGLDAATRRNLELTRSLRTGGTRGSL 307 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D + T G R + PL D +++ R + + P L I L D+ Sbjct: 308 LGMLDETRTAMGARTLRRLVGQPLRDLSELQRRQAVVAGLVARPTLRAAITSSLGGVGDL 367 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINIL-NLFLKNDLPEELRGAVEKLKKLPQSLEK 433 R + R+ G G +D + +R+ IL +L + D L +++ L Sbjct: 368 ERLVGRVTQGLGTARDFVTLGGALRAISPILASLRVSGD--PALAAFADEIDPCTDVL-- 423 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 TL +D P DG +R G LD R ++R +A L+ + E T IK+LK+ Sbjct: 424 TLVEAAVEDDP---EDGARIRAGFSPELDAAREGAMSTRRWLAGLERRERERTGIKSLKV 480 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GY+IEVT + + + D ++ +QT++ R+ T L + E RI A Sbjct: 481 GYNKVFGYYIEVTRPNLARVPGD------YVRKQTVATGERYVTAALKEAEARILAADEE 534 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 +E + L+ + + L A+ +A++D ++LA++A + RP++++S Sbjct: 535 IAALERAALARLTRDVTAATGRLLTAANRLALLDALLSLAVVADRGGWTRPVLEDSATLE 594 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + GRHP+VE +L+ ++ FIANDC L + ++ ++TGPNMGGKST+LRQ ALI Sbjct: 595 IIGGRHPVVEASLEGEA---FIANDCRLG----GEAPRVLVVTGPNMGGKSTYLRQVALI 647 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 V++AQ+GS+VPA A IG+VD++F+RVG+ D+LA G STFMVEM+ETA+IL QAT +S V Sbjct: 648 VLLAQIGSFVPAERARIGLVDRIFTRVGAQDDLAGGSSTFMVEMLETATILRQATERSLV 707 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ILDE+GRGT T DGL+IA A +E LH+ R R L ATH+ ELT L++ L N L Sbjct: 708 ILDEVGRGTGTQDGLAIAQAVLEDLHDRVRARTLFATHYLELTALAERLADVANVHLAAL 767 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH---NQKDM 850 +++E +IFL+ V PG AD +YGIQV +LAGLP V RA +L+ ++ + Sbjct: 768 ETDERVIFLYAVRPGPADRAYGIQVARLAGLPPWVADRAASVLRGLTEMRSAPPPAPAER 827 Query: 851 RLYYPEIQTKESKNNLSKND--------KLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 L P + + L+ + + + L+L ++P AL L+ +A Sbjct: 828 ELSAPRVAEDGAPYQLTLDGFTPAPSEAERLARALDSLDLTALTPREALDWLFEQQA 884 >gi|1002520|gb|AAB19235.1| MutS [Bacillus subtilis subsp. subtilis str. 168] Length = 852 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 282/890 (31%), Positives = 494/890 (55%), Gaps = 61/890 (6%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M++QY++IK+ + D+ +F+R+GDFYE+FF+DA AS+ L ITLT R + IPMCGVP Sbjct: 1 MIQQYLKIKAEHQDAFLFFRLGDFYEMFFEDAKKASQELEITLTSRDGGAAEKIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H+A+ YI++LIK G+++AICEQ E P + K +V+R VV+L+TPGT+ + + + Sbjct: 61 YHSASAYIEQLIKKGYKVAICEQTEDP-----KAAKGVVKREVVQLITPGTVMDGKGIHE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGI-FKISTSNHDRLISDIMRIDPREIIFSEKELSH 206 +++N++ +V+ + +A D++TG + + +IS+I + REI+ S L Sbjct: 116 SENNFIASVSACSNGYGLALSDLTTGENLAVLIERLEDVISEIYSVGAREIVVS-GSLDA 174 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISY 266 L E G + + ++ + ++ D +F ++ +Y Sbjct: 175 DTVAQLRERCG------ATISIEDGETDEHVTIIEHLNNEDITKTFLRL--------YTY 220 Query: 267 IKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSITGA 325 +K+TQ + + + +++ + ID ++ NLE+ T+ S +++ SLL +D + T Sbjct: 221 LKRTQKRSLDHLQPVQVYELEEAMKIDLYSKRNLELTETIRSKNKKGSLLWLLDETKTAM 280 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 GGRL + I PL +I R + + + + +++ LK D+ R R+ G Sbjct: 281 GGRLLKQWIDRPLIRVNQIEERQEMVETLMSHFFEREDLRERLKEVYDLERLAGRVAFGN 340 Query: 386 GEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLPQS--LEKTLSSMLSD 441 +D+ +++ ++ GI L L +D A E+ K++ + + L L + Sbjct: 341 VNARDLIQLKESLKQVPGIKQLVASLAHD------KAKERAKRIDPCGDVLELLEEALYE 394 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + P ++G ++DG + LDE R K IA L+ + E T I++LK+ N GY Sbjct: 395 NPPLSVKEGNLIKDGYNQKLDEYRDASRNGKDWIARLEQQEREYTGIRSLKVGFNKVFGY 454 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IEVT ++ +L++ R+ +T++N R+ T EL + E I A N+ +E E Sbjct: 455 YIEVTKANLHLLEEG-----RYERNETLTNAERYITPELKEKEALILEAENNICELEYEL 509 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 F L + + L ++ ++ +D A +++ ++Y +P ++ +GRHP+ Sbjct: 510 FTELREKVKQYIPRLQQLAKQMSELDALQCFATISENRHYTKPEFSKDEVEVI-EGRHPV 568 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VEK + S+ ++ N+C + ++ ++ L+TGPNM GKST++RQ ALI IMAQ+G Sbjct: 569 VEKVM---DSQEYVPNNCMMG-----DNRQMLLITGPNMSGKSTYMRQIALISIMAQIGC 620 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA A + I D++F+R+G+AD+L SG+STFMVEM+E + + AT S ++ DEIGRG Sbjct: 621 FVPAKKAVLPIFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIVNATKNSLILFDEIGRG 680 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 T+T DG+++A A IEY+H+ + L +TH+HELT L L + N ++ + N ++F Sbjct: 681 TSTYDGMALAQAIIEYVHDHIGAKTLFSTHYHELTVLEDKLPQLKNVHVRAEEYNGTVVF 740 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKE 861 LH++ G AD SYGI V +LA LP +I+RA DILK E + N+ ++ + P+++ + Sbjct: 741 LHQIKEGAADKSYGIHVAQLAELPGDLIARAQDILKELE--HSGNKPEVPVQKPQVKEEP 798 Query: 862 SK-------------NNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ LSK +K ++ K LN+ +M+PL A+ +Y ++ Sbjct: 799 AQLSFFDEAEKPAETPKLSKKEKQVIDAFKSLNILDMTPLEAMNEMYKLQ 848 >gi|124021803|ref|YP_001016110.1| DNA mismatch repair protein MutS [Prochlorococcus marinus str. MIT 9303] gi|189083173|sp|A2C5T5|MUTS_PROM3 RecName: Full=DNA mismatch repair protein mutS gi|123962089|gb|ABM76845.1| putative DNA mismatch repair protein [Prochlorococcus marinus str. MIT 9303] Length = 927 Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust. Identities = 294/842 (34%), Positives = 471/842 (55%), Gaps = 64/842 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TPM+R Y+E+K+ +P+ ++ YR+GDF+E FF+DA+ SR L +TLT + GK +G+ +PM Sbjct: 96 TPMLRHYVELKAKHPERILLYRLGDFFECFFEDAIQLSRLLELTLTGKEGGKGIGR-VPM 154 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H A Y +LI+ G +AIC+Q+E+ +G +L++R++ R++TPGT+ + Sbjct: 155 AGVPHHAAERYCTELIRHGLSVAICDQLET---TPSKG--ALLKRDITRVLTPGTVLAEG 209 Query: 144 LLSPTDSNYLMAVARIRTE------WAIAWIDISTGIFKIST-SNHDRLISDIMRIDPRE 196 +L+ +N+L AV + W +A D+STG F ++ L + +++ E Sbjct: 210 MLTARRNNWLAAVVVEPAQGNQPFCWGLANADVSTGEFLVTQREGSAELHQHLAQLEASE 269 Query: 197 IIFSEK--ELSHAEY--KSLF-ETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS 251 +I ++K E S + + LF T+ +QP +E + ++Y ++T+D G Sbjct: 270 LIMAQKIGESSRPAWCPEQLFLTTMATTPFSQPE-------AERTLLNHYRLSTLDGLG- 321 Query: 252 FSQVEKT--AAAAAISYIKKTQMVNKPT--------IGYPEREDIQSTLFIDSAARSNLE 301 +V AA ++Y++ TQ + + + +P L +D+ R NLE Sbjct: 322 LQEVPLALRAAGGLLTYLRDTQPLAENVDEGIAPMPLEHPLTVFAGDALVLDAQTRRNLE 381 Query: 302 ILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL 360 + T G + SLL +D ++T G R I +PL DS I R +N ++ L Sbjct: 382 LTSTQRDGQFQGSLLWAVDRTLTAMGARCLRRWIEAPLLDSKAIRARQAVVNHLVETRSL 441 Query: 361 INPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGA 420 + ++++L+ D+ R R G +++ I DGI L L LR A Sbjct: 442 RHSLRRLLRPMGDLERLAGRAGAGHAGARELVAIADGIERLPR-----LAEQLHNALRSA 496 Query: 421 ---VEKLKKLPQSLEKTLSSM---LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRI 474 ++ L L +SL K +S+ L ++ P +GG + D D LD R+ D Sbjct: 497 PNWLDNLLTLDKSLPKLAASIREQLINNPPLSLSEGGLMHDNVDPLLDGLRNQLDDQDTW 556 Query: 475 IASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTR 534 +A +++ + + NL+++++ GYF+ V+ + AS++ D +I RQT++N R Sbjct: 557 LAGQEVQERKLSGNPNLRLQYHRTFGYFLAVSKAKASMVP------DHWIRRQTLANEER 610 Query: 535 FTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAI 594 F T +L E +I A E E F L + +Q+ S+ A++ +A +D + LA Sbjct: 611 FITPDLKTREGQIFQLRARACQREYELFCQLREQVGKQATSIRKAARAVAGLDALVGLAE 670 Query: 595 LAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWL 654 +A +YC P IDNS +K RHP+VE+ L ++S FI ND +L D L + Sbjct: 671 VAATGDYCCPEIDNSRELQLKTCRHPVVEQLLVERS---FIPNDVELGKDID-----LVV 722 Query: 655 LTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFM 714 LTGPN GKS +LRQ LI ++AQ+GS+VPA A +GI D++F+RVG+ D+LA+G+STFM Sbjct: 723 LTGPNASGKSCYLRQIGLIQLLAQVGSWVPAKQARVGIADRIFTRVGAVDDLAAGQSTFM 782 Query: 715 VEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHE 774 VEM ETA+IL+ A+++S V+LDEIGRGTAT DGLSIAWA E+L R R + ATH+HE Sbjct: 783 VEMAETANILHHASDRSLVLLDEIGRGTATFDGLSIAWAVSEHLARDLRSRTVFATHYHE 842 Query: 775 LTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYD 834 L LS+ L N+ + V ++ + ++FLH+V G A+ SYGI+ +LAG+P+ V+ RA Sbjct: 843 LNGLSQELTNVANSQVLVEETGDDLVFLHQVAAGGANRSYGIEAARLAGVPDDVVQRARQ 902 Query: 835 IL 836 +L Sbjct: 903 VL 904 >gi|224531774|ref|ZP_03672406.1| DNA mismatch repair protein MutS [Borrelia valaisiana VS116] gi|224511239|gb|EEF81645.1| DNA mismatch repair protein MutS [Borrelia valaisiana VS116] Length = 862 Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust. Identities = 290/830 (34%), Positives = 463/830 (55%), Gaps = 59/830 (7%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K+ TPMMRQY++IK D+++F+R+G FYE+FFDDA+ AS+ L +TLTKR +++P Sbjct: 3 KNVTPMMRQYLDIKKKYKDAIIFFRVGSFYEMFFDDAIEASKLLNLTLTKR-----ENVP 57 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIES-----PLEAKKRGNKSLVRRNVVRLVTPG 137 MCGVP HT+ YI+KLI ++AICEQ + PLE R VV ++TPG Sbjct: 58 MCGVPYHTSKEYIRKLILFDKKVAICEQSSNSTSGGPLE-----------REVVEVITPG 106 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDIST---GIFKISTSNHDRLISDIMRIDP 194 + ++ L+ +NYL+A++ ++ ++ID+ST G+ S ++L D+ + P Sbjct: 107 VIIDEDFLNDDVNNYLVAISDYNNYYSFSYIDLSTSSLGVMFYENSFFEKLKRDLEKYSP 166 Query: 195 REIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 +EII SE + EY + PN D ++ I +++NI + + G F + Sbjct: 167 KEIIVSEN--FYYEYLDKLNLNRFLINKVPNWHLDKDVAIKTIKEHFNILGLSSLG-FDE 223 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQ---STLFIDSAARSNLEILRTLSG-SR 310 EK + I + K + ++ DI S +F+D + NLE+++ + S Sbjct: 224 -EKPYYISIFLIINHIKNNLKNLLSNIDKIDINNDSSYMFLDDVTQVNLELVKNNNDFSS 282 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 + SL ++ T G RL E I +P+ + ++INTRLD + FF +N L +++ + Sbjct: 283 QYSLYSVLNDCKTAMGKRLLREFILNPILNISEINTRLDHVEFFCKNISLTVTLREAFIN 342 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEK--LKKLP 428 D+ R +SR+++ R KD I + ++ LF K++ + E+ K+ Sbjct: 343 IWDIERIISRIQMKRYIKKDFLFIEKALSVFFSVKKLFDKHNFDYWIFDKFEEDSASKVY 402 Query: 429 QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 + +SS SD+L ++ G D LD + L+ + + I +KI Sbjct: 403 FLINSAISSS-SDEL---------IKRGYDLKLDSLKDLKINANKYIDEYLESERLFSKI 452 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 NLKI+ NN G F EVT S+ + + FI QT+++ R+ T +LI LE I Sbjct: 453 NNLKIRKTNNRGLFFEVTKSNYA------QVPSHFIESQTLNSAKRYKTEKLISLEVDIN 506 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 NA ++ + E E F+ +++ +++ ++ L S+ A ID+ + LAK+ Y RP++ Sbjct: 507 NAEDNVVAFEQEIFDEIASNVVKHNKVLKKVSEFFAYIDLVVNFGYLAKKNEYKRPVLTG 566 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 + RHP+VE +K +++ F N + DK L+TGPNM GKST+LR Sbjct: 567 DKEIFLDKSRHPVVEHYVK--NTEIFTENFVRI----DK-ERHFCLITGPNMAGKSTYLR 619 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q ALI +MA +GS+VPAS A IGI DK+F R+G++DN+A G STF+VEM ETA+IL AT Sbjct: 620 QVALITLMAHIGSFVPASKAIIGITDKIFCRIGASDNIAKGESTFLVEMNETANILRNAT 679 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA 788 +S +I+DE+GRGT+T DGL+IA++ IEY+ + + R L ATHFHEL+ ++ K F N Sbjct: 680 EKSLIIMDEVGRGTSTNDGLAIAYSIIEYILDHIKARSLFATHFHELSAINH--KAFINL 737 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKT 838 ++++ +IFL +V + +SYGI V ++AGLP V+ RA IL++ Sbjct: 738 SMKIEKQGNDLIFLREVEEKPSLNSYGIYVARIAGLPLRVVDRASIILES 787 >gi|171778537|ref|ZP_02919664.1| hypothetical protein STRINF_00516 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282760|gb|EDT48184.1| hypothetical protein STRINF_00516 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 855 Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust. Identities = 290/892 (32%), Positives = 479/892 (53%), Gaps = 65/892 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY+++K PD+ + +RMGDFYELF++DA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYLDVKKDYPDAFLLFRMGDFYELFYEDAVKAAQILEISLTSRNKNADNPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI L+++G+++AI EQ+E P +A +V+R VV+++TPGT + Sbjct: 67 VPYHSAQQYIDVLVEMGYKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTAVDSS-- 119 Query: 146 SPTDSN-YLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKE 203 P ++N +L+A+ + +A++D+STG + S S+ L S+I+ + REI+ + Sbjct: 120 KPDNANNFLVAIDSDGKNFGLAYMDVSTGEFYATSLSDFTSLKSEILNLKAREIVVG-YD 178 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 LS E SL V Q N+ S + R Y ++ +D + + +E +AA Sbjct: 179 LSEDEQHSL--------VKQLNLLL--SFEQER---YEDVHLIDL--NLTALEISAAEKL 223 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSI 322 + Y+ TQ + +I+ L + +S+L++L S++ SL +D + Sbjct: 224 LQYVHTTQKRELSHLQKLVHYEIKDYLQMSYTTKSSLDLLENARTSKKHGSLYWLLDETK 283 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G RL I PL + +I R + + F+ N + + LK D+ R SR+ Sbjct: 284 TAMGMRLLRNWIDRPLVNQEQIEERQNIVQVFLDNFFERSDLTDSLKGVYDIERLASRVS 343 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 G+ PKD+ + + I + D P L V + LP+ LE +SS + D Sbjct: 344 FGKANPKDLLQLGHTLGQVPTIKAILESFDSPY-LDKLVNSIDTLPE-LESLISSAIDPD 401 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 +G +R G D +LD+ R + + IA ++ K + I NLKI +N GY+ Sbjct: 402 AQAVITEGSIIRTGFDETLDKYRKVMREGTSWIAEIEAKERAASGITNLKIDYNKKDGYY 461 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 VT+S+ S++ D F + T+ N RF T EL +E + A + +E + F Sbjct: 462 FHVTNSNLSLVP------DYFFRKATLKNSERFGTAELAKIEGEMLEAREQSASLEYDIF 515 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 + + L + ++ I+ +D+ +LA++A+ +Y RP ++S ++ GRH +V Sbjct: 516 MRVRAQVERYISRLQDLAKAISTVDVLQSLAVVAENNHYVRPSFNDSHEIKIEKGRHAVV 575 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGK---LWLLTGPNMGGKSTFLRQNALIVIMAQM 679 EK + Q PN G+ + L+TGPNM GKST++RQ AL VIMAQM Sbjct: 576 EKVMGTQEY-----------IPNTITFGRNTNIQLITGPNMSGKSTYMRQLALTVIMAQM 624 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYV A + + D +F+R+G+AD+L SG+STFMVEM+E + +A+ +S ++ DE+G Sbjct: 625 GSYVAAESVSLPVFDAIFTRIGAADDLISGQSTFMVEMMEANQAIKRASEKSLILFDELG 684 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A + IEY+H+ R + + ATH+HELT LS +L N + + N + Sbjct: 685 RGTATYDGMALAQSIIEYIHDHIRAKTMFATHYHELTSLSTALTHLVNVHVATLERNGDV 744 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE----KLYHHNQKDMRLYYP 855 FLHK+ G AD SYGI V K+AGLP ++ RA IL E +L+ + + + Sbjct: 745 TFLHKIAEGPADKSYGIHVAKIAGLPEDLLQRANSILTNLESGAAQLHLTAETEEK---T 801 Query: 856 EIQTKESKNNLSKNDKLF---------VEKIKCLNLDEMSPLTALKTLYAVK 898 +++T E+ +++ LF +E +K ++L ++P+ A+ +Y +K Sbjct: 802 QVKT-EAAEPVAEQLSLFADDSSNQEVIEALKKVDLMNLTPMQAMNVIYELK 852 >gi|162447740|ref|YP_001620872.1| DNA mismatch repair protein [Acholeplasma laidlawii PG-8A] gi|189030432|sp|A9NGL6|MUTS_ACHLI RecName: Full=DNA mismatch repair protein mutS gi|161985847|gb|ABX81496.1| DNA mismatch repair protein [Acholeplasma laidlawii PG-8A] Length = 841 Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust. Identities = 288/889 (32%), Positives = 493/889 (55%), Gaps = 56/889 (6%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 ++ TPMM+QY++IK D++VF+R+GDFYE+FFDDA+ AS+ L ITLTK K G+ Sbjct: 3 DISKYTPMMQQYLKIKEDYADAIVFFRLGDFYEMFFDDAITASKVLEITLTK--KEAGQT 60 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 +PMCGVP H A YIQKLI G +IAI EQ P K LV R VV+L+TPG + Sbjct: 61 VPMCGVPHHAAKVYIQKLITKGFKIAIVEQTSEP-------GKGLVEREVVQLITPGMII 113 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIF 199 +D +L + N++ +V+ + +++ DISTG F ++ L ++ + +EI+ Sbjct: 114 DDDILPKNEYNFIGSVSLSEYGYILSYADISTGDTFILNGLTKQALTDEVSNLKLKEIVL 173 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 + + Y F ++ V+ ++ + + +RI N+ + K A Sbjct: 174 TN---TSDIYLLNFFKQESILVS---IYTNQEVQNTRIVR--NLK--------EKHLKEA 217 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 + I+Y++K ++ + E + + +D ++LE+ +L+G+ +L++ ID Sbjct: 218 GSLLINYLEKESKLDLSHLMPFESVIVDQYMRLDHQVLNHLELTESLTGNINSTLIQWID 277 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQ-NPILINPIQKILKSSPDVPRSL 378 + T G RL + PL D + R D I F Q P N ++ IL+ D+ R + Sbjct: 278 KTSTAMGSRLLRYELTHPLKDKELLEKRYDYIEAFTQFEP--RNKLESILEQVYDLNRLV 335 Query: 379 SRLKIGRGEPKDIAVIRDG---IRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R+ + +D+ ++ I +L+ F N L +E+ V+ + L Q L+ + Sbjct: 336 GRVSSNQTHARDLVQLKTTLSLIPEFKEVLDSF-DNPLIDEMNDKVDVFETLFQLLDAS- 393 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + ++ P ++GG ++DG D +LDE RS+ + + + E T IKNLK+ + Sbjct: 394 ---IENEPPLTVKEGGIIKDGYDETLDEFRSIAKNGDLWLEKFENEEKERTGIKNLKVGY 450 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GYFIEV+ + +++++ +I +QT++N R+ T +L + EN+I ++ + A Sbjct: 451 NRVFGYFIEVSKGNIPLIQEEF----GYIRKQTLANAERYITEDLKNAENKILSSKDRAD 506 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E E F + + L SQ+IA +D I+L+ +A+ Y RP ++++ ++ Sbjct: 507 KLEYEIFNQIKETAKTYTHELQLLSQIIASVDKYISLSKVAEMYKYVRPKLNHNRIVDIE 566 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 +GRHP+VE+ ++ FI N + ++++LTGPNM GKST++R A+I + Sbjct: 567 NGRHPVVEQHVE------FIKNHIHMK------PSEIFILTGPNMSGKSTYMRMFAVITV 614 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ G +VPA+ A++ I D +F+R+GS+D+++ G+STFMVEM+E L AT S ++ Sbjct: 615 MAQTGMFVPATSANLPIYDAIFTRIGSSDDISGGKSTFMVEMVEANDALTYATENSLILF 674 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGTAT DGL++A A IEY+H + + + +TH+HELT LS+ N ++ + Sbjct: 675 DEIGRGTATYDGLALAQAMIEYVHTQIKAQMMFSTHYHELTKLSEKHDLITNLHVKAIEQ 734 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 + ++FLH+V G +D SYGIQV LA LP+ VI RA +LK EK ++ ++ Sbjct: 735 KDHMVFLHQVELGSSDKSYGIQVAALAHLPDPVIKRAKYLLKKLEKDGKGIDHNLFMFEE 794 Query: 856 EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTLEK 904 +++ + + + + + I L++++M+PL AL L +++ + EK Sbjct: 795 KVELGQI---IPHDIQDLLNHINDLDINQMTPLDALIKLKYLQSLSKEK 840 >gi|255531781|ref|YP_003092153.1| DNA mismatch repair protein MutS [Pedobacter heparinus DSM 2366] gi|255344765|gb|ACU04091.1| DNA mismatch repair protein MutS [Pedobacter heparinus DSM 2366] Length = 858 Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust. Identities = 271/819 (33%), Positives = 443/819 (54%), Gaps = 34/819 (4%) Query: 29 MRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPV 88 M+QY IK+ P +L+ +R+GDFYE F +DA+ S+ LGI LT+RG + + G P Sbjct: 1 MQQYNVIKAKYPGALLLFRVGDFYETFGEDAIKTSQILGIVLTRRGTGPNGALELAGFPH 60 Query: 89 HTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPT 148 H+ ++Y+ KL++ G R+AIC+Q+E P + K++V+R V LVTPG D +L+ Sbjct: 61 HSLDNYLSKLVRAGQRVAICDQLEDP-----KTTKTIVKRGVTELVTPGVAYNDNILNQK 115 Query: 149 DSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHAE 208 +NYL AV + +++ DISTG F ++ N + + + P E++F + + Sbjct: 116 SNNYLAAVFFDKNTIGVSFADISTGEFHVAQGNAEYIDKLLQGFRPNEVVFQK-----TK 170 Query: 209 YKSLFETLGN--VAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAIS 265 K E G+ + F + + ++ + ++ FG Q AA + Sbjct: 171 RKEFLEAFGDKFYTYHLDDWAFTGDYANETLTKHFEVNSLKGFGVDRLQTGIVAAGVVLH 230 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y+ +T+ N I R + +++D NLE++ + + +L + +D + T Sbjct: 231 YLNETEHRNLKHITSISRLEEDKYMWLDRFTIRNLELVSS-ANDNAVTLFEVLDQTSTPM 289 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 G RL + I PL + I RL ++F +++ L+ +K D+ R +S++ + + Sbjct: 290 GARLLHKWIIMPLKELKPIEERLGMVDFLVKHDALLQEFLSHIKQIGDLERLISKVGLQK 349 Query: 386 GEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 P+++ ++ + + N+ KN L + + + LE+ L D Sbjct: 350 VGPRELCQLKKALYHIEAVKNVAEASKNPFLSVLADQLNPCLSIREKLERELQQ----DP 405 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P G + DG D LD R + K + +Q + A T I +LK+ NN GY++ Sbjct: 406 PALLIKGNVIADGIDEELDRLRKISFGGKDYLVEIQKREAAATGIPSLKVAFNNVFGYYL 465 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EVT + + D +I +QT+ + R+ T EL + E +I A IE++ + Sbjct: 466 EVTHTHKDKVPAD------WIRKQTLVSAERYITPELKEYEEQILGAEEKIQQIEVKLYN 519 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L + + + + +IA +D+ + A LA + +Y +P I+ +K GRHP++E Sbjct: 520 ELMYQVSTYIKPIQLNAFLIAQLDVLLCFAQLAVKNHYVKPEINKGKVLDIKGGRHPVIE 579 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 + L + +I ND L D ++ ++ ++TGPNM GKS LRQ LIV+M QMG +V Sbjct: 580 QRLP--VGEAYITNDVFL----DNDTQQIIIITGPNMSGKSAILRQTGLIVLMGQMGCFV 633 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA A IG+VDK+F+RVG++DNL+SG STFMVEM ETASILN ++ S ++LDEIGRGT+ Sbjct: 634 PAKAAAIGLVDKIFTRVGASDNLSSGESTFMVEMNETASILNNISDNSLILLDEIGRGTS 693 Query: 744 TLDGLSIAWATIEYL--HETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 T DG+SIAWA E+L H T R + L ATH+HEL +L+ ++ R N + + + +IF Sbjct: 694 TYDGISIAWAIAEFLHTHPTARPKTLFATHYHELNELATTMNRIRNFNVSIKELGNKVIF 753 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 L K+IPG ++HS+GI V K+AG+P +I+RA +ILK E Sbjct: 754 LRKLIPGGSEHSFGIHVAKMAGMPPKLINRANEILKKLE 792 >gi|218232426|ref|YP_002368572.1| DNA mismatch repair protein MutS [Bacillus cereus B4264] gi|226723052|sp|B7HDP4|MUTS_BACC4 RecName: Full=DNA mismatch repair protein mutS gi|218160383|gb|ACK60375.1| DNA mismatch repair protein MutS [Bacillus cereus B4264] Length = 890 Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust. Identities = 274/833 (32%), Positives = 472/833 (56%), Gaps = 65/833 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R + IPMCG Sbjct: 5 TPMIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 65 VPYHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTI 119 Query: 146 SPTDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEK 202 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 120 DEKENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DS 178 Query: 203 ELSHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 S E L ETL A A P +H + N++ + ++ Sbjct: 179 SFSKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLIKAVGRL-- 227 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQS 313 +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + S Sbjct: 228 ------FNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGS 278 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T GGR+ + + PL +I RL+ + F+ + L +++ LK D Sbjct: 279 LLWLLDKTKTAMGGRMLKQWMERPLIQKERIEERLEMVETFVNDYFLREDLKEKLKEVYD 338 Query: 374 VPRSLSRLKIGRGEPKDIAVIRD------GIRSGINILNLFLKNDLPEELRGAVEKLKKL 427 + R ++ G +D+ +R I I++L+ + L ++GA Sbjct: 339 LERLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYASRL---IQGA-----DP 390 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 +SL + L + ++ P +DG ++DG + LD+ R + K IA L+ + + T Sbjct: 391 CESLTELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITG 450 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 IK+LKI +N GY+IEVT ++ + L + R+ +QT++N RF T EL + E I Sbjct: 451 IKSLKIGYNRIFGYYIEVTKANLAAL-----PEGRYERKQTLANAERFITDELKEKETLI 505 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 A + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 506 LEAEEKIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLT 565 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++ Sbjct: 566 TKREIFIKDGRHPVVEKVL---NGKLYVPNDCIMPENMD-----VFLITGPNMSGKSTYM 617 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ AL+ +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A Sbjct: 618 RQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANA 677 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 + +S ++ DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L +SL + N Sbjct: 678 SERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLDQLKN 737 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 738 VHVSAIEENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 790 >gi|14577935|gb|AAK68860.1|AF091119_1 DNA mismatch repair protein HexA [Lactococcus lactis] Length = 841 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 291/886 (32%), Positives = 489/886 (55%), Gaps = 66/886 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L +TLT R K+ IPM G Sbjct: 6 SPGMQQYLDIKQDYPDAFLLFRMGDFYELFYDDAVNAAQILELTLTSRNKNSENPIPMAG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A YI KL+ +G+++A+ EQ+E P +A +V+R V +++TPGT + Sbjct: 66 VPHHAAAEYIDKLVDLGYKVAVAEQMEDPKKAV-----GIVKRAVTQVITPGTTIDTA-- 118 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204 + D+N+L+A+ +A++++D+STG FK++ S ++ +I + REI+ + L Sbjct: 119 NSVDNNFLVAIDFKDKHYALSYMDLSTGEFKVTELSEFSAVVGEIASLKAREIV-AGFTL 177 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 ++ K +FE N+ +++ I E+ + D +T + E A+ + Sbjct: 178 DESQLK-VFERQMNLLISE-----QLEIPENLLIDLSGLTAL---------ENQVASKLL 222 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT 323 +Y+K+TQM + + E +I+ L +D A +S+LE+ +++ +L +D + T Sbjct: 223 AYVKETQMRDLSHLQEVEHYEIKDFLQMDFATKSSLELTANKRENKKHGTLYWLLDETKT 282 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G R+ I PL ++ I R++ + F+ + + + + LK D+ R SR+ Sbjct: 283 AMGTRMLRSWIDRPLISNSAIQKRMEIVQIFLDHFFERSDLIEALKGVYDLERLASRVSF 342 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLK--NDLP-EELRGAVEKLKKLPQSLEKTLSSMLS 440 G+ P D + + + S + + L N+ P EEL+ +L ++P+ L ++S +S Sbjct: 343 GKAVPVDFLQLANSL-SNVPAIKYILGMLNEAPLEELKS---QLDEIPE-LSGLINSAIS 397 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 ++ +GG ++ G +A LD+ R + IA L+ +T I L+I +N G Sbjct: 398 ENASRTITEGGIIKKGYNAQLDKYREALENGTSWIAKLEADEKAKTGISTLRIDYNRKDG 457 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+ +T S + + + F + T+ N RF + EL ++E + A + +E + Sbjct: 458 YYFHITQSQLNSVP------EHFYRKATLKNSERFGSQELTEIEEIMLEAREKSSSLEYD 511 Query: 561 SFEILSNAIIEQS-ESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI-VKDGR 618 F L + +Q L ++ IA ID +L+++A++Q Y RP + + + + +K GR Sbjct: 512 LFMGLRDLKRKQYIGRLQALAKTIAEIDCLQSLSVVAEKQGYIRPTLTDGSRIVEIKGGR 571 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 H +VE + Q ++ ND +L D + L+TGPNM GKST++RQ AL VIMAQ Sbjct: 572 HAVVEAVMGAQE---YVPNDIELPEQTD-----IQLITGPNMSGKSTYMRQFALTVIMAQ 623 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA A++ I D +F+R+G++DNL SG STFMVEM E + +A+++S +I DE+ Sbjct: 624 IGSFVPAETANLPIFDAIFTRIGASDNLISGESTFMVEMSEANHAIQKASSRSLIIFDEL 683 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGTAT DG+++A A IEY+H+ + L ATH+HELTDL ++L N + + N Sbjct: 684 GRGTATYDGMALAQAIIEYVHDHIGAKTLFATHYHELTDLDEALDHLDNVHVATLEQNGN 743 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE------KLYHHNQKDMRL 852 + FLHK+ G AD SYGI V K+AGLP ++ RA IL+ E K Q+ + L Sbjct: 744 VTFLHKITEGPADKSYGIHVAKIAGLPQPLLERADLILQKLENKPLPAKKVADEQEQLSL 803 Query: 853 YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + ++N +EKIK N+D M+ AL L+ +K Sbjct: 804 F-----------DFTENSSEIIEKIKRQNVDNMTSREALNFLWELK 838 >gi|219684957|ref|ZP_03539898.1| DNA mismatch repair protein MutS [Borrelia garinii PBr] gi|219671695|gb|EED28751.1| DNA mismatch repair protein MutS [Borrelia garinii PBr] Length = 862 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 288/826 (34%), Positives = 461/826 (55%), Gaps = 51/826 (6%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K+ TPMMRQY++IK D+++F+R+G FYE+FFDDA+ AS+ L +TLTKR +++P Sbjct: 3 KNITPMMRQYLDIKKKYKDAIIFFRVGSFYEMFFDDAIEASKLLNLTLTKR-----ENVP 57 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP HT+ YI+KLI ++AICEQ+ +P + R VV ++TPG + ++ Sbjct: 58 MCGVPCHTSKEYIRKLILFDKKVAICEQVSNPTSTGP------LEREVVEVITPGVIVDE 111 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDIST---GIFKISTSNHDRLISDIMRIDPREIIF 199 L+ +NYL+A++ + ++ ++ID+ST GI S ++L D+ + P+EII Sbjct: 112 DFLNDDVNNYLVAISDYKNYYSFSYIDLSTSSLGIMFYENSFFEKLKRDLEKYSPKEIIV 171 Query: 200 SEK-ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 SE + E +L L N P D ++ I +++NI + + G F + +K Sbjct: 172 SENFYYQYLEKLNLSRFLINRV---PAWHLDKDVAIKTIKEHFNILVLSSLG-FDE-DKP 226 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQ---STLFIDSAARSNLEILRTLSG-SREQSL 314 + I + K + ++ DI S +F+D + NLE+++ + S + SL Sbjct: 227 YYISIFLIINHIKNNLKNLLSNIDKIDINNDSSYMFLDDVTQVNLELVKNNNDFSSQYSL 286 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 ++ T G RL E I +P+ + + INTRLD + FF +N L +++ + D+ Sbjct: 287 YSVLNDCKTAMGKRLLREFILNPILNISDINTRLDHVEFFYKNISLTMTLREAFINIWDI 346 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEK--LKKLPQSLE 432 R +SR+++ R KD I + + LF K++ E+ L K+ + Sbjct: 347 ERIISRIQMKRYIKKDFLFIEKALSVFFLVKKLFDKHNFDYWNFDKFEEDSLSKVCFLIN 406 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 +S+ SD+L ++ G + LD + L+ + + I +KI NLK Sbjct: 407 SAISNS-SDEL---------IKRGYNLKLDNLKDLKINANKYIDEYLESERLLSKINNLK 456 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 I+ NN G F EVT S+ S + F+ QT+++ R+ T +LI LE I NA + Sbjct: 457 IRKTNNRGLFFEVTKSNYS------QVPSHFMESQTLNSSKRYKTEKLISLEVDINNAED 510 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 S + E E F+ ++ +++ ++ L S+ A ID+ LAK+ Y RP++ + Sbjct: 511 SVVAFEQEIFDEIAANVVKHNKVLKKVSEFFAYIDLVANFGYLAKKNEYKRPVLTSDKEI 570 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 ++ RHP+VE +K + + F N ++ L+TGPNM GKST+LRQ AL Sbjct: 571 FLEKSRHPVVEHYVK--NVEIFTENFVRIN-----KERYFCLITGPNMAGKSTYLRQVAL 623 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 I +MA +GS+VPAS A IGI DK+F R+G++DNLA G STF+VEM ETA+IL AT +S Sbjct: 624 ITLMAHIGSFVPASKALIGITDKIFCRIGASDNLAKGESTFLVEMNETANILRNATEKSL 683 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 +I+DE+GRGT+T DGL+IA++ IEY+ E + R L ATHFHEL+ ++ K F N ++++ Sbjct: 684 IIMDEVGRGTSTNDGLAIAYSIIEYILEYIKARSLFATHFHELSAINH--KAFINLSMKI 741 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKT 838 ++FL ++ + +SYGI V ++AGLP VI RA IL++ Sbjct: 742 EKQGNDLVFLREIEEKPSLNSYGIYVARIAGLPLKVIDRANSILES 787 >gi|33241254|ref|NP_876196.1| DNA mismatch repair protein [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|44888178|sp|Q7V9M5|MUTS_PROMA RecName: Full=DNA mismatch repair protein mutS gi|33238784|gb|AAQ00849.1| Mismatch repair ATPase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 914 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 298/870 (34%), Positives = 475/870 (54%), Gaps = 56/870 (6%) Query: 2 TKEFSSPQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALL 61 T++FS+ ++ L E + TP++R Y+E+K +P+ ++ YR+GDF+E FF+DA+ Sbjct: 67 TEDFSNDERPAWSHHSLVE-INELTPVLRHYVELKQKHPERILLYRLGDFFECFFEDAIG 125 Query: 62 ASRCLGITLTKR--GKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKK 119 S L +TLT + GK +G+ +PM G+P H A Y LI+ G +AIC+Q+ES K Sbjct: 126 LSELLELTLTGKEGGKKIGR-VPMAGIPHHAAERYCSTLIQKGLSVAICDQLESI--QNK 182 Query: 120 RGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAV------ARIRTEWAIAWIDISTG 173 G L++R + R++TPGT+ E+ +L +N+L A+ + +W +A DISTG Sbjct: 183 EG--KLLKRGITRILTPGTVLEEGMLQAKKNNWLAAILIESNSQTNQLKWGLASADISTG 240 Query: 174 IFKISTSNH-DRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSI 232 F + N D L D++ I+ EII + ++ + +++ Q F Sbjct: 241 EFTVKEGNGIDTLEQDLLNIEASEIICEQLDV---DISKKWQSNRIKITQQSKTSFSLQE 297 Query: 233 SESRIADYYNITTVDTFG-SFSQVEKTAAAAAISYIKKTQMVN---------KPTIGYPE 282 +++ + +YN+ T++ G + +++ AA + Y+K+T ++ K + +P+ Sbjct: 298 AKAILKKHYNLKTINGLGLNETELALRAAGGLLYYLKETNPIHNIGVKNKCSKVVLDFPK 357 Query: 283 REDIQSTLFIDSAARSNLEILRTLS-GSREQSLLKTIDYSITGAGGRLFAERIASPLTDS 341 +L ID+ R NLE+ +T G + SLL ID ++T GGR I +PL +S Sbjct: 358 NNLRGDSLIIDAQTRRNLELTKTQKDGHFQGSLLCAIDRTLTAMGGRCLRRWIENPLINS 417 Query: 342 TKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRS- 400 I R I ++ L ++ +L++ D+ R R G+ +++ I D + Sbjct: 418 ELILQRQRLITLLVEKRPLRKALRNLLRTMGDIERLSGRASAGQAGARELVAIADCLEKL 477 Query: 401 ---GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGA 457 N+ NL + P + +E + L + + L D+ P +G + D Sbjct: 478 PKLAANLQNLSIN---PPKWFSKLENINPELTKLAEEIKDKLIDNPPLSITEGNLINDSV 534 Query: 458 DASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDL 517 D LD R+ D +++ + K + NLK++H+ GYF+ V+ S A+ + Sbjct: 535 DKILDGLRNQLDDQNEWLSNQEKKERNISGNNNLKLQHHRTFGYFLAVSKSKANTVP--- 591 Query: 518 ESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLD 577 D +I RQT++N RF T L + E++I A E + F L + + + Sbjct: 592 ---DHWIRRQTLANEERFVTPALKERESKIFQLKVKAANREYDLFCALRELVGGYAPIIR 648 Query: 578 NASQVIAIIDISIALAILAKEQNYCRP-IID-----NSTNFIVKDGRHPIVEKTLKQQSS 631 ++ IA +D+ + LA LA NYC P IID NS + +K RHP+VE+ L ++ Sbjct: 649 ETAKAIAGLDVLLGLAELASTNNYCAPNIIDKKSLSNSRSINIKGCRHPVVEQMLVEEK- 707 Query: 632 KPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIG 691 F AND +L D L +LTGPN GKS +LRQ LI I++Q+GS++PA A I Sbjct: 708 --FQANDIELGDGVD-----LIILTGPNASGKSCYLRQIGLIQILSQIGSWIPADKASIS 760 Query: 692 IVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIA 751 I D++F+RVG+ D+LA+G+STFMVEM ETA ILNQAT S V+LDEIGRGT+T DGLSIA Sbjct: 761 IADRVFTRVGAVDDLAAGQSTFMVEMAETAFILNQATQDSIVLLDEIGRGTSTFDGLSIA 820 Query: 752 WATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIAD 811 W+ E+L E + R + ATH+HEL +L+K + N + V ++ E I FLH+VIPG ++ Sbjct: 821 WSVSEFLAENIKSRTIFATHYHELNELAKKMGNVANFQVLVHETGEDIHFLHQVIPGGSN 880 Query: 812 HSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 SYGI+ +LAG+P +VI+RA +LK E+ Sbjct: 881 RSYGIEAARLAGVPKSVINRARGVLKRLEE 910 >gi|113955376|ref|YP_729317.1| DNA mismatch repair protein MutS [Synechococcus sp. CC9311] gi|122945880|sp|Q0IE05|MUTS_SYNS3 RecName: Full=DNA mismatch repair protein mutS gi|113882727|gb|ABI47685.1| DNA mismatch repair protein MutS [Synechococcus sp. CC9311] Length = 911 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 289/836 (34%), Positives = 452/836 (54%), Gaps = 53/836 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TPM+R Y+E+K+ +P+ ++ YR+GDF+E FF+DA+ SR L +TLT + GK +G+ +PM Sbjct: 99 TPMLRHYVELKAAHPERILLYRLGDFFECFFEDAIHLSRLLELTLTGKEAGKQIGR-VPM 157 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIES-PLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 G+P H A Y +LI+ G +A+C+Q+E+ P +G +L+RR++ R++TPGT+ E+ Sbjct: 158 AGIPHHAAERYCSELIRRGLSVALCDQLEAAPASGSAKG--TLLRRDITRVLTPGTVLEE 215 Query: 143 QLLSPTDSNYLMAV------ARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPR 195 LLS +N+L AV R W +A D+STG F + N L ++ R+DP Sbjct: 216 GLLSARRNNWLAAVVVEPAQGRQPFRWGLACADVSTGEFLVREQDNSAALHQELARLDPA 275 Query: 196 EIIFSEKE---LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-S 251 E+I + S + +GN +QP +E+ + + + + T+D G Sbjct: 276 ELIHHNQNSVAPSWCPERLQRCDIGNTPFSQPE-------AEALLLERFRLQTLDGLGLQ 328 Query: 252 FSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDI-----QSTLFIDSAARSNLEILRTL 306 + AA I+Y+ +T ++ I P E L +D+ R NLE++ T Sbjct: 329 NVPLAMRAAGGLIAYLGETCPLDDNGITPPPLERPITCFPGDALVLDAQTRRNLELIATQ 388 Query: 307 SGSREQ-SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQ 365 ++ Q SLL ID ++T G R I +PL D + I +R S++ + L ++ Sbjct: 389 RDNQFQGSLLWAIDRTLTAMGARCLRRWIEAPLMDPSIIRSRQASVSQLVSKRPLRQALR 448 Query: 366 KILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLK--NDLPEELRGAVEK 423 ++L+ D+ R R G +D+ I DG+ + NL + P L +E Sbjct: 449 RLLRPMGDLERLAGRAGAGHAGARDLVAIADGLERLPQLANLITSQLDGGPSWLSDVLEP 508 Query: 424 LKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 L + ++ L D+ P +GG + DG D LD R+ D + +A + Sbjct: 509 DPAL-AVIGASIRHQLMDNPPLSLSEGGLIHDGVDPLLDGLRNQLDDQESWLAEQEQLER 567 Query: 484 EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDL 543 + + NLK++++ GYF+ V+ + + + D +I RQT++N RF T +L Sbjct: 568 QSSNNSNLKLQYHRTFGYFLSVSRARSGAVP------DHWIRRQTLANEERFITPDLKAR 621 Query: 544 ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCR 603 E +I A E E F L I E +E++ +++ IA +D +LA A +C Sbjct: 622 EGQIFQMRARAAQREYELFCELRGQIGEHAEAIRRSARAIAGLDALTSLAEAAATGGWCA 681 Query: 604 PIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSG---KLWLLTGPNM 660 P I + +++ GRHP+VE+ L + D PND N G L +LTGPN Sbjct: 682 PEITADRSMVIEQGRHPVVEQLLVE-----------DAFTPNDSNLGTGIDLVVLTGPNA 730 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GKS +LRQ LI ++AQ+GS+VPA A IGI D++F+RVG+ D+LA+G+STFMVEM ET Sbjct: 731 SGKSCYLRQIGLIQLLAQIGSWVPAQAARIGIADRIFTRVGAVDDLAAGQSTFMVEMAET 790 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 A+IL+ A+ +S V+LDEIGRGTAT DGLSIAWA E+L + R + ATH+HEL L+ Sbjct: 791 ANILHHASERSLVLLDEIGRGTATFDGLSIAWAVSEHLAGDLQARTVFATHYHELNALAG 850 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 N + V ++ ++FLH+V G A SYGI+ +LAG+P +V+ RA +L Sbjct: 851 ERSNVANCQVLVEETGSDLVFLHRVAAGGASRSYGIEAARLAGVPASVVQRARQVL 906 >gi|51599049|ref|YP_073237.1| DNA mismatch repair protein MutS [Borrelia garinii PBi] gi|81691531|sp|Q65ZX6|MUTS_BORGA RecName: Full=DNA mismatch repair protein mutS gi|51573620|gb|AAU07645.1| DNA mismatch repair protein [Borrelia garinii PBi] Length = 862 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 291/831 (35%), Positives = 463/831 (55%), Gaps = 61/831 (7%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K+ TPMMRQY++IK D+++F+R+G FYE+FFDDA+ AS+ L +TLTKR +++P Sbjct: 3 KNITPMMRQYLDIKKKYKDAIIFFRVGSFYEMFFDDAIEASKLLNLTLTKR-----ENVP 57 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP HT+ YI+KLI ++AICEQ A + + R VV ++TPG + ++ Sbjct: 58 MCGVPYHTSKEYIRKLILFDKKVAICEQ------ASNLTSTGPLEREVVEVITPGVIVDE 111 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDIST---GIFKISTSNHDRLISDIMRIDPREIIF 199 L+ +NYL+A++ + ++ ++ID+ST G+ S ++L D+ + P+EII Sbjct: 112 DFLNDDVNNYLVAISDYKNYYSFSYIDLSTSSLGVMFYENSFFEKLKRDLEKYSPKEIIV 171 Query: 200 SEKELSHAEYK-SLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 SE +K +L L N P D I+ I +++NI + + G F + EK Sbjct: 172 SENFYYQYLHKLNLSRFLINRV---PAWHLDKDIAIKTIKEHFNILGLSSLG-FDE-EKP 226 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQ---STLFIDSAARSNLEILRTLSG-SREQSL 314 + I + K + ++ DI S +F+D + NLE+++ + S + SL Sbjct: 227 YYISIFLIINHIKNNLKNLLSNIDKIDINNDSSYMFLDDVTQVNLELVKNNNDFSSQYSL 286 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 ++ T G RL E I +P+ + ++INTRLD + FF +N L +++ + D+ Sbjct: 287 YSVLNDCKTAMGKRLLREFILNPILNISEINTRLDHVEFFYKNISLTMTLREAFINIWDI 346 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R +SR+++ R KD I + + LF K++ E+ S+ K Sbjct: 347 ERIISRIQMKRYIKKDFLFIEKALSVFFLVKKLFDKHNFDYWNFDKFEE-----DSVSKV 401 Query: 435 ---LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE----TK 487 ++S +SD ++ G D LD + L+ + + I +Y E +K Sbjct: 402 YFLINSAISDS------SDELIKRGYDLKLDNLKDLKINANKYID----EYLESERILSK 451 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 I NLKI+ NN G F EVT S+ S + F+ QT+S+ R+ T +LI LE I Sbjct: 452 INNLKIRKTNNRGLFFEVTKSNYS------QVPSHFMESQTLSSSKRYKTEKLISLEVDI 505 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 NA +S + E E F+ ++ +++ ++ L ++ A ID+ + LAK+ Y RP++ Sbjct: 506 NNAEDSVVAFEQEIFDEIAANVVKHNKVLKKVAEFFAYIDLVVNFGYLAKKNEYKRPVLT 565 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 + + RHP+VE +K +++ F N ++ L+TGPNM GKST+L Sbjct: 566 SDKEIFLDKSRHPVVEHYVK--NAEIFTENFVRIN-----KERHFCLITGPNMAGKSTYL 618 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ ALI +MA +GS+VPAS A IGI DK+F R+G++DNLA G STF+VEM ETA+IL A Sbjct: 619 RQVALITLMAHIGSFVPASKALIGITDKIFCRIGASDNLAKGESTFLVEMNETANILRNA 678 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 T +S +I+DE+GRGT+T DGL+IA++ IEY+ E + R L ATHFHEL+ ++ K F N Sbjct: 679 TEKSLIIMDEVGRGTSTNDGLAIAYSIIEYILEYIKARSLFATHFHELSAINH--KAFIN 736 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKT 838 ++++ ++FL ++ + +SYGI V ++AGLP VI RA IL++ Sbjct: 737 LSMKIEKQGNDLVFLREIEEKPSLNSYGIYVARIAGLPLKVIDRANAILES 787 >gi|218898869|ref|YP_002447280.1| DNA mismatch repair protein MutS [Bacillus cereus G9842] gi|226723051|sp|B7ITM1|MUTS_BACC2 RecName: Full=DNA mismatch repair protein mutS gi|218542997|gb|ACK95391.1| DNA mismatch repair protein MutS [Bacillus cereus G9842] Length = 892 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 272/829 (32%), Positives = 466/829 (56%), Gaps = 57/829 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R IPMCG Sbjct: 5 TPMIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 65 VPHHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTI 119 Query: 146 SPTDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEK 202 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 120 DEKENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DS 178 Query: 203 ELSHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 S E L ETL A A P +H + N++ + ++ Sbjct: 179 SFSKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLIKAIGRL-- 227 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQS 313 +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + S Sbjct: 228 ------FNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGS 278 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T GGR+ + + PL K+ RL+ + F+ + L +++ LK D Sbjct: 279 LLWLLDKTKTAMGGRMLKQWMERPLIQKEKVEERLEMVETFVNDYFLREDLKEKLKEVYD 338 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSL 431 + R ++ G +D+ +R + IL L N L + +SL Sbjct: 339 LERLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPC----ESL 394 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + L + ++ P +DG ++DG + LD+ R + K IA L+ + + T +K+L Sbjct: 395 TELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGVKSL 454 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 KI +N GY+IEVT ++ + L + R+ +QT++N RF T EL + E I A Sbjct: 455 KIGYNRIFGYYIEVTKANLAAL-----PEGRYERKQTLANAERFITDELKEKETLILEAE 509 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 510 EKIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTKRE 569 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++RQ A Sbjct: 570 IFIKDGRHPVVEKVL---NGKLYVPNDCIMPEKMD-----VFLITGPNMSGKSTYMRQLA 621 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 L+ +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ +S Sbjct: 622 LVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERS 681 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 ++ DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L +SL + N + Sbjct: 682 LILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLDQLKNVHVS 741 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 742 AIEENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 790 >gi|301055259|ref|YP_003793470.1| DNA mismatch repair protein [Bacillus anthracis CI] gi|300377428|gb|ADK06332.1| DNA mismatch repair protein [Bacillus cereus biovar anthracis str. CI] Length = 892 Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust. Identities = 273/829 (32%), Positives = 466/829 (56%), Gaps = 57/829 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R + IPMCG Sbjct: 5 TPMIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 65 VPYHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTI 119 Query: 146 SPTDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEK 202 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 120 DEKENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DS 178 Query: 203 ELSHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 S E L ETL A A P +H + N++ + ++ Sbjct: 179 SFSKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLIKAVGRL-- 227 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQS 313 +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + S Sbjct: 228 ------FNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGS 278 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T GGR+ + + PL +I RL+ + F+ + L +++ LK D Sbjct: 279 LLWLLDKTKTAMGGRMLKQWMERPLIQKERIEERLEMVETFVNDYFLREDLKEKLKEVYD 338 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSL 431 + R ++ G +D+ +R + IL L N L + +SL Sbjct: 339 LERLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPC----ESL 394 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + L + ++ P +DG ++DG + LD+ R + K IA L+ + + T IK+L Sbjct: 395 TELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGIKSL 454 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 KI +N GY+IEVT ++ L + R+ +QT++N RF T EL + E I A Sbjct: 455 KIGYNRIFGYYIEVTKANLGAL-----PEGRYERKQTLANAERFITDELKEKETLILEAE 509 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 510 EKIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTKRE 569 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++RQ A Sbjct: 570 IFIKDGRHPVVEKVL---NGKLYVPNDCIMPEKMD-----VFLITGPNMSGKSTYMRQLA 621 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 L+ +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ +S Sbjct: 622 LVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERS 681 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 ++ DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L +SL + N + Sbjct: 682 LILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLDQLKNVHVS 741 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 742 AIEENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 790 >gi|52141719|ref|YP_085110.1| DNA mismatch repair protein [Bacillus cereus E33L] gi|81686627|sp|Q636Q7|MUTS_BACCZ RecName: Full=DNA mismatch repair protein mutS gi|51975188|gb|AAU16738.1| DNA mismatch repair protein, MutS family [Bacillus cereus E33L] Length = 894 Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust. Identities = 273/829 (32%), Positives = 465/829 (56%), Gaps = 57/829 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R + IPMCG Sbjct: 5 TPMIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 65 VPYHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTI 119 Query: 146 SPTDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEK 202 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 120 DEKENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DS 178 Query: 203 ELSHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 S E L ETL A A P +H + N++ + ++ Sbjct: 179 SFSKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLIKAVGRL-- 227 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQS 313 +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + S Sbjct: 228 ------FNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGS 278 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T GGR+ + + PL +I RL+ + F+ + L +++ LK D Sbjct: 279 LLWLLDKTKTAMGGRMLKQWMERPLIQKERIEERLEMVETFVNDYFLREDLKEKLKEVYD 338 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSL 431 + R ++ G +D+ +R + IL L N L + +SL Sbjct: 339 LERLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPC----ESL 394 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + L + ++ P +DG ++DG + LD+ R + K IA L+ + + T IK+L Sbjct: 395 TELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGIKSL 454 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 KI +N GY+IEVT ++ L + R+ +QT++N RF T EL + E I A Sbjct: 455 KIGYNRIFGYYIEVTKANLGAL-----PEGRYERKQTLANAERFITDELKEKETLILEAE 509 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 510 EKIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTKRE 569 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++RQ A Sbjct: 570 IFIKDGRHPVVEKVL---NGKLYVPNDCIMPEKMD-----VFLITGPNMSGKSTYMRQLA 621 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 L+ +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ +S Sbjct: 622 LVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERS 681 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 ++ DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L SL + N + Sbjct: 682 LILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEDSLDQLKNVHVS 741 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 742 AIEENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 790 >gi|322412858|gb|EFY03766.1| DNA mismatch repair protein MutS [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 851 Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust. Identities = 283/880 (32%), Positives = 478/880 (54%), Gaps = 45/880 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L I LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYPDAFLLFRMGDFYELFYDDAVKAAQLLEIGLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI++G+++AI EQ+E P +A + +V+R VV+++TPGT+ D Sbjct: 67 VPHHSAQQYIDVLIELGYKVAIAEQMEDPKQAVR-----VVKREVVQVITPGTVV-DSAK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204 + +N+L+AV + +A++D+STG F ++ ++ + S+I + +E++ +L Sbjct: 121 PDSANNFLVAVDFDGFRYGLAYMDVSTGEFCVTDLADFTSVRSEIQNLKAKEVLLG-FDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E L + + + + V+ D S+ + G + VE TAA + Sbjct: 180 SEEEQMILVKQMNLLLSYEETVYEDKSLID---------------GQLTTVELTAAGKLL 224 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT 323 Y+ KTQM + +I+ L + A +S+L+++ +++ SL +D + T Sbjct: 225 QYVHKTQMRELSHLQALVHYEIKDYLQMSYATKSSLDLVENARTNKKHGSLYWLLDETKT 284 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL I PL I R + I F+ I + LK D+ R SR+ Sbjct: 285 AMGMRLLRSWIDRPLVSKEAILERQEIIQVFLNAFIERTDLSNSLKGVYDIERLSSRVSF 344 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 G+ PKD+ + + + + + L++ + V + LP+ LE + + + D Sbjct: 345 GKANPKDLLQLGHTL-AQVPYIKAILESFSSPYIDKLVNDIDSLPE-LEYLIRTAIDPDA 402 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P +G +R+G D LD R + + IA ++ K + + I NLKI +N GY+ Sbjct: 403 PATISEGSIIRNGFDERLDHYRKVMREGTGWIADIEAKERQASGINNLKIDYNKKDGYYF 462 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 VT+S+ S++ D F + T+ N R+ T EL +E ++ A + +E + F Sbjct: 463 HVTNSNLSLVP------DHFFRKATLKNSERYGTAELAKIEGQMLEAREESASLEYDIFM 516 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 + + L ++ +A ID+ +LA++A+ +Y RP +++ +++GRH +VE Sbjct: 517 RIRTQVETYINRLQKLAKNLATIDVLQSLAVVAETNHYIRPQFNDNHVITIQEGRHAVVE 576 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 K + K +I N S D+ + + L+TGPNM GKST++RQ AL VIMAQMGS+V Sbjct: 577 KVM---GVKEYIPN----SISFDQETS-IQLITGPNMSGKSTYMRQLALTVIMAQMGSFV 628 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 A + ++ + D +F+R+G+AD+L SG+STFMVEM+E + +A+ S ++ DE+GRGTA Sbjct: 629 AADHVNLPLFDAIFTRIGAADDLISGQSTFMVEMMEANQAIKRASENSLILFDELGRGTA 688 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DG+++A A IE++H+ + + ATH+HELT+LS L R N ++ + + FLH Sbjct: 689 TYDGMALAQAIIEHIHDRIGAKTMFATHYHELTELSTKLTRLINVHVETLEKGGDVTFLH 748 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN---QKDMRLYYPEIQTK 860 K+ G AD SYGI V K+AGLP ++++RA +L FE +R+ I K Sbjct: 749 KIAQGPADKSYGIHVAKIAGLPESLLNRADTVLTRFEAQSPSTDLISDSLRVEQTNIAHK 808 Query: 861 ESKNNLSKNDKL--FVEKIKCLNLDEMSPLTALKTLYAVK 898 E + + D+ + ++ +++ M+P+ A+ LY +K Sbjct: 809 EQLSLFADEDRSQEIIRTLETIDVMNMTPMQAMTALYELK 848 >gi|324327663|gb|ADY22923.1| DNA mismatch repair protein MutS [Bacillus thuringiensis serovar finitimus YBT-020] Length = 892 Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust. Identities = 273/829 (32%), Positives = 465/829 (56%), Gaps = 57/829 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R + IPMCG Sbjct: 5 TPMIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 65 VPYHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTI 119 Query: 146 SPTDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEK 202 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 120 DEKENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DS 178 Query: 203 ELSHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 S E L ETL A A P +H + N++ + ++ Sbjct: 179 SFSKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLIKAVGRL-- 227 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQS 313 +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + S Sbjct: 228 ------FNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGS 278 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T GGR+ + + PL +I RL+ + F+ + L +++ LK D Sbjct: 279 LLWLLDKTKTAMGGRMLKQWMERPLIQKERIEERLEMVETFVNDYFLREDLKEKLKEVYD 338 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSL 431 + R ++ G +D+ +R + IL L N L + +SL Sbjct: 339 LERLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPC----ESL 394 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + L + ++ P +DG ++DG + LD+ R + K IA L+ + + T IK+L Sbjct: 395 TELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGIKSL 454 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 KI +N GY+IEVT ++ L + R+ +QT++N RF T EL + E I A Sbjct: 455 KIGYNRIFGYYIEVTKANLGAL-----PEGRYERKQTLANAERFITDELKEKETLILEAE 509 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 510 EKIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTKRE 569 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++RQ A Sbjct: 570 IFIKDGRHPVVEKVL---NGKLYVPNDCIMPENMD-----VFLITGPNMSGKSTYMRQLA 621 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 L+ +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ +S Sbjct: 622 LVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERS 681 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 ++ DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L SL + N + Sbjct: 682 LILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEDSLDQLKNVHVS 741 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 742 AIEENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 790 >gi|196044558|ref|ZP_03111793.1| DNA mismatch repair protein MutS [Bacillus cereus 03BB108] gi|225865750|ref|YP_002751128.1| DNA mismatch repair protein MutS [Bacillus cereus 03BB102] gi|254766614|sp|C1ENZ3|MUTS_BACC3 RecName: Full=DNA mismatch repair protein mutS gi|196024593|gb|EDX63265.1| DNA mismatch repair protein MutS [Bacillus cereus 03BB108] gi|225787987|gb|ACO28204.1| DNA mismatch repair protein MutS [Bacillus cereus 03BB102] Length = 890 Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust. Identities = 273/829 (32%), Positives = 465/829 (56%), Gaps = 57/829 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R + IPMCG Sbjct: 5 TPMIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 65 VPYHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTI 119 Query: 146 SPTDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEK 202 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 120 DEKENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DS 178 Query: 203 ELSHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 S E L ETL A A P +H + N++ + ++ Sbjct: 179 SFSKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLIKAVGRL-- 227 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQS 313 +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + S Sbjct: 228 ------FNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGS 278 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T GGR+ + + PL +I RL+ + F+ + L +++ LK D Sbjct: 279 LLWLLDKTKTAMGGRMLKQWMERPLIQKERIEERLEMVETFVNDYFLREDLKEKLKEVYD 338 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSL 431 + R ++ G +D+ +R + IL L N L + +SL Sbjct: 339 LERLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPC----ESL 394 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + L + ++ P +DG ++DG + LD+ R + K IA L+ + + T IK+L Sbjct: 395 TELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGIKSL 454 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 KI +N GY+IEVT ++ L + R+ +QT++N RF T EL + E I A Sbjct: 455 KIGYNRIFGYYIEVTKANLGAL-----PEGRYERKQTLANAERFITDELKEKETLILEAE 509 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 510 EKIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTKRE 569 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++RQ A Sbjct: 570 IFIKDGRHPVVEKVL---NGKLYVPNDCIMPENMD-----VFLITGPNMSGKSTYMRQLA 621 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 L+ +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ +S Sbjct: 622 LVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERS 681 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 ++ DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L SL + N + Sbjct: 682 LILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEDSLDQLKNVHVS 741 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 742 AIEENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 790 >gi|118478990|ref|YP_896141.1| DNA mismatch repair protein MutS [Bacillus thuringiensis str. Al Hakam] gi|166232115|sp|A0RHE1|MUTS_BACAH RecName: Full=DNA mismatch repair protein mutS gi|118418215|gb|ABK86634.1| DNA mismatch repair protein MutS [Bacillus thuringiensis str. Al Hakam] Length = 890 Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust. Identities = 273/829 (32%), Positives = 465/829 (56%), Gaps = 57/829 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R + IPMCG Sbjct: 5 TPMIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 65 VPYHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTI 119 Query: 146 SPTDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEK 202 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 120 DEKENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DS 178 Query: 203 ELSHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 S E L ETL A A P +H + N++ + ++ Sbjct: 179 SFSKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLIKAVGRL-- 227 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQS 313 +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + S Sbjct: 228 ------FNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGS 278 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T GGR+ + + PL +I RL+ + F+ + L +++ LK D Sbjct: 279 LLWLLDKTKTAMGGRMLKQWMERPLIQKERIEERLEMVETFVNDYFLREDLKEKLKEVYD 338 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSL 431 + R ++ G +D+ +R + IL L N L + +SL Sbjct: 339 LERLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPC----ESL 394 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + L + ++ P +DG ++DG + LD+ R + K IA L+ + + T IK+L Sbjct: 395 TELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGIKSL 454 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 KI +N GY+IEVT ++ L + R+ +QT++N RF T EL + E I A Sbjct: 455 KIGYNRIFGYYIEVTKANLGAL-----PEGRYERKQTLANAERFITDELKEKETLILEAE 509 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 510 EKIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTKRE 569 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++RQ A Sbjct: 570 IFIKDGRHPVVEKVL---NGKLYVPNDCIMPENMD-----VFLITGPNMSGKSTYMRQLA 621 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 L+ +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ +S Sbjct: 622 LVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERS 681 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 ++ DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L SL + N + Sbjct: 682 LILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEDSLDQLKNVHVS 741 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 742 AIEENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 790 >gi|196034166|ref|ZP_03101576.1| DNA mismatch repair protein MutS [Bacillus cereus W] gi|195993240|gb|EDX57198.1| DNA mismatch repair protein MutS [Bacillus cereus W] Length = 892 Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust. Identities = 274/829 (33%), Positives = 465/829 (56%), Gaps = 57/829 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R + IPMCG Sbjct: 5 TPMIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 65 VPYHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTI 119 Query: 146 SPTDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEK 202 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 120 DEKENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DS 178 Query: 203 ELSHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 S E L ETL A A P +H + N++ Sbjct: 179 SFSKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLI-------- 221 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQS 313 A +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + S Sbjct: 222 KAVGCLFNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGS 278 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T GGR+ + + PL +I RL+ + F+ + L +++ LK D Sbjct: 279 LLWLLDKTKTAMGGRMLKQWMERPLIQKERIEERLEMVETFVNDYFLREDLKEKLKEVYD 338 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSL 431 + R ++ G +D+ +R + IL L N L + +SL Sbjct: 339 LERLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPC----ESL 394 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + L + ++ P +DG ++DG + LD+ R + K IA L+ + + T IK+L Sbjct: 395 TELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGIKSL 454 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 KI +N GY+IEVT ++ L + R+ +QT++N RF T EL + E I A Sbjct: 455 KIGYNRIFGYYIEVTKANLGAL-----PEGRYERKQTLANAERFITDELKEKETLILEAE 509 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 510 EKIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTKRE 569 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 +KDGRHP+VEK L + K ++ NDC + P + + ++L+TGPNM GKST++RQ A Sbjct: 570 IFIKDGRHPVVEKVL---NGKLYVPNDCIM--PENMD---VFLITGPNMSGKSTYMRQLA 621 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 L+ +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ +S Sbjct: 622 LVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERS 681 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 ++ DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L SL + N + Sbjct: 682 LILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEDSLDQLKNVHVS 741 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 742 AIEENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 790 >gi|42782853|ref|NP_980100.1| DNA mismatch repair protein MutS [Bacillus cereus ATCC 10987] gi|222097215|ref|YP_002531272.1| DNA mismatch repair protein muts [Bacillus cereus Q1] gi|48428286|sp|P61665|MUTS_BACC1 RecName: Full=DNA mismatch repair protein mutS gi|254766615|sp|B9IV59|MUTS_BACCQ RecName: Full=DNA mismatch repair protein mutS gi|42738780|gb|AAS42708.1| DNA mismatch repair protein MutS [Bacillus cereus ATCC 10987] gi|221241273|gb|ACM13983.1| DNA mismatch repair protein MutS [Bacillus cereus Q1] Length = 892 Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust. Identities = 274/829 (33%), Positives = 466/829 (56%), Gaps = 57/829 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R + IPMCG Sbjct: 5 TPMIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 65 VPYHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTI 119 Query: 146 SPTDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEK 202 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 120 DEKENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DS 178 Query: 203 ELSHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 S E L ETL A A P +H + N++ Sbjct: 179 SFSKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLI-------- 221 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQS 313 A +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + S Sbjct: 222 KAVGRLFNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGS 278 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T GGR+ + + PL +I RL+ + F+ + L +++ LK D Sbjct: 279 LLWLLDKTKTAMGGRMLKQWMERPLIQKERIEERLEMVETFVNDYFLREDLKEKLKEVYD 338 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSL 431 + R ++ G +D+ +R + IL L N L + +SL Sbjct: 339 LERLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPC----ESL 394 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + L + ++ P +DG ++DG + LD+ R + K IA L+ + + T IK+L Sbjct: 395 TELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGIKSL 454 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 KI +N GY+IEVT ++ L + R+ +QT++N RF T EL + E I A Sbjct: 455 KIGYNRIFGYYIEVTKANLGAL-----PEGRYERKQTLANAERFITDELKEKETLILEAE 509 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 510 EKIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTKRE 569 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 +KDGRHP+VEK L + K ++ NDC + P + + ++L+TGPNM GKST++RQ A Sbjct: 570 IFIKDGRHPVVEKVL---NGKLYVPNDCIM--PENMD---VFLITGPNMSGKSTYMRQLA 621 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 L+ +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ +S Sbjct: 622 LVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERS 681 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 ++ DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L +SL + N + Sbjct: 682 LILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLDQLKNVHVS 741 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 742 AIEENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 790 >gi|326941482|gb|AEA17378.1| DNA mismatch repair protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 890 Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust. Identities = 272/829 (32%), Positives = 466/829 (56%), Gaps = 57/829 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R IPMCG Sbjct: 5 TPMIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 65 VPHHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTI 119 Query: 146 SPTDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEK 202 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 120 DEKENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DS 178 Query: 203 ELSHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 S E L ETL A A P +H + N++ + ++ Sbjct: 179 SFSKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLIKAIGRL-- 227 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQS 313 +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + S Sbjct: 228 ------FNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGS 278 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T GGR+ + + PL K+ RL+ + F+ + L +++ LK D Sbjct: 279 LLWLLDKTKTAMGGRMLKQWMERPLIQKEKVEERLEMVETFVNDYFLREDLKEKLKEVYD 338 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSL 431 + R ++ G +D+ +R + IL L N L + +SL Sbjct: 339 LERLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPC----ESL 394 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + L + ++ P +DG ++DG + LD+ R + K IA L+ + + T +K+L Sbjct: 395 TELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGVKSL 454 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 KI +N GY+IEVT ++ + L + R+ +QT++N RF T EL + E I A Sbjct: 455 KIGYNRIFGYYIEVTKANLAAL-----PEGRYERKQTLANAERFITDELKEKETLILEAE 509 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 510 EKIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTKRE 569 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++RQ A Sbjct: 570 IFIKDGRHPVVEKVL---NGKLYVPNDCIMPEKMD-----VFLITGPNMSGKSTYMRQLA 621 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 L+ +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ +S Sbjct: 622 LVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERS 681 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 ++ DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L +SL + N + Sbjct: 682 LILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLDQLKNVHVS 741 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 742 AIEENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 790 >gi|296136070|ref|YP_003643312.1| DNA mismatch repair protein MutS [Thiomonas intermedia K12] gi|295796192|gb|ADG30982.1| DNA mismatch repair protein MutS [Thiomonas intermedia K12] Length = 860 Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust. Identities = 301/890 (33%), Positives = 470/890 (52%), Gaps = 48/890 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 ++ + TP+M+QY+ +K+ +P +L+ RMGDFYELF+DDA A+R L ITLT+RG+ G+ Sbjct: 3 SISAHTPLMQQYLRMKAEHPGTLLLCRMGDFYELFYDDAEKAARLLDITLTRRGQSAGEP 62 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 + M GVP + Y+ KL+K+G AICEQI P +AK LV R VVR+VTPGTLT Sbjct: 63 VIMAGVPAQALDGYLAKLVKLGESAAICEQIGDPAQAK-----GLVERRVVRVVTPGTLT 117 Query: 141 EDQLLSPTDSNYLMAVA---RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREI 197 E LL L+A+A R EW +AW+ ++ G ++ L + RI P E+ Sbjct: 118 EQTLLDDKRDAILLAIAPPKSARGEWGLAWMALTGGGLTLAQCEAAALSDWLARIAPAEV 177 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 ++ + + E + T +P FD ++ ++ + +D FG+ + Sbjct: 178 LWPQHQSLPNEPRWPHTT------ERPEWHFDAALGLRKLCAQLQVAHLDGFGAQALGAA 231 Query: 258 TAAAAAISYI-KKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 AAAAA+ ++TQ P + E + +L +D+ AR NLEIL+ L G +LL Sbjct: 232 HAAAAALLTYAEQTQGGTLPLLADLRVERAEHSLRLDAVARRNLEILQPLRGEDSPTLLS 291 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D T AG RL + + +P D+ R ++ I + ++ L+ D+ R Sbjct: 292 HLDSCQTAAGSRLLRDWLQAPPRDANVARERHAALQALIDGDLAA--LRGSLRGMADLER 349 Query: 377 SLSRLKIGRGEPKDIAVIRDGI-------RSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 +R+ + + +P++++ +RDG+ R L L +L LP Sbjct: 350 IAARIALKQAKPRELSALRDGLQRLPALRRQAAAFERCALLQTLDAQL--------DLPP 401 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 L ++ + RDGG + D+ LDE R++ + L+ + T I Sbjct: 402 EPAALLQRAIAAEPALNLRDGGVIAADFDSELDELRAIDTDCGSFLMELEQRERARTGIA 461 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 NL++++N G+FIEVT + D + RQT+ R+ T EL E++ + Sbjct: 462 NLRVQYNKVHGFFIEVTHGQTDKVPDD------YRRRQTLKGAERYITPELKAFEDKALS 515 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 A + AL E FE + A+ + A+Q +A++D ALA A + P + Sbjct: 516 AQDRALAREKVLFEGVIEALQPALADIRRAAQAVALLDTLAALAERASTFGWVCPEFVEA 575 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 + GRHP +E + + FI NDC L +L +LTGPNMGGKST++RQ Sbjct: 576 PGIDIVGGRHPAIESRVDR-----FIPNDCQLD-----EQRRLLILTGPNMGGKSTYMRQ 625 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI ++A +GSYVPA A IG +D +F+R+G++D+LA G+STFMVEM ETA+IL QAT Sbjct: 626 TALIALLAYLGSYVPARSARIGPLDAIFTRIGASDDLAGGQSTFMVEMAETAAILRQATP 685 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 S V++DE+GRGT+T DGL++A A LH+ NR L ATH+ ELTDL + N Sbjct: 686 HSLVLMDEVGRGTSTFDGLALAAAIAAQLHDRNRSLTLFATHYFELTDLVLRHPQAANVH 745 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 + +++ +GI+FLH+V G SYG+QV +LAG+P VI A L E+ + + Sbjct: 746 VGAAETPQGIVFLHEVREGPTSRSYGVQVAQLAGVPTAVIRDARKRLDALERQHQQQEAQ 805 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + L+ + E++ + +E + ++ D ++P AL+TLY +KA Sbjct: 806 LDLFAASAEIDEAEPVSVPTHEALIEALDDIDPDTLTPRQALETLYRLKA 855 >gi|42523431|ref|NP_968811.1| DNA mismatch repair protein [Bdellovibrio bacteriovorus HD100] gi|39575637|emb|CAE79804.1| DNA mismatch repair protein [Bdellovibrio bacteriovorus HD100] Length = 840 Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust. Identities = 281/828 (33%), Positives = 449/828 (54%), Gaps = 79/828 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+M+Q+ +IKS++ D ++ +RMGDF+E+FFDDA+ A+ LGI LT+R K + PMCG Sbjct: 5 TPLMKQFWDIKSVHQDKILLFRMGDFFEMFFDDAVKAAPVLGIALTQRNKKSQDETPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+ I KL+ G +IAIC+Q+E P AK +V+R V R++TPG + + L Sbjct: 65 VPHHSIAGPINKLLAAGFKIAICDQLEDPKLAK-----GIVKRGVTRVLTPGMVYDSDTL 119 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 T +YL+++ +++++D +TG F + L+ + + EI+ ++++ Sbjct: 120 DGTKPHYLVSL----DSESLSFLDTTTGEAFFFRSKKTTELLRFLQILPVAEIVIAKED- 174 Query: 205 SHAEYKSLFETLGNVAVAQ---------PNVFFDHSISESRIADYYNITTVDTFGSFSQV 255 +SL + V ++ P + + +S +R+ Y G+ S Sbjct: 175 -----ESLLTGVDGVLISHHEDIADLLHPLLKNEAPMSAARLVSY--------VGNMSGE 221 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 E A TI D++ L I S +LE+ T G SL Sbjct: 222 ESLA-----------------TISPFVMRDLEHRLEISSTTLRHLEVFSTYKGEGLGSLF 264 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 I+ + T AG RL + ++ PL D I RL+S+ F+ + + + +++IL D+ Sbjct: 265 HAINRTQTSAGSRLLRQWLSFPLRDLNAIEQRLNSVEFWRNHVLELKRVRQILGQMGDIE 324 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R L ++ + +D+ + + +GI+ L + + + E L++L +E+TL Sbjct: 325 RRLGKISQPQCNGRDLLALAGSVHAGISALEVLVHATGG---KANFEGLRELAYKIERTL 381 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 +D P + G +R G LDE L ++ +++ ++ + E+T I +LKI++ Sbjct: 382 V----EDPPLATKQGYLIRTGVSPELDELIELSTNAQAMVSRMEAEEKEKTGISSLKIRY 437 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 NN GY+IE+T+S KD ++ + +QT++N R+ T ELI+LE ++ +A Sbjct: 438 NNVFGYYIEITNS-----HKD-KAPAHYQRKQTLTNAERYCTDELIELERKVLSANTKRA 491 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E E FE L I+ Q L + + +D+ +LA L+ E+ Y RP + +K Sbjct: 492 DLEFEFFEALRKEILAQCPGLLALAHECSEVDVVASLAWLSLEEKYVRPKFSADGSLKMK 551 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDL---SCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 RHP+VE+T+K K F+AND +L SC LLTGPNM GKSTF+RQ AL Sbjct: 552 ASRHPVVEQTVK----KNFVANDLELRQHSC---------LLLTGPNMAGKSTFMRQVAL 598 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 I+AQMGS+VP A + I D +F+R+G++D L+ G STFMVEM ET+++L AT S Sbjct: 599 NAILAQMGSFVPCDEAEMPIFDAIFTRIGASDQLSEGLSTFMVEMTETSAMLKNATKDSL 658 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 VILDE+GRGT+T DG+ +A + +E+L + ATH+HELT L +S + NA + V Sbjct: 659 VILDEVGRGTSTFDGMCLAQSILEHLLSDVKALTFFATHYHELTSLDQSFGQITNAHMTV 718 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 ++ N I FLH ++ G A SYG+QV +LAGLP TV RA +L+ E Sbjct: 719 AERNGEIRFLHTLVKGPALKSYGVQVAELAGLPATVTKRAKSLLRDIE 766 >gi|47568274|ref|ZP_00238977.1| DNA mismatch repair protein MutS [Bacillus cereus G9241] gi|47555102|gb|EAL13450.1| DNA mismatch repair protein MutS [Bacillus cereus G9241] Length = 892 Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust. Identities = 273/829 (32%), Positives = 468/829 (56%), Gaps = 57/829 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R + IPMCG Sbjct: 5 TPMIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 65 VPYHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTI 119 Query: 146 SPTDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEK 202 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 120 DEKENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DS 178 Query: 203 ELSHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 S E L ETL A A P +H + N++ + ++ Sbjct: 179 SFSKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLIKAVGRL-- 227 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQS 313 +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + S Sbjct: 228 ------FNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGS 278 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T GGR+ + + PL +I RL+ + F+ + L +++ LK D Sbjct: 279 LLWLLDKTKTAMGGRMLKQWMERPLIQKERIEERLEMVETFVNDYFLREDLKEKLKEVYD 338 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSL 431 + R ++ G +D+ +R + IL L N L + +SL Sbjct: 339 LERLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPC----ESL 394 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + L + ++ P +DG ++DG + LD+ R + K IA L+ + + T IK+L Sbjct: 395 TELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGIKSL 454 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 KI +N GY+IEVT ++ L + R+ +QT++N RF T EL + E I A Sbjct: 455 KIGYNRIFGYYIEVTKANLGAL-----PEGRYERKQTLANAERFITDELKEKETLILEAE 509 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 510 EKIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTKRE 569 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 +KDGRHP+VEK L + K ++ NDC + P + + ++L+TGPNM GKST++RQ A Sbjct: 570 IFIKDGRHPVVEKVL---NGKLYVPNDCIM--PENMD---VFLITGPNMSGKSTYMRQLA 621 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 L+ +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ +S Sbjct: 622 LVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERS 681 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 ++ DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L +SL + N + Sbjct: 682 LILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLDQLKNVHVS 741 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 742 AIEENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 790 >gi|49478366|ref|YP_037830.1| DNA mismatch repair protein MutS [Bacillus thuringiensis serovar konkukian str. 97-27] gi|81696708|sp|Q6HF46|MUTS_BACHK RecName: Full=DNA mismatch repair protein mutS gi|49329922|gb|AAT60568.1| DNA mismatch repair protein [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 890 Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust. Identities = 274/829 (33%), Positives = 463/829 (55%), Gaps = 57/829 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R + IPMCG Sbjct: 5 TPMIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 65 VPYHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTI 119 Query: 146 SPTDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEK 202 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 120 DEKENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DS 178 Query: 203 ELSHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 S E L ETL A A P +H + N++ Sbjct: 179 SFSKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLI-------- 221 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQS 313 A +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + S Sbjct: 222 KAVGRLFNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGS 278 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T GGR+ + + PL +I RL+ + F+ + L +++ LK D Sbjct: 279 LLWLLDKTKTAMGGRMLKQWMERPLIQKERIEERLEMVETFVNDYFLREDLKEKLKEVYD 338 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSL 431 + R ++ G +D+ +R + IL L N L + +SL Sbjct: 339 LERLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPC----ESL 394 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + L + ++ P +DG ++DG + LD+ R + K IA L+ + + T IK+L Sbjct: 395 TELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGIKSL 454 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 KI +N GY+IEVT ++ L + R+ +QT++N RF T EL + E I A Sbjct: 455 KIGYNRIFGYYIEVTKANLGAL-----PEGRYERKQTLANAERFITDELKEKETLILEAE 509 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 510 EKIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTKRE 569 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++RQ A Sbjct: 570 IFIKDGRHPVVEKVL---NGKLYVPNDCIMPENMD-----VFLITGPNMSGKSTYMRQLA 621 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 L+ +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ +S Sbjct: 622 LVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERS 681 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 ++ DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L SL + N + Sbjct: 682 LILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEDSLDQLKNVHVS 741 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 742 AIEENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 790 >gi|330824005|ref|YP_004387308.1| DNA mismatch repair protein mutS [Alicycliphilus denitrificans K601] gi|329309377|gb|AEB83792.1| DNA mismatch repair protein mutS [Alicycliphilus denitrificans K601] Length = 870 Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust. Identities = 285/894 (31%), Positives = 460/894 (51%), Gaps = 48/894 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L TPMM QY+ +K+ +PD+L+ YRMGDFYELF+ DA A+R L ITLT+RG+ G+ Sbjct: 5 DLTEHTPMMAQYLALKAQHPDTLLLYRMGDFYELFYADAEKAARLLDITLTQRGQSAGQP 64 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 + M GVP H +Y+ +LI++G +AI EQ+ + K V R VVR+VTPGTLT Sbjct: 65 VTMAGVPFHALENYLGRLIRLGESVAIAEQV-----GEVGAAKGPVERKVVRVVTPGTLT 119 Query: 141 EDQLLSPTDSNYLMAVAR-IRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 + +LL + L+AV + R +AW+ ++ G+ +++ L + + RI P E+I Sbjct: 120 DSELLPDKSESVLLAVHQGARARCGLAWLAVTQGVVQLAECTQAELGAWLARIAPSELIH 179 Query: 200 S-------EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSF 252 S E++L+ +F ++ +P+ FD ++ ++ ++ ++ + + Sbjct: 180 SAGITQRFEEQLAGLRQGGMFACPMSL---RPDWQFDAALGRRKLLEHLGAASLQAWNAE 236 Query: 253 S-QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 Q AAAA + Y + TQ + + + + A R NLE+++TL G Sbjct: 237 GLQDAHAAAAALLQYAEHTQGRALSHVHGVRVQQSDELIHLPLATRRNLELVKTLRGEDA 296 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI---L 368 +L +D +TG G RL + P D RL + P Q + L Sbjct: 297 PTLFSLLDTCMTGMGSRLLKTWLLEPRRDRGDARRRLAATQALRGTGGGQGPWQLLRGAL 356 Query: 369 KSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP 428 K DV R +R+ + + P+++ + ++ + + PE + + P Sbjct: 357 KGVSDVERITARIALRQVRPRELVALCSTLQKSELLAQ---SSQAPEAFLAQIFNDLQPP 413 Query: 429 QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 L + + ++ RDGG + G DA LDE R++++ + L+ + T I Sbjct: 414 AECTALLRAAILEEPAALVRDGGVIAPGFDAELDELRAIQNNCDGFLLDLETREKARTGI 473 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 NL+++ N G++IEVTSS + D + RQT+ N RF T EL E++ Sbjct: 474 PNLRVQFNKVHGFYIEVTSSHVDKVPGD------YRRRQTLKNAERFITPELKSFEDKAL 527 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 +A L E +E + + + L +Q +A +D+ LA + ++C P Sbjct: 528 SAQERGLAREKWLYEQVLDQLQPHVPRLTRLAQALAALDVLCCLAERSLTLDWCAPQFVA 587 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 ++ GRHP+V+ L + SS FI N L+ + ++ ++TGPNMGGKST++R Sbjct: 588 EPCIDIEAGRHPVVQARLAETSSGAFIPNHTRLNA-----NTRMQIITGPNMGGKSTYMR 642 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q ALIV++A MGS+VPA+ +G +D + +R+G+AD+LA+ +STFM+EM E A IL+ AT Sbjct: 643 QVALIVLLASMGSHVPATACRLGPIDAIHTRIGAADDLANAQSTFMLEMTEAAQILHAAT 702 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA 788 S V++DEIGRGT+T DGL++A +LH+ + L ATH+ ELT+LS + N Sbjct: 703 PHSLVLMDEIGRGTSTFDGLALASGIATHLHDRTKAFTLFATHYFELTELSARHQHAVNV 762 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 + ++S I+FLH++ PG A SYGIQV KLAG+P V+ A L E+ + Sbjct: 763 HVGATESGHDIVFLHEIQPGPASRSYGIQVAKLAGVPAAVLHHARHTLAALEERAGEDDL 822 Query: 849 DMRLY----YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L+ PE+Q + +N D +SP AL LY +K Sbjct: 823 QVDLFAPPPAPEVQAASPVEA----------ALAQINPDALSPREALDALYQLK 866 >gi|30263775|ref|NP_846152.1| DNA mismatch repair protein MutS [Bacillus anthracis str. Ames] gi|47529195|ref|YP_020544.1| DNA mismatch repair protein MutS [Bacillus anthracis str. 'Ames Ancestor'] gi|49186619|ref|YP_029871.1| DNA mismatch repair protein MutS [Bacillus anthracis str. Sterne] gi|165872427|ref|ZP_02217062.1| DNA mismatch repair protein MutS [Bacillus anthracis str. A0488] gi|167635842|ref|ZP_02394151.1| DNA mismatch repair protein MutS [Bacillus anthracis str. A0442] gi|167639793|ref|ZP_02398062.1| DNA mismatch repair protein MutS [Bacillus anthracis str. A0193] gi|170687825|ref|ZP_02879039.1| DNA mismatch repair protein MutS [Bacillus anthracis str. A0465] gi|170706805|ref|ZP_02897263.1| DNA mismatch repair protein MutS [Bacillus anthracis str. A0389] gi|177652141|ref|ZP_02934687.1| DNA mismatch repair protein MutS [Bacillus anthracis str. A0174] gi|190568426|ref|ZP_03021333.1| DNA mismatch repair protein MutS [Bacillus anthracis Tsiankovskii-I] gi|196038192|ref|ZP_03105501.1| DNA mismatch repair protein MutS [Bacillus cereus NVH0597-99] gi|227813323|ref|YP_002813332.1| DNA mismatch repair protein MutS [Bacillus anthracis str. CDC 684] gi|229601639|ref|YP_002868011.1| DNA mismatch repair protein MutS [Bacillus anthracis str. A0248] gi|254683522|ref|ZP_05147382.1| DNA mismatch repair protein MutS [Bacillus anthracis str. CNEVA-9066] gi|254722043|ref|ZP_05183832.1| DNA mismatch repair protein MutS [Bacillus anthracis str. A1055] gi|254735809|ref|ZP_05193515.1| DNA mismatch repair protein MutS [Bacillus anthracis str. Western North America USA6153] gi|254739665|ref|ZP_05197359.1| DNA mismatch repair protein MutS [Bacillus anthracis str. Kruger B] gi|254751061|ref|ZP_05203100.1| DNA mismatch repair protein MutS [Bacillus anthracis str. Vollum] gi|254759379|ref|ZP_05211404.1| DNA mismatch repair protein MutS [Bacillus anthracis str. Australia 94] gi|44888189|sp|Q81WR3|MUTS_BACAN RecName: Full=DNA mismatch repair protein mutS gi|254766612|sp|C3P5H5|MUTS_BACAA RecName: Full=DNA mismatch repair protein mutS gi|254766613|sp|C3L822|MUTS_BACAC RecName: Full=DNA mismatch repair protein mutS gi|30258419|gb|AAP27638.1| DNA mismatch repair protein MutS [Bacillus anthracis str. Ames] gi|47504343|gb|AAT33019.1| DNA mismatch repair protein MutS [Bacillus anthracis str. 'Ames Ancestor'] gi|49180546|gb|AAT55922.1| DNA mismatch repair protein MutS [Bacillus anthracis str. Sterne] gi|164711865|gb|EDR17407.1| DNA mismatch repair protein MutS [Bacillus anthracis str. A0488] gi|167512194|gb|EDR87571.1| DNA mismatch repair protein MutS [Bacillus anthracis str. A0193] gi|167528799|gb|EDR91557.1| DNA mismatch repair protein MutS [Bacillus anthracis str. A0442] gi|170128223|gb|EDS97092.1| DNA mismatch repair protein MutS [Bacillus anthracis str. A0389] gi|170668141|gb|EDT18890.1| DNA mismatch repair protein MutS [Bacillus anthracis str. A0465] gi|172082510|gb|EDT67575.1| DNA mismatch repair protein MutS [Bacillus anthracis str. A0174] gi|190560430|gb|EDV14408.1| DNA mismatch repair protein MutS [Bacillus anthracis Tsiankovskii-I] gi|196030600|gb|EDX69198.1| DNA mismatch repair protein MutS [Bacillus cereus NVH0597-99] gi|227007689|gb|ACP17432.1| DNA mismatch repair protein MutS [Bacillus anthracis str. CDC 684] gi|229266047|gb|ACQ47684.1| DNA mismatch repair protein MutS [Bacillus anthracis str. A0248] Length = 892 Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust. Identities = 273/829 (32%), Positives = 465/829 (56%), Gaps = 57/829 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R + IPMCG Sbjct: 5 TPMIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 65 VPYHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTI 119 Query: 146 SPTDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEK 202 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 120 DEKENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DS 178 Query: 203 ELSHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 S E L ETL A A P +H + N++ + ++ Sbjct: 179 SFSKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLIKAVGRL-- 227 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQS 313 +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + S Sbjct: 228 ------FNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGS 278 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T GGR+ + + PL +I RL+ + F+ + L +++ LK D Sbjct: 279 LLWLLDKTKTAMGGRMLKQWMERPLIQKERIEERLEMVETFVNDYFLREDLKEKLKEVYD 338 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSL 431 + R ++ G +D+ +R + IL L N L + +SL Sbjct: 339 LERLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPC----ESL 394 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + L + ++ P +DG ++DG + LD+ R + K IA L+ + + T IK+L Sbjct: 395 TELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGIKSL 454 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 KI +N GY+IEVT ++ L + R+ +QT++N RF T EL + E I A Sbjct: 455 KIGYNRIFGYYIEVTKANLGAL-----PEGRYERKQTLANAERFITDELKEKETLILEAE 509 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 510 EKIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTKRE 569 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++RQ A Sbjct: 570 IFIKDGRHPVVEKVL---NGKLYVPNDCIMPENMD-----VFLITGPNMSGKSTYMRQLA 621 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 L+ +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ +S Sbjct: 622 LVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERS 681 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 ++ DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L SL + N + Sbjct: 682 LILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEDSLDQLKNVHVS 741 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 742 AIEENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 790 >gi|167627358|ref|YP_001677858.1| DNA mismatch repair protein MutS [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|189030724|sp|B0TX99|MUTS_FRAP2 RecName: Full=DNA mismatch repair protein mutS gi|167597359|gb|ABZ87357.1| DNA mismatch repair protein MutS [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 848 Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust. Identities = 301/887 (33%), Positives = 471/887 (53%), Gaps = 52/887 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 + + + TPM++QY++IKS PD L+FYRMGDFYELFFDDA A+ L ITLT RGK G Sbjct: 2 QEVSNHTPMIQQYLKIKSQYPDILLFYRMGDFYELFFDDAKNAAELLDITLTARGKSNGD 61 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H A YI K++K G +AICEQI P +K V R V R++TP T+ Sbjct: 62 SIPMAGVPYHAAEGYIAKIVKKGLSVAICEQIGDP-----STSKGPVERQVTRIITPATV 116 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKIST-SNHDRLISDIMRIDPREI 197 +E+ L + L+++ ++ IA+ + G I I+T +N L + I+++ P+EI Sbjct: 117 SEEAFLDSNQDSILVSIYEKNNKYHIAYTSYTQGKIHLINTVTNSSDLKNQILKLSPQEI 176 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 I + L K++F V V + F + + + + N + + + + Sbjct: 177 ITNSNSLVE---KNIFNK--PVKVLEEWYFSNFEAKKHILNSFDNSFANNILNLYKKEQL 231 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 T + ++Y+ T I ++ Q+ L ID +R+NLE L + + SLL Sbjct: 232 TVIGSILAYLTNTLKSTPKHISDILLDEDQNILNIDINSRNNLE----LDNNSKSSLLNI 287 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D T G RL +P D KI+ R + I F Q+ + IQ IL D+ R Sbjct: 288 MDKCKTSLGSRLLRRYFKNPTRDLNKISLRHNVIKSFKQHHYFLK-IQDILSYINDIERI 346 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEKLKKLPQSLEKTL 435 +SR+ +G +PKD+ + + + +L K + E + + ++ +L K L Sbjct: 347 ISRVALGTVKPKDLVSLNSSLEQLPKLKSLLEKINTSEIININNHIHQIDELT----KLL 402 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + + D+ P RDGG ++ G D LDE R L+D S + + ++T I LK+ + Sbjct: 403 NKAIVDNPPMTIRDGGVIKHGFDQELDELRGLKDNSYDFLLKFETLQKQKTGINTLKVGY 462 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+IE++ A + + +I RQT+ R+ T EL E++I +A AL Sbjct: 463 NRVHGYYIELSKQYADKVPTE------YIRRQTLKASERYITDELKAFEDKILSAKEKAL 516 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 E ++ L N ++E + + IA ID+ A A + N +P + + +K Sbjct: 517 AREKLIYDTLLNKVLEYYSQIQQTAASIAKIDVLANFAERAIKLNLNQPKFNKTGKLDIK 576 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 + RH +E+ + + PFI ND LS ++ L ++TGPNMGGKST++RQ A ++ Sbjct: 577 EARHLAIEQNIDE----PFIPNDTLLST----DTYTLEIITGPNMGGKSTYMRQVAQLIF 628 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +A +GS+VPASYA IG +D +++R+G++D+++SGRSTFMVEM ETA ILN AT +S VI+ Sbjct: 629 LAYIGSFVPASYADIGDIDTIYTRIGASDDISSGRSTFMVEMTETAYILNNATKKSLVIM 688 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+A A E + L ATH+ ELT+L N + + Sbjct: 689 DEIGRGTSTFDGLSLAKACAEKFAKIG-AMTLFATHYFELTELVNQYPNTKNIHFEAKEY 747 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE----KLYHHNQKDMR 851 + I F+HK + G A SYGIQV KLAG+ V+ A L E KL +Q Sbjct: 748 KDNIYFMHKAVAGAAKKSYGIQVAKLAGISKDVLDSAKKNLANLEKGQDKLDTIDQPQQN 807 Query: 852 LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 L ++ KN++ E+++ ++++ ++P+ AL L+ +K Sbjct: 808 L---QLDQTPQKNHIK-------ERLETIDINSITPIEALNILFELK 844 >gi|224534129|ref|ZP_03674709.1| DNA mismatch repair protein MutS [Borrelia spielmanii A14S] gi|224514554|gb|EEF84868.1| DNA mismatch repair protein MutS [Borrelia spielmanii A14S] Length = 862 Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust. Identities = 284/825 (34%), Positives = 464/825 (56%), Gaps = 49/825 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K+ TPMMRQY++IK D+++F+R+G FYE+FF+DA+ AS+ L +TLTKR +++P Sbjct: 3 KNVTPMMRQYLDIKKKYKDAIIFFRVGSFYEMFFNDAIEASKLLNLTLTKR-----ENVP 57 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP HT+ YI+KLI ++AICEQ A + + R VV ++TPG + ++ Sbjct: 58 MCGVPCHTSKEYIRKLILFDKKVAICEQ------ASNSTSGGPLEREVVEVITPGVIIDE 111 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDIST---GIFKISTSNHDRLISDIMRIDPREIIF 199 L+ +NYL+A++ + ++ ++ID+ST GI +S ++L D+ + P+EII Sbjct: 112 DFLNDDVNNYLVAISDYKNYYSFSYIDLSTSSLGIMFYESSFFEKLKRDLEKYSPKEIIV 171 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 SE + EY + P D ++ I +++NI + + G F + EK Sbjct: 172 SEN--FYYEYSEKLNLSRFLINRVPAWHLDKDVAIKTIKEHFNILGLSSLG-FDE-EKPY 227 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQS---TLFIDSAARSNLEILRTLSG-SREQSLL 315 + I + K + ++ DI + +F+D + NLE+++ + S + SL Sbjct: 228 YISIFLIINHIKNNLKNLLSNIDKIDINNDSLYMFLDDVTQVNLELVKNNNDFSSQYSLY 287 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 ++ T G RL E I +P+ + ++INTRLD + FF +N L +++ + D+ Sbjct: 288 SVLNDCKTAMGKRLLREFILNPILNISEINTRLDHVEFFCKNISLTMTLREAFINIWDIE 347 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEK--LKKLPQSLEK 433 R +SR+++ R KD I + + LF K++ E+ + K+ + Sbjct: 348 RIVSRIQMKRYIKKDFLFIEKALSVFFLVKKLFDKHNFDYWNFDKFEEDSVSKVYFLINS 407 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 +SS SD+L ++ G D LD + L+ + + I +KI NLKI Sbjct: 408 AISSS-SDEL---------IKRGYDLKLDSLKDLKINANKYIDEYLESEKRLSKINNLKI 457 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 + NN G F EVT S+ + + F+ QT+++ R+ T +LI LE I NA +S Sbjct: 458 RKTNNRGLFFEVTKSNYA------QVPPYFMESQTLNSSKRYKTEKLISLEVNINNAEDS 511 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + E E F+ +++ +++ ++ L ++ A ID+ + LAK+ Y RP++ Sbjct: 512 VVSFEQEIFDEIASNVVKHNKVLKKVAEFFAYIDLVVNFGYLAKKNEYKRPVLTCDKEIF 571 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 ++ RHP+VE+ +K +++ F N ++ L+TGPNM GKST+LRQ ALI Sbjct: 572 LEKSRHPVVERYVK--NTEIFTENFVRIN-----KERYFCLITGPNMAGKSTYLRQVALI 624 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MAQ+GS+VPAS A IGI DK+F R+G++DNLA G STF+VEM ETA+IL AT +S + Sbjct: 625 TLMAQIGSFVPASKAVIGITDKIFCRIGASDNLAKGESTFLVEMNETANILRNATEKSLI 684 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 I+DE+GRGT+T DGL+IA++ IEY+ E + R L ATHFHEL+ ++ + F N ++++ Sbjct: 685 IMDEVGRGTSTNDGLAIAYSIIEYILEYIKARSLFATHFHELSAINH--EAFINLSMKIE 742 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKT 838 ++FL +V + +SYGI V ++AGLP V+ RA IL++ Sbjct: 743 KQGNDLVFLREVEEKPSLNSYGIYVARIAGLPLRVVDRANVILQS 787 >gi|218904897|ref|YP_002452731.1| DNA mismatch repair protein MutS [Bacillus cereus AH820] gi|226723050|sp|B7JJ47|MUTS_BACC0 RecName: Full=DNA mismatch repair protein mutS gi|218535511|gb|ACK87909.1| DNA mismatch repair protein MutS [Bacillus cereus AH820] Length = 892 Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust. Identities = 273/829 (32%), Positives = 465/829 (56%), Gaps = 57/829 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R + IPMCG Sbjct: 5 TPMIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 65 VPYHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTI 119 Query: 146 SPTDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEK 202 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 120 DEKENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DS 178 Query: 203 ELSHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 S E L ETL A A P +H + N++ + ++ Sbjct: 179 SFSKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLIKAVGRL-- 227 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQS 313 +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + S Sbjct: 228 ------FNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGS 278 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T GGR+ + + PL +I RL+ + F+ + L +++ LK D Sbjct: 279 LLWLLDKTKTAMGGRMLKQWMERPLIQKERIEERLEMVETFVNDYFLREDLKEKLKEVYD 338 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSL 431 + R ++ G +D+ +R + IL L N L + +SL Sbjct: 339 LERLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPC----ESL 394 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + L + ++ P +DG ++DG + LD+ R + K IA L+ + + T IK+L Sbjct: 395 TELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGIKSL 454 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 KI +N GY+IEVT ++ L + R+ +QT++N RF T EL + E I A Sbjct: 455 KIGYNRIFGYYIEVTKANLGAL-----PEGRYERKQTLANAERFITDELKEKETLILEAE 509 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 510 EKIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTKRE 569 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++RQ A Sbjct: 570 IFIKDGRHPVVEKVL---NGKLYVPNDCIMPENMD-----VFLITGPNMSGKSTYMRQLA 621 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 L+ +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ +S Sbjct: 622 LVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERS 681 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 ++ DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L SL + N + Sbjct: 682 LILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEDSLDQLKNVHVS 741 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 742 AIEENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 790 >gi|116618670|ref|YP_819041.1| DNA mismatch repair protein MutS [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122271130|sp|Q03VV4|MUTS_LEUMM RecName: Full=DNA mismatch repair protein mutS gi|116097517|gb|ABJ62668.1| DNA mismatch repair protein MutS [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 854 Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust. Identities = 306/888 (34%), Positives = 479/888 (53%), Gaps = 63/888 (7%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 + TPMM QY EIKS PD+ VFYR+GDFYELF DDA+L ++ L +TLT R K+ +PM Sbjct: 5 AETPMMVQYHEIKSQYPDAFVFYRLGDFYELFEDDAVLGAKLLELTLTARNKNSENPVPM 64 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G+P H A +YI L+ GH++AI EQ+E P AK +V+R+VV+L+TPGT Sbjct: 65 AGIPHHAAQNYIDILVDQGHKVAIVEQMEDPATAK-----GMVKRDVVQLITPGTKLNSG 119 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIF-SE 201 + + +NYL AV + +++ID+STG K +T +I ++ ++ +EI+ + Sbjct: 120 MGNDKQNNYLAAVLPRDNRYFLSYIDLSTGELKTTTLKRFSDVIDELSSLEVKEIVLLKD 179 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 E + + G V Q +V N+ +F + V + A Sbjct: 180 DETTELGIANKLAERGLVISTQSDV---------------NVNATVSFLTQPLVHENEAQ 224 Query: 262 AA---ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKT 317 ++YI TQ N I + + + L + R+NL++++ + + SLL Sbjct: 225 VTTILLNYIFDTQRRNLDHIIPAQNYERLAYLKFNQDTRTNLDLVKNARTKKKAGSLLGL 284 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILI-NPIQKILKSSPDVPR 376 ID + T GGRL + + PL D+ IN RLD I F QN + +Q LKS D+ R Sbjct: 285 IDETKTAMGGRLLKQWLLRPLRDTEDINERLDVIEAF-QNEFFVRGALQDHLKSVYDLER 343 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 +R +G +++ ++ + S I + L + L A ++L+ + L + Sbjct: 344 LAARAAMGTMNARELVQLKRSL-SAIPGMKSVLSSS-QGILNHASQRLEDM-SDLAGLID 400 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + DD P R+G + DG D+ +DE R++ Q+++ +A L+ T I +LK+K+N Sbjct: 401 EAIVDDPPISIREGDIINDGFDSKIDEYRNVLSQNQKWLAQLESDERAATGINSLKVKYN 460 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 N G+FIEV+ ++ S L++ R+ +QT++N RF T EL + E I A Sbjct: 461 KNFGFFIEVSRANVSKLEEG-----RYERKQTLTNAERFVTPELKEHERLINEAQLKRTE 515 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 E E F + + L ++ +A +D+ +LA +A + RP + +K Sbjct: 516 REYELFITIRERVKANISRLQKLARQVAQLDVLASLADVADNNRFVRPTFTDDNIINIKQ 575 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE L+ + F+AND +L D+N+ + L+TGPNM GKST++R+ ALIVI+ Sbjct: 576 GRHPVVEAILE---AGEFVANDVNL----DQNTA-MQLITGPNMAGKSTYMRELALIVIL 627 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 QMGS+VPA A + I D++F+R+G+ D++A G+STFMVEM E L +A+ S ++ D Sbjct: 628 GQMGSFVPAESAVLPIFDQIFTRIGANDDMAMGQSTFMVEMAEANLALQEASAHSLILFD 687 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL-QVSDS 795 E+GRGTAT DG+++A A IEYL + L +TH+HELT L+ + N + V D Sbjct: 688 ELGRGTATYDGMALAQAIIEYLDAHVHAKTLFSTHYHELTALADKHENIKNVHVGAVEDE 747 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 + + FLH++ G AD SYGI V LAGLP+ +I+ A IL E NQ+ + P Sbjct: 748 SGELHFLHQIQQGPADKSYGIHVAALAGLPDELIANATTILSGLE-----NQEAL---VP 799 Query: 856 E-----IQTKESKNNLS----KNDKLFVEKIKCLNLDEMSPLTALKTL 894 E + + + N+S K + LF +K+ +N+ M+PL AL L Sbjct: 800 EPKASGLSEQVALFNVSDVDPKTETLF-QKLDSINISTMTPLEALNVL 846 >gi|71275401|ref|ZP_00651687.1| MutS 1 protein [Xylella fastidiosa Dixon] gi|71898573|ref|ZP_00680744.1| MutS 1 protein [Xylella fastidiosa Ann-1] gi|170730376|ref|YP_001775809.1| DNA mismatch repair protein MutS [Xylella fastidiosa M12] gi|71163701|gb|EAO13417.1| MutS 1 protein [Xylella fastidiosa Dixon] gi|71731697|gb|EAO33757.1| MutS 1 protein [Xylella fastidiosa Ann-1] gi|167965169|gb|ACA12179.1| mismatch repair protein [Xylella fastidiosa M12] Length = 858 Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust. Identities = 297/890 (33%), Positives = 479/890 (53%), Gaps = 46/890 (5%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + TP+M+QY K+ PD L+F+RMGDFYELF DA A+R L ITLT+RG G I Sbjct: 1 MAEHTPLMKQYFAAKAEYPDLLLFFRMGDFYELFHQDARKAARLLDITLTQRGSSGGTPI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PM GVPVH Y+ +LI +G +AICEQI P AK LV R VVR+VTPGT+T+ Sbjct: 61 PMAGVPVHAYEGYLARLIALGESVAICEQIGDPGLAK-----GLVERKVVRIVTPGTITD 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFS 200 + LL LMA++R + + +AW D++ G F ++ + + L +++ R++P E++ Sbjct: 116 EALLEERRDTLLMALSRTKNCYGLAWADLAGGRFLVNEVDSEEALEAELARLEPAELLLP 175 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 +++ + + V +P FD ++ ++ + + FG + + TAA Sbjct: 176 DED----AWPEYLQQRSGVR-RRPPWLFDADSGRRKLLAFFKLHDLSGFGIENNPQATAA 230 Query: 261 AAAIS-YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A A+ YI++TQ P + E + + +++A R +LE+ + G +LL +D Sbjct: 231 AGALLGYIEETQKQRLPHLTSITMETVGEAITMNAATRRHLELDTRVDGESRHTLLGVLD 290 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 ++T GGRL + PL + R ++ I L N +++ + D+ R L+ Sbjct: 291 STVTPMGGRLLRRWLHRPLRLREVVRQRHAAVGSMIYID-LDNKLRETFRRLGDMERILT 349 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ + P+DI+ +RD + + L +D P LR +L + S L + Sbjct: 350 RVALRSARPRDISTLRDSLSLLPRLRELLNASDSPR-LRVLYAELGE-HDSTASLLVKAV 407 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 ++ P DGG + D LDE R L + + + + L+ + E + I LK+ +N Sbjct: 408 AEQPPLKLTDGGVIAPEYDVELDELRKLSNNADQFLIDLETRERESSGISTLKVGYNRVH 467 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IE++ A ++ + RQT++N R+ T EL E+++ +A + AL E Sbjct: 468 GYYIEISKGQAD------KAPVHYTRRQTLTNAERYITEELKAFEDKVLSARDRALAREK 521 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 +E L + + Q E L + ++ +D+ + A A+ ++ RP +++++ ++ GRH Sbjct: 522 LLYEQLLDTVGAQLEPLKRCAAALSELDVLVCFAERAQTLDWARPELEHTSCLHIEGGRH 581 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE +Q+ F ND DL ++ ++TGPNMGGKST++RQNALIV++A + Sbjct: 582 PVVEAVREQR----FEPNDIDLHPER-----RMLVITGPNMGGKSTYMRQNALIVLLAYI 632 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPAS A IG +D++ +R+G+ D+LA G+STFM+EM ET+ IL+ AT QS V++DEIG Sbjct: 633 GSYVPASRALIGPIDRIMTRIGAGDDLARGQSTFMLEMTETSYILHHATAQSLVLMDEIG 692 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK-----SLKRFHNATLQVSD 794 RGT+T DGL++A A +L NRC L ATH+ ELT L+ L N + Sbjct: 693 RGTSTYDGLALADAVARHLAHINRCYTLFATHYFELTALADETYEGGLSGIANVHFDAVE 752 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 +E ++F+H V G A+ S+G+QV LAGLP ++ A L E Q+ + Sbjct: 753 HSERLVFMHTVKDGPANRSFGLQVAALAGLPAAAVAHARRRLAELE------QRGRESHV 806 Query: 855 PEI-----QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 EI + + + E + L+ DE++P AL+ LY +KA Sbjct: 807 SEITPLALDAPQQCSLFASAPSAAQEALVALHPDELTPKQALEALYRLKA 856 >gi|120610731|ref|YP_970409.1| DNA mismatch repair protein MutS [Acidovorax citrulli AAC00-1] gi|189030433|sp|A1TNU7|MUTS_ACIAC RecName: Full=DNA mismatch repair protein mutS gi|120589195|gb|ABM32635.1| DNA mismatch repair protein MutS [Acidovorax citrulli AAC00-1] Length = 890 Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust. Identities = 290/887 (32%), Positives = 469/887 (52%), Gaps = 34/887 (3%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 + + TPMM+QY+ +K+ PD+LVFYRMGDFYELF+ DA A+R L ITLT+RG+ G+ Sbjct: 23 DFSAHTPMMQQYLALKAGYPDTLVFYRMGDFYELFWADAEKAARLLDITLTQRGQSAGQP 82 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 + M GVP H +Y+ +LI++G +AICEQ+ + K V R VVR+VTPGTLT Sbjct: 83 VVMAGVPFHALENYLGRLIRMGESVAICEQV-----GEVGAAKGPVERKVVRVVTPGTLT 137 Query: 141 EDQLLSPTDSNYLMAVARI-RTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 + +LL + L+AV + R +AW+ ++ G+ ++ HD + + I RI P E+I+ Sbjct: 138 DSELLPDKAESMLLAVHQAPRARCGLAWLSVTQGVVHLAECTHDEVGTWIARIGPSEVIY 197 Query: 200 SEKELSHAEYKSLFETLGNVAVA----QPNVFFDHSISESRIADYYNITTVDTFGSF-SQ 254 S E + G V +P+ FD ++ ++ + +++ + + Sbjct: 198 SAGVTERFEQQLQALRQGGVLSCPLSLRPDWQFDGALGARKLLEQLGAASLNAWDAQDLA 257 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSL 314 A+AA +SY + TQ I + + + A R NLE+ RTL G +L Sbjct: 258 HAHAASAALLSYAEHTQGRALTHIHAVRVQKNDELIALPPATRRNLELTRTLRGEDAPTL 317 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI---LKSS 371 +D +TG G RL + P D T+ RL + + Q + L+ Sbjct: 318 FSLLDTCMTGMGSRLLKTWLLEPRRDRTEARARLAATAELRGDHGGTGSWQALRAALRGV 377 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSL 431 DV R +R+ + + P+++ + + I ++ + L + P + Sbjct: 378 SDVERITARIALRQVRPRELVALCKTLHKAEQIAA---EHRWQDPLLAGISGDLHAPPAC 434 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 L+ + ++ RDGG + DG DA LDE R +++ + +L+ + T I NL Sbjct: 435 GALLAGAILEEPSALVRDGGVIADGFDAELDELRGIQNHCDDFLLALETREKARTLIPNL 494 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 +++ N G++IEVTSS + D + RQT+ N RF T EL E++ +A Sbjct: 495 RVQFNKVHGFYIEVTSSYLDRIPDD------YRRRQTLKNAERFITPELKAFEDKALSAQ 548 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 AL E +E + + + + +L A+Q IA +D ALA + +C P Sbjct: 549 ERALAREKWLYEQVLDQLQQHVPALTRAAQAIAALDALCALAERSLTLGWCAPQFAAEPC 608 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 ++ GRHP+VE L + S+ FI N L+ + ++ ++TGPNMGGKST++RQ A Sbjct: 609 IEIEGGRHPVVEARLAETSAGAFIPNHTRLNA-----NTRMQIITGPNMGGKSTYMRQVA 663 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LIV++A MGS+VPA++ +G +D + +R+G+AD+LA+ +STFM+EM E A IL+ AT S Sbjct: 664 LIVLLASMGSHVPAAHCRLGPIDAIHTRIGAADDLANAQSTFMMEMTEAAQILHAATPHS 723 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 V++DEIGRGT+T DGL++A +LH+ R L ATH+ ELT+L+ N + Sbjct: 724 LVLMDEIGRGTSTFDGLALASGIATHLHDRTRAFTLFATHYFELTELAARHAHAVNVHVG 783 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR 851 ++S I+FLH++ PG A SYGI V +LAG+P V++ A L E+ + + + Sbjct: 784 ATESGSDIVFLHEIQPGPASRSYGIHVARLAGVPAPVLNHARHALSALEERANEGETQVD 843 Query: 852 LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 L+ P +++ +S + ++ ++ D +SP AL LY +K Sbjct: 844 LFAPPPESEAP--GISPVEA----ALQGIHPDSLSPREALDALYQLK 884 >gi|170017652|ref|YP_001728571.1| DNA mismatch repair protein MutS [Leuconostoc citreum KM20] gi|238688975|sp|B1N025|MUTS_LEUCK RecName: Full=DNA mismatch repair protein mutS gi|169804509|gb|ACA83127.1| DNA mismatch repair protein MutS [Leuconostoc citreum KM20] Length = 865 Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust. Identities = 287/822 (34%), Positives = 448/822 (54%), Gaps = 38/822 (4%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 + TPMM QY EIK+ PD+ VFYR+GDFYELF +DA+ ++ L +TLT R K+ +PM Sbjct: 5 ADTPMMVQYHEIKAQYPDAFVFYRLGDFYELFEEDAIQGAKILELTLTARNKNSENPVPM 64 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G+P H A +YI L+ G+++AI EQ+E P AK +V+R+VV+LVTPGT D Sbjct: 65 AGIPHHAAQNYIDILVDQGYKVAIVEQMEDPAVAK-----GMVKRDVVQLVTPGTKMADG 119 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEK 202 +NYL AV + W+IA++D+STG + +T+ + ++ ++ ++ +E++ S+ Sbjct: 120 AGGDKQNNYLAAVLPAKNVWSIAYVDLSTGELRATTTGRFEDVMDELSSLEVKEVVLSKN 179 Query: 203 ELSHAEYK--SLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 +++ E + S G V AQ + S + S + +T S++E T Sbjct: 180 DVATTEQQIASQLGERGIVISAQGTA--EPSATVSFLTQALKVT--------SEIEATTI 229 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 ++YI TQ + I + L + RSNL+++ + + + SLL ID Sbjct: 230 L--LNYIFDTQRRSLDHIVPATSYERLKFLKFNQDTRSNLDLVENMRTKKKAGSLLGLID 287 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T GGRL + + PL +S+ I RLD + F + + +Q LKS D+ R + Sbjct: 288 RTNTAMGGRLLKQWLLKPLRESSDIEARLDLVQSFQNDFLTRGALQDHLKSVYDLERLAA 347 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R +G +++ ++ +R+ I ++ L+ D L A ++L + L + + Sbjct: 348 RAAMGTMNARELVQLKRSLRAIPGIKSVLLQADTT--LSNAGQQLDDMT-DLADLIDVAI 404 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 D+ P R+G + DG D +D R + +++ +A L++ +T I +LK+ +N N Sbjct: 405 VDEPPVSVREGNIINDGFDERIDGYRQVLKDNQQWLAQLEIDERAQTGINSLKVGYNKNF 464 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IEVT ++ L + DR+ QT++N RF T L E+ I A E Sbjct: 465 GYYIEVTKANIGRL-----ATDRYQRLQTLTNAERFVTPALKQHESLIIEAQAKRTEREY 519 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E F + + + +Q IA +D+ +LA +A Q + RP N + GRH Sbjct: 520 ELFVTVREHVKSDISRIQTLAQHIARLDVLSSLADVADNQRFVRPTFTNQHVIHIMQGRH 579 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE L + F+AND L S + L+TGPNM GKST++R+ ALIVI+AQM Sbjct: 580 PVVESIL---DAGDFVANDVILD-----ESINMQLITGPNMAGKSTYMRELALIVILAQM 631 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPA A + I D++F+R+G+ D++A G+STFMVEM E L QAT S V+ DE+G Sbjct: 632 GSFVPADVAELPIFDQIFTRIGANDDMAMGQSTFMVEMAEANDALQQATANSLVLFDELG 691 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGTAT DG+++A A IE+L + + L +TH+HELT L+ + N + + +EG Sbjct: 692 RGTATYDGMALAQAIIEFLDKHIHAKTLFSTHYHELTVLADNHTSIENVHVGAVEDDEGQ 751 Query: 800 I-FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + FLH++ G AD SYGI V LAGLP +I A IL E Sbjct: 752 LHFLHQIQSGPADKSYGIHVAALAGLPKELIDNATSILHDLE 793 >gi|206977880|ref|ZP_03238768.1| DNA mismatch repair protein MutS [Bacillus cereus H3081.97] gi|217961190|ref|YP_002339758.1| DNA mismatch repair protein MutS [Bacillus cereus AH187] gi|226723053|sp|B7HLA3|MUTS_BACC7 RecName: Full=DNA mismatch repair protein mutS gi|206743880|gb|EDZ55299.1| DNA mismatch repair protein MutS [Bacillus cereus H3081.97] gi|217065927|gb|ACJ80177.1| DNA mismatch repair protein MutS [Bacillus cereus AH187] Length = 892 Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust. Identities = 273/829 (32%), Positives = 465/829 (56%), Gaps = 57/829 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R + IPMCG Sbjct: 5 TPMIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 65 VPYHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTI 119 Query: 146 SPTDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEK 202 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 120 DEKENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DS 178 Query: 203 ELSHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 S E L ETL A A P +H + N++ + ++ Sbjct: 179 SFSKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLIKAVGRL-- 227 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQS 313 +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + S Sbjct: 228 ------FNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGS 278 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T GGR+ + + PL +I RL+ + F+ + L +++ LK D Sbjct: 279 LLWLLDKTKTAMGGRMLKQWMERPLIQKERIEERLEMVETFVNDYFLREDLKEKLKEVYD 338 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSL 431 + R ++ G +D+ +R + IL L N L + +SL Sbjct: 339 LERLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPC----ESL 394 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + L + ++ P +DG ++DG + LD+ R + K IA L+ + + T IK+L Sbjct: 395 TELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGIKSL 454 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 KI +N GY+IEVT ++ L + R+ +QT++N RF T EL + E I A Sbjct: 455 KIGYNRIFGYYIEVTKANLGAL-----PEGRYERKQTLANAERFITDELKEKETLILEAE 509 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 510 EKIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTKRE 569 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++RQ A Sbjct: 570 IFIKDGRHPVVEKVL---NGKLYVPNDCIMPENMD-----VFLITGPNMSGKSTYMRQLA 621 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 L+ +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ +S Sbjct: 622 LVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERS 681 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 ++ DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L SL + N + Sbjct: 682 LILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEDSLDQLKNVHVS 741 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 742 AIEENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLITRAKEVLAQLE 790 >gi|296111736|ref|YP_003622118.1| DNA mismatch repair protein [Leuconostoc kimchii IMSNU 11154] gi|295833268|gb|ADG41149.1| DNA mismatch repair protein [Leuconostoc kimchii IMSNU 11154] Length = 865 Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust. Identities = 310/894 (34%), Positives = 473/894 (52%), Gaps = 89/894 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY EIKS PD+ VFYR+GDFYELF +DA+L ++ L +TLT R K+ +PM G Sbjct: 7 TPMMVQYHEIKSQYPDAFVFYRLGDFYELFEEDAVLGAKLLELTLTARNKNSENPVPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H A +YI L+ G+++AI EQ+E P AK +V+R+VV+L+TPGT D Sbjct: 67 IPHHAAKNYIDILVDQGYKVAIVEQMEDPAVAK-----GMVKRDVVQLITPGTKMYDGAG 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIM----RIDPREIIFSE 201 S +NYL A+ WA+A+ID+STG K +T R ++DI+ ++ +E++ + Sbjct: 122 SDKQNNYLAAILPNSDSWALAYIDLSTGELKATTI---RRLTDILDELSSLEVKEVVLRQ 178 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 + + L LG + + +++A N T ++++T A Sbjct: 179 ND-DLTTQQQLATQLGERGL----------VISTQLAIEPNATVSFLTQPLLKIDETKAT 227 Query: 262 AAI-SYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILRT-LSGSREQSLL 315 A + +YI TQ N P I Y ER + L + R+NL+++ + R SLL Sbjct: 228 AMLLNYIFDTQRRNLDHIVPAISY-ER---LAYLKFNQDTRTNLDLVENNRTKKRAGSLL 283 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 ID + T G RL + + PL D I RLD ++ F + +Q LKS D+ Sbjct: 284 GLIDGTHTAMGSRLLKQWVLKPLRDQNDIEDRLDLVDAFRDDFFTRGALQDQLKSVYDLE 343 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R +R +G +++ ++ RS + I ++ A+ + + ++ TL Sbjct: 344 RLAARAAMGTMNARELVQLK---RSLLAI----------PSIKAALAQTTSILKNASDTL 390 Query: 436 SSMLS----------DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE 485 M+ DD P R+G + DG D +D R + ++ +A L+ Sbjct: 391 DDMVDVAGLIEEAIVDDPPISVREGDIINDGFDDKIDNYRRVLQDNQTWLAQLETDERAA 450 Query: 486 TKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 T I +LK+ +N N GYFIEVT ++ S L+++ R+ RQT++N RF T EL E Sbjct: 451 TGIHSLKVGYNKNFGYFIEVTKANISKLEEN-----RYERRQTLTNAERFVTPELKAHER 505 Query: 546 RITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPI 605 I A E E F + + + N +Q IA +D+ LA +A + RP Sbjct: 506 LIIEAQAKRTQREYELFVTVRERVKANISRVQNLAQQIARLDVLSTLADVADNHRFVRPE 565 Query: 606 IDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKST 665 VK GRHP+VE L+ + F+AND L D+N+ + L+TGPNM GKST Sbjct: 566 FTTHNRVCVKQGRHPVVESLLE---AGEFVANDVLL----DENT-TMQLITGPNMAGKST 617 Query: 666 FLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILN 725 ++R+ ALIVI+AQMGS+VPA A + I D++F+R+G+ D++A G+STFMVEM E L Sbjct: 618 YMRELALIVILAQMGSFVPADAAELPIFDQIFTRIGANDDMAMGQSTFMVEMAEANHALQ 677 Query: 726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRF 785 +AT S ++ DE+GRGTAT DG+++A A IE+L + L +TH+HELT L+ Sbjct: 678 EATAHSLILFDELGRGTATYDGMALAQAIIEFLDAHVHAKTLFSTHYHELTVLADQHDSI 737 Query: 786 HNATL-QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE---- 840 N + V D + + FLH++ G AD SYGI V LAGLP T+I++A IL E Sbjct: 738 ENVHVGAVEDESGQLHFLHQIKKGPADKSYGIHVAALAGLPETLITQAKVILTELEAQKS 797 Query: 841 KLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 + H+Q + R Q +++++ LS E++ N+D ++P +KTL Sbjct: 798 SIVTHDQPEER------QLEQTRDQLS-------EQVALFNVDTINP--EIKTL 836 >gi|229012953|ref|ZP_04170118.1| DNA mismatch repair protein mutS [Bacillus mycoides DSM 2048] gi|229061372|ref|ZP_04198718.1| DNA mismatch repair protein mutS [Bacillus cereus AH603] gi|228717911|gb|EEL69557.1| DNA mismatch repair protein mutS [Bacillus cereus AH603] gi|228748207|gb|EEL98067.1| DNA mismatch repair protein mutS [Bacillus mycoides DSM 2048] Length = 884 Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust. Identities = 275/828 (33%), Positives = 467/828 (56%), Gaps = 59/828 (7%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R + IPMCGVP Sbjct: 1 MIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 61 HHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTIDE 115 Query: 148 TDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEKEL 204 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 116 KENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DSTF 174 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTV-----DTFGSFSQVEKTA 259 S E L ETL +IS Y + TT+ S SQ + Sbjct: 175 SKDELNKLTETL------------KMTIS------YEDATTIPEGLEHLVKSVSQAKLIK 216 Query: 260 AAAAI-SYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSL 314 A + +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + SL Sbjct: 217 AIGRLFNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGSL 273 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D + T GGR+ + + PL K+ RL+ + F+ + L +++ LK D+ Sbjct: 274 LWLLDKTKTAMGGRMLKQWMERPLIQKEKVEERLEMVETFVNDYFLREDLKEKLKEVYDL 333 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSLE 432 R ++ G +D+ +R + IL L N L + +SL Sbjct: 334 ERLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPC----ESLT 389 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 + L + ++ P +DG ++DG + LD+ R + K IA L+ + + T +K+LK Sbjct: 390 ELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGVKSLK 449 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 I +N GY+IEVT ++ + L + R+ +QT++N RF T EL + E I A Sbjct: 450 IGYNRIFGYYIEVTKANLAAL-----PEGRYERKQTLANAERFITDELKEKETLILEAEE 504 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ N Sbjct: 505 KIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTNKREI 564 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++RQ AL Sbjct: 565 FIKDGRHPVVEKVL---NGKLYVPNDCIMPEKMD-----VFLITGPNMSGKSTYMRQLAL 616 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 + +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ +S Sbjct: 617 VTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERSL 676 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 ++ DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L +SL + N + Sbjct: 677 ILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLDQLKNVHVSA 736 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N ++FLHK+ G AD SYGI V +LA LP ++I+RA ++L E Sbjct: 737 IEENGKVVFLHKIQDGAADKSYGIHVAQLAELPESLIARAKEVLAQLE 784 >gi|328553401|gb|AEB23893.1| DNA mismatch repair protein MutS [Bacillus amyloliquefaciens TA208] Length = 861 Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust. Identities = 287/903 (31%), Positives = 487/903 (53%), Gaps = 72/903 (7%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + S TPM++QY++IK+ D+ +F+R+GDFYE+FF+DA AS+ L ITLT R I Sbjct: 1 MASYTPMIQQYLKIKAEYQDAFLFFRLGDFYEMFFEDAKKASQELEITLTSRDGGSADKI 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A YI++LIK G+++AICEQ E P + K +V+R VV+L+TPGT+ + Sbjct: 61 PMCGVPYHSAAAYIEQLIKKGYKVAICEQTEDP-----KAAKGVVKREVVQLITPGTVMD 115 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGI-FKISTSNHDRLISDIMRIDPREIIFS 200 + + +++N++ +V+ + +A D++TG + + ++S+I + +EI+ S Sbjct: 116 GKGIHESENNFIASVSAFPGGYGLALSDLTTGENLAVFIERIEDVMSEIYSVGAKEIVVS 175 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITT-------VDTFGSFS 253 K + L E G SI + ++ D I +TF Sbjct: 176 SK-FNENTAAQLKERCGATI----------SIEDGKMTDRIEIAKHLPGEELTETFMRL- 223 Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQ 312 +Y++KTQ + + + +++ + ID ++ NLE+ T+ S S++ Sbjct: 224 ----------YTYLQKTQKRSLDHLQPVQVYELEEAMKIDLYSKRNLELTETIRSKSKKG 273 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 SLL +D + T GGRL + I PL +++I R + + I + +++ LK Sbjct: 274 SLLWLLDETKTAMGGRLLKQWIDRPLIRASQIEERQEMVETLINHLFEREDLRERLKEVY 333 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQS 430 D+ R R+ G +D+ +++ ++ +I L L + +E G ++ Sbjct: 334 DLERLAGRVAFGNVNARDLIQLKESLKQVPSIKELVGSLNHKKAKERAGLIDPCG----D 389 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L L L ++ P ++G ++DG LDE R K IA L+ + T I++ Sbjct: 390 LLDLLEDALHENPPLSLKEGNLIKDGYHQKLDEYRDASKNGKDWIARLEQQERAYTGIRS 449 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ N GY+IEVT ++ +L+ R+ +QT++N R+ T EL + E I A Sbjct: 450 LKVGFNKVFGYYIEVTKANLHLLEDG-----RYERKQTLTNAERYITPELKEKEALILEA 504 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII-DNS 609 N+ +E E F L + + L ++ ++ +D A +++ ++Y +P+ DN Sbjct: 505 ENNICELEYELFAGLREKVKQFIPRLQRLAKQMSELDALQCFATISENRHYTKPVFSDNE 564 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 I +GRHP+VEK + S+ ++ N+C + S ++ L+TGPNM GKST++RQ Sbjct: 565 VKVI--EGRHPVVEKVM---DSQEYVPNNCLMG-----ESREMLLITGPNMSGKSTYMRQ 614 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 AL+ IMAQ+G +VPA A + I D++F+R+G+AD+L SG+STFMVEM+E + + AT Sbjct: 615 IALLSIMAQIGCFVPAKEAVLPIFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIVNATK 674 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 S ++ DEIGRGT+T DG+++A A IEY+H+ + L +TH+HELT L L + N Sbjct: 675 DSLILFDEIGRGTSTYDGMALAQAIIEYVHDHIGAKTLFSTHYHELTVLEDKLPQLKNVH 734 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--------- 840 ++ + N ++FLH++ G AD SYGI V +LA LP+ +ISRA +ILK E Sbjct: 735 VRAEEYNGTVVFLHQIKEGAADKSYGIHVAQLAELPDDLISRAQEILKQLEQSGDKPELP 794 Query: 841 -----KLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 K + ++ + + ++ +S +K +E K +N+ +M+PL A+ +Y Sbjct: 795 AAPEKKPVVKEEPAQLSFFADGEKEQKAPAVSHKEKQVLEAFKSINILDMTPLEAMNEMY 854 Query: 896 AVK 898 ++ Sbjct: 855 KLQ 857 >gi|229134577|ref|ZP_04263387.1| DNA mismatch repair protein mutS [Bacillus cereus BDRD-ST196] gi|228648838|gb|EEL04863.1| DNA mismatch repair protein mutS [Bacillus cereus BDRD-ST196] Length = 884 Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust. Identities = 271/823 (32%), Positives = 468/823 (56%), Gaps = 49/823 (5%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R + IPMCGVP Sbjct: 1 MIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 61 HHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTIDE 115 Query: 148 TDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEKEL 204 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 116 KENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DSTF 174 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E L ETL + + ++ +I+ ++ S SQ + A + Sbjct: 175 SKDELNKLTETL------KMTISYEDTITIPEGLEHL-------VKSVSQAKLIKAIGRL 221 Query: 265 -SYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSLLKTID 319 +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + SLL +D Sbjct: 222 FNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGSLLWLLD 278 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T GGR+ + + PL K+ RL+ + F+ + L +++ LK D+ R Sbjct: 279 KTKTAMGGRMLKQWMERPLIQKEKVEERLEMVETFVNDYFLREDLKEKLKEVYDLERLAG 338 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 ++ G +D+ +R + IL L N L + +SL + L Sbjct: 339 KVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPC----ESLTELLGR 394 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + ++ P +DG ++DG + LD+ R + K IA L+ + + T +K+LKI +N Sbjct: 395 SIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGVKSLKIGYNR 454 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IEVT ++ + L + R+ +QT++N RF T EL + E I A + + Sbjct: 455 IFGYYIEVTKANLAAL-----PEGRYERKQTLANAERFITDELKEKETLILEAEEKIVQL 509 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + F L + L + ++VI+ +D+ + A +++E+ + +P++ N +KDG Sbjct: 510 EYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTNKREIFIKDG 569 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++RQ AL+ +M+ Sbjct: 570 RHPVVEKVL---NGKLYVPNDCIMPEKMD-----VFLITGPNMSGKSTYMRQLALVTVMS 621 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ +S ++ DE Sbjct: 622 QIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERSLILFDE 681 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGT+T DG+++A A IE++H+ + L +TH+HELT L +SL + N + + N Sbjct: 682 IGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLDQLKNVHVSAIEENG 741 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 ++FLHK+ G AD SYGI V +LA LP ++I+RA ++L E Sbjct: 742 KVVFLHKIQDGAADKSYGIHVAQLAELPESLIARAKEVLAQLE 784 >gi|332184621|gb|AEE26875.1| DNA mismatch repair protein MutS [Francisella cf. novicida 3523] Length = 845 Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust. Identities = 304/893 (34%), Positives = 472/893 (52%), Gaps = 65/893 (7%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +++ + TPM++QY++IKS D L+FYRMGDFYELFFDDA A+ L ITLT RGK G+ Sbjct: 2 QDISNHTPMIQQYLKIKSQYQDILLFYRMGDFYELFFDDAKKAAELLDITLTARGKSNGE 61 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H A YI K++K G IAICEQI P +K V R V R++TP T+ Sbjct: 62 SIPMAGVPYHAAETYIAKIVKKGLSIAICEQIGDP-----NTSKGPVERQVTRIITPATV 116 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKI-STSNHDRLISDIMRIDPREI 197 +E+ L + L+++ +++ +A+ + G I+ I S +N + L + ++++ P+EI Sbjct: 117 SEEAFLDSNQDSILVSIFVKNSKYNLAYTSYTQGKIYLIKSLTNPNELKNAVLKLSPQEI 176 Query: 198 IFSEKELSHAE------------YKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITT 245 I + EL+ Y S FE A N D +I+ + + + Y Sbjct: 177 ITNSHELAQQNPFKRPIKALEEWYYSNFE-----AKKYINDSLDSNIA-NNVLNLYKNDQ 230 Query: 246 VDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT 305 + T GS +SY+ I E Q TL ID +R NLE Sbjct: 231 LATIGSI-----------LSYLANILKDTPRHITDISHEQEQDTLNIDINSRINLE---- 275 Query: 306 LSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQ 365 L + + SLL I T G RL ++P D + TR IN +N + IQ Sbjct: 276 LDNNSKSSLLSIIGKCKTSLGSRLLKRYFSNPTRDLNILATRHSIINSLGENQHFLK-IQ 334 Query: 366 KILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLK 425 +L D+ R +SR+ +G +PKD+ +RD ++ + L L +E+ +++ Sbjct: 335 DVLSYISDIERIISRVALGTVKPKDLVALRDSLKQ-LPKLKKILSEKNTQEIENINKRIY 393 Query: 426 KLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE 485 +L + L L + D+ P RDGG ++DG D LDE +S++D S + + ++ Sbjct: 394 QLDE-LVTLLDKAIIDNPPATIRDGGVIKDGFDKELDELKSIKDNSYDFLIKFEELQKQK 452 Query: 486 TKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 T I LK+ +N GY+IE++ A + + ++ RQT+ R+ T EL + E+ Sbjct: 453 TGISTLKVGYNRVHGYYIELSKQHADKIPTE------YVRRQTLKASERYITEELKNFED 506 Query: 546 RITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPI 605 ++ ++ AL E ++ L +IE + + + IA ID+ A A + +P Sbjct: 507 KVLSSKEKALAREKLIYDTLLKKVIEYYKQIQETAASIAEIDVLANFAERAIKLKLSQPK 566 Query: 606 IDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKST 665 +N +K+ RH +E + + PFI ND LS K++ L ++TGPNMGGKST Sbjct: 567 FNNLAKLELKEVRHLAIEHNIDE----PFIPNDTLLS----KDTNTLQIITGPNMGGKST 618 Query: 666 FLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILN 725 ++RQ A ++ +A +GS+VPASYA I +D +++R+G++D+++SGRSTFMVEM ETA ILN Sbjct: 619 YMRQVAQLIFLAYIGSFVPASYADICDIDTIYTRIGASDDISSGRSTFMVEMTETAYILN 678 Query: 726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRF 785 A+ +S VI+DEIGRGT+T DGL++A A E + L ATH+ ELT+L+K Sbjct: 679 NASAKSLVIMDEIGRGTSTFDGLALAKACAEKFAQIG-AFTLFATHYFELTELAKQYPNV 737 Query: 786 HNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH 845 N + + + I F+HK + G A SYGIQV KLAG+ V+ A L EK Sbjct: 738 CNIHFEAKEYKDNIYFMHKAVTGAAKKSYGIQVAKLAGISQDVLKSAKQNLYNLEKKQQL 797 Query: 846 NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + E++ KN+L +KI ++++ ++PL AL L+ +K Sbjct: 798 TESTQVQAQLELEPTTQKNSLQ-------QKIDEIDINTITPLEALNILFELK 843 >gi|308173667|ref|YP_003920372.1| DNA mismatch repair recognition factor [Bacillus amyloliquefaciens DSM 7] gi|307606531|emb|CBI42902.1| DNA mismatch repair recognition factor [Bacillus amyloliquefaciens DSM 7] Length = 862 Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust. Identities = 287/903 (31%), Positives = 487/903 (53%), Gaps = 72/903 (7%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + S TPM++QY++IK+ D+ +F+R+GDFYE+FF+DA AS+ L ITLT R I Sbjct: 2 MASYTPMIQQYLKIKAEYQDAFLFFRLGDFYEMFFEDAKKASQELEITLTSRDGGSADKI 61 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H+A YI++LIK G+++AICEQ E P + K +V+R VV+L+TPGT+ + Sbjct: 62 PMCGVPYHSAAAYIEQLIKKGYKVAICEQTEDP-----KAAKGVVKREVVQLITPGTVMD 116 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGI-FKISTSNHDRLISDIMRIDPREIIFS 200 + + +++N++ +V+ + +A D++TG + + ++S+I + +EI+ S Sbjct: 117 GKGIHESENNFIASVSAFPGGYGLALSDLTTGENLAVFIERIEDVMSEIYSVGAKEIVVS 176 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITT-------VDTFGSFS 253 K + L E G SI + ++ D I +TF Sbjct: 177 SK-FNENTAAQLKERCGATI----------SIEDGKMTDRIEIAKHLPGEELTETFMRL- 224 Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQ 312 +Y++KTQ + + + +++ + ID ++ NLE+ T+ S S++ Sbjct: 225 ----------YTYLQKTQKRSLDHLQPVQVYELEEAMKIDLYSKRNLELTETIRSKSKKG 274 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 SLL +D + T GGRL + I PL +++I R + + I + +++ LK Sbjct: 275 SLLWLLDETKTAMGGRLLKQWIDRPLIRASQIEERQEMVETLINHLFEREDLRERLKEVY 334 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQS 430 D+ R R+ G +D+ +++ ++ +I L L + +E G ++ Sbjct: 335 DLERLAGRVAFGNVNARDLIQLKESLKQVPSIKELVGSLNHKKAKERAGLIDPCG----D 390 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L L L ++ P ++G ++DG LDE R K IA L+ + T I++ Sbjct: 391 LLDLLEDALHENPPLSLKEGNLIKDGYHQKLDEYRDASKNGKDWIARLEQQERAYTGIRS 450 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ N GY+IEVT ++ +L+ R+ +QT++N R+ T EL + E I A Sbjct: 451 LKVGFNKVFGYYIEVTKANLHLLEDG-----RYERKQTLTNAERYITPELKEKEALILEA 505 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII-DNS 609 N+ +E E F L + + L ++ ++ +D A +++ ++Y +P+ DN Sbjct: 506 ENNICELEYELFAGLREKVKQFIPRLQRLAKQMSELDALQCFATISENRHYTKPVFSDNE 565 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 I +GRHP+VEK + S+ ++ N+C + S ++ L+TGPNM GKST++RQ Sbjct: 566 VKVI--EGRHPVVEKVM---DSQEYVPNNCLMG-----ESREMLLITGPNMSGKSTYMRQ 615 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 AL+ IMAQ+G +VPA A + I D++F+R+G+AD+L SG+STFMVEM+E + + AT Sbjct: 616 IALLSIMAQIGCFVPAKEAVLPIFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIVNATK 675 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 S ++ DEIGRGT+T DG+++A A IEY+H+ + L +TH+HELT L L + N Sbjct: 676 DSLILFDEIGRGTSTYDGMALAQAIIEYVHDHIGAKTLFSTHYHELTVLEDKLPQLKNVH 735 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--------- 840 ++ + N ++FLH++ G AD SYGI V +LA LP+ +ISRA +ILK E Sbjct: 736 VRAEEYNGTVVFLHQIKEGAADKSYGIHVAQLAELPDDLISRAQEILKQLEQSGDKPELP 795 Query: 841 -----KLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 K + ++ + + ++ +S +K +E K +N+ +M+PL A+ +Y Sbjct: 796 AAPEKKPVVKEEPAQLSFFADGEKEQKAPAVSHKEKQVLEAFKSINILDMTPLEAMNEMY 855 Query: 896 AVK 898 ++ Sbjct: 856 KLQ 858 >gi|319763731|ref|YP_004127668.1| DNA mismatch repair protein muts [Alicycliphilus denitrificans BC] gi|317118292|gb|ADV00781.1| DNA mismatch repair protein MutS [Alicycliphilus denitrificans BC] Length = 870 Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust. Identities = 286/894 (31%), Positives = 463/894 (51%), Gaps = 48/894 (5%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L TPMM QY+ +K+ +PD+L+ YRMGDFYELF+ DA A+R L ITLT+RG+ G+ Sbjct: 5 DLTEHTPMMAQYLALKAQHPDTLLLYRMGDFYELFYADAEKAARLLDITLTQRGQSAGQP 64 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 + M GVP H +Y+ +LI++G +AI EQ+ + K V R VVR+VTPGTLT Sbjct: 65 VTMAGVPFHALENYLGRLIRLGESVAIAEQV-----GEVGAAKGPVERKVVRVVTPGTLT 119 Query: 141 EDQLLSPTDSNYLMAVAR-IRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 + +LL + L+AV + R +AW+ ++ G+ +++ L + + RI P E+I Sbjct: 120 DSELLPDKSESVLLAVHQGARARCGLAWLAVTQGVVQLAECTQAELGAWLARIAPSELIH 179 Query: 200 S-------EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSF 252 S E++L+ +F ++ +P+ FD ++ ++ ++ ++ + + Sbjct: 180 SAGITQRFEEQLAGLRQGGMFACPMSL---RPDWQFDAALGRRKLLEHLGAASLQAWNAE 236 Query: 253 S-QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 Q AAAA + Y + TQ + + + + A R NLE+++TL G Sbjct: 237 GLQDAHAAAAALLQYAEHTQGRALSHVHGVRVQQSDELIHLPLATRRNLELVKTLRGEDA 296 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI---L 368 +L +D +TG G RL + P D RL + P Q + L Sbjct: 297 PTLFSLLDTCMTGMGSRLLKTWLLEPRRDRGDARRRLAATQALRGTGGGQGPWQLLRGAL 356 Query: 369 KSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP 428 K DV R +R+ + + P+++ + ++ + + PE + + P Sbjct: 357 KGVSDVERITARIALRQVRPRELVALCSTLQKSELLAQ---SSQAPEAFLAQIFNDLQPP 413 Query: 429 QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 L + + ++ RDGG + G DA LDE R++++ + L+ + T I Sbjct: 414 AECTALLRAAILEEPAALVRDGGVIAPGFDAELDELRAIQNNCDGFLLDLETREKVRTGI 473 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 NL+++ N G++IEVTSS + D + RQT+ N RF T EL E++ Sbjct: 474 PNLRVQFNKVHGFYIEVTSSHVDKVPGD------YRRRQTLKNAERFITPELKSFEDKAL 527 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 +A L E +E + + + L +Q +A +D+ LA + ++C P Sbjct: 528 SAQERGLAREKWLYEQVLDQLQPHVPRLTRLAQALAALDVLCCLAERSLTLDWCAPQFVA 587 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 ++ GRHP+V+ L + SS FI N L+ + ++ ++TGPNMGGKST++R Sbjct: 588 EPCIDIEAGRHPVVQARLAETSSGAFIPNHTRLNA-----NTRMQIITGPNMGGKSTYMR 642 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q ALIV++A MGS+VPA+ +G +D + +R+G+AD+LA+ +STFM+EM E A IL+ AT Sbjct: 643 QVALIVLLASMGSHVPATACRLGPIDAIHTRIGAADDLANAQSTFMLEMTEAAQILHAAT 702 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA 788 S V++DEIGRGT+T DGL++A +LH+ + L ATH+ ELT+LS + N Sbjct: 703 PHSLVLMDEIGRGTSTFDGLALASGIATHLHDRTKAFTLFATHYFELTELSARHQHAVNV 762 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 + ++S I+FLH++ PG A SYGIQV KLAG+P V+ A L E+ + Sbjct: 763 HVGATESGHDIVFLHEIQPGPASRSYGIQVAKLAGVPAAVLHHARHTLAALEERAGEDDL 822 Query: 849 DMRLY----YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L+ PE+Q +S + + +N D +SP AL LY +K Sbjct: 823 QVDLFAPPPAPEVQA------VSPVEAALAQ----INPDALSPREALDALYQLK 866 >gi|254432191|ref|ZP_05045894.1| DNA mismatch repair protein MutS [Cyanobium sp. PCC 7001] gi|197626644|gb|EDY39203.1| DNA mismatch repair protein MutS [Cyanobium sp. PCC 7001] Length = 1006 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 275/831 (33%), Positives = 444/831 (53%), Gaps = 38/831 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TPM+R Y+E+K +P+ ++ YR+GDF+E FF+DA+ SR L +TLT + GK +G+ +PM Sbjct: 104 TPMLRHYVELKRAHPERVLLYRLGDFFECFFEDAIALSRLLELTLTGKEGGKAIGR-VPM 162 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G+P H A Y L++ G +A+C+Q+E+ L+RR++ R++TPGT+ E+ Sbjct: 163 AGIPHHAAERYCADLVRRGLSVALCDQLET-----TPAKGELLRRDITRVLTPGTVIEEG 217 Query: 144 LLSPTDSNYLMAVA----RIRTEWAIAWIDISTGIFKISTS-NHDRLISDIMRIDPREII 198 +L+ +N+L AV W +A D+STG F+++ D L ++++++ E++ Sbjct: 218 MLAARRNNWLCAVVLEPPGSGARWGLAVADVSTGEFRVTQQQGSDALHQELLQVEAAEVL 277 Query: 199 F-SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ-VE 256 + + ++ E + A F+ + + + + + ++ G Q + Sbjct: 278 WPAPGDIPAGETAPAWCPPALRLTALARTPFEKPEATATLQQRFQLASLAGLGLTEQPLA 337 Query: 257 KTAAAAAISYIKKTQM----VNKPTIGYPEREDIQSTLFIDSAARSNLEILRT-LSGSRE 311 AA ++Y+ TQ ++ PT +P L +D+A R NLE+ RT ++G E Sbjct: 338 LRAAGGLVAYLDSTQSGRVPLDPPTCWHP-----GDALVLDAATRRNLELTRTQMNGGFE 392 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 SLL +D + T GGR + +PL D I R ++ ++ L ++++L+ Sbjct: 393 GSLLWALDRTHTAMGGRCLRRWLEAPLLDRPAIEARQAAVGELVEGRTLRLNLRRLLRPM 452 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSL 431 D+ R R G +D+ + DG+ + L L L+ + +L ++L Sbjct: 453 GDLERLAGRAGAGTASARDLVALADGLER-LPQLAALLGPCSATPLQRLAQPWPEL-EAL 510 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 L +L D P +G + DG D LD R+ D +A + + I L Sbjct: 511 AAELRHVLLDTPPLSLTEGDLIHDGVDPLLDGLRNQLDDQDAWLAQQETSERAASGIATL 570 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 +++H+ GYF+ V+ + A+ + + +I RQT++N RF T L E I + Sbjct: 571 RLQHHRTFGYFLAVSKARAASVP------EHWIRRQTLANEERFVTPALRGREAEIQHLR 624 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 A E E F L EQ+ + A++++A +D +LA +A YCRP + + Sbjct: 625 ARAAQREYELFCQLRGRAGEQAARIRQAARLVAELDGLASLAEVAATCGYCRPTLTDGRE 684 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDC--DLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 ++ GRHP+VE L + F AN L +LTGPN GKS +LRQ Sbjct: 685 LEIEAGRHPVVELLLVDDA---FTANGLALGWDGDGPGGPPDLLILTGPNASGKSCYLRQ 741 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 L+ +MAQMGS++PA A +GI D++F+RVG+ D+LA+G+STFMVEM ETA+IL+ AT Sbjct: 742 TGLLQLMAQMGSWIPARSARLGIADRIFTRVGAGDDLAAGQSTFMVEMAETANILHHATA 801 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 +S V+LDEIGRGTAT DGLSIAWA E L + R + ATH+HEL +L++ L NA Sbjct: 802 RSLVLLDEIGRGTATFDGLSIAWAVAEELAQGIGARSIFATHYHELNELAELLPNVANAQ 861 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + V ++ + FLH+V+PG A SYGI+ +LAG+P +V+ RA +L E Sbjct: 862 VLVEETGSDLRFLHRVVPGGASRSYGIEAARLAGIPASVLLRARQVLSRIE 912 >gi|222153881|ref|YP_002563058.1| DNA mismatch repair protein MutS [Streptococcus uberis 0140J] gi|254766641|sp|B9DW73|MUTS_STRU0 RecName: Full=DNA mismatch repair protein mutS gi|222114694|emb|CAR43783.1| DNA mismatch repair protein MutS [Streptococcus uberis 0140J] Length = 847 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 280/879 (31%), Positives = 481/879 (54%), Gaps = 48/879 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK+ PD+ + +RMGDFYELF+DDA+ A++ L I LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKAQYPDAFLLFRMGDFYELFYDDAVKAAQLLEIGLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI++G+++AI EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPHHSAQQYIDILIELGYKVAIAEQMEDPKKAV-----GVVKREVVQVITPGTVV-DSAK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 + +N+L+A+ + + ++++D+ TG F + S+ + +I+ + +E++ E+ Sbjct: 121 PNSSNNFLIAIDFDGSHYGLSYMDLVTGEFFATTLSDFMSVCGEILNLKAKEVVIG-FEI 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 + + + L + + + ++ D ++ + SQVEK A + Sbjct: 180 TAEQEEQLQKQFRLLLSYEQEIYTDDTLINPNL---------------SQVEKNVAGKLL 224 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT 323 Y+ +TQM + DI+ L + A +S+L+++ ++ SL +D + T Sbjct: 225 QYVHQTQMRELSHLQELIHYDIKDYLQMSYATKSSLDLIENARTKKKHGSLYWLLDETKT 284 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL I PL I+ R + + F+++ I + + LK D+ R SR+ Sbjct: 285 AMGMRLLKTWIDRPLISKQAISERQNIVETFLESFIERSDLADSLKGVYDIERLSSRVSF 344 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 G+ PKD+ + + S + + L+ L + + +P+ LE + S + D Sbjct: 345 GKVNPKDLLQLGHTL-SQVPYIKAVLEAINSPHLSKVIATIDPIPE-LESLIHSAIDPDA 402 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P +G ++ G D LD R + + IA +++K + + I NLKI +N GY+ Sbjct: 403 PATISEGSIIKTGFDQRLDHYRKVMKEGTGWIADIEMKERQASGINNLKIDYNKKDGYYF 462 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 VT+S+ S++ D F + T+ N R+ T EL +E ++ A + +E + F Sbjct: 463 HVTNSNLSLVP------DHFFRKATLKNSERYGTAELAKIEGQMLEAREESAQLEYDIFM 516 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 + + + L ++ IA +D+ LA +A++ +Y RP + +++GRH +VE Sbjct: 517 RIREKVETYIDRLQTLAKAIATVDVLQGLAYVAEKNHYVRPEFASQKVITIQNGRHAVVE 576 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 K + Q +I N + + + L+TGPNM GKST++RQ AL VIMAQMGSYV Sbjct: 577 KVMGVQE---YIPNTIQFN-----QNTSIQLITGPNMSGKSTYMRQLALTVIMAQMGSYV 628 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 A YA + I D +F+R+G+AD+L SG+STFMVEM+E + +A++ S +I DE+GRGTA Sbjct: 629 AADYAKLPIFDAIFTRIGAADDLISGQSTFMVEMMEANQAIQRASHDSLIIFDELGRGTA 688 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DG+++A + IE++H L ATH+HELT LS+ L N + + + + + FLH Sbjct: 689 TYDGMALAQSIIEHIHNRIGAITLFATHYHELTSLSEELGHLKNVHVAILERDGEVTFLH 748 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESK 863 K+ G AD SYGI V K+AGLP +++SRA +ILK E + KD + Q++E++ Sbjct: 749 KIAEGPADKSYGIHVAKIAGLPGSLLSRADNILKQLES----HSKDFIIKDNSQQSEENE 804 Query: 864 --NNLSK--NDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 N L++ + + + ++K +++ M+P+ A+ L+ +K Sbjct: 805 PLNLLTEETSSQDIINRLKEVDVMNMTPMEAMTVLFDLK 843 >gi|326317902|ref|YP_004235574.1| DNA mismatch repair protein MutS [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374738|gb|ADX47007.1| DNA mismatch repair protein MutS [Acidovorax avenae subsp. avenae ATCC 19860] Length = 875 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 290/889 (32%), Positives = 467/889 (52%), Gaps = 38/889 (4%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 + + TPMM+QY+ +K+ PD+LVFYRMGDFYELF+ DA A+R L ITLT+RG+ G+ Sbjct: 8 DFSAHTPMMQQYLALKAGYPDTLVFYRMGDFYELFWADAEKAARLLDITLTQRGQSAGQP 67 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 + M GVP H +Y+ +LI++G +AICEQ+ + K V R VVR+VTPGTLT Sbjct: 68 VVMAGVPFHALENYLGRLIRMGESVAICEQV-----GEVGAAKGPVERKVVRVVTPGTLT 122 Query: 141 EDQLLSPTDSNYLMAVARI-RTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 + +LL L+AV + R +AW+ ++ G+ ++ HD + + I RI P E+++ Sbjct: 123 DSELLPDKAEAMLLAVHQAPRARCGLAWLSVTQGVVHLAECTHDEVGTWIARIGPSEVLY 182 Query: 200 SEKELSHAEYKSLFETLGNVAVA------QPNVFFDHSISESRIADYYNITTVDTFGSF- 252 S ++ + L V +P+ FD ++ ++ + +++ + + Sbjct: 183 SAGVTE--RFEQQLQALRQAGVLSCPLSLRPDWQFDGALGARKLLEQLGAASLNAWDAQD 240 Query: 253 SQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 A+AA +SY + TQ I + + + A R NLE+ RTL G Sbjct: 241 LAHAHAASAALLSYAEHTQGRALTHIHAVRVQKNDELIALPPATRRNLELTRTLRGEDAP 300 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI---LK 369 +L +D +TG G RL + P D T+ RL + + Q + L+ Sbjct: 301 TLFSLLDTCMTGMGSRLLKTWLLEPRRDRTEARARLAATAELRGDRGGAGSWQALRGALR 360 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 DV R +R+ + + P+++ + + I +D L + P Sbjct: 361 GVSDVERITARIALRQVRPRELVALCKTLHKAEQIAAEHRWHD---PLLAGIAGDLHAPP 417 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 + L+ + ++ RDGG + DG DA LDE R +++ + +L+ + T I Sbjct: 418 ACGALLAGAILEEPSALVRDGGVIADGFDAELDELRGIQNHCDDFLLALETREKARTLIP 477 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 NL+++ N G++IEVTSS + D + RQT+ N RF T EL E++ + Sbjct: 478 NLRVQFNKVHGFYIEVTSSYLDRIPDD------YRRRQTLKNAERFITPELKAFEDKALS 531 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 A AL E +E + + + E +L A+Q IA +D ALA + +C P Sbjct: 532 AQERALAREKWLYEQVLDQLQEHVPALTRAAQAIAALDALCALAERSLTLGWCAPQFATE 591 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 ++ GRHP+VE L + S+ FI N L+ + ++ ++TGPNMGGKST++RQ Sbjct: 592 PCIEIEGGRHPVVEARLAETSAGAFIPNHTRLNA-----NTRMQIITGPNMGGKSTYMRQ 646 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALIV++A MGS+VPA++ +G +D + +R+G+AD+LA+ +STFM+EM E A IL+ AT Sbjct: 647 VALIVLLASMGSHVPAAHCRLGPIDAIHTRIGAADDLANAQSTFMMEMTEAAQILHAATP 706 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 S V++DEIGRGT+T DGL++A +LH+ R L ATH+ ELT+L+ N Sbjct: 707 HSLVLMDEIGRGTSTFDGLALASGIATHLHDRTRAFTLFATHYFELTELATRHAHAVNVH 766 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 + ++S I+FLH++ PG A SYGI V +LAG+P V++ A L E+ + + Sbjct: 767 VGATESGSDIVFLHEIQPGPASRSYGIHVARLAGVPAPVLNHARHALSALEERANEGETQ 826 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L+ P +++ +S + ++ + D +SP AL LY +K Sbjct: 827 VDLFAPPPESEAP--GISPVEA----ALQNIQPDSLSPREALDALYQLK 869 >gi|229146341|ref|ZP_04274712.1| DNA mismatch repair protein mutS [Bacillus cereus BDRD-ST24] gi|228636974|gb|EEK93433.1| DNA mismatch repair protein mutS [Bacillus cereus BDRD-ST24] Length = 884 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 286/925 (30%), Positives = 502/925 (54%), Gaps = 101/925 (10%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R + IPMCGVP Sbjct: 1 MIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 61 YHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTIDE 115 Query: 148 TDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEKEL 204 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 116 KENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DSSF 174 Query: 205 SHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 S E L ETL A A P +H + N++ + ++ Sbjct: 175 SKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLIKAVGRL---- 221 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSLL 315 +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + SLL Sbjct: 222 ----FNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGSLL 274 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T GGR+ + + PL +I RL+ + F+ + L +++ LK D+ Sbjct: 275 WLLDKTKTAMGGRMLKQWMERPLIQKERIEERLEMVETFVNDYFLREDLKEKLKEVYDLE 334 Query: 376 RSLSRLKIGRGEPKDIAVIRD------GIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 R ++ G +D+ +R I I++L+ + L ++GA + Sbjct: 335 RLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYASRL---IQGA-----DPCE 386 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 SL + L + ++ P +DG ++DG + LD+ R + K IA L+ + + T IK Sbjct: 387 SLTELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGIK 446 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 +LKI +N GY+IEVT ++ + L + R+ +QT++N RF T EL + E I Sbjct: 447 SLKIGYNRIFGYYIEVTKANLAAL-----PEGRYERKQTLANAERFITDELKEKETLILE 501 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 A + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 502 AEEKIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTK 561 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++RQ Sbjct: 562 REIFIKDGRHPVVEKVL---NGKLYVPNDCIMPEKMD-----VFLITGPNMSGKSTYMRQ 613 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 AL+ +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ Sbjct: 614 LALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASE 673 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 +S ++ DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L +SL + N Sbjct: 674 RSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLDQLKNVH 733 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--------- 840 + + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 734 VSAIEENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLEGQEEIIIPK 793 Query: 841 --------------------------KLYHHNQKDMRLYYPEIQT-KESKNNLSKNDKLF 873 K+ + + + E + K+ K+ L + + Sbjct: 794 RVEVKVQEAAPEPVVVKEEIAEIQETKVETEEESQLSFFGGEQSSKKQDKSLLDQKETAV 853 Query: 874 VEKIKCLNLDEMSPLTALKTLYAVK 898 + +IK ++L +M+PL A+ LY ++ Sbjct: 854 LAQIKKIDLLDMTPLEAMNELYRLQ 878 >gi|293606639|ref|ZP_06688994.1| DNA mismatch repair protein MutS [Achromobacter piechaudii ATCC 43553] gi|292814923|gb|EFF74049.1| DNA mismatch repair protein MutS [Achromobacter piechaudii ATCC 43553] Length = 866 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 296/903 (32%), Positives = 469/903 (51%), Gaps = 73/903 (8%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY+ +K+ L+FYRMGDFYE+F++DA +R L +TLTKRG G IPM G+P Sbjct: 1 MMQQYLRLKAEAGPLLLFYRMGDFYEMFYEDAERGARLLNLTLTKRGSSNGTPIPMAGLP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 VH Y+ +L+ +G IAICEQI P +K V R +VR+VTPGTLT+D LL Sbjct: 61 VHAMEQYLARLVAMGESIAICEQIGDPA-----ASKGPVERRIVRIVTPGTLTDDALLPA 115 Query: 148 TDSNYLMAV---ARIRTEWA-IAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 L AV R A +AW+++++G F+++ +L S++ RI P EI+ ++ Sbjct: 116 KADRALAAVFVSGNARAPRAGLAWLNLASGEFRVTECAPAQLESELHRISPAEIVCADS- 174 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 A + F+ + P+ F+ + + + ++ T+ F AA A Sbjct: 175 ---AAFDFPFDGARSRV---PDWHFESDGARAHLLAHFKTDTLAGFDIEDMPAGICAAGA 228 Query: 264 I-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 + Y +TQ + E + +D R NLE+ +TLSG +L +D Sbjct: 229 LLRYAARTQSQALTHVQSLSAERPGQYVLLDPVTRRNLELTQTLSGEDSPTLFSLLDGCR 288 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPI----------LINPIQKILKSSP 372 T G RL + PL ++ + R +I+ + + ++ ++ L + P Sbjct: 289 TPMGSRLLRRWLHHPLRENEQALARQQAISALLAGRMDVEQTFGSAGVLEALRAALNAFP 348 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ--- 429 D+ R +RL + P+++A +RD +++ LP LR VE + P+ Sbjct: 349 DIERIAARLALRSVRPRELASLRDALQA------------LPA-LRDLVEPMAASPRLGD 395 Query: 430 -----SLEKTLSSML----SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 S++ L+++L + + RDGG L G DA LDE R L + L+ Sbjct: 396 LISHLSVDPALAALLVRAIAPEPAVAIRDGGVLAAGFDAELDELRGLAADGGDFLLQLEA 455 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 + E T I NL+++ N G++IEVT + + +D + RQT+ N R+ T EL Sbjct: 456 RERERTGISNLRVEFNRVHGFYIEVTKGQTAKVPED------YRRRQTLKNAERYITPEL 509 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 E+++ +A + +L E FE L + + E L + + +A +D ALA A+ + Sbjct: 510 KTWEDKVLSAQDRSLAREKWLFEQLLDVLAEHVRPLSDCAAALAELDALSALAEHARRHD 569 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 + P + + + + GRHP+VE +++ F N C L + ++ L+TGPNM Sbjct: 570 WIAPELSENADIDIDAGRHPVVEHAIER-----FTPNGCRLD-----PARRMLLITGPNM 619 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GGKST++RQ ALIV++A++GS+VPA+ A IG +D++F+R+G+AD+LA GRSTFM+EM E Sbjct: 620 GGKSTYMRQVALIVLLARIGSFVPAARARIGKIDRIFTRIGAADDLAGGRSTFMMEMTEA 679 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 A+IL+ +T S V++DEIGRGT+T DGL++AWA L NR L ATH+ ELT L Sbjct: 680 AAILSASTPNSLVLMDEIGRGTSTYDGLALAWAIACRLLAHNRALTLFATHYFELTRLPA 739 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 N L ++S GI+FLH+V G A SYGIQV + AG+P VI +A L+ E Sbjct: 740 EQPASANVHLAAAESAAGIVFLHEVREGPASRSYGIQVAQRAGVPAAVIRQATRELERLE 799 Query: 841 KLYHHNQKDMRLYYPEIQTKESKNNLSKNDKL-----FVEKIKCLNLDEMSPLTALKTLY 895 + ++ ++D + E++ ++ D ++P AL LY Sbjct: 800 AQGAPTPQLGLFSAAADADAQAYAQADRHDAIEALDALREELATIDPDSLTPREALDALY 859 Query: 896 AVK 898 +K Sbjct: 860 RLK 862 >gi|301632438|ref|XP_002945292.1| PREDICTED: DNA mismatch repair protein mutS-like [Xenopus (Silurana) tropicalis] Length = 881 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 292/907 (32%), Positives = 469/907 (51%), Gaps = 46/907 (5%) Query: 7 SPQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCL 66 SP+K SE DL N++S TPMM+QY+++K+ P +L+ YRMGDFYE+F+ DA ASR L Sbjct: 2 SPEKPASE--DLLRNIESHTPMMQQYLQLKAQYPHTLLLYRMGDFYEVFWQDAEKASRLL 59 Query: 67 GITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLV 126 ITLT+RG+ G+ + M GVP H Y+ +LIK+G +AI EQ+ AK V Sbjct: 60 DITLTQRGQSAGQPVLMAGVPFHALESYLGRLIKMGESVAIAEQVGDVATAK-----GPV 114 Query: 127 RRNVVRLVTPGTLTEDQLLSPTDSNYLMAVAR-IRTEWAIAWIDISTGIFKISTSNHDRL 185 R VVR+VTPGTLT+ +LLS + L+AV + R +AW+ ++ G ++ + L Sbjct: 115 ERKVVRVVTPGTLTDSELLSDKSESLLLAVHQGKRARCGLAWLSVTQGRVFLAECTLENL 174 Query: 186 ISDIMRIDPREIIFSEKELSHAEYK-SLFETLGNVAVA---QPNVFFDHSISESRIADYY 241 + RI P E+++S E + L G A +P+ FD ++ E ++ + Sbjct: 175 GGWLARIAPSELLYSGGVSQRFEQQLQLLRQSGACACPIAPRPDWQFDSALGERKLLEAT 234 Query: 242 NITTVDTFGSFSQVEKTAAAAAISYI-KKTQMVNKPTIGYPEREDIQSTLFIDSAARSNL 300 T+ +G+ + AAAAA+ + + TQ I + + + + ++ R NL Sbjct: 235 GAATLQAWGAQDLAQAHAAAAALLHYAEHTQGRQLTHIHSIQAQHGSELIDLPASTRRNL 294 Query: 301 EILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL 360 E+++TL G +L +D +TG G RL + P + + + RL + N Sbjct: 295 ELVKTLRGEDGPTLFSLLDTCMTGMGSRLLKTWLLEPRRERVQASARLAATQALRGNAAS 354 Query: 361 INP-----IQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE 415 P +++ LK D R +R+ + + P+++ + ++ + PE Sbjct: 355 PGPAPWSWLREQLKGVSDAERITARIALRQVRPRELVALAQTLQKAELLAQ---SGQAPE 411 Query: 416 ELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRII 475 + K + P + L + ++ RDGG + G DA LDE R+++ + Sbjct: 412 PYLTQILKQLQPPPACAALLQHAICEEPAALVRDGGVIASGFDAELDELRAIQGNCDAFL 471 Query: 476 ASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRF 535 L+ + T I NL+++ N G++IEVT S + D + RQT+ N RF Sbjct: 472 LELETREKARTGIPNLRVQFNKVHGFYIEVTVSHLDKVPPD------YRRRQTLKNAERF 525 Query: 536 TTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAIL 595 T EL E++ +A AL E +E L + Q +L + + +A +D+ A Sbjct: 526 ITPELKAFEDKALSAQERALAREKWLYEQLLEQLQPQVPALTHLAHALAALDVLCTFAER 585 Query: 596 AKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLL 655 + +C P ++ GRHP+VE L + SS FIAN L ++ ++ Sbjct: 586 SLTLGWCTPQFVPEPCIEIEAGRHPVVEARLAETSSGAFIANHTRLHAHQ-----RMQII 640 Query: 656 TGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMV 715 TGPNMGGKST++RQ ALIV++A +GS+VPA +G +D + +R+G+AD+L + +STFM+ Sbjct: 641 TGPNMGGKSTYMRQVALIVLLASIGSHVPAGSCRLGPIDAIHTRIGAADDLVNAQSTFML 700 Query: 716 EMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHEL 775 EM+E A IL+ AT S V++DEIGRGT+T DGL++A +LH+ R L ATH+ EL Sbjct: 701 EMVEAAQILHAATPHSLVLMDEIGRGTSTFDGLALASGIATHLHDKTRAFTLFATHYFEL 760 Query: 776 TDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI 835 T+L + + N + +++ I+FLH++ G A SYG+QV KLAG+P V+ A Sbjct: 761 TELPATARHAVNMHVSAAENGADIVFLHELQAGPASRSYGLQVAKLAGMPAAVLHHARHA 820 Query: 836 LKTFEKLYHHNQKDMRLY----YPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTAL 891 L E+ + + + L+ PE+ + + +N D++SP AL Sbjct: 821 LAALEERAAEDARQVDLFAAPPLPEMVVGSAVET----------ALAQINPDQLSPREAL 870 Query: 892 KTLYAVK 898 LY +K Sbjct: 871 DALYQLK 877 >gi|227524330|ref|ZP_03954379.1| DNA mismatch repair protein MutS [Lactobacillus hilgardii ATCC 8290] gi|227088561|gb|EEI23873.1| DNA mismatch repair protein MutS [Lactobacillus hilgardii ATCC 8290] Length = 863 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 282/824 (34%), Positives = 452/824 (54%), Gaps = 50/824 (6%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY +IK PD+ +FYR+GDFYELF DDA+ S+ L +TLT R ++ +PMCGVP Sbjct: 1 MMVQYQKIKDQYPDAFLFYRLGDFYELFNDDAIKGSQLLELTLTNRSRNAENPVPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 A +YI L+ G+++AICEQ+E P R K +V+R V++LVTPGT + + Sbjct: 61 HKAAQNYIDILVDQGYKVAICEQMEDP-----RLTKGMVKRAVIQLVTPGTQVDVGSQNA 115 Query: 148 TDSNYLMAVA--RIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204 +NYL AV + + ++ D+STG K++ LI++++ + +E + + Sbjct: 116 KSNNYLTAVTYDQDNRAFGFSYADLSTGELKVAKLDTQAELINELVSLQTKETVVGSRFP 175 Query: 205 SHAEYKSLFET---LGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 K++ ET LG + Q + + S+S Y VD + K Sbjct: 176 -----KTILETIQKLGILISHQEALPINASVS-------YLSQDVD-----KEPLKQVVK 218 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSLLKT 317 + YI+ TQ K ++ + +R + L +D ++ NLE+ R + +G + +LL Sbjct: 219 MLLDYIQTTQ---KRSLQHLKRAVVYEPSDFLELDHNSQYNLELTRNIRTGKKGGTLLWL 275 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D + T GGR + I PL + +KI+ R D++ + + + +Q L D+ R Sbjct: 276 LDQTKTAMGGRKLKQWIERPLVNKSKISERQDAVGVLLDHYYERSQLQDELIKVYDLERL 335 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 R+ G +D+ ++ ++ + + L+ + ++ L L +++ S Sbjct: 336 AGRIAFGSVNGRDLIQLKTSLQQ-VPKIKYILEQIADNSFKDMLKDLIPLDDIVDEISRS 394 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 ++ + P DGG ++DG D LD+ R + ++ +A L+ K + T I NLK+ N+ Sbjct: 395 II-EQPPISVTDGGVIKDGFDDQLDKYRDASNNGQKWLAELEAKERQVTGINNLKVGFNH 453 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IEVT + + + ++R+ +QT++N RF+T EL + E I A + + Sbjct: 454 VFGYYIEVTKVNLNKM-----PENRYQRKQTLANAERFSTPELKEKEALILEAQEQSKTL 508 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + F + + I + + + + +A ID+ + A +++E + RP + N V DG Sbjct: 509 EYKLFVRIRDDIKKSIKRIQALADAVASIDVLQSFANVSEEYRFIRPTLTNDHRVKVIDG 568 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VEK L Q ++ N+ D+ + L+TGPNM GKST++RQ AL VIM Sbjct: 569 RHPVVEKVLGHQQ---YVPNNVDMG-----EDTSVLLITGPNMSGKSTYMRQMALCVIMN 620 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 QMG +VPA A + + DK+F+R+G+AD+L SG+STFMVEM E + AT S ++ DE Sbjct: 621 QMGCFVPAKKATLPVFDKIFTRIGAADDLISGQSTFMVEMKEANDAIENATPNSLILFDE 680 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGTAT DG+++A A IEY+H + L +TH+HELT L +SLK+ N + ++SN Sbjct: 681 IGRGTATYDGMALAQAIIEYVHNNIGAKTLFSTHYHELTSLDESLKQLQNVHVGATESNG 740 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 ++FLHK+ PG AD SYGI V KLAGLPN ++ RA IL EK Sbjct: 741 ELVFLHKIQPGPADKSYGIHVAKLAGLPNGLLKRANHILTDLEK 784 >gi|255021391|ref|ZP_05293439.1| DNA mismatch repair protein MutS [Acidithiobacillus caldus ATCC 51756] gi|254969254|gb|EET26768.1| DNA mismatch repair protein MutS [Acidithiobacillus caldus ATCC 51756] Length = 853 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 300/894 (33%), Positives = 465/894 (52%), Gaps = 74/894 (8%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 + TP+MRQ+ ++K+ +PD+L+F+RMGDFYELF++DA A+ LGI LT RG+ G +PM Sbjct: 11 AHTPVMRQFHDLKAQHPDALLFFRMGDFYELFYEDAQRAAAILGIALTSRGQSAGAPVPM 70 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRG-NKSLVRRNVVRLVTPGTLTED 142 GVPVH+ ++Y+ +LI+ G R+AI EQ+ P G +K V R + R++TPGTL + Sbjct: 71 AGVPVHSVDNYLARLIQAGERVAIAEQVGDP------GLSKGPVEREIRRVITPGTLVDA 124 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK 202 LLS L+A+ + W +A +D++ G I DRL+ ++R EI+ E Sbjct: 125 SLLSADREALLLALLPEKDRWGLATLDVAGGRLGIRDVRADRLLEVLVRRPVAEILAPEG 184 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVF----FDHSISESRIADYYNITTVDTFGSFSQVEKT 258 SL L ++ P F+ ++ + Y++ G + Sbjct: 185 -------CSLPRDLPR-SLPSPTFLKAERFERRQTQPILQRYFSQPGQIVDGERHPIGLQ 236 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE--QSLLK 316 AAA + Y + + E+ + L +D + S LE+L G RE SL + Sbjct: 237 AAAVLLDYAENRLKSPLHQVRQILPENDEEELGLDGESLSALEVL----GGREGGPSLYQ 292 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 + + T G RL ++A PL ++ R ++ I + +Q+ L+ PD R Sbjct: 293 ILQHCRTAMGARLLRAQLARPLRPGPILDRRHRALAALIAQRGHLR-LQEQLRHLPDAER 351 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----QSLE 432 ++R+ +G P+D+ +R +++ + L L L G +L + P + Sbjct: 352 IVTRVALGSASPRDLGQLRQFLQT-LPTLQTALATAL-----GGESELGEFPWPDLSAQC 405 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 + L L +DLP RDGG++R G +A LD R L + ++++ L+ E + I L+ Sbjct: 406 RLLEQALEEDLPATLRDGGYIRTGFNADLDHHRQLSENLQQVLVELEQSERERSGIPQLR 465 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 +++N G FIE+ S L D + RQ+ + RF+ L +LE + A + Sbjct: 466 LQYNRVQGLFIEIPRSYTGPLPAD------YQRRQSTRHAERFSNPRLKELETQSLAAES 519 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 A +E F + + E+ L Q +A D+ LA A + P ++ Sbjct: 520 RAKTLERACFGDILRQLAERIGELQWLCQRVAQWDVCANLAERALALRWSAPSFCDAPVL 579 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 + +GRHP+VE L F+ ND +D++ +L LLTGPNMGGKST++RQ A+ Sbjct: 580 EIDEGRHPVVEMQL----GAGFVPNDLRF---DDEH--RLLLLTGPNMGGKSTYMRQTAI 630 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 IV++A +GS+VPA A +G +D++F+R+G++D+LA GRSTF+VEM ETA ILN AT+ S Sbjct: 631 IVLLAHIGSWVPARRARLGPIDRIFTRIGASDDLAGGRSTFLVEMQETARILNLATDHSL 690 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 V+LDEIGRGT+T DGL+IAWA +E L E R L ATH+ ELT+L HNA L Sbjct: 691 VLLDEIGRGTSTYDGLAIAWACLESLAE-KRAYTLFATHYFELTEL--QYPGVHNAHLTA 747 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 ++ I+FLH+V PG A S+GI V +LAGLP TV+ A L E Sbjct: 748 MTRDKDIVFLHRVEPGPATQSFGIAVARLAGLPETVLENARRHLAELED----------- 796 Query: 853 YYPEIQTKESKNNLSKNDKLFVE-------KIKCLNLDEMSPLTALKTLYAVKA 899 P + + N LF E +++ L+ D +SP AL+ LY ++A Sbjct: 797 --PARPSPAADANAKSQLSLFAESPHPALQRLRDLDPDALSPRAALELLYQLQA 848 >gi|227510187|ref|ZP_03940236.1| DNA mismatch repair protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190392|gb|EEI70459.1| DNA mismatch repair protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 862 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 282/824 (34%), Positives = 452/824 (54%), Gaps = 50/824 (6%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY +IK PD+ +FYR+GDFYELF DDA+ S+ L +TLT R ++ +PMCGVP Sbjct: 1 MMVQYQKIKDQYPDAFLFYRLGDFYELFNDDAIKGSQLLELTLTNRSRNAENPVPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 A +YI L+ G+++AICEQ+E P R K +V+R V++LVTPGT + + Sbjct: 61 HKAAQNYIDILVDQGYKVAICEQMEDP-----RLTKGMVKRAVIQLVTPGTQVDVGSQNA 115 Query: 148 TDSNYLMAVARIRTE--WAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204 +NYL AV + + ++ D+STG K++ LI++++ + +E + + Sbjct: 116 KSNNYLTAVTYDQDNRVFGFSYADLSTGELKVAKLDTQAELINELVSLQTKETVVGSRFP 175 Query: 205 SHAEYKSLFET---LGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 K++ ET LG + Q + + S+S Y VD + K Sbjct: 176 -----KTILETIQKLGILISHQEALPINASVS-------YLSQDVD-----KEPLKQVVK 218 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSLLKT 317 + YI+ TQ K ++ + +R + L +D ++ NLE+ R + +G + +LL Sbjct: 219 MLLDYIQTTQ---KRSLQHLKRAVVYEPSDFLELDHNSQYNLELTRNIRTGKKGGTLLWL 275 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D + T GGR + I PL + +KI+ R D++ + + + +Q L D+ R Sbjct: 276 LDQTKTAMGGRKLKQWIERPLVNKSKISERQDAVGVLLDHYYERSQLQDELIKVYDLERL 335 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 R+ G +D+ ++ ++ + + L+ + ++ L L +++ S Sbjct: 336 AGRIAFGSVNGRDLIQLKTSLQQ-VPKIKYILEQIADNSFKDMLKDLIPLDDIVDEISRS 394 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 ++ + P DGG ++DG D LD+ R + ++ +A L+ K + T I NLK+ N+ Sbjct: 395 II-EQPPISVTDGGVIKDGFDDQLDKYRDASNNGQKWLAELEAKERQVTGINNLKVGFNH 453 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IEVT + + + ++R+ +QT++N RF+T EL + E I A + + Sbjct: 454 VFGYYIEVTKVNLNKI-----PENRYQRKQTLANAERFSTPELKEKEALILEAQEQSKTL 508 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + F + + I + + + + +A ID+ + A +++E + RP + N V DG Sbjct: 509 EYKLFVRIRDDIKKSIKRIQALADAVASIDVLQSFANVSEEYRFIRPTLTNDHRVKVIDG 568 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VEK L Q ++ N+ D+ + L+TGPNM GKST++RQ AL VIM Sbjct: 569 RHPVVEKVLGHQQ---YVPNNVDMG-----EDTSVLLITGPNMSGKSTYMRQMALCVIMN 620 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 QMG +VPA A + + DK+F+R+G+AD+L SG+STFMVEM E + AT S ++ DE Sbjct: 621 QMGCFVPAKKATLPVFDKIFTRIGAADDLISGQSTFMVEMKEANDAIENATPNSLILFDE 680 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGTAT DG+++A A IEY+H + L +TH+HELT L +SLK+ N + ++SN Sbjct: 681 IGRGTATYDGMALAQAIIEYVHNNIGAKTLFSTHYHELTSLDESLKQLQNVHVGATESNG 740 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 ++FLHK+ PG AD SYGI V KLAGLPN ++ RA IL EK Sbjct: 741 ELVFLHKIQPGPADKSYGIHVAKLAGLPNGLLKRANHILTDLEK 784 >gi|228959976|ref|ZP_04121641.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar pakistani str. T13001] gi|229111242|ref|ZP_04240796.1| DNA mismatch repair protein mutS [Bacillus cereus Rock1-15] gi|229129046|ref|ZP_04258019.1| DNA mismatch repair protein mutS [Bacillus cereus BDRD-Cer4] gi|228654283|gb|EEL10148.1| DNA mismatch repair protein mutS [Bacillus cereus BDRD-Cer4] gi|228672236|gb|EEL27526.1| DNA mismatch repair protein mutS [Bacillus cereus Rock1-15] gi|228799719|gb|EEM46671.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar pakistani str. T13001] Length = 884 Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust. Identities = 272/831 (32%), Positives = 470/831 (56%), Gaps = 65/831 (7%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R + IPMCGVP Sbjct: 1 MIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 61 YHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTIDE 115 Query: 148 TDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEKEL 204 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 116 KENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DSSF 174 Query: 205 SHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 S E L ETL A A P +H + N++ + ++ Sbjct: 175 SKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLIKAVGRL---- 221 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSLL 315 +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + SLL Sbjct: 222 ----FNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGSLL 274 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T GGR+ + + PL +I RL+ + F+ + L +++ LK D+ Sbjct: 275 WLLDKTKTAMGGRMLKQWMERPLIQKERIEERLEMVETFVNDYFLREDLKEKLKEVYDLE 334 Query: 376 RSLSRLKIGRGEPKDIAVIRD------GIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 R ++ G +D+ +R I I++L+ + L ++GA + Sbjct: 335 RLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYASRL---IQGA-----DPCE 386 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 SL + L + ++ P +DG ++DG + LD+ R + K IA L+ + + T IK Sbjct: 387 SLTELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGIK 446 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 +LKI +N GY+IEVT ++ + L + R+ +QT++N RF T EL + E I Sbjct: 447 SLKIGYNRIFGYYIEVTKANLAAL-----PEGRYERKQTLANAERFITDELKEKETLILE 501 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 A + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 502 AEEKIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTK 561 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++RQ Sbjct: 562 REIFIKDGRHPVVEKVL---NGKLYVPNDCIMPEKMD-----VFLITGPNMSGKSTYMRQ 613 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 AL+ +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ Sbjct: 614 LALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASE 673 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 +S ++ DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L +SL + N Sbjct: 674 RSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLDQLKNVH 733 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 734 VSAIEENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 784 >gi|227513115|ref|ZP_03943164.1| DNA mismatch repair protein [Lactobacillus buchneri ATCC 11577] gi|227083690|gb|EEI19002.1| DNA mismatch repair protein [Lactobacillus buchneri ATCC 11577] Length = 862 Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust. Identities = 282/824 (34%), Positives = 452/824 (54%), Gaps = 50/824 (6%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY +IK PD+ +FYR+GDFYELF DDA+ S+ L +TLT R ++ +PMCGVP Sbjct: 1 MMVQYQKIKDQYPDAFLFYRLGDFYELFNDDAIKGSQLLELTLTNRSRNAENPVPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 A +YI L+ G+++AICEQ+E P R K +V+R V++LVTPGT + + Sbjct: 61 HKAAQNYIDILVDQGYKVAICEQMEDP-----RLTKGMVKRAVIQLVTPGTQVDVGSQNA 115 Query: 148 TDSNYLMAVARIRTE--WAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204 +NYL AV + + ++ D+STG K++ LI++++ + +E + + Sbjct: 116 KSNNYLTAVTYDQDNRVFGFSYADLSTGELKVAKLDTQAELINELVSLQTKETVVGSRFP 175 Query: 205 SHAEYKSLFET---LGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 K++ ET LG + Q + + S+S Y VD + K Sbjct: 176 -----KTILETIQKLGILISHQEALPINASVS-------YLSQDVD-----KEPLKQVVK 218 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSLLKT 317 + YI+ TQ K ++ + +R + L +D ++ NLE+ R + +G + +LL Sbjct: 219 MLLDYIQTTQ---KRSLQHLKRAVVYEPSDFLELDHNSQYNLELTRNIRTGKKGGTLLWL 275 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D + T GGR + I PL + +KI+ R D++ + + + +Q L D+ R Sbjct: 276 LDQTKTAMGGRKLKQWIERPLVNKSKISERQDAVGVLLDHYYERSQLQDELIKVYDLERL 335 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 R+ G +D+ ++ ++ + + L+ + ++ L L +++ S Sbjct: 336 AGRIAFGSVNGRDLIQLKTSLQQ-VPKIKYILEQIADNSFKDMLKDLIPLDDIVDEISRS 394 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 ++ + P DGG ++DG D LD+ R + ++ +A L+ K + T I NLK+ N+ Sbjct: 395 II-EQPPISVTDGGVIKDGFDDQLDKYRDASNNGQKWLAELEAKERQVTGINNLKVGFNH 453 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IEVT + + + ++R+ +QT++N RF+T EL + E I A + + Sbjct: 454 VFGYYIEVTKVNLNKI-----PENRYQRKQTLANAERFSTPELKEKEALILEAQEQSKTL 508 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + F + + I + + + + +A ID+ + A +++E + RP + N V DG Sbjct: 509 EYKLFVRIRDDIKKSIKRIQALADAVASIDVLQSFANVSEEYRFIRPTLTNDHRVKVIDG 568 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VEK L Q ++ N+ D+ + L+TGPNM GKST++RQ AL VIM Sbjct: 569 RHPVVEKVLGHQQ---YVPNNVDMG-----EDTSVLLITGPNMSGKSTYMRQMALCVIMN 620 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 QMG +VPA A + + DK+F+R+G+AD+L SG+STFMVEM E + AT S ++ DE Sbjct: 621 QMGCFVPAKKATLPVFDKIFTRIGAADDLISGQSTFMVEMKEANDAIENATPNSLILFDE 680 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGTAT DG+++A A IEY+H + L +TH+HELT L +SLK+ N + ++SN Sbjct: 681 IGRGTATYDGMALAQAIIEYVHNNIGAKTLFSTHYHELTSLDESLKQLQNVHVGATESNG 740 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 ++FLHK+ PG AD SYGI V KLAGLPN ++ RA IL EK Sbjct: 741 ELVFLHKIQPGPADKSYGIHVAKLAGLPNGLLKRANHILTDLEK 784 >gi|229168509|ref|ZP_04296232.1| DNA mismatch repair protein mutS [Bacillus cereus AH621] gi|228614915|gb|EEK72017.1| DNA mismatch repair protein mutS [Bacillus cereus AH621] Length = 884 Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust. Identities = 273/830 (32%), Positives = 465/830 (56%), Gaps = 63/830 (7%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R IPMCGVP Sbjct: 1 MIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 61 HHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTIDE 115 Query: 148 TDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEKEL 204 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 116 KENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DSTF 174 Query: 205 SHAEYKSLFETLGNV-----AVAQPNVFFDH---SISESRIADYYNITTVDTFGSFSQVE 256 S E L ETL A A P +H S+S++++ Sbjct: 175 SKDELNKLTETLKMTISYEDATAIPE-GLEHLVKSVSQAKLI------------------ 215 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQ 312 A +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + Sbjct: 216 -KAIGRLFNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTG 271 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 SLL +D + T GGR+ + + PL K+ RL+ + F+ + L +++ LK Sbjct: 272 SLLWLLDKTKTAMGGRMLKQWMERPLIQKEKVEERLEMVETFVNDYFLREDLKEKLKEVY 331 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQS 430 D+ R ++ G +D+ +R + IL L N L + +S Sbjct: 332 DLERLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPC----ES 387 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L + L + ++ P +DG ++DG + LD+ R + K IA L+ + + T +K+ Sbjct: 388 LTELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGVKS 447 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LKI +N GY+IEVT ++ + L + R+ +QT++N RF T EL + E I A Sbjct: 448 LKIGYNRIFGYYIEVTKANLAAL-----PEGRYERKQTLANAERFITDELKEKETLILEA 502 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ N Sbjct: 503 EEKIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTNKR 562 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++RQ Sbjct: 563 EIFIKDGRHPVVEKVL---NGKLYVPNDCIMPEKMD-----VFLITGPNMSGKSTYMRQL 614 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 AL+ +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ + Sbjct: 615 ALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASER 674 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S ++ DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L +SL + N + Sbjct: 675 SLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLDQLKNVHV 734 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N ++FLHK+ G AD SYGI V +LA LP ++I+RA ++L E Sbjct: 735 SAIEENGKVVFLHKIQDGAADKSYGIHVAQLAELPESLIARAKEVLAQLE 784 >gi|241667914|ref|ZP_04755492.1| DNA mismatch repair protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876454|ref|ZP_05249164.1| DNA mismatch repair protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842475|gb|EET20889.1| DNA mismatch repair protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 846 Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust. Identities = 300/887 (33%), Positives = 471/887 (53%), Gaps = 52/887 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 + + + TPM++QY++IKS PD L+FYRMGDFYELFFDDA A+ L ITLT RGK G Sbjct: 2 QEVSNHTPMIQQYLKIKSQYPDILLFYRMGDFYELFFDDAKNAAELLDITLTARGKSNGD 61 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H A YI K++K G +AICEQI P +K V R V R++TP T+ Sbjct: 62 SIPMAGVPYHAAEGYIAKIVKKGLSVAICEQIGDP-----STSKGPVERQVTRIITPATV 116 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKIST-SNHDRLISDIMRIDPREI 197 +E+ L + L+++ ++ IA+ + G I I+T +N L + I+++ P+EI Sbjct: 117 SEEAFLDSNQDSILVSIYEKNNKYHIAYTSYTQGKIHLINTVTNSSDLKNQILKLSPQEI 176 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 I + L K++F V V + F + + + + N + + + + Sbjct: 177 ITNSNSLIE---KNIFNK--PVKVLEEWYFSNFEAKKHILNSFDNSFANNILNLYKKEQL 231 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 T + ++Y+ T I ++ Q+ L ID +R+NLE L + + SLL Sbjct: 232 TVIGSILAYLTNTLKSTPKHISDILLDEDQNILNIDINSRNNLE----LDNNSKSSLLNI 287 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D T G RL +P D KI+ R + I F Q+ + IQ IL D+ R Sbjct: 288 MDKCKTSLGSRLLRRYFKNPTRDLNKISLRHNVIKSFKQHHYFLK-IQDILSYINDIERI 346 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEKLKKLPQSLEKTL 435 +SR+ +G +PKD+ + + + +L + + E + + ++ +L K L Sbjct: 347 ISRVALGTVKPKDLVSLNSSLEQLPKLKSLLEEINTSEIININNHIHQIDELT----KLL 402 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + + D+ P RDGG ++ G D LDE R L+D S + + ++T I LK+ + Sbjct: 403 NKAIVDNPPMTIRDGGVIKHGFDQELDELRGLKDNSYDFLLKFETLQKQKTGINTLKVGY 462 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+IE++ A + + +I RQT+ R+ T EL E++I +A AL Sbjct: 463 NRVHGYYIELSKQYADKVPTE------YIRRQTLKASERYITDELKAFEDKILSAKEKAL 516 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 E ++ L N ++E + + IA ID+ A A + N +P + + +K Sbjct: 517 AREKLIYDTLLNKVLEYYSQIQQTAASIAKIDVLANFAERAIKLNLNQPKFNKTGKLDIK 576 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 + RH +E+ + + PFI ND LS ++ L ++TGPNMGGKST++RQ A ++ Sbjct: 577 EARHLAIEQNIDE----PFIPNDTLLST----DTYTLEIITGPNMGGKSTYMRQVAQLIF 628 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +A +GS+VPASYA IG +D +++R+G++D+++SGRSTFMVEM ETA ILN AT +S VI+ Sbjct: 629 LAYIGSFVPASYADIGDIDTIYTRIGASDDISSGRSTFMVEMTETAYILNNATKKSLVIM 688 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+A A E + L ATH+ ELT+L N + + Sbjct: 689 DEIGRGTSTFDGLSLAKACAEKFAKIG-ALTLFATHYFELTELVNQYPNTKNIHFEAKEY 747 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE----KLYHHNQKDMR 851 + I F+HK + G A SYGIQV KLAG+ V+ A L E KL +Q Sbjct: 748 KDNIYFMHKAVAGAAKKSYGIQVAKLAGISKDVLESAKKNLANLEKGQDKLDTIDQPQQN 807 Query: 852 LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 L ++ KN++ E+++ ++++ ++P+ AL L+ +K Sbjct: 808 L---QLDQTPQKNHIK-------ERLETIDINSITPIEALNILFELK 844 >gi|94991407|ref|YP_599507.1| DNA mismatch repair protein MutS [Streptococcus pyogenes MGAS10270] gi|166232144|sp|Q1JEH0|MUTS_STRPD RecName: Full=DNA mismatch repair protein mutS gi|94544915|gb|ABF34963.1| DNA mismatch repair protein mutS [Streptococcus pyogenes MGAS10270] Length = 851 Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust. Identities = 282/882 (31%), Positives = 479/882 (54%), Gaps = 49/882 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKNYPDAFLLFRMGDFYELFYEDAVKAAQLLEIGLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI++G+++A+ EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPHHSAQQYIDVLIELGYKVAVAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSAK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204 + +N+L+AV + +A++D+STG F ++ ++ + S+I + +E++ +L Sbjct: 121 PDSANNFLVAVDFDGCRYGLAYMDVSTGEFCVTDLADFTSVRSEIQNLKAKEVLLG-FDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E L + + + + V+ D S+ + G + VE TAA + Sbjct: 180 SEEEQTILVKQMNLLLSYEETVYEDKSLID---------------GQLTTVELTAAGKLL 224 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT 323 Y+ KTQM + +I+ L + A +S+L+++ +++ SL +D + T Sbjct: 225 QYVHKTQMRELSHLQALVHYEIKDYLQMSYATKSSLDLVENARTNKKHGSLYWLLDETKT 284 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL I PL I R + I F+ I + LK D+ R SR+ Sbjct: 285 AMGMRLLRSWIDRPLVSKEAILERQEIIQVFLNAFIERTDLSNSLKGVYDIERLSSRVSF 344 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 G+ PKD+ + + I + D P + V + LP+ LE + + + D Sbjct: 345 GKANPKDLLQLGHTLAQVPYIKAILESFDSPC-VDKLVNDIDSLPE-LEYLIRTAIDPDA 402 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P +G +R+G D LD R + + IA ++ K +E+ I NLKI +N GY+ Sbjct: 403 PATISEGSIIRNGFDERLDHYRKVMREGTGWIADIEAKERQESGINNLKIDYNKKDGYYF 462 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 VT+S+ S++ + F + T+ N R+ T EL +E ++ A + +E + F Sbjct: 463 HVTNSNLSLVP------EHFFRKATLKNSERYGTAELAKIEGQMLEAREESSSLEYDIFM 516 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 + + L ++ +A +D+ +LA++A+ +Y RP +++ +++GRH +VE Sbjct: 517 CIRAQVETYINRLQKLAKTLATVDVLQSLAVVAETNHYIRPQFNDNHVITIQEGRHAVVE 576 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 K + Q +I N S D+ + + L+TGPNM GKST++RQ AL VIMAQMGS+V Sbjct: 577 KVMGVQE---YIPN----SISFDQQTS-IQLITGPNMSGKSTYMRQLALTVIMAQMGSFV 628 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 A + + + D +F+R+G+AD+L SG+STFMVEM+E + +A++ S ++ DE+GRGTA Sbjct: 629 AADHVDLPLFDAIFTRIGAADDLISGQSTFMVEMMEANQAIKRASDNSLILFDELGRGTA 688 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DG+++A A IEY+H+ + + ATH+HELTDLS L N + + + + FLH Sbjct: 689 TYDGMALAQAIIEYIHDRVGAKTIFATHYHELTDLSTKLTSLVNVHVATLEKDGDVTFLH 748 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT---- 859 K+ G AD SYGI V K+AGLP +++ RA ++L E ++ P++++ Sbjct: 749 KIAEGPADKSYGIHVAKIAGLPKSLLKRADEVLTRLET--QSRSTEIMSVPPQVESSSAV 806 Query: 860 KESKNNLSKNDKLFVE---KIKCLNLDEMSPLTALKTLYAVK 898 ++ + +L +D+ E ++ +++ M+P A+ TLY +K Sbjct: 807 RQGQLSLFGDDEKAHEIRQALEAIDVMNMTPFQAMTTLYELK 848 >gi|229081021|ref|ZP_04213534.1| DNA mismatch repair protein mutS [Bacillus cereus Rock4-2] gi|228702335|gb|EEL54808.1| DNA mismatch repair protein mutS [Bacillus cereus Rock4-2] Length = 884 Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust. Identities = 272/831 (32%), Positives = 470/831 (56%), Gaps = 65/831 (7%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R + IPMCGVP Sbjct: 1 MIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 61 YHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTIDE 115 Query: 148 TDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEKEL 204 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 116 KENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DSSF 174 Query: 205 SHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 S E L ETL A A P +H + N++ + ++ Sbjct: 175 SKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLIKAVGRL---- 221 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSLL 315 +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + SLL Sbjct: 222 ----FNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGSLL 274 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T GGR+ + + PL +I RL+ + F+ + L +++ LK D+ Sbjct: 275 WLLDKTKTAMGGRMLKQWMERPLIQKERIEERLEMVETFVNDYFLREDLKEKLKEVYDLE 334 Query: 376 RSLSRLKIGRGEPKDIAVIRD------GIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 R ++ G +D+ +R I I++L+ + L ++GA + Sbjct: 335 RLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYASRL---IQGA-----DPCE 386 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 SL + L + ++ P +DG ++DG + LD+ R + K IA L+ + + T IK Sbjct: 387 SLTELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGIK 446 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 +LKI +N GY+IEVT ++ + L + R+ +QT++N RF T EL + E I Sbjct: 447 SLKIGYNRIFGYYIEVTKANLAAL-----PEGRYERKQTLANAERFITDELKEKETLILE 501 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 A + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 502 AEEKIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTK 561 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++RQ Sbjct: 562 REIFIKDGRHPVVEKVL---NGKLYVPNDCIMPENMD-----VFLITGPNMSGKSTYMRQ 613 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 AL+ +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ Sbjct: 614 LALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASE 673 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 +S ++ DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L +SL + N Sbjct: 674 RSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLDQLKNVH 733 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 734 VSAIEENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 784 >gi|119953574|ref|YP_945784.1| DNA mismatch repair protein MutS [Borrelia turicatae 91E135] gi|254766616|sp|A1R0M2|MUTS_BORT9 RecName: Full=DNA mismatch repair protein mutS gi|119862345|gb|AAX18113.1| DNA mismatch repair protein MutS [Borrelia turicatae 91E135] Length = 860 Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust. Identities = 291/852 (34%), Positives = 468/852 (54%), Gaps = 68/852 (7%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TPMMRQY+ IK + D+++F+R+G FYE+FFDDAL S+ LG+TLTKR +++P Sbjct: 3 KDVTPMMRQYLNIKDKHKDAILFFRVGSFYEMFFDDALEGSKLLGLTLTKR-----ENVP 57 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP HT+ YI+KLI + ++AICEQ L+ +G + R VV +++PG + ++ Sbjct: 58 MCGVPCHTSKDYIKKLILLDKKVAICEQ---GLQTDPKGP---LEREVVEVISPGVVIDE 111 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDIST---GIFKISTSNHDRLISDIMRIDPREIIF 199 L +NYL+A++ + ++ ++ID+ST GI + ++L DI + P+EII Sbjct: 112 DFLQDDINNYLIAISDYKDYYSFSYIDLSTSRLGIILYEGNFLEKLRRDIEKYSPKEIIV 171 Query: 200 SEKELSHAEYKSLFETLGNVAVAQ------PNVFFDHSISESRIADYYNITTVDTFGSFS 253 SE +E L +A+ + P+ FD I+ + +++N+ ++ G F Sbjct: 172 SED--------FYYEYLEKLALDRFLVNKIPHWHFDKEIAMKSLKEHFNVLSLSALG-FK 222 Query: 254 QVEKTAAAA--AISYIK---KTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG 308 + E ++ I YIK K ++N TI + +F+D + NLE+++ + Sbjct: 223 EDEPYYVSSFLIIDYIKNNLKNLLINIDTIHINNDSE---YMFLDDVTQINLELVKNNND 279 Query: 309 -SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI 367 + SL ++ T G RL E I +PL D IN RLD + F N L ++ I Sbjct: 280 LTSCYSLYSVLNDCKTPMGKRLLREYILNPLLDIVAINNRLDHVEFLNNNINLSMKLRDI 339 Query: 368 LKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL 427 L + D+ R +SRL++ + KD +I++ + + FL L E + Sbjct: 340 LSNVWDIERIISRLQMKKYVKKDFLLIKESLTA------FFLAKRLLNEHSFSYWIFDVN 393 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 ++ + + S++ D K ++ G + +D R +++ + + + +K Sbjct: 394 DENNIREIYSLI--DCSISKEPDELIQHGYNFEIDRLREIKNNASKYVDDYLNFERNFSK 451 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 I +LKI+ N G F EVT S + FI QT++++ R+ T +LI+LE I Sbjct: 452 ISSLKIRRINVRGLFFEVTKSYYG------QVPSHFIESQTLNSVKRYKTNKLIELERDI 505 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 +A ++ L +E E F+ +++ I++ S + + A +D+ A LAK+ Y RP + Sbjct: 506 NDAEDNLLALEQEVFDDIASKIVKHSVVIKKIANFFAYVDVVSDFAYLAKKNEYVRPTLT 565 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 N+ I++ RHP+VE +K + F N + NDK L+TGPNM GKST+L Sbjct: 566 NNKEIILECSRHPVVEHYMK--GVEAFTKNSVKID--NDK---YFCLITGPNMAGKSTYL 618 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ AL+V+M +GS+VPA+ A IGI DK+F R+G++DN++ G STF+VEM ETA+IL A Sbjct: 619 RQTALVVLMGHIGSFVPANQAIIGITDKIFCRIGASDNISKGESTFLVEMNETANILRNA 678 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 T S +I+DE+GRGT+T DGL+IA++ +EY+ E + R L ATHFHEL+ + F N Sbjct: 679 TQNSLIIMDEVGRGTSTNDGLAIAYSIVEYILEHIQARSLFATHFHELSAIKHD--SFVN 736 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ 847 ++++ + +IFL +V + +SYGI V ++AG+P VI RA ILK+ H Sbjct: 737 LSMKIERQGDELIFLREVEEKPSLNSYGIYVARIAGIPLKVIERANVILKSLTSREH--- 793 Query: 848 KDMRLYYPEIQT 859 LY PE T Sbjct: 794 ----LYVPEFFT 801 >gi|227432074|ref|ZP_03914087.1| DNA mismatch repair protein MutS [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352156|gb|EEJ42369.1| DNA mismatch repair protein MutS [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 854 Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust. Identities = 306/890 (34%), Positives = 479/890 (53%), Gaps = 67/890 (7%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 + TPMM QY EIKS PD+ VFYR+GDFYELF DDA+L ++ L +TLT R K+ +PM Sbjct: 5 AETPMMVQYHEIKSQYPDAFVFYRLGDFYELFEDDAVLGAKLLELTLTARNKNSENPVPM 64 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G+P H A +YI L+ GH++AI EQ+E P AK +V+R+VV+L+TPGT Sbjct: 65 AGIPHHAAQNYIDILVDQGHKVAIVEQMEDPATAK-----GMVKRDVVQLITPGTKLNSG 119 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIF-SE 201 + + +NYL AV + +++ID+STG K +T +I ++ ++ +EI+ + Sbjct: 120 MGNDKQNNYLAAVLPRDNRYFLSYIDLSTGELKTTTLKRFSDVIDELSSLEVKEIVLLKD 179 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 E + + G V Q +V N+ +F + V + A Sbjct: 180 DETTELGIANKLAERGLVISTQSDV---------------NVNATVSFLTQPLVHENEAQ 224 Query: 262 AA---ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKT 317 ++YI TQ N I + + + L + R+NL++++ + + SLL Sbjct: 225 VTTILLNYIFDTQRRNLDHIIPAQNYERLAYLKFNQDTRTNLDLVKNARTKKKAGSLLGL 284 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILI-NPIQKILKSSPDVPR 376 ID + T GGRL + + PL D+ IN RLD I F QN + +Q LKS D+ R Sbjct: 285 IDETKTAMGGRLLKQWLLRPLRDTEDINERLDVIEAF-QNEFFVRGALQDHLKSVYDLER 343 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 +R +G +++ ++ + S I + L + L A ++L+ + L + Sbjct: 344 LAARAAMGTMNARELVQLKRSL-SAIPGMKSVLSSS-QGILNHASQRLEDM-SDLAGLID 400 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + DD P R+G + DG D+ +DE R++ Q+++ +A L+ T I +LK+K+N Sbjct: 401 EAIVDDPPISIREGDIINDGFDSKIDEYRNVLSQNQKWLAQLESDERAATGINSLKVKYN 460 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 N G+FIEV+ ++ S L++ R+ +QT++N RF T EL + E I A Sbjct: 461 KNFGFFIEVSRANVSKLEEG-----RYERKQTLTNAERFVTPELKEHERLINEAQLKRTE 515 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 E E F + L ++ +A +D+ +LA ++ + RP + +K Sbjct: 516 REYELFITIRERFKANISRLQKLARQVAQLDVLASLADVSDNNRFVRPTFTDDNIINIKQ 575 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE L+ + F+AND +L D+N+ + L+TGPNM GKST++R+ ALIVI+ Sbjct: 576 GRHPVVEAILE---AGEFVANDVNL----DQNTA-MQLITGPNMAGKSTYMRELALIVIL 627 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 QMGS+VPA A + I D++F+R+G+ D++A G+STFMVEM E L +A+ S ++ D Sbjct: 628 GQMGSFVPAESAVLPIFDQIFTRIGANDDMAMGQSTFMVEMAEANLALQEASAHSLILFD 687 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELT---DLSKSLKRFHNATLQVS 793 E+GRGTAT DG+++A A IEYL + L +TH+HELT D +++K H V Sbjct: 688 ELGRGTATYDGMALAQAIIEYLDAHVHAKTLFSTHYHELTALVDKHENIKNVHVGA--VE 745 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 D + + FLH++ G AD SYGI V LAGLP+ +I+ A IL E NQ+ + Sbjct: 746 DESGELHFLHQIQQGPADKSYGIHVAALAGLPDELIANATTILSGLE-----NQEAL--- 797 Query: 854 YPE-----IQTKESKNNLS----KNDKLFVEKIKCLNLDEMSPLTALKTL 894 PE + + + N+S K + LF +K+ +N+ M+PL AL L Sbjct: 798 VPEPKASGLSEQAALFNVSDVDPKTETLF-QKLDSINISTMTPLEALNVL 846 >gi|223983836|ref|ZP_03634001.1| hypothetical protein HOLDEFILI_01282 [Holdemania filiformis DSM 12042] gi|223964199|gb|EEF68546.1| hypothetical protein HOLDEFILI_01282 [Holdemania filiformis DSM 12042] Length = 843 Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust. Identities = 280/822 (34%), Positives = 457/822 (55%), Gaps = 41/822 (4%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 ++ TPMM+QY+E+K D+LVFYR+GDFYE+FF+DA +AS L + LT R + + Sbjct: 1 MEQYTPMMQQYLEVKKNYQDALVFYRLGDFYEMFFEDAKIASCELDLVLTGRNAGVKDRV 60 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PMCGVP H YIQ+L++ G+++AI EQ+E P AK LV+R+V+++VTPGT+ Sbjct: 61 PMCGVPFHAVTGYIQRLVQKGYKVAIVEQMEDPALAK-----GLVKRDVIKVVTPGTVI- 114 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIF 199 D+L S YL AV + +A++ ++STG ++ N L +++ + REI+ Sbjct: 115 DELFDERSSIYLAAVVDYQYGFALSICEMSTGETTVTHIPRNILHLQQTLLKNNIREIVV 174 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 KE ++ L VA++ + I E +Y + + G+ ++ A Sbjct: 175 --KEGFDEKFIRGVRDLSAVAISYCAI---DQIGE----EYLPLCEEVSDGA----QREA 221 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTI 318 ++Y+ +TQ + E E+ L++D + + NLE++ L + S+ ++L + Sbjct: 222 YGLMLNYLIETQKRMMHHLQTVEIENENDVLYMDFSTQQNLELVVPLRTQSKSETLWSFL 281 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D + G RL + I PL D KI R D I + ++N ++ ++ L D+ R + Sbjct: 282 DRCQSAMGSRLLKKWIERPLVDKKKILFRQDRIEYLMKNYLVREDLKDKLNQIYDMERLI 341 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 +R+ G D ++ + IL LF + +E R L SL + L Sbjct: 342 ARVAYGSANAIDCQRLQKTLSQVPEILALFQDAPVFQEYRDIDCCL-----SLTELLDGA 396 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 ++ P ++GG +G LDE RS + + K I + E T IK LKI +N Sbjct: 397 FVENPPVSVKEGGMFAEGFSEQLDEYRSAQKEGKTWILQQENYERERTGIKTLKIGYNRV 456 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IEV+ +A+ +K++ ++ +QT++N R+ T EL + E+ I +A ++ +E Sbjct: 457 FGYYIEVSKGAAAQVKEEY----GYVRKQTLTNAERYITSELKEKEDAILHAEERSIRLE 512 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 E F L I L + ++A +D+ AL+ ++ + Y RP+ +++GR Sbjct: 513 TELFANLLEQIRSYLPKLQKLALMLANMDVYYALSSISADNGYVRPLF-TEDELKIEEGR 571 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HPI+EK S+ +++N S DK + ++ ++TGPNMGGKST++RQ ALI++MAQ Sbjct: 572 HPILEKI----STNRYVSN----SLAMDKEN-QILIITGPNMGGKSTYMRQVALIILMAQ 622 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +G +VPA + I DK+F+R+G++D++ SG+STFMVEM E + L+QAT S ++ DEI Sbjct: 623 IGCFVPAKKCEMPIFDKIFTRIGASDDILSGQSTFMVEMTEANNALSQATEHSLILFDEI 682 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DG+++A A IEY+ + L +TH+HELT L +SL N ++V + N Sbjct: 683 GRGTSTYDGMALAQAMIEYIAVCIHAKTLFSTHYHELTSLDESLPVVKNVHVEVHEDNGH 742 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + F+++V G AD SYGI V +LA LP V+ RA D+L +E Sbjct: 743 VTFMYRVKKGKADRSYGINVARLAQLPEAVLERAGDLLAEYE 784 >gi|50915171|ref|YP_061143.1| DNA mismatch repair protein MutS [Streptococcus pyogenes MGAS10394] gi|139474579|ref|YP_001129295.1| DNA mismatch repair protein MutS [Streptococcus pyogenes str. Manfredo] gi|68052493|sp|Q5X9F3|MUTS_STRP6 RecName: Full=DNA mismatch repair protein mutS gi|166232146|sp|A2RGX2|MUTS_STRPG RecName: Full=DNA mismatch repair protein mutS gi|50904245|gb|AAT87960.1| MutS [Streptococcus pyogenes MGAS10394] gi|134272826|emb|CAM31104.1| DNA mismatch repair protein MutS [Streptococcus pyogenes str. Manfredo] Length = 851 Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust. Identities = 282/882 (31%), Positives = 476/882 (53%), Gaps = 49/882 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L I LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYPDAFLLFRMGDFYELFYDDAVKAAQLLEIGLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI++G+++A+ EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPHHSAQQYIDVLIELGYKVAVAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSAK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204 + +N+L+AV + +A++D+STG F ++ ++ + S+I + +E++ +L Sbjct: 121 PDSANNFLVAVDFDGCRYGLAYMDVSTGEFCVTDLADFTSVRSEIQNLKAKEVLLG-FDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E L + + + + V+ D S+ + G + VE TAA + Sbjct: 180 SEEEQTILVKQMNLLLSYEETVYEDKSLID---------------GQLTTVELTAAGKLL 224 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT 323 Y+ KTQM + +I+ L + A +S+L+++ +++ SL +D + T Sbjct: 225 QYVHKTQMRELSHLQALVHYEIKDYLQMSYATKSSLDLVENARTNKKHGSLYWLLDETKT 284 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL I PL I R + I F+ I + LK D+ R SR+ Sbjct: 285 AMGMRLLRSWIDRPLVSKEAILERQEIIQVFLNAFIERTDLSNSLKGVYDIERLSSRVSF 344 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 G+ PKD+ + + I + D P + V + LP+ LE + + + D Sbjct: 345 GKANPKDLLQLGHTLAQVPYIKAILESFDSPC-VDKLVNDIDSLPE-LEYLIRTAIDPDA 402 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P +G +R G D LD R + + IA ++ K + + I NLKI +N GY+ Sbjct: 403 PATISEGSIIRTGFDERLDHYRKVMREGTGWIADIEAKERQASGINNLKIDYNKKDGYYF 462 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 VT+S+ S++ + F + T+ N R+ T EL +E ++ A + +E + F Sbjct: 463 HVTTSNLSLVP------EHFFRKATLKNSERYGTAELAKIEGQMLEAREESSSLEYDIFM 516 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 + + L ++++A +D+ +LA++A+ +Y RP +++ +++GRH +VE Sbjct: 517 CIRAQVETYINRLQKLAKILATVDVLQSLAVVAETNHYIRPQFNDNHVITIQEGRHAVVE 576 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 K + Q +I N S D+ + + L+TGPNM GKST++RQ AL VIMAQMGS+V Sbjct: 577 KVMGVQE---YIPN----SISFDQQTS-IQLITGPNMSGKSTYMRQLALTVIMAQMGSFV 628 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 A + + + D +F+R+G+AD+L SG+STFMVEM+E + +A++ S ++ DE+GRGTA Sbjct: 629 AADHVDLPLFDAIFTRIGAADDLISGQSTFMVEMMEANQAIKRASDNSLILFDELGRGTA 688 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DG+++A A IEY+H+ + + ATH+HELTDLS L N + + + + FLH Sbjct: 689 TYDGMALAQAIIEYIHDRVGAKTIFATHYHELTDLSTKLTSLVNVHVATLEKDGDVTFLH 748 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKES- 862 K+ G AD SYGI V K+AGLP +++ RA ++L E ++ P++++ + Sbjct: 749 KIAEGPADKSYGIHVAKIAGLPKSLLKRADEVLTRLET--QSRSTEIMSVPPQVESSSAV 806 Query: 863 -KNNLS-----KNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + LS + + ++ +++ M+PL A+ TLY +K Sbjct: 807 RQGQLSLFGDEEKAHEIRQALEAIDVMNMTPLQAMTTLYELK 848 >gi|229191894|ref|ZP_04318864.1| DNA mismatch repair protein mutS [Bacillus cereus ATCC 10876] gi|228591445|gb|EEK49294.1| DNA mismatch repair protein mutS [Bacillus cereus ATCC 10876] Length = 884 Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust. Identities = 272/831 (32%), Positives = 472/831 (56%), Gaps = 65/831 (7%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R + IPMCGVP Sbjct: 1 MIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 61 YHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTIDE 115 Query: 148 TDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEKEL 204 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 116 KENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DSSF 174 Query: 205 SHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 S E L ETL A A P +H + N++ + ++ Sbjct: 175 SKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLIKAVGRL---- 221 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSLL 315 +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + SLL Sbjct: 222 ----FNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGSLL 274 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T GGR+ + + PL +I RL+ + F+ + L +++ LK D+ Sbjct: 275 WLLDKTKTAMGGRMLKQWMERPLIQKERIEERLEMVETFVNDYFLREDLKEKLKEVYDLE 334 Query: 376 RSLSRLKIGRGEPKDIAVIRD------GIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 R ++ G +D+ +R I I++L+ + L ++GA + Sbjct: 335 RLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYASRL---IQGA-----DPCE 386 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 SL + L + ++ P +DG ++DG + LD+ R + K IA L+ + + T IK Sbjct: 387 SLTELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGIK 446 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 +LKI +N GY+IEVT ++ + L + R+ +QT++N RF T EL + E I Sbjct: 447 SLKIGYNRIFGYYIEVTKANLAAL-----PEGRYERKQTLANAERFITDELKEKETLILE 501 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 A + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 502 AEEKIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTK 561 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 +KDGRHP+VEK L + K ++ NDC + P + + ++L+TGPNM GKST++RQ Sbjct: 562 REIFIKDGRHPVVEKVL---NGKLYVPNDCIM--PENMD---VFLITGPNMSGKSTYMRQ 613 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 AL+ +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ Sbjct: 614 LALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASE 673 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 +S ++ DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L +SL + N Sbjct: 674 RSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLDQLKNVH 733 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 734 VSAIEENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 784 >gi|228922484|ref|ZP_04085786.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837198|gb|EEM82537.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 884 Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust. Identities = 272/831 (32%), Positives = 472/831 (56%), Gaps = 65/831 (7%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R + IPMCGVP Sbjct: 1 MIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 61 YHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTIDE 115 Query: 148 TDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEKEL 204 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 116 KENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DSSF 174 Query: 205 SHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 S E L ETL A A P +H + N++ + ++ Sbjct: 175 SKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLIKAVGRL---- 221 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSLL 315 +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + SLL Sbjct: 222 ----FNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGSLL 274 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T GGR+ + + PL +I RL+ + F+ + L +++ LK D+ Sbjct: 275 WLLDKTKTAMGGRMLKQWMERPLIQKERIEERLEMVETFVNDYFLREDLKEKLKEVYDLE 334 Query: 376 RSLSRLKIGRGEPKDIAVIRD------GIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 R ++ G +D+ +R I I++L+ + L ++GA + Sbjct: 335 RLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYASRL---IQGA-----DPCE 386 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 SL + L + ++ P +DG ++DG + LD+ R + K IA L+ + + T IK Sbjct: 387 SLTELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGIK 446 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 +LKI +N GY+IEVT ++ + L + R+ +QT++N RF T EL + E I Sbjct: 447 SLKIGYNRIFGYYIEVTKANLAAL-----PEGRYERKQTLANAERFITDELKEKETLILE 501 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 A + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 502 AEEKIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTK 561 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 +KDGRHP+VEK L + K ++ NDC + P + + ++L+TGPNM GKST++RQ Sbjct: 562 REIFIKDGRHPVVEKVL---NGKLYVPNDCIM--PENMD---VFLITGPNMSGKSTYMRQ 613 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 AL+ +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ Sbjct: 614 LALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASE 673 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 +S ++ DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L +SL + N Sbjct: 674 RSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLDQLKNVH 733 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 734 VSAIEENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 784 >gi|21911342|ref|NP_665610.1| DNA mismatch repair protein MutS [Streptococcus pyogenes MGAS315] gi|28896716|ref|NP_803066.1| DNA mismatch repair protein MutS [Streptococcus pyogenes SSI-1] gi|25453108|sp|Q8K5J5|MUTS_STRP3 RecName: Full=DNA mismatch repair protein mutS gi|21905557|gb|AAM80413.1| putative DNA mismatch repair protein [Streptococcus pyogenes MGAS315] gi|28811970|dbj|BAC64899.1| putative DNA mismatch repair protein [Streptococcus pyogenes SSI-1] Length = 851 Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust. Identities = 287/891 (32%), Positives = 473/891 (53%), Gaps = 67/891 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYPDAFLLFRMGDFYELFYEDAVKAAQLLEIGLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI++G+++A+ EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPHHSAQQYIDVLIELGYKVAVAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSAK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204 + +N+L+AV + +A++D+STG F ++ ++ + S+I + +E++ +L Sbjct: 121 PDSANNFLVAVDFDGCRYGLAYMDVSTGEFCVTDLADFTSVRSEIQNLKAKEVLLG-FDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E L + + + + V+ D S+ + G + VE TAA + Sbjct: 180 SEEEQTILVKQMNLLLSYEETVYEDKSLID---------------GQLTTVELTAAGKLL 224 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT 323 Y+ KTQM + +I+ L + A +S+L+++ +++ SL +D + T Sbjct: 225 QYVHKTQMRELSHLQALVHYEIKDYLQMSYATKSSLDLVENARTNKKHGSLYWLLDETKT 284 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL I PL I R + I F+ I + LK D+ R SR+ Sbjct: 285 AMGMRLLRSWIDRPLVSKEAILERQEIIQVFLNAFIERTDLSNSLKGVYDIERLSSRVSF 344 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 G+ PKD+ + + I + D P + V + LP+ LE + + + D Sbjct: 345 GKANPKDLLQLGHTLAQVPYIKAILESFDSPC-VDKLVNDIDSLPE-LEYLIRTAIDPDA 402 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P +G +R+G D LD R + + IA ++ K + + I NLKI +N GY+ Sbjct: 403 PATISEGSIIRNGFDERLDHYRKVMREGTGWIADIEAKERQASGINNLKIDYNKKDGYYF 462 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 VT+S+ S++ + F + T+ N R+ T EL +E ++ A + +E + F Sbjct: 463 HVTNSNLSLVP------EHFFRKATLKNSERYGTAELAKIEGQMLEAREESSSLEYDIFM 516 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 + + L ++++A +D+ +LA++A+ +Y RP +++ +++GRH +VE Sbjct: 517 CIRAQVETYINRLQKLAKILATVDVLQSLAVVAETNHYIRPQFNDNHVITIQEGRHAVVE 576 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 K + Q +I N S D+ + + L+TGPNM GKST++RQ AL VIMAQMGS+V Sbjct: 577 KVMGVQE---YIPN----SISFDQQTS-IQLITGPNMSGKSTYMRQLALTVIMAQMGSFV 628 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 A + + + D +F+R+G+AD+L SG+STFMVEM+E + +A++ S ++ DE+GRGTA Sbjct: 629 AADHVDLPLFDAIFTRIGAADDLISGQSTFMVEMMEANQAIKRASDNSLILFDELGRGTA 688 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DG+++A A IEY+H+ + + ATH+HELTDLS L N + + + + FLH Sbjct: 689 TYDGMALAQAIIEYIHDRVGAKTIFATHYHELTDLSTKLTSLVNVHVATLEKDGDVTFLH 748 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN----------------Q 847 K+ G AD SYGI V K+AGLP +++ RA ++L E Q Sbjct: 749 KIAEGPADKSYGIHVAKIAGLPKSLLKRADEVLTRLETQSRSTEIISVPSQVESSSAVRQ 808 Query: 848 KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L+ E +T E + L E I +N M+PL A+ TLY +K Sbjct: 809 GQLSLFGDEEKTHEIRQAL--------EAIDVMN---MTPLQAMTTLYELK 848 >gi|251783479|ref|YP_002997784.1| DNA mismatch repair protein MutS [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242392111|dbj|BAH82570.1| DNA mismatch repair protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 851 Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust. Identities = 282/880 (32%), Positives = 474/880 (53%), Gaps = 45/880 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L I LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYPDAFLLFRMGDFYELFYDDAVKAAQLLEIGLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI++G+++A+ EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPHHSAQQYIDVLIELGYKVAVAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSAK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204 + +N+L+AV + +A++D+STG F ++ ++ + S+I + +E++ +L Sbjct: 121 PDSANNFLVAVDFDGCRYGLAYMDVSTGEFCVTDLADFTSVRSEIQNLKAKEVLLG-FDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E L + + + + V+ D S+ + G + VE TAA + Sbjct: 180 SEEEQTILVKQMNLLLSYEETVYEDKSLID---------------GQLTTVELTAAGKLL 224 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT 323 Y+ KTQM + +I+ L + A +S+L+++ +++ SL +D + T Sbjct: 225 QYVHKTQMRELSHLQALVHYEIKDYLQMSYATKSSLDLVENARTNKKHGSLYWLLDETKT 284 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL I PL I R + I F+ I + LK D+ R SR+ Sbjct: 285 AMGMRLLRSWIDRPLVSKEAILERQEIIQVFLNAFIERTDLSNSLKGVYDIERLSSRVSF 344 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 G+ PKD+ + + + + + L++ + V + LP+ LE + + + D Sbjct: 345 GKANPKDLLQLGHTL-AQVPYIKAILESFNSAYVDKLVNDIDSLPE-LEYLIRTAIDPDA 402 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P +G +R+G D LD R + + IA ++ K + + I NLKI +N GY+ Sbjct: 403 PATISEGSIIRNGFDERLDHYRKVMREGTGWIADIEAKERQASGINNLKIDYNKKDGYYF 462 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 VT+S+ S++ D F + T+ N R+ T EL +E ++ A + +E + F Sbjct: 463 HVTNSNLSLVP------DHFFRKATLKNSERYGTAELAKIEGQMLEAREESSSLEYDIFM 516 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 + + L ++ +A +D+ +LA +A+ +Y RP +++ +++GRH +VE Sbjct: 517 CIRAQVETYINRLQKLAKTLATVDVLQSLAAVAETNHYIRPQFNDNHVIKIQEGRHAVVE 576 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 K + Q +I N N + S + L+TGPNM GKST++RQ AL VIMAQMGS+V Sbjct: 577 KVMGVQE---YIPNSISF---NQETS--IQLITGPNMSGKSTYMRQLALTVIMAQMGSFV 628 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 A + + + D +F+R+G+AD+L SG+STFMVEM+E + +A++ S ++ DE+GRGTA Sbjct: 629 AADHVDLPLFDAIFTRIGAADDLISGQSTFMVEMMEANQAIKRASDNSLILFDELGRGTA 688 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DG+++A A IEY+H+ + + ATH+HELTDLS L N + + + + FLH Sbjct: 689 TYDGMALAQAIIEYIHDRVGAKTMFATHYHELTDLSTKLTSLVNVHVATLEKDGDVTFLH 748 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ--KDMRLYYPEIQTKE 861 K+ G AD SYGI V K+AGLP ++SRA ++L E + P +E Sbjct: 749 KIAEGPADKSYGIHVAKIAGLPEALLSRADEVLTRLEAQAQSAEIISVPSKVEPSSAARE 808 Query: 862 SKNNLSKND---KLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + +L ++ + + ++ +++ M+PL A+ TLY +K Sbjct: 809 GQLSLFPDEDKSQEIIHTLEAIDVMNMTPLQAMTTLYELK 848 >gi|209560232|ref|YP_002286704.1| DNA mismatch repair protein MutS [Streptococcus pyogenes NZ131] gi|238058945|sp|B5XJ75|MUTS_STRPZ RecName: Full=DNA mismatch repair protein mutS gi|209541433|gb|ACI62009.1| DNA mismatch repair protein MutS [Streptococcus pyogenes NZ131] Length = 851 Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust. Identities = 288/891 (32%), Positives = 475/891 (53%), Gaps = 67/891 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYPDAFLLFRMGDFYELFYEDAVKAAQLLEIGLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI++G+++A+ EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPHHSAQQYIDVLIELGYKVAVAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSAK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204 + +N+L+AV + +A++D+STG F ++ ++ + S+I + +E++ +L Sbjct: 121 PDSANNFLVAVDFDGCRYGLAYMDVSTGEFCVTDLADFTSVRSEIQNLKAKEVLLG-FDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E L + + + + V+ D S+ + G + VE TAA + Sbjct: 180 SEEEQTILVKQMNLLLSYEETVYEDKSLID---------------GQLTTVELTAAGKLL 224 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT 323 Y+ KTQM + +I+ L + A +S+L+++ +++ SL +D + T Sbjct: 225 QYVHKTQMRELSHLQALVHYEIKDYLQMSYATKSSLDLVENARTNKKHGSLYWLLDETKT 284 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL I PL I R + I F+ I + LK D+ R SR+ Sbjct: 285 AMGMRLLRSWIDRPLVSKEAILERQEIIQVFLNAFIERTDLSNSLKGVYDIERLSSRVSF 344 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 G+ PKD+ + + I + D P + V + LP+ LE + + + D Sbjct: 345 GKANPKDLLQLGHTLAQVPYIKAILESFDSPC-VDKLVNDIDSLPE-LEYLIRTAIDPDA 402 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P +G +R+G D LD R + + IA ++ K +E+ I NLKI +N GY+ Sbjct: 403 PATISEGSIIRNGFDERLDHYRKVMREGTGWIADIEAKERQESGINNLKIDYNKKDGYYF 462 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 VT+S+ S++ + F + T+ N R+ T EL +E ++ A + +E + F Sbjct: 463 HVTNSNLSLVP------EHFFRKATLKNSERYGTAELAKIEGQMLEAREESSSLEYDIFM 516 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 + + L ++ +A +D+ +LA++A+ +Y RP +++ +++GRH +VE Sbjct: 517 CIRAQVETYINRLQKLAKTLATVDVLQSLAVVAETNHYIRPQFNDNHVITIQEGRHAVVE 576 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 K + Q +I N S D+ + + L+TGPNM GKST++RQ AL VIMAQMGS+V Sbjct: 577 KVMGVQE---YIPN----SISFDQQTS-IQLITGPNMSGKSTYMRQLALTVIMAQMGSFV 628 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 A + + + D +F+R+G+AD+L SG+STFMVEM+E + +A++ S ++ DE+GRGTA Sbjct: 629 AADHVDLPLFDAIFTRIGAADDLISGQSTFMVEMMEANQAIKRASDNSLILFDELGRGTA 688 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DG+++A A IEY+H+ + + ATH+HELTDLS L N + + + + FLH Sbjct: 689 TYDGMALAQAIIEYIHDRVGAKTIFATHYHELTDLSTKLTSLVNVHVATLEKDGDVTFLH 748 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE-------------KLYHHN---Q 847 K+ G AD SYGI V K+AGLP +++ RA ++L E ++ N Q Sbjct: 749 KIAEGPADKSYGIHVAKIAGLPKSLLKRADEVLTRLETQSRSTEIISVPSQVESSNAVRQ 808 Query: 848 KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L+ E + E + L E I +N M+PL A+ TLY +K Sbjct: 809 GQLSLFGDEEKAHEIRQAL--------EAIDVMN---MTPLQAMTTLYELK 848 >gi|94995318|ref|YP_603416.1| DNA mismatch repair protein MutS [Streptococcus pyogenes MGAS10750] gi|166232145|sp|Q1J489|MUTS_STRPF RecName: Full=DNA mismatch repair protein mutS gi|94548826|gb|ABF38872.1| DNA mismatch repair protein mutS [Streptococcus pyogenes MGAS10750] Length = 851 Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust. Identities = 279/882 (31%), Positives = 479/882 (54%), Gaps = 49/882 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYPDAFLLFRMGDFYELFYEDAVKAAQLLEIGLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI++G+++A+ EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPHHSAQQYIDVLIELGYKVAVAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSAK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204 + +N+L+A+ + +A++D+STG F ++ ++ + S+I + +E++ +L Sbjct: 121 PDSANNFLVAIDFDGCRYGLAYMDVSTGEFCVTDLADFTSVRSEIQNLKAKEVLLG-FDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E L + + + + V+ D S+ + G + VE TAA + Sbjct: 180 SEEEQTILVKQMNLLLSYEETVYEDKSLID---------------GQLTTVELTAAGKLL 224 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT 323 Y+ KTQM + +I+ L + A +S+L+++ +++ SL +D + T Sbjct: 225 QYVHKTQMRELSHLQALVHYEIKDYLQMSYATKSSLDLVENARTNKKHGSLYWLLDETKT 284 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL I PL I R + I F+ I + LK D+ R SR+ Sbjct: 285 AMGMRLLRSWIDRPLVSKEAILERQEIIQVFLNAFIERTDLSNSLKGVYDIERLSSRVSF 344 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 G+ PKD+ + + + + + L++ + V + LP+ LE + + + D Sbjct: 345 GKANPKDLLQLGHTL-AQVPYIKAILESFNSAYVDKLVNDIDSLPE-LEYLIRTAIDPDA 402 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P +G +R+G D LD R + + IA ++ K + + I NLKI +N GY+ Sbjct: 403 PATISEGSIIRNGFDERLDHYRKVMREGTGWIADIEAKERQASGINNLKIDYNKKDGYYF 462 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 VT+S+ S++ D F + T+ N R+ T EL +E ++ A + +E + F Sbjct: 463 HVTNSNLSLVP------DHFFRKATLKNSERYGTAELAKIEGQMLEAREESSSLEYDIFM 516 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 + + L ++++A +D+ +LA++A+ +Y RP +++ +++GRH +VE Sbjct: 517 CIRAQVETYINRLQKLAKILATVDVLQSLAVVAETNHYIRPQFNDNHVITIQEGRHAVVE 576 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 K + Q +I N S D+ + + L+TGPNM GKST++RQ AL VIMAQMGS+V Sbjct: 577 KVMGVQE---YIPN----SISFDQQTS-IQLITGPNMSGKSTYMRQLALTVIMAQMGSFV 628 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 A + + + D +F+R+G+AD+L SG+STFMVEM+E + +A++ S ++ DE+GRGTA Sbjct: 629 AADHVDLPLFDAIFTRIGAADDLISGQSTFMVEMMEANQAIKRASDNSLILFDELGRGTA 688 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DG+++A A IEY+H+ + + ATH+HELTDLS L N + + + + FLH Sbjct: 689 TYDGMALAQAIIEYIHDRVGAKTIFATHYHELTDLSTKLTSLVNVHVATLEKDGDVTFLH 748 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKES- 862 K+ G AD SYGI V K+AGLP +++ RA ++L E ++ P++++ + Sbjct: 749 KIAEGPADKSYGIHVAKIAGLPKSLLKRADEVLTRLET--QSRSTEIMSVPPQVESSSAV 806 Query: 863 -KNNLS-----KNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + LS + + ++ +++ M+PL A+ TLY +K Sbjct: 807 RQGQLSLFGDEEKAHEIRQALEAIDVMNMTPLQAMTTLYELK 848 >gi|171057866|ref|YP_001790215.1| DNA mismatch repair protein MutS [Leptothrix cholodnii SP-6] gi|170775311|gb|ACB33450.1| DNA mismatch repair protein MutS [Leptothrix cholodnii SP-6] Length = 886 Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust. Identities = 295/897 (32%), Positives = 470/897 (52%), Gaps = 53/897 (5%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM QY+ IK PD+LVFYRMGDFYE+FFDDA LA R L ITLT RG+ G+ + M GVP Sbjct: 1 MMAQYLRIKREFPDTLVFYRMGDFYEVFFDDARLAHRLLDITLTTRGQSNGEPVVMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 V Y+ KLIK G +AI EQ+ + K V R VVR+VTPGT+T+ +LL+ Sbjct: 61 VQALESYLAKLIKRGQAVAIAEQV-----GEVGAGKGPVERKVVRVVTPGTITDTELLAE 115 Query: 148 TDSNYLMAVARIRTE----WAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 + L+A+A+ + +AW+ +++G +S + L + + R+ P E++ S E Sbjct: 116 REDTRLLAIAQTGPASAPLYGLAWLALASGQLGLSECSERELDAWLARLAPAEVLVS-AE 174 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSF-SQVEKTAAAA 262 + + L A+P FD ++ E ++ + + + F + AAAA Sbjct: 175 IDSQRRPAALRALAAPLTARPGWQFDSALGERKLREQLRVAHLSGFNAQDLSAAHAAAAA 234 Query: 263 AISYIKKTQ-----MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 +S+ + TQ VN T+ E L + A NLE++ TL G +LL Sbjct: 235 LLSFAEHTQGRALSHVNSLTV-----ERATDLLELPPATHRNLELIETLRGETAPTLLSL 289 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D TG G RL + PL + T R +I + + P+++ L+ DV R Sbjct: 290 LDTCRTGMGSRLLRHWLTHPLRERTVARERHAAIAALL-DARAAEPLREALRHVSDVQRI 348 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKTL 435 +R + + P+++A +R+ + + + L + N P +L A+ S+ + L Sbjct: 349 TARTALRQVRPRELAGLRETL-AHLPTLRGQVPNGAPLLADLHAALTP----DASIAELL 403 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 ++++ RDGG + G DA LDE R++ + L+ + E T I NL++++ Sbjct: 404 QRAVAEEPAVLLRDGGVIAAGFDADLDELRAIATNCDAFLLDLEARERERTGIANLRVQY 463 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N G++IEVT + D + RQT+ N R+ T EL E++ +A +L Sbjct: 464 NKVHGFYIEVTQGQVDKVPLD------YRRRQTLKNAERYITPELKAFEDKALSAQERSL 517 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 E +E L +A+ +L + +A +D A A A ++C P N ++ Sbjct: 518 AREKWLYEQLLDALQPHLNALSELGRALASLDALAAFAERAATLDWCAPEFVNHPCLDIE 577 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE L + FIANDC L ++ ++ +LTGPNMGGKSTF+RQ A+I + Sbjct: 578 QGRHPVVEARLAETGGGNFIANDCRLD-----SARRMVILTGPNMGGKSTFMRQVAVIAL 632 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +A +GSYVPA+ A +G +D + +R+G+AD+LA+ +STFM+EM E ++IL+ A+ S V++ Sbjct: 633 LAAIGSYVPAARARLGPLDAIHTRIGAADDLANAQSTFMLEMTEASAILHSASEHSLVLM 692 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGL++A A +LH+ N+ L ATH+ ELT+ + N + ++S Sbjct: 693 DEIGRGTSTFDGLALAGAIGSHLHDRNKSFTLFATHYFELTEFPARHRHAVNMHVSAAES 752 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY- 854 + I+FLH + G A SYG+QV +LAG+P +V+ +A + L + E Q + L+ Sbjct: 753 GDDIVFLHAIEAGPASRSYGVQVARLAGMPGSVLRQARNALDSLEAQQRAGQAQIDLFAG 812 Query: 855 ----PEIQTKES--------KNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 PE++ + ++ + + D +SP AL LY +KA Sbjct: 813 PDVSPEVEAAAPISIALTPVSTPQATAHAAVLDALADVEPDNLSPREALAALYRLKA 869 >gi|295397556|ref|ZP_06807636.1| DNA mismatch repair protein MutS [Aerococcus viridans ATCC 11563] gi|294974196|gb|EFG49943.1| DNA mismatch repair protein MutS [Aerococcus viridans ATCC 11563] Length = 868 Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust. Identities = 282/901 (31%), Positives = 484/901 (53%), Gaps = 68/901 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY E+K PD+ +F+R+GDFYE+F DDAL A++ L ITLT R K+ IPMCG Sbjct: 8 TPMMEQYNEMKGQYPDAFLFFRLGDFYEMFNDDALKAAQILEITLTSRNKNAEDPIPMCG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H+A+ YI+ L+ G+++AI EQ+E P + K +V+R VV+++TPGT D + Sbjct: 68 IPYHSASEYIKTLVSQGYKVAIAEQLEDP-----KLTKGMVKRGVVKVLTPGTYMNDSI- 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSE--- 201 ++NYL A+ + ++ +A+ D+ TG K++T + + ++++ ++ +E++ S+ Sbjct: 122 GIVENNYLSALDYVNGQYILAFSDVGTGELKVTTLDDFNAVLTEFAQLQSKELVVSQSVP 181 Query: 202 ----KELSHAEYKSL------FETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS 251 +EL H + +L ET + + D S + +T V+ S Sbjct: 182 KDQVEELQHLQSFTLSPFELTAETRAKTRESYKQILADISDDQELNGLLLLLTYVN---S 238 Query: 252 FSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSR 310 S AA Y ++ L +D A+SNLE+ ++ + R Sbjct: 239 MSHQAIDHWQAATHY------------------EVAHYLHMDYYAKSNLELTESVRTKKR 280 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 + SLL ++ + T G RL + PL I R I I++ I+ +L Sbjct: 281 QGSLLAFLNKTETAMGFRLLKNWLDRPLISLPAIERRQAQIEDLIEHYFQRLEIKDLLHG 340 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDG---IRSGINILNLFLKNDLPEELRGAVE-KLKK 426 D+ R ++++ IG PK++ + + I+ ++ ++ E + ++ ++ Sbjct: 341 VYDLERLVAKVAIGNVNPKELLQLNQSLSRVPGIIDTVDQIAADNEDESVWANIQGQITA 400 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 LP +L T+++ + +D P +DG + DG + LDE R ++ IA LQ +T Sbjct: 401 LP-ALTDTIAAAIKEDAPATLKDGNVIADGFNPQLDEYRDAMRNGQQWIAQLQADERSKT 459 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 IK+LK+ +N GY+IEVT ++ +L++ R+ +QT++N RF T EL ++E + Sbjct: 460 GIKSLKVGYNKVFGYYIEVTKANLHLLEEG-----RYDRKQTLTNAERFITPELKEVEAK 514 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP-I 605 I A + ++E + F+ + + +L + +A ID+ +LA +++ Y +P Sbjct: 515 ILEAEEQSQVLEHQIFQAVREEVKRHQATLQAIASTVATIDVLQSLAEISETHQYVKPQF 574 Query: 606 IDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKST 665 + + + +K+ RHP+VE + Q F+ ND + + ++TGPNM GKST Sbjct: 575 MTDKRDLYLKESRHPVVEGVIGQNR---FVPNDIVMDPET-----SILMITGPNMSGKST 626 Query: 666 FLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILN 725 ++RQ LIVI+AQMGS+VPA A + I DK+F+R+G+AD+L +G+STFMVEM+E L Sbjct: 627 YMRQLGLIVILAQMGSFVPAKEARLPIFDKIFTRIGAADDLLAGQSTFMVEMMEANQALQ 686 Query: 726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRF 785 AT+ S ++ DE+GRGT+T DG+++A A + Y+H+ + L +TH+HELT L +SL R Sbjct: 687 HATDNSLLLFDELGRGTSTYDGIALAQAILVYIHDHFDAKVLFSTHYHELTALDESLPRL 746 Query: 786 HNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--KLY 843 N + S+ + ++FLHKV G D SYGI V KLAG+P ++ A +L+ E L Sbjct: 747 ANIHVGASEEDGELVFLHKVFNGATDKSYGIHVAKLAGMPGELLQNAQMVLQELEANNLN 806 Query: 844 HHNQKDMRLYYPEIQTKESKNNLSKN-----DKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 N+ + +Q + SK + + + ++K ++ ++P+ AL L +K Sbjct: 807 EVNKDQQLSLFDVVQEETSKKPVDNRPVDTPSQKVIAQLKSEDIYNLTPIQALNFLAELK 866 Query: 899 A 899 + Sbjct: 867 S 867 >gi|229047452|ref|ZP_04193044.1| DNA mismatch repair protein mutS [Bacillus cereus AH676] gi|229151970|ref|ZP_04280166.1| DNA mismatch repair protein mutS [Bacillus cereus m1550] gi|228631525|gb|EEK88158.1| DNA mismatch repair protein mutS [Bacillus cereus m1550] gi|228723896|gb|EEL75249.1| DNA mismatch repair protein mutS [Bacillus cereus AH676] Length = 884 Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust. Identities = 272/831 (32%), Positives = 472/831 (56%), Gaps = 65/831 (7%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R + IPMCGVP Sbjct: 1 MIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 61 YHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTIDE 115 Query: 148 TDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEKEL 204 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 116 KENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DSSF 174 Query: 205 SHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 S E L ETL A A P +H + N++ + ++ Sbjct: 175 SKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLIKAVGRL---- 221 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSLL 315 +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + SLL Sbjct: 222 ----FNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGSLL 274 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T GGR+ + + PL +I RL+ + F+ + L +++ LK D+ Sbjct: 275 WLLDKTKTAMGGRMLKQWMERPLIQKERIEERLEMVETFVNDYFLREDLKEKLKEVYDLE 334 Query: 376 RSLSRLKIGRGEPKDIAVIRD------GIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 R ++ G +D+ +R I I++L+ + L ++GA + Sbjct: 335 RLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYASRL---IQGA-----DPCE 386 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 SL + L + ++ P +DG ++DG + LD+ R + K IA L+ + + T IK Sbjct: 387 SLTELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGIK 446 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 +LKI +N GY+IEVT ++ + L + R+ +QT++N RF T EL + E I Sbjct: 447 SLKIGYNRIFGYYIEVTKANLAAL-----PEGRYERKQTLANAERFITDELKEKETLILE 501 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 A + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 502 AEEKIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTK 561 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 +KDGRHP+VEK L + K ++ NDC + P + + ++L+TGPNM GKST++RQ Sbjct: 562 REIFIKDGRHPVVEKVL---NGKLYVPNDCIM--PENMD---VFLITGPNMSGKSTYMRQ 613 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 AL+ +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ Sbjct: 614 LALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASE 673 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 +S ++ DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L +SL + N Sbjct: 674 RSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLDQLKNVH 733 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 734 VSAIEENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 784 >gi|228954046|ref|ZP_04116075.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229071266|ref|ZP_04204490.1| DNA mismatch repair protein mutS [Bacillus cereus F65185] gi|229180046|ref|ZP_04307390.1| DNA mismatch repair protein mutS [Bacillus cereus 172560W] gi|228603255|gb|EEK60732.1| DNA mismatch repair protein mutS [Bacillus cereus 172560W] gi|228711887|gb|EEL63838.1| DNA mismatch repair protein mutS [Bacillus cereus F65185] gi|228805612|gb|EEM52202.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 884 Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust. Identities = 272/831 (32%), Positives = 472/831 (56%), Gaps = 65/831 (7%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R + IPMCGVP Sbjct: 1 MIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 61 YHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTIDE 115 Query: 148 TDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEKEL 204 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 116 KENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DSSF 174 Query: 205 SHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 S E L ETL A A P +H + N++ + ++ Sbjct: 175 SKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLIKAVGRL---- 221 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSLL 315 +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + SLL Sbjct: 222 ----FNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGSLL 274 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T GGR+ + + PL +I RL+ + F+ + L +++ LK D+ Sbjct: 275 WLLDKTKTAMGGRMLKQWMERPLIQKERIEERLEMVETFVNDYFLREDLKEKLKEVYDLE 334 Query: 376 RSLSRLKIGRGEPKDIAVIRD------GIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 R ++ G +D+ +R I I++L+ + L ++GA + Sbjct: 335 RLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYASRL---IQGA-----DPCE 386 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 SL + L + ++ P +DG ++DG + LD+ R + K IA L+ + + T IK Sbjct: 387 SLTELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGIK 446 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 +LKI +N GY+IEVT ++ + L + R+ +QT++N RF T EL + E I Sbjct: 447 SLKIGYNRIFGYYIEVTKANLAAL-----PEGRYERKQTLANAERFITDELKEKETLILE 501 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 A + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 502 AEEKIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTK 561 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 +KDGRHP+VEK L + K ++ NDC + P + + ++L+TGPNM GKST++RQ Sbjct: 562 REIFIKDGRHPVVEKVL---NGKLYVPNDCIM--PENMD---VFLITGPNMSGKSTYMRQ 613 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 AL+ +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ Sbjct: 614 LALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASE 673 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 +S ++ DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L +SL + N Sbjct: 674 RSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLNQLKNVH 733 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 734 VSAIEENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 784 >gi|229092807|ref|ZP_04223945.1| DNA mismatch repair protein mutS [Bacillus cereus Rock3-42] gi|228690605|gb|EEL44386.1| DNA mismatch repair protein mutS [Bacillus cereus Rock3-42] Length = 882 Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust. Identities = 271/827 (32%), Positives = 464/827 (56%), Gaps = 57/827 (6%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R + IPMCGVP Sbjct: 1 MIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 61 YHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTIDE 115 Query: 148 TDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEKEL 204 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 116 KENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DSSF 174 Query: 205 SHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 S E L ETL A A P +H + N++ + ++ Sbjct: 175 SKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLIKAVGRL---- 221 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSLL 315 +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + SLL Sbjct: 222 ----FNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGSLL 274 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T GGR+ + + PL +I RL+ + F+ + L +++ LK D+ Sbjct: 275 WLLDKTKTAMGGRMLKQWMERPLIQKERIEERLEMVETFVNDYFLREDLKEKLKEVYDLE 334 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSLEK 433 R ++ G +D+ +R + IL L N L + +SL + Sbjct: 335 RLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPC----ESLTE 390 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + ++ P +DG ++DG + LD+ R + K IA L+ + + T IK+LKI Sbjct: 391 LLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGIKSLKI 450 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GY+IEVT ++ L + R+ +QT++N RF T EL + E I A Sbjct: 451 GYNRIFGYYIEVTKANLGAL-----PEGRYERKQTLANAERFITDELKEKETLILEAEEK 505 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 506 IVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTKREIF 565 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++RQ AL+ Sbjct: 566 IKDGRHPVVEKVL---NGKLYVPNDCIMPEKMD-----VFLITGPNMSGKSTYMRQLALV 617 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ +S + Sbjct: 618 TVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERSLI 677 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 + DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L +SL + N + Sbjct: 678 LFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLDQLKNVHVSAI 737 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 738 EENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 784 >gi|228986913|ref|ZP_04147040.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772862|gb|EEM21301.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 886 Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust. Identities = 271/827 (32%), Positives = 464/827 (56%), Gaps = 57/827 (6%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R + IPMCGVP Sbjct: 1 MIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 61 YHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTIDE 115 Query: 148 TDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEKEL 204 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 116 KENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DSSF 174 Query: 205 SHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 S E L ETL A A P +H + N++ + ++ Sbjct: 175 SKEELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLIKAVGRL---- 221 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSLL 315 +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + SLL Sbjct: 222 ----FNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGSLL 274 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T GGR+ + + PL +I RL+ + F+ + L +++ LK D+ Sbjct: 275 WLLDKTKTAMGGRMLKQWMERPLIQKERIEERLEMVETFVNDYFLREDLKEKLKEVYDLE 334 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSLEK 433 R ++ G +D+ +R + IL L N L + +SL + Sbjct: 335 RLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPC----ESLTE 390 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + ++ P +DG ++DG + LD+ R + K IA L+ + + T IK+LKI Sbjct: 391 LLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGIKSLKI 450 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GY+IEVT ++ L + R+ +QT++N RF T EL + E I A Sbjct: 451 GYNRIFGYYIEVTKANLGAL-----PEGRYERKQTLANAERFITDELKEKETLILEAEEK 505 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 506 IVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTKREIF 565 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++RQ AL+ Sbjct: 566 IKDGRHPVVEKVL---NGKLYVPNDCIMPEKMD-----VFLITGPNMSGKSTYMRQLALV 617 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ +S + Sbjct: 618 TVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERSLI 677 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 + DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L +SL + N + Sbjct: 678 LFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLDQLKNVHVSAI 737 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 738 EENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 784 >gi|323128225|gb|ADX25522.1| DNA mismatch repair protein MutS [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 851 Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust. Identities = 282/880 (32%), Positives = 474/880 (53%), Gaps = 45/880 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L I LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYPDAFLLFRMGDFYELFYDDAVKAAQLLEIGLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI++G+++A+ EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPHHSAQQYIDVLIELGYKVAVAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSAK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204 + +N+L+AV + +A++D+STG F ++ ++ + S+I + +E++ +L Sbjct: 121 PDSANNFLVAVDFDGCRYGLAYMDVSTGEFCVTDLADFTSVRSEIQNLKAKEVLLG-FDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E L + + + + V+ D S+ + G + VE TAA + Sbjct: 180 SEEEQTILVKQMNLLLSYEETVYEDKSLID---------------GQLTTVELTAAGKLL 224 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT 323 Y+ KTQM + +I+ L + A +S+L+++ +++ SL +D + T Sbjct: 225 QYVHKTQMRELSHLQALIHYEIKDYLQMSYATKSSLDLVENARTNKKHGSLYWLLDETKT 284 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL I PL I R + I F+ I + LK D+ R SR+ Sbjct: 285 AMGMRLLRSWIDRPLVSKEAILERQEIIQVFLNAFIERTDLSNSLKGVYDIERLSSRVSF 344 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 G+ PKD+ + + + + + L++ + V + LP+ LE + + + D Sbjct: 345 GKANPKDLLQLGHTL-AQVPYIKAILESFNSAYVDKLVNDIDSLPE-LEYLIRTAIDPDA 402 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P +G +R+G D LD R + + IA ++ K + + I NLKI +N GY+ Sbjct: 403 PATISEGSIIRNGFDERLDHYRKVMREGTGWIADIEAKERQASGINNLKIDYNKKDGYYF 462 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 VT+S+ S++ D F + T+ N R+ T EL +E ++ A + +E + F Sbjct: 463 HVTNSNLSLVP------DHFFRKATLKNSERYGTAELAKIEGQMLEAREESSSLEYDIFM 516 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 + + L ++ +A +D+ +LA +A+ +Y RP +++ +++GRH +VE Sbjct: 517 CIRAQVETYINRLQKLAKTLATVDVLQSLAAVAETNHYIRPQFNDNHVIKIQEGRHAVVE 576 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 K + Q +I N N + S + L+TGPNM GKST++RQ AL VIMAQMGS+V Sbjct: 577 KVMGVQE---YIPNSISF---NQETS--IQLITGPNMSGKSTYMRQLALTVIMAQMGSFV 628 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 A + + + D +F+R+G+AD+L SG+STFMVEM+E + +A++ S ++ DE+GRGTA Sbjct: 629 AADHVDLPLFDAIFTRIGAADDLISGQSTFMVEMMEANQAIKRASDNSLILFDELGRGTA 688 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DG+++A A IEY+H+ + + ATH+HELTDLS L N + + + + FLH Sbjct: 689 TYDGMALAQAIIEYIHDRVGAKTMFATHYHELTDLSTKLTSLVNVHVATLEKDGDVTFLH 748 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ--KDMRLYYPEIQTKE 861 K+ G AD SYGI V K+AGLP ++SRA ++L E + P +E Sbjct: 749 KIAEGPADKSYGIHVAKIAGLPEALLSRADEVLTRLEAQAQSAEIISVPSKVEPSSAARE 808 Query: 862 SKNNLSKND---KLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + +L ++ + + ++ +++ M+PL A+ TLY +K Sbjct: 809 GQLSLFPDEDKSQEIIHTLEAIDVMNMTPLQAMTTLYELK 848 >gi|94989446|ref|YP_597547.1| DNA mismatch repair protein MutS [Streptococcus pyogenes MGAS9429] gi|94993335|ref|YP_601434.1| DNA mismatch repair protein MutS [Streptococcus pyogenes MGAS2096] gi|166232142|sp|Q1J9C1|MUTS_STRPB RecName: Full=DNA mismatch repair protein mutS gi|166232143|sp|Q1JJH0|MUTS_STRPC RecName: Full=DNA mismatch repair protein mutS gi|94542954|gb|ABF33003.1| DNA mismatch repair protein [Streptococcus pyogenes MGAS9429] gi|94546843|gb|ABF36890.1| DNA mismatch repair protein mutS [Streptococcus pyogenes MGAS2096] Length = 851 Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust. Identities = 284/887 (32%), Positives = 482/887 (54%), Gaps = 59/887 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYPDAFLLFRMGDFYELFYEDAVKAAQLLEIGLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI++G+++A+ EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPHHSAQQYIDVLIELGYKVAVAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSAK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204 + +N+L+AV + +A++D+STG F ++ ++ + S+I + +E++ +L Sbjct: 121 PDSANNFLVAVDFDGCRYGLAYMDVSTGEFCVTDLADFTSVRSEIQNLKAKEVLLG-FDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E L + + + + V+ D S+ + G + VE TAA + Sbjct: 180 SEEEQTILVKQMNLLLSYEETVYEDKSLID---------------GQLTTVELTAAGKLL 224 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT 323 Y+ KTQM + +I+ L + A +S+L+++ +++ SL +D + T Sbjct: 225 QYVHKTQMRELSHLQALVHYEIKDYLQMSYATKSSLDLVENARTNKKHGSLYWLLDETKT 284 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL I PL I R + I F+ I + LK D+ R SR+ Sbjct: 285 AMGMRLLRSWIDRPLVSKEAILERQEIIQVFLNAFIERTDLSNSLKGVYDIERLSSRVSF 344 Query: 384 GRGEPKDIAVIRDGIRSGINILNL-FLKNDLPEELRGAVEKL----KKLPQSLEKTLSSM 438 G+ PKD+ ++ G + + ++K L V+KL LP+ LE + + Sbjct: 345 GKANPKDL------LQLGYTLAQVPYIKAILESFDSPCVDKLVNDIDSLPE-LEYLIRTA 397 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + D P +G +R G D LD R + + IA ++ K +E+ I NLKI +N Sbjct: 398 IDPDAPATISEGSIIRTGFDERLDHYRKVMREGTGWIADIEAKERQESGINNLKIDYNKK 457 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+ VT+S+ S++ + F + T+ N R+ T EL +E ++ A + +E Sbjct: 458 DGYYFHVTNSNLSLVP------EHFFRKATLKNSERYGTAELAKIEGQMLEAREESSSLE 511 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F + + L ++ +A +D+ +LA++A+ +Y RP +++ +++GR Sbjct: 512 YDIFMCIRAQVETYINRLQKLAKTLATVDVLQSLAVVAETNHYIRPQFNDNHVITIQEGR 571 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 H +VEK + Q +I N S D+ + + L+TGPNM GKST++RQ AL VIMAQ Sbjct: 572 HAVVEKVMGVQE---YIPN----SISFDQQTS-IQLITGPNMSGKSTYMRQLALTVIMAQ 623 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 MGS+V A + + + D +F+R+G+AD+L SG+STFMVEM+E + +A++ S ++ DE+ Sbjct: 624 MGSFVAADHVDLPLFDAIFTRIGAADDLISGQSTFMVEMMEANQAIKRASDNSLILFDEL 683 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGTAT DG+++A A IEY+H+ + + ATH+HELTDLS L N + + + Sbjct: 684 GRGTATYDGMALAQAIIEYIHDRVGAKTIFATHYHELTDLSTKLTSLVNVHVATLEKDGD 743 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 + FLHK+ G AD SYGI V K+AGLP +++ RA ++L E ++ P+++ Sbjct: 744 VTFLHKIAEGPADKSYGIHVAKIAGLPKSLLKRADEVLTRLET--QSRSTEIMSVPPQVE 801 Query: 859 T----KESKNNLSKNDKLFVE---KIKCLNLDEMSPLTALKTLYAVK 898 + ++ + +L +D+ E ++ +++ M+P A+ TLY +K Sbjct: 802 SSSAVRQGQLSLFGDDEKAHEIRQALEAIDVMNMTPFQAMTTLYELK 848 >gi|228909593|ref|ZP_04073416.1| DNA mismatch repair protein mutS [Bacillus thuringiensis IBL 200] gi|228849882|gb|EEM94713.1| DNA mismatch repair protein mutS [Bacillus thuringiensis IBL 200] Length = 886 Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust. Identities = 270/827 (32%), Positives = 464/827 (56%), Gaps = 57/827 (6%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R IPMCGVP Sbjct: 1 MIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 61 HHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTIDE 115 Query: 148 TDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEKEL 204 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 116 KENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DSSF 174 Query: 205 SHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 S E L ETL A A P +H + N++ + ++ Sbjct: 175 SKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLIKAIGRL---- 221 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSLL 315 +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + SLL Sbjct: 222 ----FNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGSLL 274 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T GGR+ + + PL K+ RL+ + F+ + L +++ LK D+ Sbjct: 275 WLLDKTKTAMGGRMLKQWMERPLIQKEKVEERLEMVETFVNDYFLREDLKEKLKEVYDLE 334 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSLEK 433 R ++ G +D+ +R + IL L N L + +SL + Sbjct: 335 RLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPC----ESLTE 390 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + ++ P +DG ++DG + LD+ R + K IA L+ + + T +K+LKI Sbjct: 391 LLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGVKSLKI 450 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GY+IEVT ++ + L + R+ +QT++N RF T EL + E I A Sbjct: 451 GYNRIFGYYIEVTKANLAAL-----PEGRYERKQTLANAERFITDELKEKETLILEAEEK 505 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 506 IVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTKREIF 565 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++RQ AL+ Sbjct: 566 IKDGRHPVVEKVL---NGKLYVPNDCIMPEKMD-----VFLITGPNMSGKSTYMRQLALV 617 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ +S + Sbjct: 618 TVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERSLI 677 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 + DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L +SL + N + Sbjct: 678 LFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLDQLKNVHVSAI 737 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 738 EENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 784 >gi|148653814|ref|YP_001280907.1| DNA mismatch repair protein MutS [Psychrobacter sp. PRwf-1] gi|148572898|gb|ABQ94957.1| DNA mismatch repair protein MutS [Psychrobacter sp. PRwf-1] Length = 1014 Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust. Identities = 308/931 (33%), Positives = 485/931 (52%), Gaps = 97/931 (10%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK-H 76 +E NL TPMM QY+ +K+ P++L+ YRMGDFYELFF DA A+ L ITLT+RG Sbjct: 16 VEYNLDDHTPMMVQYLTLKAQYPNALLLYRMGDFYELFFTDAQRAADILDITLTRRGNDK 75 Query: 77 LGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEA-------KKRGNKSLVRRN 129 G +I M GVP H A Y+ +LI G + ICEQ+E E K K ++RR Sbjct: 76 AGNNIAMAGVPFHAAESYMARLIAAGETVVICEQVEDAPELNEEHDTNKPNAAKGIMRRE 135 Query: 130 VVRLVTPGTLTEDQLLSPTDSNYLMAVA-RIRTEW---------------AIAWIDISTG 173 VV+ +T GTLT+D L++P + ++A+ ++ W I+ +DI+ G Sbjct: 136 VVKTLTAGTLTDDALIAPNHTPSVVALDFNLKKNWQHLKSSSNQASLNQIGISQLDINAG 195 Query: 174 IFK-------------------ISTSNHD-------RLISDIMRIDPREIIFSEK---EL 204 + +S S D RL++ + R P E+I E + Sbjct: 196 TIRTQTLPLSEVIKPAEANIAYVSESQVDYEVLLKQRLLTVLNRFAPSEVIIPETLSDDW 255 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAA 263 H L+ + +VA + F E+ + +N+ T++ G + S V +T +AA Sbjct: 256 RHWLQDKLYCPVISVAASD---FHPQHAGET-VCRQFNVQTLEGLGIAESLVAQTTSAAL 311 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 I Y ++TQ + P + E + L ID + NLE+ +S + SLL ++ + Sbjct: 312 IHYAQQTQQRHTPQLTELIVERDEDYLIIDDISSRNLELFTPVSPTGT-SLLSVVNQCQS 370 Query: 324 GAGGRLFAERIASPLTDSTKINT---RLDSINFFIQNPIL--INPIQKILKSSPDVPRSL 378 G RL ++ PL +T + + RLD+ + IQ P I +Q+ L S D+ R Sbjct: 371 AMGRRLLINQLKRPLRLATHVESLGLRLDACQWLIQTPTSAEITQLQQSLHSIADIERIS 430 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKL-KKLPQS------L 431 SR+ + +P+D+ + D IR + + L + G + L + LP + Sbjct: 431 SRIALHSAKPRDLRRLADSIRHSEQLAHTLQSLGLQADSEGLLPSLLQNLPLQKNTLLKI 490 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + + S + ++ P RDGG + +G D+ D L D ++ + + + + ++ +L Sbjct: 491 AEHIESAIIEEPPAHIRDGGMIAEGYDSEFDRLVHLHDNIQQTLDDMADEARQNYQLPSL 550 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 K+ N G++ E+ + AS + D FI RQT+ N RF T L +LE +A Sbjct: 551 KVGFNKVSGFYFELPKAQAST------APDVFIRRQTLKNSERFITEPLKNLEVEYLDAQ 604 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + AL E ++ L + EQ + L S IA ID+ + A+LAK+ ++ RP +D S + Sbjct: 605 SLALSCEKALYQGLLVRLSEQLQYLQQLSAAIAQIDVLLNWAVLAKDNDWVRPTLDPSGS 664 Query: 612 FI-VKDGRHPIVEKTLK--------QQSSKP--FIANDCDLSCPNDKNSGKLWLLTGPNM 660 ++ ++ GRH +VE + Q +S P F+ANDC L + + +L L+TGPNM Sbjct: 665 YLDIRQGRHLVVEAMSQPKATHGNSQPTSGPQHFVANDCQLG--TESFNERLLLITGPNM 722 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GGKST++RQ ALIV++A GS+VPA+ A +G +D++F+R+GSAD+LA G+STFMVEMIET Sbjct: 723 GGKSTYMRQTALIVLLACCGSFVPAASATLGDIDRIFTRIGSADDLAGGKSTFMVEMIET 782 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 A ILN A++ S V++DE+GRGT+T DGL+IA A L E L ATH+ ELT+LS+ Sbjct: 783 AQILNLASHCSLVLMDEVGRGTSTTDGLAIAHACAVQLCEMGSLT-LFATHYFELTELSQ 841 Query: 781 SLK---RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILK 837 + N + S + ++ LHK+ PG A S+G+ V K+AG+P+ V+ A L Sbjct: 842 QRNLSGKLRNVHVAASHIDGQLLLLHKIEPGAASSSFGLHVAKMAGIPDKVLIAAERYLS 901 Query: 838 TFEKLYHHNQKDMRLYYPEIQTKESKNNLSK 868 + L N ++P I +++ N K Sbjct: 902 LQKSL---NAATQERHHPSITPRDNHANFDK 929 >gi|228902272|ref|ZP_04066432.1| DNA mismatch repair protein mutS [Bacillus thuringiensis IBL 4222] gi|228857387|gb|EEN01887.1| DNA mismatch repair protein mutS [Bacillus thuringiensis IBL 4222] Length = 886 Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust. Identities = 270/827 (32%), Positives = 465/827 (56%), Gaps = 57/827 (6%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R IPMCGVP Sbjct: 1 MIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 61 HHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTIDE 115 Query: 148 TDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEKEL 204 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 116 KENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DSSF 174 Query: 205 SHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 S E L ETL A A P +H + N++ + ++ Sbjct: 175 SKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLIKAIGRL---- 221 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSLL 315 +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + SLL Sbjct: 222 ----FNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGSLL 274 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T GGR+ + + PL K+ RL+ + F+ + L +++ LK D+ Sbjct: 275 WLLDKTKTAMGGRMLKQWMERPLIQKEKVEERLEMVETFVNDYFLREDLKEKLKEVYDLE 334 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSLEK 433 R ++ G +D+ +R + IL L N L + + +SL + Sbjct: 335 RLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQSADPC----ESLTE 390 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + ++ P +DG ++DG + LD+ R + K IA L+ + + T +K+LKI Sbjct: 391 LLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGVKSLKI 450 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GY+IEVT ++ + L + R+ +QT++N RF T EL + E I A Sbjct: 451 GYNRIFGYYIEVTKANLAAL-----PEGRYERKQTLANAERFITDELKEKETLILEAEEK 505 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 506 IVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTKREIF 565 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++RQ AL+ Sbjct: 566 IKDGRHPVVEKVL---NGKLYVPNDCIMPEKMD-----VFLITGPNMSGKSTYMRQLALV 617 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ +S + Sbjct: 618 TVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERSLI 677 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 + DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L +SL + N + Sbjct: 678 LFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLDQLKNVHVSAI 737 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 738 EENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 784 >gi|56479127|ref|YP_160716.1| DNA mismatch repair protein MutS [Aromatoleum aromaticum EbN1] gi|81677300|sp|Q5NYP9|MUTS_AZOSE RecName: Full=DNA mismatch repair protein mutS gi|56315170|emb|CAI09815.1| DNA mismatch repair protein [Aromatoleum aromaticum EbN1] Length = 879 Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust. Identities = 297/896 (33%), Positives = 460/896 (51%), Gaps = 58/896 (6%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S TPMM+QY+ IK+ +PD+L+FYRMGDFYELFFDDA A+R L ITLT RG+ G I M Sbjct: 23 SHTPMMQQYLRIKAQHPDTLLFYRMGDFYELFFDDAEKAARLLDITLTTRGQSAGTPIRM 82 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H Y+ +L+K+G + I EQ+ P K + R V R+VTPGTLT+ Sbjct: 83 AGVPFHAVEQYLARLVKLGESVVIAEQVGEP-----GATKGPMERAVSRIVTPGTLTDAA 137 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 LL + L+A R +AW++++ G ++ ++L + R+ P E++ + Sbjct: 138 LLDDRIDSLLLAATLHRGVLGLAWLNLANGDLRVMECPAEQLQAQFERLRPAEVLVPDG- 196 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKTAAAA 262 L+ +SL L +A Q FD E + ++ + F + V AAAA Sbjct: 197 LALPLVESLSPVLRRLADWQ----FDAGNGERLLTAHFGTRDLAGFDAEGLPVALAAAAA 252 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 Y + TQ + + E L +D+A R NLE+ TL G +L +D I Sbjct: 253 LFEYARSTQRQSLEHVTGLRVEREAEYLRLDAATRRNLELTETLRGEASPTLFSLLDSCI 312 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFF----------IQNPILINPIQKILKSSP 372 T G R + PL D R ++ I + ++ ++ L+ Sbjct: 313 TSMGSRWLRHALHHPLRDRGVAAQRHGAVGELAGSDAGAPADIGDARMLGAVRAALRGVA 372 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE-----ELRGAVEKLKKL 427 DV R +R+ + P+D+A + D + + L P+ +L A+ + Sbjct: 373 DVDRITARIALRSARPRDLAALSDSL---ARLPQLHAALGTPQAPLLCDLLAAI----AV 425 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 P + L ++ + RDGG + G DA LDE R ++ + +L+++ E + Sbjct: 426 PDNALDLLVRAVAAEPAAAVRDGGVIAPGFDAELDELRGIQSNCGEFLLALEVRERERSG 485 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 I LK++ N G++IEV+ ++ + D + RQT+ N R+ T EL E++ Sbjct: 486 IATLKVEFNKVHGFYIEVSHANTGKVPDD------YRRRQTLKNAERYITPELKAFEDKA 539 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 +A AL E +E L A+ +L ++ +A +D A A A +Y P Sbjct: 540 LSAQERALAREKLLYEALLEALAAHIPALQRIARALACLDGLGAFAEAAVRHSYVCPQFS 599 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 + GRHP+VE+ ++ FI+N+C L+ + ++ L+TGPNMGGKSTF+ Sbjct: 600 AQPGVDIIGGRHPVVERQVED-----FISNNCRLA-----PTRRMLLITGPNMGGKSTFM 649 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ ALI ++A +G++VPA A +G +D +F+R+G++D+LASGRSTFMVEM E ++IL+ A Sbjct: 650 RQVALIALLAHVGAFVPARSARLGPLDAIFTRIGASDDLASGRSTFMVEMTEASAILHGA 709 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 T QS V++DEIGRGT+T DGL++A+A +L E NRC L ATH+ ELT L+ N Sbjct: 710 TEQSLVLMDEIGRGTSTFDGLALAFAIARHLLEKNRCLTLFATHYFELTRLNGDYPECAN 769 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--KLYHH 845 L + I+FLH V G A SYGI+V LAG+P +V+ A L+ E ++ + Sbjct: 770 VHLDAVEHAHRIVFLHAVEDGPASQSYGIEVAALAGIPGSVVREAKRRLRALENREVGNG 829 Query: 846 NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWT 901 Q D+ P+ + + + + L+ D +SP AL+ LYA+K T Sbjct: 830 PQADLFAALPDREPATPSHPA-------LTALAELDPDTLSPREALERLYALKRMT 878 >gi|229197880|ref|ZP_04324596.1| DNA mismatch repair protein mutS [Bacillus cereus m1293] gi|228585598|gb|EEK43700.1| DNA mismatch repair protein mutS [Bacillus cereus m1293] Length = 886 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 271/827 (32%), Positives = 466/827 (56%), Gaps = 57/827 (6%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R + IPMCGVP Sbjct: 1 MIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 61 YHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTIDE 115 Query: 148 TDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEKEL 204 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 116 KENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DSSF 174 Query: 205 SHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 S E L ETL A A P +H + N++ + ++ Sbjct: 175 SKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLIKAVGRL---- 221 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSLL 315 +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + SLL Sbjct: 222 ----FNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGSLL 274 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T GGR+ + + PL +I RL+ + F+ + L +++ LK D+ Sbjct: 275 WLLDKTKTAMGGRMLKQWMERPLIQKERIEERLEMVETFVNDYFLREDLKEKLKEVYDLE 334 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSLEK 433 R ++ G +D+ +R + IL L N L + +SL + Sbjct: 335 RLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPC----ESLTE 390 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + ++ P +DG ++DG + LD+ R + K IA L+ + + T IK+LKI Sbjct: 391 LLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGIKSLKI 450 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GY+IEVT ++ L + R+ +QT++N RF T EL + E I A Sbjct: 451 GYNRIFGYYIEVTKANLGAL-----PEGRYERKQTLANAERFITDELKEKETLILEAEEK 505 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 506 IVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTKREIF 565 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +KDGRHP+VEK L + K ++ NDC + P + + ++L+TGPNM GKST++RQ AL+ Sbjct: 566 IKDGRHPVVEKVL---NGKLYVPNDCIM--PENMD---VFLITGPNMSGKSTYMRQLALV 617 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ +S + Sbjct: 618 TVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERSLI 677 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 + DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L +SL + N + Sbjct: 678 LFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLDQLKNVHVSAI 737 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 738 EENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 784 >gi|229157348|ref|ZP_04285426.1| DNA mismatch repair protein mutS [Bacillus cereus ATCC 4342] gi|228626075|gb|EEK82824.1| DNA mismatch repair protein mutS [Bacillus cereus ATCC 4342] Length = 886 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 271/827 (32%), Positives = 464/827 (56%), Gaps = 57/827 (6%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R + IPMCGVP Sbjct: 1 MIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 61 YHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTIDE 115 Query: 148 TDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEKEL 204 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 116 KENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DSSF 174 Query: 205 SHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 S E L ETL A A P +H + N++ + ++ Sbjct: 175 SKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLIKAVGRL---- 221 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSLL 315 +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + SLL Sbjct: 222 ----FNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGSLL 274 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T GGR+ + + PL +I RL+ + F+ + L +++ LK D+ Sbjct: 275 WLLDKTKTAMGGRMLKQWMERPLIQKERIEERLEMVETFVNDYFLREDLKEKLKEVYDLE 334 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSLEK 433 R ++ G +D+ +R + IL L N L + +SL + Sbjct: 335 RLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPC----ESLTE 390 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + ++ P +DG ++DG + LD+ R + K IA L+ + + T IK+LKI Sbjct: 391 LLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGIKSLKI 450 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GY+IEVT ++ L + R+ +QT++N RF T EL + E I A Sbjct: 451 GYNRIFGYYIEVTKANLGAL-----PEGRYERKQTLANAERFITDELKEKETLILEAEEK 505 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 506 IVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTKREIF 565 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++RQ AL+ Sbjct: 566 IKDGRHPVVEKVL---NGKLYVPNDCIMPENMD-----VFLITGPNMSGKSTYMRQLALV 617 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ +S + Sbjct: 618 TVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERSLI 677 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 + DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L +SL + N + Sbjct: 678 LFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLDQLKNVHVSAI 737 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 738 EENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 784 >gi|228928819|ref|ZP_04091851.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228830626|gb|EEM76231.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 886 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 272/831 (32%), Positives = 467/831 (56%), Gaps = 65/831 (7%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R + IPMCGVP Sbjct: 1 MIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 61 YHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTIDE 115 Query: 148 TDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEKEL 204 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 116 KENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DSSF 174 Query: 205 SHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 S E L ETL A A P +H + N++ + ++ Sbjct: 175 SKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLIKAVGRL---- 221 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSLL 315 +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + SLL Sbjct: 222 ----FNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGSLL 274 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T GGR+ + + PL +I RL+ + F+ + L +++ LK D+ Sbjct: 275 WLLDKTKTAMGGRMLKQWMERPLIQKERIEERLEMVETFVNDYFLREDLKEKLKEVYDLE 334 Query: 376 RSLSRLKIGRGEPKDIAVIRD------GIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 R ++ G +D+ +R I I++L+ L ++GA + Sbjct: 335 RLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNVYAARL---IQGA-----DPCE 386 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 SL + L + ++ P +DG ++DG + LD+ R + K IA L+ + + T IK Sbjct: 387 SLTELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGIK 446 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 +LKI +N GY+IEVT ++ L + R+ +QT++N RF T EL + E I Sbjct: 447 SLKIGYNRIFGYYIEVTKANLGAL-----PEGRYERKQTLANAERFITDELKEKETLILE 501 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 A + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 502 AEEKIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTK 561 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++RQ Sbjct: 562 REIFIKDGRHPVVEKVL---NGKLYVPNDCIMPENMD-----VFLITGPNMSGKSTYMRQ 613 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 AL+ +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ Sbjct: 614 LALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASE 673 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 +S ++ DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L SL + N Sbjct: 674 RSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEDSLDQLKNVH 733 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 734 VSAIEENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 784 >gi|228935066|ref|ZP_04097896.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824636|gb|EEM70438.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 886 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 271/827 (32%), Positives = 464/827 (56%), Gaps = 57/827 (6%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R + IPMCGVP Sbjct: 1 MIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A +YI++L++ G+++A+CEQ+E+P AK +VRR VV+L+TPGT+ E + + Sbjct: 61 YHAAKNYIEQLVEKGYKVAVCEQVENPKTAK-----GVVRREVVQLITPGTMMEGRTIDE 115 Query: 148 TDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEKEL 204 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 116 KENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DSSF 174 Query: 205 SHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 S E L ETL A A P +H + N++ + ++ Sbjct: 175 SKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLIKAVGRL---- 221 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSLL 315 +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + SLL Sbjct: 222 ----FNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGSLL 274 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T GGR+ + + PL +I RL+ + F+ + L +++ LK D+ Sbjct: 275 WLLDKTKTAMGGRMLKQWMERPLIQKERIEERLEMVETFVNDYFLREDLKEKLKEVYDLE 334 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSLEK 433 R ++ G +D+ +R + IL L N L + +SL + Sbjct: 335 RLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPC----ESLTE 390 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + ++ P +DG ++DG + LD+ R + K IA L+ + + T IK+LKI Sbjct: 391 LLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGIKSLKI 450 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GY+IEVT ++ L + R+ +QT++N RF T EL + E I A Sbjct: 451 GYNRIFGYYIEVTKANLGAL-----PEGRYERKQTLANAERFITDELKEKETLILEAEEK 505 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 506 IVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTKREIF 565 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++RQ AL+ Sbjct: 566 IKDGRHPVVEKVL---NGKLYVPNDCIMPENMD-----VFLITGPNMSGKSTYMRQLALV 617 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ +S + Sbjct: 618 TVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERSLI 677 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 + DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L SL + N + Sbjct: 678 LFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEDSLDQLKNVHVSAI 737 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 738 EENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 784 >gi|228916407|ref|ZP_04079974.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228843210|gb|EEM88291.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 886 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 285/923 (30%), Positives = 495/923 (53%), Gaps = 95/923 (10%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R + IPMCGVP Sbjct: 1 MIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 61 YHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTIDE 115 Query: 148 TDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEKEL 204 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 116 KENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DSSF 174 Query: 205 SHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 S E L ETL A A P +H + N++ + ++ Sbjct: 175 SKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLIKAVGRL---- 221 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSLL 315 +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + SLL Sbjct: 222 ----FNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGSLL 274 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T GGR+ + + PL +I RL+ + F+ + L +++ LK D+ Sbjct: 275 WLLDKTKTAMGGRMLKQWMERPLIQKERIEERLEMVETFVNDYFLREDLKEKLKEVYDLE 334 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSLEK 433 R ++ G +D+ +R + IL L N L + +SL + Sbjct: 335 RLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPC----ESLTE 390 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + ++ P +DG ++DG + LD+ R + K IA L+ + + T IK+LKI Sbjct: 391 LLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGIKSLKI 450 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GY+IEVT ++ L + R+ +QT++N RF T EL + E I A Sbjct: 451 GYNRIFGYYIEVTKANLGAL-----PEGRYERKQTLANAERFITDELKEKETLILEAEEK 505 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 506 IVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTKREIF 565 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++RQ AL+ Sbjct: 566 IKDGRHPVVEKVL---NGKLYVPNDCIMPENMD-----VFLITGPNMSGKSTYMRQLALV 617 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ +S + Sbjct: 618 TVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERSLI 677 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 + DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L SL + N + Sbjct: 678 LFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEDSLDQLKNVHVSAI 737 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE------------- 840 + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 738 EENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLEGQEEIVIPKRVEV 797 Query: 841 ------------------------KLYHHNQKDMRLYYPEIQT-KESKNNLSKNDKLFVE 875 K+ + + + + E + K++K L + + Sbjct: 798 KAQEQEVIPEPIVVKEEPIEIEETKVDNEEESQLSFFGAEQSSKKQAKPALDAKETAVLT 857 Query: 876 KIKCLNLDEMSPLTALKTLYAVK 898 +IK ++L +M+PL A+ LY ++ Sbjct: 858 QIKKIDLLDMTPLEAMNELYRLQ 880 >gi|319941626|ref|ZP_08015950.1| DNA mismatch repair protein mutS [Sutterella wadsworthensis 3_1_45B] gi|319804856|gb|EFW01710.1| DNA mismatch repair protein mutS [Sutterella wadsworthensis 3_1_45B] Length = 898 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 285/900 (31%), Positives = 470/900 (52%), Gaps = 59/900 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL-GKDIPMC 84 TP MRQ+IE+K+ P++LV +RMGDFYE FF DA++A+R +GITLTKRGK G IPM Sbjct: 18 TPAMRQFIEVKNRYPNTLVLFRMGDFYETFFKDAVIANRLIGITLTKRGKLTDGTPIPMA 77 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G+P + + YI +L++ G + I EQ + G K ++ R V R+VTPGTLT+ L Sbjct: 78 GIPAVSLDTYIARLVRQGESVVIVEQ-----KGNTPGAKGMIEREVSRIVTPGTLTDTSL 132 Query: 145 LSPTDSNYLMAVARIRTEWA---IAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 L + L+A + + + A + W+ +S G F+ D + + RI P E++ E Sbjct: 133 LPEKSDSILLAASFPKKKTAPIGLVWLTLSNGDFRAEEVTPDSFEAALARIRPSELLVDE 192 Query: 202 ---KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 +E+ A + TL P+ FD S + + ++ +D + ++ Sbjct: 193 DMKREMRTAHPEIAVSTL-------PDWHFDAKRGASNLCATFGMSALDAWDVTNRTTVL 245 Query: 259 AAA-AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE-QSLLK 316 AAA A + YI++TQ+ P I + + + +D + R NLE+ +LS + E +L Sbjct: 246 AAANALLDYIRETQVDLVPFIEPLKLVEESQFIVLDPSTRRNLEVDESLSANGEGPTLFS 305 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D+ T G R + PL + R D++ + + +L + PDV R Sbjct: 306 VMDHCATAMGSREMRRWLREPLRSMEDTSARHDAVEAIMGDEPSREHFFAVLDALPDVER 365 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 SR+ +G P+++A +RD + + ++ L L D P +L + + L + + L Sbjct: 366 IASRVSLGTVRPRELASLRDTLPT-LSALGASLA-DSPLDLIAGIGRSMTLNSEIWERLE 423 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 L + P RDG + L E R RD + RI+ ++ + T I L++++N Sbjct: 424 QSLVAEPPGMLRDGDTIASSCSPELAELRHFRDDTSRILLEMEERERAATGINTLRVQYN 483 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 G++IEVT +A + + RQT+ N RF T EL +E+R ++ + Sbjct: 484 KVSGFYIEVTKGAADQVPM------HYQRRQTLKNCERFITPELKSIEDRALSSKERSAA 537 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E E ++ L + + L A++ A +D+ A A A E + RP + + ++ Sbjct: 538 LEKELYDKLVAETAKHTPELLAAAKAAAQLDVLCAFARHAAENRWHRPKLSSRPGLDIRK 597 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE ++ ++ ND L ++ ++ ++TGPNMGGKST++R ALIV++ Sbjct: 598 GRHPVVETAIEN-----YVPNDSRL-----EDGRRMLIVTGPNMGGKSTYMRSVALIVLL 647 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 GS+VPA+ A IG +D++ +R+G++D+LA GRSTFMVEM E A IL+ AT++S V++D Sbjct: 648 TWAGSFVPAAAAEIGPIDRMHTRIGASDDLAHGRSTFMVEMTEAAFILSHATDRSLVLMD 707 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGT+T DGLS+A A + L + R L ATH+ ELT L++ L+ N + + + Sbjct: 708 EIGRGTSTFDGLSLAAAIAQELVQKTRSFTLFATHYFELTRLAQELREVANVHVAAAQGS 767 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 GI+F H++ G A SYGI V +LAG+P V+ RA L E + ++ + E Sbjct: 768 AGIVFKHEIKEGPASKSYGIAVAQLAGVPAPVVRRARGFLAKLEAQANAQTSNLPDLFAE 827 Query: 857 ------------------IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +Q++ S +L++ + ++D M+P A++ LY + Sbjct: 828 PMLPAEDDAWEPDPLDAPLQSEPSPADLARQS--LTHDLMHADVDNMTPKAAMELLYKFR 885 >gi|116328119|ref|YP_797839.1| DNA mismatch repair protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331428|ref|YP_801146.1| DNA mismatch repair protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122280827|sp|Q04RT2|MUTS_LEPBJ RecName: Full=DNA mismatch repair protein mutS gi|122284089|sp|Q051T9|MUTS_LEPBL RecName: Full=DNA mismatch repair protein mutS gi|116120863|gb|ABJ78906.1| DNA mismatch repair ATPase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125117|gb|ABJ76388.1| DNA mismatch repair ATPase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 848 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 307/885 (34%), Positives = 472/885 (53%), Gaps = 69/885 (7%) Query: 17 DLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKH 76 DL E L +TPMM+Q++ IK PD+++F+RMGDFYE+F +DA +AS L I LTKR Sbjct: 15 DLAEAL--NTPMMKQFLTIKKDFPDTILFFRMGDFYEMFLEDAKIASSILDIALTKRQNA 72 Query: 77 LGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTP 136 +PMCG+P H+ ++YI +L+ G +IAICEQ P E G+K L+ R+VVR++TP Sbjct: 73 ----VPMCGIPYHSKDNYISRLLNAGKKIAICEQ-SKPEET---GSK-LMTRDVVRIITP 123 Query: 137 GTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKIST--SNHDRLISDIMRID 193 GT+ E+ LL+ +NYL + ++ A D STG +F ST ++ ++L++++ + Sbjct: 124 GTVIEENLLTGFQNNYLAVLHLKKSLIYFAMADFSTGELFYSSTPITSLEKLVAELEKFR 183 Query: 194 PREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS 253 P EI + ELS F+ L F D + + D I D F S Sbjct: 184 PSEICVPQSELS------FFQEL--------EYFRDKEFT--VLKDQPEIPEKDQFQILS 227 Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 + YI++T NK + P L +D NLE++ + + Sbjct: 228 RYLD-------EYIRETYRDNKLVLREPRILSSGKFLEMDRETILNLELVEN-GKEKNHT 279 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L ++ T G RL +RI P D + +R + + + I++ P L+ D Sbjct: 280 LYSIFNFCNTAKGKRLLKQRILFPECDPMVLYSRWEKQDILFK--IVLAPFIAALRDVGD 337 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R L+R + P+D I + I +GI + P +E+LK L + +E+ Sbjct: 338 IERILTRFRGNHSYPRDFRSILNSISTGIKLKKELEALSYP--FLIPLEELKVLSEFIEE 395 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L DDLP +G FL+ G LD+ R + K I SL+ + + T + LKI Sbjct: 396 RLHP--GDDLPVILGNGPFLKTGFSTRLDKAREAGFKGKDWILSLEAEEKKRTNLNTLKI 453 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 ++N +GYFIE++ + A KD ++ +QT+ RFTT +L ++E I A Sbjct: 454 RYNKIVGYFIEISRAQAEQAPKD------YLKKQTLVGSERFTTPKLEEIERTILEADEI 507 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 IE F + +++ S +L + S+ I +D I++ I + + RP + + Sbjct: 508 IQEIERAEFNRMVEEVLKYSSALLSFSEEIGDLDFQISVLIAKDKFGWIRPELSKDRSLN 567 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + D RHP+VE TL + F+ N L D + + +LTGPNM GKSTF+RQ AL Sbjct: 568 LVDSRHPVVEATLP--PGQEFVPNSVYL----DTQNQAIAVLTGPNMAGKSTFMRQIALN 621 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 I+ QMG++VPA A + IVDKLF+R+G+ DNL +G STF VEM ETA+ILN T S + Sbjct: 622 QILFQMGAFVPAKSARLPIVDKLFTRIGAGDNLTAGESTFYVEMKETANILNHYTEDSLI 681 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETN-RCRGLLATHFHELTDLSKSLKRFHNATLQV 792 + DE+GRGT+T DG+SIAW+ +EYL + + + + ATH+HELT+LS+ L N L+ Sbjct: 682 LFDEVGRGTSTYDGMSIAWSILEYLSSLSVKPKTIFATHYHELTELSR-LSGIFNLYLET 740 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 + + ++FL KV G A S+GI V K+AG+P ++ RA ++L E +K++R+ Sbjct: 741 LEKEDKVLFLRKVKVGKAKKSFGIYVAKIAGIPEPIVKRAAELLIDLE----SKKKEIRI 796 Query: 853 YYPE---IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 + ESKN S+ + E I L L+EM+P+ ALK L Sbjct: 797 QEAQPTLFIEPESKNLPSETE----ESILKLKLEEMTPMEALKKL 837 >gi|229031399|ref|ZP_04187400.1| DNA mismatch repair protein mutS [Bacillus cereus AH1271] gi|228729894|gb|EEL80873.1| DNA mismatch repair protein mutS [Bacillus cereus AH1271] Length = 886 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 273/828 (32%), Positives = 466/828 (56%), Gaps = 59/828 (7%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R IPMCGVP Sbjct: 1 MIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 61 HHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTIDE 115 Query: 148 TDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEKEL 204 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 116 KENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DSTF 174 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTV-----DTFGSFSQVEKTA 259 S E L ETL +IS Y + TT+ + SQ + Sbjct: 175 SKDELNKLTETL------------KMTIS------YEDATTIPEGLEHLVKNVSQAKLIK 216 Query: 260 AAAAI-SYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSL 314 A + +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + SL Sbjct: 217 AIGRLFNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGSL 273 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D + T GGR+ + + PL K+ RL+ + F+ + L +++ LK D+ Sbjct: 274 LWLLDKTKTAMGGRMLKQWMERPLIQKEKVEERLEMVETFVNDYFLREDLKEKLKEVYDL 333 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSLE 432 R ++ G +D+ +R + IL L N L + +SL Sbjct: 334 ERLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPC----ESLT 389 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 + L + ++ P +DG ++DG + LD+ R + K IA L+ + + T +K+LK Sbjct: 390 ELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGVKSLK 449 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 I +N GY+IEVT ++ + L + R+ +QT++N RF T EL + E I A Sbjct: 450 IGYNRIFGYYIEVTKANLAAL-----PEGRYERKQTLANAERFITDELKEKETLILEAEE 504 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 505 KIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTKREI 564 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++RQ AL Sbjct: 565 FIKDGRHPVVEKVL---NGKLYVPNDCIMPEKMD-----VFLITGPNMSGKSTYMRQLAL 616 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 + +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ +S Sbjct: 617 VTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERSL 676 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 ++ DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L +SL + N + Sbjct: 677 ILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLDQLKNVHVSA 736 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 737 IEENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLTQLE 784 >gi|229123283|ref|ZP_04252487.1| DNA mismatch repair protein mutS [Bacillus cereus 95/8201] gi|228660059|gb|EEL15695.1| DNA mismatch repair protein mutS [Bacillus cereus 95/8201] Length = 886 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 271/827 (32%), Positives = 463/827 (55%), Gaps = 57/827 (6%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R + IPMCGVP Sbjct: 1 MIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 61 YHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTIDE 115 Query: 148 TDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEKEL 204 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 116 KENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DSSF 174 Query: 205 SHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 S E L ETL A A P +H + N++ + ++ Sbjct: 175 SKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLIKAVGRL---- 221 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSLL 315 +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + SLL Sbjct: 222 ----FNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGSLL 274 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T GGR+ + + PL +I RL+ + F+ + L +++ LK D+ Sbjct: 275 WLLDKTKTAMGGRMLKQWMERPLIQKERIEERLEMVETFVNDYFLREDLKEKLKEVYDLE 334 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSLEK 433 R ++ G +D+ +R + IL L N L + +SL + Sbjct: 335 RLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPC----ESLTE 390 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + ++ P +DG ++DG + LD+ R + K IA L+ + + T IK+LKI Sbjct: 391 LLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGIKSLKI 450 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GY+IEVT ++ L + R+ +QT++N RF T EL + E I A Sbjct: 451 GYNRIFGYYIEVTKANLGAL-----PEGRYERKQTLANAERFITDELKEKETLILEAEEK 505 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 506 IVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTKREIF 565 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++RQ AL+ Sbjct: 566 IKDGRHPVVEKVL---NGKLYVPNDCIMPENMD-----VFLITGPNMSGKSTYMRQLALV 617 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ +S + Sbjct: 618 TVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERSLI 677 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 + DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L SL + N + Sbjct: 678 LFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEDSLNQLKNVHVSAI 737 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 738 EENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 784 >gi|229018965|ref|ZP_04175807.1| DNA mismatch repair protein mutS [Bacillus cereus AH1273] gi|229025208|ref|ZP_04181632.1| DNA mismatch repair protein mutS [Bacillus cereus AH1272] gi|228736141|gb|EEL86712.1| DNA mismatch repair protein mutS [Bacillus cereus AH1272] gi|228742293|gb|EEL92451.1| DNA mismatch repair protein mutS [Bacillus cereus AH1273] Length = 884 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 273/828 (32%), Positives = 465/828 (56%), Gaps = 59/828 (7%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R IPMCGVP Sbjct: 1 MIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 61 HHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTIDE 115 Query: 148 TDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEKEL 204 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 116 KENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DSTF 174 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTV-----DTFGSFSQVEKTA 259 S E L ETL +IS Y + TT+ + SQ + Sbjct: 175 SKDELNKLTETL------------KMTIS------YEDATTIPEGLEHLVKNVSQAKLIK 216 Query: 260 AAAAI-SYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSL 314 A + +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + SL Sbjct: 217 AIGRLFNYVIRTQ---KRSLDHLQPVEIYYTNQYMKIDVHSKRNLELTETLRTKEKTGSL 273 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D + T GGR+ + + PL K+ RL+ + F+ + L +++ LK D+ Sbjct: 274 LWLLDKTKTAMGGRMLKQWMERPLIQKEKVEERLEMVETFVNDYFLREDLKEKLKEVYDL 333 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSLE 432 R ++ G +D+ +R + IL L N L + +SL Sbjct: 334 ERLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPC----ESLA 389 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 + L + ++ P +DG ++DG + LD+ R + K IA L+ + + T +K+LK Sbjct: 390 ELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYISKNGKTWIAELEKRERDITGVKSLK 449 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 I +N GY+IEVT ++ + L + R+ +QT++N RF T EL + E I A Sbjct: 450 IGYNRIFGYYIEVTKANLAAL-----PEGRYERKQTLANAERFITDELKEKETLILEAEE 504 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 505 KIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTKREI 564 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++RQ AL Sbjct: 565 FIKDGRHPVVEKVL---NGKLYVPNDCIMPEKMD-----VFLITGPNMSGKSTYMRQLAL 616 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 + +M+Q+G +VPA A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ +S Sbjct: 617 VTVMSQIGCFVPAKEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERSL 676 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 ++ DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L +SL + N + Sbjct: 677 ILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLDQLKNVHVSA 736 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 737 IEENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 784 >gi|254373430|ref|ZP_04988918.1| DNA mismatch repair protein MutS [Francisella tularensis subsp. novicida GA99-3549] gi|151571156|gb|EDN36810.1| DNA mismatch repair protein MutS [Francisella novicida GA99-3549] Length = 855 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 302/898 (33%), Positives = 481/898 (53%), Gaps = 76/898 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +++ + TPM++QY++IKS D L+FYRMGDFYELFFDDA A+ L ITLT RGK G+ Sbjct: 13 QDISNHTPMIQQYLKIKSQYQDILLFYRMGDFYELFFDDAKKAAELLDITLTARGKSNGE 72 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H A YI K++K G IAICEQ P +K V R V R++TP T+ Sbjct: 73 SIPMAGVPYHAAEAYIAKIVKKGLSIAICEQTGDP-----NTSKGPVERQVTRIITPATV 127 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKIST-SNHDRLISDIMRIDPREI 197 +E+ L + L+++ ++ +A+ + G I+ + T ++ + L + ++++ P+EI Sbjct: 128 SEEAFLDSNQDSILVSIFEKNNKYYLAYTSYTQGKIYLVKTLTSLNELKNTVLKLSPQEI 187 Query: 198 IFSEKELSHAE------------YKSLFETLGNVAVAQPNVFFDHSISESRIADYYN--I 243 I + +EL+ Y S FE A N D +I+ + + Y N + Sbjct: 188 ITNSRELAQQNPFKKPIKALEEWYYSNFE-----AKKYINDSLDTNIANNILNLYKNDQL 242 Query: 244 TTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEIL 303 TT+ + S+ ++ I K + I Y + +D TL ID +R NLE Sbjct: 243 TTIGSILSY-----------LTNILKDTPRHITDISYEQEQD---TLNIDINSRINLE-- 286 Query: 304 RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINP 363 L + + SLL I T G RL ++P + + TR + IN ++N + Sbjct: 287 --LDNNSKSSLLSIIGKCKTSLGSRLLKRYFSNPTRNLNILATRHNIINSLVENQHFLK- 343 Query: 364 IQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAV 421 IQ +L D+ R +SR+ +G +PKD+ +RD + + L + + PE + + Sbjct: 344 IQDVLSYISDIERIISRVALGTVKPKDLVALRDSLEQLPILKKLLSEKNTPEITNINNRI 403 Query: 422 EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLK 481 +L +L L+K + ++ P RDGG +++G D LDE +S++D S + + Sbjct: 404 HQLDELVTLLDKAII----ENPPATIRDGGVIKEGFDKELDELKSIKDNSYDFLIKFEEL 459 Query: 482 YAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELI 541 ++T I LK+ +N GY+IE++ A + + +I RQT+ R+ T EL Sbjct: 460 QKQKTGISTLKVGYNRVHGYYIELSKQHADKIPTE------YIRRQTLKASERYITEELK 513 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 + E+++ ++ AL E ++ L +IE + + + IA ID+ A A + Sbjct: 514 NFEDKVLSSKEKALAREKLIYDTLLKKVIEYYKQIQETAASIAEIDVLANFAERAIKLKL 573 Query: 602 CRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 +P +N +K+ RH +E + + PFI ND LS K++ L ++TGPNMG Sbjct: 574 SQPKFNNLAKLELKEVRHLAIEHNIDE----PFIPNDTLLS----KDTNTLQIITGPNMG 625 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKST++RQ A ++ +A +GS+VPASYA I +D +++R+G++D+++SGRSTFMVEM ETA Sbjct: 626 GKSTYMRQVAQLIFLAYIGSFVPASYADICDIDTIYTRIGASDDISSGRSTFMVEMTETA 685 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS 781 ILN A+ +S VI+DEIGRGT+T DGL++A A E + L ATH+ ELT+L+K Sbjct: 686 YILNNASAKSLVIMDEIGRGTSTFDGLALAKACAEKFAQIG-AFTLFATHYFELTELAKQ 744 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 N + + + I F+HK + G A SYGIQV KLAG+ V+ A L EK Sbjct: 745 YPNVCNIHFEAKEYKDNIYFMHKAVTGAAKKSYGIQVAKLAGISQDVLESAKQNLYNLEK 804 Query: 842 LYHHNQKDMRLYYP-EIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 H L P +IQ + ++N +K+ ++++ ++PL AL L+ +K Sbjct: 805 KQH-------LAEPTQIQAQFELEPTTQNP--LQQKLDAIDINTITPLEALNILFELK 853 >gi|198283554|ref|YP_002219875.1| DNA mismatch repair protein MutS [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667666|ref|YP_002426179.1| DNA mismatch repair protein MutS [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248075|gb|ACH83668.1| DNA mismatch repair protein MutS [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519879|gb|ACK80465.1| DNA mismatch repair protein MutS [Acidithiobacillus ferrooxidans ATCC 23270] Length = 870 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 315/891 (35%), Positives = 462/891 (51%), Gaps = 69/891 (7%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 ++ TPMMRQY E+K PD+L+FYRMGDFYELFFDDA A++ LGITLT RG+ G+ I Sbjct: 27 IRQHTPMMRQYFELKEQCPDALLFYRMGDFYELFFDDAEKAAQLLGITLTSRGQSAGRAI 86 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PM GVPV + + Y+ KL+++G R+AI EQI P AK V R +VR++TPGT+ + Sbjct: 87 PMAGVPVQSVDGYLAKLVRLGERVAIGEQIGDPATAK-----GPVERAIVRIITPGTIID 141 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPR-EIIFS 200 LL L+A+ T +AW+D + G ++ D ++DI+ P EII Sbjct: 142 GALLDGGQEPLLLALCPEGTRCGMAWLDAAGGHLRVREVA-DTAVADILARRPAAEIIAP 200 Query: 201 E----------KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG 250 E K+L E K+ F+T AV + +F + D+ Sbjct: 201 EDTPVPAGIDPKKLQFLE-KTGFQTRRCDAVLE--RYFGERLVGFGCNDWPLALRAAA-- 255 Query: 251 SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR 310 + +T +++S I++ +PER + L +D+ A LE++ +L G+ Sbjct: 256 ALLNYAETRLRSSLSQIQRI---------HPERAE--EELHLDATALRALEVVESLQGNG 304 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQN--PILINPIQKIL 368 +LL + + T G RL + PL + R + + Q P+ I QK L Sbjct: 305 P-TLLTLLQKTQTTMGARLLRRWLLRPLRQGPVVAARQEVVAALTQGSGPVAI---QKAL 360 Query: 369 KSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP 428 D R L+R+ + P+D+A +R +++ + L L ++ L E+ L Sbjct: 361 HGIADAERILTRIALNNASPRDLAQLRSTLQA-LPGLRLVIQETGNPAL-DVFEQRITLF 418 Query: 429 QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 +L L L D P +RDGG++R G D LD + L + ++ L+ + + T I Sbjct: 419 VTLRTLLEKALVDTPPMTQRDGGYIRAGHDGELDRLQQLSQNLQEVLRDLEQQERQRTGI 478 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 LKI+ N G++IE+ S + D + RQT N R+ L +E++ Sbjct: 479 AQLKIQFNRVHGFYIEIARSYQGPIPDD------YRRRQTTKNAERYINDALKAIEDQAL 532 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 +A + AL E F L I + +L +A +A +D LA A ++C P Sbjct: 533 SAESLALSRERLLFTQLLQTISPEVPALQDAMAAVAELDALSTLAERAVTLHWCAPHFVT 592 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 + DGRHP+VE Q F+ ND D ++ L+TGPNMGGKST++R Sbjct: 593 EPVLHIHDGRHPVVEA----QIGSNFVPNDLDFD-----EERRMLLITGPNMGGKSTYMR 643 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q ALIV++A +GS+VPA A IG VD++F+R+G+AD+LA GRSTFMVEM ETA IL+ AT Sbjct: 644 QTALIVLLAHIGSWVPAREAVIGPVDQIFTRIGAADDLAGGRSTFMVEMSETARILHLAT 703 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA 788 QS VILDEIGRGTAT DGLSIAWAT E L E R L ATH+ ELT+L L NA Sbjct: 704 AQSLVILDEIGRGTATHDGLSIAWATAEALAERG-ARTLFATHYFELTEL--DLPGLRNA 760 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 L ++ ++FLH+V G A SYG+ V +LAG+P+ V+ RA L+ Q Sbjct: 761 HLDALTQDDQVVFLHRVESGPAAQSYGLAVARLAGVPDPVVQRARQRLR---------QL 811 Query: 849 DMRLYYPEIQTKESKNNL-SKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + T ++ +L V ++ + D++SP AL +YA+K Sbjct: 812 EESSRSSLSHTAPAQLSLFQAAPHPAVYRLSQVEPDQLSPRQALDLVYALK 862 >gi|257051545|ref|YP_003129378.1| DNA mismatch repair protein MutS [Halorhabdus utahensis DSM 12940] gi|256690308|gb|ACV10645.1| DNA mismatch repair protein MutS [Halorhabdus utahensis DSM 12940] Length = 865 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 293/908 (32%), Positives = 482/908 (53%), Gaps = 67/908 (7%) Query: 1 MTKEFSSPQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDAL 60 M P K+ + DL TPM+RQY+E+ D+LV ++ GDFY+ F + A Sbjct: 1 MDAALGPPAKMTDRREDL-------TPMLRQYVELTERYDDALVLFQSGDFYKGFCEAAE 53 Query: 61 LASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR 120 + +R +TLT+R G M GVP+ A YI+KL+ G+R+AI +Q+E P E Sbjct: 54 VLARICEVTLTEREDSTGT-YAMTGVPIDNAESYIEKLLDAGYRVAIADQVEDPDEVS-- 110 Query: 121 GNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIF-KIST 179 +V R V R++TPGTLTED+LL ++NY+ A+A + +A +D+STG F ST Sbjct: 111 ---GVVERAVTRIITPGTLTEDELLGGAENNYVAALAADDGRFGVAVLDVSTGDFYATST 167 Query: 180 SNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIAD 239 + + + ++ R P E I + +LF+ V+ + F +E R+ + Sbjct: 168 DDRETVRDELGRFSPAEGILG------PDVPNLFDGACTVSPVEGTYFATDRAAE-RVGE 220 Query: 240 YYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPE---REDIQSTLFIDSAA 296 Y+ T D + + E A A ++Y + + + Y R D ++ + +D+ A Sbjct: 221 YFG--TPDRLLA-TDAEVRACGALLAYAEYARGGEAGRLDYLNHLTRYDPRAYMVLDAVA 277 Query: 297 RSNLEIL--RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFF 354 +LEI R+++G + +L+ ID + + G R E + PL D +I R +++ Sbjct: 278 LESLEIFERRSVTGGADLTLVDVIDETASALGRRRLTEWLRRPLIDRDRIEARHAAVDAL 337 Query: 355 IQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG------IRSGINILNLF 408 + + ++L D+ R +SR+ R + +D+ ++D I++ ++ ++ Sbjct: 338 VSELQTRERLHELLSDVYDLERLISRVSRSRADARDLRSLKDTLDVIPEIKAALDGIDAP 397 Query: 409 LKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLR 468 L DL + L ++ ++ L + ++ D PT +GG + +G D LDE R+ Sbjct: 398 LLTDLRDRL-DEMDDVRGL-------IDDAIAADPPTEITEGGIISEGYDDRLDELRATE 449 Query: 469 DQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQT 528 + K I L+ E T I +LK+ HN GY+IEVT ++ + +D + RQT Sbjct: 450 REGKEWITDLEESERERTGIDSLKVGHNAVHGYYIEVTDANVDRVPED------YQRRQT 503 Query: 529 MSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDI 588 + N R+ T EL + E+ I A A +E E F + + + +SE + + +A +D+ Sbjct: 504 LKNAERYYTPELKEREDEILRAEGQADDLEYELFVEVRDDVAAESERVQAVADAVANLDV 563 Query: 589 SIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKN 648 + A +A E++YCRP + I GRHP+VE+T F+ ND L + Sbjct: 564 LVGFATVAAERDYCRPSVGGDGIDIEG-GRHPVVERT-----EDAFVPNDTHLD-----D 612 Query: 649 SGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLAS 708 L ++TGPNM GKST++RQ ALI I+AQ+GS+VPA A + IVD++F+RVG++D++A Sbjct: 613 DACLAVITGPNMSGKSTYMRQVALISILAQVGSFVPAESADLRIVDRVFTRVGASDDIAG 672 Query: 709 GRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLL 768 GRSTFMVEM E A+IL AT S V+LDE+GRGT+T DGL+IA A E++H+ L Sbjct: 673 GRSTFMVEMSELATILEGATANSLVLLDEVGRGTSTTDGLAIAQAVTEFIHDEVGATTLF 732 Query: 769 ATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTV 828 ATH HELT+++ L N + + E + F + + G A SYG++V +AG+P+TV Sbjct: 733 ATHHHELTEVAADLNGAVNRHFRTEQAGEEVSFPYDIATGPAAASYGVEVAGVAGVPDTV 792 Query: 829 ISRAYDIL--KTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMS 886 + R+ ++L T + + D +T E + ++D V +++ L++ EM+ Sbjct: 793 VGRSRELLGDSTPDGREPGQEPDRTATERGSETPEEPD---RDD--VVAELRSLSVAEMT 847 Query: 887 PLTALKTL 894 P+ AL TL Sbjct: 848 PIQALNTL 855 >gi|228940847|ref|ZP_04103407.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973768|ref|ZP_04134345.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980323|ref|ZP_04140634.1| DNA mismatch repair protein mutS [Bacillus thuringiensis Bt407] gi|228779428|gb|EEM27684.1| DNA mismatch repair protein mutS [Bacillus thuringiensis Bt407] gi|228785920|gb|EEM33922.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818861|gb|EEM64926.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 884 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 270/827 (32%), Positives = 464/827 (56%), Gaps = 57/827 (6%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R IPMCGVP Sbjct: 1 MIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 61 HHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTIDE 115 Query: 148 TDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEKEL 204 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 116 KENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DSSF 174 Query: 205 SHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 S E L ETL A A P +H + N++ + ++ Sbjct: 175 SKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLIKAIGRL---- 221 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSLL 315 +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + SLL Sbjct: 222 ----FNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGSLL 274 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T GGR+ + + PL K+ RL+ + F+ + L +++ LK D+ Sbjct: 275 WLLDKTKTAMGGRMLKQWMERPLIQKEKVEERLEMVETFVNDYFLREDLKEKLKEVYDLE 334 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSLEK 433 R ++ G +D+ +R + IL L N L + +SL + Sbjct: 335 RLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPC----ESLTE 390 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + ++ P +DG ++DG + LD+ R + K IA L+ + + T +K+LKI Sbjct: 391 LLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGVKSLKI 450 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GY+IEVT ++ + L + R+ +QT++N RF T EL + E I A Sbjct: 451 GYNRIFGYYIEVTKANLAAL-----PEGRYERKQTLANAERFITDELKEKETLILEAEEK 505 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 506 IVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTKREIF 565 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++RQ AL+ Sbjct: 566 IKDGRHPVVEKVL---NGKLYVPNDCIMPEKMD-----VFLITGPNMSGKSTYMRQLALV 617 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ +S + Sbjct: 618 TVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERSLI 677 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 + DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L +SL + N + Sbjct: 678 LFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLDQLKNVHVSAI 737 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 738 EENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 784 >gi|229104333|ref|ZP_04235002.1| DNA mismatch repair protein mutS [Bacillus cereus Rock3-28] gi|228679031|gb|EEL33239.1| DNA mismatch repair protein mutS [Bacillus cereus Rock3-28] Length = 884 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 273/828 (32%), Positives = 466/828 (56%), Gaps = 59/828 (7%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R IPMCGVP Sbjct: 1 MIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 61 HHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTIDE 115 Query: 148 TDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEKEL 204 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 116 KENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DSTF 174 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTV-----DTFGSFSQVEKTA 259 S E L ETL +IS Y + TT+ + SQ + Sbjct: 175 SKDELNKLTETL------------KMTIS------YEDATTIPEGLEHLVKNVSQAKLIK 216 Query: 260 AAAAI-SYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSL 314 A + +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + SL Sbjct: 217 AIGRLFNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGSL 273 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D + T GGR+ + + PL K+ RL+ + F+ + L +++ LK D+ Sbjct: 274 LWLLDKTKTAMGGRMLKQWMERPLIQKEKVEERLEMVETFVNDYFLREDLKEKLKEVYDL 333 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSLE 432 R ++ G +D+ +R + IL L N L + +SL Sbjct: 334 ERLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPC----ESLT 389 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 + L + ++ P +DG ++DG + LD+ R + K IA L+ + + T +K+LK Sbjct: 390 ELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGVKSLK 449 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 I +N GY+IEVT ++ + L + R+ +QT++N RF T EL + E I A Sbjct: 450 IGYNRIFGYYIEVTKANLAAL-----PEGRYERKQTLANAERFITDELKEKETLILEAEE 504 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 505 KIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTKREI 564 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++RQ AL Sbjct: 565 FIKDGRHPVVEKVL---NGKLYVPNDCIMPEKMD-----VFLITGPNMSGKSTYMRQLAL 616 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 + +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ +S Sbjct: 617 VTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERSL 676 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 ++ DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L +SL + N + Sbjct: 677 ILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLDQLKNVHVSA 736 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 737 IEENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 784 >gi|229098238|ref|ZP_04229185.1| DNA mismatch repair protein mutS [Bacillus cereus Rock3-29] gi|229117255|ref|ZP_04246633.1| DNA mismatch repair protein mutS [Bacillus cereus Rock1-3] gi|228666155|gb|EEL21619.1| DNA mismatch repair protein mutS [Bacillus cereus Rock1-3] gi|228685136|gb|EEL39067.1| DNA mismatch repair protein mutS [Bacillus cereus Rock3-29] Length = 884 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 273/828 (32%), Positives = 466/828 (56%), Gaps = 59/828 (7%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R IPMCGVP Sbjct: 1 MIQQYLKVKADYEDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 61 HHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTIDE 115 Query: 148 TDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEKEL 204 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 116 KENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DSTF 174 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTV-----DTFGSFSQVEKTA 259 S E L ETL +IS Y + TT+ + SQ + Sbjct: 175 SKDELNKLTETL------------KMTIS------YEDATTIPEGLEHLVKNVSQAKLLK 216 Query: 260 AAAAI-SYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSL 314 A + +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + SL Sbjct: 217 AIGRLFNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGSL 273 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D + T GGR+ + + PL K+ RL+ + F+ + L +++ LK D+ Sbjct: 274 LWLLDKTKTAMGGRMLKQWMERPLIQKEKVEERLEMVETFVNDYFLREDLKEKLKEVYDL 333 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSLE 432 R ++ G +D+ +R + IL L N L + +SL Sbjct: 334 ERLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPC----ESLT 389 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 + L + ++ P +DG ++DG + LD+ R + K IA L+ + + T +K+LK Sbjct: 390 ELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGVKSLK 449 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 I +N GY+IEVT ++ + L + R+ +QT++N RF T EL + E I A Sbjct: 450 IGYNRIFGYYIEVTKANLAAL-----PEGRYERKQTLANAERFITDELKEKETLILEAEE 504 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 505 KIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTKREI 564 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++RQ AL Sbjct: 565 FIKDGRHPVVEKVL---NGKLYVPNDCIMPEKMD-----VFLITGPNMSGKSTYMRQLAL 616 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 + +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ +S Sbjct: 617 VTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERSL 676 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 ++ DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L +SL + N + Sbjct: 677 ILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLDQLKNVHVSA 736 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 737 IEENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 784 >gi|65321095|ref|ZP_00394054.1| COG0249: Mismatch repair ATPase (MutS family) [Bacillus anthracis str. A2012] gi|229186008|ref|ZP_04313178.1| DNA mismatch repair protein mutS [Bacillus cereus BGSC 6E1] gi|228597427|gb|EEK55077.1| DNA mismatch repair protein mutS [Bacillus cereus BGSC 6E1] Length = 886 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 271/827 (32%), Positives = 463/827 (55%), Gaps = 57/827 (6%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R + IPMCGVP Sbjct: 1 MIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 61 YHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTIDE 115 Query: 148 TDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEKEL 204 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 116 KENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DSSF 174 Query: 205 SHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 S E L ETL A A P +H + N++ + ++ Sbjct: 175 SKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLIKAVGRL---- 221 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSLL 315 +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + SLL Sbjct: 222 ----FNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGSLL 274 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T GGR+ + + PL +I RL+ + F+ + L +++ LK D+ Sbjct: 275 WLLDKTKTAMGGRMLKQWMERPLIQKERIEERLEMVETFVNDYFLREDLKEKLKEVYDLE 334 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSLEK 433 R ++ G +D+ +R + IL L N L + +SL + Sbjct: 335 RLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPC----ESLTE 390 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + ++ P +DG ++DG + LD+ R + K IA L+ + + T IK+LKI Sbjct: 391 LLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGIKSLKI 450 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GY+IEVT ++ L + R+ +QT++N RF T EL + E I A Sbjct: 451 GYNRIFGYYIEVTKANLGAL-----PEGRYERKQTLANAERFITDELKEKETLILEAEEK 505 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 506 IVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTKREIF 565 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++RQ AL+ Sbjct: 566 IKDGRHPVVEKVL---NGKLYVPNDCIMPENMD-----VFLITGPNMSGKSTYMRQLALV 617 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ +S + Sbjct: 618 TVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERSLI 677 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 + DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L SL + N + Sbjct: 678 LFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEDSLDQLKNVHVSAI 737 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 738 EENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 784 >gi|228947490|ref|ZP_04109780.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228812010|gb|EEM58341.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 886 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 271/827 (32%), Positives = 463/827 (55%), Gaps = 57/827 (6%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R + IPMCGVP Sbjct: 1 MIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGGSERIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 61 YHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTIDE 115 Query: 148 TDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEKEL 204 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 116 KENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DSSF 174 Query: 205 SHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 S E L ETL A A P +H + N++ + ++ Sbjct: 175 SKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLIKAVGRL---- 221 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSLL 315 +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + SLL Sbjct: 222 ----FNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGSLL 274 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T GGR+ + + PL +I RL+ + F+ + L +++ LK D+ Sbjct: 275 WLLDKTKTAMGGRMLKQWMERPLIQKERIEERLEMVETFVNDYFLREDLKEKLKEVYDLE 334 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSLEK 433 R ++ G +D+ +R + IL L N L + +SL + Sbjct: 335 RLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPC----ESLTE 390 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + ++ P +DG ++DG + LD+ R + K IA L+ + + T IK+LKI Sbjct: 391 LLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGIKSLKI 450 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GY+IEVT ++ L + R+ +QT++N RF T EL + E I A Sbjct: 451 GYNRIFGYYIEVTKANLGAL-----PEGRYERKQTLANAERFITDELKEKETLILEAEEK 505 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 506 IVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTKREIF 565 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++RQ AL+ Sbjct: 566 IKDGRHPVVEKVL---NGKLYVPNDCIMPENMD-----VFLITGPNMSGKSTYMRQLALV 617 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ +S + Sbjct: 618 TVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERSLI 677 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 + DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L SL + N + Sbjct: 678 LFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEDSLDQLKNVHVSAI 737 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 738 EENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 784 >gi|229140410|ref|ZP_04268965.1| DNA mismatch repair protein mutS [Bacillus cereus BDRD-ST26] gi|228642971|gb|EEK99247.1| DNA mismatch repair protein mutS [Bacillus cereus BDRD-ST26] Length = 886 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 271/827 (32%), Positives = 465/827 (56%), Gaps = 57/827 (6%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R + IPMCGVP Sbjct: 1 MIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 61 YHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTIDE 115 Query: 148 TDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEKEL 204 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 116 KENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DSSF 174 Query: 205 SHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 S E L ETL A A P +H + N++ + ++ Sbjct: 175 SKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLIKAVGRL---- 221 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSLL 315 +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + SLL Sbjct: 222 ----FNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGSLL 274 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T GGR+ + + PL +I RL+ + F+ + L +++ LK D+ Sbjct: 275 WLLDKTKTAMGGRMLKQWMERPLIQKERIEERLEMVETFVNDYFLREDLKEKLKEVYDLE 334 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSLEK 433 R ++ G +D+ +R + IL L N L + +SL + Sbjct: 335 RLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPC----ESLTE 390 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + ++ P +DG ++DG + LD+ R + K IA L+ + + T IK+LKI Sbjct: 391 LLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGIKSLKI 450 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N GY+IEVT ++ L + R+ +QT++N RF T EL + E I A Sbjct: 451 GYNRIFGYYIEVTKANLGAL-----PEGRYERKQTLANAERFITDELKEKETLILEAEEK 505 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 506 IVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTKREIF 565 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +KDGRHP+VEK L + K ++ NDC + P + + ++L+TGPNM GKST++RQ AL+ Sbjct: 566 IKDGRHPVVEKVL---NGKLYVPNDCIM--PENMD---VFLITGPNMSGKSTYMRQLALV 617 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ +S + Sbjct: 618 TVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERSLI 677 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 + DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L SL + N + Sbjct: 678 LFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEDSLDQLKNVHVSAI 737 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 738 EENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLITRAKEVLAQLE 784 >gi|300172901|ref|YP_003772066.1| DNA mismatch repair protein MutS [Leuconostoc gasicomitatum LMG 18811] gi|299887279|emb|CBL91247.1| DNA mismatch repair protein MutS [Leuconostoc gasicomitatum LMG 18811] Length = 864 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 313/899 (34%), Positives = 467/899 (51%), Gaps = 69/899 (7%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 + TPMM QY EIKS PD+ VFYR+GDFYELF +DA+ ++ L +TLT R K+ +PM Sbjct: 5 ADTPMMVQYHEIKSQYPDAFVFYRLGDFYELFEEDAIQGAKLLELTLTARNKNSKNPVPM 64 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G+P H A +YI L+ GH++AI EQ+E P A +V+R+VV+L+TPGT D Sbjct: 65 AGIPHHAAKNYIDILVDQGHKVAIVEQMEDPAVAH-----GMVKRDVVQLITPGTKMIDG 119 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIM----RIDPREIIF 199 + S +NYL AV W +A+ID+STG K +T SD+M ++ +E++ Sbjct: 120 VGSDKQNNYLAAVLPGDGTWVLAYIDLSTGELKATTMYR---FSDVMDELSSLEVKEVVL 176 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 + + + L LG + IS I + T E A Sbjct: 177 RKND-EQTTRQGLATQLGERGLV---------ISTQTITGENATVSFLTQPLIKSDEVAA 226 Query: 260 AAAAISYIKKTQMVN----KPTIGYPEREDIQSTLFIDSAARSNLEILR-TLSGSREQSL 314 + ++YI TQ N P + Y ER + L + R+NL+++ T + R SL Sbjct: 227 TSMLLNYIFDTQRRNLDHIVPAMSY-ER---LTYLKFNQDTRTNLDLIENTRTKKRAGSL 282 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L ID + T GGRL + + PL D I +RLD + F + +Q LKS D+ Sbjct: 283 LGLIDETHTAMGGRLLKQWVLKPLRDQHDIESRLDLVQAFQDDFFTRGALQDHLKSVYDL 342 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL-FLKNDLPEELRGAVEKLKKLPQSLEK 433 R +R +G ++I ++ RS + I + + +D L KL + L Sbjct: 343 ERLSARAAMGTMNAREIVQLK---RSLLTIPGIKAVLSDTTSILNVTGNKLDDMV-DLAS 398 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + + DD P R+G + DG D +D R + +++ +A L+ T I +LK+ Sbjct: 399 LIEEAVVDDPPISVREGDIINDGFDEKIDNYRRVLHDNQQWLAQLEADERAATGIHSLKV 458 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 +N N GYFIEVT A+++K LE+ +R+ QT++N RF T EL + E I A Sbjct: 459 GYNKNFGYFIEVTK--ANIVK--LEA-NRYERLQTLTNAERFVTPELKEHERLIIEAQAK 513 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 E E F + + + +Q IA +D+ AL+ +A + + RPI + + + Sbjct: 514 RTQREYELFVTVRERVKANISRVQKLAQQIAHLDVLAALSDVADNRRFIRPIFTDHNSIM 573 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +K GRHP+VE L S F+AND L + + L+TGPNM GKST++R+ ALI Sbjct: 574 IKQGRHPVVESLL---SVGEFVANDVLLD-----ETTNMQLITGPNMAGKSTYMRELALI 625 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 VI+AQMGS+VPA Y + I D++F+R+G+ D++A G+STFMVEM E L +AT S V Sbjct: 626 VILAQMGSFVPAEYVELPIFDQIFTRIGANDDMAMGQSTFMVEMAEANHALQEATAHSLV 685 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL-QV 792 + DE+GRGTAT DG+++A A IE+L + L +TH+HELT L+ N + V Sbjct: 686 LFDELGRGTATYDGMALAQAIIEFLDAHIHAKTLFSTHYHELTVLADQHASIENVHVGAV 745 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK----LYHHNQ- 847 D + FLH++ G AD SYGI V LAGLP+ +I+ A IL E + NQ Sbjct: 746 EDDTGHLHFLHQIQKGPADKSYGIHVAALAGLPDELITNATKILTALENKETVITTQNQP 805 Query: 848 ------------KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 + + L+ ++ KE++ L D + +K +D M+ L ALK L Sbjct: 806 ADTMEPERSGLSEQVALFNVDVADKETQIILDALDDFDI--LKMTPVDAMNALNALKQL 862 >gi|15675890|ref|NP_270064.1| DNA mismatch repair protein MutS [Streptococcus pyogenes M1 GAS] gi|71911618|ref|YP_283168.1| DNA mismatch repair protein MutS [Streptococcus pyogenes MGAS5005] gi|18202683|sp|Q99XL8|MUTS_STRP1 RecName: Full=DNA mismatch repair protein mutS gi|13623126|gb|AAK34785.1| putative DNA mismatch repair protein [Streptococcus pyogenes M1 GAS] gi|71854400|gb|AAZ52423.1| DNA mismatch repair protein [Streptococcus pyogenes MGAS5005] Length = 851 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 286/891 (32%), Positives = 473/891 (53%), Gaps = 67/891 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYPDAFLLFRMGDFYELFYEDAVKAAQLLEIGLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI++G+++A+ EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPHHSAQQYIDVLIELGYKVAVAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSAK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204 + +N+L+AV + +A++D+STG F ++ ++ + S+I + +E++ +L Sbjct: 121 PDSANNFLVAVDFDGCRYGLAYMDVSTGEFCVTDLADFTSVRSEIQNLKAKEVLLG-FDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E L + + + + V+ D S+ + G + VE TAA + Sbjct: 180 SEEEQTILVKQMNLLLSYEETVYEDKSLID---------------GQLTTVELTAAGKLL 224 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT 323 Y+ KTQM + +I+ L + A +S+L+++ +++ SL +D + T Sbjct: 225 QYVHKTQMRELSHLQALVHYEIKDYLQMSYATKSSLDLVENARTNKKHGSLYWLLDETKT 284 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL I PL I R + I F+ I + LK D+ R SR+ Sbjct: 285 AMGMRLLRSWIDRPLVSKEAILERQEIIQVFLNAFIERTDLSNSLKGVYDIERLSSRVSF 344 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 G+ PKD+ + + I + D P + V + LP+ LE + + + D Sbjct: 345 GKANPKDLLQLGHTLAQVPYIKAILESFDSPC-VDKLVNDIDSLPE-LEYLIRTAIDPDA 402 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P +G +R+G D LD R + + IA ++ K + + I NLKI +N GY+ Sbjct: 403 PATISEGSIIRNGFDERLDHYRKVMREGTGWIADIEAKERQASGINNLKIDYNKKDGYYF 462 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 VT+S+ S++ + F + T+ N R+ T EL +E ++ A + +E + F Sbjct: 463 HVTNSNLSLVP------EHFFRKATLKNSERYGTAELAKIEGQMLEAREESSSLEYDIFM 516 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 + + L ++++A +D+ +LA++A+ +Y RP +++ +++GRH +VE Sbjct: 517 CIRAQVETYINRLQKLAKILATVDVLQSLAVVAETNHYIRPQFNDNHVITIQEGRHAVVE 576 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 K + Q +I N S D+ + + L+TGPNM GKST++RQ AL VIMAQMGS+V Sbjct: 577 KVMGVQE---YIPN----SISFDQQTS-IQLITGPNMSGKSTYMRQLALTVIMAQMGSFV 628 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 A + + + D +F+R+G+AD+L SG+STFMVEM+E + +A++ S ++ DE+GRGTA Sbjct: 629 AADHVDLPLFDAIFTRIGAADDLISGQSTFMVEMMEANQAIKRASDNSLILFDELGRGTA 688 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DG+++A A IEY+H+ + + ATH+HELTDLS +L N + + + + FLH Sbjct: 689 TYDGMALAQAIIEYIHDRVGAKTIFATHYHELTDLSTNLTSLVNVHVATLEKDGDVTFLH 748 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN----------------Q 847 K+ G AD SYGI V K+AGLP +++ RA ++L E Q Sbjct: 749 KIAEGPADKSYGIHVAKIAGLPKSLLKRADEVLTRLETQSRSTEIISVPSQVESSSAVRQ 808 Query: 848 KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L+ E + E + L E I +N M+PL A+ TLY +K Sbjct: 809 GQLSLFGDEEKAHEIRQAL--------EVIDVMN---MTPLQAMTTLYELK 848 >gi|187918651|ref|YP_001884217.1| DNA mismatch repair protein MutS [Borrelia hermsii DAH] gi|238689299|sp|B2S1E1|MUTS_BORHD RecName: Full=DNA mismatch repair protein mutS gi|119861499|gb|AAX17294.1| DNA mismatch repair protein MutS [Borrelia hermsii DAH] Length = 861 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 295/836 (35%), Positives = 465/836 (55%), Gaps = 68/836 (8%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TPMMRQY+ IK+ + D+++F+R+G FYE+FFDDAL S+ LG+TLTKR +DIP Sbjct: 3 KDVTPMMRQYLSIKNKHKDAILFFRVGSFYEMFFDDALEGSKLLGLTLTKR-----EDIP 57 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP HT+ YI+KLI + ++AICEQ ++ +G + R VV +++PG + ++ Sbjct: 58 MCGVPCHTSKEYIKKLILLDRKVAICEQ--GGVQTDPKGP---LEREVVEVISPGVVVDE 112 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDIST---GIFKISTSNHDRLISDIMRIDPREIIF 199 L +NYL+A++ + ++ ++ID+ST GI S ++L DI + P+EII Sbjct: 113 DFLQDDVNNYLVAISDYKDYYSFSYIDLSTSRLGIILYEGSFLEKLRRDIEKYSPKEIIV 172 Query: 200 SEK-ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 SE + E +L L N P+ D I+ + D++N+ ++ FG F + E Sbjct: 173 SESFYYKYLEKLALDRFLVNKV---PHWHLDKDIAIKSLKDHFNVLSLSAFG-FKEDEPY 228 Query: 259 AAAA--AISYIK---KTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQ 312 ++ I YIK K ++N TI Y + +F+D + NLE+++ + + Sbjct: 229 YISSFLIIDYIKNNLKNLLINIDTI-YINSD--SEYMFLDDVTQINLELVKNNNDLTARY 285 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 SL ++ T G RL E I +PL D IN RLD + F N L +++IL + Sbjct: 286 SLYSVLNDCKTPMGKRLLREYILNPLLDIAAINNRLDHVEFLNNNVNLSIKLREILSNVW 345 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI---LNLFLKN----DLPEE--LRGAVEK 423 D+ R +SRL++ + KD IR+ + + ++ LN + N D+ +E +RG Sbjct: 346 DIERIISRLQMRKYAKKDFLFIRETLIAFFSVKRLLNEYSFNYWIFDVNDEGDIRGI--- 402 Query: 424 LKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 SL S D+L ++ G ++ +D R L++ + + + Sbjct: 403 -----YSLIDCAISNEQDEL---------IKQGYNSEIDRLRELKNNASKYVDDYLDFER 448 Query: 484 EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDL 543 +KI +LKIK N G F EVT S + FI QT++++ R+ T +LI+L Sbjct: 449 NFSKINSLKIKRINVRGLFFEVTKSYYG------QVPSHFIESQTLNSVKRYKTNKLIEL 502 Query: 544 ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCR 603 E I +A ++ L +E E F+ ++ +++ S + ++ A ID+ A LAK+ Y R Sbjct: 503 ERDINDAEDNLLSLEQEIFDEIALKVVKYSTVIKKVAEFCAYIDVVSNFAYLAKKNEYVR 562 Query: 604 PIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 P + N+ I++ RHP+VE +K + F N + L+TGPNM GK Sbjct: 563 PTLTNNKEIILECARHPVVEHYMK--GVEAFTRNSVRID-----GEKYFCLITGPNMAGK 615 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 ST+LRQ AL+V+M +GS+VPA+ A IGI DK+F R+G++DN++ G STF+VEM ETA+I Sbjct: 616 STYLRQTALVVLMGHIGSFVPANKAIIGITDKIFCRIGASDNISKGESTFLVEMNETANI 675 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLK 783 L AT S +I+DE+GRGT+T DGL+IA + +EY+ E + R L ATHFHEL+ ++ Sbjct: 676 LRNATQDSLIIMDEVGRGTSTNDGLAIACSIVEYILEDIKARSLFATHFHELSAINHD-- 733 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF 839 F N ++++ +IFL +V + +SYGI V ++AG+P VI RA ILK+ Sbjct: 734 SFVNLSMKIERQGNELIFLREVEEKPSLNSYGIYVARIAGIPLKVIKRANIILKSL 789 >gi|71904476|ref|YP_281279.1| DNA mismatch repair protein MutS [Streptococcus pyogenes MGAS6180] gi|90109860|sp|Q48QT6|MUTS_STRPM RecName: Full=DNA mismatch repair protein mutS gi|71803571|gb|AAX72924.1| DNA mismatch repair protein [Streptococcus pyogenes MGAS6180] Length = 851 Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust. Identities = 286/891 (32%), Positives = 471/891 (52%), Gaps = 67/891 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYPDAFLLFRMGDFYELFYEDAVKAAQLLEIGLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI++G+++A+ EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPHHSAQQYIDVLIELGYKVAVAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSAK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204 + +N+L+AV + +A++D+STG F ++ ++ + S+I + +E++ +L Sbjct: 121 PDSANNFLVAVDFDGCRYGLAYMDVSTGEFCVTDLADFTSVRSEIQNLKAKEVLLG-FDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E L + + + + V+ D S+ + G + VE TAA + Sbjct: 180 SEEEQTILVKQMNLLLSYEETVYEDKSLID---------------GQLTTVELTAAGKLL 224 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT 323 Y+ KTQM + +I+ L + A +S+L+++ +++ SL +D + T Sbjct: 225 QYVHKTQMRELSHLQALVHYEIKDYLQMSYATKSSLDLVENARTNKKHGSLYWLLDETKT 284 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL I PL I R + I F+ I + LK D+ R SR+ Sbjct: 285 AMGMRLLRSWIDRPLVSKEAILERQEIIQVFLNAFIERTDLSNSLKGVYDIERLSSRVSF 344 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 G+ PKD+ + + I + D P + V + LP+ LE + + + D Sbjct: 345 GKANPKDLLQLGHTLAQVPYIKAILESFDSPC-VDKLVNDIDSLPE-LEYLIRTAIDPDA 402 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P +G +R G D LD R + + IA ++ K + + I NLKI +N GY+ Sbjct: 403 PATISEGSIIRTGFDERLDHYRKVMREGTGWIADIEAKERQASGINNLKIDYNKKDGYYF 462 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 VT+S+ S++ + F + T+ N R+ T EL +E ++ A + +E + F Sbjct: 463 HVTNSNLSLVP------EHFFRKATLKNSERYGTAELAKIEGQMLEAREESSSLEYDIFM 516 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 + + L ++++A +D+ +LA++A+ +Y RP +++ +++GRH +VE Sbjct: 517 CIRAQVETYINRLQKLAKILATVDVLQSLAVVAETNHYIRPQFNDNHVITIQEGRHAVVE 576 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 K + Q +I N S D+ + + L+TGPNM GKST++RQ AL VIMAQMGS+V Sbjct: 577 KVMGVQE---YIPN----SISFDQQTS-IQLITGPNMSGKSTYMRQLALTVIMAQMGSFV 628 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 A + + + D +F+R+G+AD+L SG+STFMVEM+E + +A++ S ++ DE+GRGTA Sbjct: 629 AADHVDLPLFDAIFTRIGAADDLISGQSTFMVEMMEANQAIKRASDNSLILFDELGRGTA 688 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DG+++A A IEY+H+ + + ATH+HELTDLS L N + + + + FLH Sbjct: 689 TYDGMALAQAIIEYIHDRVGAKTIFATHYHELTDLSTKLTSLVNVHVATLEKDGDVTFLH 748 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN----------------Q 847 K+ G AD SYGI V K+AGLP +++ RA ++L E Q Sbjct: 749 KIAEGPADKSYGIHVAKIAGLPKSLLKRADEVLTRLETQSRSTEIISVPSQVESSSAVRQ 808 Query: 848 KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + L+ E + E + L E I +N M+PL A+ TLY +K Sbjct: 809 GQLSLFGDEEKAHEIRQAL--------EAIDVMN---MTPLQAMTTLYELK 848 >gi|312865859|ref|ZP_07726081.1| DNA mismatch repair protein MutS [Streptococcus downei F0415] gi|311098734|gb|EFQ56956.1| DNA mismatch repair protein MutS [Streptococcus downei F0415] Length = 853 Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust. Identities = 286/886 (32%), Positives = 478/886 (53%), Gaps = 55/886 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L I+LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKESYPDAFLLFRMGDFYELFYDDAVKAAQILEISLTSRNKNADNPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI L+ +G+++AI EQ+E P +A +V+R VV+++TPGT+ + Sbjct: 67 VPYHSAQQYIDVLVDLGYKVAIAEQMEDPKKAV-----GVVKREVVQVITPGTVVDS--- 118 Query: 146 SPTDS--NYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEK 202 S DS N+L+A+ + + ++++D+STG + S ++ + S+I + +E++ Sbjct: 119 SKPDSSNNFLVAIDYLDGIYGLSYMDLSTGEFYATSLTDFTAVRSEIQNLKAKEVVLG-F 177 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAA 261 +L+ + ++L + + + + V+ D V G S VE AA Sbjct: 178 DLNDKQEEALTKQMNLLLSPEKEVYED----------------VQLIGPDLSIVEAQAAG 221 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDY 320 + Y+ TQ + +I+ L + A +++L++L S++ SL +D Sbjct: 222 KLLQYVHTTQKRELSHLQGLVHYEIKDFLQMTYATKTSLDLLENARTSKKHGSLFWLLDA 281 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G RL I PL KI R + + F+ N + + LK D+ R SR Sbjct: 282 TKTAMGMRLLRTWIDRPLVSREKILGRQEIVQTFLDNFFERSDLTDSLKGVYDIERLASR 341 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + G+ PKD+ + + S + + L + L E + LP+ LE + S L Sbjct: 342 VSFGKANPKDLLQLGHTL-SQVPKIKAILASFASPILDQLNEAIDALPE-LESLIVSALD 399 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D P +GG ++ G D LD R + + IA ++ K + I LKI +N G Sbjct: 400 QDAPATITEGGMIKTGFDQQLDHYRQVMREGTTWIAEIEAKERAASGISTLKIDYNRKDG 459 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+ VT+S+ S++ D F + T+ N RF T EL +E + A + +E + Sbjct: 460 YYFHVTNSNLSLVP------DHFFRKATLKNSERFGTAELAKIEGDMLEAREHSATLEYD 513 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F + N + + + L + ++ IA +D +LA++A+ +Y RP ++ ++DGRH Sbjct: 514 IFMTVRNQVEKYIQRLQDLAKNIATVDALQSLAVVAENNHYVRPQFNDQEVIDIQDGRHA 573 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + Q +I N L D+++ + L+TGPNM GKST++RQ AL V+MAQ+G Sbjct: 574 VVEKVMGTQE---YIPNTITL----DQDTA-IQLITGPNMSGKSTYMRQLALTVVMAQIG 625 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+V A A++ I D +++R+G+AD+L SG+STFMVEM+E + +A++QS ++ DE+GR Sbjct: 626 SFVAAESANLPIFDAIYTRIGAADDLISGQSTFMVEMMEANMAIQRASSQSLILFDELGR 685 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A IE++H+ + ATH+HELT+LS SL N + + + + Sbjct: 686 GTATYDGMALAQAIIEHIHDQVGAKTFFATHYHELTELSTSLTHLVNVHVATLEKDGDVT 745 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--KLYHHNQKDMRLYYPEIQ 858 FLHK+ G AD SYG+ V K+AGLP ++ RA IL E + +Q++ ++ Sbjct: 746 FLHKITAGPADKSYGVHVAKIAGLPKDLLQRATKILTDLESHSVSLTSQEEASGLDRTVK 805 Query: 859 TKESKNNLS------KNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + LS NDKL + ++ L++ M+P+ A+ L+ +K Sbjct: 806 QETDNQQLSLFEVAEPNDKL-AQALQNLDVVNMTPMEAMNALFELK 850 >gi|323341470|ref|ZP_08081711.1| DNA mismatch repair protein HexA [Lactobacillus ruminis ATCC 25644] gi|323091081|gb|EFZ33712.1| DNA mismatch repair protein HexA [Lactobacillus ruminis ATCC 25644] Length = 875 Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust. Identities = 278/828 (33%), Positives = 452/828 (54%), Gaps = 50/828 (6%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 ++ TPMM+QY+EIK PD+ +FYR+GDFYE+F DDA+ ++ L +TLT R K IP Sbjct: 5 QTETPMMKQYLEIKEQYPDAFLFYRLGDFYEMFNDDAVKGAQLLELTLTTRNKKSKNPIP 64 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP H +YI LI G+++AICEQ+E P AK +V+R V++LVTPGT + Sbjct: 65 MCGVPHHAVQNYIDILIDKGYKVAICEQMEDPKLAK-----GMVKREVIQLVTPGTNIDM 119 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSE 201 + ++NYL A+ ++ A+ D+STG + S + D L+++++ + +EI+ E Sbjct: 120 RTGEAGENNYLTALHEQDGKYGFAYADLSTGELRCSILEDDDSLLNEMISLKTKEIVIDE 179 Query: 202 K--ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 E + + + L + + +P +++ + S +EK Sbjct: 180 SVSEKTIEKIRKLRVLVSSQESVEPASELSYAVQDVE----------------SDLEKEV 223 Query: 260 AAAAISYIKKTQMVNKPTIGYPERE---DIQSTLFIDSAARSNLEILRTL-SGSREQSLL 315 ++Y+KKTQ K T+ + ++ + L +D A+ NLE+L+ +G + +LL Sbjct: 224 LNHLLTYVKKTQ---KRTLAHLQKAVHYEPAYFLKLDRYAKQNLELLQNARTGKKSGTLL 280 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T G RL + I+ PL + +I R +N +++ + +Q LK D+ Sbjct: 281 WLLDETKTAMGARLLKQWISRPLINPAQIKERQLIVNDQLEHYFERSSLQDELKQVYDLE 340 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEE--LRGAVEKLKKLPQSLEK 433 R R+ G +D+ ++ + I ++ +L E G + +L + + Sbjct: 341 RLAGRIAFGNVNGRDLIQLKTSLAHVPQIR--YVLEELNEHGIYDGILARLDPVEDVFD- 397 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L + ++ P +GG ++ G + LD+ K+ +A L+ E+T I NLKI Sbjct: 398 LLDRSIDEEPPISVTEGGVIKPGYNEELDKYTDAMKNGKQWLAELEASEREKTGIHNLKI 457 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GY+IEV+ ++ + L + R+ +QT+ N RF T EL + E I A + Sbjct: 458 GFNRVFGYYIEVSKANVAKL-----PEGRYERKQTLVNAERFITPELKEKEALILGAESK 512 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY-CRPIIDNSTNF 612 +E F + + +Q E L + IA +D + A ++++ ++ C ++ +S + Sbjct: 513 TFELEYRLFVEVREKVKKQIERLQKLAAAIAELDCLQSFASVSEDNHFVCPTLVSDSHDL 572 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 +K G HP+VE+ L +QS P D+S P ++ + L+TGPNM GKST++RQ AL Sbjct: 573 EIKAGWHPVVERVLGKQSYVP-----NDVSMPEGRD---ILLITGPNMSGKSTYMRQLAL 624 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 IMAQ+G +VPA A + I D++F+R+G+AD+L SG STFMVEM ET L A+ S Sbjct: 625 TAIMAQIGCFVPAKEAKMPIFDQIFTRIGAADDLISGESTFMVEMKETNEALQNASKNSL 684 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 ++ DEIGRGTAT DG+++A A IEY+H+ + + L +TH+HELT L + L+ N + Sbjct: 685 LLFDEIGRGTATYDGMALAQAIIEYVHDNVQAKTLFSTHYHELTVLDEELEHLENIHVGA 744 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N ++FLHK+ G AD SYGI V KLAG+P ++ RA ILK E Sbjct: 745 VEKNGELVFLHKMKKGPADRSYGIHVAKLAGMPEKLLERADVILKKLE 792 >gi|30021861|ref|NP_833492.1| DNA mismatch repair protein [Bacillus cereus ATCC 14579] gi|44888188|sp|Q81A25|MUTS_BACCR RecName: Full=DNA mismatch repair protein mutS gi|29897417|gb|AAP10693.1| DNA mismatch repair protein mutS [Bacillus cereus ATCC 14579] Length = 884 Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust. Identities = 271/831 (32%), Positives = 469/831 (56%), Gaps = 65/831 (7%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R + IPMCGVP Sbjct: 1 MIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 61 YHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTIDE 115 Query: 148 TDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEKEL 204 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 116 KENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DSSF 174 Query: 205 SHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 S E L ETL A A P +H + N++ + ++ Sbjct: 175 SKDELNKLTETLKMTISYEDATAIPE-GLEHLVK--------NVSQAKLIKAVGRL---- 221 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSLL 315 +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + SLL Sbjct: 222 ----FNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGSLL 274 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T GGR+ + + PL +I RL+ + F+ + L +++ LK D+ Sbjct: 275 WLLDKTKTAMGGRMLKQWMERPLIQKERIEERLEMVETFVNDYFLREDLKEKLKEVYDLE 334 Query: 376 RSLSRLKIGRGEPKDIAVIRD------GIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 R ++ G +D+ +R I I++L+ + L ++GA + Sbjct: 335 RLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYASRL---IQGA-----DPCE 386 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 SL + L + ++ P +DG ++DG + LD+ R + K IA L+ + + T IK Sbjct: 387 SLTELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGIK 446 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 +LKI +N GY+IEVT ++ + L + R+ +QT++N RF T EL + E I Sbjct: 447 SLKIGYNRIFGYYIEVTKANLAAL-----PEGRYERKQTLANAERFITDELKEKETLILE 501 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 A + +E + F L + L + ++VI+ +D+ + A +++E+ + + ++ Sbjct: 502 AEEKIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKLVLTTK 561 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++RQ Sbjct: 562 REIFIKDGRHPVVEKVL---NGKLYVPNDCIMPEKMD-----VFLITGPNMSGKSTYMRQ 613 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 AL+ +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ Sbjct: 614 LALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASE 673 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 +S ++ DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L +SL + N Sbjct: 674 RSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLDQLKNVH 733 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 734 VSAIEENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 784 >gi|76800771|ref|YP_325779.1| DNA mismatch repair protein MutS [Natronomonas pharaonis DSM 2160] gi|115299210|sp|Q3IUH3|MUTS_NATPD RecName: Full=DNA mismatch repair protein mutS gi|76556636|emb|CAI48207.1| DNA mismatch repair protein MutS 2 [Natronomonas pharaonis DSM 2160] Length = 856 Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust. Identities = 289/900 (32%), Positives = 465/900 (51%), Gaps = 75/900 (8%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 + E TPM+ QY+E+ D+LV +++GDFYE F + A +R L ITLT+R Sbjct: 11 MAEKADELTPMLSQYLELCERYDDALVLFQVGDFYETFCEAAETTARLLEITLTQREDST 70 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G PM G+P+ A YI+ L+ G+R+A+ +Q+E+ LV R V R+VTPG Sbjct: 71 GT-YPMAGIPIDNAESYIETLLDAGYRVAVADQVEA-----AEAASGLVDRAVTRVVTPG 124 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISD-IMRIDPRE 196 TLTE +LL+ D+N+ VA + + +A +D+STG + + ++D + R DP E Sbjct: 125 TLTETELLAEADNNF---VACLTDGYGLALLDVSTGDCYATRLDRTAGVADELERFDPAE 181 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQP--NVFFDHSISESRIADYYNITTVDTFGSFSQ 254 + + + G + P F+ + R+ Y+ T + S Sbjct: 182 AVVGPDAPT--------DCFGEDCMVTPYERSAFELDAARERVEAYFGSTAL-----ASD 228 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYP-------EREDIQSTLFIDSAARSNLEIL--RT 305 E A A ++Y + + P R D + + +D+ A +LEI R Sbjct: 229 AEIRACGALLAYAEYARGTTTDGETEPLDYINQLTRYDPREYMLLDAVAVRSLEIFEPRH 288 Query: 306 LSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQ 365 + G +L++T+D + + GGR + + PL D+ +I RLD++ ++ Sbjct: 289 VHGLEGAALVETLDETASALGGRELRDWLRRPLLDADRIERRLDAVEALVERVSDRERAS 348 Query: 366 KILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLK 425 + L D+ R ++ + GR + +D+ + + S + L L ++ G EKL Sbjct: 349 ERLADVYDLERLVAAVSRGRADARDLRALESTL-SVVPELRACL-----DDAAGESEKLA 402 Query: 426 KLPQSLEKT------LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQ 479 + + L+ + + D P +GG +RDG D LDE R+ K I L+ Sbjct: 403 SVRERLDDCTAVRELIDRAIVDSPPVEITEGGVIRDGYDERLDELRATERDGKAWIDDLE 462 Query: 480 LKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLE 539 K E T I +LK+ HN+ GY+IEVT+ + + D + RQT+ N RF T E Sbjct: 463 AKERERTGIDSLKVGHNSVHGYYIEVTNPNLDAVPDD------YQRRQTLKNSERFYTPE 516 Query: 540 LIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQ 599 L + E+ I A + A +E E F + + +E + ++ +A +D+ ALA +A + Sbjct: 517 LKEREDEIIRAEDRADELEYERFRSVREEVAAATERIQETARAVAELDVLCALATVAAQY 576 Query: 600 NYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPN 659 +YCRP +D + ++ GRHP+VE+T +SS F+ N DL + L ++TGPN Sbjct: 577 DYCRPTVD-ADGIYIEGGRHPVVERT---ESS--FVPNPTDLPA-----TEPLAVITGPN 625 Query: 660 MGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIE 719 M GKST++RQ AL ++ Q+GS+VPA A + I D++F+RVG++D++A GRSTFMVEM E Sbjct: 626 MSGKSTYMRQVALTSVLTQLGSFVPAERAAVPIFDRVFTRVGASDDIAGGRSTFMVEMTE 685 Query: 720 TASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLS 779 ++IL+ A +S V+LDE+GRGT+T DG +IA AT EYLH+ L ATH HELTD++ Sbjct: 686 LSTILDAADGRSLVVLDEVGRGTSTRDGYAIAQATTEYLHDEAGAFTLFATHHHELTDVA 745 Query: 780 KSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF 839 L + N + + +G+ F H + PG A+ SYG++V ++AG+P V+ RA ++L Sbjct: 746 AELPQARNYHFAAARTADGVEFDHDLRPGAAEASYGVEVAEMAGVPEAVVDRADELLGG- 804 Query: 840 EKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 MR S + + L E ++ ++L E +PL AL L +K+ Sbjct: 805 ----------MRSNDTPPAAAASTDGGRVPEALLAE-LEAVDLAETTPLEALNLLSRLKS 853 >gi|229174434|ref|ZP_04301966.1| DNA mismatch repair protein mutS [Bacillus cereus MM3] gi|228608994|gb|EEK66284.1| DNA mismatch repair protein mutS [Bacillus cereus MM3] Length = 884 Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust. Identities = 272/828 (32%), Positives = 465/828 (56%), Gaps = 59/828 (7%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M++QY+++K+ D+ +F+R+GDFYE+FF+DA+ A+ L ITLT R IPMCGVP Sbjct: 1 MIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSDRIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A +YI++L++ G+++A+CEQ+E P AK +VRR VV+L+TPGT+ E + + Sbjct: 61 HHAAKNYIEQLVEKGYKVAVCEQVEDPKTAK-----GVVRREVVQLITPGTMMEGRTIDE 115 Query: 148 TDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEKEL 204 ++N+L A+ +A+A D++TG ++ T + + ++ ++ +EI+ + Sbjct: 116 KENNFLAALTYFEDGSYALACNDLTTGQNTVTLLTGSVEDILLEVYATGSKEIVV-DSTF 174 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTV-----DTFGSFSQVEKTA 259 S E L TL +IS Y + TT+ + SQ + Sbjct: 175 SKDELNKLTATL------------KMTIS------YEDATTIPEGLEHLVKNVSQAKLIK 216 Query: 260 AAAAI-SYIKKTQMVNKPTIGYPEREDIQST---LFIDSAARSNLEILRTL-SGSREQSL 314 A + +Y+ +TQ K ++ + + +I T + ID ++ NLE+ TL + + SL Sbjct: 217 AVGRLFNYVIRTQ---KRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGSL 273 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L +D + T GGR+ + + PL K+ RL+ + F+ + L +++ LK D+ Sbjct: 274 LWLLDKTKTAMGGRMLKQWMERPLIQKEKVEERLEMVETFVNDYFLREDLKEKLKEVYDL 333 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLPQSLE 432 R ++ G +D+ +R + IL L N L + +SL Sbjct: 334 ERLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPC----ESLT 389 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 + L + ++ P +DG ++DG + LD+ R + K IA L+ + + T +K+LK Sbjct: 390 ELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRERDITGVKSLK 449 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 I +N GY+IEVT ++ + L + R+ +QT++N RF T EL + E I A Sbjct: 450 IGYNRIFGYYIEVTKANLAAL-----PEGRYERKQTLANAERFITDELKEKETLILEAEE 504 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 + +E + F L + L + ++VI+ +D+ + A +++E+ + +P++ Sbjct: 505 KIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTKREI 564 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 +KDGRHP+VEK L + K ++ NDC + D ++L+TGPNM GKST++RQ AL Sbjct: 565 FIKDGRHPVVEKVL---NGKLYVPNDCIMPEKMD-----VFLITGPNMSGKSTYMRQLAL 616 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 + +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+STFMVEM+E + + A+ +S Sbjct: 617 VTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERSL 676 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 ++ DEIGRGT+T DG+++A A IE++H+ + L +TH+HELT L +SL + N + Sbjct: 677 ILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEESLGQLKNVHVSA 736 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + N ++FLHK+ G AD SYGI V +LA LP+++I+RA ++L E Sbjct: 737 IEENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 784 >gi|306826471|ref|ZP_07459782.1| DNA mismatch repair protein MutS [Streptococcus pyogenes ATCC 10782] gi|304431330|gb|EFM34328.1| DNA mismatch repair protein MutS [Streptococcus pyogenes ATCC 10782] Length = 851 Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust. Identities = 279/880 (31%), Positives = 475/880 (53%), Gaps = 45/880 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYPDAFLLFRMGDFYELFYEDAVKAAQLLEIGLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI++G+++A+ EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPHHSAQQYIDVLIELGYKVAVAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSAK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204 + +N+L+AV + +A++D+STG F ++ ++ + S+I + +E++ +L Sbjct: 121 PDSANNFLVAVDFDGCRYGLAYMDVSTGEFCVTDLADFTSVRSEIQNLKAKEVLLG-FDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E L + + + + V+ D S+ + G + VE TAA + Sbjct: 180 SEEEQTILVKQMNLLLSYEETVYEDKSLID---------------GQLTTVELTAAGKLL 224 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT 323 Y+ KTQM + +I+ L + A +S+L+++ +++ SL +D + T Sbjct: 225 QYVHKTQMRELSHLQALVHYEIKDYLQMSYATKSSLDLVENARTNKKHGSLYWLLDETKT 284 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL I PL I R + I F+ I + LK D+ R SR+ Sbjct: 285 AMGMRLLRSWIDRPLVSKEAILERQEIIQVFLNAFIERTDLSNSLKGVYDIERLSSRVSF 344 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 G+ PKD+ + + + + + L++ + V + LP+ LE + + + D Sbjct: 345 GKANPKDLLQLGHTL-AQVPYIKAILESFNSPCVDKLVNDIDSLPE-LEYLIRTAIDPDA 402 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P +G +R G D LD R + + IA ++ K + + I NLKI +N GY+ Sbjct: 403 PATISEGSIIRTGFDERLDHYRKVMREGTGWIADIEAKERQASGINNLKIDYNKKDGYYF 462 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 VT+S+ S++ + F + T+ N R+ T EL +E ++ A + +E + F Sbjct: 463 HVTTSNLSLVP------EHFFRKATLKNSERYGTAELAKIEGQMLEAREESSSLEYDIFM 516 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 + + L ++ +A +D+ +LA++A+ +Y RP +++ +++GRH +VE Sbjct: 517 CIRAQVETYINRLQKLAKTLATVDVLQSLAVVAETNHYIRPQFNDNHMITIQEGRHAVVE 576 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 K + Q +I N S D+ + + L+TGPNM GKST++RQ AL VIMAQMGS+V Sbjct: 577 KVMGVQE---YIPN----SISFDQQTS-IQLITGPNMSGKSTYMRQLALTVIMAQMGSFV 628 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 A + + + D +F+R+G+AD+L SG+STFMVEM+E + +A++ S ++ DE+GRGTA Sbjct: 629 AADHVDLPLFDAIFTRIGAADDLISGQSTFMVEMMEANQAIKRASDNSLILFDELGRGTA 688 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DG+++A A IEY+H+ + + ATH+HELTDLS L N + + + + FLH Sbjct: 689 TYDGMALAQAIIEYIHDRVGAKTIFATHYHELTDLSTKLTSLVNVHVATLEKDGDVTFLH 748 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ--KDMRLYYPEIQTKE 861 K+ G AD SYGI V K+AGLP +++ RA ++L E + P +E Sbjct: 749 KIAEGPADKSYGIHVAKIAGLPKSLLKRADEVLTRLETQSRSTEIISVPSKVEPSSAARE 808 Query: 862 SKNNLSKND---KLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + +L ++ + + ++ +++ M+PL A+ TLY +K Sbjct: 809 GQLSLFPDEDKSQEIIHTLEAIDVMNMTPLQAMTTLYELK 848 >gi|328911807|gb|AEB63403.1| DNA mismatch repair recognition factor [Bacillus amyloliquefaciens LL3] Length = 855 Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust. Identities = 284/897 (31%), Positives = 483/897 (53%), Gaps = 72/897 (8%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M++QY++IK+ D+ +F+R+GDFYE+FF+DA AS+ L ITLT R IPMCGVP Sbjct: 1 MIQQYLKIKAEYQDAFLFFRLGDFYEMFFEDAKKASQELEITLTSRDGGSADKIPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H+A YI++LIK G+++AICEQ E P + K +V+R VV+L+TPGT+ + + + Sbjct: 61 YHSAAAYIEQLIKKGYKVAICEQTEDP-----KAAKGVVKREVVQLITPGTVMDGKGIHE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGI-FKISTSNHDRLISDIMRIDPREIIFSEKELSH 206 +++N++ +V+ + +A D++TG + + ++S+I + +EI+ S K + Sbjct: 116 SENNFIASVSAFPGGYGLALSDLTTGENLAVFIERIEDVMSEIYSVGAKEIVVSSK-FNE 174 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITT-------VDTFGSFSQVEKTA 259 L E G SI + ++ D I +TF Sbjct: 175 NTAAQLKERCGATI----------SIEDGKMTDRIEIAKHLPGEELTETFMRL------- 217 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTI 318 +Y++KTQ + + + +++ + ID ++ NLE+ T+ S S++ SLL + Sbjct: 218 ----YTYLQKTQKRSLDHLQPVQVYELEEAMKIDLYSKRNLELTETIRSKSKKGSLLWLL 273 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D + T GGRL + I PL +++I R + + I + +++ LK D+ R Sbjct: 274 DETKTAMGGRLLKQWIDRPLIRASQIEERQEMVETLINHLFEREDLRERLKEVYDLERLA 333 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLS 436 R+ G +D+ +++ ++ +I L L + +E G ++ L L Sbjct: 334 GRVAFGNVNARDLIQLKESLKQVPSIKELVGSLNHKKAKERAGLIDPCG----DLLDLLE 389 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 L ++ P ++G ++DG LDE R K IA L+ + T I++LK+ N Sbjct: 390 DALHENPPLSLKEGNLIKDGYHQKLDEYRDASKNGKDWIARLEQQERAYTGIRSLKVGFN 449 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+IEVT ++ +L+ R+ +QT++N R+ T EL + E I A N+ Sbjct: 450 KVFGYYIEVTKANLHLLEDG-----RYERKQTLTNAERYITPELKEKEALILEAENNICE 504 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII-DNSTNFIVK 615 +E E F L + + L ++ ++ +D A +++ ++Y +P+ DN I Sbjct: 505 LEYELFAGLREKVKQFIPRLQRLAKQMSELDALQCFATISENRHYTKPVFSDNEVKVI-- 562 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 +GRHP+VEK + S+ ++ N+C + S ++ L+TGPNM GKST++RQ AL+ I Sbjct: 563 EGRHPVVEKVM---DSQEYVPNNCLMG-----ESREMLLITGPNMSGKSTYMRQIALLSI 614 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+G +VPA A + I D++F+R+G+AD+L SG+STFMVEM+E + + AT S ++ Sbjct: 615 MAQIGCFVPAKEAVLPIFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIVNATKDSLILF 674 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DG+++A A IEY+H+ + L +TH+HELT L L + N ++ + Sbjct: 675 DEIGRGTSTYDGMALAQAIIEYVHDHIGAKTLFSTHYHELTVLEDKLPQLKNVHVRAEEY 734 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--------------K 841 N ++FLH++ G AD SYGI V +LA LP+ +ISRA +ILK E K Sbjct: 735 NGTVVFLHQIKEGAADKSYGIHVAQLAELPDDLISRAQEILKQLEQSGDKPELPAAPEKK 794 Query: 842 LYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + ++ + + ++ +S +K +E K +N+ +M+PL A+ +Y ++ Sbjct: 795 PVVKEEPAQLSFFADGEKEQKAPAVSHKEKQVLEAFKSINILDMTPLEAMNEMYKLQ 851 >gi|254374891|ref|ZP_04990372.1| DNA mismatch repair protein MutS [Francisella novicida GA99-3548] gi|151572610|gb|EDN38264.1| DNA mismatch repair protein MutS [Francisella novicida GA99-3548] Length = 855 Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust. Identities = 300/897 (33%), Positives = 479/897 (53%), Gaps = 74/897 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +++ + TPM++QY++IKS D L+FYRMGDFYELFFDDA A+ L ITLT RGK G+ Sbjct: 13 QDISNHTPMIQQYLKIKSQYQDILLFYRMGDFYELFFDDAKKAAELLDITLTARGKSNGE 72 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H A YI K++K G IAICEQ P +K V R V R++TP T+ Sbjct: 73 SIPMAGVPYHAAEAYIAKIVKKGLSIAICEQTGDP-----NTSKGPVERQVTRIITPATV 127 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKIST-SNHDRLISDIMRIDPREI 197 +E+ L + L+++ ++ +A+ + G I+ + T ++ + L + ++++ P+EI Sbjct: 128 SEEAFLDSNQDSILVSIFEKNNKYYLAYTSYTQGKIYLVKTLTSLNELKNTVLKLSPQEI 187 Query: 198 IFSEKELSHAE------------YKSLFETLGNVAVAQPNVFFDHSISESRIADYYN--I 243 I + +EL+ Y S FE A N D +I+ + + Y N + Sbjct: 188 ITNSRELAQQNPFKKPIKALEEWYYSNFE-----AKKYINDSLDTNIANNILNLYKNDQL 242 Query: 244 TTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEIL 303 TT+ + S+ ++ I K + I Y + +D TL ID +R NLE Sbjct: 243 TTIGSILSY-----------LTNILKDTPRHITDISYEQEQD---TLNIDINSRINLE-- 286 Query: 304 RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINP 363 L + + SLL I T G RL ++P + + TR + IN +N + Sbjct: 287 --LDNNSKSSLLSIIGKCKTSLGSRLLKRYFSNPTRNLNILATRHNIINSLGENQYFLK- 343 Query: 364 IQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAV 421 IQ +L D+ R +SR+ +G +PKD+ + D + + L + + PE + + Sbjct: 344 IQDVLSYISDIERIISRVALGTVKPKDLVALHDSLEQLPILKKLLSEKNTPEIENINKCI 403 Query: 422 EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLK 481 +L +L L+K + ++ P RDGG +++G D LDE +S++D S + + Sbjct: 404 HQLDELVTLLDKAII----ENPPATIRDGGVIKEGFDKELDELKSIKDNSYDFLIKFEEL 459 Query: 482 YAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELI 541 ++T I LK+ +N GY+IE++ A + + +I RQT+ R+ T EL Sbjct: 460 QKQKTGISTLKVGYNRVHGYYIELSKQHADKIPTE------YIRRQTLKASERYITEELK 513 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 + E++I ++ AL E +E L +IE + + + IA ID+ A A + Sbjct: 514 NFEDKILSSKEKALAREKLIYETLLKKVIEYYKQIQETAASIAEIDVLANFAERAIKLKL 573 Query: 602 CRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 +P ++ +K+ RH +E + + PFI ND LS K++ L ++TGPNMG Sbjct: 574 SQPKFNSLAKLELKEVRHLAIEHNIDE----PFIPNDTLLS----KDTNTLQIITGPNMG 625 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKST++RQ A ++ +A +GS+VPASYA I +D +++R+G++D+++SGRSTFMVEM ETA Sbjct: 626 GKSTYMRQVAQLIFLAYIGSFVPASYADICDIDTIYTRIGASDDISSGRSTFMVEMTETA 685 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS 781 ILN A+ +S VI+DEIGRGT+T DGL++A A E + L ATH+ ELT+L+K Sbjct: 686 YILNNASAKSLVIMDEIGRGTSTFDGLALAKACAEKFAQIG-AFTLFATHYFELTELAKQ 744 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 N + + + I F+HK + G A SYGIQV KLAG+ V+ A L EK Sbjct: 745 YPNVCNIHFEAKEYKDNIYFMHKAVTGAAKKSYGIQVAKLAGISQDVLESAKQNLYNLEK 804 Query: 842 LYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 H + +IQ + ++N +K++ ++++ ++PL AL L+ +K Sbjct: 805 KQHLAES------TQIQAQFELEPTTRNP--LQQKLEAIDINTITPLEALNILFELK 853 >gi|56708538|ref|YP_170434.1| DNA mismatch repair protein MutS [Francisella tularensis subsp. tularensis SCHU S4] gi|110671009|ref|YP_667566.1| DNA mismatch repair protein MutS [Francisella tularensis subsp. tularensis FSC198] gi|254371164|ref|ZP_04987166.1| DNA mismatch repair protein MutS [Francisella tularensis subsp. tularensis FSC033] gi|81677019|sp|Q5NEV8|MUTS_FRATT RecName: Full=DNA mismatch repair protein mutS gi|123359378|sp|Q14GB1|MUTS_FRAT1 RecName: Full=DNA mismatch repair protein mutS gi|56605030|emb|CAG46132.1| DNA mismatch repair protein MutS [Francisella tularensis subsp. tularensis SCHU S4] gi|110321342|emb|CAL09515.1| DNA mismatch repair protein MutS [Francisella tularensis subsp. tularensis FSC198] gi|151569404|gb|EDN35058.1| DNA mismatch repair protein MutS [Francisella tularensis subsp. tularensis FSC033] Length = 857 Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust. Identities = 298/897 (33%), Positives = 481/897 (53%), Gaps = 74/897 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +++ + TPM++QY++IKS D L+FYRMGDFYELFFDDA A+ L ITLT RGK G+ Sbjct: 13 QDISNHTPMIQQYLKIKSQYQDILLFYRMGDFYELFFDDAKKAAELLDITLTARGKSNGE 72 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H A YI K++K G IAICEQ P +K V R V R++TP T+ Sbjct: 73 SIPMAGVPYHAAEAYIAKIVKKGLSIAICEQTGDP-----NTSKGPVERQVTRIITPATV 127 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKIST-SNHDRLISDIMRIDPREI 197 +E+ L + L+++ ++ +A+ + G I+ + T ++ + L + ++++ P+EI Sbjct: 128 SEEAFLDNNQDSILVSIFEKNNKYYLAYTSYTQGKIYLVKTLTSLNELKNTVLKLSPQEI 187 Query: 198 IFSEKELSHAE------------YKSLFETLGNVAVAQPNVFFDHSISESRIADYYN--I 243 I + +EL+ Y S FE A N D +I+ + + Y N + Sbjct: 188 ITNSRELAQQNPFKKPIKALEEWYYSNFE-----AKKYINDSLDTNIANNILNLYKNDQL 242 Query: 244 TTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEIL 303 TT+ + S+ ++ I K + I Y + +D TL ID +R NLE Sbjct: 243 TTIGSILSY-----------LTNILKDTPRHITDISYEQEQD---TLNIDINSRINLE-- 286 Query: 304 RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINP 363 L + + SLL I T G RL ++P + + TR IN +N + Sbjct: 287 --LDNNSKSSLLSIIGKCKTSLGSRLLKRYFSNPTRNLNILATRHSIINSLGENQHFLK- 343 Query: 364 IQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAV 421 IQ +L D+ R +SR+ +G +PKD+ +RD + + L + + PE + + Sbjct: 344 IQDVLSYISDIERIISRVALGTVKPKDLVALRDSLEQLPILKKLLSEKNTPEITNINNRI 403 Query: 422 EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLK 481 +L +L L+K + ++ PT RDGG +++G D LDE +S++D S + + Sbjct: 404 HQLDELVTLLDKAII----ENPPTTIRDGGVIKEGFDKELDELKSIKDNSYDFLIKFEEL 459 Query: 482 YAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELI 541 ++T I LK+ +N+ GY+IE++ A + + ++ RQT+ R+ T EL Sbjct: 460 QKQKTGISTLKVGYNSVHGYYIELSKQHADKIPTE------YVRRQTLKASERYITEELK 513 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 + E+++ ++ AL E ++ L +IE + + + IA ID+ A A + Sbjct: 514 NFEDKVLSSKEKALAREKLIYDTLLKKVIEYYKQIQETAASIAEIDVLANFAERAIKLKL 573 Query: 602 CRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 +P +N +K+ RH +E + + PFI ND LS K++ L ++TGPNMG Sbjct: 574 SQPKFNNLAKLELKEVRHLAIEHNIDE----PFIPNDTLLS----KDTNTLQIITGPNMG 625 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKST++RQ A ++ +A +GS+VPASYA I +D +++R+G++D+++SGRSTFMVEM ETA Sbjct: 626 GKSTYMRQVAQLIFLAYIGSFVPASYADICDIDTIYTRIGASDDISSGRSTFMVEMTETA 685 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS 781 ILN A+ +S VI+DEIGRGT+T DGL++A A E + L ATH+ ELT+L+K Sbjct: 686 YILNNASAKSLVIMDEIGRGTSTFDGLALAKACAEKFAQIG-AFTLFATHYFELTELAKQ 744 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 N + + + I F+HK + G A SYGIQV KLAG+ V+ A + Sbjct: 745 YPNVCNIHFEAKEYKDNIYFMHKAVTGAAKKSYGIQVAKLAGISQDVLESAK------QN 798 Query: 842 LYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 LY+ +K ++Q + ++N +K+ ++++ ++PL AL L+ +K Sbjct: 799 LYNLEKKQQLTESTQVQAQFQLEPTTQNP--LQQKLDAIDINTITPLEALNILFELK 853 >gi|187931226|ref|YP_001891210.1| DNA mismatch repair protein MutS [Francisella tularensis subsp. mediasiatica FSC147] gi|238691524|sp|B2SEQ6|MUTS_FRATM RecName: Full=DNA mismatch repair protein mutS gi|187712135|gb|ACD30432.1| DNA mismatch repair protein MutS [Francisella tularensis subsp. mediasiatica FSC147] Length = 844 Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust. Identities = 298/897 (33%), Positives = 480/897 (53%), Gaps = 74/897 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +++ + TPM++QY++IKS D L+FYRMGDFYELFFDDA A+ L ITLT RGK G+ Sbjct: 2 QDISNHTPMIQQYLKIKSQYQDILLFYRMGDFYELFFDDAKKAAELLDITLTARGKSNGE 61 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H A YI K++K G IAICEQ P +K V R V R++TP T+ Sbjct: 62 SIPMAGVPYHAAEAYIAKIVKKGLSIAICEQTGDP-----NTSKGPVERQVTRIITPATV 116 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKIST-SNHDRLISDIMRIDPREI 197 +E+ L + L+++ ++ +A+ + G I+ + T ++ + L + ++++ P+EI Sbjct: 117 SEEAFLDNNQDSILVSIFEKNNKYYLAYTSYTQGKIYLVKTLTSLNELKNTVLKLSPQEI 176 Query: 198 IFSEKELSHAE------------YKSLFETLGNVAVAQPNVFFDHSISESRIADYYN--I 243 I + +EL+ Y S FE A N D +I+ + + Y N + Sbjct: 177 ITNSRELAQQNPFKKPIKALEEWYYSNFE-----AKKYINDSLDTNIANNILNLYKNDKL 231 Query: 244 TTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEIL 303 TT+ + S+ ++ I K + I Y + +D TL ID +R NLE Sbjct: 232 TTIGSILSY-----------LTNILKDTPRHITDISYEQEQD---TLNIDINSRINLE-- 275 Query: 304 RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINP 363 L + + SLL I T G RL ++P + + TR IN +N + Sbjct: 276 --LDNNSKSSLLSIIGKCKTSLGSRLLKRYFSNPTRNLNILATRHSIINSLGENQHFLK- 332 Query: 364 IQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAV 421 IQ +L D+ R +SR+ +G +PKD+ +RD + + L + + PE + + Sbjct: 333 IQDVLSYISDIERIISRVALGTVKPKDLVALRDSLEQLPILKKLLSEKNTPEITNINNRI 392 Query: 422 EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLK 481 +L +L L+K + ++ PT RDGG +++G D LDE +S++D S + + Sbjct: 393 HQLDELVTLLDKAII----ENPPTTIRDGGVIKEGFDKELDELKSIKDNSYDFLIKFEEL 448 Query: 482 YAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELI 541 ++T I LK+ +N GY+IE++ A + + ++ RQT+ R+ T EL Sbjct: 449 QKQKTGISTLKVGYNRVHGYYIELSKQHADKIPTE------YVRRQTLKASERYITEELK 502 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 + E+++ ++ AL E ++ L +IE + + + IA ID+ A A + Sbjct: 503 NFEDKVLSSKEKALAREKLIYDTLLKKVIEYYKQIQETAASIAEIDVLANFAERAIKLKL 562 Query: 602 CRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 +P +N +K+ RH +E + + PFI ND LS K++ L ++TGPNMG Sbjct: 563 SQPKFNNLAKLELKEVRHLAIEHNIDE----PFIPNDTLLS----KDTNTLQIITGPNMG 614 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKST++RQ A ++ +A +GS+VPASYA I +D +++R+G++D+++SGRSTFMVEM ETA Sbjct: 615 GKSTYMRQVAQLIFLAYIGSFVPASYADICDIDTIYTRIGASDDISSGRSTFMVEMTETA 674 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS 781 ILN A+ +S VI+DEIGRGT+T DGL++A A E + L ATH+ ELT+L+K Sbjct: 675 YILNNASAKSLVIMDEIGRGTSTFDGLALAKACAEKFAQIG-AFTLFATHYFELTELAKQ 733 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 N + + + I F+HK + G A SYGIQV KLAG+ V+ A + Sbjct: 734 YPNVCNIHFEAKEYKDNIYFMHKAVTGAAKKSYGIQVAKLAGISQDVLESAK------QN 787 Query: 842 LYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 LY+ +K ++Q + ++N +K+ ++++ ++PL AL L+ +K Sbjct: 788 LYNLEKKQQLTESTQVQAQFQLEPTTQNP--LQQKLDAIDINTITPLEALNILFELK 842 >gi|224457713|ref|ZP_03666186.1| DNA mismatch repair protein [Francisella tularensis subsp. tularensis MA00-2987] gi|254875389|ref|ZP_05248099.1| mutS, DNA mismatch repair protein [Francisella tularensis subsp. tularensis MA00-2987] gi|254841388|gb|EET19824.1| mutS, DNA mismatch repair protein [Francisella tularensis subsp. tularensis MA00-2987] gi|282159757|gb|ADA79148.1| DNA mismatch repair protein [Francisella tularensis subsp. tularensis NE061598] Length = 846 Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust. Identities = 298/897 (33%), Positives = 481/897 (53%), Gaps = 74/897 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +++ + TPM++QY++IKS D L+FYRMGDFYELFFDDA A+ L ITLT RGK G+ Sbjct: 2 QDISNHTPMIQQYLKIKSQYQDILLFYRMGDFYELFFDDAKKAAELLDITLTARGKSNGE 61 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H A YI K++K G IAICEQ P +K V R V R++TP T+ Sbjct: 62 SIPMAGVPYHAAEAYIAKIVKKGLSIAICEQTGDP-----NTSKGPVERQVTRIITPATV 116 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKIST-SNHDRLISDIMRIDPREI 197 +E+ L + L+++ ++ +A+ + G I+ + T ++ + L + ++++ P+EI Sbjct: 117 SEEAFLDNNQDSILVSIFEKNNKYYLAYTSYTQGKIYLVKTLTSLNELKNTVLKLSPQEI 176 Query: 198 IFSEKELSHAE------------YKSLFETLGNVAVAQPNVFFDHSISESRIADYYN--I 243 I + +EL+ Y S FE A N D +I+ + + Y N + Sbjct: 177 ITNSRELAQQNPFKKPIKALEEWYYSNFE-----AKKYINDSLDTNIANNILNLYKNDQL 231 Query: 244 TTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEIL 303 TT+ + S+ ++ I K + I Y + +D TL ID +R NLE Sbjct: 232 TTIGSILSY-----------LTNILKDTPRHITDISYEQEQD---TLNIDINSRINLE-- 275 Query: 304 RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINP 363 L + + SLL I T G RL ++P + + TR IN +N + Sbjct: 276 --LDNNSKSSLLSIIGKCKTSLGSRLLKRYFSNPTRNLNILATRHSIINSLGENQHFLK- 332 Query: 364 IQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAV 421 IQ +L D+ R +SR+ +G +PKD+ +RD + + L + + PE + + Sbjct: 333 IQDVLSYISDIERIISRVALGTVKPKDLVALRDSLEQLPILKKLLSEKNTPEITNINNRI 392 Query: 422 EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLK 481 +L +L L+K + ++ PT RDGG +++G D LDE +S++D S + + Sbjct: 393 HQLDELVTLLDKAII----ENPPTTIRDGGVIKEGFDKELDELKSIKDNSYDFLIKFEEL 448 Query: 482 YAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELI 541 ++T I LK+ +N+ GY+IE++ A + + ++ RQT+ R+ T EL Sbjct: 449 QKQKTGISTLKVGYNSVHGYYIELSKQHADKIPTE------YVRRQTLKASERYITEELK 502 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 + E+++ ++ AL E ++ L +IE + + + IA ID+ A A + Sbjct: 503 NFEDKVLSSKEKALAREKLIYDTLLKKVIEYYKQIQETAASIAEIDVLANFAERAIKLKL 562 Query: 602 CRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 +P +N +K+ RH +E + + PFI ND LS K++ L ++TGPNMG Sbjct: 563 SQPKFNNLAKLELKEVRHLAIEHNIDE----PFIPNDTLLS----KDTNTLQIITGPNMG 614 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKST++RQ A ++ +A +GS+VPASYA I +D +++R+G++D+++SGRSTFMVEM ETA Sbjct: 615 GKSTYMRQVAQLIFLAYIGSFVPASYADICDIDTIYTRIGASDDISSGRSTFMVEMTETA 674 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS 781 ILN A+ +S VI+DEIGRGT+T DGL++A A E + L ATH+ ELT+L+K Sbjct: 675 YILNNASAKSLVIMDEIGRGTSTFDGLALAKACAEKFAQIG-AFTLFATHYFELTELAKQ 733 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 N + + + I F+HK + G A SYGIQV KLAG+ V+ A + Sbjct: 734 YPNVCNIHFEAKEYKDNIYFMHKAVTGAAKKSYGIQVAKLAGISQDVLESAK------QN 787 Query: 842 LYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 LY+ +K ++Q + ++N +K+ ++++ ++PL AL L+ +K Sbjct: 788 LYNLEKKQQLTESTQVQAQFQLEPTTQNP--LQQKLDAIDINTITPLEALNILFELK 842 >gi|116071726|ref|ZP_01468994.1| DNA mismatch repair protein [Synechococcus sp. BL107] gi|116065349|gb|EAU71107.1| DNA mismatch repair protein [Synechococcus sp. BL107] Length = 927 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 282/828 (34%), Positives = 446/828 (53%), Gaps = 44/828 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TP++R Y+E+K +P+ ++ YR+GDF+E FF+DA+ SR L +TLT + GK +G+ +PM Sbjct: 120 TPVLRHYVELKMAHPERVLLYRLGDFFECFFEDAITLSRELELTLTGKDAGKAIGR-VPM 178 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G+P H A Y LI++GH +A+C+Q+E+ +L++R + R++TPGT+ E+ Sbjct: 179 AGIPHHAAERYCSDLIRLGHSVALCDQLET-----TPAKGALLKRGITRVLTPGTVLEEG 233 Query: 144 LLSPTDSNYLMAVA------RIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPRE 196 +LS +N+L AV W +A D+STG ++ D L + ++ E Sbjct: 234 MLSARRNNWLAAVVVEPANKHQPFRWGLAQADVSTGDVQVLQREGSDGLHQHLAQLQASE 293 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 +++S + + A + +G ++ + F +E+ + ++YN+ ++D G + Sbjct: 294 LLWSGDDPAPAWCP---DRVGLTPMS--STPFSRPEAEAALLEHYNLASLDGIGLPDVPL 348 Query: 256 EKTAAAAAISYIKKTQMVNKPT---IGYPEREDIQSTLFIDSAARSNLEILRTL-SGSRE 311 A + Y+ TQ + + P TL +D+ R NLE+ T G + Sbjct: 349 ALQAIGGLLQYVGDTQPLEDNAWVPLDVPAIVHSGDTLVLDAQTRRNLELTSTQRDGLLQ 408 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 SLL ID ++T GGR I +PL D I R ++ ++ L ++++L+ Sbjct: 409 GSLLWAIDRTLTAMGGRCLRRWIEAPLMDRAAIQQRQTVVSSLVKKRPLRQMLRRLLRPM 468 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDL---PEELRGAVEKLKKLP 428 D+ R R G +D+ I DG+ I L LK L P L + +L Sbjct: 469 GDLERLAGRAGAGHAGARDLVAIADGLER-IPKLAGQLKGQLTDGPAWLNALFDPQPQL- 526 Query: 429 QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 Q L ++S L + P +GG + DG D LD R+ D +A + + + + I Sbjct: 527 QDLAASVSHTLMEAPPLSLSEGGLIHDGVDPLLDGLRNQLDDQDAWLAQQEQQERQMSGI 586 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 L+++H+ GYF+ V+ + A+ + D +I RQT++N RF T +L + E RI Sbjct: 587 STLRLQHHRTFGYFLAVSKAKAATVP------DHWIRRQTLANEERFITPDLKEREGRIF 640 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 + A E E F L + + S+ A++ +A +D LA +A N+ P + N Sbjct: 641 QLRSRACQREYELFVQLREQVGAMATSIREAARAVAGLDALAGLADVAATSNFAAPELTN 700 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 S + RHP+VE+ L + PF ND L N L +LTGPN GKS +LR Sbjct: 701 SRELTLSAARHPVVEQLLVE---TPFTPNDVALG-----NGTDLVVLTGPNASGKSCYLR 752 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q LI ++AQ+GS+VPA A +GI D++F+RVG+ D+LA+G+STFMVEM ETA+IL+ AT Sbjct: 753 QIGLIQLLAQIGSWVPARQARVGIADRIFTRVGAVDDLAAGQSTFMVEMAETANILHHAT 812 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA 788 +S V+LDEIGRGTAT DGLSIAWA E+L + R + ATH+HEL L+ + N Sbjct: 813 ERSLVLLDEIGRGTATFDGLSIAWAVSEHLAGDLQSRSVFATHYHELNALAGERENVANF 872 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 + V ++ + ++FLH+V PG A SYGI+ +LAG+P V+ RA +L Sbjct: 873 QVLVEETGDDLLFLHQVHPGGASRSYGIEAARLAGVPVAVVQRARQVL 920 >gi|227903306|ref|ZP_04021111.1| DNA mismatch repair protein [Lactobacillus acidophilus ATCC 4796] gi|227868935|gb|EEJ76356.1| DNA mismatch repair protein [Lactobacillus acidophilus ATCC 4796] Length = 851 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 260/799 (32%), Positives = 435/799 (54%), Gaps = 36/799 (4%) Query: 45 FYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHR 104 FYR+GDFYELF +DA+ ++ L +TLT R IPM GVP + Y+ L++ G++ Sbjct: 13 FYRVGDFYELFEEDAVKGAQILELTLTHRSNKTKNPIPMAGVPHMAVDTYVNTLVEKGYK 72 Query: 105 IAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWA 164 +A+CEQ+E P +AK +V+R +++LVTPGT+ + DSNYL +V + Sbjct: 73 VALCEQLEDPKKAK-----GMVKRGIIQLVTPGTMMSEGPNDAKDSNYLTSVVTTEKGFG 127 Query: 165 IAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQ 223 +A+ D+STG ++ + + + ++++ + RE++++ E F N+ V+ Sbjct: 128 VAYSDLSTGEVYATHLKSFEAVSNELLSLRTREVVYNG---PLTEQNKEFMHKANITVSS 184 Query: 224 PNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPER 283 P S + N+T + EK A + Y+ TQ + + + Sbjct: 185 PTPIEGEHAEISYVGQ--NLT--------NSAEKKATEQLVGYLLSTQKRSLAHLQVAKS 234 Query: 284 EDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDST 342 ++ L + ++NLE++ + +G + SL +D + T GGRL + +A PL + Sbjct: 235 YEVNQYLQMSHTVQNNLELVASAKTGKKMGSLFWVLDKTHTAMGGRLLKQWLARPLLNVD 294 Query: 343 KINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGI 402 +IN R + + LK D+ R R+ G +++ + + + Sbjct: 295 EINHREEMVQALFDGYFTRENAIDALKGVYDLERLTGRIAFGNVNARELLQLSRSLEAVP 354 Query: 403 NILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLD 462 IL+ ++D + L+ +K+ L + + + +++ + D P +GG +R+G D LD Sbjct: 355 TILDALDQSD-SDVLKEFAQKIDPL-KGVAELITTTIVKDPPLLTTEGGLIREGVDKQLD 412 Query: 463 ETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDR 522 R + K+ +A ++ ++T I+NLK+ +N GY+I+V++ + K+ DR Sbjct: 413 RYRDAMNNGKKWLAQMEADERQKTGIENLKVGYNKVFGYYIQVSNGN-----KNKVPLDR 467 Query: 523 FIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQV 582 + +QT++N R+ T EL + EN I A + +E + F L + + +L Sbjct: 468 YTRKQTLTNAERYITPELKEHENLILEAQTRSTDLEYDLFVRLREEVKKYIPALQKLGSQ 527 Query: 583 IAIIDISIALAILAKEQNYCRPIIDNSTNFI-VKDGRHPIVEKTLKQQSSKPFIANDCDL 641 +A +D+ A +A++ NYCRP I V +GRHP+VEK + ++ +I N ++ Sbjct: 528 LAALDVFCGFASVAEQNNYCRPSFHTDNQDIDVVNGRHPVVEKVM---TAGSYIPNSVEM 584 Query: 642 SCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVG 701 +S ++L+TGPNM GKST++RQ ALI IMAQ+GS+VPA A + I D++F+R+G Sbjct: 585 D-----SSTNIYLITGPNMSGKSTYMRQMALIAIMAQVGSFVPADSADLPIFDQIFTRIG 639 Query: 702 SADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHET 761 +AD+L SG+STFMVEM E L AT +S V+ DEIGRGTAT D +++A A ++YLH+ Sbjct: 640 AADDLISGQSTFMVEMSEANDALQYATKRSLVLFDEIGRGTATYDCMALAGAIVKYLHDK 699 Query: 762 NRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKL 821 + ATH+HELTDL ++L N + ++ N +IFLHK++PG AD SYGI V +L Sbjct: 700 VGAKAFFATHYHELTDLDETLDHLKNIHVGATEENGKLIFLHKILPGPADQSYGIHVAQL 759 Query: 822 AGLPNTVISRAYDILKTFE 840 AGLP +V+ A +LK E Sbjct: 760 AGLPKSVLREATKLLKRLE 778 >gi|225551681|ref|ZP_03772625.1| DNA mismatch repair protein MutS [Borrelia sp. SV1] gi|225371708|gb|EEH01134.1| DNA mismatch repair protein MutS [Borrelia sp. SV1] Length = 862 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 284/825 (34%), Positives = 458/825 (55%), Gaps = 49/825 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K+ TPM+RQY++IK D+++F+R+G FYE+FFDDA+ S+ L +TLTKR +++P Sbjct: 3 KNVTPMIRQYLDIKKKYKDAVLFFRVGSFYEMFFDDAIEVSKLLNLTLTKR-----ENVP 57 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP HT+ YI+KLI ++AICEQ A + + R VV ++TPG + ++ Sbjct: 58 MCGVPYHTSKEYIRKLILFDKKVAICEQ------ASNSTSGGPLEREVVEVITPGVIIDE 111 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDIST---GIFKISTSNHDRLISDIMRIDPREIIF 199 L+ +NYL+A++ + ++ ++ID+ST GI ++L D+ + P+EII Sbjct: 112 DFLNDDINNYLVAISDYKDYYSFSYIDLSTSSLGIMFYENGFFEKLKRDLEKYSPKEIIV 171 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 SE + EY + P D I+ I +++NI + + G F + EK Sbjct: 172 SEN--FYYEYSEKLNLSRFLINRVPTWHLDKDIAIKTIKEHFNILGLSSLG-FDE-EKPY 227 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQ---STLFIDSAARSNLEILRTLSG-SREQSLL 315 + I + K + ++ DI S +F+D + NLE+++ + S + SL Sbjct: 228 YISIFLIINHIKNNLKNLLSNIDKIDINNDSSYMFLDDVTQVNLELVKNNNDFSSQYSLY 287 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 ++ T G RL E I +P+ + ++INTRLD + FF +N L +++ + D+ Sbjct: 288 SVLNDCKTAMGKRLLREFILNPILNISEINTRLDHVEFFCKNISLTVTLRETFINIWDIE 347 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEK--LKKLPQSLEK 433 R +SR+++ R KD I + + LF K++ E+ + K+ + Sbjct: 348 RIISRIQMKRYIKKDFLFIEKALSVFFTVKKLFDKHNFDYWNFDKFEEDSISKVYFLINS 407 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 +SS D+L ++ G D LD + L+ + + I +KI NLKI Sbjct: 408 AISSA-PDEL---------IKRGYDLKLDNLKDLKINANKYIDQYLESERLLSKINNLKI 457 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 + NN G F EVT S+ + + FI Q +++ R+ T +LI LE I NA ++ Sbjct: 458 RKTNNRGLFFEVTKSNYA------QVPPHFIESQALNSSKRYKTEKLISLEVDINNAEDN 511 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + E E F+ +++ ++ ++ L ++ A ID+ + LAK+ Y RP++ + + Sbjct: 512 VVAFEQEIFDEIASNVVMHNKVLKKVAEFFAYIDLVVNFGYLAKKNEYKRPVLTSGKEIL 571 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + RHP+VE +K +++ F N + DK L+TGPNM GKST+LRQ ALI Sbjct: 572 LDKSRHPVVEHYVK--NTEIFTENFVRI----DK-EKYFCLITGPNMAGKSTYLRQVALI 624 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MA +GS+VPAS A IGI DK+F R+G++DN+A G STF+VEM ETA+IL AT +S + Sbjct: 625 TLMAHIGSFVPASKALIGITDKIFCRIGASDNIAKGESTFLVEMNETANILRNATEKSLI 684 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 I+DE+GRGT+T DGL+IA++ IEY+ E + R L ATHFHEL+ ++ K F N ++++ Sbjct: 685 IMDEVGRGTSTNDGLAIAYSIIEYILEYIKARSLFATHFHELSSINH--KAFINLSMKIE 742 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKT 838 ++FL +V + +SYGI V ++AGLP VI RA IL++ Sbjct: 743 KQGNDLVFLREVEEKPSLNSYGIYVARIAGLPLRVIDRANVILES 787 >gi|260424691|ref|ZP_05732975.2| DNA mismatch repair protein MutS [Dialister invisus DSM 15470] gi|260402860|gb|EEW96407.1| DNA mismatch repair protein MutS [Dialister invisus DSM 15470] Length = 855 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 280/837 (33%), Positives = 463/837 (55%), Gaps = 59/837 (7%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 + + +P+M QY IK+ + D+ +FYR+GDFYELF+DDA+ S L +TLT GK+ G + Sbjct: 3 QMAAKSPLMEQYKSIKNEHKDAFLFYRLGDFYELFYDDAVTVSHELELTLT--GKNAGPE 60 Query: 81 --IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 +PMCG+P H A YI +L++ G+++AICEQ+E P +AK LV+R+V+R+VTPGT Sbjct: 61 GRVPMCGIPYHAAETYIYRLVQKGYKVAICEQLEDPKKAK-----GLVKRDVIRIVTPGT 115 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTG--IFKISTSNHDR-LISDIMRI-DP 194 + + ++ +NYL + + DISTG + I +R D++ + P Sbjct: 116 ILFENSIADKSNNYLAYLYETDNDIDAVLADISTGECWWGIWDKKKEREAFFDMLSVYAP 175 Query: 195 REIIFSEKELSHAEYKSLFET-LGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS 253 E + S + + ++ LG + + D+ + +A+ + ++ Sbjct: 176 TEAVCSLSDNFYGRLEAYCRARLGGCLLTRRGEEGDYPVP--HVAEALGDENIRCVFAW- 232 Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQ 312 AA + + K T+ P RE + L + NLEI R + G R Sbjct: 233 ------LAAYLKEMMKADAAEFHTV-MPIRE--EDCLLLGEDCLRNLEITRNMRDGGRRG 283 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 +LL+ +D++ T G RL + PLTD +I R D I + ++ ++++L+ Sbjct: 284 TLLEILDHTHTAMGARLLRRWLERPLTDVNRIIQRQDGIEELTGHTTELSQLEEMLEHVF 343 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVE-KLKKLPQSL 431 D R L+R++ PKD+ ++ +L + ++ + L G V L+KL + Sbjct: 344 DFERILTRIEANTTSPKDLLALK---------ASLGMIPEIKKLLSGTVSIVLRKLSDQM 394 Query: 432 E------KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE 485 + + L ++++ RDG ++++G A LDE RSL + S++ IA L+ + E+ Sbjct: 395 DIHSTVYELLDRSMNENGTGNIRDGKYIKEGYSAELDEVRSLSENSRKWIADLEEREKEK 454 Query: 486 TKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 T IK LKI NN GY+ E+T+++ + + ++ +QT+ N R+ T EL + E Sbjct: 455 TGIK-LKIGFNNVFGYYFEITNANKVPIP------EYYMRKQTLVNAERYITPELKEFET 507 Query: 546 RITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPI 605 + +A +EL+ ++ + AI + ++ ++ +A +D L+ A + Y RP Sbjct: 508 KALSAKEKTEELELKIYQAVKAAIRPEIAAMQRTAKALAALDCLTGLSRAALKDRYVRPQ 567 Query: 606 IDNSTN--FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 I NS + DGRHP+VE LK++ F+ ND +L + ++ ++TGPNM GK Sbjct: 568 ITNSREGRISIHDGRHPMVEHALKREM---FVPNDTEL----NHTDQEMIIITGPNMAGK 620 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 ST++RQ A++ IMAQ GS++PA A VD++F+RVG+AD++++G+STFMVEM E + I Sbjct: 621 STYMRQVAVLTIMAQTGSFIPAKSASFAPVDRIFTRVGAADDISTGQSTFMVEMKEVSHI 680 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLK 783 L AT S ++LDEIGRGT+T DG+SIA A +EYL+ L ATH+HEL+D++ + Sbjct: 681 LCNATKNSLILLDEIGRGTSTYDGMSIARAVVEYLNSKVHAYTLFATHYHELSDMAAENE 740 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 N T+ V + + I FL +++PG AD SYGI V +LAGLP +++ RA +IL+ E Sbjct: 741 HIKNYTVTVKERGKEITFLRRIVPGSADKSYGIHVARLAGLPESLLKRADEILEGLE 797 >gi|254369003|ref|ZP_04985016.1| DNA mismatch repair protein MutS [Francisella tularensis subsp. holarctica FSC022] gi|157121924|gb|EDO66094.1| DNA mismatch repair protein MutS [Francisella tularensis subsp. holarctica FSC022] Length = 855 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 298/897 (33%), Positives = 480/897 (53%), Gaps = 74/897 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +++ + TPM++QY++IKS D L+FYRMGDFYELFFDDA A+ L ITLT RGK G+ Sbjct: 13 QDISNHTPMIQQYLKIKSQYQDILLFYRMGDFYELFFDDAKKAAELLDITLTARGKSNGE 72 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H A YI K++K G IAICEQ P +K V R V R++TP T+ Sbjct: 73 SIPMAGVPYHAAEAYIAKIVKKGLSIAICEQTGDP-----NTSKGPVERQVTRIITPATV 127 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKIST-SNHDRLISDIMRIDPREI 197 +E+ L + L+++ ++ +A+ + G I+ + T ++ + L + ++++ P+EI Sbjct: 128 SEEAFLDNNQDSILVSIFEKNNKYYLAYTSYTQGKIYLVKTLTSLNELKNTVLKLSPQEI 187 Query: 198 IFSEKELSHAE------------YKSLFETLGNVAVAQPNVFFDHSISESRIADYYN--I 243 I + +EL+ Y S FE A N D +I+ + + Y N + Sbjct: 188 ITNSRELAQQNPFKKPIKALEEWYYSNFE-----AKKYINDSLDTNIANNILNLYKNDQL 242 Query: 244 TTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEIL 303 TT+ + S+ ++ I K + I Y + +D TL ID +R NLE Sbjct: 243 TTIGSILSY-----------LTNILKDTPRHITDISYEQEQD---TLNIDINSRINLE-- 286 Query: 304 RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINP 363 L + + SLL I T G RL ++P + + TR IN +N + Sbjct: 287 --LDNNSKSSLLSIIGKCKTSLGSRLLKRYFSNPTRNLNILATRHSIINSLGENQHFLK- 343 Query: 364 IQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAV 421 IQ +L D+ R +SR+ +G +PKD+ +RD + + L + + PE + + Sbjct: 344 IQDVLSYISDIERIISRVALGTVKPKDLVALRDSLEQLPILKKLLSEKNTPEITNINNRI 403 Query: 422 EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLK 481 +L +L L+K + ++ PT RDGG +++G D LDE +S++D S + + Sbjct: 404 HQLDELVTLLDKAII----ENPPTTIRDGGVIKEGFDKELDELKSIKDNSYDFLIKFEEL 459 Query: 482 YAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELI 541 ++T I LK+ +N GY+IE++ A + + ++ RQT+ R+ T EL Sbjct: 460 QKQKTGISTLKVGYNRVHGYYIELSKQHADKIPTE------YVRRQTLKASERYITEELK 513 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 + E+++ ++ AL E ++ L +IE + + + IA ID+ A A + Sbjct: 514 NFEDKVLSSKEKALAREKLIYDTLLKKVIEYYKQIQETAASIAEIDVLANFAERAIKLKL 573 Query: 602 CRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 +P +N +K+ RH +E + + PFI ND LS K++ L ++TGPNMG Sbjct: 574 SQPKFNNLAKLELKEVRHLAIEHNIDE----PFIPNDTLLS----KDTNTLQIITGPNMG 625 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKST++RQ A ++ +A +GS+VPASYA I +D +++R+G++D+++SGRSTFMVEM ETA Sbjct: 626 GKSTYMRQVAQLIFLAYIGSFVPASYADICDIDTIYTRIGASDDISSGRSTFMVEMTETA 685 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS 781 ILN A+ +S VI+DEIGRGT+T DGL++A A E + L ATH+ ELT+L+K Sbjct: 686 YILNNASAKSLVIMDEIGRGTSTFDGLALAKACAEKFAQIG-AFTLFATHYFELTELAKQ 744 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 N + + + I F+HK + G A SYGIQV KLAG+ V+ A + Sbjct: 745 YPNVCNIHFEAKEYKDNIYFMHKAVTGAAKKSYGIQVAKLAGISQDVLESAK------QN 798 Query: 842 LYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 LY+ +K ++Q + ++N +K+ ++++ ++PL AL L+ +K Sbjct: 799 LYNLEKKQQLTESTQVQAQFQLEPTTQNP--LQQKLDAIDINTITPLEALNILFELK 853 >gi|19746989|ref|NP_608125.1| DNA mismatch repair protein MutS [Streptococcus pyogenes MGAS8232] gi|25453124|sp|Q8NZ24|MUTS_STRP8 RecName: Full=DNA mismatch repair protein mutS gi|19749244|gb|AAL98624.1| putative DNA mismatch repair protein [Streptococcus pyogenes MGAS8232] Length = 851 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 279/880 (31%), Positives = 475/880 (53%), Gaps = 45/880 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYPDAFLLFRMGDFYELFYEDAVKAAQLLEIGLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI++G+++A+ EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPHHSAQQYIDVLIELGYKVAVAEQMEDPKQAV-----GVVKREVVQVITPGTVV-DSAK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKEL 204 + +N+L+AV + +A++D+STG F ++ ++ + S+I + +E++ +L Sbjct: 121 PDSANNFLVAVDFDGCRYGLAYMDVSTGEFCVTDLADFTSVRSEIQNLKAKEVLLG-FDL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E L + + + + V+ D S+ + G + VE TAA + Sbjct: 180 SEEEQTILVKQMNLLLSYEETVYEDKSLID---------------GQLTTVELTAAGKLL 224 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT 323 Y+ KTQM + +I+ L + A +S+L+++ +++ SL +D + T Sbjct: 225 QYVHKTQMRELSHLQALVHYEIKDYLQMSYATKSSLDLVENARTNKKHGSLYWLLDETKT 284 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL I PL I R + I F+ I + LK D+ R SR+ Sbjct: 285 AMGMRLLRSWIDRPLVSKEAILERQEIIQVFLNAFIERTDLSNSLKGVYDIERLSSRVSF 344 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 G+ PKD+ + + + + + L++ + V + LP+ LE + + + D Sbjct: 345 GKANPKDLLQLGHTL-AQVPYIKAILESFNSPCVDKLVNDIDSLPE-LEYLIRTAIDTDA 402 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P +G +R G D LD R + + IA ++ K + + I NLKI +N GY+ Sbjct: 403 PATISEGSIIRTGFDERLDHYRKVMREGTGWIADIEAKERQASGINNLKIDYNKKDGYYF 462 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 VT+S+ S++ + F + T+ N R+ T EL +E ++ A + +E + F Sbjct: 463 HVTTSNLSLVP------EHFFRKATLKNSERYGTAELAKIEGQMLEAREESSSLEYDIFM 516 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 + + L ++ +A +D+ +LA++A+ +Y RP +++ +++GRH +VE Sbjct: 517 CIRAQVETYINRLQKLAKTLATVDVLQSLAVVAETNHYIRPQFNDNHMITIQEGRHAVVE 576 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 K + Q +I N S D+ + + L+TGPNM GKST++RQ AL VIMAQMGS+V Sbjct: 577 KVMGVQE---YIPN----SISFDQQTS-IQLITGPNMSGKSTYMRQLALTVIMAQMGSFV 628 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 A + + + D +F+R+G+AD+L SG+STFMVEM+E + +A++ S ++ DE+GRGTA Sbjct: 629 AADHVDLPLFDAIFTRIGAADDLISGQSTFMVEMMEANQAIKRASDNSLILFDELGRGTA 688 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DG+++A A IEY+H+ + + ATH+HELTDLS L N + + + + FLH Sbjct: 689 TYDGMALAQAIIEYIHDRVGAKTIFATHYHELTDLSTKLTSLVNVHVATLEKDGDVTFLH 748 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ--KDMRLYYPEIQTKE 861 K+ G AD SYGI V K+AGLP +++ RA ++L E + P +E Sbjct: 749 KIAEGPADKSYGIHVAKIAGLPKSLLKRADEVLIRLETQSRSTEIISVPSKVEPSSAARE 808 Query: 862 SKNNLSKND---KLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + +L ++ + + ++ +++ M+PL A+ TLY +K Sbjct: 809 GQLSLFPDEDKSQEIIHTLEAIDVMNMTPLQAMTTLYELK 848 >gi|87160655|ref|YP_493885.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87126629|gb|ABD21143.1| DNA mismatch repair protein mutS [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|269940786|emb|CBI49168.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus TW20] gi|312829689|emb|CBX34531.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus ECT-R 2] Length = 840 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 298/880 (33%), Positives = 464/880 (52%), Gaps = 87/880 (9%) Query: 54 LFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIES 113 +F++DA ASR L ITLTKR IPMCGVP H+A+ YI L+ G+++AICEQ+E Sbjct: 1 MFYEDAKEASRVLEITLTKRDAKKENPIPMCGVPYHSADSYIDTLVNNGYKVAICEQMED 60 Query: 114 PLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTG 173 P + K +VRR VVR+VTPGT+ E + +NY+++ + E A+++ D+STG Sbjct: 61 P-----KQTKGMVRREVVRIVTPGTVMEQGGVDDKQNNYILSFVMNQPEIALSYCDVSTG 115 Query: 174 IFKISTSNHD-RLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSI 232 K++ N + L+++I I+P E++ ++ +S + + + V + +S+ Sbjct: 116 ELKVTHFNDEATLLNEITTINPNEVVINDN-ISDNLKRQINMVTETITVRETLSSEIYSV 174 Query: 233 SESRIADYYNITTV-------DTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPERED 285 +++ Y T + S +E AAI Y+K Sbjct: 175 NQTEHKLMYQATQLLLDYIHHTQKRDLSHIEDVVQYAAIDYMK----------------- 217 Query: 286 IQSTLFIDSAARSNLEILRTLS-GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKI 344 +D A+ NLE+ ++ S++ +LL +D + T G R + I PL +I Sbjct: 218 ------MDFYAKRNLELTESIRLKSKKGTLLWLMDETKTPMGARRLKQWIDRPLISKEQI 271 Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 RLD ++ F + I + ++ L D+ R + R+ G +D+ ++ I NI Sbjct: 272 EARLDIVDEFSAHFIERDTLRTYLNQVYDIERLVGRVSYGNVNARDLIQLKHSISEIPNI 331 Query: 405 LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDET 464 L N + + V +L+ L L+ L L ++ P +DGG + G + LDE Sbjct: 332 KALL--NSMNQNTLVQVNQLEPLDDLLD-ILEQSLVEEPPISVKDGGLFKVGFNTQLDEY 388 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 K +A LQ K + T IK+LKI N GYFIE+T ++ L+ S+ ++ Sbjct: 389 LEASKNGKTWLAELQAKERQRTGIKSLKISFNKVFGYFIEITRAN---LQNFEPSEFGYM 445 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 +QT+SN RF T EL + E+ I A + A+ +E + F L + + +E L +++I+ Sbjct: 446 RKQTLSNAERFITDELKEKEDIILGAEDKAIELEYQLFVQLREEVKKYTERLQQQAKIIS 505 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 +D + A +A++ NY RP + + + RHP+VE+ + ++ N+C L Sbjct: 506 ELDCLQSFAEIAQKYNYTRPSFSENKTLELVESRHPVVERVM---DYNDYVPNNCRLD-- 560 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 N ++L+TGPNM GKST++RQ A+I IMAQMG+YVP A + I D++F+R+G+AD Sbjct: 561 ---NETFIYLITGPNMSGKSTYMRQVAIISIMAQMGAYVPCKEAVLPIFDQIFTRIGAAD 617 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 +L SG+STFMVEM+E L AT S +I DEIGRGT+T DGL++A A IEY+ ET+ Sbjct: 618 DLVSGKSTFMVEMLEAQKALTYATEDSLIIFDEIGRGTSTYDGLALAQAMIEYVAETSHA 677 Query: 765 RGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGL 824 + L +TH+HELT L ++L N + ++ +IFLHKV G D SYGIQV KLA L Sbjct: 678 KTLFSTHYHELTTLDQALPSLKNVHVAANEYKGELIFLHKVKDGAVDDSYGIQVAKLADL 737 Query: 825 PNTVISRAYDILKTFE------------KLYHH----NQKDMRLYYPEIQTKESKNNLSK 868 P VISRA IL FE K+ + NQ+++ L +E+ + LS+ Sbjct: 738 PEKVISRAQVILSEFEASAGKKSSISNLKMVENEPEINQENLNL-----SVEETTDTLSQ 792 Query: 869 ND------KLF-------VE-KIKCLNLDEMSPLTALKTL 894 D LF +E +IK LNL M+P+ AL L Sbjct: 793 KDFEQASFDLFENDQESEIELQIKNLNLSNMTPIEALVKL 832 >gi|134301816|ref|YP_001121784.1| DNA mismatch repair protein MutS [Francisella tularensis subsp. tularensis WY96-3418] gi|189030719|sp|A4IXL2|MUTS_FRATW RecName: Full=DNA mismatch repair protein mutS gi|134049593|gb|ABO46664.1| DNA mismatch repair protein MutS [Francisella tularensis subsp. tularensis WY96-3418] Length = 844 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 298/897 (33%), Positives = 479/897 (53%), Gaps = 74/897 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +++ + TPM++QY++IKS D L+FYRMGDFYELFFDDA A+ L ITLT RGK G+ Sbjct: 2 QDISNHTPMIQQYLKIKSQYQDILLFYRMGDFYELFFDDAKKAAELLDITLTARGKSNGE 61 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H A YI K++K G IAICEQ P +K V R V R++TP T+ Sbjct: 62 SIPMAGVPYHAAEAYIAKIVKKGLSIAICEQTGDP-----NTSKGPVERQVTRIITPATV 116 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKIST-SNHDRLISDIMRIDPREI 197 +E+ L + L+++ ++ +A+ + G I+ + T ++ + L + ++++ P+EI Sbjct: 117 SEEAFLDNNQDSILVSIFEKNNKYYLAYTSYTQGKIYLVKTLTSLNELKNTVLKLSPQEI 176 Query: 198 IFSEKELSHAE------------YKSLFETLGNVAVAQPNVFFDHSISESRIADYYN--I 243 I + EL+ Y S FE A N D +I+ + + Y N + Sbjct: 177 ITNSHELAQQNPFKKPIKALEEWYYSNFE-----AKKYINDSLDTNIANNILNLYKNDQL 231 Query: 244 TTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEIL 303 TT+ + S+ ++ I K + I Y + +D TL ID +R NLE Sbjct: 232 TTIGSILSY-----------LTNILKDTPRHITDISYEQEQD---TLNIDINSRINLE-- 275 Query: 304 RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINP 363 L + + SLL I T G RL ++P + + TR IN +N + Sbjct: 276 --LDNNSKSSLLSIIGKCKTSLGSRLLKRYFSNPTRNLNILATRHSIINSLGENQHFLK- 332 Query: 364 IQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAV 421 IQ +L D+ R +SR+ +G +PKD+ +RD + + L + + PE + + Sbjct: 333 IQDVLSYISDIERIISRVALGTVKPKDLVALRDSLEQLPILKKLLSEKNTPEITNINNRI 392 Query: 422 EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLK 481 +L +L L+K + ++ PT RDGG +++G D LDE +S++D S + + Sbjct: 393 HQLDELVTLLDKAII----ENPPTTIRDGGVIKEGFDKELDELKSIKDNSYDFLIKFEEL 448 Query: 482 YAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELI 541 ++T I LK+ +N GY+IE++ A + + ++ RQT+ R+ T EL Sbjct: 449 QKQKTGISTLKVGYNRVHGYYIELSKQHADKIPTE------YVRRQTLKASERYITEELK 502 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 + E+++ ++ AL E ++ L +IE + + + IA ID+ A A + Sbjct: 503 NFEDKVLSSKEKALAREKLIYDTLLKKVIEYYKQIQETAASIAEIDVLANFAERAIKLKL 562 Query: 602 CRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 +P +N +K+ RH +E + + PFI ND LS K++ L ++TGPNMG Sbjct: 563 SQPKFNNLAKLELKEVRHLAIEHNIDE----PFIPNDTLLS----KDTNTLQIITGPNMG 614 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKST++RQ A ++ +A +GS+VPASYA I +D +++R+G++D+++SGRSTFMVEM ETA Sbjct: 615 GKSTYMRQVAQLIFLAYIGSFVPASYADICDIDTIYTRIGASDDISSGRSTFMVEMTETA 674 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS 781 ILN A+ +S VI+DEIGRGT+T DGL++A A E + L ATH+ ELT+L+K Sbjct: 675 YILNNASAKSLVIMDEIGRGTSTFDGLALAKACAEKFAQIG-AFTLFATHYFELTELAKQ 733 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 N + + + I F+HK + G A SYGIQV KLAG+ V+ A + Sbjct: 734 YPNVCNIHFEAKEYKDNIYFMHKAVTGAAKKSYGIQVAKLAGISQDVLESAK------QN 787 Query: 842 LYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 LY+ +K ++Q + ++N +K+ ++++ ++PL AL L+ +K Sbjct: 788 LYNLEKKQQLTESTQVQAQFQLEPTTQNP--LQQKLDAIDINTITPLEALNILFELK 842 >gi|88195005|ref|YP_499805.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus NCTC 8325] gi|87202563|gb|ABD30373.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp. aureus NCTC 8325] Length = 840 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 298/880 (33%), Positives = 464/880 (52%), Gaps = 87/880 (9%) Query: 54 LFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIES 113 +F++DA ASR L ITLTKR IPMCGVP H+A+ YI L+ G+++AICEQ+E Sbjct: 1 MFYEDAKEASRVLEITLTKRDAKKENPIPMCGVPYHSADSYIDTLVNNGYKVAICEQMED 60 Query: 114 PLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTG 173 P + K +VRR VVR+VTPGT+ E + +NY+++ + E A+++ D+STG Sbjct: 61 P-----KQTKGMVRREVVRIVTPGTVMEQGGVDDKQNNYILSFVMNQPEIALSYCDVSTG 115 Query: 174 IFKISTSNHD-RLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSI 232 K++ N + L+++I I+P E++ ++ +S + + + V + +S+ Sbjct: 116 ELKVTHFNDEATLLNEITTINPNEVVINDN-ISDNLKRQINMVTETITVRETLSSEIYSV 174 Query: 233 SESRIADYYNITTV-------DTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPERED 285 +++ Y T + S +E AAI Y+K Sbjct: 175 NQTEHKLMYQATQLLLDYIHHTQKRDLSHIEDVVQYAAIDYMK----------------- 217 Query: 286 IQSTLFIDSAARSNLEILRTLS-GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKI 344 +D A+ NLE+ ++ S++ +LL +D + T G R + I PL +I Sbjct: 218 ------MDFYAKRNLELTESIRLKSKKGTLLWLMDETKTPMGARRLKQWIDRPLISKEQI 271 Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 RLD ++ F + I + ++ L D+ R + R+ G +D+ ++ I NI Sbjct: 272 EARLDIVDEFSAHFIERDTLRTYLNQVYDIERLVGRVSYGNVNARDLIQLKHSISEIPNI 331 Query: 405 LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDET 464 L N + + V +L+ L L+ L L ++ P +DGG + G + LDE Sbjct: 332 KALL--NSMNQNTLVQVNQLEPLDDLLD-ILEQSLVEEPPISVKDGGLFKVGFNTQLDEY 388 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 K +A LQ K + T IK+LKI N GYFIE+T ++ L+ S+ ++ Sbjct: 389 LEASKNGKTWLAELQAKERQRTGIKSLKISFNKVFGYFIEITRAN---LQNFEPSEFGYM 445 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 +QT+SN RF T EL + E+ I A + A+ +E + F L + + +E L +++I+ Sbjct: 446 RKQTLSNAERFITDELKEKEDIILGAEDKAIELEYQLFVQLREEVKKYTERLQQQAKIIS 505 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 +D + A +A++ NY RP + + + RHP+VE+ + ++ N+C L Sbjct: 506 ELDCLQSFAEIAQKYNYTRPSFSENKTLELVESRHPVVERVM---DYNDYVPNNCRLD-- 560 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 N ++L+TGPNM GKST++RQ A+I IMAQMG+YVP A + I D++F+R+G+AD Sbjct: 561 ---NETFIYLITGPNMSGKSTYMRQVAIISIMAQMGAYVPCKEAVLPIFDQIFTRIGAAD 617 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 +L SG+STFMVEM+E L AT S +I DEIGRGT+T DGL++A A IEY+ ET+ Sbjct: 618 DLVSGKSTFMVEMLEAQKALTYATEDSLIIFDEIGRGTSTYDGLALAQAMIEYVAETSHA 677 Query: 765 RGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGL 824 + L +TH+HELT L ++L N + ++ +IFLHKV G D SYGIQV KLA L Sbjct: 678 KTLFSTHYHELTTLDQALPSLKNVHVAANEYKGELIFLHKVKDGAVDDSYGIQVAKLADL 737 Query: 825 PNTVISRAYDILKTFE------------KLYHH----NQKDMRLYYPEIQTKESKNNLSK 868 P VISRA IL FE K+ + NQ+++ L +E+ + LS+ Sbjct: 738 PEKVISRAQVILSEFEASAGKKSSISNLKMVENEPEINQENLNL-----SVEETTDTLSQ 792 Query: 869 ND------KLF-------VE-KIKCLNLDEMSPLTALKTL 894 D LF +E +IK LNL M+P+ AL L Sbjct: 793 KDFEQASFDLFENDQKSEIELQIKNLNLSNMTPIEALVKL 832 >gi|224533450|ref|ZP_03674043.1| DNA mismatch repair protein MutS [Borrelia burgdorferi CA-11.2a] gi|224513412|gb|EEF83770.1| DNA mismatch repair protein MutS [Borrelia burgdorferi CA-11.2a] Length = 862 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 287/831 (34%), Positives = 466/831 (56%), Gaps = 61/831 (7%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K+ TPM+RQY++IK D+++F+R+G FYE+FFDDA+ S+ L +TLTKR +++P Sbjct: 3 KNVTPMIRQYLDIKKKYKDAVLFFRVGSFYEMFFDDAIEVSKLLNLTLTKR-----ENVP 57 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP HT+ YI+KLI ++AICEQ A + + R VV ++TPG + ++ Sbjct: 58 MCGVPYHTSKEYIRKLILFDKKVAICEQ------ASNSTSGGPLEREVVEVITPGVIIDE 111 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDIST---GIFKISTSNHDRLISDIMRIDPREIIF 199 L+ +NYL+A++ + ++ ++ID+ST GI ++L D+ + P+EII Sbjct: 112 DFLNDDINNYLVAISDYKDYYSFSYIDLSTSSLGIMFYENGFFEKLKRDLEKYSPKEIIV 171 Query: 200 SEK-ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 SE ++E +L L N P D I+ I +++NI + + G F + EK Sbjct: 172 SENFYYKYSEKLNLSRFLINRV---PTWHLDKDIAIKTIKEHFNILGLSSLG-FDE-EKP 226 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQ---STLFIDSAARSNLEILRTLSG-SREQSL 314 + I + K + ++ DI S +F+D + NLE+++ + S + SL Sbjct: 227 YYISIFLIINHIKNNLKNLLSNIDKIDINNDSSYMFLDDVTQVNLELVKNNNDFSSQYSL 286 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 ++ T G RL E I +P+ + ++INTRLD + FF +N L +++ + D+ Sbjct: 287 YSVLNDCKTAMGKRLLREFILNPILNISEINTRLDHVEFFCKNISLTVTLRETFINIWDI 346 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEK--LKKLPQSLE 432 R +SR+++ R KD I + + LF K++ E+ + K+ + Sbjct: 347 ERIISRIQMKRYIKKDFLFIEKALSVFFTVKKLFDKHNFDYWNFDKFEEDSISKVYFLIN 406 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE----TKI 488 +SS D+L ++ G D LD + L+ + + I +Y E +KI Sbjct: 407 SAISSA-PDEL---------IKRGYDLKLDNLKDLKINANKYID----QYLESERLLSKI 452 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 NLKI+ NN G F EVT S+ + + F+ Q +++ R+ T +LI LE I Sbjct: 453 NNLKIRKTNNRGLFFEVTKSNYA------QVPPHFMESQALNSSKRYKTEKLISLEVDIN 506 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 NA ++ + E E F+ +S+ ++ ++ L ++ A ID+ + LAK+ Y RP++ + Sbjct: 507 NAEDNVVAFEQEIFDEISSNVVMHNKVLKKVAEFFAYIDLVVNFGYLAKKNEYKRPVLTS 566 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLW-LLTGPNMGGKSTFL 667 +++ RHP+VE+ K +++ F N + N K + L+TGPNM GKST+L Sbjct: 567 GKEILLEKSRHPVVERYTK--NTEIFTENFVRI------NKEKYFCLITGPNMAGKSTYL 618 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ ALI +MA +GS+VPAS A IGI DK+F R+G++DN+A G STF+VEM ETA+IL A Sbjct: 619 RQVALITLMAHIGSFVPASKALIGITDKIFCRIGASDNIAKGESTFLVEMNETANILRNA 678 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 T +S +I+DE+GRGT+T DGL+IA++ IEY+ E + R L ATHFHEL+ ++ + F N Sbjct: 679 TEKSLIIMDEVGRGTSTNDGLAIAYSIIEYILEYIKARSLFATHFHELSSINH--QAFIN 736 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKT 838 ++++ ++FL +V + +SYGI V ++AGLP VI RA IL++ Sbjct: 737 LSMKIEKQGNDLVFLREVEEKPSLNSYGIYVARIAGLPLRVIDRANVILES 787 >gi|225869421|ref|YP_002745369.1| DNA mismatch repair protein MutS [Streptococcus equi subsp. zooepidemicus] gi|259511175|sp|C0MGC5|MUTS_STRS7 RecName: Full=DNA mismatch repair protein mutS gi|225702697|emb|CAX00811.1| DNA mismatch repair protein MutS [Streptococcus equi subsp. zooepidemicus] Length = 851 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 280/884 (31%), Positives = 473/884 (53%), Gaps = 53/884 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKNYPDAFLLFRMGDFYELFYEDAVKAAQILEIGLTSRNKNADNPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+ YI LI +GH++AI EQ+E P +A +V+R VV+++TPGT D Sbjct: 67 VPYHSVQQYIDVLIDLGHKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTAV-DSSR 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 + +N+L+AV + ++++D+STG F ++ + S+I + RE++ EL Sbjct: 121 PDSPNNFLVAVDFDGKAYGLSYMDVSTGEFFATDLADFASVKSEIQNLKAREVLLG-FEL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E L + + N+ ++ F ++ +S + D+ + VE +AA + Sbjct: 180 SEEEQAILVKQM-NLLLS----FETTALEDSPLIDH----------QLTAVELSAAGKLL 224 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSIT 323 Y+ +TQ+ + DI+ L + A +S+L++L +G + SL +D + T Sbjct: 225 HYVHQTQLRELSHLQTLVHYDIKDYLQMSYATKSSLDLLENARTGKKHGSLYWLLDETKT 284 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL I PL S I R + I F+ I + LK D+ R SR+ Sbjct: 285 AMGMRLLRAWIDRPLVTSEAILERQEIIQVFLNAFIERTDLSDSLKGVYDIERLSSRVSF 344 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 G+ PKD+ + + + + + L+ L V ++ LP+ LE + S + D Sbjct: 345 GKANPKDLLQLGHTL-AKVPYIKAVLEAFNSPYLDKLVNQIDTLPE-LEHLIRSAIDPDA 402 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P +G +R G D LD R + + IA ++ K + + I NLKI +N GY+ Sbjct: 403 PATINEGNIIRTGFDERLDHYRKVMREGTGWIADIETKERQASGISNLKIDYNKKDGYYF 462 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 VT+S+ ++ D F + T+ N R+ T EL +E ++ A + +E + F Sbjct: 463 HVTNSNLGMVP------DHFFRKATLKNSERYGTAELAKIEGQMLEAREESSSLEYDIFM 516 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 + + + L ++ +A +D+ +LA++A++ +Y RP+ + + + +GRH +VE Sbjct: 517 RIRAQVETYIDRLQQLAKALATVDVLQSLAVVAEKNHYVRPLFNQESRIAIDNGRHAVVE 576 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 K L Q +I N + L+TGPNM GKST++RQ AL VIMAQ+GS+V Sbjct: 577 KVLGVQE---YIPNSISFGPQT-----SIQLITGPNMSGKSTYMRQLALTVIMAQIGSFV 628 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 A A + + D +F+R+G+AD+L SG+STFMVEM+E + +AT S ++ DE+GRGTA Sbjct: 629 AAESASLPLFDAIFTRIGAADDLISGQSTFMVEMMEANHAIKRATPHSLILFDELGRGTA 688 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DG+++A + IEY+H+ + + ATH+HELT+LS L + N + + + + FLH Sbjct: 689 TYDGMALAQSIIEYIHDRVGAKTMFATHYHELTELSTKLTKLVNVHVATLEKDGNVTFLH 748 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESK 863 K+ G AD SYGI V ++AGLP +++RA +L E ++ L E+ +E++ Sbjct: 749 KIAEGPADKSYGIHVARIAGLPEDLLARADAVLTKLEA--QSQARESVLSTTEV--RETQ 804 Query: 864 NNLSKNDKLF---------VEKIKCLNLDEMSPLTALKTLYAVK 898 ++ LF +++++ +++ ++P+ A+ LY +K Sbjct: 805 QLANQQLSLFTDDGSSSEIIKRLESVDVMNLTPIQAMTVLYELK 848 >gi|78183665|ref|YP_376099.1| DNA mismatch repair protein MutS [Synechococcus sp. CC9902] gi|123582340|sp|Q3B0S2|MUTS_SYNS9 RecName: Full=DNA mismatch repair protein mutS gi|78167959|gb|ABB25056.1| DNA mismatch repair protein MutS [Synechococcus sp. CC9902] Length = 905 Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust. Identities = 283/829 (34%), Positives = 453/829 (54%), Gaps = 46/829 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TP++R Y+E+K +P+ ++ YR+GDF+E FF+DA+ SR L +TLT + GK +G+ +PM Sbjct: 100 TPVLRHYVELKMAHPERVLLYRLGDFFECFFEDAITLSRELELTLTGKDAGKAIGR-VPM 158 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G+P H A + LI++G+ +A+C+Q+E+ +G +L++R++ R++TPGT+ E+ Sbjct: 159 AGIPHHAAERHCSDLIRLGYSVALCDQLET---TPTKG--ALLKRDITRVLTPGTVLEEG 213 Query: 144 LLSPTDSNYLMAVA------RIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPRE 196 +L+ +N+L AV W +A D+STG ++ D L + R+ E Sbjct: 214 MLTARRNNWLAAVVVEPATQHQPFRWGLAQADVSTGDVQVLQREGSDGLHQHLARLQASE 273 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 +++S + + A + +G ++ + F +E+ + ++YN+ ++D G +V Sbjct: 274 LLWSGDDPAPAWCP---DRVGLTPMS--STPFSRPEAEAVLLEHYNLASLDGIG-LPEVP 327 Query: 257 KT--AAAAAISYIKKTQMVN---KPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSR 310 A + Y+ TQ + + + P +L +D+ R NLE+ T G Sbjct: 328 LALQAIGGLLQYVGDTQPLEDNARVPLDVPAIVHNGDSLVLDAQTRRNLELTATQRDGLL 387 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 + SLL ID ++T GGR I +PL D + I R ++ ++ L ++++L+ Sbjct: 388 QGSLLWAIDRTLTAMGGRCLRRWIEAPLMDRSAIQQRQTVVSRLVEKRPLRQTLRRLLRP 447 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI---LNLFLKNDLPEELRGAVEKLKKL 427 D+ R R G +D+ I DG+ + LN L D P L+ + +L Sbjct: 448 MGDLERLAGRAGAGHAGARDLVAIADGLERLPQLAAQLNGQL-TDGPAWLQALFDPQPQL 506 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 Q L T+S+ L + P +GGF+ DG D LD R+ D +A + + + + Sbjct: 507 -QELATTVSNTLKEAPPLSLSEGGFIHDGVDPLLDGLRNQLDDQDAWLAQQERQERQGSG 565 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 I L+++H+ GYF+ V+ + S + D +I RQT++N RF T EL + E I Sbjct: 566 ISTLRLQHHRTFGYFLAVSKAKTSSVP------DHWIRRQTLANEERFITPELKEREGHI 619 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 A E E F L + + S+ A++ +A +D LA +A N+C P + Sbjct: 620 FQLRARACQREYELFVQLREQVGLMATSIREAARAVAGLDALTGLADVAATSNFCAPELT 679 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 N+ + RHP+VE+ L + PF ND L N L +LTGPN GKS +L Sbjct: 680 NNRELTLSAARHPVVEQLLVE---TPFTPNDVALG-----NGRDLVVLTGPNASGKSCYL 731 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ LI ++AQ+GS+VPA A IGI D++F+RVG+ D+LA+G+STFMVEM ETA+IL+ A Sbjct: 732 RQIGLIQLLAQVGSWVPAKEAKIGIADRIFTRVGAVDDLAAGQSTFMVEMAETANILHHA 791 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 T++S V+LDEIGRGTAT DGLSIAWA E+L + R + ATH+HEL L+ N Sbjct: 792 TSRSLVLLDEIGRGTATFDGLSIAWAVSEHLAGDLKARTVFATHYHELNALAGERDNVAN 851 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 + V ++ + ++FLH+V PG A SYGI+ +LAG+P V+ RA +L Sbjct: 852 FQVMVEETGDNLLFLHQVRPGGASRSYGIEAARLAGVPMAVVQRAQQVL 900 >gi|332678795|gb|AEE87924.1| DNA mismatch repair protein MutS [Francisella cf. novicida Fx1] Length = 844 Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust. Identities = 298/897 (33%), Positives = 478/897 (53%), Gaps = 74/897 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +++ + TPM++QY++IKS D L+FYRMGDFYELFFDDA A+ L ITLT RGK G+ Sbjct: 2 QDISNHTPMIQQYLKIKSQYQDILLFYRMGDFYELFFDDAKKAAELLDITLTARGKSNGE 61 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H A YI K++K G IAICEQ P +K V R V R++TP T+ Sbjct: 62 SIPMAGVPYHAAEAYIAKIVKKGLSIAICEQTGDP-----NTSKGPVERQVTRIITPATV 116 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKIST-SNHDRLISDIMRIDPREI 197 +E+ L + L+++ ++ +A+ + G I+ + T ++ + L + ++++ P+EI Sbjct: 117 SEEAFLDSNQDSILVSIFEKNNKYYLAYTSYTQGKIYLVKTLTSLNELKNTVLKLSPQEI 176 Query: 198 IFSEKELSHAE------------YKSLFETLGNVAVAQPNVFFDHSISESRIADYYN--I 243 I + +EL+ Y S FE A N D +I+ + + Y N + Sbjct: 177 ITNSRELAQQNPFKKPIKALEEWYYSNFE-----AKKYINDSLDTNIANNILNLYKNDQL 231 Query: 244 TTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEIL 303 TT+ + S+ ++ I K + I Y + +D TL ID +R NLE Sbjct: 232 TTIGSILSY-----------LTNILKDTPRHITDISYEQEQD---TLNIDINSRINLE-- 275 Query: 304 RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINP 363 L + + SLL I T G RL ++P + + TR + IN +N + Sbjct: 276 --LDNNSKSSLLSIIGKCKTSLGSRLIKRYFSNPTRNLNILATRHNIINSLGENQYFLK- 332 Query: 364 IQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAV 421 IQ +L D+ R +SR+ +G +PKD+ + D + + L + + PE + + Sbjct: 333 IQDVLSYISDIERIISRVALGTVKPKDLVALHDSLEQLPILKKLLSEKNTPEITNINNRI 392 Query: 422 EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLK 481 +L +L L+K + ++ P RDGG +++G D LDE +S++D S + + Sbjct: 393 HQLDELVTLLDKAII----ENPPATIRDGGVIKEGFDKELDELKSIKDNSYDFLIKFEEL 448 Query: 482 YAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELI 541 ++T I LK+ +N GY+IE++ A + + ++ RQT+ R+ T EL Sbjct: 449 QKQKTGISTLKVGYNRVHGYYIELSKQHADKIPTE------YVRRQTLKASERYITEELK 502 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 + E+++ ++ AL E ++ L +IE + + + IA ID+ A A + Sbjct: 503 NFEDKVLSSKEKALAREKLIYDTLLKKVIEYYKQIQETAASIAEIDVLANFAERAIKLKL 562 Query: 602 CRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 +P +N +K+ RH +E + + PFI ND LS K++ L ++TGPNMG Sbjct: 563 SQPKFNNLAKLELKEVRHLAIEHNIDE----PFIPNDTLLS----KDTNTLQIITGPNMG 614 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKST++RQ A ++ +A +GS+VPASYA I +D +++R+G++D+++SGRSTFMVEM ETA Sbjct: 615 GKSTYMRQVAQLIFLAYIGSFVPASYADICDIDTIYTRIGASDDISSGRSTFMVEMTETA 674 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS 781 ILN A+ +S VI+DEIGRGT+T DGL++A A E + L ATH+ ELT+L+K Sbjct: 675 YILNNASAKSLVIMDEIGRGTSTFDGLALAKACAEKFAQIG-AFTLFATHYFELTELAKQ 733 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 N + + + I F+HK + G A SYGIQV KLAG+ V+ A L EK Sbjct: 734 YPNVCNIHFEAKEYKDNIYFMHKAVTGAAKKSYGIQVAKLAGISQDVLESAKQNLYNLEK 793 Query: 842 LYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 H + +IQ + ++N +K+ ++++ ++PL AL L+ +K Sbjct: 794 KQHLAES------TQIQAQFELEPTTQNP--LQQKLDAIDINTITPLEALNILFELK 842 >gi|297623073|ref|YP_003704507.1| DNA mismatch repair protein MutS [Truepera radiovictrix DSM 17093] gi|297164253|gb|ADI13964.1| DNA mismatch repair protein MutS [Truepera radiovictrix DSM 17093] Length = 843 Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust. Identities = 289/880 (32%), Positives = 468/880 (53%), Gaps = 68/880 (7%) Query: 27 PMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI--PMC 84 P++ QY+E++ PD LV +++GDFYE F +DA +R + ITLT + KD PM Sbjct: 13 PLLAQYVELRERYPDYLVLFQVGDFYETFGEDAERLARAINITLTHKTS---KDFVTPMA 69 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G+PV +A+ Y++KL+ +AI +Q+ESP +A LVRR+V +L+TPGT+T+D+L Sbjct: 70 GIPVRSADSYLEKLLAQNICVAIADQLESPADAD-----GLVRRDVTQLITPGTVTDDKL 124 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFK-ISTSNHDRLISDIMRIDPREIIFSEKE 203 L P D+ YL AVA + +A +D+STG F+ + L ++ R P E++ + + Sbjct: 125 LRP-DATYLAAVA-TGEGYGLALLDLSTGEFRGTQLYSKAALFDELRRYRPAELLLAPEL 182 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNI--TTVDTFGSFSQVEKTAAA 261 + ++ +V V + FD S ++ +A ++ T +DT AA Sbjct: 183 HAQESFREGCCERFSVMVTRGR--FDESEAQGALAGHFGALPTGLDTAALLR-----AAG 235 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS---GSREQSLLKTI 318 A +SY + TQ P + R D + + + A + LE+ RT G ++LL + Sbjct: 236 AVLSYARHTQRGKLPQVTRFVRYDPSAYMQLGETALATLEVFRTAHAALGEGGRTLLSIL 295 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D + T G RL + PL D I RL ++ F+Q+ +L ++K L D+ R Sbjct: 296 DATRTAPGRRLLQAWLRHPLLDRELIEARLGAVEAFVQDGVLRREVRKALFKMHDLERLA 355 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 S+L R +D+ + + + + L L L E+L+ +P+ + + + + Sbjct: 356 SKLVTERANARDLCALARSL-ALVPELRRLLGARGERALAALGERLR-VPEGVCERVGAA 413 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 L DD P +GG +R G D LD R+ + ++ IA+L+ + T I LKI N Sbjct: 414 LVDDPPLKITEGGLIRSGFDRELDGLRARAEDARAWIAALEAEERAATGIPTLKIGFNGV 473 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY++EVT + + QT+ + R+ +L + E I +A E Sbjct: 474 FGYYLEVTRPYLERVPPSYRAV------QTLKDRQRYVRDDLREREREILRFEAAAKGRE 527 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 E F +L + ++++ + +A +D+ ALA +A E +CRP ++ GR Sbjct: 528 YEVFGLLRGELAAAADAVRDLGAALAELDVYSALAEVAAEGRFCRPTFSEGA-LEIRAGR 586 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ PFI ND +S P+++ L +LTGPNM GKST+LRQ+ALI ++AQ Sbjct: 587 HPVVERF------HPFIPNDLTMS-PSER----LLILTGPNMSGKSTYLRQSALIALLAQ 635 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA A + + +++++R+G++D++A GRSTFMVEM E A+IL AT +S V+LDEI Sbjct: 636 IGSFVPAERAVLPLFERIYTRIGASDDIAGGRSTFMVEMSELATILQNATPKSLVLLDEI 695 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGL++AWA EYL L ATH+ ELT L L N + + G Sbjct: 696 GRGTSTFDGLALAWAAAEYLEARTGAYVLFATHYFELTALEGRLASARNLHVAAKEEAGG 755 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 + F H+V+PG A +YG++V KLAG+P V++RA +L+ E Sbjct: 756 LTFYHQVLPGPASKAYGLEVAKLAGVPAKVLARARALLEGLEA----------------- 798 Query: 859 TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++N+ +K V+ + +++ +SPL AL+ LY ++ Sbjct: 799 ---TRNDQAKG---VVDALLAVDVSRLSPLEALQLLYELQ 832 >gi|15789484|ref|NP_279308.1| DNA mismatch repair protein MutS [Halobacterium sp. NRC-1] gi|169235200|ref|YP_001688400.1| DNA mismatch repair protein MutS [Halobacterium salinarum R1] gi|44888241|sp|Q9HSL6|MUTS2_HALSA RecName: Full=DNA mismatch repair protein mutS 2 gi|189030429|sp|B0R2T7|MUTS2_HALS3 RecName: Full=DNA mismatch repair protein mutS 2 gi|10579820|gb|AAG18788.1| mismatch repair protein [Halobacterium sp. NRC-1] gi|167726266|emb|CAP13047.1| DNA mismatch repair protein [Halobacterium salinarum R1] Length = 863 Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust. Identities = 277/847 (32%), Positives = 443/847 (52%), Gaps = 53/847 (6%) Query: 1 MTKEFSSPQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDAL 60 M P + + + DL TPMM QY E+ D+LV +++GDFYELF A Sbjct: 1 MDAALGPPDAMAASEGDL-------TPMMSQYFELTRRYDDALVLFQVGDFYELFCAAAE 53 Query: 61 LASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR 120 A+R +TLT R G+ PM GVP+ TA YI+ L+ G+R+A+ +Q++ P E Sbjct: 54 TAARICEVTLTAREDSTGQ-YPMAGVPIDTAEPYIEALLDAGYRVAVADQVQDPDEVS-- 110 Query: 121 GNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIR---TEWAIAWIDISTG-IFK 176 +V R V R+VTPGT+TED+LL D+N++ A+A R + +A +D+STG + Sbjct: 111 ---GVVDRAVTRVVTPGTVTEDELLGGADNNFVAALAGGRDADAGFGLALLDVSTGDCYA 167 Query: 177 ISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESR 236 + R+ ++ R P E++ + F A + F+ + + R Sbjct: 168 TRLGDEARVRDELGRFTPAELVVGPGVDADRFADEAF------VAAYDDDAFEPAAARER 221 Query: 237 IADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPT-----IGYPEREDIQSTLF 291 +ADY+ V + E A A +SY + T+ + + + R L Sbjct: 222 VADYFGGEDV----LPTTAELRACGALLSYAEYTRGGAGDSQRLTYLNHVTRYSPTEHLQ 277 Query: 292 IDSAARSNLEIL--RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLD 349 +D+ A +LE+ R++ G+ +L+ +D + G R + + PL DS I R D Sbjct: 278 MDAVALRSLELFEQRSVHGTDGTALVDVLDETACALGRRKLTDWLRRPLVDSDAIAARHD 337 Query: 350 SINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFL 409 ++ + +P+ + + L+ D+ R +SR+ GR +D+ + D + + L Sbjct: 338 AVGELVADPLSREELHEHLRDVYDIERLVSRVSRGRANARDLRALADTLAVVPEVRGLLA 397 Query: 410 KNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRD 469 D +L+ E L LP+ + L + D P DGG +RDG D LD+ R+ Sbjct: 398 DAD-ARKLQSLREALDDLPE-IRGLLDRAIVADPPQELTDGGVIRDGYDERLDDLRATER 455 Query: 470 QSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTM 529 K+ + L+ E T + +LK+ N+ GY+IEVT ++ + +D + RQT+ Sbjct: 456 AGKQWVDDLEASERERTGVDSLKVGQNSVHGYYIEVTKANMDAVPED------YQRRQTL 509 Query: 530 SNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDIS 589 N R+ T EL + E I A A +E E F + + E +E + ++ +A +D Sbjct: 510 KNAERYVTPELKEREEEIVRAEQRAQDLEYELFVGIRERVAEAAERMQAVARALAAVDAL 569 Query: 590 IALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNS 649 + A +A +Y +P++ ++ GRHP+VE+T F+ ND L ND Sbjct: 570 ASFAAVAAAHDYTKPVM-GGDGIHIEGGRHPVVERT-----ESGFVPNDTTL---NDDR- 619 Query: 650 GKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASG 709 ++ ++TGPNM GKST++RQ A+IV++AQ G +VPA+ A + +VD++F+RVG++D++A G Sbjct: 620 -RVAVITGPNMSGKSTYMRQVAVIVVLAQAGCFVPAAAAELRVVDRVFTRVGASDDIAGG 678 Query: 710 RSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLA 769 RSTFMVEM E ASIL AT++S V+LDE+GRGTAT DGL+IA A E++H+ L A Sbjct: 679 RSTFMVEMTELASILRAATDESLVLLDEVGRGTATTDGLAIARAVTEHIHDAVGATTLFA 738 Query: 770 THFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVI 829 TH HELT + L N + ++G+ F H V G A SYG++V + AG+P V+ Sbjct: 739 THHHELTADADRLPDALNLHFAATRGDDGVAFEHAVRAGAATASYGVEVARTAGVPEPVV 798 Query: 830 SRAYDIL 836 RA ++L Sbjct: 799 DRARELL 805 >gi|183220240|ref|YP_001838236.1| DNA mismatch repair protein MutS [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167778662|gb|ABZ96960.1| DNA mismatch repair protein MutS [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 833 Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust. Identities = 308/888 (34%), Positives = 464/888 (52%), Gaps = 77/888 (8%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TP+MRQY+E+K ++PD +VF+RMGDFYE+F DDA +A++ L ITLTKR IPM Sbjct: 2 NTPVMRQYLEVKELHPDGIVFFRMGDFYEMFLDDAKIAAQILDITLTKRQNQ----IPMA 57 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G+P H YI +LI G ++ +CEQ + P + K + ++ R VVR++TPGT+ ED L Sbjct: 58 GIPYHATESYISRLISAGKKVVVCEQTK-PDDPKAK----IMSREVVRIITPGTVVEDNL 112 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTG---IFKISTSNHDRLISDIMRIDPREIIFSE 201 L +NYL + +T +A+ D+ST F S S +R++ I R P+E+I+++ Sbjct: 113 LGGYQNNYLSLYYKEKTSVYLAFADVSTSELVYFFFSESEKERILDTIKRFSPKEMIYTD 172 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 P + + I ++I Y + G + V A Sbjct: 173 D--------------------IPPLSKESKIILTQIPKEY-VPKKKGAGIDTVVHVLDAY 211 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 +Y + V K P R D L +D S+LE++ + +L ++ Sbjct: 212 LQYNY-RNQNFVFKS----PRRIDETEYLILDEQTVSHLELVEN-PNDKNHTLFGVLNRC 265 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +T G R +RI P D KI D I QN I++ L D+ R ++R Sbjct: 266 LTATGKRYLKQRILFPTRDENKIKDHWDKIEILTQNKKERLKIKESLGDLIDLERVITRF 325 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL----SS 437 ++G+ P+D GI + + L + L G KLP LE + ++ Sbjct: 326 RVGKALPRDFR----GIEKSLTAVTL-----MKAVLDGIGYDFSKLPNDLESLVLEFQNT 376 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + +LP F + FL+ G DE R++ K I L+ K +E+ +LKI++N Sbjct: 377 LFDGELPVFLGNSPFLKSGFHKEYDEAILAREKGKDWILELEEKEKKESGCSSLKIRYNK 436 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 LGYFIEV+ + A KD+ S F+ +QT+ RFT+ +L +LE I A I Sbjct: 437 ILGYFIEVSKAQA----KDVPS--HFLKKQTLVTGERFTSPKLEELERAILQADEIIERI 490 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + F+ L I E+ S +A +D ++L + +E + RP I N D Sbjct: 491 EKQFFDRLVATCISLYEAFLTLSNEVASLDYHLSLTEIKEEYQWIRPEIRNDGIIEYMDS 550 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE L + F+ N +L N K + + +LTGPNM GKSTF+RQ A+ I+ Sbjct: 551 RHPVVETFLP--IGERFVPNHLEL---NPKENA-IAVLTGPNMAGKSTFMRQIAINQILF 604 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 QMGSYVPA A + IVD++F+R+GS DNL G STF VEM ETA+ILNQ T S ++ DE Sbjct: 605 QMGSYVPAKKASLSIVDRIFTRIGSGDNLTKGESTFYVEMRETATILNQFTENSLILFDE 664 Query: 738 IGRGTATLDGLSIAWATIEYLHET-NRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 +GRGT+T DGLSIAWA +E+L + + + + ATH+HELT+L K F N L + + Sbjct: 665 VGRGTSTYDGLSIAWAILEFLSKNFPKPKTIFATHYHELTELEKGAGIF-NLYLDTFEKD 723 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL---- 852 I+FL KV G + S+GI V KLAG+P TV RA +IL E ++++++ Sbjct: 724 GEILFLKKVKRGKSKQSFGIYVAKLAGIPETVSERAKEILVGLES----KKREIKIKNEE 779 Query: 853 --YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + I KE N LS N++ +++I ++ +++ PL AL L +K Sbjct: 780 PSLFGNILEKEP-NGLSANEEKVIKRISQIDPNKIPPLEALSILDELK 826 >gi|195941992|ref|ZP_03087374.1| DNA mismatch repair protein [Borrelia burgdorferi 80a] gi|312149155|gb|ADQ29226.1| DNA mismatch repair protein MutS [Borrelia burgdorferi N40] Length = 862 Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust. Identities = 282/826 (34%), Positives = 460/826 (55%), Gaps = 51/826 (6%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K+ TPM+RQY++IK D+++F+R+G FYE+FFDDA+ S+ L +TLTKR +++P Sbjct: 3 KNVTPMIRQYLDIKKKYKDAVLFFRVGSFYEMFFDDAIEVSKLLNLTLTKR-----ENVP 57 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP HT+ YI+KLI ++AICEQ A + + R VV ++TPG + ++ Sbjct: 58 MCGVPYHTSKEYIRKLILFDKKVAICEQ------ASNSTSGGPLEREVVEVITPGVIIDE 111 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDIST---GIFKISTSNHDRLISDIMRIDPREIIF 199 L+ +NYL+A++ + ++ ++ID+ST GI ++L D+ + P+EII Sbjct: 112 DFLNDDINNYLVAISDYKDYYSFSYIDLSTSSLGIMFYENGFFEKLKRDLEKYSPKEIIV 171 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 SE + EY + P D I+ I +++NI + + G F + EK Sbjct: 172 SEN--FYYEYSEKLNLSRFLINRVPTWHLDKDIAIKTIKEHFNILGLSSLG-FDE-EKPY 227 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQ---STLFIDSAARSNLEILRTLSG-SREQSLL 315 + I + K + ++ DI S +F+D + NLE+++ + S + SL Sbjct: 228 YISIFLIINHIKNNLKNLLSNIDKIDINNDSSYMFLDDVTQVNLELVKNNNDFSSQYSLY 287 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 ++ T G RL E I +P+ + ++INTRLD + FF +N L +++ + D+ Sbjct: 288 SVLNDCKTAMGKRLLREFILNPILNISEINTRLDHVEFFCKNISLTVTLRETFINIWDIE 347 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEK--LKKLPQSLEK 433 R +SR+++ R KD I + + LF K++ E+ + ++ + Sbjct: 348 RIISRIQMKRYIKKDFLFIEKALSVFFTVKKLFDKHNFDYWNFDKFEEDSISRVYFLINS 407 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 +SS D+L ++ G D LD + L+ + + I +KI NLKI Sbjct: 408 AISSA-PDEL---------IKRGYDLKLDNLKDLKINANKYIDQYLESERLLSKINNLKI 457 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 + NN G F EVT S+ + + F+ Q +++ R+ T +LI LE I NA ++ Sbjct: 458 RKTNNRGLFFEVTKSNYA------QVPPHFMESQALNSSKRYKTEKLISLEVDINNAEDN 511 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + E E F+ +++ ++ ++ L S+ A ID+ + LAK+ Y RP++ + + Sbjct: 512 VVAFEQEIFDEIASNVVMHNKVLKKVSEFFAYIDLVVNFGYLAKKNEYKRPVLTSGKEIL 571 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLW-LLTGPNMGGKSTFLRQNAL 672 ++ RHP+VE +K +++ F N + N K + L+TGPNM GKST+LRQ AL Sbjct: 572 LEKSRHPVVEHYVK--NTEIFTENFVRI------NKEKYFCLITGPNMAGKSTYLRQVAL 623 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 I +MA +GS+VPAS A IGI DK+F R+G++DN+A G STF+VEM ETA+IL AT +S Sbjct: 624 ITLMAHIGSFVPASKALIGITDKIFCRIGASDNIAKGESTFLVEMNETANILRNATEKSL 683 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 +I+DE+GRGT+T DGL+IA++ IEY+ E + R L ATHFHEL+ ++ + F N ++++ Sbjct: 684 IIMDEVGRGTSTNDGLAIAYSIIEYILEYIKARSLFATHFHELSSINH--QAFINLSMKI 741 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKT 838 ++FL +V + +SYGI V ++AGLP VI RA IL++ Sbjct: 742 EKQGNDLVFLREVEEKPSLNSYGIYVARIAGLPLRVIDRANVILES 787 >gi|225871419|ref|YP_002747366.1| DNA mismatch repair protein MutS [Streptococcus equi subsp. equi 4047] gi|254766638|sp|C0MAS5|MUTS_STRE4 RecName: Full=DNA mismatch repair protein mutS gi|225700823|emb|CAW95529.1| DNA mismatch repair protein MutS [Streptococcus equi subsp. equi 4047] Length = 851 Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust. Identities = 280/884 (31%), Positives = 473/884 (53%), Gaps = 53/884 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKKDYPDAFLLFRMGDFYELFYEDAVKAAQILEIGLTSRNKNADNPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+ YI LI +GH++AI EQ+E P +A +V+R VV+++TPGT D Sbjct: 67 VPYHSVQQYIDVLIDLGHKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTAV-DSSR 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 + +N+L+AV + ++++D+STG F ++ + S+I + +E++ EL Sbjct: 121 PDSPNNFLVAVDFDGKAYGLSYMDVSTGEFFATDLADFASVKSEIQNLKAKEVLLG-FEL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S E L + L N+ ++ F ++ +S + D+ + VE +AA + Sbjct: 180 SEEEQAILVKQL-NLLLS----FEMTALEDSPLIDH----------QLTAVELSAAGKLL 224 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSIT 323 Y+ +TQ+ + DI+ L + A +S+L++L +G + SL +D + T Sbjct: 225 HYVHQTQLRELSHLQALVHYDIKDYLQMSYATKSSLDLLENARTGKKHGSLYWLLDETKT 284 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL I PL S I R + I F+ I + LK D+ R SR+ Sbjct: 285 AMGMRLLRAWIDRPLVTSEAILERQEIIQVFLNAFIERTDLSDSLKGVYDIERLSSRVSF 344 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 G+ PKD+ + + + + + L+ L V ++ LP+ LE + S + D Sbjct: 345 GKANPKDLLQLGHTL-AKVPYIKAILEAFNSPYLDKLVNQIDTLPE-LEHLIRSAIDPDA 402 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P +G +R G D LD R + + IA ++ K + + I NLKI +N GY+ Sbjct: 403 PATINEGNIIRTGFDERLDHYRKVMREGTGWIADIETKERQASGISNLKIDYNKKDGYYF 462 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 VT+S+ ++ D F + T+ N R+ T EL +E ++ A + +E + F Sbjct: 463 HVTNSNLGMVP------DHFFRKATLKNSERYGTAELAKIEGQMLEAREESSSLEYDIFM 516 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 + + + L ++ +A +D+ +LA++A++ +Y RP+ + + + +GRH +VE Sbjct: 517 RIRAQVETYIDRLQQLAKALATVDVLQSLAVVAEKNHYVRPLFNQESKIAIDNGRHAVVE 576 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 K L Q +I N + L+TGPNM GKST++RQ AL VIMAQ+GS+V Sbjct: 577 KVLGVQE---YIPNSISFGPQT-----SIQLITGPNMSGKSTYMRQLALTVIMAQIGSFV 628 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 A A + + D +F+R+G+AD+L SG+STFMVEM+E + +AT S ++ DE+GRGTA Sbjct: 629 AAESASLPLFDAIFTRIGAADDLISGQSTFMVEMMEANHAIKRATPHSLILFDELGRGTA 688 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DG+++A + IEY+H+ + + ATH+HELT+LS L + N + + + + FLH Sbjct: 689 TYDGMALAQSIIEYIHDRVGAKTMFATHYHELTELSTKLTKLVNVHVATLEKDGNVTFLH 748 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESK 863 K+ G AD SYGI V ++AGLP +++RA +L E ++ L E+ +E++ Sbjct: 749 KIAEGPADKSYGIHVARIAGLPEDLLARADTVLTKLEA--QSQARESVLSTTEV--RETQ 804 Query: 864 NNLSKNDKLF---------VEKIKCLNLDEMSPLTALKTLYAVK 898 ++ LF +++++ +++ ++P+ A+ LY +K Sbjct: 805 QLANQQLSLFTDDGSSSEIIKRLESVDVMNLTPIQAMTVLYELK 848 >gi|189910358|ref|YP_001961913.1| DNA mismatch repair protein MutS [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775034|gb|ABZ93335.1| DNA mismatch repair ATPase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 840 Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust. Identities = 308/888 (34%), Positives = 464/888 (52%), Gaps = 77/888 (8%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TP+MRQY+E+K ++PD +VF+RMGDFYE+F DDA +A++ L ITLTKR IPM Sbjct: 9 NTPVMRQYLEVKELHPDGIVFFRMGDFYEMFLDDAKIAAQILDITLTKRQNQ----IPMA 64 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G+P H YI +LI G ++ +CEQ + P + K + ++ R VVR++TPGT+ ED L Sbjct: 65 GIPYHATESYISRLISAGKKVVVCEQTK-PDDPKAK----IMSREVVRIITPGTVVEDNL 119 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTG---IFKISTSNHDRLISDIMRIDPREIIFSE 201 L +NYL + +T +A+ D+ST F S S +R++ I R P+E+I+++ Sbjct: 120 LGGYQNNYLSLYYKEKTSVYLAFADVSTSELVYFFFSESEKERILDTIKRFSPKEMIYTD 179 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 P + + I ++I Y + G + V A Sbjct: 180 D--------------------IPPLSKESKIILTQIPKEY-VPKKKGAGIDTVVHVLDAY 218 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 +Y + V K P R D L +D S+LE++ + +L ++ Sbjct: 219 LQYNY-RNQNFVFKS----PRRIDETEYLILDEQTVSHLELVEN-PNDKNHTLFGVLNRC 272 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +T G R +RI P D KI D I QN I++ L D+ R ++R Sbjct: 273 LTATGKRYLKQRILFPTRDENKIKDHWDKIEILTQNKKERLKIKESLGDLIDLERVITRF 332 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL----SS 437 ++G+ P+D GI + + L + L G KLP LE + ++ Sbjct: 333 RVGKALPRDFR----GIEKSLTAVTL-----MKAVLDGIGYDFSKLPNDLESLVLEFQNT 383 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + +LP F + FL+ G DE R++ K I L+ K +E+ +LKI++N Sbjct: 384 LFDGELPVFLGNSPFLKSGFHKEYDEAILAREKGKDWILELEEKEKKESGCSSLKIRYNK 443 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 LGYFIEV+ + A KD+ S F+ +QT+ RFT+ +L +LE I A I Sbjct: 444 ILGYFIEVSKAQA----KDVPS--HFLKKQTLVTGERFTSPKLEELERAILQADEIIERI 497 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + F+ L I E+ S +A +D ++L + +E + RP I N D Sbjct: 498 EKQFFDRLVATCISLYEAFLTLSNEVASLDYHLSLTEIKEEYQWIRPEIRNDGIIEYMDS 557 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE L + F+ N +L N K + + +LTGPNM GKSTF+RQ A+ I+ Sbjct: 558 RHPVVETFLP--IGERFVPNHLEL---NPKENA-IAVLTGPNMAGKSTFMRQIAINQILF 611 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 QMGSYVPA A + IVD++F+R+GS DNL G STF VEM ETA+ILNQ T S ++ DE Sbjct: 612 QMGSYVPAKKASLSIVDRIFTRIGSGDNLTKGESTFYVEMRETATILNQFTENSLILFDE 671 Query: 738 IGRGTATLDGLSIAWATIEYLHET-NRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 +GRGT+T DGLSIAWA +E+L + + + + ATH+HELT+L K F N L + + Sbjct: 672 VGRGTSTYDGLSIAWAILEFLSKNFPKPKTIFATHYHELTELEKGAGIF-NLYLDTFEKD 730 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL---- 852 I+FL KV G + S+GI V KLAG+P TV RA +IL E ++++++ Sbjct: 731 GEILFLKKVKRGKSKQSFGIYVAKLAGIPETVSERAKEILVGLES----KKREIKIKNEE 786 Query: 853 --YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + I KE N LS N++ +++I ++ +++ PL AL L +K Sbjct: 787 PSLFGNILEKEP-NGLSANEEKVIKRISQIDPNKIPPLEALSILDELK 833 >gi|45657640|ref|YP_001726.1| DNA mismatch repair protein MutS [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|48428290|sp|P61669|MUTS_LEPIC RecName: Full=DNA mismatch repair protein mutS gi|45600880|gb|AAS70363.1| DNA mismatch repair protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 848 Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust. Identities = 305/877 (34%), Positives = 474/877 (54%), Gaps = 67/877 (7%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM+Q++ IK PD+++F+RMGDFYE+F +DA +AS L I LTKR +PMC Sbjct: 21 NTPMMKQFLAIKKDFPDTILFFRMGDFYEMFLEDAKIASSILDIALTKRQNA----VPMC 76 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G+P H+ ++YI +L+ G +IAICEQ P EA G+K L+ R+VVR++TPGT+ E+ L Sbjct: 77 GIPYHSKDNYISRLLNAGKKIAICEQ-SKPEEA---GSK-LMTRDVVRIITPGTVIEENL 131 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTG-IF--KISTSNHDRLISDIMRIDPREIIFSE 201 LS +NYL + ++ A D STG +F +S + +RLI+++ + P EI + Sbjct: 132 LSGFQNNYLAVLHLKKSLIYFAIADFSTGEVFYSSVSVTGLERLIAELEKFKPSEICVPK 191 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 E H ++ L E N + ++ +++I + D+F S+ Sbjct: 192 SE--HTFFQEL-EYFKNR---------EFTVLKNQI----ETSEKDSFQVLSKYLN---- 231 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 YI++T NK + P+ L +D NLE++ + +L ++ Sbjct: 232 ---EYIRETYRDNKLVLREPKILSSGKFLEMDRETIRNLELVEN-EKEKNNTLYSIFNFC 287 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G RL +RI P D + +R + + ++ ++ P LK D+ R L+R Sbjct: 288 NTAKGKRLLKQRILFPECDPVVLYSRWEKQDILLKT--VLAPYITALKDFGDLERILTRF 345 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 + P+D + + I SGI + K P +E+LKK+ +++ L D Sbjct: 346 RGNHAYPRDFRSLLNSISSGIKLKEELEKVSYP--FLIPIEELKKISDFIQERLHP--GD 401 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 DLP +G FL+ G LD+ R + K I L+ K + T + LKI++N +GY Sbjct: 402 DLPVILGNGIFLKKGFSQKLDQAREAGVKGKDWILDLETKEKKRTGLNTLKIRYNKIVGY 461 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 FIE++ + A KD ++ +QT+ RFT +L ++E I A IE Sbjct: 462 FIEISRAQAEQAPKD------YLKKQTLVGSERFTMPKLEEIERTILEADEIIQEIERTE 515 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 F + +++ S SL + S+ I +D I+L + + RP + + + D RHP+ Sbjct: 516 FNRMVEEVLKFSSSLLSFSEEIGDLDFQISLLTAKDKFGWIRPKLSEDRSLDLNDSRHPV 575 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE TL + FI N L D + +LTGPNM GKSTF+RQ AL I+ Q+G+ Sbjct: 576 VEATL--PPGQEFIPNSVYL----DTQDKAIAVLTGPNMAGKSTFMRQIALNQILFQIGA 629 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA A + IVDKLF+R+G+ DNL +G STF VEM ETA+ILN T S ++ DE+GRG Sbjct: 630 FVPAKSAKLPIVDKLFTRIGAGDNLTAGESTFFVEMKETANILNHYTEDSLILFDEVGRG 689 Query: 742 TATLDGLSIAWATIEYLHETN-RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 T+T DG+SIAW+ +EYL + R + + ATH+HELT+LS+ L N L+ + + ++ Sbjct: 690 TSTYDGMSIAWSILEYLSSLSVRPKTIFATHYHELTELSR-LGGIFNLYLETLEKEDRVL 748 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY--YPEIQ 858 FL KV G A S+GI V K+AG+P ++ RA ++L E +K++++ P + Sbjct: 749 FLRKVKVGKAKKSFGIYVAKIAGVPEPIVKRAAELLTDLE----SKKKEIKIQEAQPTLF 804 Query: 859 TK-ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 T+ E+KN S+ + E I L L+EM+P+ ALKTL Sbjct: 805 TEPETKNFNSQTE----ESILKLKLEEMTPIEALKTL 837 >gi|221217578|ref|ZP_03589047.1| DNA mismatch repair protein MutS [Borrelia burgdorferi 72a] gi|225550275|ref|ZP_03771234.1| DNA mismatch repair protein MutS [Borrelia burgdorferi 118a] gi|221192524|gb|EEE18742.1| DNA mismatch repair protein MutS [Borrelia burgdorferi 72a] gi|225369143|gb|EEG98597.1| DNA mismatch repair protein MutS [Borrelia burgdorferi 118a] Length = 862 Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust. Identities = 282/826 (34%), Positives = 460/826 (55%), Gaps = 51/826 (6%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K+ TPM+RQY++IK D+++F+R+G FYE+FFDDA+ S+ L +TLTKR +++P Sbjct: 3 KNVTPMIRQYLDIKKKYKDAVLFFRVGSFYEMFFDDAIEVSKLLNLTLTKR-----ENVP 57 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP HT+ YI+KLI ++AICEQ A + + R VV ++TPG + ++ Sbjct: 58 MCGVPYHTSKEYIRKLILFDKKVAICEQ------ASNSTSGGPLEREVVEVITPGVIIDE 111 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDIST---GIFKISTSNHDRLISDIMRIDPREIIF 199 L+ +NYL+A++ + ++ ++ID+ST GI ++L D+ + P+EII Sbjct: 112 DFLNDDINNYLVAISDYKDYYSFSYIDLSTSSLGIMFYENGFFEKLKRDLEKYSPKEIIV 171 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 SE + EY + P D I+ I +++NI + + G F + EK Sbjct: 172 SEN--FYYEYSEKLNLSRFLINRVPTWHLDKDIAIKTIKEHFNILGLSSLG-FDE-EKPY 227 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQ---STLFIDSAARSNLEILRTLSG-SREQSLL 315 + I + K + ++ DI S +F+D + NLE+++ + S + SL Sbjct: 228 YISIFLIINHIKNNLKNLLSNIDKIDINNDSSYMFLDDVTQVNLELVKNNNDFSSQYSLY 287 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 ++ T G RL E I +P+ + ++INTRLD + FF +N L +++ + D+ Sbjct: 288 SVLNDCKTAMGKRLLREFILNPILNISEINTRLDHVEFFCKNISLTVTLRETFINIWDIE 347 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEK--LKKLPQSLEK 433 R +SR+++ R KD I + + LF K++ E+ + K+ + Sbjct: 348 RIISRIQMKRYIKKDFLFIEKALSVFFTVKKLFDKHNFDYWNFDKFEEDSISKVYFLINS 407 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 +SS D+L ++ G D LD + L+ + + I +KI NLKI Sbjct: 408 AISSA-PDEL---------IKRGYDLKLDNLKDLKINANKYIDQYLESERLLSKINNLKI 457 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 + NN G F EVT S+ + + F+ Q +++ R+ T +LI LE I NA ++ Sbjct: 458 RKTNNRGLFFEVTKSNYA------QVPPHFMESQALNSSKRYKTEKLISLEVDINNAEDN 511 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + E E F+ +++ ++ ++ L ++ A ID+ + LAK+ Y RP++ + + Sbjct: 512 VVAFEQEIFDEIASNVVMHNKVLKKVAEFFAYIDLVVNFGYLAKKNEYKRPVLTSGKEIL 571 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLW-LLTGPNMGGKSTFLRQNAL 672 ++ RHP+VE+ K +++ F N + N K + L+TGPNM GKST+LRQ AL Sbjct: 572 LEKSRHPVVERYTK--NTEIFTENFVRI------NKEKYFCLITGPNMAGKSTYLRQVAL 623 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 I +MA +GS+VPAS A IGI DK+F R+G++DN+A G STF+VEM ETA+IL AT +S Sbjct: 624 ITLMAHIGSFVPASKALIGITDKIFCRIGASDNIAKGESTFLVEMNETANILRNATEKSL 683 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 +I+DE+GRGT+T DGL+IA++ IEY+ E + R L ATHFHEL+ ++ + F N ++++ Sbjct: 684 IIMDEVGRGTSTNDGLAIAYSIIEYILEYIKARSLFATHFHELSSINH--QAFINLSMKI 741 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKT 838 ++FL +V + +SYGI V ++AGLP VI RA IL++ Sbjct: 742 EKQGNDLVFLREVEEKPSLNSYGIYVARIAGLPLRVIDRANVILES 787 >gi|24214846|ref|NP_712327.1| DNA mismatch repair protein MutS [Leptospira interrogans serovar Lai str. 56601] gi|44888218|sp|Q8F496|MUTS_LEPIN RecName: Full=DNA mismatch repair protein mutS gi|24195861|gb|AAN49345.1| DNA mismatch repair protein mutS [Leptospira interrogans serovar Lai str. 56601] Length = 848 Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust. Identities = 305/877 (34%), Positives = 474/877 (54%), Gaps = 67/877 (7%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 +TPMM+Q++ IK PD+++F+RMGDFYE+F +DA +AS L I LTKR +PMC Sbjct: 21 NTPMMKQFLAIKKDFPDTILFFRMGDFYEMFLEDAKIASSILDIALTKRQNA----VPMC 76 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G+P H+ ++YI +L+ G +IAICEQ P EA G+K L+ R+VVR++TPGT+ E+ L Sbjct: 77 GIPYHSKDNYISRLLNAGKKIAICEQ-SKPEEA---GSK-LMTRDVVRIITPGTVIEENL 131 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTG-IF--KISTSNHDRLISDIMRIDPREIIFSE 201 LS +NYL + ++ A D STG +F +S + +RLI+++ + P EI + Sbjct: 132 LSGFQNNYLAVLHLKKSLIYFAIADFSTGEVFYSSVSVTGLERLIAELEKFKPSEICVPK 191 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 E H ++ L E N + ++ +++I + D+F S+ Sbjct: 192 SE--HTFFQEL-EYFKNR---------EFTVLKNQI----ETSEKDSFQVLSKYLN---- 231 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 YI++T NK + P+ L +D NLE++ + +L ++ Sbjct: 232 ---EYIRETYRDNKLVLREPKILSSGKFLEMDRETIRNLELVEN-EKEKNNTLYSIFNFC 287 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G RL +RI P D + +R + + ++ ++ P LK D+ R L+R Sbjct: 288 NTAKGKRLLKQRILFPECDPVVLYSRWEKQDILLKT--VLAPYITALKDFGDLERILTRF 345 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 + P+D + + I SGI + K P +E+LKK+ +++ L D Sbjct: 346 RGNHAYPRDFRSLLNSISSGIKLKEELEKVSYP--FLIPIEELKKISDFIQERLHP--GD 401 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 DLP +G FL+ G LD+ R + K I L+ K + T + LKI++N +GY Sbjct: 402 DLPVILGNGIFLKKGFSQKLDQAREAGVKGKDWILDLETKEKKRTGLNTLKIRYNKIVGY 461 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 FIE++ + A KD ++ +QT+ RFT +L ++E I A IE Sbjct: 462 FIEISRAQAEQAPKD------YLKKQTLVGSERFTMPKLEEIERTILEADEIIQEIERTE 515 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 F + +++ S SL + S+ I +D I+L + + RP + + + D RHP+ Sbjct: 516 FNRMVEEVLKFSSSLLSFSEEIGDLDFQISLLTAKDKFGWIRPKLSEDRSLDLSDSRHPV 575 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE TL + FI N L D + +LTGPNM GKSTF+RQ AL I+ Q+G+ Sbjct: 576 VEATL--PPGQEFIPNSVYL----DTQDKAIAVLTGPNMAGKSTFMRQIALNQILFQIGA 629 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA A + IVDKLF+R+G+ DNL +G STF VEM ETA+ILN T S ++ DE+GRG Sbjct: 630 FVPAKSAKLPIVDKLFTRIGAGDNLTAGESTFFVEMKETANILNHYTEDSLILFDEVGRG 689 Query: 742 TATLDGLSIAWATIEYLHETN-RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 T+T DG+SIAW+ +EYL + R + + ATH+HELT+LS+ L N L+ + + ++ Sbjct: 690 TSTYDGMSIAWSILEYLSSLSVRPKTIFATHYHELTELSR-LGGIFNLYLETLEKEDRVL 748 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY--YPEIQ 858 FL KV G A S+GI V K+AG+P ++ RA ++L E +K++++ P + Sbjct: 749 FLRKVKVGKAKKSFGIYVAKIAGVPEPIVKRAAELLTDLE----SKKKEIKIQEAQPTLF 804 Query: 859 TK-ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 T+ E+KN S+ + E I L L+EM+P+ ALKTL Sbjct: 805 TEPETKNFNSQTE----ESILKLKLEEMTPIEALKTL 837 >gi|326693690|ref|ZP_08230695.1| DNA mismatch repair protein MutS [Leuconostoc argentinum KCTC 3773] Length = 864 Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust. Identities = 286/830 (34%), Positives = 445/830 (53%), Gaps = 43/830 (5%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 + TPMM QY EIK+ PD+ VFYR+GDFYELF +DA+ ++ L +TLT R K+ +PM Sbjct: 5 ADTPMMVQYHEIKAQYPDAFVFYRLGDFYELFEEDAIQGAKLLELTLTARNKNSENPVPM 64 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G+P H A +YI L+ GH++AI EQ+E AK +V+R+VV+L+TPGT Sbjct: 65 AGIPHHAAQNYIDILVDQGHKVAIVEQMEDAAAAK-----GMVKRDVVQLITPGTKLSGG 119 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMR-IDPREIIFSEK 202 S +NYL AV WA+A+ID+STG K +TS + D +R ++ +E++ + Sbjct: 120 AGSDKQNNYLAAVLPDGQAWAMAYIDLSTGELKATTSQQFNDVVDELRSLEVKEVVLRQN 179 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVD--TFGSFSQVEKTAA 260 + + + + LG +H + S A+ T+ T +E Sbjct: 180 DPETIK-QQMATKLG-----------EHGLVISTQAEVAPSATISFLTQNLTHPLEVAVT 227 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILR-TLSGSREQSLLKTID 319 + YI TQ N I E + + L + R NL+++ T + R SLL ID Sbjct: 228 TMLLGYIFDTQRRNLEHIVPAESYERLAYLKFNQDTRINLDLVENTRTKKRAGSLLGLID 287 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T GGRL + + PL I RLD + F + +Q LKS D+ R + Sbjct: 288 ETHTAMGGRLLKQWVLKPLRVQADIEARLDLVQAFQADFFSRGTLQDHLKSVYDLERLAA 347 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R +G +++ ++ +R+ I ++D L+ ++L + L + + Sbjct: 348 RAAMGTMNARELVQLKRSLRAIPAIKATLAESD--SLLQAVGQQLDDMG-DLATMIDDAI 404 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 D+ P R+G +++G DA + E R + +++ +A L+ T I +LK+ +N NL Sbjct: 405 MDEPPISVREGNIIKNGFDAKIAEYRQVLTDNQQWLAQLEADERAATGIGSLKVGYNKNL 464 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GYFIEVT ++ L +++R+ QT++N RF T EL E I A E Sbjct: 465 GYFIEVTKANIGKL-----AENRYERLQTLTNAERFVTPELKAHERLIIEAQAKQTEREY 519 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 + F + + + + L +Q +A +D+ ALA +A + + RP+ + + ++ GRH Sbjct: 520 DLFVTVRDHVKAEIGRLQTLAQQVARLDVLAALADVADNRRFVRPVFTSGNHIAIEQGRH 579 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE L + F+AND + + + L+TGPNM GKST++R+ ALIVI+AQM Sbjct: 580 PVVESLL---PAGEFVANDVMMD-----DQTNMQLITGPNMAGKSTYMRELALIVILAQM 631 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPAS A + I D++F+R+G+ D++A G+STFMVEM E L +AT S ++ DE+G Sbjct: 632 GSFVPASAADLPIFDQIFTRIGANDDMAMGQSTFMVEMAEANHALQEATAHSLILFDELG 691 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL-QVSDSNEG 798 RGTAT DG+++A A IE+L+ + L +TH+HELT L+ N + V D++ Sbjct: 692 RGTATYDGMALAQAIIEFLNTHVHAKTLFSTHYHELTVLADQHAGIANVHVGAVEDADGQ 751 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 + FLH++ G AD SYGI V LAGLP+ +I+ A IL E NQK Sbjct: 752 LHFLHQIQTGPADKSYGIHVAALAGLPDELIANATHILSQLE-----NQK 796 >gi|313890364|ref|ZP_07823995.1| DNA mismatch repair protein MutS [Streptococcus pseudoporcinus SPIN 20026] gi|313121207|gb|EFR44315.1| DNA mismatch repair protein MutS [Streptococcus pseudoporcinus SPIN 20026] Length = 849 Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust. Identities = 284/882 (32%), Positives = 479/882 (54%), Gaps = 51/882 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK+ PD+ + +RMGDFYELF++DA+ A++ L I LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKANYPDAFLLFRMGDFYELFYEDAVKAAQLLEIGLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI++G+++AI EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPHHSAQQYIDVLIEMGYKVAIAEQMEDPKKAV-----GVVKREVVQVITPGTVV-DSAK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 T +N+L+A+ + ++++D++TG F S ++ L S+I+ + +E+I EL Sbjct: 121 PSTANNFLVAIDHDGQGYGLSYMDLATGEFFVTSLTDFTNLSSEILNLKAKEVILG-FEL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 + + K L + N+ +S S +D + + +E A + Sbjct: 180 NEDQEKQLKQ--------DSNLLLSYSDSCCENSDLLS-------PQLAPIELRVAGKLL 224 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSIT 323 +Y+ +TQM + +I+ L + + +++L++L +G + SL +D + T Sbjct: 225 AYVHQTQMRELSHLQKVSHYEIKDYLQMTYSTKASLDLLENARTGKKHGSLYWLLDETKT 284 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL I PL I R I F+ N I + LK D+ R SR+ Sbjct: 285 AMGMRLLRTWIDRPLIHQAAIEKRQRIIQTFLDNFIERADLSDSLKGVYDIERLSSRVSF 344 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 G+ PKD+ + + + + + L++ +L V+++ +P+ LE + S + + Sbjct: 345 GKVNPKDLLQLGQTL-ARVPYIKAVLESMTSTDLGELVDQIDTIPE-LENLIRSAIDPEA 402 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 +G +R G D LD R + + IA ++ K + + I NLKI +N GY+ Sbjct: 403 QATISEGNIIRTGFDERLDHYRKVMKEGTGWIADIEGKERQASGINNLKIDYNKKDGYYF 462 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 VT+S+ S++ D F + T+ N R+ T EL +E ++ A + +E + F Sbjct: 463 HVTNSNLSLVP------DHFFRKATLKNSERYGTAELAKIEGQMLEAREESAQLEYDIFM 516 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 + + L + ++ IA +D+ +LA +A++ +Y P + + DGRH +VE Sbjct: 517 RVRAQVETYIARLQSLAKAIATVDVLQSLAHVAEQNHYVCPQFNQDKEVRIVDGRHAVVE 576 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 K + + +I N L+ D+ S + L+TGPNM GKST++RQ AL VIMAQMGSYV Sbjct: 577 KVM---GVREYIPNSIHLT---DQVS--IQLITGPNMSGKSTYMRQLALTVIMAQMGSYV 628 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 A A++ + D +F+R+G+AD+L SG+STFMVEM+E + +A+ S ++ DE+GRGTA Sbjct: 629 SADQANLPLFDAIFTRIGAADDLISGQSTFMVEMMEANQAIQRASQNSLILFDELGRGTA 688 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DG+++A + IEY+H+ + L ATH+HELT LS L+ N + + + FLH Sbjct: 689 TYDGMALAQSIIEYIHDRVGAKTLFATHYHELTALSSQLEGLQNVHVATLERGGEVTFLH 748 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY-YPEIQTKES 862 K+ G AD SYGI V K+AGLP ++SRA IL+ E + K + L + ++E+ Sbjct: 749 KISEGPADKSYGIHVAKIAGLPEGLLSRAGHILEELEG----DSKRVTLANTSAVVSQET 804 Query: 863 KNN------LSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 N S+ +++ V+K+K +++ ++P+ A+ LY +K Sbjct: 805 SGNQQLALLTSEANEVIVDKLKAIDIMNLTPMEAMTILYDLK 846 >gi|216264547|ref|ZP_03436539.1| DNA mismatch repair protein MutS [Borrelia burgdorferi 156a] gi|215981020|gb|EEC21827.1| DNA mismatch repair protein MutS [Borrelia burgdorferi 156a] Length = 862 Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust. Identities = 282/826 (34%), Positives = 459/826 (55%), Gaps = 51/826 (6%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K+ TPM+RQY++IK D+++F+R+G FYE+FFDDA+ S+ L +TLTKR +++P Sbjct: 3 KNVTPMIRQYLDIKKKYKDAVLFFRVGSFYEMFFDDAIEVSKLLNLTLTKR-----ENVP 57 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP HT+ YI+KLI ++AICEQ A + + R VV ++TPG + ++ Sbjct: 58 MCGVPYHTSKEYIRKLILFDKKVAICEQ------ASNSTSGGPLEREVVEVITPGVIIDE 111 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDIST---GIFKISTSNHDRLISDIMRIDPREIIF 199 L+ +NYL+A++ + ++ ++ID+ST GI ++L D+ + P+EII Sbjct: 112 DFLNDDINNYLVAISDYKDYYSFSYIDLSTSSLGIMFYENGFFEKLKRDLEKYSPKEIIV 171 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 SE + EY + P D I+ I +++NI + + G F + EK Sbjct: 172 SEN--FYYEYSEKLNLSRFLINRVPTWHLDKDIAIKTIKEHFNILGLSSLG-FDE-EKPY 227 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQ---STLFIDSAARSNLEILRTLSG-SREQSLL 315 + I + K + ++ DI S +F+D + NLE+++ + S + SL Sbjct: 228 YISIFLIINHIKNNLKNLLSNIDKIDINNDSSYMFLDDVTQVNLELVKNNNDFSSQYSLY 287 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 ++ T G RL E I +P+ + ++INTRLD + FF +N L +++ + D+ Sbjct: 288 SVLNDCKTAMGKRLLREFILNPILNISEINTRLDHVEFFCKNISLTVTLRETFINIWDIE 347 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEK--LKKLPQSLEK 433 R +SR+++ R KD I + + LF K++ E+ + ++ + Sbjct: 348 RIISRIQMKRYIKKDFLFIEKALSVFFTVKKLFDKHNFDYWNFDKFEEDSISRVYFLINS 407 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 +SS D+L ++ G D LD + L+ + + I +KI NLKI Sbjct: 408 AISSA-PDEL---------IKRGYDLKLDSLKDLKINANKYIDQYLESERLLSKINNLKI 457 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 + NN G F EVT S+ + + F+ Q +++ R+ T +LI LE I NA ++ Sbjct: 458 RKTNNRGLFFEVTKSNYA------QVPPHFMESQALNSSKRYKTEKLISLEVDINNAEDN 511 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + E E F+ +++ ++ ++ L S+ A ID+ + LAK+ Y RP++ + + Sbjct: 512 VVAFEQEIFDEIASNVVMHNKVLKKVSEFFAYIDLVVNFGYLAKKNEYKRPVLTSGKEIL 571 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLW-LLTGPNMGGKSTFLRQNAL 672 ++ RHP+VE K +++ F N + N K + L+TGPNM GKST+LRQ AL Sbjct: 572 LEKSRHPVVEHYTK--NTEIFTENFVRI------NKEKYFCLITGPNMAGKSTYLRQVAL 623 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 I +MA +GS+VPAS A IGI DK+F R+G++DN+A G STF+VEM ETA+IL AT +S Sbjct: 624 ITLMAHIGSFVPASKALIGITDKIFCRIGASDNIAKGESTFLVEMNETANILRNATEKSL 683 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 +I+DE+GRGT+T DGL+IA++ IEY+ E + R L ATHFHEL+ ++ + F N ++++ Sbjct: 684 IIMDEVGRGTSTNDGLAIAYSIIEYILEYIKARSLFATHFHELSSINH--QAFINLSMKI 741 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKT 838 ++FL +V + +SYGI V ++AGLP VI RA IL++ Sbjct: 742 EKQGNDLVFLREVEEKPSLNSYGIYVARIAGLPLRVIDRANVILES 787 >gi|226320842|ref|ZP_03796394.1| DNA mismatch repair protein MutS [Borrelia burgdorferi 29805] gi|226233708|gb|EEH32437.1| DNA mismatch repair protein MutS [Borrelia burgdorferi 29805] Length = 849 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 282/826 (34%), Positives = 459/826 (55%), Gaps = 51/826 (6%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K+ TPM+RQY++IK D+++F+R+G FYE+FFDDA+ S+ L +TLTKR +++P Sbjct: 3 KNVTPMIRQYLDIKKKYKDAVLFFRVGSFYEMFFDDAIEVSKLLNLTLTKR-----ENVP 57 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP HT+ YI+KLI ++AICEQ A + + R VV ++TPG + ++ Sbjct: 58 MCGVPYHTSKEYIRKLILFDKKVAICEQ------ASNSTSGGPLEREVVEVITPGVIIDE 111 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDIST---GIFKISTSNHDRLISDIMRIDPREIIF 199 L+ +NYL+A++ + ++ ++ID+ST GI ++L D+ + P+EII Sbjct: 112 DFLNDDINNYLVAISDYKDYYSFSYIDLSTSSLGIMFYENGFFEKLKRDLEKYSPKEIIV 171 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 SE + EY + P D I+ I +++NI + + G F + EK Sbjct: 172 SEN--FYYEYSEKLNLSRFLINRVPTWHLDKDIAIKTIKEHFNILGLSSLG-FDE-EKPY 227 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQ---STLFIDSAARSNLEILRTLSG-SREQSLL 315 + I + K + ++ DI S +FID + NLE+++ + S + SL Sbjct: 228 YISIFLIINHIKNNLKNLLSNIDKIDINNDSSYMFIDDVTQVNLELVKNNNDFSSQYSLY 287 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 ++ T G RL E I +P+ + ++INTRLD + FF +N L +++ + D+ Sbjct: 288 SVLNDCKTAMGKRLLREFILNPILNISEINTRLDHVEFFCKNISLTVTLRETFINIWDIE 347 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEK--LKKLPQSLEK 433 R +SR+++ R KD I + + LF K++ E+ + ++ + Sbjct: 348 RIISRIQMKRYIKKDFLFIEKALSVFFTVKKLFDKHNFDYWNFDKFEEDSISRVYFLINS 407 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 +SS D+L ++ G D LD + L+ + + I +KI NLKI Sbjct: 408 AISSA-PDEL---------IKRGYDLKLDNLKDLKINANKYIDQYLESERLLSKINNLKI 457 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 + NN G F EVT S+ + + F+ Q +++ R+ T +LI LE I NA ++ Sbjct: 458 RKTNNRGLFFEVTKSNYA------QVPPHFMESQALNSSKRYKTEKLISLEVDINNAEDN 511 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + E E F+ +++ ++ ++ L ++ A ID+ + LAK+ Y RP++ + + Sbjct: 512 VVAFEQEIFDEIASNVVMHNKVLKKVAEFFAYIDLVVNFGYLAKKNEYKRPVLTSGKEIL 571 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLW-LLTGPNMGGKSTFLRQNAL 672 ++ RHP+VE K +++ F N + N K + L+TGPNM GKST+LRQ AL Sbjct: 572 LEKSRHPVVEHYTK--NTEIFTENFVRI------NKEKYFCLITGPNMAGKSTYLRQVAL 623 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 I +MA +GS+VPAS A IGI DK+F R+G++DN+A G STF+VEM ETA+IL AT +S Sbjct: 624 ITLMAHIGSFVPASKALIGITDKIFCRIGASDNIAKGESTFLVEMNETANILRNATEKSL 683 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 +I+DE+GRGT+T DGL+IA++ IEY+ E + R L ATHFHEL+ ++ + F N ++++ Sbjct: 684 IIMDEVGRGTSTNDGLAIAYSIIEYILEYIKARSLFATHFHELSSINH--QAFINLSMKI 741 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKT 838 ++FL +V + +SYGI V ++AGLP VI RA IL++ Sbjct: 742 EKQGNDLVFLREVEEKPSLNSYGIYVARIAGLPLRVIDRANVILES 787 >gi|15595142|ref|NP_212931.1| DNA mismatch repair protein MutS [Borrelia burgdorferi B31] gi|218249851|ref|YP_002375296.1| DNA mismatch repair protein MutS [Borrelia burgdorferi ZS7] gi|223889321|ref|ZP_03623908.1| DNA mismatch repair protein MutS [Borrelia burgdorferi 64b] gi|225549370|ref|ZP_03770342.1| DNA mismatch repair protein MutS [Borrelia burgdorferi 94a] gi|226321262|ref|ZP_03796790.1| DNA mismatch repair protein MutS [Borrelia burgdorferi Bol26] gi|3914075|sp|O51737|MUTS_BORBU RecName: Full=DNA mismatch repair protein mutS gi|226723054|sp|B7J0P3|MUTS_BORBZ RecName: Full=DNA mismatch repair protein mutS gi|2688751|gb|AAC67157.1| DNA mismatch repair protein (mutS) [Borrelia burgdorferi B31] gi|218165039|gb|ACK75100.1| DNA mismatch repair protein MutS [Borrelia burgdorferi ZS7] gi|223885242|gb|EEF56345.1| DNA mismatch repair protein MutS [Borrelia burgdorferi 64b] gi|225369998|gb|EEG99439.1| DNA mismatch repair protein MutS [Borrelia burgdorferi 94a] gi|226233294|gb|EEH32045.1| DNA mismatch repair protein MutS [Borrelia burgdorferi Bol26] Length = 862 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 282/826 (34%), Positives = 459/826 (55%), Gaps = 51/826 (6%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K+ TPM+RQY++IK D+++F+R+G FYE+FFDDA+ S+ L +TLTKR +++P Sbjct: 3 KNVTPMIRQYLDIKKKYKDAVLFFRVGSFYEMFFDDAIEVSKLLNLTLTKR-----ENVP 57 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP HT+ YI+KLI ++AICEQ A + + R VV ++TPG + ++ Sbjct: 58 MCGVPYHTSKEYIRKLILFDKKVAICEQ------ASNSTSGGPLEREVVEVITPGVIIDE 111 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDIST---GIFKISTSNHDRLISDIMRIDPREIIF 199 L+ +NYL+A++ + ++ ++ID+ST GI ++L D+ + P+EII Sbjct: 112 DFLNDDINNYLVAISDYKDYYSFSYIDLSTSSLGIMFYENGFFEKLKRDLEKYSPKEIIV 171 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 SE + EY + P D I+ I +++NI + + G F + EK Sbjct: 172 SEN--FYYEYSEKLNLSRFLINRVPTWHLDKDIAIKTIKEHFNILGLSSLG-FDE-EKPY 227 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQ---STLFIDSAARSNLEILRTLSG-SREQSLL 315 + I + K + ++ DI S +F+D + NLE+++ + S + SL Sbjct: 228 YISIFLIINHIKNNLKNLLSNIDKIDINNDSSYMFLDDVTQVNLELVKNNNDFSSQYSLY 287 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 ++ T G RL E I +P+ + ++INTRLD + FF +N L +++ + D+ Sbjct: 288 SVLNDCKTAMGKRLLREFILNPILNISEINTRLDHVEFFCKNISLTVTLRETFINIWDIE 347 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEK--LKKLPQSLEK 433 R +SR+++ R KD I + + LF K++ E+ + K+ + Sbjct: 348 RIISRIQMKRYIKKDFLFIEKALSVFFTVKKLFDKHNFDYWNFDKFEEDSISKVYFLINS 407 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 +SS D+L ++ G D LD + L+ + + I +KI NLKI Sbjct: 408 AISSA-PDEL---------IKRGYDLKLDNLKDLKINANKYIDQYLESERLLSKINNLKI 457 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 + NN G F EVT S+ + + F+ Q +++ R+ T +LI LE I NA ++ Sbjct: 458 RKTNNRGLFFEVTKSNYA------QVPPHFMESQALNSSKRYKTEKLISLEVDINNAEDN 511 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + E E F+ +++ ++ ++ L ++ A ID+ + LAK+ Y RP++ + + Sbjct: 512 VVAFEQEIFDEIASNVVMHNKVLKKVAEFFAYIDLVVNFGYLAKKNEYKRPVLTSGKEIL 571 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLW-LLTGPNMGGKSTFLRQNAL 672 ++ RHP+VE K +++ F N + N K + L+TGPNM GKST+LRQ AL Sbjct: 572 LEKSRHPVVEHYTK--NTEIFTENFVRI------NKEKYFCLITGPNMAGKSTYLRQVAL 623 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 I +MA +GS+VPAS A IGI DK+F R+G++DN+A G STF+VEM ETA+IL AT +S Sbjct: 624 ITLMAHIGSFVPASKALIGITDKIFCRIGASDNIAKGESTFLVEMNETANILRNATEKSL 683 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 +I+DE+GRGT+T DGL+IA++ IEY+ E + R L ATHFHEL+ ++ + F N ++++ Sbjct: 684 IIMDEVGRGTSTNDGLAIAYSIIEYILEYIKARSLFATHFHELSSINH--QAFINLSMKI 741 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKT 838 ++FL +V + +SYGI V ++AGLP VI RA IL++ Sbjct: 742 EKQGNDLVFLREVEEKPSLNSYGIYVARIAGLPLRVIDRANVILES 787 >gi|118498078|ref|YP_899128.1| DNA mismatch repair protein [Francisella tularensis subsp. novicida U112] gi|208779512|ref|ZP_03246857.1| DNA mismatch repair protein MutS [Francisella novicida FTG] gi|189030726|sp|A0Q809|MUTS_FRATN RecName: Full=DNA mismatch repair protein mutS gi|118423984|gb|ABK90374.1| MutS, subunit of MutHLS complex, methyl-directed mismatch repair protein [Francisella novicida U112] gi|208744473|gb|EDZ90772.1| DNA mismatch repair protein MutS [Francisella novicida FTG] Length = 844 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 303/897 (33%), Positives = 480/897 (53%), Gaps = 74/897 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +++ + TPM++QY++IKS D L+FYRMGDFYELFFDDA A+ L ITLT RGK G+ Sbjct: 2 QDISNHTPMIQQYLKIKSQYQDILLFYRMGDFYELFFDDAKKAAELLDITLTARGKSNGE 61 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H A YI K++K G IAICEQ P +K V R V R++TP T+ Sbjct: 62 SIPMAGVPYHAAEAYIAKIVKKGLSIAICEQTGDP-----NTSKGPVERQVTRIITPATV 116 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKIST-SNHDRLISDIMRIDPREI 197 +E+ L + L+++ ++ +A+ + G I+ + T ++ + L + ++++ P+EI Sbjct: 117 SEEAFLDSNQDSILVSIFEKNNKYYLAYTSYTQGKIYLVKTLTSLNELKNTVLKLSPQEI 176 Query: 198 IFSEKELSHAE------------YKSLFETLGNVAVAQPNVFFDHSISESRIADYYN--I 243 I + +EL+ Y S FE A N D +I+ + + Y N + Sbjct: 177 ITNSRELAQQNPFKKPIKALEEWYYSNFE-----AKKYINDSLDTNIANNILNLYKNDQL 231 Query: 244 TTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEIL 303 TT+ + S+ ++ I K + I Y + +D TL ID +R NLE Sbjct: 232 TTIGSILSY-----------LTNILKDTPRHITDISYEQEQD---TLNIDINSRINLE-- 275 Query: 304 RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINP 363 L S + SLL I T G RL ++P + + TR + IN ++N + Sbjct: 276 --LDNSSKSSLLSIIGKCKTSLGSRLLKRYFSNPTRNLNILATRHNIINSLVENQHFLK- 332 Query: 364 IQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAV 421 IQ +L D+ R +SR+ +G +PKD+ +RD + + L + + PE + + Sbjct: 333 IQDVLSYISDIERIISRVALGTVKPKDLVALRDSLEQLPILKKLLSEKNTPEITNINNRI 392 Query: 422 EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLK 481 +L +L L+K + ++ P RDGG +++G D LDE +S++D S + + Sbjct: 393 HQLDELVTLLDKAII----ENPPATIRDGGVIKEGFDKELDELKSIKDNSYDFLIKFEEL 448 Query: 482 YAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELI 541 ++T I LK+ +N GY+IE++ A + + +I RQT+ R+ T EL Sbjct: 449 QKQKTGISTLKVGYNRVHGYYIELSKQHADKIPTE------YIRRQTLKASERYITEELK 502 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 + E++I ++ AL E +E L +IE + + + IA ID+ A A + Sbjct: 503 NFEDKILSSKEKALAREKLIYETLLKKVIEYYKQIQETAASIAEIDVLANFAERAIKLKL 562 Query: 602 CRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 +P +N +K+ RH +E + + PFI ND LS K++ L ++TGPNMG Sbjct: 563 SQPKFNNLAKLELKEVRHLAIEHNIDE----PFIPNDTLLS----KDTNTLQIITGPNMG 614 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKST++RQ A ++ +A +GS+VPASYA I +D +++R+G++D+++SGRSTFMVEM ETA Sbjct: 615 GKSTYMRQVAQLIFLAYIGSFVPASYADICDIDTIYTRIGASDDISSGRSTFMVEMTETA 674 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS 781 ILN A+ +S VI+DEIGRGT+T DGL++A A E + L ATH+ ELT+L+K Sbjct: 675 YILNNASAKSLVIMDEIGRGTSTFDGLALAKACAEKFAQIG-AFTLFATHYFELTELAKQ 733 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 N + + + I F+HK + G A SYGIQV KLAG+ V+ A L EK Sbjct: 734 YPNVCNIHFEAKEYKDNIYFMHKAVTGAAKKSYGIQVAKLAGISQDVLESAKQNLYNLEK 793 Query: 842 LYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 H + +IQ + ++N +K+ ++++ ++PL AL L+ +K Sbjct: 794 KQHLAES------TQIQAQFELEPTTQNP--LQQKLDAIDINTITPLEALNILFELK 842 >gi|217970685|ref|YP_002355919.1| DNA mismatch repair protein MutS [Thauera sp. MZ1T] gi|217508012|gb|ACK55023.1| DNA mismatch repair protein MutS [Thauera sp. MZ1T] Length = 897 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 297/913 (32%), Positives = 465/913 (50%), Gaps = 76/913 (8%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 E + + TPMM+QY+ IK +PD+L+FYRMGDFYELFFDDA A+R L ITLT RG+ G Sbjct: 20 EAEIGAHTPMMQQYLRIKQQHPDTLLFYRMGDFYELFFDDAEKAARLLDITLTTRGQSGG 79 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 K I M GVP H Y+ +L+K+G + I EQ+ P NK + R V R+VTPGT Sbjct: 80 KPIRMAGVPFHAVEQYLARLVKLGESVVIAEQVGEP-----GANKGPMERAVSRIVTPGT 134 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREII 198 LT+ LL + L+A + R +AW++++ G F++ D L + R+ P E++ Sbjct: 135 LTDAALLDDRRDSLLLAASLHRGVLGLAWLNLANGDFRLMQCPSDALQAQFERLRPAEVL 194 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEK 257 + L+ +L L +A Q FD + ++ + FG V Sbjct: 195 VPDG-LALPLLDTLAPALRRLADWQ----FDAETGTRLLTTHFGTRDLAGFGVEDLPVAL 249 Query: 258 TAAAAAISYIKKT--QMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AAAA Y + T Q ++ T ERE L +D+A R NLE+ TL G +LL Sbjct: 250 GAAAALYDYAQATQRQTLSHVTGLVVERE--SEYLRLDAATRRNLELTETLRGESSPTLL 307 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFI-------------------- 355 +D +T G R + PL + + R ++ + Sbjct: 308 SLLDTCVTSMGSRWLRHALHHPLRERAEPAARHAAVAELVGTVEGEMSEHTGAAPGGFAL 367 Query: 356 --QNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDL 413 ++ + ++ L+ DV R +R+ + P+D++ +R+ + + Sbjct: 368 GGRDGRIAFAVRSALRGVADVDRITARIALRSARPRDLSALRESLLRLPELAAALAPCRA 427 Query: 414 P--EELRGAV----EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSL 467 P E+ GA+ E L L Q++ ++M+ RDGG + G D LDE R + Sbjct: 428 PLLAEIVGALAIAPEPLALLQQAIAAEPAAMV--------RDGGVIAPGFDTELDELRGI 479 Query: 468 RDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQ 527 + + +L+ + E + I LK++ N G++IEV+ ++A + D + RQ Sbjct: 480 QTNCGEFLMALETRERERSGIPGLKVEFNKVHGFYIEVSRANADKVPDD------YRRRQ 533 Query: 528 TMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIID 587 T+ N R+ T EL E++ +A AL E ++ + + +L ++ +A++D Sbjct: 534 TLKNAERYITPELKAFEDKALSANERALAREKTLYDQVLEVLAAHIPALQRIARALALLD 593 Query: 588 ISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDK 647 ALA A Y +P + + GRHP+VE+ ++ FI ND L+ Sbjct: 594 GLAALAEAALRYGYVQPRFLETPGLTITGGRHPVVERQVES-----FIRNDARLAA---- 644 Query: 648 NSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLA 707 + ++ ++TGPNMGGKSTF+RQ ALI ++A +GS+VPA +G +D +F+R+G++D+LA Sbjct: 645 -TRRMLMITGPNMGGKSTFMRQVALICLLAHVGSFVPADAVELGPLDAIFTRIGASDDLA 703 Query: 708 SGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGL 767 SGRSTFMVEM E A+IL+ AT +S V++DEIGRGT+T DGL++A+A +L E +R L Sbjct: 704 SGRSTFMVEMTEAAAILHGATERSLVLMDEIGRGTSTFDGLALAFAIARHLLEKSRALTL 763 Query: 768 LATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNT 827 ATH+ ELT L+ N L + I+FLH + G A SYGI+V LAG+P Sbjct: 764 FATHYFELTRLNADYPECANVHLDAVEHGHRIVFLHALEEGPASQSYGIEVAALAGIPAA 823 Query: 828 VISRAYDILKTFE--KLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEM 885 VI A L+ E ++ Q D+ PE + + + + + ++ D + Sbjct: 824 VIRDAKRRLRALENREIDAGPQADLFAALPEPEDAPLSHPV-------LSALADIDPDAL 876 Query: 886 SPLTALKTLYAVK 898 SP AL+ LYA+K Sbjct: 877 SPREALERLYALK 889 >gi|71064824|ref|YP_263551.1| DNA mismatch repair protein MutS [Psychrobacter arcticus 273-4] gi|90109854|sp|Q4FV41|MUTS_PSYA2 RecName: Full=DNA mismatch repair protein mutS gi|71037809|gb|AAZ18117.1| DNA mismatch repair protein MutS [Psychrobacter arcticus 273-4] Length = 1058 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 299/936 (31%), Positives = 467/936 (49%), Gaps = 145/936 (15%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRG-KHLGK 79 +L TPMM QY+ +K+ P +L+ YRMGDFYELFFDDA A++ L ITLT+RG G Sbjct: 35 HLADHTPMMVQYLTMKANYPQALLLYRMGDFYELFFDDAKRAAQILDITLTRRGTDKAGN 94 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNK---------------- 123 I M GVP H A+ Y+ +LI G + +CEQI+ R Sbjct: 95 TIAMAGVPFHAADSYMARLIAAGQTVVVCEQIDESATGNARNTSNTPTMGDKQKKDKSKS 154 Query: 124 ---SLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAV--------ARIRTEWAIAWIDIST 172 +++RR VV+ +T GT+T+D L++P + ++A+ ++ + AI+ +D++ Sbjct: 155 AAGTIMRREVVKTLTAGTITDDALIAPNHTPTVVAIDILIPKSNSKQSLQAAISQMDLAA 214 Query: 173 GIFKIST--SNHD-------RLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVA--- 220 G T +NHD ++++ + R P E I E +L +++G + Sbjct: 215 GTLTTQTLSANHDDIEGLKTQMLTVLARFAPSECIIGE---------ALNDSIGGIGEDW 265 Query: 221 --------------VAQPNVFFDHSISESRIADYYNITTVDTFGSF---SQVEKTAAAAA 263 VA + H+ + + + + +D GS + + +++ AA Sbjct: 266 LLWLRQSLDCPIIEVAANDFHRQHA--SATLCQQFGVQRLDGLGSGISDAPLAQSSCAAL 323 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 I Y ++TQ P I E L ID+ ++ NLE+ +S S SLL +++ T Sbjct: 324 IHYARQTQQRQVPQINQLIVEYSDDYLIIDANSQQNLELFTPVS-SNGTSLLSVLNHCQT 382 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSI-----------------NFFIQNPILINPIQK 366 G RL +++ PL ++IN RLD+I N +++ L+ +++ Sbjct: 383 PMGRRLLVQQMKRPLRQHSRINLRLDAIACLLKTDKTSIESNQASNQALKHSSLVISLRE 442 Query: 367 ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKL-K 425 +L S D+ R SR+ + +P+D+ + DGI S + L + + E G + L + Sbjct: 443 MLNSIGDIERISSRIGLMSAKPRDLRKLADGIASSTQLTTLLTDSGVSHEQAGLLPMLMQ 502 Query: 426 KLP------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQ 479 +LP QS+ K + + + P RDGG L G D D L D + + + Sbjct: 503 QLPAQLPAVQSIAKLIERAIITEPPAHIRDGGMLAAGYDDEFDRLTHLHDNIQVTLDEMV 562 Query: 480 LKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLE 539 + E+++ +LK+ N G++ E+ A + FI RQT+ + RF T E Sbjct: 563 ERARLESQLPSLKVGFNKVSGFYFELPKMQAK------NAPAHFIRRQTLKSSERFITDE 616 Query: 540 LIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQ 599 L D+E +A AL E + + L + L S IA ID+ A LA Sbjct: 617 LKDVETEYLSAQTLALTREKQLYHELLTELSSHLAELQQLSAAIAQIDVLSNWAQLAMTY 676 Query: 600 NYCRPII------------DNSTNFIVKDGRHPIVEKTLK-------------------- 627 N+ P++ DN + + GRH +VE L Sbjct: 677 NWQCPVMSNNDENKDSSNTDNQASIDISQGRHVVVEAALNPVNAGNAGNTVNSSNNSSNN 736 Query: 628 ---QQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684 + + F+ANDC L +D N +L L+TGPNMGGKST++RQ ALIV++A GS+VP Sbjct: 737 SGTTRHNSHFVANDCALG--SDANPERLLLITGPNMGGKSTYMRQTALIVLLAHCGSFVP 794 Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744 A+ AHIG +D++F+R+GSAD+LA G+STFMVEMIETA+ILNQATNQS V++DE+GRGTAT Sbjct: 795 AASAHIGDIDRIFTRIGSADDLAGGKSTFMVEMIETANILNQATNQSLVLMDEVGRGTAT 854 Query: 745 LDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR--------FHNATLQVSDSN 796 DGL+IA A + L E C L ATH+ ELT L+++ K N + S+ + Sbjct: 855 TDGLAIAHACVNRLLEIG-CLTLFATHYFELTKLAQNPKESSGSNDKLIRNVHVAASEVD 913 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 ++ LH++ G A S+G+ V K+AG+P V++ A Sbjct: 914 GQLLLLHQIKEGAASSSFGLHVAKMAGIPTQVLNDA 949 >gi|308750968|gb|ADO44451.1| DNA mismatch repair protein MutS [Hydrogenobacter thermophilus TK-6] Length = 833 Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust. Identities = 281/904 (31%), Positives = 465/904 (51%), Gaps = 97/904 (10%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM+ QY K ++PD L+F+R+GDFYELF+ + IPMCG Sbjct: 11 TPMLSQYHHFKRLHPDCLLFFRLGDFYELFYKER---------------------IPMCG 49 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H++ +YI KL+ G+++AICEQ+E +AK LVRR V+R++TPGT E Sbjct: 50 VPYHSSTNYITKLVSKGYKVAICEQMEDATQAK-----GLVRREVIRVITPGTYFEK--- 101 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 D + L V + A+++ STG F + + +++ + + PRE++ + Sbjct: 102 ---DLSGLACVYVKGKRYFCAYLNPSTGEFVAGSFSQEQVYEFLCKFSPREVLLQRG--T 156 Query: 206 HAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAIS 265 H E + T + +F + E I D+ N+ + + G +Q E A Sbjct: 157 HLEPEKYIRTYKTELDEE---YFSRGLEEL-IRDF-NLHSYRSLGFETQEELIPCGCAYL 211 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y+K TQ P + P+ + + ID AR LE+L + G + SL ID ++TG Sbjct: 212 YLKSTQRGFTPFVSKPKPYSDEGYVRIDYRARRGLELLESYEGREDISLFSVIDRTLTGM 271 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 G R + P +I ++ + + I++ LK PD+ R +SR+ Sbjct: 272 GRRRLKFHLLHPFRSRERILQVQSAVEELTEKRQALKEIREYLKDMPDIERLISRISGNV 331 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGA-------------VEKLKKLPQSLE 432 P+D +++ LFL + L E GA ++ L++L Q ++ Sbjct: 332 ATPRDFVLLKKA---------LFLASRLKEGFSGAEFSSSLLKSLFEDMQDLRELAQDID 382 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 TL DD P ++GG ++DG LD R + S+ ++ + K +ET +++LK Sbjct: 383 NTLV----DDPPLHVKEGGLIKDGVSHELDRLRYICQNSESLLREYEEKLRKETGVQSLK 438 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 I +N +GY+IEVT + + F RQT+SN RF T EL LE +I +A Sbjct: 439 IGYNRVMGYYIEVTKPNLKYVP------SYFKRRQTLSNAERFITEELSSLEEKILSAQA 492 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 +E E F L ++ + E++ ++Q + +D +LA +A E+ + +P I + Sbjct: 493 RIKDMEYEIFASLRERVLSKVEAIARSAQKVGFLDYLQSLAYVALEKGWKKPQITDEKVI 552 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 +K+GRHP++E +K ++ ND + + ++TGPNM GKS+++RQ A+ Sbjct: 553 KIKEGRHPLIEAFVKD-----YVPNDTSID-----ERENIMIITGPNMAGKSSYIRQVAV 602 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 + ++A MGS++P A IG V + +R+GS D LA G STFM EM++ ASILN A +S Sbjct: 603 LTLLAHMGSFIPCQEAEIGTVSSIHARIGSGDILALGVSTFMNEMLDVASILNSADERSL 662 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 ++LDE+GRGT+T DG+S+ A +EY+ + + R LLATH+ E+T L + + N + V Sbjct: 663 IVLDEVGRGTSTYDGISLTKALVEYIAKRVKARTLLATHYLEITKLEEEINGIRNYHMAV 722 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 S E + FL+++ G A+ S+GI+V K+AGLP +I+RA +IL +E + L Sbjct: 723 SREGERVNFLYRLKRGSAEGSFGIEVAKMAGLPQELINRAKEILSEYESM---------L 773 Query: 853 YYPEIQTKESKNNLSKNDKL---FVEKIKCLNLDEMSPLTALKTLYAVKAWTLEKYSTDE 909 P ++ +++ N+K F++ I+ +++ +PL AL L +K E+ + Sbjct: 774 QLPFLERVYAESVRIANEKSWQEFLDYIESIDIANTTPLQALLVLSQLK----ERLKMLK 829 Query: 910 DSEP 913 D+ P Sbjct: 830 DASP 833 >gi|2145507|pir||S62790 mismatch DNA recognition protein mutS [validated] - Thermus aquaticus (fragment) Length = 818 Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust. Identities = 285/888 (32%), Positives = 462/888 (52%), Gaps = 112/888 (12%) Query: 27 PMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI--PMC 84 P+++QY+E++ PD L+ +++GDFYE F +DA +R LG+ LT + KD PM Sbjct: 22 PLLQQYVELRDRYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTS---KDFTTPMA 78 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G+P+ + Y ++L+K+G R+A+ +Q+E EA+ LVRR V +L+TPGTLT++ L Sbjct: 79 GIPIRAFDAYAERLLKMGFRLAVADQVEPAEEAE-----GLVRREVTQLLTPGTLTQEAL 133 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFS--- 200 L P ++NYL A+A W +A++D+STG FK + + L ++ R P E++ + Sbjct: 134 L-PREANYLAAIA-TGDGWGLAFLDVSTGEFKGTLLKSKSALYDELFRHRPAEVLLAPEL 191 Query: 201 -EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 E E AE++ F + + A +P G + A Sbjct: 192 RENEAFVAEFRKRFPVMLSEAPFEPQ------------------------GEGPLALRRA 227 Query: 260 AAAAISYIKKTQ---MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 A ++Y + TQ + +P Y D + + + A+ LE+ L G + +L Sbjct: 228 QGALLAYARATQGGALSVRPFRLY----DPGAFVRLPEASLKALEVFEPLRG--QDTLFG 281 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D + T G RL + PL + + RLD + F++ L ++++L D+ R Sbjct: 282 VLDETRTAPGRRLLQAWLRHPLLERGPLEARLDRVERFVREGALREGVRRLLFRLADLER 341 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP--QSLEKT 434 +RL++ R P+D+A +R RS + IL EL+G + + LP L + Sbjct: 342 LATRLELSRASPRDLAALR---RS-LEILP---------ELKGLLGEEVGLPDLSGLLEE 388 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L + L +D P +GG +R+G D LD R + L+ + E T I LK+ Sbjct: 389 LRAALVEDPPLKVSEGGLIREGYDPDLDALRRAHAEGVAYFLDLEAREKERTGIPTLKVG 448 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY++EVT + ++ + QT+ + R+T E+ + E + Sbjct: 449 YNAVFGYYLEVTRPYYEKVPQE------YRPVQTLKDRQRYTLPEMKERERELYRLEALI 502 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 E E F L +++E+L A++++A +D+ ALA +A Y RP + Sbjct: 503 KRREEEVFLALRERARKEAEALREAARILAELDVYAALAEVAVRHGYTRPRFGERLR--I 560 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 + GRHP+VE+ F+ ND +++ +L L+TGPNM GKSTFLRQ ALI Sbjct: 561 RAGRHPVVER------RTAFVPNDLEMAH-------ELVLVTGPNMAGKSTFLRQTALIA 607 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++AQ+GS+VPA A + + D +++R+G++D+LA G+STFMVEM E A +L +AT +S V+ Sbjct: 608 LLAQIGSFVPAEEAELPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALVLKEATERSLVL 667 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDE+GRGT++LDG++IA A E LHE RC L ATH+ ELT L +L R N + + Sbjct: 668 LDEVGRGTSSLDGVAIATALAEALHE-RRCYTLFATHYFELTAL--ALPRLKNLHVAAKE 724 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 G++F H+V+PG A SYG++V ++AGLP V+ RA +L +++ Sbjct: 725 EEGGLVFYHQVLPGPASKSYGVEVAEMAGLPKEVVERARALLSAMAARREGALEEV---- 780 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTL 902 +E++ LN D ++PL AL+ L+ +KA L Sbjct: 781 -------------------LERLLALNPDRLTPLEALRFLHELKALAL 809 >gi|89255725|ref|YP_513086.1| DNA mismatch repair protein MutS [Francisella tularensis subsp. holarctica LVS] gi|156501680|ref|YP_001427745.1| DNA mismatch repair protein MutS [Francisella tularensis subsp. holarctica FTNF002-00] gi|254367101|ref|ZP_04983135.1| DNA mismatch repair protein mutS [Francisella tularensis subsp. holarctica 257] gi|122501231|sp|Q2A5B5|MUTS_FRATH RecName: Full=DNA mismatch repair protein mutS gi|189030725|sp|A7N9Y6|MUTS_FRATF RecName: Full=DNA mismatch repair protein mutS gi|89143556|emb|CAJ78735.1| DNA mismatch repair protein MutS [Francisella tularensis subsp. holarctica LVS] gi|134252925|gb|EBA52019.1| DNA mismatch repair protein mutS [Francisella tularensis subsp. holarctica 257] gi|156252283|gb|ABU60789.1| DNA mismatch repair protein [Francisella tularensis subsp. holarctica FTNF002-00] Length = 844 Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust. Identities = 296/897 (32%), Positives = 478/897 (53%), Gaps = 74/897 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +++ + TPM++QY++IKS D L+FYRMGDFYELFFDDA A+ L ITLT RGK G+ Sbjct: 2 QDISNHTPMIQQYLKIKSQYQDILLFYRMGDFYELFFDDAKKAAELLDITLTARGKSNGE 61 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H A YI K++K G IAICEQ P +K V R V R++TP T+ Sbjct: 62 SIPMAGVPYHAAEAYIAKIVKKGLSIAICEQTGDP-----NTSKGPVERQVTRIITPATV 116 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKIST-SNHDRLISDIMRIDPREI 197 +E+ L + L+++ ++ +A+ + G I+ + T ++ + L + ++++ P+EI Sbjct: 117 SEEAFLDNNQDSILVSIFEKNNKYYLAYTSYTQGKIYLVKTLTSLNELKNTVLKLSPQEI 176 Query: 198 IFSEKELSHAE------------YKSLFETLGNVAVAQPNVFFDHSISESRIADYYN--I 243 I + +EL+ Y S FE A N D +I+ + + Y N + Sbjct: 177 ITNSRELAQQNPFKKPIKALEEWYYSNFE-----AKKYINDSLDTNIANNILNLYKNDQL 231 Query: 244 TTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEIL 303 TT+ + S+ ++ I K + I Y + +D TL ID +R NLE Sbjct: 232 TTIGSILSY-----------LTNILKDTPRHITDISYEQEQD---TLNIDINSRINLE-- 275 Query: 304 RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINP 363 L + + SLL I T G RL ++P + + TR IN +N + Sbjct: 276 --LDNNSKSSLLSIIGKCKTSLGSRLLKRYFSNPTRNLNILATRHSIINSLGENQHFLK- 332 Query: 364 IQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAV 421 IQ +L D+ R +SR+ +G +PKD+ +R + + L + + PE + + Sbjct: 333 IQDVLSYISDIERIISRVALGTVKPKDLVALRYSLEQLPILKKLLSEKNTPEITNINNRI 392 Query: 422 EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLK 481 +L +L L+K + ++ PT RDGG +++G D LDE +S++D S + + Sbjct: 393 HQLDELVTLLDKAII----ENPPTTIRDGGVIKEGFDKELDELKSIKDNSYDFLIKFEEL 448 Query: 482 YAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELI 541 ++ I LK+ +N GY+IE++ A + + ++ RQT+ R+ T EL Sbjct: 449 QKQKIGISTLKVGYNRVHGYYIELSKQHADKIPTE------YVRRQTLKASERYITEELK 502 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 + E+++ ++ AL E ++ L +IE + + + IA ID+ A A + Sbjct: 503 NFEDKVLSSKEKALAREKLIYDTLLKKVIEYYKQIQETAASIAEIDVLANFAERAIKLKL 562 Query: 602 CRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 +P +N +K+ RH +E + + PFI ND LS K++ L ++TGPNMG Sbjct: 563 SQPKFNNLAKLELKEVRHLAIEHNIDE----PFIPNDTLLS----KDTNTLQIITGPNMG 614 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKST++RQ A ++ +A +GS+VPASYA I +D +++R+G++D+++SGRSTFMVEM ETA Sbjct: 615 GKSTYMRQVAQLIFLAYIGSFVPASYADICDIDTIYTRIGASDDISSGRSTFMVEMTETA 674 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS 781 ILN A+ +S VI+DEIGRGT+T DGL++A A E + L ATH+ ELT+L+K Sbjct: 675 YILNNASAKSLVIMDEIGRGTSTFDGLALAKACAEKFAQMG-AFTLFATHYFELTELAKQ 733 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 N + + + I F+HK + G A SYGIQV KLAG+ V+ A + Sbjct: 734 YPNVCNIHFEAKEYKDNIYFMHKAVTGAAKKSYGIQVAKLAGISQDVLESAK------QN 787 Query: 842 LYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 LY+ +K ++Q + ++N +K+ ++++ ++PL AL L+ +K Sbjct: 788 LYNLEKKQQLTESTQVQAQFQLEPTTQNP--LQQKLDAIDINTITPLEALNILFELK 842 >gi|195978976|ref|YP_002124220.1| DNA mismatch repair protein MutS [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975681|gb|ACG63207.1| DNA mismatch repair protein MutS [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 837 Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust. Identities = 281/889 (31%), Positives = 466/889 (52%), Gaps = 74/889 (8%) Query: 29 MRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPV 88 M+QY++IK PD+ + +RMGDFYELF++DA+ A++ L I LT R K+ IPM GVP Sbjct: 1 MQQYLDIKKNYPDAFLLFRMGDFYELFYEDAVKAAQILEIGLTSRNKNADNPIPMAGVPY 60 Query: 89 HTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPT 148 H+ YI LI +GH++AI EQ+E P +A +V+R VV+++TPGT D + Sbjct: 61 HSVQQYIDVLIDLGHKVAIAEQMEDPKQAV-----GVVKREVVQVITPGTAV-DSSRPDS 114 Query: 149 DSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKELSHA 207 +N+L+AV + ++++D+STG F ++ + S+I + +E++ ELS Sbjct: 115 PNNFLVAVDFDGKAYGLSYMDVSTGEFFATDLADFASVKSEIQNLKAKEVLLG-FELSEE 173 Query: 208 EYKSLFETLGNVAVAQPNVFFDH---SISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 E L V Q N+ ++ +S + D+ + VE +AA + Sbjct: 174 EQAIL--------VKQMNLLLSFEMTALEDSPLIDH----------QLTAVELSAAGKLL 215 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSIT 323 Y+ +TQ+ + DI+ L + A +S+L++L +G + SL +D + T Sbjct: 216 HYVHQTQLRELSHLQALVHYDIKDYLQMSYATKSSLDLLENARTGKKHGSLYWLLDETKT 275 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL I PL S I R + I F+ I + LK D+ R SR+ Sbjct: 276 AMGMRLLRTWIDRPLVTSEAILERQEIIQVFLNAFIERTDLSDSLKGVYDIERLSSRVSF 335 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 G+ PKD+ + + + + + L+ L V ++ LP+ LE + S + D Sbjct: 336 GKANPKDLLQLGHTL-AKVPYIKAILEAFNSPYLDKLVNQIDTLPE-LEHLIRSAIDPDA 393 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P +G +R G D LD R + + IA ++ K + + I NLKI +N GY+ Sbjct: 394 PATINEGNIIRTGFDERLDHYRKVMREGTGWIADIEAKERQASGISNLKIDYNKKDGYYF 453 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 VT+S+ ++ D F + T+ N R+ T EL +E ++ A + +E + F Sbjct: 454 HVTNSNLGMVP------DHFFRKATLKNSERYGTAELAKIEGQMLEAREESSSLEYDIFM 507 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 + + + L ++ +A +D+ +LA++A++ +Y RP+ + + + +GRH +VE Sbjct: 508 RIRAQVETYIDRLQQLAKALATVDVLQSLAVVAEKNHYVRPLFNQESKIAIDNGRHAVVE 567 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 K L Q +I N + L+TGPNM GKST++RQ AL VIMAQ+GS+V Sbjct: 568 KVLGVQE---YIPNSISFGPQT-----SIQLITGPNMSGKSTYMRQLALTVIMAQIGSFV 619 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 A A + + D +F+R+G+AD+L SG+STFMVEM+E + +AT S ++ DE+GRGTA Sbjct: 620 AAESASLPLFDAIFTRIGAADDLISGQSTFMVEMMEANHAIKRATPHSLILFDELGRGTA 679 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DG+++A + IEY+H+ + + ATH+HELT+LS L + N + + + + FLH Sbjct: 680 TYDGMALAQSIIEYIHDRVGSKTMFATHYHELTELSTKLTKLVNVHVATLEKDGNVTFLH 739 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKES- 862 K+ G AD SYGI V ++AGLP +++RA +L E + QT+ES Sbjct: 740 KIAEGPADKSYGIHVARIAGLPEDLLARADAVLTKLE--------------AQSQTRESV 785 Query: 863 ----KNNLSKNDKLF---------VEKIKCLNLDEMSPLTALKTLYAVK 898 + ++ LF ++++K +++ ++P+ A+ LY +K Sbjct: 786 LSTTEGRETQQLSLFTDDASSSEVIKRLKSVDVMNLTPIQAMTVLYELK 834 >gi|116074366|ref|ZP_01471628.1| DNA mismatch repair protein [Synechococcus sp. RS9916] gi|116069671|gb|EAU75423.1| DNA mismatch repair protein [Synechococcus sp. RS9916] Length = 918 Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust. Identities = 280/830 (33%), Positives = 457/830 (55%), Gaps = 41/830 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TPM+R Y+E+K+ +P+ ++ YR+GDF+E FF+DA+ SR L +TLT + GK +G+ +PM Sbjct: 106 TPMLRHYVELKAAHPERVLLYRLGDFFECFFEDAIELSRLLELTLTGKEGGKSIGR-VPM 164 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G+P H A Y LI+ G +A+C+Q+E+ AK +L++R++ R++TPGT+ E+ Sbjct: 165 AGIPHHAAERYCADLIRKGRSVALCDQLEA-APAKGSAKGTLLKRDITRVLTPGTVLEEG 223 Query: 144 LLSPTDSNYLMAV------ARIRTEWAIAWIDISTG--IFKISTSNHDRLISDIMRIDPR 195 +LS +N+L AV + W +A D+STG + + + D L ++ R++ Sbjct: 224 MLSARRNNWLAAVVVEPAQGKQPFRWGLASADVSTGELVLQQMEGSSD-LHQELARLEAA 282 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQ 254 E+++ + + L A+A N F +E + ++Y ++T+D G Sbjct: 283 ELVWGGAPDDRPAWCP--DRLQLTAMA--NTPFSRPEAEQALLNHYRLSTLDGLGLQEHP 338 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQ-----STLFIDSAARSNLEILRTL-SG 308 + AA ++Y++ T+ + + P E Q L +D+ R NLE+ T G Sbjct: 339 LALRAAGGLMAYLQDTRPLEGDALHAPPLERPQLRFSGDALVLDAQTRRNLELTSTQRDG 398 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKIL 368 + SLL ID ++T GGR + +PL + I R S++ +Q L ++++L Sbjct: 399 QFQGSLLWAIDRTLTAMGGRCLRRWLEAPLVQTRAIQQRQASVSTLVQTRPLRQALRRLL 458 Query: 369 KSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP 428 + D+ R R G+ +D+ I DG+ + L L++ L + L P Sbjct: 459 RPMGDLERLAGRAGAGQAGARDLVAIADGLERLPQLAGL-LRDRLTDGPDWLAHLLVPDP 517 Query: 429 Q--SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 +L +T+ L D P +GG + DG D LD R+ D +A + + + + Sbjct: 518 DLLTLAQTIRHQLIDTPPLSLSEGGLIHDGVDPLLDGLRNQLDDQDSWLADQEQQERQLS 577 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 NL+++++ GYF+ V+ + ++ + D +I RQT++N RF T +L E Sbjct: 578 GNANLRLQYHRTFGYFLSVSRAKSTAVP------DHWIRRQTLANEERFITPDLKAREGT 631 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 I A E E F L + +E++ A++ +A +D +LA +A + +C P + Sbjct: 632 IFQLKARAAQREYELFCQLREQVGSYAEAIRRAARAVAGLDALSSLADVAATEGWCAPTV 691 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 ++S V+ GRHP+VE+ L ++ F ND L +S L +LTGPN GKS + Sbjct: 692 NDSRELTVEAGRHPVVEQLLVEER---FTPNDVQLG-----DSTDLVVLTGPNASGKSCY 743 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 LRQ LI ++AQ+G +VPA A IGI D++F+RVG+ D+LA+G+STFMVEM ETA+IL+ Sbjct: 744 LRQIGLIQLLAQVGGWVPAQSAAIGIADRIFTRVGAVDDLAAGQSTFMVEMAETANILHH 803 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 A+ +S V+LDEIGRGTAT DGLSIAWA E+L + R + ATH+HEL L++ Sbjct: 804 ASERSLVLLDEIGRGTATFDGLSIAWAVSEHLAGDLQARTVFATHYHELNALAEQRANVA 863 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 N + V ++ + ++FLH+V PG A SYGI+ +LAG+P +V+ RA +L Sbjct: 864 NFQVLVEETGDDLVFLHRVAPGGASRSYGIEAARLAGVPTSVVQRAQQVL 913 >gi|115314221|ref|YP_762944.1| DNA mismatch repair protein MutS [Francisella tularensis subsp. holarctica OSU18] gi|122325742|sp|Q0BNM7|MUTS_FRATO RecName: Full=DNA mismatch repair protein mutS gi|115129120|gb|ABI82307.1| DNA mismatch repair protein MutS [Francisella tularensis subsp. holarctica OSU18] Length = 855 Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust. Identities = 296/897 (32%), Positives = 478/897 (53%), Gaps = 74/897 (8%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 +++ + TPM++QY++IKS D L+FYRMGDFYELFFDDA A+ L ITLT RGK G+ Sbjct: 13 QDISNHTPMIQQYLKIKSQYQDILLFYRMGDFYELFFDDAKKAAELLDITLTARGKSNGE 72 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H A YI K++K G IAICEQ P +K V R V R++TP T+ Sbjct: 73 SIPMAGVPYHAAEAYIAKIVKKGLSIAICEQTGDP-----NTSKGPVERQVTRIITPATV 127 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKIST-SNHDRLISDIMRIDPREI 197 +E+ L + L+++ ++ +A+ + G I+ + T ++ + L + ++++ P+EI Sbjct: 128 SEEAFLDNNQDSILVSIFEKNNKYYLAYTSYTQGKIYLVKTLTSLNELKNTVLKLSPQEI 187 Query: 198 IFSEKELSHAE------------YKSLFETLGNVAVAQPNVFFDHSISESRIADYYN--I 243 I + +EL+ Y S FE A N D +I+ + + Y N + Sbjct: 188 ITNSRELAQQNPFKKPIKALEEWYYSNFE-----AKKYINDSLDTNIANNILNLYKNDQL 242 Query: 244 TTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEIL 303 TT+ + S+ ++ I K + I Y + +D TL ID +R NLE Sbjct: 243 TTIGSILSY-----------LTNILKDTPRHITDISYEQEQD---TLNIDINSRINLE-- 286 Query: 304 RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINP 363 L + + SLL I T G RL ++P + + TR IN +N + Sbjct: 287 --LDNNSKSSLLSIIGKCKTSLGSRLLKRYFSNPTRNLNILATRHSIINSLGENQHFLK- 343 Query: 364 IQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAV 421 IQ +L D+ R +SR+ +G +PKD+ +R + + L + + PE + + Sbjct: 344 IQDVLSYISDIERIISRVALGTVKPKDLVALRYSLEQLPILKKLLSEKNTPEITNINNRI 403 Query: 422 EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLK 481 +L +L L+K + ++ PT RDGG +++G D LDE +S++D S + + Sbjct: 404 HQLDELVTLLDKAII----ENPPTTIRDGGVIKEGFDKELDELKSIKDNSYDFLIKFEEL 459 Query: 482 YAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELI 541 ++ I LK+ +N GY+IE++ A + + ++ RQT+ R+ T EL Sbjct: 460 QKQKIGISTLKVGYNRVHGYYIELSKQHADKIPTE------YVRRQTLKASERYITEELK 513 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 + E+++ ++ AL E ++ L +IE + + + IA ID+ A A + Sbjct: 514 NFEDKVLSSKEKALAREKLIYDTLLKKVIEYYKQIQETAASIAEIDVLANFAERAIKLKL 573 Query: 602 CRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 +P +N +K+ RH +E + + PFI ND LS K++ L ++TGPNMG Sbjct: 574 SQPKFNNLAKLELKEVRHLAIEHNIDE----PFIPNDTLLS----KDTNTLQIITGPNMG 625 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKST++RQ A ++ +A +GS+VPASYA I +D +++R+G++D+++SGRSTFMVEM ETA Sbjct: 626 GKSTYMRQVAQLIFLAYIGSFVPASYADICDIDTIYTRIGASDDISSGRSTFMVEMTETA 685 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS 781 ILN A+ +S VI+DEIGRGT+T DGL++A A E + L ATH+ ELT+L+K Sbjct: 686 YILNNASAKSLVIMDEIGRGTSTFDGLALAKACAEKFAQMG-AFTLFATHYFELTELAKQ 744 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 N + + + I F+HK + G A SYGIQV KLAG+ V+ A + Sbjct: 745 YPNVCNIHFEAKEYKDNIYFMHKAVTGAAKKSYGIQVAKLAGISQDVLESAK------QN 798 Query: 842 LYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 LY+ +K ++Q + ++N +K+ ++++ ++PL AL L+ +K Sbjct: 799 LYNLEKKQQLTESTQVQAQFQLEPTTQNP--LQQKLDAIDINTITPLEALNILFELK 853 >gi|312148183|gb|ADQ30842.1| DNA mismatch repair protein MutS [Borrelia burgdorferi JD1] Length = 862 Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust. Identities = 281/826 (34%), Positives = 458/826 (55%), Gaps = 51/826 (6%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K+ TPM+RQY++IK D+++F+R+G FYE+FFDDA+ S+ L +TLTKR +++P Sbjct: 3 KNVTPMIRQYLDIKKKYKDAVLFFRVGSFYEMFFDDAIEVSKLLNLTLTKR-----ENVP 57 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP HT+ YI+KLI ++AICEQ A + + R VV ++TPG + ++ Sbjct: 58 MCGVPYHTSKEYIRKLILFDKKVAICEQ------ASNSTSGGPLEREVVEVITPGVIIDE 111 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDIST---GIFKISTSNHDRLISDIMRIDPREIIF 199 L+ +NYL+A++ + ++ ++ID+ST GI ++L D+ + P+EII Sbjct: 112 DFLNDDINNYLVAISDYKDYYSFSYIDLSTSSLGIMFYENGFFEKLKRDLEKYSPKEIIV 171 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 SE + EY + P D I+ I +++NI + + G F + EK Sbjct: 172 SEN--FYYEYSEKLNLSRFLINRVPTWHLDKDIAIKTIKEHFNILGLSSLG-FDE-EKPY 227 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQ---STLFIDSAARSNLEILRTLSG-SREQSLL 315 + I + K + ++ DI S +F+D + NLE+++ + S + SL Sbjct: 228 YISIFLIINHIKNNLKNLLSNIDKIDINNDSSYMFLDDVTQVNLELVKNNNDFSSQYSLY 287 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 ++ T G RL I +P+ + ++INTRLD + FF +N L +++ + D+ Sbjct: 288 SVLNDCKTAMGKRLLRGFILNPILNISEINTRLDHVEFFCKNISLTVTLRETFINIWDIE 347 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEK--LKKLPQSLEK 433 R +SR+++ R KD I + + LF K++ E+ + K+ + Sbjct: 348 RIISRIQMKRYIKKDFLFIEKALSVFFTVKKLFDKHNFDYWNFDKFEEDSISKVYFLINS 407 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 +SS D+L ++ G D LD + L+ + + I +KI NLKI Sbjct: 408 AISSA-PDEL---------IKRGYDLKLDNLKDLKINANKYIDQYLESERLLSKINNLKI 457 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 + NN G F EVT S+ + + F+ Q +++ R+ T +LI LE I NA ++ Sbjct: 458 RKTNNRGLFFEVTKSNYA------QVPPHFMESQALNSSKRYKTEKLISLEVDINNAEDN 511 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + E E F+ +++ ++ ++ L ++ A ID+ + LAK+ Y RP++ + + Sbjct: 512 VVAFEQEIFDEIASNVVMHNKVLKKVAEFFAYIDLVVNFGYLAKKNEYKRPVLTSGKEIL 571 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLW-LLTGPNMGGKSTFLRQNAL 672 ++ RHP+VE K +++ F N + N K + L+TGPNM GKST+LRQ AL Sbjct: 572 LEKSRHPVVEHYTK--NTEIFTENFVRI------NKEKYFCLITGPNMAGKSTYLRQVAL 623 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 I +MA +GS+VPAS A IGI DK+F R+G++DN+A G STF+VEM ETA+IL AT +S Sbjct: 624 ITLMAHIGSFVPASKALIGITDKIFCRIGASDNIAKGESTFLVEMNETANILRNATEKSL 683 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 +I+DE+GRGT+T DGL+IA++ IEY+ E + R L ATHFHEL+ ++ + F N ++++ Sbjct: 684 IIMDEVGRGTSTNDGLAIAYSIIEYILEYIKARSLFATHFHELSSINH--QAFINLSMKI 741 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKT 838 ++FL +V + +SYGI V ++AGLP VI RA IL++ Sbjct: 742 EKQGNDLVFLREVEEKPSLNSYGIYVARIAGLPLRVIDRANVILES 787 >gi|319745995|gb|EFV98277.1| DNA mismatch repair protein HexA [Streptococcus agalactiae ATCC 13813] Length = 858 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 275/820 (33%), Positives = 456/820 (55%), Gaps = 45/820 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L I+LT R K+ K IPM G Sbjct: 7 SPGMQQYLDIKENYPDAFLLFRMGDFYELFYDDAVKAAQILEISLTSRNKNAEKPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI L+++G+++AI EQ+E P +A +V+R VV++VTPGT+ E Sbjct: 67 VPYHSAQQYIDVLVELGYKVAIAEQMEDPKKAV-----GVVKREVVQVVTPGTVVES--- 118 Query: 146 SPTDS--NYLMAV-ARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSE 201 + DS N+L+A+ ++ + + +A++D+STG F+ + ++ + + S+I+ + REI+ Sbjct: 119 TKPDSANNFLVAIDSQDQQTFGLAYMDVSTGEFQATLLTDFESVRSEILNLKAREIVVGY 178 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 + L + ++ Q N+ S + R+ D + I + +E +AA Sbjct: 179 Q---------LTDEKNHLLTKQMNLLL--SYEDERLNDIHLIDE-----QLTDLEISAAE 222 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDY 320 + Y+ +TQ + +I+ L + A +++L++L S++ SL +D Sbjct: 223 KLLQYVHRTQKRELSHLQKVVHYEIKDYLQMSYATKNSLDLLENARTSKKHGSLYWLLDE 282 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G R+ I PL +I R D I F+ N + + LK D+ R SR Sbjct: 283 TKTAMGTRMLRTWIDRPLVSMNRIKERQDIIQVFLDYFFERNDLTESLKGVYDIERLASR 342 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + G+ PKD+ + + S I + + L++ EL V K+ +P+ LE +++ ++ Sbjct: 343 VSFGKANPKDLLQLGQTL-SQIPRIKMILQSFNQPELDIIVNKIDTMPE-LESLINTAIA 400 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 + +G ++ G D LD R++ + IA ++ K + I LKI +N G Sbjct: 401 PEAQATITEGNIIKSGFDKQLDNYRTVMREGTGWIADIEAKERAASGIGTLKIDYNKKDG 460 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+ VTSS+ S++ + F + T+ N R+ T EL +E + A + +E + Sbjct: 461 YYFHVTSSNLSLVP------EHFFRKATLKNSERYGTAELAKIEGEMLEAREQSSNLEYD 514 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F + + + L ++ IA +D+ +LA++A+ +Y RP ++ +K+GRH Sbjct: 515 IFMRVRAQVESYIKRLQELAKTIATVDVLQSLAVVAENHHYVRPKFNDEHQIKIKNGRHA 574 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 VEK + Q +I N D + L+TGPNM GKST++RQ AL VIMAQMG Sbjct: 575 TVEKVMGVQE---YIPNSIYFDSQTD-----IQLITGPNMSGKSTYMRQLALTVIMAQMG 626 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 +V A + + D +F+R+G+AD+L SG+STFMVEM+E + +A+++S ++ DE+GR Sbjct: 627 GFVSADEVDLPVFDAIFTRIGAADDLISGQSTFMVEMMEANQAVKRASDKSLILFDELGR 686 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A + IEY+H+ R + + ATH+HELTDLS+ L R N + + + + Sbjct: 687 GTATYDGMALAQSIIEYIHDRVRAKTMFATHYHELTDLSEQLTRLVNVHVATLERDGEVT 746 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 FLHK+ PG AD SYGI V K+AGLP ++ RA DIL E Sbjct: 747 FLHKIEPGPADKSYGIHVAKIAGLPIDLLDRATDILSQLE 786 >gi|55981293|ref|YP_144590.1| DNA mismatch repair protein MutS [Thermus thermophilus HB8] gi|62297839|sp|Q56239|MUTS_THET8 RecName: Full=DNA mismatch repair protein mutS gi|1871501|dbj|BAA09880.1| MutS [Thermus thermophilus] gi|55772706|dbj|BAD71147.1| DNA mismatch repair protein MutS [Thermus thermophilus HB8] Length = 819 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 284/888 (31%), Positives = 462/888 (52%), Gaps = 112/888 (12%) Query: 27 PMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI--PMC 84 P+++QY+E++ PD L+ +++GDFYE F +DA +R LG+ LT + KD PM Sbjct: 23 PLLQQYVELRDRYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTS---KDFTTPMA 79 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G+P+ + Y ++L+K+G R+A+ +Q+E EA+ LVRR V +L+TPGTLT++ L Sbjct: 80 GIPIRAFDAYAERLLKMGFRLAVADQVEPAEEAE-----GLVRREVTQLLTPGTLTQEAL 134 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFS--- 200 L P ++NYL A+A W +A++D+STG FK + + L ++ R P E++ + Sbjct: 135 L-PREANYLAAIA-TGDGWGLAFLDVSTGEFKGTLLKSKSALYDELFRHRPAEVLLAPEL 192 Query: 201 -EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 E E AE++ F + + A +P G + A Sbjct: 193 RENEAFVAEFRKRFPVMLSEAPFEPQ------------------------GEGPLALRRA 228 Query: 260 AAAAISYIKKTQ---MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 A ++Y + TQ + +P Y D + + + A+ LE+ L G + +L Sbjct: 229 QGALLAYARATQGGALSVRPFRLY----DPGAFVRLPEASLKALEVFEPLRG--QDTLFG 282 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D + T G RL + PL + + RLD + F++ L ++++L D+ R Sbjct: 283 VLDETRTAPGRRLLQAWLRHPLLERGPLEARLDRVERFVREGALREGVRRLLFRLADLER 342 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP--QSLEKT 434 +RL++ R P+D+A +R RS + IL EL+G + + LP L + Sbjct: 343 LATRLELSRASPRDLAALR---RS-LEILP---------ELKGLLGEEVGLPDLSGLLEE 389 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L + L +D P +GG +R+G D LD R + L+ + E T I LK+ Sbjct: 390 LRAALVEDPPLKVSEGGLIREGYDPDLDALRRAHAEGVAYFLDLEAREKERTGIPTLKVG 449 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY++EVT + ++ + QT+ + R+T E+ + E + Sbjct: 450 YNAVFGYYLEVTRPYYEKVPQE------YRPVQTLKDRQRYTLPEMKERERELYRLEALI 503 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 E E F L +++E+L A++++A +D+ ALA +A Y RP + Sbjct: 504 KRREEEVFLALRERARKEAEALREAARILAELDVYAALAEVAVRHGYTRPRFGERLR--I 561 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 + GRHP+VE+ F+ ND +++ +L L+TGPNM GKSTFLRQ ALI Sbjct: 562 RAGRHPVVER------RTAFVPNDLEMAH-------ELVLVTGPNMAGKSTFLRQTALIA 608 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++AQ+GS+VPA A + + D +++R+G++D+LA G+STFMVEM E A +L +AT +S V+ Sbjct: 609 LLAQIGSFVPAEEAELPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALVLKEATERSLVL 668 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDE+GRGT++LDG++IA A E LHE RC L ATH+ ELT L +L R N + + Sbjct: 669 LDEVGRGTSSLDGVAIATALAEALHE-RRCYTLFATHYFELTAL--ALPRLKNLHVAAKE 725 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 G++F H+V+PG A SYG++V ++AGLP V+ RA +L +++ Sbjct: 726 EEGGLVFYHQVLPGPASKSYGVEVAEMAGLPKEVVERARALLSAMAARREGALEEV---- 781 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTL 902 +E++ L+ D ++PL AL+ L+ +KA L Sbjct: 782 -------------------LERLLALDPDRLTPLEALRFLHELKALAL 810 >gi|159904312|ref|YP_001551656.1| DNA mismatch repair protein MutS [Prochlorococcus marinus str. MIT 9211] gi|159889488|gb|ABX09702.1| putative DNA mismatch repair protein [Prochlorococcus marinus str. MIT 9211] Length = 908 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 298/846 (35%), Positives = 472/846 (55%), Gaps = 60/846 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TP++R Y+E+K NP+ ++ YR+GDF+E FF+DA+L S+ L +TLT + GK +G+ IPM Sbjct: 89 TPVLRHYVELKKENPERILLYRLGDFFECFFEDAILLSQLLELTLTGKAAGKEIGR-IPM 147 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G+P H+A Y LI+ G +A+C+Q+ES K G L++R V R++TPGT+ E+ Sbjct: 148 AGIPHHSAERYCSMLIQKGLSVALCDQLES--TQNKEG--KLLKRGVTRVLTPGTVIEEG 203 Query: 144 LLSPTDSNYLMAVA------RIRTEWAIAWIDISTGIFKISTS-NHDRLISDIMRIDPRE 196 +L +N+L AV + +W +A+ DISTG F + + D L +I +I+ E Sbjct: 204 MLQAKKNNWLAAVLIEAKPDKNSYQWGLAYADISTGEFFVKEGIDLDALEQEIAKIEASE 263 Query: 197 IIFSEKELSHAEYKSLFETLG--NVAVAQ-PNVFFDHSISESRIADYYNITTVDTFGSFS 253 +I + + +SL + N+ + Q F ++S + ++Y + T++ G F Sbjct: 264 VICQQ-----IDDRSLVKKWCPKNIELTQTAKTPFTLHEAKSSLKNHYKLNTINGLG-FH 317 Query: 254 QVEKT--AAAAAISYIKKTQMVNKP-------TIGYPEREDIQSTLFIDSAARSNLEILR 304 + E AA ++Y+ +T +N + P+ L +D+ R NLEIL Sbjct: 318 EWELAIRAAGGLLAYLHETNPINSVERTRSDIPLEVPQLSVSNEALIVDAQTRRNLEILS 377 Query: 305 TLSGSREQ-SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINP 363 T R Q SLL ID ++T GGR + SPL D +IN R + ++F ++ L Sbjct: 378 TQKDGRFQGSLLWAIDRTLTAMGGRCLRRWLESPLIDLKRINARQEIVSFLVKESSLRQV 437 Query: 364 IQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN--DLPEELRGAV 421 ++K+L+S D+ R R G +D+ I DG+ L L N LP++ + Sbjct: 438 LRKLLRSMADLERLSGRAGAGHAGARDLVAIADGLER----LPLLAANLQSLPKKSPSWL 493 Query: 422 EKLKKLPQSLEK---TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASL 478 L+ + + L K T+ + L ++ P +GG + DG D LD R++ D + S Sbjct: 494 IPLQNVDKDLLKLANTIRNTLINNPPLNLSEGGLIHDGIDPILDGLRNMLDDQNEWLNSQ 553 Query: 479 QLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTL 538 + + + + NL+++++ GYF+ V+ S A+ D+ S +I RQT++N RF T Sbjct: 554 EEQERKASGNNNLRLQYHRTFGYFLAVSKSKAN----DVPS--HWIRRQTLANEERFITP 607 Query: 539 ELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKE 598 +L E +I + E E F L + + + ++ A++ IA +D LA LA Sbjct: 608 DLKTREGKIFQLKARSGQREYELFSDLRQIVGDHAHAIRKAAKSIAGLDALAGLAELAAS 667 Query: 599 QNYCRP-IIDNSTN---FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWL 654 NYC P I+D+ + ++ RHP+VE+ L ++ +P N+ ++ D L + Sbjct: 668 NNYCAPKILDSKSGANKICIEACRHPVVEQMLVEREFQP---NNIEIGDKTD-----LII 719 Query: 655 LTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFM 714 LTGPN GKS +LRQ LI +++Q+GS++PA+ I I D++F+RVG+ D+LA+G+STFM Sbjct: 720 LTGPNASGKSCYLRQIGLIQLLSQVGSWIPATKGLISISDRIFTRVGAVDDLAAGQSTFM 779 Query: 715 VEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHE 774 VEM ETA ILNQATN S V+LDEIGRGTAT DGLSIAW+ E+L + + R + ATH+HE Sbjct: 780 VEMAETAYILNQATNNSLVLLDEIGRGTATFDGLSIAWSVSEFLAKEIKSRTIFATHYHE 839 Query: 775 LTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYD 834 L L+K+ N+ + V + + FLHKV+ G A+ SYGI+ +LAG+P VI A Sbjct: 840 LNSLAKTFTNISNSQVLVKQNGNDLHFLHKVVDGGANRSYGIEAARLAGVPKKVIDTANK 899 Query: 835 ILKTFE 840 +L+ E Sbjct: 900 VLERLE 905 >gi|332969295|gb|EGK08321.1| DNA mismatch repair protein MutS [Psychrobacter sp. 1501(2011)] Length = 1033 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 322/1021 (31%), Positives = 503/1021 (49%), Gaps = 151/1021 (14%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK-HLGK 79 NL TPMM QY+ +K+ P +L+ YRMGDFYELFF+DA A+ L ITLT+RG G Sbjct: 31 NLDDHTPMMVQYLTLKAQYPHALLLYRMGDFYELFFEDAQRAADILDITLTRRGNDKAGN 90 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEA-------------KKRGNKSLV 126 +I M GVP H A Y+ +LI G + ICEQIE + K +K ++ Sbjct: 91 NIAMAGVPFHAAESYMARLIAAGETVVICEQIEETAQPDNPSDNLSDHSKDKPAASKGIM 150 Query: 127 RRNVVRLVTPGTLTEDQLLSPTDSNYLMAV----------ARIRT--EW--AIAWIDIST 172 RR VV+ +T GTLT+D L++P + ++A+ A + +W ++ +D++ Sbjct: 151 RREVVKTLTAGTLTDDALIAPNQTPSVVAIDFQVSKNLQQANLTQAKKWQVGVSQLDLNA 210 Query: 173 GIFKISTSNHD-----------------------------RLISDIMRIDPREIIFSE-- 201 G + T + D RL++ + R P E+I E Sbjct: 211 GNIRTQTLHLDSLLKQPSMGNTFAKDDPLTAVNYETLLKQRLLTVLTRFSPSEVIIPETT 270 Query: 202 -KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTA 259 E H L+ + +VA + F + + +++ TV+ G + S V +T+ Sbjct: 271 TDEWRHWLQDKLYCPVISVAASD----FHPQHAADTVCRQFDVQTVEGLGIADSVVAQTS 326 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 AA I Y ++TQ + P + E + L ID + NLE+ +S + SLL ++ Sbjct: 327 TAALIHYAQQTQQRHTPQLTELIVERDEDYLIIDDISNRNLELFSPVSPTGT-SLLSVVN 385 Query: 320 YSITGAGGRLFAERIASPL---TDSTKINTRLDSINFFIQNPIL--INPIQKILKSSPDV 374 + T G RL + ++ PL +++ RLD+ +FI P L + +++ L+S D+ Sbjct: 386 HCHTPMGKRLLSNQLKRPLRLIQAHSQLQARLDATQWFINQPSLNSLLFLEQQLQSIADI 445 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEE-----LRGAVEKLKKLPQ 429 R SR+ + +P+D+ + IRS + ++ L ++ + P+ Sbjct: 446 ERISSRIALHSAKPRDLKRLAASIRSSEQVALQLQQSGLESSSSQLLIQLFQQLPLLHPE 505 Query: 430 --SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 + L S + ++ P R+GG + G D D L D + + + + + Sbjct: 506 LIDIADLLDSAIVEEPPAHIREGGMIATGFDEDFDRLVHLHDNIQETLDDMAAEARQTYS 565 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 + +LK+ N G++ E+ A+ + D FI RQT+ N RF T L +LE Sbjct: 566 LPSLKVGFNKVSGFYFELPKGQANA------APDAFIRRQTLKNSERFITEPLKNLEVEY 619 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 A +AL+ E ++ L ++ EQ L S IA +D+ + A+LAKE N+ RP +D Sbjct: 620 LEAQTNALVREKALYQGLLVSLSEQLHHLQQLSAAIAQLDVLLNWAMLAKENNWVRPELD 679 Query: 608 NSTNFI-VKDGRHPIVEKTLKQQSS-------------KPFIANDCDLSCPNDKNSGKLW 653 T++I ++ GRH +VE + ++S + F+ANDC L + + +L Sbjct: 680 PETSYIDIEGGRHLVVEAMAQPKASSSKSVTVASSSSAQHFVANDCQLG--TESHQQRLL 737 Query: 654 LLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTF 713 L+TGPNMGGKST++RQ ALIV++A GS+VPAS A IG +D++F+R+GSAD+LA G+STF Sbjct: 738 LITGPNMGGKSTYMRQTALIVLLACCGSFVPASSARIGDIDRIFTRIGSADDLAGGKSTF 797 Query: 714 MVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFH 773 MVEMIETA ILN AT+ S V++DE+GRGT+T DGL+IA A L E L ATH+ Sbjct: 798 MVEMIETAQILNLATSCSLVLMDEVGRGTSTTDGLAIAHACAVQLSEMGSLT-LFATHYF 856 Query: 774 ELTDLSKSLK---RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVIS 830 ELT L+K + + N + S+ ++ LHK+ G A S+G+ V K+AG+P V+ Sbjct: 857 ELTQLAKQDELNSKIRNVHVAASEVEGQLLLLHKIKEGAASSSFGLHVAKMAGIPEQVLI 916 Query: 831 RAYDIL---------------------KTFEKLY-------HHNQKDMRLYYPE------ 856 A L F+K Y H Q++ ++ E Sbjct: 917 AAEHYLTQQKNKHISLRSMQSTDDINHAKFDKAYANADEGTHIAQQNTADFFSEGDLDLV 976 Query: 857 -------IQTKESKNNLSKNDKLFV--EKIKCLNLDEMSPLTALKTLYAVKAWTLEKYST 907 QTKE+K N K E++ L DE++P AL LY +K +K T Sbjct: 977 QEPSPMTYQTKETKEAKLLNTKAMAVFEQLNALQPDELTPKQALDYLYELK----QKVKT 1032 Query: 908 D 908 D Sbjct: 1033 D 1033 >gi|46199262|ref|YP_004929.1| DNA mismatch repair protein [Thermus thermophilus HB27] gi|48428292|sp|P61671|MUTS_THET2 RecName: Full=DNA mismatch repair protein mutS gi|46196887|gb|AAS81302.1| DNA mismatch repair protein mutS [Thermus thermophilus HB27] Length = 811 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 284/888 (31%), Positives = 462/888 (52%), Gaps = 112/888 (12%) Query: 27 PMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI--PMC 84 P+++QY+E++ PD L+ +++GDFYE F +DA +R LG+ LT + KD PM Sbjct: 15 PLLQQYVELRDRYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTS---KDFTTPMA 71 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G+P+ + Y ++L+K+G R+A+ +Q+E EA+ LVRR V +L+TPGTLT++ L Sbjct: 72 GIPIRAFDAYAERLLKMGFRLAVADQVEPAEEAE-----GLVRREVTQLLTPGTLTQEAL 126 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFS--- 200 L P ++NYL A+A W +A++D+STG FK + + L ++ R P E++ + Sbjct: 127 L-PREANYLAAIA-TGDGWGLAFLDVSTGEFKGTLLKSKSALYDELFRHRPAEVLLAPEL 184 Query: 201 -EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 E E AE++ F + + A +P G + A Sbjct: 185 RENEAFVAEFRKRFPVMLSEAPFEPQ------------------------GEGPLALRRA 220 Query: 260 AAAAISYIKKTQ---MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 A ++Y + TQ + +P Y D + + + A+ LE+ L G + +L Sbjct: 221 QGALLAYARATQGGALSVRPFRLY----DPGAFVRLPEASLKALEVFEPLRG--QDTLFG 274 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D + T G RL + PL + + RLD + F++ L ++++L D+ R Sbjct: 275 VLDETRTAPGRRLLQAWLRHPLLERGPLEARLDRVERFVREGALREGVRRLLFRLADLER 334 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP--QSLEKT 434 +RL++ R P+D+A +R RS + IL EL+G + + LP L + Sbjct: 335 LATRLELSRASPRDLAALR---RS-LEILP---------ELKGLLGEEVGLPDLSGLLEE 381 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L + L +D P +GG +R+G D LD R + L+ + E T I LK+ Sbjct: 382 LRAALVEDPPLKVSEGGLIREGYDPDLDALRRAHAEGVAYFLDLEAREKERTGIPTLKVG 441 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY++EVT + ++ + QT+ + R+T E+ + E + Sbjct: 442 YNAVFGYYLEVTRPYYEKVPQE------YRPVQTLKDRQRYTLPEMKERERELYRLEALI 495 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 E E F L +++E+L A++++A +D+ ALA +A Y RP + Sbjct: 496 KRREEEVFLALRERARKEAEALREAARILAELDVYAALAEVAVRHGYTRPRFGERLR--I 553 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 + GRHP+VE+ F+ ND +++ +L L+TGPNM GKSTFLRQ ALI Sbjct: 554 RAGRHPVVER------RTAFVPNDLEMAH-------ELVLVTGPNMAGKSTFLRQTALIA 600 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++AQ+GS+VPA A + + D +++R+G++D+LA G+STFMVEM E A +L +AT +S V+ Sbjct: 601 LLAQIGSFVPAEEAELPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALVLKEATERSLVL 660 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDE+GRGT++LDG++IA A E LHE RC L ATH+ ELT L +L R N + + Sbjct: 661 LDEVGRGTSSLDGVAIATALAEALHE-RRCYTLFATHYFELTAL--ALPRLKNLHVAAKE 717 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 G++F H+V+PG A SYG++V ++AGLP V+ RA +L +++ Sbjct: 718 EEGGLVFYHQVLPGPASKSYGVEVAEMAGLPKEVVERARALLSAMAARREGALEEV---- 773 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTL 902 +E++ L+ D ++PL AL+ L+ +KA L Sbjct: 774 -------------------LERLLALDPDRLTPLEALRFLHELKALAL 802 >gi|67809926|gb|AAY81981.1| DNA mismatch repair [Wolbachia pipientis] Length = 625 Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust. Identities = 251/648 (38%), Positives = 388/648 (59%), Gaps = 58/648 (8%) Query: 116 EAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIF 175 EAKKRG KS+V+R+VVR+VTPGT+ ED LL +NYL ++ E+AI+W+++STG F Sbjct: 1 EAKKRGYKSIVKRDVVRVVTPGTIIEDSLLEDKSNNYLASIVEQNDEYAISWLELSTGKF 60 Query: 176 KISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISES 235 + ++ L SD++RI PRE++ SEK + +S+ + FF++S S Sbjct: 61 FHTLTSLKALDSDLLRISPRELLISEKFTEDEKIRSVLKNYKISITQHAQSFFEYSKSHR 120 Query: 236 RIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSA 295 + ++Y I + + G+FS+VE A A + Y++ TQ + P + +P+ Q+ + ID++ Sbjct: 121 TLCEFYKIRELGSIGNFSKVEIMACGALLEYVRVTQRGSIPRLEFPKTYKQQNFMLIDAS 180 Query: 296 ARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFI 355 AR NLE+ T G ++ SL+ ID+++T +GGRL + +ASPL S IN RL + FF+ Sbjct: 181 ARRNLELFSTQFGEKKGSLISVIDHTVTASGGRLLKQMLASPLACSKAINLRLSTAQFFV 240 Query: 356 QNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFL------ 409 N I++IL + PD+ RSLSRL +GRG PKD+ +++ G+ + L+ FL Sbjct: 241 NNHEPRRKIREILSNIPDIERSLSRLILGRGSPKDMNLLKIGLGKTLE-LSEFLSTLHNY 299 Query: 410 ----KNDLPEELRGAVEKLKKLPQSLEKTLSS-------------------------MLS 440 K+++ ++ +K P S + +SS +L Sbjct: 300 CLSEKSEINSQMSFQCLTKEKEPVSTTQVISSDESELSTIHKSLGNHKDLFELLNSAILD 359 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 ++L + K +GGF+ ++ L E + + S +++ L+ Y + T I LKI HNN LG Sbjct: 360 NNLSSVK-EGGFIHSKYNSELSELSYILNNSNKLVTKLRESYRDLTGIAALKILHNNILG 418 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y++EV+++ + D FIHRQ+++N R+TT EL +LEN+I A ++A+ +E++ Sbjct: 419 YYVEVSANHKI-------TSDIFIHRQSLANSMRYTTNELKELENKILTARDAAIGLEMK 471 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F L + + ++SE + A+ +A +DI A A LA + NY +PIID+S F + GRHP Sbjct: 472 IFSELCSEVAKESEKIALAANALAKLDIRTAFAELAVQNNYVKPIIDDSKEFNICSGRHP 531 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE K FIAN +L+ + L+TGPNM GKSTFLRQNALI ++A MG Sbjct: 532 VVEVNNK------FIANSINLA--------GIHLITGPNMAGKSTFLRQNALIAVLAHMG 577 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 S+VPA AHIG++DK+FSRVG+ DN+ +G STFMVEMIETA+I+NQAT Sbjct: 578 SFVPAESAHIGVIDKIFSRVGATDNITAGYSTFMVEMIETATIVNQAT 625 >gi|77408124|ref|ZP_00784870.1| DNA mismatch repair protein MutS [Streptococcus agalactiae COH1] gi|77173224|gb|EAO76347.1| DNA mismatch repair protein MutS [Streptococcus agalactiae COH1] Length = 858 Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust. Identities = 274/820 (33%), Positives = 456/820 (55%), Gaps = 45/820 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L I+LT R K+ K IPM G Sbjct: 7 SPGMQQYLDIKENYPDAFLLFRMGDFYELFYDDAVKAAQILEISLTSRNKNAEKPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI L+++G+++AI EQ+E P +A +V+R VV++VTPGT+ E Sbjct: 67 VPYHSAQQYIDVLVELGYKVAIAEQMEDPKKAV-----GVVKREVVQVVTPGTVVES--- 118 Query: 146 SPTDS--NYLMAV-ARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSE 201 + DS N+L+A+ ++ + + +A++D+STG F+ + ++ + + S+I+ + REI+ Sbjct: 119 TKPDSANNFLVAIDSQDQQTFGLAYMDVSTGEFQATLLTDFESVRSEILNLKAREIVVGY 178 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 + L + ++ Q N+ S + R+ D + I + +E +AA Sbjct: 179 Q---------LTDEKNHLLTKQMNLLL--SYEDERLNDIHLIDE-----QLTDLEISAAE 222 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDY 320 + Y+ +TQ + +I+ L + A +++L++L S++ SL +D Sbjct: 223 KLLQYVHRTQKRELSHLQKVVHYEIKDYLQMSYATKNSLDLLENARTSKKHGSLYWLLDE 282 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G R+ I PL +I R D I F+ N + + LK D+ R SR Sbjct: 283 TKTAMGTRMLRTWIDRPLVSMNRIKERQDIIQVFLDYFFERNDLTESLKGVYDIERLASR 342 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + G+ PKD+ + + S I + + L++ EL V K+ +P+ LE +++ ++ Sbjct: 343 VSFGKANPKDLLQLGQTL-SQIPRIKMILQSFNQPELDIIVNKIDTMPE-LESLINTAIA 400 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 + +G ++ G D LD R++ + IA ++ K + I LKI +N G Sbjct: 401 PEAQATITEGNIIKSGFDKQLDNYRTVMREGTGWIADIEAKERAASGIGTLKIDYNKKDG 460 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+ VT+S+ S++ + F + T+ N R+ T EL +E + A + +E + Sbjct: 461 YYFHVTNSNLSLVP------EHFFRKATLKNSERYGTAELAKIEGEMLEAREQSSNLEYD 514 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F + + + L ++ IA +D+ +LA++A+ +Y RP ++ +K+GRH Sbjct: 515 IFMRVRAQVESYIKRLQELAKTIATVDVLQSLAVVAENHHYVRPKFNDEHQIKIKNGRHA 574 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 VEK + Q +I N D + L+TGPNM GKST++RQ AL VIMAQMG Sbjct: 575 TVEKVMGVQE---YIPNSIYFDSQTD-----IQLITGPNMSGKSTYMRQLALTVIMAQMG 626 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 +V A + + D +F+R+G+AD+L SG+STFMVEM+E + +A+++S ++ DE+GR Sbjct: 627 GFVSADEVDLPVFDAIFTRIGAADDLISGQSTFMVEMMEANQAVKRASDKSLILFDELGR 686 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A + IEY+H+ R + + ATH+HELTDLS+ L R N + + + + Sbjct: 687 GTATYDGMALAQSIIEYIHDRVRAKTMFATHYHELTDLSEQLTRLVNVHVATLERDGEVT 746 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 FLHK+ PG AD SYGI V K+AGLP ++ RA DIL E Sbjct: 747 FLHKIEPGPADKSYGIHVAKIAGLPIDLLDRATDILSQLE 786 >gi|194323303|ref|ZP_03057087.1| DNA mismatch repair protein MutS [Francisella tularensis subsp. novicida FTE] gi|194322667|gb|EDX20147.1| DNA mismatch repair protein MutS [Francisella tularensis subsp. novicida FTE] Length = 835 Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust. Identities = 301/889 (33%), Positives = 474/889 (53%), Gaps = 74/889 (8%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M++QY++IKS D L+FYRMGDFYELFFDDA A+ L ITLT RGK G+ IPM GVP Sbjct: 1 MIQQYLKIKSQYQDILLFYRMGDFYELFFDDAKKAAELLDITLTARGKSNGESIPMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A YI K++K G IAICEQ P +K V R V R++TP T++E+ L Sbjct: 61 YHAAEAYIAKIVKKGLSIAICEQTGDP-----NTSKGPVERQVTRIITPATVSEEAFLDS 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTG-IFKIST-SNHDRLISDIMRIDPREIIFSEKELS 205 + L+++ ++ +A+ + G I+ + T ++ + L + ++++ P+EII + +EL+ Sbjct: 116 NQDSILVSIFEKNNKYYLAYTSYTQGKIYLVKTLTSLNELKNTVLKLSPQEIITNSRELA 175 Query: 206 HAE------------YKSLFETLGNVAVAQPNVFFDHSISESRIADYYN--ITTVDTFGS 251 Y S FE A N D +I+ + + Y N +TT+ + S Sbjct: 176 QQNPFKKPIKALEEWYYSNFE-----AKKYINDSLDTNIANNILNLYKNDQLTTIGSILS 230 Query: 252 FSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 + ++ I K + I Y + +D TL ID +R NLE L S + Sbjct: 231 Y-----------LTNILKDTPRHITDISYEQEQD---TLNIDINSRINLE----LDNSSK 272 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 SLL I T G RL ++P + + TR + IN ++N + IQ +L Sbjct: 273 SSLLSIIGKCKTSLGSRLLKRYFSNPTRNLNILATRHNIINSLVENQHFLK-IQDVLSYI 331 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEKLKKLPQ 429 D+ R +SR+ +G +PKD+ +RD + + L + + PE + + +L +L Sbjct: 332 SDIERIISRVALGTVKPKDLVALRDSLEQLPILKKLLSEKNTPEITNINNRIHQLDELVT 391 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 L+K + ++ P RDGG +++G D LDE +S++D S + + ++T I Sbjct: 392 LLDKAII----ENPPATIRDGGVIKEGFDKELDELKSIKDNSYDFLIKFEELQKQKTGIS 447 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LK+ +N GY+IE++ A + + +I RQT+ R+ T EL + E++I + Sbjct: 448 TLKVGYNRVHGYYIELSKQHADKIPTE------YIRRQTLKASERYITEELKNFEDKILS 501 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 + AL E +E L +IE + + + IA ID+ A A + +P +N Sbjct: 502 SKEKALAREKLIYETLLKKVIEYYKQIQETAASIAEIDVLANFAERAIKLKLSQPKFNNL 561 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 +K+ RH +E + + PFI ND LS K++ L ++TGPNMGGKST++RQ Sbjct: 562 AKLELKEVRHLAIEHNIDE----PFIPNDTLLS----KDTNTLQIITGPNMGGKSTYMRQ 613 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 A ++ +A +GS+VPASYA I +D +++R+G++D+++SGRSTFMVEM ETA ILN A+ Sbjct: 614 VAQLIFLAYIGSFVPASYADICDIDTIYTRIGASDDISSGRSTFMVEMTETAYILNNASA 673 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 +S VI+DEIGRGT+T DGL++A A E + L ATH+ ELT+L+K N Sbjct: 674 KSLVIMDEIGRGTSTFDGLALAKACAEKFAQIG-AFTLFATHYFELTELAKQYPNVCNIH 732 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 + + + I F+HK + G A SYGIQV KLAG+ V+ A L EK H + Sbjct: 733 FEAKEYKDNIYFMHKAVTGAAKKSYGIQVAKLAGISQDVLESAKQNLYNLEKKQHLAES- 791 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +IQ + ++N +K+ ++++ ++PL AL L+ +K Sbjct: 792 -----TQIQAQFELEPTTQNP--LQQKLDAIDINTITPLEALNILFELK 833 >gi|307128585|ref|YP_003880615.1| DNA mismatch repair protein MutS [Candidatus Sulcia muelleri CARI] gi|306483047|gb|ADM89917.1| DNA mismatch repair protein MutS [Candidatus Sulcia muelleri CARI] Length = 832 Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust. Identities = 282/824 (34%), Positives = 466/824 (56%), Gaps = 37/824 (4%) Query: 26 TPMMRQYIEIKSINPD-SLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 TP+MRQY EI++ PD +L+ +R+GDFYE+F +DA+ S+ L I LTKR K+ I + Sbjct: 13 TPLMRQYFEIRNKYPDDTLILFRVGDFYEMFGNDAIQCSKILNIVLTKRNKN--SSIELA 70 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G P H+ +Y+ KLIK G R+AIC+Q+E + KK + R V ++TPG + ++ Sbjct: 71 GFPYHSIENYLPKLIKSGFRVAICDQLEKKKKNKKI-----INRGVTEIITPGVIINSEV 125 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 L SN+L A+ + I+++DISTG F + ++ + + +P E+++ + + Sbjct: 126 LESKTSNFLAAIHIENNKIGISFLDISTGEFFVGEGSNSYVDKFFKKFNPNEVLYKQNKK 185 Query: 205 SHAEYKSLFETLGN--VAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 S + + +GN + + FD+ + + ++ ++ F + AA Sbjct: 186 S-----DITKIIGNKYYSNGMEDWVFDYLSAYENLLRHFKTNSLKGFKIENLYNGIIAAG 240 Query: 263 AI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 AI +Y+ + I + + +D NLEI+++ + +L+ +D + Sbjct: 241 AILNYVCSICNIKISHIYNITKLVEDEYVSLDDFTLENLEIIKS-KNEKAITLINILDNT 299 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 I+ GGRL + I PL + + R + ++ F+ N + I K +++ D+ R S++ Sbjct: 300 ISPMGGRLLKKWITFPLKNIFDLKKRHNIVSLFLNNKNIYKQISKKIRNISDIERLTSKI 359 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ---SLEKTLSSM 438 + P DI ++ ++ +I N+ L N +EL+ +KK +EK LS Sbjct: 360 VSYKVNPHDIILLSISLKKITDIKNI-LFNSKIDELKNISYNIKKCDNIYIHIEKILSMS 418 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 ++ + G + G LDE R++ + SK I ++ + + T IKNLKI NN Sbjct: 419 STNSI----NKGNIILPGFSKKLDEFRNIINSSKEYINNIYKREKQNTGIKNLKILFNNI 474 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 G++IE+ S+ KK + S +I +Q + N R+ T EL + E +I ++ IE Sbjct: 475 FGFYIEI----KSLYKKKVPS--HWILKQKLFNCERYITDELKNHEMKILSSKEKIFYIE 528 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 F L + + + ++ L S+ IA IDI ++ A A NY RP ++ S N +KDGR Sbjct: 529 KTIFSKLIDYLSKYTDILQFNSKSIAEIDILMSFAKCAIANNYIRPELNKSFNISIKDGR 588 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP++EK + +K +I ND + + N ++ ++TGPNM GKS LRQ ALI++MAQ Sbjct: 589 HPVIEKQI-SSYNKSYIPNDIIM----NNNDSQIIIITGPNMSGKSAILRQTALIILMAQ 643 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GSYVPASYA IGIVDK+FSRVGS+DN++ G STFM EM ETASI+N +++SF+ILDEI Sbjct: 644 IGSYVPASYASIGIVDKIFSRVGSSDNISMGESTFMKEMNETASIINNLSDRSFLILDEI 703 Query: 739 GRGTATLDGLSIAWATIEYLHET-NRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 GRGT+ DG+S+AW+ IE+L++ ++ + L ATH+HEL ++S + N ++ V +E Sbjct: 704 GRGTSNDDGISLAWSIIEFLNKNIHKPKTLFATHYHELNNISNYINNIKNYSISVKIIDE 763 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 IIF K++ I++ SYGI + K+AG+P+++I+RA ++ EK Sbjct: 764 NIIFTRKLLNNISNKSYGIHIAKIAGMPDSIINRANELYSIIEK 807 >gi|322371551|ref|ZP_08046097.1| DNA mismatch repair protein MutS [Haladaptatus paucihalophilus DX253] gi|320548842|gb|EFW90510.1| DNA mismatch repair protein MutS [Haladaptatus paucihalophilus DX253] Length = 888 Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust. Identities = 295/935 (31%), Positives = 489/935 (52%), Gaps = 88/935 (9%) Query: 1 MTKEFSSPQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDAL 60 M +P+K+ +L TPMMRQY E+ DS+V +++GDFYE F + A Sbjct: 1 MDAALGAPEKMAEHSDEL-------TPMMRQYFELCRQYDDSMVLFQVGDFYETFCEAAE 53 Query: 61 LASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR 120 SR L ITLT+R + G PM G+P+ A YI+ L+ G+R+A+ +Q++ P +A Sbjct: 54 RCSRILEITLTQREDNTGT-YPMAGIPIDNAESYIEALLDAGYRVAVADQVQDPADAS-- 110 Query: 121 GNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST- 179 +V R V R+VTPGTLTED+LL D+N++ ++A + +A +D+STG F +T Sbjct: 111 ---GVVERAVTRVVTPGTLTEDELLHGDDNNFVASLAHDEG-YGLAILDVSTGDFYATTV 166 Query: 180 SNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVF------------ 227 + +++ R P E I ++ A + G P+VF Sbjct: 167 ETASEVRNEVERFAPTEAI-----VAPALDPDSAASDGATDTQTPDVFDADCMVTEYAGA 221 Query: 228 -FDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISY---IKKTQMVNKPT------ 277 FD + +ADY+ D + + E A A +SY ++ + V + Sbjct: 222 TFDIDGASELVADYFG--PPDRLLA-TDAEIRACGALLSYAEYVRGGEGVTEDDTDDTDT 278 Query: 278 ----IGYPEREDIQSTLFIDSAARSNLEIL--RTLSGSREQSLLKTIDYSITGAGGRLFA 331 + + R D +S + +D+ A ++LE+ R + G + +L+ +D + G R Sbjct: 279 RLDYLNHLTRYDPRSYMLLDAVALTSLELFSSRAVHGQDDATLVGVLDETACALGSRKLT 338 Query: 332 ERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDI 391 + + PL + +I RLD++ + + ++L++ D+ R +SR+ GR +D+ Sbjct: 339 DWLRRPLLERDRIEARLDAVEEWTTTVQAREEVHELLRNVYDIERLISRVSRGRANARDL 398 Query: 392 AVIRDGIRSGINILNLFLKNDLPEELRGAVE--KLKKLPQSLEKT------LSSMLSDDL 443 ++ L + D+ E + G VE KL++L ++L++ + + ++ Sbjct: 399 RSLK---------ATLDVVPDIAEAMEG-VESPKLRRLHENLDEMADVRDRIGRAIPEEP 448 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P +GG ++ G D LD+ R K I L+ E T I +LK+ +N GY+I Sbjct: 449 PIEITEGGVIKSGYDDELDDLRETERSGKAWIDDLEASERERTGIGSLKVGYNQVHGYYI 508 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EVT + + +D + RQT+ N RF T EL + E+ I A A +E + F Sbjct: 509 EVTDPNLDKVPED------YTRRQTLKNSERFYTPELKEREDEIVRAEQRADELEYDLFC 562 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 + A+ E+SE + + ++ +A +D +ALA +A + Y RP I +++GRHP+VE Sbjct: 563 EVREAVAEESERVQSLAETLAELDTLVALAEVAAKHGYSRPEI-VPEGIEIRNGRHPVVE 621 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 +T QSS F+ ND L + L ++TGPNM GKST++RQ ALI I+AQ+GS+V Sbjct: 622 RT---QSS--FVPNDTRL------DHDTLAVITGPNMAGKSTYMRQVALITILAQVGSFV 670 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA A + +VD++F+RVG++D++A GRSTFMVEM E A IL AT++S ++LDE+GRGT+ Sbjct: 671 PADEARLELVDRVFTRVGASDDIAGGRSTFMVEMTELADILGNATDRSLILLDEVGRGTS 730 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DG +IA + E++H+ + L ATH H+LT ++ L N ++ + ++F H Sbjct: 731 TTDGFAIARSVTEHVHDEIGAKTLFATHHHDLTAVADDLPNAINLHFGATERDGEVVFDH 790 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESK 863 + G SYG++V +LAG+P +VI R+ D+L E +R P +S Sbjct: 791 HISEGATMASYGVEVAQLAGVPESVIRRSKDLLAEDEGDSVDEGTCLRDADPSDSAPQSP 850 Query: 864 NNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 S ++ + E ++ N+ + +PL AL+ L +K Sbjct: 851 PVTSASNDVLAE-LRRTNVADTTPLEALQLLDRLK 884 >gi|256370654|ref|YP_003108479.1| DNA mismatch repair protein MutS [Candidatus Sulcia muelleri SMDSEM] gi|256009446|gb|ACU52806.1| DNA mismatch repair protein MutS [Candidatus Sulcia muelleri SMDSEM] Length = 844 Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust. Identities = 282/831 (33%), Positives = 463/831 (55%), Gaps = 51/831 (6%) Query: 26 TPMMRQYIEIKSINPD-SLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 TP+MRQY EI+ PD +L+ +R+GDFYE+F +DA+ S+ L I LTKR I + Sbjct: 7 TPLMRQYFEIRKKYPDDTLILFRVGDFYEMFGNDAIKCSKILNIVLTKRNNKKNSSIELA 66 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G P H+ ++Y+ KLIK G R+AIC+Q+E + K + +++R V ++TPG + ++ Sbjct: 67 GFPYHSIDNYLPKLIKSGFRVAICDQLE---KKKDQLENKILKRGVTEIITPGVIINSEV 123 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 L SN+L A+ + I+++DISTG F + + + + + +P E+++ +K + Sbjct: 124 LEAKKSNFLAAIHIETNKIGISFLDISTGEFFVGEGSSSYIDQFLNKFNPNEVLY-KKNI 182 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 KS+ + + + FD+ + + ++ ++ F + AA AI Sbjct: 183 KSDWLKSIKKKY--YSNGMEDWVFDYLSAYENLLMHFKTNSLKGFNIENLYNGIIAAGAI 240 Query: 265 -SYI------KKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 +Y+ K + + N I E E + +D NLEI+ + + SL+ Sbjct: 241 LNYVGSICNMKISHISN--IINLIEDEYVA----LDDFTLENLEIINS-KNEKAISLINI 293 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D +I+ GGRL + I P+ + + R ++ +N L I + LK+ D+ R Sbjct: 294 LDNTISPMGGRLLKKWITFPIKNILDLKKRQKIVSLLRRNNNLSKEISEKLKNISDIERL 353 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK---LPQSLEKT 434 S++ + P D+ ++ ++ I NL ++ + EEL+ +K+KK + +EK Sbjct: 354 TSKIVSYKVNPHDLILLSKSLKKITEIKNLLFQSKM-EELKRLSDKIKKCDHIYNQIEKI 412 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 LS + G + G LDE R++ + SK+ I + + + + IK LKI Sbjct: 413 LSMSYNK--------GNIILPGFSKELDELRTIINSSKKSINQIFNREQKNSGIKKLKIL 464 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIH---RQTMSNLTRFTTLELIDLENRITNAT 551 +NN G+FIE+ K+LE K H +Q +SN R+ T EL D E +I + Sbjct: 465 YNNIFGFFIEI---------KNLEKKKVPSHWNLKQKLSNCERYITNELKDYEIKILSTK 515 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + IE F L +++ +++E L S++IA IDI ++ A A E NY P ++ S N Sbjct: 516 EKIIFIENNIFSKLIDSLSKETERLQYNSKLIAEIDIFLSFAKSALENNYICPKLNESFN 575 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 +KDGRHP++EK + +K +I ND + + N ++ ++TGPNM GKS LRQ A Sbjct: 576 IFIKDGRHPVIEKQI-YSYNKSYIPNDIIM----NNNDSQIIIITGPNMAGKSAILRQTA 630 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LI++MAQ+GSYVPASYA IGI+DK+FSRVGS+DN++ G STFM EM ETA I+N +++S Sbjct: 631 LIILMAQIGSYVPASYASIGIIDKIFSRVGSSDNISMGESTFMKEMNETARIINNLSDRS 690 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHET-NRCRGLLATHFHELTDLSKSLKRFHNATL 790 F+ILDEIGRGT+ DG+++AW+ IE+L++ ++ + L ATH+HEL ++S + N ++ Sbjct: 691 FLILDEIGRGTSNEDGMALAWSIIEFLNKNIHKPKTLFATHYHELNNISNYINNIKNYSV 750 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 V ++ +IF K++ SYGI + KLAG+P+ +I+RA L E+ Sbjct: 751 SVKKKDDNLIFTRKLVTPATAKSYGIHIAKLAGIPDAIINRANKFLAKRER 801 >gi|76786970|ref|YP_330630.1| DNA mismatch repair protein MutS [Streptococcus agalactiae A909] gi|77405088|ref|ZP_00782187.1| DNA mismatch repair protein MutS [Streptococcus agalactiae H36B] gi|77410851|ref|ZP_00787208.1| DNA mismatch repair protein MutS [Streptococcus agalactiae CJB111] gi|109923766|sp|Q3JYM3|MUTS_STRA1 RecName: Full=DNA mismatch repair protein mutS gi|76562027|gb|ABA44611.1| DNA mismatch repair protein HexA [Streptococcus agalactiae A909] gi|77163069|gb|EAO74023.1| DNA mismatch repair protein MutS [Streptococcus agalactiae CJB111] gi|77176231|gb|EAO79001.1| DNA mismatch repair protein MutS [Streptococcus agalactiae H36B] Length = 858 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 282/893 (31%), Positives = 486/893 (54%), Gaps = 64/893 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L I+LT R K+ K IPM G Sbjct: 7 SPGMQQYLDIKENYPDAFLLFRMGDFYELFYDDAVKAAQILEISLTSRNKNAEKPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI L+++G+++AI EQ+E P +A +V+R VV++VTPGT+ E Sbjct: 67 VPYHSAQQYIDVLVELGYKVAIAEQMEDPKKAV-----GVVKREVVQVVTPGTVVES--- 118 Query: 146 SPTDS--NYLMAV-ARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSE 201 + DS N+L+A+ ++ + + +A++D+STG F+ + ++ + + S+I+ + REI+ Sbjct: 119 TKPDSANNFLVAIDSQDQQTFGLAYMDVSTGEFQATLLTDFESVRSEILNLKAREIVVGY 178 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 + L + ++ Q N+ S + R+ D + I + +E +AA Sbjct: 179 Q---------LTDEKNHLLTKQMNLLL--SYEDERLNDIHLIDE-----QLTDLEISAAE 222 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDY 320 + Y+ +TQ + +I+ L + A +++L++L S++ SL +D Sbjct: 223 KLLQYVHRTQKRELSHLQKVVHYEIKDYLQMSYATKNSLDLLENARTSKKHGSLYWLLDE 282 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G R+ I PL +I R D I F+ N + + LK D+ R SR Sbjct: 283 TKTAMGTRMLRTWIDRPLVSMNRIKERQDIIQVFLDYFFERNDLTESLKGVYDIERLASR 342 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + G+ PKD+ + + S I + + L++ EL V K+ +P+ LE +++ ++ Sbjct: 343 VSFGKANPKDLLQLGQTL-SQIPRIKMILQSFNQPELDIVVNKIDTMPE-LESLINTAIA 400 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 + +G ++ G D LD R++ + IA ++ K + I LKI +N G Sbjct: 401 PEAQATITEGNIIKSGFDKQLDNYRTVMREGTGWIADIEAKERAASGIGTLKIDYNKKDG 460 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+ VT+S+ S++ + F + T+ N R+ T EL +E + A + +E + Sbjct: 461 YYFHVTNSNLSLVP------EHFFRKATLKNSERYGTAELAKIEGEVLEAREQSSNLEYD 514 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F + + + L ++ IA +D+ +LA++A+ +Y RP ++ +K+GRH Sbjct: 515 IFMRVRAQVESYIKRLQELAKTIATVDVLQSLAVVAENHHYVRPKFNDEHQIKIKNGRHA 574 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 VEK + Q +I N D + L+TGPNM GKST++RQ AL VIMAQMG Sbjct: 575 TVEKVMGVQE---YIPNSIYFDSQTD-----IQLITGPNMSGKSTYMRQLALTVIMAQMG 626 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 +V A + + D +F+R+G+AD+L SG+STFMVEM+E + +A+++S ++ DE+GR Sbjct: 627 GFVSADEVDLPVFDAIFTRIGAADDLISGQSTFMVEMMEANQAVKRASDKSLILFDELGR 686 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A + IEY+H+ R + + ATH+HELTDLS+ L R N + + + + Sbjct: 687 GTATYDGMALAQSIIEYIHDRVRAKTMFATHYHELTDLSEQLTRLVNVHVATLERDGEVT 746 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP----- 855 FLHK+ G AD SYGI V K+AGLP ++ RA DIL E + + + P Sbjct: 747 FLHKIESGPADKSYGIHVAKIAGLPIDLLDRATDILSQLEA----DAVQLIVSAPQEAVT 802 Query: 856 -----EIQTKESKNNLS-----KNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E+ +++ + LS N +E+++ +++ ++P+ A+ ++ +K Sbjct: 803 ADLNEELDSEKQQGQLSLFEEPSNAGRVIEELEAIDIMNLTPMQAMNAIFDLK 855 >gi|160902468|ref|YP_001568049.1| DNA mismatch repair protein [Petrotoga mobilis SJ95] gi|189083169|sp|A9BJY3|MUTS_PETMO RecName: Full=DNA mismatch repair protein mutS gi|160360112|gb|ABX31726.1| DNA mismatch repair protein MutS [Petrotoga mobilis SJ95] Length = 817 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 274/823 (33%), Positives = 461/823 (56%), Gaps = 56/823 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY++IK DS++ +R+GDFYE FF+DA S L I LTKR + PM G Sbjct: 5 TPMIKQYLKIKEEYKDSILLFRLGDFYETFFEDAKKVSEILQIVLTKRNGN-----PMAG 59 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H N+Y+++L+ G+++AICEQ+E P + +K +V R V R++TPGT+ ++ +L Sbjct: 60 IPYHALNNYLKRLLDAGYKVAICEQMEDP-----QSSKGIVDRKVTRILTPGTIIDEGML 114 Query: 146 SPTDSNYLMA-VARIRTEWAIAWIDISTGIFKISTSN--HDRLISDIMRIDPREIIFSEK 202 +SN A + + + IA D STG F + + + D L+ I +I+ S K Sbjct: 115 E--ESNRFAALITKNGNLYKIAIFDFSTGDFYLDSFDFKEDELLDFISSFGLVQILLS-K 171 Query: 203 ELSHAEYKSLFETLGNVAVAQ-------PNVFFDHSISESRIADYYNITTVDTFGSFSQV 255 EL K + L N + N F DH + + Y + ++D + Sbjct: 172 ELEQLSKK--IKNLTNEIYVEILDEWYFSNNFKDH------LKETYEVLSLDHL-DYDDD 222 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 E A A + Y++ TQ + P+R ++ +F+DS NL IL T + ++ ++L Sbjct: 223 ELKVADAVLKYLEVTQFSKIKHMRLPKRFKTKNYMFLDSNTIENLGILPT-NSNKGKTLY 281 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 + + T G R E I +PLTD I RL+ + +++P+L+ +++ L S D+ Sbjct: 282 DILKLTKTSMGNRKLREFILTPLTDKENIEERLNKVEHLVEDPLLLEELKEYLASVKDLE 341 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R SR+ + + PKD+ ++D + I+ N + V+ LK+ + +E T+ Sbjct: 342 RISSRISLMKATPKDLIALKDSLEVVPYIIESLTSNPGLSDFFDGVDVLKEAKEFIENTI 401 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 ++ +G +++G LDE R+L + ++ ++ + E+TKI +LK+ Sbjct: 402 I----EEPAIAPGNGKVIKEGVSGELDEYRNLFNNLDGVLKDIEKREKEKTKISSLKVGR 457 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N G++IEV+ + +S + D ++ +QT+ N R+T EL ++E R+ + Sbjct: 458 NKIYGFYIEVSKAQSS------KVPDNYVRKQTLVNTERYTIKELEEVEQRLALSEEKIK 511 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP-IIDNSTNFIV 614 +IE + ++ + + + + ++ S IA +D+ + A +++ NY RP + NS + Sbjct: 512 VIEKDIYDKVLTHLSQYVDKIEKLSNKIAELDVFRSFAEVSRVYNYKRPTFVQNSKEIKI 571 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWL-LTGPNMGGKSTFLRQNALI 673 + RHP+VE+ + + F ND LS K ++ LTGPNM GKSTF+RQ LI Sbjct: 572 INSRHPVVERFVDE-----FTPNDLFLS------EDKFYIILTGPNMSGKSTFIRQIGLI 620 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MAQ+G +VPA A I I D +F+R+G+ D++ SG+STF+VEM+E ++ILN+AT+ S V Sbjct: 621 SVMAQIGCFVPAEKAEIPIYDGIFTRIGARDDIVSGKSTFLVEMLEVSTILNKATDNSLV 680 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 +LDE+GRGT+TLDG+S+AWA EYL + RC + ATH+ ELT +S + ++V Sbjct: 681 LLDEVGRGTSTLDGISVAWAISEYLFQVKRCNTIFATHYTELTYMSHIYEEVAAKRIKVL 740 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 ++ +G+IFLHK+ G +D+SYGI++ +LAG P +I R+ +IL Sbjct: 741 ETMDGVIFLHKIEDGTSDNSYGIEIARLAGFPIEIIERSKEIL 783 >gi|88809945|ref|ZP_01125450.1| DNA mismatch repair protein [Synechococcus sp. WH 7805] gi|88786135|gb|EAR17297.1| DNA mismatch repair protein [Synechococcus sp. WH 7805] Length = 908 Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust. Identities = 283/847 (33%), Positives = 455/847 (53%), Gaps = 46/847 (5%) Query: 8 PQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLG 67 P + Q+DL + TPM+R Y+E+K +P+ ++ YR+GDF+E FF+DA+ SR L Sbjct: 85 PAWAHHNQVDLAQ----LTPMLRHYVELKIEHPERVLLYRLGDFFECFFEDAVELSRVLE 140 Query: 68 ITLTKR--GKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSL 125 +TLT + GK +G+ +PM G+P H A Y LI+ G+ +A+C+Q+E+ +G +L Sbjct: 141 LTLTGKEGGKAIGR-VPMAGIPHHAAERYCADLIRRGYSVALCDQLET---TPSKG--AL 194 Query: 126 VRRNVVRLVTPGTLTEDQLLSPTDSNYLMAV------ARIRTEWAIAWIDISTG-IFKIS 178 ++R + R++TPGT+ E+ +LS +N+L AV ++ W +A D+STG + + Sbjct: 195 LKRGITRVLTPGTVLEEGMLSARRNNWLAAVVVEPSTSKKPFRWGLASADVSTGDVLVLE 254 Query: 179 TSNHDRLISDIMRIDPREIIFS-EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRI 237 S D L + +++ E++++ E + A + L +A+ F +E + Sbjct: 255 RSGSDALHQQLAQLEASELLWAAEDDTEPARPAWCPDRLRLSPMAR--TPFSAPEAEQTL 312 Query: 238 ADYYNITTVDTFGSFS-QVEKTAAAAAISYIKKTQMVN---KPTIGYPEREDIQSTLFID 293 +Y +T++D G + A + Y+ TQ + + + P TL +D Sbjct: 313 KAHYKLTSLDGLGLPELPLALRAFGGLLQYVNDTQPLEDNARVPLDVPRIVHSGETLVLD 372 Query: 294 SAARSNLEILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSIN 352 + R NLE+ T G + SLL ID ++T GGR + +PL D T I R ++ Sbjct: 373 AQTRRNLELTATQRDGQLQGSLLWAIDQTLTAMGGRCLRRWLEAPLMDLTAIQQRQAVVS 432 Query: 353 FFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKND 412 + L ++++L+ D+ R R G +D+ I DG+ + L L++ Sbjct: 433 LLVDQRSLRQVLRRLLRPMGDLERLAGRAGAGHAGARDLVAIADGLER-LPQLTARLQSK 491 Query: 413 L---PEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRD 469 L PEEL A+ + + L + L P +GG + DG D LD R+ D Sbjct: 492 LTHWPEELT-ALHQPEPALVELAADIRQTLIAAPPLSLSEGGLIHDGVDPLLDGLRNQLD 550 Query: 470 QSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTM 529 +A + E + NL+++++ GYF+ V+ + AS + + +I RQT+ Sbjct: 551 DQNAWLAEQERLERERSGNNNLRLQYHRTFGYFLAVSKAKASSVP------NHWIRRQTL 604 Query: 530 SNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDIS 589 +N RF T EL + E RI A E E F L + + + A++ IA +D Sbjct: 605 ANEERFITPELKEREGRIFQLRARACQREYEFFCGLREQVGAMAAPIRQAARAIASLDAL 664 Query: 590 IALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNS 649 +LA A +C P++ ++ ++ GRHP+VE+ L + + F ND L N Sbjct: 665 TSLAESAATGGWCAPVLSDNRQLEIRAGRHPVVEQLLVESA---FTPNDLALG-----NG 716 Query: 650 GKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASG 709 L +LTGPN GKS +LRQ +I ++AQ+GS+VPA+ A IG+ D++F+RVG+ D+LA+G Sbjct: 717 TDLIVLTGPNASGKSCYLRQIGVIQLLAQIGSWVPAASAAIGLTDRIFTRVGAVDDLAAG 776 Query: 710 RSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLA 769 +STFMVEM ETA+IL+ A+ +S V+LDEIGRGTAT DGLSIAWA E+L + R + A Sbjct: 777 QSTFMVEMAETANILHHASERSLVLLDEIGRGTATFDGLSIAWAVSEHLAGDLKARTVFA 836 Query: 770 THFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVI 829 TH+HEL +L+ N + V ++ ++FLH+V G A SYGI+ +LAG+P V+ Sbjct: 837 THYHELNNLAAERSNVANFQVMVQETGADLVFLHQVQAGGASRSYGIEAARLAGVPAPVV 896 Query: 830 SRAYDIL 836 RA +L Sbjct: 897 QRARQVL 903 >gi|167011071|ref|ZP_02276002.1| DNA mismatch repair protein MutS [Francisella tularensis subsp. holarctica FSC200] Length = 835 Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust. Identities = 294/889 (33%), Positives = 472/889 (53%), Gaps = 74/889 (8%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 M++QY++IKS D L+FYRMGDFYELFFDDA A+ L ITLT RGK G+ IPM GVP Sbjct: 1 MIQQYLKIKSQYQDILLFYRMGDFYELFFDDAKKAAELLDITLTARGKSNGESIPMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A YI K++K G IAICEQ P +K V R V R++TP T++E+ L Sbjct: 61 YHAAEAYIAKIVKKGLSIAICEQTGDP-----NTSKGPVERQVTRIITPATVSEEAFLDN 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTG-IFKIST-SNHDRLISDIMRIDPREIIFSEKELS 205 + L+++ ++ +A+ + G I+ + T ++ + L + ++++ P+EII + +EL+ Sbjct: 116 NQDSILVSIFEKNNKYYLAYTSYTQGKIYLVKTLTSLNELKNTVLKLSPQEIITNSRELA 175 Query: 206 HAE------------YKSLFETLGNVAVAQPNVFFDHSISESRIADYYN--ITTVDTFGS 251 Y S FE A N D +I+ + + Y N +TT+ + S Sbjct: 176 QQNPFKKPIKALEEWYYSNFE-----AKKYINDSLDTNIANNILNLYKNDQLTTIGSILS 230 Query: 252 FSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 + ++ I K + I Y + +D TL ID +R NLE L + + Sbjct: 231 Y-----------LTNILKDTPRHITDISYEQEQD---TLNIDINSRINLE----LDNNSK 272 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 SLL I T G RL ++P + + TR IN +N + IQ +L Sbjct: 273 SSLLSIIGKCKTSLGSRLLKRYFSNPTRNLNILATRHSIINSLGENQHFLK-IQDVLSYI 331 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEKLKKLPQ 429 D+ R +SR+ +G +PKD+ +R + + L + + PE + + +L +L Sbjct: 332 SDIERIISRVALGTVKPKDLVALRYSLEQLPILKKLLSEKNTPEITNINNRIHQLDELVT 391 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 L+K + ++ PT RDGG +++G D LDE +S++D S + + ++ I Sbjct: 392 LLDKAII----ENPPTTIRDGGVIKEGFDKELDELKSIKDNSYDFLIKFEELQKQKIGIS 447 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LK+ +N GY+IE++ A + + ++ RQT+ R+ T EL + E+++ + Sbjct: 448 TLKVGYNRVHGYYIELSKQHADKIPTE------YVRRQTLKASERYITEELKNFEDKVLS 501 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 + AL E ++ L +IE + + + IA ID+ A A + +P +N Sbjct: 502 SKEKALAREKLIYDTLLKKVIEYYKQIQETAASIAEIDVLANFAERAIKLKLSQPKFNNL 561 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 +K+ RH +E + + PFI ND LS K++ L ++TGPNMGGKST++RQ Sbjct: 562 AKLELKEVRHLAIEHNIDE----PFIPNDTLLS----KDTNTLQIITGPNMGGKSTYMRQ 613 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 A ++ +A +GS+VPASYA I +D +++R+G++D+++SGRSTFMVEM ETA ILN A+ Sbjct: 614 VAQLIFLAYIGSFVPASYADICDIDTIYTRIGASDDISSGRSTFMVEMTETAYILNNASA 673 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 +S VI+DEIGRGT+T DGL++A A E + L ATH+ ELT+L+K N Sbjct: 674 KSLVIMDEIGRGTSTFDGLALAKACAEKFAQMG-AFTLFATHYFELTELAKQYPNVCNIH 732 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 + + + I F+HK + G A SYGIQV KLAG+ V+ A + LY+ +K Sbjct: 733 FEAKEYKDNIYFMHKAVTGAAKKSYGIQVAKLAGISQDVLESAK------QNLYNLEKKQ 786 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++Q + ++N +K+ ++++ ++PL AL L+ +K Sbjct: 787 QLTESTQVQAQFQLEPTTQNP--LQQKLDAIDINTITPLEALNILFELK 833 >gi|332528688|ref|ZP_08404665.1| DNA mismatch repair protein MutS [Hylemonella gracilis ATCC 19624] gi|332041754|gb|EGI78103.1| DNA mismatch repair protein MutS [Hylemonella gracilis ATCC 19624] Length = 877 Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust. Identities = 291/915 (31%), Positives = 472/915 (51%), Gaps = 87/915 (9%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY+ +K+ P +L+FYRMGDFYELF++DA A+R L ITLT+RG+ G+ + M GVP Sbjct: 1 MMQQYLSLKAGYPGTLLFYRMGDFYELFYEDAEKAARLLDITLTQRGQSAGQPVVMAGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H+ Y+ +LIK+G +AICEQ+ AK V R VVR+VTPGTLT+ LLS Sbjct: 61 FHSVETYLARLIKLGESVAICEQVGDVATAK-----GPVERKVVRVVTPGTLTDSALLSE 115 Query: 148 TDSNYLMAVAR-IRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS------ 200 + L+A+ + R +AW+ ++ G ++ + D + ++RI P E+I+S Sbjct: 116 KSESLLLALHQGPRNSVGLAWLSVTQGEVHLAECDADDVAEWLLRIAPGELIYSAGVSPA 175 Query: 201 -EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS-------- 251 E+ L + SL L +P FD ++ R+ ++ + + Sbjct: 176 FEQRLQALQQGSLSAPLS----IRPEWQFDATLGRERLQTLLQTASLQAWSAQDCPLAHA 231 Query: 252 ----FSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS 307 + A+S++ ++ +R+D Q + + R NLE+++TL Sbjct: 232 AAAALLAYAEHTQGRALSHVHGLRV---------QRQDEQ--IDLPQTTRRNLELVQTLR 280 Query: 308 GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP----ILINP 363 G +L +D +TG G RL + P D R+ +I P Sbjct: 281 GEDSPTLFSLLDTCMTGMGSRLLKRWLLEPPRDRAVATARIAAITLLRAGAPGGSAHGGP 340 Query: 364 IQKI---LKSSPDVPRSLSRLKIGRGEPKDI-AVIRDGIRSGINILNLFLKNDL--PE-- 415 Q++ +K S DV R ++R+ + + P+++ + + +R+ L+ L + L PE Sbjct: 341 WQRLREQIKGSSDVERIVARIALRQVRPRELTGLAQTLVRTAT--LSPLLADSLRVPEAR 398 Query: 416 -ELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRI 474 +L + + + P L+ L + RDGG + DG DA LDE R+++ S Sbjct: 399 ADLLAELARDLQPPPGCGDLLTRALLAEPAALVRDGGVINDGFDAELDELRAIQTHSDGF 458 Query: 475 IASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTR 534 + ++ + T I NL++++N G++IEVTSS+ + +D + RQT+ N R Sbjct: 459 LLDMEARERARTGIGNLRVQYNKVHGFYIEVTSSNLDKVPED------YRRRQTLKNAER 512 Query: 535 FTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAI 594 + T EL E++ +A AL E +E L + + +L ++ +A +D ALA Sbjct: 513 YITPELKTFEDKALSAQERALAREKWLYEQLLEQLDDFLPTLTRHARALAALDALCALAE 572 Query: 595 LAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWL 654 + + P+ ++ GRHP+VE L + S FIAND L P + + + Sbjct: 573 RSLTLGWNAPVFVAEPCIAIEAGRHPVVEARLAENSGGSFIANDTQLG-PRQR----MQI 627 Query: 655 LTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFM 714 +TGPNMGGKST++RQ ALIV++A MGSYVPA+ +G +D + +R+G+AD+LA+ +STFM Sbjct: 628 ITGPNMGGKSTYMRQVALIVLLASMGSYVPAASCRLGPIDAIHTRIGAADDLANAQSTFM 687 Query: 715 VEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHE 774 +EM E A IL+ AT S V++DEIGRGT+T DGL++A A LH+ + L ATH+ E Sbjct: 688 LEMTEAAQILHAATPHSLVLMDEIGRGTSTFDGLALAGAIASQLHDKTQAFTLFATHYFE 747 Query: 775 LTDLSKSLKRFHNATLQVSDS-------NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNT 827 LT+ + N + +++ GI+FLH++ G A SYGIQV +LAG+P Sbjct: 748 LTEFPSQHRAAVNVHVSAAETTGPSGKGGHGIVFLHEIQSGPASRSYGIQVARLAGMPAA 807 Query: 828 VISRAYDILKTFEKLYHHNQKDMRLYY----PEIQTKESKNNLSKNDKLFVEKIKCLNLD 883 V+ A L+ E+ ++ + L+ PE+ + ++ ++ D Sbjct: 808 VLRHAQHALEALEQSASQSRAQVDLFAAPPEPELAVPSAVEA----------RLAEIDPD 857 Query: 884 EMSPLTALKTLYAVK 898 +SP AL LYA+K Sbjct: 858 TLSPRDALDALYALK 872 >gi|22538235|ref|NP_689086.1| DNA mismatch repair protein MutS [Streptococcus agalactiae 2603V/R] gi|25012092|ref|NP_736487.1| DNA mismatch repair protein MutS [Streptococcus agalactiae NEM316] gi|76798537|ref|ZP_00780770.1| DNA mismatch repair protein MutS [Streptococcus agalactiae 18RS21] gi|77414039|ref|ZP_00790210.1| DNA mismatch repair protein MutS [Streptococcus agalactiae 515] gi|44888212|sp|Q8DWW1|MUTS_STRA5 RecName: Full=DNA mismatch repair protein mutS gi|44888214|sp|Q8E2R3|MUTS_STRA3 RecName: Full=DNA mismatch repair protein mutS gi|22535147|gb|AAN00959.1|AE014286_22 DNA mismatch repair protein HexA [Streptococcus agalactiae 2603V/R] gi|24413636|emb|CAD47713.1| DNA mismatch repair protein MutS [Streptococcus agalactiae NEM316] gi|76586101|gb|EAO62626.1| DNA mismatch repair protein MutS [Streptococcus agalactiae 18RS21] gi|77159921|gb|EAO71061.1| DNA mismatch repair protein MutS [Streptococcus agalactiae 515] Length = 858 Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust. Identities = 282/889 (31%), Positives = 487/889 (54%), Gaps = 56/889 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK PD+ + +RMGDFYELF+DDA+ A++ L I+LT R K+ K IPM G Sbjct: 7 SPGMQQYLDIKENYPDAFLLFRMGDFYELFYDDAVKAAQILEISLTSRNKNAEKPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI L+++G+++AI EQ+E P +A +V+R VV++VTPGT+ E Sbjct: 67 VPYHSAQQYIDVLVELGYKVAIAEQMEDPKKAV-----GVVKREVVQVVTPGTVVES--- 118 Query: 146 SPTDS--NYLMAV-ARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSE 201 + DS N+L+A+ ++ + + +A++D+STG F+ + ++ + + S+I+ + REI+ Sbjct: 119 TKPDSANNFLVAIDSQDQQTFGLAYMDVSTGEFQATLLTDFESVRSEILNLKAREIVVGY 178 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 + L + ++ Q N+ S + R+ D + I + +E +AA Sbjct: 179 Q---------LTDEKNHLLTKQMNLLL--SYEDERLNDIHLIDE-----QLTDLEISAAE 222 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDY 320 + Y+ +TQ + +I+ L + A +++L++L S++ SL +D Sbjct: 223 KLLQYVHRTQKRELSHLQKVVHYEIKDYLQMSYATKNSLDLLENARTSKKHGSLYWLLDE 282 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G R+ I PL +I R D I F+ N + + LK D+ R SR Sbjct: 283 TKTAMGTRMLRTWIDRPLVSMNRIKERQDIIQVFLDYFFERNDLTESLKGVYDIERLASR 342 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + G+ PKD+ + + S I + + L++ EL V K+ +P+ LE +++ ++ Sbjct: 343 VSFGKANPKDLLQLGQTL-SQIPRIKMILQSFNQPELDIIVNKIDTMPE-LESLINTAIA 400 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 + +G ++ G D LD R++ + IA ++ K + I LKI +N G Sbjct: 401 PEAQATITEGNIIKSGFDKQLDNYRTVMREGTGWIADIEAKERAASGIGTLKIDYNKKDG 460 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+ VT+S+ S++ + F + T+ N R+ T EL +E + A + +E + Sbjct: 461 YYFHVTNSNLSLVP------EHFFRKATLKNSERYGTAELAKIEGEMLEAREQSSNLEYD 514 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F + + + L ++ IA +D+ +LA++A+ +Y RP ++ +K+GRH Sbjct: 515 IFMRVRAQVESYIKRLQELAKTIATVDVLQSLAVVAENYHYVRPKFNDQHQIKIKNGRHA 574 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 VEK + Q +I N D + L+TGPNM GKST++RQ AL VIMAQMG Sbjct: 575 TVEKVMGVQE---YIPNSIYFDSQTD-----IQLITGPNMSGKSTYMRQLALTVIMAQMG 626 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 +V A + + D +F+R+G+AD+L SG+STFMVEM+E + +A+++S ++ DE+GR Sbjct: 627 GFVSADEVDLPVFDAIFTRIGAADDLISGQSTFMVEMMEANQAVKRASDKSLILFDELGR 686 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A + IEY+H+ R + + ATH+HELTDLS+ L R N + + + + Sbjct: 687 GTATYDGMALAQSIIEYIHDRVRAKTMFATHYHELTDLSEQLTRLVNVHVATLERDGEVT 746 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK-----LYHHNQKDMRL-YY 854 FLHK+ G AD SYGI V K+AGLP ++ RA DIL E + +Q+ + Sbjct: 747 FLHKIESGPADKSYGIHVAKIAGLPIDLLDRATDILSQLEADAVQLIVSPSQEAVTADLN 806 Query: 855 PEIQTKESKNNLS-----KNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E+ +++ + LS N +E+++ +++ ++P+ A+ ++ +K Sbjct: 807 EELDSEKQQGQLSLFEEPSNAGRVIEELEAIDIMNLTPMQAMNAIFDLK 855 >gi|332523560|ref|ZP_08399812.1| DNA mismatch repair protein MutS [Streptococcus porcinus str. Jelinkova 176] gi|332314824|gb|EGJ27809.1| DNA mismatch repair protein MutS [Streptococcus porcinus str. Jelinkova 176] Length = 849 Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust. Identities = 273/817 (33%), Positives = 447/817 (54%), Gaps = 40/817 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P M+QY++IK+ PD+ + +RMGDFYELF++DA+ A+R L I LT R K+ IPM G Sbjct: 7 SPGMQQYLDIKANYPDAFLLFRMGDFYELFYEDAVKAARLLEIGLTSRNKNAENPIPMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A YI LI++G+++AI EQ+E P +A +V+R VV+++TPGT+ D Sbjct: 67 VPHHSAQQYIDVLIEMGYKVAIAEQMEDPKKAV-----GVVKREVVQVITPGTVV-DSAK 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 T +N+L+A+ + ++++D++TG F S ++ L S+I+ + +E+I EL Sbjct: 121 PSTANNFLVAIDYDGQTYGLSYMDLATGEFFVTSLADFTSLNSEILNLKTKEVILG-FEL 179 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 + + K L + N+ +S +ES Y + T ++ + +E A + Sbjct: 180 NDDQEKQLKQ--------DSNLLLSYS-NES----YEDSTLLNP--QLAPIELRVAGKLL 224 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSIT 323 +Y+ +TQM + +I+ L + +++L++L +G + SL +D + T Sbjct: 225 AYVNQTQMRELSHLQKVSHYEIKDYLQMTYTTKASLDLLENARTGKKHGSLYWLLDETKT 284 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL I PL I R I F+ N I + LK D+ R SR+ Sbjct: 285 AMGMRLLRTWIDRPLIHQAAIEKRQRIIQTFLDNFIERADLSDSLKGVYDIERLSSRVSF 344 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 G+ PKD+ + + + + + L++ +L V+++ +P+ LE + S + D Sbjct: 345 GKVNPKDLLQLGQTL-AQVPYIKAVLESMTSADLGDLVDQIDAIPE-LENLIRSAIDPDA 402 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 +G +R G D LD R + + IA ++ K + + I NLKI +N GY+ Sbjct: 403 QATISEGNIIRTGFDERLDHYRKVMKEGTGWIADIEGKERQASGINNLKIDYNKKDGYYF 462 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 VT+S+ ++ D F + T+ N R+ T EL +E ++ A + +E + F Sbjct: 463 HVTNSNLPLVP------DHFFRKATLKNSERYGTAELAKIEGQMLEAREESAQLEYDIFM 516 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 + + L + ++ IA +D+ +LA +A++ +Y P + + DGRH +VE Sbjct: 517 RVRAQVETYIARLQSLAKAIATVDVLQSLAQVAEQNHYVCPRFNQDKEVSIVDGRHAVVE 576 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 K + + +I N L+ D+ S + L+TGPNM GKST++RQ AL +IMAQMGSYV Sbjct: 577 KVM---GVREYIPNSIRLT---DQVS--IQLITGPNMSGKSTYMRQLALTIIMAQMGSYV 628 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 A A++ + D +F+R+G+AD+L SG+STFMVEM+E + +A+ S ++ DE+GRGTA Sbjct: 629 SAEQANLPLFDAIFTRIGAADDLISGQSTFMVEMMEANQAIQRASQDSLILFDELGRGTA 688 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DG+++A + IEY+H + L ATH+HELT LS L+ N + + + FLH Sbjct: 689 TYDGMALAQSIIEYIHNHVGAKTLFATHYHELTTLSSQLQGLQNVHVSTLEKGGEVTFLH 748 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 K+ G AD SYGI V K+AGLP ++SRA IL+ E Sbjct: 749 KISEGPADKSYGIHVAKIAGLPAGLLSRASHILEELE 785 >gi|2497995|sp|Q56215|MUTS_THEAQ RecName: Full=DNA mismatch repair protein mutS gi|1203807|gb|AAC43637.1| MutS [Thermus aquaticus] gi|1588400|prf||2208391A MutS-like protein Length = 811 Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust. Identities = 287/888 (32%), Positives = 461/888 (51%), Gaps = 112/888 (12%) Query: 27 PMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI--PMC 84 P+++QY+E++ PD L+ +++GDFYE F +DA +R LG+ LT + KD PM Sbjct: 15 PLLQQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTS---KDFTTPMA 71 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G+P+ Y ++L+K+G R+A+ +Q+E EA+ LVRR V +L+TPGTL ++ L Sbjct: 72 GIPLRAFEAYAERLLKMGFRLAVADQVEPAEEAE-----GLVRREVTQLLTPGTLLQESL 126 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 L P ++NYL A+A W +A++D+STG FK + + L ++ R P E++ + + Sbjct: 127 L-PREANYLAAIA-TGDGWGLAFLDVSTGEFKGTVLKSKSALYDELFRHRPAEVLLAPEL 184 Query: 204 LSHA----EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 L + E++ F + + A +P G + A Sbjct: 185 LENGAFLDEFRKRFPVMLSEAPFEPE------------------------GEGPLALRRA 220 Query: 260 AAAAISYIKKTQ---MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 A ++Y ++TQ + +P Y D + + + A LE+ L G + +L Sbjct: 221 RGALLAYAQRTQGGALSLQPFRFY----DPGAFMRLPEATLRALEVFEPLRG--QDTLFS 274 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D + T G RL + PL D + RLD + F++ L ++++L D+ R Sbjct: 275 VLDETRTAPGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALREGVRRLLYRLADLER 334 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP--QSLEKT 434 +RL++GR PKD+ +R RS + IL ELR + + LP L++ Sbjct: 335 LATRLELGRASPKDLGALR---RS-LQILP---------ELRALLGEEVGLPDLSPLKEE 381 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L + L +D P +GG +R+G D LD R+ + L+ + E T I LK+ Sbjct: 382 LEAALVEDPPLKVSEGGLIREGYDPDLDALRAAHREGVAYFLELEERERERTGIPTLKVG 441 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY++EVT + K+ + QT+ + R+T E+ + E + Sbjct: 442 YNAVFGYYLEVTRPYYERVPKE------YRPVQTLKDRQRYTLPEMKEKEREVYRLEALI 495 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 E E F + Q+E+L A++++A +D+ ALA +A Y RP + + Sbjct: 496 RRREEEVFLEVRERAKRQAEALREAARILAELDVYAALAEVAVRYGYVRPRFGDRLQ--I 553 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 + GRHP+VE+ + F+ ND +++ +L L+TGPNM GKSTFLRQ ALI Sbjct: 554 RAGRHPVVERRTE------FVPNDLEMAH-------ELVLITGPNMAGKSTFLRQTALIA 600 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++AQ+GS+VPA AH+ + D +++R+G++D+LA G+STFMVEM E A IL +AT S V+ Sbjct: 601 LLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATENSLVL 660 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDE+GRGT++LDG++IA A E LHE R L ATH+ ELT L L R N + + Sbjct: 661 LDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYFELTAL--GLPRLKNLHVAARE 717 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 G++F H+V+PG A SYG++V +AGLP V++RA +L Sbjct: 718 EAGGLVFYHQVLPGPASKSYGVEVAAMAGLPKEVVARARALL------------------ 759 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTL 902 Q ++ + + L E++ L+ D ++PL AL+ L +KA L Sbjct: 760 ---QAMAARREGALDAVL--ERLLALDPDRLTPLEALRLLQELKALAL 802 >gi|323140808|ref|ZP_08075723.1| DNA mismatch repair protein MutS [Phascolarctobacterium sp. YIT 12067] gi|322414690|gb|EFY05494.1| DNA mismatch repair protein MutS [Phascolarctobacterium sp. YIT 12067] Length = 758 Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust. Identities = 273/790 (34%), Positives = 436/790 (55%), Gaps = 54/790 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+ +K + + L+F+R+GDFYE+FFDDA+ ASR L +TLTKR + + +PMCG Sbjct: 7 TPMVQQYMAVKQEHQNELLFFRLGDFYEMFFDDAITASRELNLTLTKRSNGM-EHMPMCG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+ + YI KLIK G+RIAICEQ+E P AK +V R V++++TPGT +QLL Sbjct: 66 VPYHSVDGYIAKLIKKGYRIAICEQVEDPKLAK-----GIVERKVIKIITPGTALNEQLL 120 Query: 146 SPTDSNYLMAVARIRTE-WAIAWIDISTG----IFKISTSNHDRLISDIMRIDPREII-- 198 + YL+ + + + + +A D++TG + + + + R+ P E++ Sbjct: 121 EDKHNRYLVFLQQAQVKGMCLAAADVTTGECEWFLDQTPESFLNITEQLYRLQPAELVVH 180 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 F+ E+S + L L V +D S E ADY+ F S+V Sbjct: 181 FASDEMSEKLQEWLAARLPECVVTH----YDESTPE---ADYF----AQHFAG-SEVPDE 228 Query: 259 AAAAA---ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQSL 314 + + Y+ T M + I R + S + +D A NLE++R ++ GS+ +L Sbjct: 229 VHSTVELLLRYLHGTVMADLSHINRLVRIERNSFMNLDVTAIRNLELVRNMTDGSKRGTL 288 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L+ +D++ T G R I SPL D +I R +++ L I LK+ D+ Sbjct: 289 LQVLDFTNTSMGARRLRSWIESPLLDVGRIYERQEAVAELAAAAELREAIVAQLKAVADL 348 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKK---LPQ 429 R +SR+++G +D+ +R N L++ LK L G + KL K L + Sbjct: 349 ERIVSRIEVGSANARDLVALR-------NSLSVLPGLKGILEGCSSGLLRKLWKGLHLHE 401 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 L L + D+ P R+GG +R G + LDE + +K + + + K EET IK Sbjct: 402 ELAARLQQAIVDEPPFSVREGGMIRTGYNQELDELHLIAADNKTWMQNFEQKIKEETGIK 461 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 +K+ N GY+IEV+ +S + F+ +QT+ N R+ EL + EN+I Sbjct: 462 TMKVGFNKVFGYYIEVSKGQSSSVPP------YFVRKQTLVNAERYIVPELKEFENKILG 515 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 A +E F+ L I + + + ++ ++ ID+ LA A + NY RP ++N+ Sbjct: 516 AKEKIEQLEYYLFDELRTLIRGKIKEIQETARAVSYIDVLTGLAEAAYKYNYVRPELNNN 575 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 + DGRHP+VE+ L+++ F+ N+ +L+ +++ + ++TGPNM GKST++RQ Sbjct: 576 GEIKIVDGRHPVVERLLEKEI---FVPNNTNLNNTDER----MIIITGPNMAGKSTYMRQ 628 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 AL+V+M Q+GS++PA A + VDK+F+RVG++D+LA+G+STFMVEM E A IL AT Sbjct: 629 VALLVLMTQIGSFIPARQASVCPVDKIFTRVGASDDLATGQSTFMVEMNEVAQILKYATK 688 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 S +ILDE+GRGT+T DG+SIA A +EY+H+ + + L ATH+H+L L L N + Sbjct: 689 NSLIILDEVGRGTSTFDGMSIAHAVMEYIHDRIKAKTLFATHYHQLIALENVLSGVKNYS 748 Query: 790 LQVSDSNEGI 799 + V + + I Sbjct: 749 VAVKERGKDI 758 >gi|218296478|ref|ZP_03497206.1| DNA mismatch repair protein MutS [Thermus aquaticus Y51MC23] gi|218243020|gb|EED09552.1| DNA mismatch repair protein MutS [Thermus aquaticus Y51MC23] Length = 811 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 287/888 (32%), Positives = 461/888 (51%), Gaps = 112/888 (12%) Query: 27 PMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI--PMC 84 P+++QY+E++ PD L+ +++GDFYE F +DA +R LG+ LT + KD PM Sbjct: 15 PLLQQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTS---KDFTTPMA 71 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G+P+ Y ++L+K+G R+A+ +Q+E EA+ LVRR V +L+TPGTL ++ L Sbjct: 72 GIPLRAFEAYAERLLKMGFRLAVADQVEPAEEAE-----GLVRREVTQLLTPGTLLQESL 126 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 L P ++NYL A+A W +A++D+STG FK + + L ++ R P E++ + + Sbjct: 127 L-PREANYLAAIA-TGDGWGLAFLDVSTGEFKGTVLKSKSALYDELFRHRPAEVLLAPEL 184 Query: 204 LSHA----EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 L + E++ F + + A +P G + A Sbjct: 185 LENGAFLDEFRKRFPVMLSEAPFEPE------------------------GEGPLALRRA 220 Query: 260 AAAAISYIKKTQ---MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 A ++Y ++TQ + +P Y D + + + A LE+ L G + +L Sbjct: 221 RGALLAYAQRTQGGALSLQPFRFY----DPGAFMRLPEATLRALEVFEPLRG--QDTLFS 274 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D + T G RL + PL D + RLD + F++ L ++++L D+ R Sbjct: 275 VLDETRTAPGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALREGVRRLLYRLADLER 334 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP--QSLEKT 434 +RL++GR PKD+ +R RS + IL ELR + + LP L++ Sbjct: 335 LATRLELGRASPKDLGALR---RS-LQILP---------ELRALLGEEVGLPDLSPLKEE 381 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L + L +D P +GG +R+G D LD R+ + L+ + E T I LK+ Sbjct: 382 LEAALVEDPPLKVSEGGLIREGYDPDLDALRAAHREGVAYFLELEERERERTGIPTLKVG 441 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY++EVT + K+ + QT+ + R+T E+ + E + Sbjct: 442 YNAVFGYYLEVTRPYYERVPKE------YRPVQTLKDRQRYTLPEMKEKEREVYRLEALI 495 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 E E F + Q+E+L A++++A +D+ ALA +A Y RP + + Sbjct: 496 RRREEEVFLEVRERAKRQAEALREAARILAELDVYAALAEVAVRYGYVRPRFGDRLQ--I 553 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 + GRHP+VE+ + F+ ND +++ +L L+TGPNM GKSTFLRQ ALI Sbjct: 554 RAGRHPVVERRTE------FVPNDLEMAH-------ELVLVTGPNMAGKSTFLRQTALIA 600 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++AQ+GS+VPA AH+ + D +++R+G++D+LA G+STFMVEM E A IL +AT S V+ Sbjct: 601 LLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATENSLVL 660 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDE+GRGT++LDG++IA A E LHE R L ATH+ ELT L L R N + + Sbjct: 661 LDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYFELTAL--GLPRLKNLHVAARE 717 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 G++F H+V+PG A SYG++V +AGLP V++RA +L Sbjct: 718 EAGGLVFYHQVLPGPASKSYGVEVAAMAGLPKEVVARARALL------------------ 759 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTL 902 Q ++ + + L E++ L+ D ++PL AL+ L +KA L Sbjct: 760 ---QAMAARREGALDAVL--ERLLALDPDRLTPLEALRLLQELKALAL 802 >gi|93005104|ref|YP_579541.1| DNA mismatch repair protein [Psychrobacter cryohalolentis K5] gi|122416020|sp|Q1QE46|MUTS_PSYCK RecName: Full=DNA mismatch repair protein mutS gi|92392782|gb|ABE74057.1| DNA mismatch repair protein MutS [Psychrobacter cryohalolentis K5] Length = 1040 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 300/919 (32%), Positives = 476/919 (51%), Gaps = 119/919 (12%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK-HLGK 79 +L TPMM QY+ +K P +L+ YRMGDFYELFF+DA A++ L ITLT+RG G Sbjct: 35 HLADHTPMMVQYLNMKVNYPQALLLYRMGDFYELFFEDAKRAAQILDITLTRRGTDKAGN 94 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIE----------SPLEAKKRGNK------ 123 I M GVP H A+ Y+ +LI G + +CEQI+ +P A G+K Sbjct: 95 TIAMAGVPFHAADSYMARLIAAGQTVVVCEQIDESATGTDNANNPSNAPTMGDKQKKDKS 154 Query: 124 -----SLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAV--------ARIRTEWAIAWIDI 170 +++RR VV+ +T GT+T+D L++P + ++A+ ++ + A++ +D+ Sbjct: 155 KSTAGTIMRREVVKTLTAGTITDDALIAPNHTPTVVAIDIETPKSNSKQPVQAAVSQMDL 214 Query: 171 STGIFKIST--SNHD-------RLISDIMRIDPREIIFSEK------ELSHAEYKSLFET 215 + G T +N D ++++ + R P E I SE ++S L + Sbjct: 215 AAGTLTTQTISANQDDIESLQTQMLTVLARFAPSECIISEALSDSNGDISEEWLLWLRQH 274 Query: 216 LGN--VAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAISYIKKTQM 272 L + VA + +H+ + + + + +D G S + + +++ AA I Y ++TQ Sbjct: 275 LNCPIIEVAANDFHREHA--SATLCQQFEVQRLDGLGISGAPLAQSSCAALIHYARQTQQ 332 Query: 273 VNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAE 332 + P + E L ID+ ++ NLE+ +S S SL+ +++ T G RL + Sbjct: 333 RHVPQLNQLIVEYNDDYLIIDANSQQNLELFTPVS-SNGTSLISVLNHCQTPMGRRLLVQ 391 Query: 333 RIASPLTDSTKINTRLDSINFFIQ----------NPILINPIQKILKSSPDVPRSLSRLK 382 ++ PL ++IN RLD+I + N L+ +++ L + D+ R SR+ Sbjct: 392 QMKRPLRQHSRINLRLDAITSLLDTDKQSEQCSGNISLVTSLRETLNAIGDIERISSRIG 451 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKL-KKLP------QSLEKTL 435 + +P+D+ + DGI S + L + E G + L ++LP QS+ + + Sbjct: 452 LMSAKPRDLRKLADGIASSAQLTTLLTNAGISHEQAGLLPMLMQQLPAQLPAVQSVAELI 511 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + + P RDGG L G DA D L D + + + + +E+++ +LK+ Sbjct: 512 ERAIIVEPPAHIRDGGMLAAGYDAEFDRLTHLHDNIQVTLDEMVERARQESQLPSLKVGF 571 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N G++ E+ A + FI RQT+ + RF T EL +E +A + AL Sbjct: 572 NKVSGFYFELPKMQAK------NAPAHFIRRQTLKSSERFITNELKTVETEYLSAQSLAL 625 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP----------I 605 E + + L + L S IA ID+ A LA N+ RP I Sbjct: 626 TREKQLYNELLIRLGSHLAELQQLSAAIAQIDVLNNWAQLAITYNWQRPVMSNESKKSSI 685 Query: 606 IDNS---------------TNFIVKDGRHPIVEKTLK---------QQSSKPFIANDCDL 641 +DNS T+ +K+GRH +VE L + S F+ANDC L Sbjct: 686 LDNSLENSHSENGLNNNSQTSINIKEGRHVVVEAVLNPIHTHQNNPAKHSSHFVANDCVL 745 Query: 642 SCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVG 701 + +N +L ++TGPNMGGKST++RQ ALIV++A GS+VPA+ AHIG +D++F+R+G Sbjct: 746 G--SYENPERLLMITGPNMGGKSTYMRQTALIVLLAHCGSFVPAARAHIGDIDRIFTRIG 803 Query: 702 SADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHET 761 SAD+LA G+STFMVEMIETA+ILNQATN+S V++DE+GRGTAT DGL+IA A + L E Sbjct: 804 SADDLAGGKSTFMVEMIETANILNQATNKSLVLMDEVGRGTATTDGLAIAHACVNRLVEI 863 Query: 762 NRCRGLLATHFHELTDLSKSLKR--------FHNATLQVSDSNEGIIFLHKVIPGIADHS 813 C L ATH+ ELT L+++ K N + S+ + ++ LH++ G A S Sbjct: 864 G-CLTLFATHYFELTKLAQNPKESSGSNDKFIRNVHVAASEIDGQLLLLHQIKDGAASSS 922 Query: 814 YGIQVGKLAGLPNTVISRA 832 +G+ V K+AG+P V++ A Sbjct: 923 FGLHVAKMAGIPIQVLNDA 941 >gi|108803143|ref|YP_643080.1| DNA mismatch repair protein MutS [Rubrobacter xylanophilus DSM 9941] gi|108764386|gb|ABG03268.1| DNA mismatch repair protein MutS [Rubrobacter xylanophilus DSM 9941] Length = 784 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 273/817 (33%), Positives = 431/817 (52%), Gaps = 46/817 (5%) Query: 28 MMRQYIEIKS-INPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGV 86 M+ +Y E+K+ + P +++FY++G F+E F +DA SR L + LT R +P+ GV Sbjct: 1 MLGRYAELKAQLPPGTILFYQVGTFFETFEEDAKTVSRELSLRLTSREAAGEGRVPLAGV 60 Query: 87 PVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLS 146 P H ++ L++ GH +AI EQ + P + ++ R + +++TPGT+ ED +LS Sbjct: 61 PGHALQEHVAALLRKGHSVAIAEQRQHPTKPRQ------FTREITQILTPGTVIEDNVLS 114 Query: 147 PTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSH 206 SNYL + IA + STG F + L +++ R PRE++ E+ + Sbjct: 115 AGRSNYLATFVVRDGKAGIAVAEASTGEFSGTVVPEAELPAELERWSPREVVVPER--TA 172 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA-IS 265 AE E + A P F+ S E + ++ + ++ +G + AAA A I Sbjct: 173 AEDLPRLEARVSTA---PRWTFEPSAGEQALRQHFGVASLKGYGLDGSPQLVAAAGALIR 229 Query: 266 YIKKTQMVNKP-TIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324 Y+ + + P I R D + +D+A R NL + + L+ T+D + T Sbjct: 230 YLSTLRGGSPPEQIVSFRRYDPGQAMLLDAATRRNLGL---------EELISTVDRTRTP 280 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 G R + PL ++++IN RL++++ + +L +++ L PD+ R +R+ Sbjct: 281 MGQRTLRRWLERPLLEASRINQRLEAVDALFPDYMLREEVREHLGGIPDIERIATRIVRL 340 Query: 385 RGEPKDIAVIRDGIRS-GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 P D+ +R + + G L E LR A+ +++ P + + ++ +S++ Sbjct: 341 SASPGDLLALRGALEALGPLRRALAPAAQRSELLRRALSAMEE-PPGVRELIAEAISEE- 398 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 +G +R G A LDE RS RD + + + + +T +K LK+ + + GYFI Sbjct: 399 -----EGEIIRPGYSAELDEARSFRDGAHEWLTRFEAEERLKTGLKTLKVGYRDGEGYFI 453 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 EV A + E HR+ + + R+ T+EL + E+R+ A +E Sbjct: 454 EVGGKEAHRVPPHYE------HRKALKHNARYVTVELKEHESRMLTAREEVERLERRILG 507 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 + A+ E + L ++ +A++D+ + A A E YCRP + + GRHP+VE Sbjct: 508 EIRAAVKEAAPQLQRIARAVAVVDVVASFAAAAAELRYCRPRVAEERGIRIVSGRHPVVE 567 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 + PF+ ND + D S +L ++TGPNM GKS +LRQ ALIV++AQ GSYV Sbjct: 568 ----HATETPFVPNDARI----DGGS-RLQIITGPNMAGKSVYLRQVALIVLLAQTGSYV 618 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA A +G+VD++F+RVG+ D LASG STFMVEM E A ILN AT +S VILDE+GRGT+ Sbjct: 619 PAEEASLGVVDRIFTRVGAEDRLASGESTFMVEMTEAAGILNGATERSLVILDEVGRGTS 678 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DG+S+AWA EYLH+ + L ATH+HELT L+ SL N V + I+FLH Sbjct: 679 TYDGMSLAWAIAEYLHDDVQALTLFATHYHELTRLADSLPGCRNLKAVVEEVGGEIVFLH 738 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 ++ PG SYG+ V +LAGLP V RA +IL E Sbjct: 739 RIEPGAESSSYGVHVARLAGLPPRVTDRAQEILSRLE 775 >gi|289547991|ref|YP_003472979.1| DNA mismatch repair protein MutS [Thermocrinis albus DSM 14484] gi|289181608|gb|ADC88852.1| DNA mismatch repair protein MutS [Thermocrinis albus DSM 14484] Length = 848 Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust. Identities = 269/834 (32%), Positives = 456/834 (54%), Gaps = 51/834 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD-IPMC 84 TPM+ QY +K D L+F+R+GDFYELF++DA + S+ LG+ LT R GK+ IPMC Sbjct: 10 TPMLAQYHALKQQYSDCLLFFRLGDFYELFYEDAQIGSKELGLVLTSRPAGKGKERIPMC 69 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H+A+ YI +L+ G+++A+CEQ+E +AK +VRR+V+R++TPGT E ++ Sbjct: 70 GVPYHSASSYISRLVSKGYKVALCEQLEDASQAK-----GIVRRDVIRVITPGTYFEKEV 124 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 + AV + A+++ STG F + + + +++ P+E++ L Sbjct: 125 CG------VAAVYVKNKKHHCAYLNPSTGEFVAGSFSSEGAQEFLLKFSPKELLV----L 174 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVD-------TFGSFSQVEK 257 + + L + L VF + I E + + Y + D G + Sbjct: 175 PNYPTEKLQKIL--------KVFIN-PIKEEDVEEGYRLLKEDMGVYHPTALGFEEEGPL 225 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 A Y+K TQ P +G P+ + + ID R LE++ + G + SLL Sbjct: 226 YACGVLYRYLKITQKGFMPLVGRPKPYSDEGYVRIDYRTRRGLELIESYEGREDLSLLGV 285 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 ID ++T G RL + P KI +++ +++ L+ ++++L+ PD+ R Sbjct: 286 IDRTLTSMGRRLLRFYLLHPFGKREKILKVQEAVEELLKDRELLKDVREVLEGMPDLERL 345 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 +SR+ P+D+ +++ + L ++ + LR EK++ L + L + + + Sbjct: 346 VSRISGNVATPRDLVLLKKAAEKVSKLKALLMERAKSQLLRELAEKMEDL-EDLRRDIDN 404 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 L +D P ++GG +++G + +LDE RS++++ ++I+ + + ET I +LKI N Sbjct: 405 TLVEDPPLHVKEGGLIKEGVNPTLDELRSIKEKGEQILREYEDRLRRETGINSLKIGFNK 464 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 +GY+IEVT + + F RQT+S+ RFTT EL LE ++ +A + Sbjct: 465 VMGYYIEVTKPNLRFVP------SYFKRRQTLSSGERFTTQELETLEEKLLSADVRIKEL 518 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + F L ++E+ ++ + + +A +D +LA +A ++ + +P + +++G Sbjct: 519 EYQLFLQLRERVLEKLPAVSSTASPVAHVDYLQSLAYVALQKGWIKPQMVEEPVLHIEEG 578 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE +K F+ ND + S ++++TGPNM GKS+++RQ AL+ ++A Sbjct: 579 RHPVVEAYVKD-----FVPNDTHMD-----ESSFVYIITGPNMAGKSSYIRQVALLTLLA 628 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 MGS++P A IGIV + +RVGS D LA G STFM EM+E A IL+ A +S ++LDE Sbjct: 629 HMGSFLPCRSARIGIVSSIHARVGSGDVLALGISTFMNEMLEVAGILSSADRRSLIVLDE 688 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 +GRGT+T DG++I+ A +EY+ R L+ATH+ ELT+L L N + VS Sbjct: 689 VGRGTSTHDGIAISKAIVEYIVRKIGARTLVATHYTELTELEDKLPHVVNYHMAVSRDGS 748 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILK--TFEKLYHHNQKD 849 I FL+++ G A+ S GI V K+AGLP V++RA ++L EK+Y +Q++ Sbjct: 749 QIKFLYRLRRGKAEASLGIYVAKMAGLPQEVVNRAQELLSEPILEKVYEKSQEE 802 >gi|329770226|ref|ZP_08261616.1| DNA mismatch repair protein MutS [Gemella sanguinis M325] gi|328837032|gb|EGF86676.1| DNA mismatch repair protein MutS [Gemella sanguinis M325] Length = 882 Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust. Identities = 281/859 (32%), Positives = 469/859 (54%), Gaps = 63/859 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM+ QY++IK D +FYR+GDFYE+FF+DA+ AS+ L ITLT R K IPMCG Sbjct: 4 TPMIEQYLKIKKEYQDMFLFYRLGDFYEMFFEDAVRASKILEITLTARDGGAEK-IPMCG 62 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H++ YI L+ G+++AICEQ+ P G +V R VV+++TPGT + Sbjct: 63 VPFHSSAGYIDTLVNNGYKVAICEQVSEP------GQGKIVERKVVQVITPGTYMNYK-- 114 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSE-KE 203 + ++N+L +V A+ DI TG + + D L ++++ + +E+I E ++ Sbjct: 115 NYDENNFLGSVYIKDNNIYFAFCDIMTGDSRCTILKTMDDLQDEVLKNNIKEVISIEGQK 174 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 L + Y + E N++ + N D ++ K A Sbjct: 175 LDISAYITEVEESDNLSKDKTNNLKDKNL------------------------KLCADIL 210 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQSLLKTIDYSI 322 + YI+KTQ + ++ E +++ + + NLE+ + ++ GS++ SLL +D + Sbjct: 211 LDYIEKTQNKDISSLKDFEVYFKDKFVYMTNYSIRNLEVTQNMANGSKKGSLLSIVDKTS 270 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T AG R + +PL D +I R + + F+++ + ++ LK D+ R +++ Sbjct: 271 TAAGSRKLKNWLENPLLDINEIKKRQEIVGDFVKHYFEKSDVKTSLKEVYDLERISTKVS 330 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--ELRGAVEKLKKLPQSLEKTLSSMLS 440 PK++ ++ ++ I N+ D + ++ +++L+ L LEKT+ Sbjct: 331 YNIVSPKELLNLKKTLKQIPQIKNILKGFDSEKLVDIANNIDELEDLHDFLEKTIHEEAG 390 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 + +DG ++ G + LD ++ +++ ++ + T IKNLK+ +N G Sbjct: 391 QTV----KDGNVIKLGFNEELDSYKNASKNGNKVLLEIEEREKNRTGIKNLKVGYNKIFG 446 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHR-QTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 YFIE+ + V K ++ + HR QT+SN RF + EL +E I N+ +EL Sbjct: 447 YFIEI----SKVGLKSVDPTELGYHRKQTLSNCERFISEELKQVEEHIVNSKTKIEELEL 502 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 + F+ + I E L + ++ ID+ ++L+ +A+E Y +P ++ + DGRH Sbjct: 503 QLFQEVKIKIHEYIPRLQRVANTLSDIDVFVSLSDVAEEYGYVKPDFNDDNVIDIVDGRH 562 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 PIVE+ + S+ +I+NDC + D+N + L+TGPNM GKST++RQ ALIVI+AQ+ Sbjct: 563 PIVERNV---SADSYISNDCKVE--KDEN---ILLITGPNMSGKSTYMRQLALIVILAQI 614 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPAS A + I DK+F+R+G++D+LA G+STFMVEMIE + L ++T S +I DEIG Sbjct: 615 GSFVPASSASLPIFDKIFTRIGASDDLAGGKSTFMVEMIEAKNALVESTANSLLIFDEIG 674 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGT+T DG+++A + +EY++ T +C+ L +TH+HELT L + N + + + + Sbjct: 675 RGTSTYDGIALAQSILEYINNTIKCKTLFSTHYHELTKLENITEGIKNIHVSAKEDHGKL 734 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 IFL+K+ G + SYGI V +LA LPN VI+ A ILK E ++ ++ Sbjct: 735 IFLYKINEGPIEKSYGIHVAQLAHLPNDVINGANKILKELENGNKGSE--------DLVN 786 Query: 860 KESKNNLSKNDKLFVEKIK 878 ES NN+ N K EKI+ Sbjct: 787 SESYNNVLTNTKELEEKIR 805 >gi|195973744|gb|ACG63437.1| DNA mismatch repair protein MutS [Francisella noatunensis] Length = 776 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 278/805 (34%), Positives = 428/805 (53%), Gaps = 38/805 (4%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 D L+FYRMGDFYELFFDDA A+ L ITLT RGK G+ IPM GVP H A YI K++K Sbjct: 1 DILLFYRMGDFYELFFDDAKNAAELLDITLTARGKSNGESIPMAGVPYHAAEGYIAKIVK 60 Query: 101 IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIR 160 G +AICEQI P +K V R V R++TP T++E+ L + L+++ Sbjct: 61 KGLSVAICEQIGDP-----SISKGPVERQVTRIITPATVSEEAFLDSNQDSILVSIYEKN 115 Query: 161 TEWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGN 218 ++ IA+ + G ++ +N L + I+++ P+EII + L K++F Sbjct: 116 NKYHIAYTSYTQGKIHLTNTVTNSSDLKNQILKLSPQEIITNSNNLVE---KNIFNK--P 170 Query: 219 VAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTI 278 V V + F + + + + N + + + + TA + ++Y+ T I Sbjct: 171 VKVLEEWYFSNFEAKKHILNSFDNSFANNILNLYKKEQLTAIGSILAYLTNTLKSIPKHI 230 Query: 279 GYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPL 338 ++ Q+ L ID +R+NLE L + + SLL +D T G RL +P Sbjct: 231 SDIHLDEDQNRLNIDINSRNNLE----LDNNSKSSLLNIMDKCKTSLGSRLLRRYFKNPT 286 Query: 339 TDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 D KI+ R ++I F + + IQ IL D+ R +SR+ +G +PKD+ + + Sbjct: 287 RDLNKISLRHNAIKSFRKQHYFL-KIQDILSYINDIERIISRVALGTVKPKDLVSLNSSL 345 Query: 399 RSGINILNLFLKNDLPE--ELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDG 456 + +L + + E + + ++ +L K L+ + D+ P RDGG ++ G Sbjct: 346 EQLPKLKSLLEEINTSEIININNHIHQIDELT----KLLNKAIVDNPPMTIRDGGVIKHG 401 Query: 457 ADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKD 516 D LDE R L+D S + + ++T I LK+ +N GY+IE++ A + + Sbjct: 402 FDQELDELRGLKDNSYDFLLKFETLQKQKTGINTLKVGYNRVHGYYIELSKQYADKVPAE 461 Query: 517 LESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESL 576 +I RQT+ R+ T EL E++I +A AL E ++ L N ++E + Sbjct: 462 ------YIRRQTLKASERYITDELKAFEDKILSAKEKALAREKLIYDTLLNKVLEYYSQI 515 Query: 577 DNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIA 636 + IA ID+ A A + N +P + + +K+ RH +E+ + + PFI Sbjct: 516 QQTAASIAKIDVLANFAERAIKLNLNQPKFNKTGKLDIKEARHLAIEQNIDE----PFIP 571 Query: 637 NDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKL 696 ND LS ++ L ++TGPNMGGKST++RQ A ++ +A +GS+VPASYA IG +D + Sbjct: 572 NDTLLST----DTYTLEIITGPNMGGKSTYMRQVAQLIFLAYIGSFVPASYADIGDIDTI 627 Query: 697 FSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIE 756 ++R+G++D+++SGRSTFMVEM ETA ILN AT +S VI+DEIGRGT+T DGLS+A A E Sbjct: 628 YTRIGASDDISSGRSTFMVEMTETAYILNNATKKSLVIMDEIGRGTSTFDGLSLAKACAE 687 Query: 757 YLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGI 816 + L ATH+ ELT+L N + + + I F+HKV+ G A SYGI Sbjct: 688 KFAKIGALT-LFATHYFELTELVNQYPNTKNIHFEAKEYKDNIYFMHKVVAGAAKKSYGI 746 Query: 817 QVGKLAGLPNTVISRAYDILKTFEK 841 QV KLAG+ V+ A L EK Sbjct: 747 QVAKLAGISKDVLESAKKNLANLEK 771 >gi|31615694|pdb|1NNE|A Chain A, Crystal Structure Of The Muts-Adpbef3-Dna Complex gi|31615695|pdb|1NNE|B Chain B, Crystal Structure Of The Muts-Adpbef3-Dna Complex Length = 765 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 274/825 (33%), Positives = 438/825 (53%), Gaps = 89/825 (10%) Query: 27 PMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI--PMC 84 P+++QY+E++ PD L+ +++GDFYE F +DA +R LG+ LT + KD PM Sbjct: 15 PLLQQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTS---KDFTTPMA 71 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G+P+ Y ++L+K+G R+A+ +Q+E EA+ LVRR V +L+TPGTL ++ L Sbjct: 72 GIPLRAFEAYAERLLKMGFRLAVADQVEPAEEAE-----GLVRREVTQLLTPGTLLQESL 126 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 L P ++NYL A+A W +A++D+STG FK + + L ++ R P E++ + + Sbjct: 127 L-PREANYLAAIA-TGDGWGLAFLDVSTGEFKGTVLKSKSALYDELFRHRPAEVLLAPEL 184 Query: 204 LSHA----EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 L + E++ F + + A +P G + A Sbjct: 185 LENGAFLDEFRKRFPVMLSEAPFEPE------------------------GEGPLALRRA 220 Query: 260 AAAAISYIKKTQ---MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 A ++Y ++TQ + +P Y D + + + A LE+ L G + +L Sbjct: 221 RGALLAYAQRTQGGALSLQPFRFY----DPGAFMRLPEATLRALEVFEPLRG--QDTLFS 274 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D + T G RL + PL D + RLD + F++ L ++++L D+ R Sbjct: 275 VLDETRTAPGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALREGVRRLLYRLADLER 334 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP--QSLEKT 434 +RL++GR PKD+ +R RS + IL ELR + + LP L++ Sbjct: 335 LATRLELGRASPKDLGALR---RS-LQILP---------ELRALLGEEVGLPDLSPLKEE 381 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L + L +D P +GG +R+G D LD R+ + L+ + E T I LK+ Sbjct: 382 LEAALVEDPPLKVSEGGLIREGYDPDLDALRAAHREGVAYFLELEERERERTGIPTLKVG 441 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY++EVT + K+ + QT+ + R+T E+ + E + Sbjct: 442 YNAVFGYYLEVTRPYYERVPKE------YRPVQTLKDRQRYTLPEMKEKEREVYRLEALI 495 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 E E F + Q+E+L A++++A +D+ ALA +A Y RP + + Sbjct: 496 RRREEEVFLEVRERAKRQAEALREAARILAELDVYAALAEVAVRYGYVRPRFGDRLQ--I 553 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 + GRHP+VE+ + F+ ND +++ +L L+TGPNM GKSTFLRQ ALI Sbjct: 554 RAGRHPVVERRTE------FVPNDLEMAH-------ELVLITGPNMAGKSTFLRQTALIA 600 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++AQ+GS+VPA AH+ + D +++R+G++D+LA G+STFMVEM E A IL +AT S V+ Sbjct: 601 LLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATENSLVL 660 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 LDE+GRGT++LDG++IA A E LHE R L ATH+ ELT L L R N + + Sbjct: 661 LDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYFELTAL--GLPRLKNLHVAARE 717 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF 839 G++F H+V+PG A SYG++V +AGLP V++RA +L+ Sbjct: 718 EAGGLVFYHQVLPGPASKSYGVEVAAMAGLPKEVVARARALLQAM 762 >gi|257386429|ref|YP_003176202.1| DNA mismatch repair protein MutS [Halomicrobium mukohataei DSM 12286] gi|257168736|gb|ACV46495.1| DNA mismatch repair protein MutS [Halomicrobium mukohataei DSM 12286] Length = 918 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 280/856 (32%), Positives = 437/856 (51%), Gaps = 61/856 (7%) Query: 1 MTKEFSSPQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDAL 60 M P+K+ +L TPMMRQY E+ DSLV +++GDFYE F A Sbjct: 1 MDAALGPPEKMAERADEL-------TPMMRQYYELCRAYDDSLVLFQVGDFYEAFCGAAE 53 Query: 61 LASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR 120 +R ITLTKR G+ M GVP+ A Y++ L+ G+R+AI +Q+E P Sbjct: 54 RVARLCEITLTKREDSTGQ-YAMAGVPIDNAESYVETLLDAGYRVAIADQVEDP-----D 107 Query: 121 GNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTS 180 +V R V R++TPGTLTED+LL D+NY+ A+ + +A +D+STG F +++ Sbjct: 108 AVSGVVDRAVTRIITPGTLTEDELLDSPDNNYVAALTADGRRYGLALLDVSTGDFYATSA 167 Query: 181 NH-DRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVF-FDHSISESR-- 236 + D + ++ R P E I + +FE V +VF F+ + R Sbjct: 168 DAVDAVADEVGRFAPAEAIVGPG--VDVDEDRVFEAAAMVTPYDESVFAFEDAADRVRTY 225 Query: 237 -------IADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQST 289 +AD + ++++ + A I + + R D + Sbjct: 226 FGDPDALLADDLEVRACGALLAYAEYTRGGGAGTSDEIADDDGGQLTYLTHLTRYDPREY 285 Query: 290 LFIDSAARSNLEIL--RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTR 347 + +D+ A +LE+ R + G ++L+ T+D + G R + + PL D+ +I R Sbjct: 286 MLLDAVALDSLELFERRAVRGHEGRTLVDTVDETACALGRRRLGDWLRRPLLDADRIERR 345 Query: 348 LDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDI-------AVIRDGIRS 400 +++ ++ + +L D+ R +SR+ GR +D+ AV+ D +R Sbjct: 346 HEAVAELVEALQRRERLHALLADVYDLERLISRVSRGRANARDLRSLAATLAVVPD-VRE 404 Query: 401 GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADAS 460 + + L DL E L + L + + +E + D P +G +R+G D Sbjct: 405 QLADADSALLADLHEGL----DPLTDVREEIEAAICP----DPPQEVTEGDVIREGYDDD 456 Query: 461 LDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESK 520 LD R KR I L++ E T I +LK+ HN+ GY+IEVT + + D E Sbjct: 457 LDALRETERSGKRWIDDLEINERERTGIDSLKVGHNSVHGYYIEVTDPNLDSVPDDYE-- 514 Query: 521 DRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNAS 580 RQT+ N RF T EL + E I A +A +E + F + AI ++E + + Sbjct: 515 ----RRQTLKNSERFVTPELREREEEIVRAETAADDLEYDLFCEVRAAIAAEAERVQALA 570 Query: 581 QVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCD 640 +A +D +A +A +YCRP + V GRHP+VE+ + F+ ND Sbjct: 571 DRLATLDALVAFGEVAATHDYCRPSV-GGDAIDVTAGRHPVVER-----AEASFVPNDAC 624 Query: 641 LSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRV 700 L+ P+ +LTGPNM GKST++RQ ALI ++AQ GS+VPA A++ IVD++F+RV Sbjct: 625 LT-PD----SFFTILTGPNMSGKSTYMRQIALICVLAQAGSFVPAREANLPIVDRVFTRV 679 Query: 701 GSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHE 760 G++D++A GRSTFM+EM E A IL AT+ S ++LDE+GRGT+T DGL+IA A E++H+ Sbjct: 680 GASDDIAGGRSTFMIEMTELADILQGATSDSLILLDEVGRGTSTADGLAIARAVTEHVHD 739 Query: 761 TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGK 820 L ATH HELT ++ L N + +G++F H V PG A SYGI+V Sbjct: 740 EIGAYTLFATHHHELTAVADELPGVRNRHFETRHDGDGVVFEHSVAPGAAAASYGIEVAA 799 Query: 821 LAGLPNTVISRAYDIL 836 LAG+P++V+ R+ +L Sbjct: 800 LAGVPDSVVERSRTVL 815 >gi|203284693|ref|YP_002222433.1| DNA mismatch repair protein [Borrelia duttonii Ly] gi|201084136|gb|ACH93727.1| DNA mismatch repair protein [Borrelia duttonii Ly] Length = 862 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 288/887 (32%), Positives = 474/887 (53%), Gaps = 56/887 (6%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TPMMRQY++IK DS++F+R+G FYE+FFDDA+ S+ LG+TLTKR +++P Sbjct: 8 KDITPMMRQYLDIKDKYKDSILFFRVGSFYEMFFDDAIEGSKLLGLTLTKR-----ENVP 62 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP HT+ YI+KLI + ++AICEQ L+ +G + R VV +++PG + ++ Sbjct: 63 MCGVPCHTSREYIKKLILLDRKVAICEQ---GLQTDPKGP---LEREVVEVISPGVVIDE 116 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDIST---GIFKISTSNHDRLISDIMRIDPREIIF 199 L +NYL+A++ + ++ ++ID+ST GI + ++L DI + P+EII Sbjct: 117 DFLQDDVNNYLVAISDYKDYYSFSYIDLSTSKLGIIFYKGNFLEKLRRDIEKYSPKEIIV 176 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 S+ + EY + P+ D I+ + +++NI ++ G F++ E Sbjct: 177 SDD--FYYEYLEKLVLDRFLVNKVPSWHLDKDIAIKSLKEHFNIVSLSVLG-FTESEPYY 233 Query: 260 AAA--AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLK 316 ++ I YIK I + +F+D + NLE+++ + + SL Sbjct: 234 ISSFLIIDYIKNNLKNLLINIDTININNDSEYMFLDDVTQINLELVKNNNDLTVCYSLYS 293 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 ++ T G RL E I +PL D IN RL + F N L ++ IL D+ R Sbjct: 294 VLNDCKTPMGKRLLREYILNPLLDIGAINNRLFHVEFLSNNVNLSMQLRDILSDVWDIER 353 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 +SRL++ + KD I++ +L F +L E ++ + Sbjct: 354 IISRLQMKKYVKKDFLFIKE------TLLAFFSVKELLNEYSFNYWIFDVNDETSIMEVY 407 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 S++ + + + ++ G + +D R +++ + + I + KI +LKIK Sbjct: 408 SLIDSSISNEQEE--LIKHGYNVKIDRLREIKNNASKYIDDYLNFERDFNKINSLKIKRT 465 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 N G F EVT S + FI Q +++ R+ T +LI+LE I +A ++ L Sbjct: 466 NIKGLFFEVTKSYYG------QVPSHFIESQNLNSAKRYKTNKLIELERDINDAEDNLLA 519 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 E E F+ ++ +++ S + ++ A ID+ A LA++ Y RPI+ N+ I++ Sbjct: 520 FEQEIFDEIALRVVKYSVIIKKIAEFFAYIDVIANFAYLARKNEYVRPILTNNKEIILEC 579 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLW-LLTGPNMGGKSTFLRQNALIVI 675 RHP+VE ++ + F N + NS K + L+TGPNM GKST+LRQ ALIV+ Sbjct: 580 ARHPVVEHYMR--GIEAFTKNSVKI------NSEKYFCLITGPNMAGKSTYLRQTALIVL 631 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 M+ +GS+VPAS A IGI DK+F R+G++DN++ G STF+VEM ETA+IL AT S +I+ Sbjct: 632 MSHIGSFVPASKAIIGITDKIFCRIGASDNISKGESTFLVEMNETANILRNATQNSLIIM 691 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGT+T DGL+IA++ +EY+ + + R L ATHFHEL+ ++ F N ++++ Sbjct: 692 DEVGRGTSTNDGLAIAYSIVEYILKHIKARSLFATHFHELSAINHD--SFVNLSMKIEQQ 749 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 + +IFL +V + +SYGI V ++AG+P V+ RA ILK+ H + Sbjct: 750 GDELIFLREVEEKPSLNSYGIYVAQIAGIPLEVVKRANIILKSLTSREHFCVSNFATMTS 809 Query: 856 EIQTKESKNNLSKNDKL--------FVEKIKCLNLDEMSPLTALKTL 894 I K + +L+ +L F+ +I N++ ++P A+ L Sbjct: 810 VIDEKLPEKSLNYKSELNAYFELQNFISQI---NINSITPFQAMNLL 853 >gi|7387928|sp|Q9ZIX6|MUTS_THECA RecName: Full=DNA mismatch repair protein mutS gi|4102012|gb|AAD01407.1| mismatch repair protein [Thermus caldophilus] Length = 817 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 282/884 (31%), Positives = 455/884 (51%), Gaps = 103/884 (11%) Query: 27 PMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI--PMC 84 P+++QY+E++ PD L+ +++GDFYE F +DA +R LG+ LT + KD PM Sbjct: 20 PLLQQYVELRDRYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTS---KDFTTPMA 76 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G+P+ + Y ++L+++G +A+ +Q+E EA+ LVRR V +L+TPGTLT++ L Sbjct: 77 GIPIRAFDAYAERLLRMGFGLAVADQVEPAEEAE-----GLVRREVTQLLTPGTLTQEAL 131 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 L P ++NYL A+A W +A++D+STG FK + + L ++ R P E++ + E Sbjct: 132 L-PREANYLAAIA-TGDGWGLAFLDVSTGEFKATLLKSKSALYDELFRHRPAEVLLA-PE 188 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 L E VAQ F +SE+ D G A A Sbjct: 189 LRENE----------AFVAQFRKRFPVMLSEA---------PFDPEGEAPLALSRARGAL 229 Query: 264 ISYIKKTQ---MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 ++Y + TQ + +P Y D + + + A+ LE+ L G + +L +D Sbjct: 230 LAYARATQGGALSVRPFRLY----DPGAIVRLPEASLKALEVFEPLRG--QDTLFGVLDE 283 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G RL + PL + + RLD + F++ L ++++L D+ R +R Sbjct: 284 TRTAPGRRLLQAWLRHPLLERGPLEARLDRVERFVREGALREGVRRLLFRLADLERLATR 343 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP--QSLEKTLSSM 438 L++ R P+D+A +R R + IL EL G + + LP L + L + Sbjct: 344 LELSRASPRDLAALR---RRSLEILP---------ELEGLLGEEVGLPDLSGLLEELRAA 391 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 L +D P +GG +R+G D LD R L+++ E T I LK+ +N Sbjct: 392 LVEDPPLKVSEGGVIREGYDPDLDALRRAHADPVAYFLDLEVREKESTGIPTLKVGYNAV 451 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY++EVT + ++ + QT+ + R+T E+ + E + E Sbjct: 452 FGYYLEVTRPYYEKVPQE------YRPVQTLKDRQRYTLPEMKERERELYRLEALIKRRE 505 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 E F L ++ E+L A++++A +D+ ALA +A Y RP ++ GR Sbjct: 506 EEVFIALRERARKEGEALREAARILAELDVYAALAEVAVRHGYTRPRFGERLR--IRAGR 563 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+V + F+ ND +++ +L +TGPNM GKSTFLRQ ALI ++AQ Sbjct: 564 HPVVRR------RTAFVPNDLEMAH-------ELVRVTGPNMAGKSTFLRQTALIALLAQ 610 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA A + + D +++R+G++D+LA G+STFMVEM E A +L +AT +S V+LDE+ Sbjct: 611 IGSFVPAEEAELPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALVLKEATERSLVLLDEV 670 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT++LDG++IA A E LHE RC L ATH+ ELT L +L R N + + G Sbjct: 671 GRGTSSLDGVAIATALAEALHE-RRCYTLFATHYFELTAL--ALPRLKNLHVAAKEEEGG 727 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 ++F H+V+PG A SYG++V ++AGLP V+ RA +L +++ Sbjct: 728 LVFYHQVLPGPASKSYGVEVAEMAGLPKEVVERARALLSAMAARREGALEEV-------- 779 Query: 859 TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTL 902 +E++ L+ D ++PL AL+ L+ +KA L Sbjct: 780 ---------------LERLLALDPDRLTPLEALRFLHELKALAL 808 >gi|148238420|ref|YP_001223807.1| DNA mismatch repair protein [Synechococcus sp. WH 7803] gi|189083201|sp|A5GHU5|MUTS_SYNPW RecName: Full=DNA mismatch repair protein mutS gi|147846959|emb|CAK22510.1| DNA mismatch repair protein MutS [Synechococcus sp. WH 7803] Length = 910 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 275/830 (33%), Positives = 448/830 (53%), Gaps = 43/830 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TPM+R Y+E+K+ +P+ ++ YR+GDF+E FF+DA+ SR L +TLT + GK +G+ +PM Sbjct: 100 TPMLRHYVELKAEHPERVLLYRLGDFFECFFEDAVELSRVLELTLTGKEGGKAIGR-VPM 158 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G+P H A Y +LI+ G+ +A+C+Q+E+ +L++R + R++TPGT+ E+ Sbjct: 159 AGIPHHAAERYCAELIRRGYSVALCDQLET-----TPAKGALLKRGITRVLTPGTVLEEG 213 Query: 144 LLSPTDSNYLMAV------ARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPRE 196 +LS +N+L AV ++ W +A D+STG ++ + D L + ++D E Sbjct: 214 MLSARRNNWLAAVVVEPATSKTPLRWGLASADVSTGDVRVMERTGSDGLHQQLAQLDASE 273 Query: 197 IIFSEKELSHAEYKSLF--ETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS- 253 ++++ S + + E L +A+ F +E + +Y + ++D G Sbjct: 274 LLWAGDGDSGEAARPTWCPERLRLSPMAR--TPFSAPQAEQTLKTHYQLASLDGLGLPEL 331 Query: 254 QVEKTAAAAAISYIKKTQMVNKPT---IGYPEREDIQSTLFIDSAARSNLEILRTL-SGS 309 + A + Y+ TQ + + + P L +D+ R NLE+ T G Sbjct: 332 PLALRAFGGLLQYVNDTQPLEEDARVPLDVPAIVHSGEALVLDAQTRRNLELTATQRDGQ 391 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 + SLL ID ++T GGR + +PL + + I R ++ + L ++++L+ Sbjct: 392 LQGSLLWAIDQTLTAMGGRCLRRWLEAPLMNLSAIQQRQAVVSLLVSGRPLRQALRRLLR 451 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDL---PEELRGAVEKLKK 426 D+ R R G +D+ I DG+ + L L++ L P EL A+++ + Sbjct: 452 PMGDLERLAGRAGAGHAGARDLVAIADGLER-LPQLASRLQSSLEQWPNELT-ALQQPEP 509 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 L ++ L D P +GG + DG D LD R+ D +A + E + Sbjct: 510 ALAELAASIRQTLIDAPPLSLSEGGLIHDGVDPLLDGLRNQLDDQDAWLAEQERLERERS 569 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 NL+++++ GYF+ V+ + AS + + +I RQT++N RF T EL + E R Sbjct: 570 GNNNLRLQYHRTFGYFLAVSKAKASSVP------EHWIRRQTLANEERFITPELKEREGR 623 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 I A E E + L + + + A++ IA +D LA A +C P++ Sbjct: 624 IFQLRARACQREYELYCSLREQVGAMAAPIRAAARGIACLDALSGLADTAATGGWCAPLL 683 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 ++S + GRHP+VE+ L + S F ND +L D L +LTGPN GKS + Sbjct: 684 NDSRQLEIVAGRHPVVEQLLVETS---FTPNDLNLGSGTD-----LIVLTGPNASGKSCY 735 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 LRQ LI ++AQ+GS+VPA+ A +G+ D++F+RVG+ D+LA+G+STFMVEM ETA+IL+ Sbjct: 736 LRQIGLIQLLAQIGSWVPATSARVGLADRIFTRVGAVDDLAAGQSTFMVEMAETANILHH 795 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 A+ +S V+LDEIGRGTAT DGLSIAWA E+L + R + ATH+HEL +L+ Sbjct: 796 ASARSLVLLDEIGRGTATFDGLSIAWAVSEHLAGDLKARTVFATHYHELNNLAGERANVA 855 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 N + V ++ ++FLH+V G A SYGI+ +LAG+P V+ RA +L Sbjct: 856 NFQVMVEETGADLVFLHQVQCGGASRSYGIEAARLAGVPTPVVQRARQVL 905 >gi|195973742|gb|ACG63436.1| DNA mismatch repair protein MutS [Francisella noatunensis] Length = 776 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 278/805 (34%), Positives = 427/805 (53%), Gaps = 38/805 (4%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 D L+FYRMGDFYELFFDDA A+ L ITLT RGK G+ IPM GVP H A YI K++K Sbjct: 1 DILLFYRMGDFYELFFDDAKNAAELLDITLTARGKSNGESIPMAGVPYHAAEGYIAKIVK 60 Query: 101 IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIR 160 G +AICEQI P +K V R V R++TP T++E+ L + L+++ Sbjct: 61 KGLSVAICEQIGDP-----SISKGPVERQVTRIITPATVSEEAFLDSNQDSILVSIYEKN 115 Query: 161 TEWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGN 218 ++ IA+ + G ++ +N L + I+++ P+EII + L K++F Sbjct: 116 NKYHIAYTSYTQGKIHLTNTVTNSSDLKNQILKLSPQEIITNSNNLVE---KNIFNK--P 170 Query: 219 VAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTI 278 V V + F + + + + N + + + + TA + ++Y+ T I Sbjct: 171 VKVLEEWYFSNFEAKKHILNSFDNSFANNILNLYKKEQLTAIGSILAYLTNTLKSIPKHI 230 Query: 279 GYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPL 338 ++ Q+ L ID +R+NLE L + + SLL +D T G RL +P Sbjct: 231 SDIHLDEDQNRLNIDINSRNNLE----LDNNSKSSLLNIMDKCKTSLGSRLLRRYFKNPT 286 Query: 339 TDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 D KI+ R + I F + + IQ IL D+ R +SR+ +G +PKD+ + + Sbjct: 287 RDLNKISLRHNVIKSFRKQHYFL-KIQDILSYINDIERIISRVALGTVKPKDLVSLNSSL 345 Query: 399 RSGINILNLFLKNDLPE--ELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDG 456 + +L + + E + + ++ +L K L+ + D+ P RDGG ++ G Sbjct: 346 EQLPKLKSLLEEINTSEIININNHIHQIDELT----KLLNKAIVDNPPMTIRDGGVIKHG 401 Query: 457 ADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKD 516 D LDE R L+D S + + ++T I LK+ +N GY+IE++ A + + Sbjct: 402 FDQELDELRGLKDNSYDFLLKFETLQKQKTGINTLKVGYNRVHGYYIELSKQYADKVPAE 461 Query: 517 LESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESL 576 +I RQT+ R+ T EL E++I +A AL E ++ L N ++E + Sbjct: 462 ------YIRRQTLKASERYITDELKAFEDKILSAKEKALAREKLIYDTLLNKVLEYYSQI 515 Query: 577 DNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIA 636 + IA ID+ A A + N +P + + +K+ RH +E+ + + PFI Sbjct: 516 QQTAASIAKIDVLANFAERAIKLNLNQPKFNKTGKLDIKEARHLAIEQNIDE----PFIP 571 Query: 637 NDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKL 696 ND LS ++ L ++TGPNMGGKST++RQ A ++ +A +GS+VPASYA IG +D + Sbjct: 572 NDTLLST----DTYTLEIITGPNMGGKSTYMRQVAQLIFLAYIGSFVPASYADIGDIDTI 627 Query: 697 FSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIE 756 ++R+G++D+++SGRSTFMVEM ETA ILN AT +S VI+DEIGRGT+T DGLS+A A E Sbjct: 628 YTRIGASDDISSGRSTFMVEMTETAYILNNATKKSLVIMDEIGRGTSTFDGLSLAKACAE 687 Query: 757 YLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGI 816 + L ATH+ ELT+L N + + + I F+HKV+ G A SYGI Sbjct: 688 KFAKIGALT-LFATHYFELTELVNQYPNTKNIHFEAKEYKDNIYFMHKVVAGAAKKSYGI 746 Query: 817 QVGKLAGLPNTVISRAYDILKTFEK 841 QV KLAG+ V+ A L EK Sbjct: 747 QVAKLAGISKDVLESAKKNLANLEK 771 >gi|203288226|ref|YP_002223241.1| DNA mismatch repair protein [Borrelia recurrentis A1] gi|201085446|gb|ACH95020.1| DNA mismatch repair protein [Borrelia recurrentis A1] Length = 862 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 288/887 (32%), Positives = 473/887 (53%), Gaps = 56/887 (6%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TPMMRQY++IK DS++F+R+G FYE+FFDDA+ S+ LG+TLTKR +++P Sbjct: 8 KDITPMMRQYLDIKDKYKDSILFFRVGSFYEMFFDDAIEGSKLLGLTLTKR-----ENVP 62 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP HT+ YI+KLI + ++AICEQ L+ +G + R VV +++PG + ++ Sbjct: 63 MCGVPCHTSREYIKKLILLDRKVAICEQ---GLQTDPKGP---LEREVVEVISPGVIIDE 116 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDIST---GIFKISTSNHDRLISDIMRIDPREIIF 199 L +NYL+A++ + + ++ID+ST GI + ++L DI + P+EII Sbjct: 117 DFLQDDVNNYLVAISDYKDYCSFSYIDLSTSKLGIIFYKGNFLEKLRRDIEKYSPKEIIV 176 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 S+ + EY + P+ D I+ + +++NI ++ G F++ E Sbjct: 177 SDD--FYYEYLEKLVLDRFLVNKVPSWHLDKDIAIKSLKEHFNIVSLSVLG-FTESEPYY 233 Query: 260 AAA--AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLK 316 ++ I YIK I + +F+D + NLE+++ + + SL Sbjct: 234 ISSFLIIDYIKNNLKNLLINIDTININNDSEYMFLDDVTQINLELVKNNNDLTVCYSLYS 293 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 ++ T G RL E I +PL D IN RL + F N L ++ IL D+ R Sbjct: 294 VLNDCKTPMGKRLLREYILNPLLDIGAINNRLFHVEFLSNNVNLSMQLRDILSDVWDIER 353 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 +SRL++ + KD I++ +L F +L E ++ + Sbjct: 354 IISRLQMKKYVKKDFLFIKE------TLLAFFSVKELLNEYSFKYWIFDVNDETSIMEVY 407 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 S++ + + + ++ G + +D R +++ + + I + KI +LKIK Sbjct: 408 SLIDSSISNEQEE--LIKHGYNVKIDRLREIKNNASKYIDDYLNFERDFNKINSLKIKRT 465 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 N G F EVT S + FI Q +++ R+ T +LI+LE I +A ++ L Sbjct: 466 NIKGLFFEVTKSYYG------QVPSHFIESQNLNSAKRYKTNKLIELERDINDAEDNLLA 519 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 E E F+ ++ +++ S + ++ A ID+ A LA++ Y RPI+ N+ I++ Sbjct: 520 FEQEIFDEIALRVVKYSVIIKKIAEFFAYIDVIANFAYLARKNEYVRPILTNNKEIILEC 579 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLW-LLTGPNMGGKSTFLRQNALIVI 675 RHP+VE ++ + F N + NS K + L+TGPNM GKST+LRQ ALIV+ Sbjct: 580 ARHPVVEHYMR--GIEAFTKNSVKI------NSEKYFCLITGPNMAGKSTYLRQTALIVL 631 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 M+ +GS+VPAS A IGI DK+F R+G++DN++ G STF+VEM ETA+IL AT S +I+ Sbjct: 632 MSHIGSFVPASKAIIGITDKIFCRIGASDNISKGESTFLVEMNETANILRNATQNSLIIM 691 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGT+T DGL+IA++ +EY+ + + R L ATHFHEL+ ++ F N ++++ Sbjct: 692 DEVGRGTSTNDGLAIAYSIVEYILKHIKARSLFATHFHELSAINHD--SFVNLSMKIEQQ 749 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 + +IFL +V + +SYGI V ++AG+P V+ RA ILK+ H + Sbjct: 750 GDELIFLREVEEKPSLNSYGIYVAQIAGIPLEVVKRANIILKSLTSREHFCVSNFATMTS 809 Query: 856 EIQTKESKNNLSKNDKL--------FVEKIKCLNLDEMSPLTALKTL 894 I K + +L+ +L F+ +I N++ ++P A+ L Sbjct: 810 VIDEKLPEKSLNYKSELNAYFELQNFISQI---NINSITPFQAMNLL 853 >gi|195973738|gb|ACG63434.1| DNA mismatch repair protein MutS [Francisella philomiragia] Length = 776 Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust. Identities = 278/805 (34%), Positives = 424/805 (52%), Gaps = 38/805 (4%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 D L+FYRMGDFYELFFDDA A+ L ITLT RGK G IPM GVP H A YI K++K Sbjct: 1 DILLFYRMGDFYELFFDDAKNAAELLDITLTARGKSNGDSIPMAGVPYHAAEGYIAKIVK 60 Query: 101 IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIR 160 G +AICEQI P +K V R V R++TP T++E+ L + L+++ Sbjct: 61 KGLSVAICEQIGDP-----STSKGPVERQVTRIITPATVSEEAFLDSNQDSILVSIYEKN 115 Query: 161 TEWAIAWIDISTGIFKI--STSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGN 218 ++ IA+ + G I + +N L + I+++ P+EII + L K++F Sbjct: 116 NKYHIAYTSYTQGKIHILNTVTNSSDLKNQILKLSPQEIITNSNSLVE---KNIFNK--P 170 Query: 219 VAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTI 278 V V + F + + + + N + + + + T + ++Y+ T I Sbjct: 171 VKVLEEWYFSNFEAKKHILNSFDNSFANNILNLYKKEQLTVIGSILAYLTNTLKSTPKHI 230 Query: 279 GYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPL 338 ++ Q+ L ID +R+NLE L + + SLL +D T G RL +P Sbjct: 231 SDILLDEDQNILNIDINSRNNLE----LDNNSKSSLLNIMDKCKTSLGSRLLRRYFKNPT 286 Query: 339 TDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 D KI+ R + I F Q + IQ IL D+ R +SR+ +G +PKD+ + + Sbjct: 287 RDLNKISLRHNVIKSFKQQHYFL-KIQDILSYINDIERIISRIALGTVKPKDLVSLNSSL 345 Query: 399 RSGINILNLFLKNDLPE--ELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDG 456 + +L + + E + + ++ +L K L+ + D+ P RDGG ++ G Sbjct: 346 EQLPKLKSLLEEINTSEIININNHIHQIDELT----KLLNKAIVDNPPMTIRDGGVIKHG 401 Query: 457 ADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKD 516 D LDE R L+D S + + ++T I LK+ +N GY+IE++ A + + Sbjct: 402 FDQELDELRGLKDNSYDFLLKFETLQKQKTGINTLKVGYNRVHGYYIELSKQYADKVPTE 461 Query: 517 LESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESL 576 +I RQT+ R+ T EL E++I +A AL E ++ L N ++E + Sbjct: 462 ------YIRRQTLKASERYITDELKAFEDKILSAKEKALAREKLIYDTLLNKVLEYYSQI 515 Query: 577 DNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIA 636 + IA ID+ A A + N +P + + +K+ RH +E+ + + PFI Sbjct: 516 QQTAASIAKIDVLANFAERAIKLNLNQPKFNKAGKLDIKEARHLAIEQNIDE----PFIP 571 Query: 637 NDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKL 696 ND LS ++ L ++TGPNMGGKST++RQ A ++ +A +GS+VPASYA IG +D + Sbjct: 572 NDTLLST----DTYTLEIITGPNMGGKSTYMRQVAQLIFLAYIGSFVPASYADIGDIDTI 627 Query: 697 FSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIE 756 ++R+G++D+++SGRSTFMVEM ETA ILN AT +S VI+DEIGRGT+T DGLS+A A E Sbjct: 628 YTRIGASDDISSGRSTFMVEMTETAYILNNATKKSLVIMDEIGRGTSTFDGLSLAKACAE 687 Query: 757 YLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGI 816 + L ATH+ ELT+L N + + + I F+HK + G A SYGI Sbjct: 688 KFAKIGALT-LFATHYFELTELVNQYPNTKNIHFEAKEYKDNIYFMHKAVAGAAKKSYGI 746 Query: 817 QVGKLAGLPNTVISRAYDILKTFEK 841 QV KLAG+ V+ A L EK Sbjct: 747 QVAKLAGISKDVLESAKKNLANLEK 771 >gi|198417081|gb|ACH87842.1| MutS [Francisella noatunensis subsp. noatunensis] Length = 776 Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust. Identities = 278/805 (34%), Positives = 427/805 (53%), Gaps = 38/805 (4%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 D L+FYRMGDFYELFFDDA A+ L ITLT RGK G+ IPM GVP H A YI K++K Sbjct: 1 DILLFYRMGDFYELFFDDAKNAAELLDITLTARGKSNGESIPMAGVPYHAAEGYIAKIVK 60 Query: 101 IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIR 160 G +AICEQI P +K V R V R++TP T++E+ L + L+++ Sbjct: 61 KGLSVAICEQIGDP-----SISKGPVERQVTRIITPATVSEEAFLDSNQDSILVSIYEKN 115 Query: 161 TEWAIAWIDISTGIFKIS--TSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGN 218 ++ IA+ + G ++ +N L + I+++ P+EII + L K++F Sbjct: 116 NKYHIAYTSYTQGKIHLTNTVTNSSDLKNQILKLSPQEIITNSNNLVE---KNIFNK--P 170 Query: 219 VAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTI 278 V V + F + + + + N + + + + TA + ++Y+ T I Sbjct: 171 VKVLEEWYFSNFEAKKHILNSFDNSFANNILNLYKKEQLTAIGSILAYLTNTLKSIPKHI 230 Query: 279 GYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPL 338 ++ Q+ L ID +R+NLE L + + SLL +D T G RL +P Sbjct: 231 SDIHLDEDQNRLNIDINSRNNLE----LDNNSKSSLLNIMDKCKTSLGSRLLRRYFKNPT 286 Query: 339 TDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 D KI+ R + I F + + IQ IL D+ R +SR+ +G +PKD+ + + Sbjct: 287 RDLNKISLRHNVIKSFRKQHXFL-KIQDILSYINDIERIISRVALGTVKPKDLVSLNSSL 345 Query: 399 RSGINILNLFLKNDLPE--ELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDG 456 + +L + + E + + ++ +L K L+ + D+ P RDGG ++ G Sbjct: 346 EQLPKLKSLLEEINTSEIININNHIHQIDELT----KLLNKAIVDNPPMTIRDGGVIKHG 401 Query: 457 ADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKD 516 D LDE R L+D S + + ++T I LK+ +N GY+IE++ A + + Sbjct: 402 FDQELDELRGLKDNSYDFLLKFETLQKQKTGINTLKVGYNRVHGYYIELSKQYADKVPAE 461 Query: 517 LESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESL 576 +I RQT+ R+ T EL E++I +A AL E ++ L N ++E + Sbjct: 462 ------YIRRQTLKASERYITDELKAFEDKILSAKEKALAREKLIYDTLLNKVLEYYSQI 515 Query: 577 DNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIA 636 + IA ID+ A A + N +P + + +K+ RH +E+ + + PFI Sbjct: 516 QQTAASIAKIDVLANFAERAIKLNLNQPKFNKTGKLDIKEARHLAIEQNIDE----PFIP 571 Query: 637 NDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKL 696 ND LS ++ L ++TGPNMGGKST++RQ A ++ +A +GS+VPASYA IG +D + Sbjct: 572 NDTLLST----DTYTLEIITGPNMGGKSTYMRQVAQLIFLAYIGSFVPASYADIGDIDTI 627 Query: 697 FSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIE 756 ++R+G++D+++SGRSTFMVEM ETA ILN AT +S VI+DEIGRGT+T DGLS+A A E Sbjct: 628 YTRIGASDDISSGRSTFMVEMTETAYILNNATKKSLVIMDEIGRGTSTFDGLSLAKACAE 687 Query: 757 YLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGI 816 + L ATH+ ELT+L N + + + I F+HKV+ G A SYGI Sbjct: 688 KFAKIGALT-LFATHYFELTELVNQYPNTKNIHFEAKEYKDNIYFMHKVVAGAAKKSYGI 746 Query: 817 QVGKLAGLPNTVISRAYDILKTFEK 841 QV KLAG+ V+ A L EK Sbjct: 747 QVAKLAGISKDVLESAKKNLANLEK 771 >gi|313125313|ref|YP_004035577.1| DNA mismatch repair protein muts [Halogeometricum borinquense DSM 11551] gi|312291678|gb|ADQ66138.1| DNA mismatch repair protein MutS [Halogeometricum borinquense DSM 11551] Length = 941 Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust. Identities = 271/843 (32%), Positives = 457/843 (54%), Gaps = 61/843 (7%) Query: 8 PQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLG 67 PQK+ + + +L TPM+ QY+++ +PD++V +++GDFYE F + A +R Sbjct: 26 PQKMVAAREEL-------TPMLSQYLDLCESHPDAIVMFQVGDFYEAFCEAAEEVARVCE 78 Query: 68 ITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVR 127 +TLTKR G PM G+P+ A Y++ L+ G+R+A+ +Q+E EA LV Sbjct: 79 VTLTKREDSTGT-YPMAGIPIDNAASYLEALLDAGYRVAVADQVEDASEAS-----GLVD 132 Query: 128 RNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLIS 187 R V +++TPGT+ +D+LLS + YL AVA E A+A +D+STG ++++ + + Sbjct: 133 RAVTQVITPGTVVDDELLSGATATYLGAVAGSGDETALATVDVSTGECQVTSGSAYEIGE 192 Query: 188 DIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVD 247 ++ R+ P E++ + +++ FETL V+ P F SE+ A +V Sbjct: 193 ELDRLAPAELLSA---ADAPDFELGFETL--VSNPDPEAFDVDGASETLSAYVSAPESV- 246 Query: 248 TFGSFSQVEKTAAAAAISYIKKTQMVNKPT--IGYPEREDIQSTLFIDSAARSNLEILRT 305 ++ E A + Y + TQ + P + R D + +L +D+ A +LE+ + Sbjct: 247 ---VENESEMRAVGGLLDYAEYTQGDDGPLEYVSRVRRYDPERSLQLDATAIRSLELFES 303 Query: 306 LSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQ 365 S S ++L+ +D + G R + P D +I R D++ I P+ ++ Sbjct: 304 RSPSGGRTLVGVLDETACALGRRRLTAWLRRPSVDEREIRRRHDAVGELIDRPLARETVR 363 Query: 366 KILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLK 425 L D+ R +SR+ R +D+ ++ + + + + + + + L+ Sbjct: 364 DHLSEVYDLERLVSRVSRERANARDLRALKTTLDAVPEVKSALSEME--------TDPLQ 415 Query: 426 KLPQSLEKT------LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQ 479 +L SL++ + + D P +GG +R+G D LDE R+ + + +++L+ Sbjct: 416 RLCDSLDELADVRDLIGEAIRPDPPQEITEGGVIREGFDDELDEIRATEREGREWVSNLE 475 Query: 480 LKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLE 539 + E T I +L++ +N GY+IEVT+ + + D + RQT+ N RF T E Sbjct: 476 EQEQERTGIDSLEVGYNQVHGYYIEVTNPNLDSVPDD------YTRRQTLKNSERFYTPE 529 Query: 540 LIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQ 599 L E+ I +A+ A +E E F + + E+ E L + + +A +D+ A +A Sbjct: 530 LKRREDEILSASEKADALEYEVFTNVRADVAEEVERLQSLADSLATLDVLATFAAVAAAN 589 Query: 600 NYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPN 659 +Y RP + T ++ GRHP+VE+T + F+ N P D + G + ++TGPN Sbjct: 590 DYVRPEMGTDT-VEIEAGRHPVVERTQGE-----FVPN------PADFSDGHVAVITGPN 637 Query: 660 MGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIE 719 M GKST++RQ ALI I+AQ GS+VPA A + I+D++F+RVG++D++A G+STFM EM E Sbjct: 638 MSGKSTYMRQVALIAILAQAGSFVPARAARLPILDRIFTRVGASDDIAGGQSTFMREMAE 697 Query: 720 TASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLS 779 IL+ AT S V+LDE+GRGT+T DGL+IA AT E++H+ L ATH+H+LT LS Sbjct: 698 LTDILHNATEDSLVLLDEVGRGTSTTDGLAIARATTEFVHDEVGATTLFATHYHDLTALS 757 Query: 780 KSLKRFHNA--TLQVSDSNEG---IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYD 834 + L N T++ ++ G + FLH+V G + SYG++V KLAG+P+TV+ RA + Sbjct: 758 ERLPEAFNLHFTVEKTERESGEPDVTFLHRVADGPSSSSYGVEVAKLAGVPSTVVERARE 817 Query: 835 ILK 837 ++ Sbjct: 818 YIR 820 >gi|195973736|gb|ACG63433.1| DNA mismatch repair protein MutS [Francisella philomiragia] Length = 776 Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust. Identities = 280/805 (34%), Positives = 427/805 (53%), Gaps = 38/805 (4%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 D L+FYRMGDFYELFFDDA A+ L ITLT RGK G IPM GVP H A YI K++K Sbjct: 1 DILLFYRMGDFYELFFDDAKNAAELLDITLTARGKSNGDSIPMAGVPYHAAEGYIAKIVK 60 Query: 101 IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIR 160 G +AICEQI P +K V R V R++TP T++E+ L + L+++ Sbjct: 61 KGLSVAICEQIGDP-----STSKGPVERQVTRIITPATVSEEAFLDSNQDSILVSIYEKN 115 Query: 161 TEWAIAWIDISTG-IFKIST-SNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGN 218 ++ IA+ + G I I+T +N L + I+++ P+EII + L K++F Sbjct: 116 NKYHIAYTSYTQGKIHLINTVTNSSDLKNQILKLSPQEIITNSNSLVE---KNIFNK--P 170 Query: 219 VAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTI 278 V V + F + + + + N + + + + T + ++Y+ T I Sbjct: 171 VKVLEEWYFSNFEAKKHILNSFDNSFANNILNLYKKEQLTVIGSILAYLTNTLKSTPKHI 230 Query: 279 GYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPL 338 ++ Q+ L ID +R+NLE L + + SLL +D T G RL +P Sbjct: 231 SDILLDEDQNILNIDINSRNNLE----LDNNSKSSLLNIMDKCKTSLGSRLLRRYFKNPT 286 Query: 339 TDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 D KI+ R + I F Q+ + IQ IL D+ R +SR+ +G +PKD+ + + Sbjct: 287 RDLNKISLRHNVIKSFKQHHYFL-KIQDILSYINDIERIISRVALGTVKPKDLVSLNSSL 345 Query: 399 RSGINILNLFLKNDLPE--ELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDG 456 + +L + + E + + ++ +L + L K + D+ P RDGG ++ G Sbjct: 346 EQLPKLKSLLEEINTSEIININNHIHQIDELTKLLNKAIV----DNPPMTIRDGGVIKHG 401 Query: 457 ADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKD 516 D LDE R L+D S + + ++T I LK+ +N GY+IE++ A + + Sbjct: 402 FDQELDELRGLKDNSYDFLLKFETLQKQKTGINTLKVGYNRVHGYYIELSKQYADKVPTE 461 Query: 517 LESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESL 576 +I RQT+ R+ T EL E++I +A AL E ++ L N ++E + Sbjct: 462 ------YIRRQTLKASERYITDELKAFEDKILSAKEKALAREKLIYDTLLNKVLEYYSQI 515 Query: 577 DNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIA 636 + IA ID+ A A + N +P + + +K+ RH +E+ + + PFI Sbjct: 516 QQTAASIAKIDVLANFAERAIKLNLNQPKFNKAGKLDIKEARHLAIEQNIDE----PFIP 571 Query: 637 NDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKL 696 ND LS ++ L ++TGPNMGGKST++RQ A ++ +A +GS+VPASYA IG +D + Sbjct: 572 NDTLLST----DTYTLEIITGPNMGGKSTYMRQVAQLIFLAYIGSFVPASYADIGDIDTI 627 Query: 697 FSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIE 756 ++R+G++D+++SGRSTFMVEM ETA ILN AT +S VI+DEIGRGT+T DGLS+A A E Sbjct: 628 YTRIGASDDISSGRSTFMVEMTETAYILNNATKKSLVIMDEIGRGTSTFDGLSLAKACAE 687 Query: 757 YLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGI 816 + L ATH+ ELT+L N + + + I F+HK + G A SYGI Sbjct: 688 KFAKIG-AMTLFATHYFELTELVNQYPNTKNIHFEAKEYKDNIYFMHKAVAGAAKKSYGI 746 Query: 817 QVGKLAGLPNTVISRAYDILKTFEK 841 QV KLAG+ V+ A L EK Sbjct: 747 QVAKLAGISKDVLESAKKNLANLEK 771 >gi|323342238|ref|ZP_08082470.1| DNA mismatch repair protein MutS [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463350|gb|EFY08544.1| DNA mismatch repair protein MutS [Erysipelothrix rhusiopathiae ATCC 19414] Length = 835 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 277/893 (31%), Positives = 468/893 (52%), Gaps = 81/893 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY++IK D+LVFYR+GDFYELFF+DA+ AS+ L + LT R + PMCG Sbjct: 7 TPMLQQYMDIKKNTNDALVFYRLGDFYELFFEDAITASKVLDLVLTARSAGKDQKAPMCG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H A YIQKL+ G+++AI EQ+E P EAK +V+R+VV +VTPGT E Sbjct: 67 VPHHAAQGYIQKLVAAGYKVAIVEQVEDPKEAK-----GIVKRDVVEIVTPGTYFE---- 117 Query: 146 SPTDSNYLMAVARIRTEWAIAWI---DISTGIFKISTSNHD--RLISDIMRIDPREIIFS 200 D N +A I + A I DI +G + +D +I + + +EI+ S Sbjct: 118 --MDDNETREIASITLDLVYATIVSCDIVSGNLRAIRVMNDFVEIIKVLQQFQVKEIVVS 175 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 E H + K + E + V + +++ + + T T Q Sbjct: 176 E----HFDSKIINEIKNKTEIY---VSYQEELADE--VQHQDPTIRKTQARLIQYLIYTH 226 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 +++++ + ++N ++ L +D A +NLE++ G +E SL I++ Sbjct: 227 KRSLNHLSEVVVLND-----------EAYLRMDYATMTNLELIDHQKG-KELSLFHFINH 274 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G R E + PL + I R I I++ +L + + LK + D+ R ++R Sbjct: 275 TKTNMGARALKEMLMQPLVNVESIEKRHLQIETLIEDYLLADSLSHSLKETYDIHRVIAR 334 Query: 381 LKIGRGEPKDIAVIRDGIRS---------GINILNLFLKNDLPEELRGAVEKLKKLPQSL 431 L + +D+ ++ + + GI+ + L + L + + Sbjct: 335 LSTAKHNAQDLVRLKKTLGTFKQMQETVDGIDCFSFMLVDPLLD---------------V 379 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 + L + + DD P ++G + G + LDE L ++ + + + + E+T IKNL Sbjct: 380 YQLLDTHILDDAPVALKEGRTFKQGIHSELDELLELSKNGRKWLINFEAEQREKTGIKNL 439 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 K+ + GY+IE+T ++ D +I +QT++N R+ + L + E + + A+ Sbjct: 440 KVGYTRAFGYYIEITKGQIENVRDDF----GYIRKQTLTNAERYISEALQEYELKTSQAS 495 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 L IE E F+ +S I + + + IA++D ++L+ ++ Y RP + Sbjct: 496 ERILEIEHELFDKVSRYISQYTSQIHKIGSAIALMDALLSLSEISALPGYQRPQFVSGNV 555 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 +K+G+HP++E TLK +IA+D + S +LTGPNMGGKST++R A Sbjct: 556 LDIKNGKHPVLESTLKDHQ---YIASDVLMDT-----SRNTLILTGPNMGGKSTYMRMVA 607 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 L VI+AQ+G YVP + +VD++F+R+G++D++ G+STFMVEM+E + L++AT S Sbjct: 608 LNVILAQIGCYVPCETMTLSLVDQIFTRMGASDDILMGQSTFMVEMMEAQAALSRATKHS 667 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 V+ DEIGRGT+T DG+++A A IEY++ + + R + +TH+HEL L N ++ Sbjct: 668 LVLFDEIGRGTSTYDGMALAQAIIEYINNSIQSRTIFSTHYHELVTLESMYDGIKNIHVE 727 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR 851 V + N+ + FL+KVI G AD SYGI V +LA LP ++I RA L+ E N+ D+ Sbjct: 728 VHEENDDVTFLYKVIDGRADKSYGINVARLAHLPQSIIERAKHNLEVLE--LSKNRLDID 785 Query: 852 LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTLEK 904 ++ + N+ KN K++ L++++++P+ AL L +K+ +K Sbjct: 786 TKVVTVEIEPQGYNIVKN------KLQSLDVNQLTPIEALMVLSELKSIIEDK 832 >gi|251772273|gb|EES52843.1| DNA mismatch repair protein MutS [Leptospirillum ferrodiazotrophum] Length = 856 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 272/831 (32%), Positives = 441/831 (53%), Gaps = 59/831 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ RQY+ ++ ++++F+R+GDF+ELF + A LASR LG+TLT R K +PMCG Sbjct: 20 TPLFRQYLGLRKEAGEAILFFRLGDFFELFGEQAELASRLLGVTLTSRDKSRPDPLPMCG 79 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P + Y+ KLI G+ +AI EQ ++ L R +VR VT TL ED Sbjct: 80 IPAKSLEMYLPKLIHAGYSVAIAEQA-----TQESDPSGLFPRKIVRTVTRFTLLEDPSR 134 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKI----STSNHDRLISDIMRIDPREIIFSE 201 +AV R W A +D+++G + + S+ D L+ + R + R++I Sbjct: 135 EEGAPQNGVAVVRRGEAWGAAVLDVTSGRIAVWASENPSDRDLLLDFLGRKEARQLIVES 194 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSIS---ESRIADYYNITTVDT---FGSFSQV 255 E++ AE+ + +L + +A FD S S R+ + ++ FG S Sbjct: 195 SEIA-AEFPGI-PSLVHSRLAP----FDLSGSLPPSYRLPELPEVSRDAVRLLFGFLSDY 248 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEIL-RTLSG---SRE 311 EKT + +++ + E ++L +D +L+IL R G R Sbjct: 249 EKTV----LGHLRGVVL-----------EGAGNSLALDRWTIRHLDILPREGMGQERGRA 293 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 SL+ +D T G R+ + +P D ++ +R I F + P L + + K+L Sbjct: 294 ASLVSLLDRCRTPPGSRMLRSWLLAPEADVNEVLSRHRVIRGFDERPRLSDRVDKVLGGV 353 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL-FLKNDLPEELRGAVEKLKKLPQS 430 D+ R L+R+ +G +D+ R S +++L++ L+ P R +L P Sbjct: 354 GDLERILARIAMGNRLHRDLPEFRQSFSSALDLLDVEGLEELFPGYGREFGLRLHTAP-- 411 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L L+ + DD P +G +RD D +L R + + R I+SL+ + T ++ Sbjct: 412 LRDLLARAIVDDPPPVLGEGPIIRDEFDEALSGYRRIESEGDRFISSLEERERSRTGVET 471 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 L+I++N GY+IEV+ + A + D ++ +QT++N RFT EL+ E + A Sbjct: 472 LRIRYNQVAGYYIEVSKAQAQKMPAD------YLRKQTLTNSERFTLPELVSFEGSLREA 525 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP-IIDNS 609 + L E E L ++ Q E + S +A +D+ ++ + ++ Y P + Sbjct: 526 RSRVLAREAEILGELGREVLAQREGIHLLSDFVARVDVLLSFFEIGRKMRYALPDFVPEG 585 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 ++++GRHP++E + + +PF+ ND DL G+ +LTGPNM GKST++RQ Sbjct: 586 EPLVIRNGRHPVLEARM---APEPFMPNDTDLVA------GEFIVLTGPNMAGKSTYMRQ 636 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALIV+MA G+ VPA A I D++ +RVG+ DN+ G STFMVEM E A IL+ AT Sbjct: 637 VALIVLMAHAGAPVPADEARIPPTDRIIARVGAQDNILEGASTFMVEMQEVARILSSATP 696 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 +S V+LDE+GRGTAT DG++IAWA E++H+ + R L ATH+HEL++L++ +R N T Sbjct: 697 RSLVLLDEVGRGTATFDGMAIAWAVSEFIHDRIQSRTLFATHYHELSELARRRERVRNQT 756 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 ++VS +F H+++ G A+ SYGI+V +LAGLP V+ RA +IL +E Sbjct: 757 VRVSIRQGRPLFEHRIVDGRAEQSYGIEVARLAGLPEEVVGRASEILGFWE 807 >gi|195973732|gb|ACG63431.1| DNA mismatch repair protein MutS [Francisella philomiragia] Length = 776 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 277/805 (34%), Positives = 425/805 (52%), Gaps = 38/805 (4%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 D L+FYRMGDFYELFFDDA A+ L ITLT RGK G IPM GVP H A YI K++K Sbjct: 1 DILLFYRMGDFYELFFDDAKNAAELLDITLTARGKSNGDSIPMAGVPYHAAEGYIAKIVK 60 Query: 101 IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIR 160 G +AICEQI P +K V R V R++TP T++E+ L + L+++ Sbjct: 61 KGLSVAICEQIGDP-----STSKGPVERQVTRIITPATVSEEAFLDSNQDSILVSIYEKN 115 Query: 161 TEWAIAWIDISTGIFKI--STSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGN 218 ++ IA+ + G + + +N L + I+++ P+EII + L K++F Sbjct: 116 NKYHIAYTSYTQGKIHLINTVTNSSDLKNQILKLSPQEIITNSNSLVE---KNIFNK--P 170 Query: 219 VAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTI 278 V V + F + + + + N + + + + T + ++Y+ T I Sbjct: 171 VKVLEEWYFSNFEAKKHILNSFDNSFANNILNLYKKEQLTVIGSILAYLTNTLKSTPKHI 230 Query: 279 GYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPL 338 ++ Q+ L ID +R+NLE L + + SLL +D T G RL +P Sbjct: 231 SDILLDEDQNILNIDINSRNNLE----LDNNSKSSLLNIMDKCKTSLGSRLLRRYFKNPT 286 Query: 339 TDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 D KI+ R I F Q+ + IQ IL D+ R +SR+ +G +PKD+ + + Sbjct: 287 RDLNKISLRHSVIKSFKQHHYFL-KIQDILSYINDIERIISRVALGTVKPKDLVSLNSSL 345 Query: 399 RSGINILNLFLKNDLPE--ELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDG 456 + +L + + E + + ++ +L K L+ + D+ P RDGG ++ G Sbjct: 346 EQLPKLKSLLEEINTSEIININNHIHQIDELT----KLLNKAIVDNPPMTIRDGGVIKHG 401 Query: 457 ADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKD 516 D LDE R L+D S + + ++T I LK+ +N GY+IE++ A+ + + Sbjct: 402 FDQELDELRGLKDNSYDFLLKFETLQKQKTGINTLKVGYNRVHGYYIELSKQYANKVPTE 461 Query: 517 LESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESL 576 +I RQT+ R+ T EL E++I +A AL E ++ L N ++E + Sbjct: 462 ------YIRRQTLKASERYITDELKAFEDKILSAKEKALAREKLIYDTLLNKVLEYYSQI 515 Query: 577 DNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIA 636 + IA ID+ A A + N +P + + +K+ RH +E+ + + PFI Sbjct: 516 QQTAASIAKIDVLANFAERAIKLNLNQPKFNKTGKLDIKEARHLAIEQNIDE----PFIP 571 Query: 637 NDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKL 696 ND LS ++ L ++TGPNMGGKST++RQ A ++ +A +GS+VPASYA IG +D + Sbjct: 572 NDTLLST----DTYTLEIITGPNMGGKSTYMRQVAQLIFLAYIGSFVPASYADIGDIDTI 627 Query: 697 FSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIE 756 ++R+G++D+++SGRSTFMVEM ETA ILN AT +S VI+DEIGRGT+T DGLS+A A E Sbjct: 628 YTRIGASDDISSGRSTFMVEMTETAYILNNATKKSLVIMDEIGRGTSTFDGLSLAKACAE 687 Query: 757 YLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGI 816 + L ATH+ ELT+L N + + + I F+HK + G A SYGI Sbjct: 688 KFAKIGALT-LFATHYFELTELVNQYPNTKNIHFEAKEYKDNIYFMHKAVAGAAKKSYGI 746 Query: 817 QVGKLAGLPNTVISRAYDILKTFEK 841 QV KLAG+ V+ A L EK Sbjct: 747 QVAKLAGISKDVLESAKKNLANLEK 771 >gi|195973730|gb|ACG63430.1| DNA mismatch repair protein MutS [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 776 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 280/805 (34%), Positives = 427/805 (53%), Gaps = 38/805 (4%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 D L+FYRMGDFYELFFDDA A+ L ITLT RGK G IPM GVP H A YI K++K Sbjct: 1 DILLFYRMGDFYELFFDDAKNAAELLDITLTARGKSNGDSIPMAGVPYHAAEGYIAKIVK 60 Query: 101 IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIR 160 G +AICEQI P +K V R V R++TP T++E+ L + L+++ Sbjct: 61 KGLSVAICEQIGDP-----STSKGPVERQVTRIITPATVSEEAFLDSNQDSILVSIYEKN 115 Query: 161 TEWAIAWIDISTG-IFKIST-SNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGN 218 ++ IA+ + G I I+T +N L + I+++ P+EII + L K++F Sbjct: 116 NKYHIAYTSYTQGKIHLINTVTNSSDLKNQILKLSPQEIITNSNSLIE---KNIFNK--P 170 Query: 219 VAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTI 278 V V + F + + + + N + + + + T + ++Y+ T I Sbjct: 171 VKVLEEWYFSNFEAKKHILNSFDNSFANNILNLYKKEQLTVIGSILAYLTNTLKSTPKHI 230 Query: 279 GYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPL 338 ++ Q+ L ID +R+NLE L + + SLL +D T G RL +P Sbjct: 231 SDILLDEDQNILNIDINSRNNLE----LDNNSKSSLLNIMDKCKTSLGSRLLRRYFKNPT 286 Query: 339 TDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 D KI+ R + I F Q+ + IQ IL D+ R +SR+ +G +PKD+ + + Sbjct: 287 RDLNKISLRHNVIKSFKQHHYFL-KIQDILSYINDIERIISRVALGTVKPKDLVSLNSSL 345 Query: 399 RSGINILNLFLKNDLPE--ELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDG 456 + +L + + E + + ++ +L K L+ + D+ P RDGG ++ G Sbjct: 346 EQLPKLKSLLEEINTSEIININNHIHQIDELT----KLLNKAIVDNPPMTIRDGGVIKHG 401 Query: 457 ADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKD 516 D LDE R L+D S + + ++T I LK+ +N GY+IE++ A + + Sbjct: 402 FDQELDELRGLKDNSYDFLLKFETLQKQKTGINTLKVGYNRVHGYYIELSKQYADKVPTE 461 Query: 517 LESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESL 576 +I RQT+ R+ T EL E++I +A AL E ++ L N ++E + Sbjct: 462 ------YIRRQTLKASERYITDELKAFEDKILSAKEKALAREKLIYDTLLNKVLEYYSQI 515 Query: 577 DNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIA 636 + IA ID+ A A + N +P + + +K+ RH +E+ + + PFI Sbjct: 516 QQTAASIAKIDVLANFAERAIKLNLNQPKFNKTGKLDIKEARHLAIEQNIDE----PFIP 571 Query: 637 NDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKL 696 ND LS ++ L ++TGPNMGGKST++RQ A ++ +A +GS+VPASYA IG +D + Sbjct: 572 NDTLLST----DTYTLEIITGPNMGGKSTYMRQVAQLIFLAYIGSFVPASYADIGDIDTI 627 Query: 697 FSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIE 756 ++R+G++D+++SGRSTFMVEM ETA ILN AT +S VI+DEIGRGT+T DGLS+A A E Sbjct: 628 YTRIGASDDISSGRSTFMVEMTETAYILNNATKKSLVIMDEIGRGTSTFDGLSLAKACAE 687 Query: 757 YLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGI 816 + L ATH+ ELT+L N + + + I F+HK + G A SYGI Sbjct: 688 KFAKIGALT-LFATHYFELTELVNQYPNTKNIHFEAKEYKDNIYFMHKAVAGAAKKSYGI 746 Query: 817 QVGKLAGLPNTVISRAYDILKTFEK 841 QV KLAG+ V+ A L EK Sbjct: 747 QVAKLAGISKDVLESAKKNLANLEK 771 >gi|87123273|ref|ZP_01079124.1| DNA mismatch repair protein MutS [Synechococcus sp. RS9917] gi|86168993|gb|EAQ70249.1| DNA mismatch repair protein MutS [Synechococcus sp. RS9917] Length = 911 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 278/829 (33%), Positives = 446/829 (53%), Gaps = 42/829 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TPM+R Y+E+K+ +P+ ++ YR+GDF+E FF+DA+ +R L +TLT + GK +G+ +PM Sbjct: 102 TPMLRHYVELKAAHPERVLLYRLGDFFECFFEDAIELARVLELTLTGKEGGKAIGR-VPM 160 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G+P H A Y LI+ G+ +A+C+Q+E+ +L++R++ R++TPGT+ E+ Sbjct: 161 AGIPHHAAERYCADLIRRGYSVALCDQLET-----TPAKGALLKRDITRVLTPGTVLEEG 215 Query: 144 LLSPTDSNYLMAV---ARIRTE---WAIAWIDISTGIFK-ISTSNHDRLISDIMRIDPRE 196 +L +N+L AV A T+ W +A D+STG + I + L + +++ E Sbjct: 216 MLRARRNNWLAAVVVEAAKGTQPFRWGLAHADVSTGDVRVIEQTGSAGLHQQLSQLEAAE 275 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ-V 255 ++++ A + L +A F +E+ + +Y + +D G Q + Sbjct: 276 LVWAAPPEESAAPAWCPQGLRLTPMA--TTPFSRPEAEATLQQHYGLANLDGLGLADQPL 333 Query: 256 EKTAAAAAISYIKKTQMV----NKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSR 310 A + Y++ TQ + N P + P+ L +D+ R NLE+ T G Sbjct: 334 ALRAIGGLLRYLRDTQPLEDDLNVP-LEVPQIVHSGDALILDAQTRRNLELTSTQRDGQL 392 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 + SLL ID ++T GGR + +PL D +I R ++ ++ L ++++L+S Sbjct: 393 QGSLLWAIDRTLTAMGGRCLRRWLEAPLMDRRQIEQRQALVSTLVEQRSLRQGLRRLLRS 452 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI---LNLFLKNDLPEELRGAVEKLKKL 427 D+ R R G +D+ I DG+ + LN L + P+ L+ L Sbjct: 453 MADLERLAGRAGAGHAGARDLVAIADGLERLPQLAGRLNTGLDDRHPDWLQALCTPDPAL 512 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 + L + + L D P +GG + DG D LD R+ D + +A + + + Sbjct: 513 AE-LAQAVRHALIDTPPLSLSEGGLIHDGVDPLLDGLRNQLDDQEAWLAEQERLERQTSG 571 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 NL+++++ GYF+ V+ + A+ + D +I RQT++N RF T EL E I Sbjct: 572 NANLRLQYHRTFGYFLAVSKAKAASVP------DHWIRRQTLANEERFITPELKQREGTI 625 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 A E E F L + + + A++ +A +D LA +A +C P I Sbjct: 626 FQLRARACQREYELFCQLREQVGAMAAPIRQAARAVAALDAVCGLAEVAATSAWCAPTIS 685 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 + + GRHP+VE+ L ++S F AND L D L +LTGPN GKS +L Sbjct: 686 DGRELQITAGRHPVVEQLLVERS---FTANDVHLGQGTD-----LVVLTGPNASGKSCYL 737 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ LI ++AQ+GS+VPA A +GI D++F+RVG+ D+LA+G+STFMVEM ETA+IL+ A Sbjct: 738 RQIGLIQLLAQIGSWVPAESATVGITDRIFTRVGAVDDLAAGQSTFMVEMAETANILHHA 797 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 T++S V+LDEIGRGTAT DGLSIAWA E+L + R + ATH+HEL +L+ N Sbjct: 798 TDRSLVLLDEIGRGTATFDGLSIAWAVSEHLAGDLKARTVFATHYHELNNLAAERPNVAN 857 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 + V ++ + ++FLH+V G A SYGI+ +LAG+P V+ RA +L Sbjct: 858 FQVLVEETGDDLLFLHRVQAGGASRSYGIEAARLAGVPAPVVQRARQVL 906 >gi|325277031|ref|ZP_08142693.1| DNA mismatch repair protein MutS [Pseudomonas sp. TJI-51] gi|324097840|gb|EGB96024.1| DNA mismatch repair protein MutS [Pseudomonas sp. TJI-51] Length = 710 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 250/736 (33%), Positives = 402/736 (54%), Gaps = 36/736 (4%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY ++K+ +PD L+FYRMGDFYE+F++DA A++ L ITLT RG+ G+ IPMCG+P Sbjct: 1 MMQQYWKLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQSIPMCGIP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H+ Y+ KL+K+G + ICEQI P + K V R VVR++TPGT++++ LL Sbjct: 61 FHSLEGYLAKLVKLGESVVICEQIGDPATS-----KGPVERQVVRIITPGTVSDEALLDE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSE---KE 203 N + A+ + +A +DI++G F + + L++++ R++P E++ + ++ Sbjct: 116 RRDNLIAALLGDERLFGLAVLDITSGNFSVQEIKGWENLLAELERLNPVELLIPDDWPRD 175 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 L + A + FD + + + + FG AA Sbjct: 176 LPAEKRPG--------ARRRAPWDFDRDSARKALCQQFATKDLKGFGCDKLTLAIGAAGC 227 Query: 264 -ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 ++Y K+TQ P + E + T+ +D A+R NLE+ L+G R+ +L +D Sbjct: 228 LLTYAKETQRTALPHLRSLRHERLDDTVILDGASRRNLELDINLAGGRDNTLQSVVDRCQ 287 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T RL + + PL D + R DSI + +Q LK D+ R L+R+ Sbjct: 288 TAMASRLLSRWLNRPLRDLKVLQARQDSIRCLLDG-YRFEKLQPQLKEIGDIERILARIG 346 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 + P+D+A +RD + + + N + + P R A + L L + D+ Sbjct: 347 LRNARPRDLARLRDALGALPELQNAMTELEAPHLARLAA--ITGTYPELASLLERAIIDN 404 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P RDGG L+ G D LD+ ++ + + + + L+ + T + NLK+ +N GYF Sbjct: 405 PPAVIRDGGVLKAGYDNELDDLLAISENAGQFLIDLEAREKARTGLANLKVGYNRVHGYF 464 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IE+ + A D +I RQT+ RF T EL E++ +A + AL E + Sbjct: 465 IELPTKQAEQAPGD------YIRRQTLKGAERFITPELKAFEDKALSAKSRALAREKMLY 518 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 + L +I L +++ +A +D+ LA A + P + ++ GRHP+V Sbjct: 519 DALLETLISHLAPLQDSAAALAELDVLSNLAERALNLDLNCPRFVDEPCLRIEQGRHPVV 578 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 E+ L + PF+AND L N+ ++ ++TGPNMGGKST++RQ ALIV++A +GS+ Sbjct: 579 EQVL----TTPFVANDLGLD-----NNTRMLIITGPNMGGKSTYMRQTALIVLLAHIGSF 629 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V++DE+GRGT Sbjct: 630 VPAASCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDRSLVLMDEVGRGT 689 Query: 743 ATLDGLSIAWATIEYL 758 +T DGLS+AWA E L Sbjct: 690 STFDGLSLAWAAAERL 705 >gi|124004833|ref|ZP_01689676.1| DNA mismatch repair protein MutS [Microscilla marina ATCC 23134] gi|123989511|gb|EAY29057.1| DNA mismatch repair protein MutS [Microscilla marina ATCC 23134] Length = 814 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 273/837 (32%), Positives = 456/837 (54%), Gaps = 51/837 (6%) Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M G P H + Y+ KL++ G R+AIC+QIE P R K LV+R V LVTPG D Sbjct: 1 MAGFPHHALDAYLPKLVRAGQRVAICDQIEDP-----RFTKKLVKRGVTELVTPGVSYND 55 Query: 143 QLLSPTDSNYLMAVARIRTE-----WAIAWIDISTGIFKISTSNHDRLISDIMRIDPREI 197 +L +NYL +++ IR + IA++DISTG F + + + + + +P EI Sbjct: 56 SVLEVNRNNYLASLS-IRKSAKEEVFGIAFLDISTGEFFTAEGDFEYIDKLLQSFNPSEI 114 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 +FS+ + LF+ N A FF ++ + + ++ ++ FG E Sbjct: 115 LFSKT--GRQTFVDLFKDRFN-AFFLEEWFFTYNFGQDILNRHFKTKSLKGFGIADLPEG 171 Query: 258 TAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 AAA AI Y+ +T N I R + +++D NLE+L SL++ Sbjct: 172 IAAAGAILHYLTETHHNNIQHISSIGRIEANRYVWLDKFTIRNLELLFP-QQENGVSLIQ 230 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D ++T G RL + +A PL D +I RL + +Q+ L+ I + LK + D+ R Sbjct: 231 VLDNTVTPMGARLLRKWVALPLKDKQRIEERLSIVESILQDNDLLEDITQHLKQTGDIER 290 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 +S++ R +P+++ I+ G+ ++ + + LP+ + +L + Q L + Sbjct: 291 LISKVASRRVKPRELLQIKKGLIQAASLKVILQHHPLPQ-FQKFANQLNEC-QFLVDKID 348 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 L D+ +GG ++ + LDE + SK+ + ++ K EET I++LK+ +N Sbjct: 349 GELLDEPKNVLNEGGLIKPKVNDELDELHEIVYNSKQYLEKVREKAIEETGIQSLKLDYN 408 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 G+++EVT+ + K+ +I +QT+ N R+ T EL E++I +A + Sbjct: 409 KVFGFYLEVTNKYKHQVPKE------WIRKQTLVNAERYITEELKVYEDKIVHAEER--I 460 Query: 557 IELESFEILSNAIIEQSESLDNASQ----VIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 ELES L + ++ Q+ N Q ++A +D ++ A +A++ NY +P ++ Sbjct: 461 WELES--QLYHELVLQAGDFTNPIQQNARILATLDCLVSFAFIARKYNYTKPTVNEGKAI 518 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 +K GRHP++E+ L + +P+I ND L D ++ ++TGPNM GKS LRQ AL Sbjct: 519 NIKAGRHPVIERQL--LAEEPYIPNDTLL----DDEDQQIMVITGPNMSGKSALLRQVAL 572 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 I +MAQ+GS+VPA A IGIVDK+F+RVG++DN+A G STFMVEM+ETASI+N + +S Sbjct: 573 ITLMAQVGSFVPADAADIGIVDKIFTRVGASDNIAKGESTFMVEMMETASIMNNLSERSL 632 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHE--TNRCRGLLATHFHELTDLSKSLKRFHNATL 790 V++DEIGRGT+T DG+SIAWA +E+LH+ R + L ATH+HEL +L+K + R N + Sbjct: 633 VLMDEIGRGTSTYDGISIAWAILEFLHDYRKGRPKTLFATHYHELNELAKDMPRIKNFHV 692 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM 850 V + ++F+ K+ G ++HS+GI V ++AG+P ++ RA DI+ E + + Sbjct: 693 TVKEVGNKVVFMRKLATGGSEHSFGIHVARMAGMPRRIVLRADDIMHHLEA---NRSQGS 749 Query: 851 RLYYPEIQTKESKNNLSKN--------DKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + PE+ T+ ++ N + E +K ++++ ++P+ AL L +K Sbjct: 750 GISSPEVVTESIPKDVQMNIFEAKDPTAQQIQEALKEVDVNTITPVEALLKLNELKG 806 >gi|55379528|ref|YP_137378.1| DNA mismatch repair protein MutS [Haloarcula marismortui ATCC 43049] gi|55232253|gb|AAV47672.1| DNA mismatch repair protein MutS [Haloarcula marismortui ATCC 43049] Length = 964 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 272/875 (31%), Positives = 449/875 (51%), Gaps = 68/875 (7%) Query: 1 MTKEFSSPQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDAL 60 M P+++ +LEE+L TPMM QY E+ D+LV +++GDFYE F A Sbjct: 18 MDAALGPPEQM----AELEEDL---TPMMAQYYELCRQYDDALVLFQVGDFYEAFCAAAK 70 Query: 61 LASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR 120 +R ITLT+R G+ PM G+P+ A Y++ L+ G+R+AI +Q+E P E Sbjct: 71 RVARLCEITLTQREDSTGE-YPMAGIPIDNAESYVETLLDAGYRVAIADQVEDPDEVS-- 127 Query: 121 GNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKIST 179 +V R V R+VTPGTLTE +LL D+NY+ A+ + +A +DISTG + S Sbjct: 128 ---GVVERAVTRIVTPGTLTESELLGGADNNYVAALT-AGERYGLALLDISTGDCYATSV 183 Query: 180 SNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIAD 239 + + ++ R P E I + ++F V + F +E R+ Sbjct: 184 GSESAVADELSRFGPAEAIVGPD--VDVDRDAVFGPACLVTRYDADAFA-QDRAEDRVGQ 240 Query: 240 YYN-----------ITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPT-----IGYPER 283 Y+ I ++++ + ++ A + P + + R Sbjct: 241 YFGPPERLLAGGAEIRACGGLLAYAEYTRGSSGAVGPDGEPVDPDVDPAGTLDYLNHLTR 300 Query: 284 EDIQSTLFIDSAARSNLEIL--RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDS 341 D + + +D+ A +LE+ R++ G ++L+ T+D + G R + + PL D+ Sbjct: 301 YDPREYMLLDAVAVESLELFKRRSVRGHENRTLVDTVDETACALGRRKLTDWLRRPLLDA 360 Query: 342 TKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSG 401 +I R ++ ++P + +L D+ R +SR+ GR +D+ + + Sbjct: 361 DRIEARHGAVAELQRDPATREELSALLAEVYDLERLISRVSRGRANARDLRSLAATLSVV 420 Query: 402 INILNLFLKND--LPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADA 459 +I + D L +L ++ L + + +E + D P +GG +R+G D Sbjct: 421 PDIRDHLADADARLLADLHATLDPLAETREEIEAAIRP----DPPQQVTEGGVIREGYDE 476 Query: 460 SLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLES 519 LD RS K I L+ E T I +LK+ H + GY+IEVT+++ + +D Sbjct: 477 ELDRLRSTEQSGKEWIDELEASERERTGIDSLKVGHTSVHGYYIEVTNANLDAVPED--- 533 Query: 520 KDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNA 579 + RQT+ N R+ T L + E+ I A ++A +E + F + + + +++E + Sbjct: 534 ---YQRRQTLKNSERYYTPALKEREDEILRAESAADDLEYDLFCAVRDEVADEAERVQAL 590 Query: 580 SQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDC 639 + +A +D+ ++ A +A + +YCRP + S V GRHP+VE+T FI ND Sbjct: 591 ADRLARLDVLVSFAEVAAQYDYCRPTV-GSDGIDVTAGRHPVVERT-----EDAFIPNDT 644 Query: 640 DLS---CPNDKNSGK-----------LWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPA 685 L P ++ L ++TGPNM GKST++RQ ALI ++AQ GS+VPA Sbjct: 645 HLGSGPVPASRDGSDDGVTADDIQPFLAVVTGPNMSGKSTYMRQVALICLLAQSGSFVPA 704 Query: 686 SYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATL 745 A + I+D++F+RVG++D++A GRSTFM+EM E A+IL+ AT S V+LDE+GRGT+T Sbjct: 705 KAADLPILDRVFTRVGASDDIAGGRSTFMIEMTELATILDAATENSLVLLDEVGRGTSTA 764 Query: 746 DGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKV 805 DGL+IA A EYLH+ L ATH H+LT ++ +L N + S + + F H++ Sbjct: 765 DGLAIARAVTEYLHDEVGAYTLFATHHHDLTAVAAALSGATNRHFETSREDGDVRFDHEL 824 Query: 806 IPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 PG A SYG++V +AG+P++V+ R+ D+L E Sbjct: 825 APGPAAASYGVEVASMAGVPDSVVERSRDLLADAE 859 >gi|115299205|sp|Q5UYI1|MUTS2_HALMA RecName: Full=DNA mismatch repair protein mutS 2 Length = 947 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 272/875 (31%), Positives = 449/875 (51%), Gaps = 68/875 (7%) Query: 1 MTKEFSSPQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDAL 60 M P+++ +LEE+L TPMM QY E+ D+LV +++GDFYE F A Sbjct: 1 MDAALGPPEQM----AELEEDL---TPMMAQYYELCRQYDDALVLFQVGDFYEAFCAAAK 53 Query: 61 LASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR 120 +R ITLT+R G+ PM G+P+ A Y++ L+ G+R+AI +Q+E P E Sbjct: 54 RVARLCEITLTQREDSTGE-YPMAGIPIDNAESYVETLLDAGYRVAIADQVEDPDEVS-- 110 Query: 121 GNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTG-IFKIST 179 +V R V R+VTPGTLTE +LL D+NY+ A+ + +A +DISTG + S Sbjct: 111 ---GVVERAVTRIVTPGTLTESELLGGADNNYVAALT-AGERYGLALLDISTGDCYATSV 166 Query: 180 SNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIAD 239 + + ++ R P E I + ++F V + F +E R+ Sbjct: 167 GSESAVADELSRFGPAEAIVGPD--VDVDRDAVFGPACLVTRYDADAFA-QDRAEDRVGQ 223 Query: 240 YYN-----------ITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPT-----IGYPER 283 Y+ I ++++ + ++ A + P + + R Sbjct: 224 YFGPPERLLAGGAEIRACGGLLAYAEYTRGSSGAVGPDGEPVDPDVDPAGTLDYLNHLTR 283 Query: 284 EDIQSTLFIDSAARSNLEIL--RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDS 341 D + + +D+ A +LE+ R++ G ++L+ T+D + G R + + PL D+ Sbjct: 284 YDPREYMLLDAVAVESLELFKRRSVRGHENRTLVDTVDETACALGRRKLTDWLRRPLLDA 343 Query: 342 TKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSG 401 +I R ++ ++P + +L D+ R +SR+ GR +D+ + + Sbjct: 344 DRIEARHGAVAELQRDPATREELSALLAEVYDLERLISRVSRGRANARDLRSLAATLSVV 403 Query: 402 INILNLFLKND--LPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADA 459 +I + D L +L ++ L + + +E + D P +GG +R+G D Sbjct: 404 PDIRDHLADADARLLADLHATLDPLAETREEIEAAIRP----DPPQQVTEGGVIREGYDE 459 Query: 460 SLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLES 519 LD RS K I L+ E T I +LK+ H + GY+IEVT+++ + +D Sbjct: 460 ELDRLRSTEQSGKEWIDELEASERERTGIDSLKVGHTSVHGYYIEVTNANLDAVPED--- 516 Query: 520 KDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNA 579 + RQT+ N R+ T L + E+ I A ++A +E + F + + + +++E + Sbjct: 517 ---YQRRQTLKNSERYYTPALKEREDEILRAESAADDLEYDLFCAVRDEVADEAERVQAL 573 Query: 580 SQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDC 639 + +A +D+ ++ A +A + +YCRP + S V GRHP+VE+T FI ND Sbjct: 574 ADRLARLDVLVSFAEVAAQYDYCRPTV-GSDGIDVTAGRHPVVERT-----EDAFIPNDT 627 Query: 640 DLS---CPNDKNSGK-----------LWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPA 685 L P ++ L ++TGPNM GKST++RQ ALI ++AQ GS+VPA Sbjct: 628 HLGSGPVPASRDGSDDGVTADDIQPFLAVVTGPNMSGKSTYMRQVALICLLAQSGSFVPA 687 Query: 686 SYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATL 745 A + I+D++F+RVG++D++A GRSTFM+EM E A+IL+ AT S V+LDE+GRGT+T Sbjct: 688 KAADLPILDRVFTRVGASDDIAGGRSTFMIEMTELATILDAATENSLVLLDEVGRGTSTA 747 Query: 746 DGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKV 805 DGL+IA A EYLH+ L ATH H+LT ++ +L N + S + + F H++ Sbjct: 748 DGLAIARAVTEYLHDEVGAYTLFATHHHDLTAVAAALSGATNRHFETSREDGDVRFDHEL 807 Query: 806 IPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 PG A SYG++V +AG+P++V+ R+ D+L E Sbjct: 808 APGPAAASYGVEVASMAGVPDSVVERSRDLLADAE 842 >gi|300727541|ref|ZP_07060932.1| DNA mismatch repair protein MutS [Prevotella bryantii B14] gi|299775244|gb|EFI71845.1| DNA mismatch repair protein MutS [Prevotella bryantii B14] Length = 835 Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust. Identities = 280/860 (32%), Positives = 467/860 (54%), Gaps = 62/860 (7%) Query: 70 LTKR--GKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKK--RGNKSL 125 +T+R G + G+ + M G P H + Y+ KLI+ G R+AIC+Q+E P + ++ +G K L Sbjct: 1 MTRRNNGGNTGQ-MEMAGFPHHALDTYLPKLIRAGKRVAICDQLEDPKKKREALKGKKGL 59 Query: 126 ------VRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST 179 V+R + LVTPG +D +L+ ++N+L AV + I+++DISTG F Sbjct: 60 TEMDKMVKRGITELVTPGVALDDNVLNYKENNFLAAVHFGKNACGISFLDISTGEFLTGE 119 Query: 180 SNHD---RLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESR 236 +D +LI + M P+EI++ + +++ F T V + F + + Sbjct: 120 GTYDYVEKLIGNFM---PKEILYDRAK--KEDFERFFGT-KLVTFELDDWVFTEQTARQK 173 Query: 237 IADYYNITTVDTFGSFSQVEKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSA 295 + ++ + FG A+ AI Y++ TQ + I R + + + +D+ Sbjct: 174 LLKHFGTKNLKGFGVEHLKNGVIASGAIMQYLEITQHTHINHITSLSRIEEEKYVRMDNF 233 Query: 296 ARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFI 355 +LE++ + SLLK ID++IT GGR+ + PL I+ RL+ + +F Sbjct: 234 TIRSLELVSPMQ-EEGSSLLKVIDHTITPMGGRMLRRWVVFPLKSVKPIDERLNVVEYFF 292 Query: 356 QNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIR---DGIRSGINILNLFLKND 412 + P I L D+ R +S++ +GR P+++ +R D +R I L+ KN Sbjct: 293 REPEFRECIDDQLHRIGDLERIISKVAVGRVSPREVVQLRVALDALRP-IKTACLYAKN- 350 Query: 413 LPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSK 472 E+L+ E+L L +SL+ + + D P G + DG +A LDE RS+ + Sbjct: 351 --EDLKRIGEQLN-LCESLKNRIEQEIQPDPPQLVNKGDVIADGYNAELDELRSISRNGR 407 Query: 473 RIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNL 532 + +Q + E+T I +LK+ +NN GY++EV ++ + + +I +QT++ Sbjct: 408 DYLLKIQEQETEKTGISSLKVGYNNVFGYYLEVRNTYKDKVPAE------WIRKQTLAQA 461 Query: 533 TRFTTLELIDLENRITNATNSALLIELESFEIL---SNAIIEQSESLDNASQVIAIIDIS 589 R+ T EL + E +I A L +E + F L A I Q + NA+ +IA +D Sbjct: 462 ERYITQELKEYEEKILGADERILSLEAKLFSELIVDMQAFIPQIQI--NAN-LIAQLDCL 518 Query: 590 IALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNS 649 ++ A +++ +Y RP++D+S +K GRHP++E L + ++ ND L NDK Sbjct: 519 LSFAAISELNHYVRPVVDDSEIIDIKQGRHPVIETQLP--IGEQYVPNDVYLD--NDKQ- 573 Query: 650 GKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASG 709 ++ ++TGPNM GKS LRQ ALIV++AQ+G +VPA A IG+VDK+F+RVG++DN++ G Sbjct: 574 -QVMMITGPNMAGKSALLRQTALIVLLAQIGCFVPAEGARIGLVDKIFTRVGASDNISLG 632 Query: 710 RSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHE--TNRCRGL 767 STFMVEM E ++ILN T +S V+ DE+GRGT+T DG+SIAWA +EYLHE + R L Sbjct: 633 ESTFMVEMTEASNILNNVTPRSLVLFDELGRGTSTYDGISIAWAIVEYLHEHSSANARTL 692 Query: 768 LATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNT 827 ATH+HEL ++ K R N + V + + +IFL K+ G ++HS+GI V ++AG+P + Sbjct: 693 FATHYHELNEMEKLFSRIKNYNVSVKEVDGKVIFLRKLERGGSNHSFGIHVAEIAGMPKS 752 Query: 828 VISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNN------LSKNDKLFVE---KIK 878 ++ RA+ ILK E + N + P+++ S +D + + +I Sbjct: 753 IVKRAHVILKQLE---NENSNVGSVGRPQVEKIASTQQDVQLSFFQLDDPILCQVRDEIL 809 Query: 879 CLNLDEMSPLTALKTLYAVK 898 L+++ ++P+ AL L +K Sbjct: 810 GLDINNLTPVEALNKLNEIK 829 >gi|195973734|gb|ACG63432.1| DNA mismatch repair protein MutS [Francisella philomiragia] Length = 776 Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust. Identities = 276/805 (34%), Positives = 424/805 (52%), Gaps = 38/805 (4%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 D L+FYRMGDFYELFFDDA A+ L ITLT RGK G IPM GVP H A YI K++K Sbjct: 1 DILLFYRMGDFYELFFDDAKNAAELLDITLTARGKSNGDSIPMAGVPYHAAEGYIAKIVK 60 Query: 101 IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIR 160 G +AICEQI P +K V R V R++TP T++E+ L + L+++ Sbjct: 61 KGLSVAICEQIGDP-----STSKGPVERQVTRIITPATVSEEAFLDSNQDSILVSIYEKN 115 Query: 161 TEWAIAWIDISTGIFKI--STSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGN 218 ++ IA+ + G I + +N L + I+++ P+EII + L K++F Sbjct: 116 NKYHIAYTSYTQGKIHILNTVTNSSDLKNQILKLSPQEIITNSNSLVE---KNIFNK--P 170 Query: 219 VAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTI 278 V + + F + + + + N + + + + T + ++Y+ T I Sbjct: 171 VKLLEEWYFSNFEAKKHILNSFDNSFANNILNLYKKEQLTVIGSILAYLTNTLKSTPKHI 230 Query: 279 GYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPL 338 ++ Q+ L ID +R+NLE L + + SLL +D T G RL +P Sbjct: 231 SDILLDEDQNILNIDINSRNNLE----LDNNSKSSLLNIMDKCKTSLGSRLLRRYFKNPT 286 Query: 339 TDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 D KI+ R + I F Q+ + IQ IL D+ R +SR+ +G +PKD+ + + Sbjct: 287 RDLNKISLRHNVIKSFKQHHYFL-KIQDILSYINDIERIISRVALGTVKPKDLVSLNSSL 345 Query: 399 RSGINILNLFLKNDLPE--ELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDG 456 + +L + + E + + ++ +L + L K + ++ P RDGG ++ G Sbjct: 346 EQLPKLKSLLEEINTSEIININNHIHQIDELTKLLNKAIV----NNPPMTIRDGGVIKHG 401 Query: 457 ADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKD 516 D LDE R L+D S + + ++T I LK+ +N GY+IE++ A + + Sbjct: 402 FDQELDELRGLKDNSYDFLLKFETLQKQKTGINTLKVGYNRVHGYYIELSKQYADKVPTE 461 Query: 517 LESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESL 576 +I RQT+ R+ T EL E++I +A AL E ++ L N ++E + Sbjct: 462 ------YIRRQTLKASERYITDELKAFEDKILSAKEKALAREKLIYDTLLNKVLEYYSQI 515 Query: 577 DNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIA 636 + IA ID+ A A + N +P + + +K+ RH +E + + PFI Sbjct: 516 QQTAASIAKIDVLANFAERAIKLNLNQPKFNKAGKLDIKEARHLAIEHNIDE----PFIP 571 Query: 637 NDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKL 696 ND LS ++ L ++TGPNMGGKST++RQ A ++ +A +GS+VPASYA IG +D + Sbjct: 572 NDTLLST----DTYTLEIITGPNMGGKSTYMRQVAQLIFLAYIGSFVPASYADIGDIDTI 627 Query: 697 FSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIE 756 ++R+G++D+++SGRSTFMVEM ETA ILN AT +S VI+DEIGRGT+T DGLS+A A E Sbjct: 628 YTRIGASDDISSGRSTFMVEMTETAYILNNATKKSLVIMDEIGRGTSTFDGLSLAKACAE 687 Query: 757 YLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGI 816 + L ATH+ ELT+L N + + + I F+HK + G A SYGI Sbjct: 688 KFAKIGALT-LFATHYFELTELVNQYPNTKNIHFEAKEYKDNIYFMHKAVAGAAKKSYGI 746 Query: 817 QVGKLAGLPNTVISRAYDILKTFEK 841 QV KLAG+ V+ A L EK Sbjct: 747 QVAKLAGISKDVLESAKKNLANLEK 771 >gi|195973740|gb|ACG63435.1| DNA mismatch repair protein MutS [Francisella noatunensis subsp. orientalis] gi|225624837|gb|ACN96553.1| MutS [Francisella noatunensis subsp. orientalis] Length = 776 Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust. Identities = 279/807 (34%), Positives = 424/807 (52%), Gaps = 42/807 (5%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 D L+FYRMGDFYELFFDDA A L ITLT RGK G+ IPM GVP H A YI K++K Sbjct: 1 DILLFYRMGDFYELFFDDATNAVELLDITLTARGKSNGESIPMAGVPYHAAEGYIAKIVK 60 Query: 101 IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIR 160 G +AICEQI P +K V R V R++TP T++E+ L + L+++ Sbjct: 61 KGLSVAICEQIGDP-----STSKGPVERQVTRIITPATVSEEAFLDSNQDSILVSIYEKN 115 Query: 161 TEWAIAWIDISTGIFKISTSNHDRLISD----IMRIDPREIIFSEKELSHAEYKSLFETL 216 ++ IA+ + G KI N + +SD I+++ P+EII + L K++F Sbjct: 116 NKYHIAYTSYTQG--KIHLVNTMKNLSDLKNQILKLSPQEIITNSNNLIQ---KNIFNK- 169 Query: 217 GNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKP 276 V V + F + + + + N + S+ + + TA + ++Y+ T Sbjct: 170 -PVKVLEEWYFSNFEAKKHIVDTFDNSFANNILNSYKKEQLTAIGSILAYLTNTLKSIPK 228 Query: 277 TIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIAS 336 I ++ Q+ L IDS +R+NLE L + + SLL +D T G RL + Sbjct: 229 HISDIHLDEDQNILNIDSNSRNNLE----LDNNSKSSLLNIMDKCKTSLGSRLLRRYFKN 284 Query: 337 PLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRD 396 P D KI R + I + + +Q IL D+ R +SR+ +G +PKD+ Sbjct: 285 PTRDLNKIAFRHNVIKALKEQHHFL-KVQDILSYINDIERIISRVALGTVKPKDLVSFNS 343 Query: 397 GIRSGINILNLFLKNDLPE--ELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLR 454 + + NL + + E + + ++ +L + L K + D+ P RDGG ++ Sbjct: 344 SLEQLPKLKNLLKEINTSEIININNHIHQIDELTELLNKAIV----DNPPVTIRDGGAIK 399 Query: 455 DGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLK 514 G D LDE R L+D S + + ++ I LK+ +N GY+IE++ A + Sbjct: 400 HGFDQELDELRGLKDNSYDFLLKFETLQKQKIGINTLKVGYNRVHGYYIELSKQYADKVP 459 Query: 515 KDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSE 574 + +I RQT+ R+ T EL E++I +A AL E +++L N ++E Sbjct: 460 AE------YIRRQTLKASERYITNELKAFEDKILSAKEKALAREKLIYDVLLNKVLEYYS 513 Query: 575 SLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPF 634 + + IA ID+ A A + N +P + + +K+ RH +E+ + + PF Sbjct: 514 QIQQTAASIAKIDVLANFAERAIKLNLNQPKFNKTGKLDIKEVRHLAIEQNIDE----PF 569 Query: 635 IANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVD 694 I ND LS ++ L ++TGPNMGGKST++RQ A ++ +A +GSYVPA+YA I +D Sbjct: 570 IPNDTLLST----DTYTLEIITGPNMGGKSTYMRQVAQLIFLAYIGSYVPANYADICDID 625 Query: 695 KLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWAT 754 +++R+G++D+++SGRSTFMVEM ETA ILN AT +S VI+DEIGRGT+T DGLS+A A Sbjct: 626 TIYTRIGASDDISSGRSTFMVEMTETAYILNNATQKSLVIMDEIGRGTSTFDGLSLAKAC 685 Query: 755 IEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSY 814 E + L ATH+ ELT+L N + + + I F+HK + G A SY Sbjct: 686 AEKFAKIGALT-LFATHYFELTELVNQYPNTKNIHFEAKEYKDNIYFMHKAVAGAAKKSY 744 Query: 815 GIQVGKLAGLPNTVISRAYDILKTFEK 841 GIQV KLAG+ V+ A L EK Sbjct: 745 GIQVAKLAGISKDVLESAKKNLANLEK 771 >gi|260435739|ref|ZP_05789709.1| DNA mismatch repair protein MutS [Synechococcus sp. WH 8109] gi|260413613|gb|EEX06909.1| DNA mismatch repair protein MutS [Synechococcus sp. WH 8109] Length = 901 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 279/828 (33%), Positives = 445/828 (53%), Gaps = 42/828 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TPM+R Y+E+K+ +PD ++ YR+GDF+E FF+DA+ SR L +TLT + GK +G+ +PM Sbjct: 94 TPMLRHYVELKAAHPDRVLLYRLGDFFECFFEDAIELSRVLELTLTGKEGGKAIGR-VPM 152 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G+P H A Y +LIK G+ +A+C+Q+E+ +G +L++R++ R++TPGT+ E+ Sbjct: 153 AGIPHHAAERYCAELIKQGYSVALCDQLET---TPTKG--ALLKRDITRVLTPGTVLEEG 207 Query: 144 LLSPTDSNYLMAV------ARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPRE 196 +LS +N+L AV + W +A D+STG ++ + L + + + E Sbjct: 208 MLSARRNNWLAAVVVEPAQGKQPLRWGLASADVSTGEVQVMQREDSFALHQQLAQQEASE 267 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 ++++ L E L A + F +E + +Y ++++D G + Sbjct: 268 LLWAAA-LDAERPAWCPERLRLTPTA--STPFSPVEAERTLQQHYGLSSLDGLGLPEHPL 324 Query: 256 EKTAAAAAISYIKKTQMVNKPT---IGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 A + Y++ TQ + + + + P L +D+ R NLE+ T ++ Q Sbjct: 325 ALQALGGLLRYLQDTQPLEQDSRIPLEVPAIVHRGDALVLDAQTRRNLELTATQRDNQLQ 384 Query: 313 -SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 SLL ID ++T GGR + +PL + I R D ++ + L I+++L+ Sbjct: 385 GSLLWAIDRTLTAMGGRCLRRWLEAPLMERQAIQQRQDLVSSLVGERNLRMAIRQLLRPM 444 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDL---PEELRGAVEKLKKLP 428 D+ R R G +D+ I DG+ + L L + + PE L+ + L Sbjct: 445 GDLERLAGRAGAGHAGARDLVAIADGLER-LPQLTARLDSAISAGPEWLQQLLSPDPALA 503 Query: 429 QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 + L +T+ L P +G + DG D LD R+ D + ++ + + + + I Sbjct: 504 E-LARTIRHKLVQAPPLSLSEGDLIHDGVDPLLDGLRNQLDDQEAWLSHQEQQERQRSGI 562 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 LK++H+ GYF+ V+ + A+ + D +I RQT++N RF T +L + E RI Sbjct: 563 STLKLQHHRTFGYFLAVSKAKANAVP------DHWIRRQTLANEERFITPDLKEREGRIF 616 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 A E E F L + + + + A++ +A +D LA +A YC P I + Sbjct: 617 QLRARACQREYELFCQLRDQVGAMAAPIRQAARAVAALDALTGLADVAASGGYCAPTITD 676 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 +K RHP+VE+ L + K F ND L D L +LTGPN GKS +LR Sbjct: 677 GRGLQLKASRHPVVEQRLVE---KAFTPNDVQLGEGTD-----LVVLTGPNASGKSCYLR 728 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q LI +MAQ+GS+VPA A +GI D++F+RVG+ D+LA+G+STFMVEM ETA+IL+ A+ Sbjct: 729 QIGLIQLMAQIGSWVPARSATVGIADRIFTRVGAVDDLAAGQSTFMVEMAETANILHHAS 788 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA 788 +S V+LDEIGRGTAT DGLSIAWA E+L R + ATH+HEL +L+ N Sbjct: 789 ERSLVLLDEIGRGTATFDGLSIAWAVSEHLAGDLGSRTVFATHYHELNNLASERDNVANF 848 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 + V ++ E ++FLH+V G A SYGI+ +LAG+P TV+ A +L Sbjct: 849 QVLVEETGEDLVFLHQVQAGGASRSYGIEAARLAGVPKTVVQGARQVL 896 >gi|206602192|gb|EDZ38674.1| DNA mismatch repair protein (MutS) [Leptospirillum sp. Group II '5-way CG'] Length = 843 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 277/834 (33%), Positives = 430/834 (51%), Gaps = 64/834 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ RQY + S +SL+ +R+GDFYELF + A SR LG+TLT R ++ +PMCG Sbjct: 16 TPLFRQYQSLLSEVENSLLLFRLGDFYELFGEQAETVSRVLGLTLTTRDRNRPNPLPMCG 75 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P + + Y+ +L+ G +AI EQ+ A++ + L R +VR+VT TL ED L Sbjct: 76 IPARSLDLYLPRLVYEGFSVAIAEQV-----AQQGDTEGLFPRQIVRVVTRATLIEDPSL 130 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG---IFKISTSNHDRLISD-----IMRIDPREI 197 S +AVA W+ A +D++ G +F+ S L+ D + R +P E+ Sbjct: 131 SGGSMKNALAVAGEGGRWSGACLDLTDGTLSVFEPEDSPPSDLLPDPLVDWVSRKNPEEV 190 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 + E SL + + VA S+ + + + GSF E Sbjct: 191 L--------VEDSSLLSSFEHFQVA--------SVKREQREGWRDFLP----GSFRMPEL 230 Query: 258 T-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 A + + Y+ Q P + E+ L +D RS L L E+ Sbjct: 231 APQSLKALSMLVGYVAWHQKSILPHLTGVVLENDSGNLVLD---RSTLRHLDLFPSGEEK 287 Query: 313 ----SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKIL 368 SL + +D + T G R + SP +I R ++F +P + L Sbjct: 288 KKPGSLYEVLDRARTAMGSRTLRRWLLSPDATGARIAVRHAVQSYFSGHPRFFDETVSQL 347 Query: 369 KSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI-LNLFLKNDLPEELRGAVEKLKKL 427 K+ D+ R L R+ + P+DIA IRD + + I L ++ P L A+ L L Sbjct: 348 KNVGDLERMLGRVGLKGRVPRDIAGIRDSLEWSMEIALRPEWQDFFPHFLSAAL--LSDL 405 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 L L L ++ +G + D D+ L RSL + + +L+ + E+T Sbjct: 406 -SGLRDLLKEALVEEPAVIIGEGPVISDAFDSELRRLRSLEQAGDQELLALENQEKEQTG 464 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 I+NL++++N GYFIE++ +KK + + +Q ++N+ RFT ELI E+RI Sbjct: 465 IENLRVRYNQVSGYFIEISKGQ---VKK---VPEHYFRKQILTNVERFTIPELISFEDRI 518 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 A + LL E E + L + I+EQ+E+L S+ + ID A + K YC P I Sbjct: 519 QQARQAVLLREGELLDSLRSRILEQAENLQILSRFLGEIDALHAFHHVGKTFGYCLPEIT 578 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 + + GRHP++E+ + S F+ ND D+ G+ +LTGPNM GKST++ Sbjct: 579 TEGSLQIFGGRHPVLERRIPPAS---FVPNDVDV------GQGEFLILTGPNMAGKSTYM 629 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 R ALI IMAQ GS VPA A + + D++ +RVG++D++ G STFMVEM E + ILN+A Sbjct: 630 RMIALIQIMAQAGSPVPADRARVPLADRILTRVGASDHILEGESTFMVEMTEMSRILNEA 689 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 + +S V+LDE+GRGT+T DG+++AW+ E++H+ RCR L ATH+HEL L+ R N Sbjct: 690 SPRSIVLLDEVGRGTSTFDGMALAWSISEFIHDRIRCRTLFATHYHELHQLAAKRSRVRN 749 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 + V+ + IIF H++ PG SYG+ V +LAG+P V+ RA+DIL+ ++K Sbjct: 750 LHVSVAVRDRKIIFHHRISPGHTSRSYGVDVARLAGIPEVVVERAFDILRFWDK 803 >gi|206895176|ref|YP_002247408.1| DNA mismatch repair protein MutS [Coprothermobacter proteolyticus DSM 5265] gi|206737793|gb|ACI16871.1| DNA mismatch repair protein MutS [Coprothermobacter proteolyticus DSM 5265] Length = 778 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 274/843 (32%), Positives = 451/843 (53%), Gaps = 86/843 (10%) Query: 26 TPMMRQYIEIK-SINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 TPM QY E+K + D L+ +R+GDFYE F+DDA+ AS L I LT R G +PMC Sbjct: 7 TPMAAQYWELKREVGNDILLAFRLGDFYEFFYDDAVKASEVLQIVLTSREFGKGNKVPMC 66 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP H Y+ +L+ G ++A+CEQ+E P R K LV+R+++R+ TP T E Sbjct: 67 GVPHHAFESYVSRLVSEGFKVAVCEQMEDP-----RKAKGLVKRDIIRIYTPSTFVEG-- 119 Query: 145 LSPTDSNYLMAVARIRTE-WAIAWIDISTGIF---KISTSNHDRLISD-IMRIDPREIIF 199 T + +A+ R++ + + + ++D+STG F KI + + D PRE++ Sbjct: 120 ---TQEHVWLAILRVKHQMFELLFLDVSTGDFMLEKIPVTEGTNTVEDYFYTFMPRELLV 176 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 H K L E L N+ V T VD S ++ K Sbjct: 177 PNTSADHPLIKKLLEKLYNLVV----------------------TVVDDAPSLEEIGK-- 212 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEIL-RTLSGSREQSLLKTI 318 Y+ + + + + E++ IQ I A LE++ ++ S++ SLL+ + Sbjct: 213 -----RYLMELKASPELHLRSEEQDHIQ----IPPEAVRALELVYNPVTNSKKGSLLELL 263 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D ++T G R R+ +P ++ KIN+ LD + FF+ +P ++ ++ L+ D+ R Sbjct: 264 DSTLTAMGHRELYRRLIAPWSNIEKINSHLDLVEFFVMHPSVLEDVRVKLRGIADLERIC 323 Query: 379 SRLKIGRG-EPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 S ++ G + K + I++G++ +L+ +++ + + + L+ L +SL + Sbjct: 324 SVIQEGSNVKVKHLLDIKEGLQRYEQLLSSQVRDLVSKSVSDVSNVLELLNESLTGVDAE 383 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 + S D+ ++ DA E S +S++ +A + E T IKNLK+ +N+ Sbjct: 384 IGSGDV---------IKPDWDADFGELLSFARESQKWLAEFESTEKERTGIKNLKVGYND 434 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+IEV S + KD+ ++ RQT+ N RF T EL++ E+R+ +A + Sbjct: 435 TFGYYIEVPKSRS----KDVPP--YYMKRQTLVNAERFVTKELLEFESRVQDAYSRIEEK 488 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E E F L + + L A++ IA +D++ +L++ A++ + +P I +K+G Sbjct: 489 EKELFAELVKKLADSLSYLRRAAEWIAYVDVAASLSLAARKMGWTKPQIVPERILRIKNG 548 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 +HP+VE S PF+ N +L S + L+TGPNM GKSTFLRQ A+IV++A Sbjct: 549 KHPVVE----WYSDVPFVPNSVELD-----GSVRTALVTGPNMAGKSTFLRQTAIIVLLA 599 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 MGS+VPA A + + K+F+R+G+AD + GRSTFMVEM + A IL ++ S V++DE Sbjct: 600 HMGSFVPAQEAVVPLTKKIFARMGAADEIIYGRSTFMVEMTQIARILRESDEYSLVVMDE 659 Query: 738 IGRGTATLDGLSIAWATIEYLH-ETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 +GRGTA DGL+IAWA I+ L ++ L++TH+ E+ +LS L A QV+++ Sbjct: 660 VGRGTAVADGLAIAWAVIKELSMRKHKPFALISTHYPEIAELSADLPVLFLAA-QVAETE 718 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN------QKDM 850 EG+ FL+++ G++D +YG++V LAG+P V+S A K F+KL + K M Sbjct: 719 EGLTFLYRIEQGVSDKAYGLEVAALAGVPPNVLSEAS---KVFQKLSSQDLFQKPEAKQM 775 Query: 851 RLY 853 RL+ Sbjct: 776 RLF 778 >gi|33864614|ref|NP_896173.1| DNA mismatch repair protein MutS [Synechococcus sp. WH 8102] gi|44888171|sp|Q7UA23|MUTS_SYNPX RecName: Full=DNA mismatch repair protein mutS gi|33632137|emb|CAE06593.1| putative DNA mismatch repair protein [Synechococcus sp. WH 8102] Length = 900 Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust. Identities = 284/850 (33%), Positives = 451/850 (53%), Gaps = 48/850 (5%) Query: 8 PQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLG 67 P + Q+D ++ TPM+R Y+E+K+ +P+ ++ YR+GDF+E FF+DA+ SR L Sbjct: 79 PAWAHHSQVDPQQ----LTPMLRHYVELKAAHPERVLLYRLGDFFECFFEDAITLSRLLE 134 Query: 68 ITLTKR--GKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSL 125 +TLT + GK +G+ +PM G+P H A Y +LI+ G +A+C+Q+E+ +L Sbjct: 135 LTLTGKEGGKAVGR-VPMAGIPHHAAERYCGELIRRGFSVALCDQLET-----TPAKGAL 188 Query: 126 VRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVA---RIRTE---WAIAWIDISTGIFKI-S 178 ++R++ R++TPGT+ E+ +LS +N+L AV R E W +A D+STG ++ Sbjct: 189 LKRDITRVLTPGTVLEEGMLSSRRNNWLAAVVIEPAHRDEPFRWGLASADVSTGEVQVMQ 248 Query: 179 TSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIA 238 + D L + ++ E++ S E + A L +VA + F +E+ + Sbjct: 249 RQDSDALHQQLAQLGAAELLSSTPESNPAWCPDQLR-LTSVA----STPFSRPAAEAALL 303 Query: 239 DYYNITTVDTFGSFS-QVEKTAAAAAISYIKKTQMVNKPT---IGYPEREDIQSTLFIDS 294 +Y + +D G + A ++Y++ TQ + + + P L +D+ Sbjct: 304 RHYKLANLDGLGLPELPLALRAMGGLLAYLRDTQPLEENASVPLEVPAIVQRGDALVLDA 363 Query: 295 AARSNLEILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINF 353 R NLE+ T GS + SLL ID ++T GGR + +PL D I R ++ Sbjct: 364 QTRRNLELTATQRDGSLQGSLLWAIDRTLTAMGGRCLRRWLEAPLMDLDAIRQRQQLVST 423 Query: 354 FIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDL 413 ++ L ++++L+ D+ R R G +D+ I DG+ + L L+ + Sbjct: 424 LVEQRNLRQALRRLLRPMGDLERLAGRAGAGHAGARDLVAIADGLER-LPQLAARLEGTI 482 Query: 414 ---PEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQ 470 P+ L ++ L Q L ++ L + P +GG + DG D LD R+ D Sbjct: 483 IRGPDWLDDLLQPDPAL-QDLASSIRHTLLESPPLSLSEGGLIHDGVDPLLDGLRNQLDD 541 Query: 471 SKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMS 530 ++ + + + + NL+++++ GYF+ V+ + AS + D +I RQT++ Sbjct: 542 QDAWLSQQEKQERQRSGNSNLRLQYHRTFGYFLAVSKAKASAVP------DHWIRRQTLA 595 Query: 531 NLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISI 590 N RF T L + E RI A E E F L + + S+ A++ +A +D Sbjct: 596 NEERFITPALKEREGRIFQLRARACQREYELFCTLREQVGALAASIRRAARAVAGLDALT 655 Query: 591 ALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSG 650 LA A YC P + + + RHP+VE+ L + F AND L D Sbjct: 656 GLADTAASGAYCAPELVEGRALSLSEARHPVVEQLLVETR---FTANDVHLGSGTD---- 708 Query: 651 KLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGR 710 L +LTGPN GKS +LRQ LI ++AQ+GS+VPA+ A IGI D++F+RVG+ D+LA+G+ Sbjct: 709 -LVVLTGPNASGKSCYLRQIGLIQLLAQIGSWVPAAKARIGIADRIFTRVGAVDDLAAGQ 767 Query: 711 STFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLAT 770 STFMVEM ETA+IL+ AT S V+LDEIGRGTAT DGLSIAWA E+L R R + AT Sbjct: 768 STFMVEMAETANILHHATELSLVLLDEIGRGTATFDGLSIAWAVSEHLAGDLRARTVFAT 827 Query: 771 HFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVIS 830 H+HEL +L+ N + V ++ + ++FLH+V G A SYGI+ +LAG+P V+ Sbjct: 828 HYHELNNLANERANVANFQVLVEETGDDLLFLHRVSQGGASRSYGIEAARLAGVPTPVVQ 887 Query: 831 RAYDILKTFE 840 RA +L E Sbjct: 888 RARQVLDQIE 897 >gi|224542100|ref|ZP_03682639.1| hypothetical protein CATMIT_01275 [Catenibacterium mitsuokai DSM 15897] gi|224525033|gb|EEF94138.1| hypothetical protein CATMIT_01275 [Catenibacterium mitsuokai DSM 15897] Length = 804 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 278/860 (32%), Positives = 465/860 (54%), Gaps = 65/860 (7%) Query: 45 FYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHR 104 YR+GDFYE+FFDDA +AS+ L + LT + + + +PMCGVP H A Y+++L+K GH+ Sbjct: 1 MYRIGDFYEMFFDDAAVASKALNLALTGKNAGVKERVPMCGVPFHAATGYVEELVKQGHK 60 Query: 105 IAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWA 164 + I EQ+ P K +G LV R VV++VTPGTL D L+ +N++ A+ + Sbjct: 61 VVIVEQLSDP---KAKG---LVERGVVQIVTPGTLM-DFKLNEKVNNFIGALGVFDFSYT 113 Query: 165 IAWIDISTGIFK-ISTSNHDRLISD-IMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA 222 +A+ D+STG F ++ + L+ + I + +EI+ + +S + V ++ Sbjct: 114 LAYADLSTGEFYCLNLEKKEHLLRNKIESLGIKEIVVEDDSIS----------IDGVMMS 163 Query: 223 QPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQ---MVNKPTIG 279 F D +I ++ + NI Q++ A ++Y+ TQ + TI Sbjct: 164 S---FKDETIKDNYKKIFENIN------DLKQIK--ICANLLNYLLDTQKRELEYIQTIV 212 Query: 280 YPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLT 339 ++ED ++++SA + LE+ + + + +LL +D++ + GGRL + I PL Sbjct: 213 EVKQED---YVYMESATKKALELTKNANNEKYGTLLWLLDHTHSAMGGRLLKQWIDQPLI 269 Query: 340 DSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIR 399 KI RLD + F+ N + I ++ D+ + SR+ G +D+ I ++ Sbjct: 270 SKEKIEERLDLVEVFMDNFLERETIIDMINDIYDIEKLASRVAFGNVNARDLKWICSSLK 329 Query: 400 SGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADA 459 + L D P+ A++ + P + +T+ + DD P ++G ++DG + Sbjct: 330 VIPELKYQLLSLDHPQLNNLAMQLVDLSP--IIQTIDEAIVDDPPLVIKEGNIIKDGYNK 387 Query: 460 SLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLES 519 LDE R +R K+ + + + K E T IK LK+ +N GY+IEVT S ++K + Sbjct: 388 ELDELRDIRKNGKKWLMAFEEKEKERTGIKGLKVGYNRVFGYYIEVTKSYLPLVKDEF-- 445 Query: 520 KDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNA 579 + +Q++SN RF T EL D+EN+I +A + + +E E F + I + + Sbjct: 446 --NYTRKQSLSNAERFITPELKDMENKILSAQDRIVALEYEIFTQVRQYIKGFVHEIQDV 503 Query: 580 SQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDC 639 ++V+A +D+ + A+++ +Y RP+ ++ ++ GRHP+VE+ + +++ ++ ND Sbjct: 504 AKVVAKVDVFTSFALVSGRNDYVRPVFNDEHIIHIEAGRHPVVEEVISKEN---YVKNDV 560 Query: 640 DLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSR 699 L K+ L+TGPNMGGKST++RQ AL +IMAQ+G +VPA A + + D +F+R Sbjct: 561 SLG-----EDAKIMLITGPNMGGKSTYMRQMALTMIMAQIGCFVPARSAVLPVFDAIFTR 615 Query: 700 VGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLH 759 +G++D+L G+STFMVEM+E + L A+ S +I DEIGRGTAT DG+++A +EY+ Sbjct: 616 IGASDDLIGGQSTFMVEMLEANNALKYASENSLIIFDEIGRGTATFDGMALAQGILEYIA 675 Query: 760 ETNRCRGLLATHFHELTDL-SKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQV 818 N +TH+HELT + S+K H SN+ I FL+ + G + SYGI V Sbjct: 676 NHNHSLTFFSTHYHELTRMEGASIKNVHAGA---DISNDSIRFLYHIEDGPSGQSYGINV 732 Query: 819 GKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIK 878 KLA LP VI RA ILK+ E +N + +L E+Q+ + + E +K Sbjct: 733 AKLAKLPEQVIVRADAILKSLE----NNNIEEKLQNIEVQSVVKTSAVE-------ETLK 781 Query: 879 CLNLDEMSPLTALKTLYAVK 898 ++ +SPL AL TL +K Sbjct: 782 GIDPMSLSPLDALSTLIELK 801 >gi|284165652|ref|YP_003403931.1| DNA mismatch repair protein MutS [Haloterrigena turkmenica DSM 5511] gi|284015307|gb|ADB61258.1| DNA mismatch repair protein MutS [Haloterrigena turkmenica DSM 5511] Length = 893 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 278/910 (30%), Positives = 464/910 (50%), Gaps = 67/910 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY ++ + D++V +++GDFYE F A +R L I LT R G+ PM G Sbjct: 9 TPMMAQYHDLCARYDDAIVLFQVGDFYETFCGAAERTARLLEIALTSREDSTGE-YPMAG 67 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P+ A YI++L++ G+R+A+ +Q+E P E +V R V R++TPGTLTED+LL Sbjct: 68 IPIDNAESYIEELLEAGYRVAVADQVEEPGE-----TSGVVERAVTRVITPGTLTEDELL 122 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISD-IMRIDPREIIFSEKEL 204 + D+N++ A+AR +A +D+STG F +++ I+D I R DP E + Sbjct: 123 ASDDNNFVAAIAREGERLGLALLDVSTGDFYATSATAPESIADEISRFDPSEAVVGPDAP 182 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYY-----------NITTVDTFGSFS 253 ++ T + FD + ++A Y+ I +++ Sbjct: 183 ANPVPDDCMVTPFDARA------FDRERAADKLAAYFRNPDALLAGDAEIRACGALLAYA 236 Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPE----------REDIQSTLFIDSAARSNLEIL 303 + + + V G E R D + L +D+ A +LE+ Sbjct: 237 EYVRGGEHEGERGESDEERVEAVFEGDAEQRLEYITQLTRYDPREYLLLDAVALRSLELF 296 Query: 304 --RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILI 361 RT+ G + +L+ +D + + GGR + I PL + +I R D++ Sbjct: 297 EPRTVHGRDDATLVGVLDETASALGGRKLRDWIRRPLLEPARIEARHDAVAELKSAVQTR 356 Query: 362 NPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAV 421 + L+ D+ R + R+ R +D+ +RD + I D E LR Sbjct: 357 ERLHDRLREVYDLERLIGRISRERANARDLRSLRDTLAVVPEIREQLADADC-ERLRELR 415 Query: 422 EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLK 481 E L L E +++++ P +GG + +G D +LD+ R K+ I L+ + Sbjct: 416 ENLDPLTDVRELIEDAVVAEP-PIEITEGGIIAEGYDENLDDLRGTARDGKQWIDDLEER 474 Query: 482 YAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELI 541 E T I +LK+ HN+ GY+IEVT+ + + ++ + RQT+ N RF T +L Sbjct: 475 ERERTGIGSLKVGHNSVHGYYIEVTNPNLDSVPEN------YQRRQTLKNSERFVTPKLK 528 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 + E+ I A A E E F + + I + E + + IA +D ++LA +A + +Y Sbjct: 529 EREDEIVGAQQRADEREYELFCAVRSEIAAEVERVQGLADAIATLDALVSLATVAAQYDY 588 Query: 602 CRPII-----DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLT 656 CRP + ++ GRHP+VE+T Q+S F+ ND +L+ +D+ +L ++T Sbjct: 589 CRPEMLERDDHEGLEIDIEGGRHPVVERT--QES---FVPNDANLT--HDR---RLAVIT 638 Query: 657 GPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVE 716 GPNM GKST++RQ A IV++AQ+GS+VPA A + VD++F+RVG++D++A GRSTFMVE Sbjct: 639 GPNMSGKSTYMRQVAQIVLLAQVGSFVPARSARLTPVDRIFTRVGASDDIAGGRSTFMVE 698 Query: 717 MIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELT 776 M E A+IL +A +S V+LDE+GRGT+T DG++IA A E++H+ L ATH H LT Sbjct: 699 MDELATILREADERSLVLLDEVGRGTSTADGMAIAQAITEHVHDRVGATTLFATHHHPLT 758 Query: 777 DLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 +L+ L+ +V + + ++F H++ PG A SYG++V AG+P TV+ R+ +++ Sbjct: 759 ELADDLEAAFTLHFEVDEDDGEVVFHHEIAPGAATGSYGVEVATAAGVPETVVERSRELV 818 Query: 837 --------KTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPL 888 + E+ D + E + + + +++ L+L ++P+ Sbjct: 819 AEAAGDDGEPIEEGEDAGDADAPVEPTEDEVAAATADGGDIPTDVAAELRALDLAHLTPV 878 Query: 889 TALKTLYAVK 898 AL L +K Sbjct: 879 EALTELDRLK 888 >gi|78211633|ref|YP_380412.1| DNA mismatch repair protein [Synechococcus sp. CC9605] gi|123579019|sp|Q3ANH5|MUTS_SYNSC RecName: Full=DNA mismatch repair protein mutS gi|78196092|gb|ABB33857.1| DNA mismatch repair protein MutS [Synechococcus sp. CC9605] Length = 903 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 277/828 (33%), Positives = 446/828 (53%), Gaps = 42/828 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TPM+R Y+E+K+ +P+ ++ YR+GDF+E FF+DA+ SR L +TLT + GK +G+ +PM Sbjct: 96 TPMLRHYVELKAAHPERVLLYRLGDFFECFFEDAIELSRVLELTLTGKEGGKAIGR-VPM 154 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G+P H A Y +LIK G+ +A+C+Q+E+ +G +L++R++ R++TPGT+ E+ Sbjct: 155 AGIPHHAAERYCAELIKQGYSVALCDQLET---TPTKG--ALLKRDITRVLTPGTVLEEG 209 Query: 144 LLSPTDSNYLMAV------ARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPRE 196 +LS +N+L AV + W +A D+STG ++ + L + + + E Sbjct: 210 MLSARRNNWLAAVVVEPAQGKQPLRWGLASADVSTGEVQVMQREDSSALHQQLAQQEASE 269 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 ++++ L E L +A + F +E + +Y ++++D G + Sbjct: 270 LLWAAA-LDTERPAWCPERLRLTPMA--STPFSPVEAERTLQQHYGLSSLDGLGLPEHPL 326 Query: 256 EKTAAAAAISYIKKTQMVNKPT---IGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 A + Y++ TQ + + + + P L +D+ R NLE+ T ++ Q Sbjct: 327 ALQALGGLLGYLQDTQPLEEDSRIPLEVPAIVHRGDALVLDAQTRRNLELTATQRDNQLQ 386 Query: 313 -SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 SLL ID ++T GGR + +PL D I R D ++ + L I+++L+ Sbjct: 387 GSLLWAIDRTLTAMGGRCLRRWLEAPLMDRQAIQQRQDLVSSLVGERSLRLAIRQLLRPM 446 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDL---PEELRGAVEKLKKLP 428 D+ R R G +D+ I DG+ + L LK+ + PE L+ + L Sbjct: 447 GDLERLAGRAGAGHAGARDLVAIADGLER-LPQLTARLKSAISTGPEWLQQLLSPDPALA 505 Query: 429 QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 + L +T+ L + P +G + DG D LD R+ D ++ + + + I Sbjct: 506 E-LARTIRHKLVEAPPLSLSEGDLIHDGVDPLLDGLRNQLDDQDAWLSHQEQQERQRCGI 564 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 LK++H+ GYF+ V+ + A+ + + +I RQT++N RF T +L + E RI Sbjct: 565 STLKLQHHRTFGYFLAVSKAKATAVP------EHWIRRQTLANEERFITPDLKEREGRIF 618 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 A E E F L + + + A++ +A +D L +A YC P I + Sbjct: 619 QLRARACQREYELFCQLREQVGAMAAPIRQAARAVAALDALTGLGDVAASGGYCAPTITD 678 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 ++D RHP+VE+ L + + F ND L D L +LTGPN GKS +LR Sbjct: 679 GRGLQLEDSRHPVVEQRLVETA---FTPNDVQLGEGTD-----LVVLTGPNASGKSCYLR 730 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q LI +MAQ+GS+VPA A +GI D++F+RVG+ D+LA+G+STFMVEM ETA+IL+ A+ Sbjct: 731 QIGLIQLMAQIGSWVPARSATVGIADRIFTRVGAVDDLAAGQSTFMVEMAETANILHHAS 790 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA 788 ++S V+LDEIGRGTAT DGLSIAWA E+L R + ATH+HEL +L+ N Sbjct: 791 DRSLVLLDEIGRGTATFDGLSIAWAVSEHLAGDLGSRTVFATHYHELNNLAAERDNVANF 850 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 + V ++ E ++FLH+V G A SYGI+ +LAG+P V+ RA +L Sbjct: 851 QVLVEETGEDLVFLHQVQAGGASRSYGIEAARLAGVPKPVVQRARQVL 898 >gi|219850607|ref|YP_002465040.1| DNA mismatch repair protein MutS [Chloroflexus aggregans DSM 9485] gi|219544866|gb|ACL26604.1| DNA mismatch repair protein MutS [Chloroflexus aggregans DSM 9485] Length = 968 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 308/968 (31%), Positives = 483/968 (49%), Gaps = 123/968 (12%) Query: 30 RQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR----GKHLGKD----- 80 RQY ++K D+++ +R GDFYE F DDA L + L +TLT++ K KD Sbjct: 11 RQYRKLKEEAADAILLFRFGDFYETFDDDAKLIAELLDVTLTRKEYAVDKRAPKDQQKLY 70 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIE-------------------SPLEAKKRG 121 PM G+P H + Y+ +L+ G+R+AI EQ+ +PLE+ + Sbjct: 71 APMAGMPYHAVDRYVSELVARGYRVAIAEQLSETEAMRNDTRPRSVYAAGLTPLESSGK- 129 Query: 122 NKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFK----I 177 +V+R +VR++TPGT+ + +L +NYL AV + + +A+ D+STG F + Sbjct: 130 ---MVQRAIVRIITPGTVIDPAMLPDRTNNYLAAVLVEQGKVGLAYADLSTGEFAAAEFV 186 Query: 178 STSNHDRLISDIMRIDPREIIFSEKE-----------------------------LSHAE 208 +L +++ R+ P E++ + E L H Sbjct: 187 DARALTQLQAELARLRPAEVLVPDDEALRLPNLAPVQARLSQDLAPLTKEEREVLLPHER 246 Query: 209 YKSLFETLGNVAVAQ------PNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 + G + Q P ++ + + S + + + T+ G + T AA Sbjct: 247 VARRLDAPGAASWTQGHVTEWPTWRWELATAASALCEQLAVATLAVCGLEDRPLATRAAG 306 Query: 263 A-ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR--EQSLLKTID 319 A I Y + TQ + Y + + +D R NLE+L + SG + + SL+ +D Sbjct: 307 ALIQYAQTTQRQRVNQLRYLRVYQTGAYMLLDPQTRRNLELLES-SGRQGAKASLIGVLD 365 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL IA PL + R ++ + + +++ L PD+ R+L+ Sbjct: 366 RTCTAMGARLLRRWIAQPLIVLEPLQVRQHAVARLVAETMTRLELREALAELPDMERALN 425 Query: 380 RLK--IGRGEPKDIAVIRDGIRS--GI-NILNLFLKNDLPEELRGAVEKLKKL-PQS-LE 432 R+ I P+D+ +R +R GI + L + L E+ G E L P S + Sbjct: 426 RIAQGIAVATPRDMVQLRAALRKLPGIAQAIAPLLPDLLAPEMDG--EPLLTFDPCSDVL 483 Query: 433 KTLSSMLSDDLPTF---------KRDGG-----FLRDGADASLDETRSLRDQSKRIIASL 478 L L DD P +GG +R G D LD ++ I L Sbjct: 484 DLLERALDDDPPALLGSSNYLRAAEEGGERPRRVIRPGFDQRLDALIKASRHAQEFIDRL 543 Query: 479 QLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTL 538 + K E T I++LK+ +N GY+IE+ S +V K + S + +QT+ N R+ T Sbjct: 544 ETKERERTGIRSLKVGYNQVFGYYIEI---SRAVDPKLIPSH--YERKQTLVNAERYVTE 598 Query: 539 ELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKE 598 EL E +++A + +E + F+ L + I + + L +A +D ALA +A Sbjct: 599 ELKYYEGLLSDARLKLVDLERDIFQRLCDDIQQHLDRLRITVAAVARLDALAALAEVAVR 658 Query: 599 QNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGP 658 Y +P + +K GRHP+VE+TL +PFI ND DL D ++ ++ ++TGP Sbjct: 659 GRYVQPTLRTDRVLRIKQGRHPVVERTL----GEPFIGNDVDL----DGDNVQILIITGP 710 Query: 659 NMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMI 718 NM GKSTFLRQ ALI +MAQ+GS+VPA A IG+VD++F+R+G+ D++A+G+STFMVEM Sbjct: 711 NMAGKSTFLRQVALITLMAQIGSFVPADEAEIGLVDRIFTRIGAQDDIATGQSTFMVEMT 770 Query: 719 ETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELT 776 ETA++L Q+T +S +ILDE+GRGT+T DG++IA A +EY+H R CR L ATH+HELT Sbjct: 771 ETAALLMQSTPRSLIILDEVGRGTSTYDGMAIARAVVEYIHNEPRLGCRTLFATHYHELT 830 Query: 777 DLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 L L R N + + + ++FLH++ PG AD SYGI V +LAG+P +VI RA D+L Sbjct: 831 ALDTELPRVRNFHMAAVERDGRVVFLHELRPGGADRSYGIHVAELAGIPASVIRRANDLL 890 Query: 837 KTFE-------KLYHHNQKDMRLYYPEIQTKESKNNLSKNDKL---FVEKIKCLNLDEMS 886 E + + D P + LS D + VE ++ L ++E++ Sbjct: 891 AELEGHTARPTDRHAKPRSDGERALPSAPSTVGSMQLSLFDLVPHPVVEYLRRLRIEELT 950 Query: 887 PLTALKTL 894 PL AL L Sbjct: 951 PLEALNRL 958 >gi|329767740|ref|ZP_08259256.1| DNA mismatch repair protein MutS [Gemella haemolysans M341] gi|328838841|gb|EGF88435.1| DNA mismatch repair protein MutS [Gemella haemolysans M341] Length = 920 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 265/821 (32%), Positives = 446/821 (54%), Gaps = 55/821 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD--IPM 83 TPM+ QY++IK D +FYR+GDFYE+FF+DA AS+ L ITLT R G D IPM Sbjct: 4 TPMIEQYLKIKKDYQDMFLFYRLGDFYEMFFEDATRASKILEITLTARD---GGDEKIPM 60 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CGVP H++ YI L+ G+++AICEQ+ P G +V R VV+++TPGT + Sbjct: 61 CGVPFHSSATYIDTLVNNGYKVAICEQVSEP------GQGKIVERKVVQVITPGTYMNYK 114 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREII-FSE 201 + ++NYL + A+ DI TG + + L ++++ + +E+I + Sbjct: 115 --NYDENNYLGSAYVKDNNIYFAFCDIMTGDSRCTVLKTMADLQDEVLKNNIKEVISIKD 172 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 +EL + Y + E ++ + + D ++ + A Sbjct: 173 QELDISAYITEVELNNDITKEKTSNLTDSNL------------------------RIACD 208 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQSLLKTIDY 320 + YI+KTQ + ++ E +++ + + NLE+ + ++ G ++ SLL +D Sbjct: 209 VLLDYIEKTQNKDISSLKDFEVYFKDKFVYMTNYSLKNLEVTQNMANGGKKGSLLSIVDK 268 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T AG R + + +PL D +I R + + F ++ ++ LK D+ R ++ Sbjct: 269 TSTAAGSRKLKKWLENPLLDLKEIKKRQEIVEDFTKHYFEKADVKTSLKEVYDLERISTK 328 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 + PK++ ++ + I L L + +L+ E + +L L L + + Sbjct: 329 VSYNIVSPKELLNLKKTLAQIPEIKKLLLGFE-SNKLKDIAENIDELT-DLYDYLEATIH 386 Query: 441 DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 ++ ++G ++ G + LD ++ RI+ ++ + E T +KNLK+ +N G Sbjct: 387 EEAGQTVKEGNVIKLGFNEELDRYKNASKNGNRILLEIEEREKERTGVKNLKVGYNKIFG 446 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHR-QTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 YFIEV + V K ++ + HR QT+SN RF + EL +E I N+ +EL Sbjct: 447 YFIEV----SKVGLKTIDPTELGYHRKQTLSNCERFVSEELKKVEEHIVNSKTKIEELEL 502 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 + F+ + I L + ++ ID+ ++L+ +A+E Y +P +++ + DGRH Sbjct: 503 KLFQDVKTKIHNYIVRLQRVANTLSDIDVFVSLSDVAEEYGYVKPEFNDNNVIDIVDGRH 562 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 PIVE+ + S+ +I+NDC + N+ + L+TGPNM GKST++RQ ALIVI+AQ+ Sbjct: 563 PIVERNV---SADSYISNDCKVDKDNN-----ILLITGPNMSGKSTYMRQLALIVILAQI 614 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VPA+YA++ I DK+F+R+G++D+LA G+STFMVEMIE + L ++T S +I DEIG Sbjct: 615 GSFVPATYANLPIFDKIFTRIGASDDLAGGKSTFMVEMIEAKNALVESTANSLLIFDEIG 674 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGT+T DG+++A + +EY++ T +C+ L +TH+HELT L + N + + + + Sbjct: 675 RGTSTYDGIALAQSILEYINNTIKCKTLFSTHYHELTKLENITQGIKNIHVSAKEDHGKL 734 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 IFL+K+ G + SYGI V +LA LP VI A IL+ E Sbjct: 735 IFLYKINEGPIEKSYGIHVAQLAHLPEDVIVGANKILRELE 775 >gi|293977812|ref|YP_003543242.1| DNA mismatch repair protein MutS [Candidatus Sulcia muelleri DMIN] gi|292667743|gb|ADE35378.1| DNA mismatch repair protein MutS [Candidatus Sulcia muelleri DMIN] Length = 851 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 291/889 (32%), Positives = 489/889 (55%), Gaps = 83/889 (9%) Query: 25 STPMMRQYIEIKSINPD-SLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 +TP+++QY +I+ PD +++ +R+GDFYE+F +DA+ S+ L I LTKR K+ I + Sbjct: 5 TTPLIKQYYDIRKKYPDDTIILFRVGDFYEIFGNDAIKCSKILNIALTKRNKN--SSIEL 62 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G P H+ +Y+ KLIK G R+AIC+Q+E KK N R V ++TPG + + Sbjct: 63 AGFPYHSIENYLPKLIKSGFRVAICDQLEKKQIKKKIIN-----RGVTEIITPGVIINSE 117 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF---- 199 +L SN+L ++ I+++DISTG F + + + + + +P E+++ Sbjct: 118 VLESKKSNFLASIDIDNRNIGISFLDISTGEFFVGEGSSNYVDQFFKKFNPNEVLYKKDK 177 Query: 200 --------SEKELSHAEYKSLFETLGNVAVAQPNV---FFDHSISESRIADYYNITTVDT 248 K ++ +F+ L A N+ F +S+ +I + YN Sbjct: 178 KKDLLKIIGNKYYTNGMEDWVFDYLS----AYENLLMQFKTNSLKGFKIENLYNGI---- 229 Query: 249 FGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG 308 AA A ++Y+ + I + + +D NLEI+++ Sbjct: 230 ---------IAAGAILNYVCSICNIKISHISNITKLVENEYVLLDDFTLENLEIIKS-KN 279 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKIL 368 + +L+ +D +I+ GGRL + I PL + +I R ++ FI+N L I + L Sbjct: 280 EKAITLINILDNTISPMGGRLLKKWITFPLKNILEIKKRHKIVDSFIKNNNLYKDINEKL 339 Query: 369 KSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKK 426 K+ D+ R S++ + P +I ++ ++ I NL LK+++ + + ++ + Sbjct: 340 KNISDIERLTSKIVSYKVNPHEIILLSKSLKKITEIKNLLLKSEIYVLKNISYEIKNCEN 399 Query: 427 LPQSLEKTL--SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAE 484 + +EK L SS S LP F ++ LDE R + + SK I ++ + + Sbjct: 400 IYIHIEKILSMSSTNSIILPGFSKE-----------LDELRKIINSSKEYINNICKREKQ 448 Query: 485 ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLE 544 T IK LKI NN G+FIEV S S K+ + S +I +Q + N R+ T EL + E Sbjct: 449 NTGIKKLKILFNNIFGFFIEVKSIS----KEKVPS--HWILKQKLFNCERYITDELKNHE 502 Query: 545 NRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP 604 +I ++ IE + F L + I + ++ L S++IA IDI ++ A A + NY P Sbjct: 503 IKILSSKEKIESIENKIFSKLIDYISKYTDILQFNSKIIAEIDIFMSFAKCAIDNNYICP 562 Query: 605 IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 ++ S N +KDGRHP++EK + +K +I ND + + N ++ ++TGPNM GKS Sbjct: 563 ELNESFNLYIKDGRHPVIEKQI-YSYNKSYIPNDIMM----NNNDSQIIIITGPNMSGKS 617 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 LRQ ALI++MAQ+GSYVPASYA IGIVDK+FSRVGS+DN++ G STFM EM ETASI+ Sbjct: 618 AILRQTALIILMAQIGSYVPASYASIGIVDKIFSRVGSSDNISMGESTFMKEMNETASII 677 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHET-NRCRGLLATHFHELTDLSKSLK 783 N +++SF+ILDEIGRGT+ DG+S+AW+ IE+L++ ++ + L ATH+HEL ++S + Sbjct: 678 NNLSDRSFLILDEIGRGTSNDDGISLAWSIIEFLNKNIHKPKTLFATHYHELNNISNYIN 737 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADH-SYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 N ++ V ++ +IF K++ ++++ SYGI + K+AG+P+++I+RA ++L ++ Sbjct: 738 NIKNYSVSVKKIDDNLIFTRKLLNNVSNNGSYGIHIAKIAGMPDSIINRANELLSIIKRY 797 Query: 843 YHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTAL 891 + +++ Y + K NN+ IK L++D ++P+ A+ Sbjct: 798 ----KINVKFVY---KKKYYINNI-------YSFIKNLDIDNLTPIEAI 832 >gi|161833702|ref|YP_001597898.1| DNA mismatch repair protein MutS [Candidatus Sulcia muelleri GWSS] gi|152206192|gb|ABS30502.1| DNA mismatch repair protein MutS [Candidatus Sulcia muelleri GWSS] Length = 851 Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust. Identities = 291/889 (32%), Positives = 488/889 (54%), Gaps = 83/889 (9%) Query: 25 STPMMRQYIEIKSINPD-SLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 +TP+++QY +I+ PD +++ +R+GDFYE+F +DA+ S+ L I LTKR K+ I + Sbjct: 5 TTPLIKQYYDIRKKYPDDTIILFRVGDFYEIFGNDAIKCSKILNIALTKRNKN--SSIEL 62 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G P H+ +Y+ KLIK G R+AIC+Q+E KK N R V ++TPG + + Sbjct: 63 AGFPYHSIENYLPKLIKSGFRVAICDQLEKKQIKKKIIN-----RGVTEIITPGVIINSE 117 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF---- 199 +L SN+L ++ I+++DISTG F + + + + + +P E+++ Sbjct: 118 VLESKKSNFLASIDIDNRNIGISFLDISTGEFFVGEGSSNYVDQFFKKFNPNEVLYKKDK 177 Query: 200 --------SEKELSHAEYKSLFETLGNVAVAQPNV---FFDHSISESRIADYYNITTVDT 248 K ++ +F+ L A N+ F +S+ +I + YN Sbjct: 178 KKDLLKIIGNKYYTNGMEDWVFDYLS----AYENLLMQFKTNSLKGFKIENLYNGI---- 229 Query: 249 FGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG 308 AA A ++Y+ + I + + +D NLEI+++ Sbjct: 230 ---------IAAGAILNYVCSICNIKISHISNITKLVENEYVLLDDFTLENLEIIKS-KN 279 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKIL 368 + +L+ +D +I+ GGRL + I PL + +I R ++ FI+N L I + L Sbjct: 280 EKAITLINILDNTISPMGGRLLKKWITFPLKNILEIKKRHKIVDSFIKNNNLYKDINEKL 339 Query: 369 KSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKK 426 K+ D+ R S++ + P +I ++ ++ I NL LK+++ + + ++ + Sbjct: 340 KNISDIERLTSKIVSYKVNPHEIILLSKSLKKITEIKNLLLKSEIYVLKNISYEIKNCEN 399 Query: 427 LPQSLEKTL--SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAE 484 + +EK L SS S LP F ++ LDE R + + SK I ++ + + Sbjct: 400 IYIHIEKILSMSSTNSIILPGFSKE-----------LDELRKIINSSKEYINNICKREKQ 448 Query: 485 ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLE 544 T IK LKI NN G+FIEV S S K+ + S +I +Q + N R+ T EL + E Sbjct: 449 NTGIKKLKILFNNIFGFFIEVKSIS----KEKVPS--HWILKQKLFNCERYITDELKNHE 502 Query: 545 NRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP 604 +I ++ IE F L + I + ++ L S++IA IDI ++ A A + NY P Sbjct: 503 IKILSSKEKIESIENNIFSKLIDYISKYTDILQFNSKIIAEIDIFMSFAKCAIDNNYICP 562 Query: 605 IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 ++ S N +KDGRHP++EK + +K +I ND + + N ++ ++TGPNM GKS Sbjct: 563 ELNESFNLYIKDGRHPVIEKQI-YSYNKSYIPNDIMM----NNNDSQIIIITGPNMSGKS 617 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 LRQ ALI++MAQ+GSYVPASYA IGIVDK+FSRVGS+DN++ G STFM EM ETASI+ Sbjct: 618 AILRQTALIILMAQIGSYVPASYASIGIVDKIFSRVGSSDNISMGESTFMKEMNETASII 677 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHET-NRCRGLLATHFHELTDLSKSLK 783 N +++SF+ILDEIGRGT+ DG+S+AW+ IE+L++ ++ + L ATH+HEL ++S + Sbjct: 678 NNLSDRSFLILDEIGRGTSNDDGISLAWSIIEFLNKNIHKPKTLFATHYHELNNISNYIN 737 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADH-SYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 N ++ V ++ +IF K++ ++++ SYGI + K+AG+P+++I+RA ++L ++ Sbjct: 738 NIKNYSVSVKKIDDNLIFTRKLLNNVSNNGSYGIHIAKIAGMPDSIINRANELLSIIKRY 797 Query: 843 YHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTAL 891 + +++ Y + K NN+ IK L++D ++P+ A+ Sbjct: 798 ----KINVKFVY---KKKYYINNI-------YSFIKNLDIDNLTPIEAI 832 >gi|289580016|ref|YP_003478482.1| DNA mismatch repair protein MutS [Natrialba magadii ATCC 43099] gi|289529569|gb|ADD03920.1| DNA mismatch repair protein MutS [Natrialba magadii ATCC 43099] Length = 917 Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust. Identities = 271/865 (31%), Positives = 446/865 (51%), Gaps = 87/865 (10%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY ++ + D++V +++GDFYE F A ++R L I LT R G+ PM G Sbjct: 19 TPMMRQYHDLCARYDDAIVLFQVGDFYETFCGAAERSARLLEIALTSREDSTGE-YPMAG 77 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P+ A YI+ L++ G+R+A+ +Q+E P E +V R V R++TPGTLTED+LL Sbjct: 78 IPIDNAESYIEDLLEAGYRVAVADQVEEPGE-----TSGVVERAVTRVITPGTLTEDELL 132 Query: 146 SPTDSNYLMAVARIR--------TEWAIAWIDISTGIFKISTSNHDRLISD-IMRIDPRE 196 + D+N++ AVAR R E A+A +D+STG F ++S + ++D + R P E Sbjct: 133 ASDDNNFVAAVARGRGIDTRPADDELALALLDVSTGDFLATSSAANEAVADEVSRFAPAE 192 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQP--NVFFDHSISESRIADYYNITTVDTFGSFSQ 254 + + + L + + P FD S S +++Y+ S ++ Sbjct: 193 AVVGPN--------APADVLPDDCMVTPFDEHVFDRERSASILSEYFGEPDA-LLASDAE 243 Query: 255 VEKTAAAAAIS-YIKKTQMVNKPTIGYPERE----------------------------- 284 + A A + Y + + + G + E Sbjct: 244 IRACGALLAYAEYARGGEHEGEKGDGNGDEERDGESDDTSKAGRSHKIGETDRLEYLTHL 303 Query: 285 ---DIQSTLFIDSAARSNLEIL--RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLT 339 D + L +D+ A +LE+ R ++G + +L+ +D + GGR + + PL Sbjct: 304 TRYDPREYLLLDAVALRSLELFEPRAVNGRDDATLVGVLDETACALGGRTLRDWLRRPLL 363 Query: 340 DSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIR 399 +S +I RLD++ + ++L+ D+ R + R+ R +D+ +RD + Sbjct: 364 ESHRIEARLDAVEELTGSVQTREHCHELLRDVYDLERLIGRISRERANARDLRSLRDTLA 423 Query: 400 SGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADA 459 I + D + LR E L L E ++++D P +GG + +G D+ Sbjct: 424 VVPEIRSQLADADC-DRLRDLHEDLDPLADVRELIDDAVVTDP-PIEITEGGIIAEGYDS 481 Query: 460 SLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLES 519 LD+ R K+ I L+ + E T I +LK+ +N+ GY+IEVT+ + + ++ Sbjct: 482 DLDDLRGTARDGKQWIDDLEARERERTGIDSLKVGYNSVHGYYIEVTNPNLDAVPEN--- 538 Query: 520 KDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNA 579 + RQT+ N RF T EL + E+ I A A E E F + + I ++ E + Sbjct: 539 ---YQRRQTLKNSERFVTPELKEREDEIVGAEERADEREYELFCAVRSDIGDEVERVQGL 595 Query: 580 SQVIAIIDISIALAILAKEQNYCRP--------IIDNSTNFIVKDGRHPIVEKTLKQQSS 631 + +A +D ++LA +A + +YCRP ID + GRHP+VE+T Q+S Sbjct: 596 ADALATLDALVSLATVAAQYDYCRPEILDPDADHIDGGVQIDITGGRHPVVERT--QES- 652 Query: 632 KPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIG 691 F+ N +L ++TGPNM GKST++RQ A +V++AQ+GS+VPA A + Sbjct: 653 --FVPNGAQFDSEQ-----RLAVITGPNMSGKSTYMRQVAQLVLLAQVGSFVPAESARLT 705 Query: 692 IVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIA 751 V+++F+RVG++D++A GRSTFMVEM E A+IL A +S V+LDE+GRGT+T DGL+IA Sbjct: 706 PVERVFTRVGASDDIAGGRSTFMVEMDELATILRDADERSLVLLDEVGRGTSTADGLAIA 765 Query: 752 WATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIAD 811 A E+LH+ L ATH H LT+L++ L +V ++ ++F H++ PG A Sbjct: 766 QAITEHLHDAVGATTLFATHHHPLTELAEELPNAFTLHFEVEQTDGEVVFHHEIEPGAAT 825 Query: 812 HSYGIQVGKLAGLPNTVISRAYDIL 836 SYG++V AG+P V+ R+ +++ Sbjct: 826 GSYGVEVATAAGVPEAVVDRSRELV 850 >gi|309805603|ref|ZP_07699646.1| DNA mismatch repair protein MutS [Lactobacillus iners LactinV 09V1-c] gi|308165104|gb|EFO67344.1| DNA mismatch repair protein MutS [Lactobacillus iners LactinV 09V1-c] Length = 776 Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust. Identities = 251/782 (32%), Positives = 425/782 (54%), Gaps = 40/782 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM QY +IK PD+ +FYR+GDFYELF DDA+ ++ L +TLT R K IPM G Sbjct: 6 TPMMEQYYKIKQQYPDAFLFYRVGDFYELFEDDAVKGAKLLELTLTHRSNKSAKPIPMAG 65 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP + YI L+ G+++AICEQ+E P +A+ +V+R +++LVTPGT+ D Sbjct: 66 VPHLAVDSYINTLVDKGYKVAICEQLEDPKKAQ-----GMVKRGIIQLVTPGTVINDNPD 120 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTG-IFKISTSNHDRLISDIMRIDPREIIFSEKEL 204 +SNYL ++ W + + D+STG + ++ + ++++++ + RE+++ E Sbjct: 121 QAKESNYLTSLCSSSQGWGLTYCDLSTGESYATHLTSWEMIVNELLSLQTRELVYGEALT 180 Query: 205 SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI 264 S K +F + ++QP +++ + + T +Q+E A + Sbjct: 181 SD---KQIFLKKAGITLSQP----------VKLSKEHAEVSYVTQQLHNQLEIAATKQLL 227 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSIT 323 +Y+ TQ + + + + L + ++NLE++++ +G + SL +D + T Sbjct: 228 AYLLATQKRSLAHLQVTQSYEPNQYLQMSHIVQTNLELIKSAKTGKKMGSLFWLLDKTST 287 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 GGRL I PL ++I +R + + I K L+ D+ R R+ + Sbjct: 288 AMGGRLLKSWIERPLISLSEIKSRQLVVTALFDDYFSREKIIKQLQGVYDLERLTGRVAL 347 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFL--KNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 G +++ + D + I+N+ KN++ ++ LK + + KT+ + Sbjct: 348 GSANARELLQLADSLAVVPEIINILANSKNEVLNNFAQKIDPLKGIHDLIVKTIV----E 403 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 + P ++GG ++ G + LD R K+ +A + E+T I NL++ +N GY Sbjct: 404 NPPLSTKEGGIIKAGVSSQLDRYRDAMMNGKKWLADMANSEREKTGINNLRVGYNKVFGY 463 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 +IEVT+S KD DR++ +QT++N R+ T+EL + E I A + + +E E Sbjct: 464 YIEVTNSY-----KDKVPLDRYMRKQTLTNAERYITVELKEHEALILEAQDYSTDLEYEL 518 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY-CRPIIDNSTNFIVKDGRHP 620 F L I + +L ++ ++ +D+ ++L+++ NY C +S+ + +GRHP Sbjct: 519 FTNLREDIKKYIPALQKLAKQLSSLDVLATFSLLSEQNNYVCPQFSQDSSAINIVNGRHP 578 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + S + +I ND + D+ + ++L+TGPNM GKST++RQ ALI+IMAQ+G Sbjct: 579 VVEKVM---SDEEYIPNDVKM----DEQTN-IFLITGPNMSGKSTYMRQLALIIIMAQIG 630 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 ++PA A + I DK+F+R+G+ D+L SG+STFMVEM E LN AT +S ++ DEIGR Sbjct: 631 CFIPADSAVLPIFDKIFTRIGAGDDLISGKSTFMVEMSEANIALNNATKRSLILFDEIGR 690 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GTAT DG+++A A I+YLH+ + L ATH+HELTDL + L N + + N Sbjct: 691 GTATYDGMALAGAIIKYLHDKVGAKTLFATHYHELTDLDQELAHLKNIHVGATQENGHFN 750 Query: 801 FL 802 F Sbjct: 751 FF 752 >gi|241888792|ref|ZP_04776098.1| DNA mismatch repair protein MutS [Gemella haemolysans ATCC 10379] gi|241864468|gb|EER68844.1| DNA mismatch repair protein MutS [Gemella haemolysans ATCC 10379] Length = 920 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 265/819 (32%), Positives = 448/819 (54%), Gaps = 51/819 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM+ QY++IK D +FYR+GDFYE+FF+DA AS+ L ITLT R K IPMCG Sbjct: 4 TPMIEQYLKIKKDYQDMFLFYRLGDFYEMFFEDATRASKILEITLTARDGGAEK-IPMCG 62 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H++ YI L+ G+++AICEQ+ P G +V R VV+++TPGT + Sbjct: 63 VPFHSSATYIDTLVNNGYKVAICEQVSEP------GQGKIVERKVVQVITPGTYMNYK-- 114 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREII-FSEKE 203 + ++NYL + A+ DI TG + + L ++++ + +E+I ++E Sbjct: 115 NYDENNYLGSAYVKDNNIYFAFCDIMTGDSRCTVLKTMADLQDEVLKNNIKEVISIKDQE 174 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 L + Y + E ++ I++ + + N+T + + A Sbjct: 175 LDISAYITEVE-------------LNNDITKEKTS---NLTDTNL--------RIACDVL 210 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQSLLKTIDYSI 322 + YI+KTQ + ++ E +++ + + NLE+ + ++ G ++ SLL +D + Sbjct: 211 LDYIEKTQNKDISSLKDFEVYFKDKFVYMTNYSLKNLEVTQNMANGGKKGSLLSIVDKTS 270 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T AG R + + +PL D +I R + + F ++ ++ LK D+ R +++ Sbjct: 271 TAAGSRKLKKWLENPLLDLKEIKKRQEIVEDFTKHYFEKADVKTSLKEVYDLERISTKVS 330 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 PK++ ++ + I L L + +L+ E + +L L L + + ++ Sbjct: 331 YNIVSPKELLNLKKTLAQIPEIKKLLLGFE-SNKLKDIAENIDELT-DLYDYLEATIHEE 388 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 ++G ++ G + LD ++ RI+ ++ + E T +KNLK+ +N GYF Sbjct: 389 AGQTVKEGNVIKLGFNEELDSYKNASKNGNRILLEIEEREKERTGVKNLKVGYNKIFGYF 448 Query: 503 IEVTSSSASVLKKDLESKDRFIHR-QTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 IEV + V K ++ + HR QT+SN RF + EL +E I N+ +EL+ Sbjct: 449 IEV----SKVGLKTIDPTELGYHRKQTLSNCERFVSEELKKVEEHIVNSKTKIEELELQL 504 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 F+ + I L + ++ ID+ ++L+ +A+E Y +P +++ + DGRHPI Sbjct: 505 FQEVKTKIHNYIVRLQRVANTLSDIDVFVSLSDVAEEYGYVKPEFNDNNIIDIVDGRHPI 564 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE+ + S+ +I+NDC + N+ + L+TGPNM GKST++RQ ALIVI+AQ+GS Sbjct: 565 VERNV---SADSYISNDCKVDKDNN-----ILLITGPNMSGKSTYMRQLALIVILAQIGS 616 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA+ A++ I DK+F+R+G++D+LA G+STFMVEMIE + L ++T S +I DEIGRG Sbjct: 617 FVPATSANLPIFDKIFTRIGASDDLAGGKSTFMVEMIEAKNALVESTGNSLLIFDEIGRG 676 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIF 801 T+T DG+++A + +EY++ T +C+ L +TH+HELT L + N + + + +IF Sbjct: 677 TSTYDGIALAQSILEYINNTIKCKTLFSTHYHELTKLENITQGIKNIHVSAKEDHGKLIF 736 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 L+K+ G + SYGI V +LA LP VI A IL+ E Sbjct: 737 LYKINEGPIEKSYGIHVAQLAHLPEDVIVGANKILRELE 775 >gi|320449600|ref|YP_004201696.1| DNA mismatch repair protein MutS [Thermus scotoductus SA-01] gi|320149769|gb|ADW21147.1| DNA mismatch repair protein MutS [Thermus scotoductus SA-01] Length = 808 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 280/884 (31%), Positives = 455/884 (51%), Gaps = 104/884 (11%) Query: 27 PMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI--PMC 84 P+++QY+E++ PD L+ +++GDFYE F +DA +R LG+ LT + GKD PM Sbjct: 12 PLLQQYVELRDRYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKS---GKDFTTPMA 68 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G+P+ + Y ++L+K+G R+A+ +Q+E EA+ LVRR V +L+TPGTL ++ L Sbjct: 69 GIPIRAFDAYAERLLKMGFRLAVADQVEPAEEAE-----GLVRREVTQLLTPGTLVQETL 123 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 LS ++NYL A+A + +A++D+STG FK + + L ++ R P E++ + + Sbjct: 124 LS-KEANYLAAIA-TGDGFGVAFLDVSTGEFKGTLLKSKSALYDELFRHRPAEVLLAPEL 181 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 + E+ F+ F +SE+ + G S + A Sbjct: 182 RENQEFVEEFQKR-----------FPVMLSEA---------PFEPVGEGSLALRRVQGAL 221 Query: 264 ISYIKKTQ---MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 + Y + TQ +P Y D + + + A LE+ + G + +L +D Sbjct: 222 LWYARWTQGEGFSPRPFRPY----DPGAFMHLPEATLRALEVFEPIRG--QDTLFGVLDE 275 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G RL + PL ++ + RLD + F++ L ++++L D+ R +R Sbjct: 276 TRTAFGRRLLQSWLRHPLLEAGPLEARLDRVERFVREGALREGVRRLLFRLADLERLATR 335 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ--SLEKTLSSM 438 L++GR P+D+ +R + IL ELR + + LP SL + L + Sbjct: 336 LEMGRASPRDLG----SLRRSLEILP---------ELRALLGEEVVLPDLGSLLEELRAA 382 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 L ++LP +GG +R G D LD R + L+ + T I LK+ +N Sbjct: 383 LEEELPLKLSEGGLIRQGYDPHLDALRQAHREGVAYFLELEEREKARTGIPTLKVGYNAV 442 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY++EVT + + ++ QT+ + R+T E+ + E + E Sbjct: 443 FGYYLEVTRPYYERVPPEYKAI------QTLKDRQRYTLPEIKERERELYRLEAQIRRRE 496 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 E F L +++E+L A++V+A +D+ ALA +A Y RP + ++ GR Sbjct: 497 EEVFLELREKARKEAEALREAARVLAELDVYAALAEVAVRYGYVRPRFGDRLQ--IRGGR 554 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ F+ ND +++ +L L+TGPNM GKST+LRQ ALI ++AQ Sbjct: 555 HPVVERRTS------FVPNDLEMAH-------ELVLVTGPNMAGKSTYLRQTALIALLAQ 601 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA A + + D++ +R+G++D+LA GRSTFMVEM E A IL +AT +S V+LDE+ Sbjct: 602 IGSFVPAEEAVLPLFDRILTRIGASDDLAGGRSTFMVEMEEVALILKEATERSLVLLDEV 661 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT++LDG++IA A E LHE RC L ATH+ ELT L L R N + + G Sbjct: 662 GRGTSSLDGVAIATAVAEALHE-RRCYTLFATHYFELTAL--PLPRLKNLHVAAKEEEGG 718 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQ 858 + F H+V+PG A SYG++V ++AGLP V+ RA +L+ Sbjct: 719 LTFYHQVLPGPASKSYGVEVARMAGLPKEVVERAKALLQVL------------------- 759 Query: 859 TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTL 902 + +EK+ L+ + ++PL AL+ L+ +KA L Sbjct: 760 ----TARREGAAEAVLEKLISLDPNTLTPLEALRLLHELKALAL 799 >gi|124515687|gb|EAY57196.1| DNA mismatch repair protein (MutS) [Leptospirillum rubarum] Length = 843 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 272/834 (32%), Positives = 428/834 (51%), Gaps = 64/834 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ RQY + S SL+ +R+GDFYELF + A SR LG+TLT R ++ +PMCG Sbjct: 16 TPLFRQYQSLLSEVGHSLLLFRLGDFYELFGEQAETVSRVLGLTLTTRDRNRPNPLPMCG 75 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P + + Y+ +L+ G +AI EQ+ A + + L R +VR+VT TL ED L Sbjct: 76 IPARSLDLYLPRLVYEGFSVAIAEQV-----ATQGDTEGLFPRQIVRVVTRATLIEDPSL 130 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKI--------STSNHDRLISDIMRIDPREI 197 S + +AVAR W+ A +D++ G + S D L+ + R +P E+ Sbjct: 131 SGGNMKNALAVAREGGRWSGACLDLTDGTLSVFEPENSPPSDLPPDPLVDWVSRKNPEEV 190 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 + E SL + + F S+ + + + V SF E Sbjct: 191 L--------VEDPSLLSSFAH--------FQGASVKREQQEGWRDFLPV----SFRMPEL 230 Query: 258 T-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 A + + Y+ Q P + E+ L +D RS+L L E+ Sbjct: 231 APQSLKALSMLVGYVAWHQKSILPHLTGVVLENDSGNLVLD---RSSLRHLDLFPFGEEK 287 Query: 313 ----SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKIL 368 SL + +D + T G R + SP +I R +F +P + L Sbjct: 288 KKPGSLFEVLDRARTAMGSRTLRRWLLSPDATGGRIAVRHSVQRYFSDHPRFFDETIAQL 347 Query: 369 KSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI-LNLFLKNDLPEELRGAVEKLKKL 427 ++ D+ R L R+ + P+DIA IRD + + I L ++ P L A+ L +L Sbjct: 348 RNVGDLERMLGRVGLKGRVPRDIAGIRDSLEWSMEIALRPEWQDFFPHSLSTAL--LSEL 405 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 L L L ++ +G + D D+ L RS+ + + +L+ + E T Sbjct: 406 -SGLRDLLKEALVEEPAITLGEGPVISDTFDSELRRLRSMEQTGDQELLALENQEKERTG 464 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 I+NL++++N GYFIE++ + + +Q ++N+ RFT ELI E+RI Sbjct: 465 IENLRVRYNQVSGYFIEISKGQVKKVPA------HYFRKQILTNVERFTIPELISFEDRI 518 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 A + LL E E + L + I+EQ+E+L S+++ ID A ++ K YC P I Sbjct: 519 QQARQAVLLREGELLDSLRSRILEQAENLQILSRLVGEIDALHAFHLVGKTFGYCLPEIT 578 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 + + GRHP++E+ + S F+ ND D+ G+ +LTGPNM GKST++ Sbjct: 579 TEGSLQILGGRHPVLERRIPPAS---FVPNDVDV------GQGEFIILTGPNMAGKSTYM 629 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 R ALI IMAQ G+ VPA A + +VD++ +RVG++D++ G STFMVEM E + ILN+A Sbjct: 630 RMIALIQIMAQAGAPVPADRARVPLVDRILTRVGASDHILEGESTFMVEMNEMSRILNEA 689 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 +++S V+LDE+GRGT+T DG+++AW+ E++H+ RCR L ATH+HEL L+ R N Sbjct: 690 SSRSLVLLDEVGRGTSTFDGMALAWSISEFIHDRIRCRTLFATHYHELHQLATKRSRVRN 749 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 + V+ + IIF H++ PG SYG+ V +LAG+P V+ RA+DIL+ ++K Sbjct: 750 LHVSVAVRDRKIIFHHRISPGHTSRSYGVDVARLAGIPEVVVERAFDILRFWDK 803 >gi|7188744|gb|AAF37851.1|AF227730_1 mismatch repair protein MutS [Sinorhizobium meliloti] Length = 351 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 198/346 (57%), Positives = 258/346 (74%), Gaps = 6/346 (1%) Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 ELE+FE + ++ ++E++ A+ +A ID+S LA+LA+EQNY RP +D S F + G Sbjct: 1 ELETFEAMVREVVAEAEAIKAAALALATIDVSAGLAVLAEEQNYTRPTVDRSRMFAIDGG 60 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ L++Q++ PF+AN CDLS PN + G +WLLTGPNMGGKSTFLRQNALI IMA Sbjct: 61 RHPVVEQALRRQAANPFVANGCDLSPPNGEQGGAIWLLTGPNMGGKSTFLRQNALIAIMA 120 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q GS+VPA+ AHIG+VD+LFSRVG++D+LA GRSTFMVEM+ETA+ILNQAT++S VILDE Sbjct: 121 QTGSFVPAAAAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQATDRSLVILDE 180 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGTAT DGLSIAWA +E+LHE NRCRGL ATHFHELT LS+ L R NAT++V + + Sbjct: 181 IGRGTATFDGLSIAWAAVEHLHEVNRCRGLFATHFHELTVLSEKLVRLSNATMRVKEWDG 240 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK-----DMRL 852 +IFLH+V PG AD SYGIQV +LAGLP +V++RA D+L E N D+ L Sbjct: 241 DVIFLHEVGPGAADRSYGIQVARLAGLPASVVARARDVLAKLEDADRKNPASQLIDDLPL 300 Query: 853 YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + ++ +E+ S K+ E +K LN D+M+P AL LYA+K Sbjct: 301 FQVAVRREEAARASSGPSKV-EEALKALNPDDMTPREALDALYALK 345 >gi|270290979|ref|ZP_06197202.1| DNA mismatch repair protein MutS [Pediococcus acidilactici 7_4] gi|270280375|gb|EFA26210.1| DNA mismatch repair protein MutS [Pediococcus acidilactici 7_4] Length = 840 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 265/812 (32%), Positives = 433/812 (53%), Gaps = 75/812 (9%) Query: 43 LVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIG 102 +FYR+GDFYELF+DDA+ S+ L +TLT R K+ IPMCGVP H A +YI L+ G Sbjct: 3 FLFYRIGDFYELFYDDAIKGSQLLELTLTARSKNADDPIPMCGVPHHAAQNYIDILVDQG 62 Query: 103 HRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVA--RIR 160 +++AICEQ+E P + K +V+R V++LVTPGT T+ + ++NYL AV+ Sbjct: 63 YKVAICEQMEDP-----KAAKGMVKREVIQLVTPGTTTDQKAEDAKENNYLTAVSFDAAT 117 Query: 161 TEWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNV 219 ++ A+ D+STG K++ + + ++++ + + REI+ + + H + F+ L N+ Sbjct: 118 KKYGFAYTDLSTGELKVAILDDIESVVNEAVGLRTREIVADQYFVEH--FGERFKEL-NI 174 Query: 220 AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIG 279 V+Q N D IS N+T+ Q+ + Y++ TQ N + Sbjct: 175 LVSQQN---DVEISAELSYLIQNLTSPIAVQVVKQL--------LMYVQVTQKRNLAHMQ 223 Query: 280 YPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPL 338 + L +D A++ NLE+ R + +G ++ +LL +D + T GGRL + + PL Sbjct: 224 KAIAYEPSFYLRMDHASKYNLELTRLIRTGKKQGTLLWLLDETKTAMGGRLLKQWLDRPL 283 Query: 339 TDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 IN R + +++ + +Q+ L D+ R R+ G +D+ ++ + Sbjct: 284 IRKDAINARQSRVQVLLEHFFERSNLQEELTKVYDLERLAGRVAFGNVNGRDLIQLKTSL 343 Query: 399 RSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGAD 458 I ++ + D P A+ +L + + + + + + +D P +G ++DG + Sbjct: 344 LQIPKIRHVLAELDDP-VFDEALTRLDPVSE-IADLIEAAIDEDAPISVTEGNVIKDGYN 401 Query: 459 ASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSS-ASVLKKDL 517 LDE R K+ IA LQ + + T IKNLKI +N GY+IEVT ++ ASV Sbjct: 402 PKLDEYRDAMRNGKKWIADLQAQERQATGIKNLKIGYNKVFGYYIEVTRANLASV----- 456 Query: 518 ESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLD 577 + R+ +QT++N RF T EL + E I A + +E E F+ + I EQ E L Sbjct: 457 -PEGRYERKQTLTNAERFITPELKEKERIILEAEQKSTDLEYELFKKIRETIKEQIERLQ 515 Query: 578 NASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIAN 637 N ++ +A +D+ + A++++E + +P + S +K GRHP+VEK + QS ++ N Sbjct: 516 NLAKQVAELDVLQSFAVVSEEYQFVKPTMTESHEIEIKAGRHPVVEKVMGHQS---YVPN 572 Query: 638 DCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLF 697 D ++ ++ L+TGPNM GKST++RQ AL VIMAQMG +VPA A+ + D Sbjct: 573 DILMN-----QDTEILLITGPNMSGKSTYMRQLALTVIMAQMGCFVPAEEANRALKD--- 624 Query: 698 SRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEY 757 T S ++ DEIGRGTAT DG+++A + IE+ Sbjct: 625 -----------------------------GTANSLILFDEIGRGTATYDGMALAQSIIEF 655 Query: 758 LHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQ 817 +H+ + L +TH+HELT L ++L R N + + + ++FLHK+ G AD SYGI Sbjct: 656 IHQNVHAKTLFSTHYHELTALDQTLTRLKNVHVGAVEQDGNLVFLHKMEDGPADKSYGIH 715 Query: 818 VGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 V KLAG+P+++++RA IL E+L + NQ D Sbjct: 716 VAKLAGMPDSLLARASVIL---EQLENENQGD 744 >gi|226356533|ref|YP_002786273.1| DNA mismatch repair protein MutS [Deinococcus deserti VCD115] gi|226318523|gb|ACO46519.1| putative DNA mismatch repair protein MutS [Deinococcus deserti VCD115] Length = 849 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 286/884 (32%), Positives = 453/884 (51%), Gaps = 81/884 (9%) Query: 27 PMMRQYI----EIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI- 81 PM+ QY+ E+ P +++ +++GDFYE F +DA +R L + LT + KD Sbjct: 18 PMLDQYVRMRDEVAQQLPHAILLFQVGDFYETFGEDAERTARLLSLALTHKTS---KDFS 74 Query: 82 -PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 PM G+PV + ++KL+ G +A+ +Q+E LV R V +L+TPGT+T Sbjct: 75 TPMAGIPVRALDQNVEKLLAAGVCVAVADQMEE-------AGTGLVDRKVTQLLTPGTVT 127 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREII 198 E++ L D NYL AVA +A+A +D+STG F+ + + H R L ++ R RE++ Sbjct: 128 EERHLG-ADENYLAAVA-TGDGYALALLDVSTGDFR-AAAFHTRVALYDELGRHRAREVL 184 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + + + S F+ V ++ N D S +E + T + GS + Sbjct: 185 LAPELAGNPALLSDFQGRFPVMLSPANFAEDASRAE------LHRTLGEVPGSLNSAALV 238 Query: 259 AAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 A AI Y + Q + R + + + + AA LE+ + S + +L+ Sbjct: 239 RACGAILGYARMAQQGQLAMVRRVVRFEPGAHMRLPEAAVRALELFQAQS-PQGVTLMDV 297 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 + + T G R + +PL D I RLDS+ + P L ++ +L + D+ R Sbjct: 298 LCQTRTAGGRRRLRAWLRAPLLDELSIQARLDSVQALTRAPDLRGSVRSLLYRAHDLERL 357 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 +R+ R P+++A + + + + L D L G +L LP + + ++ Sbjct: 358 AARVATRRASPREVASLARTLDLLPDAVTLLAGQD--GLLAGVHTRLSSLPDVVTRIRAA 415 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 M+ DD P DGG +RDG A LDE R+ + +A L++ E T I +LK+ NN Sbjct: 416 MV-DDPPLRLGDGGLIRDGFHAELDELRAGALAHREWLAQLEITERERTGISSLKVGFNN 474 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQ--TMSNLTRFTTLELIDLENRITNATNSAL 555 GY++EVT S + D +RQ T+ + RFT +L + E I +A Sbjct: 475 VFGYYLEVTGPHLSKVPPD--------YRQVATLKDRARFTRPDLREREREIARLEAAAS 526 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E+E F L +A+ +E+L A+ +A +D+ ALA LA E + RP + +V+ Sbjct: 527 RLEIEVFTELRDALSAHAEALSEAAGALAELDVLSALAELAVESGWTRPRTTDGETRLVQ 586 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 RHP+VE++ + F+ ND L LLTGPNM GKST+LR AL + Sbjct: 587 -ARHPVVERS----AGGRFVPNDAQLGTGRHT-----LLLTGPNMAGKSTYLRTVALCAL 636 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 + Q+GS+VPA A + + D + +R+G++D+LA GRSTFMVEM E A+IL+ AT++S VIL Sbjct: 637 LHQIGSFVPADRAELPVYDAIHTRIGASDDLAGGRSTFMVEMSELAAILHGATHRSLVIL 696 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK---SLKRFHNATLQV 792 DE+GRGT+TLDGL+IA A +E+LH T R L ATH+ ELT L L H A + Sbjct: 697 DEVGRGTSTLDGLAIAHAALEHLHAT-RAHTLFATHYFELTRLEADFPGLVNLHVAAEED 755 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 + + G+ F H+V+PG A SYG++V +LAGLP V RA +L + Sbjct: 756 AAGSGGLTFYHQVVPGAARQSYGVEVARLAGLPAPVTHRAAQLLTSL------------- 802 Query: 853 YYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYA 896 N +D+ + ++ L+L ++P+ AL+ L++ Sbjct: 803 ------------NAQGDDRRLIRELAALDLSRLTPMQALEVLHS 834 >gi|241116856|ref|XP_002401641.1| DNA Mismatch Repair (MMR) protein MutS, putative [Ixodes scapularis] gi|215493185|gb|EEC02826.1| DNA Mismatch Repair (MMR) protein MutS, putative [Ixodes scapularis] Length = 582 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 232/586 (39%), Positives = 353/586 (60%), Gaps = 15/586 (2%) Query: 250 GSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS 309 G S + A + + Y+ TQ N P + P + S + ID A R NLEI+ G Sbjct: 8 GEISSSQICAIGSILEYLSLTQKQNIPHLPIPRIINFHSYMTIDFATRRNLEIVTNSQGG 67 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 + SLL T+++++T GGRL ++SPLTD KIN RL+ FF N ++ +++LK Sbjct: 68 SKGSLLSTLNHTVTKQGGRLLYNFLSSPLTDIAKINHRLNITEFFYSNLEIVKRTRELLK 127 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN---DLPEELRGAVEKLKK 426 + D+ R L+R+ + R +D+ I+ + + I +F +LP+ + ++ L Sbjct: 128 KTSDIERCLTRITMNRSSGRDLLSIKYTLETATIIKGVFFDAYGFNLPDFIEKIIKPLSG 187 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 + L + + ++ P +GG ++ + + L + K I L+ +Y +ET Sbjct: 188 -NEELYNLIDETIRENAPNNLNEGGIIKHEYHPKVAQLHDLINNGKLHIEKLKEQYRKET 246 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 I +LKI HNN +G FI++T+ + + K +SK FIHRQT N R+TT EL LE+ Sbjct: 247 GIDSLKISHNNVIGLFIDITAKN---INKITDSK--FIHRQTTVNNVRYTTAELQKLESD 301 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 + NA + +E E + + + +IE++ L + ++ +D+ A +A E +Y + Sbjct: 302 LVNAKTLVISLEKELYADICSQVIEKASYLRILASSLSGLDVFCNFAYIADEYDYVKAEF 361 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 + +F + GRHP+VEK L QQ SK F+ NDC LS ++WL+TGPNM GKSTF Sbjct: 362 TDDLSFDIVKGRHPVVEKAL-QQESKSFVYNDCHLS-----ELERIWLITGPNMAGKSTF 415 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 LRQNA+I I+AQ+GS+VPA A IG+VDK+FSR+G+AD+L G+STFM EM+ET++IL Q Sbjct: 416 LRQNAIIAIIAQIGSFVPAKSAKIGVVDKIFSRIGAADDLIKGQSTFMAEMLETSAILAQ 475 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 +T S +ILDE+GRGT+T DG+SIAW+ +EY+H+ +CR L ATH+HELT +S L Sbjct: 476 STKNSLIILDEVGRGTSTYDGVSIAWSVLEYIHDKLKCRCLFATHYHELTVMSNFLPALQ 535 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 N T+ + +S + I+FLH +I G AD SYG+ V LAGLP +VI+RA Sbjct: 536 NYTIAIEESGKDILFLHNIISGAADRSYGLHVAALAGLPASVINRA 581 >gi|163848498|ref|YP_001636542.1| DNA mismatch repair protein MutS [Chloroflexus aurantiacus J-10-fl] gi|222526432|ref|YP_002570903.1| DNA mismatch repair protein MutS [Chloroflexus sp. Y-400-fl] gi|189030708|sp|A9WFZ9|MUTS_CHLAA RecName: Full=DNA mismatch repair protein mutS gi|254766621|sp|B9LB04|MUTS_CHLSY RecName: Full=DNA mismatch repair protein mutS gi|163669787|gb|ABY36153.1| DNA mismatch repair protein MutS [Chloroflexus aurantiacus J-10-fl] gi|222450311|gb|ACM54577.1| DNA mismatch repair protein MutS [Chloroflexus sp. Y-400-fl] Length = 966 Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust. Identities = 286/901 (31%), Positives = 447/901 (49%), Gaps = 107/901 (11%) Query: 30 RQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR----GKHLGKD----- 80 RQY ++K D+++ +R GDFYE F DDA L + L ITLT++ K L KD Sbjct: 11 RQYRKLKEEAADAILLFRFGDFYETFDDDAKLIAELLDITLTRKEYAVDKRLPKDQQKLY 70 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNK----------------S 124 PM G+P H + Y+ +LI G+R+AI EQ+ S EA + + Sbjct: 71 APMAGMPYHAVDRYVSELIARGYRVAIAEQL-SETEAMRNDTRPRSVYAAGLTPVESSGK 129 Query: 125 LVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR 184 +V+R +VR++TPGT+ + +L +NYL AV + + +A+ D+STG F + R Sbjct: 130 MVQRAIVRVITPGTVIDPAMLPDRTNNYLAAVIVEQGKVGLAYADLSTGEFAAAEFTDAR 189 Query: 185 ----LISDIMRIDPREIIFSEKE-----------------------------LSHAEYKS 211 L +++ R+ P E++ + E L H Sbjct: 190 ALMQLQAELARLSPAEVLVPDDEALRLPNLEPVQARLSQDLAPLTKEEREALLPHERVAR 249 Query: 212 LFETLGNVAVAQ------PNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI- 264 E + Q P ++ + + + ++ + ++ G + T AA A+ Sbjct: 250 RLEGASAASWTQGYVTEWPLWRWELATTTEVLCEHLALPSLAVCGLDGRPLATRAAGALL 309 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE---QSLLKTIDYS 321 Y + TQ + + + +D R NLE+L SG R+ SL+ +D + Sbjct: 310 QYAQVTQRQRVSQLRALRVYHTGAYMLLDPQTRRNLELLE--SGGRQGAKASLIAVLDRT 367 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G RL I PL + R ++ + + ++ L PD+ R+L+R+ Sbjct: 368 CTAMGARLLRRWITQPLIVIEPLQVRQHAVARLVAETMARLEVRSALADLPDMERALNRI 427 Query: 382 KIG--RGEPKDIAVIRDGIR---SGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 G P+D+ +R +R + + L + L E+ G + + + L Sbjct: 428 AQGITVATPRDMTQLRAALRKLPAVAQAVQALLPDLLAAEMPGEPPLVFDVCADVLDLLE 487 Query: 437 SMLSDDLPTF---------KRDGG-----FLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L DD P +GG +R G D LD ++ I L+ K Sbjct: 488 RALDDDPPALLGSSNYLRAAEEGGERPRRVIRPGFDQRLDALIRASRHAQEFIDRLESKE 547 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSS-SASVLKKDLESKDRFIHRQTMSNLTRFTTLELI 541 E T I++LK+ +N GY+IE++ + A ++ E K QT+ N R+ T EL Sbjct: 548 RERTGIRSLKVGYNQVFGYYIEISRAVDAKLIPAHYERK------QTLVNAERYVTEELK 601 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 E +++A + +E + F+ L + + + L +A ID ALA +A Y Sbjct: 602 YYEGLLSDARLKLVDLERDIFQRLCDELQPHLDRLRATIAAVARIDALAALAEVAVRGRY 661 Query: 602 CRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 +P + +K GRHP+VE+TL S+PFI ND DL D ++ ++TGPNM Sbjct: 662 VQPRLRTDRVLRIKQGRHPVVERTL----SEPFIGNDIDL----DGEQAQILIITGPNMA 713 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKSTFLRQ ALI +MAQ+GS+VPA A IG+VD++F+R+G+ D++A+G+STFMVEM ETA Sbjct: 714 GKSTFLRQVALITLMAQIGSFVPADEAEIGLVDRIFTRIGAQDDIATGQSTFMVEMTETA 773 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLS 779 ++L Q+T +S +ILDE+GRGT+T DG++IA A +EY+H+ R CR L ATH+HEL L Sbjct: 774 ALLMQSTPRSLIILDEVGRGTSTYDGMAIARAVVEYIHDHPRLGCRTLFATHYHELIALE 833 Query: 780 KSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF 839 + L R N + + + ++FLH++ PG AD SYGI V +LAG+P VI RA +L Sbjct: 834 RELPRVRNYHMAAVERDGRVVFLHELRPGGADRSYGIHVAELAGIPPEVIRRASALLADL 893 Query: 840 E 840 E Sbjct: 894 E 894 >gi|320335096|ref|YP_004171807.1| DNA mismatch repair protein MutS [Deinococcus maricopensis DSM 21211] gi|319756385|gb|ADV68142.1| DNA mismatch repair protein MutS [Deinococcus maricopensis DSM 21211] Length = 854 Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust. Identities = 293/906 (32%), Positives = 470/906 (51%), Gaps = 93/906 (10%) Query: 13 SEQIDLEENLKSST-----PMMRQYIEIK-SIN---PDSLVFYRMGDFYELFFDDALLAS 63 +E+I + LK S PM++QY++++ S+ P S++ ++ GDFYE F +DA AS Sbjct: 6 TERIHHDLGLKGSGRGPLPPMLQQYVDMRDSVAENLPGSILLFQCGDFYETFGEDAERAS 65 Query: 64 RCLGITLTKRGKHLGKDI--PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRG 121 R LG+TLT + KD PM G+PV A +I++L+ +G R+A+ +Q+E P Sbjct: 66 RLLGLTLTHKTS---KDFSTPMAGIPVRAAETHIERLLNLGVRVAVADQMEEP------- 115 Query: 122 NKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-S 180 LV R V +L TPGT+T+++L+ D NYL AVA +A+A +D+STG F+ ++ Sbjct: 116 GAGLVDRKVTQLYTPGTVTDEKLIG-QDENYLAAVA-TGEGYALALLDLSTGEFRCASFG 173 Query: 181 NHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADY 240 L ++ R RE++ + + +A + F+ V ++ + ++ R Sbjct: 174 TRTALYDELGRHRAREVLLAPELEGNAALLADFQARFPVMLSHASFDAQDAVGALR---- 229 Query: 241 YNITTVDTFGSFSQVEKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSA 295 DT G T A A + Y + TQ + R + + + + Sbjct: 230 ------DTLGDVPASLSTPALVRACGAVLLYARGTQQGRLDMVRRVTRYEPGAQMHLADQ 283 Query: 296 ARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFI 355 LE+ + S + +LL+ + + T G R + +PL D+ I R+++++ F+ Sbjct: 284 TLRALEVFQA-SSPQGMTLLQALGSTRTAGGRRRLRAWLRAPLLDAASIEARVNAVDTFV 342 Query: 356 QNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE 415 + P L ++ +L + D+ R +R+ R P+++A + + L D Sbjct: 343 RTPDLRAGVRALLYRAHDLERLAARVAARRATPREVAALARTLELLPQATELLAVQD--G 400 Query: 416 ELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRII 475 L G +L LP++L + + L+DD P DGG +RDG A LD R+ + I Sbjct: 401 LLGGVRARLTALPEAL-NLIRAALTDDPPLRATDGGLIRDGFHAELDALRAESLGHRAWI 459 Query: 476 ASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQ--TMSNLT 533 A+L+ + T I +LK+ NN +GY++EVT++ + D +RQ T+ + Sbjct: 460 AALETEERARTGIGSLKVGFNNVIGYYLEVTATHLPRVPGD--------YRQIATLKDRA 511 Query: 534 RFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALA 593 RFT +L + E I A +A +ELE F L +A+ ++L +A+ +A +D+ LA Sbjct: 512 RFTRPDLREREREIARAEGAAARLELEVFTELRDALAAHVDALTDAAGALAELDVVSTLA 571 Query: 594 ILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLW 653 LA E+++ RP + T ++ RHP+VE L F+ ND L ++ Sbjct: 572 DLAAERHWTRPETNADTRVELEQARHPVVEHAL----GDAFVPNDAHLDATR-----RVL 622 Query: 654 LLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTF 713 +LTGPNM GKST+LR AL ++ Q+GS+VPA A + I D + +R+G++D+LA GRSTF Sbjct: 623 VLTGPNMAGKSTYLRTVALCALLHQIGSFVPAQRARLPIFDSIHTRIGASDDLAGGRSTF 682 Query: 714 MVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFH 773 MVEM E A+IL+ AT +S ++LDEIGRGT++LDG +IA A +E+LH T L ATH+ Sbjct: 683 MVEMSELATILHAATARSLIVLDEIGRGTSSLDGQAIAQAALEHLHATGAFT-LFATHYF 741 Query: 774 ELTDLSKSLKRFHNATLQVSDSNE---GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVIS 830 ELT L L N L V+ E G+ F H+VIPG A SYG++V +LAGLP +V + Sbjct: 742 ELTRLDGELTGLVN--LHVAAEEEERGGLTFYHQVIPGAAAQSYGVEVARLAGLPASVTA 799 Query: 831 RAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTA 890 RA +L N D L + + L+L +++P+ A Sbjct: 800 RASGLLAAL------------------------NATGDTDSLRRDLV-TLDLTQLTPMDA 834 Query: 891 LKTLYA 896 LK L+A Sbjct: 835 LKLLHA 840 >gi|301167871|emb|CBW27456.1| putative DNA mismatch repair protein MutS [Bacteriovorax marinus SJ] Length = 891 Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust. Identities = 259/834 (31%), Positives = 438/834 (52%), Gaps = 55/834 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM Q+ ++K D LV +RMGDFYE+FFDDA AS+ L ITLT RGK IPM G Sbjct: 20 TPMMAQFYDVKKEYADHLVLFRMGDFYEVFFDDAKKASKLLNITLTHRGKLGDFPIPMAG 79 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P H A YI +L G ++AICEQ+E P EAK +V+R V ++V+PG + + Sbjct: 80 IPHHAAAVYIDRLSAFGLKVAICEQVEDPKEAK-----GIVKRAVTQVVSPGLPFDLEKA 134 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIF---KISTSNHDRLISDIMRIDPREIIFSEK 202 D ++ + ++ + +A ID +TG F K++T + + + + P+E I + Sbjct: 135 DSQDHKFIASAIKLEDAYYLAAIDFTTGEFSGHKLTTI--EDFLDKLRMLAPKEFICAMG 192 Query: 203 ELSHA-EYKSLFETLGNVAVAQPNVFFDHSISESRIA--------DYYNITTVDTFGSFS 253 + E +L LG + +F+ +E I D T + G Sbjct: 193 DWDEVKELDNLLNALGVLKTHLSKEYFEQKYTEIYIEKLIPAFKRDKVIATCHEILGPIG 252 Query: 254 QVE----KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS 309 + T A +I+ QM+++ + + + + LEIL + Sbjct: 253 ALSYYICSTQNAENFCHIRPFQMISE-----------KGHMKVTAPTLIGLEILPKSRET 301 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 + SLL +D + T G R + +PL D I+ R + +++F+ ++ +++ L Sbjct: 302 YKDSLLGFLDKTKTAMGSRNLKQVFTNPLNDLVAISDRQNFVSYFLDESDILESVREKLS 361 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP- 428 D+ R ++++ + D+ + +R+ + ++F P + K K+L Sbjct: 362 DVRDLERIMAKVSTNKSTAGDLINLAKAVRTYEELGDVF---SHPSAKFLSTLKKKELTS 418 Query: 429 -QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 ++L K + + ++D++ G +++G D D L + + L+ +Y EET Sbjct: 419 LRALSKRVENTINDEIGAALEKGNLIKEGCDQERDRLAKLSTNTANELLELEARYREETG 478 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 I+ L++K NN GYFIEV+ + + D F RQT+ N R+TT EL E I Sbjct: 479 IQKLRVKSNNVAGYFIEVSKTHTD------KVPDNFKRRQTLVNSERYTTEELTAFEKEI 532 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 +A +E E F+ L + + E + ++ S+ + ++D+ + A +A ++++ +P ++ Sbjct: 533 FSAKEKLERLEREIFKALISEVAENNNAIMMLSKSLGLLDVFQSFAWVAAQEDFTKPNLN 592 Query: 608 NSTNFIVKDGR-HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 +G HP+++ +K Q F+A+D L+ L+TGPNM GK+T Sbjct: 593 EKRKLTHLEGAWHPLIKSIIKDQ----FVAHDLMLN-----EECFFGLITGPNMAGKTTV 643 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +R+ A++ ++AQ+GSYVPA A++G+ D LFSR+G++D++ G+STFMVEM ETA IL Sbjct: 644 MREVAIVQLLAQVGSYVPAESANLGLCDYLFSRLGASDDILKGQSTFMVEMAETAEILRH 703 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT S +ILDE+GRGT+T DGLSIAW+ +E+ + L ATH+HEL ++ + L Sbjct: 704 ATENSLIILDEVGRGTSTYDGLSIAWSLVEHFVNQTKALTLFATHYHELIEMVEQLPGAK 763 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 N T++ + + + FL+++I A S+GI V KLAGLP +++ R+ +LKT E Sbjct: 764 NLTVETFNKDGDVQFLYRLIEEGASQSFGIYVAKLAGLPQSILERSTHLLKTLE 817 >gi|300712235|ref|YP_003738049.1| DNA mismatch repair protein MutS [Halalkalicoccus jeotgali B3] gi|299125918|gb|ADJ16257.1| DNA mismatch repair protein MutS [Halalkalicoccus jeotgali B3] Length = 889 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 265/824 (32%), Positives = 434/824 (52%), Gaps = 49/824 (5%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 ++ +++ +K L+ + GDFYE F DDA L + L + ++++ H G PM GVP Sbjct: 6 IVGEFLGLKEETDADLLAMQCGDFYEFFADDAELVAEELDLRVSEKSSH-GSSYPMAGVP 64 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 + Y++ L++ G+R+A+ EQ ++ + G+ R +VR+ TPGTL E + Sbjct: 65 LSELTPYLKALVERGYRVAVAEQYDT-----EDGHA----REIVRVATPGTLIE---TAA 112 Query: 148 TDSNYLMAVARIRTE-WAIAWIDISTGIFKISTSNHD----RLISDIMRIDPREII---- 198 D+ YL + R+ + + +A+ +++TG F ++ + R I++ R DP EI+ Sbjct: 113 EDARYLAGIVRVAEDCYGLAFAEVTTGRFLVTRIEGEDAAARAITECYRYDPVEILPGPD 172 Query: 199 FSEKELSHAEYKSLFE-TLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 E E A SL E T V + N F + + + + + T+ + G + Sbjct: 173 LREDE---AFLSSLAERTDAEVTRHEANAFAPGAATHT-TREQFGRETLSSLGLEPEGPA 228 Query: 258 TAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 AA A+ SY+ +T + P++ + D + NLEI T++G+ QSL Sbjct: 229 VRAAGAVLSYVAETGLGVLPSMTRLQPYGADDFASCDVTTQRNLEITETMTGAG-QSLFA 287 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 T+D+++T AGGRL E + P ++ R + + + + +++IL + D+ R Sbjct: 288 TVDHTVTSAGGRLLKEWLGRPRRSLGELRRRQECVTALSERALAREDLREILGEASDLER 347 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKND--LPEELRGAVEKL-KKLPQSLEK 433 SR G + + RD + + +L +D L VE+ ++ L + Sbjct: 348 LASRTTHGSADAGALLRARDSLALVPELADLIAGDDRLADSPLSKVVERPDREATVDLRE 407 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L L++D P R+GG + G DA+LDE +++ I L + + +L++ Sbjct: 408 ALDEGLANDPPKTLREGGLIERGYDANLDELVERHEEALEWIEELGPREKDAHGFAHLQV 467 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GY+I++ S A + D + +T+ N RF+T L + E I Sbjct: 468 DRNKTDGYYIQIGKSEAE------DVPDSYRQVKTLKNSVRFSTDALEEREREILRLEEQ 521 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 +E + F L + +++ L + + IA +D + A A E + RP ++ S Sbjct: 522 RGELEYDLFCELRERVAKRATLLQDVGRAIAELDALASFATHAVENRWRRPELEESRALD 581 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 ++ GRHP+VE+ S F+ ND L+ + + ++TGPNM GKST++RQ ALI Sbjct: 582 IEAGRHPVVEQ------STEFVPNDLSLT-----DEREFLIVTGPNMSGKSTYMRQVALI 630 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 V++AQ+GS+VPA A +G+VD +++RVG+ D LA GRSTFMVEM E ++IL+ AT S V Sbjct: 631 VLLAQVGSFVPAERARVGLVDGIYTRVGALDELAQGRSTFMVEMSELSNILHSATEDSLV 690 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ILDE+GRGTAT DG+SIAWAT EYLH R + L ATH+HELT L++ L R N + V Sbjct: 691 ILDEVGRGTATYDGISIAWATTEYLHNEVRAKTLFATHYHELTALAEHLPRVENVHVAVD 750 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILK 837 DS +G+ FL + G D SYG+ V +LAG+P V+SR+ ++L+ Sbjct: 751 DSGDGVTFLRTIREGPTDRSYGVHVAELAGVPGPVVSRSDEVLE 794 >gi|293321554|emb|CAQ52811.2| mutS [Pseudomonas avellanae] Length = 780 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 268/808 (33%), Positives = 429/808 (53%), Gaps = 41/808 (5%) Query: 101 IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIR 160 +G + ICEQI P +K V R VVR++TPGT++++ LL N + AV + Sbjct: 1 MGESVVICEQIGDPATSK-----GPVDRQVVRIITPGTISDEALLDERRDNLIAAVLGDK 55 Query: 161 TEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNV 219 + +A +DI++G F + + L++++ RI+P E++ + + L Sbjct: 56 RLFGLAVLDITSGNFSVLEIKGWENLLAELERINPVELLIPDDW-----PQGLPAEKRRG 110 Query: 220 AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAI-SYIKKTQMVNKPTI 278 A + F+ + + ++ + FG + AA + Y K+TQ P + Sbjct: 111 ARRRAPWDFERDSAHKSLCQQFSTQDLKGFGCETLTLAIGAAGCLLGYAKETQRTALPHL 170 Query: 279 GYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPL 338 E + T+ +D+A+R NLE+ LSG R+ +L +D T G RL + PL Sbjct: 171 RSLRHERLDDTVILDAASRRNLELDTNLSGGRDNTLQSVMDRCQTAMGTRLLTRWLNRPL 230 Query: 339 TDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR--LKIGR-----GEPKDI 391 D + + R SI F++ N +Q LK DV R L+R L+ R P+D+ Sbjct: 231 RDLSILLARQTSITCFLERYRFEN-LQPQLKEIGDVERILARICLRNARPREPGARPRDL 289 Query: 392 AVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGG 451 A +RD + + + D P L+ + P+ L L ++D+ P RDGG Sbjct: 290 ARLRDALSALPELQQAMNDLDAPH-LQQLAQTASTYPE-LADLLQRAINDNPPAVIRDGG 347 Query: 452 FLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSAS 511 L+ G DA LD+ +SL + + + + L+ + T + +LK+ +N GYFIE+ S A Sbjct: 348 VLKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLSHLKVGYNRVHGYFIELPSKQAE 407 Query: 512 VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIE 571 D +I RQT+ RF T EL + E++ +A + AL E +E L +I+ Sbjct: 408 QAPAD------YIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKMLYETLLEDLID 461 Query: 572 QSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSS 631 L + + +A +D+ LA A + P ++ GRHP+VE+ L S Sbjct: 462 HLAPLQDTAAALAELDVLSNLAERALNLDLNCPRFVAEPCMRIEQGRHPVVEQVL----S 517 Query: 632 KPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIG 691 PF+AND L +S ++ ++TGPNMGGKST++RQ ALIV++A +GS+VPA+ + Sbjct: 518 TPFVANDLALD-----DSTRMLIITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCELS 572 Query: 692 IVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIA 751 +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V++DE+GRGT+T DGLS+A Sbjct: 573 LVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLVDEVGRGTSTFDGLSLA 632 Query: 752 WATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIAD 811 WA E L + R L ATH+ ELT L +S +N L ++ NE I+FLH+V+PG A Sbjct: 633 WAAAECLAQL-RAYTLFATHYFELTVLPESEPLVNNVHLNATEHNERIVFLHRVLPGPAS 691 Query: 812 HSYGIQVGKLAGLPNTVISRAYDILKTFEKL-YHHNQKDMRLYYPEIQTKESKNNLSKND 870 SYG+ V +LAG+P VI+RA + L+ E H Q + P I + + + Sbjct: 692 QSYGLAVAQLAGVPGKVITRAKEHLQRLETTSLPHEQPRAKPGKPAI--PQQSDMFASLP 749 Query: 871 KLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++++ + +D+++P AL LY ++ Sbjct: 750 HPVLDELSKIKVDDLTPRQALDLLYTLQ 777 >gi|330718390|ref|ZP_08312990.1| DNA mismatch repair protein MutS [Leuconostoc fallax KCTC 3537] Length = 831 Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust. Identities = 287/869 (33%), Positives = 456/869 (52%), Gaps = 66/869 (7%) Query: 54 LFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIES 113 +F DDA+L ++ L +TLT R K+ +PM G+P H A +YI L+ G+++AI EQ+E Sbjct: 1 MFEDDAVLGAKILELTLTARNKNSDNPVPMAGIPHHAARNYIDILVDQGYKVAIVEQMED 60 Query: 114 PLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTG 173 P AK +V+R+VV+L+TPGT D + ++NYL AV +++A+ID+STG Sbjct: 61 PATAK-----GMVKRDVVQLITPGTKMTDGIGGERENNYLAAVIPSDKTFSLAYIDLSTG 115 Query: 174 IFKISTSNHDRL---ISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDH 230 K T+N RL + ++ ++ +E++ + + + L + +G + V + Sbjct: 116 ELK--TTNIARLPEVLDELDSLEVKEVVLLKDNGIEPQIQ-LIDKIGKRGIV---VSYTV 169 Query: 231 SISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVN----KPTIGYPEREDI 286 S S + + +DT +K+ ++YI TQ + P Y Sbjct: 170 QQSPSATISFLTQSLLDTD------QKSVTELLLNYIFDTQRRSLDHIVPATSYARL--- 220 Query: 287 QSTLFIDSAARSNLEILR-TLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKIN 345 S L D R NL+++ + + + SLL ID + T GGRL + + PL D I Sbjct: 221 -SFLKFDHNTRVNLDLVENSRTKKKAGSLLGLIDATKTAMGGRLLKQWLLKPLRDHHDIT 279 Query: 346 TRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINIL 405 RLD+I F + +Q LKS D+ R +R +G +++ ++ + + I Sbjct: 280 QRLDTIAAFQEQFFTRGALQDHLKSVYDLERLAARAAMGTMNARELIQLKRSLSAVPGIK 339 Query: 406 NLFLKNDLPEE--LRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDE 463 + ++LP E L ++L + L + + DD P R+G +RDG D +D Sbjct: 340 STL--SELPHENVLHQIADELDTM-LDLSGLIEEAIVDDPPVSVREGDIIRDGFDEKIDT 396 Query: 464 TRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRF 523 R + +++ + L+ K T I +LKI +N N GYFIEVT S+ + L++ R+ Sbjct: 397 YRQVLHDNQQWLGELESKERIATGINSLKIGYNKNFGYFIEVTKSNIAKLEEG-----RY 451 Query: 524 IHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVI 583 RQT++N RF T EL + E I A E E F + + L + I Sbjct: 452 ERRQTLTNAERFVTPELKEHERLIIEAQAKRTEREYELFVTIRERVKTNITRLQKLAGQI 511 Query: 584 AIIDISIALAILAKEQNYCRP-IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLS 642 A +D+ +LA +A Q++ RP + N ++ GRHP+VE L + F+AND L Sbjct: 512 ARLDVLASLADIADNQHFVRPTFVTNDDTVRIEKGRHPVVEALL---PNGDFVANDVYL- 567 Query: 643 CPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGS 702 DK + + L+TGPNM GKST++R+ ALIVI+AQMGS+VPA A + I D++F+R+G+ Sbjct: 568 ---DKQT-TIQLITGPNMAGKSTYMRELALIVILAQMGSFVPADKAELPIFDQIFTRIGA 623 Query: 703 ADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETN 762 +D+LA+G+STFMVEM E L +AT+ S ++ DE+GRGTAT DG+++A A IEYL + Sbjct: 624 SDDLATGQSTFMVEMAEANYALQEATHHSLILFDELGRGTATYDGMALAQAIIEYLDQHV 683 Query: 763 RCRGLLATHFHELTDLSKSLKRFHNATLQVS-DSNEGIIFLHKVIPGIADHSYGIQVGKL 821 + L +TH+HELT L+ N + + D N + FLH++ G AD SYGI V L Sbjct: 684 HAKTLFSTHYHELTVLAHQYPNIENVHVGAAEDENGELHFLHQIQAGPADKSYGIHVAAL 743 Query: 822 AGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFV------- 874 AGLP+ +I A IL E +Q+ + L +K N +S LFV Sbjct: 744 AGLPDGLIQNAEHILSRLE-----HQQPIDLDMQNNVSKPDANEMSDQTALFVVKDIDQS 798 Query: 875 -----EKIKCLNLDEMSPLTALKTLYAVK 898 +++ ++++ ++P+ AL L +K Sbjct: 799 TQAILDQLAKIDINNLTPIQALNQLAELK 827 >gi|110669043|ref|YP_658854.1| DNA mismatch repair protein MutS [Haloquadratum walsbyi DSM 16790] gi|121687125|sp|Q18FJ9|MUTS_HALWD RecName: Full=DNA mismatch repair protein mutS gi|109626790|emb|CAJ53258.1| DNA mismatch repair protein MutS2 [Haloquadratum walsbyi DSM 16790] Length = 932 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 274/900 (30%), Positives = 458/900 (50%), Gaps = 81/900 (9%) Query: 8 PQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLG 67 P+K+ + + +L TPM+ QY++ +PD+LV +++GDFYE F + A ++ Sbjct: 23 PEKMLTRRTEL-------TPMLSQYLDCCEAHPDALVLFQVGDFYEAFCEAATTVAQVCE 75 Query: 68 ITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVR 127 +TLT+R G M GVP+ A YI+ L+ R+AI EQ+E + LV Sbjct: 76 VTLTQREDSTGT-YRMAGVPIDNATSYIEALLSADFRVAIAEQVE-----EAEATSGLVD 129 Query: 128 RNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEW-------AIAWIDISTGIFKISTS 180 R V ++TPGT+T LL+ + YL AV+ ++ AIA +D+STG ++++ Sbjct: 130 RAVTNIITPGTVTNGDLLTDAAATYLGAVSITDSDGDASEMTGAIATVDVSTGACRVTSV 189 Query: 181 NHDRLISDIMRIDPREIIFS-EKELSHAEYKSL-FETLGNVAVAQPNVFFDHSISESRIA 238 HD++ ++ R+ P E++ E + E SL FET+ + F+ + + + Sbjct: 190 EHDQIYEELSRLRPAELLIGPEVDTKTIESSSLPFETMQTT---HNSGAFELATATQTLE 246 Query: 239 DYYNITTVDTFGSF-SQVEKTAAAAAISYIKKTQMVNKPT--IGYPEREDIQSTLFIDSA 295 Y VD +F S E+ A A + Y + TQ P + R + L +D+ Sbjct: 247 AY-----VDEPTAFLSSAERRAVGAVLDYAEYTQGDCGPLEYVSRIRRYKTDTALRVDAT 301 Query: 296 ARSNLEILRTLSGSRE---QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSIN 352 A +LE+ SR+ ++L++TID + + G R + PL D I TR D++ Sbjct: 302 AIQSLELF----DSRQPYGETLIETIDETSSALGRRTLESWLRRPLADHEAIKTRYDAVA 357 Query: 353 FFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI----LNLF 408 +NP+++ + + L D+ R +R + + +D+ + + S I + + Sbjct: 358 ALAENPLVVETLTEKLSHIYDLERLTARTAREQADARDMRSLLQSLDSIPEIKSALIEVL 417 Query: 409 LKNDLPEELRGAVEKLKKLPQSLE--KTL-SSMLSDDLPTFKRDGGFLRDGADASLDETR 465 + +LP E +E+L+ SL+ +TL + + D P DG + G + LD+ R Sbjct: 418 TETELPAE---TLEQLQAELDSLDDIRTLIDTAVCSDPPQTVTDGDVIAKGFNDDLDDIR 474 Query: 466 SLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIH 525 + + ++ L+ + E T I +L++ + GY+IEVT+ + + D + Sbjct: 475 EREEAGREWVSELETRERERTGIDSLEVGYTEVHGYYIEVTNPNLDHVP------DEYTR 528 Query: 526 RQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAI 585 RQT+ N RF T L E+ I A+N A +E E F + + ++ L + I Sbjct: 529 RQTLKNAERFYTPALKRREDEIIAASNRADKLEYELFCDIRAEVAAETSRLQAVADAIGR 588 Query: 586 IDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPN 645 +D ++ A +A Y RP I T ++ GRHP+VE+T + F+ N Sbjct: 589 LDALVSFATIAISHAYVRPEITADT-LAIEAGRHPVVEQTQAE-----FVPNGITF---- 638 Query: 646 DKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADN 705 G + ++TGPNM GKST++RQ A I I+AQ GS+VPA A I ++D++F+R+G++D+ Sbjct: 639 --EKGHIAMITGPNMSGKSTYMRQIAHICILAQAGSFVPADAAQIPVLDRIFTRIGASDD 696 Query: 706 LASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCR 765 ++ G STFM EM E IL+ AT S ++LDE+GRGT+T DG +IA AT+E++H R Sbjct: 697 ISGGESTFMREMSEMTDILHNATESSLILLDEVGRGTSTTDGRAIARATVEFIHNEIGAR 756 Query: 766 GLLATHFHELTDLSKSLKRFHNATLQV-----SDSNEGIIFLHKVIPGIADHSYGIQVGK 820 L TH+H+LT ++ SL N +V D++ + FLH+V G AD SYG++V K Sbjct: 757 TLFTTHYHDLTTVTGSLPSAFNLHFKVHRKTHPDNDASVTFLHRVTSGAADSSYGVEVAK 816 Query: 821 LAGLPNTVISRAY--------DILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKL 872 LAG+P V+ +A D + E+ HH+ + + +N S +D++ Sbjct: 817 LAGVPTPVVEQAQRYIHTEGEDYTEISEQGTHHHDELTHAEMVSVDHDNQQNQASDDDEI 876 >gi|94985637|ref|YP_605001.1| DNA mismatch repair protein [Deinococcus geothermalis DSM 11300] gi|94555918|gb|ABF45832.1| DNA mismatch repair protein MutS [Deinococcus geothermalis DSM 11300] Length = 880 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 292/894 (32%), Positives = 457/894 (51%), Gaps = 74/894 (8%) Query: 27 PMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI--PMC 84 PM+ QY+ ++ +PD L+ +++GDFYE F +DA SR LGI LT + KD PM Sbjct: 43 PMLEQYVALRDAHPDFLLLFQVGDFYETFGEDAERLSRLLGIALTHKSS---KDFSTPMA 99 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVP+ T + +++L+ G R+A+ +Q+E P LV R V +L+TPGT+TE++ Sbjct: 100 GVPLRTLDSNVERLLAAGVRVAVADQVEEP-------GSGLVERKVTQLLTPGTVTEERH 152 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREIIFSEK 202 L+ D NYL AVA +A+A +D+STG F+ + + H R L ++ R RE++ + + Sbjct: 153 LT-ADENYLGAVA-TGDGYALALLDVSTGEFRCA-AFHTRTALYDELARHRAREVLLAPE 209 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 +A + F+ V ++ N FD + + + GS + V A A Sbjct: 210 LSGNAALLADFQARFPVMLSPAN--FDEENARQELEAVLG-EVPGSLGSAALVR--ACGA 264 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 + Y + TQ + R + + + + AA LE+ T + +L+ ++ + Sbjct: 265 VLGYARLTQQGRLEMVRRVVRFEPGAHMRLSDAAVRALEVF-TPQSPQGMTLMDVLNETR 323 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G R + +PL D I RLD++ + P L ++ +L + D+ R +R+ Sbjct: 324 TAGGRRRLRAWLRAPLLDELSIRARLDAVETLTRAPDLRGAVRALLYRAHDLERLSARVA 383 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 R P+++A + + +NL D L G +L LP + + + L DD Sbjct: 384 TRRASPREVASLARTLELLPEAMNLLGDQD--GLLAGIRARLGALPDVV-TLIRAALVDD 440 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P +GG +RDG A LD RS + +A L+ T I +LK+ NN GY+ Sbjct: 441 PPLRVGEGGLIRDGFHAELDGLRSEALGHRAWLAELEASERARTGISSLKVGFNNVFGYY 500 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQ--TMSNLTRFTTLELIDLENRITNATNSALLIELE 560 +EV+ + S + D +RQ T+ + RFT +L + E I +A +ELE Sbjct: 501 LEVSGPNLSKVPAD--------YRQIATLKDRARFTRPDLREREREIARLEAAAGRLELE 552 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F L + + +E+L A+ +A +D+ ALA +A + RP +V+ RHP Sbjct: 553 VFTELRDGLSAHAEALAEAAGALAELDVLAALAEIAVNWGWVRPQTVAGHARLVQ-ARHP 611 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VE+ + F+ ND +L P+ LLTGPNM GKST+LR AL ++ Q+G Sbjct: 612 VVERA----TGGRFVPNDAELG-PHRHT----LLLTGPNMAGKSTYLRTVALCALLHQIG 662 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 ++VPA +A + I D + +R+G++D+LA GRSTFMVEM E A+IL+ T++S VILDE+GR Sbjct: 663 AFVPADHAELPIYDAIHTRIGASDDLAGGRSTFMVEMSELAAILHGVTHRSLVILDEVGR 722 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV-SDSNEGI 799 GT+TLDGL+IA A +E+LH L ATH+ ELT L L N + D G+ Sbjct: 723 GTSTLDGLAIAQAALEHLHAAG-AHTLFATHYFELTRLEADLPGLVNLHVAAEEDEGSGL 781 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQT 859 F H+VIPG A SYG++V +LAGLP V SRA +L Sbjct: 782 TFYHQVIPGAARQSYGVEVARLAGLPAPVTSRAARLLTAL-------------------- 821 Query: 860 KESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTLEKYSTDEDSEP 913 N +D+ + ++ L+L ++PL AL+ L+ +A +S ED P Sbjct: 822 -----NAGGDDRKLLRELAALDLGRLTPLQALEVLHRWQAEARGSFSP-EDRGP 869 >gi|13399878|pdb|1FW6|A Chain A, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex gi|13399879|pdb|1FW6|B Chain B, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex Length = 768 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 267/811 (32%), Positives = 422/811 (52%), Gaps = 81/811 (9%) Query: 27 PMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI--PMC 84 P+++QY+E++ PD L+ +++GDFYE F +DA +R LG+ LT + KD P Sbjct: 15 PLLQQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTS---KDFTTPXA 71 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G+P+ Y ++L+K G R+A+ +Q+E EA+ LVRR V +L+TPGTL ++ L Sbjct: 72 GIPLRAFEAYAERLLKXGFRLAVADQVEPAEEAE-----GLVRREVTQLLTPGTLLQESL 126 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 L P ++NYL A+A W +A++D+STG FK + + L ++ R P E++ + + Sbjct: 127 L-PREANYLAAIA-TGDGWGLAFLDVSTGEFKGTVLKSKSALYDELFRHRPAEVLLAPEL 184 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 L + + F F +SE+ + G + A A Sbjct: 185 LENGAFLDEFRKR-----------FPVXLSEA---------PFEPEGEGPLALRRARGAL 224 Query: 264 ISYIKKTQ---MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 ++Y ++TQ + +P Y D + + A LE+ L G + +L +D Sbjct: 225 LAYAQRTQGGALSLQPFRFY----DPGAFXRLPEATLRALEVFEPLRG--QDTLFSVLDE 278 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G RL + PL D + RLD + F++ L ++++L D+ R +R Sbjct: 279 TRTAPGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALREGVRRLLYRLADLERLATR 338 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP--QSLEKTLSSM 438 L++GR PKD+ +R RS + IL ELR + + LP L++ L + Sbjct: 339 LELGRASPKDLGALR---RS-LQILP---------ELRALLGEEVGLPDLSPLKEELEAA 385 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 L +D P +GG +R+G D LD R+ + L+ + E T I LK+ +N Sbjct: 386 LVEDPPLKVSEGGLIREGYDPDLDALRAAHREGVAYFLELEERERERTGIPTLKVGYNAV 445 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY++EVT + K+ + QT+ + R+T E + E + E Sbjct: 446 FGYYLEVTRPYYERVPKE------YRPVQTLKDRQRYTLPEXKEKEREVYRLEALIRRRE 499 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 E F + Q+E+L A++++A +D+ ALA +A Y RP + ++ GR Sbjct: 500 EEVFLEVRERAKRQAEALREAARILAELDVYAALAEVAVRYGYVRPRFGDRLQ--IRAGR 557 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ + F+ ND + + +L L+TGPN GKSTFLRQ ALI ++AQ Sbjct: 558 HPVVERRTE------FVPNDLEXAH-------ELVLITGPNXAGKSTFLRQTALIALLAQ 604 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA AH+ + D +++R+G++D+LA G+STF VE E A IL +AT S V+LDE+ Sbjct: 605 VGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFXVEXEEVALILKEATENSLVLLDEV 664 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT++LDG++IA A E LHE R L ATH+ ELT L L R N + + G Sbjct: 665 GRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYFELTAL--GLPRLKNLHVAAREEAGG 721 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVI 829 ++F H+V+PG A SYG++V AGLP V+ Sbjct: 722 LVFYHQVLPGPASKSYGVEVAAXAGLPKEVV 752 >gi|11514356|pdb|1EWQ|A Chain A, Crystal Structure Taq Muts Complexed With A Heteroduplex Dna At 2.2 A Resolution gi|11514357|pdb|1EWQ|B Chain B, Crystal Structure Taq Muts Complexed With A Heteroduplex Dna At 2.2 A Resolution Length = 765 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 267/811 (32%), Positives = 422/811 (52%), Gaps = 81/811 (9%) Query: 27 PMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI--PMC 84 P+++QY+E++ PD L+ +++GDFYE F +DA +R LG+ LT + KD P Sbjct: 15 PLLQQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTS---KDFTTPXA 71 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G+P+ Y ++L+K G R+A+ +Q+E EA+ LVRR V +L+TPGTL ++ L Sbjct: 72 GIPLRAFEAYAERLLKXGFRLAVADQVEPAEEAE-----GLVRREVTQLLTPGTLLQESL 126 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIFSEKE 203 L P ++NYL A+A W +A++D+STG FK + + L ++ R P E++ + + Sbjct: 127 L-PREANYLAAIA-TGDGWGLAFLDVSTGEFKGTVLKSKSALYDELFRHRPAEVLLAPEL 184 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA 263 L + + F F +SE+ + G + A A Sbjct: 185 LENGAFLDEFRKR-----------FPVXLSEA---------PFEPEGEGPLALRRARGAL 224 Query: 264 ISYIKKTQ---MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 ++Y ++TQ + +P Y D + + A LE+ L G + +L +D Sbjct: 225 LAYAQRTQGGALSLQPFRFY----DPGAFXRLPEATLRALEVFEPLRG--QDTLFSVLDE 278 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G RL + PL D + RLD + F++ L ++++L D+ R +R Sbjct: 279 TRTAPGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALREGVRRLLYRLADLERLATR 338 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP--QSLEKTLSSM 438 L++GR PKD+ +R RS + IL ELR + + LP L++ L + Sbjct: 339 LELGRASPKDLGALR---RS-LQILP---------ELRALLGEEVGLPDLSPLKEELEAA 385 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 L +D P +GG +R+G D LD R+ + L+ + E T I LK+ +N Sbjct: 386 LVEDPPLKVSEGGLIREGYDPDLDALRAAHREGVAYFLELEERERERTGIPTLKVGYNAV 445 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY++EVT + K+ + QT+ + R+T E + E + E Sbjct: 446 FGYYLEVTRPYYERVPKE------YRPVQTLKDRQRYTLPEXKEKEREVYRLEALIRRRE 499 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 E F + Q+E+L A++++A +D+ ALA +A Y RP + ++ GR Sbjct: 500 EEVFLEVRERAKRQAEALREAARILAELDVYAALAEVAVRYGYVRPRFGDRLQ--IRAGR 557 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ + F+ ND + + +L L+TGPN GKSTFLRQ ALI ++AQ Sbjct: 558 HPVVERRTE------FVPNDLEXAH-------ELVLITGPNXAGKSTFLRQTALIALLAQ 604 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GS+VPA AH+ + D +++R+G++D+LA G+STF VE E A IL +AT S V+LDE+ Sbjct: 605 VGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFXVEXEEVALILKEATENSLVLLDEV 664 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT++LDG++IA A E LHE R L ATH+ ELT L L R N + + G Sbjct: 665 GRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYFELTAL--GLPRLKNLHVAAREEAGG 721 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVI 829 ++F H+V+PG A SYG++V AGLP V+ Sbjct: 722 LVFYHQVLPGPASKSYGVEVAAXAGLPKEVV 752 >gi|317495810|ref|ZP_07954173.1| DNA mismatch repair protein MutS [Gemella moribillum M424] gi|316913987|gb|EFV35470.1| DNA mismatch repair protein MutS [Gemella moribillum M424] Length = 881 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 262/804 (32%), Positives = 446/804 (55%), Gaps = 55/804 (6%) Query: 43 LVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIG 102 +FYR+GDFYELFF+DA AS+ L ITLT R K +PMCGVP H A +YI L+ G Sbjct: 2 FLFYRLGDFYELFFEDATRASKILEITLTARDGGAEK-VPMCGVPFHAAANYIDVLVNNG 60 Query: 103 HRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTE 162 +++AICEQ+ P G +V R VV+++TPGT + + ++N+L + + Sbjct: 61 YKVAICEQVSEP------GQGKIVERKVVQVITPGTYMNYK--NYDENNFLASAYKKDGN 112 Query: 163 WAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREII-FSEKELSHAEYKSLFETLGNVA 220 A+ DI TG + + D L +I+R + +EII ++EL+ + Y + E N+ Sbjct: 113 IYFAFCDIMTGDSRCTILKTMDDLQDEILRNNIKEIITIKDQELNVSAYITKVEVDENIE 172 Query: 221 VAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGY 280 + + ++S+S + NI + YI+KTQ + ++ Sbjct: 173 KEKTS-----NLSDSNLRICCNIL-------------------LDYIEKTQNKDVNSLKN 208 Query: 281 PEREDIQSTLFIDSAARSNLEILRTLS-GSREQSLLKTIDYSITGAGGRLFAERIASPLT 339 E +++ + + NLE+ + ++ G ++ SLL ID + T AG R + + +PL Sbjct: 209 FEVYFKDKFVYMTNYSLKNLEVTQNMANGGKKGSLLSIIDKTSTAAGARKLKKWLENPLL 268 Query: 340 DSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIR 399 + +I R + + F+++ ++ LK D+ R +++ PK++ ++ + Sbjct: 269 NLKEIEHRQEIVGDFVKHYFEKADVKTNLKEVYDLERISTKVSYNIVSPKELLNLKKTLE 328 Query: 400 SGINILNLFLKNDLPE--ELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGA 457 +I N+ L + + E+ +++L+ L + LE T++ + ++G ++ G Sbjct: 329 KIPSIKNILLSFNSKKLVEIANKIDELEDLHEYLEVTINEEAGQTV----KEGNVIKLGF 384 Query: 458 DASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDL 517 ++ LD ++ RI+ ++ + T IKNLK+ +N GYFIE++ V + + Sbjct: 385 NSELDSYKNASKNGNRILLEIEEREKNRTGIKNLKVGYNKIFGYFIEISK----VGLRTI 440 Query: 518 ESKDRFIHR-QTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESL 576 + + HR QT+SN RF + EL ++E I N+ +EL F+ + I L Sbjct: 441 DPTELGYHRKQTLSNCERFISEELKEVEEHIVNSKAKIEELELLLFQEVKMKIHSFIPRL 500 Query: 577 DNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIA 636 + +++ ID+ ++L+ +A+E +Y +P +N + +GRHPIVE+ + S +I+ Sbjct: 501 QRVANILSDIDVFVSLSDVAEEYSYTKPKFNNDNIIDIIEGRHPIVERNV---SDDGYIS 557 Query: 637 NDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKL 696 NDC + N+ + L+TGPNM GKST++RQ ALIVI+AQ+GS+VPA+ A++ I DK+ Sbjct: 558 NDCKVDKDNN-----ILLITGPNMSGKSTYMRQLALIVILAQIGSFVPATSANLPIFDKI 612 Query: 697 FSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIE 756 F+R+G++D+LA G+STFMVEMIE + L ++T S +I DEIGRGT+T DG+++A + +E Sbjct: 613 FTRIGASDDLAGGKSTFMVEMIEAKNALVESTANSLLIFDEIGRGTSTYDGIALAQSILE 672 Query: 757 YLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGI 816 Y++E +C+ L +TH+HELT L + N + + + +IFL+K+ G + SYGI Sbjct: 673 YINEKIKCKTLFSTHYHELTKLENRMSGIKNIHVSAKEDHGKLIFLYKINDGPIEKSYGI 732 Query: 817 QVGKLAGLPNTVISRAYDILKTFE 840 V +LA LP VI A +ILK E Sbjct: 733 HVAQLAHLPEEVIVVANNILKELE 756 >gi|292654720|ref|YP_003534617.1| DNA mismatch repair protein MutS [Haloferax volcanii DS2] gi|291372283|gb|ADE04510.1| DNA mismatch repair protein mutS [Haloferax volcanii DS2] Length = 924 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 265/824 (32%), Positives = 420/824 (50%), Gaps = 55/824 (6%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 ++ Q++ +K L+ + GDFYE F DDA R L + ++++ H G PM GVP Sbjct: 6 IVGQFLSLKEETDADLLAMQCGDFYEFFADDAETVGRELDLKVSQKSSH-GSSYPMAGVP 64 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 ++ Y++ L++ G+R+A+ +Q E+ + G+ +RR V R+VTPGTL E S Sbjct: 65 LNDLTPYLKALVERGYRVAVADQYET-----ESGD---LRREVKRVVTPGTLLE---TSR 113 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKELSH 206 D+ +L AV +A+ DI+TG F ++ + D +++ R P E+ L Sbjct: 114 ADAQFLAAVVTDGDGVGLAFSDITTGQFLVTEAATVDDAAAELYRFAPVEV------LPG 167 Query: 207 AEYKSLFETLGNVAVAQPNVF-------FDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 E +S ETL + A F F + + + + +TVD+ G S + A Sbjct: 168 PELRSDDETLSRLREATDASFSLFATEAFAPGRARHAVREQFGASTVDSVGLDSDLATRA 227 Query: 260 AAAAISYIKKT-----QMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSL 314 A ++Y+++T + + + + +P L +D+ + NLE+ T+ G R SL Sbjct: 228 AGGVLAYVEETGAGVLRSMTRLQVYHP-----SDLLELDATTQRNLELTETMHGDRSGSL 282 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 TID+++T GGRL E + P D ++ R D++ + ++++L + D+ Sbjct: 283 FDTIDHTVTSPGGRLLREWLTRPRRDRDELARRHDAVESLASAALARERVREVLDGAYDL 342 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAV--EKLKKLPQSLE 432 R SR G ++ +RD + + + +L + V + L Sbjct: 343 ERLASRSASGSAGASELLSVRDTLSVLPALADAIEGTELADSPLAEVVSRPDRDAAADLR 402 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 L+ L++D P GG + G D LD+ + +K + +L + + + ++ Sbjct: 403 TDLADALAEDPPKTVTQGGLFQTGYDDELDDLIERHESAKSWLDTLADREKRDHGLSHVT 462 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 + N GY+I+V S A + D + +T+ N RF T EL + E I Sbjct: 463 VDRNKTDGYYIQVGKSVAD------QVPDHYRQIKTLKNSKRFVTEELEEKEREILRLEE 516 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 + +E E FE L + +E L + + IA +D +LA A + RP + + Sbjct: 517 ARGDLEYELFEDLRERVARHAELLQDVGRTIAEVDALASLATHAAGNGWTRPELTEAGAL 576 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 ++ GRHP+VE T F+ ND + D G L ++TGPNM GKST++RQ AL Sbjct: 577 DIEAGRHPVVETTTD------FVPNDLRM----DDERGFL-IVTGPNMSGKSTYMRQAAL 625 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 I ++AQ+GS+VPA A +G+VD +++RVG+ D LA GRSTFMVEM E ++IL+ AT S Sbjct: 626 ITLLAQVGSFVPARSATVGVVDGIYTRVGALDELAQGRSTFMVEMQELSNILHSATEDSL 685 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 VILDE+GRGTAT DG+SIAWA EYLH R + L ATH+HELT L+ L R N + Sbjct: 686 VILDEVGRGTATYDGISIAWAATEYLHNEVRAKTLFATHYHELTSLADHLDRVANVHVAA 745 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 + + + FL V+ G D SYGI V LAG+P V+ RA D+L Sbjct: 746 DERDGDVTFLRTVVDGPTDRSYGIHVADLAGVPRPVVDRAGDVL 789 >gi|195997229|ref|XP_002108483.1| hypothetical protein TRIADDRAFT_51434 [Trichoplax adhaerens] gi|190589259|gb|EDV29281.1| hypothetical protein TRIADDRAFT_51434 [Trichoplax adhaerens] Length = 954 Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust. Identities = 285/853 (33%), Positives = 458/853 (53%), Gaps = 68/853 (7%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD--IPMCG 85 M +QY+ IK+ D L+ +++G FYEL+ DA A+ + L+ K +G + + + G Sbjct: 50 MFQQYLHIKAQYSDCLLLFQVGGFYELYNQDAHAAAGKTELFLSHH-KKMGNNTYVDLAG 108 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P++ + ++ KL G R+A+C Q +S ++ + N LV R V ++VTPGT + Sbjct: 109 FPIYALDAWLAKLTGHGFRVAVCNQTDSKIDTGR--NSKLVHRQVTQVVTPGTF-----I 161 Query: 146 SPTDSN--YLMAVAR-IRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREII---- 198 +P N YLMAV + + I+W+DISTG F+++T N L ++ RI+P EII Sbjct: 162 NPMQENASYLMAVCQGPGHQLGISWVDISTGDFQLTTVNVGNLGEELARINPVEIICYQD 221 Query: 199 --------FSEKELSHA--EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDT 248 F++ + A + ++ L + + D+++ + A + +T Sbjct: 222 MQNLLNKYFNQNDSMQAIPSFAGKYDQLSLLPGFRLTPLKDNALEDDIWATMRDNGLKNT 281 Query: 249 FGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-- 306 S +E++ + Y+ T+ + P+ I + ID A+R +LE+L+ L Sbjct: 282 --QISSIEESTIKMLLKYLTDTRGRHIIKTLTPKHYSIDDHMSIDPASRKSLELLQPLHN 339 Query: 307 --SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPI 364 S R ++LL ID ++T AG R ++SPLTD TKIN RLD + +F + + I Sbjct: 340 DASSGRARTLLHIIDNTVTSAGRRYLKADLSSPLTDITKINKRLDEVTYFYHHLTITKSI 399 Query: 365 QKILKSSPDVPR---SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAV 421 ILK+ D+ R + S G ++ + + +L+ L ND LR + Sbjct: 400 CDILKTCGDMERLVQAFSTNMANVGHVIKLSQVLPNTQMLHQVLDENLTND--HSLRELI 457 Query: 422 EKLKKLPQSLEK-TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 +L P+S+++ +L L + T + F G D D+ RS + + + L+ Sbjct: 458 NQLP--PRSIDRQSLIKYLQGIVTTDDDETNFPAIGVDDKCDQIRSEINALHQQVVRLKD 515 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFT--TL 538 + L+I +LGY + + + L+ + + + S + FT L Sbjct: 516 NFINLMPSGKLEIY--KDLGYAYSLPKAESKNLQSTFNDSNVMMVKTKASRIL-FTDEKL 572 Query: 539 ELIDLENRITNATNSALLIELESFEILS--NAIIEQSESLDNASQVIAIIDISIALAILA 596 +LI++E R N+A L + ++ +L N I + L +QV+A +D++ +LAI A Sbjct: 573 QLINIELR----RNTAKLNQRKNEFLLHLFNKITLSIDWLKRIAQVVARLDVACSLAIAA 628 Query: 597 KEQNYCRPIIDNSTN--FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWL 654 K+ + RP D+ N F V GRHP++E T SS +I NDC+L + S ++WL Sbjct: 629 KDGKFIRPTFDDEENQLFQVVAGRHPVIESTTYDSSS--YIPNDCNL-----RPSDRIWL 681 Query: 655 LTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFM 714 LTGPNM GKST+LRQNA+I I+AQ+GSYVPA AH+ IVD+LF+R+GS+D++ GRSTFM Sbjct: 682 LTGPNMAGKSTYLRQNAIISILAQIGSYVPADKAHLSIVDRLFTRIGSSDSIIEGRSTFM 741 Query: 715 VEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHE 774 EM+ETA + AT +S VILDEIGRGTA DG++IAWA IEYLH+ +CR L ATH+H+ Sbjct: 742 TEMLETAYFTSHATERSLVILDEIGRGTAMYDGMAIAWAVIEYLHDIVKCRCLTATHYHQ 801 Query: 775 LTDL------SKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTV 828 L+ + S + A+ V D N + LHKV+PG +S GI++ +AG+P+ + Sbjct: 802 LSRMVNDNLSCSSSYQMLTASKGVIDQN-SLTLLHKVVPGHCQNSLGIEIADMAGIPSPI 860 Query: 829 ISRAYDILKTFEK 841 I RA ++ ++ K Sbjct: 861 ILRAKELRESRAK 873 >gi|110667421|ref|YP_657232.1| DNA mismatch repair protein MutS [Haloquadratum walsbyi DSM 16790] gi|109625168|emb|CAJ51588.1| DNA mismatch repair protein MutS1 [Haloquadratum walsbyi DSM 16790] Length = 931 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 278/870 (31%), Positives = 442/870 (50%), Gaps = 58/870 (6%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 +S ++ ++ +++ L+ + GDFYE F +DA L S L +T++++ H G PM Sbjct: 2 TSQGIVDEFFSLRAETDADLLTMQCGDFYEFFAEDAELVSAELDLTVSEKSSH-GSSYPM 60 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL--TE 141 GVP+ Y++ L++ G+R+A+ +Q E+ G+ R + R+VTPGTL T+ Sbjct: 61 AGVPIDDLTPYLKSLVERGYRVAVADQYEA-----DDGDHY---RRISRVVTPGTLLSTD 112 Query: 142 DQLLSPTDSNYLMAVA-------RIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRID 193 D D+ Y+ AV T IA+ +++TG F I ++ + +++ R D Sbjct: 113 D-----ADARYIAAVVGDLTATETTETTIGIAFAEVTTGSFFIGDVADAETAYAELTRFD 167 Query: 194 PREIIFSEKELSHAEY-KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSF 252 P EI+ + E+ + L + + F + +++ + T +D+ Sbjct: 168 PVEILPGPTVRNADEFIRRLRDGTDATVSSFETAAFALGRARHILSEQFGTTAIDSLNIE 227 Query: 253 SQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR-- 310 + V AA A ++YI +T + I + D + L +D+ R NLE+ T+ G R Sbjct: 228 TDVAIQAAGAILTYIDETDTGVRAAITRLQPLDSDTHLALDTTTRRNLELTETMHGDRGG 287 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 + +LL TID++ T AG R E I P + T+I RLD I + P+ I + L Sbjct: 288 DGTLLGTIDHTATSAGHRQLREWIMRPQREQTEITRRLDCIEALVDAPLARERIAETLNG 347 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEE--LRGAVEKLKKLP 428 S D+ R +R R + D+ IR+ + + + ++ L E ++ + Sbjct: 348 SYDLERLAARCISERADATDLLRIRETLEILPTLDEVITESILSESPLMQVVTRPTEDTV 407 Query: 429 QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 + + L++ L D+ P RDGG + G DA LD R + ++ + L + E + Sbjct: 408 KVVRDELTAALVDEPPKTIRDGGLFQYGYDAELDSLRERHETAQEWMDKLAQRETETHNL 467 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 +L + N G++I+V S A + + + +T+ N RF T EL + E I Sbjct: 468 NHLSVDRNKTDGHYIQVGKSVAD------QVPEHYREIKTLKNSKRFKTDELAERERDIL 521 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 S +E E F L I + + L QVIA ID +LA A E ++ RP + Sbjct: 522 RLEESRGEMEYELFCELREQIADYAAMLQTVGQVIAEIDALHSLATHAVENDWTRPTLRA 581 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 ++ GRHP+VE+T + F+ ND L +++N L+TGPNM GKST+LR Sbjct: 582 DHTVDIEAGRHPVVEQTTE------FVPND--LQLEDERN---FLLVTGPNMSGKSTYLR 630 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q ALI ++A GS+VPA+ A IG VD +++RVG+ D LA GRSTFMVEM E + IL+ A+ Sbjct: 631 QVALITLLAHAGSFVPAAAATIGAVDGIYTRVGALDELAQGRSTFMVEMQELSKILHSAS 690 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC----RGLLATHFHELTDLSKSLKR 784 ++S VILDE+GRGTAT DG+SIAWA EYL R L ATH+HELT L+ + Sbjct: 691 SESLVILDEVGRGTATYDGISIAWAATEYLSAAQSTAPSPRVLFATHYHELTTLADRIAG 750 Query: 785 FHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF---EK 841 N + + N + FL V G AD SYGI V +LAG+P+ V++RA D+L T E Sbjct: 751 VSNVHVAAEERNGDVTFLRTVESGPADRSYGIHVAELAGVPDPVLTRARDVLSTLRADEA 810 Query: 842 LYHHNQKDMRLYYPEIQTKESKNNLSKNDK 871 + Q + + ++ + N++ DK Sbjct: 811 IEVETQN-----HADTSKRDQEENMTGGDK 835 >gi|325185282|emb|CCA19770.1| DNA mismatch repair protein mutS putative [Albugo laibachii Nc14] Length = 890 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 279/861 (32%), Positives = 440/861 (51%), Gaps = 117/861 (13%) Query: 83 MCGVPVHTANHYIQKLI-KIGHRIAICEQIESPLEA------KKRGNK-------SLVRR 128 MCG P+++ + Y++KL+ G ++AIC QI+ P A +RG K S++ R Sbjct: 1 MCGFPINSLDSYLEKLVMHHGLKVAICNQIK-PKNAIYHNGNHRRGKKASAKLEPSIMDR 59 Query: 129 NVVRLVTPGTLTEDQLLSPTDSNYLMAV-----ARIRTEWAIAWIDISTGIFKISTSNHD 183 +VR+VTPG+L E+ +L P ++NYL A+ ++ AW D+STG F+ +++ D Sbjct: 60 RIVRVVTPGSLVEESMLKPEENNYLAALYTPLQGDENRKYGFAWADLSTGEFRSTSTTID 119 Query: 184 RLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISES------RI 237 ++ + ++R PREI L TL + + ++ S RI Sbjct: 120 QVANLLIRCSPREI--------------LIPTLDDTPDSSLEAILHEALPPSCMKTYRRI 165 Query: 238 ADYYNITTVD-----TFGSFSQVEKTAAAAAISYIKKTQMVNKP-TIGYPEREDIQST-- 289 + ++++ T D + + +VE +A A + YI+ N + G + + + Sbjct: 166 SSFHSVETEDRQLLTSIAAQDEVEAFSANAIVDYIQFAYTQNSGISAGLKQLRHVDNMDH 225 Query: 290 LFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLD 349 + ID +A +LE+ +LSG + SL TI+ ++T AG RL A +ASPL D I R D Sbjct: 226 MVIDHSAWKSLELSTSLSGDKSSSLFYTINKTVTAAGSRLLASHLASPLLDIETIRDRQD 285 Query: 350 SINFFIQNPILI-NPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF 408 ++ +F +LI P++K L + D+ RSL R+ + G P+D+ I + + I L Sbjct: 286 TVQYFSSQELLILKPLRKQLANMCDLERSLQRITVYMGTPRDLRNIASSVEKAVKIAGLM 345 Query: 409 LKNDLP---------EELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRD-----GGFLR 454 + + P G E L +EK +++ D + R F+R Sbjct: 346 MSSRPPNANYPRLLTHHCNGKREHTGLLGL-VEKIQAAIYDDSSESMGRSYLNAKHNFVR 404 Query: 455 DGADASLDETRSLR-----------DQSKRIIAS---LQLKYAEETKIKNLKIKHNNNLG 500 G LDE R++ + SK I + LQ KY + ++ + G Sbjct: 405 SGYSKELDEWRAIAMISTQTQGVSPEYSKSIDTTKQTLQQKYRSLLRSTRARVLYQTGRG 464 Query: 501 YFIEVTSSSASVLKKDLESK--------DRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 +FIE++ L ++ + K D+ I Q++ RF T EL L + I A Sbjct: 465 FFIELSVDEYKRLVRERQEKAHESVEPLDQLILLQSLKTTMRFRTEELSQLNDAIIEAEE 524 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 +E + F+ L + +++QS+S+ + ++ +AI+D+ + A +A + +Y RP+ID S Sbjct: 525 RVHELESQIFDDLVDFVLDQSDSIRSIAETMAILDVLSSHAQVALDCHYTRPLIDTSREI 584 Query: 613 IVKDGRHPIVEKT------------LKQQSSKPFIANDCDL-SC--PNDKNSGKLWLLTG 657 ++DGRH +VE + + F+ N L SC P G LTG Sbjct: 585 HIEDGRHCVVEAAHWRGRNNSLSRSVSSSLPRAFVPNSLHLQSCTEPQGNAIGSCCFLTG 644 Query: 658 PNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEM 717 PNMGGKSTFLRQNA IVI+AQMG +VPA YA IG+VD+LF RVGSAD+LAS +STFM+EM Sbjct: 645 PNMGGKSTFLRQNAQIVILAQMGCFVPARYARIGLVDQLFCRVGSADDLASDKSTFMIEM 704 Query: 718 IETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHF----- 772 ETASIL AT +S VI+DE+GRGT+ DG++IA A +E L R R L ATH+ Sbjct: 705 EETASILGHATARSLVIMDEVGRGTSVEDGIAIAGAVLETLC-LQRIRTLFATHYTILPQ 763 Query: 773 ---HELTDLSKSLKRFHNATLQVSD-------SNEGIIFLHKVIPGIADHSYGIQVGKLA 822 H ++SK L+ F +++ S+ + F H+V+PG+A SYG+ LA Sbjct: 764 LLSHANANVSKMLQLFRMEAVEMDSTRKDLGTSHHPLAFTHRVVPGLASRSYGLNTATLA 823 Query: 823 GLPNTVISRAYDILKTFEKLY 843 G P+ V+ RA +L+ + + Y Sbjct: 824 GCPSRVVMRANQLLQLYRQQY 844 >gi|284166482|ref|YP_003404761.1| DNA mismatch repair protein MutS [Haloterrigena turkmenica DSM 5511] gi|284016137|gb|ADB62088.1| DNA mismatch repair protein MutS [Haloterrigena turkmenica DSM 5511] Length = 895 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 263/829 (31%), Positives = 421/829 (50%), Gaps = 47/829 (5%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + +T ++ ++ +K L+ + GDFYE F +DA S L + ++++ H G Sbjct: 1 MTEATGIVGEFFSLKEDTDADLLAMQCGDFYEFFGEDAETVSDELDLKVSQKSSH-GSSY 59 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PM GVP+ Y++ L++ G+R+A+ +Q E+ S R +VR+VTPGTL E Sbjct: 60 PMAGVPIDDLTPYLKALVERGYRVAVADQYET---------DSGHAREIVRVVTPGTLLE 110 Query: 142 DQLLSPTDSNYLMAVARIRTEWA------IAWIDISTGIFKISTSNHDRL-ISDIMRIDP 194 + D+ YL AV TE A +A+ D++TG F ++ + ++++ R DP Sbjct: 111 ---TTDADAQYLAAVVD-GTESASDGGYDLAFADVTTGRFLVADAEDADDALTELYRFDP 166 Query: 195 REIIFSEKELSHAEYKSLF-ETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS 253 E++ + + L E + F + + + + TVD + Sbjct: 167 VEVLPGPDVRTDDDLLGLVRERIDAALTLHETEAFAPKRAAHTVREQFGEETVDRL-AVG 225 Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA A + Y+ +T ++ + + +D+ + NLE+ T+ G RE S Sbjct: 226 DSTLAAAGAVLDYVAETGTGVLASMTRIQAHHGDDHVTLDATTQRNLELTETMQGEREGS 285 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L TID++ T AGGRL E + P + R +S+ + + +Q L + D Sbjct: 286 LFATIDHTETSAGGRLLKEWLQRPRRSLETLERRQESVAALASAALARDELQDRLGDAYD 345 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ---- 429 + R S+ G + +D+ +R + + N P+ + ++ P Sbjct: 346 LARLASKASHGSADARDLLSVRQTLAVLPALAETIASN--PDLAASPLSEIVDRPDREAA 403 Query: 430 -SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 L + L ++D+ P+ GG R G D LDE ++ KR + +L + ++ + Sbjct: 404 SELREALEEAIADEPPSTVTQGGLFRKGYDDELDEVIDRHEEVKRWLDTLADREKKQYGL 463 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 ++ + N GY+I+V S+A + D + +T+ N RFTT EL + E I Sbjct: 464 SHVTVDRNKTDGYYIQVGKSAADGVP------DHYEEIKTLKNSKRFTTDELEEKEREIL 517 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 +E E FE L + ++E L N + +A +D +LA A E + +P + Sbjct: 518 RLEEQRGNLEYELFEELREEVAARAELLQNVGRALATVDALASLATHAAENRWVQPELHR 577 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 V+ GRHP+VE+T + F+ ND L D++ G L ++TGPNM GKST++R Sbjct: 578 GDRLDVEQGRHPVVEQTTE------FVPNDVRL----DEDRGFL-VVTGPNMSGKSTYMR 626 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q A IV++AQ+GS+VPA A IG+VD +F+RVG+ D LA GRSTFMVEM E ++IL+ AT Sbjct: 627 QVAGIVLLAQIGSFVPAESAEIGLVDGIFTRVGALDELAQGRSTFMVEMSELSNILHTAT 686 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA 788 S VILDE+GRGTAT DG+SIAWA EYLH + + L ATH+HELT L++ L R N Sbjct: 687 EDSLVILDEVGRGTATYDGISIAWAATEYLHNEVQAKTLFATHYHELTGLAEKLPRVANV 746 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILK 837 + + + + FL V G D SYGI V LAG+P+ V+ R+ D+L+ Sbjct: 747 HVAADERDGDVTFLRTVRDGPTDRSYGIHVADLAGVPDPVVDRSRDVLE 795 >gi|322371540|ref|ZP_08046086.1| DNA mismatch repair protein MutS [Haladaptatus paucihalophilus DX253] gi|320548831|gb|EFW90499.1| DNA mismatch repair protein MutS [Haladaptatus paucihalophilus DX253] Length = 895 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 260/829 (31%), Positives = 430/829 (51%), Gaps = 53/829 (6%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S ++ +++ +K+ ++ ++GDFYE F DDA L L + ++K+ H G PM Sbjct: 5 SEGGIVGEFLSLKAETDADVLTMQVGDFYEFFADDAELVGDVLDLNVSKKSSH-GSSYPM 63 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP+ Y++ L++ G+R+A+ +Q E+ G + R + R+VTPGTL E Sbjct: 64 AGVPLSELTPYVKGLVERGYRVAVADQYETD------GGHA---RRISRVVTPGTLLE-- 112 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHD---RLISDIMRIDPREIIF 199 + D+ YL + R+ + +A+ D++TG F +S S D + ++++ R DP E++ Sbjct: 113 -TTSADAQYLAGIVRVDDGYGLAFADVTTGRFLVSAVSGPDADSKALTELYRFDPAEVLP 171 Query: 200 SEKELSHAEYKSLFE-----TLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG--SF 252 EL + + S E T +++V N F + R + + + + G S Sbjct: 172 G-PELRNDD--SFLERVRERTDASLSVHDANAFAPGKAAH-RTREQFGTEALSSLGLDSG 227 Query: 253 SQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 E AA A +SY+++T ++ + + +D+ + NLE+ T+ G R+ Sbjct: 228 DGAEVRAAGAVLSYVEETGAGVLGSMTRLQSYHADDHVELDATTQRNLELTETMHGDRKG 287 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 SL +T+D++ T AG RL E + P + R S+ F ++ + I++ L + Sbjct: 288 SLFETVDHTKTSAGRRLLKEWLQRPRRSPDALRERQSSVAAFAESALAREEIRETLADAY 347 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE 432 D+ R S+ G + D+ +RD + + + + P + +L P E Sbjct: 348 DLERLASKAVSGSADAHDLLRVRDSLAVLPTVADAVA--NAPSLSGSPLAELVSRPNREE 405 Query: 433 KTL-----SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 + +++D P GG LR G D LD+ +++ +L + T Sbjct: 406 VERLREELAEAVAEDPPNTVTQGGLLRRGYDEELDDIIDSHEENLEWFDTLADREKSRTG 465 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 I +L++ N GY+++V S + ++ E+ +T+ N R+ T EL + E I Sbjct: 466 ISHLQVDRNKTDGYYLQVGKSDTDKVPEEYEAV------KTLKNSERYVTDELREREREI 519 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 +E E F L + E +E L + + +A +D+ +LA+ A E + RP + Sbjct: 520 LRLEERRGELEYELFGELRERVAEHAELLQDVGRTLAELDVLASLAVHAVENGWVRPELV 579 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 S ++ GRHP+VE+T + F+ ND + +D+ + ++TGPNM GKST++ Sbjct: 580 ES-GLDIEQGRHPVVERTTE------FVPNDVRMD--DDR---EFLIVTGPNMSGKSTYM 627 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ ALI ++AQ+GS+VPA A IG+VD +F+RVG+ D LA GRSTFMVEM E ++IL+ A Sbjct: 628 RQVALITLLAQVGSFVPARSARIGVVDGIFTRVGALDELAQGRSTFMVEMQELSNILHSA 687 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 + S VILDE+GRGTAT DG+SIAWA EYLH R + L ATH+HELT L+ L+R N Sbjct: 688 SEDSLVILDEVGRGTATYDGISIAWAATEYLHNEVRAKTLFATHYHELTTLADHLERVEN 747 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 + + + + FL V G + SYGI V LAG+P V+ R+ D+L Sbjct: 748 VHVAADERDGDVTFLRTVRDGPTNRSYGIHVADLAGVPMPVVERSRDVL 796 >gi|257051580|ref|YP_003129413.1| DNA mismatch repair protein MutS [Halorhabdus utahensis DSM 12940] gi|256690343|gb|ACV10680.1| DNA mismatch repair protein MutS [Halorhabdus utahensis DSM 12940] Length = 915 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 266/861 (30%), Positives = 433/861 (50%), Gaps = 94/861 (10%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + +T ++ ++ +K L+ ++GDFYE F DA + L + ++++ H G Sbjct: 1 MTEATGIVGEFFSLKDGADADLLAMQVGDFYEFFGADAETVADELDLQVSQKSSH-GSSY 59 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PM GVPV+ Y+ L++ G+ +A+ +Q E+ G+ R V ++VTPGTL Sbjct: 60 PMAGVPVNELTPYLTALVERGYHVAVADQHET-----DDGHA----RKVEKIVTPGTL-- 108 Query: 142 DQLLSPTDSN--YLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 LS TD+ YL A+ W +A+ D++TG F ++ ++ D + S++ R DP E++ Sbjct: 109 ---LSTTDAGARYLAAIVEGEA-WGLAFADVTTGEFFVTQVADRDAVFSELYRFDPAEVL 164 Query: 199 FSEKELSHAEYKSLFETLGNVAVA-QPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK 257 + E + +V+ F + R+ + + T+++ G Sbjct: 165 PGPTVRADDEMIERLRERTDASVSLHATEAFAPGRARHRLREQFGTETIESVGIGDAESA 224 Query: 258 TAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 AA A+ SY+++T ++ +R + +D+ + NLE+ T+ G R SLL Sbjct: 225 IAAGGAVLSYVEETGQGVLASMTRLQRYGASDHVELDATTQRNLELTETMRGERTGSLLD 284 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 TID+++T AG R + P ++ R DS+ + ++ +L + D+ R Sbjct: 285 TIDHTVTSAGTRTLRAWLQRPRRSRETLDRRGDSVEALATEAMARERLRDVLGDAYDLER 344 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 S+ G + +D+ R+ ++ L LF E +R V ++ P E LS Sbjct: 345 LASKAASGSADARDL-------RAAVDTLELF------ETVRAIV---RETPTLAESPLS 388 Query: 437 SMLS-------------------DDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIAS 477 + L DD P +GG +R+G DA LDE + + I + Sbjct: 389 TWLDEPDPAAVATLAADLDAAIVDDPPGTITEGGIIREGYDAELDEVIDEHETALEWIET 448 Query: 478 LQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTT 537 L + E I +L + N GY+I+V S + D + + +T+ N R+T Sbjct: 449 LPEREQREHGITHLSVDRNKTDGYYIQVGKSETGKVP------DHYENVKTLKNSERYTI 502 Query: 538 LELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAK 597 EL + E +I +E + FE L A+ + ++ L Q +A +D+ ALA A Sbjct: 503 AELTERERKIFRLEERRHDLERQCFEELREAVADHADLLQGVGQALAAVDVMAALATHAV 562 Query: 598 EQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTG 657 ++ RP + +S V+ GRHP+VE+T + F+ ND L +D+ + ++TG Sbjct: 563 RNDWTRPTLRDSRALDVEAGRHPVVEQTTE------FVPND--LRMDDDR---RFLIVTG 611 Query: 658 PNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEM 717 PNM GKST++RQ ALIV++AQ+GS+VPA A +G+VD +++RVG+ D LA GRSTFMVEM Sbjct: 612 PNMSGKSTYMRQAALIVLLAQIGSFVPARSAEVGLVDGIYTRVGALDELAQGRSTFMVEM 671 Query: 718 IETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYL----HETNRCRGLLATHFH 773 E A+IL+ AT S VILDE+GRGTAT DG+SIAWA EYL + + L ATH+H Sbjct: 672 QELANILHSATEDSLVILDEVGRGTATYDGVSIAWAATEYLSSAQSASPSPKTLFATHYH 731 Query: 774 ELTDLSKSLKRFHNATLQVSD-----------------SNEGIIFLHKVIPGIADHSYGI 816 ELT L+ + N + V + +++ + FL V G AD SYG+ Sbjct: 732 ELTTLADHISGVENVHVAVDEPAGGTDGDDAGPPTTDGADDDVTFLRTVRDGPADRSYGV 791 Query: 817 QVGKLAGLPNTVISRAYDILK 837 V LAG+P+ V+SRA ++L+ Sbjct: 792 HVATLAGVPDPVVSRAREVLR 812 >gi|37496418|emb|CAC88861.1| MutS protein [Ralstonia solanacearum] Length = 696 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 252/730 (34%), Positives = 385/730 (52%), Gaps = 50/730 (6%) Query: 47 RMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIA 106 RMGDFYELFF+DA A+R L ITLT RG G+ I M GVP H Y+ KL+K+G +A Sbjct: 1 RMGDFYELFFEDAEKAARLLDITLTSRGTTNGQPIRMAGVPFHAVEQYLAKLVKLGESVA 60 Query: 107 ICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWA-- 164 ICEQI P K V R VVR+VTPGTLT+ LLS +N+L+A+A+I + Sbjct: 61 ICEQIGDPAT-----TKGPVERKVVRVVTPGTLTDAALLSDKVNNHLLAIAQIPGKRGAA 115 Query: 165 ----IAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVA 220 +AW+++ G ++ + ++L ++ RI P E++ + L+ + L Sbjct: 116 PLVGLAWLNLVGGELRLMECSAEQLDRELERIRPAEVLADDATLNAVAFDVARTRL---- 171 Query: 221 VAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGY 280 P+ FD R+ + + ++ FG + AAA A+ T G Sbjct: 172 ---PDWHFDVEAGARRLREQLGVASLVAFGCETLTAALAAAGALLNYAAA------TQGQ 222 Query: 281 PEREDIQSTL-----FI--DSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAER 333 R I T+ FI D+A R NLE+ TL G +L +D T G RL Sbjct: 223 SLRHVIGLTVEHESEFIGLDTATRRNLELTETLRGQESPTLFSLLDTCATSMGSRLLRHW 282 Query: 334 IASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAV 393 + PL D R +I + ++ L++ DV R RL + P+D++ Sbjct: 283 LHHPLRDRAVPQARQQAIEVLLAGDW--QSLRGTLRTLSDVERITGRLALLSARPRDLSS 340 Query: 394 IRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFL 453 +RD + + + ++D +L G + +P+ L + + RDGG + Sbjct: 341 LRDTLARLPEVRDQLPQSD-DAQLLGDLHAALAIPEDAHALLQRAVMAEPAAMVRDGGVI 399 Query: 454 RDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVL 513 G DA LDE R + + + + L+ + E T I NL++++N G++IEVT+ A+ + Sbjct: 400 ARGYDADLDELRDISENCGQFLVDLEARERERTGIANLRVEYNRVRGFYIEVTNGQAAKV 459 Query: 514 KKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQS 573 D + RQT+ N R+ T EL E++ +A + AL E +E L ++ Sbjct: 460 PND------YRRRQTLKNAERYITPELKAFEDKALSAQDRALSREKYLYEDLLQKLLPHL 513 Query: 574 ESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKP 633 L + +A D+ LA A ++ RP + ++ + RHP+VE+ ++Q Sbjct: 514 PVLKRIAAALAQADVLATLAERAHALSWSRPALTDAPGIELIRARHPVVEQQVEQ----- 568 Query: 634 FIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIV 693 F+ANDC L + + KL L+TGPNMGGKSTF+RQ AL+V++A +G++VPA A IG + Sbjct: 569 FVANDCVL-----QETRKLLLITGPNMGGKSTFMRQTALVVLLAYVGAFVPADAATIGPI 623 Query: 694 DKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWA 753 D++F+R+G+AD+LA GRSTFMVEM E A+IL++AT S V++DEIGRGT+T DGL++AWA Sbjct: 624 DRIFTRIGAADDLAGGRSTFMVEMTEAAAILHRATPNSLVLMDEIGRGTSTFDGLALAWA 683 Query: 754 TIEYLHETNR 763 +L NR Sbjct: 684 IARHLLSHNR 693 >gi|222478558|ref|YP_002564795.1| DNA mismatch repair protein MutS [Halorubrum lacusprofundi ATCC 49239] gi|222451460|gb|ACM55725.1| DNA mismatch repair protein MutS [Halorubrum lacusprofundi ATCC 49239] Length = 931 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 268/827 (32%), Positives = 436/827 (52%), Gaps = 54/827 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 T ++ +++++K+ ++ + GDFYE F DDA L + L +T++++ H G PM G Sbjct: 3 TGIVGEFLDLKAETDADILAMQCGDFYEFFADDAELVADELDLTVSQKSSH-GSSYPMAG 61 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP+ Y++ L++ G+R+A+ +Q E+ + G+ R + R+VTPGTL E Sbjct: 62 VPLSELTPYVKALVERGYRVAVADQYET-----EDGHA----REITRVVTPGTLLE---T 109 Query: 146 SPTDSNYLMAVARIRTE----WAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI--- 197 + D+ YL A+ R + + +A D++TG F ++ + L +++ R DP E+ Sbjct: 110 ADDDARYLAAIVREGDDADGPYGLALADVTTGRFLVTEVDDEGDLRAELYRFDPAEVLPG 169 Query: 198 --IFSEKELSHAEYKSLFETLGNVAVAQPNVFF----DHSISESRIADYYNITTVDTFGS 251 + ++ L A + L G+V+V F H++ E + T D+ G Sbjct: 170 PRVRNDDRLLGAVREDLS---GSVSVFDAEAFAPGRAKHAVREQ-----FGRETADSVGI 221 Query: 252 FSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 S++ AA A + Y+++T +I + +D+ + NLE+ T+ G + Sbjct: 222 DSELALRAAGAVLGYVEETGAGVLASITRLTAYGDGDHVAVDATTQRNLELTETMRGDAD 281 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 SL +T+D+++T AGGRL E I P D ++N RLD++ + + +++ L + Sbjct: 282 GSLFETVDHTVTAAGGRLLREWITRPRRDREELNRRLDAVEALASAALARDRLRETLGDA 341 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAV-EKL-KKLPQ 429 D+ R +R G +++ +RD + + + L + AV E++ ++ Sbjct: 342 YDLERLAARATSGSAGARELLSVRDSLALVPALADAVSGTALADSPVAAVLERIDRERAA 401 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 +L L+ L++D P K GG LR G D LDE + +++ + L + + + Sbjct: 402 TLHDELADALAEDPPKTKTQGGLLRVGYDGELDELIARHEKANEWLDRLAEREKRQYGLS 461 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 ++ + N GY+I+V S+A + + + +T+ N RF T EL + E + Sbjct: 462 HVTVDRNKTDGYYIQVGKSAADGVPE------HYREIKTLKNSKRFVTDELEEREREVLR 515 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 + +E E FE L + +E L + + +A ID +LA A ++ RP + + Sbjct: 516 LEEARGELEYELFEELRERVAADAELLQDVGRAVAEIDALASLATHAAGNDWTRPELADE 575 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 V+ GRHP+VE+T F+ ND L D G L ++TGPNM GKST++RQ Sbjct: 576 RRLDVEAGRHPVVERTTD------FVPNDLRL----DGERGFL-IVTGPNMSGKSTYMRQ 624 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALI ++AQ GS+VPA A +G+VD +++RVG+ D LA GRSTFMVEM E ++IL+ AT Sbjct: 625 AALIQLLAQAGSFVPARTATVGLVDGIYTRVGALDELAQGRSTFMVEMQELSNILHSATA 684 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 S VILDE+GRGTAT DG+SIAWA EYLH R R L ATH+HELT L+ L R N Sbjct: 685 DSIVILDEVGRGTATYDGISIAWAATEYLHNEVRARTLFATHYHELTTLADHLPRVENVH 744 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 + V + + FL V G + SYG+ V LAG+P V+SRA +L Sbjct: 745 VAVDKRDGEVTFLRTVRDGPTNRSYGVHVADLAGVPAPVVSRAGTVL 791 >gi|222480636|ref|YP_002566873.1| DNA mismatch repair protein MutS [Halorubrum lacusprofundi ATCC 49239] gi|222453538|gb|ACM57803.1| DNA mismatch repair protein MutS [Halorubrum lacusprofundi ATCC 49239] Length = 956 Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust. Identities = 258/840 (30%), Positives = 426/840 (50%), Gaps = 63/840 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM+ QY ++ + + D+LV +++GDFYE F + A + +TLT+R G D PM G Sbjct: 24 TPMLSQYADLCAAHEDALVLFQVGDFYEAFCEAAEAVAGVCEVTLTERSDSTG-DYPMAG 82 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 +P+ A Y+ L+ G+R+A+ +Q+E +A LV R V ++TPGT+ ED+LL Sbjct: 83 IPIDNAAPYLGSLLDAGYRVALGDQVEDAEQAS-----GLVDRAVTEVITPGTVVEDELL 137 Query: 146 SPTDSNYLMAVARIRTEW-----------AIAWIDISTGIFKISTSNHDRLISDIMRIDP 194 +NY+ AVA + +A +D+STG ++ + D + ++ RI P Sbjct: 138 EAGTTNYVAAVAGGGEDGESDDAPEPAPVGLAAVDVSTGECLVTAGDRDTVAEELDRIAP 197 Query: 195 REIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ 254 E+I ++K G + F+ + R+ Y G Sbjct: 198 AELIAGPD---TPDFKPADAERGWTVHEYDSGVFERRAAIERLEPYLPAPDRRFDG---D 251 Query: 255 VEKTAAAAAISYIKKTQMVNKPT--IGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 E AA A ++Y + TQ + P + R D + L +D+AA+ +LE+ Sbjct: 252 AELRAAGAVLAYAEYTQGDDGPLSYVTRIRRYDPRDRLRLDAAAQRSLELFENRGLGASD 311 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 +L +D + G R + PL D+ I +R D++ ++ + L ++ Sbjct: 312 TLFDALDETRCALGRRCLERWLRRPLVDADAIRSRHDAVGELADRTLVREGVADALAAAY 371 Query: 373 DVPRSLSRLKIGRGEPKDI-------AVIRD-----GIRSGINILNLFLKNDLP--EELR 418 D+ R + R+ GR + +D+ AV+ D +G + D P + LR Sbjct: 372 DLERLVGRISRGRADARDLRSLHATLAVVPDLKATLAGGNGGDDREGGTDADRPRTDHLR 431 Query: 419 GAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASL 478 ++L +L + + + + ++ + P +GG + +G D LD R+ + + +A L Sbjct: 432 DLRDRLDELTE-VRELIDDAIAANPPPEITEGGVIGEGFDDDLDALRATEREGREWVADL 490 Query: 479 QLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTL 538 + E T I +L + HN GY+IEVT ++ + D + RQT+ N R+ T Sbjct: 491 EASERERTGIDSLSVGHNQVHGYYIEVTDANLDRVPDD------YRRRQTLKNSERYYTP 544 Query: 539 ELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKE 598 EL + E I A A +E E F + + ++E + + IA ID +LA +A E Sbjct: 545 ELKEREEEIVGAAERADALEYELFVDVRERVGSETERIQGLADAIAEIDALRSLATVAVE 604 Query: 599 QNYCRPII------DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKL 652 +Y RP I D + ++ GRHP+VE+ + + F+ ND DL G + Sbjct: 605 YDYVRPEIVDEPASDTNAGVEIEGGRHPVVER-----AEESFVPNDADLP------RGSI 653 Query: 653 WLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRST 712 ++TGPNM GKST++R AL V++AQ GS+VPA A + + D+LF+RVG++D++A G+ST Sbjct: 654 AVITGPNMSGKSTYMRSVALAVVLAQTGSFVPAQAASLPVFDRLFTRVGASDDIAGGQST 713 Query: 713 FMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHF 772 FM EM E IL+ A S V+LDE+GRGTAT DG +IA A E++H+ + ATH+ Sbjct: 714 FMREMSELTEILHDAGPDSLVLLDEVGRGTATTDGRAIARAAAEFIHDELGATAIFATHY 773 Query: 773 HELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 H+LTDL+ +R N + + + FLH+++PG + SYG++V +LAG+P V+ R+ Sbjct: 774 HDLTDLAAERERVFNLHFTATREDGDVTFLHRIVPGASSSSYGVEVAELAGVPAPVVERS 833 >gi|292656069|ref|YP_003535966.1| DNA mismatch repair protein MutS [Haloferax volcanii DS2] gi|291371610|gb|ADE03837.1| DNA mismatch repair protein mutS [Haloferax volcanii DS2] Length = 921 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 255/852 (29%), Positives = 436/852 (51%), Gaps = 71/852 (8%) Query: 5 FSSPQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASR 64 + +P ++ + + DL TPM+ QY ++ + D++V +++GDFYE F A +R Sbjct: 11 YGAPPEMLAVRDDL-------TPMLSQYADLCEDHDDAVVLFQVGDFYEAFCGAAEAVAR 63 Query: 65 CLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKS 124 +TLT+R G PM G+P+ A Y+++L+ G+R+A+ EQ+E EA Sbjct: 64 TCEVTLTQREDSTGT-WPMAGIPIDNAAGYLERLLDAGYRVALAEQVEDAEEAS-----G 117 Query: 125 LVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVAR------------IRTEWAIAWIDIST 172 LV R V +L+TPGT+ +++LL + YL AVAR + +A +D+ST Sbjct: 118 LVDRAVTQLITPGTVVDEELLDAGRATYLGAVARGGGNAETRDGDGDADTYGLAVVDVST 177 Query: 173 GIFKISTSNHDRLISDIMRIDPREIIFSEK----ELSHAEYKSLFETLGNVAVAQPNVFF 228 G ++ ++ + ++ R+ P E++ +L ++ FE P F Sbjct: 178 GECLVTGADRALALEELERLAPAELVVGPDCDLPDLPFDPMETPFE---------PEAFD 228 Query: 229 DHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNK-PTIGYPEREDIQ 287 + E+ A V S E A AA++Y + Q ++ + R D + Sbjct: 229 ADAARETLSAYAPRPDAV----VESAAELRAVGAALAYAEYAQGDSQLAYVTRVTRFDPR 284 Query: 288 STLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTR 347 L +D+ A +LE+ + S +L +D + G R + PL D +I R Sbjct: 285 EFLQLDATAIRSLELFESRSARAGSTLFSVLDETACALGRRRLEAWLRRPLVDRDRIEAR 344 Query: 348 LDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL 407 LD++ + + ++ L S D+ R ++R+ R + +D+ ++ + I + Sbjct: 345 LDAVEALFDDALARADLRDHLSSVYDLERLVARVSRERADARDLRSLKTTLDRVPEIRDA 404 Query: 408 FL--KNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETR 465 + +DL +LR ++++L + + + + D P +GG + DG DA LD+ R Sbjct: 405 LVGTDSDLLSDLRDSLDEL----EDVRDLVGDAVVSDPPQEITEGGVIADGFDAELDDVR 460 Query: 466 SLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIH 525 + + +++L+ + E T I +L++ +N GY+IEVT+ + + D + Sbjct: 461 GTAEAGREWVSNLEAREQERTGIDSLEVGYNQVHGYYIEVTNPNLDRVPDD------YQR 514 Query: 526 RQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAI 585 RQT+ N RF T EL + E+ I A++ A +E + F + + +S + + +A Sbjct: 515 RQTLKNSERFYTPELKEREDEILRASDRADALEYDLFCEVRADVATESARVQAVADALAD 574 Query: 586 IDISIALAILAKEQNYCRPII-----DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCD 640 +D+ LA +A +Y RP D S + GRHP+VE+ + F+ N Sbjct: 575 LDVLRTLADVAVTNDYARPEFHAGDTDESAGIRIDAGRHPVVERAQDE-----FVPN--- 626 Query: 641 LSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRV 700 P D G + L+TGPNM GKST++RQ AL+ ++AQ+GS+VPA A + ++D++F+R+ Sbjct: 627 ---PADLPRGSVALVTGPNMSGKSTYMRQVALVTLLAQVGSFVPAKSARLPVLDRVFTRI 683 Query: 701 GSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHE 760 G++D++A G+STFM EM E IL+ AT S V+LDE+GRGT+T DGL+IA A E+LH+ Sbjct: 684 GASDDIAGGQSTFMREMSELTEILHNATGDSLVLLDEVGRGTSTADGLAIARAATEFLHD 743 Query: 761 TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGK 820 L ATH+H+LTD + N + + + FLH V G + SYG++V + Sbjct: 744 EVGATTLFATHYHDLTDAADDRAGVFNLHFTAARRDGEVTFLHSVADGPSSSSYGVEVAQ 803 Query: 821 LAGLPNTVISRA 832 LAG+P +V+ RA Sbjct: 804 LAGVPASVVERA 815 >gi|309791040|ref|ZP_07685576.1| DNA mismatch repair protein MutS [Oscillochloris trichoides DG6] gi|308226895|gb|EFO80587.1| DNA mismatch repair protein MutS [Oscillochloris trichoides DG6] Length = 996 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 286/990 (28%), Positives = 482/990 (48%), Gaps = 141/990 (14%) Query: 30 RQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD--------- 80 RQY ++K+ D+++ +R GDFYE F DDA L + L +TLT++ + K Sbjct: 11 RQYRKLKAEAEDAILLFRFGDFYETFDDDAKLIAELLDVTLTRKDFAVDKGRPKEEQKLF 70 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNK----------------- 123 PM G+P H Y+ L+ G+R+AI EQ+ S EA + + Sbjct: 71 TPMAGMPYHAVERYVNDLVARGYRVAIAEQL-SETEASRSDTRPKSIFAAGLQQIVPGEM 129 Query: 124 --SLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSN 181 +V R +VR++TPGT+ + +L+ T + YL A + +A+ ++STG F + Sbjct: 130 ERKMVHREIVRVITPGTVVDPSMLTATSNTYLAAAITEGGQIGLAYAELSTGEFAAIEFS 189 Query: 182 HDR----LISDIMRIDPREIIFSE------KELSHAEYKSLFE----------------- 214 +R L ++ R+ E++ + +L+ AE + + Sbjct: 190 GERAAAQLQGELARLQVAEVLVPDDPHLRVADLAPAEARLTQDLAPLTKDERDLLLPHER 249 Query: 215 -------------TLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 T G+V A P+ +D ++ + + ++ FG + T AA Sbjct: 250 VARRLDQDSEARWTKGHV-TAWPSWRWDIQTAQETLTRQLRVQSLAAFGLDGRPLATRAA 308 Query: 262 AAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 A+ Y+ +TQ I S +F+D R NLE+L + S + + +L+ +D Sbjct: 309 GALLQYVHQTQRHQANQINRLRVYTTSSFMFLDPQTRRNLELLESSSATSKTALIHILDR 368 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G RL + PL + + R ++I ++ +L +++ L D+ R+++R Sbjct: 369 TRTPMGARLLRRWLNQPLLELEPLLARQEAIAACVEATLLRAELRQALGQVGDMERAVNR 428 Query: 381 LKIGR--GEPKDIAVIRDGIRSGINILNLF---LKNDLPEELRG---------------- 419 + G P+D+ +R +R+ I+ L +PE R Sbjct: 429 VAQGVTVATPRDMVQLRTALRALPEIITATGTELTAMIPEPSRAMPPAGSQPAQPAEEEE 488 Query: 420 ---------AVEKLKKLPQSLEKT------LSSMLSDDLPTFKRDGGFLRDGADASLDET 464 + E + P L+ L L DD P +LR G + Sbjct: 489 EDLFAADAPSAEAETEAPHLLDACNDIAALLERALDDDPPALLGSSNYLRGGEEGGERPR 548 Query: 465 RSLRD--------------QSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVT-SSS 509 R LR ++ I L+ + + T I++LK+ +N+ GY+IEV+ ++ Sbjct: 549 RVLRPGFEPRIDALVRASRHAQEFIDRLEGRERDRTGIRSLKVGYNSVFGYYIEVSRTTD 608 Query: 510 ASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAI 569 ++ KD + K QT+ R+ T EL + E I A + +E E+F L I Sbjct: 609 EKLIPKDYQRK------QTLVGAERYVTEELKEYEQVIDRAKLQLVEMEREAFARLCEEI 662 Query: 570 IEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQ 629 + +E L ++++A +D+ ALA +A Y RP ++ ST ++ GRHP+VE+ + + Sbjct: 663 GQHTERLREVARILAQLDVVAALAEVAVRGRYTRPSLNTSTRLQIRGGRHPVVEQMIPET 722 Query: 630 SSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAH 689 F+ ND + D S ++ ++TGPNM GKST +RQ ALIV++AQ+G++VPA A Sbjct: 723 ----FVPNDILI----DTTSAQMLIITGPNMSGKSTVMRQVALIVLLAQIGAFVPAESAE 774 Query: 690 IGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLS 749 +G+VD++F+R+G+ D++A+G+STFMVEM ETA++L Q++ +S +ILDE+GRGT+T DG++ Sbjct: 775 VGLVDRIFTRIGAQDDIATGQSTFMVEMTETAALLVQSSRRSLIILDEVGRGTSTYDGMA 834 Query: 750 IAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIP 807 IA A +EY+H +CR L ATH+HELT L L R N + + + ++FLH++ Sbjct: 835 IARAVVEYIHNEPQLQCRTLFATHYHELTALEHELDRVRNLHMAAIEQGKHVVFLHQLRE 894 Query: 808 GIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLS 867 G AD SYGI V +LAG+P VI RA ++L E + P + + LS Sbjct: 895 GGADRSYGIHVAELAGIPRPVIQRASELLAELEAGRSAAPIPVPPPTPTLTPPPREGQLS 954 Query: 868 KND---KLFVEKIKCLNLDEMSPLTALKTL 894 D +E ++ L +++++PL AL L Sbjct: 955 LFDLAPNPVIEYLRRLKINDLTPLEALNRL 984 >gi|313127385|ref|YP_004037655.1| DNA mismatch repair protein muts [Halogeometricum borinquense DSM 11551] gi|312293750|gb|ADQ68210.1| DNA mismatch repair protein MutS [Halogeometricum borinquense DSM 11551] Length = 923 Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust. Identities = 259/821 (31%), Positives = 433/821 (52%), Gaps = 38/821 (4%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 +S ++ +++ +KS ++ + GDFYE F DDA + L + ++++ H G PM Sbjct: 2 TSQGIVGEFLSLKSETDADVLTMQCGDFYEFFGDDAEFVAEELDLKVSQKSSH-GSSYPM 60 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVPV Y++ L++ G+R+A+ +Q + + G+ R + R+ TPGTL E Sbjct: 61 AGVPVDDLTPYLKVLVERGYRVAVADQFDG-----EDGHY----RKITRVATPGTLLE-- 109 Query: 144 LLSPTDSNYLMAVARIRTEWAI--AWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFS 200 + D+ Y+ ++ + + A+ D++TG F ++ T + D S++ R P EI+ Sbjct: 110 -TTDADARYIASMVAPDDDEGVGLAFADVTTGQFFVTETDDADAAYSELYRFSPVEILPG 168 Query: 201 EKELSHAEYKSLF--ETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++ S +T ++++ + + F ++ + D + T+++ G S + Sbjct: 169 PTVRGDDDFLSRLRQDTDASLSLFEADAFA-PGRAKHVVRDQFGRETLESVGLNSDLAVR 227 Query: 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA A + Y+++T ++ + + + L +D+ + NLE+ T+ G + +L+ I Sbjct: 228 AAGAVLRYVEETGTGVLQSMTRLQTYETRDHLELDATTQRNLELTETMHGETDGTLVDAI 287 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D+++T GGRL E + P D ++ RLD++ + + ++ L D+ R Sbjct: 288 DHTVTSPGGRLLREWLTRPRRDRAELERRLDAVTALAREALSRERVRDTLDGVYDLERLA 347 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEE-LRGAVEKL-KKLPQSLEKTLS 436 +R G D+ +RD + + ++ L E L V + ++ +L L+ Sbjct: 348 ARAASGSAGASDLLSVRDTLAVLPAVAEAIEESPLSESPLSDVVARPDREAAAALHDELA 407 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 L+DD P R GG + G D LDE ++++R I +L + + + ++ + N Sbjct: 408 DALADDPPKTVRQGGLFKHGYDDELDELIDSHEEAQRWIDTLADREKRQHSLSHVTVDRN 467 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 GY+I+V S A + + + +T+ N RF T EL + E I S Sbjct: 468 KTDGYYIQVGKSVADQVPE------HYREIKTLKNSKRFVTEELEEREREILRLEESRGE 521 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E E F L + +E L + +V+A ID+ +LA A ++ RP + + ++ Sbjct: 522 LEYELFCELRERVAAHAELLQDVGRVLAEIDVLSSLATHAAGNDWTRPTLTDPGPVRIEA 581 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VE+T + F+ ND + D G L ++TGPNM GKST++RQ ALIV++ Sbjct: 582 GRHPVVERTTE------FVPNDLYM----DDERGFL-IVTGPNMSGKSTYMRQAALIVLL 630 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+GS+VPA A IG+VD +++RVG+ D LA GRSTFMVEM E ++IL+ AT S VILD Sbjct: 631 AQVGSFVPARSAEIGVVDGIYTRVGALDELAQGRSTFMVEMQELSNILHSATEDSLVILD 690 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 E+GRGTAT DG+SIAWA EYLH R + L ATH+HELT L+ L R N + + + Sbjct: 691 EVGRGTATYDGISIAWAATEYLHNEVRAKTLFATHYHELTSLADHLDRVANVHVAAEERD 750 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILK 837 + FL V G D SYGI V LAG+P V+SRA ++L+ Sbjct: 751 GDVTFLRTVQDGPTDRSYGIHVADLAGVPKPVVSRADNVLE 791 >gi|289580960|ref|YP_003479426.1| DNA mismatch repair protein MutS [Natrialba magadii ATCC 43099] gi|289530513|gb|ADD04864.1| DNA mismatch repair protein MutS [Natrialba magadii ATCC 43099] Length = 896 Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust. Identities = 268/851 (31%), Positives = 433/851 (50%), Gaps = 84/851 (9%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 ++ +T ++ ++ +K L+ + GDFYE F +DA S L + ++++ H G Sbjct: 7 SMTEATGIVGEFFSLKEGTDAELLAMQCGDFYEFFGEDAETVSDELDLKVSQKSSH-GSS 65 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 PM GVP+ Y++ L++ G+R+A+ +Q E+ S R +VR+VTPGTL Sbjct: 66 YPMAGVPLDDLTPYLKALVERGYRVAVADQYET---------DSGHAREIVRVVTPGTLL 116 Query: 141 EDQLLSPTDSNYLMAVA---------RIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIM 190 E S D+ YL AV + +A+ D++TG F ++ ++ D ++++ Sbjct: 117 E---TSDADAQYLAAVVDGGSGSSSGSTDARYGLAFADVTTGRFLVAEAADTDEALTELY 173 Query: 191 RIDPREIIFSEKELSHAEYKSLFETLGNV--------AVAQPNVFF----DHSISESRIA 238 R DP E+ L E ++ + LG V + + F DH++ E Sbjct: 174 RFDPVEV------LPGPESRTDDDLLGTVRERIDATLTLHETEAFAPKRADHAVQEQ--- 224 Query: 239 DYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARS 298 + TVD + + AA A +SY+++T ++ + + +D+ + Sbjct: 225 --FGSETVDRL-AVGEAAIAAAGAILSYVEETGAGVLASMTRIQSHHGDDHVTLDATTQR 281 Query: 299 NLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP 358 NLE+ T+ G R+ SL TID++ T AGGRL E + P + R +S+ Sbjct: 282 NLELTETMQGERDGSLFATIDHTETSAGGRLLKEWLQRPRRALDTLEQRQESVAALASAA 341 Query: 359 ILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG----------IRSGINILNLF 408 + + +Q L + D+ R S+ G + +D+ +R+ I S ++ + Sbjct: 342 LARDEMQDTLGEAYDLARLASKATHGSADARDLVAVRETLAVLPALAETIESAPDLADSP 401 Query: 409 LKN--DLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRS 466 L D P+ E ++L ++LE ++S D P+ G + G D LDE Sbjct: 402 LAEIIDRPDR-----ETARELREALENAIAS----DPPSTVTQGELFQYGYDDDLDEVID 452 Query: 467 LRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHR 526 ++ K+ + +L + + + ++ + N GY+I+V S+A + D + Sbjct: 453 SHEEVKQWLDTLAEREKRQYSLSHVTVDRNKTDGYYIQVGKSAADGVP------DHYEQI 506 Query: 527 QTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAII 586 +T+ N RFTT EL + E + +E E FE L + EQ+E L + + +A + Sbjct: 507 KTLKNSKRFTTDELAEKERDVLRLEEKRGELEYELFEELREEVAEQAELLQDVGRALATV 566 Query: 587 DISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPND 646 D +LA A E + +P + + + GRHP+VE+T + F+ ND L D Sbjct: 567 DALASLATHAAENRWVKPDLHHGDALDIDQGRHPVVEQTTE------FVPNDVRL----D 616 Query: 647 KNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNL 706 ++TGPNM GKST++RQ A IV++AQ+GS+VPA A IG+VD +F+RVG+ D L Sbjct: 617 GEQRGFLVVTGPNMSGKSTYMRQVACIVLLAQIGSFVPAKEAEIGLVDGIFTRVGALDEL 676 Query: 707 ASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRG 766 A GRSTFMVEM E ++IL+ AT++S VILDE+GRGTAT DG+SIAWA EYLH + Sbjct: 677 AQGRSTFMVEMSELSNILHAATDESLVILDEVGRGTATYDGISIAWAATEYLHNEVAAKT 736 Query: 767 LLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPN 826 L ATH+HELT L+++L R N + + + + FL V G D SYGI V LAG+P Sbjct: 737 LFATHYHELTGLAENLPRVANVHIAADERDGDVTFLRTVRDGPTDRSYGIHVADLAGVPG 796 Query: 827 TVISRAYDILK 837 V+ RA D+L+ Sbjct: 797 PVVDRAQDVLE 807 >gi|56808552|ref|ZP_00366286.1| COG0249: Mismatch repair ATPase (MutS family) [Streptococcus pyogenes M49 591] Length = 794 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 262/836 (31%), Positives = 436/836 (52%), Gaps = 67/836 (8%) Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM GVP H+A YI LI++G+++A+ EQ+E P +A +V+R VV+++TPGT+ Sbjct: 5 IPMAGVPHHSAQQYIDVLIELGYKVAVAEQMEDPKQAV-----GVVKREVVQVITPGTVV 59 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIF 199 D + +N+L+AV + +A++D+STG F ++ ++ + S+I + +E++ Sbjct: 60 -DSAKPDSANNFLVAVDFDGCRYGLAYMDVSTGEFCVTDLADFTSVRSEIQNLKAKEVLL 118 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 +LS E L + + + + V+ D S+ + G + VE TA Sbjct: 119 G-FDLSEEEQTILVKQMNLLLSYEETVYEDKSLID---------------GQLTTVELTA 162 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTI 318 A + Y+ KTQM + +I+ L + A +S+L+++ +++ SL + Sbjct: 163 AGKLLQYVHKTQMRELSHLQALVHYEIKDYLQMSYATKSSLDLVENARTNKKHGSLYWLL 222 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D + T G RL I PL I R + I F+ I + LK D+ R Sbjct: 223 DETKTAMGMRLLRSWIDRPLVSKEAILERQEIIQVFLNAFIERTDLSNSLKGVYDIERLS 282 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 SR+ G+ PKD+ + + I + D P + V + LP+ LE + + Sbjct: 283 SRVSFGKANPKDLLQLGHTLAQVPYIKAILESFDSPC-VDKLVNDIDSLPE-LEYLIRTA 340 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + D P +G +R+G D LD R + + IA ++ K +E+ I NLKI +N Sbjct: 341 IDPDAPATISEGSIIRNGFDERLDHYRKVMREGTGWIADIEAKERQESGINNLKIDYNKK 400 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+ VT+S+ S++ + F + T+ N R+ T EL +E ++ A + +E Sbjct: 401 DGYYFHVTNSNLSLVP------EHFFRKATLKNSERYGTAELAKIEGQMLEAREESSSLE 454 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F + + L ++ +A +D+ +LA++A+ +Y RP +++ +++GR Sbjct: 455 YDIFMCIRAQVETYINRLQKLAKTLATVDVLQSLAVVAETNHYIRPQFNDNHVITIQEGR 514 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 H +VEK + Q +I N S D+ + + L+TGPNM GKST++RQ AL VIMAQ Sbjct: 515 HAVVEKVMGVQE---YIPN----SISFDQQTS-IQLITGPNMSGKSTYMRQLALTVIMAQ 566 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 MGS+V A + + + D +F+R+G+AD+L SG+STFMVEM+E + +A++ S ++ DE+ Sbjct: 567 MGSFVAADHVDLPLFDAIFTRIGAADDLISGQSTFMVEMMEANQAIKRASDNSLILFDEL 626 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGTAT DG+++A A IEY+H+ + + ATH+HELTDLS L N + + + Sbjct: 627 GRGTATYDGMALAQAIIEYIHDRVGAKTIFATHYHELTDLSTKLISLVNVHVATLEKDGD 686 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE-------------KLYHH 845 + FLHK+ G AD SYGI V K+AGLP +++ RA ++L E ++ Sbjct: 687 VTFLHKIAEGPADKSYGIHVAKIAGLPKSLLKRADEVLTRLETQSRSTEIISVPSQVESS 746 Query: 846 N---QKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 N Q + L+ E + E + L E I +N M+PL A+ TLY +K Sbjct: 747 NAVRQGQLSLFGDEEKAHEIRQAL--------EAIDVMN---MTPLQAMTTLYELK 791 >gi|89892411|gb|ABD78993.1| HI0707-like protein [Haemophilus influenzae] Length = 746 Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust. Identities = 253/772 (32%), Positives = 413/772 (53%), Gaps = 39/772 (5%) Query: 136 PGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDP 194 PGT++++ LL N + AV + + ++ +A +D+++G F++ ++ + L +++ RI P Sbjct: 1 PGTVSDEALLPERQDNLIAAVYQEKEKFGLATLDMTSGRFQLCEPADKETLRAELQRIVP 60 Query: 195 REIIFSEK--ELSHAEY-KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS 251 E+++ E+ E++ E+ K L +P F+ S + + + + + FG Sbjct: 61 VELLYCEEFNEMAAIEHCKGLRR--------RPIWEFELSTAITLLNRQFGTKDLRAFG- 111 Query: 252 FSQVEKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL 306 VEK+ AA + Y K+TQ P I Q + +D+A R NLE+ + L Sbjct: 112 ---VEKSPLGLSAAGCLLQYAKETQRTALPHIQSISLIQNQDCIQLDAATRRNLELTQNL 168 Query: 307 SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK 366 SG E +L +D +T G RL I P+ D K+ R +I + N L++ +Q Sbjct: 169 SGGTENTLASVLDKCVTPMGSRLLKRWIHQPIRDVEKLKQRQQAIAEIL-NFDLVDELQP 227 Query: 367 ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK 426 L+ D+ R L+R+ + P+D+ +R + I L ++ P L ++ Sbjct: 228 YLQLVGDMERILARVALRSARPRDLTRLRTALEQ-IPALRTIVQQKTPPFLTALFSQIAD 286 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 + + L L + P RDGG + +G + LDE R L D + + + +L+ + E T Sbjct: 287 FSEQCD-LLQRALIETPPLLIRDGGVIAEGYNTELDEWRMLSDGATQYLENLEKREREST 345 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 I LKI N GY+I+++ A ++ ++ RQT+ N R+ EL + E++ Sbjct: 346 GIDTLKIGFNAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKEYEDK 399 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 + + +AL +E + ++ L + ++ +L AS ++ +D+ + LA A NY P Sbjct: 400 VLKSKGAALALEKQLYDELFDLLLPHLGALQLASLALSELDVLVNLAERADTLNYVMPTF 459 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 + + +++GRHP+VE+ LK PFIAN +L+ ++ L ++TGPNMGGKST+ Sbjct: 460 CDEVSVKIENGRHPVVEQVLK----DPFIANPVELN-----HNRHLLIITGPNMGGKSTY 510 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ ALI ++A +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+Q Sbjct: 511 MRQTALITLLAYIGSFVPADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQ 570 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH 786 AT QS V++DEIGRGT+T DGLS+AWA E+L + R L ATH+ ELT L + L+ Sbjct: 571 ATEQSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLEGIA 630 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN 846 N L + N I F+H V G A SYG+ V LAG+P +VI A L EK H+ Sbjct: 631 NIHLDALEHNNSIAFMHAVQDGAASKSYGLAVAALAGVPQSVIKLAKQKLTQLEKNSSHS 690 Query: 847 QKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 E + + + E I+ L+ D++SP AL LY +K Sbjct: 691 ADQQIQALREANHNQGELLFEQETDALREAIEKLDPDDLSPKQALAYLYQLK 742 >gi|115299204|sp|Q5UZG9|MUTS1_HALMA RecName: Full=DNA mismatch repair protein mutS 1 Length = 921 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 256/841 (30%), Positives = 429/841 (51%), Gaps = 63/841 (7%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + +T ++ +++ +K L+ + GDFYE F +DA + + L + ++++ H G Sbjct: 1 MTEATGIVGEFLTLKEGTDADLLAMQCGDFYEFFAEDAEIVADELDLKVSQKSSH-GSSY 59 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PM GVPV Y+ L++ G+R+AI +Q E+ + G+ R + R+VTPGT E Sbjct: 60 PMAGVPVDDLTPYVSALVERGYRVAIADQHET-----ENGHA----REITRVVTPGTHLE 110 Query: 142 DQLLSPTDSNYLMAVARIRTE-----WAIAWIDISTGIFKIST---SNHDRLISDIMRID 193 + YL AV R + + IA D++TG F+++ ++ ++++ Sbjct: 111 ---TGDESAQYLAAVVREASRDSGDTYGIAATDVTTGQFQVTQLDDADAGEALTELYTFG 167 Query: 194 PREIIFSEKELSHAEYKSLFETLGNVAVA-QPNVFFDHSISESRIADYYNITTVDTFGSF 252 P EI+ + + E+ + A+ + F+ + + + + TVD+ G Sbjct: 168 PAEILPGPELRNDDEFLDRLRERTDAALTLHDSASFEPGRASHTVREQFGSETVDSVGIG 227 Query: 253 SQ-VEKTAAAAAISYIKKTQMVNKPTI----GYPEREDIQSTLFIDSAARSNLEILRTLS 307 Q V AA A +SY++ T + + Y ER+ + +D+ + NLE+ T+ Sbjct: 228 DQNVAVRAAGAVLSYVEDTGVGTLAAVTRLQAYGERDHVD----LDATTQRNLELTETMQ 283 Query: 308 GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI 367 G SL TID+++T AGGRL + + P + ++ R + + + I++ Sbjct: 284 GDSSGSLFDTIDHTVTAAGGRLLQQWLQRPRRNRAELQRRQSCVAALSEAAMARERIRET 343 Query: 368 LKSSPDVPRSLSRLKIGRGEPKDIAVIRDG------IRSGINILNLFLKNDLPEELRGAV 421 L + D+ R +R G + +D+ +++ + + ++ L + L GA Sbjct: 344 LSDAYDLERLAARATSGSADARDLRAVQETLALLGQVADAVTETERLAESPLADALDGAD 403 Query: 422 EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLK 481 ++ SL L S L D P R GG + G D LDE + + + +L + Sbjct: 404 ---REAADSLAAELDSALVADPPGTVRQGGLFKRGHDDDLDEIIDEHEAALEWLETLPDR 460 Query: 482 YAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELI 541 E T I +L + N GY+I+V S + + ++ H +T+ N R+TT EL Sbjct: 461 EKERTGITHLSVDRNKTDGYYIQVGKSETDAVPE------KYQHIKTLKNSKRYTTPELD 514 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 + E + +E E F+ L + E + L + + +A +D +LA+ A E ++ Sbjct: 515 EKERDVLRLEERRHDMEYEHFQRLRARVAEHATLLQDVGRTLAELDAFASLAVHAVENDW 574 Query: 602 CRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 RP + + ++ GRHP+VE+T + F+ ND L +D+ + ++TGPNM Sbjct: 575 ARPAVVDGNELSIEAGRHPVVEQTTE------FVPND--LYMDDDR---QFLIVTGPNMS 623 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKST++RQ ALI ++AQ+GS+VPA A +G+VD +F+RVG+ D LA GRSTFMVEM E + Sbjct: 624 GKSTYMRQAALITLLAQVGSFVPARSATVGLVDGIFTRVGALDELAQGRSTFMVEMQELS 683 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS 781 +IL+ AT +S VILDE+GRGTAT DG+SIAWA EY+ + + + L ATH+HELT L + Sbjct: 684 NILHSATEESLVILDEVGRGTATFDGISIAWAATEYIVNSIQSKTLFATHYHELTALGEE 743 Query: 782 LKRFHNATLQV------SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI 835 L N + V + S+ + FL V G D SYG+ V LAG+P V+ R+ + Sbjct: 744 LPTVENVHVAVDGEPRSAGSDGDVTFLRTVRDGPTDRSYGVHVADLAGVPEPVVDRSQAV 803 Query: 836 L 836 L Sbjct: 804 L 804 >gi|15789477|ref|NP_279301.1| DNA mismatch repair protein MutS [Halobacterium sp. NRC-1] gi|169235193|ref|YP_001688393.1| DNA mismatch repair protein MutS [Halobacterium salinarum R1] gi|44888242|sp|Q9HSM2|MUTS1_HALSA RecName: Full=DNA mismatch repair protein mutS 1 gi|189030420|sp|B0R2T0|MUTS1_HALS3 RecName: Full=DNA mismatch repair protein mutS 1 gi|10579811|gb|AAG18781.1| mismatch repair protein [Halobacterium sp. NRC-1] gi|167726259|emb|CAP13040.1| DNA mismatch recognition protein [Halobacterium salinarum R1] Length = 871 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 263/899 (29%), Positives = 441/899 (49%), Gaps = 62/899 (6%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 ++ ++ +K+ L+ ++GDFYE F DA + L + ++++ H G PM GVP Sbjct: 3 IVDEFQALKAETDADLLAMQVGDFYEFFAADARTVASVLDLQVSEKSNH-GSSYPMAGVP 61 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 V Y+ L++ G+R+A+ EQ E+ + + R + R+VTPGTL L+ Sbjct: 62 VDDLTPYLAALVERGYRVAVAEQSET--------DAGDIEREIERVVTPGTL-----LAS 108 Query: 148 TDSN--YLMAVAR-IRTEWAIAWIDISTGIFKISTSNHDRL--ISDIMRIDPREIIFSEK 202 TD++ YL AV R +W +A++D++TG F++ T DR ++++ R P E++ Sbjct: 109 TDADPRYLAAVVREAGGDWGLAFVDVTTGQFRV-TRGADRADAVTELYRFAPAEVLPGPA 167 Query: 203 ELSHAEYKSLFETLGNVAVAQPNV-FFDHSISESRIADYYNITTVDTFGSFSQVEKT-AA 260 ++ + + + + FD + R+ + + +++ G + AA Sbjct: 168 LRGDDDFLGVLRERTDATLTLHDAGAFDAGRATHRVREQFGDGVIESLGVAADGPVVRAA 227 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDY 320 AA+ YI ++ + + +D+ + NLE+ T++G + SLL TID+ Sbjct: 228 GAAVGYIAAADEGVLASVSRIQPFGGGDHVELDATTQRNLELTETMTGGSDGSLLATIDH 287 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + + AGGR A + P D +++ R ++ + + + +L D+ R SR Sbjct: 288 TASAAGGRRLAAWVTRPTRDRAELDRRQAAVGALADAALARDALGDVLGEIYDLERLASR 347 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKL-----KKLPQSLEKTL 435 GR + D+ +RD + + ++ + PE + + + L Sbjct: 348 AASGRADATDLLRVRDTLAALPDVADALTTT--PELAESPARDVLARVDRAAAADVRAEL 405 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + L+DD P +GG L+ G D +LDE + D+ + + L + + I +L++ Sbjct: 406 ADALADDPPKTLSEGGLLQAGYDEALDELLAAHDEHRAWLDGLADREKDRLGITHLQVDR 465 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+I+V +S + + R I + + N TR+T EL E + Sbjct: 466 NKTDGYYIQVGNSETDAVPDGEDGAYRRI--KQLKNATRYTMAELDSHEREVLRIEAERA 523 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E E F L + E++ L + + +A +D ++LA A + RP + + Sbjct: 524 ELERELFAALRERVGERAAVLQDVGRALAEVDALVSLAEHAAANQWVRPELVAGDGLDID 583 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+T F+ ND S + ++TGPNM GKST++RQ A+IV+ Sbjct: 584 AGRHPVVEQTTS------FVPNDARFDA-----SRRFQVVTGPNMSGKSTYMRQVAVIVL 632 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +AQ+GS+VPA A IG+VD +++RVG+ D LA GRSTFMVEM E + IL+ AT+ S V+L Sbjct: 633 LAQVGSFVPADAARIGLVDGIYTRVGALDELAGGRSTFMVEMEELSRILHAATSDSLVVL 692 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGTAT DG+SIAWA EYLH R L ATH+HELT L+ L N + + Sbjct: 693 DEVGRGTATYDGISIAWAATEYLHNEVRATTLFATHYHELTALADHLDAVVNVHVAAEER 752 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 + + FL V G D SYG+ V LAG+P V+ RA +L ++L N + + Sbjct: 753 DGAVTFLRTVRDGATDRSYGVHVAALAGVPEPVVDRARGVL---DRLREENAVEAKGSAG 809 Query: 856 E-IQT-------------KESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAW 900 E +Q + +++++ + L E SP+ L T V+AW Sbjct: 810 ESVQAVFDVDSGGFVDDAGDDGEADDPEAAAVLDELRTVELAETSPVELLGT---VQAW 865 >gi|289662777|ref|ZP_06484358.1| DNA mismatch repair protein MutS [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 815 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 255/812 (31%), Positives = 424/812 (52%), Gaps = 50/812 (6%) Query: 102 GHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRT 161 G +AICEQI P AK LV R VVR+VTPGT+T++ LL LMA++R + Sbjct: 38 GESVAICEQIGDPALAK-----GLVERKVVRIVTPGTVTDEALLDERRDTLLMAISRSKQ 92 Query: 162 EWAIAWIDISTGIFKISTSNH-DRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVA 220 + +AW D++ G F ++ + D L ++I R++P E++ +++ + G + Sbjct: 93 GYGLAWADLAGGRFLVNEVDSVDALEAEIARLEPAELLVPDED----NWPEFLR--GRIG 146 Query: 221 VAQ-PNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAISYIKKTQMVNKPTI 278 V + P FD ++ ++ + + FG AA A + Y+++TQ P + Sbjct: 147 VRRRPPWLFDADSGRRQLLAFFKLHDLSGFGIDDKPCATAAAGALLGYVEETQKQRLPHL 206 Query: 279 GYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPL 338 E + +++A R +LE+ + G +LL +D ++T GGRL + PL Sbjct: 207 TSIAMEVASEAISMNAATRRHLELDTRVDGDTRNTLLGVLDSTVTPMGGRLLRRWLHRPL 266 Query: 339 TDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 + R ++ I + +++ ++ D+ R L+R+ + P+D + +RDG+ Sbjct: 267 RLRDVLVQRHHAVGSLIDAGADAD-LREAFRALGDLERILTRVALRSARPRDFSTLRDGL 325 Query: 399 RSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK------TLSSMLSDDLPTFKRDGGF 452 + + D P +L+KL L + L S +++ P DGG Sbjct: 326 ALLPKVRTILAPLDSP--------RLQKLHAELGEHDATAHLLISAVAETPPLKLSDGGV 377 Query: 453 LRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASV 512 + G DA LDE R L + + + L+ + + I LK+ +N GY+IE++ A Sbjct: 378 IATGYDADLDELRRLSTNADQFLIDLEQRERASSGIATLKVGYNRVHGYYIEISKGQAE- 436 Query: 513 LKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQ 572 ++ + RQT++N R+ T EL E+++ +A +L E +E L +A+ + Sbjct: 437 -----KAPLHYSRRQTLTNAERYITEELKSFEDKVLSARERSLSREKLLYEGLLDALGTE 491 Query: 573 SESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSK 632 E L + ++ +D+ A A+ ++ +P +D++ ++ GRHP+VE Q Sbjct: 492 LEGLKRCAGALSELDVLAGFAERAQALDWSQPELDSAPCLRIERGRHPVVEAVRDQ---- 547 Query: 633 PFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGI 692 PF ND DL ND+ ++ ++TGPNMGGKST++RQNALIV++A +GSYVPAS A IG Sbjct: 548 PFEPNDLDLH--NDR---RMLVITGPNMGGKSTYMRQNALIVLLAHIGSYVPASRAVIGP 602 Query: 693 VDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAW 752 +D++ +R+G+ D+LA G+STFMVEM ET+ IL+ AT QS V++DEIGRGT+T DGL++A Sbjct: 603 IDRILTRIGAGDDLARGQSTFMVEMAETSYILHHATPQSLVLMDEIGRGTSTYDGLALAD 662 Query: 753 ATIEYLHETNRCRGLLATHFHELTDLSK-----SLKRFHNATLQVSDSNEGIIFLHKVIP 807 A +L TNRC L ATH+ ELT L+ N L + E ++F+H V Sbjct: 663 AVARHLAHTNRCYTLFATHYFELTALADESHAGGASGIANVHLDAVEHGERLVFMHAVKD 722 Query: 808 GIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLS 867 G A+ S+G+QV LAGLP +++A L E+ + ++ + + + Sbjct: 723 GPANRSFGLQVAALAGLPKAAVTQARRRLVELEQRGGESHS-AQMAPTALDAPQQFGLFT 781 Query: 868 KNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 E ++ L+ DE++P AL+ LY +KA Sbjct: 782 APSSAAQEALQALDPDELTPKQALEALYRLKA 813 >gi|257386437|ref|YP_003176210.1| DNA mismatch repair protein MutS [Halomicrobium mukohataei DSM 12286] gi|257168744|gb|ACV46503.1| DNA mismatch repair protein MutS [Halomicrobium mukohataei DSM 12286] Length = 914 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 267/849 (31%), Positives = 426/849 (50%), Gaps = 62/849 (7%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + +T ++ +++ +K+ + L+ + GDFYE F +DA + + L + ++++ H G Sbjct: 1 MTEATGIVGEFLSLKADSDADLLAMQCGDFYEFFDEDAEIVADELDLKVSQKSSH-GASY 59 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PM GVPV Y+ L++ G+R+A+ +Q E+ G+ R + R+VTPGT Sbjct: 60 PMAGVPVDDLTPYVSALVERGYRVAVADQHET-----ADGHA----REITRVVTPGTH-- 108 Query: 142 DQLLSPTD--SNYLMAV-----------ARIRTEWAIAWIDISTGIFKISTSN----HDR 184 L TD + YL AV A + +A D++TG F ++ + R Sbjct: 109 ---LETTDDAAQYLAAVVGTGGDSSDPVAGADGSYGLAVADVTTGQFHVTQLDGPDARTR 165 Query: 185 LISDIMRIDPREIIFSEKELSHAEY-KSLFETLGNVAVAQPNVFFDHSISESRIADYYNI 243 + +++ + DP E++ ++ L E F + R+ D++ Sbjct: 166 IQTELYKFDPAEVLPGPDLRGDDDFLDRLRERTDAALTVHTEESFAPGRARHRVRDHFGP 225 Query: 244 TTVDTFGSFSQVEKTAAAAAI-SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEI 302 TVD+ G AA A+ SY++ T + +I + + +D+ + NLE+ Sbjct: 226 ETVDSVGIADDDAAICAAGAVLSYVEDTGVGTLASITRLQSYGATDHVNLDATTQRNLEL 285 Query: 303 LRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILIN 362 T+ G + SL TID++ T AG RL E + P D ++ R I + + Sbjct: 286 TETMQGGTDGSLFDTIDHTATAAGARLLREWLQRPRRDRAELTRRQSCIAALTEAAMARE 345 Query: 363 PIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKND---LPEELRG 419 + + L + D+ R S+ G + +D+ + G S + + + D L Sbjct: 346 QLCETLSDAYDLERLASKAVSGSADARDLRAVA-GTLSLLETVEDVIDEDDRLADSPLAD 404 Query: 420 AVEKL-KKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASL 478 A+++L +++ L L + L DD P R GG G D LD + + + +L Sbjct: 405 ALDRLDREVVADLAAELDAALVDDPPGTVRQGGLFCRGYDEELDAVIERHEDALEWLETL 464 Query: 479 QLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTL 538 + E T I +L + N GY+I+V S A + DR+ + + N RFTT Sbjct: 465 PDREKETTGITHLSVDRNKTDGYYIQVGKSEAD------DVPDRYEGIKELKNSKRFTTD 518 Query: 539 ELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKE 598 EL + E + +E E F L + E + L +A +V+A +D +LAI A Sbjct: 519 ELQERERAVFRLEEQRHEMEYELFGDLRERVAEDATLLQDAGRVLAELDAVASLAIHAVR 578 Query: 599 QNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDL---SCPNDKN--SG--- 650 ++ RP + + V+ GRHP+VE+T + F+ ND + + P D+ SG Sbjct: 579 NDWTRPELTDGRELDVEAGRHPVVEQTTE------FVPNDLRMDGATSPPDQERASGHAD 632 Query: 651 ---KLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLA 707 + ++TGPNM GKST++RQ ALI ++AQ+GS+VPA A +G+VD +++RVG+ D LA Sbjct: 633 ADRQFLIVTGPNMSGKSTYMRQAALITLLAQVGSFVPARAATVGLVDGIYTRVGALDELA 692 Query: 708 SGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGL 767 GRSTFMVEM E ++IL+ AT+ S VILDE+GRGTAT DG+SIAWA EYLH R + L Sbjct: 693 QGRSTFMVEMQELSNILHSATDDSLVILDEVGRGTATYDGISIAWAATEYLHNEVRAKTL 752 Query: 768 LATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNT 827 ATH+HELT L+ L R HN + +S+ + FL V G D SYGI V LAG+P Sbjct: 753 FATHYHELTSLADHLDRVHNVHVAADESDGDVTFLRTVRDGPTDRSYGIHVADLAGVPEP 812 Query: 828 VISRAYDIL 836 V+ R+ +L Sbjct: 813 VVDRSRTVL 821 >gi|55379190|ref|YP_137040.1| DNA mismatch repair protein MutS [Haloarcula marismortui ATCC 43049] gi|55231915|gb|AAV47334.1| DNA mismatch repair protein MutS [Haloarcula marismortui ATCC 43049] Length = 1022 Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust. Identities = 256/841 (30%), Positives = 429/841 (51%), Gaps = 63/841 (7%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 + +T ++ +++ +K L+ + GDFYE F +DA + + L + ++++ H G Sbjct: 102 MTEATGIVGEFLTLKEGTDADLLAMQCGDFYEFFAEDAEIVADELDLKVSQKSSH-GSSY 160 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 PM GVPV Y+ L++ G+R+AI +Q E+ + G+ R + R+VTPGT E Sbjct: 161 PMAGVPVDDLTPYVSALVERGYRVAIADQHET-----ENGHA----REITRVVTPGTHLE 211 Query: 142 DQLLSPTDSNYLMAVARIRTE-----WAIAWIDISTGIFKIST---SNHDRLISDIMRID 193 + YL AV R + + IA D++TG F+++ ++ ++++ Sbjct: 212 ---TGDESAQYLAAVVREASRDSGDTYGIAATDVTTGQFQVTQLDDADAGEALTELYTFG 268 Query: 194 PREIIFSEKELSHAEYKSLFETLGNVAVA-QPNVFFDHSISESRIADYYNITTVDTFGSF 252 P EI+ + + E+ + A+ + F+ + + + + TVD+ G Sbjct: 269 PAEILPGPELRNDDEFLDRLRERTDAALTLHDSASFEPGRASHTVREQFGSETVDSVGIG 328 Query: 253 SQ-VEKTAAAAAISYIKKTQMVNKPTI----GYPEREDIQSTLFIDSAARSNLEILRTLS 307 Q V AA A +SY++ T + + Y ER+ + +D+ + NLE+ T+ Sbjct: 329 DQNVAVRAAGAVLSYVEDTGVGTLAAVTRLQAYGERDHVD----LDATTQRNLELTETMQ 384 Query: 308 GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI 367 G SL TID+++T AGGRL + + P + ++ R + + + I++ Sbjct: 385 GDSSGSLFDTIDHTVTAAGGRLLQQWLQRPRRNRAELQRRQSCVAALSEAAMARERIRET 444 Query: 368 LKSSPDVPRSLSRLKIGRGEPKDIAVIRDG------IRSGINILNLFLKNDLPEELRGAV 421 L + D+ R +R G + +D+ +++ + + ++ L + L GA Sbjct: 445 LSDAYDLERLAARATSGSADARDLRAVQETLALLGQVADAVTETERLAESPLADALDGAD 504 Query: 422 EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLK 481 ++ SL L S L D P R GG + G D LDE + + + +L + Sbjct: 505 ---REAADSLAAELDSALVADPPGTVRQGGLFKRGHDDDLDEIIDEHEAALEWLETLPDR 561 Query: 482 YAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELI 541 E T I +L + N GY+I+V S + + ++ H +T+ N R+TT EL Sbjct: 562 EKERTGITHLSVDRNKTDGYYIQVGKSETDAVPE------KYQHIKTLKNSKRYTTPELD 615 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 + E + +E E F+ L + E + L + + +A +D +LA+ A E ++ Sbjct: 616 EKERDVLRLEERRHDMEYEHFQRLRARVAEHATLLQDVGRTLAELDAFASLAVHAVENDW 675 Query: 602 CRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 RP + + ++ GRHP+VE+T + F+ ND L +D+ + ++TGPNM Sbjct: 676 ARPAVVDGNELSIEAGRHPVVEQTTE------FVPND--LYMDDDR---QFLIVTGPNMS 724 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKST++RQ ALI ++AQ+GS+VPA A +G+VD +F+RVG+ D LA GRSTFMVEM E + Sbjct: 725 GKSTYMRQAALITLLAQVGSFVPARSATVGLVDGIFTRVGALDELAQGRSTFMVEMQELS 784 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS 781 +IL+ AT +S VILDE+GRGTAT DG+SIAWA EY+ + + + L ATH+HELT L + Sbjct: 785 NILHSATEESLVILDEVGRGTATFDGISIAWAATEYIVNSIQSKTLFATHYHELTALGEE 844 Query: 782 LKRFHNATLQV------SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI 835 L N + V + S+ + FL V G D SYG+ V LAG+P V+ R+ + Sbjct: 845 LPTVENVHVAVDGEPRSAGSDGDVTFLRTVRDGPTDRSYGVHVADLAGVPEPVVDRSQAV 904 Query: 836 L 836 L Sbjct: 905 L 905 >gi|325283795|ref|YP_004256336.1| DNA mismatch repair protein MutS [Deinococcus proteolyticus MRP] gi|324315604|gb|ADY26719.1| DNA mismatch repair protein MutS [Deinococcus proteolyticus MRP] Length = 863 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 284/891 (31%), Positives = 454/891 (50%), Gaps = 88/891 (9%) Query: 27 PMMRQYI----EIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI- 81 PM++QY+ E++ P +L+ +++GDFYE F +DA A+R LG+ LT + KD Sbjct: 34 PMLQQYVAMRDEVQEEFPGALLLFQVGDFYETFGEDAERAARLLGLALTHKSS---KDFS 90 Query: 82 -PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 PM GVPV T + I+KL+ G R+A+ +Q+E P LV R V +L+TPGTLT Sbjct: 91 TPMAGVPVRTLDAQIEKLLGQGVRVAVADQVEEP-------GSGLVAREVTQLLTPGTLT 143 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREII 198 + + LS D NYL AVA +A+A +D+STG F+ + + H R L ++ R RE++ Sbjct: 144 DSRWLS-ADENYLAAVA-TGEGYALALLDVSTGEFRCA-AFHTRTALYDELSRWRTREVL 200 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYN--ITTVDTFGSFSQVE 256 + + + + F++ V ++ N FD + +E+ + T+D S Sbjct: 201 LAPELSGNGALLADFQSRFAVMLSPAN--FDEAAAEAELQAVLGELPGTLD-----SPAL 253 Query: 257 KTAAAAAISYIKKTQ-----MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 + A A + Y + TQ MV + T P DS R+ LE+ S + Sbjct: 254 RRACGAVLGYARLTQQGRLEMVRRLTRFQPG----AHMALPDSTLRA-LEVFAPHS-PQG 307 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 SL+ + + T G R + +PL D+ I R D + L ++ +L + Sbjct: 308 LSLMDVLCETRTAGGRRRLRAWLRAPLLDALSIAARQDGVETLFARADLRAGVRALLYRA 367 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIR---SGINILNLFLKNDLPEELRGAVEKLKKLP 428 D+ R +R+ R P+++A + + + +L+ + L L G +L+ LP Sbjct: 368 HDLERLAARVSTRRAVPREVAALARTLELLPEAVGLLHPY--GGL---LGGVRARLEALP 422 Query: 429 QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 ++ + L D+ P +GG +R+G A LD R+ + +A L++ E T I Sbjct: 423 DVVQ-AIRGALVDEPPIRAGEGGLIREGYSAELDTLRAEALAHRAYLADLEVTERERTGI 481 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 +LK+ N GY++EVT + + D + T+ + RFT +L + E I Sbjct: 482 PSLKVGFNGVFGYYLEVTRAHLDRVPPD------YHQVATLKDRARFTRPDLREREREIA 535 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 +A +EL+ F L + +++L A+ +A +D+ ALA +A + + RP++D Sbjct: 536 RLDAAAAALELQVFTELRATLAAHADALAEAAGALAELDVLAALAEVAAGRGWVRPVLDE 595 Query: 609 STNFIVKDGRHPIVEKTLKQQS-SKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 + + RHP+VE L Q F+ ND L P LLTGPNM GKST+L Sbjct: 596 TGQLQLTQARHPVVEYALSQGGQGGSFVPNDAALG-PGCHT----LLLTGPNMAGKSTYL 650 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 R AL ++ Q+G++VPA A + + D + +R+G++D+LA GRSTFMVEM E A+IL+ A Sbjct: 651 RTVALAALLHQIGAFVPAESAALPVYDAIHTRIGASDDLAGGRSTFMVEMTELATILHGA 710 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 T+QS VILDE+GRGT+TLDGL+IA A +E+LH L ATH+ ELT L L N Sbjct: 711 TSQSLVILDEVGRGTSTLDGLAIAQAALEHLHGCG-AHTLFATHYFELTRLDAELPGLVN 769 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ 847 + ++ + F H+VIPG A SYG++V +LAGLP V+ R+ ++L Sbjct: 770 LHVAAEEAGGNLTFFHQVIPGAARQSYGVEVARLAGLPAQVVGRSAELLAAL-------- 821 Query: 848 KDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 ++ +D+ +++ L+L ++PL AL L+ K Sbjct: 822 -----------------SVQGDDRAIRQELATLDLSRLTPLEALAVLHRWK 855 >gi|297580669|ref|ZP_06942595.1| DNA mismatch repair protein MutS [Vibrio cholerae RC385] gi|297535085|gb|EFH73920.1| DNA mismatch repair protein MutS [Vibrio cholerae RC385] Length = 688 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 233/713 (32%), Positives = 380/713 (53%), Gaps = 31/713 (4%) Query: 189 IMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDT 248 + R PRE++F E + + + GN +P F+ ++ ++ + + Sbjct: 1 MQRTSPRELLFPE---DFSPVHLMASSQGNRR--RPIWEFELDTAKQQLNQQFGTRDLVG 55 Query: 249 FG-SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS 307 FG +++ AA I Y+K TQ P I + ++ +D+A R NLE+ L+ Sbjct: 56 FGVEQAKLGLCAAGCLIQYVKDTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTHNLA 115 Query: 308 GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI 367 G + +L + +D+ T G R+ I P+ D+ +N RLD+I ++ L + + Sbjct: 116 GGTDNTLAEVLDHCATPMGSRMLKRWIHQPMRDNATLNQRLDAITE-LKETALYGELHPV 174 Query: 368 LKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLK 425 LK D+ R L+RL + P+D+A +R ++ + ++ LK ELR E + Sbjct: 175 LKQIGDIERILARLALRSARPRDLARLRHAMQQLPELHSVMSELKQPHLTELRTHAEPMN 234 Query: 426 KLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE 485 +L LE+ + ++ P RDGG + DG A LDE R L + + + L+ + + Sbjct: 235 ELCDLLERAIK----ENPPVVIRDGGVIADGYSAELDEWRDLANGATEFLERLEAEERDR 290 Query: 486 TKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 I LK+ +NN G++I+V+ + ++ ++ RQT+ N R+ EL E+ Sbjct: 291 HGIDTLKVGYNNVHGFYIQVSRGQSHLVPP------HYVRRQTLKNAERYIIEELKQHED 344 Query: 546 RITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPI 605 ++ N+ + AL +E + +E L + ++ E L + +A +D+ LA A+ YCRP Sbjct: 345 KVLNSKSRALALEKQLWEELFDLLLPHLEQLQQLAASVAQLDVLQNLAERAENLEYCRPT 404 Query: 606 IDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKST 665 + ++ GRHP+VE+ + ++PFIAN +L+ ++ ++TGPNMGGKST Sbjct: 405 LVQEAGIHIQGGRHPVVERVM----NEPFIANPIELNPQR-----RMLIITGPNMGGKST 455 Query: 666 FLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILN 725 ++RQ ALI +MA +GSYVPA A IG +D++F+R+G++D+LASGRSTFMVEM ETA+IL+ Sbjct: 456 YMRQTALIALMAHIGSYVPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILH 515 Query: 726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRF 785 AT S V++DEIGRGT+T DGLS+AWA+ E+L + L ATH+ ELT+L L Sbjct: 516 NATCNSLVLMDEIGRGTSTYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHL 575 Query: 786 HNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH 845 N L + +GI F+H V G A SYG+ V LAG+P VI A L+ E L Sbjct: 576 ANVHLDAVEHGDGIAFMHAVQEGAASKSYGLAVAGLAGVPKPVIKNARAKLQQLELLSSQ 635 Query: 846 NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + +I + S L + + ++ D+++P AL LY +K Sbjct: 636 PAETRKPGRVDIANQLS---LIPEPSAVEQALAGVDPDQLTPRQALDMLYQLK 685 >gi|258615128|ref|ZP_05712898.1| DNA mismatch repair protein MutS [Enterococcus faecium DO] Length = 786 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 254/812 (31%), Positives = 426/812 (52%), Gaps = 63/812 (7%) Query: 120 RGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST 179 + K +V+R V++LVTPGT+ + + LS D+N+L AV E+ A+ D+STG K + Sbjct: 2 KTTKGMVKREVIQLVTPGTVMDSKGLSAKDNNFLTAVVSQGNEFGFAYADLSTGELKTAR 61 Query: 180 -SNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIA 238 + + ++++ + +E++ E++ + L LG V Q + + E+ Sbjct: 62 LHDEEAVLNEASALQTKELVLG-SEITDTLREQLSGRLGLVFSQQ------NEMEENAEF 114 Query: 239 DYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARS 298 + VD +EK A ++Y+ TQ + I L +D ++ Sbjct: 115 SFLTSELVDP------LEKEATGKLLTYLSVTQKRSLAHIQKAVEYQPDHFLKMDYYSKF 168 Query: 299 NLEILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQN 357 NLE+ +++ +G + +LL +D + T GGRL + + PL + +I R + + + + Sbjct: 169 NLELSQSIRTGKKHGTLLWLLDETKTAMGGRLLKQWLDRPLIQAKQIKARQEMVASLLDS 228 Query: 358 PILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPE 415 +Q L D+ R R+ G +D+ ++ + I L + + Sbjct: 229 YFERIDLQSALTKVYDLERLAGRVAFGNVNGRDLIQLKTSLEQVPMIRGLIEGIDQGQWQ 288 Query: 416 ELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRII 475 L ++ + L Q +++ + DD P +G ++DG + LD RS K+ + Sbjct: 289 SLLSEMQPMDHLVQLIDQAIQ----DDPPLQITEGNIIKDGFNEQLDMYRSAMRNGKKWL 344 Query: 476 ASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRF 535 A L+ K +ET IKNLKI N GY+IE+T A++ +LE +R +QT++N RF Sbjct: 345 AELEAKERQETGIKNLKIGFNRVFGYYIEITK--ANLGNAELEKYER---KQTLANAERF 399 Query: 536 TTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAIL 595 T EL +LE +I A ++ +E + F + + + + L ++ I+ +D+ + A + Sbjct: 400 ITPELKELETQILEAEEKSVDLEYQLFLAVREEVKKAIQPLQVLAKAISAVDVLQSFATI 459 Query: 596 AKEQNYCRP-IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWL 654 ++ Y RP ++ + ++KDGRHP+VEK L Q +I N +++ + L Sbjct: 460 SERYQYVRPELVSDKHQLLIKDGRHPVVEKVLGHQE---YIPNSVEMA-----EDEMILL 511 Query: 655 LTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFM 714 +TGPNM GKST++RQ AL V+MAQMG +VPA A + I D++F+R+G++D+L +G+STFM Sbjct: 512 ITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLIAGQSTFM 571 Query: 715 VEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHE 774 VEM+E L AT S ++ DE+GRGTAT DG+++A A IEY+H + + L +TH+HE Sbjct: 572 VEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTLFSTHYHE 631 Query: 775 LTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYD 834 LT L K L + N + + + ++FLHK++ G AD SYGI V K+AGLP+ ++ RA D Sbjct: 632 LTVLEKELPQLKNVHVGAVEKDGEVVFLHKMMDGPADKSYGIHVAKIAGLPSNLLERAAD 691 Query: 835 ILKTFEKL--YHHN-----------QKDMRLYYP-------EIQTKESKNN--------L 866 IL T E HH K ++ P IQ + + N L Sbjct: 692 ILHTLENGDNGHHTVPAEVEEKTKTAKQEQIKPPAEKVNQDHIQDRVKEENQQLSLFSEL 751 Query: 867 SKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 S+N+ +E +K +NL EM+P+ AL TLY ++ Sbjct: 752 SENETEVIESLKQINLLEMTPMDALNTLYELQ 783 >gi|323159963|gb|EFZ45933.1| DNA mismatch repair protein MutS [Escherichia coli E128010] Length = 747 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 259/792 (32%), Positives = 411/792 (51%), Gaps = 68/792 (8%) Query: 128 RNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLI 186 R VVR+VTPGT++++ LL N L A+ + + A +DIS+G F++S ++ + + Sbjct: 2 RKVVRIVTPGTISDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMA 61 Query: 187 SDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTV 246 +++ R +P E++++E AE SL E + ++ I +R T Sbjct: 62 AELQRTNPAELLYAE---DFAEM-SLIEG---RRGLRRRPLWEFEIDTARQQLNLQFGTR 114 Query: 247 DTFGSFSQVEKT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLE 301 D G F VE AA + Y K TQ P I E Q ++ +D+A R NLE Sbjct: 115 DLVG-FG-VENAPRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLE 172 Query: 302 ILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILI 361 I + L+G E +L +D ++T G R+ + P+ D+ + R +I +Q+ Sbjct: 173 ITQNLAGGAENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGA-LQD--FT 229 Query: 362 NPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAV 421 +Q +L+ D+ R L+RL + P+D+A +R + LPE LR + Sbjct: 230 AELQPVLRQVGDLERILARLALRTARPRDLARMRHAFQQ------------LPE-LRAQL 276 Query: 422 EKLKKLP-----------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQ 470 E + P L L + D P RDGG + G + LDE R+L D Sbjct: 277 ETVDSAPVQALREKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADG 336 Query: 471 SKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMS 530 + + L+++ E T + LK+ N GY+I+++ + + + ++ RQT+ Sbjct: 337 ATDYLERLEVRERERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLK 390 Query: 531 NLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISI 590 N R+ EL + E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + Sbjct: 391 NAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLV 450 Query: 591 ALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSG 650 LA A NY P + + +GRHP+VE+ L + PFIAN +LS Sbjct: 451 NLAERAYTLNYTCPTFIDKPGIRITEGRHPVVEQVLNE----PFIANPLNLSPQR----- 501 Query: 651 KLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGR 710 ++ ++TGPNMGGKST++RQ ALI +MA +GSYVPA IG +D++F+RVG+AD+LASG Sbjct: 502 RMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGH 561 Query: 711 STFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLAT 770 STFMVEM ETA+IL+ AT S V++DEIGRGT+T DGLS+AWA E L + L AT Sbjct: 562 STFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFAT 621 Query: 771 HFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVIS 830 H+ ELT L + ++ N L + + I F+H V G A SYG+ V LAG+P VI Sbjct: 622 HYFELTQLPEKMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIK 681 Query: 831 RAYDILKTFEKLYHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSP 887 RA L+ E + + Q D T+ S ++ + VE ++ L+ D ++P Sbjct: 682 RARQKLRELESISPNAAATQVD--------GTQMSLLSVPEETSPAVEALENLDPDSLTP 733 Query: 888 LTALKTLYAVKA 899 AL+ +Y +K+ Sbjct: 734 RQALEWIYRLKS 745 >gi|254031629|gb|ACT54504.1| DNA mismatch recognition protein [Acinetobacter sp. 01B0] gi|254031664|gb|ACT54521.1| DNA mismatch recognition protein [Acinetobacter sp. P1-6] Length = 645 Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust. Identities = 243/674 (36%), Positives = 369/674 (54%), Gaps = 40/674 (5%) Query: 52 YELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQI 111 YELFF+DA LA++ LGITLT RGK G IPM GVP H+A Y+ +L+K G +AICEQ+ Sbjct: 1 YELFFEDAHLAAKLLGITLTHRGKANGNPIPMAGVPYHSAEGYLARLVKAGRTVAICEQV 60 Query: 112 ESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDIS 171 + K V R VVR++TPGTLT+D LL+ S+ L+A+ +++ A +D+S Sbjct: 61 ------GEVTGKGPVERKVVRILTPGTLTDDALLTSYQSSNLVALCIYQSQIGFALLDLS 114 Query: 172 TGIFKISTSNH--DRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFD 229 GIFK+ ++ ++L ++ R+ P EI+ E + + + + L +PNV F+ Sbjct: 115 AGIFKVQQQDYKPEQLPIELARLMPSEILIDEDLVDPNIIEQIKKHLDCPVTKRPNVDFN 174 Query: 230 HSISESRIADYYNITTVDTFGSFSQVE--KTAAAAAISYIKKTQMVNKPTIGYPEREDIQ 287 + ++ + D ++++T+ FG Q+ K AAAA I Y K+TQ P I E Sbjct: 175 LNNAQKTLCDQFSVSTLSGFG-LDQLPLAKAAAAALIHYAKETQKTALPHIRSILLEQSS 233 Query: 288 STLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTR 347 + +D R NLEI+ L SL + ++ T GGRL + + P+ D+ ++ R Sbjct: 234 DFIALDPITRRNLEIIEPLF-EHGTSLFQLVNDCQTAMGGRLLSRILMQPVRDTALLDAR 292 Query: 348 LDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL 407 LD+I IQ NP++ +LK D+ R LSR+ +G P+D+ +R Sbjct: 293 LDAIEQLIQG-YHENPVRMVLKEIGDIERVLSRVALGSARPRDLVQLRHACAQ-----IP 346 Query: 408 FLKNDLPEELRGAVEKL-KKLPQ------SLEKTLSSMLSDDLPTFKRDGGFLRDGADAS 460 FL+N L ++ KL +L Q +L + L + + ++ P RDG + +G DA Sbjct: 347 FLRNALAPVVQAKKSKLLGQLDQELGDFKALHQHLMAAIVENPPVLLRDGNVIAEGYDAE 406 Query: 461 LDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESK 520 LDE R +RD + + + L++K E T I LKI +N GY+IE+T + A D Sbjct: 407 LDELRQIRDHAGQFLIDLEIKERERTGISTLKIGYNRVSGYYIELTRAQAEQAPAD---- 462 Query: 521 DRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNAS 580 +I RQT+ N R+ T EL E+++ ++ + AL E FE L + E L S Sbjct: 463 --YIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKALFEALLENLRENIAHLQMMS 520 Query: 581 QVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCD 640 IA ID+ A A+ N+ RP T ++ GRHP+VE S PF ND Sbjct: 521 SAIAQIDVIANFAHQARLNNWARPEFTPETGIKIQGGRHPVVEAL----SKAPFTPNDTF 576 Query: 641 LSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRV 700 L + ++ ++TGPNMGGKSTF+RQ ALI ++A GSYVPA A +G +D++F+R+ Sbjct: 577 LDVQH-----RMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPARAAKLGPIDRIFTRI 631 Query: 701 GSADNLASGRSTFM 714 GSAD+L++G+STFM Sbjct: 632 GSADDLSTGKSTFM 645 >gi|167581373|ref|ZP_02374247.1| DNA mismatch repair protein [Burkholderia thailandensis TXDOH] Length = 725 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 238/738 (32%), Positives = 373/738 (50%), Gaps = 32/738 (4%) Query: 170 ISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQ-PNVFF 228 +++G +++ D+L + + RI P EI+ ++ + G A+ + P F Sbjct: 1 LASGALRLAEIAPDQLGAALERIRPAEILAADGAIEAV-------PAGTGAITRVPAWHF 53 Query: 229 DHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAIS-YIKKTQMVNKPTIGYPEREDIQ 287 D + R+ D + ++D FG+ + AA A+ Y TQ + + E+ Sbjct: 54 DIASGTQRLCDQLEVASLDGFGAQALTSANGAAGALLIYAAATQGQQLRHVRSLKVENES 113 Query: 288 STLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTR 347 + +D + R NLE+ TL G+ +L +D T G RL + P S R Sbjct: 114 EYIGLDPSTRRNLELTETLRGTESPTLYSLLDTCCTAMGSRLLRHWLHHPPRASVAAQAR 173 Query: 348 LDSINFFIQNPILI--NPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINIL 405 +I + P+ + + ++ L+ DV R RL + P+D++ +RD + + L Sbjct: 174 HQAIGALLDAPMHVGLDSLRSALRQIADVERITGRLALLSARPRDLSSLRDTF-AALPAL 232 Query: 406 NLFLKNDLPEELR-GAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDET 464 + P G +E + P L+ ++ + RDGG + G DA LDE Sbjct: 233 RERVAEIAPNAAALGRLEAALEPPPGCLDLLTRAIAPEPAAMVRDGGVIARGYDAELDEL 292 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 R + + + + L+ + T I NL++++N G++IEVT + D + Sbjct: 293 RDISENCGQFLIDLETRERARTGIPNLRVEYNKVHGFYIEVTRGQTDKVPDD------YR 346 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 RQT+ N R+ T EL E++ +A AL E ++ + A++ E + +A Sbjct: 347 RRQTLKNAERYITPELKTFEDKALSAQERALARERALYDSVLQALLPHIEGCQRVASGLA 406 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 +D+ A A A+ ++ P + + GRHP+VE ++Q FIANDC L+ Sbjct: 407 ELDLLAAFAERARTLDWVAPEFIDEIAIEIDQGRHPVVEAQVEQ-----FIANDCALN-- 459 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 +D+ KL L+TGPNMGGKSTF+RQ ALI +MA +GSYVPA A G +D++F+R+G+AD Sbjct: 460 SDR---KLLLITGPNMGGKSTFMRQTALIALMAYVGSYVPAKAARFGPIDRIFTRIGAAD 516 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 +LA GRSTFMVEM E A+ILN AT QS V++DEIGRGT+T DGL++AWA +L NRC Sbjct: 517 DLAGGRSTFMVEMTEAAAILNDATPQSLVLMDEIGRGTSTFDGLALAWAIARHLLSHNRC 576 Query: 765 RGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGL 824 L ATH+ ELT L + N L + GI+FLH V G A+ SYG+QV +LAG+ Sbjct: 577 YTLFATHYFELTQLPAEFPQAANVHLSAVEHGHGIVFLHAVEEGPANQSYGLQVAQLAGV 636 Query: 825 PNTVISRAYDILKTFEKLYHHN---QKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLN 881 P VI A L E+ Q D+ P + +E + +E++ L+ Sbjct: 637 PAPVIRAARKHLAHLEQQSAAQATPQLDLFAAQPIVDEQECNEPPAAAPHPALERLLALD 696 Query: 882 LDEMSPLTALKTLYAVKA 899 D++ P AL LY ++A Sbjct: 697 PDDLKPRDALDLLYELRA 714 >gi|254031651|gb|ACT54515.1| DNA mismatch recognition protein [Acinetobacter sp. 85A1] Length = 645 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 247/675 (36%), Positives = 370/675 (54%), Gaps = 42/675 (6%) Query: 52 YELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQI 111 YELFF+DA LA++ LGITLT RGK G IPM GVP H+A Y+ +L+K G +AICEQ+ Sbjct: 1 YELFFEDAHLAAKLLGITLTHRGKANGNPIPMAGVPYHSAEGYLARLVKAGRTVAICEQV 60 Query: 112 ESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDIS 171 + K V R VVR++TPGTLT+D LL+ S+ L+A+ + + A +D+S Sbjct: 61 ------GEVTGKGPVERKVVRILTPGTLTDDALLTSYQSSNLVALCIHQNQIGFALLDLS 114 Query: 172 TGIFKISTSNH--DRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFD 229 GIFK+ ++ ++L ++ R+ P EI+ E + + + + L +PNV F+ Sbjct: 115 AGIFKVQQQDYKPEQLPIELARLMPSEILIDEDLVDPNIIEQIKKHLDCPVTKRPNVDFN 174 Query: 230 HSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQS 288 + ++ + D ++++T+ FG + K AAAA I Y K+TQ P I E QS Sbjct: 175 LNNAQKTLCDQFSVSTLSGFGLDPLPLAKAAAAALIHYAKETQKTALPHIRSILLE--QS 232 Query: 289 TLFI--DSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINT 346 T FI D R NLEI+ L SL + ++ T GGRL + + P+ D+ ++ Sbjct: 233 TDFIALDPITRRNLEIIEPLF-EHGTSLFQLVNDCQTAMGGRLLSRTLMQPVRDTALLDA 291 Query: 347 RLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILN 406 RLD+I IQ +P++ +LK D+ R LSR+ +G P+D+ +R Sbjct: 292 RLDAIEQLIQG-YHESPVRLVLKEIGDIERVLSRVALGSARPRDLVQLRHACAQ-----I 345 Query: 407 LFLKNDLPEELRGAVEKL-KKLPQ------SLEKTLSSMLSDDLPTFKRDGGFLRDGADA 459 FL+N L ++ KL +L Q SL + L + + ++ P RDG + +G DA Sbjct: 346 PFLRNALAPVVQAKKSKLLGQLDQELGDFKSLHQHLMAAIVENPPVLLRDGNVIAEGYDA 405 Query: 460 SLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLES 519 LDE R +RD + + + L++K E T I LKI +N GY+IE+T + A D Sbjct: 406 ELDELRQIRDHAGQFLIDLEIKERERTGINTLKIGYNRVSGYYIELTRAQAEQAPAD--- 462 Query: 520 KDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNA 579 +I RQT+ N R+ T EL E+++ ++ + AL E FE L + E L Sbjct: 463 ---YIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKALFEALLENLRENIAHLQMM 519 Query: 580 SQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDC 639 S IA ID+ A A+ N+ RP T ++ GRHP+VE S PF ND Sbjct: 520 SSAIAQIDVIANFAHQARLNNWARPEFTPETGIKIQGGRHPVVEAL----SKAPFTPNDT 575 Query: 640 DLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSR 699 L + ++ ++TGPNMGGKSTF+RQ ALI ++A GSYVPA A +G +D++F+R Sbjct: 576 FLDAQH-----RMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPARAAKLGPIDRIFTR 630 Query: 700 VGSADNLASGRSTFM 714 +GSAD+L++G+STFM Sbjct: 631 IGSADDLSTGKSTFM 645 >gi|254031647|gb|ACT54513.1| DNA mismatch recognition protein [Acinetobacter sp. 71A1] Length = 645 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 242/673 (35%), Positives = 367/673 (54%), Gaps = 38/673 (5%) Query: 52 YELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQI 111 YELFF+DA LA++ LGITLT RGK G IPM GVP H+A Y+ +L+K G +AICEQ+ Sbjct: 1 YELFFEDAHLAAKLLGITLTHRGKANGNPIPMAGVPYHSAEGYLARLVKAGRTVAICEQV 60 Query: 112 ESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDIS 171 + K V R VVR++TPGTLT+D LL+ S+ L+A+ + + A +D+S Sbjct: 61 ------GEVTGKGPVERKVVRILTPGTLTDDALLTSYQSSNLVALCIHQNQIGFALLDLS 114 Query: 172 TGIFKISTSNH--DRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFD 229 GIFK+ ++ ++L ++ R+ P EI+ E + + + + L +PNV F+ Sbjct: 115 AGIFKVQQQDYKPEQLPIELARLMPSEILIDEDLVDPNIIEQIKKHLDCPVTKRPNVDFN 174 Query: 230 HSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQS 288 + ++ + D ++++T+ FG + K AAAA I Y K+TQ P I E Sbjct: 175 LNNAQKTLCDQFSVSTLSGFGLDPLPLAKAAAAALIHYAKETQKTALPHIRSILLEQSSD 234 Query: 289 TLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRL 348 + +D R NLEI+ L SL + ++ T GGRL + + P+ D+ ++ RL Sbjct: 235 FIALDPITRRNLEIIEPLF-EHGTSLFQLVNDCQTAMGGRLLSRTLMQPVRDTALLDARL 293 Query: 349 DSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF 408 D+I IQ +P++ +LK D+ R LSR+ +G P+D+ +R F Sbjct: 294 DAIEQLIQG-YHESPVRLVLKEIGDIERVLSRVALGSARPRDLVQLRHACAQ-----IPF 347 Query: 409 LKNDLPEELRGAVEKL-KKLPQ------SLEKTLSSMLSDDLPTFKRDGGFLRDGADASL 461 L+N L ++ KL +L Q SL + L + + ++ P RDG + +G DA L Sbjct: 348 LRNALATVVQAKKSKLLGQLDQELGDFKSLHQHLMAAIVENPPVLLRDGNVIAEGYDAEL 407 Query: 462 DETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKD 521 DE R +RD + + + L++K E T I LKI +N GY+IE+T + A D Sbjct: 408 DELRQIRDHAGQFLIDLEIKERERTGISTLKIGYNRVSGYYIELTRAQAEQAPAD----- 462 Query: 522 RFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQ 581 +I RQT+ N R+ T EL E+++ ++ + AL E FE L + E L S Sbjct: 463 -YIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKALFEALLENLRENIAHLQMMSS 521 Query: 582 VIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDL 641 IA ID+ A A+ N+ RP T ++ GRHP+VE S PF ND L Sbjct: 522 AIAQIDVIANFAHQARLNNWARPEFTPETGIKIQGGRHPVVEAL----SKAPFTPNDTFL 577 Query: 642 SCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVG 701 + ++ ++TGPNMGGKSTF+RQ ALI ++A GSYVPA A +G +D++F+R+G Sbjct: 578 DVQH-----RMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPARAAKLGPIDRIFTRIG 632 Query: 702 SADNLASGRSTFM 714 SAD+L++G+STFM Sbjct: 633 SADDLSTGKSTFM 645 >gi|162312436|ref|NP_593649.2| MutS protein homolog 1 [Schizosaccharomyces pombe 972h-] gi|6166561|sp|O13921|MSH1_SCHPO RecName: Full=MutS protein homolog 1 gi|159883946|emb|CAB11169.2| MutS protein homolog 1 [Schizosaccharomyces pombe] Length = 941 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 277/875 (31%), Positives = 452/875 (51%), Gaps = 101/875 (11%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 D ++ ++G+FYE++F+ A L + ++K+ K D+ M G P + Y++ L++ Sbjct: 76 DCVLLTKVGNFYEMYFEQAEKIGPLLNLRVSKK-KTSKSDVSMAGFPFFKLDRYLKILVE 134 Query: 101 -IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAV--- 156 + +A+ E++ P++ +K++ R+V R++TPGTL ++ ++P +SNY++ V Sbjct: 135 DLKKCVALSEEVIRPVD--DLSSKNMYIRSVTRVITPGTLIDENFMNPYESNYILTVVFD 192 Query: 157 -------------ARIRTEWA-----IAWIDISTGIFKISTSNHDRLISDIMRIDPREII 198 A + +A ++W+D+STG F SN RL D+ RI PREI+ Sbjct: 193 PNFFSSDISNQGTAEDKDCFADCKIGLSWLDLSTGEFFTQDSNLQRLAGDLTRISPREIV 252 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTF------GSF 252 E S F T + Q +F S E+R Y ++ + F SF Sbjct: 253 LDESLKS-------FTTHPIYSFIQERKYF-LSYVENR---YQSLDCWNKFLEKEIDPSF 301 Query: 253 ----SQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG 308 +++E TA ISYI + P I P R + + I +A LEI +L Sbjct: 302 IKYCTKLEVTAGCTLISYIADRLQNSHPNIQPPIRVSLNEYMIIGESAMKGLEIRSSLYQ 361 Query: 309 SR-EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI 367 +R SLL I+ ++T +G RL R+ +P T+ +IN RLD + F P L + + + Sbjct: 362 NRYTGSLLHAINKTVTKSGSRLLTRRLCAPSTNIVEINNRLDLVEKFKLLPELCSKVINL 421 Query: 368 LKSSPDVPRSLSRLKIGRGEPKDIAVIRD--GIRSGIN---------------ILNLFLK 410 LK S D R L L +GRG D+ + D I I+ +LN+ Sbjct: 422 LKKSNDTHRILQHLLMGRGNSYDLLKMADNFSITKEIHSLLSPLESSSAFRLLLLNMHPH 481 Query: 411 NDLPEELRGAVEKLKKLPQSL-EKTLSSMLSDDLPTFKRDGG----FLRDGADASLDETR 465 ++L + + AV++ + Q + E+ + +++ + +D ++ + D + Sbjct: 482 DELKQLINNAVDENALMKQKINEEEETEVIAQEAEEILQDENAQVEIVKKSLSSEFDIRQ 541 Query: 466 SLRDQS----------KRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKK 515 S ++ +++ LQ +A K++ + LG + S A + Sbjct: 542 SFKENWVVKSNFNNNLRKLHEKLQSLFASYDKLQE---DLSKRLGKKATLRKSPAKLYYV 598 Query: 516 DL-----ESKDRFIHRQTMSNLTRFT----TLELIDLENRITNATNSALLIELESFEIL- 565 L E+ +RFI + T + L + T + +L + + N+ L I E +L Sbjct: 599 HLKLSGNETIERFIKKFTQAVLFQSTKSTASFQLPGWTSLGMDLENTKLHIHQEEQRVLK 658 Query: 566 --SNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 ++ I+ ++L + + + +DIS +LA LA+EQ++ RP++D+S V GRHPIVE Sbjct: 659 SITDEIVSHHKTLRSLANALDELDISTSLATLAQEQDFVRPVVDDSHAHTVIQGRHPIVE 718 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 K L + PF NDC + N +WL+TGPNM GKSTFLRQNA+I I+AQ+GS+V Sbjct: 719 KGLSHKLI-PFTPNDCFVGNGN----VNIWLITGPNMAGKSTFLRQNAIISILAQIGSFV 773 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PAS A IGIVD++FSR+GSADNL +STFMVEM+ET+ IL AT +SFVI+DEIGRGT Sbjct: 774 PASNARIGIVDQIFSRIGSADNLYQQKSTFMVEMMETSFILKNATRRSFVIMDEIGRGTT 833 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRF--HNATLQVSDSNEGIIF 801 DG++IA+ ++YL N R L ATH H+LT+L+KS K + L + + F Sbjct: 834 ASDGIAIAYGCLKYLSTINHSRTLFATHAHQLTNLTKSFKNVECYCTNLSIDRDDHTFSF 893 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 +K+ G+ S+G++V ++AG+P V+ A ++L Sbjct: 894 DYKLKKGVNYQSHGLKVAEMAGIPKNVLLAAEEVL 928 >gi|254031641|gb|ACT54510.1| DNA mismatch recognition protein [Acinetobacter sp. 62A1] Length = 645 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 244/674 (36%), Positives = 369/674 (54%), Gaps = 40/674 (5%) Query: 52 YELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQI 111 YELFF+DA LA++ LGITLT RGK G+ IPM GVP H A Y+ +L+K G +AICEQ+ Sbjct: 1 YELFFEDAHLAAKLLGITLTHRGKASGRPIPMAGVPYHAAEGYLARLVKAGRTVAICEQV 60 Query: 112 ESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDIS 171 + K V R VVR++TPGTLT+D LLS S+ L+++ + + A +D+S Sbjct: 61 ------GEVTGKGPVDRQVVRILTPGTLTDDALLSSYQSSNLVSLCIHQNQIGFALLDLS 114 Query: 172 TGIFKISTSNH--DRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFD 229 GIFK+ ++ ++L ++ R+ P EI+ E + + + + L +PNV F+ Sbjct: 115 AGIFKVQQQDYKPEQLPIELARLMPSEILIDEDLVDTNIIEQIKKHLECPVTKRPNVDFN 174 Query: 230 HSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQS 288 + ++ + D + ++T+ FG + K AAAA I Y K+TQ P I + E QS Sbjct: 175 QNNAQKTLCDQFTVSTLSGFGLDPLPLAKAAAAALIHYAKETQKTALPHIRSIQLE--QS 232 Query: 289 TLFI--DSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINT 346 T FI D R NLEI+ L SL + ++ T GGRL + + P+ D+ ++ Sbjct: 233 TDFIALDPITRRNLEIIEPLF-DHGTSLFQLVNDCQTAMGGRLLSRTLMQPVRDTALLDG 291 Query: 347 RLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG------IRS 400 RLD+I IQ +P++ +LK D+ R LSR+ +G P+D+ +R +R+ Sbjct: 292 RLDAIEQLIQG-YHESPVRLVLKEIGDIERVLSRVALGSARPRDLVQLRHACAQIPALRT 350 Query: 401 GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADAS 460 + + K+ L +L + K L Q L + + ++ P RDG + +G DA Sbjct: 351 ALTPVIQAKKSKLLVQLDQELGDFKALHQHL----MAAIVENPPVLLRDGNVIAEGYDAD 406 Query: 461 LDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESK 520 LDE R +RD + + + L++K E T I LKI +N GY+IE+T + A D Sbjct: 407 LDELRQIRDHAGQFLIDLEIKERERTGINTLKIGYNRVSGYYIELTRAQAEQAPAD---- 462 Query: 521 DRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNAS 580 +I RQT+ N R+ T EL E+++ ++ + AL E FE L + E L S Sbjct: 463 --YIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKALFEALLENLRENIAHLQMMS 520 Query: 581 QVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCD 640 IA ID+ A A+ N+ RP T ++ GRHP+VE K PF ND Sbjct: 521 SAIAQIDVVANFAHQARLNNWARPEFTPETGIKIQAGRHPVVEALNK----APFTPNDTF 576 Query: 641 LSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRV 700 L + ++ ++TGPNMGGKSTF+RQ ALI ++A GSYVPA A +G +D++F+R+ Sbjct: 577 LDAQH-----RMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPAKAAKLGPIDRIFTRI 631 Query: 701 GSADNLASGRSTFM 714 GSAD+L++G+STFM Sbjct: 632 GSADDLSTGKSTFM 645 >gi|254031635|gb|ACT54507.1| DNA mismatch recognition protein [Acinetobacter sp. 48A1] Length = 645 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 246/675 (36%), Positives = 370/675 (54%), Gaps = 42/675 (6%) Query: 52 YELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQI 111 YELFF+DA LA++ LGITLT RGK G IPM GVP H+A Y+ +L+K G +AICEQ+ Sbjct: 1 YELFFEDAHLAAKLLGITLTHRGKANGNPIPMAGVPYHSAEGYLARLVKAGRTVAICEQV 60 Query: 112 ESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDIS 171 + K V R VVR++TPGTLT+D LL+ S+ L+A+ + + A +D+S Sbjct: 61 ------GEVTGKGPVERKVVRILTPGTLTDDALLTSYQSSNLVALCIHQNQIGFALLDLS 114 Query: 172 TGIFKISTSNH--DRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFD 229 GIFK+ ++ ++L ++ R+ P EI+ E + + + + L +PNV F+ Sbjct: 115 AGIFKVQQQDYKPEQLPIELARLMPSEILIDEDLVDTNIIEQIKKHLDCPVTKRPNVDFN 174 Query: 230 HSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQS 288 + ++ + D ++++T+ FG + K AAAA I Y K+TQ P I E QS Sbjct: 175 LNNAQKTLCDQFSVSTLSGFGLDPLPLAKAAAAALIHYAKETQKTALPHIRSILLE--QS 232 Query: 289 TLFI--DSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINT 346 T FI D R NLEI+ L SL + ++ T GGRL + + P+ D+ ++ Sbjct: 233 TDFIALDPITRRNLEIIEPLF-EHGTSLFQLVNDCQTAMGGRLLSRTLMQPVRDTALLDA 291 Query: 347 RLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILN 406 RLD+I IQ +P++ +LK D+ R LSR+ +G P+D+ +R Sbjct: 292 RLDAIEQLIQG-YHESPVRLVLKEIGDIERVLSRVALGSARPRDLVQLRHACAQ-----I 345 Query: 407 LFLKNDLPEELRGAVEKL-KKLPQ------SLEKTLSSMLSDDLPTFKRDGGFLRDGADA 459 FL+N L ++ KL +L Q +L + L + + ++ P RDG + +G DA Sbjct: 346 PFLRNALAPVVQAKKSKLLGQLDQELGDFKALHQHLMAAIVENPPVLLRDGNVIAEGYDA 405 Query: 460 SLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLES 519 LDE R +RD + + + L++K E T I LKI +N GY+IE+T + A D Sbjct: 406 ELDELRQIRDHAGQFLIDLEIKERERTGISTLKIGYNRVSGYYIELTRAQAEQAPAD--- 462 Query: 520 KDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNA 579 +I RQT+ N R+ T EL E+++ ++ + AL E FE L + E L Sbjct: 463 ---YIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKALFEALLENLRENIAHLQMM 519 Query: 580 SQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDC 639 S IA ID+ A A+ N+ RP T ++ GRHP+VE S PF ND Sbjct: 520 SSAIAQIDVIANFAHQARLNNWARPEFTPETGIKIQGGRHPVVEAL----SKAPFTPNDT 575 Query: 640 DLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSR 699 L + ++ ++TGPNMGGKSTF+RQ ALI ++A GSYVPA A +G +D++F+R Sbjct: 576 FLDVQH-----RMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPARAAKLGPIDRIFTR 630 Query: 700 VGSADNLASGRSTFM 714 +GSAD+L++G+STFM Sbjct: 631 IGSADDLSTGKSTFM 645 >gi|254031658|gb|ACT54518.1| DNA mismatch recognition protein [Acinetobacter baumannii] Length = 645 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 245/675 (36%), Positives = 371/675 (54%), Gaps = 42/675 (6%) Query: 52 YELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQI 111 YELFF+DA LA++ LGITLT RGK G IPM GVP H+A Y+ +L+K G +AICEQ+ Sbjct: 1 YELFFEDAHLAAKLLGITLTHRGKANGNPIPMAGVPYHSAEGYLARLVKAGRTVAICEQV 60 Query: 112 ESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDIS 171 + K V R VVR++TPGTLT+D LL+ S+ L+A+ + + A +D+S Sbjct: 61 ------GEVTGKGPVERKVVRILTPGTLTDDALLTSYQSSNLVALCIHQNQIGFALLDLS 114 Query: 172 TGIFKISTSNH--DRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFD 229 GIFK+ ++ ++L ++ R+ P EI+ E + + + + L +PNV F+ Sbjct: 115 AGIFKVQQQDYKPEQLPIELARLMPSEILIDEDLVDPNIIEQIKKHLDCPVTKRPNVDFN 174 Query: 230 HSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQS 288 + ++ + D ++++T+ FG + K AAAA I Y K+TQ P I E QS Sbjct: 175 LNNAQKTLCDQFSVSTLSGFGLDPLPLAKAAAAALIHYAKETQKTALPHIRSILLE--QS 232 Query: 289 TLFI--DSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINT 346 T FI D R NLEI+ L SL + ++ T GGRL + + P+ D+ ++ Sbjct: 233 TDFIALDPITRRNLEIIEPLF-EHGTSLFQLVNDCQTAMGGRLLSRTLMQPVRDTALLDA 291 Query: 347 RLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILN 406 RLD+I IQ +P++ +LK D+ R LSR+ +G P+D+ +R Sbjct: 292 RLDAIEQLIQG-YHESPVRLVLKEIGDIERVLSRVALGSARPRDLVQLRHACAQ-----I 345 Query: 407 LFLKNDLPEELRGAVEKL-KKLPQ------SLEKTLSSMLSDDLPTFKRDGGFLRDGADA 459 FL+N L ++ KL +L Q +L + L + + ++ P RDG + +G DA Sbjct: 346 PFLRNALAPVVQAKKSKLLGQLDQELGDFKALHQHLMAAIVENPPVLLRDGNVIAEGYDA 405 Query: 460 SLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLES 519 LDE R +RD + + + L++K E T I LKI +N GY+IE+T + A ++ Sbjct: 406 ELDELRQIRDHAGQFLIDLEIKERERTGISTLKIGYNRVSGYYIELTRAQAE------QA 459 Query: 520 KDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNA 579 +I RQT+ N R+ T EL E+++ ++ + AL E FE L + E L Sbjct: 460 PANYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKALFEALLENLRENIAHLQMM 519 Query: 580 SQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDC 639 S IA ID+ A A+ N+ RP T ++ GRHP+VE S PF ND Sbjct: 520 SSAIAQIDVIANFAHQARLNNWARPEFTPETGIKIQGGRHPVVEAL----SKAPFTPNDT 575 Query: 640 DLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSR 699 L + ++ ++TGPNMGGKSTF+RQ ALI ++A GSYVPA A +G +D++F+R Sbjct: 576 FLDVQH-----RMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPARAAKLGPIDRIFTR 630 Query: 700 VGSADNLASGRSTFM 714 +GSAD+L++G+STFM Sbjct: 631 IGSADDLSTGKSTFM 645 >gi|254031662|gb|ACT54520.1| DNA mismatch recognition protein [Acinetobacter calcoaceticus] Length = 645 Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust. Identities = 243/674 (36%), Positives = 369/674 (54%), Gaps = 40/674 (5%) Query: 52 YELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQI 111 YELFF+DA LA++ LGITLT RGK G+ IPM GVP H A Y+ +L+K G +AICEQ+ Sbjct: 1 YELFFEDAHLAAKLLGITLTHRGKASGRPIPMAGVPYHAAEGYLARLVKAGRTVAICEQV 60 Query: 112 ESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDIS 171 + K V R VVR++TPGTLT+D LLS S+ L+++ + + A +D+S Sbjct: 61 ------GEVTGKGPVDRKVVRILTPGTLTDDALLSSYQSSNLVSLCIHQNQIGFALLDLS 114 Query: 172 TGIFKISTSNH--DRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFD 229 GIFK+ ++ ++L ++ R+ P EI+ E + + + + L +PNV F+ Sbjct: 115 AGIFKVQQQDYKPEQLPIELARLMPSEILIDEDLVDTNIIEQIKKHLDCPVTKRPNVDFN 174 Query: 230 HSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQS 288 + ++ + D + ++T+ FG + K AAAA I Y K+TQ P I + E QS Sbjct: 175 QNNAQKTLCDQFTVSTLSGFGLDPLPLAKAAAAALIHYAKETQKTALPHIRSIQLE--QS 232 Query: 289 TLFI--DSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINT 346 T FI D R NLEI+ L SL + ++ T GGRL + + P+ D+ ++ Sbjct: 233 TDFIALDPITRRNLEIIEPLF-EHGTSLFQLVNDCQTAMGGRLLSRTLMQPVRDTALLDA 291 Query: 347 RLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG------IRS 400 RLD+I IQ +P++ +LK D+ R LSR+ +G P+D+ +R +R+ Sbjct: 292 RLDAIEQLIQG-YHESPVRLVLKEIGDIERVLSRVALGSARPRDLVQLRHACAQIPALRT 350 Query: 401 GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADAS 460 + + K+ L +L + K L Q L + + ++ P RDG + +G DA Sbjct: 351 ALTPVIQAKKSKLLVQLDQELGDFKALHQHL----MAAIVENPPVLLRDGNVIAEGYDAD 406 Query: 461 LDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESK 520 LDE R +RD + + + L++K E T I LKI +N GY+IE+T + A D Sbjct: 407 LDELRQIRDHAGQFLIDLEIKERERTGINTLKIGYNRVSGYYIELTRAQAEQAPAD---- 462 Query: 521 DRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNAS 580 +I RQT+ N R+ T EL E+++ ++ + AL E FE L + E L S Sbjct: 463 --YIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKALFEALLENLRENIAHLQMMS 520 Query: 581 QVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCD 640 IA ID+ A A+ N+ RP T ++ GRHP+VE K PF ND Sbjct: 521 SAIAQIDVVANFAHQARLNNWARPEFTPETGIKIQAGRHPVVEALNK----APFTPNDTF 576 Query: 641 LSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRV 700 L + ++ ++TGPNMGGKSTF+RQ ALI ++A GSY+PA A +G +D++F+R+ Sbjct: 577 LD-----SQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSYIPAKAAKLGPIDRIFTRI 631 Query: 701 GSADNLASGRSTFM 714 GSAD+L++G+STFM Sbjct: 632 GSADDLSTGKSTFM 645 >gi|254031643|gb|ACT54511.1| DNA mismatch recognition protein [Acinetobacter sp. 63A1] Length = 645 Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust. Identities = 243/674 (36%), Positives = 369/674 (54%), Gaps = 40/674 (5%) Query: 52 YELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQI 111 YELFF+DA LA++ LGITLT RGK G+ IPM GVP H A Y+ +L+K G +AICEQ+ Sbjct: 1 YELFFEDAHLAAKLLGITLTHRGKASGRPIPMAGVPYHAAEGYLARLVKAGRTVAICEQV 60 Query: 112 ESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDIS 171 + K V R VVR++TPGTLT+D LLS S+ L+++ + + A +D+S Sbjct: 61 ------GEVTGKGPVDRQVVRILTPGTLTDDALLSSYQSSNLVSLCIHQNQIGFALLDLS 114 Query: 172 TGIFKISTSNH--DRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFD 229 GIFK+ ++ ++L ++ R+ P EI+ E + + + + L +PNV F+ Sbjct: 115 AGIFKVQQQDYKPEQLPIELARLMPSEILIDEDLVDTNIIEQIKKHLECPVTKRPNVDFN 174 Query: 230 HSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQS 288 + ++ + D + ++T+ FG + K AAAA I Y K+TQ P I + E QS Sbjct: 175 QNNAQKTLCDQFTVSTLSGFGLDPLPLAKAAAAALIHYAKETQKTALPHIRSIQLE--QS 232 Query: 289 TLFI--DSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINT 346 T FI D R NLEI+ L SL + ++ T GGRL + + P+ D+ ++ Sbjct: 233 TDFIALDPITRRNLEIIEPLF-DHGTSLFQLVNDCQTAMGGRLLSRTLMQPVRDTALLDG 291 Query: 347 RLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG------IRS 400 RLD+I IQ +P++ +LK D+ R LSR+ +G P+D+ +R +R+ Sbjct: 292 RLDAIEQLIQG-YHESPVRLVLKEIGDIERVLSRVALGSARPRDLVQLRHACAQIPALRT 350 Query: 401 GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADAS 460 + + K+ L +L + K L Q L + + ++ P RDG + +G DA Sbjct: 351 ALTPVIQAKKSKLLVQLDQELGDFKALHQHL----MAAIVENPPVLLRDGNVIAEGYDAD 406 Query: 461 LDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESK 520 LDE R +RD + + + L++K E T I LKI +N GY+IE+T + A D Sbjct: 407 LDELRQIRDHAGQFLIDLEIKERERTGINTLKIGYNRVSGYYIELTRAQAEQAPAD---- 462 Query: 521 DRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNAS 580 +I RQT+ N R+ T EL E+++ ++ + AL E FE L + E L S Sbjct: 463 --YIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKALFEALLENLRENIAHLQMMS 520 Query: 581 QVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCD 640 +A ID+ A A+ N+ RP T ++ GRHP+VE K PF ND Sbjct: 521 SAVAQIDVVANFAHQARLNNWARPEFTPETGIKIQAGRHPVVEALNK----APFTPNDTF 576 Query: 641 LSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRV 700 L + ++ ++TGPNMGGKSTF+RQ ALI ++A GSYVPA A +G +D++F+R+ Sbjct: 577 LDAQH-----RMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPAKAAKLGPIDRIFTRI 631 Query: 701 GSADNLASGRSTFM 714 GSAD+L++G+STFM Sbjct: 632 GSADDLSTGKSTFM 645 >gi|254031645|gb|ACT54512.1| DNA mismatch recognition protein [Acinetobacter sp. 66A1] Length = 645 Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust. Identities = 246/675 (36%), Positives = 370/675 (54%), Gaps = 42/675 (6%) Query: 52 YELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQI 111 YELFF+DA LA++ LGITLT RGK G IPM GVP H+A Y+ +L+K G +AICEQ+ Sbjct: 1 YELFFEDAHLAAKLLGITLTHRGKANGNPIPMAGVPYHSAEGYLARLVKAGRTVAICEQV 60 Query: 112 ESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDIS 171 + K V R VVR++TPGTLT+D LL+ S+ L+A+ + + A +D+S Sbjct: 61 ------GEVTGKGPVERKVVRILTPGTLTDDALLTSYQSSNLVALCIHQNQIGFALLDLS 114 Query: 172 TGIFKISTSNH--DRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFD 229 GIFK+ ++ ++L ++ R+ P EI+ E + + + + L +PNV F+ Sbjct: 115 AGIFKVQQQDYKPEQLPIELARLMPSEILIDEDLVDPNIIEQIKKHLDCPVTKRPNVDFN 174 Query: 230 HSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQS 288 + ++ + D ++++T+ FG + K AAAA I Y K+TQ P I E QS Sbjct: 175 LNNAQKTLCDQFSVSTLSGFGLDPLPLAKAAAAALIHYAKETQKTALPHIRSILLE--QS 232 Query: 289 TLFI--DSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINT 346 T FI D R NLEI+ L SL + ++ T GGRL + + P+ D+ ++ Sbjct: 233 TDFIALDPITRRNLEIIEPLF-EHGTSLFQLVNDCQTAMGGRLLSRILMQPVRDTALLDA 291 Query: 347 RLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILN 406 RLD+I IQ +P++ +LK D+ R LSR+ +G P+D+ +R Sbjct: 292 RLDAIEQLIQG-YHESPVRLVLKEIGDIERVLSRVALGSARPRDLVQLRHACAQ-----I 345 Query: 407 LFLKNDLPEELRGAVEKL-KKLPQ------SLEKTLSSMLSDDLPTFKRDGGFLRDGADA 459 FL+N L ++ KL +L Q +L + L + + ++ P RDG + +G DA Sbjct: 346 PFLRNALAPVVQAKKSKLLGQLDQELGDFKALHQHLMAAIVENPPVLLRDGNVIAEGYDA 405 Query: 460 SLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLES 519 LDE R +RD + + + L++K E T I LKI +N GY+IE+T + A D Sbjct: 406 ELDELRQIRDHAGQFLIDLEIKERERTGISTLKIGYNRVSGYYIELTRAQAEQAPAD--- 462 Query: 520 KDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNA 579 +I RQT+ N R+ T EL E+++ ++ + AL E FE L + E L Sbjct: 463 ---YIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKALFEALLENLRENIAHLQMM 519 Query: 580 SQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDC 639 S IA ID+ A A+ N+ RP T ++ GRHP+VE S PF ND Sbjct: 520 SSAIAQIDVIANFAHQARLNNWARPEFTPETGIKIQGGRHPVVEAL----SKAPFTPNDT 575 Query: 640 DLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSR 699 L + ++ ++TGPNMGGKSTF+RQ ALI ++A GSYVPA A +G +D++F+R Sbjct: 576 FLDVQH-----RMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPARAAKLGPIDRIFTR 630 Query: 700 VGSADNLASGRSTFM 714 +GSAD+L++G+STFM Sbjct: 631 IGSADDLSTGKSTFM 645 >gi|212541162|ref|XP_002150736.1| DNA mismatch repair protein Msh1, putative [Penicillium marneffei ATCC 18224] gi|210068035|gb|EEA22127.1| DNA mismatch repair protein Msh1, putative [Penicillium marneffei ATCC 18224] Length = 1005 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 270/894 (30%), Positives = 446/894 (49%), Gaps = 112/894 (12%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 + +V R+G FYEL+++ A + L I L + + G +PM G P + +++ L++ Sbjct: 102 NCVVLTRVGSFYELYWEQAEELAPLLNIKLASKKTNAGP-VPMAGFPFFQLDRFLKILVQ 160 Query: 101 -IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARI 159 + +A+ E+ +P+E K + L R V R++TPGTL ++ + + +N+L+++ I Sbjct: 161 DLQKYVALSEEFLNPVEEKSKSGGLLFDRRVTRVITPGTLIDENFIDTSQNNFLLSLY-I 219 Query: 160 RTEW-------------------------AIAWIDISTGIFKISTSNHDRLISDIMRIDP 194 T + +AW+D+STG F + L S I RI Sbjct: 220 DTTYFEGQSPEGDRSSSITHLLSSSTGRVGLAWMDLSTGDFYTQVTTTQMLPSAIARIGA 279 Query: 195 REIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTV----DTFG 250 REI+ +++ L + + L +G Q FFD + ++++ + +T Sbjct: 280 REIV-ADQRLQNLLAQELQMLVG--VDHQLLTFFDAPTTAQPMSEWGEMLEAPVPSETAS 336 Query: 251 SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGS 309 +F+ E A + Y++ + P R + ++ ID ++ LEIL T G Sbjct: 337 TFTNEEVAAGFNLLEYVRVQLQGVGTKLQPPRRRHLDESMGIDRSSLRGLEILETARDGL 396 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 + SLL + + T +G RL +R+ SP T + I RLD + +F+Q+ + + I +LK Sbjct: 397 GKGSLLHAVRRTATKSGARLLRDRLISPSTSLSVIQERLDLVTYFLQDEEIRDTIISLLK 456 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINIL----------------------NL 407 S D R + + +GRG+P D+ + I + +L NL Sbjct: 457 RSYDSQRLVQKFTLGRGDPDDLIYLSRAIEASREVLRALSNRQTNPTSETDTNRQSVDNL 516 Query: 408 FLK------NDLPEELRGAVEK---LKK-------LPQSLEKTLSSMLSDDLPT------ 445 + L E++ A+++ L+K ++ + T +LS+ LP Sbjct: 517 IRRLHLDGPTQLAEKILAAIDEEALLQKHRIEDSQAAEAAQLTQDVVLSEGLPEDVESMP 576 Query: 446 ----FKRDG--GFLRDGADASLDETRSLRDQS---KRIIASLQLKYAEETKIKN------ 490 FK G GF D +D RD S +R+ L E++ + N Sbjct: 577 RKVRFKTTGRPGFAVDSIRGDIDIWIMRRDASNALRRLHERLDELEEEKSALTNRLQEDA 636 Query: 491 ----LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHR--QTMSNLTRFTTLELIDLE 544 L +K + +LGY V A + ++ LE D + R + + F L Sbjct: 637 GSSALTLKWSPSLGYICHV--KGAKISQEALE--DLGVTRIVSSTKSTRSFYLPAWSQLG 692 Query: 545 NRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP 604 R+ E + FE L +I + + V+ +D++ + A LAKEQ+ RP Sbjct: 693 ERLDKLKKHIRAEEQQIFEELRREVILNLVKIRRNASVMDELDVACSFATLAKEQSMVRP 752 Query: 605 IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 I++ T+ + GRHP V+ L++Q + F++NDC + + ++WL+TGPNMGGKS Sbjct: 753 ILNTGTSHRIVGGRHPTVKLGLEEQGRR-FVSNDCFIG-----DEERIWLITGPNMGGKS 806 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 TFLRQNALI I+AQ+GS+VPA YA IGIVD++FSR+G+AD+L +STFMVEM+ETA+IL Sbjct: 807 TFLRQNALITILAQVGSFVPAEYAEIGIVDQVFSRIGAADDLFRDQSTFMVEMLETAAIL 866 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR 784 QAT +SFVI+DE+GRGT DG ++ +A +E+L+ N+CR L ATHFH L D++ ++ Sbjct: 867 KQATPRSFVIMDEVGRGTTPEDGTAVGYACLEHLYNVNQCRTLFATHFHALIDMTVGFEK 926 Query: 785 FHNATLQVSDSNEG-IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILK 837 V +S G F+HK+ G+ S+ ++V +LAGLP I+ A ++L+ Sbjct: 927 LSAYCTDVKESPSGSFSFVHKLRKGVNRQSHALKVARLAGLPEAAITVAENVLR 980 >gi|254031649|gb|ACT54514.1| DNA mismatch recognition protein [Acinetobacter sp. 81A1] Length = 645 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 246/675 (36%), Positives = 370/675 (54%), Gaps = 42/675 (6%) Query: 52 YELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQI 111 YELFF+DA LA++ LGITLT RGK G IPM GVP H+A Y+ +L+K G +AICEQ+ Sbjct: 1 YELFFEDAHLAAKLLGITLTHRGKANGNPIPMAGVPYHSAEGYLARLVKAGRTVAICEQV 60 Query: 112 ESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDIS 171 + K V R VVR++TPGTLT+D LL+ S+ L+A+ + + A +D+S Sbjct: 61 ------GEVTGKGPVERKVVRILTPGTLTDDALLTSYQSSNLVALCIHQNQIGFALLDLS 114 Query: 172 TGIFKISTSNH--DRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFD 229 GIFK+ ++ ++L ++ R+ P EI+ E + + + + L +PNV F+ Sbjct: 115 AGIFKVQQQDYKPEQLPIELARLMPSEILIDEDLVDPNIIEQIKKHLDCPVTKRPNVDFN 174 Query: 230 HSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQS 288 + ++ + D ++++T+ FG + K AAAA I Y K+TQ P I E QS Sbjct: 175 INNAQKTLCDQFSVSTLSGFGLDPLPLAKAAAAALIHYAKETQKTALPHIRSILLE--QS 232 Query: 289 TLFI--DSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINT 346 T FI D R NLEI+ L SL + ++ T GGRL + + P+ D+ ++ Sbjct: 233 TDFIALDPITRRNLEIIEPLF-EHGTSLFQLVNDCQTAMGGRLLSRILMQPVRDTALLDA 291 Query: 347 RLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILN 406 RLD+I IQ +P++ +LK D+ R LSR+ +G P+D+ +R Sbjct: 292 RLDAIEQLIQG-YHESPVRLVLKEIGDIERVLSRVALGIARPRDLVQLRHACAQ-----I 345 Query: 407 LFLKNDLPEELRGAVEKL-KKLPQ------SLEKTLSSMLSDDLPTFKRDGGFLRDGADA 459 FL+N L ++ KL +L Q +L + L + + ++ P RDG + +G DA Sbjct: 346 PFLRNALAPVVQAKKSKLLGQLDQELGDFKALHQHLMAAIVENPPVLLRDGNVIAEGYDA 405 Query: 460 SLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLES 519 LDE R +RD + + + L++K E T I LKI +N GY+IE+T + A D Sbjct: 406 ELDELRQIRDHAGQFLIDLEIKERERTGISTLKIGYNRVSGYYIELTRAQAEQAPAD--- 462 Query: 520 KDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNA 579 +I RQT+ N R+ T EL E+++ ++ + AL E FE L + E L Sbjct: 463 ---YIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKALFEALLENLRENIAHLQMM 519 Query: 580 SQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDC 639 S IA ID+ A A+ N+ RP T ++ GRHP+VE S PF ND Sbjct: 520 SSAIAQIDVIANFAHQARLNNWARPEFTPETGIKIQGGRHPVVEAL----SKAPFTPNDT 575 Query: 640 DLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSR 699 L + ++ ++TGPNMGGKSTF+RQ ALI ++A GSYVPA A +G +D++F+R Sbjct: 576 FLDVQH-----RMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPARAAKLGPIDRIFTR 630 Query: 700 VGSADNLASGRSTFM 714 +GSAD+L++G+STFM Sbjct: 631 IGSADDLSTGKSTFM 645 >gi|254031639|gb|ACT54509.1| DNA mismatch recognition protein [Acinetobacter sp. 56A1] gi|254031653|gb|ACT54516.1| DNA mismatch recognition protein [Acinetobacter sp. A06(2009)] Length = 645 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 244/674 (36%), Positives = 369/674 (54%), Gaps = 40/674 (5%) Query: 52 YELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQI 111 YELFF+DA LA++ LGITLT RGK G IPM GVP H+A Y+ +L+K G +AICEQ+ Sbjct: 1 YELFFEDAHLAAKLLGITLTHRGKANGNPIPMAGVPYHSAEGYLARLVKAGRTVAICEQV 60 Query: 112 ESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDIS 171 + K V R VVR++TPGTLT+D LLS S+ L+++ + + A +D+S Sbjct: 61 ------GEVTGKGPVDRKVVRILTPGTLTDDALLSSYQSSNLVSLCIHQNQIGFALLDLS 114 Query: 172 TGIFKISTSNH--DRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFD 229 GIFK+ ++ ++L ++ R+ P EI+ E + + + + L +PNV F+ Sbjct: 115 AGIFKVQQQDYKPEQLPIELARLMPSEILIDEDLVDTNIIEQIKKHLECPVTKRPNVDFN 174 Query: 230 HSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQS 288 + ++ + D + ++T+ FG + K AAAA I Y K+TQ P I + E QS Sbjct: 175 LNNAQKTLCDQFTVSTLSGFGLDPLPLAKAAAAALIHYAKETQKTALPHIRSIQLE--QS 232 Query: 289 TLFI--DSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINT 346 T FI D R NLEI+ L SL + ++ T GGRL + + P+ D+ ++ Sbjct: 233 TDFIALDPITRRNLEIIEPLF-EHGTSLFQLVNDCQTAMGGRLLSRTLMQPVRDTALLDA 291 Query: 347 RLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG------IRS 400 RLD+I IQ +P++ +LK D+ R LSR+ +G P+D+ +R +R+ Sbjct: 292 RLDAIEQLIQG-YHESPVRLVLKEIGDIERVLSRVALGSARPRDLVQLRHACAQIPALRT 350 Query: 401 GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADAS 460 + + K+ L +L + K L Q L + + ++ P RDG + +G DA Sbjct: 351 ALTPVIQAKKSKLLVQLDQELGDFKALHQHL----MAAIVENPPVLLRDGNVIAEGYDAD 406 Query: 461 LDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESK 520 LDE R +RD + + + L++K E T I LKI +N GY+IE+T + A D Sbjct: 407 LDELRQIRDHAGQFLIDLEIKERERTGINTLKIGYNRVSGYYIELTRAQAEQAPAD---- 462 Query: 521 DRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNAS 580 +I RQT+ N R+ T EL E+++ ++ + AL E FE L + E L S Sbjct: 463 --YIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKALFEALLENLRENIAHLQMMS 520 Query: 581 QVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCD 640 IA ID+ A A+ N+ RP T ++ GRHP+VE K PF ND Sbjct: 521 SAIAQIDVVANFAHQARLNNWARPEFTPETGIKIQAGRHPVVEALNK----APFTPNDTF 576 Query: 641 LSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRV 700 L + ++ ++TGPNMGGKSTF+RQ ALI ++A GSYVPA A +G +D++F+R+ Sbjct: 577 LDAHH-----RMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPAKAAKLGPIDRIFTRI 631 Query: 701 GSADNLASGRSTFM 714 GSAD+L++G+STFM Sbjct: 632 GSADDLSTGKSTFM 645 >gi|254031660|gb|ACT54519.1| DNA mismatch recognition protein [Acinetobacter sp. AZR54] Length = 645 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 242/674 (35%), Positives = 368/674 (54%), Gaps = 40/674 (5%) Query: 52 YELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQI 111 YELFF+DA LA++ LGITLT RGK G+ IPM GVP H A Y+ +L+K G +AICEQ+ Sbjct: 1 YELFFEDAHLAAKLLGITLTHRGKASGRPIPMAGVPYHAAEGYLARLVKAGRTVAICEQV 60 Query: 112 ESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDIS 171 + K V R VVR++TPGTLT+D LLS S+ L+++ + + A +D+S Sbjct: 61 ------GEVTGKGPVDRKVVRILTPGTLTDDALLSSYQSSNLVSLCIHQNQIGFALLDLS 114 Query: 172 TGIFKISTSNH--DRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFD 229 GIFK+ ++ ++L ++ R+ P EI+ E + + + + L +PNV F+ Sbjct: 115 AGIFKVQQQDYKPEQLPIELARLMPSEILIDEDLVDTNIIEQIKKHLDCPVTKRPNVDFN 174 Query: 230 HSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQS 288 + ++ + D + ++T+ FG + K AAAA I Y K+TQ P I + E QS Sbjct: 175 QNNAQKTLCDQFTVSTLSGFGLDPLPLAKAAAAALIHYAKETQKTALPHIRSIQLE--QS 232 Query: 289 TLFI--DSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINT 346 T FI D NLEI+ L SL + ++ T GGRL + + P+ D+ ++ Sbjct: 233 TDFIALDPITHRNLEIIEPLF-EHGTSLFQLVNDCQTAMGGRLLSRTLMQPVRDTALLDA 291 Query: 347 RLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG------IRS 400 RLD+I IQ +P++ +LK D+ R LSR+ +G P+D+ +R +R+ Sbjct: 292 RLDAIEQLIQG-YHESPVRLVLKEIGDIERVLSRVALGSARPRDLVQLRHACAQIPALRT 350 Query: 401 GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADAS 460 + + K+ L +L + K L Q L + + ++ P RDG + +G DA Sbjct: 351 ALTPVIQTKKSKLLVQLDQELGDFKALHQHL----MAAIVENPPVLLRDGNVIAEGYDAD 406 Query: 461 LDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESK 520 LDE R +RD + + + L++K E T I LKI +N GY+IE+T + A D Sbjct: 407 LDELRQIRDHAGQFLIDLEIKERERTGINTLKIGYNRVSGYYIELTRAQAEQAPAD---- 462 Query: 521 DRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNAS 580 +I RQT+ N R+ T EL E+++ ++ + AL E FE L + E L S Sbjct: 463 --YIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKALFEALLENLRENIAHLQMMS 520 Query: 581 QVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCD 640 IA ID+ A A+ N+ RP T ++ GRHP+VE K PF ND Sbjct: 521 SAIAQIDVVANFAHQARLNNWARPEFTPETGIKIQAGRHPVVEALNK----APFTPNDTF 576 Query: 641 LSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRV 700 L + ++ ++TGPNMGGKSTF+RQ ALI ++A GSY+PA A +G +D++F+R+ Sbjct: 577 LD-----SQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSYIPAKAAKLGPIDRIFTRI 631 Query: 701 GSADNLASGRSTFM 714 GSAD+L++G+STFM Sbjct: 632 GSADDLSTGKSTFM 645 >gi|317121911|ref|YP_004101914.1| DNA mismatch repair protein MutS [Thermaerobacter marianensis DSM 12885] gi|315591891|gb|ADU51187.1| DNA mismatch repair protein MutS [Thermaerobacter marianensis DSM 12885] Length = 1087 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 223/595 (37%), Positives = 336/595 (56%), Gaps = 36/595 (6%) Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSITG 324 Y+++TQ V+ + + + L ID+ +R NLE++R L GSR+ +LL +D + T Sbjct: 354 YLRETQKVDLDHLRRLRTDPLGQWLAIDANSRRNLELVRRLRDGSRQGTLLDVLDLTETA 413 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIG 384 G RL + I PL D + RLD++ + +P L + ++++L D+PR L R+ Sbjct: 414 MGRRLLRQWIERPLVDRDAVEDRLDAVEALVADPFLRSDLRRLLAGVQDLPRLLGRVGYQ 473 Query: 385 RGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVE-----KLKKLPQSLEKTLSSM- 438 + +D+ GI + L +L L GA+ +L+ + L+ L+ + Sbjct: 474 QANARDLL----GIARSLERLP-----ELAARLDGALNGRRGGRLEAVRAGLDPDLAELG 524 Query: 439 ------LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 L DD P +GG +RDG +DE R + + IA+L+ + E T IK+LK Sbjct: 525 TRLRAALVDDPPVTVTEGGLIRDGFHPEVDELRRATREGRDWIAALEARERERTGIKSLK 584 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 + N GY+IEVT ++ ++ D E RQT++ RF T EL D+E+RI A Sbjct: 585 VGFNKVFGYYIEVTRANRHLVPADYE------RRQTLAGAERFVTPELKDVESRILGAEE 638 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 +E F L + L A+ +A +D+ ALA A Y RP I Sbjct: 639 RLAALEHRLFIELRQEVAAAIPRLQVAADALAELDVLAALAEAAARYGYVRPKITTDRRL 698 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 +K GRHP++++TL + F+ ND DL D ++ L+TGPNM GKSTF+RQ AL Sbjct: 699 RIKAGRHPVLDRTLGGR----FVPNDVDL----DGQDERVMLITGPNMAGKSTFMRQVAL 750 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 IVIMAQMGS+VPA+ A IG+VD++F RVG++D+LASG+STFMVE+ ETA ++ AT +S Sbjct: 751 IVIMAQMGSFVPAAEAEIGLVDRIFCRVGASDDLASGQSTFMVEVAETALAVHNATPRSL 810 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 ++LDEIGRGT+T DG++IA A IEY+H+ R L++TH+HELT L+ + N +V Sbjct: 811 ILLDEIGRGTSTFDGIAIARAVIEYVHDRIGARTLVSTHYHELTGLAATRPGIRNYHARV 870 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ 847 + + + FL +++PG AD SYGI V +LAGLP ++ RA IL ++ Q Sbjct: 871 VEEGDTVRFLWRIVPGGADRSYGINVARLAGLPVEIVERAKAILAELDRRSGPRQ 925 Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 68/132 (51%), Positives = 89/132 (67%), Gaps = 7/132 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMMRQY E K PD ++F+R+GDFYE+F DDA LA+R L ITLT R G+ +PMCG Sbjct: 38 TPMMRQYREWKERYPDCILFFRLGDFYEMFGDDARLAARILDITLTSRETAKGERVPMCG 97 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H + Y+ +L++ G+R+AICEQ+E P R + LVRR VVR+VTPGTL Sbjct: 98 VPYHAVDQYLPRLVEAGYRVAICEQVEDP-----RLARGLVRREVVRVVTPGTLW--AAT 150 Query: 146 SPTDSNYLMAVA 157 +S Y+ A+A Sbjct: 151 GQEESRYVAALA 162 >gi|254031631|gb|ACT54505.1| DNA mismatch recognition protein [Acinetobacter sp. 26B2] Length = 645 Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust. Identities = 237/670 (35%), Positives = 370/670 (55%), Gaps = 32/670 (4%) Query: 52 YELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQI 111 YELFF+DA A++ LGITLT RGK G+ IPM GVP H A Y+ +L+K G + ICEQI Sbjct: 1 YELFFEDAHKAAKILGITLTHRGKANGQPIPMAGVPYHAAEGYLARLVKKGETVVICEQI 60 Query: 112 ESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDIS 171 + K V R VVR++TPGTLT+D +L S+ L+A+ +++ IA +D+S Sbjct: 61 ------GEVTGKGPVERGVVRIITPGTLTDDAMLGAHQSSNLVALCIQQSQIGIALLDLS 114 Query: 172 TGIFKISTSNHD--RLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFD 229 G+FK+ ++D +L+ ++ R+ P EI+ E + L + L +PNV F+ Sbjct: 115 AGLFKVQQQDYDLNQLMIELARLMPSEILLDENIADPTLTEQLKQQLDISLTKRPNVDFN 174 Query: 230 HSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQS 288 + ++ + D + ++T+ FG + K AAAA I Y K+TQ P I + E Sbjct: 175 LNNAQKTLCDQFAVSTLSGFGIDHLPLAKAAAAALIHYAKETQKTALPHIRTIQLEQSSD 234 Query: 289 TLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRL 348 + +D R NLE++ L SL + I+ T GGRL + + PL D+ ++ RL Sbjct: 235 FIALDPVTRRNLELIEPLF-EHGTSLFQLINDCQTAMGGRLLSRTLMQPLRDTALLDERL 293 Query: 349 DSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF 408 D+I +Q + P++ +LK D+ R LSR+ +G P+D+ +R + I L Sbjct: 294 DAIQALLQGFHEV-PVRLVLKEISDIERVLSRIALGSARPRDLVQLRQAC-AQIPFLRHA 351 Query: 409 LKNDLPEE----LRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDET 464 L+ + ++ L E+L L + L S + ++ P RDG + +G D+ LDE Sbjct: 352 LQPIVSQQQSKLLVQLNEELGDF-HDLHQRLMSAIVENPPVLLRDGNVIAEGFDSELDEL 410 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 R +RD + + + L++K E++ I LKI +N GY+IE+T + A ++ + +I Sbjct: 411 RQIRDHASQFLIDLEIKEREQSGIPGLKIGYNRVSGYYIELTRAQAE------QAPEHYI 464 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 RQT+ N R+ T EL E+++ ++ + AL E FE+L + + + SL S IA Sbjct: 465 RRQTLKNAERYITPELKAFEDKVLSSESRALAREKMLFEMLLDELRQDIGSLQMMSSAIA 524 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 ID+ A A+ +N+ RP + GRHP+VE S F ND L Sbjct: 525 QIDLIANFAHQARLRNWSRPKFSPEIGVSITAGRHPVVEAL----SKSAFTPNDTRLDF- 579 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 S ++ ++TGPNMGGKSTF+RQ ALIV++A G+YVPA A +G VD++F+R+GSAD Sbjct: 580 ----SHRMAIITGPNMGGKSTFMRQTALIVLLAYCGAYVPAQAATLGPVDRVFTRIGSAD 635 Query: 705 NLASGRSTFM 714 +L++G+STFM Sbjct: 636 DLSTGKSTFM 645 >gi|296806091|ref|XP_002843865.1| MutS2 protein [Arthroderma otae CBS 113480] gi|238845167|gb|EEQ34829.1| MutS2 protein [Arthroderma otae CBS 113480] Length = 973 Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust. Identities = 276/916 (30%), Positives = 444/916 (48%), Gaps = 119/916 (12%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 + ++ R+G+FYEL+ A + L + L + K G +PM G P + +++ L++ Sbjct: 65 NCVLLTRVGNFYELYLHQAEEYASLLNLKLAYK-KTAGGAVPMAGFPYFQLDRFLKVLVQ 123 Query: 101 -IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAV--- 156 + +AI E+ + AK + R V R+VTPGTL +++ + +NYL+A+ Sbjct: 124 EMKKNVAISEEFANDAAAKAMSGGLMFDRRVARIVTPGTLIDEKFIDQCQNNYLLAIHVN 183 Query: 157 ------------ARIRTEW---------AIAWIDISTGIFKISTSNHDRLISDIMRIDPR 195 R ++ +AW+DISTG F ++ L S I RI R Sbjct: 184 PSFVTDQHDTDDGVTRGQFRCLPESESIGLAWLDISTGDFLTQNTSPQMLPSAITRIAAR 243 Query: 196 EIIFSEK--ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNI--TTVDTFGS 251 EI+ + E AE ++L QP +F ++++ + + + T + Sbjct: 244 EILVDQSVGESIRAELEALV-----AHEHQPITYFQCPKIMRPLSEWNSCFDSPIPTKAA 298 Query: 252 --FSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SG 308 F+ E++A + Y+KK + P R+ + + ID + LEIL T G Sbjct: 299 SMFTPQEESACKMILEYVKKQMKNTDVRLQPPRRKLTEDFMSIDRNSLRGLEILETARDG 358 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKIL 368 + SLL + + T +G RL ER+ SP IN RLD ++ I++ L + I + L Sbjct: 359 FGKGSLLHAVRRTSTSSGARLLRERLTSPSASLGVINERLDLVSLLIEDDELRDNIMRSL 418 Query: 369 KSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFL------------------- 409 K S D R + + +GRG P D+ + I + +I ++ Sbjct: 419 KRSYDTQRLIQKFSLGRGLPDDLICLSRAINASSSIKSILKQKFTDTESLVRDQPTSSPH 478 Query: 410 KNDLPEELRGAVEKLKKLPQSLEKTLSS------------------------MLSDDLPT 445 K+ LP R +E L+ L Q ++ ++ +LS+ LP Sbjct: 479 KSMLPLLHRFNLEGLEDLSQRIQDSIDEERLLQQQRVEENAAADDSALAHDVLLSEGLPA 538 Query: 446 -----------FKRDGGFLRDGADASLDETRSLRDQSKRII----ASLQLKYAEETKI-- 488 K DG + D D T +R + + + +L+ Y E+TK+ Sbjct: 539 DLEAMPKRVKDSKTDGPKGTNEPDTPSDITWIMRRDASKTLRNLHETLESLYCEKTKLTK 598 Query: 489 --------KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 +L +K LG+ + + + A +K L+S + + F Sbjct: 599 ELQLTLDTPHLSLKWTPGLGHIVHIKGAKA--MKSSLDSLGVTRTVSSSKSTRSFYLASW 656 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 L ++ N E F+ L +A+I L + V+ +D++ + A LAKEQ Sbjct: 657 TQLGAKLENMKQQIRAEEQNIFKALRHAVILNLVKLRRNAGVLDELDVACSFATLAKEQG 716 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 RPI++N N + GRHP V+ +++Q +PF++NDC + DK ++ L+TGPNM Sbjct: 717 MVRPIVNNGLNHKIIGGRHPTVKLGVEEQG-RPFVSNDCFV---GDKE--RILLITGPNM 770 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GKSTFLRQNALI I+AQ+GSYVPA YA IG+VDK+FSR+G+AD+L +STFMVEM+ET Sbjct: 771 AGKSTFLRQNALITILAQVGSYVPAEYAEIGLVDKIFSRIGAADDLFRDQSTFMVEMLET 830 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 ASIL AT +SFVI+DE+GRGT DG ++ +A + +LH N+ R L ATHFH L D++ Sbjct: 831 ASILKHATPRSFVIMDEVGRGTTPEDGTAVGFACLHHLHNENKSRTLFATHFHVLADMTA 890 Query: 781 SLKRFHNATLQV-SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILK-- 837 + + DS+ G ++HK+ PG+ S+ ++V +LAGLP +VI A +++ Sbjct: 891 DFEHLGRYCTDLKEDSSGGFSYIHKLKPGVNRQSHALKVAQLAGLPPSVIEVANGMIQKM 950 Query: 838 --TFEKLYHHNQKDMR 851 T +L H Q + R Sbjct: 951 TATGTELGHRVQDNYR 966 >gi|76800921|ref|YP_325929.1| DNA mismatch repair protein MutS [Natronomonas pharaonis DSM 2160] gi|76556786|emb|CAI48360.1| DNA mismatch repair protein MutS 1 [Natronomonas pharaonis DSM 2160] Length = 877 Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust. Identities = 270/918 (29%), Positives = 445/918 (48%), Gaps = 91/918 (9%) Query: 25 STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMC 84 ++ ++ +Y E+++ L+ +MGDFYE F +DA L L + +++R G+ M Sbjct: 2 ASGIVGEYFELRASASADLLAMQMGDFYEFFGEDAELVGDELDLKVSERSSG-GESYAMA 60 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 GVPV Y++ L + G+R+A+ +Q E+ + +VR V R VTPGTL E Sbjct: 61 GVPVDDLTPYLKALAERGYRVAVADQRET--------DDGIVR-EVTRTVTPGTLVE--- 108 Query: 145 LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNH----DRLISDIMRIDPREIIFS 200 D+ YL +V E+ +A DI+TG F+ + + DR ++++ R P E++ Sbjct: 109 TDDADAKYLASVVYENNEYGLALCDITTGQFRATAVSGPDAADRALTELYRFGPVELLPG 168 Query: 201 EKELSHAEY-KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 + + L E L F + +R+ + + VD G S A Sbjct: 169 PTVRTDDSFLGQLRERLDGRLTLHDTDAFAPGRARARLGEQFG-DAVDAVGLESDAAVAA 227 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 A A I Y+ +T + +I + + +D + NLE+ ++ Q+L T+D Sbjct: 228 AGAVIDYVDETGVGALASITRLQAYAPDDHVSLDGTTQRNLELTEPMTEGG-QTLFATVD 286 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 ++ T AG RL + PL +++ R ++ + + + +++ L S+ D+ R S Sbjct: 287 HTETSAGRRLLEAWLKRPLKRRGELDRRQQAVAALVGDALAREALRETLSSAYDLERVAS 346 Query: 380 RLKIGRGEP-------KDIAVIRDGIRSGIN---------ILNLFLKNDLPEELRGAVEK 423 R G + + + ++ D +R+ I+ + +LF D VE Sbjct: 347 RAVAGNADADALLRARETLGLVED-LRTRIDDAARLSSSPVADLFADLD--------VEA 397 Query: 424 LKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 ++ L LE L+DD P +GG +R G D LD+ + + +L + Sbjct: 398 VETLRSELEA-----LADDPPKTLHEGGLIRRGYDEELDDLVERHETAVEWFETLAEREK 452 Query: 484 EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDL 543 + ++ + N GY+I+V S + D + +T+ N R+ EL + Sbjct: 453 RAHGLTHVTVDRNKTDGYYIQVGKSETDAVP------DHYEGIKTLKNAERYVFEELREK 506 Query: 544 ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCR 603 E I E E+F L ++ + +E L + +A +D+ +LA A + + R Sbjct: 507 EREILRLEEVRGDREYEAFCRLRESVADSAELLQRVGRTLAELDVYCSLAAHAAKHGWTR 566 Query: 604 PIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 P + ++ ++ GRHP+VE ++ F+ ND L D+ + L+TGPNM GK Sbjct: 567 PELTDTRAIDIEAGRHPVVETEVQ------FVPNDLYL----DRER-RFLLVTGPNMSGK 615 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 ST++RQ ALI ++AQ+GS+VPA A +G+VD +F+RVG+ D LA GRSTFMVEM E ++I Sbjct: 616 STYMRQAALITLLAQVGSFVPADSARVGLVDGVFTRVGALDELAQGRSTFMVEMEELSNI 675 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLK 783 L+ AT S VILDE+GRGTAT DG+SIAWA EYLH L ATH+HELT L+ L Sbjct: 676 LHSATEDSLVILDEVGRGTATYDGISIAWAATEYLHNEVGAFTLFATHYHELTTLADELP 735 Query: 784 RFHNATLQVS----DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF 839 R N + V+ D + + FL V PG D SYG+ V LAG+P+ V+ RA +L Sbjct: 736 RVENVHVAVAGDPEDGDGDVTFLRTVEPGATDRSYGVHVADLAGVPDPVVDRAGAVLSRL 795 Query: 840 EKLYHHNQKDMRLYYP--------EIQTKESKNNLSKNDK---------LFVEKIKCLNL 882 + K P + Q +E+ +N + +D+ V+++ L + Sbjct: 796 REDRAVEAKGGDSGEPVQTVFDLSDGQFRENGDNSADSDEGGELDPETAAVVDELADLEV 855 Query: 883 DEMSPLTALKTLYAVKAW 900 DE P ++ + V+ W Sbjct: 856 DETPP---VELMARVQEW 870 >gi|328773240|gb|EGF83277.1| hypothetical protein BATDEDRAFT_85840 [Batrachochytrium dendrobatidis JAM81] Length = 952 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 269/883 (30%), Positives = 440/883 (49%), Gaps = 82/883 (9%) Query: 14 EQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELF----FDDALLASRCLGIT 69 + I L ++ + TP+M++ +++ NP+ ++ ++G FYE++ + D + L I Sbjct: 92 DTISLIQSETTLTPLMQEISDLQKHNPEHILLVQVGSFYEIYDIGGYLDEIAGLLSLRIA 151 Query: 70 LTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRN 129 T +GK + M G P+H Y+ LI G +A+ +Q+ +KS VR Sbjct: 152 -TMKGKR--DPVRMAGFPMHCYKDYVTSLINNGKTVALVQQVGKDYSIS---SKSFVRA- 204 Query: 130 VVRLVTPGTLTEDQLLSPTDSNYLMAVARI--------RTEWAIAWIDISTGIFKISTSN 181 V R++TPGT+ +D + S N + +++ +AW+D+STG F + SN Sbjct: 205 VTRIITPGTMIDDNMASDVAENSFLLSIVSPVVVSSLQKSKIGLAWMDVSTGEFFTAQSN 264 Query: 182 HDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFD-HSISESR---- 236 L +D+ RI PREI+ E S Y ++ ++ ++F D SI R Sbjct: 265 LQSLETDLARIQPREILVQEHMQSAINYIPALKSAAHLTFKPDSLFTDPKSIGRFRNLVL 324 Query: 237 -----IADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLF 291 +A++ + + F +S + AAA + Y+ + + P ++ + + Sbjct: 325 RSDLGLANH-DGSDEAVFKGYSPYQTQAAAGMLEYVAHNLPLAEHAFRLPISQNKKQMMK 383 Query: 292 IDSAARSNLEILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDS 350 +D +LEILR + G SL + ++Y+ T AG RL R++SPL D +IN D Sbjct: 384 LDKVTLKSLEILRNIRDGGIRGSLFQAVNYTKTNAGSRLLISRLSSPLVDIEEINHIHDV 443 Query: 351 INFFIQNPI-LINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFL 409 + F + P I+ I L++ D+ ++L RL +G G D I D +R+ I N+ L Sbjct: 444 VEAFTKQPSHWIHDITLPLETCCDIKKNLQRLSLGNGSLTDFRDIIDTLRNSATIRNI-L 502 Query: 410 KNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDG-------GFLRDGADASLD 462 +++P++ G V L L S+ S L D L DG G + G LD Sbjct: 503 TSEIPQKCNGTV--LFDLGNSISDF--SALYDKLEGVLNDGINGNITLGSISKGVSKHLD 558 Query: 463 ETRS----LRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKK--- 515 R L + +++ L Y E N +N G +E ++ K Sbjct: 559 TLRENRTELNQKRQQLFTKLVQVYGE-----NFSFIVDNRYGAALEFPKINSKKRPKLLN 613 Query: 516 --DLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQS 573 D++ +H Q +++ R DL N++ + L +E++ FE N I + Sbjct: 614 IIDMDPASTLMHEQRLASGVRIHNKHWTDLLNQMQELDDEMLKLEIDIFEKACNQIKQSI 673 Query: 574 ESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKP 633 L S++++ ID+S++ A+L+ E+ Y RP + + RHP+VE +Q Sbjct: 674 PELIELSRILSEIDVSLSFAVLSIEKEYVRPKMVTEPIHKITGSRHPVVEN-FQQLRGSM 732 Query: 634 FIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF-----------LRQNALIVIMAQMGSY 682 FI ND DLS ++W+LTGPNMGGK + +AL+ I+AQ G + Sbjct: 733 FIKNDIDLS-----EDQRMWILTGPNMGGKMRASILANMPLMFGMNLSALLSILAQAGGF 787 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA A +G+VD +++R+G++D+L++ STFMVEM ETA IL AT S VI+DE+GRGT Sbjct: 788 VPADSATLGVVDGIYTRIGASDDLSANESTFMVEMRETAYILANATPSSLVIMDEVGRGT 847 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK-----SLKRFHNATLQVSDSNE 797 + LDGLS+A+ IE+L N+ RGL ATH+HEL + + +H AT Q+ D + Sbjct: 848 SMLDGLSLAYGIIEHLANVNQSRGLFATHYHELATFTHMMNITGIGEYH-ATCQL-DKDN 905 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 G+I L+++ PGI + S+GI+V AGLP+ VI A ++ E Sbjct: 906 GLICLYRIEPGIMNQSHGIEVASHAGLPSEVIRIAKEMYTNLE 948 >gi|266623035|ref|ZP_06115970.1| DNA mismatch repair protein MutS [Clostridium hathewayi DSM 13479] gi|288865199|gb|EFC97497.1| DNA mismatch repair protein MutS [Clostridium hathewayi DSM 13479] Length = 621 Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 224/625 (35%), Positives = 352/625 (56%), Gaps = 31/625 (4%) Query: 290 LFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRL 348 + ID++ R NLE+L T+ +++ +LL +D + T G RL I PL I R Sbjct: 4 MIIDTSTRRNLELLETMREKQKRGTLLWVLDKTKTAMGARLLRTYIEQPLIHKDDIIARQ 63 Query: 349 DSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF 408 ++I N I I + L D+ R + R+ P+D+ ++ + I +L Sbjct: 64 NAIEELNMNYISREEICEYLNPIYDLERLIGRISYKTANPRDLISFKNSLEMLPYIKDLM 123 Query: 409 LKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLR 468 + P L+ E+L L + + +S + DD P RDGG +++G D+ R + Sbjct: 124 GEFTTPL-LKELWEELDPL-EDVHDLVSRAIVDDPPVSLRDGGIIKEGYHEETDKLRHAK 181 Query: 469 DQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQT 528 + K +A L+ + ++T IKNLK+K+N GY+ EVT+S ++ D F+ +QT Sbjct: 182 TEGKTWLAQLESRERDKTGIKNLKVKYNKVFGYYFEVTNSFKGMVP------DYFVRKQT 235 Query: 529 MSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDI 588 ++N R+TT EL +LE+ I A + +E F + + I + + ++ IA ID+ Sbjct: 236 LANAERYTTDELKELEDMILGAEDKLYTLEYGLFCEVRDTIAAEVLRIQQTARAIAGIDV 295 Query: 589 SIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKN 648 +L+ +A + NY +P I+ +K+GRHP+VEK ++ F+AND L D Sbjct: 296 MTSLSAVATKNNYVKPRINEKGVIDIKNGRHPVVEKMMRDDL---FVANDTYL----DNT 348 Query: 649 SGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLAS 708 +L ++TGPNM GKST++RQ ALIV+MAQ+GS+VPA A+IGI D++F+RVG++D+LAS Sbjct: 349 KNRLSIITGPNMAGKSTYMRQTALIVLMAQLGSFVPADEANIGICDRIFTRVGASDDLAS 408 Query: 709 GRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETN--RCRG 766 G+STFMVEM E A+IL AT S ++LDEIGRGT+T DGLSIAWA +E++ + Sbjct: 409 GQSTFMVEMTEVANILRNATKNSLIVLDEIGRGTSTFDGLSIAWAVVEHISNPKLLGAKT 468 Query: 767 LLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPN 826 L ATH+HELT+L ++ +N + V + + I+FL K++ G AD SYG+QV KLAG+P+ Sbjct: 469 LFATHYHELTELEGTINGVNNYCIAVKEQGDDIVFLRKIVKGGADKSYGVQVAKLAGVPD 528 Query: 827 TVISRAYDIL------------KTFEKLYHHNQKDMRLYYP-EIQTKESKNNLSKNDKLF 873 +VI RA ++L K + K + P E+ ++ + D Sbjct: 529 SVIVRAKELLVELSDADITARAKEIAEAGAGTPKHAAVPRPDEVDLQQMSLFDTVKDDDI 588 Query: 874 VEKIKCLNLDEMSPLTALKTLYAVK 898 V ++ L L M+P+ AL TLY ++ Sbjct: 589 VRELGELELGNMTPIDALNTLYRLQ 613 >gi|242799531|ref|XP_002483400.1| DNA mismatch repair protein Msh1, putative [Talaromyces stipitatus ATCC 10500] gi|218716745|gb|EED16166.1| DNA mismatch repair protein Msh1, putative [Talaromyces stipitatus ATCC 10500] Length = 1004 Score = 367 bits (942), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 263/897 (29%), Positives = 425/897 (47%), Gaps = 121/897 (13%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 + +V R+G FYEL+F+ A + L I L + + G +PM G P + +++ L++ Sbjct: 101 NCVVLTRVGGFYELYFEQAEELAPLLNIKLASKKTNAGP-VPMAGFPFFQLDRFLKILVQ 159 Query: 101 -IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARI 159 + +A+ E+ +P+E K + L R V R++TPGTL +++ + + +N+L+++ I Sbjct: 160 DLNRYVAVSEEFMNPVEEKSKSGGLLFDRKVTRVITPGTLIDEKFIDTSQNNFLLSLY-I 218 Query: 160 RTEW------------------------AIAWIDISTGIFKISTSNHDRLISDIMRIDPR 195 T++ +AW+D+STG F + L S I RI R Sbjct: 219 DTQYYEDQQQGGSSSPITHLLSSSSGRVGLAWMDLSTGDFYTQVTTTQMLPSAIARIGAR 278 Query: 196 EIIFSEK--ELSHAEYK-------SLFETLGNVAVAQPNVFFDHSISESRIADYYNITTV 246 EI+ ++ L E + L QP + H + S Sbjct: 279 EIVADQRLQNLMGQELQMLVGIDHQLLTLFHAPTTTQPMSEWAHMLEAS--------VRP 330 Query: 247 DTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL 306 + +F+ E A + Y++ + P R + ++ ID + LEIL T Sbjct: 331 EIASTFTNEEVAAGFNLLEYVRVQLQGVGMKLQPPRRRHLDESMGIDRNSLRGLEILETA 390 Query: 307 -SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQ 365 G + SLL + + T +G RL +R+ SP T + I RLD + +F+Q+ I Sbjct: 391 RDGLGKGSLLHAVRRTATKSGARLLRDRLTSPSTSLSVIQERLDLVTYFLQDEETRETIV 450 Query: 366 KILKSSPDVPRSLSRLKIGRGEPKDIAVIR------------------------DGIRSG 401 +LK S D R + + +GRG+P D+ + D R Sbjct: 451 SLLKRSYDSQRLVQKFTLGRGDPDDLICLSRAIEASREVYRVLSDRRNNSTCRIDATRQS 510 Query: 402 INILNLFLKNDLPEEL----------RGAVEK----------LKKLPQSLEKTLSSMLSD 441 + L L+ D P +L G ++K + L Q + LS L + Sbjct: 511 LEALIRRLRLDGPVQLAEKILAAIDEEGLLQKHRIEDSQAAEVAGLAQDI--VLSEALPE 568 Query: 442 DLPTFKR---------------------DGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 + + R D +R A +L D+ K +L Sbjct: 569 EAESMPRKIRFKTTGRPGIAVESDRGDIDTWIMRRNASDALRRLHERLDELKEEKQALTT 628 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 + E+ L +K LGY V A + ++ LE + + + F Sbjct: 629 RLQEQVGSSMLTLKWTPGLGYICHV--KGAKISQQALEDLGVTRNVSSTKSTRSFYLPAW 686 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 L R+ + E FE L +I + + V+ +D++ + +LAKEQN Sbjct: 687 SQLGARLDQSKVHIRAEEQRIFEDLRRDVILNLVKIRRNAAVMDELDVACSFTMLAKEQN 746 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 RPI++ +T+ + GRHP V+ L++Q + F++NDC + + ++WL+TGPNM Sbjct: 747 MVRPILNTTTSHHIVGGRHPTVKLGLEEQGRR-FVSNDCFIG-----DEERIWLITGPNM 800 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GGKSTFLRQNALI I+AQ+GS+VPA YA IGIVD++FSRVG+AD+L +STFMVEM+ET Sbjct: 801 GGKSTFLRQNALITILAQVGSFVPAEYAEIGIVDQIFSRVGAADDLFRDQSTFMVEMLET 860 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 A+IL QAT +SFVI+DE+GRGT DG ++ +A +E+L+ N+CR L ATHFH L D++ Sbjct: 861 AAILKQATPRSFVIMDEVGRGTTPEDGTAVGYACLEHLYNVNQCRTLFATHFHILVDMTA 920 Query: 781 SLKRFHNATLQVSDSNEG-IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 S ++ + ++ G F+HK+ G+ S+ ++V +LAGLP + I+ A +L Sbjct: 921 SFEKLGAYCTDIKENPSGSFSFVHKLRKGVNRQSHALKVARLAGLPESAITVAERVL 977 >gi|327354634|gb|EGE83491.1| DNA mismatch repair protein Msh1 [Ajellomyces dermatitidis ATCC 18188] Length = 906 Score = 366 bits (940), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 266/890 (29%), Positives = 438/890 (49%), Gaps = 109/890 (12%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 + ++ R+G+FYEL+F+ A + L + L ++ + G +PM G P + +++ L++ Sbjct: 6 NCVLLTRVGNFYELYFEQAEEYATLLNLKLAQKKTNAGA-VPMAGFPFFQLDRFLKILVQ 64 Query: 101 -IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARI 159 + +AI E+ + + K + R V R+VTPGTL +++ + P ++N+L++V Sbjct: 65 DLNKYVAISEEFANNVVGKAKSGGLQFDRKVSRIVTPGTLIDEKFMDPYENNFLLSVYMP 124 Query: 160 RTE--------------------WAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 T ++W+D+STG F + L S + RI REI+ Sbjct: 125 TTLPEETETSSPEQHSSMSGTQLIGLSWLDLSTGDFFTQQTKAQMLPSTLARIGAREIVI 184 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSI-SESR-IADYYNI----TTVDTFGSFS 253 + + K E V Q ++ S +E R +A++ +I ++ F+ Sbjct: 185 DQ----NVGPKIRQELQAIVGQDQQHLITSFSCPNEMRTLAEWGSIFESPIPLEVASMFT 240 Query: 254 QVEKTAAAAAISYIK-KTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSRE 311 E A + Y++ +TQ V K + P R + ++ ID + LEIL T G + Sbjct: 241 MEETAACNILLEYVQVQTQGV-KMKLQAPRRRHLDESMTIDRNSLRGLEILETARDGLGK 299 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 SLL + + T +G RL +R+ SP IN RLD ++ F+++ L I +LK S Sbjct: 300 GSLLHAVRRTATKSGARLLRDRLTSPSASLHVINERLDLVSKFLEDEDLRQNIILLLKRS 359 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLK---------NDLPEELRGAVE 422 D R + + +GRG+P D+ + I++ I ++ L+ +DL LR ++ Sbjct: 360 FDAQRLVQKFSLGRGDPDDLLCLSKAIQASQEIKSVLLRHINQYANKPSDLTSSLRSMLD 419 Query: 423 KLK-KLPQSL--------------------------------EKTLSSMLSDDL-----P 444 +L P++L E L+ S+DL P Sbjct: 420 RLNLDGPETLSQRILAAIDEEGLLQKQRIEDDAAADAAALAQEVILNEGSSEDLEAMPKP 479 Query: 445 TFKRDGG----------------FLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 + G +R GA +L + D + L E Sbjct: 480 VRTQRAGRQKDSNGTEQADRTTWIMRRGATKNLQKLHDALDLLLADKSELTKTLRETAGT 539 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTR-FTTLELIDLENRI 547 +NL +K LG+ + + AS + R + + S TR F L +RI Sbjct: 540 ENLSLKWTPGLGHIVHMKGVKASQQSVEALGATRTV---SSSKSTRSFYLSSWSQLGSRI 596 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 +A L E FE L A+I L + V+ +D++ + A LA+EQ RP+++ Sbjct: 597 DDAKFHILSEEQRIFEELREAVILNLVKLRRNAAVLDELDVACSFASLAEEQQMVRPVVN 656 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 NS + + GRHP V+ L++Q +PF++NDC + ++WL+TGPNMGGKSTFL Sbjct: 657 NSRSHKIVGGRHPTVKLGLEEQG-RPFVSNDCFIG-----EQERIWLITGPNMGGKSTFL 710 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQNALI I+AQ+GS+VPA +A IGIVD++FSR+G+AD+L +STFMVEM+E A+IL + Sbjct: 711 RQNALITILAQVGSFVPAEHAEIGIVDQIFSRIGAADDLFRDQSTFMVEMLEAATILKNS 770 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 T++SFVI+DE+GRGT DG ++ +A + +LH +CR L ATHFH L D++ + Sbjct: 771 TSRSFVIMDEVGRGTTPEDGTAVGFACLHHLHNVTQCRTLFATHFHVLADMTAQFEHLGR 830 Query: 788 ATLQVSDSNEG-IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 +++ G F+H++ G+ S+ ++V +LAGLP + I+ A D+L Sbjct: 831 YCTDINEDPSGSFSFVHRLRRGVNRESHALKVARLAGLPESAIAVAKDVL 880 >gi|146319777|ref|YP_001199489.1| DNA mismatch repair protein MutS [Streptococcus suis 05ZYH33] gi|145690583|gb|ABP91089.1| Mismatch repair ATPase (MutS family) [Streptococcus suis 05ZYH33] Length = 726 Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 232/694 (33%), Positives = 378/694 (54%), Gaps = 34/694 (4%) Query: 149 DSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSEKELSHA 207 DSNYL+A+ R ++A++++D+STG F + S + L +I + RE++ LS Sbjct: 4 DSNYLVAIDRQGVQFALSYMDVSTGQFFVTSLDDFTSLCGEIRNLRARELVIG-YALSEE 62 Query: 208 EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYI 267 E + +F N+ ++ F+ ++E ++ +D S + +EK AA +SY+ Sbjct: 63 E-EQVFSNQMNLLLS-----FEDEVTE-------DVQLIDN--SLTDLEKAAAGKLLSYL 107 Query: 268 KKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT-LSGSREQSLLKTIDYSITGAG 326 +TQM + + +I+ L +D A +S+L++L +G + SL +D + T G Sbjct: 108 HRTQMRDLSHLQKVVHYEIKDYLQMDYATKSSLDLLENGRTGKKHGSLYWLLDETKTAMG 167 Query: 327 GRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRG 386 RL I PL D +I R + F+ + + + LK D+ R SR+ G+ Sbjct: 168 MRLLRTWIDRPLIDLKRIENRQAVVQVFLDYFFERSDLVEALKGVYDIERLASRVSFGKT 227 Query: 387 EPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTF 446 PKD+ + + + I N+ + + P L V L +P+ L +SS + + Sbjct: 228 MPKDLLQLSQTLGNIPAIKNILQQINEPA-LGNLVAGLDPIPE-LHALISSAIDPEAQGT 285 Query: 447 KRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVT 506 DG +R G D +LD+ R + + IA ++ K E + I NLKI +N GY+ VT Sbjct: 286 ITDGNIIRTGFDETLDQYRLVMREGAGWIAEIEAKEREASGINNLKIDYNKKDGYYFHVT 345 Query: 507 SSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILS 566 +S+ + D F + T+ N R+ T EL +E ++ A + + +E E F + Sbjct: 346 NSNLGNVP------DHFFRKATLKNSERYGTEELAKIEGQMLEARDKSANLEYEIFMRIR 399 Query: 567 NAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTL 626 + + L ++ IA ID+ A A++A++Q+ P + + GRH +VEK + Sbjct: 400 QEVEKYIGRLQKLARTIATIDVLQAFAVVAEQQHLVCPRFTDQRELTIDRGRHAVVEKVM 459 Query: 627 KQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPAS 686 +Q+ +I N L+ + L+TGPNM GKST++RQ A+IVIMAQMGSYVPA Sbjct: 460 GKQT---YIPNSIHLNTDT-----HMQLITGPNMSGKSTYMRQLAVIVIMAQMGSYVPAD 511 Query: 687 YAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLD 746 A + I D +F+R+G+AD+L SG+STFMVEM+E + AT++S ++ DE+GRGTAT D Sbjct: 512 QAELPIFDAIFTRIGAADDLVSGQSTFMVEMMEANKAVRLATDRSLILFDELGRGTATYD 571 Query: 747 GLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVI 806 G+++A + IEY+H+ + L ATH+HELTDLS++L+ N + + + + FLHK+ Sbjct: 572 GMALAQSIIEYIHDKIGAKTLFATHYHELTDLSQTLEHLENVHVSTLEKDGQVTFLHKIA 631 Query: 807 PGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 G AD SYGI V K+AG+P ++ RA IL+T E Sbjct: 632 QGPADKSYGIHVAKIAGMPEELLQRADRILQTLE 665 >gi|145641963|ref|ZP_01797536.1| DNA mismatch repair protein [Haemophilus influenzae R3021] gi|145273329|gb|EDK13202.1| DNA mismatch repair protein [Haemophilus influenzae 22.4-21] Length = 672 Score = 364 bits (934), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 222/641 (34%), Positives = 348/641 (54%), Gaps = 18/641 (2%) Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 +AA + Y K+TQ P I Q + +D+A R NLE+ + LSG E +L Sbjct: 46 SAAGCLLQYAKETQRTALPHIQSISLIQNQDCIQLDAATRRNLELTQNLSGGTENTLASV 105 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D +T G RL I P+ D K+ R +I + N L++ +Q L+ D+ R Sbjct: 106 LDKCVTPMGSRLLKRWIHQPIRDVEKLKQRQQAIAEIL-NFDLVDELQPYLQLVGDMERI 164 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 L+R+ + P+D+ +R + I L ++ P L ++ + + L Sbjct: 165 LARVALRSARPRDLTRLRTALEQ-IPALRTIVQQKTPLFLTALFSQIADFSEQWD-LLQR 222 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 L + P RDGG + +G + LDE R L D + + + +L+ + E T I LKI N Sbjct: 223 ALIETPPLLIRDGGVIAEGYNTELDEWRMLSDGATQYLENLEKRERENTGIDTLKIGFNA 282 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 GY+I+++ A ++ ++ RQT+ N R+ EL + E+++ + +AL + Sbjct: 283 VHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKEYEDKVLKSKGAALAL 336 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + ++ L + ++ +L AS ++ +D+ + LA A NY P + + +++G Sbjct: 337 EKQLYDELFDLLLPHLGALQLASLALSELDVLVNLAERANTLNYVMPTFCDEVSVKIENG 396 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+VE+ LK PFIAN +L+ ++ L ++TGPNMGGKST++RQ ALI ++A Sbjct: 397 RHPVVEQVLK----DPFIANPVELN-----HNRHLLVITGPNMGGKSTYMRQTALITLLA 447 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GS+VPA A IG +D++F+R+G++D+LASGRSTFMVEM E A+IL+QAT QS V++DE Sbjct: 448 YIGSFVPADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATAQSLVLIDE 507 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 IGRGT+T DGLS+AWA E+L + R L ATH+ ELT L + L+ N L + N Sbjct: 508 IGRGTSTYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLESIANIHLDALEHNN 567 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 I F+H V G A SYG+ V LAG+P +VI A L EK ++ + E Sbjct: 568 TIAFMHAVQDGAASKSYGLAVAALAGVPQSVIKLAKQKLTQLEKNSSYSAEQQIQALREA 627 Query: 858 QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + + E I+ L+ D++SP AL LY +K Sbjct: 628 NHNQGELLFEQETDALREAIEKLDPDDLSPKQALAYLYQLK 668 >gi|291543951|emb|CBL17060.1| DNA mismatch repair protein MutS [Ruminococcus sp. 18P13] Length = 715 Score = 363 bits (932), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 220/592 (37%), Positives = 329/592 (55%), Gaps = 29/592 (4%) Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQ---STLFIDSAARSNLEILRTL-SGSREQS 313 A YI TQ K +G IQ + + +D AR NLE+ TL SG R S Sbjct: 88 ACACGLFDYIADTQ---KSLVGRFTDIRIQGQNAAMGLDLTARRNLELTETLRSGERRGS 144 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T G RL + PL +I RLD++ + + + +IL+ D Sbjct: 145 LLWVLDRTGTSMGKRLLKGWLEQPLISPARIMERLDAVEQLCKKSAVQMELSEILRQVYD 204 Query: 374 VPRSLSRLKIGRGEPKDI---AVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS 430 + R ++R+ P+D+ +V + + L L + L L + L+ + Sbjct: 205 LERLMTRVMYKTATPRDLKSLSVTALQLPALKAQLELVSDSKLLARLNNHISTLEAVSDL 264 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 +EK + ++ P +DGG ++DG LD+ RSL +IA ++ + E T IK Sbjct: 265 VEKAIV----EEPPITVKDGGVIKDGFHPDLDQLRSLMGGGSDLIAQIEQRERESTGIKG 320 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LKI N GY++EVT S ++ +I +QT++N RF T EL + EN I A Sbjct: 321 LKIGFNRVFGYYLEVTKSYYDLVPA------HYIRKQTLANCERFITEELKNAENTILGA 374 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 AL +E E F + + + Q + + +A +D+ + A +A+E NY +P I Sbjct: 375 KEKALRMEAELFAQVRDFLAGQLAQVQETAVSVAAVDVLCSFAKVAQENNYTKPEIAIDG 434 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 +KDGRHP+VE+ L+++ F+ ND L D+ ++ ++TGPNM GKST++RQ Sbjct: 435 VIDIKDGRHPVVEQVLQEEV---FVPNDVYL----DQKGSRMAIITGPNMSGKSTYMRQV 487 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI +MAQ+GS+VPA YA I +VD++F+RVG++D+LA+G+STFMVEM E ++IL AT Sbjct: 488 ALITLMAQIGSFVPARYAKISVVDQIFTRVGASDDLAAGQSTFMVEMSEVSAILKYATKH 547 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNA 788 S VILDE+GRGT+T DG+SIA A EY+ + C+ L ATH+HEL L S++ N Sbjct: 548 SLVILDEVGRGTSTFDGVSIARAVAEYIANSRLIGCKTLFATHYHELIALEHSVEGVRNL 607 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 ++ V + I FL K++PG D SYGI V KLAGLP V++RA ++LK E Sbjct: 608 SIAVKKHGDSIRFLRKIVPGGVDDSYGIDVAKLAGLPPRVVTRAKELLKELE 659 >gi|126654328|ref|ZP_01726094.1| DNA mismatch repair protein [Bacillus sp. B14905] gi|126589231|gb|EAZ83395.1| DNA mismatch repair protein [Bacillus sp. B14905] Length = 711 Score = 363 bits (932), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 221/610 (36%), Positives = 348/610 (57%), Gaps = 38/610 (6%) Query: 245 TVDTFGSFSQVEKTAAAAAIS------YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARS 298 TVD S+ VE +A IS YI KTQM + I +++ L IDS+++ Sbjct: 88 TVDKAASY--VEAVPSALQISCLRLLAYIDKTQMRSLSHIQAFTFNEMKHYLRIDSSSKR 145 Query: 299 NLEILRTLSGSREQ-SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQN 357 NLE+++++ G ++ +LL +D ++T GGR + + PL + I +RL + ++ Sbjct: 146 NLELIQSIRGGDQKGTLLWLLDDTVTAMGGRKLKQWLHQPLATRSAIESRLAIVTDLLEE 205 Query: 358 PILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEEL 417 + +Q LK D+ R R+ G +D+A +RD +R I ++L Sbjct: 206 YFVRTELQTALKQVYDLERLAGRVAFGNVGGRDLAQLRDSLRQVPAI---------QQQL 256 Query: 418 RGA-VEKLKKLPQSL------EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQ 470 GA E L++L +L E+ L++ ++D+ P ++G +RDG LDE R Sbjct: 257 LGAGKETLQQLGAALDTCTAVEELLANAITDNPPITIKEGDVIRDGYHERLDELRYAARN 316 Query: 471 SKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMS 530 K IA L+ + +T IKNLKI +N GY+IE+T S+ + DL R+ +QT++ Sbjct: 317 GKDWIAQLEQEERLKTGIKNLKIGYNRIFGYYIEITKSNIHL--ADL---TRYERKQTLA 371 Query: 531 NLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISI 590 N R+ T EL + E I NA +L +E F + +A+ E + + I+ +D+ + Sbjct: 372 NAERYITQELKEKEALILNAEEESLTLEYNLFVEIRDALKEFIPRVQALAASISELDVLL 431 Query: 591 ALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSG 650 + A ++++ + +P N + +GRHP+VEK L +Q ++ NDC L N+ Sbjct: 432 SFASISEKYRFTKPQFHNGRALEIIEGRHPVVEKMLNKQM---YVPNDCVLEEQNN---- 484 Query: 651 KLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGR 710 + L+TGPNM GKST++RQ ALIV+MAQMG YVPA A + I D++F+R+G+AD+LA+G+ Sbjct: 485 -MMLITGPNMSGKSTYMRQVALIVVMAQMGCYVPAEKAKLPITDQIFTRIGAADDLAAGQ 543 Query: 711 STFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLAT 770 STFMVEM+E+ + AT S ++ DEIGRGT+T DG+S+A + +EY+H+ L +T Sbjct: 544 STFMVEMLESQHAIMHATKNSLMLFDEIGRGTSTYDGMSLAQSMMEYIHDKIGANTLFST 603 Query: 771 HFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVIS 830 H+HELT L K L R N + ++ N ++FLHKV G AD SYGI V +LA LP +++ Sbjct: 604 HYHELTALEKDLPRLQNVHVAATEKNGMVVFLHKVKKGAADKSYGIHVAQLAQLPEEILA 663 Query: 831 RAYDILKTFE 840 RA +L+ FE Sbjct: 664 RARVLLENFE 673 >gi|261197998|ref|XP_002625401.1| DNA mismatch repair protein Msh1 [Ajellomyces dermatitidis SLH14081] gi|239595364|gb|EEQ77945.1| DNA mismatch repair protein Msh1 [Ajellomyces dermatitidis SLH14081] gi|239607786|gb|EEQ84773.1| DNA mismatch repair protein Msh1 [Ajellomyces dermatitidis ER-3] Length = 992 Score = 363 bits (932), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 266/894 (29%), Positives = 433/894 (48%), Gaps = 117/894 (13%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 + ++ R+G+FYEL+F+ A + L + L ++ + G +PM G P + +++ L++ Sbjct: 92 NCVLLTRVGNFYELYFEQAEEYATLLNLKLAQKKTNAGA-VPMAGFPFFQLDRFLKILVQ 150 Query: 101 -IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARI 159 + +AI E+ + + K + R V R+VTPGTL +++ + P ++N+L++V Sbjct: 151 DLNKYVAISEEFANNVVGKAKSGGLQFDRKVSRIVTPGTLIDEKFMDPYENNFLLSVYMP 210 Query: 160 RTE--------------------WAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 T ++W+D+STG F + L S + RI REI+ Sbjct: 211 TTLPEETETSSPEQHSSMSGTQLIGLSWLDLSTGDFFTQQTKAQMLPSALARIGAREIVI 270 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSI-SESR-IADYYNI----TTVDTFGSFS 253 + + K E V Q ++ S +E R +A++ +I ++ F+ Sbjct: 271 DQ----NVGPKIRQELQAIVGQDQQHLITSFSCPNEMRTLAEWGSIFESPIPLEVASMFT 326 Query: 254 QVEKTAAAAAISYIK-KTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSRE 311 E A + Y++ +TQ V K + P R + ++ ID + LEIL T G + Sbjct: 327 MEETAACNILLEYVQVQTQGV-KMKLQAPRRRHLDESMTIDRNSLRGLEILETARDGLGK 385 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 SLL + + T +G RL +R+ SP IN RLD ++ F+++ L I +LK S Sbjct: 386 GSLLHAVRRTATKSGARLLRDRLTSPSASLHVINERLDLVSKFLEDEDLRQNIILLLKRS 445 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGI----------------------------RSGIN 403 D R + + +GRG+P D+ + I RS ++ Sbjct: 446 FDAQRLVQKFSLGRGDPDDLLCLSKAIQASQEIKSVLLRHINQYANKPSDLTSSLRSMLD 505 Query: 404 ILNLFLKNDLPEEL-------------------------------------RGAVEKLKK 426 LNL D PE L G+ E L+ Sbjct: 506 RLNL----DGPETLSQRILAAIDEEGLLQKQRIEDDAAADAAALAQEVILNEGSSEDLEA 561 Query: 427 LPQSLEKTLSSMLSDDLPTFKRD--GGFLRDGADASLDETRSLRDQSKRIIASLQLKYAE 484 +P+ + + D T + D +R GA +L + D + L E Sbjct: 562 MPKPVRTQRAGRQKDSNGTEQADRTTWIMRRGATKNLQKLHDALDLLLADKSELTKTLRE 621 Query: 485 ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTR-FTTLELIDL 543 +NL +K LG+ + + AS + R + + S TR F L Sbjct: 622 TAGTENLSLKWTPGLGHIVHMKGVKASQQSVEALGATRTV---SSSKSTRSFYLSSWSQL 678 Query: 544 ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCR 603 +RI +A L E FE L A+I L + V+ +D++ + A LA+EQ R Sbjct: 679 GSRIDDAKFHILSEEQRIFEELREAVILNLVKLRRNAAVLDELDVACSFASLAEEQQMVR 738 Query: 604 PIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 P+++NS + + GRHP V+ L++Q +PF++NDC + ++WL+TGPNMGGK Sbjct: 739 PVVNNSRSHKIVGGRHPTVKLGLEEQG-RPFVSNDCFIG-----EQERIWLITGPNMGGK 792 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 STFLRQNALI I+AQ+GS+VPA +A IGIVD++FSR+G+AD+L +STFMVEM+E A+I Sbjct: 793 STFLRQNALITILAQVGSFVPAEHAEIGIVDQIFSRIGAADDLFRDQSTFMVEMLEAATI 852 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLK 783 L +T++SFVI+DE+GRGT DG ++ +A + +LH +CR L ATHFH L D++ + Sbjct: 853 LKNSTSRSFVIMDEVGRGTTPEDGTAVGFACLHHLHNVTQCRTLFATHFHVLADMTAQFE 912 Query: 784 RFHNATLQVSDSNEG-IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 +++ G F+H++ G+ S+ ++V +LAGLP + I+ A D+L Sbjct: 913 HLGRYCTDINEDPSGSFSFVHRLRRGVNRESHALKVARLAGLPESAIAVAKDVL 966 >gi|170084117|ref|XP_001873282.1| predicted protein [Laccaria bicolor S238N-H82] gi|164650834|gb|EDR15074.1| predicted protein [Laccaria bicolor S238N-H82] Length = 863 Score = 362 bits (930), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 270/885 (30%), Positives = 438/885 (49%), Gaps = 97/885 (10%) Query: 40 PDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLI 99 P L+ R+G FYE +FD A +R L I LT R K G +PMCG P+ + +++ L+ Sbjct: 6 PHCLLLTRVGQFYESYFDQAPEIARLLNIKLTSR-KWNGVQVPMCGFPLIHIDKHLKVLV 64 Query: 100 KIGHR-IAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVA- 157 + R +A+CE+ G K RR V R++TPGTL ++ L+P ++NYL+A++ Sbjct: 65 QEHKRFVAMCEEFPR----VTCGAKEFDRR-VSRIITPGTLIDEPFLNPFENNYLLAISV 119 Query: 158 --------RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS---H 206 +AW DISTG F + L ++ RI PRE+I + S H Sbjct: 120 PSNVDPISGFNHSLGLAWTDISTGEFYSRQCLLESLQDELARIAPREVILTNDFKSTPDH 179 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISY 266 K+L E ++ V F H+ R +Y + V F+ +A +Y Sbjct: 180 PVVKALVEEGSFISF----VAFPHTDDIPRRVEYDHPHDV----GFASHNLSAEELLGAY 231 Query: 267 IKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSITGA 325 ++ + + PT+ P E + + IDS LEI + G + +LL I + T Sbjct: 232 LRANLLEHMPTLPSPSHETALNRMQIDSHTIKALEIREGVYQGGSKGTLLGVIKRTTTSG 291 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 G RL A + SP T ++I +R + F ++P I++I+ + D+ R + + +GR Sbjct: 292 GARLLARWLCSPSTSISEIESRQAVVASFHRHPHFRADIKEIIGDAEDIGRIVQKFLLGR 351 Query: 386 GEPKDIAVIRDGIRSGINILNL-----FLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 G+ D+ + I I+ F+K+ E++ K L + + LS Sbjct: 352 GDCTDLLSVARTIDIWWAIIKRVNEEKFMKDTGTNEVKEDWRSFKTLVNQIVDL--NYLS 409 Query: 441 DDLPTFKRDGGFLRDGADASLDET---------------------------------RSL 467 + T F+R+G S++ R+L Sbjct: 410 TRIRTALSTDSFVREGPTESMEGITEVEPTEGTQSFGKYQGKWMINPDFSQKLASLHRAL 469 Query: 468 R---DQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 + Q R+ LQL+Y + +L ++ + LG + + S A KK L++ FI Sbjct: 470 QRFLQQKDRLERELQLQY----EAPSLTLRSSPALGMHVHL--SKAKRDKKQLDATPTFI 523 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 + E L I+ ++ +L E E+F+IL + + + +L ++++ Sbjct: 524 SISESGTTKSYFYKEWSHLGGLISETISALVLAEKEAFDILRHEVPYNAFALRRNAEILD 583 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 +D++++ A LA E N+ RP I + ++F V +GRHP VE L + + + N +++ Sbjct: 584 ELDVTLSFATLAAEMNFVRPRITDDSSFHVVNGRHPAVELGL-LSAGRVYTPNSVEMA-- 640 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 + L ++TGPNM GKSTFLRQ AL+ ++AQ+GS+VPA +A IGIVDKLFSR+G+ D Sbjct: 641 ---PTCNLHIITGPNMAGKSTFLRQTALVAVLAQVGSFVPADFATIGIVDKLFSRIGAKD 697 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 +L RSTFMVEM+ETA IL +AT +S VI+DE+GRGT DGL++A+AT+ +L N+C Sbjct: 698 DLFRDRSTFMVEMLETADILRRATPKSLVIMDEVGRGTTVKDGLALAFATVHHLTVKNQC 757 Query: 765 RGLLATHFHELTDL-----------SKSLKRFHNA-TLQVSDSNEGIIFLHKVIPGIADH 812 R L ATHFHEL+DL + S RF+ +++ D + + +++ PG+ Sbjct: 758 RCLFATHFHELSDLLGWSNGISNQCAFSKVRFYCTDVVEIEDGH--FTYAYRLQPGVNRE 815 Query: 813 SYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 S+G++V +LAGLP +S A L ++ + PEI Sbjct: 816 SHGLKVAQLAGLPPDALSVASQTLNWLKRKEYERTTISPFCVPEI 860 >gi|6321912|ref|NP_011988.1| Msh1p [Saccharomyces cerevisiae S288c] gi|730065|sp|P25846|MSH1_YEAST RecName: Full=DNA mismatch repair protein MSH1, mitochondrial; AltName: Full=MutS protein homolog 1; Flags: Precursor gi|529134|gb|AAB68849.1| Yhr120wp [Saccharomyces cerevisiae] gi|285810027|tpg|DAA06814.1| TPA: Msh1p [Saccharomyces cerevisiae S288c] Length = 959 Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 283/910 (31%), Positives = 443/910 (48%), Gaps = 123/910 (13%) Query: 23 KSSTPMMRQYI-EIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 K+S P QY+ ++ + D +V +MG FYEL+F+ A+ + L I+LT R GK + Sbjct: 76 KASLPPSLQYVRDLMDLYKDHVVLTQMGSFYELYFEQAIRYAPELNISLTNRAYSHGK-V 134 Query: 82 PMCGVPVHTANHYIQKLI-KIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 P G PVH + +++ L+ G+ + I EQ + A NK R V R+VTPGT Sbjct: 135 PFAGFPVHQLSRHLKMLVNNCGYSVTIAEQFKKKDVADNEANK--FYRRVTRIVTPGTFI 192 Query: 141 EDQLLSPTDSNYLM----------AVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIM 190 ++ + ++ YL+ VA + I W D+STG + L+S I Sbjct: 193 DEAFENLRENTYLLNIEFPENCMSQVADTSLKVGICWCDVSTGEIFVQQVYLRDLVSAIT 252 Query: 191 RIDPREIIFSEKELS-HAEYKSLFETLGNVAVAQPNVFFDHSISESR-IADYYNITTVD- 247 RI P+EI+ E+ L H E + + L V + + + + S+ R I +Y + + Sbjct: 253 RIQPKEILLDERLLEFHIESGTWYPEL--VELKKFFIKYQKMPSQHRTIESFYGLFNLGG 310 Query: 248 ----------TFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAAR 297 F +F+Q E A + Y+ P+R+ + + IDS Sbjct: 311 KEATERQLKIQFQTFTQKELAALRNTLIYVSNHLPDFSINFQIPQRQLATAIMQIDSRTS 370 Query: 298 SNLEILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQ 356 + LE+ T+ +++ SLL +I ++T +G RL ++ ++ P D +I R + FF Sbjct: 371 TALELHSTVRDNNKKGSLLSSIRRTVTPSGTRLLSQWLSGPSLDLKEIKKRQKIVAFFKD 430 Query: 357 NPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEE 416 N + ++ +LK D+ R L + GRGE ++ + + I L N Sbjct: 431 NRDITETLRTMLKKVNDLSRILQKFSFGRGEALELIQMARSLEVSREIRKYLLNNT---S 487 Query: 417 LRGAVEK--LKKLPQSLEKTLSSMLSDDLPTF------------KRDGGFLR-------D 455 L A K + +L +SL L DD+ F K++ R D Sbjct: 488 LMKATLKSQITQLTESL--NFEKNLIDDILKFLNEEELAKSQDAKQNADVTRMLDIDVKD 545 Query: 456 GADASLDETRSLRD---------QSKRIIASLQLKYAEETKI--------------KNLK 492 +++ DE LRD + +++ + Q + ++T+ K Sbjct: 546 KKESNKDEIFELRDFIVNPSFNTKLRKLHDTYQGVWQKKTEYNALLKGFFVGDLGAKTFT 605 Query: 493 IKHNNNLGYFIEVTSSSASVLK------KDLESKDRFIHRQTMSNLTRFTT--------- 537 +K N Y + VT +++S+ K K E H S+ TR+ + Sbjct: 606 LKERQNGEYALHVTGTASSLKKIDELISKSTEYHGSCFHILQKSSQTRWLSHKIWTDLGH 665 Query: 538 -LELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILA 596 LEL++L+ R A +I+L I++S + + + +D + A+LA Sbjct: 666 ELELLNLKIR----NEEANIIDL-----FKRKFIDRSNEVRQVATTLGYLDTLSSFAVLA 716 Query: 597 KEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLT 656 E+N P +D S V +GRH +VE+ L +S + F AN+C+L+ N LW++T Sbjct: 717 NERNLVCPKVDESNKLEVVNGRHLMVEEGLSARSLETFTANNCELAKDN------LWVIT 770 Query: 657 GPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVE 716 GPNMGGKSTFLRQNA+IVI+AQ+G +VP S A +GIVDKLFSRVGSAD+L + STFMVE Sbjct: 771 GPNMGGKSTFLRQNAIIVILAQIGCFVPCSKARVGIVDKLFSRVGSADDLYNEMSTFMVE 830 Query: 717 MIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHF-HEL 775 MIET+ IL AT +S ILDEIGRGT+ +G+SIA+AT++YL E N+CR L ATHF EL Sbjct: 831 MIETSFILQGATERSLAILDEIGRGTSGKEGISIAYATLKYLLENNQCRTLFATHFGQEL 890 Query: 776 TD---------LSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPN 826 +S+ +K + + + +N + HK+ PGI S I+V +LAG P Sbjct: 891 KQIIDNKCSKGMSEKVKFYQSGITDLGGNN--FCYNHKLKPGICTKSDAIRVAELAGFPM 948 Query: 827 TVISRAYDIL 836 + A +IL Sbjct: 949 EALKEAREIL 958 >gi|151944066|gb|EDN62359.1| MutS-like protein [Saccharomyces cerevisiae YJM789] Length = 959 Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 281/910 (30%), Positives = 444/910 (48%), Gaps = 123/910 (13%) Query: 23 KSSTPMMRQYI-EIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 K+S P QY+ ++ + D +V +MG FYEL+F+ A+ + L I+LT R GK + Sbjct: 76 KASLPPSLQYVRDLMDLYKDHVVLTQMGSFYELYFEQAIRYAPELNISLTNRAYSHGK-V 134 Query: 82 PMCGVPVHTANHYIQKLI-KIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 P G PVH + +++ L+ G+ + I EQ + A NK R V R+VTPGT Sbjct: 135 PFAGFPVHQLSRHLKMLVNNCGYSVTIAEQFKKKDVADNEANK--FYRRVTRIVTPGTFI 192 Query: 141 EDQLLSPTDSNYLM----------AVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIM 190 ++ + ++ YL+ VA + I W D+STG + L+S I Sbjct: 193 DEAFENLRENTYLLNIEFPENCMSQVADTSLKVGICWCDVSTGEIFVQQVYLRDLVSAIT 252 Query: 191 RIDPREIIFSEKELS-HAEYKSLFETLGNVAVAQPNVFFDHSISESR-IADYYNITTVD- 247 RI P+EI+ E+ L H E + + L V + + + + S+ R I +Y + + Sbjct: 253 RIQPKEILLDERLLEFHIESGTWYPEL--VELKKFFIKYQKMPSQHRTIESFYGLFNLGG 310 Query: 248 ----------TFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAAR 297 F +F+Q E A + Y+ P+R+ + + IDS Sbjct: 311 KEATERQLKIQFQTFTQKELAALRNTLIYVSNHLPDFSINFQIPQRQLATAIMQIDSRTS 370 Query: 298 SNLEILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQ 356 + LE+ T+ +++ SLL +I ++T +G RL ++ ++ P D +I R + FF Sbjct: 371 TALELHSTVRDNNKKGSLLSSIRRTVTPSGTRLLSQWLSGPSLDLKEIKKRQKIVAFFKD 430 Query: 357 NPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKND--LP 414 N + ++ +LK D+ R L + GRGE ++ + + I L N + Sbjct: 431 NRDITETLRTMLKKVNDLSRILQKFSFGRGEALELIQMARSLEVSREIRKYLLNNTSLMK 490 Query: 415 EELRGAVEKLKKLPQSLEKTLSSMLSDDLPTF------------KRDGGFLR-------D 455 L+ ++ +L +SL L DD+ F K++ R D Sbjct: 491 ATLKS---QITQLTESL--NFEKNLIDDILKFLNEEELAKSQDAKQNADVTRMLDIDVKD 545 Query: 456 GADASLDETRSLRD---------QSKRIIASLQLKYAEETKI--------------KNLK 492 +++ DE LRD + +++ + Q + ++T+ K Sbjct: 546 KKESNKDEIFELRDFIVNPSFNTKLRKLHDTYQGVWQKKTEYNALLKGFFVGDLGAKTFT 605 Query: 493 IKHNNNLGYFIEVTSSSASVLK------KDLESKDRFIHRQTMSNLTRFTT--------- 537 +K N Y + VT +++S+ K K E H S+ TR+ + Sbjct: 606 LKERQNGEYALHVTGTASSLKKIDELISKSTEYHGSCFHILQKSSQTRWLSHKIWTDLGH 665 Query: 538 -LELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILA 596 LEL++L+ R A +I+L I++S + + + +D + A+LA Sbjct: 666 ELELLNLKIR----NEEANIIDL-----FKRKFIDRSNEVRQVATTLGYLDTLSSFAVLA 716 Query: 597 KEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLT 656 E+N P +D S V +GRH +VE+ L +S + F AN+C+L+ N LW++T Sbjct: 717 NERNLVCPKVDESNKLEVVNGRHLMVEEGLSARSLETFTANNCELAKDN------LWVIT 770 Query: 657 GPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVE 716 GPNMGGKSTFLRQNA+IVI+AQ+G +VP S A +GIVDKLFSRVGSAD+L + STFMVE Sbjct: 771 GPNMGGKSTFLRQNAIIVILAQIGCFVPCSKARVGIVDKLFSRVGSADDLYNEMSTFMVE 830 Query: 717 MIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHF-HEL 775 MIET+ IL AT +S ILDEIGRGT+ +G+SIA+AT++YL E N+CR L ATHF EL Sbjct: 831 MIETSFILQGATERSLAILDEIGRGTSGKEGISIAYATLKYLLENNQCRTLFATHFGQEL 890 Query: 776 TD---------LSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPN 826 +S+ +K + + + +N + HK+ PGI S I+V +LAG P Sbjct: 891 KQIIDNKCSKGMSEKVKFYQSGITDLGGNN--FCYNHKLKPGICTKSDAIRVAELAGFPM 948 Query: 827 TVISRAYDIL 836 + A +IL Sbjct: 949 EALKEAREIL 958 >gi|256271661|gb|EEU06701.1| Msh1p [Saccharomyces cerevisiae JAY291] Length = 959 Score = 361 bits (926), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 284/909 (31%), Positives = 444/909 (48%), Gaps = 121/909 (13%) Query: 23 KSSTPMMRQYI-EIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 K+S P QY+ ++ + D +V +MG FYEL+F+ A+ + L I+LT R GK + Sbjct: 76 KASLPPSLQYVRDLMDLYKDHVVLTQMGSFYELYFEQAIRYAPELNISLTNRAYSHGK-V 134 Query: 82 PMCGVPVHTANHYIQKLI-KIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 P G PVH + +++ L+ G+ + I EQ + A NK R V R+VTPGT Sbjct: 135 PFAGFPVHQLSRHLKMLVNNCGYSVTIAEQFKKKDVADNEANK--FYRRVTRIVTPGTFI 192 Query: 141 EDQLLSPTDSNYLM----------AVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIM 190 ++ + ++ YL+ VA + I W D+STG + L+S I Sbjct: 193 DEAFENLRENTYLLNIEFPENCMSQVADTSLKVGICWCDVSTGEIFVQQVYLRDLVSAIT 252 Query: 191 RIDPREIIFSEKELS-HAEYKSLFETLGNVAVAQPNVFFDHSISESR-IADYYNITTVD- 247 RI P+EI+ E+ L H E + + L V + + + + S+ R I +Y + + Sbjct: 253 RIQPKEILLDERLLEFHIESGTWYPEL--VELKKFFIKYQKMPSQHRTIESFYGLFNLGG 310 Query: 248 ----------TFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAAR 297 F +F+Q E A + Y+ P+R+ + + IDS Sbjct: 311 KEATERQLKIQFQTFTQKELAALRNTLIYVSNHLPDFSINFQIPQRQLATAIMQIDSRTS 370 Query: 298 SNLEILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQ 356 + LE+ T+ +++ SLL +I ++T +G RL ++ ++ P D +I R + FF Sbjct: 371 TALELHSTVRDNNKKGSLLSSIRRTVTPSGTRLLSQWLSGPSLDLKEIKKRQKIVAFFKD 430 Query: 357 NPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEE 416 N + ++ +LK D+ R L + GRGE ++ + + I L N Sbjct: 431 NRDITETLRTMLKKVNDLSRILQKFSFGRGEALELIQMARSLEVSREIRKYLLNNT---S 487 Query: 417 LRGAVEK--LKKLPQSLEKTLSSMLSDDLPTF------------KRDGGFLR-------D 455 L A K + +L +SL L DD+ F K++ R D Sbjct: 488 LMKATLKSQITQLTESL--NFEKNLIDDILKFLNEEELAKSQDAKQNADVTRMLDIDVKD 545 Query: 456 GADASLDETRSLRD---------QSKRIIASLQLKYAEETKI--------------KNLK 492 +++ DE LRD + +++ + Q + ++T+ K Sbjct: 546 KKESNKDEIFELRDFIVNPSFNTKLRKLHDTYQGVWQKKTEYNALLKGFFVGDLGAKTFT 605 Query: 493 IKHNNNLGYFIEVTSSSASVLK------KDLESKDRFIHRQTMSNLTRFTT--------- 537 +K N Y + VT +++S+ K K E H S+ TR+ + Sbjct: 606 LKERQNGEYALHVTGTASSLKKIDELISKSTEYHGSCFHILQKSSQTRWLSHKIWTDLGH 665 Query: 538 -LELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILA 596 LEL++L+ R A +I+L I++S + + + +D + A+LA Sbjct: 666 ELELLNLKIR----NEEANIIDL-----FKRKFIDRSNEVRQVATTLGYLDTLSSFAVLA 716 Query: 597 KEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLT 656 E+N P +D S V +GRH +VE+ L +S + F AN+C+L+ N LW++T Sbjct: 717 NERNLVCPKVDESNKLEVVNGRHLMVEEGLSARSLETFTANNCELAKDN------LWVIT 770 Query: 657 GPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVE 716 GPNMGGKSTFLRQNA+IVI+AQ+G +VP S A +GIVDKLFSRVGSAD+L + STFMVE Sbjct: 771 GPNMGGKSTFLRQNAIIVILAQIGCFVPCSKARVGIVDKLFSRVGSADDLYNEMSTFMVE 830 Query: 717 MIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHF-HEL 775 MIET+ IL AT +S ILDEIGRGT+ +G+SIA+AT++YL E N+CR L ATHF EL Sbjct: 831 MIETSFILQGATERSLAILDEIGRGTSGKEGISIAYATLKYLLENNQCRTLFATHFGQEL 890 Query: 776 TDL-----SKSLK---RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNT 827 + SK ++ +F+ + + N + HK+ PGI S I+V +LAG P Sbjct: 891 KQIIDNKCSKGMREKVKFYQSGITDLGGN-NFCYNHKLKPGICTKSDAIRVAELAGFPME 949 Query: 828 VISRAYDIL 836 + A +IL Sbjct: 950 ALKEAREIL 958 >gi|172000|gb|AAA34801.1| homologue of bacterial MutS protein [Saccharomyces cerevisiae] Length = 959 Score = 361 bits (926), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 283/910 (31%), Positives = 443/910 (48%), Gaps = 123/910 (13%) Query: 23 KSSTPMMRQYI-EIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 K+S P QY+ ++ + D +V +MG FYEL+F+ A+ + L I+LT R GK + Sbjct: 76 KASLPPSLQYVRDLMDLYKDHVVLTQMGSFYELYFEQAIRYAPELNISLTNRAYSHGK-V 134 Query: 82 PMCGVPVHTANHYIQKLI-KIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 P G PVH + +++ L+ G+ + I EQ + A NK R V R+VTPGT Sbjct: 135 PFAGFPVHQLSRHLKMLVNNCGYSVTIAEQFKKKDVADNEANK--FYRRVTRIVTPGTFI 192 Query: 141 EDQLLSPTDSNYLM----------AVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIM 190 ++ + ++ YL+ VA + I W D+STG + L+S I Sbjct: 193 DEAFENLRENTYLLNIEFPENCMSQVADTSLKVGICWCDVSTGEIFVQQVYLRDLVSAIT 252 Query: 191 RIDPREIIFSEKELS-HAEYKSLFETLGNVAVAQPNVFFDHSISESR-IADYYNITTVD- 247 RI P+EI+ E+ L H E + + L V + + + + S+ R I +Y + + Sbjct: 253 RIQPKEILLDERLLEFHIESGTWYPEL--VELKKFFIKYQKMPSQHRTIESFYGLFNLGG 310 Query: 248 ----------TFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAAR 297 F +F+Q E A + Y+ P+R+ + + IDS Sbjct: 311 KEATERQLKIQFQTFTQKELAALRNTLIYVSNHLPDFSINFQIPQRQLATAIMQIDSRTS 370 Query: 298 SNLEILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQ 356 + LE+ T+ +++ SLL +I ++T +G RL ++ ++ P D +I R + FF Sbjct: 371 TALELHSTVRDNNKKGSLLSSIRRTVTPSGTRLLSQWLSGPSLDLKEIKKRQKIVAFFKD 430 Query: 357 NPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEE 416 N + ++ +LK D+ R L + GRGE ++ + + I L N Sbjct: 431 NRDITENLRTMLKKVNDLSRILQKFSFGRGEALELIQMARSLEVSREIRKYLLNNT---S 487 Query: 417 LRGAVEK--LKKLPQSLEKTLSSMLSDDLPTF------------KRDGGFLR-------D 455 L A K + +L +SL L DD+ F K++ R D Sbjct: 488 LMKATLKSQITQLTESL--NFEKNLIDDILKFLNEEELAKSQDAKQNADVTRMLDIDVKD 545 Query: 456 GADASLDETRSLRD---------QSKRIIASLQLKYAEETKI--------------KNLK 492 +++ DE LRD + +++ + Q + ++T+ K Sbjct: 546 KKESNKDEIFELRDFIVNPSFNTKLRKLHDTYQGVWQKKTEYNALLKGFFVGDLGAKTFT 605 Query: 493 IKHNNNLGYFIEVTSSSASVLK------KDLESKDRFIHRQTMSNLTRFTT--------- 537 +K N Y + VT +++S+ K K E H S+ TR+ + Sbjct: 606 LKERQNGEYALHVTGTASSLKKIDELISKSTEYHGSCFHILQKSSQTRWLSHKIWTDLGH 665 Query: 538 -LELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILA 596 LEL++L+ R A +I+L I++S + + + +D + A+LA Sbjct: 666 ELELLNLKIR----NEEANIIDL-----FKRKFIDRSNVVRQVATTLGYLDTLSSFAVLA 716 Query: 597 KEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLT 656 E+N P +D S V +GRH +VE+ L +S + F AN+C+L+ N LW++T Sbjct: 717 NERNLVCPKVDESNKLEVVNGRHLMVEEGLSARSLETFTANNCELAKDN------LWVIT 770 Query: 657 GPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVE 716 GPNMGGKSTFLRQNA+IVI+AQ+G +VP S A +GIVDKLFSRVGSAD+L + STFMVE Sbjct: 771 GPNMGGKSTFLRQNAIIVILAQIGCFVPCSKARVGIVDKLFSRVGSADDLYNEMSTFMVE 830 Query: 717 MIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHF-HEL 775 MIET+ IL AT +S ILDEIGRGT+ +G+SIA+AT++YL E N+CR L ATHF EL Sbjct: 831 MIETSFILQGATERSLAILDEIGRGTSGKEGISIAYATLKYLLENNQCRTLFATHFGQEL 890 Query: 776 TD---------LSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPN 826 +S+ +K + + + +N + HK+ PGI S I+V +LAG P Sbjct: 891 KQIIDNKCSKGMSEKVKFYQSGITDLGGNN--FCYNHKLKPGICTKSDAIRVAELAGFPM 948 Query: 827 TVISRAYDIL 836 + A +IL Sbjct: 949 EALKEAREIL 958 >gi|190405899|gb|EDV09166.1| hypothetical protein SCRG_04833 [Saccharomyces cerevisiae RM11-1a] Length = 959 Score = 361 bits (926), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 283/910 (31%), Positives = 443/910 (48%), Gaps = 123/910 (13%) Query: 23 KSSTPMMRQYI-EIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 K+S P QY+ ++ + D +V +MG FYEL+F+ A+ + L I+LT R GK + Sbjct: 76 KASLPPSLQYVRDLMDLYKDHVVLTQMGSFYELYFEQAIRYAPELNISLTNRAYSHGK-V 134 Query: 82 PMCGVPVHTANHYIQKLI-KIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 P G PVH + +++ L+ G+ + I EQ + A NK R V R+VTPGT Sbjct: 135 PFAGFPVHQLSRHLKMLVNNCGYSVTIAEQFKKKDVADNEANK--FYRRVTRIVTPGTFI 192 Query: 141 EDQLLSPTDSNYLM----------AVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIM 190 ++ + ++ YL+ VA + I W D+STG + L+S I Sbjct: 193 DEAFENLRENTYLLNIEFPENCMSQVADTSLKVGICWCDVSTGEIFVQQVYLRDLVSAIT 252 Query: 191 RIDPREIIFSEKELS-HAEYKSLFETLGNVAVAQPNVFFDHSISESR-IADYYNITTVD- 247 RI P+EI+ E+ L H E + + L V + + + + S+ R I +Y + + Sbjct: 253 RIQPKEILLDERLLEFHIESGTWYPEL--VELKKFFIKYQKMPSQHRTIESFYGLFNLGG 310 Query: 248 ----------TFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAAR 297 F +F+Q E A + Y+ P+R+ + + IDS Sbjct: 311 KEATERQLKIQFQTFTQKELAALRNTLIYVSNHLPDFSINFQIPQRQLATAIMQIDSRTS 370 Query: 298 SNLEILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQ 356 + LE+ T+ +++ SLL +I ++T +G RL ++ ++ P D +I R + FF Sbjct: 371 TALELHSTVRDNNKKGSLLSSIRRTVTPSGTRLLSQWLSGPSLDLKEIKKRQKIVAFFKD 430 Query: 357 NPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEE 416 N + ++ +LK D+ R L + GRGE ++ + + I L N Sbjct: 431 NRDITETLRTMLKKVNDLSRILQKFSFGRGEALELIQMARSLEVSREIRKYLLNNT---S 487 Query: 417 LRGAVEK--LKKLPQSLEKTLSSMLSDDLPTF------------KRDGGFLR-------D 455 L A K + +L +SL L DD+ F K++ R D Sbjct: 488 LMKATLKSQITQLTESL--NFEKNLIDDILKFLNEEELAKSQDAKQNADVTRMLDIDVKD 545 Query: 456 GADASLDETRSLRD---------QSKRIIASLQLKYAEETKI--------------KNLK 492 +++ DE LRD + +++ + Q + ++T+ K Sbjct: 546 KKESNKDEIFELRDFIVNPSFNTKLRKLHDTYQGVWQKKTEYNALLKGFFVGDLGAKTFT 605 Query: 493 IKHNNNLGYFIEVTSSSASVLK------KDLESKDRFIHRQTMSNLTRFTT--------- 537 +K N Y + VT +++S+ K K E H S+ TR+ + Sbjct: 606 LKERQNGEYALHVTGTASSLKKIDELISKSTEYHGSCFHILQKSSQTRWLSHKIWTDLGH 665 Query: 538 -LELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILA 596 LEL++L+ R A +I+L I++S + + + +D + A+LA Sbjct: 666 ELELLNLKIR----NEEANIIDL-----FKRKFIDRSNEVRQVAITLGYLDTLSSFAVLA 716 Query: 597 KEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLT 656 E+N P +D S V +GRH +VE+ L +S + F AN+C+L+ N LW++T Sbjct: 717 NERNLVCPKVDESNKLEVVNGRHLMVEEGLSARSLETFTANNCELAKDN------LWVIT 770 Query: 657 GPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVE 716 GPNMGGKSTFLRQNA+IVI+AQ+G +VP S A +GIVDKLFSRVGSAD+L + STFMVE Sbjct: 771 GPNMGGKSTFLRQNAIIVILAQIGCFVPCSKARVGIVDKLFSRVGSADDLYNEMSTFMVE 830 Query: 717 MIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHF-HEL 775 MIET+ IL AT +S ILDEIGRGT+ +G+SIA+AT++YL E N+CR L ATHF EL Sbjct: 831 MIETSFILQGATERSLAILDEIGRGTSGKEGISIAYATLKYLLENNQCRTLFATHFGQEL 890 Query: 776 TD---------LSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPN 826 +S+ +K + + + +N + HK+ PGI S I+V +LAG P Sbjct: 891 KQIIDNKCSKGMSEKVKFYQSGITDLGGNN--FCYNHKLKPGICTKSDAIRVAELAGFPM 948 Query: 827 TVISRAYDIL 836 + A +IL Sbjct: 949 EALKEAREIL 958 >gi|254031637|gb|ACT54508.1| DNA mismatch recognition protein [Acinetobacter sp. 511B] Length = 645 Score = 360 bits (925), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 234/672 (34%), Positives = 368/672 (54%), Gaps = 36/672 (5%) Query: 52 YELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQI 111 YELFFDDA A++ LGITLT RGK G IPM GVP H A Y+ +L+K G + ICEQ+ Sbjct: 1 YELFFDDAHKAAKLLGITLTHRGKTNGNPIPMAGVPFHAAEGYLARLVKKGETVVICEQL 60 Query: 112 ESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDIS 171 + K V R VVR++TPGTLT+D LL+ S+ L+A+ + + IA +D+S Sbjct: 61 ------GEVTGKGPVERGVVRILTPGTLTDDALLNSHQSSNLVALCLQQNQIGIALLDLS 114 Query: 172 TGIFKISTSNH--DRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFD 229 G+FK+ + ++L ++ R+ P EI+ E + + + + L +PNV F+ Sbjct: 115 AGLFKVQQQDFKLEQLSIELARLMPSEILVDEDIVDPNILEQVKKQLDCPITKRPNVDFN 174 Query: 230 HSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQS 288 + ++ ++D ++T+ FG + K AAAA I Y K+TQ P I + E Sbjct: 175 LNNAQKTLSDQLGVSTLSGFGIDHLPLAKAAAAALIHYAKETQKTALPHIRSIQLEQSSD 234 Query: 289 TLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRL 348 + +D R NLEI+ L SL + I+ T GGRL + + P+ D+ ++ RL Sbjct: 235 FIALDPVTRRNLEIVDPLF-EHGTSLFQLINDCQTAMGGRLLSRTLMQPMRDTALLDARL 293 Query: 349 DSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG------IRSGI 402 D+I + +PI+ +LK D+ R LSR+ +G P+D+ +R +R + Sbjct: 294 DAIQAILSG-YHDSPIRLVLKEIGDIERVLSRVALGSARPRDLVQLRHASAQLPFLRHAL 352 Query: 403 NILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLD 462 N + ++ L +L + L Q L L+S++ + P RDG + +G D+ LD Sbjct: 353 NPIVQNHQSKLVAQLNEELGDFHGLHQRL---LASIVENP-PVLLRDGNVIAEGFDSELD 408 Query: 463 ETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDR 522 E R +RD + + + L++K E T I LKI +N GY+IE+T + A ++ + Sbjct: 409 ELRKIRDHAGQFLIDLEIKGTESTGISTLKIGYNRVSGYYIELTRAQAE------QAPEH 462 Query: 523 FIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQV 582 +I RQT+ N R+ T EL E+++ ++ + AL E FE+L + + ++ +L S Sbjct: 463 YIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKMLFEMLLDELRQEIAALQMMSAA 522 Query: 583 IAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLS 642 IA ID+ A A+ +N+ RP T + GRHP+VE S F ND L Sbjct: 523 IAQIDLLSNFAHQARLRNWTRPEFSPETGIKIIAGRHPVVEAL----SKTAFTPNDTHLD 578 Query: 643 CPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGS 702 + ++ ++TGPNMGGKSTF+RQ ALI ++A GS+VPA A +G +D++F+R+GS Sbjct: 579 YAH-----RMAIITGPNMGGKSTFMRQTALISLLAYCGSFVPAQAAVLGPIDRIFTRIGS 633 Query: 703 ADNLASGRSTFM 714 AD+L++G+STFM Sbjct: 634 ADDLSTGKSTFM 645 >gi|259146873|emb|CAY80129.1| Msh1p [Saccharomyces cerevisiae EC1118] Length = 959 Score = 360 bits (925), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 281/910 (30%), Positives = 444/910 (48%), Gaps = 123/910 (13%) Query: 23 KSSTPMMRQYI-EIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 K+S P QY+ ++ + D +V +MG FYEL+F+ A+ + L I+LT R GK + Sbjct: 76 KASLPPSLQYVRDLMDLYKDHVVLTQMGSFYELYFEQAIRYAPELNISLTNRAYSHGK-V 134 Query: 82 PMCGVPVHTANHYIQKLIK-IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 P G PVH + +++ L+K G+ + I EQ + A NK R V R+VTPGT Sbjct: 135 PFAGFPVHQLSRHLKMLVKNCGYSVTIAEQFKKKDVADNEANK--FYRRVTRIVTPGTFI 192 Query: 141 EDQLLSPTDSNYLM----------AVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIM 190 ++ + ++ YL+ VA + I W D+STG + L+S I Sbjct: 193 DEAFENLRENTYLLNIEFPENCMSQVADTSLKVGICWCDVSTGEIFVQQVYLRDLVSAIT 252 Query: 191 RIDPREIIFSEKELS-HAEYKSLFETLGNVAVAQPNVFFDHSISESR-IADYYNITTVD- 247 RI P+EI+ E+ L H E + + L V + + + + S+ R I +Y + + Sbjct: 253 RIQPKEILLDERLLEFHIESGTWYPEL--VELKKFFIKYQKMPSQHRTIESFYGLFNLGG 310 Query: 248 ----------TFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAAR 297 +F+Q E A + Y+ P+R+ + + IDS Sbjct: 311 KEATERQLKIQLQTFTQKELAALRNTLIYVSNHLPDFSINFQIPQRQLATAIMQIDSRTS 370 Query: 298 SNLEILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQ 356 + LE+ T+ +++ SLL +I ++T +G RL ++ ++ P D +I R + FF Sbjct: 371 TALELHSTVRDNNKKGSLLSSIRRTVTPSGTRLLSQWLSGPSLDLKEIKKRQKIVAFFKD 430 Query: 357 NPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKND--LP 414 N + ++ +LK D+ R L + GRGE ++ + + I L N + Sbjct: 431 NRDITETLRTMLKKVNDLSRILQKFSFGRGEALELIQMARSLEVSREIRKYLLNNTSLMK 490 Query: 415 EELRGAVEKLKKLPQSLEKTLSSMLSDDLPTF------------KRDGGFLR-------D 455 L+ ++ +L +SL L DD+ F K++ R D Sbjct: 491 ATLKS---QITQLTESL--NFEKNLIDDILKFLNEEELAKSQDAKQNADVTRMLDIDVKD 545 Query: 456 GADASLDETRSLRD---------QSKRIIASLQLKYAEETKI--------------KNLK 492 +++ DE LRD + +++ + Q + ++T+ K Sbjct: 546 KKESNKDEIFELRDFIVNPSFNTKLRKLHDTYQGVWQKKTEYNALLKGFFVGDLGAKTFT 605 Query: 493 IKHNNNLGYFIEVTSSSASVLK------KDLESKDRFIHRQTMSNLTRFTT--------- 537 +K N Y + VT +++S+ K K E H S+ TR+ + Sbjct: 606 LKERQNGEYALHVTGTASSLKKIDELISKSTEYHGSCFHILQKSSQTRWLSHKIWTDLGH 665 Query: 538 -LELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILA 596 LEL++L+ R A +I+L I++S + + + +D + A+LA Sbjct: 666 ELELLNLKIR----NEEANIIDL-----FKRKFIDRSNEVRQVAITLGYLDTLSSFAVLA 716 Query: 597 KEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLT 656 E+N P +D S V +GRH +VE+ L +S + F AN+C+L+ N LW++T Sbjct: 717 NERNLVCPKVDESNKLEVVNGRHLMVEEGLSARSLETFTANNCELAKDN------LWVIT 770 Query: 657 GPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVE 716 GPNMGGKSTFLRQNA+IVI+AQ+G +VP S A +GIVDKLFSRVGSAD+L + STFMVE Sbjct: 771 GPNMGGKSTFLRQNAIIVILAQIGCFVPCSKARVGIVDKLFSRVGSADDLYNEMSTFMVE 830 Query: 717 MIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHF-HEL 775 MIET+ IL AT +S ILDEIGRGT+ +G+SIA+AT++YL E N+CR L ATHF EL Sbjct: 831 MIETSLILQGATERSLAILDEIGRGTSGKEGISIAYATLKYLLENNQCRTLFATHFGQEL 890 Query: 776 TD---------LSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPN 826 +S+ +K + + + +N + HK+ PGI S I+V +LAG P Sbjct: 891 KQIIDNKCSKGMSEKVKFYQSGITDLGGNN--FCYNHKLKPGICTKSDAIRVAELAGFPM 948 Query: 827 TVISRAYDIL 836 + A +IL Sbjct: 949 EALKEAREIL 958 >gi|254031655|gb|ACT54517.1| DNA mismatch recognition protein [Acinetobacter sp. A3-6] Length = 645 Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 233/670 (34%), Positives = 366/670 (54%), Gaps = 32/670 (4%) Query: 52 YELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQI 111 YELFFDDA A++ LGITLT RGK G+ IPM GVP H A Y+ +L+K G + ICEQI Sbjct: 1 YELFFDDAKKAAKLLGITLTHRGKANGEPIPMAGVPYHAAECYLARLVKKGEAVVICEQI 60 Query: 112 ESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDIS 171 + K V R VVR++TPGTLT+D LL+ T ++ L+A+ + + +A +D+S Sbjct: 61 ------GEVTGKGPVERGVVRIITPGTLTDDALLTATQASNLVAICFQQNQIGMALLDLS 114 Query: 172 TGIFKISTSNH--DRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFD 229 GIFK+ + + L ++ R+ P EI+ E + + + + +PNV F+ Sbjct: 115 AGIFKVQQQDFKSESLAIELARLMPSEILVDEDSVDPNIIEDIKRQIECPITKRPNVDFN 174 Query: 230 HSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQS 288 + ++ + D ++++T+ FG + K AAAA I Y K+TQ P I + E Sbjct: 175 LNNAQKTLCDQFSVSTLSGFGIDHLPLAKAAAAALIHYAKETQKTALPHIRSIKLEQSSD 234 Query: 289 TLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRL 348 + +D R NLEI+ L SL I+ T GGRL A + P+ D+ +++RL Sbjct: 235 FIALDPVTRRNLEIIDPLF-EHGTSLFSLINDCQTAMGGRLLARTLMQPIRDTQILDSRL 293 Query: 349 DSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF 408 D+ + ++ +P++ +LK D+ R LSR+ +G P+D+ +R + I L Sbjct: 294 DATDTLLKG-YHESPVRLVLKEIGDIERVLSRIALGSARPRDLVQLRQAC-AQIPFLRHA 351 Query: 409 LKNDLPEELRGAV----EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDET 464 ++ L ++ + E+L L + L S + + P RDG + +G DA LDE Sbjct: 352 IRPILEKQQSKLIIQLNEELGDF-NGLHQRLLSAIVEHPPVLLRDGNVIAEGFDAELDEL 410 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 R +RD + + + L+++ E T I +KI +N GY+IE+T + A ++ D +I Sbjct: 411 RKIRDHAGQFLIDLEIQERENTGINTVKIGYNRVSGYYIELTRAQAE------QAPDHYI 464 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 RQT+ N R+ T EL E+++ ++ + AL E FE+L + + +L S IA Sbjct: 465 RRQTLKNAERYITPELKSFEDKVLSSESRALAREKLLFEMLLDELGADIGNLQMMSASIA 524 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 ID+ A A+ N+ RP + GRHP+VE S PF ND L Sbjct: 525 HIDLLANFAYQARLNNWNRPEYSPEIGIKITAGRHPVVESL----SKTPFTPNDTLL--- 577 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 D N ++ ++TGPNMGGKSTF+RQ ALI ++A GS++PA A +G +D++F+R+GSAD Sbjct: 578 -DFNH-RMAIITGPNMGGKSTFMRQTALISLLAYCGSFIPAKMAKLGPIDRIFTRIGSAD 635 Query: 705 NLASGRSTFM 714 +L++G+STFM Sbjct: 636 DLSTGKSTFM 645 >gi|50312249|ref|XP_456156.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49645292|emb|CAG98864.1| KLLA0F24156p [Kluyveromyces lactis] Length = 940 Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 269/885 (30%), Positives = 436/885 (49%), Gaps = 82/885 (9%) Query: 23 KSSTPMMRQYI-EIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 ++S P QY+ ++ +V ++G FYEL+F+ A + + L ITLT + GK + Sbjct: 66 RNSLPPSLQYVRDVMDKYTGHVVLTQIGSFYELYFEHATIYAPILNITLTSKSIVSGK-V 124 Query: 82 PMCGVPVHTANHYIQKLIK-IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 P G P++ N +++ L+K G+ +A+C+Q + NK + R V R+VTPGT Sbjct: 125 PFAGFPLNQLNRHLKVLVKQYGYSVAVCDQFKHETLVDNDKNKFM--RRVTRIVTPGTFI 182 Query: 141 EDQLLSPTDSNYLMAV----------ARIRTEWAIAWIDISTGIFKISTSNHDRLISDIM 190 ++ + ++ YL+ V A + ++W DISTG + L+S I Sbjct: 183 DEAFENFQENQYLLTVHFSENCMKRAADLNIPVGLSWCDISTGEIFVQQVYLKDLVSSIT 242 Query: 191 RIDPREIIFSEK----ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNIT-- 244 RI P E++ E+ E+++ E+ L + + H +S + N Sbjct: 243 RIRPMEVLLDEEIMPVEITNGEWYKELTELKKYFIKYQKMPSKHRPIQSFFKLFSNAEGD 302 Query: 245 TVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILR 304 + G+F+Q E A + YI++ + P+++ I + IDS + LE+ Sbjct: 303 IGRSLGNFTQKEIAALRNLLLYIEEHLPDINTNLELPQKQLITDIMQIDSRTSTALELHS 362 Query: 305 TLSGSREQ-SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINP 363 T+ ++ SLL TI ++T +G RL + +++P D +I R + F N Sbjct: 363 TMRKHHKKGSLLSTIRRTVTTSGTRLLTQWLSAPSMDINEIKNRQSLVLLFKDNFDYTES 422 Query: 364 IQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEK 423 + + LK + D+ R + R GRG+P ++ I +R I + +L+ ++ + + Sbjct: 423 LIRYLKETADMSRIIQRFSFGRGDPLELIQIAKSLRKCKEI-SEYLQTNVHPSTKKTEKL 481 Query: 424 LKKLPQSL-------EKTLSSMLSDDL-----PTFKRDGG-----------------FLR 454 +K + + L EK +SS+ + L ++RD ++ Sbjct: 482 IKNITKQLNFEDPIVEKVISSLNEESLIKQWSEKYERDDEEKFDASEENQERKSLVMIMK 541 Query: 455 DGADASLDETRS----LRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSA 510 A L E L + + ++ + + E K+KN+ +K N+ + I ++ S A Sbjct: 542 PSASQKLKEYYKSYNILIKEKESLLQWYKDWFLERFKLKNVSLKQKNSGEFCIHLSGSIA 601 Query: 511 SVL--------KKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 +V+ +KD H S TR+ + + +R + + E E Sbjct: 602 NVVEFDKYIEQQKDSSQAHSGFHVLQKSRQTRWIIHDKWETLSREIEVVGALIKNEEERL 661 Query: 563 -EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 I S + + SQ + +D+ + A LA EQ P + T +K GRH + Sbjct: 662 INQFQKDFISLSPMIRSLSQTLDYMDVLTSFAKLAIEQRLVLPKVTQGTELNIKGGRHLV 721 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE ++ Q+S + F NDC + NSG+LW++TGPNMGGKSTFLRQNA+IVI+AQ+GS Sbjct: 722 VEASISQKSLESFTPNDCQI------NSGELWVITGPNMGGKSTFLRQNAIIVILAQIGS 775 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VP A IG+VDK+FSRVGSAD+L + STFMVEMIET+ IL ATN+S ILDEIGRG Sbjct: 776 FVPCESAVIGLVDKIFSRVGSADDLYNEMSTFMVEMIETSYILKGATNRSMAILDEIGRG 835 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL--QVSDSNEGI 799 T+ +G++IA+AT++YL N CR L ATHF T+L+ ++ N +S GI Sbjct: 836 TSRSEGVAIAYATLKYLTTNNACRALFATHFG--TELASTINSTSNEEFINNISFFKTGI 893 Query: 800 I-------FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILK 837 I + HK+ PGI S I+V KLAG P + A +L+ Sbjct: 894 IGDNSNFYYDHKLKPGICSKSDAIKVAKLAGFPEEALEIASTLLE 938 >gi|317036830|ref|XP_001398109.2| DNA mismatch repair protein Msh1 [Aspergillus niger CBS 513.88] Length = 1006 Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 263/900 (29%), Positives = 432/900 (48%), Gaps = 123/900 (13%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 + ++ R+G FYEL+F+ A + L + L + G +PM G P + +++ L++ Sbjct: 107 NCVILTRVGGFYELYFEQAEEFAPLLNLKLASKKTSAGP-VPMAGFPFFQLDRFLKILVQ 165 Query: 101 -IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARI 159 + +A+ E+ + E K R L R V R++TPGTL +++ + P+++N+L+AV Sbjct: 166 DLNKYVAVSEEFPNAAEDKLRSGGLLFDRKVARIITPGTLIDEKFMDPSENNFLLAVYID 225 Query: 160 RTEW------------------------AIAWIDISTGIFKISTSNHDRLISDIMRIDPR 195 ++ ++W+D+STG F + L S I RI R Sbjct: 226 KSSLKEQLMQQDASSSQQHVLLSASQNVGLSWLDLSTGDFFTQVTTAQMLPSAIARIGAR 285 Query: 196 EIIFSE-------KEL----SHAE-YKSLFETLGNVAVAQPNVFFDHSISESRIADYYNI 243 EI+ + +EL H + + F+ VA P ++ ++ E+ ++D Sbjct: 286 EILVDQGLQDVIGQELQLLIGHDQRLMTFFQFPKKVA---PMARWE-AMLEAPVSDAAAE 341 Query: 244 TTVDTFGSFSQVEKTAAAAAISYIK-KTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEI 302 T F++ E A + + YI+ + Q +N + P R + ++ ID + LEI Sbjct: 342 T-------FTREEVAAGYSLLEYIRVQLQGLNM-KLQPPRRRHLDESMSIDRNSLRGLEI 393 Query: 303 LRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILI 361 L T G + SLL + + T +G RL +R+ SP T + IN RLD ++ FI++ L Sbjct: 394 LETARDGFGKGSLLHAVRRTSTKSGARLLRDRLTSPSTSLSVINERLDLVSIFIEDRDLH 453 Query: 362 NPIQKILKSSPDVPRSLSRLKIGRGEPKDI------------------------------ 391 + + + LK S D R + + +GRG+P D+ Sbjct: 454 DNVIQFLKRSYDAQRLVQKFTLGRGDPDDLICLSRAIEASKEIRQVLSRKWHSEADSQTK 513 Query: 392 ---------------AVIRDGIRSGINILNLFLKNDLPEEL--------------RGAVE 422 V+ D I + I+ L K + ++ G E Sbjct: 514 RSIGIMVDRIHMDGPTVLADKILTAIDEEGLLQKQRIEDDTAAEAALLAQSVTLNEGIPE 573 Query: 423 KLKKLPQSLEKTLS--SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 + LP+ ++ S S S D T D +R A +L E +Q + L Sbjct: 574 DMAALPKKVKTKSSDRSSASTDEGTIA-DTWIMRRDASPALSELHQDLEQLHTAKSELTQ 632 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 + E L +K LG+ V A + ++ LE + + + F Sbjct: 633 RLRESVGSSALTLKWTPGLGHICHV--KGARITQESLEELGVTRNVSSTKSTRSFYLPAW 690 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 +L ++ E FE L +I + + V+ +D++ + A LA+EQ Sbjct: 691 TELGGQMDQVKTQIRQEEQVIFEHLRREVILNLVKIRRNAAVMDELDVACSFATLAQEQQ 750 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 RPI++ + + GRHP V+ L++Q + F++NDC L P ++WL+TGPNM Sbjct: 751 LVRPILNEDKSHKIVGGRHPTVKLGLEEQGRR-FVSNDCFLGGPE-----RIWLVTGPNM 804 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GKSTFLRQNALI I+AQ+GS+VPA+YA IG+VD++FSR+G+AD+L +STFMVEM+ET Sbjct: 805 AGKSTFLRQNALITILAQVGSFVPAAYAEIGLVDQIFSRIGAADDLFRDQSTFMVEMLET 864 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 A+IL QAT++SFVI+DE+GRGT DG ++++A + +LH N+CR L ATHFH L D++ Sbjct: 865 AAILKQATSRSFVIMDEVGRGTTPEDGTAVSFACLHHLHYHNKCRTLFATHFHVLADMTH 924 Query: 781 SLKRFHNATLQVSDSNEG-IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF 839 V +S G F+H++ G+ S+ ++V +LAGLP I A ++ + F Sbjct: 925 DFDALGRYCTDVKESASGSFSFIHRLRKGVNRESHALKVAQLAGLPREAIEMAKNVRQRF 984 >gi|326477070|gb|EGE01080.1| DNA mismatch repair protein Msh1 [Trichophyton equinum CBS 127.97] Length = 999 Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 280/926 (30%), Positives = 449/926 (48%), Gaps = 137/926 (14%) Query: 40 PDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLI 99 P+ ++ R+G+FYEL+F A + L + L + +G +PM G P + +++ L+ Sbjct: 90 PNCVLLTRVGNFYELYFHQAEEYASLLNLKLAYKKTAVGP-VPMAGFPYFQLDRFLKTLV 148 Query: 100 K-IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMA--- 155 + + +AI E+ + AK + + R V R+VTPGTL +++ + +NYL++ Sbjct: 149 QEMKKNVAISEEFANDAAAKAKAGGLMFDRKVARIVTPGTLIDEKFIDQYQNNYLLSIHV 208 Query: 156 --------------VARIRTEW-------AIAWIDISTGIFKISTSNHDRLISDIMRIDP 194 VAR + ++W+D+STG F ++ L S I RI Sbjct: 209 DPSLKSLQSSTDDQVARGQLNCLPDSDIIGLSWLDLSTGDFLTQVTSPQMLASAITRIGA 268 Query: 195 REIIFSEK--ELSHAEYKSL----------FETLGNV-AVAQPNVFFDHSISESRIADYY 241 REI+ + E +E ++L F++ N+ +++ N FD IS S +A Sbjct: 269 REILVDQSMGEPLRSELEALVVQEHQPITYFQSPKNIQPLSEWNPCFDSPIS-SEVASM- 326 Query: 242 NITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLE 301 F E +A + Y++K + P R+ + ++ ID LE Sbjct: 327 ----------FKPQEISACQMVLEYVRKQIKETDVRLQPPRRKVAEDSMSIDRNCLRGLE 376 Query: 302 ILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL 360 IL T G + SLL + + T +G RL ER+ +P IN RLD ++ +++ L Sbjct: 377 ILETARDGFGKGSLLHAVRRTSTSSGARLLRERLTAPSASLGVINERLDLVSLLLEDEDL 436 Query: 361 INPIQKILKSSPDVPRSLSRLKIGRGEPKDI---------------------------AV 393 I ++LK S D R + + +GRG P D+ AV Sbjct: 437 RENITRLLKRSYDTQRLVQKFSLGRGLPDDLICLSRAIDASGDIKSILEQKLTAVESRAV 496 Query: 394 IRDGIRSGINILNLFLKNDL--PEELRGAV-----EKLKKLPQSLEKT------------ 434 + S +I L + +L P EL ++ E++ Q +E+ Sbjct: 497 AEGDVSSSKSIRPLLHRFNLHGPGELSRSIQDSIDEEMLLQKQRVEEDAAAGASALAHDV 556 Query: 435 -LSSMLSDDLPTF-------KRDGGFLRDGADASLDETRSLRDQSKRIIA----SLQLKY 482 LS DL K DG G D+ D +R + +I+ +L+ Y Sbjct: 557 LLSEGTDSDLNAMPKKVKDSKGDGPKGPSGPDSPSDTAWIMRPDASKILRNLHDALESLY 616 Query: 483 AEETKI----------KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHR-QTMSN 531 +E+ ++ L +K LG+ + + + A +KK LE D + R + S Sbjct: 617 SEKARLTKRLQQTLDTAQLSLKWTPGLGHIVHMKGTKA--MKKSLE--DLGVTRIVSSSK 672 Query: 532 LTR-FTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISI 590 TR F L ++ + + E F+ L + +I L + V+ +D++ Sbjct: 673 STRSFYLPSWTQLGAKLESMKQQIRVEEQHIFKRLRHTVILNLVKLRRNASVLDELDVAC 732 Query: 591 ALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSG 650 + A LAKEQ RPI++N + + GRHP V+ +++Q +PF++NDC + DK Sbjct: 733 SFAALAKEQGMVRPIVNNGLSHKIIGGRHPTVKLGVEEQG-RPFVSNDCFV---GDKE-- 786 Query: 651 KLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGR 710 ++ L+TGPNM GKSTFLRQNALI I+AQ+GSYVPA YA IG+VDK+FSR+G+AD+L + Sbjct: 787 RILLITGPNMAGKSTFLRQNALITILAQVGSYVPAEYAEIGLVDKIFSRIGAADDLFRDQ 846 Query: 711 STFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLAT 770 STFMVEM+ETASIL AT +SFVI+DE+GRGT DG ++ +A + +LH N+ R L AT Sbjct: 847 STFMVEMLETASILKHATPRSFVIMDEVGRGTTPEDGTAVGFACLHHLHNENKARTLFAT 906 Query: 771 HFHELTDLSKSLKRFHNATLQV-SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVI 829 HFH L D++ + + D + G F+HK+ PG+ S+ ++V LAGLP +VI Sbjct: 907 HFHALADMTADFEYVGRYCTDLKEDPSGGFSFVHKLRPGVNRQSHALKVAHLAGLPQSVI 966 Query: 830 SRAYDILKTFE----KLYHHNQKDMR 851 A +++ +L H ++D R Sbjct: 967 DVAKVVIQKMPAMETELGHQVEEDCR 992 >gi|134083668|emb|CAK47060.1| unnamed protein product [Aspergillus niger] Length = 950 Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 263/900 (29%), Positives = 432/900 (48%), Gaps = 123/900 (13%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 + ++ R+G FYEL+F+ A + L + L + G +PM G P + +++ L++ Sbjct: 51 NCVILTRVGGFYELYFEQAEEFAPLLNLKLASKKTSAGP-VPMAGFPFFQLDRFLKILVQ 109 Query: 101 -IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARI 159 + +A+ E+ + E K R L R V R++TPGTL +++ + P+++N+L+AV Sbjct: 110 DLNKYVAVSEEFPNAAEDKLRSGGLLFDRKVARIITPGTLIDEKFMDPSENNFLLAVYID 169 Query: 160 RTEW------------------------AIAWIDISTGIFKISTSNHDRLISDIMRIDPR 195 ++ ++W+D+STG F + L S I RI R Sbjct: 170 KSSLKEQLMQQDASSSQQHVLLSASQNVGLSWLDLSTGDFFTQVTTAQMLPSAIARIGAR 229 Query: 196 EIIFSE-------KEL----SHAE-YKSLFETLGNVAVAQPNVFFDHSISESRIADYYNI 243 EI+ + +EL H + + F+ VA P ++ ++ E+ ++D Sbjct: 230 EILVDQGLQDVIGQELQLLIGHDQRLMTFFQFPKKVA---PMARWE-AMLEAPVSDAAAE 285 Query: 244 TTVDTFGSFSQVEKTAAAAAISYIK-KTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEI 302 T F++ E A + + YI+ + Q +N + P R + ++ ID + LEI Sbjct: 286 T-------FTREEVAAGYSLLEYIRVQLQGLNM-KLQPPRRRHLDESMSIDRNSLRGLEI 337 Query: 303 LRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILI 361 L T G + SLL + + T +G RL +R+ SP T + IN RLD ++ FI++ L Sbjct: 338 LETARDGFGKGSLLHAVRRTSTKSGARLLRDRLTSPSTSLSVINERLDLVSIFIEDRDLH 397 Query: 362 NPIQKILKSSPDVPRSLSRLKIGRGEPKDI------------------------------ 391 + + + LK S D R + + +GRG+P D+ Sbjct: 398 DNVIQFLKRSYDAQRLVQKFTLGRGDPDDLICLSRAIEASKEIRQVLSRKWHSEADSQTK 457 Query: 392 ---------------AVIRDGIRSGINILNLFLKNDLPEEL--------------RGAVE 422 V+ D I + I+ L K + ++ G E Sbjct: 458 RSIGIMVDRIHMDGPTVLADKILTAIDEEGLLQKQRIEDDTAAEAALLAQSVTLNEGIPE 517 Query: 423 KLKKLPQSLEKTLS--SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 + LP+ ++ S S S D T D +R A +L E +Q + L Sbjct: 518 DMAALPKKVKTKSSDRSSASTDEGTIA-DTWIMRRDASPALSELHQDLEQLHTAKSELTQ 576 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 + E L +K LG+ V A + ++ LE + + + F Sbjct: 577 RLRESVGSSALTLKWTPGLGHICHV--KGARITQESLEELGVTRNVSSTKSTRSFYLPAW 634 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 +L ++ E FE L +I + + V+ +D++ + A LA+EQ Sbjct: 635 TELGGQMDQVKTQIRQEEQVIFEHLRREVILNLVKIRRNAAVMDELDVACSFATLAQEQQ 694 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 RPI++ + + GRHP V+ L++Q + F++NDC L P ++WL+TGPNM Sbjct: 695 LVRPILNEDKSHKIVGGRHPTVKLGLEEQGRR-FVSNDCFLGGPE-----RIWLVTGPNM 748 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GKSTFLRQNALI I+AQ+GS+VPA+YA IG+VD++FSR+G+AD+L +STFMVEM+ET Sbjct: 749 AGKSTFLRQNALITILAQVGSFVPAAYAEIGLVDQIFSRIGAADDLFRDQSTFMVEMLET 808 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 A+IL QAT++SFVI+DE+GRGT DG ++++A + +LH N+CR L ATHFH L D++ Sbjct: 809 AAILKQATSRSFVIMDEVGRGTTPEDGTAVSFACLHHLHYHNKCRTLFATHFHVLADMTH 868 Query: 781 SLKRFHNATLQVSDSNEG-IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF 839 V +S G F+H++ G+ S+ ++V +LAGLP I A ++ + F Sbjct: 869 DFDALGRYCTDVKESASGSFSFIHRLRKGVNRESHALKVAQLAGLPREAIEMAKNVRQRF 928 >gi|258575667|ref|XP_002542015.1| hypothetical protein UREG_01531 [Uncinocarpus reesii 1704] gi|237902281|gb|EEP76682.1| hypothetical protein UREG_01531 [Uncinocarpus reesii 1704] Length = 865 Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 257/855 (30%), Positives = 414/855 (48%), Gaps = 116/855 (13%) Query: 83 MCGVPVHTANHYIQKLIK-IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 M G P + + +++ L++ + +AI E+ + L K R N + R V R+VTPGTL + Sbjct: 1 MAGFPFYQLDRFLKILVQDLQKYVAISEEFANNLAGKARSNGLMFNRKVARIVTPGTLID 60 Query: 142 DQLLSPTDSNYLMAV-----------------------ARIRTEWAIAWIDISTGIFKIS 178 ++ + + N+L+A+ + ++W+D+STG F Sbjct: 61 EKFMDHYEHNFLLALYINTGDQEAKSVDTTMLSSDELSSSSDQSVGLSWLDLSTGDFFTQ 120 Query: 179 TSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFD--HSISE-S 235 + L S ++RI +E++ E L H+ + + +G +F HSI S Sbjct: 121 HTTRSMLPSALVRIGAKEVMLDEG-LGHSLRREIQNLVGQ---GHRLTYFPRPHSIRPLS 176 Query: 236 RIADYY-NITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDS 294 +D + + ++D +FS E A + Y++ + P R+ ++ T+ ID Sbjct: 177 AWSDSFESPISLDLAATFSTEETAACHVLLEYVQTQMQGMDVKLQAPRRKHLEDTMIIDR 236 Query: 295 AARSNLEILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINF 353 + LEIL T G + SLL + + T +G RL +R+ SP + I+ RLD ++ Sbjct: 237 NSLKGLEILETARDGLGKGSLLHAVRRTSTKSGARLLRDRLTSPSASLSVIDQRLDLVSG 296 Query: 354 FIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF----- 408 F+++P L I +LK S D R + + +GRG+ D+ + I + I ++ Sbjct: 297 FVEDPDLQENITLLLKRSYDSQRLVQKFSLGRGDADDLLCLSRAIDASSRIKSVLSEQVG 356 Query: 409 ------------------------LKNDLPEEL--------------------------- 417 L D PEEL Sbjct: 357 DDRGEKAPDSISHRCETLRSMVCRLNMDGPEELSTRILQTIDEEALLRKQRIEEQDAADA 416 Query: 418 ----------RGAVEKLKKLPQSL--EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETR 465 G++E LP+ + +KT S S + T + + +R A +L + Sbjct: 417 AALAHEVIATEGSLEDFDSLPKRVRSQKTDRSRDSKESETDESNTWIMRRHASFTLQQLH 476 Query: 466 SLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIH 525 + + SL K + K NL +K LG+ + + S A D R + Sbjct: 477 KSLESLYQEKTSLTEKLRSDAKTTNLSLKWTPGLGHIVHIKGSKAMSQCLDALGVTRTV- 535 Query: 526 RQTMSNLTR-FTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 S TR F +L RI E F+ L A+I L S V+ Sbjct: 536 --ASSKSTRSFHLPSWTNLGARIDEMKLQIRSEEQLIFKSLRQAVIRNLVKLRRNSAVLD 593 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 +D++ + A LA+EQ RPI++ + + GRHP V+ L+++ +PFI NDC + Sbjct: 594 ELDVACSFAFLAREQGMVRPILNMGFSHKIVGGRHPTVKLGLEEKG-RPFINNDCFIG-- 650 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 ++WL+TGPNM GKSTFLRQNALI I+AQ+GS+VPA YA +GIVD++FSR+G+AD Sbjct: 651 ---GQERIWLITGPNMAGKSTFLRQNALITILAQVGSFVPAEYAELGIVDQIFSRIGAAD 707 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 +L +STFMVEM+ETA+IL A+ +SFVI+DE+GRGTA DG++I +A +++LH+ +RC Sbjct: 708 DLFRDQSTFMVEMLETAAILKHASQRSFVIMDEVGRGTAPEDGIAIGFACLQHLHDVSRC 767 Query: 765 RGLLATHFHELTDLSK---SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKL 821 R L ATHFH L D++ +L R+ T + +SN F+HK+ PG+ S+ ++V ++ Sbjct: 768 RTLFATHFHSLADMTSDFGNLGRY--CTGIIEESNGSFSFIHKLEPGVNRKSHALKVARI 825 Query: 822 AGLPNTVISRAYDIL 836 AG+P +VI A +L Sbjct: 826 AGVPQSVIEVARTVL 840 >gi|254031633|gb|ACT54506.1| DNA mismatch recognition protein [Acinetobacter sp. 423D] Length = 645 Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 234/672 (34%), Positives = 358/672 (53%), Gaps = 36/672 (5%) Query: 52 YELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQI 111 YELFF+DA A++ LGITLT RGK G+ IPM GVP H A Y+ +L+K G + ICEQI Sbjct: 1 YELFFEDAHKAAKLLGITLTHRGKANGEPIPMAGVPYHAAEGYLARLVKKGETVVICEQI 60 Query: 112 ESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDIS 171 + K+ V R VVR++TPGTLT+D LL+ S+ L+A+ + E IA +D+S Sbjct: 61 ------GEVTGKAPVERGVVRIITPGTLTDDALLTAHQSSNLVALCVQQNEIGIALLDLS 114 Query: 172 TGIFKISTSNHDRLISDI--MRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFD 229 G+FK+ I R+ P EI+ E + + + + L +PNV F+ Sbjct: 115 AGLFKVQQQEFQLEQLGIELSRLMPSEILVDENIVDPNIIEHIKKLLDCPVTRRPNVDFN 174 Query: 230 HSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQS 288 + ++ + D + ++T+ FG + K AAA+ I Y K+TQ P I + E Sbjct: 175 LNNAQKTLCDQFAVSTLAGFGIDHLPLAKAAAASLIHYAKETQKTALPHIRSIQLEQSSD 234 Query: 289 TLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRL 348 + +D R NLE++ L SL + I+ T GGRL + + PL D+ ++ RL Sbjct: 235 FIALDPVTRRNLELVEPLF-EHGTSLFQLINDCQTAMGGRLLSRTLMQPLRDTKLLDARL 293 Query: 349 DSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG------IRSGI 402 D+ + +P++ +LK D+ R LSR+ +G P+D+ +R +R I Sbjct: 294 DATKSLVDG-YHESPVRLVLKEIGDIERVLSRVALGSARPRDLVQLRQACAQIPYLRHAI 352 Query: 403 NILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLD 462 + ++ L +L E+L L + L S + + P RDG + +G D LD Sbjct: 353 QPVIQSKQSALITQLN---EELGDF-HGLHQRLMSAIVEHPPVLLRDGNVIAEGFDHELD 408 Query: 463 ETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDR 522 E R +RD + + + L+++ + T I LKI +N GY+IE+T + A ++ D Sbjct: 409 ELRKIRDHAGQYLIDLEIQERQNTGISTLKIGYNRVSGYYIELTRAQAG------QAPDH 462 Query: 523 FIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQV 582 +I RQT+ N R+ T EL E+++ ++ + AL E FEIL + + L S Sbjct: 463 YIRRQTLKNAERYITPELKTFEDKVLSSESRALAREKMLFEILLDELRADIGHLQMMSSA 522 Query: 583 IAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLS 642 IA ID+ A A+ +N+ RP + GRHP+VE K F ND L Sbjct: 523 IAQIDLLANFAHQARLRNWSRPEYSPEIGVKIIAGRHPVVEALNKAT----FTPNDTTL- 577 Query: 643 CPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGS 702 D N ++ ++TGPNMGGKSTF+RQ ALI ++A GSYVPA A +G +D++F+R+GS Sbjct: 578 ---DFNH-RMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPAQSAVLGPIDRIFTRIGS 633 Query: 703 ADNLASGRSTFM 714 AD+L++G+STFM Sbjct: 634 ADDLSTGKSTFM 645 >gi|227824422|ref|ZP_03989254.1| DNA mismatch repair protein mutS [Acidaminococcus sp. D21] gi|226904921|gb|EEH90839.1| DNA mismatch repair protein mutS [Acidaminococcus sp. D21] Length = 570 Score = 357 bits (916), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 208/575 (36%), Positives = 327/575 (56%), Gaps = 25/575 (4%) Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 G RL + I SPL D+ +I +R ++ + + L + + LK D+ R LSR+++G Sbjct: 2 GARLMRQWIESPLYDAARITSRQQAVGTLVGDSRLRTELGEALKKITDLERILSRIEVGS 61 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM---LSDD 442 +D+A +R + + + LK L G + KL S E L + + DD Sbjct: 62 ANARDMASLRTALLAVPD-----LKRLLAPYRDGLLAKLSSRIDSHETVLDELRRGIVDD 116 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502 P R+GG +R G +A LDE + + + + +L+ EET IKNLK+ N GY+ Sbjct: 117 PPFTVREGGMIRKGYNAELDELHDIAENNNAWMQDFELRIKEETGIKNLKVGFNKVFGYY 176 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 IEV+ S + D FI +QT+ N R+ EL EN+I +A +E F Sbjct: 177 IEVSKGQVS------QVPDSFIRKQTLVNGERYIVPELKAFENKILSAKEKIQQLEYYLF 230 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 + + + ++ ++ + ++ I +D +LA+ A + NY P + + I+KDGRHP+V Sbjct: 231 NEIRDCVRDELVTIQDTARAIGELDAIYSLAMAAFKGNYVCPRLSDKGEIIIKDGRHPVV 290 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 EK L+++ F+ ND L+ N++ L +LTGPNM GKST++RQ AL+V+M QMGS+ Sbjct: 291 EKLLEREL---FVPNDVHLNGTNER----LIILTGPNMAGKSTYMRQVALLVLMTQMGSF 343 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 +P A I VD++F+RVG++D+LA+G+STFMVEM E A+IL AT++S +ILDE+GRGT Sbjct: 344 LPCREAVITPVDRIFTRVGASDDLATGQSTFMVEMNEVANILKNATSRSLIILDEVGRGT 403 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFL 802 +T DG+SIA A +EY++E + + L ATH+HEL +L N ++ V + ++FL Sbjct: 404 STYDGMSIARAVVEYINEKIKAKTLFATHYHELIELEDLFDGIKNYSIAVKEKGNDVVFL 463 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF--EKLYHHNQKDMRLYYPEIQTK 860 +++PG D SYGI V KLAGLP V+ RA ++L+ + E H E T Sbjct: 464 RRIVPGGTDRSYGIHVAKLAGLPKKVLDRADELLEEYAAEAPLSHKGTHHVEISKEAATD 523 Query: 861 ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 E++ +L + + + L++ M+PL A+ TLY Sbjct: 524 ETQGSLFGDT--IRDTLMGLDVMTMTPLEAMNTLY 556 >gi|327305179|ref|XP_003237281.1| DNA mismatch repair protein Msh1 [Trichophyton rubrum CBS 118892] gi|326460279|gb|EGD85732.1| DNA mismatch repair protein Msh1 [Trichophyton rubrum CBS 118892] Length = 999 Score = 357 bits (916), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 278/919 (30%), Positives = 451/919 (49%), Gaps = 125/919 (13%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 + ++ R+G+FYEL+F A + L + L + +G +PM G P + +++ L++ Sbjct: 91 NCVLLTRVGNFYELYFHQAEEYASLLNLKLAYKKTAVGP-VPMAGFPYFQLDRFLKTLVQ 149 Query: 101 -IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVA-- 157 + +AI E+ + AK + + R V R+VTPGTL +++ + +NYL+++ Sbjct: 150 EMKKNVAISEEFANDAAAKAKAGGLMFDRKVARIVTPGTLIDEKFIDQYQNNYLLSIHVD 209 Query: 158 ------RIRTE----------------WAIAWIDISTGIFKISTSNHDRLISDIMRIDPR 195 + T+ ++W+D+STG F ++ L S I RI R Sbjct: 210 PSLKSLQFGTDDQVTPGEVNRLPDSDIIGLSWLDLSTGDFLTQVTSPQMLASAITRIGAR 269 Query: 196 EIIFSEKELSHAE-YKSLFETLGNVAVAQPNVFFD-----HSISESRIADYYNITTVDTF 249 EI+ + S E +S E L V QP + + +SE + + + + + Sbjct: 270 EILVDQ---SMGEPLRSQLEAL-VVQEHQPITYIERPNNIQPLSEWN-SSFDSPISSEVA 324 Query: 250 GSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SG 308 F+ E +A + Y++K + P R + ++ ID LEIL T G Sbjct: 325 AMFTPQEISACQMVLEYVRKQIKETDVRLQPPRRRLAEDSMSIDRNCLRGLEILETARDG 384 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKIL 368 + SLL + + T +G RL ER+ +P IN RLD ++ +++ L I ++L Sbjct: 385 FGKGSLLHAVRRTSTSSGARLLRERLTAPSASLEVINERLDLVSLLLEDEDLRENIMRLL 444 Query: 369 KSSPDVPRSLSRLKIGRGEPKDI---------------------------AVIRD----- 396 K S D R + + +GRG P D+ A D Sbjct: 445 KRSYDTQRLVQKFSLGRGLPDDLICLSRAIDASGDIKSILEQKLTAVESKAAAEDDISNS 504 Query: 397 -GIRSGINILNLFLKNDLPEELRGAV-EKLKKLPQSLEKTLSS---------MLSD---- 441 IR ++ LNL +L ++ ++ E++ Q +E+ ++ +LS+ Sbjct: 505 KSIRPLLHRLNLHGPGELSRSIQDSIDEEMLLQKQRVEEDAAAGDSALAHDVLLSEGSDA 564 Query: 442 DLPTF-------KRDGGFLRDGADASLDETRSLRDQSKRIIA----SLQLKYAEETKI-- 488 DL K DG G D+ D +R + +I+ +L+ Y+E+ K+ Sbjct: 565 DLNAMPKKVKDSKVDGPKGPSGPDSPSDTAWIMRPDASKILRNLHDALENLYSEKAKLTK 624 Query: 489 --------KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQ-TMSNLTR-FTTL 538 L +K LG+ + + + A +KK LE D + R + S TR F Sbjct: 625 RLQQTLDTAQLSLKWTPGLGHIVHMKGTKA--MKKSLE--DLGVTRTVSSSKSTRSFYIP 680 Query: 539 ELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKE 598 L ++ + E F+ L + +I L + V+ +D++ + A LAKE Sbjct: 681 SWTQLGAKLESMKQQIRAEEQHIFKRLRHTVILNLVKLRRNASVLDELDVACSFAALAKE 740 Query: 599 QNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGP 658 Q RPI++N + + GRHP V+ +++Q +PF++NDC + ++ L+TGP Sbjct: 741 QGMVRPIVNNGLSHKIIGGRHPTVKLGVEEQG-RPFVSNDCFVG-----GKERILLITGP 794 Query: 659 NMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMI 718 NM GKSTFLRQNALI I+AQ+GSYVPA YA IG+VDK+FSR+G+AD+L +STFMVEM+ Sbjct: 795 NMAGKSTFLRQNALITILAQVGSYVPAEYAEIGLVDKIFSRIGAADDLFRDQSTFMVEML 854 Query: 719 ETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDL 778 ETASIL AT +SFVI+DE+GRGT DG ++ +A + +LH N+ R L ATHFH L D+ Sbjct: 855 ETASILKHATPRSFVIMDEVGRGTTPEDGTAVGFACLHHLHNENKARTLFATHFHALADM 914 Query: 779 SKSLKRF--HNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 + + + L+V DS+ G F+HK+ PGI S+ ++V LAGLP +VI A D++ Sbjct: 915 TADFEHVGRYCTDLKV-DSSGGFSFVHKLRPGINRQSHALKVAHLAGLPQSVIDVAKDVI 973 Query: 837 KTFE----KLYHHNQKDMR 851 + +L H ++D R Sbjct: 974 QKMPAMETELGHQVEEDCR 992 >gi|75760974|ref|ZP_00740980.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491538|gb|EAO54748.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 803 Score = 355 bits (910), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 227/732 (31%), Positives = 398/732 (54%), Gaps = 52/732 (7%) Query: 123 KSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--T 179 K +VRR VV+L+TPGT+ E + + ++N+L A+ +A+A D++TG ++ T Sbjct: 8 KGVVRREVVQLITPGTMMEGRTIDEKENNFLAALTHFEDGSYALACNDLTTGQNTVTLLT 67 Query: 180 SNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNV-----AVAQPNVFFDHSISE 234 + + ++ ++ +EI+ + S E L ETL A A P +H + Sbjct: 68 GSVEDILLEVYATGSKEIVV-DSSFSKDELNKLTETLKMTISYEDATAIPE-GLEHLVK- 124 Query: 235 SRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQST---LF 291 N++ + ++ +Y+ +TQ K ++ + + +I T + Sbjct: 125 -------NVSQAKLIKAIGRL--------FNYVIRTQ---KRSLDHLQPVEIYYTNQFMK 166 Query: 292 IDSAARSNLEILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDS 350 ID ++ NLE+ TL + + SLL +D + T GGR+ + + PL K+ RL+ Sbjct: 167 IDVHSKRNLELTETLRTKEKTGSLLWLLDKTKTAMGGRMLKQWMERPLIQKEKVEERLEM 226 Query: 351 INFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--F 408 + F+ + L +++ LK D+ R ++ G +D+ +R + IL Sbjct: 227 VETFVNDYFLREDLKEKLKEVYDLERLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISL 286 Query: 409 LKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLR 468 L N L + + +SL + L + ++ P +DG ++DG + LD+ R + Sbjct: 287 LDNAYAARLIQSADPC----ESLTELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVS 342 Query: 469 DQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQT 528 K IA L+ + + T +K+LKI +N GY+IEVT ++ + L + R+ +QT Sbjct: 343 KNGKTWIAELEKRERDITGVKSLKIGYNRIFGYYIEVTKANLAAL-----PEGRYERKQT 397 Query: 529 MSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDI 588 ++N RF T EL + E I A + +E + F L + L + ++VI+ +D+ Sbjct: 398 LANAERFITDELKEKETLILEAEEKIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDV 457 Query: 589 SIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKN 648 + A +++E+ + +P++ +KDGRHP+VEK L + K ++ NDC + D Sbjct: 458 LQSFATVSEEEQFVKPVLTTKREIFIKDGRHPVVEKVL---NGKLYVPNDCIMPEKMD-- 512 Query: 649 SGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLAS 708 ++L+TGPNM GKST++RQ AL+ +M+Q+G +VPA+ A + + D++F+R+G+AD+L S Sbjct: 513 ---VFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLIS 569 Query: 709 GRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLL 768 G+STFMVEM+E + + A+ +S ++ DEIGRGT+T DG+++A A IE++H+ + L Sbjct: 570 GQSTFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLF 629 Query: 769 ATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTV 828 +TH+HELT L +SL + N + + N ++FLHK+ G AD SYGI V +LA LP+++ Sbjct: 630 STHYHELTVLEESLDQLKNVHVSAIEENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSL 689 Query: 829 ISRAYDILKTFE 840 I+RA ++L E Sbjct: 690 IARAKEVLAQLE 701 >gi|126641297|ref|YP_001084281.1| mismatch repair protein [Acinetobacter baumannii ATCC 17978] gi|126387181|gb|ABO11679.1| mismatch repair protein [Acinetobacter baumannii ATCC 17978] Length = 573 Score = 354 bits (908), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 219/591 (37%), Positives = 322/591 (54%), Gaps = 40/591 (6%) Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 GGRL + + P+ D+ ++ RLD+I IQ +P++ +LK D+ R LSR+ +G Sbjct: 2 GGRLLSRTLMQPVRDTALLDARLDAIEQLIQG-YHESPVRMVLKEIGDIERVLSRVALGS 60 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKL-KKLPQ------SLEKTLSSM 438 P+D+ +R FL+N L ++ KL +L Q SL + L + Sbjct: 61 ARPRDLVQLRHACAQ-----IPFLRNALAPVVQAKKSKLLGQLDQELGDFKSLHQHLMAA 115 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + ++ P RDG + +G DA LDE R +RD + + + L++K E T I LKI +N Sbjct: 116 IVENPPVLLRDGNVIAEGYDAELDELRQIRDHAGQFLIDLEIKERERTGISTLKIGYNRV 175 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IE+T + A D +I RQT+ N R+ T EL E+++ ++ + AL E Sbjct: 176 SGYYIELTRAQAEQAPAD------YIRRQTLKNTERYITPELKSFEDKVLSSESRALARE 229 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 FE L + E L S IA ID+ A A+ N+ RP T ++ GR Sbjct: 230 KALFEALLENLRENIAHLQMMSSAIAQIDVIANFAHQARLNNWARPEFTPETGIKIQGGR 289 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE S PF ND L + ++ ++TGPNMGGKSTF+RQ ALI ++A Sbjct: 290 HPVVEAL----SKAPFTPNDTFLDVQH-----RMAIITGPNMGGKSTFMRQTALISLLAY 340 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 GSYVPA A +G +D++F+R+GSAD+L++G+STFMVEM ET+ IL+ ATNQS V++DE+ Sbjct: 341 CGSYVPARAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVLMDEV 400 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GRGT+T DGLS+AWA + L + +C L ATH+ ELT+L S N + + N Sbjct: 401 GRGTSTYDGLSLAWACVVDLTKRVKCLCLFATHYFELTELG-SEPGIDNYHVTAQELNGN 459 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN-----QKDM--- 850 +I LHKV G A S+G+QV KLAG+P VI A L+ EK + Q D+ Sbjct: 460 LILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQTSVQSDLFAT 519 Query: 851 --RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 P Q E + + + +K + +D ++P AL+ LY +KA Sbjct: 520 LDSEVTPSTQVIEKVIEVEVSSPAL-DLLKQIEVDNLTPRQALEQLYELKA 569 >gi|322701047|gb|EFY92798.1| MutS2 protein [Metarhizium acridum CQMa 102] Length = 1057 Score = 353 bits (907), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 272/903 (30%), Positives = 426/903 (47%), Gaps = 132/903 (14%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 + ++ R+G FYEL+F+ A + L + L + + G +PM G P + +++ L++ Sbjct: 164 NCVLLTRVGSFYELYFEHADEYAPLLNLKLASKKTNAGP-VPMAGFPFFQLDRFLKILVQ 222 Query: 101 -IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARI 159 + +AI E+ + K + + R V R++TPGTL ++ + P +NY++A+ + Sbjct: 223 DLNRYVAIAEEFPNDAADKVKSGGLMHDRRVARIITPGTLIDENFIDPYANNYVLAIHCV 282 Query: 160 RTEWA-------------------------IAWIDISTGIFKISTSNHDRLISDIMRIDP 194 ++ A +AW+D+STG F +++ L S + RI P Sbjct: 283 DSKEAPKLKSAMVEDHGIRVSPPASPMPLGLAWLDLSTGHFFTQSADLASLPSILSRIGP 342 Query: 195 REIIFSEK---ELSHAEYKSLFETLGNVAVAQPNVFFDHS----ISESRIADYYNITTVD 247 RE++ E + H + L E + + D + ES++ + T Sbjct: 343 REVVLDENIESQKDHGIFSILAEDRHLITYSSSGGLTDMGDWMPLLESKVPESARET--- 399 Query: 248 TFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL- 306 F+ E A +SY+K + P R + + ID + LEI +T+ Sbjct: 400 ----FTSEEVLAGGLVLSYVKGRLQGMTMRLLPPLRHESMQIMNIDKNSLRALEIKQTIR 455 Query: 307 SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK 366 G SLL I ++T +G RL E ++SP T INTR + + FI L + I Sbjct: 456 DGFFRGSLLHAIRRTVTKSGARLLNEWLSSPSTSLDVINTRQNLVARFIAAEHLRDSIIM 515 Query: 367 ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIR--------------SGINIL------N 406 +L+ S D R + + +GRG+ D+ + IR SG ++ Sbjct: 516 LLRRSHDSQRLVQKFSLGRGDADDLLALAHTIRATEDIVTLLHEAAASGTDVAQNECLSG 575 Query: 407 LFLKNDLPEELR---------------------------------------GAVEKLKKL 427 L + DL + L+ G+ E L Sbjct: 576 LLSRIDLTQPLKLARRIKDAIDEEGIVHQHEVEDSEASQMLALAQDIVATEGSQEDASSL 635 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLD----ETRSLRDQSKRIIASLQLKYA 483 P+S +K +S+ + D ++ GA +L + SL D+ ++ SL+ Sbjct: 636 PKSKKKRPTSI--KEYYAEDNDAWIMKPGASTNLKRLHAQLSSLLDEKIKLSNSLR---- 689 Query: 484 EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTR-FTTLELID 542 E+ +L ++ + LG+ + L I + S TR F E Sbjct: 690 EKLGASSLTLRWSPGLGHIAHIKGKDTKNLTD--------IRALSSSRSTRSFHLQEWTA 741 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 L R+ A E + F+ L ++ L + V+ +DI+ + A LA EQN Sbjct: 742 LGQRLDQARFHIRREEQQVFQSLREQVVLNLVKLRRNAAVLDELDITTSFARLAVEQNLV 801 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 RP ++NST + GRHP VE L +Q + F+ NDC + D G LWL+TGPNM G Sbjct: 802 RPKLNNSTTHTIIGGRHPTVEGGLVEQG-RSFVRNDCFVGSQPD---GLLWLITGPNMAG 857 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KSTFLRQNALI I+AQ+G YVPASYA +GIVD +FSRVGSADNL +STFMVEM+ETA Sbjct: 858 KSTFLRQNALITILAQIGCYVPASYAELGIVDAIFSRVGSADNLYRDQSTFMVEMLETAQ 917 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS- 781 IL QAT +SFVI+DEIGRGT DG ++++A + +L N+CR L ATHFH + DL+ S Sbjct: 918 ILKQATPRSFVIMDEIGRGTTPEDGTAVSYACLHHLVTVNQCRTLFATHFHGVADLAASD 977 Query: 782 -LKRFHNATLQV------SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYD 834 L + +Q+ D+ G +++HK+ GI S+ ++V +LAGLP + A Sbjct: 978 GLCKVDGGPVQLYCTDVEEDNQGGFVYVHKLRKGINRRSHALKVARLAGLPERAMDTAKQ 1037 Query: 835 ILK 837 +L+ Sbjct: 1038 VLE 1040 >gi|320580858|gb|EFW95080.1| DNA-binding protein [Pichia angusta DL-1] Length = 945 Score = 353 bits (906), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 264/850 (31%), Positives = 433/850 (50%), Gaps = 86/850 (10%) Query: 43 LVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIG 102 +V ++G FYEL+F A + LG+TL+KR +IP G P + Y+Q G Sbjct: 108 VVLIQVGSFYELYFQQAEKHASMLGLTLSKRVLK-NHEIPFAGFPDYKLEKYLQIAFGQG 166 Query: 103 HRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVA----- 157 + +C+Q + ++++ R V RLVTPGT+ ++ L +NYL+A+ Sbjct: 167 LKAVVCDQ--------QTTAQNVIVRPVTRLVTPGTIIDEALRDYHRTNYLLAIQFPADP 218 Query: 158 ----RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS-EKELSHAEYKSL 212 + + + W+D+ F + +N + L+++I RI+P EI+ + + ++ Sbjct: 219 FKKDALGQKIGMCWVDVGLSQFHVLETNMNELMANITRINPSEILIANDLDIDSLITGKW 278 Query: 213 FETLGNV-----------AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 F LG + +V+ P + F + SE++ SQ E AA Sbjct: 279 FPELGELKKYYISRYSLPSVSTPLLDFANRFSENKR------LVQSRLDKLSQKEAGAAK 332 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS-REQSLLKTIDY 320 + Y+ + K + P+R + + ID A +LE+ T+ G R +L ID Sbjct: 333 VLLHYLNECLPFYKLSFDLPKRSLPNTLMHIDPRAAQDLELTETIVGGFRTGALASIIDK 392 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G RL + SP TD +I R I F+ N I + + ++L+ + D+ R + R Sbjct: 393 TCTVQGSRLLNTWLLSPSTDVEEIRKRQKYIEVFLNNHIFVQELIQLLRKTTDLGRIVRR 452 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAV----EKLKKLP------QS 430 R + + + I I+ ++ +K+ ++L V EK K+ P QS Sbjct: 453 ADNKRADMGEYLELGHTIMI-IDEIHKMVKDCPDKKLVNLVLPLFEKFKEYPALMSLSQS 511 Query: 431 LEKTLSSML--------SDDLPTFKRDGGFLRDGADASLDETRSLRDQSK-RIIASLQLK 481 + T++ +DL R FLR A L E R DQ + R A +Q Sbjct: 512 IINTINPQTLRVKIDTNRNDLEVL-RKYWFLRPTASPKLAELRDKYDQLELRFQALIQQL 570 Query: 482 YAEETKIK-----NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFT 536 A+ K NL I+ + I+V SS S K +++ D + +T S+ +F Sbjct: 571 SAKFEKCGYQGGFNL-IRDPRTTDFVIDVRSSRKS-FKSLVDNMDLQLRERTKSS-AKFW 627 Query: 537 TLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILA 596 T+E L + L E ++ + ++ S L + +I +D+ + +LA Sbjct: 628 TMEWQTLGTEMLFVEQEILREEERIISLIRDTLLSLSTELRQVAPIIEFLDVCSSFYLLA 687 Query: 597 KEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSS--KPFIANDCDLSCPNDKNSGKLWL 654 E+ +P +D ST F +++GRH +VE+ L+ + + + F AN C L +SG+ W+ Sbjct: 688 WEKGLVKPTVDRSTKFEIENGRHLVVEEGLRGRVTGVENFTANSCAL------DSGRGWV 741 Query: 655 LTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFM 714 +TGPNMGGKSTFLRQNALI I+AQ+GSYVPA+ AHIGI+DK+F+RVG++DN+ +S+FM Sbjct: 742 ITGPNMGGKSTFLRQNALIAILAQIGSYVPATKAHIGIIDKVFTRVGASDNIFRHQSSFM 801 Query: 715 VEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHF-- 772 VEM ETA IL +T +S I+DE+GRGT+ ++G++IA+A++ +L + C+ L ATHF Sbjct: 802 VEMNETAIILRDSTERSLAIVDELGRGTSAVEGITIAYASLSHLVKNKNCKVLFATHFGP 861 Query: 773 --HELTDLSKSLKR---FHNATL-QVSDS----NEGIIFLHKVIPGIADHSYGIQVGKLA 822 H+L K L+R F+ TL ++ D +E +IF HK+IPGI+ HS+ ++ +LA Sbjct: 862 EIHKLMKDDKELERRTDFYQTTLTRIHDGDLPIDEKLIFDHKLIPGISSHSHAFEIAQLA 921 Query: 823 GLPNTVISRA 832 G P+ + A Sbjct: 922 GFPSDALELA 931 >gi|262038162|ref|ZP_06011559.1| DNA mismatch repair protein MutS [Leptotrichia goodfellowii F0264] gi|261747810|gb|EEY35252.1| DNA mismatch repair protein MutS [Leptotrichia goodfellowii F0264] Length = 614 Score = 353 bits (906), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 215/636 (33%), Positives = 353/636 (55%), Gaps = 50/636 (7%) Query: 292 IDSAARSNLEILRTLSGSREQ----SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTR 347 I+S R NLE+ ++ RE+ SLL +D + G RL I +PL D +I R Sbjct: 5 INSITRKNLELTKS---QREKTVYGSLLWVLDKCKSSMGTRLLKRYINNPLLDIEEITKR 61 Query: 348 LDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL 407 + + +FI N ++ +++ L++ D+ R L ++ G KD+ +++ +++ I I+ + Sbjct: 62 QNDVQYFIDNILVREDLKEKLENIYDLERLLGKVIFGSENGKDLTALKNTVKASIEIIQI 121 Query: 408 F----LKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDE 463 ND+ + + +L + + ++ P R+G ++ G +A LDE Sbjct: 122 LKDTSFFNDININVLIGIYRL----------IDESIDENAPFTVREGNIIKRGYNAELDE 171 Query: 464 TRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRF 523 + + K + ++ K E T IKN+KIK+N GYFIEVT S+ ++ D + Sbjct: 172 IYKIMNSGKDFLLEIEKKEKEATGIKNMKIKYNKVFGYFIEVTKSNLDMVP------DTY 225 Query: 524 IHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVI 583 I +QT++N RF T EL E+ I N+ +E F+ +S + E L ++ + Sbjct: 226 IRKQTLTNAERFVTPELKKYEDTIINSKAKIEDMEYYLFKEVSTKVKECKTDLVKLAEKL 285 Query: 584 AIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSC 643 A +D+ ++ + +A E +Y RP I N + +KDGRHP+VEK + + F++ND L+ Sbjct: 286 AYLDVIVSFSTVAIENDYIRPEITNDFSIDIKDGRHPVVEKLIGRSD---FVSNDTLLT- 341 Query: 644 PNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSA 703 + +LTGPNM GKST+++Q ALI IMAQ GSYVPAS A + +VDK +R+G++ Sbjct: 342 ----EKERFTVLTGPNMSGKSTYMKQVALISIMAQTGSYVPASSAKLSVVDKYLTRIGAS 397 Query: 704 DNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNR 763 D++ +G+STFMVEM E ++I+N AT +S +ILDE+GRGT+T DG+SIA A EY+HE + Sbjct: 398 DDILTGQSTFMVEMSEVSNIINNATERSLIILDEVGRGTSTFDGVSIATAISEYIHEKIK 457 Query: 764 CRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAG 823 + + ATH+HELT+L + N ++V + ++FL ++ G AD SYGI+V K AG Sbjct: 458 AKTIFATHYHELTELENRYENIVNYRIEVEEKAGKVMFLRNIVKGGADKSYGIEVAKFAG 517 Query: 824 LPNTVISRAYDILKTFEKLYHHNQK-----DMRLYYPEIQTKESKNNLS-------KNDK 871 LP ++ + IL E+ +K + L+ I+ +ES + K DK Sbjct: 518 LPKEILHESKKILHRLEQKKELIEKTIDVHQLSLFGQVIEAQESYQGYNPDFYTEDKTDK 577 Query: 872 L---FVEKIKCLNLDEMSPLTALKTLYAVKAWTLEK 904 + + I+ +++ M+P+ ALK L +KA EK Sbjct: 578 VAEEIIYDIESKDVNNMTPMEALKFLSEIKAKLEEK 613 >gi|255711470|ref|XP_002552018.1| KLTH0B05302p [Lachancea thermotolerans] gi|238933396|emb|CAR21580.1| KLTH0B05302p [Lachancea thermotolerans] Length = 982 Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 271/899 (30%), Positives = 442/899 (49%), Gaps = 99/899 (11%) Query: 22 LKSSTPMMRQYI-EIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +K+S P QY+ + D +V +MG FYEL+F+ A + + L +TLT R GK Sbjct: 96 IKNSLPPSLQYVRDTMDKYKDFVVLTQMGSFYELYFEHADIYAPKLNLTLTSREYAHGK- 154 Query: 81 IPMCGVPVHTANHYIQKLIK-IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 + G PV N +++ L+K +G+ +AI +Q + A N+ L R V R+VTPGT Sbjct: 155 VSFAGFPVQQVNRHLKVLVKELGYSVAIADQFKRTSAASNESNRFL--RRVTRIVTPGTF 212 Query: 140 TEDQLLSPTDSNYLMAV----------ARIRTEWAIAWIDISTGIFKISTSNHDRLISDI 189 ++ + ++ YL+++ I + + W DISTG + + IS + Sbjct: 213 LDEAFENLQENTYLLSIEFPESCVQKLVDINMKVGLCWCDISTGEIFVQQTLLKDTISAV 272 Query: 190 MRIDPREIIFSEK----ELSHAEYKSLFETLGNVAVAQPNVFFDH-SISESRI------- 237 RI PREI+ E+ +L E+ F L + + +H S++ R Sbjct: 273 ARIGPREILLDEELFSFKLEEGEWYPEFVELKRFFIKYQKMPSNHRSMNTFRYLFNSGYL 332 Query: 238 -ADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAA 296 D++ + V FSQ E A + YI++ + P+R+ S + IDS + Sbjct: 333 EGDFFRLENV--LHDFSQKEVAALRNMLLYIEEHLPDTAVNLQEPQRQLTNSLMQIDSRS 390 Query: 297 RSNLEILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFI 355 S LEI T+ + +++ SLL I ++T +G RL ++ +++P D+ +I R + F Sbjct: 391 CSALEITSTMRANTKKGSLLSAIKRTVTPSGSRLLSQWLSAPSLDTAEIKRRQQLVTLFR 450 Query: 356 QNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSG------INILNLFL 409 N L + + LK + D+PR L + G+G+ ++ + ++ I Sbjct: 451 NNHELTELLIRTLKQTYDMPRILQKFSFGKGDATELLQLSHSLQKAEFIGKSIKAKCRTK 510 Query: 410 KNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTF-------------------KRD- 449 + L L + L+ Q + + LSS+ D L F K+D Sbjct: 511 QGVLGNILSSVISPLEYDKQLIGRVLSSLDEDQLMKFTMLQSESESELCEKDQNLEKKDV 570 Query: 450 GGF-------LRDGADASLDET----RSLRDQSKRIIASLQLKYAEETKIKN--LKIKHN 496 F +R GA + E + L + + + + ++ ++K L+++H Sbjct: 571 DAFGESSLWVIRPGAGTRISELHGKHQELLKRRRELCNRFESTISDSVQVKGVQLRLRHT 630 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL- 555 G +I TS++ +L + KD + R + + + ++ + L++R+ L Sbjct: 631 GEYGLYISATSTNIKLLCSLV--KDGMLFRGSPLKILQKSS-QSCWLDHRLWTELGQELE 687 Query: 556 ----LIELESFEILSN---AIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 I+ E ++S+ I++S S+ SQV+ +D+ + A L+ E+N P++D Sbjct: 688 YIVMKIKREENIVISSFKKEFIKKSFSIRRVSQVLDYLDVLTSFAKLSTEKNLSCPVVDT 747 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 S++ +K GRH +VE L +S + F +NDC L N LW++TGPNMGGKSTFLR Sbjct: 748 SSDLDIKSGRHIVVEDGLLSKSLQKFTSNDCRLEASN------LWVITGPNMGGKSTFLR 801 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q A+IVIMAQ+GSYVP A IG+VDK+FSR+GSAD+L + STFMVEM ET IL AT Sbjct: 802 QIAIIVIMAQIGSYVPCESAKIGVVDKIFSRIGSADDLYNQMSTFMVEMTETGYILKGAT 861 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHF-HELTDL--------- 778 +S ILDEIGRGT+ +G+S+A+A ++YL + N+CR L ATHF EL L Sbjct: 862 KRSLAILDEIGRGTSGKEGISLAYAALKYLVDRNQCRSLFATHFGQELKTLVDNHCDEAV 921 Query: 779 SKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILK 837 K + + + + + H + PGI ++S I+V AG P + A LK Sbjct: 922 RKKISYYRSGVYDT--GGDDFCYDHSLTPGICNNSDAIRVAMRAGFPKEALDNARKALK 978 >gi|219685676|ref|ZP_03540490.1| MutS domain III family protein [Borrelia garinii Far04] gi|219672792|gb|EED29817.1| MutS domain III family protein [Borrelia garinii Far04] Length = 776 Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 240/723 (33%), Positives = 391/723 (54%), Gaps = 40/723 (5%) Query: 126 VRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDIST---GIFKISTSNH 182 + R VV ++TPG + ++ L+ +NYL+A++ + ++ ++ID+ST GI S Sbjct: 9 LEREVVEVITPGVIVDEDFLNDDVNNYLVAISDYKNYYSFSYIDLSTSSLGIMFYENSFF 68 Query: 183 DRLISDIMRIDPREIIFSEK-ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYY 241 ++L D+ + P+EII SE + E +L L N P D ++ I +++ Sbjct: 69 EKLKRDLEKYSPKEIIVSENFYYQYLEKLNLSRFLINRV---PAWHLDKDVAIKTIKEHF 125 Query: 242 NITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQ---STLFIDSAARS 298 NI + + G F + +K + I + K + ++ DI S +F+D + Sbjct: 126 NILGLSSLG-FDE-DKPYYISIFLIINHIKNNLKNLLSNIDKIDINNDSSYMFLDDVTQV 183 Query: 299 NLEILRTLSG-SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQN 357 NLE+++ + S + SL ++ T G RL E I +P+ + + INTRLD + FF +N Sbjct: 184 NLELVKNNNDFSSQYSLYSVLNDCKTAMGKRLLREFILNPILNISDINTRLDHVEFFYKN 243 Query: 358 PILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEEL 417 L +++ + D+ R +SR+++ R KD I + + LF K++ Sbjct: 244 ISLTMTLREAFINIWDIERIISRIQMKRYIKKDFLFIEKALSVFFLVKKLFDKHNFDYWN 303 Query: 418 RGAVEK--LKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRII 475 E+ L K+ + +SS SD+L ++ G + LD + L+ + + I Sbjct: 304 FDKFEEDSLSKVCFLINSAISSS-SDEL---------IKRGYNLKLDNLKDLKINANKYI 353 Query: 476 ASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRF 535 +KI NLKI+ NN G F EVT S+ S + F+ QT+++ R+ Sbjct: 354 DEYLESERLLSKINNLKIRKTNNRGLFFEVTKSNYS------QVPPHFMESQTLNSAKRY 407 Query: 536 TTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAIL 595 T +LI LE I NA +S + E E F+ ++ +++ ++ L S+ A ID+ L Sbjct: 408 KTEKLISLEVDINNAEDSVVAFEQEIFDEIAANVVKHNKVLKKVSEFFAYIDLVANFGYL 467 Query: 596 AKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLL 655 AK+ Y RP++ + ++ RHP+VE +K + + F N ++ L+ Sbjct: 468 AKKNEYKRPVLTSDKEIFLEKSRHPVVEHYVK--NVEIFTENFVRIN-----KERYFCLI 520 Query: 656 TGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMV 715 TGPNM GKST+LRQ ALI +MA +GS+VPAS A IGI DK+F R+G++DNLA G STF+V Sbjct: 521 TGPNMAGKSTYLRQVALITLMAHIGSFVPASKALIGITDKIFCRIGASDNLAKGESTFLV 580 Query: 716 EMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHEL 775 EM ETA+IL AT +S +I+DE+GRGT+T DGL+IA++ IEY+ E + R L ATHFHEL Sbjct: 581 EMNETANILRNATEKSLIIMDEVGRGTSTNDGLAIAYSIIEYILEYIKARSLFATHFHEL 640 Query: 776 TDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI 835 + ++ K F N ++++ ++FL ++ + +SYGI V ++AGLP VI RA I Sbjct: 641 SAINH--KAFINLSMKIEKQGNDLVFLREIEEKPSLNSYGIYVARIAGLPLKVIDRASTI 698 Query: 836 LKT 838 L++ Sbjct: 699 LES 701 >gi|213162044|ref|ZP_03347754.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 646 Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 222/691 (32%), Positives = 365/691 (52%), Gaps = 62/691 (8%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IPM G+P Sbjct: 1 MMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPMAGIP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H +Y+ KL+ G +AICEQI P + K V R VVR+VTPGT++++ LL Sbjct: 61 HHAVENYLAKLVNQGESVAICEQIGDPATS-----KGPVERKVVRIVTPGTISDEALLQE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEKELSH 206 N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++++E Sbjct: 116 RQDNLLAAIWQDGKGYGYATLDISSGRFRLSEPADRETMAAELQRTNPAELLYAE---DF 172 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT-----AAA 261 AE +L E + ++ I +R T D G F VE AA Sbjct: 173 AEM-ALIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENASRGLCAAG 226 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 + Y+K TQ + P I E Q ++ +D+A R NLEI + L+G E +L +D + Sbjct: 227 CLLQYVKDTQRTSLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGVENTLAAVLDCT 286 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +T G R+ + P+ ++ + R +I ++ +Q +L+ D+ R L+RL Sbjct: 287 VTPMGSRMLKRWLHMPVRNTDILRERQQTIGALQDT---VSELQPVLRQVGDLERILARL 343 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP-QSLEKT------ 434 + P+D+A +R + LP EL +E + P Q+L K Sbjct: 344 ALRTARPRDLARMRHAFQQ------------LP-ELHAQLETVDSAPVQALRKKMGDFAE 390 Query: 435 ----LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L + D P RDGG + G LDE R+L D + + L+++ E T + Sbjct: 391 LRDLLERAIIDAPPVLVRDGGVIAPGYHEELDEWRALADGATDYLDRLEIRERERTGLDT 450 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ +N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + Sbjct: 451 LKVGYNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPELKEYEDKVLTS 504 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 AL +E + ++ L + ++ L ++ +A +D+ + LA A NY P + Sbjct: 505 KGKALALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLAERAWTLNYTCPTFTDKP 564 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNMGGKST++RQ Sbjct: 565 GIRITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQT 615 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVG 701 ALI ++A +GSYVPA IG +D++F+RVG Sbjct: 616 ALIALLAYIGSYVPAQNVEIGPIDRIFTRVG 646 >gi|228966712|ref|ZP_04127756.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar sotto str. T04001] gi|228792811|gb|EEM40369.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar sotto str. T04001] Length = 793 Score = 350 bits (898), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 225/729 (30%), Positives = 395/729 (54%), Gaps = 52/729 (7%) Query: 126 VRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRT-EWAIAWIDISTGIFKIS--TSNH 182 +RR VV+L+TPGT+ E + + ++N+L A+ +A+A D++TG ++ T + Sbjct: 1 MRREVVQLITPGTMMEGRTIDEKENNFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSV 60 Query: 183 DRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNV-----AVAQPNVFFDHSISESRI 237 + ++ ++ +EI+ + S E L ETL A A P +H + Sbjct: 61 EDILLEVYATGSKEIVV-DSSFSKDELNKLTETLKMTISYEDATAIPE-GLEHLVK---- 114 Query: 238 ADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQST---LFIDS 294 N++ + ++ +Y+ +TQ K ++ + + +I T + ID Sbjct: 115 ----NVSQAKLIKAIGRL--------FNYLIRTQ---KRSLDHLQPVEIYYTNQFMKIDV 159 Query: 295 AARSNLEILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINF 353 ++ NLE+ TL + + SLL +D + T GGR+ + + PL K+ RL+ + Sbjct: 160 HSKRNLELTETLRTKEKTGSLLWLLDKTKTAMGGRMLKQWMERPLIQKEKVEERLEMVET 219 Query: 354 FIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FLKN 411 F+ + L +++ LK D+ R ++ G +D+ +R + IL L N Sbjct: 220 FVNDYFLREDLKEKLKEVYDLERLAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDN 279 Query: 412 DLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQS 471 L + +SL + L + ++ P +DG ++DG + LD+ R + Sbjct: 280 AYAARLIQGADPC----ESLTELLGRSIQENPPLSIKDGDIIKDGYNDKLDQYRYVSKNG 335 Query: 472 KRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSN 531 K IA L+ + + T +K+LKI +N GY+IEVT ++ + L + R+ +QT++N Sbjct: 336 KTWIAELEKRERDITGVKSLKIGYNRIFGYYIEVTKANLAAL-----PEGRYERKQTLAN 390 Query: 532 LTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIA 591 RF T EL + E I A + +E + F L + L + ++VI+ +D+ + Sbjct: 391 AERFITDELKEKETLILEAEEKIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQS 450 Query: 592 LAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGK 651 A +++E+ + +P++ +KDGRHP+VEK L + K ++ NDC + D Sbjct: 451 FATVSEEEQFVKPVLTTKREIFIKDGRHPVVEKVL---NGKLYVPNDCIMPEKMD----- 502 Query: 652 LWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRS 711 ++L+TGPNM GKST++RQ AL+ +M+Q+G +VPA+ A + + D++F+R+G+AD+L SG+S Sbjct: 503 VFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQS 562 Query: 712 TFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATH 771 TFMVEM+E + + A+ +S ++ DEIGRGT+T DG+++A A IE++H+ + L +TH Sbjct: 563 TFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTH 622 Query: 772 FHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISR 831 +HELT L +SL + N + + N ++FLHK+ G AD SYGI V +LA LP+++I+R Sbjct: 623 YHELTVLEESLDQLKNVHVSAIEENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIAR 682 Query: 832 AYDILKTFE 840 A ++L E Sbjct: 683 AKEVLAQLE 691 >gi|254569424|ref|XP_002491822.1| DNA-binding protein of the mitochondria involved in repair of mitochondrial DNA [Pichia pastoris GS115] gi|238031619|emb|CAY69542.1| DNA-binding protein of the mitochondria involved in repair of mitochondrial DNA [Pichia pastoris GS115] Length = 957 Score = 350 bits (897), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 274/879 (31%), Positives = 433/879 (49%), Gaps = 124/879 (14%) Query: 43 LVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIG 102 +V ++G FYEL+F A+ + L +TL+ + K +IP G P H + Y++ + +G Sbjct: 121 IVLTQVGSFYELYFQHAIKYAPELNLTLSSK-KIRDMEIPFAGFPDHAVDKYLKMIFDLG 179 Query: 103 HRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIR-- 160 H IC Q E K ++R V RL+TPGT+ +D L ++NYL+ + + Sbjct: 180 HTAVICNQTNGLYENK-------IQRPVNRLITPGTVIDDSLRDYHNNNYLLTITFPKDP 232 Query: 161 ------TEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK------------ 202 +AW D+ G F + + +L++ + RI P EI+ +E+ Sbjct: 233 LKEIDGVNVGLAWADVGLGTFHVLETTLSQLMTHVSRISPSEILINEEVDLETLISGKWY 292 Query: 203 -ELSHAEYKSLFETLGNVAVAQP--NVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 EL E+K F T + A+ N FF + +NI + +F Q E++A Sbjct: 293 PEL--VEFKRYFITRQKLPSARKKINSFFKRFVDPE-----HNIKAA--YDNFKQKEQSA 343 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS-REQSLLKTI 318 + + Y+ + K P R + + ID +LE+++T G R SL+ I Sbjct: 344 MLSLLHYLDECIPNYKTNFSSPTRSISNTLMQIDPKTMLDLELIQTRQGGFRTGSLVSII 403 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D ++T AG R +++P + + I RL + F N +L ++ ++K + D+ R + Sbjct: 404 DLTLTHAGSRRLKSWLSAPSAELSIIQERLSLVELFRSNRLLSEELRLLMKDTADIKRLM 463 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 R+ G+ +P ++ ++ IL L L E ++KL LP L Sbjct: 464 RRINNGKVDPMELVLV------ARTILQLQDMESLISEQSPHIQKLL-LP------LYQT 510 Query: 439 LSDD------------LPTFKRDGGFLRDGADA-------SLDETRS-----LRDQSKRI 474 LSDD + + G + D S+ ET S LR + R+ Sbjct: 511 LSDDGLLEKLSKELLTVIDVENLGKKTENRLDTTVIRKYWSITETVSPKLVTLRKRYSRL 570 Query: 475 I---ASLQLKYAEETKIKNLKIKHNNNLG------YFIEVTSSSASVLKKDLE-SKDRFI 524 + L Y E K N+ K + L + +E+ S++A+ L + KDR Sbjct: 571 VNKCTQLLETYESELKANNINYKGLHLLKDVRSGEFLLEIKSTNANSLASTVSIFKDRL- 629 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIE----LESFEILSNAIIEQSESLDNAS 580 R + R E +L R+ T +L E LESF + ++ + + NAS Sbjct: 630 -RDKTRSSCRLVDPEWTELGTRLVE-TEYLILKEEETILESFRV---RLLALTNDIRNAS 684 Query: 581 QVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSS--KPFIAND 638 +I D+ I+ +ILA+ N +P ID S V DGRH +VE+ LKQ + F AND Sbjct: 685 YIIEKQDVLISFSILARNMNLNKPHIDESLELDVVDGRHIVVEEGLKQNLGEIQDFTAND 744 Query: 639 CDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFS 698 C L W++TGPNMGGKSTFLRQNALIVI+AQ+GS+VPAS A IGIVDK+F+ Sbjct: 745 CQLDTKKPT-----WIITGPNMGGKSTFLRQNALIVILAQIGSFVPASSARIGIVDKIFT 799 Query: 699 RVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYL 758 R+GS+DN+ +STFMVEM ETA+IL ++T +S I+DE+GRGT+ +G++IA++ + +L Sbjct: 800 RIGSSDNIYRNQSTFMVEMTETAAILKESTPRSLAIVDELGRGTSMREGIAIAYSCLFFL 859 Query: 759 HETNRCRGLLATH--------------FHELTDLSKS--LKRFHNATLQVSDSNEGIIFL 802 +CR L ATH F EL + ++ ++ N +L +SD IIF Sbjct: 860 STRIKCRTLFATHYGAELEALLLEDTAFMELIEFQRTRIIELEKNTSLPISDR---IIFD 916 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 H++ PGI+ HSYG+++ +LAG P I ++ +E+ Sbjct: 917 HRLKPGISAHSYGLEIAELAGFPRESIEVGRMVMDRYEE 955 >gi|323337326|gb|EGA78579.1| Msh1p [Saccharomyces cerevisiae Vin13] Length = 858 Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 273/884 (30%), Positives = 429/884 (48%), Gaps = 122/884 (13%) Query: 48 MGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLI-KIGHRIA 106 MG FYEL+F+ A+ + L I+LT R GK +P G PVH + +++ L+ G+ + Sbjct: 1 MGSFYELYFEQAIRYAPELNISLTNRAYSHGK-VPFAGFPVHQLSRHLKMLVXNCGYSVT 59 Query: 107 ICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLM----------AV 156 I EQ + A NK R V R+VTPGT ++ + ++ YL+ V Sbjct: 60 IAEQFKKKDVADNEANK--FYRRVTRIVTPGTFIDEAFENLRENTYLLNIEFPENCMSQV 117 Query: 157 ARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS-HAEYKSLFET 215 A + I W D+STG + L+S I RI P+EI+ E+ L H E + + Sbjct: 118 ADTSLKVGICWCDVSTGEIFVQQVYLRDLVSAITRIQPKEILLDERLLEFHIESGTWYPE 177 Query: 216 LGNVAVAQPNVFFDHSISESR-IADYYNITTVD-----------TFGSFSQVEKTAAAAA 263 L V + + + + S+ R I +Y + + +F+Q E A Sbjct: 178 L--VELKKFFIKYQKMPSQHRTIESFYGLFNLGGKEATERQLKIQXQTFTQKELAALRNT 235 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSI 322 + Y+ P+R+ + + IDS + LE+ T+ +++ SLL +I ++ Sbjct: 236 LIYVSNHLPDFSINFQIPQRQLATAIMQIDSRTSTALELHSTVRDNNKKGSLLSSIRRTV 295 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T +G RL ++ ++ P D +I R + FF N + ++ +LK D+ R L + Sbjct: 296 TPSGTRLLSQWLSGPSLDLKEIKKRQKIVAFFKDNRDITETLRTMLKKVNDLSRILQKFS 355 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKND--LPEELRGAVEKLKKLPQSLEKTLSSMLS 440 GRGE ++ + + I L N + L+ ++ +L +SL L Sbjct: 356 FGRGEALELIQMARSLEVSREIRKYLLNNTSLMKATLKS---QITQLTESL--NFEKNLI 410 Query: 441 DDLPTF------------KRDGGFLR-------DGADASLDETRSLRD---------QSK 472 DD+ F K++ R D +++ DE LRD + + Sbjct: 411 DDILKFLNEEELAKSQDAKQNADVTRMLDIDVKDKKESNKDEIFELRDFIVNPSFNTKLR 470 Query: 473 RIIASLQLKYAEETKI--------------KNLKIKHNNNLGYFIEVTSSSASVLK---- 514 ++ + Q + ++T+ K +K N Y + VT +++S+ K Sbjct: 471 KLHDTYQGVWQKKTEYNALLKGFFVGDLGAKTFTLKERQNGEYALHVTGTASSLKKIDEL 530 Query: 515 --KDLESKDRFIHRQTMSNLTRFTT----------LELIDLENRITNATNSALLIELESF 562 K E H S+ TR+ + LEL++L+ R A +I+L Sbjct: 531 ISKSTEYHGSCFHILQKSSQTRWLSHKIWTDLGHELELLNLKIR----NEEANIIDL--- 583 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIV 622 I++S + + + +D + A+LA E+N P +D S V +GRH +V Sbjct: 584 --FKRKFIDRSNEVRQVAITLGYLDTLSSFAVLANERNLVCPKVDESNKLEVVNGRHLMV 641 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 E+ L +S + F AN+C+L+ N LW++TGPNMGGKSTFLRQNA+IVI+AQ+G + Sbjct: 642 EEGLSARSLETFTANNCELAKDN------LWVITGPNMGGKSTFLRQNAIIVILAQIGCF 695 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VP S A +GIVDKLFSRVGSAD+L + STFMVEMIET+ IL AT +S ILDEIGRGT Sbjct: 696 VPCSKARVGIVDKLFSRVGSADDLYNEMSTFMVEMIETSXILQGATERSLAILDEIGRGT 755 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLLATHF-HELTD---------LSKSLKRFHNATLQV 792 + +G+SIA+AT++YL E N+CR L ATHF EL +S+ +K + + + Sbjct: 756 SGKEGISIAYATLKYLLENNQCRTLFATHFGQELKQIIDNKCSKGMSEKVKFYQSGITDL 815 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 +N + HK+ PGI S I+V +LAG P + A +IL Sbjct: 816 GGNN--FCYNHKLKPGICTKSDAIRVAELAGFPMEALKEAREIL 857 >gi|303321472|ref|XP_003070730.1| DNA mismatch repair family protein [Coccidioides posadasii C735 delta SOWgp] gi|240110427|gb|EER28585.1| DNA mismatch repair family protein [Coccidioides posadasii C735 delta SOWgp] gi|320040196|gb|EFW22129.1| DNA mismatch repair protein mutS [Coccidioides posadasii str. Silveira] Length = 999 Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 268/897 (29%), Positives = 442/897 (49%), Gaps = 118/897 (13%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 + ++ R+G FYEL+F+ A + L + L + K G +PM G P + + +++ L++ Sbjct: 95 NCVLLTRVGGFYELYFEQAEEFAPLLNLKLACK-KTSGGSVPMAGFPFYQLDRFLKILVQ 153 Query: 101 -IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAV--- 156 + +AI E+ + + K + + R V R+VTPGTL +++ + ++N+L+A+ Sbjct: 154 DLQKYVAISEEFTNNVTEKAKSGGLMFDRKVARIVTPGTLIDEKFMDHYENNFLLALYVN 213 Query: 157 ---------ARIRTE------------WAIAWIDISTGIFKISTSNHDRLISDIMRIDPR 195 A R ++W+D+STG F + L S + RI + Sbjct: 214 TSDMQKETKAMARPSPNQLFNSSHSHPVGLSWLDLSTGDFFTQYTTRLMLPSALSRIGAK 273 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISE--SRIADY---YNITTVDTFG 250 EII E+ SL + + N+ V Q + S+ + D+ + Sbjct: 274 EIILDERL-----NDSLKQEMQNL-VGQDHRLLTCFRSQDIKPMCDWSECFETPIPRELA 327 Query: 251 SFSQVEKTAAAAAISYIKKTQMVNKPT-IGYPEREDIQSTLFIDSAARSNLEILRTL-SG 308 + VE+TAA + + QM + P R+ ++ T+ ID + LEIL T G Sbjct: 328 ATFTVEETAACHILLEYVQVQMQGVGVKLQAPRRKHLEETMAIDRNSLKGLEILETARDG 387 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKIL 368 + SLL + + T +G RL +R+ SP IN RLD ++ FI++ L I +L Sbjct: 388 LGKGSLLHAVRRTSTKSGARLLRDRLTSPSASLPVINERLDLVSEFIEDIELEESITSLL 447 Query: 369 KSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLK---NDLPEELRGA----- 420 K S D R + + +GRG+ DI + I + I ++ L+ N+ E G+ Sbjct: 448 KRSYDAQRLVQKFSLGRGDADDILCLSRAIDASSRIRSVILERLENNKQAEKVGSTPRRT 507 Query: 421 ----VEKLK-KLPQSLEKTLSSMLSD--------------------------------DL 443 VE+L P++L + + + + DL Sbjct: 508 LYSMVERLTMHGPEALSRRILQTIDEEALLRKQRMEEEDAADAAALAHEVIANEGSLEDL 567 Query: 444 PTFKRD-----GGFLRDGADASLDETRSL---RDQS---KRIIASLQLKYAEETKIKN-- 490 + + G +D +D+ DE S RD S +R+ SL+ YAE+ + + Sbjct: 568 ESMPKRVKSQRTGKSKDLSDSEADEQNSWIMQRDASVTLQRLHKSLESLYAEKASLTDRL 627 Query: 491 --------LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQ-TMSNLTR-FTTLEL 540 L +K LG+ + + S A D+ +HR + S TR F Sbjct: 628 RKDSNTASLCLKWTPGLGHIVHMKGSKAMAQSLDVLG----VHRTVSSSKSTRSFHLPSW 683 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 L RI E F+ L +I L + V+ +D++ + A LA+EQ Sbjct: 684 TKLGARIDEMKLQIRSEEQRIFKSLREDVIRNLVKLRRNAAVLDELDVACSFASLAREQR 743 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 RPI++ + + GRHP V+ L+++ +PF+ NDC + ++WL+TGPNM Sbjct: 744 LTRPILNMGYSHKIIGGRHPTVKLGLEEKG-RPFVNNDCFIG-----GQERIWLITGPNM 797 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GKSTFLRQNALI I+AQ+GS+VPA YA +G+VD++FSR+G+AD+L +STFMVEM+ET Sbjct: 798 AGKSTFLRQNALITILAQVGSFVPAEYAELGMVDQIFSRIGAADDLFRDQSTFMVEMLET 857 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 A+IL A+ +SFVI+DE+GRGTA DG++I +A +++LH+ ++CR L ATHFH L +++ Sbjct: 858 AAILKHASRRSFVIMDEVGRGTAPEDGIAIGFACLQHLHDVSKCRTLFATHFHSLAEMTS 917 Query: 781 SLKRFHN-ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 + + T V D++ F+HK+ G+ +S+ ++V +LAG+P +VI A +L Sbjct: 918 NFENLGRYCTSIVEDTDGSFSFIHKLQRGVNRNSHALKVARLAGVPQSVIDVAESVL 974 >gi|296535099|ref|ZP_06897346.1| DNA mismatch repair protein MutS [Roseomonas cervicalis ATCC 49957] gi|296264574|gb|EFH10952.1| DNA mismatch repair protein MutS [Roseomonas cervicalis ATCC 49957] Length = 426 Score = 348 bits (893), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 182/415 (43%), Positives = 255/415 (61%), Gaps = 11/415 (2%) Query: 427 LPQ-SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE 485 +PQ S L L++ LP DG + G D LD + LRD ++ IA++Q + A+ Sbjct: 17 VPQGSPRAELERALNEALPARLEDGNLVAPGYDGELDALKRLRDDARGAIAAMQAELAQA 76 Query: 486 TKIKNLKIKHNNNLGYFIEVTSSSASVLKKD----LESKDRF-IHRQTMSNLTRFTTLEL 540 + ++KI+H+ GY E+ + + L ++ LE IHRQTM+N RFT L Sbjct: 77 WGVASVKIRHHQQFGYLAEMPAIAGEKLLREKPAQLEGGPLAPIHRQTMANAHRFTCTAL 136 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 +L+ +++ A A E L ++ + +D A+ +A IDI A A LA Sbjct: 137 AELDRKLSAAGEQAAKREALVVRHLRGLCLKAARQVDAAAMAMAEIDIHAAAAELAAGGG 196 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 +CRP + +F ++ GRHP+VE L + F+ ND DLS P + L LLTGPNM Sbjct: 197 WCRPELTERPDFRIRQGRHPVVEAALARSRGPAFVPNDADLS-PGQR----LCLLTGPNM 251 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GKSTFLRQNAL+V++AQ G +VPA A +G+VD+LFSRVG+AD++A GRSTFMVEM ET Sbjct: 252 AGKSTFLRQNALMVVLAQAGMFVPARQARLGLVDRLFSRVGAADDIAGGRSTFMVEMTET 311 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 A+ILNQAT +S V+LDE+GRGTAT DGL+IAWA +E LH+ R R + ATHFHELT L+ Sbjct: 312 AAILNQATPRSLVVLDEVGRGTATWDGLAIAWAVLEALHDRIRARAIFATHFHELTALAP 371 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI 835 L AT++V + ++F H V PG A+ S+G+ V +LAG+P V +RA + Sbjct: 372 KLPELQLATMKVREHRGEVVFQHTVGPGAAEKSWGLHVARLAGVPRGVTARAGAV 426 >gi|50293845|ref|XP_449334.1| hypothetical protein [Candida glabrata CBS 138] gi|49528647|emb|CAG62308.1| unnamed protein product [Candida glabrata] Length = 949 Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 268/914 (29%), Positives = 447/914 (48%), Gaps = 91/914 (9%) Query: 4 EFSSPQKLYSEQIDLEE-NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLA 62 EF + + ID E N K+ P + ++ S PD +V +MG F+EL+FD A Sbjct: 39 EFIANDARITRTIDEESTNTKTLPPSLLYVQKLISQYPDHVVLTQMGSFFELYFDHASTY 98 Query: 63 SRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK-IGHRIAICEQIESPLEAKKRG 121 + L I LT+R GK +P G PV + +++ L++ G+ + + EQ + A Sbjct: 99 APLLNIALTQRTYTHGK-VPFAGFPVPQLSRHLKALVQDYGYSVVVAEQFKKDGYATNEN 157 Query: 122 NKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMA----------VARIRTEWAIAWIDIS 171 N+ R V R+VTPGT ++ L + +++ +L+ VA I+W DIS Sbjct: 158 NR--FYRRVTRIVTPGTFIDEALDNYSENTFLLTIEFPENFTNYVAEDNLRIGISWCDIS 215 Query: 172 TGIFKISTSNHDRLISDIMRIDPREIIFSEKELSH-----------AEYKSLF--ETLGN 218 TG I L++ I RI P+EI+ + +ELS AE K F Sbjct: 216 TGEIYIQELPLKDLMNAITRIKPKEILLNARELSDDIISGNWYPQLAELKRYFINYYTTT 275 Query: 219 VAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTI 278 + +FD + +R + ++ +S E A +SY+ + Sbjct: 276 TRYRTLDTYFDM-FAATRASGMRQRLRME-LNEYSIKETAALRNLLSYVAEHLPECAINF 333 Query: 279 GYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASP 337 +P+R+ L IDS LE+ T+ S+ +LL T+ ++T G RL ++ ++ P Sbjct: 334 QFPKRQITTDILQIDSRTTKALELHSTIRDNSKRGTLLNTMRRTVTPMGTRLLSQWLSGP 393 Query: 338 LTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG 397 + +I R ++ F+ + + I LK D+ + L + GRG P ++ + Sbjct: 394 SMNIKEIKLRQSIVSLFLADKRSHDKIISELKKIQDIVKLLQKFNFGRGTPLEMLELVKS 453 Query: 398 IRSGI---NILNLFLKNDLPEELRGAVEKLKKL--PQSLEKTLSSMLSDD---------- 442 +++ ++LN LK + G E +++L P+ + +S+ L+++ Sbjct: 454 LKTAQVLQSLLNDLLKESNGKSKNGISEIIERLTFPELFLEEISNALNEEHIIYQGERTF 513 Query: 443 ------------LPTFK-----RDGGF---------LRDGADASLDETRSLRDQSKRIIA 476 LP + +D G+ + L E L Q + + Sbjct: 514 NTEGEIAIKETILPDERAQLKSKDNGYSLKLIINPEFSSAIQSLLAERSQLLSQKQNLRK 573 Query: 477 SLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASV---LKKDLESKDR--FIHRQTMSN 531 + + + +K+ +K + + I VT++S + LK E+K+ F Q S Sbjct: 574 DYETFFIDRFGVKSFLLKQKASGEFVIHVTATSTVITLLLKHLKENKESLGFTIVQKSSQ 633 Query: 532 LTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIA 591 DL +++ S E + + I+++S+ + + I ID + Sbjct: 634 TCWLMHKSWSDLADKLNQNEQSIRYAEDGIIDGFISEILKKSDDIRVVADAIGYIDTLCS 693 Query: 592 LAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGK 651 A LA+E+ +P +D + +F + DGRH +VE LK+++ PF AN+CDLS S Sbjct: 694 FATLAEEKQLIKPKVDLTRSFEIVDGRHLVVEDALKKKNLVPFTANNCDLS------SND 747 Query: 652 LWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRS 711 +W+++GPNMGGKSTFLRQNA+I I+AQ+G +VP AHIG+VDK++SRVGSAD+L + S Sbjct: 748 IWVISGPNMGGKSTFLRQNAIIAILAQIGCFVPCRKAHIGLVDKIYSRVGSADDLYNDMS 807 Query: 712 TFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATH 771 TFMVEM+ET+ ILN AT++S ILDEIGRGT+ +G+++A+ T+++L + N+CR L ATH Sbjct: 808 TFMVEMVETSLILNGATDRSLAILDEIGRGTSGKEGVAVAYGTLKHLLQNNKCRSLFATH 867 Query: 772 F-HEL-----TDLSKSLKRFHNATLQVSDSNEGIIFL--HKVIPGIADHSYGIQVGKLAG 823 + EL DLS+ R H + ++N+ F HK+ PGI+ S ++V ++AG Sbjct: 868 YAQELKQVADQDLSEDTHRIHYFQTSIRETNDPNKFYYDHKMRPGISQKSDALKVARIAG 927 Query: 824 LPNTVISRAYDILK 837 P ++ A LK Sbjct: 928 FPQDALNDASTALK 941 >gi|45645385|gb|AAS73292.1| DNA mismatch repair protein [Haemophilus influenzae] Length = 636 Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 215/664 (32%), Positives = 362/664 (54%), Gaps = 36/664 (5%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 EEN + TPMM+QY+++K+ NPD L+FYRMGDFYELF+DDA A+ L I+LTKRG+ G Sbjct: 4 EENFQQHTPMMQQYLKLKAENPDILLFYRMGDFYELFYDDAKKAATLLDISLTKRGQSAG 63 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPM G+P H Y+ KL+++G +AICEQI P + K V R +VR+VTPGT Sbjct: 64 QPIPMAGMPYHAVEGYLAKLVQLGESVAICEQIGDPTTS-----KGPVERQIVRIVTPGT 118 Query: 139 LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 ++++ LL N + AV + + ++ +A +D+++G F++ ++ + L +++ RI P E+ Sbjct: 119 VSDEALLPERQDNLIAAVYQEKEKFGLATLDMTSGRFQLCEPADKETLRAELQRIAPVEL 178 Query: 198 IFSEK--ELSHAEY-KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFS 253 ++ E+ E++ E+ K L +P F+ S + + + + + FG S Sbjct: 179 LYCEEFNEMAAIEHCKGLRR--------RPIWEFELSTAITLLNRQFGTKDLRAFGVEKS 230 Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 + +AA + Y K+TQ P I Q + +D+A R NLE+ + L+G E + Sbjct: 231 PLGLSAAGCLLQYAKETQRTALPHIQSISLIQNQDCIQLDAATRRNLELTQNLAGGTENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D +T G RL I P+ D K+ R SI + N L++ +Q L+ D Sbjct: 291 LSSVLDKCVTPMGSRLLKRWIHQPVRDVEKLKQRQQSIAEIL-NFDLVDELQPYLQLVGD 349 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R L+R+ + P+D+ +R + I +L ++ P L ++ + + Sbjct: 350 MERILARVALRSARPRDLTRLRTALEQ-IPVLRTIVQQKTPPFLTALFSQIADFSEQYD- 407 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L L + P RDGG + +G A LDE R L D + + + +L+ + E T I LKI Sbjct: 408 LLQRALIETPPLLIRDGGVIAEGYHAELDEWRMLSDGATQYLENLEKRERESTGIDTLKI 467 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GY+I+++ A ++ ++ RQT+ N R+ EL + E+++ + + Sbjct: 468 GFNAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAERYIIPELKEYEDKVLKSKGA 521 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 AL +E + ++ L + ++ +L AS ++ +D+ + LA A NY P + + Sbjct: 522 ALALEKQLYDELFDLLLPHLGTLQLASLALSELDVLVNLAERADTLNYVMPTFCDEVSVK 581 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +++GRHP+VE+ LK PFIAN +L+ ++ L ++TGPNMGGKST++RQ ALI Sbjct: 582 IENGRHPVVEQVLK----DPFIANPVELN-----HNRHLLVITGPNMGGKSTYMRQTALI 632 Query: 674 VIMA 677 ++A Sbjct: 633 TLLA 636 >gi|119195609|ref|XP_001248408.1| MutS protein homolog [Coccidioides immitis RS] Length = 999 Score = 347 bits (891), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 271/899 (30%), Positives = 444/899 (49%), Gaps = 122/899 (13%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 + ++ R+G FYEL+ + A + L + L + K G +PM G P + + +++ L++ Sbjct: 95 NCVLLTRVGGFYELYLEQAEEFAPLLNLKLACK-KTSGGSVPMAGFPFYQLDRFLKILVQ 153 Query: 101 -IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMA---- 155 + +AI E+ + + K + + R V R+VTPGTL +++ + ++N+L+A Sbjct: 154 DLQKYVAISEEFTNNITEKAKSGGLMFDRKVARIVTPGTLIDEKFMDHYENNFLLALYVN 213 Query: 156 ----------VARIRTEW----------AIAWIDISTGIFKISTSNHDRLISDIMRIDPR 195 +AR + ++W+D+STG F + L S + RI + Sbjct: 214 TSDMQKETKAMARPSPDQLFSSSHSHPVGLSWLDLSTGDFFTQYTTRLMLPSALSRIGAK 273 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPN----VFFDHSISE-SRIADYYNITTVDTFG 250 EII E+ SL + + N+ V Q + F I S ++ + Sbjct: 274 EIILDERL-----NDSLKQEMQNL-VGQDHRLLTCFRSQDIKPMSDWSECFETPIPRELA 327 Query: 251 SFSQVEKTAAAAAISYIKKTQMVNKPT-IGYPEREDIQSTLFIDSAARSNLEILRTL-SG 308 + VE+TAA + + QM + P R+ ++ T+ ID + LEIL T G Sbjct: 328 ATFTVEETAACHILLEYVQVQMQGVGVKLQAPRRKHLEETMAIDRNSLKGLEILETARDG 387 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKIL 368 + SLL + + T +G RL +R+ SP IN RLD ++ FI++ L I +L Sbjct: 388 LGKGSLLHAVRRTSTKSGARLLRDRLTSPSASLPVINERLDLVSEFIEDIELEESITSLL 447 Query: 369 KSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLK---NDLPEELRGA----- 420 K S D R + + +GR + DI + I + I ++ L+ N+ E G+ Sbjct: 448 KRSYDAQRLVQKFSLGRADADDILCLSRAIDASSRIRSVILERLENNKQAEKVGSTPRRT 507 Query: 421 ----VEKLK-KLPQSLEKTLSSMLSD--------------------------------DL 443 VE+L P++L K + + + DL Sbjct: 508 LYSMVERLTMHGPEALSKRILQTIDEEALLRKQRMEEEDAADAAALAHEVIANEGSPEDL 567 Query: 444 PTFKRD-----GGFLRDGADASLDETRSL---RDQS---KRIIASLQLKYAE-------- 484 + + G +D +D+ DE S RD S +R+ SL+ YAE Sbjct: 568 ESMPKRVKSQRTGKSKDLSDSEADEQNSWIMQRDASVTLQRLHKSLESLYAEKASLTDRL 627 Query: 485 --ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQ-TMSNLTR-FTTLEL 540 ++K +L +K LG+ + + S A D+ +HR + S TR F Sbjct: 628 RKDSKTASLCLKWTPGLGHIVHMKGSKAMAQSLDVLG----VHRTVSSSKSTRSFHLPSW 683 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 L RI E F+ L +I L + V+ +D++ + A LA+EQ Sbjct: 684 TKLGARIDEMKLQIRSEEQRIFKSLREDVIRNLVKLRRNAAVLDELDVACSFASLAREQR 743 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 RPI++ + + GRHP V+ L+++ +PF+ NDC + ++WL+TGPNM Sbjct: 744 LTRPILNMGYSHKIIGGRHPTVKLGLEEKG-RPFVNNDCFIG-----GQERIWLITGPNM 797 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GKSTFLRQNALI I+AQ+GS+VPA YA +G+VD++FSR+G+AD+L +STFMVEM+ET Sbjct: 798 AGKSTFLRQNALITILAQVGSFVPAEYAELGMVDQIFSRIGAADDLFRDQSTFMVEMLET 857 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 A+IL A+ +SFVI+DE+GRGTA DG++I +A +++LH+ ++CR L ATHFH L +++ Sbjct: 858 AAILKHASRRSFVIMDEVGRGTAPEDGIAIGFACLQHLHDVSKCRTLFATHFHSLAEMTS 917 Query: 781 ---SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 +L R+ T V D++ F+HK+ G+ +S+ ++V +LAG+P +VI A +L Sbjct: 918 NFGNLGRY--CTSIVEDTDGSFSFIHKLQRGVNRNSHALKVARLAGVPQSVIDVAEAVL 974 >gi|254585413|ref|XP_002498274.1| ZYRO0G06424p [Zygosaccharomyces rouxii] gi|238941168|emb|CAR29341.1| ZYRO0G06424p [Zygosaccharomyces rouxii] Length = 954 Score = 347 bits (890), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 273/908 (30%), Positives = 434/908 (47%), Gaps = 91/908 (10%) Query: 6 SSPQKLYSEQIDLEENLKSSTPMMRQYI-EIKSINPDSLVFYRMGDFYELFFDDALLASR 64 S L + DL + ++ P QY ++ +V +MG FYEL+F+ A + + Sbjct: 60 SKSSNLSEQSTDLRKKSQTQLPPSLQYARDLMDRYKSHVVLTQMGSFYELYFEHATMYAP 119 Query: 65 CLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK-IGHRIAICEQIESPLEAKKRGNK 123 L I+LT + GK +P G PV N +++ L+ G+ + I +Q + A NK Sbjct: 120 QLNISLTSKNYTFGK-VPFAGFPVPQLNRHLKVLVNNYGYSVTIADQFKRDTPADNDVNK 178 Query: 124 SLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAV----------ARIRTEWAIAWIDISTG 173 R V R+VTPGT ++ + ++ +L+ + A + + W D+STG Sbjct: 179 --FYRRVTRIVTPGTFIDEAFENLQENTHLLNIEFPENCMKNLADPDMKIGLCWCDVSTG 236 Query: 174 IFKISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSIS 233 + L S I RI PREI+ E EL+ +S + V + + + + Sbjct: 237 EISVQQILLKDLASAITRIQPREILLDE-ELAQFNLESGYWYSELVELKKYFMKYQKLPQ 295 Query: 234 ESRIAD-YYNITTVD-----------TFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYP 281 R D +Y + T TF F+Q E A + Y+ + P Sbjct: 296 RHRTMDTFYGLFTAGNSKEGINQLKITFQQFTQKEIAALRNILIYVSEHLPDFHMNFQVP 355 Query: 282 EREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSITGAGGRLFAERIASPLTD 340 +R+ S + IDS + LE+ ++ +R++ +LL T+ ++T G RL + ++ P D Sbjct: 356 QRKITASIMQIDSRTSAALELHTSVRDNRKRGTLLSTVRRTVTPVGARLLVQWLSGPSMD 415 Query: 341 STKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRS 400 +I R + FF + + + +LK + D+ R L + GRGE +I + I+ Sbjct: 416 LKEIKNRQRIVKFFKASNDCTDTLIFLLKKTHDLARILQKFSFGRGEALEIIQLARSIQV 475 Query: 401 GINILNLFLKNDLPEE------LRGAVEKLKKLPQSLEKTLSSMLSDDL---PTFKRDG- 450 ++I K + + V +LK Q + L+ + ++L +DG Sbjct: 476 ALDIGYHLQKESQNSDSSSKRIIETLVLQLKFDRQIISDVLTGLNEEELVKSENLTQDGE 535 Query: 451 -------------------GFLRDGADASLDETRSLRDQSKRII------ASLQLKYA-- 483 G L++ ++D ++ L+D KR SLQ Y Sbjct: 536 AAEESAELEETGATELQQEGNLKESWVVNVDYSQRLKDLHKRYAELRDQKCSLQRTYQSY 595 Query: 484 --EETKIKNLKIKHNNNLGYFIEVTSSSASVLKK--DLESKDRFIHRQTMSNLTRFTTLE 539 +E K++ ++ N Y + VT + LK+ +L ++ F Q S FT Sbjct: 596 FIDEWGCKSVLLRRKQNGDYALRVT-GGINHLKRVVELAKQNSFHVLQKSSQTVWFTHES 654 Query: 540 LIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQ 599 L + A E+ IE+S + S ++ +DI + A+LA+E+ Sbjct: 655 WTKLGTELEMAVFKIRKEEINIMNEFKKRFIEKSNEVRAISDILGYLDILSSFAVLARER 714 Query: 600 NYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPN 659 N PI+D S + GRH +VE + +S + F NDC L N+G+LW+++GPN Sbjct: 715 NLVCPIVDQSDRLEIVGGRHLVVEDAISNRSLEKFTENDCQL------NAGELWVVSGPN 768 Query: 660 MGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIE 719 MGGKSTFLRQNA+IV++AQMG +VP A IG+VDK+FSRVGSAD+L + STFMVEM+E Sbjct: 769 MGGKSTFLRQNAVIVLLAQMGCFVPCKSARIGLVDKIFSRVGSADDLYNEMSTFMVEMVE 828 Query: 720 TASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHF-HELTDL 778 T+ IL ATN+S ILDEIGRGT+ +G+SIA+AT+ +L + N CR L ATHF EL D+ Sbjct: 829 TSFILKGATNRSLAILDEIGRGTSGKEGISIAYATLRHLIKNNVCRSLFATHFGQELNDI 888 Query: 779 SKSLKRFHNATLQ---------VSDSNEGIIFL-HKVIPGIADHSYGIQVGKLAGLPNTV 828 L+R L V ++ EG + HK+ PGI + S ++V + AG P Sbjct: 889 ---LQRRSEGDLTEKIQFYKSGVVETLEGDFYYDHKLKPGICETSDALRVAETAGFPGDA 945 Query: 829 ISRAYDIL 836 + A ++L Sbjct: 946 LEIAKEVL 953 >gi|294658914|ref|XP_461255.2| DEHA2F20856p [Debaryomyces hansenii CBS767] gi|202953481|emb|CAG89644.2| DEHA2F20856p [Debaryomyces hansenii] Length = 952 Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 276/907 (30%), Positives = 442/907 (48%), Gaps = 126/907 (13%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ + NP + ++G FYEL+F+ A + LG+ + R K IPM G Sbjct: 74 TPLYASMKILIDANPGCVCLIQVGSFYELYFEQAEIYGPKLGLKVATR-KTNSYSIPMAG 132 Query: 86 VPVHTANHYIQKLIK-IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 P + +++ L++ + +AI +Q PLE +R N+S++ R + R+V+PGTL ++ Sbjct: 133 FPTYQLQKFVKSLVQDLEQNVAIIDQY--PLE--RRINESIIHRKISRIVSPGTLVDETF 188 Query: 145 LSPTDSNYLMAVA----------RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDP 194 L+ +NYL+A+A + ++WIDIS G F + + LI+DI RI+P Sbjct: 189 LNYNQNNYLVAIAFPAKFTKTPADLDLCIGLSWIDISVGEFYVQQTTLGELIADISRINP 248 Query: 195 REII----FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNI-TTVDTF 249 EII F E L+ ++ S + L + + + ++ N+ TT Sbjct: 249 SEIIISKEFQEDNLTSGQWHSCLQDLRKYFIRYHKTVY----KDLKLQFKTNLQTTRKKL 304 Query: 250 GSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS 309 SFS E+ A +SYI PT+ P + + L +D+ R LE+ +G Sbjct: 305 ESFSIKEEMAMNMVLSYINVNLPDTDPTLDLPIQYWNEDRLQMDARTREALELTERSTGG 364 Query: 310 REQ---SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK 366 SLL TI +IT +G RL + + SP+ D +++ +R + + F +N L ++ Sbjct: 365 HTSVVGSLLTTIKRTITPSGTRLLTQWLKSPILDVSELRSRQEFVILFKENNYLKLSLRT 424 Query: 367 ILKSSPDVPRSLSRLKIGRGE-PKDIAVIRDGIRSGINILNLFLKNDLPEELRGA----- 420 L D RS+ RL G G+ + I DG+ + + L+ FLK + +++ Sbjct: 425 QLTQLGDFIRSVQRLVFGTGDIVAHLQYIGDGL-TKLESLHSFLKEEAKKDIFAGKVLDP 483 Query: 421 -VEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQ 479 +++ K EK S++ ++ + G ++ DET + S S Q Sbjct: 484 FLKQFKVSRTVAEKIFSTLNVTEIA----NHGI----SETDQDETEEHDESSTSYSNSNQ 535 Query: 480 LKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLE 539 K K ++ K N+ LG F V +LK+ D + ++ SNL + + Sbjct: 536 ----SIEKYKGIR-KQNSELGMFFSVRKDYDPILKEAHNKLDELMIQE--SNLIKSIRTQ 588 Query: 540 LIDLENRITNATNS-----------------------------------ALLIELESFEI 564 + ++++++T S +LL + ES+ Sbjct: 589 IQEIDSKLTIIKKSQHGRYINVLYISGKQKSIDEAYKLLSVDIRERRKGSLLYKPESWGK 648 Query: 565 LSNAIIEQ----------------SESLDNASQV------IAIIDISIALAILAKEQNYC 602 L I EQ E L+ S++ + +D++ + AILA+E N Sbjct: 649 LQALIDEQIDIIKESEKEIIDALRQEVLNRVSEIRNVSKLVDYLDVTSSFAILAEENNLV 708 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + GRH +VE LK S FI ND + + G LW+++GPNMGG Sbjct: 709 CPKFVKTPQLNIVGGRHIVVESGLKSVSDM-FIPNDTKVG-----SDGNLWVISGPNMGG 762 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST+LRQNALIVI+AQ+GS+VPA+ A IGIVDK+F+R+G++D+L S STFMVEM+ET++ Sbjct: 763 KSTYLRQNALIVILAQIGSFVPATKASIGIVDKIFTRIGASDDLYSDLSTFMVEMVETSN 822 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHF-HELTDL--- 778 IL AT +S I+DEIGRGT+ +GL+IA+AT+ L N+CR L ATHF EL L Sbjct: 823 ILKNATPRSLAIVDEIGRGTSGKEGLAIAYATLLDLLHVNKCRTLFATHFGKELQSLLLA 882 Query: 779 ----SKSLKRFHNATLQ----VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVIS 830 ++ + L D N +I H + PGI+D SY ++V K+AG P + +S Sbjct: 883 NNVKQDKIRYYRTKVLHKDTSSEDGNYSLIIDHALEPGISDRSYALEVAKMAGFPESALS 942 Query: 831 RAYDILK 837 +A + LK Sbjct: 943 KAREALK 949 >gi|302916693|ref|XP_003052157.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256733096|gb|EEU46444.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 1052 Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 275/908 (30%), Positives = 427/908 (47%), Gaps = 130/908 (14%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 + ++ R+G FYEL+F+ A L + + + + G +PM G P + +++ L++ Sbjct: 144 NCVLLTRVGGFYELYFEHADEYGPLLNLKVASKKTNAGP-VPMAGFPFFQLDRFLKILVQ 202 Query: 101 -IGHRIAICEQI-ESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAV-- 156 + +AI E+ SP + K G RR V R++TPGTL ++ + P SNY++A+ Sbjct: 203 DLNRHVAIAEEFPNSPTDKVKSGGLMHDRR-VARIITPGTLIDENFMDPYASNYVLAIDI 261 Query: 157 ARIRTEW--------------------------------------AIAWIDISTGIFKIS 178 R+ + +AW+D+STG F Sbjct: 262 GRVPNQMDGLPGHESASDTASAHPLPSGVGPDVGDAQPCDDAVPLGLAWLDLSTGHFCTQ 321 Query: 179 TSNHDRLISDIMRIDPREIIFSEK---ELSHAEYKSLFETLGNVAVA-QPNVFFDHSISE 234 +N L + + R+ PRE++ ++ + H + L E + A +P+ D +S Sbjct: 322 QTNLASLPAILSRLCPRELVLDQELQSDTDHGIFALLAEDRHIITYAPRPD---DSLLSP 378 Query: 235 SRIADYYNITTVDTFGS-FSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFID 293 + A + + FS E AA A +SY+K + P R++ T+ ID Sbjct: 379 NGWAPMLESALSASEAAAFSPAEVCAAGALLSYVKDRLQGMSMKLQPPLRQENMHTMAID 438 Query: 294 SAARSNLEILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSIN 352 + LEI +T+ G+ SLL I ++T +G RL E +++P T I R D + Sbjct: 439 RNSLRALEIRQTIRDGAFRGSLLHAIRRTVTKSGARLLNEWLSAPSTSLDVITGRQDLVA 498 Query: 353 FFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF---L 409 FI + L + + +L+ S D R + + +GRG+ D+ + + I + +I+ L L Sbjct: 499 RFIADEDLRDSVVLLLRRSYDSQRLVQKFTLGRGDADDLLGLANTIHATRDIVALLDRAL 558 Query: 410 KND--------------LPEELR------------GAVEKLKKLPQSLEKTLSSMLSDD- 442 +D LP+ L+ G V++ + Q E + L++D Sbjct: 559 PSDSNLDCFASLTARISLPQPLKLARRIKEAIDEEGVVQQHEA--QDSEASQMIALAEDI 616 Query: 443 ------------LPTFKR--------------DGGFLRDGADASLDETRSLRDQSKRIIA 476 LP KR D ++ A +L S ++ Sbjct: 617 VNSEGSHDDAAVLPKGKRKRPTSVREYYAEDDDNWIMKPAASPTLKRLHSELTALRQEKV 676 Query: 477 SLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFT 536 +L E +L +K LG+ + A L ++ + R T S F Sbjct: 677 TLNETLRERLGAPSLSLKWTPGLGHIAHIKGKDARNL---VDVRPLSSSRSTRS----FH 729 Query: 537 TLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILA 596 E L R+ E F L ++ L + V+ +DI+ A A LA Sbjct: 730 LTEWTHLGQRLDQVRMQIRAEEQAVFYSLREHVVRNLVKLRRNAAVLDELDIATAFAKLA 789 Query: 597 KEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLT 656 +EQ+ RP ++N+T+ + GRHP VE L +Q + F+ NDC + D G++WL+T Sbjct: 790 REQHLVRPSLNNTTSHTIVGGRHPTVEGGLFEQG-RNFVRNDCLVGSSKD---GRVWLIT 845 Query: 657 GPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVE 716 GPNM GKSTFLRQNALI I+AQ+G YVPASYA IG+VD +FSRVGSADNL +STFMVE Sbjct: 846 GPNMAGKSTFLRQNALITILAQIGCYVPASYAEIGVVDAIFSRVGSADNLYRDQSTFMVE 905 Query: 717 MIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELT 776 M+ETA IL QAT +SFVI+DEIGRGT DG ++++A + +L N+CR L ATHFH + Sbjct: 906 MLETAHILKQATPRSFVIMDEIGRGTTPEDGTAVSYACLHHLATINQCRTLFATHFHGVA 965 Query: 777 DL--SKSLKRFHNATLQV------SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTV 828 DL ++ L T+Q D G ++ HK+ GI S+ ++V +LAGLP Sbjct: 966 DLAAAEGLCSPDGGTVQTYCTDVDEDGQGGFVYNHKLRRGINRQSHALKVARLAGLPGRA 1025 Query: 829 ISRAYDIL 836 I A IL Sbjct: 1026 IDTARRIL 1033 >gi|302655966|ref|XP_003019741.1| hypothetical protein TRV_06202 [Trichophyton verrucosum HKI 0517] gi|291183509|gb|EFE39117.1| hypothetical protein TRV_06202 [Trichophyton verrucosum HKI 0517] Length = 983 Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 268/930 (28%), Positives = 444/930 (47%), Gaps = 161/930 (17%) Query: 40 PDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLI 99 P+ ++ R+G+FYEL+F A + L + L + +G +PM G P + +++ L+ Sbjct: 90 PNCVLLTRVGNFYELYFHQAEEYASLLNLKLAYKKTAVGP-VPMAGFPYFQLDRFLKTLV 148 Query: 100 K-IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMA--- 155 + + +AI E+ + AK + + R V R+VTPGTL +++ + +NYL++ Sbjct: 149 QEMKKNVAISEEFANDAAAKAKAGGLMFDRKVARIVTPGTLIDEKFIDQYQNNYLLSIHV 208 Query: 156 --------------VARIRTEW-------AIAWIDISTGIFKISTSNHDRLISDIMRIDP 194 V R + + ++W+D+STG F ++ L S I RI Sbjct: 209 DPSLNSLQSGTDDQVTRGQLNYLPDSDIIGLSWLDLSTGDFLTQVTSPQMLASAITRIGA 268 Query: 195 REIIFSEK--ELSHAEYKSL----------FETLGNV-AVAQPNVFFDHSISESRIADYY 241 REI+ + E +E +SL F++ N+ +++ N FD IS S +A Sbjct: 269 REILVDQGIGEPLRSELESLVVQEHQPITYFQSPKNIQPLSEWNPSFDSPIS-SEVASM- 326 Query: 242 NITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLE 301 F+ E +A + Y++K + P R+ + ++ ID LE Sbjct: 327 ----------FTPQEVSACQMVLEYVRKQIKETDVRLQPPRRKVAEDSMSIDRNCLRGLE 376 Query: 302 ILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL 360 IL T G + SLL + + T +G RL ER+ I+ +++ L Sbjct: 377 ILETARDGFGKGSLLHAVRRTSTSSGARLLRERL----------------ISLLLEDEDL 420 Query: 361 INPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGA 420 I ++LK S D R + + +GRG P D+ + I + +I ++ + E + A Sbjct: 421 RENIMRLLKRSYDTQRLVQKFSLGRGLPDDLICLSRAIDASGDIKSILEQKLTAVESKAA 480 Query: 421 VE-------KLKKL--------PQSLEKTLSSMLSDDLPTFKR----DGG---------- 451 E ++ L P L +++ + +++ K+ D Sbjct: 481 AEGDISSSKSIRPLLHRFNLHGPGELSRSIQDSIDEEMLLQKQRVEEDAAAGDSALAHDV 540 Query: 452 FLRDGADASL---------------------------------DETRSLRDQSKRIIASL 478 L +G+DA L D ++SLR+ + +L Sbjct: 541 LLSEGSDADLNAMPKKVKDSKGDGPKGPSGPDSPSDTAWIMRPDASKSLRN----LHDAL 596 Query: 479 QLKYAEETKI----------KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQT 528 + Y+E+ K+ L +K LG+ + + + A +KK LE D + R Sbjct: 597 ENLYSEKAKLTKRLQQTLDTAQLSLKWTPGLGHIVHMKGTKA--MKKSLE--DLGVTRTV 652 Query: 529 MSNLT--RFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAII 586 S+ + F L ++ + + E F+ L + +I L + V+ + Sbjct: 653 SSSKSTRSFYLPSWTQLGAKLESMKQQIRVEEQHIFKRLRHTVILNLVKLRRNASVLDEL 712 Query: 587 DISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPND 646 D++ + A LAKEQ RPI++N + + GRHP V+ +++Q +PF++NDC + Sbjct: 713 DVACSFAALAKEQGMVRPIVNNGLSHKIFGGRHPTVKLGVEEQG-RPFVSNDCFVG---- 767 Query: 647 KNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNL 706 ++ L+TGPNM GKSTFLRQNALI I+AQ+GSYVPA YA IG+VDK+FSR+G+AD+L Sbjct: 768 -GKERILLITGPNMAGKSTFLRQNALITILAQVGSYVPAEYAEIGLVDKIFSRIGAADDL 826 Query: 707 ASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRG 766 +STFMVEM+ETASIL AT +SFVI+DE+GRGT DG ++ +A + +LH N+ R Sbjct: 827 FRDQSTFMVEMLETASILKHATPRSFVIMDEVGRGTTPEDGTAVGFACLHHLHNENKART 886 Query: 767 LLATHFHELTDLSKSLKRFHNATLQVSDSNEGII-FLHKVIPGIADHSYGIQVGKLAGLP 825 L ATHFH L D++ + + + + G F+HK+ PG+ S+ ++V LAGLP Sbjct: 887 LFATHFHALADMTADFEHVGRYCTDLKEDSSGAFSFVHKLRPGVNRQSHALKVAHLAGLP 946 Query: 826 NTVISRAYDILKTF----EKLYHHNQKDMR 851 +VI A D++K +L H ++D R Sbjct: 947 QSVIDVAEDVIKKMPAMGAELGHQVEEDCR 976 >gi|171323003|ref|ZP_02911668.1| DNA mismatch repair protein MutS [Burkholderia ambifaria MEX-5] gi|171091615|gb|EDT37200.1| DNA mismatch repair protein MutS [Burkholderia ambifaria MEX-5] Length = 625 Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 213/622 (34%), Positives = 321/622 (51%), Gaps = 38/622 (6%) Query: 292 IDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSI 351 +D A R NLE+ TL G+ +L +D T G RL + P S +R +I Sbjct: 15 LDPATRRNLELTETLRGTESPTLYSLLDTCCTTMGSRLLRHWLHHPPRASVAAQSRQQAI 74 Query: 352 NFFIQNPI--LINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRD------GIRSGIN 403 + P ++ ++ L+ DV R RL + P+D++ +RD +R I+ Sbjct: 75 GALLDAPADASLDALRSALRQIADVERITGRLALLSARPRDLSSLRDTFAALPALRERIS 134 Query: 404 ILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDE 463 + D + A+ P L+S ++ + RDGG + G DA LDE Sbjct: 135 AI--VANADALTRVDAALAP----PAECLDLLTSAIAPEPAAMVRDGGVIARGYDAELDE 188 Query: 464 TRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRF 523 R + + + + L+ + T I NL++++N G++IEVT + D + Sbjct: 189 LRDISENCGQFLIDLEARERTRTGIANLRVEYNKVHGFYIEVTRGQTDKVPDD------Y 242 Query: 524 IHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVI 583 RQT+ N R+ T EL E++ +A AL E ++ + A++ + + Sbjct: 243 RRRQTLKNAERYITPELKTFEDKALSAQERALARERALYDGVLQALLPFIPECQRVASAL 302 Query: 584 AIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSC 643 A +D+ A A A+ ++ P + ++ GRHP+VE ++Q FIANDC S Sbjct: 303 AELDVLAAFAERARTLDWVAPAFTDEIGIEIEQGRHPVVEAQVEQ-----FIANDCRFSV 357 Query: 644 PNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSA 703 KL L+TGPNMGGKSTF+RQ ALI +MA +GSYVPA A G +D++F+R+G+A Sbjct: 358 ER-----KLLLITGPNMGGKSTFMRQTALIALMAYIGSYVPAKSACFGPIDRIFTRIGAA 412 Query: 704 DNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNR 763 D+LA GRSTFMVEM E A+ILN AT QS V++DEIGRGT+T DGL++AWA +L N Sbjct: 413 DDLAGGRSTFMVEMTEAAAILNDATPQSLVLMDEIGRGTSTFDGLALAWAIARHLLAQNG 472 Query: 764 CRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAG 823 C L ATH+ ELT L + N L + GI+FLH V G A+ SYG+QV +LAG Sbjct: 473 CYTLFATHYFELTQLPAEFPQAANVHLSAVEHGHGIVFLHAVNEGPANQSYGLQVAQLAG 532 Query: 824 LPNTVISRAYDILKTFEK---LYHHNQKDMRLYYP----EIQTKESKNNLSKNDKLFVEK 876 +P VI A L E+ H Q D+ P E++ ++ +S +EK Sbjct: 533 VPAPVIRAARKHLAYLEQQSATQHTPQLDLFSAPPAAADELECADAP-AVSAIPHPALEK 591 Query: 877 IKCLNLDEMSPLTALKTLYAVK 898 ++ ++ D++ P AL LY ++ Sbjct: 592 LRDIDPDDLKPREALDLLYELR 613 >gi|302306710|ref|NP_983084.2| ABR137Wp [Ashbya gossypii ATCC 10895] gi|299788648|gb|AAS50908.2| ABR137Wp [Ashbya gossypii ATCC 10895] Length = 955 Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 279/935 (29%), Positives = 435/935 (46%), Gaps = 144/935 (15%) Query: 3 KEFSSPQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLA 62 K+ ++YS L +L+ MM +Y PD ++ +MG FYEL+++ A Sbjct: 60 KKIDRGNRMYSNS--LPPSLQFVRDMMDKY-------PDYVLLTQMGSFYELYYEHAEKY 110 Query: 63 SRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK-IGHRIAICEQIESPLEAKKRG 121 + L ITLT+R GK +P G P+ + +++ L+K G+ +A+ EQ A Sbjct: 111 APKLNITLTRREYSHGK-VPFAGFPLEQLSRHLKVLVKEYGYSVAVVEQFRKDDIADNER 169 Query: 122 NKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAV----------ARIRTEWAIAWIDIS 171 K R V R+VTPGT ++ + ++ +L++V + + ++W DIS Sbjct: 170 YK--FNRRVTRVVTPGTFIDEAFENLQENQFLLSVEFPDRCMEKLSDPSIKVGLSWCDIS 227 Query: 172 TGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHA-EYKSLFETLGNVAVAQPNVFFDH 230 TG + LIS I +I PREI+ SE L++ + + + L V F + Sbjct: 228 TGELFVQQVQLKGLISAITKIKPREILLSEDLLAYQIQNGNWYPEL----VEFKKYFIKY 283 Query: 231 SISESRIADYYNITTVDTFG--------------SFSQVEKTAAAAAISYIKKTQMVNKP 276 + SR + + FG S SQ E A A ++YI++ Sbjct: 284 YKTPSRHRTMETFSHLFAFGANNASKRNLDIVLHSLSQKETAALRANLTYIEQHLPEMLA 343 Query: 277 TIGYPEREDIQSTLFIDSAARSNLEILRTLSGS-REQSLLKTIDYSITGAGGRLFAERIA 335 + +P+R ++ IDS + LE+ T + + SLL I ++T +G RL + ++ Sbjct: 344 NLAFPKRSLTTDSMQIDSRTSAALELHNTFRDNLKRGSLLSAIRRTVTPSGTRLLTQWLS 403 Query: 336 SPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEP------- 388 +P +I R + + F+QNP + + + LK++ D+ R L + RG+ Sbjct: 404 APSMHLDEIKQRQNLVRLFMQNPFVTDNLIAQLKATADMTRILQKFSFKRGDAAHLLQMA 463 Query: 389 -----------------------KDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLK 425 KD+A + D + S + + + +E+ A+ LK Sbjct: 464 QSLQQCSAIGDTIHSFTTEGPISKDLAAVLDKLSSALR-----FEGGIVQEILAAI-NLK 517 Query: 426 KL-----PQSL-----EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRII 475 K PQ + E LS S++ F G L L + S D+ Sbjct: 518 KFSEFEGPQLVTAPEDEPALSLEDSNETTEFPVHPGMLNPEVSPRLGDLYSKYDKLLTRQ 577 Query: 476 ASLQLKY----AEETKIKNLKIKHNN-NLGYFIEVTSSSASVLKKDL----------ESK 520 L +Y K + + ++N + GY + +T S LKK L +S+ Sbjct: 578 QQLLQEYRDFFVHTHKARTITTRNNKRDTGYALYLTGGGNS-LKKILRNVNEGAEVADSR 636 Query: 521 DRFIHRQT------------MSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNA 568 R I + TTLEL+D E I + L Sbjct: 637 FRIIRSSANTCWLSHEPWNELGKAMHLTTLELLDEERYI--------------LDNLQRK 682 Query: 569 IIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQ 628 II S + +Q + +D+ + AILA E+N P +D S+ + GRH +VE L+ Sbjct: 683 IITYSTEIRAIAQTVDYLDVLSSFAILASEKNLVCPQVDESSALEIVGGRHLVVEDGLQS 742 Query: 629 QSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYA 688 ++ F ANDC L +G +W++TGPNMGGKSTFLRQ A+IVI+AQ+G YVP + A Sbjct: 743 RAPGNFTANDCSL------QNGDIWIVTGPNMGGKSTFLRQTAIIVILAQIGCYVPCASA 796 Query: 689 HIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGL 748 HIG+VDK+FSRVGSAD+L + STFMVEM+ET+ +L AT +S ILDEIGRGT DG+ Sbjct: 797 HIGLVDKIFSRVGSADDLYNDMSTFMVEMLETSFMLKGATKRSLAILDEIGRGTNAEDGV 856 Query: 749 SIAWATIEYLHETNRCRGLLATHF-HELTDLSK------SLKRFHNATLQVSDSNEGIIF 801 IA+ T+ ++ NRCR L A+HF EL++L + + KR H V + N + Sbjct: 857 GIAYTTLHHMLTKNRCRALFASHFGRELSELVEQHLPPGARKRVHFYRTNVREHNGRSFY 916 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 HK+ PGI S I+V ++AG P + A +L Sbjct: 917 DHKITPGICLSSDAIRVAQMAGFPQEALDVARRVL 951 >gi|281206806|gb|EFA80990.1| Muts-like protein [Polysphondylium pallidum PN500] Length = 1231 Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 278/926 (30%), Positives = 461/926 (49%), Gaps = 114/926 (12%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP RQY +IKS N D +VF++ G FYEL+ DDA L + + +T R ++ M G Sbjct: 353 TPFERQYWDIKSKNYDKIVFFKKGKFYELYEDDADLGHQLFDLKMTDR-----VNMRMVG 407 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNK--------SLVRRNVVRLVTPG 137 VP + + +K ++ G+RI +Q+ES L KR N+ ++++R V ++T G Sbjct: 408 VPEKSFQQWAKKFLEAGYRITKVDQVESRLAMDKRQNQKGASTSKETIIQREVTSILTIG 467 Query: 138 TLTEDQLLSPTDSNYLMAVAR--IRTEWAIAWIDISTGIFKIST----SNHDRLISDIMR 191 TL +D LL + SNYLM++ + E I ++D S G+F ++ N L + +++ Sbjct: 468 TLVDDSLLLDSTSNYLMSIKEDDYKQELGICFLDSSVGLFYLTEFKDDENRSHLETLLLQ 527 Query: 192 IDPREIIFSEKELSHAEYKSLFETLGN----VAVAQPNVFFDHSISESRIADYYNITTVD 247 P+EI++ + +S + L + QP F+ + ++ + + Sbjct: 528 TMPKEILYDKSSISQTTLNVIKRVLSREKYILTTRQPTEFWSTDFTLGKLEEMQKADDLK 587 Query: 248 -TFGSFSQVEKT----AAAAAISYIKKTQMVNKPT----IGYPEREDIQSTLFIDSAARS 298 G +VE + A Y++ +M ++ T D S+L +D + Sbjct: 588 KVLGDNIEVEHSLLGYALGGCCCYLEDIKMADQVTKQARFEMYNTLDGTSSLVLDGQSLV 647 Query: 299 NLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQN 357 NLEI T GS SL K +D T G RL + + PL+ KIN RLD++ + +N Sbjct: 648 NLEIFANTTDGSTNGSLFKVLDRCSTPFGKRLLKQWVCRPLSSREKINERLDAVQYLGEN 707 Query: 358 PILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEE- 416 L++ + +L PD+ R LSR+K + D+ + + + L D +E Sbjct: 708 QELMSKLSTMLTRVPDLERMLSRIKACSSKIGDLVTVLNVLERCQQCLEEL---DCVDEI 764 Query: 417 ----LRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFL--RDGADASLDETRS---- 466 L+ V K P +L+ +SSM S +F+ + L G DE + Sbjct: 765 NSPTLQYHVTVGKGFP-NLKTLISSMRS----SFEINVVQLIPSKGLFTEYDECQERIKA 819 Query: 467 --------LRDQSKRIIASLQLKYAEETK-IKNLKI------KHNNNLGYFI---EVTSS 508 L+DQ K++ +S + Y K I L+I KH +G +I E+ S Sbjct: 820 IEQELEQHLKDQ-KKLFSSNSIAYKSIGKEIYQLEIPIDVYNKHKAKMGDYIYKSELKSK 878 Query: 509 SASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNA 568 S +E K + + + S F+ L+ + +E RI E F + ++A Sbjct: 879 SKRYWTPFIEKKVKQLAEENDS----FSALQKV-VEVRIQ-----------EQFNVNASA 922 Query: 569 IIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP--IIDNSTNFIVKDGRHPIVEKTL 626 + + SL ++++ +S I CRP +I + K+ RHP + TL Sbjct: 923 WCQATASLAQIDCILSLAKVSHLAGITT-----CRPEIVISDHALLDAKEMRHPAI--TL 975 Query: 627 KQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPAS 686 K FI ND L D+ G + +LTGPNMGGKST LRQ ++VIMAQ+G YVPA+ Sbjct: 976 K--GGDDFIPNDITLGI--DQQPG-VMVLTGPNMGGKSTLLRQCCILVIMAQLGCYVPAA 1030 Query: 687 YAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLD 746 + IVD++F+R+G+ DN+ +G+STFM+E+ ET+++L AT +S VI+DE+GRGT+T D Sbjct: 1031 SCRLSIVDRIFTRLGANDNIMAGQSTFMLELQETSNVLKYATKRSLVIMDELGRGTSTFD 1090 Query: 747 GLSIAWATIEYLHETNRCRGLLATHFHELT---DLSKSLKRFHNATLQVSDSNEGIIFLH 803 G SIA++ ++Y+ C + ATH+ L ++K++++ H + V D + +IFL+ Sbjct: 1091 GYSIAFSVLDYISNKINCMCIFATHYQSLAHEPKVAKAIQKSH-MSCYVDDVEKKVIFLY 1149 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK-----LYHHNQKDMRLYYPEIQ 858 K+ G+ SYG+ VG +AG+P+ VI++A + + FEK Y H + EI Sbjct: 1150 KLTEGVCPASYGMLVGGMAGIPSEVIAKAEEKAEQFEKESTVSTYVHGTTSTK----EIV 1205 Query: 859 TKESKNNLSKNDKLFVEKIKCLNLDE 884 K +++ SK+ K +E K L++++ Sbjct: 1206 KKITQSVGSKDYKKLLELWKTLDINK 1231 >gi|322706979|gb|EFY98558.1| MutS2 protein [Metarhizium anisopliae ARSEF 23] Length = 993 Score = 345 bits (884), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 278/927 (29%), Positives = 435/927 (46%), Gaps = 113/927 (12%) Query: 4 EFSSPQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLAS 63 EF PQ+ EEN S ++ Q + ++ R+G FYEL+F+ A + Sbjct: 70 EFKPPQE--------EENEPSYPTVVLQARRNMRKFDNCVLLTRVGSFYELYFEHADEYA 121 Query: 64 RCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK-IGHRIAICEQIESPLEAKKRGN 122 L + L + + G +PM G P + +++ L++ + +AI E+ + K + Sbjct: 122 PLLNLKLASKKTNAGP-VPMAGFPFFQLDRFLKILVQDLNRHVAIAEEFPNDAADKVKSG 180 Query: 123 KSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVA------------------RIRTE-- 162 + R V R+VTPGTL ++ + P +NY++A+ IR Sbjct: 181 GLMHDRRVARIVTPGTLIDENFIDPYANNYVLAIHFADSKETPELKSAMVEDNGIRVSPP 240 Query: 163 -----WAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLG 217 +AW+D+STG F ++ L S + RI PRE++ E S ++ +F L Sbjct: 241 ASPMLLGLAWLDLSTGHFFTQSAELASLPSILSRIGPREVVLDENIESQKDH-DIFSIL- 298 Query: 218 NVAVAQPNVFFDHSISESRIADYYNI----TTVDTFGSFSQVEKTAAAAAISYIKKTQMV 273 A + + + + I D+ + +F+ E A ++Y+K Sbjct: 299 --AEDRHLITYSPKGGLTDIGDWTPLLESPVPESARKTFTSEEVLAGGLVLNYVKGRLQG 356 Query: 274 NKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSITGAGGRLFAE 332 + P R + + ID + LEI +T+ G SLL I ++T +G RL E Sbjct: 357 MTVRLLPPIRHESMQIMNIDKNSLRALEIKKTIRDGLFRGSLLHAIRRTVTKSGARLLNE 416 Query: 333 RIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIA 392 ++SP T INTR + + FI L + I +L+ S D R + + +GRG+ D+ Sbjct: 417 WLSSPSTSLDVINTRQNLVARFIAAEHLRDSIIMLLRRSQDSQRLVQKFSLGRGDADDLL 476 Query: 393 VIRDGIRSGINILNLFLKNDLP-------EELRGAVEKLK-KLPQSLEKTLSSMLSDDLP 444 + IR+ +I+ L + E L G + ++ P L + + + ++ Sbjct: 477 ALAHTIRATEDIVILLQEAAASGFDAAQNECLSGLLSRIDLTQPLKLARKIKGAIDEEGI 536 Query: 445 TFKRDG---------GFLRD--GADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 + + +D + S ++ SL K+ S++ YAE+ +K Sbjct: 537 VHQHEVEDSEASQMLALAQDIVATEGSQEDASSLHKSKKKRPTSIKEYYAEDNDAWIMKP 596 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLT-RFTTL-------------- 538 + NL + + +S+L + +E D + S+LT R++T Sbjct: 597 GASINLK---RLHAQLSSLLDEKIELSDSLREKLGASSLTLRWSTSLGHIAHIKGKDTKN 653 Query: 539 -------------------ELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNA 579 E L R+ A E + F+ L ++ L Sbjct: 654 LTNIRALSSSRSTTSFRLSEWTTLGQRLDQARFHIRREEQKVFQSLREQVVRNLVKLRGN 713 Query: 580 SQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDC 639 + V+ +DI + A LA EQN RP ++NST + GRHP VE L +Q + F+ NDC Sbjct: 714 AAVLDELDILTSFARLAVEQNLVRPKLNNSTTHTIIGGRHPTVEGGLVEQG-RSFVRNDC 772 Query: 640 DLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSR 699 + D G LWL+TGPNM GKSTFLRQNALI I+AQ+G YVP SYA +GIVD +FSR Sbjct: 773 LVGSQPD---GLLWLITGPNMAGKSTFLRQNALITILAQIGCYVPTSYAELGIVDAIFSR 829 Query: 700 VGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLH 759 VGSADNL +STFMVEM+ETA IL QAT +SFVI+DEIGRGT DG ++++A + +L Sbjct: 830 VGSADNLFRDQSTFMVEMLETAQILKQATPRSFVIMDEIGRGTTPEDGTAVSYACLHHLV 889 Query: 760 ETNRCRGLLATHFHELTDLSKS-----LKRFHNATLQVSDSNE----GIIFLHKVIPGIA 810 NRCR L ATHFH + DL+ S + L +D E G +++HK+ GI Sbjct: 890 TVNRCRTLFATHFHGVADLAASDGLCTVDGGGPVQLYCTDVEEDDQGGFVYVHKLRKGIN 949 Query: 811 DHSYGIQVGKLAGLPNTVISRAYDILK 837 S+ ++V +LAGLP + A IL+ Sbjct: 950 RRSHALKVARLAGLPERAMDTATQILE 976 >gi|293377536|ref|ZP_06623731.1| DNA mismatch repair protein MutS [Enterococcus faecium PC4.1] gi|292643851|gb|EFF61966.1| DNA mismatch repair protein MutS [Enterococcus faecium PC4.1] Length = 670 Score = 344 bits (882), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 219/676 (32%), Positives = 358/676 (52%), Gaps = 49/676 (7%) Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQS 313 +EK A ++Y+ TQ + I L +D ++ NLE+ +++ +G + + Sbjct: 9 LEKEATGKLLTYLAVTQKRSLAHIQKAVEYQPDHFLKMDYYSKFNLELSQSIRTGKKHGT 68 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL +D + T GGRL + + PL + +I R + + + + +Q L D Sbjct: 69 LLWLLDETKTAMGGRLLKQWLDRPLIQAKQIKARQEMVASLLDSYFERIDLQSALTKVYD 128 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSL 431 + R R+ G +D+ ++ + I L + + L ++ + L Q + Sbjct: 129 LERLAGRVAFGNVNGRDLIQLKTSLEQVPMIRGLIEGIDQGQWQSLLSEMQPMDHLVQLI 188 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 ++ + DD P +G ++DG + LD RS K+ +A L+ K +ET IKNL Sbjct: 189 DQAIQ----DDPPLQITEGNIIKDGFNEQLDTYRSAMRNGKKWLAELEAKERQETGIKNL 244 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 KI N GY+IE+T A++ +LE +R +QT++N RF T EL +LE +I A Sbjct: 245 KIGFNRVFGYYIEITK--ANLGNAELEKYER---KQTLANAERFITPELKELETQILEAE 299 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP-IIDNST 610 ++ +E + F + + + + L ++ I+ +D+ + A +++ Y RP ++ + Sbjct: 300 EKSVDLEYQLFLAVREEVKKAIQPLQVLAKAISAVDVLQSFATISERYQYVRPELVSDKH 359 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 ++KDGRHP+VEK L Q +I N +++ + L+TGPNM GKST++RQ Sbjct: 360 QLLIKDGRHPVVEKVLGHQE---YIPNSVEMA-----EDEMILLITGPNMSGKSTYMRQL 411 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 AL V+MAQMG +VPA A + I D++F+R+G++D+L +G+STFMVEM+E L AT Sbjct: 412 ALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLIAGQSTFMVEMMEANQALRYATPN 471 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S ++ DE+GRGTAT DG+++A A IEY+H + + L +TH+HELT L K L + N + Sbjct: 472 SLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTLFSTHYHELTVLEKELPQLKNVHV 531 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL--YHH--- 845 + + ++FLHK++ G AD SYGI V K+AGLP ++ RA DIL T E HH Sbjct: 532 GAVEKDGEVVFLHKMMDGPADKSYGIHVAKIAGLPANLLERAADILHTLENGDNGHHTVP 591 Query: 846 ---NQKDMRLYYPEIQTKESKNN--------------------LSKNDKLFVEKIKCLNL 882 +K +I+ K N LS+N+ +E +K +NL Sbjct: 592 AEIEEKTKTAKQEQIKPPAEKVNQDPIQDSVKEETQQLSLFGELSENETEVIESLKQINL 651 Query: 883 DEMSPLTALKTLYAVK 898 EM+P+ AL TLY ++ Sbjct: 652 LEMTPMDALNTLYELQ 667 >gi|326472065|gb|EGD96074.1| DNA mismatch repair protein Msh1 [Trichophyton tonsurans CBS 112818] Length = 908 Score = 340 bits (873), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 274/912 (30%), Positives = 438/912 (48%), Gaps = 137/912 (15%) Query: 54 LFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK-IGHRIAICEQIE 112 L+F A + L + L + +G +PM G P + +++ L++ + +AI E+ Sbjct: 13 LYFHQAEEYASLLNLKLAYKKTAVGP-VPMAGFPYFQLDRFLKTLVQEMKKNVAISEEFA 71 Query: 113 SPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMA----------------- 155 + AK + + R V R+VTPGTL +++ + +NYL++ Sbjct: 72 NDAAAKAKAGGLMFDRKVARIVTPGTLIDEKFIDQYQNNYLLSIHVDPSLKSLQSSTDDQ 131 Query: 156 VARIRTEW-------AIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK--ELSH 206 VAR + ++W+D+STG F ++ L S I RI REI+ + E Sbjct: 132 VARGQLNCLPDSDIIGLSWLDLSTGDFLTQVTSPQMLASAITRIGAREILVDQSMGEPLR 191 Query: 207 AEYKSL----------FETLGNV-AVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQV 255 +E ++L F++ N+ +++ N FD IS S +A F Sbjct: 192 SELEALVVQEHQPITYFQSPKNIQPLSEWNPCFDSPIS-SEVASM-----------FKPQ 239 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSL 314 E +A + Y++K + P R+ + ++ ID LEIL T G + SL Sbjct: 240 EISACQMVLEYVRKQIKETDVRLQPPRRKVAEDSMSIDRNCLRGLEILETARDGFGKGSL 299 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 L + + T +G RL ER+ +P IN RLD ++ +++ L I ++LK S D Sbjct: 300 LHAVRRTSTSSGARLLRERLTAPSASLGVINERLDLVSLLLEDEDLRENITRLLKRSYDT 359 Query: 375 PRSLSRLKIGRGEPKDI---------------------------AVIRDGIRSGINILNL 407 R + + +GRG P D+ AV + S +I L Sbjct: 360 QRLVQKFSLGRGLPDDLICLSRAIDASGDIKSILEQKLTAVESRAVAEGDVSSSKSIRPL 419 Query: 408 FLKNDL--PEELRGAV-----EKLKKLPQSLEKT-------------LSSMLSDDLPTF- 446 + +L P EL ++ E++ Q +E+ LS DL Sbjct: 420 LHRFNLHGPGELSRSIQDSIDEEMLLQKQRVEEDAAAGASALAHDVLLSEGTDSDLNAMP 479 Query: 447 ------KRDGGFLRDGADASLDETRSLRDQSKRIIA----SLQLKYAEETKI-------- 488 K DG G D+ D +R + +I+ +L+ Y+E+ ++ Sbjct: 480 KKVKDSKGDGPKGPSGPDSPSDTAWIMRPDASKILRNLHDALESLYSEKARLTKRLQQTL 539 Query: 489 --KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHR-QTMSNLTR-FTTLELIDLE 544 L +K LG+ + + + A +KK LE D + R + S TR F L Sbjct: 540 DTAQLSLKWTPGLGHIVHMKGTKA--MKKSLE--DLGVTRIVSSSKSTRSFYLPSWTQLG 595 Query: 545 NRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP 604 ++ + + E F+ L + +I L + V+ +D++ + A LAKEQ RP Sbjct: 596 AKLESMKQQIRVEEQHIFKRLRHTVILNLVKLRRNASVLDELDVACSFAALAKEQGMVRP 655 Query: 605 IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 I++N + + GRHP V+ +++Q +PF++NDC + DK ++ L+TGPNM GKS Sbjct: 656 IVNNGLSHKIIGGRHPTVKLGVEEQG-RPFVSNDCFV---GDKE--RILLITGPNMAGKS 709 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 TFLRQNALI I+AQ+GSYVPA YA IG+VDK+FSR+G+AD+L +STFMVEM+ETASIL Sbjct: 710 TFLRQNALITILAQVGSYVPAEYAEIGLVDKIFSRIGAADDLFRDQSTFMVEMLETASIL 769 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR 784 AT +SFVI+DE+GRGT DG ++ +A + +LH N+ R L ATHFH L D++ + Sbjct: 770 KHATPRSFVIMDEVGRGTTPEDGTAVGFACLHHLHNENKARTLFATHFHALADMTADFEY 829 Query: 785 FHNATLQV-SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE--- 840 + D + G F+HK+ PG+ S+ ++V LAGLP +VI A +++ Sbjct: 830 VGRYCTDLKEDPSGGFSFVHKLRPGVNRQSHALKVAHLAGLPQSVIDVAKVVIQKMPAME 889 Query: 841 -KLYHHNQKDMR 851 +L H ++D R Sbjct: 890 TELGHQVEEDCR 901 >gi|58696909|ref|ZP_00372413.1| DNA mismatch repair protein MutS [Wolbachia endosymbiont of Drosophila simulans] gi|58536865|gb|EAL60067.1| DNA mismatch repair protein MutS [Wolbachia endosymbiont of Drosophila simulans] Length = 498 Score = 340 bits (872), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 184/499 (36%), Positives = 293/499 (58%), Gaps = 37/499 (7%) Query: 29 MRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPV 88 M QY+ +K+ D L+FYR+GDFYELFFDDA+ A++ L I LTKRG G+DIPMCGVP Sbjct: 1 MEQYLNLKAQYKDHLLFYRLGDFYELFFDDAIKAAKLLNIVLTKRGNSCGQDIPMCGVPA 60 Query: 89 HTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPT 148 H++ Y+ KLI +G ++AIC+Q+E+ EAKKRG KS+V+R+VVR+VTPGT+ ED LL Sbjct: 61 HSSESYLHKLIDLGFKVAICDQLETADEAKKRGYKSIVKRDVVRVVTPGTIIEDSLLEDK 120 Query: 149 DSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHAE 208 +NYL ++ E+AI+W+++STG F + ++ L SD++RI PRE++ SEK + Sbjct: 121 SNNYLASIVEQNDEYAISWLELSTGKFFHTLTSLKALDSDLLRISPRELLISEKFTEDEK 180 Query: 209 YKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIK 268 +S+ + FF++S S + ++Y I + + G+FS+VE A A + Y++ Sbjct: 181 IRSVLKNYKISITQHAQSFFEYSKSHRTLCEFYKIRELGSIGNFSKVEIMACGALLEYVR 240 Query: 269 KTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGR 328 TQ + P + +P+ Q+ + ID++AR NLE+ T G ++ SL+ ID+++T +GGR Sbjct: 241 VTQRGSIPRLEFPKTYKQQNFMLIDASARRNLELFSTQFGEKKGSLISVIDHTVTASGGR 300 Query: 329 LFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEP 388 L + +ASPL S IN RL + FF+ N I++IL + PD+ RSLSRL +GRG P Sbjct: 301 LLKQMLASPLACSKAINLRLSTAQFFVNNHEPRRKIREILSNIPDIERSLSRLILGRGSP 360 Query: 389 KDIAVIRDGIRSGINILNLFL----------KNDLPEELRGAVEKLKKLPQSLEKTLSS- 437 KD+ +++ G+ + L+ FL K+++ ++ +K P S + +SS Sbjct: 361 KDMNLLKIGLGKTLE-LSEFLSTLHNYCLSEKSEINSQMSFQCLTKEKEPVSTTQVISSD 419 Query: 438 ------------------------MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKR 473 +L ++L + K +GGF+ ++ L E + + S + Sbjct: 420 ESELSTIHKSLGNHKDLFELLNSAILDNNLSSVK-EGGFIHSKYNSELSELSYILNNSNK 478 Query: 474 IIASLQLKYAEETKIKNLK 492 ++ L+ Y + T I LK Sbjct: 479 LVTKLRESYRDLTGIAALK 497 >gi|329736258|gb|EGG72530.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis VCU028] Length = 602 Score = 340 bits (872), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 219/606 (36%), Positives = 328/606 (54%), Gaps = 43/606 (7%) Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 +L +D + T G R + I PL + +IN RL+ + F+ I + ++ L D Sbjct: 1 MLWLMDETKTPMGARRLKQWIDRPLINKQQINDRLNIVEEFMDRFIERDTLRNHLNQVYD 60 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 + R + R+ G +D+ ++ I +I L N+L + ++L+ L L+ Sbjct: 61 IERLVGRVSYGNVNARDLIQLKHSISEIPHIKALL--NELGAQTTTQFKELEPLDDLLQ- 117 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 L L ++ P +DGG ++G +A LDE K +A LQ K E T IK+LKI Sbjct: 118 ILEESLVEEPPISIKDGGLFKNGFNAQLDEYLEASKNGKTWLAELQAKERERTGIKSLKI 177 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 N GYFIE+T ++ + + + +R +QT+SN RF T EL + E+ I A + Sbjct: 178 SFNKVFGYFIEITRANLNNFQPEAFGYNR---KQTLSNAERFITDELKEKEDIILGAEDK 234 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 A+ +E E F L I +E L +++I+ +D + A +A++ NY +P + Sbjct: 235 AVELEYELFVKLREHIKTYTERLQKQAKIISELDCLQSFAEIAQKYNYVKPTFSDDKVLH 294 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +++ RHP+VE+ + ++ NDC L + ++L+TGPNM GKST++RQ A+I Sbjct: 295 LENSRHPVVERVM---DYNDYVPNDCHLD-----DETFIYLITGPNMSGKSTYMRQVAII 346 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 IMAQMG+YVP A + I D++F+R+G+AD+L SG+STFMVEM+E L AT S + Sbjct: 347 SIMAQMGAYVPCDSATLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTYATENSLI 406 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 I DEIGRGT+T DGL++A A IEY+ +T+ + L +TH+HELT L + LK N + + Sbjct: 407 IFDEIGRGTSTYDGLALAQAMIEYVAQTSHAKTLFSTHYHELTSLDQMLKCLKNVHVAAN 466 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE-----KLYHHNQK 848 + +IFLHKV G D SYGIQV KLA LPN VI RA IL FE +L H N Sbjct: 467 EYQGELIFLHKVKDGAVDDSYGIQVAKLADLPNEVIDRAQVILNAFEQKPSYQLSHEN-T 525 Query: 849 DMRLYYPE-------------IQTKESKNNLSK---------NDKLFVE-KIKCLNLDEM 885 D + P I+T S +N + N + VE +I+ LNL M Sbjct: 526 DNQQTVPSYNDFGRTEEEQSVIETHTSNHNYEQATFDLFDGYNQQSEVECQIRELNLSNM 585 Query: 886 SPLTAL 891 +PL AL Sbjct: 586 TPLEAL 591 >gi|190344536|gb|EDK36224.2| hypothetical protein PGUG_00322 [Meyerozyma guilliermondii ATCC 6260] Length = 925 Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 262/875 (29%), Positives = 428/875 (48%), Gaps = 72/875 (8%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ +I N + ++G FYE++FD A LGI + R K IPM G Sbjct: 72 TPLYASINKIIDANKGCVCLVQVGSFYEIYFDQAQEYGPKLGIKVASR-KTNNCIIPMAG 130 Query: 86 VPVHTANHYIQKLIK-IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 P + +++ LI+ +AI +Q P+E KR +++ R V R+VTPGTL ++ Sbjct: 131 FPTYQLQKFVKMLIQDYNVNVAIIDQY--PME--KRTMDAIIHRKVSRIVTPGTLVDETF 186 Query: 145 LSPTDSNYLMAV----------ARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDP 194 L+ +NYL A+ A E ++W+D+S G F + + + ++SDI RI+P Sbjct: 187 LNYNQNNYLAAIHLPPGCTKTIADPAMEVGLSWVDVSVGEFYVQRTTLEDVVSDIFRINP 246 Query: 195 REIIFSEK-----ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTF 249 EII ++ L+ Y L E V+ D + + Y T Sbjct: 247 SEIIIPKEFQDLGLLTGNWYTPLSELRRYFLRYHQTVYKDLKL---QFTSSYQATR-KAI 302 Query: 250 GSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEIL-RTLSG 308 S S E+ A +SYI P + P + + + +D R LE+ R+ +G Sbjct: 303 ESLSVREEAAMNMILSYINVNIPEANPALDIPTQYWNEKYVRMDPRTREALELTERSTAG 362 Query: 309 SRE--QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK 366 R +L+ TI ++T +G R+ ++ I SP+ D +N R D + F + +L ++ Sbjct: 363 RRSVVGTLVSTIRKTVTPSGTRMLSQWINSPILDIETLNYRYDFVEAFRADIVLTQGLRA 422 Query: 367 ILKSSPDVPRSLSRLKIGRGEP-KDIAVIRDGIRSGINILNLF-------LKNDLPEELR 418 L D RS+ RL G G+ +A I DG+ + L L ++ + Sbjct: 423 NLSKVGDFIRSVQRLSFGTGDSVSHLAAIADGLYKLDRVEELLKQQKRSKLWDEFLHKFS 482 Query: 419 GAVEKLKKLPQSLEKTLSSMLSDDLPTFKR-DGGFLRDGADASLDETRSLRDQSKRIIAS 477 + +K+ ++L LS +++D+ +R D LR GA + S + + + Sbjct: 483 VPITVAEKIDETL--NLSELINDNSTLEEREDNKKLRVGAKFFVRP--SFNSELALLHSE 538 Query: 478 LQLKYAEETKI------------KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIH 525 LQ EE K+ L I ++ G F V S K +E+ + Sbjct: 539 LQTLLTEEDKLLEQITAQITDIDSKLAISKRDSHGRFSNVIHVSGKT--KSIEAVGNLLA 596 Query: 526 ---RQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQV 582 R+ + E L+ + + L +E + L ++ + + ASQ+ Sbjct: 597 KDVREKRKSTIIIKPYEWSMLQALVNSKVEEILEVEQKVISSLRTQVLASALPMRVASQL 656 Query: 583 IAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLS 642 + +D++ + +LA E RP + + + DGRH +VE LK F+ N L+ Sbjct: 657 VDFLDVTSSFGLLAHETELVRPKVVSQPKLEIIDGRHLVVESALKSLGEM-FVPNTSQLN 715 Query: 643 CPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGS 702 ++G +W++TGPNMGGKSTFLRQNALIVIMAQ+G +VPA A IG+VD++F+R+G+ Sbjct: 716 -----SNGTMWMITGPNMGGKSTFLRQNALIVIMAQIGCFVPAKRATIGVVDRIFTRIGA 770 Query: 703 ADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETN 762 +D+L + STFMVEMIET++IL A+ QS I+DEIGRGT+ +GL++A+A + +L + N Sbjct: 771 SDDLFNDLSTFMVEMIETSNILKNASQQSLAIVDEIGRGTSGKEGLAVAYAAMIHLLQVN 830 Query: 763 RCRGLLATHF-HELTDLSKS----LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQ 817 +CR L ATHF EL L + ++ HN V ++ II H++ PGI + SY ++ Sbjct: 831 KCRTLFATHFGRELVALLEEEGVDTRKLHNYRTSVVKNDSQIIMNHRLEPGITERSYALE 890 Query: 818 VGKLAGLPNTVI---SRAYDILKTFEKLYHHNQKD 849 V +++ P+ + SR D+L T E + + +D Sbjct: 891 VARMSNFPDHAMQTASRVLDMLTTREWKVNEHHRD 925 >gi|68476941|ref|XP_717448.1| hypothetical protein CaO19.8126 [Candida albicans SC5314] gi|68477132|ref|XP_717359.1| hypothetical protein CaO19.496 [Candida albicans SC5314] gi|46439068|gb|EAK98390.1| hypothetical protein CaO19.496 [Candida albicans SC5314] gi|46439161|gb|EAK98482.1| hypothetical protein CaO19.8126 [Candida albicans SC5314] gi|238879873|gb|EEQ43511.1| conserved hypothetical protein [Candida albicans WO-1] Length = 923 Score = 336 bits (862), Expect = 9e-90, Method: Compositional matrix adjust. Identities = 266/896 (29%), Positives = 438/896 (48%), Gaps = 110/896 (12%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P++ + NP + ++G FYEL+F+ A LG+ + K+ K +P G Sbjct: 50 SPLLASMKRLIDSNPGCVSLIQVGSFYELYFEQAEEYGPKLGLKIAKK-KTSNHVVPFAG 108 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P + + LI H + I + + N++LV R + R++TPGTL ++ L Sbjct: 109 FPTTQLRKFTEMLI---HEQQVNVAIIDQCDQGSKTNQNLVHRKISRIITPGTLIDESFL 165 Query: 146 SPTDSNYLMAVARI----------RTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPR 195 + ++NYL+A++ + + ++W DIS G + + L SDI RI+P Sbjct: 166 NFNENNYLVAISFAPSSLSLPPDPQMKVGLSWTDISVGESFVQLTTLGELSSDIARINPS 225 Query: 196 EII----FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSIS---ESRIADYYNITTVDT 248 EI+ F + L ++ S + L + HS + E ++ + +I V Sbjct: 226 EILLPKEFQDHNLHLGQWYSPLQELKRYIIRY------HSTTNYNELKLQYHDSIQKVRR 279 Query: 249 -FGSFSQVEKTAAAAAISYIKKTQMVNKPTIG----YPEREDIQSTLFIDSAARSNLEIL 303 +FS E+ A +SY+ +N P + P R ++ L +DS R LE+ Sbjct: 280 HLETFSPREQAALNMIMSYMS----INLPDVDILMTLPTRYFNETCLQMDSRTREALELT 335 Query: 304 -RTLSG--SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL 360 RT++G S SL+ I + T +G RL E I SP D+ I R + F++N L Sbjct: 336 ERTIAGRTSSVGSLVSVIKRTCTSSGTRLLTEWIKSPSLDTKDIEKRQSFVKMFLKNQHL 395 Query: 361 INPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINIL--------------- 405 ++ L+ D R+L +L +GRG+P + V G+ L Sbjct: 396 KIVTRQHLQQLGDFIRNLQKLVVGRGDPVNQLVYAASTLDGLQKLRDFLVEEYEQNPKKL 455 Query: 406 ----NLFLKNDLPEELRGAV----------------EKLKKLPQSLEKTLSSMLSDDLPT 445 NL K D+P+ L + E++++ + +E T SS + L Sbjct: 456 SCLKNLLEKFDIPKHLAEKIYNTIDIEEQTIPGEGSEEIEEPTEVVEDTNSSYTNSFLEK 515 Query: 446 F--KRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE----TKIKN--------L 491 + K++G A+ R D+ K + L EE +K++N L Sbjct: 516 YRSKQEGN---TDAENFYSVKRDFNDELKILHDELSELEVEEHKLWSKLRNVLDDIDVKL 572 Query: 492 KIKHNNNLGYF---IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 I LG + I +T ++S+ K + ++ + MS + R T E D+++ I Sbjct: 573 NIGKKIVLGRYNNVILITGKTSSISKASAKLDGDILYEKKMSLVYRST--EWNDIQHLIL 630 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDN 608 + + LL+E + E L + + + + + +D++ +LAI+A+E N+ P + Sbjct: 631 DKKEAILLVERKIIEELKSEVTRRFPEFRELAGLADFLDVTSSLAIVAEENNWTCPKLIK 690 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 + V+ GRH +VE +LK S FI ND + G LW+++GPNMGGKST+LR Sbjct: 691 TPRLSVEGGRHVVVESSLKD-SGNMFIPNDSKMGT-----DGTLWVISGPNMGGKSTYLR 744 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 QNALIVI+AQ+GS+VPA A IG+VDK+F+R+G+ D+L + STFMVEM+E ++IL AT Sbjct: 745 QNALIVILAQIGSFVPAEKATIGLVDKIFTRIGATDDLFNDLSTFMVEMVEVSNILTNAT 804 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHF-HELTDL-------SK 780 S I+DEIGRGT+ +GL+IA+AT+ L + N+CR L ATHF EL L K Sbjct: 805 PSSLAIVDEIGRGTSGKEGLAIAYATLLSLLQVNKCRTLFATHFGKELEQLLVANNIDQK 864 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 +++ F L+ D+ +G + H + PGI++ S+ + V ++AG P + A +L Sbjct: 865 NIRYFRTRVLENGDNEKGFVIDHTLEPGISERSHALDVARMAGFPENALKAAEKVL 920 >gi|146422005|ref|XP_001486945.1| hypothetical protein PGUG_00322 [Meyerozyma guilliermondii ATCC 6260] Length = 925 Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 263/881 (29%), Positives = 431/881 (48%), Gaps = 84/881 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ +I N + ++G FYE++FD A LGI + R K IPM G Sbjct: 72 TPLYASINKIIDANKGCVCLVQVGSFYEIYFDQAQEYGPKLGIKVASR-KTNNCIIPMAG 130 Query: 86 VPVHTANHYIQKLIK-IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 P + +++ LI+ +AI +Q P+E KR +++ R V R+VTPGTL ++ Sbjct: 131 FPTYQLQKFVKMLIQDYNVNVAIIDQY--PME--KRTMDAIIHRKVSRIVTPGTLVDETF 186 Query: 145 LSPTDSNYLMAV----------ARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDP 194 L+ +NYL A+ A E ++W+D+S G F + + + ++SDI RI+P Sbjct: 187 LNYNQNNYLAAIHLPPGCTKTIADPAMEVGLSWVDVSVGEFYVQRTTLEDVVSDIFRINP 246 Query: 195 REIIFSEK-----ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTF 249 EII ++ L+ Y L E V+ D + + Y T Sbjct: 247 SEIIIPKEFQDLGLLTGNWYTPLSELRRYFLRYHQTVYKDLKL---QFTSSYQATR-KAI 302 Query: 250 GSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEIL-RTLSG 308 S E+ A +SYI P + P + + + +D R LE+ R+ +G Sbjct: 303 ELLSVREEAAMNMILSYINVNIPEANPALDIPTQYWNEKYVRMDPRTREALELTERSTAG 362 Query: 309 SRE--QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK 366 R +L+ TI ++T +G R+ ++ I SP+ D +N R D + F + +L ++ Sbjct: 363 RRSVVGTLVSTIRKTVTPSGTRMLSQWINSPILDIETLNYRYDFVEAFRADIVLTQGLRA 422 Query: 367 ILKSSPDVPRSLSRLKIGRGEP-KDIAVIRDGIRSGINILNLF-------LKNDLPEELR 418 L D RS+ RL G G+ +A I DG+ + L L ++ + Sbjct: 423 NLSKVGDFIRSVQRLSFGTGDSVSHLAAIADGLYKLDRVEELLKQQKRSKLWDEFLHKFS 482 Query: 419 GAVEKLKKLPQSLEKTLSSMLSDDLPTFKR-DGGFLRDGADASLDETRSLRDQSKRIIAS 477 + +K+ ++L LS +++D+ +R D LR GA + S + + + Sbjct: 483 VPITVAEKIDETL--NLSELINDNSTLEEREDNKKLRVGAKFFVRP--SFNSELALLHSE 538 Query: 478 LQLKYAEETKI------------KNLKIKHNNNLGYFIEVTSSSA---------SVLKKD 516 LQ EE K+ L I ++ G F V S ++L KD Sbjct: 539 LQTLLTEEDKLLEQITAQITDIDSKLAISKRDSHGRFSNVIHVSGKTKLIEAVGNLLAKD 598 Query: 517 LESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESL 576 + K R++ + + E L+ + + L +E + L ++ + + Sbjct: 599 VREK-----RKSTIIIKPY---EWSMLQALVNSKVEEILEVEQKVISSLRTQVLASALPM 650 Query: 577 DNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIA 636 ASQ++ +D++ + +LA E RP + + + DGRH +VE LK F+ Sbjct: 651 RVASQLVDFLDVTSSFGLLAHETELVRPKVVSQPKLEIIDGRHLVVESALKSLGEM-FVP 709 Query: 637 NDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKL 696 N L+ ++G +W++TGPNMGGKSTFLRQNALIVIMAQ+G +VPA A IG+VD++ Sbjct: 710 NTSQLN-----SNGTMWMITGPNMGGKSTFLRQNALIVIMAQIGCFVPAKRATIGVVDRI 764 Query: 697 FSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIE 756 F+R+G++D+L + STFMVEMIET++IL A+ QS I+DEIGRGT+ +GL++A+A + Sbjct: 765 FTRIGASDDLFNDLSTFMVEMIETSNILKNASQQSLAIVDEIGRGTSGKEGLAVAYAAMI 824 Query: 757 YLHETNRCRGLLATHF-HELTDLSKS----LKRFHNATLQVSDSNEGIIFLHKVIPGIAD 811 +L + N+CR L ATHF EL L + ++ HN V ++ II H++ PGI + Sbjct: 825 HLLQVNKCRTLFATHFGRELVALLEEEGVDTRKLHNYRTSVVKNDSQIIMNHRLEPGITE 884 Query: 812 HSYGIQVGKLAGLPNTVI---SRAYDILKTFEKLYHHNQKD 849 SY ++V +++ P+ + SR D+L T E + + +D Sbjct: 885 RSYALEVARMSNFPDHAMQTASRVLDMLTTREWKVNEHHRD 925 >gi|302506867|ref|XP_003015390.1| hypothetical protein ARB_06513 [Arthroderma benhamiae CBS 112371] gi|291178962|gb|EFE34750.1| hypothetical protein ARB_06513 [Arthroderma benhamiae CBS 112371] Length = 983 Score = 335 bits (860), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 275/926 (29%), Positives = 443/926 (47%), Gaps = 153/926 (16%) Query: 40 PDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLI 99 P+ ++ R+G+FYEL+F A + L + L + +G +PM G P + +++ L+ Sbjct: 90 PNCVLLTRVGNFYELYFHQAEEYASLLNLKLAYKKTAVGP-VPMAGFPYFQLDRFLKTLV 148 Query: 100 K-IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMA--- 155 + + +AI E+ + AK + + R V R+VTPGTL +++ + +NYL++ Sbjct: 149 QEMKKNVAISEEFANDAAAKAKAGGLMFDRKVARIVTPGTLIDEKFIDQYQNNYLLSIHV 208 Query: 156 --------------VARIRTEW-------AIAWIDISTGIFKISTSNHDRLISDIMRIDP 194 V R + ++W+D+STG F ++ L S I RI Sbjct: 209 DPSLNSLQSGTDDQVTRGQLNCLPDSDIIGLSWLDLSTGDFLTQVTSPQMLASAITRIGA 268 Query: 195 REIIFSE--KELSHAEYKSL----------FETLGNV-AVAQPNVFFDHSISESRIADYY 241 REI+ + +E +E ++L F++ N+ +++ N FD IS S +A Sbjct: 269 REILVDQGIEEPLRSELEALVVQEHQPITYFQSPKNIQPLSEWNPSFDSPIS-SEVASM- 326 Query: 242 NITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLE 301 F+ E +A + Y++K + P R+ + ++ ID LE Sbjct: 327 ----------FTPQEVSACQMVLEYVRKQIKQTDVRLQPPRRKVAEDSMSIDRNCLRGLE 376 Query: 302 ILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL 360 IL T G + SLL + + T +G RL ER+ I+ +++ L Sbjct: 377 ILETARDGFGKGSLLHAVRRTSTSSGARLLRERL----------------ISLLLEDEDL 420 Query: 361 INPIQKILKSSPDVPR----------------SLSRLKIGRGEPKDI-----------AV 393 I ++LK S D R LSR G+ K I A Sbjct: 421 RENIMRLLKRSYDTQRLVQKFSLGRGLPDDLICLSRAIDASGDIKSILEQKLTAVESKAA 480 Query: 394 IRDGIRSGINILNLFLKNDL--PEELRGAV-----EKLKKLPQSLEKTLSS--------- 437 I S +I L + +L P EL ++ E++ Q +E+ ++ Sbjct: 481 AEGDISSSKSIRPLLHRFNLHGPGELSRSIQDSIDEEMLLQKQRVEEDAAAGDSALAHDV 540 Query: 438 MLSD----DLPTF-------KRDGGFLRDGADASLDETRSLRDQSKRIIA----SLQLKY 482 +LS+ DL K DG G D+ D +R + +I+ +L+ Y Sbjct: 541 LLSEGSDADLNAMPKKVKDSKGDGPKGPSGPDSPSDTAWIMRPDASKILRNLHDALENLY 600 Query: 483 AEETKI----------KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNL 532 +E+ K+ L +K LG+ + + + A +KK LE D + R S+ Sbjct: 601 SEKAKLTKRLQQTLDTAQLSLKWTPGLGHIVHMKGTKA--MKKSLE--DLGVTRTVSSSK 656 Query: 533 T--RFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISI 590 + F L ++ + + E F+ L + +I L + V+ +D++ Sbjct: 657 STRSFYLPSWTQLGAKLESMKQQIRVEEQHIFKRLRHMVILNLVKLRRNASVLDELDVAC 716 Query: 591 ALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSG 650 + A LAKEQ RPI++N + + GRHP V+ +++Q +PF++NDC + Sbjct: 717 SFAALAKEQGMVRPIVNNGLSHKIIGGRHPTVKLGVEEQG-RPFVSNDCFVG-----GKE 770 Query: 651 KLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGR 710 ++ L+TGPNM GKSTFLRQNALI I+AQ+GSYVPA YA IG+VDK+FSR+G+AD+L + Sbjct: 771 RILLITGPNMAGKSTFLRQNALITILAQVGSYVPAEYAEIGLVDKIFSRIGAADDLFRDQ 830 Query: 711 STFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLAT 770 STFMVEM+ETASIL AT +SFVI+DE+GRGT DG ++ +A + +LH N+ R L AT Sbjct: 831 STFMVEMLETASILKHATPRSFVIMDEVGRGTTPEDGTAVGFACLHHLHNENKARTLFAT 890 Query: 771 HFHELTDLSKSLKRFHNATLQV-SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVI 829 HFH L D++ + + DS+ G F+HK+ PG+ S+ ++V LAGLP +VI Sbjct: 891 HFHALADMTADFQHVGRYCTDLKEDSSGGFSFVHKLRPGVNRQSHALKVAHLAGLPQSVI 950 Query: 830 SRAYDILKTFE----KLYHHNQKDMR 851 A D++K +L H ++D R Sbjct: 951 DVAEDVIKKMPAMGTELGHQVEEDCR 976 >gi|302414634|ref|XP_003005149.1| DNA mismatch repair protein mutS [Verticillium albo-atrum VaMs.102] gi|261356218|gb|EEY18646.1| DNA mismatch repair protein mutS [Verticillium albo-atrum VaMs.102] Length = 946 Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 244/854 (28%), Positives = 410/854 (48%), Gaps = 95/854 (11%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 + ++ R+G FYEL+F+ A L + + ++ G + M G P +++ L++ Sbjct: 119 NCVLLTRVGGFYELYFEHADEYGPLLNLKVAQKKTTAGP-VSMAGFPFFQLERFLKILVQ 177 Query: 101 -IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAV--- 156 + +A+ E+ K + + R V R++TPGTL ++ + P +NY++A+ Sbjct: 178 DLNRYVAVAEEFPKNAADKIKSGGLMHDRRVARIITPGTLIDENFMDPYVNNYVLAIHAP 237 Query: 157 -----ARIR-----------------TEWAIAWIDISTGIFKISTSNHDRLISDIMRIDP 194 A ++ T +AW+D+STG F +N L S + RI P Sbjct: 238 SPCGTATVQASSVTAGRDALGASPPSTCLGLAWLDLSTGQFFTEAANMSALPSVLSRISP 297 Query: 195 REIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESR-IADYYNI----TTVDTF 249 +E++ + S ++ + ++ ++ H E+ +AD+ + D Sbjct: 298 KEVVLDQALQSSKDHDVV-----SILAEDRHLITYHPPGEATGLADWAPMLESEVPEDRR 352 Query: 250 GSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SG 308 +F+ E TA + ++Y+ + + P R S + ID LEI +T+ G Sbjct: 353 AAFTSEEVTAGSLLLNYVGERLQGLSLKLQPPVRHGTMSVMSIDKNTMRALEIKQTIRDG 412 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKIL 368 SLL I ++T +G RL E +++P T I RLD + FI+ L + + +L Sbjct: 413 YFRGSLLHAIRRTVTKSGARLLNEWLSAPSTSLEVIEARLDLVTCFIEKADLRDTVILLL 472 Query: 369 KSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLK----NDLPEELRGAVEKL 424 + S D R + + +GRG+P D+ + +++ +I K L + +L Sbjct: 473 RRSHDSQRLVQKFALGRGDPDDLLALASTVQACNDIATRLSKAAKTGATANCLAAVIARL 532 Query: 425 K-KLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLD-------ETRSLRDQSKRIIA 476 K P L + + + ++ + + + DG + +D + +I Sbjct: 533 DLKKPTELARRIQEAIDEEGVVHQHE---IEDGEAGHMMALAQEIVHAEGSQDDAAAVIP 589 Query: 477 SLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFT 536 +K +T+ +++ + ++ + A V+K + +H + T Sbjct: 590 KTTVKKPGKTRPTSVREYYADD---------NEAWVMKPSASPRLERLHAE-------LT 633 Query: 537 TLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILA 596 T L + + A F A QS V+ +DI+ +LA+LA Sbjct: 634 TPRLCETCHPFRGAA---------CFPSPPRACHPQSRQAPPQPAVLDELDIATSLALLA 684 Query: 597 KEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLT 656 ++Q RP +++ST + GRHP VE L ++ + F+ NDC L P ++ LWL+T Sbjct: 685 RDQGLTRPRLNHSTTTTILGGRHPTVEGGLTERG-RSFVRNDCLLG-PAPAHA-PLWLIT 741 Query: 657 GPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVE 716 GPNM GKSTFLRQNALI ++AQ G YVPA++A +G+VD LFSRVGSADNL +STFMVE Sbjct: 742 GPNMAGKSTFLRQNALITVLAQTGCYVPAAHAELGLVDALFSRVGSADNLYRDQSTFMVE 801 Query: 717 MIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELT 776 M+ETA IL AT +S VI+DEIGRGT DG ++A+A++++L NRCR L ATHFH + Sbjct: 802 MLETAHILRAATPRSLVIMDEIGRGTTPEDGAAVAFASLQHLVTVNRCRALFATHFHAVA 861 Query: 777 DLS-------------KSLKRFHNATLQV-SDSNEGIIFLHKVIPGIADHSYGIQVGKLA 822 DL+ + R V D + G +++HK+ G+ S+ ++V +LA Sbjct: 862 DLAAARGLCGRGEGDGRDAGRVETYCTDVEEDDSGGFVYVHKLRKGVNRQSHALKVARLA 921 Query: 823 GLPNTVISRAYDIL 836 GLP + I A D+L Sbjct: 922 GLPASAIQVAGDVL 935 >gi|255525226|ref|ZP_05392168.1| DNA mismatch repair protein MutS domain protein [Clostridium carboxidivorans P7] gi|255511089|gb|EET87387.1| DNA mismatch repair protein MutS domain protein [Clostridium carboxidivorans P7] Length = 512 Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 171/402 (42%), Positives = 266/402 (66%), Gaps = 15/402 (3%) Query: 442 DLPTFK-RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 D P+ ++G +++G + +DE + + K IASL+ E T IK+LK+ +N G Sbjct: 21 DTPSISLKEGNLIKEGYNGEVDELKLAKAHGKDWIASLENSEREITGIKSLKVGYNKVFG 80 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 Y+IEVT S+ S + + R+I +QT++N R+ T L ++E++I A + +E + Sbjct: 81 YYIEVTKSNLSSI-----PEGRYIRKQTLANAERYITPSLKEMEDKILGAEEKLINLEYD 135 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 F + + I +Q + + +++I+ ID +LA +A E NYC+P I + + +++GRHP Sbjct: 136 IFIDVRDKIEKQVDRMQETAKIISEIDCLSSLATIALENNYCKPEISSKEDICIEEGRHP 195 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +VEK + SS FI+ND ++ +++ L ++TGPNM GKST++RQ ALIV+MAQ+G Sbjct: 196 VVEKMI---SSGSFISNDTVINTSDEQ----LLIITGPNMAGKSTYMRQVALIVLMAQIG 248 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA A I + DK+F+R+G++D+LA+G+STFMVEM E ++IL ATN+S ++LDE+GR Sbjct: 249 SFVPAKKAVISVCDKIFTRIGASDDLAAGKSTFMVEMWEVSNILKNATNKSLILLDEVGR 308 Query: 741 GTATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG 798 GT+T DGLSIAW+ IEY+ + +C+ L ATH+HELT L ++ N ++ V + Sbjct: 309 GTSTYDGLSIAWSVIEYICSSKKLKCKTLFATHYHELTKLESIIEGVKNYSVSVKEIGSD 368 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 I+FL K+I G AD SYGI+V KLAGLP+ VI RA +IL + E Sbjct: 369 IVFLRKIIRGGADQSYGIEVAKLAGLPDKVIERAKEILNSIE 410 >gi|213418505|ref|ZP_03351571.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 583 Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 207/620 (33%), Positives = 328/620 (52%), Gaps = 53/620 (8%) Query: 294 SAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINF 353 +A R NLEI + L+G E +L +D ++T G R+ + P+ ++ + R +I Sbjct: 1 AATRRNLEITQNLAGGVENTLAAVLDCTVTPMGSRMLKRWLHMPVRNTDILRERQQTIGA 60 Query: 354 FIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDL 413 ++ +Q +L+ D+ R L+RL + P+D+A +R + L Sbjct: 61 LQDT---VSELQPVLRQVGDLERILARLALRTARPRDLARMRHAFQQ------------L 105 Query: 414 PEELRGAVEKLKKLP-QSLEKT----------LSSMLSDDLPTFKRDGGFLRDGADASLD 462 PE L +E + P Q+L K L + D P RDGG + G LD Sbjct: 106 PE-LHAQLETVDSAPVQALRKKMGDFAELRDLLERAIIDAPPVLVRDGGVIAPGYHEELD 164 Query: 463 ETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDR 522 E R+L D + + L+++ E T + LK+ +N GY+I+++ + + + Sbjct: 165 EWRALADGATDYLDRLEIRERERTGLDTLKVGYNAVHGYYIQISRGQSHL------APIN 218 Query: 523 FIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQV 582 ++ RQT+ N R+ EL + E+++ + AL +E + ++ L + ++ L ++ Sbjct: 219 YVRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYDELFDLLLPHLADLQQSANA 278 Query: 583 IAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLS 642 +A +D+ + LA A NY P + + +GRHP+VE+ L + PFIAN +LS Sbjct: 279 LAELDVLVNLAERAWTLNYTCPTFTDKPGIRITEGRHPVVEQVLNE----PFIANPLNLS 334 Query: 643 CPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGS 702 ++ ++TGPNMGGKST++RQ ALI ++A +GSYVPA IG +D++F+RVG+ Sbjct: 335 PQR-----RMLIITGPNMGGKSTYMRQTALIALLAYIGSYVPAQNVEIGPIDRIFTRVGA 389 Query: 703 ADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETN 762 AD+LASGRSTFMVEM ETA+IL+ AT S V++DEIGRGT+T DGLS+AWA E L Sbjct: 390 ADDLASGRSTFMVEMTETANILHNATENSLVLMDEIGRGTSTYDGLSLAWACAENLANKI 449 Query: 763 RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLA 822 + L ATH+ ELT L + ++ N L + + I F+H V G A SYG+ V LA Sbjct: 450 KALTLFATHYFELTQLPEKMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALA 509 Query: 823 GLPNTVISRAYDILKTFEKLYHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKC 879 G+P VI RA L+ E + + Q D T+ S + VE ++ Sbjct: 510 GVPKEVIKRARQKLRELESISPNAAATQVD--------GTQMSLLAAPEETSPAVEALEN 561 Query: 880 LNLDEMSPLTALKTLYAVKA 899 L+ D ++P AL+ +Y +K+ Sbjct: 562 LDPDSLTPRQALEWIYRLKS 581 >gi|312178717|gb|ADQ39296.1| DNA mismatch repair protein [uncultured bacterium] Length = 558 Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 205/587 (34%), Positives = 317/587 (54%), Gaps = 41/587 (6%) Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D + G RL I P+ D+ + R +++ I N L P+Q+ L+ D+ R L Sbjct: 1 DRCRSAMGSRLLRRWIQRPVRDAATLRKRYQALDTLILNR-LAAPLQETLQGIGDIERIL 59 Query: 379 SRLKIGRGEPKDIAVIRDG------IRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE 432 SR+ + P+D+ + IR + ++ L L E++R S E Sbjct: 60 SRVALRSARPRDLRQLARALSRIPEIRGTLTDVDSPLLAALNEQIRN---------HSRE 110 Query: 433 KTL-SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 K L L +D P GG + DG D LD+ R++ + + + L+ + E T I L Sbjct: 111 KDLLQKALVEDPPMLVSQGGVIADGYDDELDDLRAIARNADQYLIDLEKREKERTGIPTL 170 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 K+ +N GY+IE++ A D ++ RQT+ R+ T EL + E+++ +A Sbjct: 171 KLGYNRVHGYYIEISKGQADKAPAD------YVRRQTLKGAERYITPELKEFEDKVLSAR 224 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 AL E ++ + + + + L + +A +D+ + A A N C+P I + + Sbjct: 225 ERALGRERILYDGILDELTARLAELQETASGLAELDVLVCFADRAVALNLCQPEIVDEPS 284 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 ++ GRH +VE+ L+ PF+AND L ND +L ++TGPNMGGKST++RQ A Sbjct: 285 LEIRGGRHLVVEQVLE----TPFVANDLSL---NDGQ--RLMVITGPNMGGKSTYMRQAA 335 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LIV++A +GS+VPA +G +D++F+R+G++D+LA GRSTFMVEM ETA+ILN AT QS Sbjct: 336 LIVVLAHVGSFVPAESLRLGPIDRIFTRIGASDDLAGGRSTFMVEMTETATILNNATEQS 395 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 V++DEIGRGT+T DGLS+AWA Y+ E R + ATH+ ELT L++ + N L Sbjct: 396 LVLMDEIGRGTSTFDGLSLAWAAAHYMGEKLRAFTMFATHYFELTALAEEIPDCVNVHLD 455 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR 851 ++ ++FLH V PG A+ SYG+QV LAG+P VI RA L T E R Sbjct: 456 ATEHKGQLVFLHAVKPGPANQSYGLQVAALAGVPRAVIRRANSYLATLE-------TQQR 508 Query: 852 LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 +P+ Q S + D+L E + ++ D M+P AL+ +Y +K Sbjct: 509 QEHPQAQLPFSSAD-ELTDELG-EAMDGIDPDAMTPKQALEAIYRLK 553 >gi|320189063|gb|EFW63722.1| DNA mismatch repair protein MutS [Escherichia coli O157:H7 str. EC1212] Length = 639 Score = 333 bits (854), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 220/679 (32%), Positives = 354/679 (52%), Gaps = 62/679 (9%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIG-ALQD--FTAELQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LP ELR +E + P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LP-ELRAQLETVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E+++ + AL +E + +E L + ++ E+L ++ +A +D+ + LA A NY Sbjct: 509 YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYT 568 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + + +GRHP+VE+ L ++PFIAN +LS ++ ++TGPNMGG Sbjct: 569 CPTFIDKPGIRITEGRHPVVEQVL----NEPFIANPLNLSPQR-----RMLIITGPNMGG 619 Query: 663 KSTFLRQNALIVIMAQMGS 681 KST++RQ ALI +MA +GS Sbjct: 620 KSTYMRQTALIALMAYIGS 638 >gi|229896461|ref|ZP_04511629.1| DNA mismatch repair protein MutS [Yersinia pestis Pestoides A] gi|229700535|gb|EEO88566.1| DNA mismatch repair protein MutS [Yersinia pestis Pestoides A] Length = 567 Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 207/589 (35%), Positives = 317/589 (53%), Gaps = 43/589 (7%) Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D S+T G R+ + P+ D + R +I +Q+ + +Q L+ D+ R Sbjct: 11 LDCSVTPMGSRMLKRWLHMPIRDIRVLTDRQQAIGG-LQD--IAAELQTPLRQVGDLERI 67 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKTL 435 L+RL + P+D+A +R + I L D+P + L V + +L LE+ + Sbjct: 68 LARLALRTARPRDLARMRHAFQQLPEIHRLLQPIDVPHVQNLLSQVGQFDELQDLLERAI 127 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + P RDGG + G +A LDE R+L D + + L+++ E+ + LK+ Sbjct: 128 V----ETPPVLVRDGGVIASGYNAELDEWRALADGATDYLDRLEIREREKLGLDTLKVGF 183 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+I+V+ + ++ ++ RQT+ N R+ EL + E+++ + AL Sbjct: 184 NGVHGYYIQVSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSKGKAL 237 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 IE +E + + ++ L ++ +A +D+ LA A+ NY P + + + Sbjct: 238 AIEKGLYEEIFDLLLPHLPELQLSANALAELDVLANLAERAETLNYSCPTLSDKPGIKIM 297 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ LK+ PFI+N LS ++ ++TGPNMGGKST++RQ ALIV+ Sbjct: 298 GGRHPVVEQVLKE----PFISNPLTLSPQR-----RMLIITGPNMGGKSTYMRQTALIVL 348 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +A +GSYVPA A IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT QS V++ Sbjct: 349 LAHLGSYVPADQATIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEQSLVLM 408 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 409 DEIGRGTSTYDGLSLAWACAENLASRIKAMTLFATHYFELTTLPEKMEGVVNVHLDALEH 468 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH------NQKD 849 E I F+H V G A SYG+ V LAG+P VI RA LK E L ++ + Sbjct: 469 GETIAFMHSVQEGAASKSYGLAVAALAGVPRDVIKRARQKLKELESLSNNAAASTIDGSQ 528 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 M L EI VE ++ L+ D +SP AL+ +Y +K Sbjct: 529 MTLLNEEIPPA-------------VEALEALDPDSLSPRQALEWIYRLK 564 >gi|164659584|ref|XP_001730916.1| hypothetical protein MGL_1915 [Malassezia globosa CBS 7966] gi|159104814|gb|EDP43702.1| hypothetical protein MGL_1915 [Malassezia globosa CBS 7966] Length = 960 Score = 331 bits (848), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 267/931 (28%), Positives = 441/931 (47%), Gaps = 146/931 (15%) Query: 27 PMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGV 86 P+ +E P ++ R+G FYE +FD A ++ L I L R K G+ IPM G Sbjct: 62 PLALGVLENMRAFPKCILLTRVGGFYESYFDQAPTVAQTLSIKLASR-KWAGQSIPMAGF 120 Query: 87 PVHTANHYIQKLIK-IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P+H Y++ L++ G +AICE+ ++ L + G S RR V R+V+PGTL +++ L Sbjct: 121 PIHQLEKYLKVLVQDCGMLVAICEEFKASLSS---GAPSFQRR-VTRVVSPGTLIDERFL 176 Query: 146 SPTDSNYLMAVARIRT------------------------EWAIAWIDISTGIFKISTSN 181 P +N+++AV+ + +AW+D+ST F N Sbjct: 177 DPFHNNFILAVSSPPPLSPTPSSSLPSSASAPGSTLSAGRSYGLAWLDVSTADFGTVVHN 236 Query: 182 HDRLISD-IMRIDPREIIFSEKEL--SHAEYKSLFETLGNVAV------AQPNVFFDHSI 232 ++ + D I+R+ PRE++ SH Y++ VA AQ N+ + Sbjct: 237 DEKTLRDEIVRLAPREVVLIADAFDASHPVYEATNRVQAPVAFVPTLTHAQENIL---GV 293 Query: 233 SESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTI-----GYPEREDIQ 287 S++ + D E+ A SY++ + + P + G R Sbjct: 294 SQANLCD---------------AERKAIEILTSYLQTRLLEHMPGMSVCEEGGSARASGD 338 Query: 288 STLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTR 347 + +D+A + LEI T S SL+ + ++T G RL + + P I R Sbjct: 339 YVMHLDAATLNALEIRETQDHSARGSLVSIVRRTVTQGGARLCVQWLTQPSMSLRLIRAR 398 Query: 348 LDSINFFIQNPILINPIQKILKSS-PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILN 406 + F+Q L ++ +L++ D+ R+L R+ + R + +D+ IRD IR+ ++ Sbjct: 399 HALVELFLQRSFLRQDLRVLLRTGVGDIMRTLQRISLRRNDEQDLLEIRDFIRTSERLVA 458 Query: 407 LFLKNDLPE--ELRGAVEKLKKLPQSLEKTLSSMLSDD--------LPTFKR--DGGFLR 454 D+ E EL L L + LE + + + L T+ GG + Sbjct: 459 SLASIDVHELHELLQRFTALHALGERLEMAIDERVMEKRIQQQEARLQTYDAMYAGGPM- 517 Query: 455 DGADASLDETRS-----------------------LRDQSKRIIASLQLKY----AEETK 487 ADAS R+ +R + ++ +L ++ AE Sbjct: 518 PPADASAPSKRTRRTSSPPSLTLPESMWGDNIEHLIRPDASPLLLTLTNEFNALRAEART 577 Query: 488 IKN-LKIKHNNNL--------GYFIEVTSSSASVLKK-DLESKDRFIHRQTMSNLTRFTT 537 ++N L+ +H+ + G+ + S V + L K + + TR T Sbjct: 578 LENALRAEHSEPVTLRFLLGQGHVVHFPSVRGHVSESLSLAYKTKTTRTYYHAEWTRIGT 637 Query: 538 LELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAK 597 +L L ++++ E E L ++E + +L ++++ +D+ + A +A+ Sbjct: 638 -QLQKLRDQLSEC-------ERRMLETLRLEVLEHTAALRRNARLVDQLDVLLGFAQVAE 689 Query: 598 EQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTG 657 E + RP +D ST+F +K GRH VE L ++ + F ND +L +L L+TG Sbjct: 690 ELSLVRPQMDESTSFDIKGGRHLGVEMGLLERE-RLFTKNDLELG-----GQARLHLVTG 743 Query: 658 PNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEM 717 PNMGGKSTFLRQNA++ ++AQ GS+VPA A +G+VD +FSRVG+ D+L RSTFMVEM Sbjct: 744 PNMGGKSTFLRQNAVMAVLAQAGSFVPAESARLGLVDAIFSRVGAKDDLFHSRSTFMVEM 803 Query: 718 IETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTD 777 ETA +L++AT +SFVI DEIGRGT T GLS+A+A + L +CR L ATH++EL D Sbjct: 804 AETAELLHRATQRSFVIADEIGRGTNTSVGLSVAFAVLYTLAMRIQCRSLFATHYYELAD 863 Query: 778 L------------SKSLKR---FHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLA 822 + +++L+R F L+ S+ ++F H+V PG+ S+G+ + +LA Sbjct: 864 ILEKHPSSSQLPQTQALRRAVGFFCTRLE-QRSDGALLFSHRVRPGVNRASHGLDIARLA 922 Query: 823 GLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 +P + A ++T L H Q MR + Sbjct: 923 DMPPDTMELA---VRTHSWLVKHGQAHMRTH 950 >gi|226290968|gb|EEH46396.1| DNA mismatch repair protein mutS [Paracoccidioides brasiliensis Pb18] Length = 966 Score = 330 bits (847), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 256/876 (29%), Positives = 420/876 (47%), Gaps = 110/876 (12%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 + ++ R+G+FYEL+F+ A ++ L + L ++ + G +PM G P +++ L++ Sbjct: 95 NCVLLTRVGNFYELYFEQAEEYAKLLNLKLAQKKTNAGV-VPMAGFPYFQLERFLKILVQ 153 Query: 101 -IGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVAR 158 + +AI E+ S +E K G R+ V R+VTPGTL +++ + P ++N+L++V Sbjct: 154 DLNKYVAISEEYRNSEVEKAKSGGLQYDRK-VARIVTPGTLIDEKFMDPFENNFLLSVYM 212 Query: 159 IRTEWAIAWIDISTGIFK-ISTSNH---DRLISDIMRIDPREIIFSEKELSHAEYKSLFE 214 T I +S G IS S D + D + + + I+ +++ +K + Sbjct: 213 AHTLPEETEI-LSPGQHPYISGSRSIVIDVQVDDKFKQELQAIVGQDQKHLITSFKCQDQ 271 Query: 215 TLGNVAVAQPNVFFD-HSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMV 273 T + D S+ ES I T D F+ E + + Y+ Sbjct: 272 T---------KMLSDWSSVFESPI-------TPDAASMFTTEEIASCNMLLEYVHFQIRG 315 Query: 274 NKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSITGAGGRLFAE 332 + P R + ++ ID ++ LEIL T G + SLL + + T +G RL + Sbjct: 316 MNMKLQAPRRRHLDQSMTIDRSSLKGLEILETARDGLGKGSLLHAVRRTSTKSGARLLRD 375 Query: 333 RIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIA 392 R+ SP IN RLD ++ F+ + L I +LK S D R + + +GRG+ D+ Sbjct: 376 RLTSPSASLHIINERLDLVSKFLADEDLRQNITLLLKRSYDSQRLVQKFSLGRGDADDLI 435 Query: 393 VI-------RD--------------------------GIRSGINILNLFLKNDLPEELRG 419 + RD G+RS ++ LNL L + + G Sbjct: 436 CLSKTIQASRDIKDVLLQNIEGSDQPSDQEANPDVTRGLRSMLDRLNLNGLEALSKRILG 495 Query: 420 AV---------------------------------EKLKKLPQSLEKTLSSMLSDDLPTF 446 A+ E L+ +P+ ++ + + Sbjct: 496 AIDEEGLLQKQRIEDDAAAEAAALAQQVILNEGSPEDLEAMPKKIQDQYGAKQKESNGVE 555 Query: 447 KRDGG--FLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIE 504 + DG +R A L E D + L L+ + NL +K LG+ + Sbjct: 556 QSDGDAWIIRRDASEKLQELHDKLDYLNNEKSELTLELQDIAGTANLSLKWTPALGHIVH 615 Query: 505 VTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEI 564 V + AS ++ +E+ + + + F L +I A I+ E + Sbjct: 616 VKGTKAS--QQSVEALEGMRSVSSSKSTRSFYLSSWTQLGAQIGEAKEE---IKNEQQRV 670 Query: 565 LSNA---IIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 L N +I L + V+ +D++ + A LAKEQ RP+I+N T+ + GRHP Sbjct: 671 LRNLREDVILNLVKLRRNAAVLDELDVACSFANLAKEQRMVRPVINNGTSHKIVGGRHPT 730 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 V+ L++Q +PF++NDC + ++WL+TGPNM GKSTFLRQNALI I+AQ+GS Sbjct: 731 VKLGLEEQG-RPFVSNDCFIG-----EQERIWLITGPNMAGKSTFLRQNALITILAQVGS 784 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA +A IG+VD++FSR+G+AD+L +STFMVEM+ETA+IL AT SFVI+DE+GRG Sbjct: 785 FVPAEHAEIGVVDQIFSRIGAADDLFRNQSTFMVEMLETAAILKNATPHSFVIMDEVGRG 844 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG-II 800 T DG ++ +A + +LH N+CR L ATHF+ L D++ +R + + G Sbjct: 845 TTPEDGTAVGYACLLHLHNVNQCRTLFATHFYALADMTAGFERLARYCTDLKEDLSGSFS 904 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 F H++ G+ S+ +++ +LAGLP +VI A D+L Sbjct: 905 FDHRLRKGVNRRSHALKIARLAGLPESVIDVANDVL 940 >gi|299755819|ref|XP_001828908.2| MutS2 protein [Coprinopsis cinerea okayama7#130] gi|298411396|gb|EAU92915.2| MutS2 protein [Coprinopsis cinerea okayama7#130] Length = 884 Score = 330 bits (846), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 267/895 (29%), Positives = 426/895 (47%), Gaps = 93/895 (10%) Query: 18 LEENLKSSTPMMRQYIEIKSIN------PDSLVFYRMGDFYELFFDDALLASRCLGITLT 71 LEE+ +++ P + K + P L+ R+G FYE +F A + L I LT Sbjct: 6 LEESPEATPPASSRSPLAKEVQANLARFPHCLLLTRVGSFYESYFGQANEIASLLNIKLT 65 Query: 72 KRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHR-IAICEQIESPLEAKKRGNKSLVRRNV 130 R K G +PMCG P+ + Y++ L++ R +A+CE+ E G K RR + Sbjct: 66 SR-KWDGSRVPMCGFPIVHLDKYLKVLVQQHKRSVAMCEEFPRQTEF---GEKEFERR-I 120 Query: 131 VRLVTPGTLTEDQLLSPTDSNYLMAVARI----RTEWAIAWIDISTGIFKISTSNHDRLI 186 R+++PGTL ++ L P+++N+L+A+A + +AWID+STG F + L Sbjct: 121 TRIISPGTLIDEPFLEPSENNFLLALALPLDGGASSVGLAWIDVSTGEFYSKDCQPENLE 180 Query: 187 SDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFD-HSISESRIADYYNITT 245 +I+RI+P+E++ S + V + Q N+ F H + + D ++ Sbjct: 181 DEIVRINPKEVVLP----STMRTVDISRNPVLVMLQQQNIHFAFHGVEQH--PDVVSMLP 234 Query: 246 VDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT 305 + + E A A +Y+ T + + P++G P E L ID+ +LE+ T Sbjct: 235 FTPTPASASAEGEAVALLSNYLHFTLLEHAPSLGAPVHEMDNGRLHIDAHTIKSLELRET 294 Query: 306 -LSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPI 364 G SLL I ++T +G R A R+ SP +I + ++F +Q P L + Sbjct: 295 DYEGGTRGSLLNVIKRTVTTSGTRRLARRLCSPSASRPEIEGWQNLVSFLLQRPHLSFDL 354 Query: 365 QKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKL 424 ++ LK+ DV R + R + +G D+ + I+ I + L E RGA+ Sbjct: 355 RESLKNVGDVGRIVQRFLLRKGSIDDLVTVMKTIQLWTTITSRLQLERLLEG-RGALGDW 413 Query: 425 KKLPQSLEK-----TLSSMLSDDLPTFKRDGGFLRDG--ADASLDETRSLRD-------- 469 + L + +LS + D L R G DG D+ + T S RD Sbjct: 414 SSMDPMLGRISDLSSLSRRIQDAL---TRCGSREADGDPEDSLKESTGSSRDTQANSEWT 470 Query: 470 ---------------------QSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSS 508 Q + + L++ YA + L ++ + G + + S Sbjct: 471 INPQFSPKLFSLYATLHDLQRQKQDMEDRLRINYAAPS----LTLRSSAQQGMHVHL--S 524 Query: 509 SASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNA 568 A + L F+ ++ + L I + + E E+F L Sbjct: 525 RAKRDQGKLNDDPAFVKLAETASTKCYLYQPWSQLGGLIGSTMLAVAAAEREAFSELIAE 584 Query: 569 IIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQ 628 ++ ++ L +D+++ A LAK+ N RP I + + V +GRHP VE L Sbjct: 585 VLYYADELKANVAAQDDLDVALGFATLAKDLNLVRPKITENGEYHVVNGRHPAVELGL-L 643 Query: 629 QSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYA 688 S + F N +++ S + ++TGPNM GKST LRQ ALI ++AQ+GS+VPA A Sbjct: 644 VSGRTFTPNTIEMT-----PSSNVHVITGPNMAGKSTALRQTALIAVLAQIGSFVPADSA 698 Query: 689 HIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGL 748 I IVDKLF+R+G+ D+L RSTFMVEM+ETA IL +AT S VI+DE+GRGT DGL Sbjct: 699 TISIVDKLFTRIGAKDDLFRDRSTFMVEMMETAEILRRATPNSLVIMDEVGRGTTMKDGL 758 Query: 749 SIAWATIEYLHETNRCRGLLATHFHELTDL------SKSLKRFHNATLQVSDSNE----G 798 +IA+ATI ++ NR R L ATHFHEL+D+ + F+N +D +E Sbjct: 759 AIAFATIHHIATVNRSRCLFATHFHELSDMLGCDGEWQGSGVFNNVRFYCTDVDELDEDR 818 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYH----HNQKD 849 ++ +++ PG+ S+G++V +LAGLP + I A +T L H H + D Sbjct: 819 FVYSYRLHPGVNRDSHGLKVAQLAGLPPSAIDVAR---RTLSWLNHSRAIHQEPD 870 >gi|11514361|pdb|1EWR|A Chain A, Crystal Structure Of Taq Muts gi|11514362|pdb|1EWR|B Chain B, Crystal Structure Of Taq Muts Length = 649 Score = 330 bits (846), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 226/705 (32%), Positives = 357/705 (50%), Gaps = 79/705 (11%) Query: 135 TPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRID 193 TPGTL ++ LL P ++NYL A+A W +A++D+STG FK + + L ++ R Sbjct: 1 TPGTLLQESLL-PREANYLAAIA-TGDGWGLAFLDVSTGEFKGTVLKSKSALYDELFRHR 58 Query: 194 PREIIFSEKELSHA----EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTF 249 P E++ + + L + E++ F + + A +P Sbjct: 59 PAEVLLAPELLENGAFLDEFRKRFPVMLSEAPFEPE------------------------ 94 Query: 250 GSFSQVEKTAAAAAISYIKKTQ---MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL 306 G + A A ++Y ++TQ + +P Y D + + A LE+ L Sbjct: 95 GEGPLALRRARGALLAYAQRTQGGALSLQPFRFY----DPGAFXRLPEATLRALEVFEPL 150 Query: 307 SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK 366 G + +L +D + T G RL + PL D + RLD + F++ L +++ Sbjct: 151 RG--QDTLFSVLDETRTAPGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALREGVRR 208 Query: 367 ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK 426 +L D+ R +RL++GR PKD+ +R RS + IL ELR + + Sbjct: 209 LLYRLADLERLATRLELGRASPKDLGALR---RS-LQILP---------ELRALLGEEVG 255 Query: 427 LP--QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAE 484 LP L++ L + L +D P +GG +R+G D LD R+ + L+ + E Sbjct: 256 LPDLSPLKEELEAALVEDPPLKVSEGGLIREGYDPDLDALRAAHREGVAYFLELEERERE 315 Query: 485 ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLE 544 T I LK+ +N GY++EVT + K+ + QT+ + R+T E+ + E Sbjct: 316 RTGIPTLKVGYNAVFGYYLEVTRPYYERVPKE------YRPVQTLKDRQRYTLPEMKEKE 369 Query: 545 NRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP 604 + E E F + Q+E+L A++++A +D+ ALA +A Y RP Sbjct: 370 REVYRLEALIRRREEEVFLEVRERAKRQAEALREAARILAELDVYAALAEVAVRYGYVRP 429 Query: 605 IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 + ++ GRHP+VE+ + F+ ND + + +L L+TGPN GKS Sbjct: 430 RFGDRLQ--IRAGRHPVVERRTE------FVPNDLEXAH-------ELVLITGPNXAGKS 474 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 TFLRQ ALI ++AQ+GS+VPA AH+ + D +++R+G++D+LA G+STF VE E A IL Sbjct: 475 TFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFXVEXEEVALIL 534 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR 784 +AT S V+LDE+GRGT++LDG++IA A E LHE R L ATH+ ELT L L R Sbjct: 535 KEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYFELTAL--GLPR 591 Query: 785 FHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVI 829 N + + G++F H+V+PG A SYG++V AGLP V+ Sbjct: 592 LKNLHVAAREEAGGLVFYHQVLPGPASKSYGVEVAAXAGLPKEVV 636 >gi|225679256|gb|EEH17540.1| DNA mismatch repair protein mutS [Paracoccidioides brasiliensis Pb03] Length = 966 Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 256/883 (28%), Positives = 419/883 (47%), Gaps = 124/883 (14%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 + ++ R+G+FYEL+F+ A ++ L + L ++ + G +PM G P +++ L++ Sbjct: 95 NCVLLTRVGNFYELYFEQAEEYAKLLNLKLAQKKTNAGV-VPMAGFPYFQLERFLKILVQ 153 Query: 101 -IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAV--- 156 + +AI E+ + K + R V R+VTPGTL +++ + P ++N+L++V Sbjct: 154 DLNKYVAISEEYRNSEVEKAKSGGLQYDRKVARIVTPGTLIDEKFMDPFENNFLLSVYMA 213 Query: 157 ------ARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRI---DPREIIFSEKELSHA 207 I + +I S I I D+ ++ I D + +I S K Sbjct: 214 HTLPEETEILSPGQHPYISGSRSIV-IDVQVDDKFKQELQAIVGQDQKHLITSFK--CQD 270 Query: 208 EYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYI 267 + K+L + S+ ES I T D F+ E + + Y+ Sbjct: 271 QTKTLSDW--------------SSVFESPI-------TPDAASMFTTEEIASCNMLLEYV 309 Query: 268 K-KTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSITGA 325 + + VN + P R + ++ ID ++ LEIL T G + SLL + + T + Sbjct: 310 HFQIRGVNM-KLQAPRRRHLDQSMTIDRSSLKGLEILETARDGLGKGSLLHAVRRTSTKS 368 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 G RL +R+ SP IN RLD ++ F+ + L I +LK S D R + + +GR Sbjct: 369 GARLLRDRLTSPSASLHIINERLDLVSKFLADEDLRQNITLLLKRSYDSQRLVQKFSLGR 428 Query: 386 GEPKDIAVI-------RD--------------------------GIRSGINILNLFLKND 412 G+ D+ + RD G+RS ++ LNL Sbjct: 429 GDADDLICLSKTIQASRDIKDVLLQNIEGSDQPSDQEANPDVTRGLRSMLDRLNLNGLEA 488 Query: 413 LPEELRGAV---------------------------------EKLKKLPQSLEKTLSSML 439 L + + GA+ E L+ +P+ ++ + Sbjct: 489 LSKRILGAIDEEGLLQKQRIEDDAAAEAAALAQQVILNEGSPEDLEAMPKKIQDQYGAKQ 548 Query: 440 --SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 S+ + D +R A L E D + L L+ + NL +K Sbjct: 549 KESNGVEQSVGDAWIIRRDASEKLQELHDKLDYLNNEKSELTLELQDIAGTANLSLKWTP 608 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 LG+ + V + AS ++ +E+ + + + F L +I A I Sbjct: 609 ALGHIVHVKGTKAS--QQSVEALEGMRSVSSSKSTRSFYLSSWTQLGAQIGEAKEE---I 663 Query: 558 ELESFEILSNA---IIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 + E IL N +I L + V+ +D++ + A LAKEQ RP+I+N T+ + Sbjct: 664 KNEQQRILRNLREDVILNLVKLRRNAAVLDELDVACSFANLAKEQRMVRPVINNGTSHKI 723 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 GRHP V+ L++Q +PF++NDC + ++WL+TGPNM GKSTFLRQNALI Sbjct: 724 VGGRHPTVKLGLEEQG-RPFVSNDCFIG-----EQERIWLITGPNMAGKSTFLRQNALIT 777 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 I+AQ+GS+VPA +A IG+VD++FSR+G+AD+L +STFMVEM+ETA+IL AT SFVI Sbjct: 778 ILAQVGSFVPAEHAEIGVVDQIFSRIGAADDLFRNQSTFMVEMLETAAILKNATPHSFVI 837 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DE+GRGT DG ++ +A + +LH N+CR L ATHF+ L D++ +R + + Sbjct: 838 MDEVGRGTTPEDGTAVGYACLLHLHNVNQCRTLFATHFYALADMTAGFERLARYCTDLKE 897 Query: 795 SNEG-IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 G F H++ G+ S+ +++ +LAGLP +VI A D+L Sbjct: 898 DLSGSFSFDHRLRKGVNRRSHALKIARLAGLPESVIDVANDVL 940 >gi|255721321|ref|XP_002545595.1| hypothetical protein CTRG_00376 [Candida tropicalis MYA-3404] gi|240136084|gb|EER35637.1| hypothetical protein CTRG_00376 [Candida tropicalis MYA-3404] Length = 935 Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 271/905 (29%), Positives = 439/905 (48%), Gaps = 121/905 (13%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLT--KRGKHLGKDI 81 S TP+ ++ NP + ++G FYEL+F+ A + LGI L K H+ I Sbjct: 57 SLTPLFNTVKKLIDSNPGCVSLIQVGSFYELYFEQAEEYAPKLGIKLASKKTSNHI---I 113 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 P G PV + + LI H++ + + L +K + LV R + R++TPGTL + Sbjct: 114 PFAGFPVTQLKRFAEMLIH-DHKVNVAIVDQCSLGSKT--DSQLVHRKISRIITPGTLID 170 Query: 142 DQLLSPTDSNYLMAV----------ARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMR 191 + L+ ++NYL+++ A + ++WIDIS G + ++ +L SD+ R Sbjct: 171 ESFLNFNENNYLLSIYLPPNAVKLPADPDLQIGLSWIDISVGESFVQSTTLGQLSSDLSR 230 Query: 192 IDPREIIFSE----KELSHAEYKSLFETLGNVAVAQPNVF--------FDHSISESRIAD 239 I+P EI+ + KEL ++ + L ++ +V FD + + R Sbjct: 231 INPSEILMQKELQNKELHLGKWYGPLQELKRYSLRYHSVTMYSDLKQRFDSHVQKVR--- 287 Query: 240 YYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSN 299 F + E A +SYI + + P R ++ L +DS R Sbjct: 288 -------KHFEDLTVREHAALNMILSYISINLPDSNIVLDLPTRYVNENCLQMDSRTREA 340 Query: 300 LEIL-RTLSG--SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQ 356 LE+ RT+ G S SLL TI + T +G R+ + + SPL + +I R + F++ Sbjct: 341 LELTERTIVGRTSAVGSLLSTIKRTCTSSGTRMLTDWVKSPLLEIDEIKYRQKYVELFLK 400 Query: 357 NPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEE 416 N L ++ L D R+L RL IGRG D+A + I L L++ L EE Sbjct: 401 NDYLKIVTRQQLSQIGDFIRNLQRLVIGRG---DLATHLLHTAASIQKLQK-LRDFLSEE 456 Query: 417 ----------LRGAVEKLKKLPQSLEKTLSSMLS-------------------DDLPTFK 447 L+ +EK K +PQ + + + S++ D +P + Sbjct: 457 YNKKPKNAPVLKSFLEKFK-VPQEIAEEILSVIETEEVTSGDQTEGSDYVQEEDTVPAYG 515 Query: 448 RDGGF---------LRDGADASLDETRSLRDQSKRIIASLQ--LKYAE--ETKIKN---- 490 + ++ + D S+R + +L L+ E ET+ N Sbjct: 516 NLSSYGNNYSEKYRVKKTEENDHDTFYSVRKDYNEALRALHDDLEVLENKETQFVNDLRA 575 Query: 491 --------LKIKHNNNLGYFIE---VTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLE 539 L + +++G ++ ++ ++S+ K + ++ + MS L R Sbjct: 576 TLHDIDQKLTLSKKDSVGKYVNSILISGKTSSIEKASQKLSKDILYTKKMSLLYRPKKWN 635 Query: 540 LIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQ 599 DL++ I S LLIE E L +I++ ++++ +D++ + AI+A+E Sbjct: 636 --DLQHAINEKQASILLIEDEIMNELKQKVIQRFSEFRELARLVDFLDVTASFAIIAEEN 693 Query: 600 NYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPN 659 N+ P + + ++ GRH +VE +LKQ S FI ND + G LW+++GPN Sbjct: 694 NWVCPNLIKTPKLSIQGGRHVVVEFSLKQ-SGNMFIPNDSAMGA-----EGNLWVISGPN 747 Query: 660 MGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIE 719 MGGKSTFLRQNALIVI+AQ GSYVPA A IG+VD++F+R+G++D+L + STFMVEM+E Sbjct: 748 MGGKSTFLRQNALIVILAQTGSYVPADKATIGVVDRIFTRIGASDDLYNDMSTFMVEMVE 807 Query: 720 TASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHF-HELTDL 778 T++IL AT +S I+DEIGRGT+ +GL+IA+AT+ L N+CR L ATHF EL +L Sbjct: 808 TSNILKNATPRSLAIVDEIGRGTSGKEGLAIAYATLLGLLNDNKCRTLFATHFGKELQEL 867 Query: 779 ------SKSLKRFHNATLQVSDSNEG-IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISR 831 +S R+ + + EG I H + PGI++ S+ +QV K+AG P + Sbjct: 868 LVENSIDQSNIRYFRTRVITRGTVEGDFIIDHSLEPGISERSHALQVAKMAGFPENSLEI 927 Query: 832 AYDIL 836 A +L Sbjct: 928 AEKVL 932 >gi|330894627|gb|EGH27288.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. mori str. 301020] Length = 508 Score = 328 bits (840), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 194/530 (36%), Positives = 300/530 (56%), Gaps = 33/530 (6%) Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R L+R+ + P+D+A +RD + S + L + + L+ + P+ L L Sbjct: 2 RILARIGLRNARPRDLARLRDAL-SALPELQQAMTDLEAPHLQQLAQTASIYPE-LADLL 59 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + D+ P RDGG L+ G DA LD+ +SL + + + + L+ + T + NLK+ + Sbjct: 60 QRAIIDNPPAVIRDGGVLKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLANLKVGY 119 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GYFIE+ S A D +I RQT+ RF T EL + E++ +A + AL Sbjct: 120 NRVHGYFIELPSKQAEQAPAD------YIRRQTLKGAERFITPELKEFEDKALSAKSRAL 173 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 E +E L +I L + + +A +D+ LA A + P ++ Sbjct: 174 AREKMLYEALLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLDLNCPRFVADPCMRIE 233 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ L S PF+AND L +S ++ ++TGPNMGGKST++RQ ALIV+ Sbjct: 234 QGRHPVVEQVL----STPFVANDLALD-----DSTRMLVITGPNMGGKSTYMRQTALIVL 284 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 +A +GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V++ Sbjct: 285 LAHIGSFVPAASCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLM 344 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGT+T DGLS+AWA E L + R L ATH+ ELT L +S N L ++ Sbjct: 345 DEVGRGTSTFDGLSLAWAAAECLAQL-RAYTLFATHYFELTVLPESEPLVSNVHLNATEH 403 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYP 855 NE I+FLH+V+PG A SYG+ V +LAG+P VISRA + L+ E L + Sbjct: 404 NERIVFLHRVLPGPASQSYGLAVAQLAGVPGKVISRAKEHLQRLET--------TSLPHE 455 Query: 856 EIQTKESKNNLSKNDKLF-------VEKIKCLNLDEMSPLTALKTLYAVK 898 + + K K + + +F ++++ + +D+M+P AL LY ++ Sbjct: 456 QPRAKPGKPAVPQQSDMFASLPHPVLDELSKVKVDDMTPRQALDLLYTLQ 505 >gi|7243293|dbj|BAA92687.1| mismatch repair system component MutS [Pseudomonas putida] Length = 563 Score = 327 bits (839), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 203/576 (35%), Positives = 311/576 (53%), Gaps = 28/576 (4%) Query: 332 ERIASPLTDSTKINTRLD-SINF-------FIQNPILINPIQKILKSSPDVPRSLSRLKI 383 ++I P TD TKI D S+N +I+ + + ++ D +R+ + Sbjct: 4 QKIKVP-TDGTKITVNADHSLNVPDHPIIPYIEGDGIGVDVSPVMIKVVDAAVQKARIGL 62 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 P+D+A +RD + + + N + + P R A + L L + D+ Sbjct: 63 RNARPRDLARLRDALGALPELQNAMTELEAPHLARLAA--ITGTYPELASLLERAIIDNP 120 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P RDGG L+ G D LDE ++ + + + + L+ + T + NLK+ +N GYFI Sbjct: 121 PAVIRDGGVLKAGYDNELDEMLAISENAGQFLIDLEAREKARTGLANLKVGYNRVHGYFI 180 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 E+ + A D +I RQT+ RF T EL E++ +A + AL E ++ Sbjct: 181 ELPTKQAEQAPGD------YIRRQTLKGAERFITPELKAFEDKALSAKSRALAREKMLYD 234 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L +I L +++ +A +D+ I LA A + P + ++ GRHP+VE Sbjct: 235 ALLETLISHLAPLQDSAAALAELDVLINLAERALNLDLNCPRFVDEPCLRIEQGRHPVVE 294 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 + L + PF+AND L NS ++ ++TGPNMGGKST++RQ ALIV++A +GS+V Sbjct: 295 QVL----TTPFVANDLGLD-----NSTRMLIITGPNMGGKSTYMRQTALIVLLAHIGSFV 345 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V++DE+GRGT+ Sbjct: 346 PAASCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDRSLVLMDEMGRGTS 405 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 T DGLS+AWA E L + R L ATH+ ELT L +S N L ++ NE I+FLH Sbjct: 406 TFDGLSLAWAAAERLAQL-RAYTLFATHYFELTVLPESEPLVANVHLNATEHNERIVFLH 464 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL-YHHNQKDMRLYYPEIQTKES 862 V+PG A SYG+ V +LAG+P VI RA + L E H Q Q Sbjct: 465 HVLPGPASQSYGLAVAQLAGVPTAVIQRAREHLGRLETTSLPHEQPAAHKAKDAPQVPHQ 524 Query: 863 KNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + +EK+ L LD+M+P A++ LY +K Sbjct: 525 SDLFASLPHPAIEKLGKLQLDDMTPRQAIEMLYQLK 560 >gi|156847120|ref|XP_001646445.1| hypothetical protein Kpol_1048p17 [Vanderwaltozyma polyspora DSM 70294] gi|156117122|gb|EDO18587.1| hypothetical protein Kpol_1048p17 [Vanderwaltozyma polyspora DSM 70294] Length = 965 Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 267/905 (29%), Positives = 443/905 (48%), Gaps = 130/905 (14%) Query: 27 PMMRQYI-EIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 P QY+ E+ +++V +MG FYEL+F+ A + L I+LT R G +P G Sbjct: 92 PPSLQYVRELIDHYKENVVLTQMGSFYELYFEHATKYAPQLNISLTSRNYSRGV-VPFAG 150 Query: 86 VPVHTANHYIQKLIK-IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 PV + Y++ L+ G+ + I +Q + A NK R V R+VTPGT ++ Sbjct: 151 FPVSQLSRYLKVLVNDYGYSVVIAQQFKKDGIADNDVNK--FYRRVTRIVTPGTFIDEAF 208 Query: 145 LSPTDSNYLMAVA-------RIRTE---WAIAWIDISTGIFKISTSNHDRLISDIMRIDP 194 + ++YL+++ +I ++W D+STG + LIS + RI P Sbjct: 209 QNLQGNSYLLSIEFPENCMDKISNPDMLVGLSWCDVSTGELLVQQVTLKDLISAVTRIQP 268 Query: 195 REIIFSEKELSHA-EYKSLFETLGNVAVAQPNVFFDHSISESRIAD-YYNITTVD----- 247 +EI+ E+ + + E + L V + + + + S R D +Y + + Sbjct: 269 KEILLDEEIIKYKIESGDWYPEL--VELKKYFLKYQKLPSRHRTMDSFYPLFSSSECEST 326 Query: 248 ------TFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLE 301 S +Q E + + Y+ + P+R+ + S + IDS + LE Sbjct: 327 LKLLKIQLHSLAQKELASLRNLLIYVSEHLPDFSMNFEIPQRQSVTSIMQIDSRTSTALE 386 Query: 302 ILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL 360 + T+ GS+ SLL ++ ++T G R+ + ++ P D +I R + + +F +N + Sbjct: 387 LHATVRDGSKRGSLLSSLRRTVTPTGTRILTQWLSGPSLDLEEIKNRQNVVKYFKENTEV 446 Query: 361 INPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN-DLPEELRG 419 + +LKS D+ R L R G+G+ ++ + ++S I LK D+P Sbjct: 447 TRKLILMLKSMSDISRILQRFSFGQGDAMELLGLVKSLKSAKEIQQYLLKEIDIPG---- 502 Query: 420 AVEKLKKLPQSLEKTL--SSMLSDDLPTFKRDGG----FLRDGAD--------ASLDET- 464 +K KKL +++ L ++D++ T + +L+D D DE+ Sbjct: 503 --KKTKKLIKNIADGLVFDETITDEVLTCLNENAIKKFYLQDNLDEIDESDKNGDYDESA 560 Query: 465 -------------RSLRDQSKRII---ASLQLKYA----EETKIKNLKIKHNNNLGYFIE 504 R D+ + +I A+L+ Y +E +N+ +K + Y I Sbjct: 561 TSWMINPNYNENLRKWHDEYETLIQEKANLKNVYKSFFLDEYGARNIYLKQKQSSEYLIH 620 Query: 505 VTSSSA--------------------SVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLE 544 + SS+ +L+K +S R+++ + ++L +EL+ + Sbjct: 621 LMGSSSSLLKLNSFIGEERHLKEHPIKILQKSAQS--RWLYHKPWADLG--CKIELVQI- 675 Query: 545 NRITNATNSALLIELESFEILSNA---IIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 RI N EIL N + +S ++ S + +D+ ++ A LAKE+ Sbjct: 676 -RINQEEN----------EILRNIKKRFVNRSNNIRLISGKLGYLDVLLSFATLAKEKGL 724 Query: 602 CRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 P ID S + GRH +VE+ L S + F+ NDC LS G LW++TGPNMG Sbjct: 725 VCPKIDKSDKLEILGGRHIMVEEGLSSSSLEGFVKNDCTLS------EGDLWVITGPNMG 778 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKST+LRQNA++VI+AQ+G ++P + AHIG+VDK+FSRVGSAD+L + STFMVEMIET+ Sbjct: 779 GKSTYLRQNAIMVILAQIGCFLPCTSAHIGLVDKIFSRVGSADDLYNELSTFMVEMIETS 838 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHF--------H 773 IL ATN+S ILDEIGRGT+ +G SIA+AT++YL + NRCR L ATHF Sbjct: 839 FILQGATNRSLAILDEIGRGTSGKEGTSIAFATLKYLIKHNRCRTLFATHFGRELKAIID 898 Query: 774 ELTD--LSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISR 831 E D L + ++ F +++++++ + HK+ G+ +S I+V K AG P + Sbjct: 899 EQNDEILKRKIRFFKTGIVEMNETS--FYYDHKLKEGVCMNSDAIRVAKSAGFPEEALKD 956 Query: 832 AYDIL 836 A ++L Sbjct: 957 ANELL 961 >gi|241958512|ref|XP_002421975.1| DNA-binding protein of the mitochondria involved in repair of mitochondrial DNA, putative; MutS protein homolog, putative [Candida dubliniensis CD36] gi|223645320|emb|CAX39976.1| DNA-binding protein of the mitochondria involved in repair of mitochondrial DNA, putative [Candida dubliniensis CD36] Length = 923 Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 257/895 (28%), Positives = 436/895 (48%), Gaps = 108/895 (12%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P++ + NP + ++G FYEL+F+ A LG+ + K+ K +P G Sbjct: 50 SPLLASMKRLMDSNPGCVSLIQVGSFYELYFEQAEEYGPKLGLKIAKK-KTSNHVVPFAG 108 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P + + LI H + I + + N++LV R + R++TPGTL ++ L Sbjct: 109 FPTTQLRKFTEMLI---HEQQVNVAIIDQCDQGSKTNQNLVHRKISRIITPGTLIDESFL 165 Query: 146 SPTDSNYLMAVARI----------RTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPR 195 + ++NYL+A++ + + ++W DIS G + + L SDI RI+P Sbjct: 166 NFNENNYLVAISFAPNLLNLPPDPQMKVGLSWTDISVGESFVQLTTLGELSSDIGRINPS 225 Query: 196 EII----FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSIS---ESRIADYYNITTV-D 247 EI+ F + L ++ S L + HS + + ++ + NI V Sbjct: 226 EILLPKEFQDHNLHLGQWYSPLSELKRYIIRY------HSTTNYNDLKLQYHDNIQKVRK 279 Query: 248 TFGSFSQVEKTAAAAAISYIKKTQMVNKPTIG----YPEREDIQSTLFIDSAARSNLEIL 303 +FS E+ A +SY+ +N P + P R ++ L +DS R LE+ Sbjct: 280 HLETFSPREQAALNMIMSYMS----INLPDVDILMTLPTRYFNETCLQMDSRTRDALELT 335 Query: 304 -RTLSG--SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL 360 RT++G S S + I + T +G RL E + SP D I R + F++N L Sbjct: 336 ERTIAGRTSSVGSFVSVIKRTCTSSGTRLLTEWVKSPSLDIKDIEKRQSFVKMFLKNRHL 395 Query: 361 INPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDL---PEEL 417 ++ L+ D R+L +L IGRG+P + V G+ L FL + P+++ Sbjct: 396 KIVTRQHLQQLGDFIRNLQKLVIGRGDPVNQLVYAANTLDGLQKLRDFLVEEYEKSPQKM 455 Query: 418 RGAVEKLKK--LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRII 475 L+K +P++L + + + + D+ G + + + + + S + Sbjct: 456 SCLTNLLEKFDIPKNLAEKIYNTI--DIEERSVSGESTEEIEEPTEEYANTNSSYSNSFL 513 Query: 476 ASLQLKYAEETKIKN-----------LKIKHN---------NNL---------------- 499 +LK E +N LK+ HN N L Sbjct: 514 EKYRLKEEENGDAENFYSVKRDFNDELKVLHNELSDLETEENKLWSKLRNALDDIDGKLN 573 Query: 500 ----GYF------IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 G F I ++ ++S+ K + ++ + MS + R + E ++++ I + Sbjct: 574 IVKRGIFGRYNNVILISGKTSSINKASAKLDGDILYAKKMSLVYR--SKEWNEIQHLILD 631 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 + LL+E + E L + + ++ + + +D++ +LAI+A + N+ P + S Sbjct: 632 KKEAILLVERKIIEELKSEVTQRFPEFRELAGLADFLDVTSSLAIVADQNNWTCPKLIKS 691 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 ++ GRH +VE +LK S FI ND + G LW+++GPNMGGKST+LRQ Sbjct: 692 PRLSIEGGRHVVVESSLKD-SGNMFIPNDSKMGT-----DGTLWVISGPNMGGKSTYLRQ 745 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 NALIVI+AQ+GS+VPA A IG+VDK+F+R+G+ D+L + STFMVEM+E ++IL AT+ Sbjct: 746 NALIVILAQIGSFVPAERATIGLVDKIFTRIGATDDLFNDLSTFMVEMVEVSNILTNATS 805 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHF-HELTDL-------SKS 781 S I+DEIGRGT+ +GL+IA+AT+ L + NRCR L ATHF EL L K+ Sbjct: 806 SSLAIVDEIGRGTSGKEGLAIAYATLLSLLQVNRCRTLFATHFGKELEQLLVANNIDQKN 865 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 ++ F L+ S++ +G + H + PGI++ S+ + V ++AG P ++ A ++L Sbjct: 866 IRYFRTRVLESSNNGKGFVIDHTLEPGISERSHALDVARMAGFPENALTVAEEVL 920 >gi|289670351|ref|ZP_06491426.1| DNA mismatch repair protein MutS [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 659 Score = 324 bits (831), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 206/645 (31%), Positives = 343/645 (53%), Gaps = 36/645 (5%) Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y+++TQ P + E + +++A R +LE+ + G +LL +D ++T Sbjct: 38 YVEETQKQRLPHLTSIAMEVASEAISMNAATRRHLELDTRVDGDTRNTLLGVLDSTVTPM 97 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 GGRL + PL + R ++ I + +++ ++ D+ R L+R+ + Sbjct: 98 GGRLLRRWLHRPLRLRDVLVQRHHAVGTLIDAGADAD-LREAFRALGDLERILTRVALRS 156 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSL---EKTLSSMLSD- 441 P+D + +RDG+ + + D P +L+KL L + T ++S Sbjct: 157 ARPRDFSTLRDGLALLPKVRTILAPLDSP--------RLQKLHAELGEHDATAHLLISAV 208 Query: 442 -DLPTFK-RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 ++P K DGG + G DA LDE R L + + + L+ + + I LK+ +N Sbjct: 209 AEMPPLKLSDGGVIATGYDADLDELRRLSTNADQFLIDLEQRERASSGIATLKVGYNRVH 268 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+IE++ A ++ + RQT++N R+ T EL E+++ +A +L E Sbjct: 269 GYYIEISKGQAE------KAPLHYSRRQTLTNAERYITEELKSFEDKVLSARERSLSREK 322 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 +E L +A+ + E L + ++ +D+ A A+ ++ +P +D++ ++ GRH Sbjct: 323 LLYEGLLDALGTELEGLKRCAGALSELDVLAGFAERAQALDWSQPELDSAPCLRIERGRH 382 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE Q PF ND DL +D+ ++ ++TGPNMGGKST++RQNALIV++A + Sbjct: 383 PVVEAVRDQ----PFEPNDLDLH--SDR---RMLVITGPNMGGKSTYMRQNALIVLLAHI 433 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPAS A IG +D++ +R+G+ D+LA G+STFMVEM ET+ IL+ AT QS V++DEIG Sbjct: 434 GSYVPASRAVIGPIDRILTRIGAGDDLARGQSTFMVEMAETSYILHHATPQSLVLMDEIG 493 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK-----SLKRFHNATLQVSD 794 RGT+T DGL++A A +L TNRC L ATH+ ELT L+ N L + Sbjct: 494 RGTSTYDGLALADAVARHLAHTNRCYTLFATHYFELTALADESHAGGASGIANVHLDAVE 553 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYY 854 E ++F+H V G A+ S+G+QV LAGLP +++A L E+ + ++ Sbjct: 554 HGERLVFMHAVKDGPANRSFGLQVAALAGLPKAAVTQARRRLVELEQRGGESHS-AQMAP 612 Query: 855 PEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + + + E ++ L+ DE++P AL+ LY +KA Sbjct: 613 TALDAPQQFGLFTAPSSAAQEALQALDPDELTPKQALEALYRLKA 657 >gi|330800615|ref|XP_003288330.1| hypothetical protein DICPUDRAFT_55353 [Dictyostelium purpureum] gi|325081628|gb|EGC35137.1| hypothetical protein DICPUDRAFT_55353 [Dictyostelium purpureum] Length = 979 Score = 324 bits (831), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 247/873 (28%), Positives = 436/873 (49%), Gaps = 116/873 (13%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P RQ+ +IKS D++VF++ G FYEL+ +DA + + L + +T R ++ M G Sbjct: 96 SPFERQFWDIKSKYYDTVVFFKKGKFYELYENDADIGHQILHLKMTDR-----VNMRMVG 150 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNK--------SLVRRNVVRLVTPG 137 VP H+ KLI +G+++A +Q+E+ + KR N+ S+++R + ++T G Sbjct: 151 VPESAFTHWASKLINLGYKVAKVDQMETSIGMNKRQNEKGGRNKKDSIIQRELTSILTAG 210 Query: 138 TLTEDQLLSPTDSNYLMAVAR--IRTEWAIAWIDISTGIFKISTSNHD----RLISDIMR 191 TL ++ ++S S YLMA+ ++ + ++D+S G F + + + D + + +++ Sbjct: 211 TLLDESMISDKTSTYLMAIKEDEYSNKYGVCFVDVSIGEFFLCSIDDDENRMQFETLLLQ 270 Query: 192 IDPREIIFSEKELSHAEY---KSLFETLGNVAVAQPNV-FFDHSISESRIADYYNITTVD 247 + P+E+++ + +S K + T+ V A+ ++ ++D S + +R+ D Sbjct: 271 MMPKEVVYEKGAISAKTMSIMKRVLATVKPVMNARLSLEYWDPSETLNRVND-------- 322 Query: 248 TFGSFSQVEK---------TAAAAAISYIK----KTQMVNKPTIGYPEREDIQSTLFIDS 294 + G + K + +SY+ Q++ + D+ ++L +D Sbjct: 323 SCGRIPESLKEMKNETLLICSLGGCLSYLSDIKIAQQVLEQGRFKRFNSLDVGNSLILDG 382 Query: 295 AARSNLEILR-TLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINF 353 NLEI + G+ E +L K +D +T G RLF + I PL + +I R +I Sbjct: 383 QCLVNLEIFNNSTDGTTEGTLFKLMDRCVTSFGKRLFRQWICRPLANKERIVDRQRAIEH 442 Query: 354 FIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDL 413 NP + + IL PD+ R L+R++ G + D+ I++LN F Sbjct: 443 LRDNPDHLQKVISILTKIPDLERMLARIRAGSSKIADL----------ISVLNHF----- 487 Query: 414 PEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLD----------E 463 E + +E+ +K + E+ + P R +++ D E Sbjct: 488 -EAIHSKLEEFEKKMEDFEQEQINGNYSGYPNLLRYITTIKESFKVEQDKIIPSKGLFKE 546 Query: 464 TRSLRDQSKRIIASLQLKYAEET---KIKNLKIKHNNNLGYFIEVTSSS--ASVLKKDLE 518 + + ++I SL+ E+ +N++ KH Y IEV S+ + L K+ + Sbjct: 547 FDECQKKIQQIEQSLEEHLTEQKTYFSCRNIEFKHMGKEIYQIEVPVSALNRAKLPKNYQ 606 Query: 519 SKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSES--- 575 K + R+ T +I+ T +LL E + E+LS + ++ ++ Sbjct: 607 LKSK------TKAACRYHTPFIIE--------TLPSLLEERDELEVLSKEVSKKIQANFS 652 Query: 576 -----LDNASQVIAIIDISIALAILAKEQ--NYCRPII-----DNSTNFI-VKDGRHPIV 622 A Q +A +D ++L ++ + CRPI N+ F+ V+D RHP + Sbjct: 653 VYFNHFSKAVQRLAQLDCLLSLFKVSCQSGIQMCRPIFVSKIPTNNGGFLDVRDMRHPCI 712 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 ++ FI ND L+ N S + +LTGPNMGGKST LRQ ++VIMAQMG + Sbjct: 713 ----YSKAGDDFIPNDLSLNVENSPPS--ILVLTGPNMGGKSTLLRQACILVIMAQMGCF 766 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 V AS + IVD++F+R+G+ DN+ +G+STFMVE+ ET S+L ATN+S VILDE+GRGT Sbjct: 767 VSASSCEMSIVDRIFTRLGANDNILAGQSTFMVELQETCSVLKYATNRSLVILDELGRGT 826 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA---TLQVSDSNEGI 799 +T DG SIA++ + Y+ + + + ATH+ L + S++ + T QV + + + Sbjct: 827 STFDGYSIAYSVLNYITKNLKSLCIFATHYQSLA-MEPSIRNEISTGYMTCQVDEEEKRV 885 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 IFL+K+ GI SYG+ V +AGLP ++++A Sbjct: 886 IFLYKLAKGICQKSYGLHVAAMAGLPKEIVAKA 918 >gi|68072659|ref|XP_678243.1| DNA repair protein [Plasmodium berghei strain ANKA] gi|56498644|emb|CAH98713.1| DNA repair protein, putative [Plasmodium berghei] Length = 1090 Score = 323 bits (829), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 260/923 (28%), Positives = 445/923 (48%), Gaps = 117/923 (12%) Query: 5 FSSPQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASR 64 ++ PQ Q +E TP M+Q+ +IKS N D ++F++MG FYE+F+ DA + Sbjct: 162 WTPPQ---DHQWAIEYKQAHYTPGMQQFWKIKSKNFDKIIFFKMGRFYEIFYIDACIMHT 218 Query: 65 CLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKS 124 G+ G+ P G P + + Y +K+I GH++ + EQ+E+P E ++R S Sbjct: 219 ICGLNWMN-----GEQKPHLGFPEQSLHLYAKKVINSGHKVVVIEQMETPKELEQRNKTS 273 Query: 125 ------LVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAV---------------ARIRTEW 163 ++R + + T GT+ D +LS ++ Y++ ++ R + Sbjct: 274 SGPKDKAIKREINEIYTKGTILHDNMLS-AETKYIICFHFDDIEDIEDDNNTGSQNRCNF 332 Query: 164 AIAWIDISTGIFKISTSNHDR----LISDIMRIDPREIIFSEKELSHAEYKSLFETLGNV 219 D++T + N D L + + ++ P EI++ K +S E S+F+ + Sbjct: 333 GFVVSDVATSYISVGYCNDDESRIELRTLLAQLCPAEILYCSKNIS-KEVLSIFKNIPTC 391 Query: 220 A-VAQPNVFFDHSISESRIADYY-NI-TTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKP 276 + N F + S + Y+ NI ++ + + V A I Y++ + +++K Sbjct: 392 PELTSVNSFPNIIASLDEVNKYFENIPKALEAYKEQNSV-ICAFGGFIVYLR-SLLLDKK 449 Query: 277 TIGYPERE--DI---QSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFA 331 + + + E D+ + + +D+ A +LEIL T SG + SL ++ + T G R Sbjct: 450 ILKFCKIEFYDLFKKDNYMVLDATALKHLEILETQSGETKNSLYDYVNKTCTNFGARNMR 509 Query: 332 ERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDI 391 + SPL + KIN RLD + F +N +++ I+ LK PD+ R L+++ I + + Sbjct: 510 RWVCSPLLNCDKINQRLDVVEFLRKNDHILSLIRLKLKKLPDIERLLNKICIQASQSERG 569 Query: 392 AVIRDGI-----RSGINILNLFLK--------NDLPEELRGAVEKLKKLPQSLEKTLSSM 438 AV D I + + LN F + N + E +L ++ + K + Sbjct: 570 AVFFDNIVNTKLKEFVTFLNAFKEIDNMLIEINSIDNEEDLIPTRLFEITNTYNKISKNN 629 Query: 439 LSDDLPTF-KRDGGFLR-------------DGADASLDETRSLRDQSKRIIASLQLKYAE 484 + + P K FL +G D ++D ++ + ++ + + Sbjct: 630 IKGNYPEIDKITNEFLEKIYFDGEKEYKPAEGCDEAIDAINKKEKDIEKELNNILVDMKK 689 Query: 485 ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLE---SKDRFIHRQT--MSNLTRFTTLE 539 KI NLK H Y IE + K++E K FI Q + NL Sbjct: 690 NFKIPNLKYVHAK-YKYEIECPDNVPKSFLKEVEITSVKKGFIRIQNEEIKNLVEM---- 744 Query: 540 LIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQ 599 L D+E +A F+ + + E E +A ++I+ +D A A +A Sbjct: 745 LEDIEQEKKDAI-------YPFFQKIFHLFYEHYEKYISACRLISELDCLQAFAYVALNT 797 Query: 600 NY--CRPII---------------DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLS 642 ++ RPI+ + I+++ HP+V + FI N+ + Sbjct: 798 SFPLTRPILHFMEYRKMGSEHASKEKKPFLILENNIHPVVATLMPN-----FIPNNIYMG 852 Query: 643 CPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGS 702 C DK LLTGPNMGGKST LRQ A+ VI+AQ+G++VP++Y + IVDK+F+R+GS Sbjct: 853 C--DKEKETTLLLTGPNMGGKSTLLRQTAISVILAQIGAFVPSTYCELTIVDKIFTRLGS 910 Query: 703 ADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETN 762 +DNL G+STF+VE+ + +++L Q+T S ILDE+GRGT++ DG +IA +T+E + +T Sbjct: 911 SDNLFEGKSTFLVELEDISNLLKQSTKYSLAILDELGRGTSSFDGTAIALSTLEQISDTI 970 Query: 763 RCRGLLATHFHELTDLSK---SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVG 819 +CR + +TH+H L + K ++ +H +L + D E IIFL+K I GI S+GI + Sbjct: 971 KCRCIFSTHYHLLVEEVKHNTNISNYH-MSLSIDDDQEKIIFLYKFIKGICPKSFGIHIA 1029 Query: 820 KLAGLPNTVISRAYDILKTFEKL 842 KLAGLP +I A++ FE + Sbjct: 1030 KLAGLPKEIIELAHEKSLLFENV 1052 >gi|295665344|ref|XP_002793223.1| DNA mismatch repair protein mutS [Paracoccidioides brasiliensis Pb01] gi|226278137|gb|EEH33703.1| DNA mismatch repair protein mutS [Paracoccidioides brasiliensis Pb01] Length = 973 Score = 323 bits (828), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 253/852 (29%), Positives = 404/852 (47%), Gaps = 113/852 (13%) Query: 81 IPMCGVPVHTANHYIQKLIK-IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 +PM G P +++ L++ + +AI E+ + K + R V R+VTPGTL Sbjct: 113 VPMAGFPYFQLERFLKILVQDLNKYVAISEEYRNDEAEKAKSGGLQYDRKVARIVTPGTL 172 Query: 140 TEDQLLSPTDSNYLMAVARIRT---EWAIAWIDISTGIFKISTSNHDRLISDIMRIDPRE 196 +++ + P+++N+L++V T E I + I S S L S I RI+ RE Sbjct: 173 IDEKFMDPSENNFLLSVYMAHTLPEETEILSPEQHPYISG-SRSVAQMLPSAITRINARE 231 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVF--FDHSISESRIADYYNI----TTVDTFG 250 I+ + + K E V Q ++ F ++D+ ++ T D Sbjct: 232 IVID----LNVDDKFKQELQAIVGQDQKHLLTSFQCQDQTKTLSDWSSVFESPITPDAAS 287 Query: 251 SFSQVEKTAAAAAISYIK-KTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SG 308 +F+ E + + Y+ +T+ +N + P R + ++ ID + LEIL T G Sbjct: 288 TFTTEETASCNILLEYVHFQTRGMNM-KLQVPRRRHLDQSMTIDRNSLKGLEILETARDG 346 Query: 309 SREQSLLKTIDYSITGAGGRLFAERI-------------ASPLTDSTKINTRLDSINFFI 355 + SLL + + T +G RL +R+ ASP IN RLD ++ F+ Sbjct: 347 LGKGSLLHAVRRTSTKSGARLLRDRLSMDFVLRLLLAPAASPSASLHIINERLDLVSKFL 406 Query: 356 QNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKD-------IAVIRD------------ 396 + L I +LK S D R + + +GRGE D I V RD Sbjct: 407 ADEDLRQNITLLLKRSYDSQRLVQQFSLGRGEADDLICLSKTIQVSRDIKDILLQNIESS 466 Query: 397 -------------GIRSGINILNLFLKNDLPEELRGAV---------------------- 421 +RS ++ LNL L + + GA+ Sbjct: 467 DRPSDQEANPVTHSLRSMLDRLNLDGLETLSKRILGAIDEEGLLQKQRIEDDAAAEAAAL 526 Query: 422 -----------EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGF--LRDGADASLDETRSLR 468 E L+ +P+ ++ + + + DG +R A L E Sbjct: 527 AQQVIFNEGSPEDLEAMPKKIQGQCGAKQKESNEVEQSDGDVWVIRRDASEKLQELHDKL 586 Query: 469 DQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQT 528 D + L LK + T NL +K LG+ + V + AS ++ +E+ + Sbjct: 587 DYLNNEKSELTLKLQDITGTDNLSLKWTPALGHIVHVKGAKAS--QQTVEALKELQSVSS 644 Query: 529 MSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNA---IIEQSESLDNASQVIAI 585 + F L RI A I+ E +L N +I L + V+A Sbjct: 645 SKSTRSFYLSSWTQLGARIGEAKEE---IKTEQQRVLRNLREDVILNLVKLRRNAAVLAE 701 Query: 586 IDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPN 645 +D++ + A LA+EQ RP+I+N T+ + GRHP V+ L++Q +PF++NDC + Sbjct: 702 LDVACSFANLAEEQRMVRPVINNGTSHKIVGGRHPTVKLGLEEQG-RPFVSNDCFIG--- 757 Query: 646 DKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADN 705 ++WL+TGPNM GKSTFLRQNALI ++AQ+GS+VPA +A IG+VD++FSR+G+AD+ Sbjct: 758 --EQERIWLITGPNMAGKSTFLRQNALITLLAQVGSFVPAEHAEIGVVDQIFSRIGAADD 815 Query: 706 LASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCR 765 L +STFMVEM+ETA+IL AT+ SFVI+DE+GRGT DG ++ +A + +LH N+CR Sbjct: 816 LFRNQSTFMVEMLETAAILKNATSHSFVIMDEVGRGTTPEDGTAVGFACLRHLHNVNQCR 875 Query: 766 GLLATHFHELTDLSKSLKRFHNATLQV-SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGL 824 L ATHF+ L D++ +R + DS+ F H++ G+ S+ +++ +LAGL Sbjct: 876 TLFATHFYALADMTAGFERLARYCTDLKEDSSGSFSFDHRLRKGVNRRSHALKIARLAGL 935 Query: 825 PNTVISRAYDIL 836 P +VI A D+L Sbjct: 936 PESVIDVAKDVL 947 >gi|167999243|ref|XP_001752327.1| predicted protein [Physcomitrella patens subsp. patens] gi|162696722|gb|EDQ83060.1| predicted protein [Physcomitrella patens subsp. patens] Length = 1960 Score = 323 bits (828), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 266/906 (29%), Positives = 440/906 (48%), Gaps = 128/906 (14%) Query: 3 KEFSSPQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYEL-------- 54 K+ + ++L+S + NL +PMMRQY+E K P L+ R+GDFYE+ Sbjct: 850 KQRRAKEQLHSSSV----NLSFLSPMMRQYVETKRQRPKFLLLSRVGDFYEVLISPDPGM 905 Query: 55 ---FFDDA-LLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQ 110 FF+DA LA C +I + GV G ++ Sbjct: 906 HMAFFEDAERLAHAC--------------NIRLSGVD--------------GGKVTA--- 934 Query: 111 IESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAV---ARIRTEWAIAW 167 A +G +++ R V ++TPGTL ++ +L + SN+L+++ A W +A+ Sbjct: 935 ------ADTKGG-TIIDRQVTAVLTPGTLLDEAMLEDSCSNFLVSIFPHADENGTWGLAY 987 Query: 168 IDISTGIFKISTSNHDR--LISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAV---- 221 DISTG F+ +T R L+ ++ R+ P EIIF + + K+ E L + + Sbjct: 988 ADISTGEFQ-ATQGQGRSSLLHELQRLQPSEIIFPANVVCTVDKKT--EILRPIGMPSEI 1044 Query: 222 ---AQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAAAAAISYIKKTQMVNKPT 277 ++P F + +E R+ + ++ FG S AA + YI++TQ ++ Sbjct: 1045 CYSSRPTSEFFPAAAEKRLHASFGEESLKAFGVPRSSHAIRAAGGLLGYIQETQKLSNEE 1104 Query: 278 IGYPEREDIQSTLFIDSAARSNLE--ILRTLSGSR-EQSLLKTIDYSITGAGGRLFAERI 334 I +QS F + +++ +L+T + E SL+ +D+S T G RL + Sbjct: 1105 I------PLQSPSFYSTLDTMHMDDTLLKTSRWDKAEGSLVWALDHSQTAMGSRLLRRWL 1158 Query: 335 ASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVI 394 PL D I R D++ F N + + + L DV R +R+ R + +D+ + Sbjct: 1159 LWPLIDHELICRRQDAVQVFFHNHEMRSEFRSKLAHVSDVERIAARIAWKRADSRDLLTL 1218 Query: 395 RDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLR 454 I+ ++ L L A + Q K + +M++++L + G ++ Sbjct: 1219 AQSIKCLPSLAELIEGASLNSYFVAASQIPTTAVQWANK-VENMIAEELGNGLQSGKLVK 1277 Query: 455 DGADASLDETRSLRDQSKRIIASLQLKYAEETKIK----NLKIKHNNNLGYFIEVTSSSA 510 +G D +LD LR + + + L++ Y E+ +++ +L++ N N G+FI + + Sbjct: 1278 EGVDPTLD---VLRQKVQENMIWLEM-YEEQERLRIGIPSLEVGFNKNSGHFISIRKNK- 1332 Query: 511 SVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAII 570 LK+D D + Q++ RF T EL++ E+ + A E E L ++ Sbjct: 1333 --LKEDCIPND-YQKLQSLKAEERFVTPELLNCESSLLAAEAKVFEREEELLRSLKEELV 1389 Query: 571 EQSESLDNASQVIAIIDISIALAILAKEQNYCRP-IIDNSTNFIVKDGRHPIVEKTLKQQ 629 E + SQ +A +D+ A LA ++YCRP +++ + +GRHP+VE +L Sbjct: 1390 SLLEPVREYSQTVAALDVLCTFAELAVNRDYCRPHMLEKGREITIIEGRHPVVELSLPDD 1449 Query: 630 SSKPFIANDCDLS-------CPNDKNSG-------------------KLW------LLTG 657 S F+ N L P + G K W LLTG Sbjct: 1450 SR--FVPNSVYLGFDVITEKIPATERYGLGEKLDGAEAMEELTVESEKWWPRADLVLLTG 1507 Query: 658 PNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEM 717 PN GKS +LRQ LI ++AQ GS+VPA +A + I D +++RVG+ D+LA+G+STF +EM Sbjct: 1508 PNASGKSCYLRQLGLIQLIAQSGSFVPAKFARLSIADGVYTRVGAVDDLAAGQSTFRIEM 1567 Query: 718 IETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTD 777 +E+A+ILN+AT S V+LDE+GRGT++ +G IA A IEYL + R R + +TH+H+L Sbjct: 1568 VESANILNRATAHSLVLLDEVGRGTSSQEGGVIARAIIEYLSQIVRARTIFSTHYHDLHI 1627 Query: 778 LSKSLKRFHNATLQVSDSNEG-IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 L + N Q ++ + G +IF H V+PG A S+ I +G+ AGLP+ V SRA ++L Sbjct: 1628 LDQDYPNVANYHFQATELDNGEVIFDHAVMPGYAIKSHAIAIGRSAGLPDWVCSRATELL 1687 Query: 837 KTFEKL 842 E L Sbjct: 1688 ALEEGL 1693 >gi|300814716|ref|ZP_07094966.1| MutS domain V protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511189|gb|EFK38439.1| MutS domain V protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 430 Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 177/437 (40%), Positives = 276/437 (63%), Gaps = 16/437 (3%) Query: 461 LDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESK 520 LDE S +++ K I + + K E+T IKNL+IK+N LGYFIEVT S+ S + D Sbjct: 3 LDELFSAKEEGKDWILNFEKKEKEKTGIKNLRIKYNKILGYFIEVTKSNISQIPSD---- 58 Query: 521 DRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNAS 580 +I +QT+ R+ ++EL ++E+++ + + AL ++ + L N ++E N S Sbjct: 59 --YIRKQTLVGSERYFSVELKEMESKLLVSKDEALRLQSKILSELKNFLLENIIKFQNLS 116 Query: 581 QVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCD 640 ++I+ ID+ ++L+ +++ NY RP+++ +K GRHPIVE+ K + F+ ND Sbjct: 117 KIISAIDVLVSLSEVSRRNNYKRPLLNKEGLIDIKKGRHPIVEENYKDE---LFVPNDTY 173 Query: 641 LSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRV 700 L DKN + ++TGPNM GKST++RQ ALI IMA +GS+VP YA+I ++D++F+R+ Sbjct: 174 LDL--DKNL--IHIITGPNMAGKSTYMRQVALITIMAHIGSFVPCEYANISVLDRIFTRI 229 Query: 701 GSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHE 760 G++DNLA G+STFMVEM E A+I++ A+ S +ILDE+GRGT+T DGLSIA+A +EY+ Sbjct: 230 GASDNLAMGQSTFMVEMKEVANIIDNASKNSLLILDEVGRGTSTYDGLSIAYAILEYIAT 289 Query: 761 TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGK 820 + + L ATH+HEL L + N ++ V E IIFL K+I G ++HSYGI V K Sbjct: 290 NLKAKTLFATHYHELCSLEEKYPSISNLSIAVKKEEEDIIFLRKIINGPSNHSYGIDVAK 349 Query: 821 LAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCL 880 LAG+ + +I RA+DIL + E N+ + + K + K DK F+EK+K + Sbjct: 350 LAGIDDFIIKRAWDILNSLENNKGKNKLNKNFKIDNFEQKSIFD--IKKDK-FIEKVKNI 406 Query: 881 NLDEMSPLTALKTLYAV 897 +++ +SP+ A K L + Sbjct: 407 DINNLSPMDAFKMLNGI 423 >gi|317060228|ref|ZP_07924713.1| DNA mismatch repair protein mutS [Fusobacterium sp. D12] gi|313685904|gb|EFS22739.1| DNA mismatch repair protein mutS [Fusobacterium sp. D12] Length = 518 Score = 322 bits (826), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 177/474 (37%), Positives = 290/474 (61%), Gaps = 19/474 (4%) Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L++ +++ +S + P R+GG R LDE R + K I+ ++ + E+T IK Sbjct: 51 LQEEIANSISSEAPFSIREGGIFRTSYHKELDELRHIASSGKEILLEIEAREREKTGIKT 110 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LKIK+N GYFIEV+ ++ ++ +I +QT+ N R+ EL + E+RI NA Sbjct: 111 LKIKYNKVFGYFIEVSKANEHLVP------SHYIRKQTLVNSERYIVEELKEYEDRILNA 164 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 +E F+ I E+ E L ++ ++ +D+ + A +A +++Y RP + Sbjct: 165 KTKIENLEYYLFQEFVGKIKEKKEELLELAKQLSFLDVMTSFAQVAIQKSYVRPEVLEED 224 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 ++ GRHPIVE + + S ++ ND + ++ +LTGPNM GKST+++Q Sbjct: 225 ILEIRGGRHPIVESLIPKGS---YVKNDLYFD-----RTERMMVLTGPNMSGKSTYMKQI 276 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI+I+AQ+GS+VPA +A IGIVDK+F+R+G++D+L +G+STFMVEM E A+I++ AT + Sbjct: 277 ALIIILAQVGSFVPADFAKIGIVDKIFTRIGASDDLLTGQSTFMVEMSEVANIVHNATEK 336 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 SF+ILDEIGRGT+T DG+SIA A EY+H R + + ATH+HELT+L K L+ N + Sbjct: 337 SFIILDEIGRGTSTFDGISIATAITEYIHSHIRAKTIFATHYHELTELEKKLELVKNYRI 396 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM 850 +V + + ++FL +++ G AD SYGI+V KL+GLP +++ R+ IL EK +K M Sbjct: 397 EVRERGKEVLFLREIVQGGADKSYGIEVAKLSGLPQSILKRSKQILSRLEKQKALVEKKM 456 Query: 851 R-----LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + L+ E +E + ++ +E+I+ +++++M+PL AL L ++K Sbjct: 457 QGEQMMLFQSEEMEEEEEAEFHIEEQSVLEEIRNVSIEQMTPLQALVLLQSLKG 510 >gi|67522044|ref|XP_659083.1| hypothetical protein AN1479.2 [Aspergillus nidulans FGSC A4] gi|40745453|gb|EAA64609.1| hypothetical protein AN1479.2 [Aspergillus nidulans FGSC A4] gi|259486798|tpe|CBF84949.1| TPA: DNA-binding protein of the mitochondria (Eurofung) [Aspergillus nidulans FGSC A4] Length = 924 Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 255/848 (30%), Positives = 411/848 (48%), Gaps = 104/848 (12%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 + +V R+G FYEL+F+ A + L + L + G +PM G P + +++ L++ Sbjct: 108 NCVVLTRVGGFYELYFEQAEELAPLLNLKLATKKTSAGP-VPMAGFPFFQLDRFLKILVQ 166 Query: 101 -IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAV--- 156 + +AI E+ E K R L R V R++TPGTL +++ + P+++N+LMA+ Sbjct: 167 DLNKFVAISEEFAISAEEKARSGM-LFDRKVARVITPGTLIDEKFMDPSENNFLMAIYLN 225 Query: 157 -------ARIRTE-------------WAIAWIDISTGIFKISTSNHDRLISDIMRIDPRE 196 AR E +AW+D+STG F ++ L S I RI RE Sbjct: 226 PSDLGMHARGSDESSYQHILTSASQNVGLAWLDLSTGDFYTQSTTAQMLPSAIARIGARE 285 Query: 197 IIFSEK--ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNI-------TTVD 247 I+ ++ +L+ E + L +G+ F IS ++D+ ++ T++D Sbjct: 286 ILVDQRLQDLAGQELQLL---IGHEHRLMTCFSFPEKISP--VSDWASMLEAPLPSTSID 340 Query: 248 TFGSFSQVEKTAAAAAISYIK-KTQMVNKPTIGYPEREDIQSTLFID------------- 293 +FSQ E A + + YI+ + Q +N + P R + ++ ID Sbjct: 341 ---AFSQEEVAAGYSLLEYIRVQLQGLNL-KLQPPRRRHLNESMSIDLQLLKRSYDAQRL 396 Query: 294 ----SAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLD 349 + + + + L LS S E S K + ++ A AS + +D Sbjct: 397 VQKFTLGKGDADDLICLSKSIEAS--KNVKRLLSAASN-------ASSEYSRKSLQKMVD 447 Query: 350 SINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFL 409 + ++ P L+ KIL S+ D L + +I + A++ + LN Sbjct: 448 QL--YLDGPTLL--ADKIL-SAIDEEGLLQKQRIEEDTAAEAAILAQEV-----TLN--- 494 Query: 410 KNDLPEELRGAVEKLKKLPQSL-EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLR 468 GA L LP+ + EKT +D+ + + +R A +L E Sbjct: 495 --------EGAAADLASLPKKVREKTTERTATDE--SSPDETWIMRRDASPALKELHRTL 544 Query: 469 DQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQT 528 D+ + + L + + +K LG+ V A V ++ LE + + Sbjct: 545 DELQNEKSKLGQYLRDSVGSSAITLKWTPGLGHICHV--KGAKVSQQQLEDIGVTRNVSS 602 Query: 529 MSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDI 588 + F +L R+ E FE L +I + + V+ +D+ Sbjct: 603 TKSTRSFYLPAWTELGGRMDQIKVQIRQEEQAIFEQLRREVILNLVKIRRNASVMDELDV 662 Query: 589 SIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKN 648 + + A LA EQ RPI+ TN+ + GRHP V+ L++Q + F++NDC L Sbjct: 663 ACSFATLAAEQQLVRPILTEGTNYKIIGGRHPTVKLGLEEQGRR-FVSNDCFLG-----E 716 Query: 649 SGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLAS 708 S ++WL+TGPNM GKSTFLRQNALI I+AQ+GS+VPA YA IGIVD++FSR+G+AD+L Sbjct: 717 SERIWLITGPNMAGKSTFLRQNALITILAQVGSFVPADYAEIGIVDQIFSRIGAADDLFR 776 Query: 709 GRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLL 768 +STFMVEM+ETA+IL QAT +SFVI+DE+GRGT DG ++++A + +LH N+CR L Sbjct: 777 DQSTFMVEMLETAAILKQATARSFVIMDEVGRGTTPEDGTAVSFACLHHLHYRNQCRTLF 836 Query: 769 ATHFHELTDLSKSLKRFHNATLQVSDSNEG-IIFLHKVIPGIADHSYGIQVGKLAGLPNT 827 ATHFH L D+++ V ++ EG F+HK+ GI S+ ++V +LAGLP+ Sbjct: 837 ATHFHGLADMTQEFPALGRYCTDVKETTEGRFSFVHKLRKGINRESHALKVAQLAGLPSE 896 Query: 828 VISRAYDI 835 + A + Sbjct: 897 TLELARSV 904 >gi|257462576|ref|ZP_05626986.1| DNA mismatch repair protein MutS [Fusobacterium sp. D12] Length = 526 Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 177/474 (37%), Positives = 290/474 (61%), Gaps = 19/474 (4%) Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L++ +++ +S + P R+GG R LDE R + K I+ ++ + E+T IK Sbjct: 59 LQEEIANSISSEAPFSIREGGIFRTSYHKELDELRHIASSGKEILLEIEAREREKTGIKT 118 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LKIK+N GYFIEV+ ++ ++ +I +QT+ N R+ EL + E+RI NA Sbjct: 119 LKIKYNKVFGYFIEVSKANEHLVP------SHYIRKQTLVNSERYIVEELKEYEDRILNA 172 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 +E F+ I E+ E L ++ ++ +D+ + A +A +++Y RP + Sbjct: 173 KTKIENLEYYLFQEFVGKIKEKKEELLELAKQLSFLDVMTSFAQVAIQKSYVRPEVLEED 232 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 ++ GRHPIVE + + S ++ ND + ++ +LTGPNM GKST+++Q Sbjct: 233 ILEIRGGRHPIVESLIPKGS---YVKNDLYFD-----RTERMMVLTGPNMSGKSTYMKQI 284 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI+I+AQ+GS+VPA +A IGIVDK+F+R+G++D+L +G+STFMVEM E A+I++ AT + Sbjct: 285 ALIIILAQVGSFVPADFAKIGIVDKIFTRIGASDDLLTGQSTFMVEMSEVANIVHNATEK 344 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 SF+ILDEIGRGT+T DG+SIA A EY+H R + + ATH+HELT+L K L+ N + Sbjct: 345 SFIILDEIGRGTSTFDGISIATAITEYIHSHIRAKTIFATHYHELTELEKKLELVKNYRI 404 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM 850 +V + + ++FL +++ G AD SYGI+V KL+GLP +++ R+ IL EK +K M Sbjct: 405 EVRERGKEVLFLREIVQGGADKSYGIEVAKLSGLPQSILKRSKQILSRLEKQKALVEKKM 464 Query: 851 R-----LYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + L+ E +E + ++ +E+I+ +++++M+PL AL L ++K Sbjct: 465 QGEQMMLFQSEEMEEEEEAEFHIEEQSVLEEIRNVSIEQMTPLQALVLLQSLKG 518 >gi|328351678|emb|CCA38077.1| DNA mismatch repair protein mutS [Pichia pastoris CBS 7435] Length = 923 Score = 320 bits (821), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 267/863 (30%), Positives = 416/863 (48%), Gaps = 126/863 (14%) Query: 43 LVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIG 102 +V ++G FYEL+F A+ + L +TL+ + K +IP G P H + Y++ + +G Sbjct: 121 IVLTQVGSFYELYFQHAIKYAPELNLTLSSK-KIRDMEIPFAGFPDHAVDKYLKMIFDLG 179 Query: 103 HRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIR-- 160 H IC Q E K ++R V RL+TPGT+ +D L ++NYL+ + + Sbjct: 180 HTAVICNQTNGLYENK-------IQRPVNRLITPGTVIDDSLRDYHNNNYLLTITFPKDP 232 Query: 161 ------TEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEK------------ 202 +AW D+ G F + + +L++ + RI P EI+ +E+ Sbjct: 233 LKEIDGVNVGLAWADVGLGTFHVLETTLSQLMTHVSRISPSEILINEEVDLETLISGKWY 292 Query: 203 -ELSHAEYKSLFETLGNVAVAQP--NVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 EL E+K F T + A+ N FF + +NI + +F Q E++A Sbjct: 293 PEL--VEFKRYFITRQKLPSARKKINSFFKRFVDPE-----HNIKAA--YDNFKQKEQSA 343 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS-REQSLLKTI 318 + + Y+ + K P R + + ID +LE+++T G R SL+ I Sbjct: 344 MLSLLHYLDECIPNYKTNFSSPTRSISNTLMQIDPKTMLDLELIQTRQGGFRTGSLVSII 403 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D ++T AG R +++P + + I RL + F N +L ++ ++K + D+ R + Sbjct: 404 DLTLTHAGSRRLKSWLSAPSAELSIIQERLSLVELFRSNRLLSEELRLLMKDTADIKRLM 463 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 R+ G+ +P ++ ++ IL L L E ++KL LP L Sbjct: 464 RRINNGKVDPMELVLV------ARTILQLQDMESLISEQSPHIQKLL-LP------LYQT 510 Query: 439 LSDD------------LPTFKRDGGFLRDGADA-------SLDETRS-----LRDQSKRI 474 LSDD + + G + D S+ ET S LR + R+ Sbjct: 511 LSDDGLLEKLSKELLTVIDVENLGKKTENRLDTTVIRKYWSITETVSPKLVTLRKRYSRL 570 Query: 475 I---ASLQLKYAEETKIKNLKIKHNNNLG------YFIEVTSSSASVLKKDLE-SKDRFI 524 + L Y E K N+ K + L + +E+ S++A+ L + KDR Sbjct: 571 VNKCTQLLETYESELKANNINYKGLHLLKDVRSGEFLLEIKSTNANSLASTVSIFKDRL- 629 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIE----LESFEILSNAIIEQSESLDNAS 580 R + R E +L R+ T +L E LESF + ++ + + NAS Sbjct: 630 -RDKTRSSCRLVDPEWTELGTRLVE-TEYLILKEEETILESFRV---RLLALTNDIRNAS 684 Query: 581 QVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSS--KPFIAND 638 +I D+ I+ +ILA+ N +P ID S V DGRH +VE+ LKQ + F AND Sbjct: 685 YIIEKQDVLISFSILARNMNLNKPHIDESLELDVVDGRHIVVEEGLKQNLGEIQDFTAND 744 Query: 639 CDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFS 698 C L W++TGPNMGGKSTFLRQNALIVI+AQ+GS+VPAS A IGIVDK+F+ Sbjct: 745 CQLDTKKPT-----WIITGPNMGGKSTFLRQNALIVILAQIGSFVPASSARIGIVDKIFT 799 Query: 699 RVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYL 758 R+GS+DN+ +STFMVEM ETA+IL ++T +S I+DE+GR L+ L + L Sbjct: 800 RIGSSDNIYRNQSTFMVEMTETAAILKESTPRSLAIVDELGR---ELEALLLEDTAFMEL 856 Query: 759 HETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQV 818 E R R + +L K N +L +SD IIF H++ PGI+ HSYG+++ Sbjct: 857 IEFQRTR---------IIELEK------NTSLPISDR---IIFDHRLKPGISAHSYGLEI 898 Query: 819 GKLAGLPNTVISRAYDILKTFEK 841 +LAG P I ++ +E+ Sbjct: 899 AELAGFPRESIEVGRMVMDRYEE 921 >gi|39944968|ref|XP_362021.1| hypothetical protein MGG_04466 [Magnaporthe oryzae 70-15] gi|145011430|gb|EDJ96086.1| hypothetical protein MGG_04466 [Magnaporthe oryzae 70-15] Length = 1120 Score = 320 bits (821), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 272/971 (28%), Positives = 441/971 (45%), Gaps = 171/971 (17%) Query: 8 PQKLY--SEQIDLEENLKSSTPMMRQYIEIKSIN--PDSLVFYRMGDFYELFFDDALLAS 63 PQ L +E + L E+ + P + Q +++N + ++ R+G FYEL+F+ A Sbjct: 172 PQGLIKDAEPLPLPEDEGPTYPTVIQQAR-RNMNRFDNCVLLTRVGGFYELYFEHAQEIG 230 Query: 64 RCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK-IGHRIAICEQIESPLEAKKRGN 122 L + + + G ++ M G P + +++ L++ + +AI E+ + K + Sbjct: 231 PQLNLKVATKKTAAG-NVAMAGFPFFQLDRFLKVLVQDLNRYVAIAEEFPNDAGDKVKSG 289 Query: 123 KSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAV-----ARIRTEWA------------- 164 + R V R++TPGTL ++ + P +NY+M++ RI A Sbjct: 290 GLMHDRRVARVITPGTLIDENFMDPYSNNYVMSIHMPEPPRISMREAKDVSAAAAAESLA 349 Query: 165 ---------------IAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHAEY 209 +AW+D+STG F ++ L S + R+ P+EI+ +A Sbjct: 350 VPQPLMENIANSPLGLAWLDLSTGHFITQSTTLGSLTSVLSRVSPKEIVLDRTITPYASE 409 Query: 210 KSLFETLG----NVAVAQPNVFFDHSISESRIADYYNITTVD----TFGSFSQVEKTAAA 261 + L + +P + AD+ + + + F+ E A+ Sbjct: 410 ELLTLLAEERRLSTHAKRPEQWTP--------ADWAPMLESEMPPRSMEMFTTEEVQASN 461 Query: 262 AAISYIK-KTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTID 319 + Y+K + Q +N + P R + ID + +LEI T+ G+ SLL + Sbjct: 462 LLLHYVKDRLQNINI-KLQPPRRHQSMEVMSIDKNSMRSLEIKSTVRDGALRGSLLHAVR 520 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKIL----------- 368 ++T G RL E +++P T I R D ++ F Q+ L + + +L Sbjct: 521 RTVTRGGARLLDEWLSAPSTSLDVITARQDLVSRFRQDETLRDSVVLLLRRCADSHRLVQ 580 Query: 369 -----KSSPD----VPRSL-------SRLK------------------------IGR--- 385 + PD + R++ SRLK IGR Sbjct: 581 KFALGRGDPDDLLDLSRTIAASNEIVSRLKSAVATSTGPGNSTPESGSECLANLIGRINL 640 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLP- 444 +P +A + IR+ I+ L ++ L EE G + +L + + + T S+ L++ LP Sbjct: 641 SQPLKLAKM---IRNAIDEEGLVQRHQLEEEAAGEMVELAE--RVVTATGSTDLANVLPK 695 Query: 445 ------------------------TFKRDGGFLRDGADASLD----ETRSLRDQSKRIIA 476 + D ++ GA L E L + + Sbjct: 696 SAPSPTAAAKKRRAVATTSIREYYSADNDAWIMKSGASDVLSTLHAELSGLLQERTELQE 755 Query: 477 SLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFT 536 SLQ + T L +K NLG+ V A D + + F Sbjct: 756 SLQDRLQAST----LTLKWTPNLGHICHVKGKDARA------PLDGIRSLSSSRSTRSFH 805 Query: 537 TLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILA 596 E DL R+ A + E F +L A+++ L + V+ +D+ +A LA Sbjct: 806 HDEWTDLGARLDKARVAIRAEEQRVFHLLRRAVVKALVPLRRNAAVLDELDVVTGMACLA 865 Query: 597 KEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLT 656 E+ + RP++++ T + GRHP VE L + + F NDC + G++WL+T Sbjct: 866 HERGWIRPVVNHGTAHAIIGGRHPTVEAGLADRG-RSFTGNDCFV---GSAGHGRVWLVT 921 Query: 657 GPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVE 716 GPNM GKSTFLRQNALI ++AQ+G +VPA +A +GIVD LFSRVGSAD+L +STFMVE Sbjct: 922 GPNMAGKSTFLRQNALITVLAQVGCFVPADHAELGIVDALFSRVGSADDLYRDQSTFMVE 981 Query: 717 MIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELT 776 M+ETA IL AT +SFV++DEIGRGT DG ++A+A +E+L + NRCR L ATHFH +T Sbjct: 982 MLETAQILRSATPRSFVVMDEIGRGTTPEDGTAVAFACVEHLVKINRCRALFATHFHAVT 1041 Query: 777 DL--SKSLKRFHNATLQV--------SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPN 826 DL +K + +T V D+ G I++HK+ G+ S+ ++V +LAGLP Sbjct: 1042 DLAVAKGIYAAEGSTDGVEMYCTDVEEDTGGGFIYMHKLRKGVNRQSHALKVARLAGLPE 1101 Query: 827 TVISRAYDILK 837 I+ A D+L+ Sbjct: 1102 AAINVAKDVLQ 1112 >gi|330950644|gb|EGH50904.1| DNA mismatch repair protein MutS [Pseudomonas syringae Cit 7] Length = 492 Score = 320 bits (820), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 183/475 (38%), Positives = 276/475 (58%), Gaps = 31/475 (6%) Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 L L + D+ P RDGG L+ G DA LD+ +SL + + + + L+ + T + N Sbjct: 39 LADLLQRAIIDNPPAVIRDGGVLKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLGN 98 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LKI +N GYFIE+ S A D +I RQT+ RF T EL + E++ +A Sbjct: 99 LKIGYNRVHGYFIELPSKQAEQAPAD------YIRRQTLKGAERFITPELKEFEDKALSA 152 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 + AL E +E L +I L + + +A +D+ LA A + P + Sbjct: 153 KSRALAREKMLYETLLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLDLNCPRFVSEP 212 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 ++ GRHP+VE+ L S PF+AND L +S ++ ++TGPNMGGKST++RQ Sbjct: 213 CMRIEQGRHPVVEQVL----STPFVANDLALD-----DSTRMLVITGPNMGGKSTYMRQT 263 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALIV++A +GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++ Sbjct: 264 ALIVLLAHIGSFVPAASCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDK 323 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S V++DE+GRGT+T DGLS+AWA E L + R L ATH+ ELT L +S N L Sbjct: 324 SLVLMDEVGRGTSTFDGLSLAWAAAECLAQL-RAYTLFATHYFELTVLPESEPLVTNVHL 382 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDM 850 ++ NE I+FLH+V+PG A SYG+ V +LAG+P VISRA + L+ E Sbjct: 383 NATEHNERIVFLHRVLPGPASQSYGLAVAQLAGVPGKVISRAKEHLQRLET--------T 434 Query: 851 RLYYPEIQTKESKNNLSKNDKLF-------VEKIKCLNLDEMSPLTALKTLYAVK 898 L + + + K K + + +F ++++ + +D+M+P AL LY ++ Sbjct: 435 SLPHEQPRAKPGKPAVPQQSDMFASLPHPVLDELSKVKVDDMTPRQALDLLYTLQ 489 >gi|58260870|ref|XP_567845.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] gi|134117169|ref|XP_772811.1| hypothetical protein CNBK1840 [Cryptococcus neoformans var. neoformans B-3501A] gi|50255429|gb|EAL18164.1| hypothetical protein CNBK1840 [Cryptococcus neoformans var. neoformans B-3501A] gi|57229926|gb|AAW46328.1| conserved hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] Length = 1057 Score = 320 bits (819), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 257/930 (27%), Positives = 433/930 (46%), Gaps = 131/930 (14%) Query: 26 TPMMRQ-YIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR---GKHLGKDI 81 TP+ + Y+ K PD ++ R+G FYE +F+ A + L ++L ++ + Sbjct: 132 TPLAHEVYLNWKRF-PDCILLTRVGKFYESYFEPARYLASILSLSLAEKKYGANEAKRSY 190 Query: 82 PMCGVPVHTANHYIQKLIK-IGHRIAICEQIESPLEAKKRGNKSLV-----RRNVVRLVT 135 P G PVH + Y++ L++ +GH + + E+ ++ G K R V R+VT Sbjct: 191 PFAGFPVHALDKYLKMLVQDLGHTVVLVEEYDTEGAVAHTGKKLTAGSGPKERRVYRVVT 250 Query: 136 PGTLTEDQLLSPTDSNYLMAVA-----RIRTEWAIAWIDISTGIFKISTSNHDRLISDIM 190 PGT+ ++ + S YL+A+A + E ++A+ D STG F + ++ ++ Sbjct: 251 PGTMVDESWVDADQSRYLLAIAVGNEGQNGQELSLAYTDASTGEFFTKDTTVSQMEDELA 310 Query: 191 RIDPREII------------FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIA 238 RI PRE++ ++ E+ + + E L + V V F R Sbjct: 311 RITPREVVLDNSLYELWREHYNYSEMKRKDASQVEELLALLRVLGVRVSF---ADPCRPP 367 Query: 239 DYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARS 298 Y + T + E+ AAA +++ + P + P ++ + + ID+A Sbjct: 368 PLYTSASSPTLHP-TTPEENAAALLQHHLQYALRESMPALRRPHKQSNSAFMQIDAATLQ 426 Query: 299 NLEILRTLSG----------------SREQSLLKTIDYSITGAGGRLFAERIASPLTDST 342 LEI S + +LL + +IT +G RL + +P T Sbjct: 427 ALEIRHAFRPGGLIATGETQTNSSPLSAKGTLLSVVSKTITSSGHRLLIRTLTAPSTSPH 486 Query: 343 KINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGI 402 IN+RL + F+ L ++ LK D+ R + R + RG +DI + IR Sbjct: 487 IINSRLALVQAFMDREDLKTELRHELKELGDIMRIIQRFRGQRGTGRDIWDVGRWIRGAQ 546 Query: 403 NILNLF---LKNDLPEELRGAVEKLKKLPQSLE-----KTLSSMLSDDLPTFKRDGGFLR 454 IL +K ++ A+ K + + + E + L + S + + R Sbjct: 547 RILETIKEEIKIEVGRNNEKAIRKSEGITRLQEFVDSFRDLDRIASKIESSVEESAIMFR 606 Query: 455 DGADASL-----------------------DETRSLRDQSKRIIA----------SLQLK 481 G D S+ ++ R R++ +R ++ +LQL+ Sbjct: 607 SGDDKSIIDEQEAGDALLTSQASSKESEADEKQRIKRERDEREMSEWWIRPQFSPALQLR 666 Query: 482 YAEETKIK-----------------NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 + E + +K L I+ N+ Y I++++ A + +K R + Sbjct: 667 HDELSALKAEAQKLQASLIKKYDTPTLTIEKNHRFSYHIQMSAKDAEKV-----AKARSL 721 Query: 525 HR-QTMSNLTR-FTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQV 582 R +M+ T F L +L RI + + L N ++EQS+++ S++ Sbjct: 722 ERIGSMTGKTAYFAYAPLAELGTRIEIMMEYLGAAQRRAARELQNMVVEQSDAIQQNSEL 781 Query: 583 IAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLS 642 + +D+S++ A A E N+ RPI+DNST + +GRHP VE +L +S+ F N ++ Sbjct: 782 VDELDLSLSFAQNAVEMNWVRPILDNSTELQIINGRHPSVESSL-LSASRNFTPNSTHMA 840 Query: 643 CPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGS 702 + L ++TGPN GGKST LRQ A+I I+AQ GS+VPA Y +GIVD++FSRVG+ Sbjct: 841 -----SDTHLHVITGPNQGGKSTLLRQTAVIAILAQSGSFVPAEYVKMGIVDRVFSRVGA 895 Query: 703 ADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETN 762 D+L RSTFM+EM+ETA IL AT +S VI+DEIGRGT G+SIA+AT++Y+ E Sbjct: 896 RDDLWRDRSTFMLEMVETAGILRHATERSLVIMDEIGRGTTLQAGVSIAYATLDYILENI 955 Query: 763 RCRGLLATHFHELTD-LSKSLKRFHNATLQ-----------VSDSNEGIIFLHKVIPGIA 810 +CR L ATH+HEL L KR ++ V++++ + +K+ PGI Sbjct: 956 KCRTLFATHYHELGQMLGYDPKRAEGEVIKGRSGIAFWCTDVNEADGAFSYSYKLRPGIN 1015 Query: 811 DHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 S+ I+ +AG+P + + A L T + Sbjct: 1016 YDSHAIKAASIAGMPESFLRVAESTLVTLQ 1045 >gi|148657805|ref|YP_001278010.1| DNA mismatch repair protein MutS [Roseiflexus sp. RS-1] gi|189083188|sp|A5UZK7|MUTS_ROSS1 RecName: Full=DNA mismatch repair protein mutS gi|148569915|gb|ABQ92060.1| DNA mismatch repair protein MutS [Roseiflexus sp. RS-1] Length = 1085 Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 162/391 (41%), Positives = 246/391 (62%), Gaps = 16/391 (4%) Query: 453 LRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASV 512 +R G + +D+ + ++R I+ L+ K E T IK+L++ +N GY+IEV + A Sbjct: 622 IRPGFEPEIDQVVAASRDAQRWISELEPKERERTGIKSLRVDYNRVFGYYIEVPKTYADQ 681 Query: 513 LKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQ 572 + K +I +QT++ R+ T EL E + A + +E +F + + + Sbjct: 682 VPK------HYIRKQTLTTGERYFTDELKRYEEIVEQAQQRLIDLERRAFARICDVVTGA 735 Query: 573 SESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSK 632 L +++IA ID+ ALA A Y RP + + T + GRHP+VE+TL + Sbjct: 736 GARLLRTARMIATIDVFAALAEAAVRGRYVRPELYDDTRLRIVGGRHPVVEQTLDET--- 792 Query: 633 PFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGI 692 F+ ND ++ D + ++ L+TGPNM GKST LRQ ALI +MAQ+GS+VPA A IG+ Sbjct: 793 -FVPNDIEM----DTETRQICLITGPNMSGKSTVLRQVALIALMAQIGSFVPADAAEIGL 847 Query: 693 VDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAW 752 VD++F+R+G+ D++A+GRSTFMVEM ETA++L Q+T +S +ILDE+GRGT+T DG++IA Sbjct: 848 VDRIFTRIGAQDDIATGRSTFMVEMTETAALLAQSTRRSLIILDEVGRGTSTYDGMAIAQ 907 Query: 753 ATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIA 810 A IEY+H R CR L ATH+HELTDL ++L R N + ++ + ++FLH++ PG A Sbjct: 908 AVIEYIHNEPRLGCRTLFATHYHELTDLERTLPRLKNYHMAATEQDGRVVFLHELRPGGA 967 Query: 811 DHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 D SYGI V +LAG+P +VI RA ++L E+ Sbjct: 968 DRSYGIHVAELAGIPQSVIRRASELLAELER 998 Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 122/460 (26%), Positives = 214/460 (46%), Gaps = 73/460 (15%) Query: 13 SEQIDLEENLKSSTPMM------RQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCL 66 +E+ E L+ P + RQY +K+ +PD+++ YR+GDFYE F DDA L + L Sbjct: 4 AERRAFERQLQQEFPGLELHAWYRQYRSLKAAHPDAILLYRLGDFYETFDDDAKLVADLL 63 Query: 67 GITLT------KRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQI-ESP---LE 116 +TLT ++G+ + PM G+P H Y+ +L+ G+R+AI EQI E+P + Sbjct: 64 EVTLTYKEFASQKGRDQKQRCPMAGIPYHAVEGYVARLVGAGYRVAIAEQITETPSSRTD 123 Query: 117 AKKR-------------GNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEW 163 + R G+ +V R VVR++TPGT+ E ++ +NYL A+ Sbjct: 124 TRPRSIFAAGIEQTSLTGSNRMVERKVVRVITPGTIIESGMIPAERNNYLAALIADHGRI 183 Query: 164 AIAWIDISTGIFKISTSNHDRLI----SDIMRIDPREIIFSEK--------ELSHAEYKS 211 +A+ D+STG F + +R ++ R++ EI+ ++ E S A + Sbjct: 184 GLAYADLSTGEFAAVEFSGERAAQQAQGELTRLNAAEILVPDRADLRLPGLEPSSARLEQ 243 Query: 212 LFETL----------------------------GNVAVAQPNVFFDHSISESRIADYYNI 243 E L G V A P +D + + + + Sbjct: 244 DLEFLTREERELLLPGERVARRVERENNARWAHGRV-TAWPERRWDLRNAHDTLLHQFGV 302 Query: 244 TTVDTFGSFSQ-VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEI 302 ++ FG + + AA A + Y ++TQ + +F+D + NLE+ Sbjct: 303 RSLAGFGLEDRPLAIRAAGAIVQYARETQQGVVANLRSIRAYTPGDAMFLDPQTQRNLEL 362 Query: 303 LRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILIN 362 L SG+ SL+ +D + T G RL ++ PL D T+++ R D++ F+ + IL Sbjct: 363 LEGASGTTRGSLIGVLDQTRTPMGARLLRRWVSQPLCDLTRLHARHDAVERFVTDAILRA 422 Query: 363 PIQKILKSSPDVPRSLSRL--KIGRGEPKDIAVIRDGIRS 400 +++ L+ D+ R ++R+ +G P+D+A +RD +R+ Sbjct: 423 SVRETLRRVGDMERVVNRIIQGVGVATPRDMARLRDALRA 462 >gi|156743470|ref|YP_001433599.1| DNA mismatch repair protein MutS [Roseiflexus castenholzii DSM 13941] gi|189083187|sp|A7NPT5|MUTS_ROSCS RecName: Full=DNA mismatch repair protein mutS gi|156234798|gb|ABU59581.1| DNA mismatch repair protein MutS [Roseiflexus castenholzii DSM 13941] Length = 1088 Score = 317 bits (812), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 175/469 (37%), Positives = 273/469 (58%), Gaps = 37/469 (7%) Query: 453 LRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASV 512 +R G + +D + ++R I+ L+ K E T IK+L++ +N GY+IEV + A Sbjct: 626 IRPGFEPEIDRVVAASRDAQRWISELEPKERERTGIKSLRVDYNRVFGYYIEVPKTYADQ 685 Query: 513 LKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQ 572 + K +I +QT++ R+ T EL E + A + +E +F + + Sbjct: 686 VPK------HYIRKQTLTTGERYFTDELKRYEEIVEQAQQRLIDLERRAFARICETLAGA 739 Query: 573 SESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSK 632 L ++ IA ID+ ALA A Y RP + + T + GRHP+VE+TL + Sbjct: 740 GVRLLRTARTIATIDVFAALAEAAVRGRYVRPELYDDTRLRIIGGRHPVVEQTLDET--- 796 Query: 633 PFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGI 692 FI ND ++ D + ++ L+TGPNM GKST LRQ ALI +MAQ+GS+VPA A IG+ Sbjct: 797 -FIPNDIEM----DTETRQICLITGPNMSGKSTVLRQVALIALMAQIGSFVPADAAEIGV 851 Query: 693 VDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAW 752 VD++F+R+G+ D++A+GRSTFMVEM ETA++L Q+T++S +ILDE+GRGT+T DG++IA Sbjct: 852 VDRIFTRIGAQDDIATGRSTFMVEMTETAALLAQSTHRSLIILDEVGRGTSTYDGMAIAQ 911 Query: 753 ATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIA 810 A IEY+H R CR L ATH+HELTDL ++L R N + ++ + ++FLH++ PG A Sbjct: 912 AVIEYIHNEPRLGCRTLFATHYHELTDLERTLPRLKNYHMAATEQDGRVVFLHELRPGGA 971 Query: 811 DHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESK-----NN 865 D SYGI V +LAG+P VI RA ++L E+ + E + + ++ Sbjct: 972 DRSYGIHVAELAGIPQPVIRRATELLAELERRAPRSTPQPAPERTEERPAAGRPTARSHS 1031 Query: 866 LSKND---------KLF-------VEKIKCLNLDEMSPLTALKTLYAVK 898 ++ D LF +E ++ L++++++PL AL LY ++ Sbjct: 1032 AARGDPPRAPDGQLSLFDLTPGPVIEMLRRLDINQLTPLEALNKLYELQ 1080 Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 122/460 (26%), Positives = 212/460 (46%), Gaps = 73/460 (15%) Query: 13 SEQIDLEENLKSSTPMM------RQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCL 66 +E+ E L+ P + RQY +K+ +PD+++ YR+GDFYE F DDA L + L Sbjct: 4 AERRAFERQLQQEFPGLELHAWYRQYRSLKAAHPDAILLYRLGDFYETFDDDAKLVADLL 63 Query: 67 GITLT------KRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQI-ESP---LE 116 +TLT ++G+ + PM G+P H Y+ +L+ G+R+AI EQ+ E+P + Sbjct: 64 EVTLTYKEFASQKGRDQKQRCPMAGIPYHAVEGYVARLVGAGYRVAIAEQMTETPSSRTD 123 Query: 117 AKKR-------------GNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEW 163 + R G +V R VVR++TPGT+ E +L +NYL A+ Sbjct: 124 TRPRSIFAAGIEQTALIGGHKMVERKVVRIITPGTIIESGMLPAERNNYLAALIADHGRI 183 Query: 164 AIAWIDISTGIFKISTSNHDRLI----SDIMRIDPREIIFSEK--------ELSHAEYKS 211 +A+ D+STG F + +R ++ R++P EI+ ++ E S A + Sbjct: 184 GLAYADLSTGEFAAIEFSGERAAQQAQGELARLNPAEILVPDRADLRLPGLEPSSARLEQ 243 Query: 212 LFETL----------------------------GNVAVAQPNVFFDHSISESRIADYYNI 243 E L G+V A +D + + + + Sbjct: 244 DLEFLTREERERVLPGERIARRVERENHARWAHGHV-TAWSEQRWDLRNARDTLLHQFGV 302 Query: 244 TTVDTFG-SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEI 302 ++ FG + + AA A + Y ++TQ + + +D + NLE+ Sbjct: 303 HSLAGFGLADRPLAIRAAGAIVQYARETQQGTVANLRAIRVYTPGDAMVLDPQTQRNLEL 362 Query: 303 LRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILIN 362 L SG+ SL+ +D + T G RL I+ PL D ++ R D+++ F+ + IL Sbjct: 363 LEGNSGTTRGSLIGVLDQTRTPMGARLLRRWISQPLCDLARLRARHDAVDHFVNDAILRA 422 Query: 363 PIQKILKSSPDVPRSLSRLKIGRG--EPKDIAVIRDGIRS 400 +++ L+ D+ R ++R+ G G P+D+A +RD +R+ Sbjct: 423 SVRETLRRVGDMERVVNRIIQGSGVATPRDMARLRDALRA 462 >gi|70953875|ref|XP_746012.1| DNA repair protein [Plasmodium chabaudi chabaudi] gi|56526506|emb|CAH77895.1| DNA repair protein, putative [Plasmodium chabaudi chabaudi] Length = 1136 Score = 317 bits (811), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 257/921 (27%), Positives = 440/921 (47%), Gaps = 114/921 (12%) Query: 5 FSSPQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASR 64 ++ PQ Q +E TP M+Q+ +IKS N D ++F++MG FYE+F+ DA + Sbjct: 209 WTPPQ---DHQWAIEYKQAHYTPGMQQFWKIKSKNFDKIIFFKMGRFYEIFYIDACIMHT 265 Query: 65 CLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKS 124 G+ G+ P G P + + Y +K+I GH++ + EQ+E+P E ++R S Sbjct: 266 ICGLNWMN-----GEQKPHLGFPEQSLHLYAKKVINSGHKVVVIEQMETPKELEQRNKVS 320 Query: 125 ------LVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAV--------------ARIRTEWA 164 ++R V + T GT+ D +LS ++ Y++ ++ + Sbjct: 321 SGPKDKAIKREVNEIYTKGTILHDNMLS-AETKYIICFHFDDIEDIGDDNTGSQTHCNFG 379 Query: 165 IAWIDISTGIFKISTSNHDR----LISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVA 220 D++T + N D L + + ++ P EI++ K ++ E S+F+ + Sbjct: 380 FVVSDVATSYIAVGYCNDDESRIELRTLLAQLCPAEILYCSKNVN-KEVLSIFKNIPACP 438 Query: 221 -VAQPNVFFDHSISESRIADYY-NI-TTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPT 277 + N F + S + Y+ NI ++ + + V A I Y++ + K Sbjct: 439 ELTSVNSFPNIIASLDEVNKYFENIPKALEAYKEQNSV-ICAFGGFIVYLRSLLLDKKLL 497 Query: 278 ----IGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAER 333 I + + + + +D+ A +LEIL T SG + SL ++ + T G R Sbjct: 498 KFCKIEFYDLFKKDNYMVLDATALKHLEILETQSGETKNSLYDYVNKTCTNFGARNMRRW 557 Query: 334 IASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAV 393 + SPL + KIN RLD + F +N +++ I+ LK PD+ R L+++ I + + AV Sbjct: 558 VCSPLLNCDKINQRLDVVEFLRKNDHILSLIRLKLKKLPDIERLLNKICIQASQSERGAV 617 Query: 394 IRDGI-----RSGINILNLFLK--------NDLPEELRGAVEKLKKLPQSLEKTLSSMLS 440 D I + + LN F + N + E +L ++ + K+ + + Sbjct: 618 FFDNIVNTKLKEFVTFLNAFKEIDNMLIEINSIDNEEDVIPTRLFEITNTYNKSSKNDIK 677 Query: 441 DDLPTFKR-DGGFLR-------------DGADASLDETRSLRDQSKRIIASLQLKYAEET 486 P + FL +G D ++D ++ + ++ + + Sbjct: 678 GHYPEIDQITNEFLEKIYFDGEKEYKPAEGCDEAIDAINKKEKDIEKELNNILVDMKKVL 737 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLE---SKDRF--IHRQTMSNLTRFTTLELI 541 KI LK H Y IE + K++E K F I + + NL L Sbjct: 738 KIPTLKFVHAK-YKYEIECPDNVPKSFLKEVEITSVKKGFVRIQNEEIKNLVEM----LE 792 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 D+E +A F+ + + E E +A ++IA +D A A +A ++ Sbjct: 793 DIEQEKKDAI-------YPFFQKIFHLFYEHYEKYVSACRLIAELDCLQAFAYVAVNTSF 845 Query: 602 --CRPII----------DNSTN-----FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 RPI+ +N++ I+++ HP+V + FI N+ + C Sbjct: 846 PLTRPILHFMEYGKMGSENASKEKKPFLILENNIHPVVATLMPN-----FIPNNIYMGC- 899 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 DK LLTGPNMGGKST LRQ A+ VI+AQ+G++VP++Y + IVDK+F+R+GS+D Sbjct: 900 -DKEKETTLLLTGPNMGGKSTLLRQTAISVILAQIGAFVPSTYCELTIVDKIFTRLGSSD 958 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 NL G+STF+VE+ + +++L Q+T S ILDE+GRGT++ DG +IA +T+E + +T +C Sbjct: 959 NLFEGKSTFLVELEDISNLLKQSTKYSLAILDELGRGTSSFDGTAIALSTLEQISDTIKC 1018 Query: 765 RGLLATHFHELTDLSK---SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKL 821 R + +TH+H L + K ++ +H +L + D E IIFL+K I GI S+GI + KL Sbjct: 1019 RCIFSTHYHLLVEEVKHNTNISNYH-MSLSIDDDQEKIIFLYKFIKGICPKSFGIHIAKL 1077 Query: 822 AGLPNTVISRAYDILKTFEKL 842 AGLP +I A++ FE + Sbjct: 1078 AGLPKEIIELAHEKSVLFENV 1098 >gi|262041479|ref|ZP_06014678.1| DNA mismatch repair protein MutS [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041174|gb|EEW42246.1| DNA mismatch repair protein MutS [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 507 Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 184/530 (34%), Positives = 295/530 (55%), Gaps = 28/530 (5%) Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE 432 D+ R L+RL + P+D+A +R ++ + +L L + + ++ EK+ + + L Sbjct: 1 DLERILARLALRTARPRDLARMRHALQQ-LPLLRELLADVDSQPVQKLREKMGEFTE-LR 58 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLK 492 + L + D P RDGG + G LDE R+L D + + L+++ E + LK Sbjct: 59 ELLERAVIDAPPVLVRDGGVIAPGYSEELDEWRALADGATDYLDKLEIRERERLGLDTLK 118 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 + +N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + Sbjct: 119 VGYNAVHGYYIQISRGQSHL------APIHYVRRQTLKNAERYIIPELKEYEDKVLTSKG 172 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 AL +E + ++ L + ++ L ++ +A +D+ + LA A+ NYC P + Sbjct: 173 KALALEKQLYDELFDLLLPHLADLQTSASALAELDVLVNLAERAETLNYCCPTFSDKPGI 232 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 + +GRHP+VE+ LK+ PFIAN L+ ++ ++TGPNMGGKST++RQ AL Sbjct: 233 RISEGRHPVVEQVLKE----PFIANPLQLAPQR-----RMLIITGPNMGGKSTYMRQTAL 283 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 I ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S Sbjct: 284 IALLAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEHSL 343 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 V++DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L Sbjct: 344 VLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDA 403 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH---NQKD 849 + + I F+H V G A SYG+ V LAG+P VI RA L+ E + + Q D Sbjct: 404 LEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESISPNAAATQVD 463 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 T+ S + VE ++ L+ D ++P AL+ +Y +K+ Sbjct: 464 --------GTQMSLLAAPEETSPAVEALENLDPDSLTPRQALEWIYRLKS 505 >gi|197097574|ref|NP_001125043.1| DNA mismatch repair protein Msh3 [Pongo abelii] gi|55726784|emb|CAH90153.1| hypothetical protein [Pongo abelii] Length = 1023 Score = 315 bits (806), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 259/935 (27%), Positives = 466/935 (49%), Gaps = 123/935 (13%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ QYIE+K + D+++ G Y F +DA +A+R L I HL + Sbjct: 116 TPLELQYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYC-----HLDHNFMTAS 170 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIES-PLEAKKRGNKSLVRRNVVRLVTPGTL----- 139 +P H ++++L+ G+++ + +Q E+ L+A SL R + L T TL Sbjct: 171 IPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNRSSLFSRKLTALYTKSTLIGEDV 230 Query: 140 ----------TEDQLLSPTDSNYLMAVAR----IRTE------WAIAWIDISTG-----I 174 D++++ T ++YL+ ++ +R + I + +TG Sbjct: 231 NPLIKLDDAVNVDEIMTDTSTSYLLCISENKENVRDKKKGNIFIGIVGVQPATGEVVFDS 290 Query: 175 FKISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA--------QPNV 226 F+ S S + L + + + P E++ E +L +V+V N+ Sbjct: 291 FQDSASRSE-LETRMSSLQPVELLLPSALSEQTE--ALIHRTTSVSVQDDRIRVERMDNI 347 Query: 227 FFDHSISESRIADYYNITTVDTFGS-----FSQVEK---TAAAAAISYIKK---TQMVNK 275 +F++S + + ++Y TVD GS +EK + AA I Y+K+ +M++K Sbjct: 348 YFEYSHAFQAVTEFYAKDTVDIKGSQIISGIVNLEKPVICSLAAIIKYLKEFNLEKMLSK 407 Query: 276 PTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSITGAGGRLFAERI 334 P + + + I+ NLEIL+ + + + SLL +D++ T G R + + Sbjct: 408 PE-NFKQLSSKMEFMTINGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKLKKWV 466 Query: 335 ASPLTDSTKINTRLDSINFFIQN-PILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAV 393 PL +IN RLD+++ + + + I+ L+ PD+ R L + + ++ + Sbjct: 467 TQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIERGLCSIYHKKCSTQEFFL 526 Query: 394 I-------RDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTF 446 I + ++ I +N +++DL LR + ++ +L +E L +L++ Sbjct: 527 IVKTLYHLKSEFQAIIPAVNSHIQSDL---LRTVILEIPELLSPVEHYL-KILNEQAAKV 582 Query: 447 KRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI-KNLKIKHNNNLG--YFI 503 +D +D L + R +D+ + +I +Q+ E KI KN ++ G + I Sbjct: 583 GDKTELFKDLSDFPLIKKR--KDEIQGVIDEIQMHLQEIRKILKNPSAQYVTVSGQEFMI 640 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL--ES 561 E+ +S+ S + D ++ + ++RF + +++ R N L+++ E Sbjct: 641 EIKNSAVSCIPTD------WVKVGSTKAVSRFHSPFIVE-NYRHLNQLREQLVLDCSAEW 693 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 + L E SL A +A +D +LA +AK+ +YCRP + ++K+GRHP+ Sbjct: 694 LDFLEK-FSEHYHSLCKAVHHLATVDCIFSLAKVAKQGDYCRPTVQEERKIVIKNGRHPV 752 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 ++ L +Q ++ N+ DLS ++S ++ ++TGPNMGGKS++++Q ALI IMAQ+GS Sbjct: 753 IDVLLGEQDQ--YVPNNTDLS----EDSERVMIITGPNMGGKSSYIKQVALITIMAQIGS 806 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 YVPA A IGIVD +F+R+G+ADN+ GRSTFM E+ +TA I+ +AT+QS VILDE+GRG Sbjct: 807 YVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRG 866 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS----LKRFHNATLQVSDSN- 796 T+T DG++IA+AT+EY + L TH+ + +L K+ + +H L D++ Sbjct: 867 TSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMGFLVSEDASK 926 Query: 797 ----------EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI----------- 835 + + FL+++ GIA SYG+ V KLA +P ++ +A Sbjct: 927 LDPGTEEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAAHKSKELEGLINTK 986 Query: 836 ---LKTFEKLY-HHNQKDMRLYYPEIQTKESKNNL 866 LK F KL+ HN +D++ + E + +E++ +L Sbjct: 987 RKRLKYFAKLWTMHNAQDLQKWTEEFEMEETQTSL 1021 >gi|238758209|ref|ZP_04619388.1| DNA mismatch repair protein mutS [Yersinia aldovae ATCC 35236] gi|238703539|gb|EEP96077.1| DNA mismatch repair protein mutS [Yersinia aldovae ATCC 35236] Length = 628 Score = 314 bits (805), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 202/648 (31%), Positives = 338/648 (52%), Gaps = 36/648 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 + L S TPMM+QY+ +K+ +PD L+FYRMGDFYELF+ DA AS+ L I+LTKRG G+ Sbjct: 5 DKLDSHTPMMQQYLRLKAQHPDILLFYRMGDFYELFYSDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H+ +Y+ KL+++G AICEQI P + K V R VVR+VTPGT+ Sbjct: 65 PIPMAGVPYHSIENYLAKLVQLGESAAICEQIGDPATS-----KGPVERKVVRIVTPGTV 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F+++ ++ + + +++ R P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDGRGFGYATLDISSGRFRVTEPADLETMAAELQRTHPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 + E + E SL E + +P F+ ++ ++ + + FG + + Sbjct: 180 YPE----NFEQMSLIEQRHGLR-RRPLWEFELETAKQQLNLQFATRDLIGFGVEQAHLAL 234 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA + Y+K TQ + P I E Q + +D+AAR NLE+ + LSG E +L Sbjct: 235 RAAGCLLQYVKDTQRTSLPHIRGLTMERQQDGIIMDAAARRNLELTQNLSGGTENTLAAI 294 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D S+T G R+ + P+ D + R +I + + +Q L+ D+ R Sbjct: 295 LDCSVTAMGSRMLKRWLHMPVRDIKVLTDRQQAIGSLQE---ITAELQTPLRQVGDLERI 351 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKTL 435 L+RL + P+D+A +R + I L ++P + L V + +L LE+ Sbjct: 352 LARLALRTARPRDLARMRHAFQQLPEIHRLLQPVNIPHVQNLLSQVGQFDELQDLLERA- 410 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + + P RDGG + G + LDE R+L D + + L+++ E+ + LK+ Sbjct: 411 ---IVETPPVLVRDGGVIAPGYNTELDEWRALADGATDYLDRLEIREREKLGLDTLKVGF 467 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GY+I+V+ + ++ ++ RQT+ N R+ EL + E+++ + AL Sbjct: 468 NGVHGYYIQVSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSKGKAL 521 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 IE +E + + ++ L ++ +A +D+ LA A+ NY P + + + Sbjct: 522 AIEKGLYEEIFDLLLPHLPELQISANALAELDVLANLAERAETLNYSCPTLSDKPGIKIT 581 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 GRHP+VE+ L S+PFI+N LS ++ ++TGPNMGGK Sbjct: 582 GGRHPVVEQVL----SEPFISNPLTLS-----PQRRMLIITGPNMGGK 620 >gi|238797128|ref|ZP_04640630.1| DNA mismatch repair protein mutS [Yersinia mollaretii ATCC 43969] gi|238718975|gb|EEQ10789.1| DNA mismatch repair protein mutS [Yersinia mollaretii ATCC 43969] Length = 628 Score = 314 bits (804), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 204/649 (31%), Positives = 338/649 (52%), Gaps = 38/649 (5%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 + L S TPMM+QY+ +K+ +PD L+FYRMGDFYELF+ DA AS+ L I+LTKRG G+ Sbjct: 5 DKLDSHTPMMQQYLRLKAQHPDILLFYRMGDFYELFYSDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H+ Y+ KL+++G AICEQI P + K V R VVR+VTPGT+ Sbjct: 65 PIPMAGVPYHSIEPYLAKLVQMGESAAICEQIGDPATS-----KGPVERKVVRIVTPGTV 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F+++ ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDARGFGYATLDISSGRFRVAEPADIETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + E + E +L E + +P F+ ++ ++ + + FG Q + Sbjct: 180 YPE----NFEQMALIEHRHGLR-RRPLWEFELETAKQQLNLQFGTRDLIGFG-VEQAHQA 233 Query: 259 --AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLK 316 AA + Y+K TQ + P I E Q + +D+A R NLE+ LSG E +L Sbjct: 234 LRAAGCLLQYVKDTQRTSLPHIRGLTMERQQDGIVMDAATRRNLELTLNLSGGTENTLAA 293 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D S+T G R+ + P+ D + R +I + L +Q L+ D+ R Sbjct: 294 ILDCSVTAMGSRMLKRWLHMPVRDIKVLTDRQQAIGGLQE---LTAELQTPLRQVGDLER 350 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKT 434 L+RL + P+D+A +R + I L ++P + L V + +L LE+ Sbjct: 351 ILARLALRTARPRDLARMRHAFQQLPEIHRLLQPVNVPHVQNLLSQVGQFDELQDLLERA 410 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + + P RDGG + G +A LDE R+L D + + L+++ E+ + LK+ Sbjct: 411 ----IVETPPVLVRDGGVIAPGYNAELDEWRALADGATDYLDRLEIREREKLGLDTLKVG 466 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 N GYFI+V+ + ++ ++ RQT+ N R+ EL + E+++ + A Sbjct: 467 FNGVHGYFIQVSRGQSHLVPI------HYVRRQTLKNAERYIIPELKEYEDKVLTSKGKA 520 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L IE +E + + ++ L +++ +A +D+ LA A+ NY P + + + Sbjct: 521 LAIEKGLYEEIFDLLLPHLPELQSSANALAELDVLSNLAERAETLNYNCPTLSDKPGIKI 580 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 GRHP+VE+ L S+PFI+N LS ++ ++TGPNMGGK Sbjct: 581 TGGRHPVVEQVL----SEPFISNPLTLS-----PQRRMLIITGPNMGGK 620 >gi|330722299|gb|EGH00168.1| DNA mismatch repair protein MutS [gamma proteobacterium IMCC2047] Length = 445 Score = 313 bits (802), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 175/462 (37%), Positives = 267/462 (57%), Gaps = 29/462 (6%) Query: 448 RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTS 507 RDGG + +G D+ LDE R+L + + + + L+++ E T I LK+ +N GYFIE++ Sbjct: 4 RDGGVIANGFDSELDELRTLSENAGQFLVDLEVREKERTGISTLKVGYNRVHGYFIEISR 63 Query: 508 SSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSN 567 + D +I RQT+ N RF T EL + E+++ ++ + AL E +E L Sbjct: 64 LQSEQAPVD------YIRRQTLKNAERFITPELKEFEDKVLSSKSRALTREKMLYEQLVE 117 Query: 568 AIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLK 627 + + L + + ++ +D+ LA A+ P ++ + GRHP+VE Sbjct: 118 QLAAELAPLQDCAAGLSELDVLTNLAERAETLCLVAPELNQQDGISITQGRHPVVESL-- 175 Query: 628 QQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASY 687 PF+ ND L+ + ++ ++TGPNMGGKST++RQ ALIV++A +GSYVPA Sbjct: 176 --QDAPFVPNDVQLT-----SQERMMIITGPNMGGKSTYMRQTALIVLLAYVGSYVPAQA 228 Query: 688 AHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDG 747 A IG +D++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT S V++DE+GRGT+T DG Sbjct: 229 ASIGPIDRIFTRMGSSDDLAGGRSTFMVEMTETANILHNATANSLVLMDEVGRGTSTFDG 288 Query: 748 LSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIP 807 LS+AWA+ ++L + L ATH+ ELT L + N L ++ + I+FLH V P Sbjct: 289 LSLAWASAQHLAIQTQAYTLFATHYFELTTLPELTNNAINVHLNATEYEDHIVFLHSVQP 348 Query: 808 GIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLS 867 G A S+G+QV KLAG+P+ VI A EKL Q++++ + + K + Sbjct: 349 GPASQSFGLQVAKLAGVPDAVIGEAR------EKLISLEQQELQSQVSKTVDQREKPEQA 402 Query: 868 KNDKLF--------VEKIKCLNLDEMSPLTALKTLYAVKAWT 901 LF V+K+K L LD ++PL AL+ LY +K T Sbjct: 403 IQADLFSVPVPHPLVDKVKDLELDNLTPLQALQLLYDLKKLT 444 >gi|17231130|ref|NP_487678.1| DNA mismatch repair protein [Nostoc sp. PCC 7120] gi|17132771|dbj|BAB75337.1| DNA mismatch repair protein [Nostoc sp. PCC 7120] Length = 389 Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 167/382 (43%), Positives = 236/382 (61%), Gaps = 10/382 (2%) Query: 461 LDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESK 520 LDE ++ + + IA+L++ T I LK+ N GY+I ++ + A + + Sbjct: 5 LDERKATVEADHQWIANLEVDERARTGIPLLKVGFNETFGYYISISRAKADQVPAN---- 60 Query: 521 DRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNAS 580 +I +QT+ N R+ T EL + E RI A + +E E F L + EQ+E++ + S Sbjct: 61 --YIRKQTLKNEERYITPELKEREARILTARDDLHKLEYEVFVTLREEVGEQAEAIRHLS 118 Query: 581 QVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCD 640 + +A D+ LA LA Q YCRP + N + DGRHP+VE++L + F+ N + Sbjct: 119 RAVAAADVLCGLAELAVYQGYCRPEMVNGRELKIVDGRHPVVEQSL---PAGFFVPNSTE 175 Query: 641 LSCPNDKNS-GKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSR 699 L + + L +LTGPN GKS +LRQ LI +MAQ+GS+VPA A +G+ D++F+R Sbjct: 176 LGNIEETSPLPDLIILTGPNASGKSCYLRQVGLIQLMAQIGSFVPAKSARLGVCDRIFTR 235 Query: 700 VGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLH 759 VG+ D+LA+G+STFMVEM ETA+ILN AT++S V+LDEIGRGTAT DGLSIAWA EYL Sbjct: 236 VGAVDDLATGQSTFMVEMNETANILNHATSRSLVLLDEIGRGTATFDGLSIAWAVAEYLA 295 Query: 760 ETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVG 819 R R + ATH+HEL +L+ L N + V + + IIFLH+V PG AD SYGI+ G Sbjct: 296 MEIRSRTIFATHYHELNELAGMLPNVANYQVTVKELPDQIIFLHQVQPGGADKSYGIEAG 355 Query: 820 KLAGLPNTVISRAYDILKTFEK 841 +LAGLP VI RA ++ EK Sbjct: 356 RLAGLPTVVIQRAKQVMGQIEK 377 >gi|83315667|ref|XP_730891.1| G/T mismatch binding protein [Plasmodium yoelii yoelii str. 17XNL] gi|23490759|gb|EAA22456.1| G/T mismatch binding protein-related [Plasmodium yoelii yoelii] Length = 1261 Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 262/951 (27%), Positives = 448/951 (47%), Gaps = 145/951 (15%) Query: 5 FSSPQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASR 64 ++ PQ Q +E TP M+Q+ +IKS N D ++F++MG FYE+F+ DA + Sbjct: 283 WTPPQ---DHQWAIEYKQAHYTPGMQQFWKIKSKNFDKIIFFKMGRFYEIFYIDACIMHT 339 Query: 65 CLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKS 124 G+ G+ P G P + + Y +K+I GH++ + EQ+E+P E ++R S Sbjct: 340 ICGLNWMN-----GEQKPHLGFPEQSLHLYAKKVINSGHKVVVIEQMETPKELEQRNKTS 394 Query: 125 ------LVRRNVVRLVTPGTLTEDQLLSPTDSNYLM-------------------AVARI 159 ++R + + T GT+ D +LS ++ Y++ A ++ Sbjct: 395 SGPKDKAIKREINEIYTKGTILHDNMLS-AETKYIICFHFDDIEDIGDDDNNNNNAGSQT 453 Query: 160 RTEWAIAWIDISTGIFKISTSNHDR----LISDIMRIDPREIIFSEKELSHAEYKSLFET 215 + + D++T + N D L + + ++ P EI++ K ++ E S+F+ Sbjct: 454 KCNFGFVVSDVATSYISVGYCNDDESRIELRTLLAQLCPAEILYCSKNIN-KEVLSIFKN 512 Query: 216 LGNVA-VAQPNVFFDHSISESRIADYY-NI-TTVDTFGSFSQVEKTAAAAAISYIKKTQM 272 + + N F + S + Y+ NI ++ + + V A I Y++ + + Sbjct: 513 IPACPELTSVNSFPNIIASLDEVNKYFENIPKALEAYKEQNSV-ICAFGGFIVYLR-SLL 570 Query: 273 VNKPTIGYPERE--DI---QSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGG 327 ++K + + + E D+ + + +D+ A +LEIL T SG + SL ++ + T G Sbjct: 571 LDKKILKFCKIEFYDLFKKDNYMVLDATALKHLEILETQSGETKNSLYDYVNKTCTNFGA 630 Query: 328 RLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGE 387 R + SPL + KIN RLD + F +N +++ I+ LK PD+ R L+++ I + Sbjct: 631 RNMRRWVCSPLLNCDKINQRLDVVEFLRKNDHILSLIRLKLKKLPDIERLLNKICIQASQ 690 Query: 388 PKDIAVIRDGI-----RSGINILNLFLK--------NDLPEELRGAVEKLKKLPQSLEKT 434 + AV D I + + LN F + N + E +L ++ + K Sbjct: 691 SERGAVFFDNIVNTKLKEFVTFLNAFKEIDNMLIEINSIDSEEDLIPTRLFEITNTYNKI 750 Query: 435 LSSMLSDDLPTF-KRDGGFLR-------------DGADASLDETRSLRDQSKRIIASLQL 480 + + + P K FL DG D ++D ++ + ++ + Sbjct: 751 SKNNIKGNYPEIDKITNEFLEKIYFDGEKEYKPADGCDDAIDAINKKEKDIEKELNNILV 810 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLE---SKDRF--IHRQTMSNLTRF 535 + KI NLK H Y IE + K++E K F I + + NL Sbjct: 811 DIKKILKIPNLKYVH-AKYKYEIECPDNVPKSFLKEVEITSVKKGFVRIQNEEIKNLVEM 869 Query: 536 TTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAIL 595 L D+E +A F+ + + E E +A ++I+ +D A A + Sbjct: 870 ----LEDIEQEKKDAI-------YPFFQKIFHLFYEHYEKYISACRLISELDCLQAFAYV 918 Query: 596 AKEQNY-----------CRPIIDNST---NF-------IVKDGR---------------- 618 A ++ C +DN + N+ I KDG+ Sbjct: 919 ALNTSFPLTRPILHFMECENTMDNKSDDPNYGDDLNCEIEKDGKMGSENASKEKKPFLIL 978 Query: 619 ----HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 HP+V + FI N+ + C DK LLTGPNMGGKST LRQ A+ V Sbjct: 979 ENNIHPVVATLMPN-----FIPNNIYMGC--DKEKETTLLLTGPNMGGKSTLLRQTAISV 1031 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 I+AQ+G++VP++Y + IVDK+F+R+GS+DNL G+STF+VE+ + +++L Q+T S I Sbjct: 1032 ILAQIGAFVPSTYCELTIVDKIFTRLGSSDNLFEGKSTFLVELEDISNLLKQSTKYSLAI 1091 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK---SLKRFHNATLQ 791 LDE+GRGT++ DG +IA +T+E + + +CR + +TH+H L + K ++ +H +L Sbjct: 1092 LDELGRGTSSFDGTAIALSTLEQISDVIKCRCIFSTHYHLLVEEVKHNTNISNYH-MSLS 1150 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + D E IIFL+K I GI S+GI + KLAGLP +I A++ FE + Sbjct: 1151 IDDDQEKIIFLYKFIKGICPKSFGIHIAKLAGLPKEIIELAHEKSLLFENV 1201 >gi|120660058|gb|AAI30437.1| MutS homolog 3 (E. coli) [Homo sapiens] Length = 1137 Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 258/935 (27%), Positives = 464/935 (49%), Gaps = 123/935 (13%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ QYIE+K + D+++ G Y F +DA +A+R L I HL + Sbjct: 230 TPLELQYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYC-----HLDHNFMTAS 284 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLVTPGTL----- 139 +P H ++++L+ G+++ + +Q E + L+A SL R + L T TL Sbjct: 285 IPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNRSSLFSRKLTALYTKSTLIGEDV 344 Query: 140 ----------TEDQLLSPTDSNYLMAVAR----IRTE------WAIAWIDISTG-----I 174 D++++ T ++YL+ ++ +R + I + +TG Sbjct: 345 NPLIKLDDAVNVDEIMTDTSTSYLLCISENKENVRDKKKGNIFIGIVGVQPATGEVVFDS 404 Query: 175 FKISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA--------QPNV 226 F+ S S + L + + + P E++ E +L +V+V N+ Sbjct: 405 FQDSASRSE-LETRMSSLQPVELLLPSALSEQTE--ALIHRATSVSVQDDRIRVERMDNI 461 Query: 227 FFDHSISESRIADYYNITTVDTFGS-----FSQVEK---TAAAAAISYIKK---TQMVNK 275 +F++S + + ++Y TVD GS +EK + AA I Y+K+ +M++K Sbjct: 462 YFEYSHAFQAVTEFYAKDTVDIKGSQIISGIVNLEKPVICSLAAIIKYLKEFNLEKMLSK 521 Query: 276 PTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSITGAGGRLFAERI 334 P + + + I+ NLEIL+ + + + SLL +D++ T G R + + Sbjct: 522 PE-NFKQLSSKMEFMTINGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKLKKWV 580 Query: 335 ASPLTDSTKINTRLDSINFFIQN-PILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAV 393 PL +IN RLD+++ + + + I+ L+ PD+ R L + + ++ + Sbjct: 581 TQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIERGLCSIYHKKCSTQEFFL 640 Query: 394 I-------RDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTF 446 I + ++ I +N +++DL LR + ++ +L +E L +L++ Sbjct: 641 IVKTLYHLKSEFQAIIPAVNSHIQSDL---LRTVILEIPELLSPVEHYL-KILNEQAAKV 696 Query: 447 KRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI-KNLKIKHNNNLG--YFI 503 +D +D L + R +D+ + +I +++ E KI KN ++ G + I Sbjct: 697 GDKTELFKDLSDFPLIKKR--KDEIQGVIDEIRMHLQEIRKILKNPSAQYVTVSGQEFMI 754 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL--ES 561 E+ +S+ S + D ++ + ++RF + +++ R N L+++ E Sbjct: 755 EIKNSAVSCIPTD------WVKVGSTKAVSRFHSPFIVE-NYRHLNQLREQLVLDCSAEW 807 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 + L E SL A +A +D +LA +AK+ +YCRP + ++K+GRHP+ Sbjct: 808 LDFLEK-FSEHYHSLCKAVHHLATVDCIFSLAKVAKQGDYCRPTVQEERKIVIKNGRHPV 866 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 ++ L +Q ++ N+ DLS ++S ++ ++TGPNMGGKS++++Q ALI IMAQ+GS Sbjct: 867 IDVLLGEQDQ--YVPNNTDLS----EDSERVMIITGPNMGGKSSYIKQVALITIMAQIGS 920 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 YVPA A IGIVD +F+R+G+ADN+ GRSTFM E+ +TA I+ +AT+QS VILDE+GRG Sbjct: 921 YVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRG 980 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS----LKRFHNATLQVSDSN- 796 T+T DG++IA+AT+EY + L TH+ + +L K+ + +H L D + Sbjct: 981 TSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMGFLVSEDESK 1040 Query: 797 ----------EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI----------- 835 + + FL+++ GIA SYG+ V KLA +P ++ +A Sbjct: 1041 LDPGTAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAAHKSKELEGLINTK 1100 Query: 836 ---LKTFEKLY-HHNQKDMRLYYPEIQTKESKNNL 866 LK F KL+ HN +D++ + E +E++ +L Sbjct: 1101 RKRLKYFAKLWTMHNAQDLQKWTEEFNMEETQTSL 1135 >gi|158260735|dbj|BAF82545.1| unnamed protein product [Homo sapiens] Length = 1128 Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 258/935 (27%), Positives = 464/935 (49%), Gaps = 123/935 (13%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ QYIE+K + D+++ G Y F +DA +A+R L I HL + Sbjct: 221 TPLELQYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYC-----HLDHNFMTAS 275 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIES-PLEAKKRGNKSLVRRNVVRLVTPGTL----- 139 +P H ++++L+ G+++ + +Q E+ L+A SL R + L T TL Sbjct: 276 IPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNRSSLFSRKLTALYTKSTLIGEDV 335 Query: 140 ----------TEDQLLSPTDSNYLMAVAR----IRTE------WAIAWIDISTG-----I 174 D++++ T ++YL+ ++ +R + I + +TG Sbjct: 336 NPLIKLDDAVNVDEIMTDTSTSYLLCISENKENVRDKKKGNIFIGIVGVQPATGEVVFDS 395 Query: 175 FKISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA--------QPNV 226 F+ S S + L + + + P E++ E +L +V+V N+ Sbjct: 396 FQDSASRSE-LETRMSSLQPVELLLPSALSEQTE--ALIHRATSVSVQDDRIRVERMDNI 452 Query: 227 FFDHSISESRIADYYNITTVDTFGS-----FSQVEK---TAAAAAISYIKK---TQMVNK 275 +F++S + + ++Y TVD GS +EK + AA I Y+K+ +M++K Sbjct: 453 YFEYSHAFQAVTEFYAKDTVDIKGSQIISGIVNLEKPVICSLAAIIKYLKEFNLEKMLSK 512 Query: 276 PTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSITGAGGRLFAERI 334 P + + + I+ NLEIL+ + + + SLL +D++ T G R + + Sbjct: 513 PE-NFKQLSSKMEFMTINGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKLKKWV 571 Query: 335 ASPLTDSTKINTRLDSINFFIQN-PILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAV 393 PL +IN RLD+++ + + + I+ L+ PD+ R L + + ++ + Sbjct: 572 TQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIERGLCSIYHKKCSTQEFFL 631 Query: 394 I-------RDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTF 446 I + ++ I +N +++DL LR + ++ +L +E L +L++ Sbjct: 632 IVKTLYHLKSEFQAIIPAVNSHIQSDL---LRTVILEIPELLSPVEHYL-KILNEQAAKV 687 Query: 447 KRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI-KNLKIKHNNNLG--YFI 503 +D +D L + R +D+ + +I +++ E KI KN ++ G + I Sbjct: 688 GDKTELFKDLSDFPLIKKR--KDEIQGVIDEIRMHLQEIRKILKNPSAQYVTVSGQEFMI 745 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL--ES 561 E+ +S+ S + D ++ + ++RF + +++ R N L+++ E Sbjct: 746 EIKNSAVSCIPTD------WVKVGSTKAVSRFHSPFIVE-NYRHLNQLREQLVLDCSAEW 798 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 + L E SL A +A +D +LA +AK+ +YCRP + ++K+GRHP+ Sbjct: 799 LDFLEK-FSEHYHSLCKAVHHLATVDCIFSLAKVAKQGDYCRPTVQEERKIVIKNGRHPV 857 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 ++ L +Q ++ N+ DLS ++S ++ ++TGPNMGGKS++++Q ALI IMAQ+GS Sbjct: 858 IDVLLGEQDQ--YVPNNTDLS----EDSERVMIITGPNMGGKSSYIKQVALITIMAQIGS 911 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 YVPA A IGIVD +F+R+G+ADN+ GRSTFM E+ +TA I+ +AT+QS VILDE+GRG Sbjct: 912 YVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRG 971 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS----LKRFHNATLQVSDSN- 796 T+T DG++IA+AT+EY + L TH+ + +L K+ + +H L D + Sbjct: 972 TSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMGFLVSEDESK 1031 Query: 797 ----------EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI----------- 835 + + FL+++ GIA SYG+ V KLA +P ++ +A Sbjct: 1032 LDPGTAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAAHKSKELEGLINTK 1091 Query: 836 ---LKTFEKLY-HHNQKDMRLYYPEIQTKESKNNL 866 LK F KL+ HN +D++ + E +E++ +L Sbjct: 1092 RKRLKYFAKLWTMHNAQDLQKWTEEFNMEETQTSL 1126 >gi|120660370|gb|AAI30435.1| MutS homolog 3 (E. coli) [Homo sapiens] Length = 1137 Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 258/935 (27%), Positives = 464/935 (49%), Gaps = 123/935 (13%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ QYIE+K + D+++ G Y F +DA +A+R L I HL + Sbjct: 230 TPLELQYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYC-----HLDHNFMTAS 284 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIES-PLEAKKRGNKSLVRRNVVRLVTPGTL----- 139 +P H ++++L+ G+++ + +Q E+ L+A SL R + L T TL Sbjct: 285 IPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNRSSLFSRKLTALYTKSTLIGEDV 344 Query: 140 ----------TEDQLLSPTDSNYLMAVAR----IRTE------WAIAWIDISTG-----I 174 D++++ T ++YL+ ++ +R + I + +TG Sbjct: 345 NPLIKLDDAVNVDEIMTDTSTSYLLCISENKENVRDKKKGNIFIGIVGVQPATGEVVFDS 404 Query: 175 FKISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA--------QPNV 226 F+ S S + L + + + P E++ E +L +V+V N+ Sbjct: 405 FQDSASRSE-LETRMSSLQPVELLLPSALSEQTE--ALIHRATSVSVQDDRIRVERMDNI 461 Query: 227 FFDHSISESRIADYYNITTVDTFGS-----FSQVEK---TAAAAAISYIKK---TQMVNK 275 +F++S + + ++Y TVD GS +EK + AA I Y+K+ +M++K Sbjct: 462 YFEYSHAFQAVTEFYAKDTVDIKGSQIISGIVNLEKPVICSLAAIIKYLKEFNLEKMLSK 521 Query: 276 PTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSITGAGGRLFAERI 334 P + + + I+ NLEIL+ + + + SLL +D++ T G R + + Sbjct: 522 PE-NFKQLSSKMEFMTINGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKLKKWV 580 Query: 335 ASPLTDSTKINTRLDSINFFIQN-PILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAV 393 PL +IN RLD+++ + + + I+ L+ PD+ R L + + ++ + Sbjct: 581 TQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIERGLCSIYHKKCSTQEFFL 640 Query: 394 I-------RDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTF 446 I + ++ I +N +++DL LR + ++ +L +E L +L++ Sbjct: 641 IVKTLYHLKSEFQAIIPAVNSHIQSDL---LRTVILEIPELLSPVEHYL-KILNEQAAKV 696 Query: 447 KRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI-KNLKIKHNNNLG--YFI 503 +D +D L + R +D+ + +I +++ E KI KN ++ G + I Sbjct: 697 GDKTELFKDLSDFPLIKKR--KDEIQGVIDEIRMHLQEIRKILKNPSAQYVTVSGQEFMI 754 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL--ES 561 E+ +S+ S + D ++ + ++RF + +++ R N L+++ E Sbjct: 755 EIKNSAVSCIPTD------WVKVGSTKAVSRFHSPFIVE-NYRHLNQLREQLVLDCSAEW 807 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 + L E SL A +A +D +LA +AK+ +YCRP + ++K+GRHP+ Sbjct: 808 LDFLEK-FSEHYHSLCKAVHHLATVDCIFSLAKVAKQGDYCRPTVQEERKIVIKNGRHPV 866 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 ++ L +Q ++ N+ DLS ++S ++ ++TGPNMGGKS++++Q ALI IMAQ+GS Sbjct: 867 IDVLLGEQDQ--YVPNNTDLS----EDSERVMIITGPNMGGKSSYIKQVALITIMAQIGS 920 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 YVPA A IGIVD +F+R+G+ADN+ GRSTFM E+ +TA I+ +AT+QS VILDE+GRG Sbjct: 921 YVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRG 980 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS----LKRFHNATLQVSDSN- 796 T+T DG++IA+AT+EY + L TH+ + +L K+ + +H L D + Sbjct: 981 TSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMGFLVSEDESK 1040 Query: 797 ----------EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI----------- 835 + + FL+++ GIA SYG+ V KLA +P ++ +A Sbjct: 1041 LDPGTAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAAHKSKELEGLINTK 1100 Query: 836 ---LKTFEKLY-HHNQKDMRLYYPEIQTKESKNNL 866 LK F KL+ HN +D++ + E +E++ +L Sbjct: 1101 RKRLKYFAKLWTMHNAQDLQKWTEEFNMEETQTSL 1135 >gi|325526732|gb|EGD04249.1| DNA mismatch repair protein MutS [Burkholderia sp. TJI49] Length = 569 Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 198/575 (34%), Positives = 297/575 (51%), Gaps = 35/575 (6%) Query: 337 PLTDSTKINTRLDSINFFIQNPI--LINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVI 394 P S +R +I + P ++ ++ L+ DV R RL + P+D++ + Sbjct: 5 PPRASVAAQSRQQAIGALLDAPANASLDALRSALRQIADVERITGRLALLSARPRDLSSL 64 Query: 395 RD------GIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKR 448 RD +R I+ + D + A+E P L+S ++ + R Sbjct: 65 RDTFAALPALRERIS--PIVANADALARIDAALEP----PAECLDLLTSAIAPEPAAMVR 118 Query: 449 DGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSS 508 DGG + G DA LDE R + + + + L+ + T I NL++++N G++IEVT Sbjct: 119 DGGVIARGYDAELDELRDISENCGQFLIDLEARERARTGIANLRVEYNKVHGFYIEVTRG 178 Query: 509 SASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNA 568 + D + RQT+ N R+ T EL E++ +A AL E ++ + A Sbjct: 179 QTDKVPDD------YRRRQTLKNAERYITPELKTFEDKALSAQERALSRERALYDGVLQA 232 Query: 569 IIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQ 628 ++ + +A +D+ A A A+ ++ P + ++ GRHP+VE ++Q Sbjct: 233 LLPFIPECQRVASALAELDLLAAFAERARALDWVAPTFTDEIGIEIEQGRHPVVEAQVEQ 292 Query: 629 QSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYA 688 FIANDC KL L+TGPNMGGKSTF+RQ ALI +MA +GSYVPA A Sbjct: 293 -----FIANDCRFGAER-----KLLLITGPNMGGKSTFMRQTALIALMAYVGSYVPAKSA 342 Query: 689 HIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGL 748 G +D++F+R+G+AD+LA GRSTFMVEM E A+ILN AT QS V++DEIGRGT+T DGL Sbjct: 343 CFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILNDATPQSLVLMDEIGRGTSTFDGL 402 Query: 749 SIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPG 808 ++AWA +L N C L ATH+ ELT L + N L + GI+FLH V G Sbjct: 403 ALAWAIARHLLAHNGCYTLFATHYFELTQLPAEFPQAANVHLSAVEHGHGIVFLHAVNEG 462 Query: 809 IADHSYGIQVGKLAGLPNTVISRAYDILKTFEK---LYHHNQKDMRLYYPEIQTKESKNN 865 A+ SYG+QV +LAG+P VI A L E+ H Q D+ P E + Sbjct: 463 PANQSYGLQVAQLAGVPAPVIRAARKHLAYLEQQSATQHTPQLDLFSAQPAAGDFECADA 522 Query: 866 LSKNDKLF--VEKIKCLNLDEMSPLTALKTLYAVK 898 + D +EK++ ++ D++ P AL LY ++ Sbjct: 523 PTVPDTPHPALEKLREVDPDDLKPREALDLLYELR 557 >gi|1490521|gb|AAB06045.1| hMSH3 [Homo sapiens] gi|119616268|gb|EAW95862.1| mutS homolog 3 (E. coli), isoform CRA_b [Homo sapiens] Length = 1128 Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 258/935 (27%), Positives = 464/935 (49%), Gaps = 123/935 (13%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ QYIE+K + D+++ G Y F +DA +A+R L I HL + Sbjct: 221 TPLELQYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYC-----HLDHNFMTAS 275 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLVTPGTL----- 139 +P H ++++L+ G+++ + +Q E + L+A SL R + L T TL Sbjct: 276 IPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNRSSLFSRKLTALYTKSTLIGEDV 335 Query: 140 ----------TEDQLLSPTDSNYLMAVAR----IRTE------WAIAWIDISTG-----I 174 D++++ T ++YL+ ++ +R + I + +TG Sbjct: 336 NPLIKLDDAVNVDEIMTDTSTSYLLCISENKENVRDKKKGNIFIGIVGVQPATGEVVFDS 395 Query: 175 FKISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA--------QPNV 226 F+ S S + L + + + P E++ E +L +V+V N+ Sbjct: 396 FQDSASRSE-LETRMSSLQPVELLLPSALSEQTE--ALIHRATSVSVQDDRIRVERMDNI 452 Query: 227 FFDHSISESRIADYYNITTVDTFGS-----FSQVEK---TAAAAAISYIKK---TQMVNK 275 +F++S + + ++Y TVD GS +EK + AA I Y+K+ +M++K Sbjct: 453 YFEYSHAFQAVTEFYAKDTVDIKGSQIISGIVNLEKPVICSLAAIIKYLKEFNLEKMLSK 512 Query: 276 PTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSITGAGGRLFAERI 334 P + + + I+ NLEIL+ + + + SLL +D++ T G R + + Sbjct: 513 PE-NFKQLSSKMEFMTINGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKLKKWV 571 Query: 335 ASPLTDSTKINTRLDSINFFIQN-PILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAV 393 PL +IN RLD+++ + + + I+ L+ PD+ R L + + ++ + Sbjct: 572 TQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIERGLCSIYHKKCSTQEFFL 631 Query: 394 I-------RDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTF 446 I + ++ I +N +++DL LR + ++ +L +E L +L++ Sbjct: 632 IVKTLYHLKSEFQAIIPAVNSHIQSDL---LRTVILEIPELLSPVEHYL-KILNEQAAKV 687 Query: 447 KRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI-KNLKIKHNNNLG--YFI 503 +D +D L + R +D+ + +I +++ E KI KN ++ G + I Sbjct: 688 GDKTELFKDLSDFPLIKKR--KDEIQGVIDEIRMHLQEIRKILKNPSAQYVTVSGQEFMI 745 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL--ES 561 E+ +S+ S + D ++ + ++RF + +++ R N L+++ E Sbjct: 746 EIKNSAVSCIPTD------WVKVGSTKAVSRFHSPFIVE-NYRHLNQLREQLVLDCSAEW 798 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 + L E SL A +A +D +LA +AK+ +YCRP + ++K+GRHP+ Sbjct: 799 LDFLEK-FSEHYHSLCKAVHHLATVDCIFSLAKVAKQGDYCRPTVQEERKIVIKNGRHPV 857 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 ++ L +Q ++ N+ DLS ++S ++ ++TGPNMGGKS++++Q ALI IMAQ+GS Sbjct: 858 IDVLLGEQDQ--YVPNNTDLS----EDSERVMIITGPNMGGKSSYIKQVALITIMAQIGS 911 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 YVPA A IGIVD +F+R+G+ADN+ GRSTFM E+ +TA I+ +AT+QS VILDE+GRG Sbjct: 912 YVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRG 971 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS----LKRFHNATLQVSDSN- 796 T+T DG++IA+AT+EY + L TH+ + +L K+ + +H L D + Sbjct: 972 TSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMGFLVSEDESK 1031 Query: 797 ----------EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI----------- 835 + + FL+++ GIA SYG+ V KLA +P ++ +A Sbjct: 1032 LDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAAHKSKELEGLINTK 1091 Query: 836 ---LKTFEKLY-HHNQKDMRLYYPEIQTKESKNNL 866 LK F KL+ HN +D++ + E +E++ +L Sbjct: 1092 RKRLKYFAKLWTMHNAQDLQKWTEEFNMEETQTSL 1126 >gi|30089006|gb|AAP13535.1| mutS homolog 3 (E. coli) [Homo sapiens] Length = 1140 Score = 311 bits (796), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 258/935 (27%), Positives = 464/935 (49%), Gaps = 123/935 (13%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ QYIE+K + D+++ G Y F +DA +A+R L I HL + Sbjct: 233 TPLELQYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYC-----HLDHNFMTAS 287 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLVTPGTL----- 139 +P H ++++L+ G+++ + +Q E + L+A SL R + L T TL Sbjct: 288 IPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNRSSLFSRKLTALYTKSTLIGEDV 347 Query: 140 ----------TEDQLLSPTDSNYLMAVAR----IRTE------WAIAWIDISTG-----I 174 D++++ T ++YL+ ++ +R + I + +TG Sbjct: 348 NPLIKLDDAVNVDEIMTDTSTSYLLCISENKENVRDKKKGNIFIGIVGVQPATGEVVFDS 407 Query: 175 FKISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA--------QPNV 226 F+ S S + L + + + P E++ E +L +V+V N+ Sbjct: 408 FQDSASRSE-LETRMSSLQPVELLLPSALSEQTE--ALIHRATSVSVQDDRIRVERMDNI 464 Query: 227 FFDHSISESRIADYYNITTVDTFGS-----FSQVEK---TAAAAAISYIKK---TQMVNK 275 +F++S + + ++Y TVD GS +EK + AA I Y+K+ +M++K Sbjct: 465 YFEYSHAFQAVTEFYAKDTVDIKGSQIISGIVNLEKPVICSLAAIIKYLKEFNLEKMLSK 524 Query: 276 PTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSITGAGGRLFAERI 334 P + + + I+ NLEIL+ + + + SLL +D++ T G R + + Sbjct: 525 PE-NFKQLSSKMEFMTINGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKLKKWV 583 Query: 335 ASPLTDSTKINTRLDSINFFIQN-PILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAV 393 PL +IN RLD+++ + + + I+ L+ PD+ R L + + ++ + Sbjct: 584 TQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIERGLCSIYHKKCSTQEFFL 643 Query: 394 I-------RDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTF 446 I + ++ I +N +++DL LR + ++ +L +E L +L++ Sbjct: 644 IVKTLYHLKSEFQAIIPAVNSHIQSDL---LRTVILEIPELLSPVEHYL-KILNEQAAKV 699 Query: 447 KRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI-KNLKIKHNNNLG--YFI 503 +D +D L + R +D+ + +I +++ E KI KN ++ G + I Sbjct: 700 GDKTELFKDLSDFPLIKKR--KDEIQGVIDEIRMHLQEIRKILKNPSAQYVTVSGQEFMI 757 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL--ES 561 E+ +S+ S + D ++ + ++RF + +++ R N L+++ E Sbjct: 758 EIKNSAVSCIPTD------WVKVGSTKAVSRFHSPFIVE-NYRHLNQLREQLVLDCSAEW 810 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 + L E SL A +A +D +LA +AK+ +YCRP + ++K+GRHP+ Sbjct: 811 LDFLEK-FSEHYHSLCKAVHHLATVDCIFSLAKVAKQGDYCRPTVQEERKIVIKNGRHPV 869 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 ++ L +Q ++ N+ DLS ++S ++ ++TGPNMGGKS++++Q ALI IMAQ+GS Sbjct: 870 IDVLLGEQDQ--YVPNNTDLS----EDSERVMIITGPNMGGKSSYIKQVALITIMAQIGS 923 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 YVPA A IGIVD +F+R+G+ADN+ GRSTFM E+ +TA I+ +AT+QS VILDE+GRG Sbjct: 924 YVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRG 983 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS----LKRFHNATLQVSDSN- 796 T+T DG++IA+AT+EY + L TH+ + +L K+ + +H L D + Sbjct: 984 TSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMGFLVSEDESK 1043 Query: 797 ----------EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI----------- 835 + + FL+++ GIA SYG+ V KLA +P ++ +A Sbjct: 1044 LDPGTAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAAHKSKELEGLINTK 1103 Query: 836 ---LKTFEKLY-HHNQKDMRLYYPEIQTKESKNNL 866 LK F KL+ HN +D++ + E +E++ +L Sbjct: 1104 RKRLKYFAKLWTMHNAQDLQKWTEEFNMEETQTSL 1138 >gi|181842|gb|AAB47281.1| MSH3 [Homo sapiens] gi|49615092|dbj|BAD27111.1| hMSH3 protein [Homo sapiens] Length = 1137 Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 258/935 (27%), Positives = 464/935 (49%), Gaps = 123/935 (13%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ QYIE+K + D+++ G Y F +DA +A+R L I HL + Sbjct: 230 TPLELQYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYC-----HLDHNFMTAS 284 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLVTPGTL----- 139 +P H ++++L+ G+++ + +Q E + L+A SL R + L T TL Sbjct: 285 IPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNRSSLFSRKLTALYTKSTLIGEDV 344 Query: 140 ----------TEDQLLSPTDSNYLMAVAR----IRTE------WAIAWIDISTG-----I 174 D++++ T ++YL+ ++ +R + I + +TG Sbjct: 345 NPLIKLDDAVNVDEIMTDTSTSYLLCISENKENVRDKKKGNIFIGIVGVQPATGEVVFDS 404 Query: 175 FKISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA--------QPNV 226 F+ S S + L + + + P E++ E +L +V+V N+ Sbjct: 405 FQDSASRSE-LETRMSSLQPVELLLPSALSEQTE--ALIHRATSVSVQDDRIRVERMDNI 461 Query: 227 FFDHSISESRIADYYNITTVDTFGS-----FSQVEK---TAAAAAISYIKK---TQMVNK 275 +F++S + + ++Y TVD GS +EK + AA I Y+K+ +M++K Sbjct: 462 YFEYSHAFQAVTEFYAKDTVDIKGSQIISGIVNLEKPVICSLAAIIKYLKEFNLEKMLSK 521 Query: 276 PTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSITGAGGRLFAERI 334 P + + + I+ NLEIL+ + + + SLL +D++ T G R + + Sbjct: 522 PE-NFKQLSSKMEFMTINGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKLKKWV 580 Query: 335 ASPLTDSTKINTRLDSINFFIQN-PILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAV 393 PL +IN RLD+++ + + + I+ L+ PD+ R L + + ++ + Sbjct: 581 TQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIGRGLCSIYHKKCSTQEFFL 640 Query: 394 I-------RDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTF 446 I + ++ I +N +++DL LR + ++ +L +E L +L++ Sbjct: 641 IVKTLYHLKSEFQAIIPAVNSHIQSDL---LRTVILEIPELLSPVEHYL-KILNEQAAKV 696 Query: 447 KRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI-KNLKIKHNNNLG--YFI 503 +D +D L + R +D+ + +I +++ E KI KN ++ G + I Sbjct: 697 GDKTELFKDLSDFPLIKKR--KDEIQGVIDEIRMHLQEIRKILKNPSAQYVTVSGQEFMI 754 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL--ES 561 E+ +S+ S + D ++ + ++RF + +++ R N L+++ E Sbjct: 755 EIKNSAVSCIPTD------WVKVGSTKAVSRFHSPFIVE-NYRHLNQLREQLVLDCSAEW 807 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 + L E SL A +A +D +LA +AK+ +YCRP + ++K+GRHP+ Sbjct: 808 LDFLEK-FSEHYHSLCKAVHHLATVDCIFSLAKVAKQGDYCRPTVQEERKIVIKNGRHPV 866 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 ++ L +Q ++ N+ DLS ++S ++ ++TGPNMGGKS++++Q ALI IMAQ+GS Sbjct: 867 IDVLLGEQDQ--YVPNNTDLS----EDSERVMIITGPNMGGKSSYIKQVALITIMAQIGS 920 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 YVPA A IGIVD +F+R+G+ADN+ GRSTFM E+ +TA I+ +AT+QS VILDE+GRG Sbjct: 921 YVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRG 980 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS----LKRFHNATLQVSDSN- 796 T+T DG++IA+AT+EY + L TH+ + +L K+ + +H L D + Sbjct: 981 TSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMGFLVSEDESK 1040 Query: 797 ----------EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI----------- 835 + + FL+++ GIA SYG+ V KLA +P ++ +A Sbjct: 1041 LDPGTAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAAHKSKELEGLINTK 1100 Query: 836 ---LKTFEKLY-HHNQKDMRLYYPEIQTKESKNNL 866 LK F KL+ HN +D++ + E +E++ +L Sbjct: 1101 RKRLKYFAKLWTMHNAQDLQKWTEEFNMEETQTSL 1135 >gi|109077790|ref|XP_001110439.1| PREDICTED: DNA mismatch repair protein Msh3 [Macaca mulatta] Length = 1124 Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 259/934 (27%), Positives = 462/934 (49%), Gaps = 122/934 (13%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ QYIE+K + D+++ G Y F +DA +A+R L I HL + Sbjct: 218 TPLELQYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYC-----HLDHNFMTAS 272 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLVTPGTLTE--- 141 +P H ++++L+ G+++ + +Q E + L+A SL R + L T TL Sbjct: 273 IPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNRSSLFSRKLTALYTKSTLIGEDV 332 Query: 142 ------------DQLLSPTDSNYLMAVARIR-----TEWAIAWIDI-----STG-----I 174 D++++ T ++YL+ ++ + + I +I I +TG Sbjct: 333 NPLIKLDDAVNVDEIMTDTSTSYLLCISENKENVRDKKKGIVFIGIVGVQPATGEVVFDS 392 Query: 175 FKISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA--------QPNV 226 F+ S S + L + + + P E++ E L +V+V N+ Sbjct: 393 FQDSASRSE-LETRMSNLQPVELLLPSALSEQTEM--LIHRATSVSVQDDRIRVERMDNI 449 Query: 227 FFDHSISESRIADYYNITTVDTFGS-----FSQVEK---TAAAAAISYIKK---TQMVNK 275 +F++S + + ++Y TVD GS +EK + AA I Y+K+ +M++K Sbjct: 450 YFEYSHAFQAVTEFYAKDTVDIKGSQIISGIVNLEKPVICSLAAIIKYLKEFNLEKMLSK 509 Query: 276 PTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSITGAGGRLFAERI 334 P + + + I+ NLEIL+ + + + SLL +D++ T G R + + Sbjct: 510 PE-NFKQLSSKMEFMTINGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKLKKWV 568 Query: 335 ASPLTDSTKINTRLDSINFFIQN-PILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAV 393 PL +IN RLD+++ + + + I+ L+ PD+ R L + + ++ + Sbjct: 569 TQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIERGLCSIYHKKCSTQEFFL 628 Query: 394 I-------RDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTF 446 I + ++ I +N +++DL LR + ++ +L +E L +L++ Sbjct: 629 IVKTLYHLKSEFQAIIPAVNSHVQSDL---LRTVILEIPELLSPVEHYL-KILNEQAAKV 684 Query: 447 KRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI-KNLKIKHNNNLG--YFI 503 +D +D L + R +D+ + + +++ E KI KN ++ G + I Sbjct: 685 GDKTELFKDLSDFPLIKKR--KDEIQGVSDKIRMHLQEIRKILKNPSAQYVTVSGQEFMI 742 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL--ES 561 E+ +S+ S + D ++ + ++RF + +++ R N L+++ E Sbjct: 743 EIKNSAVSCIPTD------WVKVGSTKAVSRFHSPFVVE-NYRHLNQLREQLVLDCSAEW 795 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 + L E L A +A +D +LA +AK+ NYCRP + I+K+GRHP+ Sbjct: 796 LDFLEK-FSEHYHYLCKAVHHLATVDCIFSLAKVAKQGNYCRPTVQEERKIIIKNGRHPV 854 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 ++ L +Q ++ N DLS ++S ++ ++TGPNMGGKS++++Q ALI IMAQ+GS Sbjct: 855 IDVLLGEQDQ--YVPNSTDLS----EDSERVMIITGPNMGGKSSYIKQVALITIMAQIGS 908 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 YVPA A IGIVD +F+R+G+ADN+ GRSTFM E+ +TA I+ +AT+QS VILDE+GRG Sbjct: 909 YVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRG 968 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS----LKRFHNATLQVSDSN- 796 T+T DG++IA+AT+EY + L TH+ + +L K+ + +H L D + Sbjct: 969 TSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMGFLVSEDESK 1028 Query: 797 ---------EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI------------ 835 + + FL+++ GIA SYG+ V KLA +P ++ +A Sbjct: 1029 LDPGEEQVPDFVTFLYQITRGIAARSYGLNVAKLADIPGEILKKAAHKSKELEGLINTKR 1088 Query: 836 --LKTFEKLY-HHNQKDMRLYYPEIQTKESKNNL 866 LK F KL+ HN +D++ + E + +E++ +L Sbjct: 1089 KRLKYFAKLWTMHNAQDLQKWTEEFEMEETQTSL 1122 >gi|284813531|ref|NP_002430.3| DNA mismatch repair protein Msh3 [Homo sapiens] gi|317373576|sp|P20585|MSH3_HUMAN RecName: Full=DNA mismatch repair protein Msh3; Short=hMSH3; AltName: Full=Divergent upstream protein; Short=DUP; AltName: Full=Mismatch repair protein 1; Short=MRP1 Length = 1137 Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 257/935 (27%), Positives = 464/935 (49%), Gaps = 123/935 (13%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ QYIE+K + D+++ G Y F +DA +A+R L I HL + Sbjct: 230 TPLELQYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYC-----HLDHNFMTAS 284 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLVTPGTL----- 139 +P H ++++L+ G+++ + +Q E + L+A SL R + L T TL Sbjct: 285 IPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNRSSLFSRKLTALYTKSTLIGEDV 344 Query: 140 ----------TEDQLLSPTDSNYLMAVAR----IRTE------WAIAWIDISTG-----I 174 D++++ T ++YL+ ++ +R + I + +TG Sbjct: 345 NPLIKLDDAVNVDEIMTDTSTSYLLCISENKENVRDKKKGNIFIGIVGVQPATGEVVFDS 404 Query: 175 FKISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA--------QPNV 226 F+ S S + L + + + P E++ E +L +V+V N+ Sbjct: 405 FQDSASRSE-LETRMSSLQPVELLLPSALSEQTE--ALIHRATSVSVQDDRIRVERMDNI 461 Query: 227 FFDHSISESRIADYYNITTVDTFGS-----FSQVEK---TAAAAAISYIKK---TQMVNK 275 +F++S + + ++Y TVD GS +EK + AA I Y+K+ +M++K Sbjct: 462 YFEYSHAFQAVTEFYAKDTVDIKGSQIISGIVNLEKPVICSLAAIIKYLKEFNLEKMLSK 521 Query: 276 PTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSITGAGGRLFAERI 334 P + + + I+ NLEIL+ + + + SLL +D++ T G R + + Sbjct: 522 PE-NFKQLSSKMEFMTINGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKLKKWV 580 Query: 335 ASPLTDSTKINTRLDSINFFIQN-PILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAV 393 PL +IN RLD+++ + + + I+ L+ PD+ R L + + ++ + Sbjct: 581 TQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIERGLCSIYHKKCSTQEFFL 640 Query: 394 I-------RDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTF 446 I + ++ I +N +++DL LR + ++ +L +E L +L++ Sbjct: 641 IVKTLYHLKSEFQAIIPAVNSHIQSDL---LRTVILEIPELLSPVEHYL-KILNEQAAKV 696 Query: 447 KRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI-KNLKIKHNNNLG--YFI 503 +D +D L + R +D+ + +I +++ E KI KN ++ G + I Sbjct: 697 GDKTELFKDLSDFPLIKKR--KDEIQGVIDEIRMHLQEIRKILKNPSAQYVTVSGQEFMI 754 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL--ES 561 E+ +S+ S + D ++ + ++RF + +++ R N L+++ E Sbjct: 755 EIKNSAVSCIPTD------WVKVGSTKAVSRFHSPFIVE-NYRHLNQLREQLVLDCSAEW 807 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 + L E SL A +A +D +LA +AK+ +YCRP + ++K+GRHP+ Sbjct: 808 LDFLEK-FSEHYHSLCKAVHHLATVDCIFSLAKVAKQGDYCRPTVQEERKIVIKNGRHPV 866 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 ++ L +Q ++ N+ DLS ++S ++ ++TGPNMGGKS++++Q ALI IMAQ+GS Sbjct: 867 IDVLLGEQDQ--YVPNNTDLS----EDSERVMIITGPNMGGKSSYIKQVALITIMAQIGS 920 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 YVPA A IGIVD +F+R+G+ADN+ G+STFM E+ +TA I+ +AT+QS VILDE+GRG Sbjct: 921 YVPAEEATIGIVDGIFTRMGAADNIYKGQSTFMEELTDTAEIIRKATSQSLVILDELGRG 980 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS----LKRFHNATLQVSDSN- 796 T+T DG++IA+AT+EY + L TH+ + +L K+ + +H L D + Sbjct: 981 TSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMGFLVSEDESK 1040 Query: 797 ----------EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI----------- 835 + + FL+++ GIA SYG+ V KLA +P ++ +A Sbjct: 1041 LDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAAHKSKELEGLINTK 1100 Query: 836 ---LKTFEKLY-HHNQKDMRLYYPEIQTKESKNNL 866 LK F KL+ HN +D++ + E +E++ +L Sbjct: 1101 RKRLKYFAKLWTMHNAQDLQKWTEEFNMEETQTSL 1135 >gi|68299763|ref|NP_034959.2| DNA mismatch repair protein Msh3 [Mus musculus] Length = 1095 Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 259/930 (27%), Positives = 455/930 (48%), Gaps = 104/930 (11%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ QY+++K + D+++ G Y F +DA +A+R L I HL + Sbjct: 188 TPLELQYLDMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYC-----HLDHNFMTAS 242 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLVTPGTLTE--- 141 +P H ++++L+ G+++ + +Q E + L+A S+ R + L T TL Sbjct: 243 IPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNKSSVFSRKLTALYTKSTLIGEDV 302 Query: 142 ------------DQLLSPTDSNYLMAVARIRT----------EWAIAWIDISTG--IFKI 177 D++++ T +NYL+ + + I + +TG +F Sbjct: 303 NPLIRLDDSVNIDEVMTDTSTNYLLCIYEEKENIKDKKKGNLSVGIVGVQPATGEVVFDC 362 Query: 178 STSNHDRLI--SDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQP--------NVF 227 + RL + I + P E++ +LS + L + NV+V N + Sbjct: 363 FQDSASRLELETRISSLQPVELLLP-SDLS-VPTEMLIQRATNVSVRDDRIRVERMNNTY 420 Query: 228 FDHSISESRIADYYNITTVDTFGSFS-----QVEK---TAAAAAISYIKK---TQMVNKP 276 F++S + + ++Y VD+ GS S +EK A AA I Y+K+ +M++KP Sbjct: 421 FEYSHAFQTVTEFYAREIVDSQGSQSLSGVINLEKPVICALAAVIRYLKEFNLEKMLSKP 480 Query: 277 TIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSITGAGGRLFAERIA 335 + + + I+ NLEIL+ + + + SLL +D++ T G R + Sbjct: 481 E-SFKQLSSGMEFMRINGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKLKNWVT 539 Query: 336 SPLTDSTKINTRLDSINFFIQN-PILINPIQKILKSSPDVPRSLSRL---KIGRGE---- 387 PL +IN RLD+++ + + + I+ +L+ PDV R L + K E Sbjct: 540 QPLLKLREINARLDAVSDVLHSESSVFEQIENLLRKLPDVERGLCSIYHKKCSTQEFFLI 599 Query: 388 PKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFK 447 K + ++ +++ + +N +++DL LR + + +L +E L +L+ Sbjct: 600 VKSLCQLKSELQALMPAVNSHVQSDL---LRALIVEAPELLSPVEHYLK-VLNGPAAKVG 655 Query: 448 RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIE 504 +D +D L + R +++ + +I S+Q++ E KI +L+ + + IE Sbjct: 656 DKTELFKDLSDFPLIKKR--KNEIQEVIHSIQMRLQEFRKILKLPSLQYVTVSGQEFMIE 713 Query: 505 VTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL-IELESFE 563 + +S+ S + D ++ + ++RF +++ R+ +L E Sbjct: 714 IKNSAVSCIPAD------WVKVGSTKAVSRFHPPFIVESYRRLNQLREQLVLDCNAEWLG 767 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L N E +L A +A +D +LA +AK+ NYCRP + I+K+GRHP+++ Sbjct: 768 FLEN-FGEHYHTLCKAVDHLATVDCIFSLAKVAKQGNYCRPTLQEEKKIIIKNGRHPMID 826 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 L +Q F+ N LS ++S ++ ++TGPNMGGKS++++Q AL+ IMAQ+GSYV Sbjct: 827 VLLGEQDQ--FVPNSTSLS----QDSERVMIITGPNMGGKSSYIKQVALVTIMAQIGSYV 880 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA A IGIVD +F+R+G+ADN+ GRSTFM E+ +TA I+ +A+ QS VILDE+GRGT+ Sbjct: 881 PAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRRASPQSLVILDELGRGTS 940 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS----LKRFHNATLQVSDSN--- 796 T DG++IA+AT+EY + L TH+ + +L K + +H L D + Sbjct: 941 THDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKCYPEQVGNYHMGFLVNEDESKQD 1000 Query: 797 --------EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 + + FL+++ GIA SYG+ V KLA +P V+ +A K E L +K Sbjct: 1001 SGDMEQMPDSVTFLYQITRGIAARSYGLNVAKLADVPREVLQKAAHKSKELEGLVSLRRK 1060 Query: 849 DMRLYYPEIQTKESKNNLSKNDKLFVEKIK 878 + + T K+ + DKL +E+I+ Sbjct: 1061 RLECFTDLWTTHSVKDLHTWADKLEMEEIQ 1090 >gi|332224846|ref|XP_003261579.1| PREDICTED: LOW QUALITY PROTEIN: DNA mismatch repair protein Msh3-like [Nomascus leucogenys] Length = 1125 Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 255/931 (27%), Positives = 454/931 (48%), Gaps = 127/931 (13%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ QYIE+K + D+++ G Y F +DA +A+R L I HL + Sbjct: 218 TPLELQYIEMKQQHRDAVLCVECGYKYRFFGEDAEIAARELNIYC-----HLDHNFMTAS 272 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIES-PLEAKKRGNKSLVRRNVVRLVTPGTL----- 139 +P H ++++L+ G+++ + +Q E+ L+A SL R + + T TL Sbjct: 273 IPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNRSSLFSRKLTAIYTKSTLIGEDV 332 Query: 140 ----------TEDQLLSPTDSNYLMAVAR----IRTE------WAIAWIDISTG-----I 174 D++++ T ++YL+ ++ +R + I + +TG Sbjct: 333 NPLIKLDDAVNVDEIMTDTSTSYLLCISENKENVRDKKKGNIFIGIVGVQPATGEVVFDS 392 Query: 175 FKISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA--------QPNV 226 F+ S S + L + + + P E++ E +L +V+V N+ Sbjct: 393 FQDSASRSE-LETRMSSLQPVELLLPSALSEQTE--ALVHRATSVSVQDDRIRVERMDNI 449 Query: 227 FFDHSISESRIADYYNITTVDTFGS-----FSQVEK---TAAAAAISYIKK---TQMVNK 275 +F++S + + ++Y TVD GS +EK + AA I Y+K+ +M++K Sbjct: 450 YFEYSHAFQAVTEFYAKDTVDIKGSQIISGIVNLEKPVICSLAAIIKYLKEFNLEKMLSK 509 Query: 276 PTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSITGAGGRLFAERI 334 P + + + I+ NLEIL+ + + + SLL +D++ T G R + + Sbjct: 510 PE-NFKQLSSKMEFMTINGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKLKKWV 568 Query: 335 ASPLTDSTKINTRLDSINFFIQN-PILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAV 393 PL +IN RLD+++ + + + I+ L+ PD+ R L + + ++ + Sbjct: 569 TQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIERGLCSIYHKKCSTQEFFL 628 Query: 394 I-------RDGIRSGINILNLFLKNDL--------PEELRGAVEKLKKLPQSLEKT--LS 436 I + ++ I +N +++DL PE L LK L + K + Sbjct: 629 IVKTLYHLKSEFQAIIPAVNSHIQSDLLRTIILEIPELLSPVEHYLKILNEQAAKVGDKT 688 Query: 437 SMLSD--DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + D D P+ K+ +D +DE R + +RI+ + +Y + + Sbjct: 689 ELFKDLSDFPSIKKR----KDEIQGVIDEIRMHLQEIRRILKNPSAQYVTVSGQE----- 739 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 + IE+ +S+ S + D ++ + ++RF + +++ R N Sbjct: 740 ------FMIEIKNSAVSCIPTD------WVKVGSTKAVSRFHSPFIVE-NYRHLNQLREQ 786 Query: 555 LLIEL--ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNF 612 L+++ E + L E SL A +A +D +LA +AK+ +YCRP + Sbjct: 787 LVLDCSAEWLDFLEK-FSEHYHSLCKAVHHLATVDCIFSLAKVAKQGDYCRPTVQEERKI 845 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 ++K+GRHP+++ L +Q ++ N DLS ++S ++ ++TGPNMGGKS++++Q AL Sbjct: 846 VIKNGRHPVIDVLLGEQDQ--YVPNSTDLS----EDSERVMIITGPNMGGKSSYIKQVAL 899 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 I IMAQ+GSYVPA A IGIVD +F+R+G+ADN+ GRSTFM E+ +TA I+ +AT+QS Sbjct: 900 ITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSL 959 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS----LKRFHNA 788 VILDE+GRGT+T DG++IA+AT+EY + L TH+ + +L K+ + +H Sbjct: 960 VILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMG 1019 Query: 789 TLQVSDSN-----------EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILK 837 L D + + + FL+++ GIA SYG+ V KLA +P ++ +A K Sbjct: 1020 FLVSEDESKLDPGAEEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAAHKSK 1079 Query: 838 TFEKLYHHNQKDMRLYYPEIQTKESKNNLSK 868 E L + +K ++ Y+ E+ T + +L K Sbjct: 1080 ELEGLINTKRKRLK-YFAELWTMHNAQDLQK 1109 >gi|46124901|ref|XP_387004.1| hypothetical protein FG06828.1 [Gibberella zeae PH-1] Length = 1004 Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 235/748 (31%), Positives = 357/748 (47%), Gaps = 88/748 (11%) Query: 164 AIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQ 223 +AW+D+STG F +N L + + R+ PRE++ +++L +F L Sbjct: 261 GLAWLDLSTGHFYTQQANLASLPAILSRLSPRELLL-DQDLQAFPDHGIFALLAEDRHII 319 Query: 224 PNVFFDHSISESRIADYYNITTV----DTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIG 279 H S A++ + D +FS E AA + Y+K + Sbjct: 320 SYAPRPHDSSLLNPAEWTPMLESALPEDEASAFSSAEVHAAGFLLGYVKDQLQGASMKLQ 379 Query: 280 YPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPL 338 P R + + ID + LE+ +T+ G+ SLL I ++T +G RL E +++P Sbjct: 380 PPLRTENVQIMSIDKNSLRALEVKQTIRDGAFRGSLLHAIRRTVTKSGARLLNEWLSAPS 439 Query: 339 TDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDI------- 391 T I R D FI +P L + + +L+ S D R + + +GRG+ D+ Sbjct: 440 TSLELITGRQDLAALFIDDPNLSDSVVLLLRRSYDSQRLVQKFTLGRGDADDLLALASTI 499 Query: 392 ------------------AVIRDGIRSGINILNLFLKNDLPEELRGAV--EKLKKLPQSL 431 I + S I+ +N+ L + +R A+ E ++ ++ Sbjct: 500 DATKEIVDLLKKANTASRKAISPCLTSMISRINMTRPLKLAQRIRDAIDEEGIELQHEAQ 559 Query: 432 EKTLSSMLS------------DD---LPTFKRDGGF-LRDGADASLDETRSLRDQS---- 471 + S ML+ DD LP KR +RD A +ET ++ + Sbjct: 560 DSETSQMLALAQDVASNEGSQDDIASLPKGKRKRPVSIRDHY-AEDNETWIMKPAASPTL 618 Query: 472 KRIIASLQL----------KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKD 521 KR+ A L E K +L ++ LG+ + A L Sbjct: 619 KRLHAGLAALIQEKAELNETLCERLKAPSLTLRWTPGLGHIAHIRGRDARNLAN------ 672 Query: 522 RFIHRQTMSNLTR-FTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNAS 580 + + S TR F E L R+ E F L +++ L + Sbjct: 673 --VQALSSSRSTRSFHITEWTHLGQRLDQVRTQIRAEEQAVFHSLREHVVKNLVKLRRNA 730 Query: 581 QVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCD 640 V+ +DI+ + A LA+EQ+ RP+++N+T+ + GRHP VE L +Q + F+ NDC Sbjct: 731 NVLDELDIATSFAKLAQEQSLVRPVLNNTTSHTIMGGRHPTVEGGLFEQG-RSFVRNDCL 789 Query: 641 LSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRV 700 + P D G++W +TGPNM GKSTFLRQNALI I+AQ+G YVPASYA +GIVD +FSRV Sbjct: 790 VGSPKD---GRVWFITGPNMAGKSTFLRQNALITILAQIGCYVPASYAELGIVDAIFSRV 846 Query: 701 GSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHE 760 GSADNL +STFMVEM+ETA+IL QAT +SFVI+DEIGRGT DG ++A+A + +L Sbjct: 847 GSADNLYQDQSTFMVEMLETAAILKQATPRSFVIMDEIGRGTTPEDGTAVAFACLHHLAT 906 Query: 761 TNRCRGLLATHFHELTDLSK-----SLKRFHNATLQ------VSDSNEGIIFLHKVIPGI 809 N+CR L ATHFH + DL+ S + +Q V D G + HK+ G+ Sbjct: 907 VNQCRTLFATHFHSVADLAAAEGLCSTETDEGGIVQTYCTDVVEDGQGGFFYNHKLQKGV 966 Query: 810 ADHSYGIQVGKLAGLPNTVISRAYDILK 837 S+ ++V KLAG+P+ I A +L+ Sbjct: 967 NRRSHALKVAKLAGMPDRAIDMARQVLQ 994 Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 2/117 (1%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 + ++ R+G FYEL+F+ A L I + + + G + M V + +++ L++ Sbjct: 79 NCVLLTRVGGFYELYFEHADEYGPLLNIKVANKKTNAGL-VSMLDVSPSSPVLFLKILVQ 137 Query: 101 -IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAV 156 + +AI E+ + AK + + R V R+VTPGTL ++ + P +NY+MA+ Sbjct: 138 DLNRHVAIAEEFPNSPTAKVKSGGLMHDRQVTRIVTPGTLIDENFMDPYANNYVMAI 194 >gi|293345106|ref|XP_001065837.2| PREDICTED: mutS homolog 3 (E. coli) [Rattus norvegicus] Length = 1105 Score = 308 bits (788), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 258/938 (27%), Positives = 464/938 (49%), Gaps = 106/938 (11%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ QY+++K ++ D+++ G Y F +DA +A+R L I HL + Sbjct: 188 TPLELQYLDVKQLHKDAVLCVECGYKYRFFGEDAEIAARELNIYC-----HLDHNFMTAS 242 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESP-LEAKKRGNKSLVRRNVVRLVTPGTLTE--- 141 +P H ++++L+ G+++ + +Q E+ L+A S+ R + L T TL Sbjct: 243 IPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNKSSVFSRKLTALYTKSTLIGEDV 302 Query: 142 ------------DQLLSPTDSNYLMAV----------ARIRTEWAIAWIDISTG--IFKI 177 D+ ++ T +NYL+ + + + I + +TG +F Sbjct: 303 NPLIRLDDSVNIDEAVTDTSTNYLLCIYEEKENIKDKKKGNISFGIVGVQPATGEVVFDC 362 Query: 178 STSNHDRLI--SDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQP--------NVF 227 + RL + + P E++ + E L V+V N Sbjct: 363 FQDSASRLELETRTASLQPVELLLPSQLSEPTEM--LIRRATAVSVGDDRIRVERMNNTH 420 Query: 228 FDHSISESRIADYYNITTVDTFGSFS-----QVEK---TAAAAAISYIKK---TQMVNKP 276 F++S + + ++Y TVDT GS S +EK A AA I Y+K+ ++++KP Sbjct: 421 FEYSHAFQTVMEFYARETVDTQGSQSLSGVIHLEKPVICALAAIIRYLKEFNLDKVLSKP 480 Query: 277 TIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSITGAGGRLFAERIA 335 + + + I+ NLEIL+ + + + SLL +D++ T G R + + Sbjct: 481 E-NFKQLSSGMEFMRINGTTLRNLEILQNQTDMKTRGSLLWVLDHTKTSFGRRKLKKWVT 539 Query: 336 SPLTDSTKINTRLDSINFFIQN-PILINPIQKILKSSPDVPRSLSRL---KIGRGE---- 387 PL IN RLD+I+ + + + I+ +L+ PDV R L + K E Sbjct: 540 QPLLKLRDINARLDAISDVLHSESSVFEQIENLLRKLPDVERGLCSIYHKKCSTQEFFLI 599 Query: 388 PKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFK 447 K++ ++ +++ + +N +++DL LR V ++ +L +E L +L++ Sbjct: 600 VKNLCQLKSELQALMPAVNSHVQSDL---LRARVLEVPELLSPVEPYLK-VLNEQAAKAG 655 Query: 448 RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIE 504 +D +D L + R +++ + +I S+Q+ E KI +L+ + + +E Sbjct: 656 DKTELFKDLSDFPLIKKR--KNEIQEVIHSIQMHLQELRKILKLPSLQYVTVSGQEFMVE 713 Query: 505 VTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL-IELESFE 563 + +S+ S + D ++ + ++RF + +++ R+ +L E + Sbjct: 714 IKNSAVSCVPTD------WVKVGSTKAVSRFHSPFVVENYRRLNQLREQLVLDCNAEWLD 767 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L N E +L A +A +D +LA +AK+ +YCRP + I+K+GRHP+++ Sbjct: 768 FLEN-FGEHYHTLCKAVDHLATVDCIFSLAKVAKQGSYCRPTLQEEKKIIIKNGRHPMID 826 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 L +Q F+ N +LS ++S ++ ++TGPNMGGKS++++Q AL+VIMAQ+GSYV Sbjct: 827 VLLGEQDQ--FVPNSTNLS----QDSERVMIITGPNMGGKSSYIKQVALVVIMAQIGSYV 880 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA A IGIVD +F+R G+ADN+ GRSTFM E+ +TA I+ +AT +S VILDE+GRGT+ Sbjct: 881 PAEEATIGIVDGIFTRRGAADNIYKGRSTFMEELTDTAEIIQKATQRSLVILDELGRGTS 940 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK----SLKRFHNATLQVSDSN--- 796 T DG++IA+AT+EY + L TH+ + +L K + +H L D + Sbjct: 941 THDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKRYPEQVGNYHMGFLVNEDGSKQD 1000 Query: 797 --------EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 + + FL+++ GIA SYG+ V KLA +P ++ +A K E L + +K Sbjct: 1001 SGDMEQMPDSVTFLYQITRGIAARSYGLNVAKLADVPREILQKAAHKSKELEGLVNLRRK 1060 Query: 849 DMRLYYPEIQTKESKNNL-SKNDKLFVEKIKCLNLDEM 885 + Y+ ++ T S +L ++ +L +++I+ +EM Sbjct: 1061 RLE-YFIDLWTTHSVKDLHTRAAELEIQEIQTSPHNEM 1097 >gi|300794684|ref|NP_001178886.1| DNA mismatch repair protein Msh3 [Rattus norvegicus] Length = 1105 Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 258/938 (27%), Positives = 464/938 (49%), Gaps = 106/938 (11%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ QY+++K ++ D+++ G Y F +DA +A+R L I HL + Sbjct: 188 TPLELQYLDVKQLHKDAVLCVECGYKYRFFGEDAEIAARELNIYC-----HLDHNFMTAS 242 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESP-LEAKKRGNKSLVRRNVVRLVTPGTLTE--- 141 +P H ++++L+ G+++ + +Q E+ L+A S+ R + L T TL Sbjct: 243 IPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNKSSVFSRKLTALYTKSTLIGEDV 302 Query: 142 ------------DQLLSPTDSNYLMAV----------ARIRTEWAIAWIDISTG--IFKI 177 D+ ++ T +NYL+ + + + I + +TG +F Sbjct: 303 NPLIRLDDSVNIDEAVTDTSTNYLLCIYEEKENIKDKKKGNISFGIVGVQPATGEVVFDC 362 Query: 178 STSNHDRLI--SDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQP--------NVF 227 + RL + + P E++ + E L V+V N Sbjct: 363 FQDSASRLELETRTASLQPVELLLPSQLSEPTEM--LIRRATAVSVGDDRIRVERMNNTH 420 Query: 228 FDHSISESRIADYYNITTVDTFGSFS-----QVEK---TAAAAAISYIKK---TQMVNKP 276 F++S + + ++Y TVDT GS S +EK A AA I Y+K+ ++++KP Sbjct: 421 FEYSHAFQTVMEFYARETVDTQGSQSLSGVIHLEKPVICALAAIIRYLKEFNLDKVLSKP 480 Query: 277 TIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSITGAGGRLFAERIA 335 + + + I+ NLEIL+ + + + SLL +D++ T G R + + Sbjct: 481 E-NFKQLSSGMEFMRINGTTLRNLEILQNQTDMKTRGSLLWVLDHTKTSFGRRKLKKWVT 539 Query: 336 SPLTDSTKINTRLDSINFFIQN-PILINPIQKILKSSPDVPRSLSRL---KIGRGE---- 387 PL IN RLD+I+ + + + I+ +L+ PDV R L + K E Sbjct: 540 QPLLKLRDINARLDAISDVLHSESSVFEQIENLLRKLPDVERGLCSIYHKKCSTQEFFLI 599 Query: 388 PKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFK 447 K++ ++ +++ + +N +++DL LR V ++ +L +E L +L++ Sbjct: 600 VKNLCQLKSELQALMPAVNSHVQSDL---LRARVLEVPELLSPVEPYLK-VLNEQAAKAG 655 Query: 448 RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIE 504 +D +D L + R +++ + +I S+Q+ E KI +L+ + + +E Sbjct: 656 DKTELFKDLSDFPLIKKR--KNEIQEVIHSIQMHLQELRKILKLPSLQYVTVSGQEFMVE 713 Query: 505 VTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL-IELESFE 563 + +S+ S + D ++ + ++RF + +++ R+ +L E + Sbjct: 714 IKNSAVSCVPTD------WVKVGSTKAVSRFHSPFVVENYRRLNQLREQLVLDCNAEWLD 767 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L N E +L A +A +D +LA +AK+ +YCRP + I+K+GRHP+++ Sbjct: 768 FLEN-FGEHYHTLCKAVDHLATVDCIFSLAKVAKQGSYCRPTLQEEKKIIIKNGRHPMID 826 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 L +Q F+ N +LS ++S ++ ++TGPNMGGKS++++Q AL+VIMAQ+GSYV Sbjct: 827 VLLGEQDQ--FVPNSTNLS----QDSERVMIITGPNMGGKSSYIKQVALVVIMAQIGSYV 880 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA A IGIVD +F+R G+ADN+ GRSTFM E+ +TA I+ +AT +S VILDE+GRGT+ Sbjct: 881 PAEEATIGIVDGIFTRRGAADNIYKGRSTFMEELTDTAEIIQKATQRSLVILDELGRGTS 940 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK----SLKRFHNATLQVSDSN--- 796 T DG++IA+AT+EY + L TH+ + +L K + +H L D + Sbjct: 941 THDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKRYPEQVGNYHMGFLVNEDGSKQD 1000 Query: 797 --------EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 + + FL+++ GIA SYG+ V KLA +P ++ +A K E L + +K Sbjct: 1001 SGDMEQMPDSVTFLYQITRGIAARSYGLNVAKLADVPREILQKAAHKSKELEGLVNLRRK 1060 Query: 849 DMRLYYPEIQTKESKNNL-SKNDKLFVEKIKCLNLDEM 885 + Y+ ++ T S +L ++ +L +++I+ +EM Sbjct: 1061 RLE-YFIDLWTTHSVKDLHTRAAELEIQEIQTSPHNEM 1097 >gi|187956273|gb|AAI50760.1| MutS homolog 3 (E. coli) [Mus musculus] Length = 1095 Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 257/930 (27%), Positives = 454/930 (48%), Gaps = 104/930 (11%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ QY+++K + D+++ G Y F +DA +A+R L I HL + Sbjct: 188 TPLELQYLDMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYC-----HLDHNFMTAS 242 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESP-LEAKKRGNKSLVRRNVVRLVTPGTLTE--- 141 +P H ++++L+ G+++ + +Q E+ L+A S+ R + L T TL Sbjct: 243 IPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNKSSVFSRKLTALYTKSTLIGEDV 302 Query: 142 ------------DQLLSPTDSNYLMAVARIRT----------EWAIAWIDISTG--IFKI 177 D++++ +NYL+ + + + + +TG +F Sbjct: 303 NPLIRLDDSVNIDEVMTDISTNYLLCIYEEKENIKDKKKGNLSVGVVGVQPATGEVVFDC 362 Query: 178 STSNHDRLI--SDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQP--------NVF 227 + RL + I + P E++ +LS + L + NV+V N + Sbjct: 363 FQDSASRLELETRISSLQPVELLLP-SDLS-VPTEMLIQRATNVSVRDDRIRVERMNNTY 420 Query: 228 FDHSISESRIADYYNITTVDTFGSFS-----QVEK---TAAAAAISYIKK---TQMVNKP 276 F++S + + ++Y VD+ GS S +EK A AA I Y+K+ +M++KP Sbjct: 421 FEYSHAFQTVTEFYAREIVDSQGSQSLSGVINLEKPVICALAAVIRYLKEFNLEKMLSKP 480 Query: 277 TIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSITGAGGRLFAERIA 335 + + + I+ NLEIL+ + + + SLL +D++ T G R + Sbjct: 481 E-SFKQLSSGMEFMRINGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKLKNWVT 539 Query: 336 SPLTDSTKINTRLDSINFFIQN-PILINPIQKILKSSPDVPRSLSRL---KIGRGE---- 387 PL +IN RLD+++ + + + I+ +L+ PDV R L + K E Sbjct: 540 QPLLKLREINARLDAVSDVLHSESSVFEQIENLLRKLPDVERGLCSIYHKKCSTQEFFLI 599 Query: 388 PKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFK 447 K + ++ +++ + +N +++DL LR + + +L +E L +L+ Sbjct: 600 VKSLCQLKSELQALMPAVNSHVQSDL---LRALIVEAPELLSPVEHYLK-VLNGPAAKVG 655 Query: 448 RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIE 504 +D +D L + R +++ + +I S+Q++ E KI +L+ + + IE Sbjct: 656 DKTELFKDLSDFPLIKKR--KNEIQEVIHSIQMRLQEFRKILKLPSLQYVTVSGQEFMIE 713 Query: 505 VTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL-IELESFE 563 + +S+ S + D ++ + ++RF +++ R+ +L E Sbjct: 714 IKNSAVSCIPAD------WVKVGSTKAVSRFHPPFIVESYRRLNQLREQLVLDCNAEWLG 767 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L N E +L A +A +D +LA +AK+ NYCRP + I+K+GRHP+++ Sbjct: 768 FLEN-FGEHYHTLCKAVDHLATVDCIFSLAKVAKQGNYCRPTLQEEKKIIIKNGRHPMID 826 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 L +Q F+ N LS ++S ++ ++TGPNMGGKS++++Q AL+ IMAQ+GSYV Sbjct: 827 VLLGEQDQ--FVPNSTSLS----QDSERVMIITGPNMGGKSSYIKQVALVTIMAQIGSYV 880 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA A IGIVD +F+R+G+ADN+ GRSTFM E+ +TA I+ +A+ QS VILDE+GRGT+ Sbjct: 881 PAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRRASPQSLVILDELGRGTS 940 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS----LKRFHNATLQVSDSN--- 796 T DG++IA+AT+EY + L TH+ + +L K + +H L D + Sbjct: 941 THDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKCYPEQVGNYHMGFLVNEDESKQD 1000 Query: 797 --------EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 + + FL+++ GIA SYG+ V KLA +P V+ +A K E L +K Sbjct: 1001 SGDMEQMPDSVTFLYQITRGIAARSYGLNVAKLADVPREVLQKAAHKSKELEGLVSLRRK 1060 Query: 849 DMRLYYPEIQTKESKNNLSKNDKLFVEKIK 878 + + T K+ + DKL +E+I+ Sbjct: 1061 RLECFTDLWTTHSVKDLHTWADKLEMEEIQ 1090 >gi|209876662|ref|XP_002139773.1| MutS domain-containing III family protein [Cryptosporidium muris RN66] gi|209555379|gb|EEA05424.1| MutS domain-containing III family protein [Cryptosporidium muris RN66] Length = 1210 Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 258/900 (28%), Positives = 438/900 (48%), Gaps = 117/900 (13%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP M+QY E+K + D LVF+++G FYELF+ DA L+ R + G P G Sbjct: 281 TPAMQQYWELKKDHFDKLVFFKIGKFYELFYIDACLSQRLCDLRWMS-----GDGKPHVG 335 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKS-------LVRRNVVRLVTPGT 138 P + Y KL+ G+R+ + EQ+E+P E ++R + V+R V T GT Sbjct: 336 FPEAALHAYANKLVNYGYRVVVVEQMETPKELEERNKTTSGIKKDKAVKRGVNEFFTNGT 395 Query: 139 LTEDQLLSPTDSNYLMAVA-----------RIRTEWAIAWIDISTGIFKIST----SNHD 183 L +L+ + LM + I E I +DI+TG ++S +H Sbjct: 396 LVRPNMLNDM-ARILMTIYVFSKVNDEAPDNIINEIGIVCVDITTGKSELSILKEIGDHF 454 Query: 184 RLISDIM-RIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYY- 241 ++ ++ ++ PRE+++ L + L T + + F + ++ I +++ Sbjct: 455 PMVKTLVTQVQPREVVYLSGNLPLPILRYLKNTTPTIQLTSFRDFMEPILASKDIIEHFQ 514 Query: 242 --NI---TTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPERE---DIQSTLFID 293 N+ T ++ + S TA + ++Y+K + ++ + ++ D + L +D Sbjct: 515 RVNVEIPTIINELCTKSTALCTALSGTLNYLKSILLCDRFILTGNFQQYNPDEKQYLLLD 574 Query: 294 SAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINF 353 + A +LE+L+T G + SL + ++ T G RL + ++ PLT++ +IN RLD + + Sbjct: 575 AGALKDLELLQTQQGDEKNSLFGFLKHTSTPGGTRLLRKWLSHPLTNADRINERLDCVEW 634 Query: 354 FIQNP-ILINPIQKILKSSP----------DVPRSLSRLKIG-----RGEPKDIAVIRDG 397 FI +P +L N +++ SP D+ R ++R+ G RG + VI+ Sbjct: 635 FINHPNVLFNFCRELKAISPNGNGSPGSNLDLERIINRITTGALQNTRGAIFFVNVIQKK 694 Query: 398 IRSGINILNLFLKNDLPEELR---GAVEKLKKLPQSLEKT--LSSMLSDDLPTFKRDGGF 452 I +N L +F K + E +R G +E K +P L ++++ ++ T GGF Sbjct: 695 IVDFLNSLEIFEK--VLECIRSNFGDIELRKTMPTLLLALTGVNNLQCEEKATEPYLGGF 752 Query: 453 LRD-GADASLDETRSLRDQSKRIIAS--------LQLKYAEETK------IKNLKIKHNN 497 L + + + ++D + I + L L ETK ++ + K NN Sbjct: 753 LPEISGIVEILRSWFVKDINNEWIPASGNYDLYDLNLSLINETKDKLNSELELISSKLNN 812 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNL---------TRFTTLELIDL----E 544 F+ + + ++E D I R + L RF T ++ DL E Sbjct: 813 TTIKFVHMK------YRYEVECPDN-IPRSKLPKLEITSSKKGFIRFHTDKIKDLIYELE 865 Query: 545 NRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN---Y 601 R NS E+ ++ + S D+ SQ +D+ IAL+I++ + + Sbjct: 866 YREEQLQNSLFPYIQEACKMFHSHFSSFSAISDSLSQ----LDVLIALSIVSMDTTDGPF 921 Query: 602 CRPII---DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGP 658 CRP + + RHP+V + + F+ ND + + S L+TGP Sbjct: 922 CRPTFLEDSGKSTLELTKCRHPVVARL-----NSGFVDNDIFFNTRDVHAS--CILVTGP 974 Query: 659 NMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMI 718 NMGGKST LRQ + VIMA +G +VPAS + +VD++F+R+G+ D++ +STF+VE+ Sbjct: 975 NMGGKSTVLRQTCIAVIMAHIGCFVPASKCSLTLVDRIFTRIGAYDSILEAKSTFLVELE 1034 Query: 719 ETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELT-D 777 ETA+IL AT S V++DE+GRGT+T DG +I AT+EY+ +CR L +TH H L + Sbjct: 1035 ETATILKHATRNSLVVVDELGRGTSTFDGTAICVATLEYISHHIQCRCLFSTHLHLLCQE 1094 Query: 778 LSK--SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI 835 S+ S+ FH L++S + I FL+K + GI SYG+ V +LAG+P VI +A ++ Sbjct: 1095 FSEDPSIIAFH-MDLKLSQDTKTITFLYKFVRGICPKSYGMNVAQLAGIPAEVIDKAVNL 1153 >gi|387849|gb|AAB60711.1| MutS homologue; major mRNA product contains exon 1a and exon 9b; alternative protein produced from exon 1b and exon 9b [Mus musculus] Length = 1091 Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 259/933 (27%), Positives = 455/933 (48%), Gaps = 114/933 (12%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ QY+++K + D+++ G Y F +DA +A+R L I HL + Sbjct: 188 TPLELQYLDMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYC-----HLDHNFMTAS 242 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESP-LEAKKRGNKSLVRRNVVRLVTPGTLTE--- 141 +P H ++++L+ G+++ + +Q E+ L+A S+ R + L T TL Sbjct: 243 IPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNKSSVFSRKLTALYTKSTLIGEDV 302 Query: 142 ------------DQLLSPTDSNYLMAVARIRT----------EWAIAWIDISTG--IFKI 177 D++++ T +NYL+ + + + + +TG +F Sbjct: 303 NPLIRLDDSVNIDEVMTDTSTNYLLCIYEEKENIKDKKKGNLSVGVVGVQPATGEVVFDC 362 Query: 178 STSNHDRLI--SDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQP--------NVF 227 + RL + I + P E++ +LS + L + NV+V N + Sbjct: 363 FQDSASRLELETRISSLQPVELLLP-SDLSEPT-EMLIQRATNVSVRDDRIRVERMNNTY 420 Query: 228 FDHSISESRIADYYNITTVDTFGSFS-----QVEK---TAAAAAISYIKK---TQMVNKP 276 F++S + + ++Y VD+ GS S +EK A AA I Y+K+ +M++KP Sbjct: 421 FEYSHAFQTVTEFYAREIVDSQGSQSLSGVINLEKPVICALAAVIRYLKEFNLEKMLSKP 480 Query: 277 TIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSITGAGGRLFAERIA 335 + + + I+ NLEIL+ + + + SLL +D++ T G R + Sbjct: 481 E-SFKQLSSGMEFMRINGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKLKNWVT 539 Query: 336 SPLTDSTKINTRLDSINFFIQN-PILINPIQKILKSSPDVPRSLSRL---KIGRGE---- 387 PL +IN RLD+++ + + + I+ +L+ PDV R L + K E Sbjct: 540 QPLLKLREINARLDAVSDVLHSESSVFEQIENLLRKLPDVERGLCSIYHKKCSTQEFFLI 599 Query: 388 PKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL---SSMLSDDLP 444 K + ++ +++ + +N +++DL LR + +L + K L ++ + D Sbjct: 600 VKSLCQLKSELQALMPAVNSHVQSDL---LRALIVELLSPVEHYLKVLNGPAAKVGDKTE 656 Query: 445 TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGY 501 FK D +D L + R +++ + +I S+Q++ E KI +L+ + + Sbjct: 657 LFK-------DLSDFPLIKKR--KNEIQEVIHSIQMRLQEFRKILKLPSLQYVTVSGQEF 707 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL-IELE 560 IE+ +S+ S + D ++ + ++RF +++ R+ +L E Sbjct: 708 MIEIKNSAVSCIPAD------WVKVGSTKAVSRFHPPFIVESYRRLNQLREQLVLDCNAE 761 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 L N E +L A +A +D +LA +AK+ NYCRP + I+K+GRHP Sbjct: 762 WLGFLEN-FGEHYHTLCKAVDHLATVDCIFSLAKVAKQGNYCRPTLQEEKKIIIKNGRHP 820 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +++ L +Q F+ N LS +S ++ ++TGPNMGGKS++++Q AL+ IMAQ+G Sbjct: 821 MIDVLLGEQDQ--FVPNSTSLS-----DSERVMIITGPNMGGKSSYIKQVALVTIMAQIG 873 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 SYVPA A IGIVD +F+R+G+ADN+ GRSTFM ++ +TA I+ +A+ QS VILDE+GR Sbjct: 874 SYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEQLTDTAEIIRRASPQSLVILDELGR 933 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS----LKRFHNATLQVSDSN 796 GT+T DG++IA+AT+EY + L TH+ + +L K + +H L D + Sbjct: 934 GTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKCYPEQVGNYHMGFLVNEDES 993 Query: 797 -----------EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH 845 + + FL+++ GIA SYG+ V KLA +P V+ +A K E L Sbjct: 994 KQDSGDMEQMPDSVTFLYQITRGIAARSYGLNVAKLADVPREVLQKAAHKSKELEGLVSL 1053 Query: 846 NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIK 878 +K + + T K+ + DKL +E+I+ Sbjct: 1054 RRKRLECFTDLWMTHSVKDLHTWADKLEMEEIQ 1086 >gi|257487047|ref|ZP_05641088.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 432 Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 173/453 (38%), Positives = 265/453 (58%), Gaps = 31/453 (6%) Query: 453 LRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASV 512 ++ G DA LD+ +SL + + + + L+ + T + NLK+ +N GYFIE+ S A Sbjct: 1 MKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLANLKVGYNRVHGYFIELPSKQAEQ 60 Query: 513 LKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQ 572 D +I RQT+ RF T EL + E++ +A + AL E +E L +I Sbjct: 61 APAD------YIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKMLYEALLEDLIGH 114 Query: 573 SESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSK 632 L + + +A +D+ LA A + P ++ GRHP+VE+ L S Sbjct: 115 LAPLQDTAAALAELDVLSNLAERALNLDLNCPRFVAEPCMRIEQGRHPVVEQVL----ST 170 Query: 633 PFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGI 692 PF+AND L +S ++ ++TGPNMGGKST++RQ ALIV++A +GS+VPA+ + + Sbjct: 171 PFVANDLALD-----DSTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCELSL 225 Query: 693 VDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAW 752 VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V++DE+GRGT+T DGLS+AW Sbjct: 226 VDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFDGLSLAW 285 Query: 753 ATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADH 812 A E L + R L ATH+ ELT L +S N L ++ NE I+FLH+V+PG A Sbjct: 286 AAAECLAQL-RAYTLFATHYFELTVLPESEPLVSNVHLNATEHNERIVFLHRVLPGPASQ 344 Query: 813 SYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKL 872 SYG+ V +LAG+P VISRA + L+ E L + + + K K + + + Sbjct: 345 SYGLAVAQLAGVPGKVISRAKEHLQRLET--------TSLPHEQPRAKPGKPAVPQQSDM 396 Query: 873 F-------VEKIKCLNLDEMSPLTALKTLYAVK 898 F ++++ + +D+M+P AL LY ++ Sbjct: 397 FASLPHPVLDELSKVKVDDMTPRQALDLLYTLQ 429 >gi|167586784|ref|ZP_02379172.1| DNA mismatch repair protein [Burkholderia ubonensis Bu] Length = 491 Score = 303 bits (776), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 178/477 (37%), Positives = 259/477 (54%), Gaps = 21/477 (4%) Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 P L++ ++ + RDGG + G DA LDE R + + + + L+ + T Sbjct: 20 PAECLGLLTNAIAPEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLEARERARTG 79 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 I NL++++N G++IEVT + D + RQT+ N R+ T EL E++ Sbjct: 80 IANLRVEYNKVHGFYIEVTRGQTDKVPDD------YRRRQTLKNAERYITPELKTFEDKA 133 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 +A AL E ++ + A++ + +A +D+ A A A+ ++ P Sbjct: 134 LSAQERALARERALYDAVLQALLPFIPECQRVASALAELDLLAAFAERARALDWVAPTFT 193 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 + ++ GRHP+VE ++Q FIANDC L KL L+TGPNMGGKSTF+ Sbjct: 194 DEIGIDIEQGRHPVVEAQVEQ-----FIANDCKLG-----TERKLLLITGPNMGGKSTFM 243 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ ALI +MA +GSYVPA A G +D++F+R+G+AD+LA GRSTFMVEM E A+ILN A Sbjct: 244 RQTALIALMAYVGSYVPAKSACFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILNDA 303 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 T QS V++DEIGRGT+T DGL++AWA +L N C L ATH+ ELT L N Sbjct: 304 TPQSLVLMDEIGRGTSTFDGLALAWAIARHLLAHNGCYTLFATHYFELTQLPAEFPHAAN 363 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK---LYH 844 L + GI+FLH V G A+ SYG+QV +LAG+P VI A L E+ H Sbjct: 364 VHLSAVEHGHGIVFLHAVNEGPANQSYGLQVAQLAGVPAPVIRAARKHLAYLEQQSAAQH 423 Query: 845 HNQKDMRLYYPEIQTKESKNNLSKNDKLF--VEKIKCLNLDEMSPLTALKTLYAVKA 899 Q D+ P E + + +EK++ ++ D++ P AL LY ++A Sbjct: 424 TPQLDLFSMQPAADDLECADAPATPSAPHPALEKLRDIDPDDLKPREALDLLYELRA 480 >gi|73952330|ref|XP_536307.2| PREDICTED: similar to DNA mismatch repair protein Msh3 (Divergent upstream protein) (DUP) (Mismatch repair protein 1) (MRP1) [Canis familiaris] Length = 1124 Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 255/934 (27%), Positives = 456/934 (48%), Gaps = 115/934 (12%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ QYIE+K D+++ G Y F +DA +A+R L I HL + Sbjct: 219 TPLELQYIELKQQQKDAILCVECGYKYRFFGEDAEIAARELNIYC-----HLDHNFMTAS 273 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESP-LEAKKRGNKSLVRRNVVRLVTPGTLTE--- 141 +P H ++++L+ G+++ + +Q E+ L+A SL R + L T TL Sbjct: 274 IPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAVGDNKSSLFSRKLTALYTKSTLIGEDV 333 Query: 142 ------------DQLLSPTDSNYLMAVARIRTEW----------AIAWIDISTG-----I 174 D++++ T +++L+ + I + TG Sbjct: 334 NPLVKLDDAINVDEVMTDTSTSFLLCICENEENVKDKKKGNIFIGIVGVQPVTGEVVFDS 393 Query: 175 FKISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQP---------- 224 F+ S S + L + I+ + P E++ + LS ETL + A A Sbjct: 394 FQDSASRSE-LETRILCLQPVEMLLPSR-LSEQT-----ETLVHRATAASVRDDRIRVER 446 Query: 225 --NVFFDHSISESRIADYYNITTVD-----TFGSFSQVEK---TAAAAAISYIKK---TQ 271 NV+F++S + + ++Y VD +F +EK + AA I Y+K+ + Sbjct: 447 MDNVYFEYSHAFQAVTEFYAKDAVDIQASQSFSGIINLEKPVICSLAAVIRYLKEFNLEK 506 Query: 272 MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSITGAGGRLF 330 +++KP + + + I+ NLEIL+ + + + SLL +D++ T G R Sbjct: 507 VLSKPK-NFKQFSGEMEFMTINGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKL 565 Query: 331 AERIASPLTDSTKINTRLDSINFFIQN-PILINPIQKILKSSPDVPRSLSRLKIGRGEPK 389 + + PL +IN RLD+++ + + + I+ L+ PD+ R L + + + Sbjct: 566 KKWVVQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIERGLCSIYHKKCSTQ 625 Query: 390 DIAVI-------RDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 + +I + ++ I +N +++DL LR + ++ +L +E L +L++ Sbjct: 626 EFFLIVKTLYHLKSEFQALIPAVNSHVQSDL---LRTFILEIPELLSPVEHYLR-ILNEQ 681 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI-KNLKIKHNNNLG- 500 +D D L + R +D+ + + +Q+ E KI KN +++ G Sbjct: 682 AAKIGDKTELFKDLTDFPLIKKR--KDEIQEVTDKIQMHLQEIRKILKNPSLQYVTVSGQ 739 Query: 501 -YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 + IE+ +S+ S + D ++ + ++RF + +++ R N L+++ Sbjct: 740 EFMIEIKNSAVSCIPTD------WVKVGSTKAVSRFHSPFIVE-NYRHLNQLREQLVLDC 792 Query: 560 --ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + L N SL A +A +D +LA +AK+ +YCRP + ++K+G Sbjct: 793 SAEWLDFLEN-FSAHYHSLCKAVHHLATVDCIFSLAKVAKQGDYCRPSLQEERKIVIKNG 851 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+++ L +Q ++ N +LS +S ++ ++TGPNMGGKS++++Q ALI IMA Sbjct: 852 RHPVIDVLLGEQDQ--YVPNSTNLS----GDSERVMIITGPNMGGKSSYIKQVALITIMA 905 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+GSYVPA A IGIVD +F+R+G+ADN+ G+STFM E+++TA I+ QAT+QS VILDE Sbjct: 906 QIGSYVPAEEATIGIVDGIFTRMGAADNIYKGQSTFMEELMDTAEIIRQATSQSLVILDE 965 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS----LKRFHNATLQVS 793 +GRGT+T DG++IA+AT+E+ + L TH+ + +L KS + +H L Sbjct: 966 LGRGTSTHDGIAIAYATLEHFIRDVKSLTLFVTHYPPVCELEKSYLQEVGNYHMGFLVNE 1025 Query: 794 DSNEG----------IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY 843 D N+ + FL+++ GIA SYG+ V KLA +P ++ +A K E L Sbjct: 1026 DENKEDPGEEPVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAASKSKELEGLV 1085 Query: 844 HHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKI 877 + +K ++ + + K+ D+ +E+I Sbjct: 1086 NMKRKRLKCFTKLWMISDGKDLQKWTDEFEMEEI 1119 >gi|126321607|ref|XP_001369923.1| PREDICTED: similar to novel radial spoke domain containing protein [Monodelphis domestica] Length = 1236 Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 252/914 (27%), Positives = 449/914 (49%), Gaps = 122/914 (13%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ QY+E+K + D+++ G Y F +DA +A+R L I HL + Sbjct: 301 TPLELQYLEMKEQHKDAILCIECGYKYRFFGEDAEIAARELNIYC-----HLDHNFMTAS 355 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLVTPGTLT-ED- 142 +P H ++++L+ GH++ + +Q E + L+A SL R + L T TL ED Sbjct: 356 IPTHRLFVHVRRLVAKGHKVGVVKQTETAALKALGENKSSLFTRKLTALYTKSTLIGEDV 415 Query: 143 -------------QLLSPTDSNYLMAVARIRTEW----------AIAWIDISTG-----I 174 ++ S T +NYL+ + + I + +TG Sbjct: 416 NPLIKLDDPVNVEEIASDTSNNYLLCICENKENLKDKQKRNVTIGIVGVQPATGEVVFDS 475 Query: 175 FKISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA--------QPNV 226 F+ S S + L + I+++ P E++ + H E +++ +V+V N+ Sbjct: 476 FQDSISRSE-LETRILKLQPVELLLPSEMSDHTE--KFIKSVTSVSVRDDRIRIERMDNL 532 Query: 227 FFDHSISESRIADYY----NITTVDTFGSFSQVEK---TAAAAAISYIKK---TQMVNKP 276 +F++S + I ++Y ++ +F ++K ++ AA I Y+K+ +M+ P Sbjct: 533 YFEYSHAFQLITEFYAEVLDVKASQSFSGILNLDKLVISSLAAIIRYLKEFNLEKMLYNP 592 Query: 277 TIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR-EQSLLKTIDYSITGAGGRLFAERIA 335 + + + I+ A NLEIL+ S+ SLL +D++ T G R + + Sbjct: 593 R-NFKKFSSEMEFMTINGTALKNLEILQNQVDSKFRGSLLWVLDHTKTPFGRRKLKKWVT 651 Query: 336 SPLTDSTKINTRLDSIN-FFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVI 394 PL S +IN RLD+++ + ++ IQ L PD+ R L + + ++ +I Sbjct: 652 QPLLKSKEINARLDAVSEVLLSESSVLAHIQNHLCKLPDLERGLCSIYHKKCSTQEFFII 711 Query: 395 RDG-------IRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT--LSSMLSDDLPT 445 I++ I +N +K+DL ++ L ++P+ L+ ++LS+ Sbjct: 712 VKALCHLKIEIQALIPAINSQVKSDLLKKF------LLEIPELLDPVEHYFNILSEQAAK 765 Query: 446 FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI-KNLKIKHNNNLG--YF 502 +D +D TR +++ + + A + L E ++ KN + + LG + Sbjct: 766 IGDKTELFKDLSDFPSISTR--KEEIQMVTAKVNLHLQEIRRLLKNPSVHYKTVLGQEFL 823 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID-------LENRITNATNSAL 555 IEV +S S + D ++ + ++RF + +++ L ++ N+ Sbjct: 824 IEVKNSLTSSIPSD------WVKIGSTKAVSRFHSPFIVENYRHLNQLREQLVLDCNTEW 877 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 L L+ F E SL A +A ID +LA +AK+ +YCRP++ ++K Sbjct: 878 LNFLDHFS-------EHYHSLCKAVHHLATIDCIFSLAKVAKQGDYCRPVLQEERKIVIK 930 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 +GRHP+++ L +Q ++ N LS +S ++ ++TGPNMGGKS++++Q ALI I Sbjct: 931 NGRHPVIDMLLGEQDQ--YVPNSTYLS----GDSERVMIITGPNMGGKSSYIKQVALITI 984 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+GSYVPA A IGIVD +F+R+G+ADN+ G+STFM E+ +TA I+ +AT+QS VIL Sbjct: 985 MAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGQSTFMEELADTAEIIRKATSQSLVIL 1044 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRF---------- 785 DE+GRGT+T DG++IA+AT+E+ + L TH+ + +L K R+ Sbjct: 1045 DELGRGTSTHDGIAIAYATLEHFIRDVQSLTLFVTHYPPVCELEKIYSRWVGNYHMGFLV 1104 Query: 786 --HNATLQVSDSNEGI----IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF 839 +T + +E I FL+++ G+A SYG+ V KLA +P ++ +A K Sbjct: 1105 NEEESTQEPGQEDEEIPDFVTFLYQITRGVASRSYGLNVAKLADVPGEILKKAAYKSKEL 1164 Query: 840 EKLYHHNQKDMRLY 853 E+L + +K ++ + Sbjct: 1165 ERLVNVKRKRLKSF 1178 >gi|400971|sp|P13705|MSH3_MOUSE RecName: Full=DNA mismatch repair protein Msh3; AltName: Full=Protein repair-1; Short=REP-1; AltName: Full=Protein repair-3; Short=REP-3 gi|200706|gb|AAA40052.1| Citations 2 and 3 contain revisions to the original sequence in Citation 1. The name of the gene was changed after Citation 1 from Rep-1 to Rep-3 to avoid naming conflict with an unrelated gene.; complete cds of major mRNA [Mus musculus] Length = 1091 Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 256/933 (27%), Positives = 454/933 (48%), Gaps = 114/933 (12%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ QY+++K + D+++ G Y F +DA +A+R L I HL + Sbjct: 188 TPLELQYLDMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYC-----HLDHNFMTAS 242 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESP-LEAKKRGNKSLVRRNVVRLVTPGTLTE--- 141 +P H ++++L+ G+++ + +Q E+ L+A S+ R + L T TL Sbjct: 243 IPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNKSSVFSRKLTALYTKSTLIGEDV 302 Query: 142 ------------DQLLSPTDSNYLMAVARIRT----------EWAIAWIDISTG--IFKI 177 D++++ T +NYL+ + + + + +TG +F Sbjct: 303 NPLIRLDDSVNIDEVMTDTSTNYLLCIYEEKENIKDKKKGNLSVGVVGVQPATGEVVFDC 362 Query: 178 STSNHDRLI--SDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQP--------NVF 227 + RL + I + P E++ +LS + L + NV+V N + Sbjct: 363 FQDSASRLELETRISSLQPVELLLP-SDLSEPT-EMLIQRATNVSVRDDRIRVERMNNTY 420 Query: 228 FDHSISESRIADYYNITTVDTFGSFS-----QVEK---TAAAAAISYIKK---TQMVNKP 276 F++S + + ++Y VD+ GS S +EK A AA I Y+K+ +M++KP Sbjct: 421 FEYSHAFQTVTEFYAREIVDSQGSQSLSGVINLEKPVICALAAVIRYLKEFNLEKMLSKP 480 Query: 277 TIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSITGAGGRLFAERIA 335 + + + I+ NLE+++ + + + SLL +D++ T G R + Sbjct: 481 E-SFKQLSSGMEFMRINGTTLRNLEMVQNQTDMKTKGSLLWVLDHTKTSFGRRKLKNWVT 539 Query: 336 SPLTDSTKINTRLDSINFFIQN-PILINPIQKILKSSPDVPRSLSRL---KIGRGE---- 387 PL +IN RLD+++ + + + I+ +L+ PDV R L + K E Sbjct: 540 QPLLKLREINARLDAVSDVLHSESSVFEQIENLLRKLPDVERGLCSIYHKKCSTQEFFLI 599 Query: 388 PKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL---SSMLSDDLP 444 K + ++ +++ + +N +++DL LR + +L + K L ++ + D Sbjct: 600 VKSLCQLKSELQALMPAVNSHVQSDL---LRALIVELLSPVEHYLKVLNGPAAKVGDKTE 656 Query: 445 TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGY 501 FK D +D L + R +++ + +I S+Q++ E KI +L+ + + Sbjct: 657 LFK-------DLSDFPLIKKR--KNEIQEVIHSIQMRLQEFRKILKLPSLQYVTVSGQEF 707 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL-IELE 560 IE+ +S+ S + D ++ + ++RF +++ R+ +L E Sbjct: 708 MIEIKNSAVSCIPAD------WVKVGSTKAVSRFHPPFIVESYRRLNQLREQLVLDCNAE 761 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 L N E +L A +A +D +LA +AK+ NYCRP + I+K+GRHP Sbjct: 762 WLGFLEN-FGEHYHTLCKAVDHLATVDCIFSLAKVAKQGNYCRPTLQEEKKIIIKNGRHP 820 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +++ L +Q F+ N LS +S ++ ++TGPNMGGKS++++Q L+ IMAQ+G Sbjct: 821 MIDVLLGEQDQ--FVPNSTSLS-----DSERVMIITGPNMGGKSSYIKQVTLVTIMAQIG 873 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 SYVPA A IGIVD +F+R+G+ADN+ GRSTFM ++ +TA I+ +A+ QS VILDE+GR Sbjct: 874 SYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEQLTDTAEIIRRASPQSLVILDELGR 933 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS----LKRFHNATLQVSDSN 796 GT+T DG++IA+AT+EY + L TH+ + +L K + +H L D + Sbjct: 934 GTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKCYPEQVGNYHMGFLVNEDES 993 Query: 797 -----------EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH 845 + + FL+++ GIA SYG+ V KLA +P V+ +A K E L Sbjct: 994 KQDSGDMEQMPDSVTFLYQITRGIAARSYGLNVAKLADVPREVLQKAAHKSKELEGLVSL 1053 Query: 846 NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIK 878 +K + + T K+ + DKL +E+I+ Sbjct: 1054 RRKRLECFTDLWMTHSVKDLHTWADKLEMEEIQ 1086 >gi|213406337|ref|XP_002173940.1| DNA mismatch repair protein msh6 [Schizosaccharomyces japonicus yFS275] gi|212001987|gb|EEB07647.1| DNA mismatch repair protein msh6 [Schizosaccharomyces japonicus yFS275] Length = 1178 Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 242/861 (28%), Positives = 416/861 (48%), Gaps = 83/861 (9%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S P +QY EIK D++VF++ G FYEL+ +DA + + + LT R ++ M Sbjct: 296 SFKPFEKQYWEIKKNLMDTVVFFQKGKFYELYENDAAIGHQVFALKLTDR-----VNMKM 350 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPL--EAKKRGN----KSLVRRNVVRLVTPG 137 G+P T ++ + I G+RIA +Q+E+ L E K R N + +V+R + +++T G Sbjct: 351 VGIPEATFEYWAAQFIAKGYRIARVDQLETALGKEMKDRKNSKREEKVVQRGLTQVLTSG 410 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWA--------IAWIDISTGIFKISTSNHD----RL 185 TL ++ +L+ S Y MA+ + + ++D +TGI + D +L Sbjct: 411 TLVDESMLTSDMSTYCMALKEAPNPQSRADGPLLGVCFVDTATGIVRACEFQDDISRTKL 470 Query: 186 ISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVA----VAQPNVFFDH--SISESRIAD 239 + + +I PRE++ + +S +++ L + + N F+D ++ E D Sbjct: 471 DTLLTQIRPRELLLEKSGISQKTMRTIKNGLSASSTIHNIKPYNEFWDQERTVREFDSCD 530 Query: 240 YYN-----ITTVDTFGSFSQVEKTAAAAAISYIKKTQM----VNKPTIGYPEREDIQSTL 290 +++ + + + +A A + Y+++ ++ + + ++L Sbjct: 531 FFDEHKEMPDALRNVLDKNPLAASAVGALVWYLRQLKLDKDIFSMGNFHIYDASQQSTSL 590 Query: 291 FIDSAARSNLEILR-TLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLD 349 ++ NLEI + G E +L + + +T G RLF + PL +IN RLD Sbjct: 591 LLNGQTLKNLEIFNNSFDGGEEGTLFRLMCRCVTPFGKRLFHSWMNHPLRSPEQINGRLD 650 Query: 350 SINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG---IRSGINILN 406 + + NP L + I IL PD+ R +SR+ R +P D I +G I +GI+ L Sbjct: 651 VVELLLDNPNLRDAILGILHKLPDLERMISRVHASRCKPIDFLRILEGFKRIDTGIHEL- 709 Query: 407 LFLKNDLPEELRG-AVEKL-KKLPQ------SLEKTLSSMLSDDLPTFKRDGGFLRDGAD 458 K D ++G A+E++ +++P S + S + D F + GF + Sbjct: 710 ---KEDFGTLMKGTALERIVERMPDMASELDSWSRAFSWSRARDEGVFVPEPGF-----E 761 Query: 459 ASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLE 518 DE+++ ++ + L +Y +E K +L K Y +EV D++ Sbjct: 762 PEYDESKTHQNALIDDLHELLNRYKKELKCSSLTFKDIGKEVYQVEVPV--------DVK 813 Query: 519 SKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDN 578 + R+ T EL ++ + + IE + E+ Sbjct: 814 VPVSWCKMSGTKKFNRYYTDELRKKIKKLLESQETHFAIEARMQDKFYARFDEKYSDWVR 873 Query: 579 ASQVIAIIDI--SIALAILAKEQNYCRP-IIDNSTNFIV-KDGRHPIVEKTLKQQSSKPF 634 + +A +D S+ALA A + CRP I+D + + ++ RHP V TL ++ F Sbjct: 874 MIKAVASMDCLYSLALASAALGEPCCRPEILDQEQSEVTFEELRHPCV-STL---TAGTF 929 Query: 635 IANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVD 694 + ND L S + +LTGPNM GKST LRQ L VIMAQ+G YVPA +A + +D Sbjct: 930 VPNDVQLG----GMSANMIVLTGPNMAGKSTLLRQTCLAVIMAQLGCYVPAKHARLTPMD 985 Query: 695 KLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWAT 754 + +R+G+ D++ S RSTFMVE+ ET IL+++T ++ VILDE+GRGT+T DG +IA+A Sbjct: 986 SIHTRLGANDDIMSSRSTFMVELSETKKILDESTPRTLVILDELGRGTSTYDGQAIAYAV 1045 Query: 755 IEYLHETNRCRGLLATHFHEL-TDL--SKSLKRFHNATLQVSDSNEGIIFLHKVIPGIAD 811 + +L C G +TH+ L TD K L+ + L V ++ + FL+K++ G+ Sbjct: 1046 LHHLVSNIGCLGFFSTHYQSLCTDFVHHKQLRMMQMSAL-VDEAGRRVTFLYKLVDGVCS 1104 Query: 812 HSYGIQVGKLAGLPNTVISRA 832 SYG+ V +A +P V+ A Sbjct: 1105 KSYGMNVASMASVPEEVVQVA 1125 >gi|218678736|ref|ZP_03526633.1| DNA mismatch repair protein [Rhizobium etli CIAT 894] Length = 228 Score = 301 bits (770), Expect = 5e-79, Method: Composition-based stats. Identities = 141/228 (61%), Positives = 189/228 (82%) Query: 527 QTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAII 586 QTM++ RFTT EL DLE+RI NA + AL IEL +F+ ++ A++ ++E++ + ++ +A+I Sbjct: 1 QTMASAMRFTTTELADLESRIANAADRALTIELAAFDRMTAAVVAEAEAIKSGARALAVI 60 Query: 587 DISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPND 646 D++ +LA+LA+EQ YCRP +D S F ++ GRHP+VE+ L++Q+ PF+AN+CDLS Sbjct: 61 DVAASLALLAEEQAYCRPQVDGSKMFAIEGGRHPVVEQALRRQAGGPFVANNCDLSPKTG 120 Query: 647 KNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNL 706 G +WLLTGPNMGGKSTFLRQNALI I+AQMGS+VPA+ AHIGIVD+LFSRVG++D+L Sbjct: 121 DKDGAIWLLTGPNMGGKSTFLRQNALIAILAQMGSFVPAASAHIGIVDRLFSRVGASDDL 180 Query: 707 ASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWAT 754 A GRSTFMVEM+ETA+ILNQA+++S VILDEIGRGTAT DGLSIAWA+ Sbjct: 181 ARGRSTFMVEMVETAAILNQASDRSLVILDEIGRGTATFDGLSIAWAS 228 >gi|221057249|ref|XP_002259762.1| DNA repair protein [Plasmodium knowlesi strain H] gi|193809834|emb|CAQ40538.1| DNA repair protein, putative [Plasmodium knowlesi strain H] Length = 1303 Score = 300 bits (769), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 254/965 (26%), Positives = 448/965 (46%), Gaps = 179/965 (18%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP M+Q+ +IKS N D ++F++MG FYE+F+ DA L G+ G+ P G Sbjct: 331 TPGMQQFWKIKSKNFDKIIFFKMGRFYEIFYIDACLMHTICGLNWMG-----GEQKPHLG 385 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSL------VRRNVVRLVTPGTL 139 P + + Y +K+I GH++ + EQ+E+P E ++R ++ ++R + + T GT+ Sbjct: 386 FPEQSLHLYAKKVINSGHKVVVIEQMETPKELEQRNKETCGPKDKAIKREINEIYTKGTI 445 Query: 140 TEDQLLSPTDSNYLMAVA-------------------------------RIRTEWAIAWI 168 D +LS +++ YL+ IR++ ++ Sbjct: 446 LHDNMLS-SETRYLICFHFDDVEDLDDGVVGICNGGVGSLPGSSSQSERSIRSKCNFGFV 504 Query: 169 --DISTGIFKISTSNHD----RLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA 222 DI+T + N D L + + ++ P EI+++ K + + E S+F+ + A Sbjct: 505 VSDIATSYIAVGYCNDDESRIELRTILAQLCPAEILYASKNI-NKEVLSIFKNIP----A 559 Query: 223 QPNV-----FFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPT 277 +P + F + S I Y+ Q A ++ +++K Sbjct: 560 EPELTGVSSFPNIIASLDEIRKYFETIPPSLEMHKEQNSVICAFGGFIVYLRSLLLDKKI 619 Query: 278 IGYPEREDI-----QSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAE 332 + + E ++ + +D+ A +LEIL T SG + SL ++ + T G R Sbjct: 620 FRFCKIEHYDLFKRENYMVLDATALKHLEILETQSGETKNSLFDYVNKTCTNFGARNMRR 679 Query: 333 RIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIA 392 I SPL D TKIN RLD ++F +N +++ I+ LK PD+ R L+++ I + + A Sbjct: 680 WICSPLLDCTKINERLDVVDFLKKNEHILSLIRLKLKKLPDIERLLNKICIQASQSERGA 739 Query: 393 VIRDGI-----RSGINILNLFLK-NDLPEELRGAVEKLKKLPQSL--------EKTLSSM 438 V D I + + LN F + + E+ + ++LP+ L ++L Sbjct: 740 VFFDNIVNTKLKEFMTFLNAFKEIGSMLIEINSIEKDEEELPKRLFEISNTPDRRSLVKN 799 Query: 439 LSDDLPTFKR-DGGFLR-------------DGADASLDE----TRSLRDQSKRIIASLQL 480 + + P ++ FL+ +G D ++D+ R + + I+ S++ Sbjct: 800 IQGNYPHIEQITTEFLKKIEFDGDKEYKPAEGCDEAIDQINKKEREVEIELNNILTSMKK 859 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLE---SKDRFIHRQTMSNLTRFTT 537 K KI +LK H Y +E + V KD+E +K FI RF Sbjct: 860 K----MKISSLKYVH-AKYKYEVECPENVPKVFLKDVEITSAKKGFI---------RFQN 905 Query: 538 LEL---IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAI 594 E+ +++ I A+ F+ + + E +A ++++ +D A A Sbjct: 906 DEIKQCVEMLEDIVQEKKDAI---YPFFKKIFHLFYAHYEKYVSACRLVSELDCLQAFAF 962 Query: 595 LAKEQNYC--RPIID------NSTNFIVKDGRH--------------------------- 619 +A ++ RPI+ N + ++DG Sbjct: 963 VALNTSFVLTRPILHPMRPNVNVEDGSIEDGNDEDGNVENGNDENGNDDTGEINQRNKST 1022 Query: 620 -PIVEKTLKQQSSKPF------------------IANDCDLSCPNDKNSGKLWLLTGPNM 660 ++ ++ ++PF I+N+ + C + S LLTGPNM Sbjct: 1023 VSVMGRSADSHGNEPFLILENNIHPVVATLMPNFISNNIYMGCKQENQS--TLLLTGPNM 1080 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GGKST LRQ A+ VI+AQ+G++VP++Y + +VDK+F+R+GS+DNL G+STF+VE+ + Sbjct: 1081 GGKSTLLRQTAISVILAQIGAFVPSTYCELTVVDKIFTRLGSSDNLFEGKSTFLVELEDI 1140 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 +++L Q+T S ILDE+GRGT++ DG +IA +T+E + + +CR + +TH+H L + K Sbjct: 1141 SNMLKQSTKYSLAILDELGRGTSSFDGTAIALSTLEQISDVVKCRCIFSTHYHLLVEEVK 1200 Query: 781 ---SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILK 837 ++ +H +L + D E IIFL+K I G+ S+GI + KLAGLP +I A++ Sbjct: 1201 HNNNISNYH-MSLSIDDQQEKIIFLYKFIKGVCPKSFGIHIAKLAGLPKEIIDLAHEKST 1259 Query: 838 TFEKL 842 FE + Sbjct: 1260 LFENV 1264 >gi|321469768|gb|EFX80747.1| putative MSH6, mismatch repair ATPase [Daphnia pulex] Length = 1310 Score = 300 bits (768), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 279/937 (29%), Positives = 449/937 (47%), Gaps = 147/937 (15%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 +S TP MRQ+ E+K+ N D ++F+++G FYEL+ DAL+A + LGI L K G H Sbjct: 370 QSLTPAMRQWWEMKTNNFDVILFFKVGKFYELYHTDALIAVKELGIILMK-GDHA----- 423 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESP---LEAKKRGNKS-----LVRRNVVRLV 134 CG P Y +LI+ G+++A EQ E+P E KR ++ +V R V ++ Sbjct: 424 HCGFPERGFAKYSSQLIEKGYKVARVEQTETPEMMTERCKRMSRPTKFDRVVEREVCQIT 483 Query: 135 TPGTLTEDQLLS---PTDSNYLMAV--------ARIRTEWAIAWIDISTGIFKISTSNHD 183 + GT T + + + ++LMA+ A + E+ +A++D S G F++ D Sbjct: 484 SRGTRTYNAIEGDNWQVEHHFLMALWEKSGSEAAGGKVEFGVAFVDTSIGSFQLGQFGDD 543 Query: 184 R----LISDIMRIDPREIIFSEKELSH--------AEYKSLFETLGNVAVAQPNVFFDHS 231 R L + + R +P EII +++ +S+ A +L E + + A S Sbjct: 544 RYRSRLSTLLTRYNPVEIISAKRGVSNDTTQVWNAACPNALHEMVSSNAECWDPAKTLRS 603 Query: 232 ISESRIADYYNITT-----------VDTFGSFSQVEKTAAAAAIS-------YIKKTQMV 273 ++ES DY+ + +D S K + AI Y+K+ ++ Sbjct: 604 LAES---DYFKVNGDLDWPEGIRPLLDDSSSLGLAAKEESELAIRALGALHWYLKECKLD 660 Query: 274 NKP------TIGYPEREDIQ------STLFIDSAARSNLEIL-RTLSGSREQSLLKTIDY 320 + I YP E+ Q S + +D NL++L + +G+ SLL+ ++ Sbjct: 661 QELLSRRSFQIYYPIDEESQENAIFGSHMVLDGMTLRNLDVLVNSSTGTTTGSLLERLNR 720 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 T G R+ + +PL I+ RLD++ + + N I + KILKS PD+ R +++ Sbjct: 721 CNTAFGQRMLRHWLCAPLCQQDAIDDRLDAVEYLLSNTAAIEEVGKILKSLPDLERLVNK 780 Query: 381 LKI------GRGEPKDIAVIRDG-IRSGINILNLFL-------KNDLPEELRGAVEKLKK 426 + + P A+ D I S I + L + E R K Sbjct: 781 IHSQGSSLKAKNHPDSRAIFFDAPIYSKKKITDFLLTLEGFRSAQKVEEYFREYTIISKL 840 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLR---DGADASLDETRSLR-------DQSKRIIA 476 L QS++ L+S + P + F R D A+ + T R DQ+ IA Sbjct: 841 LRQSVK--LASQ-GGEFPDMDEELEFFRLAFDHQQAAKEGTMVPRPGVDKQYDQALERIA 897 Query: 477 SLQL---KYAEETKIK---NLKIKHNNNLGYFIEVTSSSASVL--KKDLESKDRFIHRQT 528 +Q KY + K + + + +EV+ ++AS K +L+ + + R Sbjct: 898 EVQADAEKYLLDQKRHFGGKVSFVGTDKKRFQLEVSEAAASRANHKYELQGQRKGFKR-Y 956 Query: 529 MSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSES----LDNASQVIA 584 +N +R +++ E + NSAL + +S I EQ ++ + A + +A Sbjct: 957 YTNESRVLIQQMLAAEEQ----RNSAL-------KDISRRIFEQFDNHHLLWEKAIKCLA 1005 Query: 585 IIDISIALAILAKEQNYCRPII----DNSTNFI-VKDGRHPIVEKTLKQQSSKPFIANDC 639 ++D+ +AL A +Q CRP I N F+ + GRHP + Q ++ FI ND Sbjct: 1006 VLDVVLALTAFAADQKVCRPRIIPPGSNQRPFLRLIQGRHPAHSQ---QFANSEFIPNDV 1062 Query: 640 DLSCPNDKNSGK-------LWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGI 692 + + S L L+TGPNMGGKST +RQ L VI+AQMGS+VPA + Sbjct: 1063 TIGSGVVEQSDSQVDADHSLTLVTGPNMGGKSTLMRQVGLCVILAQMGSFVPAEEFELTP 1122 Query: 693 VDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAW 752 VD+LF+R+G+ D++ G STF VE+ ETA+IL AT S V+LDE+GRGTAT DG +IA+ Sbjct: 1123 VDRLFTRLGANDHILGGESTFFVELSETAAILKHATLHSLVLLDELGRGTATFDGTAIAY 1182 Query: 753 ATIEYLHETNRCRGLLATHFHELT-DLSK--SLKRFHNATLQVSD------SNEGIIFLH 803 + +++L +CR L +TH+H L DL+ ++ H A + +D S E IIFL+ Sbjct: 1183 SVVDHLAR-RQCRTLFSTHYHSLVHDLTSHPQVRLGHMACMVENDEEVDDPSQENIIFLY 1241 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + + G SYG +LAGL ++ISR + K E Sbjct: 1242 QFVDGACPKSYGFHAARLAGLERSIISRGFQQAKRME 1278 >gi|149727014|ref|XP_001503905.1| PREDICTED: similar to hMSH3 [Equus caballus] Length = 1128 Score = 300 bits (768), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 251/931 (26%), Positives = 453/931 (48%), Gaps = 108/931 (11%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ QYIE+K D+++ G Y F +DA +A+R L I HL + Sbjct: 222 TPLELQYIEMKQQQKDAILCVECGYKYRFFGEDAEIAARELNIYC-----HLDHNFMTAS 276 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLVTPGTL----- 139 +P H ++++L+ G+++ + +Q E + L+A SL R + L T TL Sbjct: 277 IPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNKSSLFSRKLTALYTKSTLIGEDV 336 Query: 140 ----------TEDQLLSPTDSNYLMAVARIRTEW----------AIAWIDISTG-----I 174 D++++ T ++YL+ + + + + +TG Sbjct: 337 NPLVKLDDAVNVDEIITDTSTSYLLCICENKENVKDKKKGNIFIGLVGVQPATGEVVFDS 396 Query: 175 FKISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAV--------AQPNV 226 F+ S S + L + I+ + P E++ E L V+V N+ Sbjct: 397 FQDSASRSE-LETRILSLQPVELLLPSTLSEQTEL--LIRRATAVSVRDDRIRVERMDNM 453 Query: 227 FFDHSISESRIADYYNITTVDTFGSFS-----QVEK---TAAAAAISYIKK---TQMVNK 275 +F++S + + ++Y VD GS S +EK + AA I Y+K ++++K Sbjct: 454 YFEYSHAFQMVTEFYAKDVVDVKGSQSFSGIINLEKAVICSLAAIIRYLKDFNLEKVLSK 513 Query: 276 PTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSITGAGGRLFAERI 334 P + + + I+ NLEIL+ + + + SLL +D++ T G R + + Sbjct: 514 PK-NFKQFSGEMEFMTINGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTAFGRRKLKKWV 572 Query: 335 ASPLTDSTKINTRLDSIN-FFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAV 393 PL IN RLD+++ + I+ L+ PD+ R L + + ++ + Sbjct: 573 TQPLLKIRDINARLDAVSEVLYSESSVFGQIENHLRKLPDIERGLCSIYHKKCSTQEFFL 632 Query: 394 I-------RDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTF 446 I + ++ + +N +++DL LR + ++ +L +E+ L +L++ Sbjct: 633 IVKTLHHLKSEFQALVPAVNSHVQSDL---LRTFILEIPELLSPVERYL-KILNEQAAKI 688 Query: 447 KRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK-IKNLKIKHNNNLG--YFI 503 +D +D L + R +D+ + + +Q E K IKN ++ G + I Sbjct: 689 GDKTELFKDLSDFPLIKKR--KDEIQEVTHRIQRHLQEIRKIIKNPSAQYVTVSGQEFLI 746 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL--ES 561 EV +S+ S + D ++ + ++RF + +++ R N L+++ E Sbjct: 747 EVKNSAVSCIPTD------WVKIGSTKAVSRFHSPFVVE-NYRHLNQLREQLVLDCSAEW 799 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 E L N E SL A +A +D +LA +AK+ +YCRP + ++K+GRHP+ Sbjct: 800 LEFLEN-FSEHYHSLCKAVHHLATVDCIFSLAKVAKQGDYCRPTLQEERKILIKNGRHPV 858 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 ++ L +Q ++ N +LS +S ++ ++TGPNMGGKS++++Q ALI +MAQ+GS Sbjct: 859 IDVLLGEQDQ--YVPNSTNLS----GDSERVMIITGPNMGGKSSYIKQVALITVMAQIGS 912 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 YVPA A IGIVD +F+R+G+ADN+ GRSTFM E+ +TA I+ +AT+QS VILDE+GRG Sbjct: 913 YVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRG 972 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR----FHNATLQVSDSNE 797 T+T DG++IA+AT+E+ + L TH+ + +L +S + +H L D ++ Sbjct: 973 TSTHDGIAIAYATLEHFIRDVKSLTLFVTHYPPVCELERSYSQQVGNYHMGFLVNEDDSK 1032 Query: 798 G-----------IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN 846 + FL+++ GIA SYG+ V KLA +P ++ +A K E L + Sbjct: 1033 PDQGEEEQVPDFVTFLYQITKGIAARSYGLNVAKLADVPGEILKKAASKSKELEGLVNMK 1092 Query: 847 QKDMRLYYPEIQTKESKNNLSKNDKLFVEKI 877 +K ++ + ++++ + D+ +E+I Sbjct: 1093 RKRLKCFAKLWTINDAEDLRKRTDEFEMEEI 1123 >gi|301761694|ref|XP_002916275.1| PREDICTED: DNA mismatch repair protein Msh3-like, partial [Ailuropoda melanoleuca] Length = 1123 Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 249/910 (27%), Positives = 450/910 (49%), Gaps = 115/910 (12%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ QYIE+K D+++ G Y F +DA +A+R L I HL + Sbjct: 218 TPLELQYIELKQQQKDAILCVECGYKYRFFGEDAEIAARELNIYC-----HLDHNFMTAS 272 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESP-LEAKKRGNKSLVRRNVVRLVTPGTLTE--- 141 +P H ++++L+ G+++ + +Q E+ L+A SL R + L T TL Sbjct: 273 IPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAVGDNRSSLFSRKLTALYTKSTLIGEDV 332 Query: 142 ------------DQLLSPTDSNYLMAVARIRTEW----------AIAWIDISTG-----I 174 D++++ + +++L+ + + I + +TG Sbjct: 333 NPLVKVDDAVNVDEIITDSSTSFLLCICENKENIKDKKKGNIFIGIVGVQPATGEVVFDS 392 Query: 175 FKISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQP---------- 224 F+ S S + L + I+ + P E++ SH ++ E L + A A Sbjct: 393 FQDSASRSE-LETRILCLQPVELLLP----SHLSEQT--EALIHRATAASVRDDRIRVER 445 Query: 225 --NVFFDHSISESRIADYYNITTVD-----TFGSFSQVEK---TAAAAAISYIKK---TQ 271 N++FD+S + + ++Y VD +F +EK + AA I Y+K+ + Sbjct: 446 MDNMYFDYSHAFQAVTEFYAKDAVDIQASQSFSGIINLEKPVICSLAAIIRYLKEFNLEK 505 Query: 272 MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSITGAGGRLF 330 +++KP + + + I+ NLEIL+ + + + SLL +D++ T G R Sbjct: 506 VLSKPK-NFKQLSGEMEFMTINGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKL 564 Query: 331 AERIASPLTDSTKINTRLDSINFFIQN-PILINPIQKILKSSPDVPRSLSRLKIGRGEPK 389 + + PL +IN RLD+++ + + + I+ L+ PD+ R L + + + Sbjct: 565 KKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIERGLCSIYHKKCSTQ 624 Query: 390 DIAVI-------RDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD 442 + +I + ++ I +N +++DL L+ + ++ +L +E L +L++ Sbjct: 625 EFFLIVKTLYHLKSEFQALIPAVNSHVRSDL---LQTFILEIPELLSPVEHYLR-ILNEQ 680 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI-KNLKIKHNNNLG- 500 +D D L + R +D+ + + +Q+ E KI KN I++ G Sbjct: 681 AAKTGDKTELFKDLTDFPLIKKR--KDEIQEVTDKIQIHLQEIRKILKNPSIRYVTVSGQ 738 Query: 501 -YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 + IE+ +S+ S + D ++ + ++RF + +++ R N L+++ Sbjct: 739 EFMIEMKNSAVSCIPTD------WVKVGSTKAVSRFHSPFIVE-NYRHLNQLREQLVLDC 791 Query: 560 --ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E + L N E SL A +A ID +LA +AK+ +YCRP + ++K+G Sbjct: 792 SAEWLDFLEN-FSEHYHSLCKAVHHLATIDCIFSLAKVAKQGDYCRPTLQEERKIVIKNG 850 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP+++ L +Q ++ N +LS +S ++ ++TGPNMGGKS++++Q ALI +MA Sbjct: 851 RHPVIDVLLGEQDQ--YVPNSTNLS----GDSERVMIITGPNMGGKSSYIKQVALITVMA 904 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+GSYVPA A IGIVD +F+R+G+ADN+ G+STFM E+ +TA I+ QAT+QS VILDE Sbjct: 905 QIGSYVPAEEATIGIVDGIFTRMGAADNIYKGQSTFMEELTDTAEIIRQATSQSLVILDE 964 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS----LKRFHNATLQVS 793 +GRGT+T DG++IA+AT+E+ + L TH+ + +L KS + +H L Sbjct: 965 LGRGTSTHDGIAIAYATLEHFIRDVKSLTLFVTHYPPVCELEKSYLQQVGNYHMGFLVNE 1024 Query: 794 DSNEG----------IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY 843 D ++ + FL+++ GIA SYG+ V KLA +P ++++A K E L Sbjct: 1025 DESKEDPGEEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEILTKAASKSKELEGLV 1084 Query: 844 HHNQKDMRLY 853 + +K ++ + Sbjct: 1085 NMKRKRLKCF 1094 >gi|327262723|ref|XP_003216173.1| PREDICTED: DNA mismatch repair protein Msh6-like [Anolis carolinensis] Length = 1361 Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 268/952 (28%), Positives = 437/952 (45%), Gaps = 148/952 (15%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 E+ LK+ TP MR++ E+KS D ++FY++G FYEL+ DA++ LG+ K Sbjct: 403 EDYLKNCTPGMRKWWELKSQYFDCVLFYKVGKFYELYHMDAVVGVSKLGLAFMK------ 456 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESP--LEAKKRG------NKSLVRRNV 130 G P + + L++ G+++ EQ+E+P +EA+ + +V R V Sbjct: 457 GTWAHSGFPEIAYDRFSNTLVQKGYKVVRIEQMETPEMMEARCKSMAHPTKYDRVVHREV 516 Query: 131 VRLVTPGTLTE---DQLLSPTDSNYLMAV-------ARIRTEWAIAWIDISTGIFKISTS 180 R+++ GT T D S T S YL+ + A + + + ++D + G F + Sbjct: 517 CRIISKGTQTYSILDGDFSDTHSKYLLCIKEKCDDSAGLHYTYGVCFVDTTVGKFYLGQF 576 Query: 181 NHDRLISDIMRI----DPREIIFSEKELSHAEYKSLFETL-------GNVAVAQPNVFFD 229 DR S + + P +I+F E+ E + + ++L G +A +Q F+ Sbjct: 577 LDDRHCSRLRTLLAHYPPVQILF-ERGNPSGETQKILKSLLPSSVQEGLIAGSQ---FWK 632 Query: 230 HS------ISESRIADYYN----------ITTVD--------TFGSFSQVEKTAAAAAIS 265 S I E D N I ++ T G S++ +A I Sbjct: 633 ASKTLKTLIEEDYFQDKENPNSGVVLPPVIKSMTAESDSLGLTPGENSELALSALGCCIY 692 Query: 266 YIKKTQMVNKPTIGYPEREDI------------QSTLF--------IDSAARSNLEILRT 305 Y+KK +++K + + E+ S++F +D +NLEIL Sbjct: 693 YLKKC-IIDKDILSMAKFEEYVPVDIDIGKEIKTSSIFAKTNQRMVLDGVTLANLEILEN 751 Query: 306 LSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQ 365 +GS E +LL+ ID T G RL + + +PL + IN RLD++ + ++ I+ Sbjct: 752 ATGSPEGTLLERIDTCCTPFGKRLLKQWLCAPLCNPCAINDRLDAVENLLAEAARVSEIR 811 Query: 366 KILKSSPDVPRSLSRL-KIG-----RGEPKDIAVIRDGIRSG------------------ 401 LK PD+ R LS++ IG P + AV+ + R Sbjct: 812 DHLKKLPDLERLLSKIHSIGFSLKNPNHPDNRAVMYEEGRYSKKKILDFLSALEGFKVVV 871 Query: 402 --INILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTF----KRDGGFLRD 455 I+IL + + + LR V K P+ L+ L F R G + Sbjct: 872 EIISILEDVVDSFTSKILRQTVTLKSKNPEGCFPDLTEELKKWDAAFDHTTARKTGVINP 931 Query: 456 GADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG-----YFIEVTSSSA 510 D +++ D + I +Y EE + K L I+ G Y IE+ ++ Sbjct: 932 KPGFDSDYDKAVEDITN--IEEYLRQYLEEQR-KRLGIRAMMYWGAGKNRYQIEIAETA- 987 Query: 511 SVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAII 570 + +DL + ++ + + R+ T + + N+I NA + + L Sbjct: 988 --VPRDLPND--YVLKSSRKGYKRYWTKDTEKMLNKIVNAEERRDAAQKACMKRLFYDFD 1043 Query: 571 EQSESLDNASQVIAIIDISIALAILAK--EQNYCRPII----DNSTNFI-VKDGRHPIVE 623 + S A IA++D+ LA ++ + CRPII +N+ F+ +++ RHP + Sbjct: 1044 KNSRDWQAAVDCIAVLDVLQCLAHHSQGCDGPVCRPIILLPDENTPPFLELENSRHPCIT 1103 Query: 624 KTLKQQSSKPFIANDCDLSCP----NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 KT FI ND + N + L+TGPNMGGKST +RQ L+VIMAQ+ Sbjct: 1104 KTFFGDD---FIPNDIFIGVKDVKGNSEAKAPCILVTGPNMGGKSTLMRQAGLLVIMAQL 1160 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 G +VPA + VD++F+R+G++D + SG STF VE+ ET+S+L AT SFV++DE+G Sbjct: 1161 GCFVPAESCRLTPVDRVFTRLGASDRIMSGESTFFVELSETSSVLRHATEHSFVLMDELG 1220 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTD---LSKSLKRFHNATLQVSD-- 794 RGTAT DG +IA A ++ L E RCR + +TH+H L + S++ H A + ++ Sbjct: 1221 RGTATFDGTAIANAVVKELSENIRCRAMFSTHYHSLVEDYTRCPSVQLGHMACMVENESE 1280 Query: 795 --SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYH 844 S E I FL+K I G SYG +LA +P VI + + K FE++ H Sbjct: 1281 DPSQETITFLYKFIKGACPKSYGFNAARLADIPEEVIQKGHKKAKEFERITH 1332 >gi|196010013|ref|XP_002114871.1| hypothetical protein TRIADDRAFT_58819 [Trichoplax adhaerens] gi|190582254|gb|EDV22327.1| hypothetical protein TRIADDRAFT_58819 [Trichoplax adhaerens] Length = 907 Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 236/827 (28%), Positives = 388/827 (46%), Gaps = 155/827 (18%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGV- 86 +++QY +IK D ++ +++G+ YE++ DA + + + L ++ + V Sbjct: 60 LLKQYRDIKQSYQDFVLIFQIGEAYEVYDKDADIVASKSTLPLLDTANNMESTSALLRVR 119 Query: 87 -PVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P H + ++ L + +IAIC + + + + +L R V ++ TPGT T + Sbjct: 120 FPKHQVDDVVKTLCREKVKIAICNEQTT----RSTTSANLRERKVTKIFTPGTYTFAEYN 175 Query: 146 SPTD-SNYLMAVARIRTE-WAIAWIDISTGIFKISTSN-------HDRLISDIMRIDPRE 196 S D SNYL+++ E ++WID++ F+I + +++ + ++ P + Sbjct: 176 SSIDTSNYLLSIVDGPEETLGLSWIDVAAQDFQIGARTNVTVFLEYAQILCAMRKVKPSQ 235 Query: 197 IIFSE-----KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS 251 + F + L + + L ETL + Q +H + + +TT FG Sbjct: 236 LEFEACRVLMQYLDYIDEHLLLETLKPLKFKQD----EHMLIDPTTRKSLELTTT-MFG- 289 Query: 252 FSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 A+ + K +VN Sbjct: 290 -----------AVPTVSKGTLVN------------------------------------- 301 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 +D ++T AG ++ R+ +P T+ +I RLD ++ F NP I K ++ Sbjct: 302 -----VLDRTVTSAGRKILTARVTAPSTNVNEIQRRLDFVSIFATNPGCATDIHKCMQGC 356 Query: 372 PDVPRSLSRLKIGRG------EPKDIAVIRDGIRSGINILNLFLKNDL-PEELRGAVEKL 424 ++ L + + G E I +I D I+ L+N + ++ E L Sbjct: 357 HNMDVLLRTISMNLGSIDTLRELMKILIISDDIKD-------ILRNRISASDVLAVAEDL 409 Query: 425 KKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAE 484 EK + S+++ D G G A DE L+ + +L+++ + Sbjct: 410 GNFIDLKEKLIRSVMN------ATDNGLFAKGYCAEADEIELLKANNDHQANNLRMQLSN 463 Query: 485 ETKIKNLKI------------------KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHR 526 + + L + K +N+ GYF+ +S S K +E Sbjct: 464 QFGLPRLDLLTSRDFHRSFCISSPAANKISNHHGYFVIDAGTSGS--SKKIE-------- 513 Query: 527 QTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAII 586 F+ EL +L + ++ + F L II + L Q +A + Sbjct: 514 --------FSIPELEELNTEWLQLHRRQIELQQKLFTDLRAKIIPLVDELTVTGQTLAEL 565 Query: 587 DISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPND 646 D++ AL I A E+ YCRP+I T F +K+GRHPI++ + ++N+C+L N+ Sbjct: 566 DVACALGIGAHERGYCRPLITEDTTFDIKNGRHPIIDAYYSEMC----VSNNCNL---NE 618 Query: 647 KNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHI-----GIVDKLFSRVG 701 KN +W++TGPNM GKSTFLRQNALI IMAQMGS+VPA A I GIVD++F+RVG Sbjct: 619 KN---VWIITGPNMAGKSTFLRQNALIAIMAQMGSFVPAQSAKIGTILLGIVDRIFARVG 675 Query: 702 SADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHET 761 + DN+A RSTFMVEM E+A IL+ AT SFV+LDEIGRGT+TLDG+S+A A +EY HE Sbjct: 676 ACDNIAQHRSTFMVEMTESAYILSHATPNSFVVLDEIGRGTSTLDGISVAQAILEYFHEV 735 Query: 762 NRCRGLLATHFHELTDLSKSLKRFHNATLQVS---DSNEGIIFLHKV 805 RCR L ATH+H+L L+ +LK ++ QVS +S+ I++L+K+ Sbjct: 736 IRCRTLCATHYHQLGKLATTLK--SASSYQVSAKKNSDGAIMYLYKI 780 >gi|328866749|gb|EGG15132.1| mutS like protein [Dictyostelium fasciculatum] Length = 1168 Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 255/937 (27%), Positives = 430/937 (45%), Gaps = 141/937 (15%) Query: 8 PQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLG 67 P+ LY + L + TP RQ+ EIK N D++VF++ G FYEL+ +DA + + G Sbjct: 228 PRTLYIPPV----KLSTFTPFERQFWEIKMKNYDTVVFFKKGKFYELYENDADIGNEKFG 283 Query: 68 ITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR------- 120 + +T R ++ M GVP + + K I G+++A +Q+ES KR Sbjct: 284 LKMTDR-----VNMRMVGVPEASFTTWAAKFIDQGYKVAKVDQMESSYGMAKRQKQDGGS 338 Query: 121 --GNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVAR--IRTEWAIAWIDISTGIFK 176 KS+++R +V ++T GTL ++ LL+ ++YLMA+ A+ ++D S G+F Sbjct: 339 ADKTKSIIQRQLVSVLTLGTLVDENLLTEQTASYLMAIKEDDYNKILAVCFVDTSVGLFY 398 Query: 177 IST----SNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSI 232 ++ N +L + +++ P+EII + S+ + + L H I Sbjct: 399 TTSFKDDENRTQLETILLQTMPKEIIVEKTGYSNTTMQLIKRILSRQR---------HII 449 Query: 233 SESRIADYYNITTVDTFGSFSQ------------VEKTAAAAAISYIKKTQMVNKPTIGY 280 ++ +Y+ + +Q + +A A +SY+ + + + + Sbjct: 450 NQRTPLEYWAPDQIQGAIKANQGLPIPAEIVNDEMMMSAVGACLSYLFDIK-IGEDMVKQ 508 Query: 281 PEREDIQS--------TLFIDSAARSNLEILR-TLSGSREQSLLKTIDYSITGAGGRLFA 331 E S L +D NLEI T G +E SL K +D TG G RL Sbjct: 509 ARYEQYNSQASGGSGGALVLDGQCLINLEIFNNTTDGGKEGSLYKVLDRCQTGFGKRLLR 568 Query: 332 ERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDI 391 + + PL D +IN RLD+++ N + + + PD+ R++SR+ + Sbjct: 569 QWVCRPLADIHRINDRLDAVDALGNNSDIFASLAGMFNKMPDIERTISRIHARSSNVASL 628 Query: 392 AVIRDGIRSGINILN-------------------LFLKNDLPEELRGAVEKLKKLPQSLE 432 + + + + I++ L + D E++ + Sbjct: 629 TSVLNTLETCQQIISDIDYKSNTELSKSKLLANYLMVAEDQDEDIEMKKDNDGYDDDDDN 688 Query: 433 KTLSSMLSDDL--PTFKRDGGFLRDGADASLDE-TRSLRDQSKRI---------IASLQL 480 K S ++ +++ P K+ F+RD S D T+SL + R + S++ Sbjct: 689 KNQSDLVRNNVGFPNLKKKIKFIRDSF--SFDSATQSLTPKPGRFKDYDAGQIEVDSIEK 746 Query: 481 K---YAEET----KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLT 533 K Y EE K + KH Y +E+ SVL + ++ + + Sbjct: 747 KLDEYLEEQRKFFKTSGIVYKHMGKEIYQLEI---PVSVLNR-VKITQEYSLKSDSKTFK 802 Query: 534 RFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDN--------ASQVIAI 585 RF T + + LL + E+ + Q + L N A Q +A Sbjct: 803 RFHTPYI--------EQKSKDLLAARDYLEVTRKTVFVQIQELFNQFHLDWQQAVQCLAH 854 Query: 586 IDISIALAILAKEQNY--CRPII----DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDC 639 ID ++L ++ + Y CRP D+ V + RHP + + FI ND Sbjct: 855 IDCLMSLTRVSHQSTYPMCRPHFIETQDDEPCLSVLEMRHPAISI----KGGADFIPNDL 910 Query: 640 DLS----------CPNDKNSGK--LWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASY 687 L N+ + GK + +LTGPNMGGKST LRQ ++VIMAQMG +VPA+ Sbjct: 911 QLGGLGTEISSTGVKNNSHPGKPSVMVLTGPNMGGKSTLLRQACILVIMAQMGCHVPATS 970 Query: 688 AHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDG 747 + + D++F+R+G+ D++ +G STFM E+ ET+S+L AT +S VI+DE+GRGT+T DG Sbjct: 971 CRMTVFDRIFTRLGANDDIMAGNSTFMTELRETSSVLRYATKRSLVIMDELGRGTSTFDG 1030 Query: 748 LSIAWATIEYLHETNRCRGLLATHFHELTD---LSKSLKRFHNATLQVSDSNEGIIFLHK 804 SIA++ ++Y+ ET + + ATH+ L + + ++ H + V D+ + +IFL+K Sbjct: 1031 YSIAYSVLKYIAETIKSTCIFATHYQSLANEPGIRDTIATSH-MSCHVDDTAKKVIFLYK 1089 Query: 805 VIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 + GI SYG+ VG +AG+P VI A + FEK Sbjct: 1090 LCDGICPDSYGLHVGAMAGIPLQVIQVAEQKARQFEK 1126 >gi|321263883|ref|XP_003196659.1| DNA mismatch repair-related protein [Cryptococcus gattii WM276] gi|317463136|gb|ADV24872.1| DNA mismatch repair-related protein, putative [Cryptococcus gattii WM276] Length = 1210 Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 253/899 (28%), Positives = 414/899 (46%), Gaps = 124/899 (13%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP +Q+ EIK + D+++F++ G FYEL+ DDAL+ + + LT R K + M G Sbjct: 304 TPFEKQFWEIKQNHYDTVLFFQKGKFYELYEDDALIGHQEFDLKLTDRVK-----MKMVG 358 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL-------EAKKRGNKSLVRRNVVRLVTPGT 138 VP + +I K + GH++ I +Q E+ + +K G + +VRR + R+ T GT Sbjct: 359 VPEQSLEFWIAKFLGAGHKVGIVDQAETAIGMEMRTKAGQKTGGREIVRRELARVFTNGT 418 Query: 139 LTEDQLLSPTDSNYLMAVARIR------TEWAIAWIDISTGIFKISTSNHD----RLISD 188 + + L+ D N+L+++ + + I D STG F IS D RL + Sbjct: 419 IVDGGYLNSDDPNHLVSIKESSGGPEGTSSFGICIADASTGEFSISYFEDDVCRTRLETM 478 Query: 189 IMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQ------------------PNVFF-- 228 +I P+E+I ++ LS + L L + Q P++F Sbjct: 479 FRQIRPKELIHAKGNLSVTTTRLLRNILPSSTAWQSFKDGKEFYTAEDTLNLLPSIFSAE 538 Query: 229 --DHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQM------VNKPTIGY 280 + +I E+ + N +++ G + Y+K + I Sbjct: 539 EDESTIPEAITSLQDNALAMESLGGM-----------LFYLKSLNLDKDLFSQRNFNIYD 587 Query: 281 PEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTD 340 P +E L +D ++E+L G E +L + + ++ +G RLF + SPL D Sbjct: 588 PIKEG--KNLILDGKTLGHMEVLVNNEGGIEGTLAELLQRCVSPSGKRLFKIWLRSPLRD 645 Query: 341 STKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRS 400 + IN RLD++ + +P ++ K PD+ R +SR+ G + D Sbjct: 646 ADGINARLDAVEDLMNHPRFSGDFTQLCKGLPDLERLISRIHAGSVKQSDF--------- 696 Query: 401 GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRD----- 455 + ++ F K L+ ++ L + +SLE T L P +R Sbjct: 697 -LQVVESFSK------LQKGIDNLVDMSESLESTGVKALLRSAPDLSGMIEHIRGMYTIE 749 Query: 456 ------------GADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 GAD D + ++ + + + + + K K H+ G I Sbjct: 750 QNEKTIAILPNPGADEECDAADAEVERIEEELNEILEEVKKTLKCKEAVFWHSAQGGKEI 809 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 ASV ++ R+ + R+ T E I + +I A + F+ Sbjct: 810 FQIQIPASV-----KAPARWTKASGTKSHNRYYTPETIPVIRQIQEAREIQAAAKKNFFK 864 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKE--QNYCRP-IIDNSTNFI-VKDGRH 619 L + E+ +VIA +D ++LA + + + CRP + +S+ FI +D RH Sbjct: 865 HLMEEFSKDRETWLTTVRVIAELDCLVSLAKASSDLDEPKCRPTFVSSSSAFIDFRDLRH 924 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P + L+ FI+ND L + + LLTGPNM GKST LR A VIMAQ+ Sbjct: 925 PSM--CLRSD----FISNDVQLG----GDQPRQVLLTGPNMAGKSTLLRMTAAGVIMAQL 974 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 G YVPAS A + VDK+ +R+G+ DN+ + STF VE+ E + IL +A +S VILDE+G Sbjct: 975 GCYVPASEARLSPVDKIQTRMGAYDNMFASASTFKVELDECSRILREAGPKSLVILDELG 1034 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTD---LSKSLKRFHNATLQVSDSN 796 RGT+T DG++IA A + +L + G ATH+ LTD +++R H T V D Sbjct: 1035 RGTSTYDGMAIAGAVLHHLATHSLPLGFFATHYGSLTDDFAYHPNIRRMHMQT-HVDDEQ 1093 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF-----EKLYHHNQKDM 850 + ++FL+K+IPG+A+ S+G V ++AG+P V+ RA + + F EKL + Q M Sbjct: 1094 KQVVFLYKLIPGVAESSHGTHVARMAGVPLDVVLRAESVSQQFFSAFNEKLVNRRQSKM 1152 >gi|134116991|ref|XP_772722.1| hypothetical protein CNBK0960 [Cryptococcus neoformans var. neoformans B-3501A] gi|50255340|gb|EAL18075.1| hypothetical protein CNBK0960 [Cryptococcus neoformans var. neoformans B-3501A] Length = 1205 Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 251/899 (27%), Positives = 416/899 (46%), Gaps = 124/899 (13%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP +Q+ EIK + D+++F++ G FYEL+ DDAL+ + + LT R K + M G Sbjct: 299 TPFEKQFWEIKQNHYDTVLFFQKGKFYELYEDDALIGHQEFDLKLTDRVK-----MKMVG 353 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL-------EAKKRGNKSLVRRNVVRLVTPGT 138 VP + +I K + GH++ I +Q E+ + +K G + +VRR + R+ T GT Sbjct: 354 VPEQSLEFWIAKFLGAGHKVGIVDQAETAIGMEMRTKAGQKTGGREIVRRELARVFTNGT 413 Query: 139 LTEDQLLSPTDSNYLMAVARIR------TEWAIAWIDISTGIFKISTSNHD----RLISD 188 + + L+ D N+L+++ + + I D STG F IS D RL + Sbjct: 414 IVDSGYLNSDDPNHLVSIKESSGSPEGISSFGICIADASTGEFSISFFEDDVCRTRLETM 473 Query: 189 IMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQ------------------PNVFFDH 230 +I P+E+I ++ LS + L L + Q P++F + Sbjct: 474 FRQIRPKELIHAKGNLSVTTTRLLRNILPSSTAWQSFRDGKEFYTAEDTLSLLPSIFSNE 533 Query: 231 ----SISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQM------VNKPTIGY 280 +I E+ + N +++ G + Y+K + I Sbjct: 534 QGQITIPEAITSLQDNALAMESLGGM-----------LFYLKSLNLDKDLFSQRNFNIYD 582 Query: 281 PEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTD 340 P +E L +D ++E+L G E +L + + ++ +G RLF + SPL D Sbjct: 583 PIKEG--KNLILDGKTLGHMEVLVNNEGGIEGTLAELLQRCVSPSGKRLFKVWLRSPLRD 640 Query: 341 STKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRS 400 + IN RLD++ + +P ++ K PD+ R +SR+ G + D Sbjct: 641 ADAINARLDAVEDLMNHPRFSGDFTQLCKGLPDLERLISRIHAGSVKQSDF--------- 691 Query: 401 GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRD----- 455 + ++ F K L+ ++ L + +SLE T L P +R Sbjct: 692 -LQVVESFSK------LQKGIDNLIDMSESLESTGVKALLRSAPDLSGMIQHIRGMYTIE 744 Query: 456 ------------GADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 GAD D + ++ + + + + + K K H+ G I Sbjct: 745 QNEKTIAILPNPGADEECDAADAEVERIEEELNEILEEVKKTLKCKEAVFWHSAQGGKEI 804 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 ASV ++ R+ + R+ T E I + +I A + + F+ Sbjct: 805 FQIQVPASV-----KAPARWTKASGTKSHNRYYTPETIPVIRQIQEARETQAAAKKNFFK 859 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN--YCRP-IIDNSTNFI-VKDGRH 619 L + + E+ +VIA +D ++LA + + + CRP + +S+ FI +D RH Sbjct: 860 HLMDEFSKDRETWLITVRVIAELDCLVSLAKASSDMDEPKCRPTFVSSSSAFIDFRDLRH 919 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P + L+ FI+ND L + + LLTGPNM GKST LR A VIMAQ+ Sbjct: 920 PSM--CLRSD----FISNDVQLG----GDQPRQVLLTGPNMAGKSTLLRMTAAGVIMAQL 969 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 G YVPAS A + VDK+ +R+G+ DN+ + STF VE+ E + IL +A +S VILDE+G Sbjct: 970 GCYVPASEARLSPVDKIQTRMGAYDNMFASASTFKVELDECSRILREAGPKSLVILDELG 1029 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTD---LSKSLKRFHNATLQVSDSN 796 RGT+T DG++IA A + ++ + G ATH+ LTD +++R H T V D Sbjct: 1030 RGTSTYDGMAIAGAVLHHIATHSLPLGFFATHYGSLTDDFAYHPNIRRMHMQT-HVDDEQ 1088 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF-----EKLYHHNQKDM 850 + ++FL+K+IPG+A+ S+G V ++AG+P V+ RA + + F +KL + Q M Sbjct: 1089 KQVVFLYKLIPGVAESSHGTHVARMAGVPLDVVLRAESVSQQFFSAFNDKLVNRRQSKM 1147 >gi|58260898|ref|XP_567859.1| mismatch repair-related protein [Cryptococcus neoformans var. neoformans JEC21] gi|57229940|gb|AAW46342.1| mismatch repair-related protein, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 1205 Score = 298 bits (762), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 251/899 (27%), Positives = 416/899 (46%), Gaps = 124/899 (13%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP +Q+ EIK + D+++F++ G FYEL+ DDAL+ + + LT R K + M G Sbjct: 299 TPFEKQFWEIKQNHYDTVLFFQKGKFYELYEDDALIGHQEFDLKLTDRVK-----MKMVG 353 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL-------EAKKRGNKSLVRRNVVRLVTPGT 138 VP + +I K + GH++ I +Q E+ + +K G + +VRR + R+ T GT Sbjct: 354 VPEQSLEFWIAKFLGAGHKVGIVDQAETAIGMEMRTKAGQKTGGREIVRRELARVFTNGT 413 Query: 139 LTEDQLLSPTDSNYLMAVARIR------TEWAIAWIDISTGIFKISTSNHD----RLISD 188 + + L+ D N+L+++ + + I D STG F IS D RL + Sbjct: 414 IVDSGYLNSDDPNHLVSIKESSGSPEGISSFGICIADASTGEFSISFFEDDVCRTRLETM 473 Query: 189 IMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQ------------------PNVFFDH 230 +I P+E+I ++ LS + L L + Q P++F + Sbjct: 474 FRQIRPKELIHAKGNLSVTTTRLLRNILPSSTAWQSFRDGKEFYTAEDTLNLLPSIFSNE 533 Query: 231 ----SISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQM------VNKPTIGY 280 +I E+ + N +++ G + Y+K + I Sbjct: 534 QGQTTIPEAITSLQDNALAMESLGGM-----------LFYLKSLNLDKDLFSQRNFNIYD 582 Query: 281 PEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTD 340 P +E L +D ++E+L G E +L + + ++ +G RLF + SPL D Sbjct: 583 PIKEG--KNLILDGKTLGHMEVLVNNEGGIEGTLAELLQRCVSPSGKRLFKVWLRSPLRD 640 Query: 341 STKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRS 400 + IN RLD++ + +P ++ K PD+ R +SR+ G + D Sbjct: 641 ADAINARLDAVEDLMNHPRFSGDFTQLCKGLPDLERLISRIHAGSVKQSDF--------- 691 Query: 401 GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRD----- 455 + ++ F K L+ ++ L + +SLE T L P +R Sbjct: 692 -LQVVESFSK------LQKGIDNLIDMSESLESTGVKALLRSAPDLSGMIQHIRGMYTIE 744 Query: 456 ------------GADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 GAD D + ++ + + + + + K K H+ G I Sbjct: 745 QNEKTIAILPNPGADEECDAADAEVERIEEELNEILEEVKKTLKCKEAVFWHSAQGGKEI 804 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 ASV ++ R+ + R+ T E I + +I A + + F+ Sbjct: 805 FQIQVPASV-----KAPARWTKASGTKSHNRYYTPETIPVIRQIQEARETQAAAKKNFFK 859 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN--YCRP-IIDNSTNFI-VKDGRH 619 L + + E+ +VIA +D ++LA + + + CRP + +S+ FI +D RH Sbjct: 860 HLMDEFSKDRETWLITVRVIAELDCLVSLAKASSDMDEPKCRPTFVSSSSAFIDFRDLRH 919 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P + L+ FI+ND L + + LLTGPNM GKST LR A VIMAQ+ Sbjct: 920 PSM--CLRSD----FISNDVQLG----GDQPRQVLLTGPNMAGKSTLLRMTAAGVIMAQL 969 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 G YVPAS A + VDK+ +R+G+ DN+ + STF VE+ E + IL +A +S VILDE+G Sbjct: 970 GCYVPASEARLSPVDKIQTRMGAYDNMFASASTFKVELDECSRILREAGPKSLVILDELG 1029 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTD---LSKSLKRFHNATLQVSDSN 796 RGT+T DG++IA A + ++ + G ATH+ LTD +++R H T V D Sbjct: 1030 RGTSTYDGMAIAGAVLHHIATHSLPLGFFATHYGSLTDDFAYHPNIRRMHMQT-HVDDEQ 1088 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF-----EKLYHHNQKDM 850 + ++FL+K+IPG+A+ S+G V ++AG+P V+ RA + + F +KL + Q M Sbjct: 1089 KQVVFLYKLIPGVAESSHGTHVARMAGVPLDVVLRAESVSQQFFSAFNDKLVNRRQSKM 1147 >gi|281350300|gb|EFB25884.1| hypothetical protein PANDA_004330 [Ailuropoda melanoleuca] Length = 1074 Score = 297 bits (761), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 248/897 (27%), Positives = 444/897 (49%), Gaps = 113/897 (12%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ QYIE+K D+++ G Y F +DA +A+R L I HL + Sbjct: 206 TPLELQYIELKQQQKDAILCVECGYKYRFFGEDAEIAARELNIYC-----HLDHNFMTAS 260 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESP-LEAKKRGNKSLVRRNVVRLVTPGTLTE--- 141 +P H ++++L+ G+++ + +Q E+ L+A SL R + L T TL Sbjct: 261 IPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAVGDNRSSLFSRKLTALYTKSTLIGEDI 320 Query: 142 ----------DQLLSPTDSNYLMAVARIRTEW----------AIAWIDISTG-----IFK 176 D++++ + +++L+ + + I + +TG F+ Sbjct: 321 LFKVDDAVNVDEIITDSSTSFLLCICENKENIKDKKKGNIFIGIVGVQPATGEVVFDSFQ 380 Query: 177 ISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQP------------ 224 S S + L + I+ + P E++ SH ++ E L + A A Sbjct: 381 DSASRSE-LETRILCLQPVELLLP----SHLSEQT--EALIHRATAASVRDDRIRVERMD 433 Query: 225 NVFFDHSISESRIADYYNITTVD-----TFGSFSQVEK---TAAAAAISYIKK---TQMV 273 N++FD+S + + ++Y VD +F +EK + AA I Y+K+ +++ Sbjct: 434 NMYFDYSHAFQAVTEFYAKDAVDIQASQSFSGIINLEKPVICSLAAIIRYLKEFNLEKVL 493 Query: 274 NKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSITGAGGRLFAE 332 +KP + + + I+ NLEIL+ + + + SLL +D++ T G R + Sbjct: 494 SKPK-NFKQLSGEMEFMTINGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKLKK 552 Query: 333 RIASPLTDSTKINTRLDSINFFIQN-PILINPIQKILKSSPDVPRSLSRLKIGRGEPKDI 391 + PL +IN RLD+++ + + + I+ L+ PD+ R L + + ++ Sbjct: 553 WVTQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIERGLCSIYHKKCSTQEF 612 Query: 392 AVI-------RDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLP 444 +I + ++ I +N +++DL L+ + ++ +L +E L +L++ Sbjct: 613 FLIVKTLYHLKSEFQALIPAVNSHVRSDL---LQTFILEIPELLSPVEHYLR-ILNEQAA 668 Query: 445 TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI-KNLKIKHNNNLG--Y 501 +D D L + R +D+ + + +Q+ E KI KN I++ G + Sbjct: 669 KTGDKTELFKDLTDFPLIKKR--KDEIQEVTDKIQIHLQEIRKILKNPSIRYVTVSGQEF 726 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL-- 559 IE+ +S+ S + D ++ + ++RF + +++ R N L+++ Sbjct: 727 MIEMKNSAVSCIPTD------WVKVGSTKAVSRFHSPFIVE-NYRHLNQLREQLVLDCSA 779 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 E + L N E SL A +A ID +LA +AK+ +YCRP + ++K+GRH Sbjct: 780 EWLDFLEN-FSEHYHSLCKAVHHLATIDCIFSLAKVAKQGDYCRPTLQEERKIVIKNGRH 838 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+++ L +Q ++ N +LS +S ++ ++TGPNMGGKS++++Q ALI +MAQ+ Sbjct: 839 PVIDVLLGEQDQ--YVPNSTNLS----GDSERVMIITGPNMGGKSSYIKQVALITVMAQI 892 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPA A IGIVD +F+R+G+ADN+ G+STFM E+ +TA I+ QAT+QS VILDE+G Sbjct: 893 GSYVPAEEATIGIVDGIFTRMGAADNIYKGQSTFMEELTDTAEIIRQATSQSLVILDELG 952 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS----LKRFHNATLQVSDS 795 RGT+T DG++IA+AT+E+ + L TH+ + +L KS + +H L D Sbjct: 953 RGTSTHDGIAIAYATLEHFIRDVKSLTLFVTHYPPVCELEKSYLQQVGNYHMGFLVNEDE 1012 Query: 796 NEG----------IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 ++ + FL+++ GIA SYG+ V KLA +P ++++A K E L Sbjct: 1013 SKEDPGEEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEILTKAASKSKELEGL 1069 >gi|254672616|emb|CBA06356.1| DNA mismatch repair protein MutS [Neisseria meningitidis alpha275] Length = 761 Score = 297 bits (761), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 200/643 (31%), Positives = 324/643 (50%), Gaps = 45/643 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +PMM+QY+ IK+ + D LVFYRMGDFYE+FFDDA+ A++ L ITLT RG+ G+ + M G Sbjct: 7 SPMMQQYLGIKAQHTDKLVFYRMGDFYEMFFDDAVEAAKLLDITLTTRGQVDGEPVKMAG 66 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H Y+ +L+K+G +AICEQ+ + K V R VVR+VTPGTLT+ LL Sbjct: 67 VPFHAVEQYLARLVKLGKSVAICEQV-----GEVGAGKGPVERKVVRIVTPGTLTDSALL 121 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 ++N ++AV+ + +AW + +G FK + D+L ++ R+ EI+ + Sbjct: 122 EDKETNRIVAVSPDKKYIGLAWASLQSGEFKTKLTTVDKLDDELARLQAAEILLPDS--- 178 Query: 206 HAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTF---GSFSQVEKTAAA 261 K+ + V + N + F E + +Y+ + F G V AA Sbjct: 179 ----KNAPQLQTASGVTRLNAWQFAADAGEKLLTEYFGCQDLRGFGLDGKEHAVAIGAAG 234 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYS 321 A ++YI+ TQ + + E + +D+A R NLEI +TLSG + +L+ T+D Sbjct: 235 ALLNYIRLTQNLMPQHLDGLSLETDSQYIGMDAATRRNLEITQTLSGKKSPTLMSTLDLC 294 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G RL A + PL + I R +++ P+Q LKS D+ R +R+ Sbjct: 295 ATHMGSRLLALWLHHPLRNRAHIRARQEAVAALESQ---YKPLQCRLKSIADIERIAARI 351 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKL-PQSLE--KTLSSM 438 +G P+D+A +RD + + I +L E + LK + P++L + L Sbjct: 352 AVGNARPRDLAALRDSLFALSEI-------ELSAECSSLLGTLKAVFPENLSTAEQLRQA 404 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + + + +DG + G LDE R +++ + L+ K E T + LK++ N Sbjct: 405 ILPEPSVWLKDGNVINHGFHPELDELRRIQNHGDEFLLDLEAKERERTGLSTLKVEFNRV 464 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 G++IE++ + A D + RQT+ N RF T EL E+++ A AL +E Sbjct: 465 HGFYIELSKTQAEQAPADYQR------RQTLKNAERFITPELKAFEDKVLTAQEQALALE 518 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 + F+ + + L A++ A +D+ + LAKE+N+ RP + +++GR Sbjct: 519 KQLFDGVLKNLQTALPQLQKAAKAAAALDVLSTFSALAKERNFVRPEFADYPVIHIENGR 578 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 HP+VE+ ++ F AN DL + +L LLTGP G Sbjct: 579 HPVVEQQVRH-----FTANHTDLD-----HKHRLMLLTGPQYG 611 >gi|323304608|gb|EGA58371.1| Msh1p [Saccharomyces cerevisiae FostersB] Length = 745 Score = 297 bits (760), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 236/765 (30%), Positives = 371/765 (48%), Gaps = 108/765 (14%) Query: 156 VARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS-HAEYKSLFE 214 VA + I W D+STG + L+S I RI P+EI+ E+ L H E + + Sbjct: 4 VADTSLKVGICWCDVSTGEIFVQQVYLRDLVSAITRIQPKEILLDERLLEFHIESGTWYP 63 Query: 215 TLGNVAVAQPNVFFDHSISESR-IADYYNITTVD-----------TFGSFSQVEKTAAAA 262 L V + + + + S+ R I +Y + + F +F+Q E A Sbjct: 64 EL--VELKKFFIKYQKMPSQHRTIESFYGLFNLGGKEATERQLKIQFQTFTQKELAALRN 121 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYS 321 + Y+ P+R+ + + IDS + LE+ T+ +++ SLL +I + Sbjct: 122 TLIYVSNHLPDFSINFQIPQRQLATAIMQIDSRTSTALELHSTVRDNNKKGSLLSSIRRT 181 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 +T +G RL ++ ++ P D +I R + FF N + ++ +LK D+ R L + Sbjct: 182 VTPSGTRLLSQWLSGPSLDLKEIKKRQKIVAFFKDNRDITETLRTMLKKVNDLSRILQKF 241 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKND--LPEELRGAVEKLKKLPQSLEKTLSSML 439 GRGE ++ + + I L N + L+ ++ +L +SL L Sbjct: 242 SFGRGEALELIQMARSLEVSREIRKYLLNNTSLMKATLKS---QITQLTESL--NFEKNL 296 Query: 440 SDDLPTF------------KRDGGFLR-------DGADASLDETRSLRD---------QS 471 DD+ F K++ R D +++ DE LRD + Sbjct: 297 IDDILKFLNEEELAKSQDAKQNADVTRMLDIDVKDKKESNKDEIFELRDFIVNPSFNTKL 356 Query: 472 KRIIASLQLKYAEETKI--------------KNLKIKHNNNLGYFIEVTSSSASVLK--- 514 +++ + Q + ++T+ K +K N Y + VT +++S+ K Sbjct: 357 RKLHDTYQGVWQKKTEYNALLKGFFVGDLGAKTFTLKERQNGEYALHVTGTASSLKKIDE 416 Query: 515 ---KDLESKDRFIHRQTMSNLTRFTT----------LELIDLENRITNATNSALLIELES 561 K E H S+ TR+ + LEL++L+ R A +I+L Sbjct: 417 LISKSTEYHGSCFHILQKSSQTRWLSHKIWTDLGHELELLNLKIR----NEEANIIDL-- 470 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 I++S + + + +D + A+LA E+N P +D S V +GRH + Sbjct: 471 ---FKRKFIDRSNEVRQVATTLGYLDTLSSFAVLANERNLVCPKVDESNKLEVVNGRHLM 527 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE+ L +S + F AN+C+L+ N LW++TGPNMGGKSTFLRQNA+IVI+AQ+G Sbjct: 528 VEEGLSARSLETFTANNCELAKDN------LWVITGPNMGGKSTFLRQNAIIVILAQIGC 581 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VP S A +GIVDKLFSRVGSAD+L + STFMVEMIET+ IL AT +S ILDEIGRG Sbjct: 582 FVPCSKARVGIVDKLFSRVGSADDLYNEMSTFMVEMIETSFILQGATERSLAILDEIGRG 641 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHF-HELTD---------LSKSLKRFHNATLQ 791 T+ +G+SIA+AT++YL E N+CR L ATHF EL +S+ +K + + Sbjct: 642 TSGKEGISIAYATLKYLLENNQCRTLFATHFGQELKQIIDNKCSKGMSEKVKFYQSGITD 701 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 + +N + HK+ PGI S I+V +LAG P + A +IL Sbjct: 702 LGGNN--FCYNHKLKPGICTKSDAIRVAELAGFPMEALKEAREIL 744 >gi|213613034|ref|ZP_03370860.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 604 Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 193/637 (30%), Positives = 326/637 (51%), Gaps = 57/637 (8%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 +++ + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG Sbjct: 5 FDKDFSNHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASA 64 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G+ IPM G+P H +Y+ KL+ G +AICEQI P + K V R VVR+VTPG Sbjct: 65 GEPIPMAGIPHHAVENYLAKLVNQGESVAICEQIGDPATS-----KGPVERKVVRIVTPG 119 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPRE 196 T++++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E Sbjct: 120 TISDEALLQERQDNLLAAIWQDGKGYGYATLDISSGRFRLSEPADRETMAAELQRTNPAE 179 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 ++++E AE +L E + ++ I +R T D G F VE Sbjct: 180 LLYAE---DFAEM-ALIEGRRGLRRR---PLWEFEIDTARQQLNLQFGTRDLVG-FG-VE 230 Query: 257 KT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 AA + Y+K TQ + P I E Q ++ +D+A R NLEI + L+G E Sbjct: 231 NASRGLCAAGCLLQYVKDTQRTSLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGVE 290 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 +L +D ++T G R+ + P+ ++ + R +I ++ +Q +L+ Sbjct: 291 NTLAAVLDCTVTPMGSRMLKRWLHMPVRNTDILRERQQTIGALQDT---VSELQPVLRQV 347 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP-QS 430 D+ R L+RL + P+D+A +R + LP EL +E + P Q+ Sbjct: 348 GDLERILARLALRTARPRDLARMRHAFQQ------------LP-ELHAQLETVDSAPVQA 394 Query: 431 LEKT----------LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 L K L + D P RDGG + G LDE R+L D + + L++ Sbjct: 395 LRKKMGDFAELRDLLERAIIDAPPVLVRDGGVIAPGYHEELDEWRALADGATDYLDRLEI 454 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 + E T + LK+ +N GY+I+++ + + + ++ RQT+ N R+ EL Sbjct: 455 RERERTGLDTLKVGYNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPEL 508 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 + E+++ + AL +E + ++ L + ++ L ++ +A +D+ + LA A N Sbjct: 509 KEYEDKVLTSKGKALALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLAERAWTLN 568 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIAN 637 Y P + + +GRHP+VE+ L ++PFIAN Sbjct: 569 YTCPTFTDKPGIRITEGRHPVVEQVL----NEPFIAN 601 >gi|331232615|ref|XP_003328969.1| DNA mismatch repair protein mutS [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309307959|gb|EFP84550.1| DNA mismatch repair protein mutS [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1189 Score = 294 bits (752), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 249/848 (29%), Positives = 395/848 (46%), Gaps = 96/848 (11%) Query: 40 PDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLI 99 PD+++ +G FYE +FD A+ ++ L I + + GK P G P+ + +++ L+ Sbjct: 369 PDAILLTCVGSFYEAYFDQAVEVAQLLNIKQAQY-QFAGKTYPFSGFPIASLQKHLKTLV 427 Query: 100 KIGHRI-AICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVAR 158 +RI AI EQI + E + R +VR++TPGT+T++ L+ NYL+ + + Sbjct: 428 NEHNRIVAIAEQISTDEE---------LERRIVRIITPGTITDENLIDDESYNYLLGIHQ 478 Query: 159 IRTEWAIAWIDISTGIFKIST--SNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETL 216 + +AW+D+STG + +T L+ I RI P+EI+ S S F Sbjct: 479 NQ----LAWLDVSTGSYFSTTCEGGESELLDQICRISPKEILIS--------ADSSFRIP 526 Query: 217 GNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKP 276 N A+ ++ IT + + S S E +A YIK+ + ++ Sbjct: 527 PNSKAAKLSML---------------ITKIKSDASISPDELSAEKLIGIYIKRNLLPSRA 571 Query: 277 TIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDYSITGAGGRLFAERIA 335 I P D L +D+ A +LEI+RT +G S SLL TI +IT G RL +RI Sbjct: 572 AI-QPLCVDTFRHLKLDAEAIDSLEIIRTQNGKSAAGSLLSTISRTITRPGKRLLRDRIM 630 Query: 336 SPLTDSTKINTRLDSINFFIQNPILINPIQKILK--SSPDVPRSLSRLKIGRGEPKDIAV 393 SP +I +RLD + + N I IQ LK D R L R +G+G +D+ Sbjct: 631 SPSRVPAEIQSRLDLVGKLVVNHISREDIQDTLKDIEEIDYVRLLQRFNLGQGSIQDLMS 690 Query: 394 IRDGIRSGINILNLFLKNDLPEELRGAV---EKLKKLPQSLEKTLSSMLSDDLPTFKRDG 450 I +++ I + +P L + E + K L + S++ + Sbjct: 691 IVRILKAIKTISSTLSDLGIPSRLGCHLALEENISKAIDELTPAHGQIASEEASIEEAKD 750 Query: 451 GFLRDGADASLDETRSLRDQSKRIIA------SLQLKYAEETKIKNLKIKHNNNLGYFIE 504 F + D + L +R A LQ KY + K+LK++ LG + Sbjct: 751 FFSPASWNVRSDLNKELSSMHQRFTALMEKGKELQAKYRNDFNSKDLKLQVVPKLGAVLI 810 Query: 505 VTSSSASVLKKDLESKDRFIHRQTM-SNLTRFTTL--ELIDLENRITNATNSALLIELES 561 V + A +L+SK + QT+ N +R + + I + E Sbjct: 811 V--NKARKPSSELKSKLDNLKGQTLIDNGSRVVVAVPDWTKMHASIEKLRQELVQAEQRV 868 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 + L + +L+ + +A +D++ + A A E N RP I++ + + +GRHPI Sbjct: 869 LKRLFEQVASDHVTLNPSFHDLAELDVAQSFATFAVETNCVRPSINSKRSTAIVNGRHPI 928 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 E+ L ++ FI N + N G + ++TGPN GGKST+LRQ A++ I+AQ GS Sbjct: 929 AERALSSSANGSFIPNSIVMH----DNDGLVQIITGPNNGGKSTYLRQLAIMHILAQAGS 984 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA A +G+V ++F+R GS DN+ G+ TF++EM ET IL A S V++DE+GRG Sbjct: 985 FVPAEKAKLGLVHQIFTRFGSFDNVVLGKGTFLIEMEETCKILKSADEMSLVLMDEVGRG 1044 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHEL------TDLSKSLKRFHNATLQV--- 792 T DGLSIA+ ++YL E N+CR L +TH + D+ ++ NA L Sbjct: 1045 TGIEDGLSIAYGVLKYLIEKNQCRTLFSTHLPHVGSLLLRKDMGTNVSSSSNANLDGLKA 1104 Query: 793 --------------------SDSNEG-----IIFLHKVIPGIADHSYGIQVGKLAGLPNT 827 D +G + F +++ G+ S GI + KL GLP Sbjct: 1105 KEYLKIAKLGFFCFGSSKIHGDGKKGKQEEILNFPYRIQRGLNPDSSGIDIAKLVGLPKE 1164 Query: 828 VISRAYDI 835 VIS A I Sbjct: 1165 VISHATTI 1172 >gi|19075844|ref|NP_588344.1| MutS protein homolog [Schizosaccharomyces pombe 972h-] gi|39931686|sp|O74502|MSH6_SCHPO RecName: Full=DNA mismatch repair protein msh6 gi|6644186|gb|AAF20943.1|AF207839_1 mismatch repair protein Msh6 [Schizosaccharomyces pombe] gi|3581916|emb|CAA20855.1| MutS protein homolog [Schizosaccharomyces pombe] Length = 1254 Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 236/850 (27%), Positives = 410/850 (48%), Gaps = 68/850 (8%) Query: 27 PMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGV 86 P +Q+ +IK D++VF++ G FYEL+ +DA + + + LT R ++ M G+ Sbjct: 376 PFEKQFWKIKKDLMDTVVFFQKGKFYELYENDAAIGHQVFSLKLTDR-----VNMKMVGI 430 Query: 87 PVHTANHYIQKLIKIGHRIAICEQIESPL--EAKKR----GNKSLVRRNVVRLVTPGTLT 140 P + +++ + I G+RIA +Q+E+ L E K R + +V+R + +++T GTL Sbjct: 431 PEASFDYWASQFIAKGYRIARVDQLETALGKEIKDRQRTQKEEKVVQRGLTQVLTSGTLV 490 Query: 141 EDQLLSPTDSNYLMAVARI------RTEWAIAWIDISTGIFKISTSNHD----RLISDIM 190 ++ +L+ S Y MA+ + I +ID STG F + D +L + + Sbjct: 491 DEAMLTSDLSTYCMAIKESLQSDNEEPSFGICFIDTSTGGFHMCEFTDDIHRTKLDTLLT 550 Query: 191 RIDPREIIFSEKELSHAEYKSLFETLGNVAVA---QPNV-FFDHSISESRI--ADYYN-- 242 ++ P+E+I + ++S +++ + + ++ +P F+D+ E I DY+ Sbjct: 551 QVRPKELILEKSKISQKSIRAIKYCVSSSSIWNFIKPYTEFWDNERVEREIIAGDYFKNG 610 Query: 243 ----ITTVDTFGSFSQVEKTAAAAAISYIKKTQM-VNKPTIGYPEREDI--QST-LFIDS 294 + ++ S + +A A Y+++ ++ + ++G + D QST L ++ Sbjct: 611 LEGAPKILKSYLSEKPLAISAFGALFWYLRQLKLDKDMCSMGNFDEYDASQQSTSLLMNG 670 Query: 295 AARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINF 353 NLEI + G E +L + +T G RLF + PL T IN RLD + Sbjct: 671 QTLKNLEIFSNSFDGGSEGTLFHLLCRCVTPFGKRLFHTWLCHPLRSGTAINARLDVVEL 730 Query: 354 FIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDL 413 NP++ + I L PD+ R +SR+ GR +P D + +G + IN L+ + Sbjct: 731 IADNPVIRDTIWGFLHKLPDLERLISRVHAGRSKPADFVRVLEGFQR-INSAFDQLREEF 789 Query: 414 PEELRGAV--EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRD-GADASLDETRSLRDQ 470 E G + E ++ P E+ + + + +G F + G +A D ++ + + Sbjct: 790 MEVAEGTLLGEIIQSAPNMKEELEAWTRAFNWQKASEEGVFEPEIGFEAEYDTSQKYQSE 849 Query: 471 SKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLK----KDLESKDRFIHR 526 K + +L +Y ++ + +L K+ Y +EV S + + +R+ + Sbjct: 850 LKNELYALLEQYKKQLRCSSLNFKNIGKEVYQVEVPSDVKVPVNWCKMSGTKKTNRYYND 909 Query: 527 QTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAII 586 + + + LE +L I + I +S A+I+ + S+D Sbjct: 910 ELRKKIKKL--LEAEELHLAIMSRMQEKFYIRFDSNYEQWLALIKYTASID------CFF 961 Query: 587 DISIALAILAKEQNYCRPII--DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 +S A A L + YCRP I + ++ RHP + + ++ F+ ND L Sbjct: 962 SLSQAAAALG--EPYCRPEIIEQKDGHLYFEELRHPCINAS----AASTFVPNDVVLG-- 1013 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 S + +LTGPNM GKST LRQ + VIMAQ+G +VPA A I + +++R+G+ D Sbjct: 1014 --GESPNMIVLTGPNMAGKSTLLRQVCIAVIMAQLGCWVPAKRASITPMTSIYTRLGAND 1071 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 ++ S RSTFMVE+ ET IL++ +S VILDE+GRGT+T DG +IA+A + +L C Sbjct: 1072 DIMSARSTFMVELSETKKILDECGPKSLVILDELGRGTSTYDGHAIAYAVLHHLVSNIGC 1131 Query: 765 RGLLATHFHELT-DLSKSLK-RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLA 822 G +TH+ L D + R V + + FL+K+ GI SYG+ V +A Sbjct: 1132 LGFFSTHYQSLCVDFMHHRQVRLMQMAAAVDEKIRRVTFLYKLEDGICPKSYGMNVASMA 1191 Query: 823 GLPNTVISRA 832 GLP VI A Sbjct: 1192 GLPEKVIDAA 1201 >gi|296194224|ref|XP_002744847.1| PREDICTED: DNA mismatch repair protein Msh3 [Callithrix jacchus] Length = 1098 Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 263/928 (28%), Positives = 450/928 (48%), Gaps = 136/928 (14%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ QYIE+K + D+++ G Y F +DA +A+R L I HL + Sbjct: 218 TPLELQYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYC-----HLDHNFMTAS 272 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESP-LEAKKRGNKSLVRRNVVRLVTPGTLTE--- 141 +P H ++++L+ G+++ + +Q E+ L+A SL R + L T TL Sbjct: 273 IPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAVGDNRSSLFSRKLTALYTKSTLIGEDV 332 Query: 142 ------------DQLLSPTDSNYLMAVAR----IRTE------WAIAWIDISTG-----I 174 D +++ T ++YL+ ++ +R + I + +TG Sbjct: 333 NPLIKLDDAVNVDAIMTDTSTSYLLCISENNENVRDKKKGNVFIGIVGVQPATGEVVFDS 392 Query: 175 FKISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNV-------- 226 F+ S S + L + + + P E++ E L +V+V + Sbjct: 393 FQDSASRSE-LETRMSSLQPVELLLPLALSKQTEM--LIHRATSVSVRDDRIRVERMDDT 449 Query: 227 FFDHSISESRIADYYNITTVDTFGS-----FSQVEK---TAAAAAISYIKK---TQMVNK 275 +F++S + + ++Y TVD GS +EK + AA I Y+K+ +M++K Sbjct: 450 YFEYSHAFQAVTEFYAKDTVDFKGSKIISGIINLEKPVICSLAAIIKYLKEFNLEKMLSK 509 Query: 276 PTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSITGAGGRLFAERI 334 P + + + I+ NLEIL+ + + + SLL +D++ T G R + + Sbjct: 510 PE-NFKQLSSKMEFMTINGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKLKKWV 568 Query: 335 ASPLTDSTKINTRLDSINFFIQN-PILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAV 393 PL +IN RLD+++ + + + I+ L PDV R L + + Sbjct: 569 TQPLLKLREINARLDAVSEVLHSESSVFGQIENHLHKLPDVERGLCSIYHKKXXXXXXXX 628 Query: 394 IRDGIRSGINILNLFLKNDLPEELRGAVEK-LKKLPQSLEKTLSSMLSDDLPTFKRDGGF 452 I IL ++PE L G VE LK L + K + D FK Sbjct: 629 XLRTI-----IL------EIPE-LLGPVEHYLKILNEQAAK-----VGDKTELFK----- 666 Query: 453 LRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI-KNLKIKHNNNLG--YFIEVTSSS 509 D +D L + R +D+ + + +++ E KI KN ++ G + IE+ +S+ Sbjct: 667 --DLSDFPLIKKR--KDEIQGVSDKIRIHLQEIRKILKNPSAQYVTVSGQEFMIEIKNSA 722 Query: 510 ASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL--ESFEILSN 567 S + D ++ + ++RF + +++ R N L+++ E + L Sbjct: 723 VSCIPTD------WVKVGSTKAVSRFHSPFIVE-NYRHLNQLREQLVLDCSAEWLDFLEK 775 Query: 568 AIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLK 627 E SL A +A ID +LA +AK+ YCRP + ++K+GRHP+++ L Sbjct: 776 -FSEHYHSLCKAVHHLATIDCIFSLAKVAKQGEYCRPTVQEERKILIKNGRHPVIDVLLG 834 Query: 628 QQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASY 687 +Q ++ N DLS ++S ++ ++TGPNMGGKS++++Q ALI IMAQ+GSYVPA Sbjct: 835 EQDQ--YVPNSTDLS----EDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEE 888 Query: 688 AHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDG 747 A IGIVD +F+R+G+ADN+ GRSTFM E+ +TA I+ +AT+QS VILDE+GRGT+T DG Sbjct: 889 ATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDG 948 Query: 748 LSIAWATIEYLHETNRCRGLLATHFHELTDLSKS----LKRFHNATLQVSDSN------- 796 ++IA+AT+EY + L TH+ + +L K+ + +H L D + Sbjct: 949 IAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMGFLVSEDESRLPPGEE 1008 Query: 797 ---EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI--------------LKTF 839 + + FL+++ GIA+ SYG+ V KLA +P ++ +A LK F Sbjct: 1009 QVPDFVTFLYQITRGIAERSYGLNVAKLADVPGEILKKAAHKSKELEGLINTKRKRLKYF 1068 Query: 840 EKLY-HHNQKDMRLYYPEIQTKESKNNL 866 KL+ HN +D++ + E++ +E++ +L Sbjct: 1069 AKLWTMHNAQDLQKWTEELEMEETQTSL 1096 >gi|125605646|gb|EAZ44682.1| hypothetical protein OsJ_29308 [Oryza sativa Japonica Group] Length = 1293 Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 278/925 (30%), Positives = 438/925 (47%), Gaps = 138/925 (14%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 L S T RQ+ E KS + D ++F++MG FYELF DA + ++ L + +++ D Sbjct: 345 LNSLTGGQRQWWEFKSQHMDKVLFFKMGKFYELFEMDAHVGAKELDL------QYMKGDK 398 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESP----LEAKKRGNK-SLVRRNVVRLVTP 136 P CG P ++KL K G+R+ + EQ E+P L K+ G K +VRR + +VT Sbjct: 399 PHCGFPEKNFELNLEKLAKKGYRVLVIEQTETPEQLDLRRKETGVKDKVVRREICAMVTK 458 Query: 137 GTLTE-DQLLSPTDSNYLMAVA---RIRTE-------WAIAWIDISTGIFKISTSNHDR- 184 GTLTE + LL+ D +YL +VA + +E + +D+ST F + D Sbjct: 459 GTLTEGESLLANPDPSYLFSVAESYQCGSEKDQDGHTIGVCIVDVSTSKFIVGQFQDDAE 518 Query: 185 ---LISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQ--PNV-FFDHSISESRIA 238 L S + I P EII K LS K+L + + P++ F+D + I Sbjct: 519 RHGLCSILSEIRPAEIIKPAKMLSPETEKALKSNTRDPLINNLLPSMEFWDAEKTIHEIK 578 Query: 239 DYYNITTVDTFGSFSQV----------------EKTAAAAAIS----YIKKTQMVNK--P 276 YY ++DT G+ +Q+ +KT A +A+ Y++++ + K P Sbjct: 579 QYY--CSLDTPGAGAQISSAYLPELLSELIEAGDKTYALSALGGSLFYLRQSLLDEKLLP 636 Query: 277 TIGYPER-------EDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSITGAGGR 328 + ER I+ + +D+AA NLEIL +G +L +++ +TG G R Sbjct: 637 CAEF-ERLTCSGLTNPIRKHMILDAAALENLEILENARNGGLSGTLYAQLNHCVTGFGKR 695 Query: 329 LFAERIASPLTDSTKINTRLDSINFF--IQNPILINPIQKILKSSPDVPRSLSRL----- 381 L IA PL + I R +I F + I +K L PD+ R L+RL Sbjct: 696 LLKRWIARPLYERQAILQRQSAIATFKGSGHECAIQ-FRKDLSRLPDMERLLARLFSSCD 754 Query: 382 KIGRGEPKDIAVIRDGIR-----------------SGINILNLFLKNDLPEELRGAVEKL 424 K GR K + + D + + +++ D L + Sbjct: 755 KNGRSS-KSVVLYEDASKRLLHQFTAALRGCQQMFQACSSISMLTSTDGSSLLNDLLSLG 813 Query: 425 KKLPQSLEKTLSSMLSD-----DLPTFKRDGGFL-RDGADASLDETRSLRDQSKRIIASL 478 K LP +SS+L D R+G + +G D D ++ I +SL Sbjct: 814 KGLPH-----VSSILDHFRDAFDWSEADRNGRIIPHEGCDPQYDAACIAIEE---IESSL 865 Query: 479 QLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRF 535 Q E+ K+ ++K Y +EV+ + + + E + T R+ Sbjct: 866 QKYLKEQRKLLSDSSVKYVDVGKDTYLLEVSENLRGSVPHNYELQS------TKKGFYRY 919 Query: 536 TTLELIDLENRITNATNSALLIELESFEILSNAI---IEQSESLDNASQVIAIIDISIAL 592 T E+ +L + ++ A E + IL N I +E V+A +D+ I+L Sbjct: 920 WTPEVKELISELSKAEAEK---EAKLKCILQNLIQLFVEHHSKWRQLVSVVAELDVLISL 976 Query: 593 AILAK--EQNYCRPII------DNSTNFIVKDGRHPIVEKTLKQQS--SKPFIANDCDLS 642 AI + E C PII D++ ++ HP TL+ S S F+ ND + Sbjct: 977 AIASDFFEGPTCCPIIKESYGPDDTPTLHARNLGHP----TLRSDSLGSGSFVPNDIKMG 1032 Query: 643 CPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGS 702 P + + +LTGPNMGGKST LRQ L +I+AQ+G+ VPA + +VD++F R+G+ Sbjct: 1033 GPGNAS---FIVLTGPNMGGKSTLLRQVCLTIILAQIGANVPAESFELSLVDRMFVRMGA 1089 Query: 703 ADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETN 762 D++ +G+STF+VE++ETAS+L+ AT S V LDE+GRGT+T DG +IA + +EYL Sbjct: 1090 RDHIMAGQSTFLVELMETASVLSSATKNSLVALDELGRGTSTSDGQAIAASVLEYLVHHV 1149 Query: 763 RCRGLLATHFHELTDLSKSLK-RFHNATLQVSDSNEG---IIFLHKVIPGIADHSYGIQV 818 +C GL +TH+H L +K K + ++S G + FL+K+ PG SYG+ V Sbjct: 1150 QCLGLFSTHYHRLAAENKDSKVSLCHMACEISKGEGGLEEVTFLYKLTPGSCPKSYGVNV 1209 Query: 819 GKLAGLPNTVISRAYDILKTFEKLY 843 +LAG+P +V+ RA + FE Y Sbjct: 1210 ARLAGIPASVLQRANEKSSDFEASY 1234 >gi|51091506|dbj|BAD36244.1| putative mismatch binding protein Mus3 [Oryza sativa Japonica Group] gi|51091562|dbj|BAD36299.1| putative mismatch binding protein Mus3 [Oryza sativa Japonica Group] Length = 1253 Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 278/925 (30%), Positives = 438/925 (47%), Gaps = 138/925 (14%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 L S T RQ+ E KS + D ++F++MG FYELF DA + ++ L + +++ D Sbjct: 305 LNSLTGGQRQWWEFKSQHMDKVLFFKMGKFYELFEMDAHVGAKELDL------QYMKGDK 358 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESP----LEAKKRGNK-SLVRRNVVRLVTP 136 P CG P ++KL K G+R+ + EQ E+P L K+ G K +VRR + +VT Sbjct: 359 PHCGFPEKNFELNLEKLAKKGYRVLVIEQTETPEQLDLRRKETGVKDKVVRREICAMVTK 418 Query: 137 GTLTEDQ-LLSPTDSNYLMAVA---RIRTE-------WAIAWIDISTGIFKISTSNHDR- 184 GTLTE + LL+ D +YL +VA + +E + +D+ST F + D Sbjct: 419 GTLTEGESLLANPDPSYLFSVAESYQCGSEKDQDGHTIGVCIVDVSTSKFIVGQFQDDAE 478 Query: 185 ---LISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQ--PNV-FFDHSISESRIA 238 L S + I P EII K LS K+L + + P++ F+D + I Sbjct: 479 RHGLCSILSEIRPAEIIKPAKMLSPETEKALKSNTRDPLINNLLPSMEFWDAEKTIHEIK 538 Query: 239 DYYNITTVDTFGSFSQV----------------EKTAAAAAIS----YIKKTQMVNK--P 276 YY ++DT G+ +Q+ +KT A +A+ Y++++ + K P Sbjct: 539 QYY--CSLDTPGAGAQISSAYLPELLSELIEAGDKTYALSALGGSLFYLRQSLLDEKLLP 596 Query: 277 TIGYPER-------EDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSITGAGGR 328 + ER I+ + +D+AA NLEIL +G +L +++ +TG G R Sbjct: 597 CAEF-ERLTCSGLTNPIRKHMILDAAALENLEILENARNGGLSGTLYAQLNHCVTGFGKR 655 Query: 329 LFAERIASPLTDSTKINTRLDSINFF--IQNPILINPIQKILKSSPDVPRSLSRL----- 381 L IA PL + I R +I F + I +K L PD+ R L+RL Sbjct: 656 LLKRWIARPLYERQAILQRQSAIATFKGSGHECAIQ-FRKDLSRLPDMERLLARLFSSCD 714 Query: 382 KIGRGEPKDIAVIRDGIR-----------------SGINILNLFLKNDLPEELRGAVEKL 424 K GR K + + D + + +++ D L + Sbjct: 715 KNGRSS-KSVVLYEDASKRLLHQFTAALRGCQQMFQACSSISMLTSTDGSSLLNDLLSLG 773 Query: 425 KKLPQSLEKTLSSMLSD-----DLPTFKRDGGFL-RDGADASLDETRSLRDQSKRIIASL 478 K LP +SS+L D R+G + +G D D ++ I +SL Sbjct: 774 KGLPH-----VSSILDHFRDAFDWSEADRNGRIIPHEGCDPQYDAACIAIEE---IESSL 825 Query: 479 QLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRF 535 Q E+ K+ ++K Y +EV+ + + + E + T R+ Sbjct: 826 QKYLKEQRKLLSDSSVKYVDVGKDTYLLEVSENLRGSVPHNYELQS------TKKGFYRY 879 Query: 536 TTLELIDLENRITNATNSALLIELESFEILSNAI---IEQSESLDNASQVIAIIDISIAL 592 T E+ +L + ++ A E + IL N I +E V+A +D+ I+L Sbjct: 880 WTPEVKELISELSKAEAEK---EAKLKCILQNLIQLFVEHHSKWRQLVSVVAELDVLISL 936 Query: 593 AILAK--EQNYCRPII------DNSTNFIVKDGRHPIVEKTLKQQS--SKPFIANDCDLS 642 AI + E C PII D++ ++ HP TL+ S S F+ ND + Sbjct: 937 AIASDFFEGPTCCPIIKESYGPDDTPTLHARNLGHP----TLRSDSLGSGSFVPNDIKMG 992 Query: 643 CPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGS 702 P + + +LTGPNMGGKST LRQ L +I+AQ+G+ VPA + +VD++F R+G+ Sbjct: 993 GPGNAS---FIVLTGPNMGGKSTLLRQVCLTIILAQIGANVPAESFELSLVDRMFVRMGA 1049 Query: 703 ADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETN 762 D++ +G+STF+VE++ETAS+L+ AT S V LDE+GRGT+T DG +IA + +EYL Sbjct: 1050 RDHIMAGQSTFLVELMETASVLSSATKNSLVALDELGRGTSTSDGQAIAASVLEYLVHHV 1109 Query: 763 RCRGLLATHFHELTDLSKSLK-RFHNATLQVSDSNEG---IIFLHKVIPGIADHSYGIQV 818 +C GL +TH+H L +K K + ++S G + FL+K+ PG SYG+ V Sbjct: 1110 QCLGLFSTHYHRLAAENKDSKVSLCHMACEISKGEGGLEEVTFLYKLTPGSCPKSYGVNV 1169 Query: 819 GKLAGLPNTVISRAYDILKTFEKLY 843 +LAG+P +V+ RA + FE Y Sbjct: 1170 ARLAGIPASVLQRANEKSSDFEASY 1194 >gi|241767760|ref|ZP_04765368.1| DNA mismatch repair protein MutS domain protein [Acidovorax delafieldii 2AN] gi|241361224|gb|EER57828.1| DNA mismatch repair protein MutS domain protein [Acidovorax delafieldii 2AN] Length = 582 Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 168/493 (34%), Positives = 264/493 (53%), Gaps = 16/493 (3%) Query: 364 IQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN-DLPEELRGAVE 422 +++ LK DV R +R + + P+++ + ++ L +N PE + Sbjct: 10 LREQLKGVSDVERITARTALRQVRPRELVALGKTLQKA----ELLAQNGQAPEPYLAQIF 65 Query: 423 KLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 + P+ + L + ++ RDGG + G DA LDE R ++ + L+ + Sbjct: 66 SHLQPPEGCTELLRRAIDEEPAALVRDGGVIASGFDAELDELRGIQSNCDAFLLDLETRE 125 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 T I NL+++ N G++IEVT S + D + RQT+ N RF T EL Sbjct: 126 KARTGIPNLRVQFNKVHGFYIEVTGSHLDKVPGD------YRRRQTLKNAERFITPELKA 179 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 E++ +A AL E +E + + + L + +A +D LA + +C Sbjct: 180 FEDKALSANERALAREKWLYEQVLDQLQPHIPRLTRLAHALATLDGLCTLAERSLTLGWC 239 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P N ++ GRHP+VE L + SS FIAN L+ + ++ ++TGPNMGG Sbjct: 240 APQFVNEPCIEIEAGRHPVVEARLAETSSGAFIANHTRLNA-----NTRMQVITGPNMGG 294 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ ALIV++A MGS+VPA+ +G +D + +R+G+AD+LA+ +STFM+EM+E A Sbjct: 295 KSTYMRQVALIVLLASMGSHVPAASCRLGPIDAIHTRIGAADDLANAQSTFMLEMVEAAQ 354 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL+ AT S V++DEIGRGT+T DGL++A +LH+ R L ATH+ ELT+L Sbjct: 355 ILHAATPHSLVLMDEIGRGTSTFDGLALASGIATHLHDKTRAFTLFATHYFELTELPAKA 414 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + N + ++S I+FLH++ PG A SYGIQV KLAG+P V+ A L E+ Sbjct: 415 RHAINMHVSAAESGSDIVFLHEIQPGPASRSYGIQVAKLAGMPAPVLHHARHALAALEER 474 Query: 843 YHHNQKDMRLYYP 855 + + L+ P Sbjct: 475 ADEGELQVDLFAP 487 >gi|196016559|ref|XP_002118131.1| hypothetical protein TRIADDRAFT_33687 [Trichoplax adhaerens] gi|190579257|gb|EDV19356.1| hypothetical protein TRIADDRAFT_33687 [Trichoplax adhaerens] Length = 984 Score = 291 bits (745), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 268/944 (28%), Positives = 426/944 (45%), Gaps = 137/944 (14%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 LK TP+MRQ+ +IKS N DS++ +++G FYE++ DAL+ LG+ L R + Sbjct: 43 LKEQTPLMRQWWQIKSENFDSVLCFKVGKFYEMYHMDALIGISELGLILM-RVTQSSTAV 101 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKS--------LVRRNVVRL 133 CG P + Y + L + G+R+ EQ E+P ++R S +V R V Sbjct: 102 AHCGFPEIAFSRYAETLAQRGYRVVRVEQTETPQMMEERVKSSTRPTKFDKVVNREVCGR 161 Query: 134 VTPGTLT--EDQLLSPTDSN-YLMAV-ARIRTEWAI-------AWIDISTGIFKISTSNH 182 +T T T P N +L+A+ R R + A+ ++D + G F + Sbjct: 162 ITKATRTFSVQNYEDPNSENAFLLAIIERERDDLAVGHSLLGVCFLDTTIGKFHLGQFTD 221 Query: 183 DRLISD----IMRIDPREIIFSEKELS----HAEYKSLFETLGNVAVAQPNVFFDHSISE 234 DR S + P +I++ ++S H L + + A+A + F+D + + Sbjct: 222 DRQCSRLRTLVTHFQPVQILYERGKVSSKLQHIFQHDLLSAMKD-ALAPGSEFWDSNNTL 280 Query: 235 SRIAD--YY--------------------NITTVDTFGSFSQ----VEKTAAAAAISYIK 268 +++ Y+ N D FG ++ + +A A+I Y+ Sbjct: 281 KILSEKSYFTKDGNEADDASLDTWPETLRNFVEGDGFGITAKEDYDLTVSALGASIWYLT 340 Query: 269 KT------------QMVNKPTIGYPEREDIQSTL-----FIDSAARSNLEILRTLSGSR- 310 K + P P+R + L +D+ NL+IL T S S Sbjct: 341 KCFLDYDLMSLKNFEEYVPPDAPSPDRLVAGNILKHKHMILDAVTLINLDILPTASDSGL 400 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 +LL+ +DY +T G RLF + +PL D IN RLDS+ + ++ L+ Sbjct: 401 RGTLLEKLDYCVTPTGKRLFKHWLCTPLCDPVLINDRLDSVEDLMAMSSAVSDCLNTLRK 460 Query: 371 SPDVPRSLSRLK-IGRGEP-----------KDIAVIRDGIRSGINILNLFLKNDLP--EE 416 PD+ + ++++ +G +D A + I I+++N F K L E Sbjct: 461 IPDLEKLINKIHSLGSSRRSNHPDNKAIFFEDTAYSKRKILEFISVINGF-KTLLQSIES 519 Query: 417 LRGAVEKLK--------------------KLPQSLEKTLSSMLSDDLPTFKRDGGFL-RD 455 L+ +K+K K PQ LE + D K+DG + + Sbjct: 520 LQTNRDKMKSRLLLQIITYTGENFSGIKGKFPQLLEYIQFFQKAFDHEQAKKDGKIIPKP 579 Query: 456 GADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSAS-VLK 514 GAD D+ + K+ + + +N++ Y IEV S S Sbjct: 580 GADPEYDDAIQSIAEIKQELEHYLDSQKKRLNCRNIRYWGQGRNRYQIEVPESVLSRYTP 639 Query: 515 KDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSE 574 D E + R RF T ++++L +TNA ++ + E E Sbjct: 640 NDYELRSR------KKGFKRFWTGDILNLIESLTNAEERRDAALKDAMRRIFLKFDEYYE 693 Query: 575 SLDNASQVIAIID--ISIALAILAKEQNYCRPII----DNSTNFI-VKDGRHPIVEKTLK 627 + + A Q +A++D S+A + E CRP + +N ++ +++GRHP + +T Sbjct: 694 NWNVAIQCVAVLDALCSLASYSSSIESESCRPKVAFAGNNDEPYVEIRNGRHPCISQTF- 752 Query: 628 QQSSKPFIANDCDLSCPNDKN---SGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684 S FI ND + + N +G L+TGPNMGGKST +RQ L+ IMAQ+G YVP Sbjct: 753 --SGGDFIPNDTIIGIKDSNNCNETGNSVLVTGPNMGGKSTLMRQVGLLAIMAQLGCYVP 810 Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744 A+ + VD+LF+R+G++D + SG STF VE+ ET +IL AT S V+LDE+GRGTAT Sbjct: 811 ATSCCLSPVDRLFTRLGASDRIMSGESTFFVELSETTTILRHATKHSLVLLDELGRGTAT 870 Query: 745 LDGLSIAWATIEYLHETNRCRGLLATHFHELTD--LSKSLKRFHNATLQVSD------SN 796 DG +IA A + +L +CR L +TH+H L + +S R + V + S Sbjct: 871 YDGTAIAGAVVSHLAHEIKCRTLFSTHYHSLVEDFVSDPNVRLGHMACMVENEDDDDPSK 930 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 E I FL+K + G SYG +LAGLP+ VI +A K FE Sbjct: 931 ETITFLYKFVAGACPKSYGFNAARLAGLPDNVIVKAKRKAKEFE 974 >gi|224091709|ref|XP_002190416.1| PREDICTED: similar to mutS homolog 3 [Taeniopygia guttata] Length = 1092 Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 251/926 (27%), Positives = 440/926 (47%), Gaps = 145/926 (15%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ Q+IE+K D+++ G Y F DA +A++ L I HL + Sbjct: 185 TPLELQFIEMKKKYKDAVLCVECGYKYRFFGQDAEIAAKELNIYC-----HLDHNFMTAS 239 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESP-LEAKKRGNKSLVRRNVVRLVTPGTLT-ED- 142 +P H ++++L+ GH++ + +Q+E+ L+A SL R + L T TL ED Sbjct: 240 IPSHRLFVHVRRLVAKGHKVGVIKQMETAALKAAGENKSSLFSRKLTALYTKSTLIGEDV 299 Query: 143 -------------QLLSPTDSNYLMAVA------RIRTEWAIAWIDISTGIFKIS----- 178 ++ + NYL+ + + R + DI TGI I Sbjct: 300 NPLLKLDDAVDVEEVTADVPDNYLLCICENGDSLKDRKKG-----DIVTGIVAIQPTTGE 354 Query: 179 --------TSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA-------- 222 ++ L S ++R+ P EII + +E L ++ ++ + Sbjct: 355 VIFDSFRDCASRSELESRVLRLQPVEIILPSRLSDQSE--KLIHSITSMRLQDDRIRIER 412 Query: 223 QPNVFFDHSISESRIADYYNITTVDTFG--------SFSQVEKTAAAAAISYIKK---TQ 271 N+ F++S + ++ D+Y T G S + + AA I+Y+K+ + Sbjct: 413 MENLNFEYSHAFQKVTDFYAKEVPGTAGPQNLSVILSLDKPVICSLAAVITYLKEFNLEK 472 Query: 272 MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSITGAGGRLF 330 M+ P+ + + + ++ NLEIL+ + + + SLL +D++ T G R Sbjct: 473 MLYNPS-NFKQLSSEAEYMTLNGTTMKNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRRL 531 Query: 331 AERIASPLTDSTKINTRLDSIN-FFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPK 389 + + PL ++IN RLD+++ + + IQ +L PD+ R L + + + Sbjct: 532 KKWVTQPLLKLSEINARLDAVSEILLSESSVFGQIQNLLCKLPDLERGLCSVFHKKCSTQ 591 Query: 390 D------------------IAVIRDGIRSGINILNLFLKN---DLPEELRGAVEKLKKLP 428 + + VI+ +RS + LKN ++PE L + LK L Sbjct: 592 EFFLIVSTLSRLDLEIQAFVPVIQSHVRSPL------LKNALLEIPELLSPVKQYLKILN 645 Query: 429 QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAE-ETK 487 + KT D FK D D R +++ + +++ +QL + + Sbjct: 646 EEAAKT-----GDKTQLFK-------DLTD--FPAIRKKKEEIQDVLSKIQLHLPDIRKQ 691 Query: 488 IKNLKIKHNNNLG--YFIEVTSSSASVLKKD--LESKDRFIHRQTMSNLTRFTTLELIDL 543 IKN ++ G + IEV +S S + D + S R + R S L L L Sbjct: 692 IKNPSAEYVAVSGQEFLIEVKNSHKSSVPSDWVMVSSTRAVSR-FHSPLVTENYRVLQRL 750 Query: 544 ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCR 603 ++ A ++ L L+ F E + A +A +D +LA +AK+ +YCR Sbjct: 751 REQLGLACSAEWLCFLDHFS-------EHYHPVSKAICHLATVDCLFSLAQVAKQGDYCR 803 Query: 604 PII-DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 P + DN I+K+GRHP+++ L +Q ++ N LS + ++ ++TGPNMGG Sbjct: 804 PTVQDNRREIIIKNGRHPVIDVLLGEQDQ--YVPNTTSLS----GDGERVMIITGPNMGG 857 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KS++++Q ALI +MAQ+GS+VPA A IG+VD +F+R+G+ADN+ GRSTFM E+ +TA Sbjct: 858 KSSYIKQVALITVMAQIGSFVPAEEATIGVVDGIFTRMGAADNIYKGRSTFMEELTDTAE 917 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK-- 780 I+ +AT++S VILDE+GRGT+T DG++IA+AT+E+ + L TH+ + +L + Sbjct: 918 IIRKATSRSLVILDELGRGTSTHDGIAIAYATLEHFIRDVQALTLFVTHYPSVCELQQRY 977 Query: 781 --SLKRFHNATL-----------QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNT 827 ++ +H A L Q+ ++ E I FL+++ G++ SYG+ V KLA +P Sbjct: 978 PHAVGNYHMAFLLSEEDAGQHTGQLEENPEFITFLYQITKGVSARSYGLNVAKLADIPEE 1037 Query: 828 VISRAYDILKTFEKLYHHNQKDMRLY 853 ++ A K E++ + ++ M+ + Sbjct: 1038 ILKNAAHKSKELERIVNMKRRKMKSF 1063 >gi|294892329|ref|XP_002774009.1| DNA mismatch repair protein mutS, putative [Perkinsus marinus ATCC 50983] gi|239879213|gb|EER05825.1| DNA mismatch repair protein mutS, putative [Perkinsus marinus ATCC 50983] Length = 943 Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 244/896 (27%), Positives = 407/896 (45%), Gaps = 114/896 (12%) Query: 17 DLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKH 76 DL E TPM+ QY E+K+ + D + +++G FYE+F+ DA+ A + K Sbjct: 60 DLREG--HCTPMLLQYWEVKAKHFDEITLFKVGKFYEIFYYDAVFAQAACNLRWMGNNKK 117 Query: 77 LGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKK-RGNKS--LVRRNVVRL 133 P G P + Y L+ G R + EQ+E E K +G KS +V+R + Sbjct: 118 -----PHVGFPEVSLYEYSSVLVNAGFRTVVVEQVERVGEMNKGQGRKSDAVVKREACQA 172 Query: 134 VTPGTLTEDQLL----SPTDSNYLMAVA-----------RIRTEWAIAWIDISTGIFKIS 178 T GTLT + +L SP NYLMA+ R + +D +T FK Sbjct: 173 HTAGTLTHEVMLKNSPSPAQPNYLMALWFSDGCTHPGALGDRLSFGCCVVDCTTSTFKYG 232 Query: 179 --TSNHDR--LISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISE 234 DR L + ++ + PRE++ +K + A ++ L + L +D + Sbjct: 233 WFEDKPDRQLLRTILITLQPRELLADKKSIPTAVHR-LLQGLAVPPTVTQWHHWDPNTEH 291 Query: 235 SRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDI------QS 288 R + V + A A ++Y+++T M+ + + E + S Sbjct: 292 GRQDESDEPLPV----------QKACGAVLAYLRQT-MLYEAVTSFATWEKLDTSNAGSS 340 Query: 289 TLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRL 348 L +D+ A LE+LR G E SLL +D+++T G RL + + PL T + RL Sbjct: 341 GLVLDANALEQLEVLRNTDGKLEGSLLNQLDHTVTPFGKRLLRQWVCCPLRAKTDTDRRL 400 Query: 349 DSINFFIQNPILINPIQKILKSSPDVPR----------SLSRLKIGRGEPKD-------- 390 D +++ ++ L+ ++ ++ PD+ R L R + GE + Sbjct: 401 DVVDWLLERTELVADLRSRMRKLPDIERRQNRVFALGLQLERKAVLYGEVESSRIAQFME 460 Query: 391 -IAVIRDG------------IRSGINILNLFLKNDLPEE----LRGAVEKLKKLPQSLEK 433 +A +++ +R G L L +P E + G +E+L Q E Sbjct: 461 LLAALKEADRCLAMKFSWQQVREGDGALPALLDELIPMEELGYVDGILEELGSRVQGSES 520 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 S P + D A + + +S + + + LK + + K + + Sbjct: 521 DGYSAAPGCCPAY--------DEAQSKIASIKSDLQEELKTVCHEHLKGCKPQEAKFVSV 572 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 K+ Y IEV A +DLE+ + T R T E+ ++ + +AT Sbjct: 573 KYR----YEIEVPERCAP---RDLEAHGLEV-SSTRKGFVRLLTQEIRNMTEEL-DATEE 623 Query: 554 ALLIELESFEI-LSNAIIEQSESLDNASQVIAIIDISIALAILAK--EQNYCRPIIDNST 610 + L F L + + L + Q +A +D ++L+ ++ + CRP I + T Sbjct: 624 RMKDCLYPFMAQLFKDFHKHTIRLQDMVQRLATLDCLLSLSEASRPGAGSMCRPQILDPT 683 Query: 611 NFIVK-----DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKST 665 F DGRHP+ E L + S + F+ N ++ S L+TGPNMGGKST Sbjct: 684 EFTAPVFDLVDGRHPVQEAALAR-SGREFVPNSVEMGI---NGSPTTLLVTGPNMGGKST 739 Query: 666 FLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILN 725 LR +A VI+AQ+G VPAS + VD++F+R+G+ D++ +STF++E+ ET ++L Sbjct: 740 VLRLSATAVIIAQLGCRVPASSFKLTPVDRIFTRIGARDSILENKSTFLIELEETGAVLQ 799 Query: 726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLS--KSLK 783 AT S ++DE+GRGT+T DG +IA A +E + E+ CR L ATH+H+L + + Sbjct: 800 HATKHSLAVIDELGRGTSTFDGAAIAHAVLERISESIGCRTLFATHYHQLAEDEGLHNTA 859 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF 839 +H A L V+ + + FL+K G S+ + V K+AGLP ++ A ++ F Sbjct: 860 LYHQACL-VNPATREVTFLYKFTKGRCPQSHAMHVAKIAGLPEVIVEAAREMSTVF 914 >gi|291394958|ref|XP_002713953.1| PREDICTED: mutS homolog 3 [Oryctolagus cuniculus] Length = 1057 Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 246/926 (26%), Positives = 449/926 (48%), Gaps = 121/926 (13%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ Q++E+K + D+++ G Y F +DA +A+R L I HL + Sbjct: 156 TPLELQFLEVKRQHQDAVLCVECGYKYRFFGEDAEIAARELNIYC-----HLDHNFLTAS 210 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLVTP-------- 136 +P H ++++L+ G+++ + +Q E + L+A SL R + L T Sbjct: 211 IPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAVGDNKSSLFSRKLTALYTKSTLIGEDV 270 Query: 137 -------GTLTEDQLLSPTDSNYLMAVARIRTEW----------AIAWIDISTG-----I 174 G + D++++ SNYL+ + + + + + +TG Sbjct: 271 NPLIKLDGAMNVDEIMTDASSNYLLCICENKEKAKDKKKGSIFIGVVGVQPATGEVVYDS 330 Query: 175 FKISTSNHDRLISDIMRIDPREIIF-------SEKELSHAEYKSLFETLGNVAVAQPNVF 227 F+ S S + L + I + P E++ +E+ + A S+ + V + +V Sbjct: 331 FQDSASRSE-LETRISALQPVELLLPSHLSEQTERLIHRATAVSVRDDRMRVERME-DVH 388 Query: 228 FDHSISESRIADYYNITTVDTFGSFSQ-------VEK---TAAAAAISYIKK---TQMVN 274 F++S + + ++Y +T G SQ +EK + AA I Y+K+ +M++ Sbjct: 389 FEYSHAFQMVTEFY--AKDETQGKCSQSLSGILNLEKPVVCSLAAVIRYLKEFNLEKMLS 446 Query: 275 KPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSITGAGGRLFAER 333 KP + + + I+ NLEIL+ + + + SL +D++ T G R + Sbjct: 447 KPE-NFKQLSSEVEFMTINGTTLRNLEILQNQTDMKTKGSLFWVLDHTKTSFGRRKLKKW 505 Query: 334 IASPLTDSTKINTRLDSINFFIQN-PILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIA 392 + PL IN RLD+++ + + + I+ L PD+ R L + + ++ Sbjct: 506 VTQPLLKLRDINARLDAVSEVLHSESSVFGQIENHLNKLPDIERGLCSIYHKKCSTQEFF 565 Query: 393 VI-------RDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPT 445 +I + ++ + +N + +DL LR + +L + E+ L +L++ Sbjct: 566 LIVKTLCHLKSEFQALVPAVNSQVHSDL---LRTCALDIPELLRPAERYLQ-VLNEQAAK 621 Query: 446 FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI-KNLKIKHNNNLG--YF 502 +D +D L + R +++ + + +Q+ E KI KN ++ G + Sbjct: 622 IGDKTELFKDLSDFPLIKKR--KNEIQEVTEKIQVHLQEIRKILKNPSAQYVTVSGQEFM 679 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID-------LENRITNATNSAL 555 IE+ +SS S + D +I + ++RF + +++ L ++ + Sbjct: 680 IEIKNSSLSCIPAD------WIKVGSTKAVSRFHSPFIVENYRRLNQLREQLALDCGAEW 733 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 L LE+F +SL A +A +D +L +AK+ NYCRP + I+K Sbjct: 734 LGFLETFS-------GHHDSLCKAVHHLATVDCIFSLTKVAKQGNYCRPALQEERKIIIK 786 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 +GRHP+++ L +Q ++ N +LS ++ ++ ++TGPNMGGKS++++Q ALI + Sbjct: 787 NGRHPVIDVLLGEQDQ--YVPNSTNLS----GDAERVMIITGPNMGGKSSYIKQVALIAV 840 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+GSYVPA A +GIVD +F+R+G+ADN+ GRSTFM E+ +TA I+ QAT QS VIL Sbjct: 841 MAQIGSYVPAEEATLGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRQATPQSLVIL 900 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDL----SKSLKRFHNATLQ 791 DE+GRGT+T DG++IA+AT+EY + L TH+ + +L S+ + +H L Sbjct: 901 DELGRGTSTHDGIAIAYATLEYFIRDVQSLTLFVTHYPPVCELEKHYSQQVGNYHMGFLV 960 Query: 792 VSDSNEG-----------IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 D ++ + FL+++ G+A SYG+ V KLA +P V+ +A + E Sbjct: 961 TEDESKQDPGGEEPVPDFVTFLYQITQGVAARSYGLNVAKLADVPGEVLRKAARKSQELE 1020 Query: 841 KLYHHNQKDMRLYYPEIQTKESKNNL 866 L + +K ++ Y+ ++ T S +L Sbjct: 1021 GLVNAKRKRLK-YFTKVWTIHSAEDL 1045 >gi|326498831|dbj|BAK02401.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 1331 Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 268/923 (29%), Positives = 430/923 (46%), Gaps = 131/923 (14%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 LK+ T RQ+ E KS + D ++F++MG FYEL+ DA + ++ L + +++ D Sbjct: 380 LKNLTGGQRQWWEFKSQHMDKVLFFKMGKFYELYEMDAHVGTKELNL------QYMKGDQ 433 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESP----LEAKKRGNK-SLVRRNVVRLVTP 136 P CG P ++KL + G+R+ + EQ E+P L ++ G K +VRR + +VT Sbjct: 434 PHCGFPEKNLAVNLEKLAQKGYRVLVVEQTETPDQLDLRRRETGTKDKVVRREICAMVTK 493 Query: 137 GTLTEDQ-LLSPTDSNYLMAV----------ARIRTEWAIAWIDISTGIFKISTSNHDR- 184 GTLTE + LL+ D +Y+++V ++ + ID+ST F I D Sbjct: 494 GTLTEGESLLANPDPSYILSVVESYPCSSTKSQDGHTIGVCIIDVSTSKFIIGQFQDDPE 553 Query: 185 ---LISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQ--PNV-FFDHSISESRIA 238 L S + I P EII K LS ++L + + P+ F+D + I Sbjct: 554 RHVLCSILSEIRPVEIIKPAKMLSAETERALKNNTRDPLINGLLPSTEFWDAEKTIHVIE 613 Query: 239 DYY----NIT----TV----------DTFGSFSQVEKTAAA-----AAISYIKKTQMVNK 275 YY N+T TV D G + A A ++ Y+K+ + +K Sbjct: 614 QYYSSSNNLTMSRNTVGVQNNVGCLPDLLGELIEAGDRAYALSALGGSLFYLKQILLDDK 673 Query: 276 --------PTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGG 327 P ++Q + +D+AA NLEIL +G +L + +++ +TG G Sbjct: 674 LLPCAKFEPLTCSGLINNMQKHMILDAAALENLEILENATGGLSGTLYEQLNHCVTGFGK 733 Query: 328 RLFAERIASPLTDSTKINTRLDSINFF--IQNPILINPIQKILKSSPDVPRSLSRL--KI 383 RL I PL D I R +I F + + + +K L PD+ R L+ L + Sbjct: 734 RLLKRWIVRPLYDREAILQRQGAIAIFKGVGHECAMQ-FRKDLCRLPDMERLLAHLFSRC 792 Query: 384 GR-GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP--QSLEKTLSSMLS 440 G G K + + D + +L F LRG + + ++L T S L Sbjct: 793 GENGRSKSVILYEDTAK---RLLQQFTA-----ALRGCQQMFQACSSIRALTGTEGSSLL 844 Query: 441 DDL-------PTFKRDGGFLRD-----------------GADASLDETRSLRDQSKRIIA 476 +DL P + RD G D D T ++ I + Sbjct: 845 NDLLSPGKGLPDVSSILDYFRDAFDWSEADHNGRIIPLEGCDPEYDATSCAIEE---IES 901 Query: 477 SLQLKYAEETKI-KNLKIKHNNNLG---YFIEVTSSSASVLKKDLESKDRFIHRQTMSNL 532 +LQ E+ K+ ++ +K+ N +G Y IEV+ S + D E + T + Sbjct: 902 NLQDYLKEQRKLLRDSSVKYVN-VGKDTYLIEVSDSLRGSVPSDYELQ------STKKGV 954 Query: 533 TRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIAL 592 R+ T E+ L + ++ I + L + IE V A ID+ ++L Sbjct: 955 CRYWTPEVKQLISELSKVATDKESILKGILQKLIHLFIEHHSKWRRLVSVAAEIDVLVSL 1014 Query: 593 AILAK--EQNYCRPII------DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 AI E C P I D++ F ++ HPI+ + S F+ N+ ++ P Sbjct: 1015 AIAGDYFEGPTCCPTIRELCGPDDTPTFHARNLGHPIIRSDSLGKGS--FVPNNINMGGP 1072 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 + + +LTGPNMGGKST LRQ L +I+AQ+G+ VPA + +VD++F R+G+ D Sbjct: 1073 GNAS---FIILTGPNMGGKSTLLRQVCLTIILAQIGANVPAENLELSLVDRIFVRMGARD 1129 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 ++ +G+STF+VE++ETAS+L+ AT S V LDE+GRGT+T DG +IA + ++YL +C Sbjct: 1130 HIMAGKSTFLVELMETASVLSSATKNSLVALDELGRGTSTSDGQAIAASVLDYLVHRVQC 1189 Query: 765 RGLLATHFHELTDLSKSLK-RFHNATLQVSDSNEG---IIFLHKVIPGIADHSYGIQVGK 820 GL +TH+H+L + K + QV G + FL+++ G SYG+ V + Sbjct: 1190 LGLFSTHYHKLAVEHEDGKVSLCHMACQVGTGEGGLEEVTFLYRLTAGSCPKSYGVNVAR 1249 Query: 821 LAGLPNTVISRAYDILKTFEKLY 843 LAG+P +V+ RA + FE Y Sbjct: 1250 LAGIPASVLQRANEKSIDFEANY 1272 >gi|289675309|ref|ZP_06496199.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. syringae FF5] Length = 357 Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 156/371 (42%), Positives = 227/371 (61%), Gaps = 16/371 (4%) Query: 448 RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTS 507 RDGG L+ G DA LD+ +SL + + + + L+ + T + NLK+ +N GYFIE+ S Sbjct: 3 RDGGVLKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLGNLKVGYNRVHGYFIELPS 62 Query: 508 SSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSN 567 A D +I RQT+ RF T EL + E++ +A + AL E +E L Sbjct: 63 KQAEQAPAD------YIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKMLYETLLE 116 Query: 568 AIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLK 627 +I L + + +A +D+ LA A + P ++ GRHP+VE+ L Sbjct: 117 DLIGHLAPLQDTAAALAELDVLSNLAERALNLDLNCPRFVAEPCMRIEQGRHPVVEQVL- 175 Query: 628 QQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASY 687 S PF+AND L +S ++ ++TGPNMGGKST++RQ ALIV++A +GS+VPA+ Sbjct: 176 ---STPFVANDLALD-----DSTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAAS 227 Query: 688 AHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDG 747 + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V++DE+GRGT+T DG Sbjct: 228 CELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFDG 287 Query: 748 LSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIP 807 LS+AWA E L + R L ATH+ ELT L +S N L ++ NE I+FLH+V+P Sbjct: 288 LSLAWAAAECLAQL-RAYTLFATHYFELTVLPESEPLVTNVHLNATEHNERIVFLHRVLP 346 Query: 808 GIADHSYGIQV 818 G A SYG+ V Sbjct: 347 GPASQSYGLAV 357 >gi|301117392|ref|XP_002906424.1| DNA mismatch repair protein Msh6, putative [Phytophthora infestans T30-4] gi|262107773|gb|EEY65825.1| DNA mismatch repair protein Msh6, putative [Phytophthora infestans T30-4] Length = 1245 Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 265/948 (27%), Positives = 424/948 (44%), Gaps = 148/948 (15%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E +K TP M Q+ E+KS N D+++F+++G FYELF DA + + L + K Sbjct: 284 EFVKKETPAMVQWWEVKSRNMDTVLFFKVGKFYELFHMDADIGFKELNLIYMK------G 337 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSL------VRRNVVRL 133 D G P + +L+ G+R+A EQ E+P K R N SL VRR V L Sbjct: 338 DKAHSGFPEIAYSKMSSQLVAKGYRVARVEQTETPDMLKVR-NSSLAKKAKVVRREVCSL 396 Query: 134 VTPGTLTEDQLLSPTDSN-----YLMAV------ARIRTEWAIAWIDISTGIFKIS---- 178 ++ GT T L +P S YL+A+ + + + +D STG F++S Sbjct: 397 LSIGTNTVSFLDAPISSQDQVSKYLLALKEAFDATQKSVRFGVCMVDCSTGAFQLSEFDD 456 Query: 179 TSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQP----NVFFDHS--I 232 T DRL + + EI+ +S + K + + A+ F+D S I Sbjct: 457 TEQRDRLKTMFAQFHVVEIVTERFNISD-DTKMVLKHAAPGAIRSSLRVGKEFWDASKTI 515 Query: 233 SESRIADYYN----ITTVDTFGSFSQVEKTAAAAAISYI--------------------- 267 E A Y+ V F +V K+ AIS + Sbjct: 516 DEIERAGYFKEHGWPGAVLYFLEMDKVVKSEGQLAISALGGCIWHLRRCLIDHELLSLCN 575 Query: 268 ----------KKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEIL-RTLSGSREQSLLK 316 + N+ + + E Q + +DS NLE+L + +GSR +L+ Sbjct: 576 FKRYKPSDEEAREARANREAMSAAKAELNQQYVVLDSQTIQNLEVLCNSFNGSRSGALID 635 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D ++T G R+F E + PL I RLD++ + L+ I++ L+ PD+ R Sbjct: 636 IMDKTVTSFGRRMFQEWVLKPLCKIGDIQERLDAVEELGTSGDLMMEIREFLRKLPDLER 695 Query: 377 SLSRLKI------GRGEPKDIAVIRDGIRSGINILNLFLK--NDLPEELRGAVEKLKKLP 428 LSR+ + P A++ + + + FL N E + +E +L Sbjct: 696 LLSRIHALGSAYRSKEHPDSRAIMYESQIYNVRKIKDFLAVLNGFDEAMNLTLELGPRLS 755 Query: 429 QSLEKTLSSML---------------------SDDLPTFKRD--------GGFL--RDGA 457 QS L S+L ++ L FKR G + + G Sbjct: 756 QSNSPILQSLLKRYAIEDGVQPDVNRGHFPDLTEKLEFFKRSFDQASAKKSGVIVPQAGI 815 Query: 458 DASLDETRSLRDQSKRIIASLQLKYAE--ETKIKNLKIKHNNNLG------YFIEVTSSS 509 D D + IA ++ + A+ + L+ + + G Y +EV S+ Sbjct: 816 DPEFDAACAE-------IAEVEAELADYLSEQRSALRCRQISYWGKKKEDRYQLEVPESA 868 Query: 510 ASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAI 569 S K+ E K R RF T + L R+ A + + + Sbjct: 869 LSKQPKEYELKSR------KKGYKRFHTPTIRALLKRLATAEEQKEEALKDQTRRIFHKF 922 Query: 570 IEQSESLDNASQVIAIIDISIALAILAKE-QNYCRPII------DNSTNFI-VKDGRHPI 621 E + A Q +A++D ++L +L+ + + Y +P + ++ FI +++G HP Sbjct: 923 DEDYKYWMKAVQCLAVLDCLVSLGLLSSQSEGYTKPEVVAASAANDGKPFIDIEEGVHPC 982 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 V T S FI ND L + G++ LL+GPNMGGKST LRQ ++ +MAQ+GS Sbjct: 983 VAATY---GSGDFIPNDAQLGI---QGKGQMVLLSGPNMGGKSTLLRQTCVLTLMAQIGS 1036 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA+ + VD++F+R+G++D + +G+ST VE+ ETA+ILN AT+ S VILDE+GRG Sbjct: 1037 FVPAAKCRLSPVDRIFTRIGASDRILAGQSTLFVELAETATILNHATSHSLVILDELGRG 1096 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRF---HNATLQVSDSNEG 798 T+T DG +IA++ +E+L +CR + ATH+H L + R H + ++ Sbjct: 1097 TSTFDGTAIAYSVVEHLLSDIQCRTMFATHYHSLVEEYVEDDRVSLGHMGCIVDPENERK 1156 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN 846 + FL+K+ G+ SYGI V LA LP+ VI A + FE+ N Sbjct: 1157 VTFLYKLEDGMCPKSYGINVAMLAKLPDEVIECAAKKSEQFERSLQAN 1204 >gi|94502272|ref|ZP_01308754.1| DNA mismatch repair protein mutS [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|94451165|gb|EAT14108.1| DNA mismatch repair protein mutS [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] Length = 479 Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 186/494 (37%), Positives = 298/494 (60%), Gaps = 42/494 (8%) Query: 404 ILNLFLKNDLP--EELRGAVEKLKKLPQSLEKTLS--SMLSDDLPTFKRDGGFLRDGADA 459 I NL LK+++ + + ++ + + +EK LS S S LP F ++ Sbjct: 3 IKNLLLKSEIYVLKNISYEIKNCENIYIHIEKILSMSSTNSIILPGFSKE---------- 52 Query: 460 SLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLES 519 LDE R + + SK I ++ + + T IK LKI NN G+FIEV S S K+ + S Sbjct: 53 -LDELRKIINSSKEYINNICKREKQNTGIKKLKILFNNIFGFFIEVKSIS----KEKVPS 107 Query: 520 KDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNA 579 +I +Q + N R+ T EL + E +I ++ IE F L + I + ++ L Sbjct: 108 --HWILKQKLFNCERYITDELKNHEIKILSSKEKIESIENNIFSKLIDYISKYTDILQFN 165 Query: 580 SQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDC 639 S++IA IDI ++ A A + NY P ++ S N +KDGRHP++EK + +K +I ND Sbjct: 166 SKIIAEIDIFMSFAKCAIDNNYICPELNESFNLYIKDGRHPVIEKQI-YSYNKSYIPNDI 224 Query: 640 DLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSR 699 + + N ++ ++TGPNM GKS LRQ ALI++MAQ+GSYVPASYA IGIVDK+FSR Sbjct: 225 MM----NNNDSQIIIITGPNMSGKSAILRQTALIILMAQIGSYVPASYASIGIVDKIFSR 280 Query: 700 VGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLH 759 VGS+DN++ G STFM EM ETASI+N +++SF+ILDEIGRGT+ DG+S+AW+ IE+L+ Sbjct: 281 VGSSDNISMGESTFMKEMNETASIINNLSDRSFLILDEIGRGTSNDDGISLAWSIIEFLN 340 Query: 760 ET-NRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADH-SYGIQ 817 + ++ + L ATH+HEL ++S + N ++ V ++ +IF K++ ++++ SYGI Sbjct: 341 KNIHKPKTLFATHYHELNNISNYINNIKNYSVSVKKIDDNLIFTRKLLNNVSNNGSYGIH 400 Query: 818 VGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKI 877 + K+AG+P+++I+RA ++L ++ + +++ Y + K NN+ I Sbjct: 401 IAKIAGMPDSIINRANELLSIIKRY----KINVKFVY---KKKYYINNI-------YSFI 446 Query: 878 KCLNLDEMSPLTAL 891 K L++D ++P+ A+ Sbjct: 447 KNLDIDNLTPIEAI 460 >gi|301626456|ref|XP_002942407.1| PREDICTED: DNA mismatch repair protein Msh3-like [Xenopus (Silurana) tropicalis] Length = 1016 Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 245/909 (26%), Positives = 439/909 (48%), Gaps = 109/909 (11%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ QY+EIKS + D+++ G Y F +DA +ASR L I H+ + Sbjct: 116 TPLEEQYMEIKSHHTDAILCVECGYKYRFFGEDAEIASRELNIYC-----HMDHNFMTAS 170 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESP-LEAKKRGNKSLVRRNVVRLVTPGTLTEDQ- 143 +P H ++++L+ G+++ + +Q E+ L+A SL R + L T TL + Sbjct: 171 IPAHRLFVHVRRLVAKGYKVGVVKQTETAALKAAGESKSSLFTRQLTALYTKSTLIGEDV 230 Query: 144 --------------LLSPTDSNYLMAVAR--IRTE--------WAIAWIDISTGIFKIS- 178 +++ S+YL+ + RT+ + + + STG Sbjct: 231 SPLINIDDSLEVECIMADVPSSYLLCIFENIDRTKNKKSADAVFGLVAVQPSTGEVMYDR 290 Query: 179 ---TSNHDRLISDIMRIDPREIIF-------SEKELSHAEYKSLFETLGNVAVAQPNVFF 228 T + L + I+R+ P EI+ +E+ +S SL + F Sbjct: 291 FHDTKSRTELETRILRLQPVEILLPSDISDCTERLISSLTSASLRDDDRIRIERMDKSHF 350 Query: 229 DHSISESRIADYYNITTVDTFGS--------FSQVEKTAAAAAISYIKKTQM--VNKPTI 278 ++S + I+++Y + GS F + + AA I Y+K+ + + + Sbjct: 351 EYSQAFQLISEFYGQEQHISAGSQKLTEILTFDKSVICSLAATIKYLKEFHLEKILYNSS 410 Query: 279 GYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSITGAGGRLFAERIASP 337 + + L ++ NLEIL+ + + + SL+ +D++ T G R + + P Sbjct: 411 NFTQMSSKNECLRMNGTTLKNLEILQNQTDLKTKGSLIWVLDHTRTCFGRRKIKQWVTQP 470 Query: 338 LTDSTKINTRLDSIN-FFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRD 396 L ++ +IN RL++++ + + + ++ L PD+ R + + + ++ +I Sbjct: 471 LVNTREINARLEAVSEVLLSDSSVFTQVRSHLSKLPDLERGVCSIYHKKCSTQEFFLIVS 530 Query: 397 ---GIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE--KTLSSMLSDDLPTFKRDGG 451 I + + L +K+ + L + ++PQ LE ++L++ Sbjct: 531 TLCNISNNMEALIPAIKSQVKSPLLQTI--FAEIPQMLEPMHKFLNVLNESAARTGNKTE 588 Query: 452 FLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI-KNLKIKHNNNLG--YFIEVTSS 508 +D D R L Q ++ L+ + KI KN + + G + IEV +S Sbjct: 589 LFKDLTDFPKISARKLEIQ--EMLLKLEAHLGDIRKILKNPAASYTSVYGQEFLIEVKNS 646 Query: 509 SASVLKKDLESKDRFIHRQTMSNLTRFTTLELID-------LENRITNATNSALLIELES 561 SV+ D +I + ++RF + +++ L ++ N+ L L+ Sbjct: 647 LGSVVPPD------WITVSSTKAVSRFHSPFIVENYRHLNQLREKLVLDCNTEWLHFLDK 700 Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII-DNSTNFIVKDGRHP 620 F E S+ + +A D +LA +AK+ YCRP + D+ + I+K+GRHP Sbjct: 701 FG-------ENYHSVCKSINHLATADCIFSLAEVAKQDGYCRPAVHDSGSEIIIKNGRHP 753 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +++ L++QS F+ N L DK ++ ++TGPNMGGKS++++Q ALI IMAQ+G Sbjct: 754 VIDLLLEEQSQ--FVPNSTSLMA--DKE--RVMIITGPNMGGKSSYIKQVALITIMAQIG 807 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 SYVPA +GIVD +F+R+G+ADN+ GRSTFM E+++TA IL AT +S VILDE+GR Sbjct: 808 SYVPAEAVTVGIVDGIFTRMGAADNIYKGRSTFMDELLDTAEILKNATPRSLVILDELGR 867 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS----LKRFHNATL--QVSD 794 GT+T DG++IA++T+EY+ ++ L TH+ L +L K+ + +H A + D Sbjct: 868 GTSTHDGIAIAYSTLEYIIKSVTSLTLFVTHYPSLCELEKAYAEQVGNYHMAFFVDEEED 927 Query: 795 SNEG----------IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYH 844 ++ G + FL+++ GIA SYG+ V KLA +P++V++RA K E+L Sbjct: 928 TDSGLSESLQQPQHVTFLYQITQGIAARSYGLNVAKLADIPHSVVTRAACKSKALEELVE 987 Query: 845 HNQKDMRLY 853 +K ++ + Sbjct: 988 MKRKKLKAF 996 >gi|322699711|gb|EFY91470.1| DNA mismatch repair protein msh6 [Metarhizium acridum CQMa 102] Length = 1220 Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 247/880 (28%), Positives = 420/880 (47%), Gaps = 112/880 (12%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P +QY EIK D++VF++ G FYEL+ +DA + + +T R ++ M G Sbjct: 337 SPFEKQYWEIKQNLWDTIVFFKKGKFYELYENDATIGHQEFDFKMTDR-----VNMRMVG 391 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL--EAKKRGNKS------LVRRNVVRLVTPG 137 VP + +H++ + I +++A +Q+E+ L E ++R ++S ++ R + ++T G Sbjct: 392 VPESSLDHWVNQFIAKQYKVARVDQMETNLGKEMRERQDRSGKKADKVISRELSCVLTAG 451 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFKISTSNHD----RLISDI 189 TL + +L + Y +A+ + + IA+ D +TG F++S D + + + Sbjct: 452 TLVDGSMLQDDMAAYCVAIKESVVDDLPAFGIAFADTATGRFQLSGFTDDVDLTKFETFV 511 Query: 190 MRIDPREIIFSEKELSHAEYKSLFETLGNVAVA---QPNVFF---DHSISESRIADYYNI 243 +I PRE++ + LS + L + +P F D S E + +Y+ Sbjct: 512 AQIAPRELLIEKSHLSTRALRILKNNTSPTTIWTHLKPGSEFWDADTSRRELKCGNYFTT 571 Query: 244 TTV--DTFGSFSQVEK------TAAAAAISYIKKTQMVNKPTIG---YPEREDIQ--STL 290 D + Q K +A A +SY+K Q+ +P + + + IQ TL Sbjct: 572 QEGEDDVWPEVLQQYKDDDLVMSAVGALVSYLKFLQL-ERPLLSQGNFEKYSPIQKNGTL 630 Query: 291 FIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLD 349 +D NLE+ T +GS E +L ++ IT G RLF + +A PL D +IN RLD Sbjct: 631 VLDGQTLVNLELFSNTSNGSSEGTLFSLLNKCITPFGKRLFRQWVAHPLCDIQRINERLD 690 Query: 350 SINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG---IRSGINILN 406 +++ +P + L PD+ R +SR+ G +P+D + +G I + +L Sbjct: 691 AVDMLNADPTVREQFASQLVKMPDLERLISRIHAGACKPEDFVRVLEGFEQIEFTMGLLQ 750 Query: 407 LFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGA--------- 457 F + G V++L +SSM + + P F R A Sbjct: 751 AFKGGN------GLVDRL----------ISSMPNLEEPLTYWKTAFDRRKAREDKILIPA 794 Query: 458 -------DASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSS- 509 D SL++ ++DQ +++ + E K + LK Y IE S Sbjct: 795 RGIEPDFDDSLNQMEEIKDQLNDLLSEKK----GELKCRTLKFTDVGKEIYQIETPKSVK 850 Query: 510 -ASVLKKDLESKDRFIHRQTMSNLTRFTT--LELIDLENRITNATNSALLIELESFEILS 566 S ++ +KD + R LT+ E +L +++ S L + F++ Sbjct: 851 VPSSWRQMSATKD--VKRWYFPQLTQLVRELQEAEELHSQLVREIASRLF---QKFDVDY 905 Query: 567 NAIIEQSESLDNASQVIAIID--ISIALAILAKEQNYCRP-IIDNSTNFI-VKDGRHPIV 622 N + A +++A +D +S+A A A Q CRP +D +F+ ++ RHP + Sbjct: 906 NTWLL-------AIKIVAQLDCLVSLAKASNALGQPSCRPQFVDEERSFVDFEELRHPCM 958 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 + FI ND L + K+ LLTG N GKST LR + + VIMAQ+G Y Sbjct: 959 INAVDD-----FIPNDVKLG----GDQAKINLLTGANAAGKSTVLRMSCVAVIMAQIGCY 1009 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA A + VD++ SR+G+ DN+ + +STF VE+ ET IL++AT +S VILDE+GRGT Sbjct: 1010 VPAVSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGT 1069 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLLATHFHEL-TDLSKSLK-RFHNATLQVSDSNEGII 800 ++ DG+++A A + ++ C G ATH+H L T+ + R + V D+ + Sbjct: 1070 SSYDGVAVAQAVLHHVATHIGCVGFFATHYHSLATEFENHPEIRARRMQIHVDDAERKVT 1129 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 FL+K+ G+A+ S+G+ + G+ + VI RA + +E Sbjct: 1130 FLYKLEDGVAEGSFGMHCAAMCGISDRVIERAEVAARDWE 1169 >gi|319411719|emb|CBQ73763.1| related to MSH6-DNA mismatch repair protein (N-terminal fragment) [Sporisorium reilianum] Length = 1279 Score = 283 bits (725), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 250/899 (27%), Positives = 430/899 (47%), Gaps = 115/899 (12%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TP +Q+ EIK + D+++F++ G FYEL+ +DAL+ R + LT R K + Sbjct: 377 KDFTPFEKQFWEIKQNHWDTVLFFQKGKFYELYEEDALIGHREFDLKLTDRVK-----MK 431 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPL-------EAKKRGNKSLVRRNVVRLVT 135 M GVP + + + K + +G+++ +Q E+ + E + G +V R + ++T Sbjct: 432 MVGVPEASFDIFAAKFLALGYKVGRVDQTETAVAKGMRVGERSRGGGSEIVNRELRHVLT 491 Query: 136 PGTLTEDQLLSPTDSN-YLMAVARIRTE------WAIAWIDISTGIFKISTSNHD----R 184 GT+ + L P D N Y +++ T + + +D +T F ++ D R Sbjct: 492 SGTIVDAASL-PDDLNSYCVSIKEAATPGRNGPIFGVCTLDAATAEFNLTEFEDDESRTR 550 Query: 185 LISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVA---VAQPNV-FFDHSISESRIADY 240 L + + + +E++ + LS + L T+ + A + +P V F + + ++ Sbjct: 551 LETLLRSLRLKEVLHEKGGLSAPTLRVLRSTVPSTAQTTMLKPGVEFLEPETTLRKLNAL 610 Query: 241 YN--------ITTVDTF-------GSFSQVEKTAAAAAIS----YIKKTQM------VNK 275 +N + ++D G S V++ A +A+ Y+ + + Sbjct: 611 FNPNVDAEARLESLDPVDPSLLPEGIASMVDRPGAMSALGGMLCYLAQLNLDRDLCSSRN 670 Query: 276 PTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIA 335 I P R+D L +D+ + ++L +L+ G+ E +L + ++ +T +G RLF + Sbjct: 671 FNIFDPLRQD--KCLVLDAQSLTHLNVLQNDEGTDEGTLHRLLNRCVTPSGKRLFKIWLV 728 Query: 336 SPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIR 395 +PL + I R D++ ++NP + + K+ PD+ R + R++ G+ P+D + Sbjct: 729 APLATADAIRARQDAVEDLLKNPCFGDEFETFGKALPDIERIVPRVRAGKCRPRDFTAV- 787 Query: 396 DGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLP---TFKRD--G 450 + L F K AV++L+ QS E + L +P T R+ Sbjct: 788 ------LKSLARFEK---------AVKQLRSQCQSFETEVIDALLQSIPAVSTMARELQS 832 Query: 451 GF--LRDGADASLDETRSLRDQSKRIIASL--QLKYAEETKIKNLKI-------KHNNNL 499 F DG+ ++ D+++ IA + QL++ ET K LK+ KH Sbjct: 833 SFKVTEDGSFHPIEGAFEPYDRAETAIAEVEAQLEHEIETYRKQLKLTASKCAWKHLGTK 892 Query: 500 GYF---IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 F + V + S K +KDR R+ + ++ DL I A + L Sbjct: 893 DIFQVEVPVATKVPSNWTKLSGTKDR----------NRWYSPKVRDLVQDIKEARETRLA 942 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIID--ISIALAILAKEQNYCRP-IIDNSTNFI 613 + + L + EQS+ A + +A ID +S+A A A + CRP ++D+ T + Sbjct: 943 ALKQFHQSLFASFSEQSDVFLQAVKTVAEIDCLLSLAKASYAIGEPSCRPELVDHETALL 1002 Query: 614 -VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 ++ RHP + + FI ND L ND+ + +LTG NM GKST R +A Sbjct: 1003 EFEELRHPCI-----AGDNVDFIPNDIRLGGENDE----VVILTGGNMAGKSTTARTSAT 1053 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 VI+AQ+G VPAS A + VD++ SR+G+ D + STFMVEM+ET+ I+N+ T +S Sbjct: 1054 AVILAQLGCRVPASRARLSPVDRVASRMGANDQIFRNNSTFMVEMLETSRIINECTPRSL 1113 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ- 791 VI+DE+GRGT+T DG +IA+A + +L RC TH+ L S R N +Q Sbjct: 1114 VIMDELGRGTSTFDGQAIAFAVLHHLVSRTRCLTFFLTHYTNLAYDFDSYSRVSNKHMQV 1173 Query: 792 -VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 V D+ +IF ++++ GIA+ SYG QV LAG+P + RA + K F + +Q + Sbjct: 1174 LVDDAKREVIFTYRLVDGIAESSYGTQVAALAGVPLEICDRAAVVSKQFAEATKASQAE 1232 >gi|242786643|ref|XP_002480846.1| DNA mismatch repair protein Msh6, putative [Talaromyces stipitatus ATCC 10500] gi|218720993|gb|EED20412.1| DNA mismatch repair protein Msh6, putative [Talaromyces stipitatus ATCC 10500] Length = 1183 Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 246/879 (27%), Positives = 411/879 (46%), Gaps = 105/879 (11%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P +QY EIK D++VF++ G FYEL+ +DA + + + LT R ++ M G Sbjct: 293 SPFEKQYWEIKQKFWDTIVFFKKGKFYELYENDATIGHQLFDLKLTDR-----VNMRMVG 347 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL--EAKKRGNKS---------LVRRNVVRLV 134 VP + +H+ + + G++IA +Q ES L E ++R +K +++R + ++ Sbjct: 348 VPEMSLDHWANQFVAKGYKIARVDQSESALGKEMRERDDKKSAKGSKEDKIIKRELSCVL 407 Query: 135 TPGTLTEDQLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFKISTSNHD----RLI 186 T GTL E +L S Y +A+ I + + IA++D +TG F +S D + Sbjct: 408 TAGTLVEGSMLQDDMSTYCVAIKEIILDGLPAFGIAFVDTATGQFYLSEFKDDADMTKFE 467 Query: 187 SDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA---QPNVFF---DHSISESRIADY 240 + I + P+E++ + +S + L G + +P F D +I E +DY Sbjct: 468 TFIAQTRPQELLLEKSAVSQKAMRILKNNTGPTTLWNHLKPGKEFWEADIAIRELDASDY 527 Query: 241 YNITTVDTFGSFSQV-----EK----TAAAAAISYIKKTQM------VNKPTIGYPERED 285 + D ++ QV EK +A A + Y++ ++ + T P R+ Sbjct: 528 FVSQESDNIDAWPQVLREAREKENAMSAFGALVQYLRVLKLDRDLISIGNFTWYDPIRK- 586 Query: 286 IQSTLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKI 344 ++L +D NLEI + G E +L + ++ IT G R+F + + PL D KI Sbjct: 587 -ATSLVLDGQTLINLEIFANSFDGGSEGTLFQLLNRCITPFGKRMFKQWVCHPLMDIDKI 645 Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 N R D+++ + + + L PD+ R +SR+ G + +D + +G Sbjct: 646 NARFDAVDALNADSTIRDQFSSQLTKMPDLERLISRIHAGACKAQDFLRVLEGFEQIEYT 705 Query: 405 LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM--LSDDLPTFK--------RDGGFL- 453 ++L NDL G+ E L + K +SSM L L +K ++ G L Sbjct: 706 MSLL--NDL-----GSGEGL------IGKLVSSMPDLVSPLEYWKTAFDRLKAKENGILV 752 Query: 454 -RDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASV 512 G + D +++ +Q R + +L K E + + N Y +EV +V Sbjct: 753 PEQGIEEDFDASQATIEQIHRDLENLLKKSRRELGSTAICYRDNGKEIYQLEVPIKVKNV 812 Query: 513 LKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQ 572 K + + R+ EL L ++ A S I E E Sbjct: 813 PKS-------WDQMSATKQVKRYYFPELRALVRKLQEAQESHSQIVKEVAGRFYARFDEN 865 Query: 573 SESLDNASQVIAIID--ISIALAILAKEQNYCRPI-IDNSTNFI-VKDGRHPIVEKTLKQ 628 E+ + +++A +D IS+A A + + CRP+ +DN + I ++ RHP + Sbjct: 866 YETWLKSIRIVAQLDCLISLAKASSSLGEPSCRPVFVDNDRSVIEFEELRHPCM-----L 920 Query: 629 QSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYA 688 Q+ FI ND L + LLTG N GKST LR + VIMAQ+G Y+P A Sbjct: 921 QNVTDFIPNDVQLG----GKRASINLLTGANAAGKSTILRMTCVAVIMAQIGCYIPCQSA 976 Query: 689 HIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGL 748 + VD++ SR+G+ DN+ + +STF VE+ ET IL++AT +S VILDE+GRGT++ DG+ Sbjct: 977 RLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPKSLVILDELGRGTSSYDGV 1036 Query: 749 SIAWATIEYLHETNRCRGLLATHFHELT-------DLSKSLKRFHNATLQVSDSNEGIIF 801 ++A A + ++ G ATH+H L ++ R H V D +IF Sbjct: 1037 AVAQAVLHHIATHVGALGFFATHYHSLAAEFENHPEICPKRMRIH-----VDDEERRVIF 1091 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 L+K+ G+A+ S+G+ + G+PN VI A K +E Sbjct: 1092 LYKLEDGVAEGSFGMHCASMCGIPNKVIENAEHAAKQWE 1130 >gi|326437458|gb|EGD83028.1| hypothetical protein PTSG_12056 [Salpingoeca sp. ATCC 50818] Length = 906 Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 250/895 (27%), Positives = 409/895 (45%), Gaps = 128/895 (14%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 SS+ QY ++K PD ++ +G+FYEL+ +DA+L + L + L+K+G M Sbjct: 43 SSSWASTQYSDLKRKVPDHILLMEVGNFYELYLEDAILVNSKLPLALSKKG--------M 94 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G P+H + +I +L + +A+ +Q + G + ++R + R+ TPGTL + Sbjct: 95 AGFPIHRKDAWIPQLQALFSAVAVADQCDP-------GVSATLKRQIARIYTPGTLLPEI 147 Query: 144 LLSPTDSNYLMAVAR----IRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 + +L A+ ++ + + TG L++ + +D E++ Sbjct: 148 DVEDDSPRHLTAIVADNLFAPAKFGLCVFNNITGQLHFDEMAPADLLTTLPGLDTVELLL 207 Query: 200 SEKELSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRI----------ADYYNITTVDT 248 +L + L +AQ P+V +S+ R ++ T D Sbjct: 208 INPDLR----DDVCRILSKRGIAQSPSVPLTNSLHRLRCFNDTFVMGVPENWLARNTGDL 263 Query: 249 FGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPERE--DIQST----------------- 289 S +++ A +Y+++ PT+ P + + QST Sbjct: 264 PLPLSDLQRAAGNVVTNYLRRCYPKGLPTLLLPHQSGTNSQSTDANVSAASPQPSSPSSS 323 Query: 290 -------------------LFIDSAARS--NLEILRTLSGSREQSLLKTIDYSITGAGGR 328 L ID+ R NL + R + SLL +D +++ G R Sbjct: 324 FDVHVEDDVSALPPIDKEQLVIDADTRESLNLTVPRG-----KGSLLHVVDNTVSAFGRR 378 Query: 329 LFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEP 388 R+A+P+TD +I RLD + +F N +Q++L + D R LS L R Sbjct: 379 ELRSRLANPITDRHEIERRLDLVEYFYDNHEHGAALQRLLSACADPLRCLSSLS-ARATL 437 Query: 389 KDIAVIRDGIRSGINILNLFLK--NDLP-------EELRGAVEKLKKLPQSLEKTL---- 435 + V + + + + N P E+L A+E L +++ + L Sbjct: 438 SNTTVNLAKLAEFCTRVEMIVSSPNLAPDVSSVGGEQLAAALEDLHHFTKAVPRELFESA 497 Query: 436 -SSMLSDDLPTFKRDGGFLRDGADASLDETRS-----LRDQSKRII-ASLQLKYAEETK- 487 SS D F G DA++DE R LR+ K SL + E + Sbjct: 498 NSSSAESDDDDDAETSVFPAPGFDATVDEQREIVSAILREAQKHAADISLDARLTEPMEG 557 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 + ++IK L ++ + S+LK+ L R Q++S L+L + Sbjct: 558 VLAMQIK--PKLAAELKKSVRGFSLLKRGLYDTPRL---QSLS-------LKLGHARREL 605 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 T+A ++E + +I S + AS+V+A +D+ LA A + Y RP I Sbjct: 606 TDA-------QMECARRVCGVLIANSHLFEKASRVLAHLDVCAGLARTATLREYVRPTIT 658 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 + +F V GRH I++ + F NDC + + K ++TGPNMGGKSTFL Sbjct: 659 DGVDFNVVQGRHAILDALTAGDALHHFRPNDCVM------DEHKSVIITGPNMGGKSTFL 712 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQNAL+V++AQMGS+VPA IGIVDKLFSRVG+ DN G+STF+VEM ET++I+N A Sbjct: 713 RQNALLVVLAQMGSFVPAEECTIGIVDKLFSRVGAQDNQVEGKSTFLVEMEETSNIVNNA 772 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 T +SFV++DE+GRGT + +GL++A A L ++ CR L TH +L L + L Sbjct: 773 TARSFVVMDEVGRGTNSGEGLALAVAISHELAKSG-CRSLSVTHHLQLPALCQDLDNVGV 831 Query: 788 ATLQVSDSNEG-IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 ++G I+F H + PGIAD ++ I+V AG P V A +L++ ++ Sbjct: 832 YKFVAEKDDDGRILFHHSIKPGIADDAHAIEVAAFAGHPPAVTDMAAIVLRSLQQ 886 >gi|224047362|ref|XP_002196049.1| PREDICTED: mutS homolog 6 (E. coli) [Taeniopygia guttata] Length = 1350 Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 258/954 (27%), Positives = 446/954 (46%), Gaps = 161/954 (16%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 E+ L TP +R++ ++KS N D+++ Y++G FYEL+ DA+ LG+ K Sbjct: 392 EDYLNKCTPGVRRWWQLKSQNFDAVICYKVGKFYELYHMDAVTGVNELGLIFMK------ 445 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESP--LEA--KKRGNKS----LVRRNV 130 G P + L++ G+++A EQ E+P +EA K +G + +VRR + Sbjct: 446 GTWAHSGFPETAFGRFSDVLVQKGYKVARVEQTETPEMMEARCKSKGQSTKFDKVVRREI 505 Query: 131 VRLVTPGTLTEDQL-LSPTD--SNYLMAV------ARIRTEWAIAWIDISTGIFKISTSN 181 R++T GT T + P++ S +L++V A R + + ++D S G F + Sbjct: 506 CRIITKGTQTYSVMDCDPSENHSKFLLSVKEKEDSAGTRV-YGVCFVDTSMGKFHVGQFP 564 Query: 182 HDRLISD----IMRIDPREIIFSEKELSHAEYKSLFETLGNV---AVAQPNVFFDHS--- 231 DR S + P +++F + LS K L +L + + + F++ S Sbjct: 565 DDRHCSRFRTLVAHYTPVQVLFEKGNLSVDTQKILKGSLVSCIQEGLTSGSQFWNASKTL 624 Query: 232 ---ISESRIADYYN-------------ITTVD-----TFGSFSQVEKTAAAAAISYIKKT 270 + E + N +T+ T G S++ +A + Y+K+ Sbjct: 625 KVLLEEGYFKEKQNSENGCSLPSVIKSLTSESDSLGLTPGENSELALSALGGCVFYLKRC 684 Query: 271 QMVNKPTIGYPEREDI------------QSTLF--------IDSAARSNLEILRT-LSGS 309 ++++ + E+ S+LF +D NLE+L+ +GS Sbjct: 685 -LIDQELLSQANFEEYVPVDIATAKDMSSSSLFARTGQRMVLDGVTLMNLEVLQNGTNGS 743 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILK 369 E +LL+ ID T G RL + + +PL + IN RLD++ + P ++ + + LK Sbjct: 744 TEGTLLERIDSCCTPFGKRLLKQWLCAPLCNPKSINDRLDAVEDLLAVPDKMSEVSEYLK 803 Query: 370 SSPDVPRSLSRL-KIG-----RGEPKDIAVIRDGIR-------------SGINILNLFLK 410 PD+ R LS++ IG + P A+ + ++ G I+N ++ Sbjct: 804 KLPDLERLLSKIHSIGSPLKSQNHPDSRAIFYEELKYSKKKIADFLSTLEGFKIMNEIVE 863 Query: 411 --NDLPEELRGAVEKLKKL-------PQSLEKTLSSMLSDDLPTF-----KRDG------ 450 + + + V LK+L P LS+ L+ F ++ G Sbjct: 864 FMEEFASDFKSRV--LKQLVTCKARNPDGRFPDLSAELTRWDTAFDHNQARKTGVITPKL 921 Query: 451 GFLRDGADASLDETRSLR-------DQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 GF D D +L++ R+L D+ ++++ S ++Y K + Y + Sbjct: 922 GFDPD-YDRALEDIRALEEDLRRYLDKQRKLLGSKSVQYWGTGKNR-----------YQM 969 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 E+ S V+ ++L + + R + R+ T E+ + + NA + Sbjct: 970 EIPES---VISRNL--PEEYELRSSRKGYKRYWTKEIEKMLAAMVNAEERRDAALKDCMR 1024 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN--YCRPII----DNSTNFI-VKD 616 L + S+ A + IA++D+ ++LA ++ + CRP I DN+ F+ +++ Sbjct: 1025 RLFYNFAKNSKDWQTAVECIAVLDVLMSLAHYSQGGDGPLCRPEILLPRDNARPFLELRN 1084 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGK--LWLLTGPNMGGKSTFLRQNALIV 674 RHP + KT FI ND + ++ +S + L+TGPNMGGKST +RQ L+V Sbjct: 1085 SRHPCITKTF---FGDDFIPNDIVIGIKDEGSSSEASCVLVTGPNMGGKSTLMRQAGLLV 1141 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 +MAQ+G YVPA + +D++F+R+G++D + +G STF VE+ ET+SIL AT S V+ Sbjct: 1142 VMAQLGCYVPAEACRLTPIDRVFTRLGASDRIMAGESTFFVELSETSSILQHATEHSLVL 1201 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTD---LSKSLKRFHNATLQ 791 +DE+GRGTAT DG +IA A ++ L E +CR L +TH+H L + +++ H A + Sbjct: 1202 VDELGRGTATFDGTAIASAVVQELAERIQCRTLFSTHYHSLVEDYSHCGAVRLGHMACMV 1261 Query: 792 VSD----SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 ++ S E I FL+K I G SYG +LA +P VI + + K FEK Sbjct: 1262 ENESEDPSQETITFLYKFIEGACPKSYGFNAARLADIPEEVIQKGHRKAKEFEK 1315 >gi|7328295|emb|CAB82462.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus COL] Length = 423 Score = 281 bits (718), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 168/429 (39%), Positives = 248/429 (57%), Gaps = 46/429 (10%) Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N GYFIE+T ++ L+ S+ ++ +QT+SN RF T EL + E+ I A + A+ Sbjct: 3 NKVFGYFIEITRAN---LQNFEPSEFGYMRKQTLSNAERFITDELKEKEDIILGAEDKAI 59 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 +E + F L + + +E L +++I+ +D + A +A++ NY RP + + Sbjct: 60 ELEYQLFVQLREEVKKYTERLQQQAKIISELDCLQSFAEIAQKYNYTRPSFSENKTLELV 119 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 + RHP+VE+ + ++ N+C L N ++L+TGPNM GKST++RQ A+I I Sbjct: 120 ESRHPVVERVM---DYNDYVPNNCRLD-----NETFIYLITGPNMSGKSTYMRQVAIISI 171 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQMG+YVP A + I D++F+R+G+AD+L SG+STFMVEM+E L AT S +I Sbjct: 172 MAQMGAYVPCKEAVLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTYATEDSLIIF 231 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DEIGRGT+T DGL++A A IEY+ ET+ + L +TH+HELT L ++L N + ++ Sbjct: 232 DEIGRGTSTYDGLALAQAMIEYVAETSHAKTLFSTHYHELTTLDQALPSLKNVHVAANEY 291 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE------------KLY 843 +IFLHKV G D SYGIQV KLA LP VISRA IL FE K+ Sbjct: 292 KGELIFLHKVKDGAVDDSYGIQVAKLADLPEKVISRAQVILSEFEASAGKKSSISNLKMV 351 Query: 844 HH----NQKDMRLYYPEIQTKESKNNLSKND------KLF-------VE-KIKCLNLDEM 885 + NQ+++ L +E+ + LS+ D LF +E +IK LNL M Sbjct: 352 ENEPEINQENLNL-----SVEETTDTLSQKDFEQASFDLFENDQESEIELQIKNLNLSNM 406 Query: 886 SPLTALKTL 894 +P+ AL L Sbjct: 407 TPIEALVKL 415 >gi|58257342|gb|AAW69299.1| DNA mismatch repair protein [Pseudomonas fluorescens] Length = 421 Score = 280 bits (717), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 154/376 (40%), Positives = 228/376 (60%), Gaps = 16/376 (4%) Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 +SL + + + + L+ + T + NLK+ +N GYFIE+ S A D +I Sbjct: 2 QSLSENAGQFLIDLEAREKARTGLANLKVGYNRIHGYFIELPSKQAEQAPAD------YI 55 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 RQT+ RF T EL + E++ +A + AL E ++ L +I L + + +A Sbjct: 56 RRQTLKGAERFITPELKEFEDKALSAKSRALAREKMLYDALLETLISHLPPLQDTAGALA 115 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 +D+ LA A + P + + GRHP+VE+ L + PF+AND L Sbjct: 116 ELDVLSNLAERALNLDLNCPRFVSEPCMRITQGRHPVVEQVL----TTPFVANDLSL--- 168 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 D N+ ++ ++TGPNMGGKST++RQ ALIV++A +GS+VPA+ + +VD++F+R+GS+D Sbjct: 169 -DDNT-RMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCELSLVDRIFTRIGSSD 226 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 +LA GRSTFMVEM ETA+IL+ AT +S V++DE+GRGT++ DGLS+AWA E L R Sbjct: 227 DLAGGRSTFMVEMSETANILHNATERSLVLMDEVGRGTSSFDGLSLAWAAAERLAHL-RA 285 Query: 765 RGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGL 824 L ATH+ ELT L +S N L ++ NE I+FLH V+PG A SYG+ V +LAG+ Sbjct: 286 YTLFATHYFELTVLPESEPLVANVHLNATEHNERIVFLHHVLPGPASQSYGLAVAQLAGV 345 Query: 825 PNTVISRAYDILKTFE 840 P+ VI+RA + L E Sbjct: 346 PSAVITRAREHLSRLE 361 >gi|149408511|ref|XP_001512218.1| PREDICTED: similar to MutS homolog 3 (E. coli) [Ornithorhynchus anatinus] Length = 1058 Score = 280 bits (716), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 252/923 (27%), Positives = 431/923 (46%), Gaps = 138/923 (14%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ Q++E+K + D+++ G Y F +DA +A+R L I HL + Sbjct: 157 TPLELQFMEMKQQHKDAILCVECGYKYRFFGEDAEIAARELNIYC-----HLDHNFMTAS 211 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESP-LEAKKRGNKSLVRRNVVRLVTPGTL----- 139 +P H ++++L+ GH++ + +Q E+ L+A SL R + L T TL Sbjct: 212 IPTHRLFVHVRRLVANGHKVGVVKQTETAALKAIGENKSSLFTRKLTALYTKSTLIGEDV 271 Query: 140 ----------TEDQLLSPTDSNYLMAVARIRTE-----------WAIAWIDISTG----- 173 ED + T SNYL+ + + + I + +TG Sbjct: 272 NPLTLDDTVDVEDTAID-TSSNYLLCICENQNQENVKDKKGAIFIGIVGVQPATGEVVFD 330 Query: 174 IFKISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNV------- 226 F+ S S + L + I+R+ P E++ LS K + + ++ V + Sbjct: 331 SFQDSGSRSE-LETRILRMQPVELLLP-SHLSDQSEKCI-NRITSICVRDDRIRVERMDS 387 Query: 227 -FFDHSISESRIADYYNITTVDTFG--SFSQVEK------TAAAAAISYIKKTQMVNK-- 275 F++S + + ++Y+ + G SFS + + AA I Y+K+ + Sbjct: 388 LHFEYSQAFQLMTEFYSKDVLGIQGPPSFSGILDLDKPVICSLAAVIKYLKEFNLEKTLY 447 Query: 276 PTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSITGAGGRLFAERI 334 T + + + I+ NLEIL+ + + + SLL +D++ T G R + + Sbjct: 448 NTRNFKQLSSEMEYMTINGTTLKNLEILQNQTDLKTKGSLLWVLDHTKTPFGRRRLKKWV 507 Query: 335 ASPLTDSTKINTRLDSIN-FFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKD--- 390 PL S +IN RLD+++ + + +Q L PD+ R L + + ++ Sbjct: 508 TQPLLKSREINARLDAVSEVLLYESSMFGQLQNHLCRLPDLERGLCSIYHKKCSTQEFYL 567 Query: 391 ---------------IAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 I I ++S + + LFL ++PE L LK L + KT Sbjct: 568 IVKNLCRLKTEIQPLIPAIHSNVKSSL-LRKLFL--EIPELLDPVEYYLKILNEQAAKTG 624 Query: 436 -SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + L DL F +R D D T + + I L+ A+ + + Sbjct: 625 DKTHLFQDLTDFPS----IRKRKDEIQDVTSQIHAHLQEIRRILKNPSAQYVTVSGQE-- 678 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID-------LENRI 547 + IEV +S S + D + + ++RF + +++ L ++ Sbjct: 679 ------FMIEVKNSLTSSIPSD------WAKVGSTKAVSRFHSPFIVENYRHLNQLREQL 726 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII- 606 N+ L L+ F E SL A +A +D +LA +AK+ +YCRP + Sbjct: 727 VLDCNTEWLNFLDHFS-------EHYHSLCKAVHHLATVDCIFSLAKVAKQGDYCRPTVE 779 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 D ++K+GRHP+++ LK+Q ++ N LS +S ++ ++TGPNMGGKS++ Sbjct: 780 DEGRKIVIKNGRHPVIDVLLKEQDQ--YVPNSTHLS----GDSERVMIITGPNMGGKSSY 833 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 ++Q ALI +MAQ+GSYVPA A IGIVD +F+R+G+ADN+ GRSTFM E+ +TA I+ + Sbjct: 834 IKQVALITLMAQIGSYVPAEEASIGIVDGVFTRMGAADNIYKGRSTFMEELTDTAEIIQK 893 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR-- 784 AT+QS VILDE+GRGT+T DG++IA+AT+EY + L TH+ + +L KS + Sbjct: 894 ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIKAVTSLTLFVTHYPPVCELEKSYPQEV 953 Query: 785 --FHNATL------------QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVIS 830 +H L + + E + FL+++ G+A SYG+ V KLA +P ++ Sbjct: 954 GNYHMGFLVNEEECEQSPGSEDEQTPEFVTFLYQLTRGVAARSYGLNVAKLADVPGEILK 1013 Query: 831 RAYDILKTFEKLYHHNQKDMRLY 853 +A K E+L + +K ++ + Sbjct: 1014 KAAHKSKELEELVNMKRKRLKSF 1036 >gi|164423588|ref|XP_959678.2| DNA mismatch repair protein msh6 [Neurospora crassa OR74A] gi|157070157|gb|EAA30442.2| DNA mismatch repair protein msh6 [Neurospora crassa OR74A] Length = 1237 Score = 280 bits (716), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 242/877 (27%), Positives = 406/877 (46%), Gaps = 107/877 (12%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P QY EIK D++VF++ G FYEL+ +DA + + + LT R ++ M G Sbjct: 351 SPFETQYWEIKKNLWDTVVFFKKGKFYELYENDATIGHQLFDLKLTDR-----VNMRMVG 405 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL--EAKKRGNKS-----LVRRNVVRLVTPGT 138 VP + + ++ + + G+++A +Q+ES L E ++R K+ ++RR + ++T GT Sbjct: 406 VPESSLDMWVNQFVAKGYKVARVDQMESALGKEMRERDTKAKKADKIIRRELTCILTGGT 465 Query: 139 LTEDQLLSPTDSNYLMA----VARIRTEWAIAWIDISTGIFKISTSNHD----RLISDIM 190 L + +L ++ Y A V + + IA++D +TG F IS D + + + Sbjct: 466 LVDGSMLQDDNAVYCAAIKESVVDDKPAFGIAFVDAATGQFFISEFEDDVDLTKFETFVA 525 Query: 191 RIDPREIIFSEKELSHAEYKSLFETLGNVAVA---QPNV-FFDHSISESRIADYYNITTV 246 + PRE+I + LS + L + +P F+D ++ + Sbjct: 526 QTSPRELILEKSHLSTKALRILKNNTSPTTIWNYLKPGTEFWDADVARREL--------- 576 Query: 247 DTFGSFSQVEK-------------------TAAAAAISYIK----KTQMVNKPTIGYPER 283 D G F E +A A Y++ + ++++ + Sbjct: 577 DCSGYFVSGEGQEEVWPAKLKEARDKDLLMSALGALTQYLRMLKLERNLLSQGNFAWYNP 636 Query: 284 EDIQSTLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDST 342 TL +D + NLEI T +G E +L ++ IT G RLF + + PL + Sbjct: 637 IHRNGTLILDGQSLINLEIFANTANGGPEGTLFHLLNRCITPFGKRLFRQWVCHPLCNIQ 696 Query: 343 KINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGI 402 K+N RLD+++ + L + PD+ R +SR+ G P+D + +G Sbjct: 697 KLNERLDAVDMLNDDHSLREQFSSQMSKMPDLERLISRIHAGACRPEDFVKVLEGFEQID 756 Query: 403 NILNLFLK----NDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFL--RDG 456 + L N L + L ++ LK+ P KT RD L G Sbjct: 757 RTMELLESYGGGNGLVDRLIASMPDLKE-PLGYWKTAFDRKR------ARDDKLLIPEPG 809 Query: 457 ADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKD 516 + D +++ D+ K + L + + K K Y IEV K Sbjct: 810 IEEDFDRSQAELDRIKGELQELLERQKTALRCKTAKFTDVGKEVYQIEVP--------KT 861 Query: 517 LESKDRFIHRQTMSNLTRFTTLELIDLENRITNA--TNSALLIELES-----FEILSNAI 569 ++ ++ S + R+ EL DL + A T+S ++ E+ S F++ Sbjct: 862 VKVPPKWRQMSATSAVKRYYFKELEDLVRELQEAEETHSQIVKEVASRFFKRFDL----- 916 Query: 570 IEQSESLDNASQVIAIID--ISIALAILAKEQNYCRPIIDNSTNFIVK--DGRHPIVEKT 625 E+ A ++I+ +D IS+A A A Q CRP+ N +V+ + RHP + T Sbjct: 917 --DYETWLQAIRIISQLDCLISLAKASSALGQPCCRPVFVNDERTVVEFNELRHPCMLNT 974 Query: 626 LKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPA 685 + FI ND L + + LLTG N GKST LR + + VIMAQ+G YVPA Sbjct: 975 VDD-----FIPNDIKLG----GDEANINLLTGANAAGKSTILRMSCIAVIMAQIGCYVPA 1025 Query: 686 SYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATL 745 A + VD++ SR+G+ DN+ + +STF VE+ ET IL++AT +S VILDE+GRGT++ Sbjct: 1026 VSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSY 1085 Query: 746 DGLSIAWATIEYLHETNRCRGLLATHFHEL-TDLSKSLK-RFHNATLQVSDSNEGIIFLH 803 DG+++A A + ++ C G ATH+H L T+ + R + V + N+ I FL+ Sbjct: 1086 DGVAVAQAVLHHVASHIGCVGFFATHYHSLATEFENHPEIRARRMQIAVDEENKRITFLY 1145 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 K+ G+A+ S+G+ + G+P+ VI R+ K +E Sbjct: 1146 KLEDGVAEGSFGMHCAAMCGIPDKVIRRSEVAAKEWE 1182 >gi|332710121|ref|ZP_08430074.1| DNA mismatch repair protein MutS [Lyngbya majuscula 3L] gi|332351079|gb|EGJ30666.1| DNA mismatch repair protein MutS [Lyngbya majuscula 3L] Length = 1013 Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 194/645 (30%), Positives = 316/645 (48%), Gaps = 36/645 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR--GKHLGKDIPM 83 TPMM + E+K +++ YR+GDFYE FF DA + S L + LT + GK +G+ +PM Sbjct: 43 TPMMHHFAELKDQYSHAVLLYRVGDFYETFFQDARIISEALELVLTSKEAGKGVGR-VPM 101 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 GVP H + Y L++ G+ IAIC+Q+E A K G + VRR V R++TPGTL E++ Sbjct: 102 TGVPHHALDRYSTMLVEKGYAIAICDQVEDASVAAKEGRQ--VRREVTRVLTPGTLMEEE 159 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR--LISDIMRIDPREIIFSE 201 +L +N+L AV + W +A+ DISTG F ++T + D L+ ++MR+ P E++ Sbjct: 160 MLHARRNNFLAAVVIAKNHWGLAYADISTGEF-LTTQDRDLDLLVQELMRLQPSEVLIPT 218 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVF---------FDHSISESRIADYYNITTVDTFGS- 251 +T ++ PN F F + + R+ + + + +++ G Sbjct: 219 NAPDLGSMLRPGQTSESLPDCLPNSFCYALRPQRHFTLAEARQRLLEQFRVRSLEGLGCE 278 Query: 252 FSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSR 310 + AA + Y+K TQ N + I L +D R NLEI T+ + Sbjct: 279 HLPLGVRAAGGLLEYLKDTQKENYVALQILRTYTIADYLILDHQTRRNLEITATVRDNTF 338 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKS 370 SLL +D + T GGR + PL + I R D+I + N L +Q++L+ Sbjct: 339 NGSLLWALDRTSTAMGGRALRRWLLQPLLEIKGIRARHDTIAELVDNTGLRQDLQQLLRK 398 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS 430 D+ R + GR +D+ + D + + +L P ++ ++ +P Sbjct: 399 IYDLDRLTGKASSGRANARDLVALGDSLLRLPELADLAAYGSSP-----YLKVMQNVPPQ 453 Query: 431 LEK---TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 LE+ TL L + P +G +R + LDE R+ ++ ++ IA+L++ E+T Sbjct: 454 LEELGHTLQEHLVESPPLHLTEGKLIRPQVNQQLDEMRAQAEEDQQWIANLEVTEREKTD 513 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 I LK+ N GY+I V + K + D +I +QT+ N R+ T EL + E RI Sbjct: 514 IPKLKVGFNKTFGYYISVPRA------KTAQVPDDYIRKQTLVNEERYITPELKEREARI 567 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 A +E E F L + + +++ + S+ +A +D+ LA +A Q YCRP +D Sbjct: 568 LTAREDLNRLEYEIFVGLRHEVGLEADRIRGVSRAVAALDVLCGLAEVAVYQGYCRPDMD 627 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKL 652 S + DGRHP+VE++L S F+ N L K G+L Sbjct: 628 QSREIRIIDGRHPVVEQSL---PSGLFVPNSASLGQNKLKVDGEL 669 Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 110/190 (57%), Positives = 142/190 (74%) Query: 652 LWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRS 711 L +LTGPN GKS +LRQ LI +MAQ+GS+VPAS A +GI D++F+RVG+ D+LA+G+S Sbjct: 783 LIILTGPNASGKSCYLRQVGLIQLMAQVGSFVPASEASLGICDRIFTRVGAVDDLATGQS 842 Query: 712 TFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATH 771 TFMVEM ETA+ILN AT++S V+LDEIGRGTAT DGLSIAWA EYL + R + ATH Sbjct: 843 TFMVEMNETANILNHATDKSLVLLDEIGRGTATFDGLSIAWAVGEYLAMEIKARTIFATH 902 Query: 772 FHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISR 831 +HEL +L+ L N + V + IIFLH+V PG A+ SYGI+ G+LAGLP +VI+R Sbjct: 903 YHELNELASILPNVANYQVTVKELANEIIFLHQVQPGGANRSYGIEAGRLAGLPTSVINR 962 Query: 832 AYDILKTFEK 841 A ++K EK Sbjct: 963 AKQVMKQIEK 972 >gi|156325874|ref|XP_001618609.1| hypothetical protein NEMVEDRAFT_v1g3328 [Nematostella vectensis] gi|156199531|gb|EDO26509.1| predicted protein [Nematostella vectensis] Length = 268 Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 137/260 (52%), Positives = 188/260 (72%), Gaps = 7/260 (2%) Query: 583 IAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLS 642 IA +D ++ A A + NY RPI+D ST+ +K+GRHP++EK L + +IAND L Sbjct: 12 IAQLDCLLSFAKTAIDNNYVRPILDESTDLEIKNGRHPVIEKQLP--IGEEYIANDVVL- 68 Query: 643 CPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGS 702 ++N ++ ++TGPNM GKS LRQ ALIV++AQMGSYVPA A IGIVDK+F+RVG+ Sbjct: 69 ---NRNQQQIIMITGPNMSGKSAILRQTALIVLLAQMGSYVPAQNARIGIVDKIFTRVGA 125 Query: 703 ADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHE-T 761 +DN++ G STFMVEM ETASILN + +S V+LDEIGRGT+T DG+SIAWA E+LHE Sbjct: 126 SDNISMGESTFMVEMNETASILNNISERSLVLLDEIGRGTSTYDGISIAWAIAEFLHEHP 185 Query: 762 NRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKL 821 ++ + L ATH+HEL D++++ +R N + V + + IIFL K++ G ++HS+GI V KL Sbjct: 186 SKAKTLFATHYHELNDMTETFERIKNYNVSVKELKDTIIFLRKLVAGGSNHSFGIHVAKL 245 Query: 822 AGLPNTVISRAYDILKTFEK 841 AG+PN VI RA IL+ EK Sbjct: 246 AGMPNRVIHRASKILEQLEK 265 >gi|322706069|gb|EFY97651.1| DNA mismatch repair protein msh6 [Metarhizium anisopliae ARSEF 23] Length = 1222 Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 240/866 (27%), Positives = 419/866 (48%), Gaps = 84/866 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P +QY EIK D++VF++ G FYEL+ +DA + + +T R ++ M G Sbjct: 339 SPFEKQYWEIKQNLWDTIVFFKKGKFYELYENDATIGHQEFDFKMTDR-----VNMRMVG 393 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL--EAKKRGNKS------LVRRNVVRLVTPG 137 VP + +H++ + I +++A +Q+E+ L E ++R ++S ++ R + ++T G Sbjct: 394 VPESSLDHWVNQFIAKQYKVARVDQMETNLGKEMRERQDRSGKKADKVISRELSCVLTAG 453 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFKISTSNHD----RLISDI 189 TL + +L + Y +A+ + + IA+ D +TG F++S D + + + Sbjct: 454 TLVDGGMLQDDMAAYCVAIKESVVDDLPAFGIAFADTATGRFQLSGFTDDVDLTKFETFV 513 Query: 190 MRIDPREIIFSEKELSHAEYKSLFETLGNVAVA---QPNVFF---DHSISESRIADYYNI 243 +I PRE++ + LS + L + +P F D S E + +Y+ Sbjct: 514 AQIGPRELLIEKSHLSTRALRILKNNTSPTTIWTHLKPGTEFWDADTSRRELKCGNYFTT 573 Query: 244 --TTVDTFGSFSQVEK------TAAAAAISYIKKTQMVNKPTIG---YPEREDIQ--STL 290 + D + Q K +A +SY+K ++ +P + + + IQ TL Sbjct: 574 QESEDDVWPEVLQQYKDDDLVMSAVGGLVSYLK-FLLLERPLLSQGNFEKYSPIQKNGTL 632 Query: 291 FIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLD 349 +D NLE+ T +GS E +L ++ IT G RLF + +A PL D +IN RLD Sbjct: 633 VLDGQTLVNLELFSNTSNGSSEGTLFSLLNKCITPFGKRLFRQWVAHPLCDIQRINERLD 692 Query: 350 SINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG---IRSGINILN 406 +++ +P + L PD+ R +SR+ G +P+D + +G I +++L Sbjct: 693 AVDMLNADPTVREQFASQLVKMPDLERLISRVHAGACKPEDFVRVLEGFEQIEYTMSLLQ 752 Query: 407 LFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFL--RDGADASLDET 464 F + G V++L LE+ L+ + R+ L G + D++ Sbjct: 753 AFKGGN------GLVDRLVLSMPDLEEPLTYWKTAFDRRKAREDKILIPSRGIEPDFDDS 806 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSS--ASVLKKDLESKDR 522 + ++ K + L + E K + +K Y +E S S ++ +KD Sbjct: 807 LNRMEEIKDQLNDLLSEKKGELKCRTIKFTDVGKEIYQMETPKSVKVPSSWRQMSATKD- 865 Query: 523 FIHRQTMSNLTRFTT--LELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNAS 580 + R LT+ E +L +++ S L + F++ N + A Sbjct: 866 -VKRWYFPQLTQLVRELQEAEELHSQLVREIASRLF---QKFDVDYNTWLL-------AI 914 Query: 581 QVIAIID--ISIALAILAKEQNYCRP-IIDNSTNFI-VKDGRHPIVEKTLKQQSSKPFIA 636 +++A +D +S+A A + Q CRP +D +F+ ++ RHP + T+ FI Sbjct: 915 KIVAQLDCLVSLAKASNSLAQPSCRPQFVDEERSFVDFEELRHPCMINTVDD-----FIP 969 Query: 637 NDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKL 696 ND L + K+ LLTG N GKST LR + + VIMAQ+G YVPA A + VD++ Sbjct: 970 NDVKLG----GDQAKINLLTGANAAGKSTVLRMSCVAVIMAQIGCYVPAVSARLTPVDRI 1025 Query: 697 FSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIE 756 SR+G+ DN+ + +STF VE+ ET IL++AT +S VILDE+GRGT++ DG+++A A + Sbjct: 1026 MSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVLH 1085 Query: 757 YLHETNRCRGLLATHFHEL-TDLSKSLK-RFHNATLQVSDSNEGIIFLHKVIPGIADHSY 814 ++ C G ATH+H L T+ + R + V D + FL+K+ G+A+ S+ Sbjct: 1086 HVATHIGCVGFFATHYHSLATEFENHPEIRAKRMQIHVDDEERKVTFLYKLEDGVAEGSF 1145 Query: 815 GIQVGKLAGLPNTVISRAYDILKTFE 840 G+ + G+ + VI RA + +E Sbjct: 1146 GMHCAAMCGISDRVIERAEVAARDWE 1171 >gi|225018516|ref|ZP_03707708.1| hypothetical protein CLOSTMETH_02463 [Clostridium methylpentosum DSM 5476] gi|224948717|gb|EEG29926.1| hypothetical protein CLOSTMETH_02463 [Clostridium methylpentosum DSM 5476] Length = 345 Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 152/354 (42%), Positives = 217/354 (61%), Gaps = 19/354 (5%) Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 A +++E E FE L + EQ + + +A +D+ + A +A + NY P I Sbjct: 2 ANERIVVLEQEIFEELRRYVAEQLHYIQQTAGAVAAVDVLCSFAEVAVDNNYVCPEIATG 61 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 ++K+GRHP+VE L PF+ ND L D + ++ ++TGPNM GKST++RQ Sbjct: 62 GELVIKEGRHPVVETVL----DSPFVPNDTLL----DVGANRMAIITGPNMAGKSTYMRQ 113 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ALIV+MAQ+GS+VPA YA I +VDK+F+RVG++D+L++G+STFMVEM E A IL AT Sbjct: 114 VALIVLMAQIGSFVPAKYARIALVDKIFTRVGASDDLSAGQSTFMVEMSEVAHILKHATK 173 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNR--CRGLLATHFHELTDLSKSLKRFHN 787 S VILDEIGRGT+T DG+SIA A +EY+ +T + C+ L ATH+HELT L K L+ N Sbjct: 174 NSLVILDEIGRGTSTFDGMSIAKAVVEYMVQTRQLGCKTLFATHYHELTVLEKQLEGVVN 233 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ 847 + V + I FL K++ G AD SYGI V KLAG+P+ V+ RA +IL E Q Sbjct: 234 YNIVVKKRGDDITFLRKIVRGGADDSYGIAVAKLAGIPDQVVGRANEILAELESGKPQVQ 293 Query: 848 KDMRLYYPEIQTKESKNNLSKND---KLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + ES +S +D + +EKI+ + + +SP+ AL LY +K Sbjct: 294 PQ------DYMSSESTLQISFDDNSSEQALEKIRKTDPNTLSPIEALNVLYELK 341 >gi|134080992|emb|CAK41506.1| unnamed protein product [Aspergillus niger] Length = 1104 Score = 278 bits (710), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 247/896 (27%), Positives = 428/896 (47%), Gaps = 116/896 (12%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM +Q I+IK + D+++ +G + F +DA +A++ L I HL + Sbjct: 208 TPMEKQVIDIKRKHMDTVLVVEVGYKFRFFGEDARVAAKELSIV-----SHLDR-FASAS 261 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ- 143 +PVH + ++++L+ GH++ + QIE + L+A + R + L T GT +D Sbjct: 262 IPVHRLHVHVKRLVAAGHKVGVVRQIETAALKAAGDNRNAPFVRKLTNLYTKGTYIDDAE 321 Query: 144 -LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPR--EIIFS 200 L P M A A ++ T N +++ I+ + P +I++ Sbjct: 322 GLGGP------MPAASGGASPATGYLLCITETNAKGWGNDEKVQVGIVAVQPATGDIVYD 375 Query: 201 EKELSHAEYKSLFET-LGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE--- 256 + E +S ET L ++A + + + S + ++ + + + ++ FG ++VE Sbjct: 376 DFE--DGFMRSEIETRLLHIAPCELLIVGELSKATEKLVQHLSGSKLNVFGDKTRVERVL 433 Query: 257 --KTAAAAAISYIK-------KTQMVN---------KPTIGYPEREDIQSTLFIDSAARS 298 KTAAA + S++ KT + + PE+ I + I+ Sbjct: 434 KSKTAAAESHSHVSSFYAGKMKTASAADDAQASSLLQKVLNLPEQVTICLSSMIEHMKEY 493 Query: 299 NLEILRTLS------GSREQSLLK------------------------TIDYSITGAGGR 328 LE + L+ SR LL T+D + T G R Sbjct: 494 GLEYVFELTKYFQHFSSRSHMLLNGNTLMSLEIYQNQTDHTTKGSLFWTLDRTQTRFGQR 553 Query: 329 LFAERIASPLTDSTKINTRLDSINFFIQNP---ILINPIQKIL-KSSPDVPRSLSRLKIG 384 + + + PL D +++ R++++ ++NP +++ ++ +L K D+ +SL R+ G Sbjct: 554 MLRKWVGRPLLDKSRLEERVNAVEE-LKNPEKTVMVERLKGLLGKVKSDLEKSLIRIYYG 612 Query: 385 RGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAV----EKLKKLPQSLEKTLSSMLS 440 + ++ + +++ I F P + A E + LP LE ++ + Sbjct: 613 KCTRPELLTV---LQTMQMIAQEFSDVKSPADTGFASTAINEAITCLPTILEDVVAFLDK 669 Query: 441 DDLPTFKRDG--GFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI-------KNL 491 ++ K D F R+ +ET + DQ K IAS++ + E + K + Sbjct: 670 INMHAAKSDDKYAFFREA-----EETEDISDQ-KLGIASVEHELEEHRSVAGQKLGKKTV 723 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 + K + Y IEV +SSAS+ + ++ ++RF T E+I L + Sbjct: 724 EYKSVAGIDYLIEVENSSASIKRVPAS----WVKVSGTKKVSRFHTPEVIQLMRQRDQHK 779 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 + ++F L I + + ++ Q +A +D IALA +A + Y +P + T Sbjct: 780 EALAAACDQAFISLLADIATKYQPFRDSVQALATLDCLIALATIASQPGYVKPEYTDHTC 839 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 V GRHP+VE+ L ++ ND DL D + + L+TGPNMGGKS+++RQ A Sbjct: 840 IQVDQGRHPMVEQLLLDS----YVPNDIDL----DSDKTRALLVTGPNMGGKSSYVRQVA 891 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LI IM Q+GSYVPA A +G++D +F+R+G+ DN+ +G STFMVE+ ETA IL QAT +S Sbjct: 892 LIAIMGQIGSYVPAQSAKLGMLDAVFTRMGAFDNMLAGESTFMVELSETADILKQATPRS 951 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL--KRFHNAT 789 VILDE+GRGT+T DG++IA A ++Y+ + R L TH+ L+ + S + N Sbjct: 952 LVILDELGRGTSTHDGVAIAQAVLDYMVRSIRSLTLFITHYQHLSSMVHSFADQELRNVH 1011 Query: 790 LQVSDSNEG----IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 ++ ++S G I FL++V G+A SYG+ V +LA LP ++ +A K E+ Sbjct: 1012 MRFTESGTGTDEEITFLYEVGEGVAHRSYGLNVARLANLPGALLDQARQKSKELEE 1067 >gi|189201826|ref|XP_001937249.1| DNA mismatch repair protein mutS [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187984348|gb|EDU49836.1| DNA mismatch repair protein mutS [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 1192 Score = 277 bits (708), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 235/868 (27%), Positives = 413/868 (47%), Gaps = 88/868 (10%) Query: 30 RQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVH 89 +QY EIKS D++VF++ G FYEL+ DA + + + LT R ++ M GVP Sbjct: 302 KQYWEIKSKWWDTVVFFKKGKFYELYEKDATIGHQLFDLKLTDR-----VNMRMVGVPEA 356 Query: 90 TANHYIQKLIKIGHRIAICEQIESPL--EAKKRGNKS-------------LVRRNVVRLV 134 + + + + + G+++A +Q+ES L E ++R +K ++RR + ++ Sbjct: 357 SLDMWATQFVAAGYKVARVDQMESALGKEMRERDDKGKTPKKAAGGKENKVIRRELATVL 416 Query: 135 TPGTLTEDQLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFKISTSNHD----RLI 186 T GTL + +L S Y MA+ I + + +A++D +T F++ D + Sbjct: 417 TSGTLVDTGMLQSEMSTYCMAIKEIDRDNLPAFGVAFVDTATAQFQLCEFTDDVDMTKFE 476 Query: 187 SDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA---QPNVFF---DHSISESRIADY 240 + I ++ P E++ + +S + L + +PN F D +I E + +Y Sbjct: 477 TLIAQMRPGELLLEKSCVSAKVLRILKNNTPPTTIWNWLKPNKEFWPADIAIRELEVNNY 536 Query: 241 YNITTVDTFGSFSQVEK---------TAAAAAISYIKKTQMVNKP--TIGYPEREDI--- 286 + T D ++ V + +A A + Y++ T M+ + T+G + D Sbjct: 537 FESPTEDNIEAWPAVLREAREQELVMSAFGALLQYLR-TLMIERDLVTLGNFQWYDPIRK 595 Query: 287 QSTLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKIN 345 ++L +D + NLEI T GS E +L ++ IT G RL + + PL D+ KIN Sbjct: 596 ATSLVLDGQSLINLEIFANTFDGSAEGTLFAMLNRCITPFGKRLLRQWVCHPLADAAKIN 655 Query: 346 TRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG---IRSGI 402 RLD+++ + +++ L PD+ R +SR+ GR +D + +G I I Sbjct: 656 ARLDAVDALNADSSIMDNFSSSLSKLPDLERLISRVHAGRCRAQDFLKVLEGFEQIEYTI 715 Query: 403 NILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRD-GADASL 461 ++L F D + + + L SL K S+ D +++G + + G + Sbjct: 716 SLLKQF--GDGEGVIGQLISSMPDLGTSLAKWTSAF---DRNIARKEGLLIPEPGIEEDF 770 Query: 462 DETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG---YFIEVTSSSASVLKKDLE 518 D ++ + K + L K +E ++ N++G Y +EV K ++ Sbjct: 771 DNSQERVEACKADLDVLLKKARKELGSNAVQY---NDIGKEIYQLEVP--------KKVK 819 Query: 519 SKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDN 578 + + + +TR+ + EL L + A + I E E + Sbjct: 820 VPNSWDQMSATAKVTRYYSPELRKLVRALQEAQETHGQITREVATRFCQRFDEDYKVWLA 879 Query: 579 ASQVIAIID--ISIALAILAKEQNYCRPIIDNSTNFIVK--DGRHPIVEKTLKQQSSKPF 634 A ++IA +D IS+A A + + CRP+ + +V+ + RHP + T+ F Sbjct: 880 AVKIIAQLDCLISLAKASASLGEPSCRPVFEEGKRTVVEFEELRHPCMLNTVAD-----F 934 Query: 635 IANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVD 694 I ND L + + LLTG N GKST LR + VI+AQ+G Y+P + A + VD Sbjct: 935 IPNDIRLG----GDGANISLLTGANAAGKSTILRMTCIAVILAQVGCYLPCTSARLTPVD 990 Query: 695 KLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWAT 754 ++ SR+G+ DN+ + +STF VE+ ET IL++AT +S VILDE+GRGT++ DG+++A A Sbjct: 991 RIMSRLGANDNIFAAQSTFFVELSETQKILSEATPRSLVILDELGRGTSSYDGVAVAQAV 1050 Query: 755 IEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ--VSDSNEGIIFLHKVIPGIADH 812 + + C G ATH+ L + N ++ V D ++ I FL+K+ G+A+ Sbjct: 1051 LHDISTRVGCVGFFATHYRSLAKEFEFHPEVQNKRMRIHVDDDSKSITFLYKLEEGVAEG 1110 Query: 813 SYGIQVGKLAGLPNTVISRAYDILKTFE 840 S+G+ + G+P VI A + +E Sbjct: 1111 SFGMHCAAMCGIPKKVIENAEKAAREWE 1138 >gi|327263145|ref|XP_003216381.1| PREDICTED: DNA mismatch repair protein Msh3-like [Anolis carolinensis] Length = 986 Score = 277 bits (708), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 249/925 (26%), Positives = 442/925 (47%), Gaps = 114/925 (12%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ Q++E+K+ D+++ G Y F +DA +A++ L I K + IP Sbjct: 82 TPLELQFLEMKNQYKDAILCVECGYKYRFFGEDAEIAAKELNIYCHKNHNFMSASIPTHR 141 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESP-LEAKKRGNKSLVRRNVVRLVTPGT-LTED- 142 + VH +++L+ G+++ + +QIE+ L+A SL R + L T T L ED Sbjct: 142 LFVH-----VRRLVAKGYKVGVVKQIETAALKAAGENRSSLFARKLTALYTKSTILGEDV 196 Query: 143 -QLLS----------PTD--SNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD------ 183 LL P+D NYL+ ++ + D+ G+ + + + Sbjct: 197 NPLLKLNNLVDAEEIPSDVCDNYLLCISESKENIRDKNQDVHIGVVAVQPTTGEVIFDSF 256 Query: 184 -------RLISDIMRIDPREIIFSEKELSHAE-----YKSLFETLGNVAVAQ-PNVFFDH 230 L S I+R+ P EII + E SL + + + N F++ Sbjct: 257 QDSAARLELESLILRLQPVEIILPKDVSDQTENIISAVTSLRLQDDRIRIERMENKLFEN 316 Query: 231 SISESRIADYYNITTVDTFGSFS--------QVEKTAAAAAISYIKKTQMVNKPTIGY-P 281 S + I D+Y+ +D+ GS + ++ + AA I Y+K+ N I Y P Sbjct: 317 SSAFQLITDFYSNQVLDSTGSHALSVLVKLDKIVLCSLAAVIVYLKQ---FNLERILYNP 373 Query: 282 EREDIQST----LFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSITGAGGRLFAERIAS 336 + S+ + ++ NLEIL+ S + SL +D++ T G R + + Sbjct: 374 SNFKMLSSEPEYMTLNGITLKNLEILQNQSDMKSNGSLFWILDHTKTSFGRRRLKKWVTQ 433 Query: 337 PLTDSTKINTRLDSIN--FFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVI 394 PL S++IN+RLD+++ ++ +LI I+ +L PDV R + + + ++ +I Sbjct: 434 PLLKSSEINSRLDAVSEVLMSESSVLIQ-IKTLLHKMPDVERGICSIYHKKCSTQEFFLI 492 Query: 395 ---RDGIRSGINILNLFLKNDLPEEL-RGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDG 450 + + I L ++ + L R + ++ L ++K LS +L+++ Sbjct: 493 VSTLSQLEASITALVPAIQTQVQAALLRKNLLEISDLLSPVKKYLS-ILNEEAAKSGDKT 551 Query: 451 GFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG---YFIEVTS 507 +D D L RS +D+ + ++ +Q+ + KI + + IEV + Sbjct: 552 QLFKDLQDFPL--IRSRKDEIQAVLYQIQMHLQDIRKILKCSFAGYVTVSGQEFQIEVKN 609 Query: 508 SSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID-------LENRITNATNSALLIELE 560 S + D +I + ++RF T +++ L ++ N+ L L+ Sbjct: 610 SLVFSVPSD------WIQVSSTKAVSRFHTPFIVENYRHLNQLREQLVLDCNAEWLRFLD 663 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII-DNSTNFIVKDGRH 619 F + S+ A +A +D +LA +AK+ +YCRP++ D + ++K+G+H Sbjct: 664 DFS-------DHYYSISKAVGHLATVDCIFSLAEVAKQGDYCRPVVKDGRSEIMIKNGKH 716 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+++ L +Q + ++ ND + C + + ++TGPNMGGKS++++Q ALI +MAQ+ Sbjct: 717 PVIDVLLGEQ--EQYVPNDTHIVC----DGQRAMIITGPNMGGKSSYIKQVALITLMAQI 770 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPA +GIVD +F+R+G+ DN+ G STFM E+ +TA I+ +AT+ S VILDE+G Sbjct: 771 GSYVPAEEVRVGIVDGIFTRMGATDNIFKGHSTFMEELTDTADIIRKATSHSLVILDELG 830 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR----FHNATLQVSDS 795 RGT+T DG++IA+AT+EY L TH+ L +L ++ R +H A L D Sbjct: 831 RGTSTHDGIAIAYATLEYFIRDVGSLTLFVTHYPPLCELERAYPRQVGNYHMAFLVNEDD 890 Query: 796 NEG------------IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY 843 +E + FL+++ +A SYG+ V KLA +P ++ +A K E+ Sbjct: 891 SEQKRGMKDEENPEFVTFLYQIKKEVAARSYGLNVAKLADVPEEILKKAAHKSKELERFV 950 Query: 844 HHNQKDMRLYYPEIQTKESKNNLSK 868 +K + L + E+ S L K Sbjct: 951 DIKRKRL-LIFAELWNIHSAGELQK 974 >gi|169596160|ref|XP_001791504.1| hypothetical protein SNOG_00833 [Phaeosphaeria nodorum SN15] gi|160701244|gb|EAT92328.2| hypothetical protein SNOG_00833 [Phaeosphaeria nodorum SN15] Length = 1217 Score = 277 bits (708), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 234/869 (26%), Positives = 408/869 (46%), Gaps = 87/869 (10%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P +QY EIKS D++VF++ G FYEL+ DA + + + LT R ++ M G Sbjct: 328 SPFEKQYWEIKSKFWDTIVFFKKGKFYELYEKDASIGHQLFDLKLTDR-----VNMRMVG 382 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL--EAKKRGNKS--------LVRRNVVRLVT 135 VP + + + + + GH++A +Q+ES L E ++R +K ++RR + ++T Sbjct: 383 VPEASLDMWATQFVAAGHKVARVDQMESALAKEMRERDDKKSTTKKADKVIRRELAAVLT 442 Query: 136 PGTLTEDQLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFKISTSNHD----RLIS 187 GTL + +L S Y MA+ I + + +A++D +T F++ D + + Sbjct: 443 AGTLVDTGMLQSDMSTYCMAIKEIERDNLPAFGVAFVDSATAQFQLCEIADDIDMTKFET 502 Query: 188 DIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA---QPNVFF---DHSISESRIADYY 241 I ++ P E++ + +S + L + +P+ F D +I E +Y+ Sbjct: 503 LIAQMRPGELLIEKSCISAKALRILKNNTAPSTIWNYLKPSKEFWPADITIREIDSNNYF 562 Query: 242 NITTVDTFGSFSQVEK---------TAAAAAISYIK----KTQMVNKPTIGYPEREDIQS 288 T D ++ V + +A A + Y++ + +V + + + Sbjct: 563 ESPTEDNVEAWPPVLREAREQDLVMSAFGALLQYLRTLKIERDLVTCGNFQWYDPIRKST 622 Query: 289 TLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTR 347 TL +D + NLEI + GS E +L ++ IT G RL + + PL D+ KIN R Sbjct: 623 TLVLDGQSLINLEIFANSFDGSAEGTLFAMLNRCITPFGKRLLRQWVCHPLADAQKINAR 682 Query: 348 LDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG---IRSGINI 404 LD+++ + +++ L PD+ R +SR+ R + +D + +G I +++ Sbjct: 683 LDAVDALNADSTIMDNFSASLSKLPDLERLISRVHANRCKAQDFLKVLEGFEQIEYTVSL 742 Query: 405 LNLFLKNDLPEELRGAVEKL-KKLPQSLEKTLSSMLSDDLPTFKRD----GGFL--RDGA 457 L F E G + +L +P L+S L F RD G L G Sbjct: 743 LKQF------SEGEGVIGQLITSMPD-----LASALEPWKSAFDRDLAKKEGILVPEPGV 791 Query: 458 DASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDL 517 + D ++ D+ K + L K +E + K Y +EV K + Sbjct: 792 EEDFDNSQQEIDECKANLDQLLKKARKELGNNGIVFKDIGKEVYQLEVP--------KKV 843 Query: 518 ESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLD 577 + + + + ++R+ T EL L + A + I E E ++ Sbjct: 844 KVPNTWDQMSATAKVSRYYTPELRKLVRALQEAEETHGQIVREVASRFCVRFDENYKTWL 903 Query: 578 NASQVIAIID--ISIALAILAKEQNYCRPIIDNSTNFIVK--DGRHPIVEKTLKQQSSKP 633 A ++IA +D IS+A A + + CRP+ +V+ + RHP + T+ Sbjct: 904 AAVKIIAQLDCLISLAKASSSLGEPSCRPVFSEGKRTVVEFEELRHPCMLNTVDD----- 958 Query: 634 FIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIV 693 FI ND L + + LLTG N GKST LR + VIMAQ+G Y+P + A + V Sbjct: 959 FIPNDIRLG----GDESNISLLTGANAAGKSTILRMTCIAVIMAQVGCYLPCTSAKLTPV 1014 Query: 694 DKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWA 753 D++ SR+G+ DN+ + +STF VE+ ET IL++AT +S VILDE+GRGT++ DG+++A A Sbjct: 1015 DRIMSRLGANDNIFAAQSTFFVELSETQKILSEATPRSLVILDELGRGTSSYDGVAVAQA 1074 Query: 754 TIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ--VSDSNEGIIFLHKVIPGIAD 811 + + C G ATH+ L + N ++ V +S++ I FL+K+ G+A+ Sbjct: 1075 VLHDIASRVGCVGFFATHYRSLAKEFEFHPEVQNKRMRIHVDESSKSITFLYKLEEGVAE 1134 Query: 812 HSYGIQVGKLAGLPNTVISRAYDILKTFE 840 S+G+ + G+P+ +I A + +E Sbjct: 1135 GSFGMHCAAMCGIPSKIIDNAEKAAREWE 1163 >gi|116203755|ref|XP_001227688.1| hypothetical protein CHGG_09761 [Chaetomium globosum CBS 148.51] gi|88175889|gb|EAQ83357.1| hypothetical protein CHGG_09761 [Chaetomium globosum CBS 148.51] Length = 1221 Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 237/865 (27%), Positives = 409/865 (47%), Gaps = 84/865 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P +QY +IK D++VF++ G FYEL+ +DA + + + LT R ++ M G Sbjct: 340 SPFEKQYWDIKKKLWDTVVFFKKGKFYELYENDATIGHQLFDLKLTDR-----VNMRMVG 394 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKS-------LVRRNVVRLVTPGT 138 VP + + ++ + + G+++A +Q+ES L + R S ++RR + ++T GT Sbjct: 395 VPESSLDMWVNQFVAKGYKVARVDQMESALGKEMRERDSNAKKADKIIRRELACILTGGT 454 Query: 139 LTEDQLLSPTDSNYLMA----VARIRTEWAIAWIDISTGIFKISTSNHD----RLISDIM 190 L + +L + Y A V + + IA++D +TG F +S D + + + Sbjct: 455 LVDGSMLQDDMATYCAAIKESVVNDKPAFGIAFVDAATGQFFLSEFEDDVDLTKFETFVA 514 Query: 191 RIDPREIIFSEKELSHAEYKSLFETLGNVAVA---QPNVFF---DHSISESRIADYYNIT 244 + PRE++ + LS + L G + +P F D + E Y+ Sbjct: 515 QTSPRELVLEKSRLSTKALRILKNNTGPTTIWNNLKPETEFWGADLARRELECGGYF--- 571 Query: 245 TVDTFGSFSQVEKTAAAA-----AIS-------YIK----KTQMVNKPTIGYPEREDIQS 288 V G+ KT A + AIS Y++ ++++ + Sbjct: 572 -VSEGGAEEVWPKTLAESKDKDLAISAMGGLTHYLRVLMLDRNLLSQGNFAWYNPIHRNG 630 Query: 289 TLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTR 347 TL +D + NLEI T + E +L ++ IT G RLF + + PL ++ KIN R Sbjct: 631 TLILDGQSLINLEIFTNTANNGPEGTLFNLLNRCITPFGKRLFRQWVCHPLCNTQKINER 690 Query: 348 LDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG---IRSGINI 404 LD+++ + ++ + PD+ R +SR+ G P+D + +G I + + Sbjct: 691 LDAVDMLNADRSILQQFSSQMAKMPDLERLISRIHAGACRPQDFVRVLEGFEQIDYTMGL 750 Query: 405 LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRD-GADASLDE 463 L F + G V++L L++ L + T RDG + + G + D Sbjct: 751 LGAFGGGN------GLVDRLIASMPDLKEPLGYWETAFDRTMARDGKLIPEKGIEEDFDN 804 Query: 464 TRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRF 523 +++ ++ K + +L K K K +K Y IEV K ++ + Sbjct: 805 SQNELERIKGELHALLEKQKTALKCKTIKFTDVGKEVYQIEVP--------KAVKVPTNW 856 Query: 524 IHRQTMSNLTRFTTLELIDL--ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQ 581 S + R+ L DL E + T T+S +L E+ S S E A + Sbjct: 857 RQMSATSAVKRYYFRALEDLVRELQETEETHSQILKEVASR--FSKRFDMDYEVWLQAIR 914 Query: 582 VIAIIDI--SIALAILAKEQNYCRPIIDNSTNFIV--KDGRHPIVEKTLKQQSSKPFIAN 637 +IA +D S+A + A CRP+ + +V K+ RHP + ++ FI N Sbjct: 915 IIAQLDCLTSLAKSSSALGVPSCRPVFIDEDRSVVEFKELRHPCMTNSVDD-----FIPN 969 Query: 638 DCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLF 697 D L + K+ LLTG N GKST LR + + VIMAQ+G YVPA A + +D++ Sbjct: 970 DIKLG----GDEAKINLLTGANAAGKSTILRMSCIAVIMAQIGCYVPALSATLTPIDRIM 1025 Query: 698 SRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEY 757 SR+G+ DN+ + +STF VE+ ET IL++AT +S VILDE+GRGT++ DG+++A A + + Sbjct: 1026 SRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVLHH 1085 Query: 758 LHETNRCRGLLATHFHEL-TDLSKSLK-RFHNATLQVSDSNEGIIFLHKVIPGIADHSYG 815 + C G ATH+H L + ++ + R + V ++ + + FL+++ G+A+ S+G Sbjct: 1086 VASHIGCVGFFATHYHSLAAEFAQHPEVRARRMQIDVDEARKRVTFLYRLEDGVAEGSFG 1145 Query: 816 IQVGKLAGLPNTVISRAYDILKTFE 840 + + G+P VI RA + +E Sbjct: 1146 MHCAAMCGIPGRVIDRAEVAAREWE 1170 >gi|125563676|gb|EAZ09056.1| hypothetical protein OsI_31317 [Oryza sativa Indica Group] Length = 1265 Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 266/907 (29%), Positives = 424/907 (46%), Gaps = 140/907 (15%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 +SL +MG FYELF DA + ++ L + +++ D P CG P ++KL K Sbjct: 336 NSLTGGQMGKFYELFEMDAHVGAKELDL------QYMKGDKPHCGFPEKNFELNLEKLAK 389 Query: 101 IGHRIAICEQIESP----LEAKKRGNK-SLVRRNVVRLVTPGTLTEDQ-LLSPTDSNYLM 154 G+R+ + EQ E+P L K+ G K +VRR + +VT GTLTE + LL+ D +YL Sbjct: 390 KGYRVLVIEQTETPEQLDLRRKETGVKDKVVRREICAMVTKGTLTEGESLLANPDPSYLF 449 Query: 155 AVA---RIRTE-------WAIAWIDISTGIFKISTSNHDR----LISDIMRIDPREIIFS 200 +VA + +E + +D+ST F + D L S + I P EII Sbjct: 450 SVAESYQCGSEKDQDGHTIGVCIVDVSTSKFIVGQFQDDAERHGLCSILSEIRPAEIIKP 509 Query: 201 EKELSHAEYKSLFETLGNVAVAQ--PNV-FFDHSISESRIADYYNITTVDTFGSFSQV-- 255 K LS K+L + + P++ F+D + I YY ++DT G+ +Q+ Sbjct: 510 AKMLSPGTEKALNSNTRDPLINNLLPSMEFWDAEKTIHEIKQYY--CSLDTPGAGAQISS 567 Query: 256 --------------EKTAAAAAIS----YIKKTQMVNK--PTIGYPER-------EDIQS 288 +KT A +A+ Y++++ + K P + ER I+ Sbjct: 568 AYLPELLSELIEAGDKTYALSALGGSLFYLRQSLLDEKLLPCAEF-ERLTCSGLTNPIRK 626 Query: 289 TLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTR 347 + +D+AA NLEIL +G +L +++ +TG G RL IA PL + I R Sbjct: 627 HMILDAAALENLEILENARNGGLSGTLYAQLNHCVTGFGKRLLKRWIARPLYERQAILQR 686 Query: 348 LDSINFF--IQNPILINPIQKILKSSPDVPRSLSRL-----KIGRGEPKDIAVIRDGIR- 399 +I F + I +K L PD+ R L+RL K GR K + + D + Sbjct: 687 QSAIATFKGSGHECAIQ-FRKDLSRLPDMERLLARLFSSCDKNGRSS-KSVVLYEDASKR 744 Query: 400 ----------------SGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD-- 441 + +++ D L + K LP +SS+L Sbjct: 745 LLHQFTAALRGCQQMFQACSSISMLTSTDGSSLLNNLLSPGKGLPH-----VSSILDHFR 799 Query: 442 ---DLPTFKRDGGFL-RDGADASLDET----RSLRDQSKRIIASLQLKYAEETKIKNLKI 493 D R+G + +G D D + K+ + Q K ++ +K + + Sbjct: 800 DAFDWSEADRNGRIIPHEGCDPQYDAACIAIEEIESSLKKYLKE-QRKLLSDSSVKYVDV 858 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 + Y +EV+ + + + E + T R+ T E+ +L + ++ A Sbjct: 859 GKDT---YLLEVSENLRGSVPQHYELQS------TKKGFYRYWTPEVKELISELSKAEAE 909 Query: 554 ALLIELESFEILSNAI---IEQSESLDNASQVIAIIDISIALAILAK--EQNYCRPII-- 606 E + IL N I + V+A +D+ I+LAI + E C PII Sbjct: 910 K---EAKLKCILQNLIQLFVGHHSKWRQLVSVVAELDVLISLAIASDFFEGPTCCPIIKE 966 Query: 607 ----DNSTNFIVKDGRHPIVEKTLKQQS--SKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 D++ ++ HP TL+ S S F+ ND + P + + +LTGPNM Sbjct: 967 SYGPDDTPTLHARNLGHP----TLRSDSLGSGSFVPNDIKMGGPGNAS---FIVLTGPNM 1019 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GGKST LRQ L +I+AQ+G+ VPA + +VD++F R+G+ D++ +G+STF+VE++ET Sbjct: 1020 GGKSTLLRQVCLTIILAQIGANVPAESFELSLVDRMFVRMGARDHIMAGQSTFLVELMET 1079 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 AS+L+ AT S V LDE+GRGT+T DG +IA + +EYL +C GL +TH+H L +K Sbjct: 1080 ASVLSSATKNSLVALDELGRGTSTSDGQAIAASVLEYLVHRVQCLGLFSTHYHRLAAENK 1139 Query: 781 SLK-RFHNATLQVSDSNEG---IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 K + ++S G + FL+K+ PG SYG+ V +LAG+P +V+ RA + Sbjct: 1140 DSKVSLCHMACEISKGEGGLEEVTFLYKLTPGSCPKSYGVNVARLAGIPASVLQRANEKS 1199 Query: 837 KTFEKLY 843 FE Y Sbjct: 1200 SDFEASY 1206 >gi|212543423|ref|XP_002151866.1| DNA mismatch repair protein Msh6, putative [Penicillium marneffei ATCC 18224] gi|210066773|gb|EEA20866.1| DNA mismatch repair protein Msh6, putative [Penicillium marneffei ATCC 18224] Length = 1197 Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 239/871 (27%), Positives = 406/871 (46%), Gaps = 90/871 (10%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P +QY EIK D++VF++ G FYEL+ +DA + + + LT R ++ M G Sbjct: 308 SPFEKQYWEIKQKFWDTIVFFKKGKFYELYENDATIGHQLFDLKLTDR-----VNMRMVG 362 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL--EAKKRGNKS--------LVRRNVVRLVT 135 VP + +H+ + + G++IA +Q ES L E ++R +K +++R + ++T Sbjct: 363 VPEMSLDHWANQFVAKGYKIARVDQSESALGKEMRERDDKKAKVGKEDKIIKRELACVLT 422 Query: 136 PGTLTEDQLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFKISTSNHD----RLIS 187 GTL E +L S Y +A+ I + + IA++D +TG F +S D + + Sbjct: 423 AGTLVEGSMLQDDMSTYCVAIKEIILDGLPAFGIAFVDTATGQFYLSEFKDDADMTKFET 482 Query: 188 DIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA---QPNVFF---DHSISESRIADYY 241 + + P+E++ + +S + L G + +P F D ++ E +DY+ Sbjct: 483 FVAQTRPQELLLEKSAVSQKAMRILKNNTGPTTLWNHLKPGKEFWEADIAVRELDASDYF 542 Query: 242 NITTVDTFGSFSQV-----EK----TAAAAAISYIKKTQM------VNKPTIGYPEREDI 286 D ++ QV EK +A A + Y++ ++ + T P R+ Sbjct: 543 VSPDSDNINAWPQVLREAREKENAMSAFGALVQYLRVLKLDRDLISIGNFTWYDPIRK-- 600 Query: 287 QSTLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKIN 345 ++L +D NLEI + G E +L + ++ IT G R+F + + PL D KIN Sbjct: 601 ATSLVLDGQTLINLEIFANSFDGGSEGTLFQLLNRCITPFGKRMFKQWVCHPLVDIDKIN 660 Query: 346 TRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINIL 405 R D+++ + + + L PD+ R +SR+ G + +D + +G + Sbjct: 661 ARFDAVDALNADSTIRDQFSSQLTKMPDLERLISRIHAGACKGQDFLRVLEGFEQIEYTM 720 Query: 406 NLFLKNDLPEELRGA-VEKLKKLPQSLE--KTLSSMLSDDLPTFKRDGGFL--RDGADAS 460 L E L G V + L LE KT L ++ G L G + Sbjct: 721 GLLKDLGSGEGLIGKLVSSMPDLVSPLEYWKTAFDRLK------AKENGILVPEQGIEED 774 Query: 461 LDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESK 520 D +++ +Q R + +L + + + + N Y +EV ++ K Sbjct: 775 FDASQATIEQIHRDLENLLKQARRDLGSTAICYRDNGKEIYQLEVPIKVKNIPKT----- 829 Query: 521 DRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNAS 580 + + R+ EL L ++ A + I E E E+ + Sbjct: 830 --WDQMSATKQVKRYYFPELRALIRKLQEAQETHSQIVKEVAGRFYARFDEDYETWLKSI 887 Query: 581 QVIAIID--ISIALAILAKEQNYCRPIIDNSTNFIVK--DGRHPIVEKTLKQQSSKPFIA 636 +++A +D IS+A A + Q CRP +S +++ + RHP + Q+ FI Sbjct: 888 RIVAQLDCLISLAKASSSLGQPSCRPEFVDSERSVLEFEELRHPCM-----LQNVTDFIP 942 Query: 637 NDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKL 696 ND L DK S + LLTG N GKST LR + VIMAQ+G Y+P A + VD++ Sbjct: 943 NDVQLG--GDKAS--INLLTGANAAGKSTILRMTCVAVIMAQVGCYIPCQSARLTPVDRI 998 Query: 697 FSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIE 756 SR+G+ DN+ + +STF VE+ ET IL++AT +S VILDE+GRGT++ DG+++A A + Sbjct: 999 MSRLGANDNIFAAQSTFFVELSETKKILSEATPKSLVILDELGRGTSSYDGVAVAQAVLH 1058 Query: 757 YLHETNRCRGLLATHFHELT-------DLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGI 809 ++ G ATH+H L ++S R H V D + FL+K+ G+ Sbjct: 1059 HIATHVGSLGFFATHYHSLAAEFENHPEISPKRMRIH-----VDDEERRVTFLYKLEDGV 1113 Query: 810 ADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 A+ S+G+ + G+PN VI A + K +E Sbjct: 1114 AEGSFGMHCASMCGIPNKVIENAENAAKQWE 1144 >gi|15625580|gb|AAL04170.1|AF412834_1 mismatch repair protein Msh6 [Danio rerio] Length = 1369 Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 263/970 (27%), Positives = 425/970 (43%), Gaps = 181/970 (18%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 E+ L +TP MR++ ++KS D+++FY++G FYEL+ DA++ L +T K G Sbjct: 399 EDFLNRTTPGMRRWWQLKSEMFDTVLFYKVGKFYELYHMDAVIGVNELNLTFMK-GTWAH 457 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNK--------SLVRRNV 130 P G + L++ G+++A EQ E+P + R K +V+R V Sbjct: 458 SGFPEIGF-----GRFSDVLVQKGYKVARVEQTETPDMMEARCKKLARPTKFDKVVKREV 512 Query: 131 VRLVTPGTLTE---DQLLSPTDSNYLMAVARIRTE--------WAIAWIDISTGIFKIST 179 R++T GT T D S T S YL+++ E + + +ID S G F I Sbjct: 513 CRIITRGTQTYSVLDGAPSETQSKYLLSIKEKSEEDSTGHGHIYGVCFIDTSVGRFHIGQ 572 Query: 180 SNHDRLISD----IMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQP----NVFFDHS 231 DR S + P ++IF EK E +F+ + ++ + + F+D Sbjct: 573 FQDDRHCSRLRTLVAHYSPAQVIF-EKGNPSIETLKIFKAIVASSLQEGLNAGSQFWDAQ 631 Query: 232 ISESRIA--DYYNITTVDT----------------FGSFSQVEKTAAAAAIS-------Y 266 + +A DY+ + D + S KT A+S Y Sbjct: 632 KTLKVLAEEDYFKESKDDNKKESVLPPALKAMTSECDALSLTPKTGYELALSALGGCMFY 691 Query: 267 IKKTQMVNK------------PTIGYPEREDIQSTLF--------IDSAARSNLEILRTL 306 +KK +V++ P E+ S F +D +NLEIL+ Sbjct: 692 LKKC-LVDQELFSMGNFEEYVPVDVEMEQAGGASCFFAKTNQRMVLDGVTLANLEILQNS 750 Query: 307 S-GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQ 365 S G E +LL+ +D T G RL + I +PL + + I RLD++ + P + + Sbjct: 751 STGGPEGTLLERLDTCCTPFGKRLLKQWICAPLCNPSSIGDRLDALEDLMGAPSQTSEVT 810 Query: 366 KILKSSPDVPRSLSRLKI------GRGEPKDIAVI-RDGIRSGINILNLFLKNDLPEELR 418 +LK PD+ R LS++ G+ P A++ + + S I + + + ++ Sbjct: 811 DLLKKLPDLERLLSKIHSMGTPLKGQDHPDSRAILYEEVVYSKRKIADFLAALEGFKVMK 870 Query: 419 GAVEKLKKLPQSLEKTL------------SSMLSDDLPTFKR-DGGF------------L 453 V ++ + + L+ L + D P KR D F Sbjct: 871 EIVSIMEPVGEGLKSKLLRQVVLLKTENEDGLFPDLSPELKRWDTAFDHQKARTTGVITP 930 Query: 454 RDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVL 513 + G D D+ + + +R + + + KNL Y +EV S V Sbjct: 931 KAGFDPEYDQALNGIKECERDLQDYLDRQKKRLGCKNLSYWGTGRNRYQLEVPES---VS 987 Query: 514 KKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQS 573 ++ L + + R T R++T D+E + EL+S+E +A ++ Sbjct: 988 ERSL--PEEYEVRSTKKGWKRYST---KDIER---------MFSELQSWEDKRDAALKDC 1033 Query: 574 ------------ESLDNASQVIAIIDISIALA---------------ILAKEQNYCRPII 606 + A + +A++D+ +++ L + +Y P + Sbjct: 1034 MRRLFYNFDKNYKDWQTAVECMAVLDVLLSMCRYSQSADGSMARPEMALPGDGSYSAPFL 1093 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGK--------LWLLTGP 658 D ++ RHP V KT FI ND + CP D+ + L+TGP Sbjct: 1094 D------LRGSRHPCVTKTFFGDD---FIPNDIFIGCPGDEEEAQDDAKALAPCVLVTGP 1144 Query: 659 NMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMI 718 NMGGKST +RQ L+VI+AQ+G YVPA + VD++F+R+G++D + SG STF VE+ Sbjct: 1145 NMGGKSTLMRQCGLVVILAQLGCYVPAESLRLTPVDRVFTRLGASDRIMSGESTFFVELS 1204 Query: 719 ETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTD- 777 ETASIL ATN S V+LDE+GRGTAT DG +IA A ++ L E CR L +TH+H L + Sbjct: 1205 ETASILLHATNHSLVLLDELGRGTATYDGTAIASAVVKELSEKICCRTLFSTHYHSLVED 1264 Query: 778 --LSKSLKRFHNATL---QVSD-SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISR 831 +++ H A + + D S E I FL+K I G SYG +LA +P VI Sbjct: 1265 HVQDPAVRLGHMACMVENECEDPSQETITFLYKFIRGACPKSYGFNAARLANIPEDVIQS 1324 Query: 832 AYDILKTFEK 841 + + FE+ Sbjct: 1325 GHKKARDFER 1334 >gi|190359868|sp|A2R1F6|MSH3_ASPNC RecName: Full=DNA mismatch repair protein msh3; AltName: Full=MutS protein homolog 3 Length = 1119 Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 247/906 (27%), Positives = 428/906 (47%), Gaps = 121/906 (13%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLT----------KRGK 75 TPM +Q I+IK + D+++ +G + F +DA +A++ L I Sbjct: 208 TPMEKQVIDIKRKHMDTVLVVEVGYKFRFFGEDARVAAKELSIVCIPGKLRFDEHPSEAS 267 Query: 76 HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLV 134 HL + +PVH + ++++L+ GH++ + QIE + L+A + R + L Sbjct: 268 HLDR-FASASIPVHRLHVHVKRLVAAGHKVGVVRQIETAALKAAGDNRNAPFVRKLTNLY 326 Query: 135 TPGTLTEDQ--LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRI 192 T GT +D L P M A A ++ T N +++ I+ + Sbjct: 327 TKGTYIDDAEGLGGP------MPAASGGASPATGYLLCITETNAKGWGNDEKVQVGIVAV 380 Query: 193 DPR--EIIFSEKELSHAEYKSLFET-LGNVAVAQPNVFFDHSISESRIADYYNITTVDTF 249 P +I++ + E +S ET L ++A + + + S + ++ + + + ++ F Sbjct: 381 QPATGDIVYDDFE--DGFMRSEIETRLLHIAPCELLIVGELSKATEKLVQHLSGSKLNVF 438 Query: 250 GSFSQVE-----KTAAAAAISYIK-------KTQMVN---------KPTIGYPEREDIQS 288 G ++VE KTAAA + S++ KT + + PE+ I Sbjct: 439 GDKTRVERVLKSKTAAAESHSHVSSFYAGKMKTASAADDAQASSLLQKVLNLPEQVTICL 498 Query: 289 TLFIDSAARSNLEILRTLS------GSREQSLLK------------------------TI 318 + I+ LE + L+ SR LL T+ Sbjct: 499 SSMIEHMKEYGLEYVFELTKYFQHFSSRSHMLLNGNTLMSLEIYQNQTDHTTKGSLFWTL 558 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP---ILINPIQKIL-KSSPDV 374 D + T G R+ + + PL D +++ R++++ ++NP +++ ++ +L K D+ Sbjct: 559 DRTQTRFGQRMLRKWVGRPLLDKSRLEERVNAVEE-LKNPEKTVMVERLKGLLGKVKSDL 617 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAV----EKLKKLPQS 430 +SL R+ G+ ++ + +++ I F P + A E + LP Sbjct: 618 EKSLIRIYYGKCTRPELLTV---LQTMQMIAQEFSDVKSPADTGFASTAINEAITCLPTI 674 Query: 431 LEKTLSSMLSDDLPTFKRDG--GFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 LE ++ + ++ K D F R+ +ET + DQ K IAS++ + E + Sbjct: 675 LEDVVAFLDKINMHAAKSDDKYAFFREA-----EETEDISDQ-KLGIASVEHELEEHRSV 728 Query: 489 -------KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELI 541 K ++ K + Y IEV +SSAS+ + ++ ++RF T E+I Sbjct: 729 AGQKLGKKTVEYKSVAGIDYLIEVENSSASIKRVPAS----WVKVSGTKKVSRFHTPEVI 784 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 L + + ++F L I + + ++ Q +A +D IALA +A + Y Sbjct: 785 QLMRQRDQHKEALAAACDQAFISLLADIATKYQPFRDSVQALATLDCLIALATIASQPGY 844 Query: 602 CRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 +P + T V GRHP+VE+ L ++ ND DL D + + L+TGPNMG Sbjct: 845 VKPEYTDHTCIQVDQGRHPMVEQLLLDS----YVPNDIDL----DSDKTRALLVTGPNMG 896 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKS+++RQ ALI IM Q+GSYVPA A +G++D +F+R+G+ DN+ +G STFMVE+ ETA Sbjct: 897 GKSSYVRQVALIAIMGQIGSYVPAQSAKLGMLDAVFTRMGAFDNMLAGESTFMVELSETA 956 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS 781 IL QAT +S VILDE+GRGT+T DG++IA A ++Y+ + R L TH+ L+ + S Sbjct: 957 DILKQATPRSLVILDELGRGTSTHDGVAIAQAVLDYMVRSIRSLTLFITHYQHLSSMVHS 1016 Query: 782 L--KRFHNATLQVSDSNEG----IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI 835 + N ++ ++S G I FL++V G+A SYG+ V +LA LP ++ +A Sbjct: 1017 FADQELRNVHMRFTESGTGTDEEITFLYEVGEGVAHRSYGLNVARLANLPGALLDQARQK 1076 Query: 836 LKTFEK 841 K E+ Sbjct: 1077 SKELEE 1082 >gi|220672960|emb|CAX12876.1| mutS homolog 6 (E. coli) [Danio rerio] Length = 1369 Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 263/970 (27%), Positives = 425/970 (43%), Gaps = 181/970 (18%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 E+ L +TP MR++ ++KS D+++FY++G FYEL+ DA++ L +T K G Sbjct: 399 EDFLNRTTPGMRRWWQLKSEMFDTVLFYKVGKFYELYHMDAVIGVNELNLTFMK-GTWAH 457 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNK--------SLVRRNV 130 P G + L++ G+++A EQ E+P + R K +V+R V Sbjct: 458 SGFPEIGF-----GRFSDVLVQKGYKVARVEQTETPDMMEARCKKLARPTKFDKVVKREV 512 Query: 131 VRLVTPGTLTE---DQLLSPTDSNYLMAVARIRTE--------WAIAWIDISTGIFKIST 179 R++T GT T D S T S YL+++ E + + +ID S G F I Sbjct: 513 CRIITRGTQTYSVLDGAPSETQSKYLLSIKEKSEEDSTGHGHIYGVCFIDTSVGRFHIGQ 572 Query: 180 SNHDRLISD----IMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQP----NVFFDHS 231 DR S + P ++IF EK E +F+ + ++ + + F+D Sbjct: 573 FQDDRHCSRLRTLVAHYSPAQVIF-EKGNPSIETLKIFKAIVASSLQEGLNAGSQFWDAQ 631 Query: 232 ISESRIA--DYYNITTVDT----------------FGSFSQVEKTAAAAAIS-------Y 266 + +A DY+ + D + S KT A+S Y Sbjct: 632 KTLKVLAEEDYFKESKDDNKKASVLPPALKAMTSECDALSLTPKTGYELALSALGGCMFY 691 Query: 267 IKKTQMVNK------------PTIGYPEREDIQSTLF--------IDSAARSNLEILRTL 306 +KK +V++ P E+ S F +D +NLEIL+ Sbjct: 692 LKKC-LVDQELFSMGNFEEYVPVDVEMEQAGGASCFFAKTNQRMVLDGVTLANLEILQNS 750 Query: 307 S-GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQ 365 S G E +LL+ +D T G RL + I +PL + + I RLD++ + P + + Sbjct: 751 STGGPEGTLLERLDTCCTPFGKRLLKQWICAPLCNPSSIGDRLDALEDLMGAPSQTSEVT 810 Query: 366 KILKSSPDVPRSLSRLKI------GRGEPKDIAVI-RDGIRSGINILNLFLKNDLPEELR 418 +LK PD+ R LS++ G+ P A++ + + S I + + + ++ Sbjct: 811 DLLKKLPDLERLLSKIHSMGTPLKGQDHPDSRAILYEEVVYSKRKIADFLAALEGFKVMK 870 Query: 419 GAVEKLKKLPQSLEKTL------------SSMLSDDLPTFKR-DGGF------------L 453 V ++ + + L+ L + D P KR D F Sbjct: 871 EIVSIMEPVGEDLKSKLLRQVVLLKTENEDGLFPDLSPELKRWDTAFDHQKARTTGVITP 930 Query: 454 RDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVL 513 + G D D+ + + +R + + + KNL Y +EV S V Sbjct: 931 KAGFDPEYDQALNGIKECERDLQDYLDRQKKRLGCKNLSYWGTGRNRYQLEVPES---VS 987 Query: 514 KKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQS 573 ++ L + + R T R++T D+E + EL+S+E +A ++ Sbjct: 988 ERSL--PEEYEVRSTKKGWKRYST---KDIER---------MFSELQSWEDKRDAALKDC 1033 Query: 574 ------------ESLDNASQVIAIIDISIALA---------------ILAKEQNYCRPII 606 + A + +A++D+ +++ L + +Y P + Sbjct: 1034 MRRLFYNFDKNYKDWQTAVECMAVLDVLLSMCRYSQSADGSMARPEMALPGDGSYSAPFL 1093 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGK--------LWLLTGP 658 D ++ RHP V KT FI ND + CP D+ + L+TGP Sbjct: 1094 D------LRGSRHPCVTKTFFGDD---FIPNDIFIGCPGDEEEAQDDTKALAPCVLVTGP 1144 Query: 659 NMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMI 718 NMGGKST +RQ L+VI+AQ+G YVPA + VD++F+R+G++D + SG STF VE+ Sbjct: 1145 NMGGKSTLMRQCGLVVILAQLGCYVPAESLRLTPVDRVFTRLGASDRIMSGESTFFVELS 1204 Query: 719 ETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTD- 777 ETASIL ATN S V+LDE+GRGTAT DG +IA A ++ L E CR L +TH+H L + Sbjct: 1205 ETASILLHATNHSLVLLDELGRGTATYDGTAIASAVVKELSEKICCRTLFSTHYHSLVED 1264 Query: 778 --LSKSLKRFHNATL---QVSD-SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISR 831 +++ H A + + D S E I FL+K I G SYG +LA +P VI Sbjct: 1265 HVQDPAVRLGHMACMVENECEDPSQETITFLYKFIRGACPKSYGFNAARLANIPEDVIQS 1324 Query: 832 AYDILKTFEK 841 + + FE+ Sbjct: 1325 GHKKARDFER 1334 >gi|330923791|ref|XP_003300375.1| hypothetical protein PTT_11611 [Pyrenophora teres f. teres 0-1] gi|311325500|gb|EFQ91520.1| hypothetical protein PTT_11611 [Pyrenophora teres f. teres 0-1] Length = 1214 Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 235/869 (27%), Positives = 406/869 (46%), Gaps = 90/869 (10%) Query: 30 RQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVH 89 +QY EIKS D++VF++ G FYEL+ DA + + + LT R ++ M GVP Sbjct: 324 KQYWEIKSKWWDTVVFFKKGKFYELYEKDATIGHQLFDLKLTDR-----VNMRMVGVPEA 378 Query: 90 TANHYIQKLIKIGHRIAICEQIESPL--EAKKRGNKS-------------LVRRNVVRLV 134 + + + + + G+++A +Q+ES L E ++R +K ++RR + ++ Sbjct: 379 SLDMWATQFVAAGYKVARVDQMESALGKEMRERDDKGKTPKKAAGGKENKVIRRELATVL 438 Query: 135 TPGTLTEDQLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFKISTSNHD----RLI 186 T GTL + +L S Y MA+ I + + +A++D +T F++ D + Sbjct: 439 TSGTLVDTGMLQSEMSTYCMAIKEIDRDNLPAFGVAFVDTATAQFQLCEFTDDVDMTKFE 498 Query: 187 SDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA---QPNVFF---DHSISESRIADY 240 + I ++ P E++ + +S + L + +PN F D +I E +Y Sbjct: 499 TLIAQMRPGELLLEKSCVSAKVLRILKNNTPPTTIWNWLKPNKEFWPADIAIRELEANNY 558 Query: 241 YNITTVDTFGSFSQVEK---------TAAAAAISYIKKTQMVNKP--TIGYPEREDI--- 286 + T D ++ V + +A A + Y++ T M+ + T+G + D Sbjct: 559 FESPTEDNIEAWPAVLREAREQELVMSAFGALLQYLR-TLMIERDLVTLGNFQWYDPIRK 617 Query: 287 QSTLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKIN 345 ++L +D + NLEI T GS E +L ++ IT G RL + + PL D+ KIN Sbjct: 618 ATSLVLDGQSLINLEIFANTFDGSTEGTLFAMLNRCITPFGKRLLRQWVCHPLADAAKIN 677 Query: 346 TRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG---IRSGI 402 RLD+++ + +++ L PD+ R +SR+ GR +D + +G I I Sbjct: 678 ARLDAVDALNADSTIMDNFSSSLSKLPDLERLISRVHAGRCRAQDFLKVLEGFEQIEYTI 737 Query: 403 NILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFL--RDGADAS 460 ++L F + G + +L L L+ S R G L G + Sbjct: 738 SLLKQFGNGE------GVIGQLISSMPDLATALAKWTSAFDRNIARKEGLLIPEPGIEED 791 Query: 461 LDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG---YFIEVTSSSASVLKKDL 517 D ++ + K + L K +E ++ N++G Y +EV K + Sbjct: 792 FDNSQERVEACKADLDVLLKKARKELGSNAVQY---NDIGKEIYQLEVP--------KKV 840 Query: 518 ESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLD 577 + + + +TR+ + EL L + A + I E E + Sbjct: 841 KVPKSWDQMSATAKVTRYYSPELRKLVRALQEAQETHGQITREVATRFCQRFDEDYKVWL 900 Query: 578 NASQVIAIID--ISIALAILAKEQNYCRPIIDNSTNFIVK--DGRHPIVEKTLKQQSSKP 633 A ++IA +D IS+A A + + CRP+ + +V+ + RHP + T+ Sbjct: 901 AAVKIIAQLDCLISLAKASASLGEPSCRPVFEEGKRTVVEFEELRHPCMLNTVAD----- 955 Query: 634 FIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIV 693 FI ND L + + LLTG N GKST LR + VI+AQ+G Y+P + A + V Sbjct: 956 FIPNDIRLG----GDGANISLLTGANAAGKSTILRMTCIAVILAQVGCYLPCTSARLTPV 1011 Query: 694 DKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWA 753 D++ SR+G+ DN+ + +STF VE+ ET IL++AT +S VILDE+GRGT++ DG+++A A Sbjct: 1012 DRIMSRLGANDNIFAAQSTFFVELSETQKILSEATPRSLVILDELGRGTSSYDGVAVAQA 1071 Query: 754 TIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ--VSDSNEGIIFLHKVIPGIAD 811 + + C G ATH+ L + N ++ V D ++ I FL+K+ G+A+ Sbjct: 1072 VLHDISTRVGCVGFFATHYRSLAKEFEFHPEVENKRMRIHVDDDSKSITFLYKLEEGVAE 1131 Query: 812 HSYGIQVGKLAGLPNTVISRAYDILKTFE 840 S+G+ + G+P VI A + +E Sbjct: 1132 GSFGMHCAAMCGIPKKVIENAEKAAREWE 1160 >gi|317034255|ref|XP_001396245.2| DNA mismatch repair protein MSH3 [Aspergillus niger CBS 513.88] Length = 1118 Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 249/906 (27%), Positives = 430/906 (47%), Gaps = 122/906 (13%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK---------- 75 TPM +Q I+IK + D+++ +G + F +DA +A++ L I GK Sbjct: 208 TPMEKQVIDIKRKHMDTVLVVEVGYKFRFFGEDARVAAKELSIVCIP-GKLRFDEHPSEA 266 Query: 76 HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLV 134 HL + +PVH + ++++L+ GH++ + QIE + L+A + R + L Sbjct: 267 HLDR-FASASIPVHRLHVHVKRLVAAGHKVGVVRQIETAALKAAGDNRNAPFVRKLTNLY 325 Query: 135 TPGTLTEDQ--LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRI 192 T GT +D L P M A A ++ T N +++ I+ + Sbjct: 326 TKGTYIDDAEGLGGP------MPAASGGASPATGYLLCITETNAKGWGNDEKVQVGIVAV 379 Query: 193 DPR--EIIFSEKELSHAEYKSLFET-LGNVAVAQPNVFFDHSISESRIADYYNITTVDTF 249 P +I++ + E +S ET L ++A + + + S + ++ + + + ++ F Sbjct: 380 QPATGDIVYDDFE--DGFMRSEIETRLLHIAPCELLIVGELSKATEKLVQHLSGSKLNVF 437 Query: 250 GSFSQVE-----KTAAAAAISYIK-------KTQMVN---------KPTIGYPEREDIQS 288 G ++VE KTAAA + S++ KT + + PE+ I Sbjct: 438 GDKTRVERVLKSKTAAAESHSHVSSFYAGKMKTASAADDAQASSLLQKVLNLPEQVTICL 497 Query: 289 TLFIDSAARSNLEILRTLS------GSREQSLLK------------------------TI 318 + I+ LE + L+ SR LL T+ Sbjct: 498 SSMIEHMKEYGLEYVFELTKYFQHFSSRSHMLLNGNTLMSLEIYQNQTDHTTKGSLFWTL 557 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP---ILINPIQKIL-KSSPDV 374 D + T G R+ + + PL D +++ R++++ ++NP +++ ++ +L K D+ Sbjct: 558 DRTQTRFGQRMLRKWVGRPLLDKSRLEERVNAVEE-LKNPEKTVMVERLKGLLGKVKSDL 616 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAV----EKLKKLPQS 430 +SL R+ G+ ++ + +++ I F P + A E + LP Sbjct: 617 EKSLIRIYYGKCTRPELLTV---LQTMQMIAQEFSDVKSPADTGFASTAINEAITCLPTI 673 Query: 431 LEKTLSSMLSDDLPTFKRDG--GFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 LE ++ + ++ K D F R+ +ET + DQ K IAS++ + E + Sbjct: 674 LEDVVAFLDKINMHAAKSDDKYAFFREA-----EETEDISDQ-KLGIASVEHELEEHRSV 727 Query: 489 -------KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELI 541 K ++ K + Y IEV +SSAS+ + ++ ++RF T E+I Sbjct: 728 AGQKLGKKTVEYKSVAGIDYLIEVENSSASIKRVPAS----WVKVSGTKKVSRFHTPEVI 783 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 L + + ++F L I + + ++ Q +A +D IALA +A + Y Sbjct: 784 QLMRQRDQHKEALAAACDQAFISLLADIATKYQPFRDSVQALATLDCLIALATIASQPGY 843 Query: 602 CRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 +P + T V GRHP+VE+ L ++ ND DL D + + L+TGPNMG Sbjct: 844 VKPEYTDHTCIQVDQGRHPMVEQLLLDS----YVPNDIDL----DSDKTRALLVTGPNMG 895 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKS+++RQ ALI IM Q+GSYVPA A +G++D +F+R+G+ DN+ +G STFMVE+ ETA Sbjct: 896 GKSSYVRQVALIAIMGQIGSYVPAQSAKLGMLDAVFTRMGAFDNMLAGESTFMVELSETA 955 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS 781 IL QAT +S VILDE+GRGT+T DG++IA A ++Y+ + R L TH+ L+ + S Sbjct: 956 DILKQATPRSLVILDELGRGTSTHDGVAIAQAVLDYMVRSIRSLTLFITHYQHLSSMVHS 1015 Query: 782 L--KRFHNATLQVSDSNEG----IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI 835 + N ++ ++S G I FL++V G+A SYG+ V +LA LP ++ +A Sbjct: 1016 FADQELRNVHMRFTESGTGTDEEITFLYEVGEGVAHRSYGLNVARLANLPGALLDQARQK 1075 Query: 836 LKTFEK 841 K E+ Sbjct: 1076 SKELEE 1081 >gi|33504503|ref|NP_878280.1| DNA mismatch repair protein Msh6 [Danio rerio] gi|27882481|gb|AAH44350.1| MutS homolog 6 (E. coli) [Danio rerio] Length = 1369 Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 263/970 (27%), Positives = 425/970 (43%), Gaps = 181/970 (18%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 E+ L +TP MR++ ++KS D+++FY++G FYEL+ DA++ L +T K G Sbjct: 399 EDFLNRTTPGMRRWWQLKSEMFDTVLFYKVGKFYELYHMDAVIGVNELNLTFMK-GTWAH 457 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNK--------SLVRRNV 130 P G + L++ G+++A EQ E+P + R K +V+R V Sbjct: 458 SGFPEIGF-----GRFSDVLVQKGYKVARVEQTETPNMMEARCKKLARPTKFDKVVKREV 512 Query: 131 VRLVTPGTLTE---DQLLSPTDSNYLMAVARIRTE--------WAIAWIDISTGIFKIST 179 R++T GT T D S T S YL+++ E + + +ID S G F I Sbjct: 513 CRIITRGTQTYSVLDGAPSETQSKYLLSIKEKSEEDSTGHGHIYGVCFIDTSVGRFHIGQ 572 Query: 180 SNHDRLISD----IMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQP----NVFFDHS 231 DR S + P ++IF EK E +F+ + ++ + + F+D Sbjct: 573 FQDDRHCSRLRTLVAHYSPAQVIF-EKGNPSIETLKIFKAIVASSLQEGLNAGSQFWDAQ 631 Query: 232 ISESRIA--DYYNITTVDT----------------FGSFSQVEKTAAAAAIS-------Y 266 + +A DY+ + D + S KT A+S Y Sbjct: 632 KTLKVLAEEDYFKESKDDNKKASVLPPALKAMTPECDALSLTPKTGYELALSALGGCMFY 691 Query: 267 IKKTQMVNK------------PTIGYPEREDIQSTLF--------IDSAARSNLEILRTL 306 +KK +V++ P E+ S F +D +NLEIL+ Sbjct: 692 LKKC-LVDQELFSMGNFEEYVPVDVEMEQAGGASCFFAKTNQRMVLDGVTLANLEILQNS 750 Query: 307 S-GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQ 365 S G E +LL+ +D T G RL + I +PL + + I RLD++ + P + + Sbjct: 751 STGGPEGTLLERLDTCCTPFGKRLLKQWICAPLCNLSSIGDRLDALEDLMGAPSQTSEVT 810 Query: 366 KILKSSPDVPRSLSRLKI------GRGEPKDIAVI-RDGIRSGINILNLFLKNDLPEELR 418 +LK PD+ R LS++ G+ P A++ + + S I + + + ++ Sbjct: 811 DLLKKLPDLERLLSKIHSMGTPLKGQDHPDSRAILYEEVVYSKRKIADFLAALEGFKVMK 870 Query: 419 GAVEKLKKLPQSLEKTL------------SSMLSDDLPTFKR-DGGF------------L 453 V ++ + + L+ L + D P KR D F Sbjct: 871 EIVSIMEPVGEDLKSKLLRQVVLLKTENEDGLFPDLSPELKRWDTAFDHQKARTTGVITP 930 Query: 454 RDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVL 513 + G D D+ + + +R + + + KNL Y +EV S V Sbjct: 931 KAGFDPEYDQALNGIKECERDLQDYLDRQKKRLGCKNLSYWGTGRNRYQLEVPES---VS 987 Query: 514 KKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQS 573 ++ L + + R T R++T D+E + EL+S+E +A ++ Sbjct: 988 ERSL--PEEYEVRSTKKGWKRYST---KDIER---------MFSELQSWEDKRDAALKDC 1033 Query: 574 ------------ESLDNASQVIAIIDISIALA---------------ILAKEQNYCRPII 606 + A + +A++D+ +++ L + +Y P + Sbjct: 1034 MRRLFYNFDKNYKDWQTAVECMAVLDVLLSMCRYSQSADGSMARPEMALPGDGSYSAPFL 1093 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGK--------LWLLTGP 658 D ++ RHP V KT FI ND + CP D+ + L+TGP Sbjct: 1094 D------LRGSRHPCVTKTFFGDD---FIPNDIFIGCPGDEEEAQDDTKALAPCVLVTGP 1144 Query: 659 NMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMI 718 NMGGKST +RQ L+VI+AQ+G YVPA + VD++F+R+G++D + SG STF VE+ Sbjct: 1145 NMGGKSTLMRQCGLVVILAQLGCYVPAESLRLTPVDRVFTRLGASDRIMSGESTFFVELS 1204 Query: 719 ETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTD- 777 ETASIL ATN S V+LDE+GRGTAT DG +IA A ++ L E CR L +TH+H L + Sbjct: 1205 ETASILLHATNHSLVLLDELGRGTATYDGTAIASAVVKELSEKICCRTLFSTHYHSLVED 1264 Query: 778 --LSKSLKRFHNATL---QVSD-SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISR 831 +++ H A + + D S E I FL+K I G SYG +LA +P VI Sbjct: 1265 HVQDPAVRLGHMACMVENECEDPSQETITFLYKFIRGACPKSYGFNAARLANIPEDVIQS 1324 Query: 832 AYDILKTFEK 841 + + FE+ Sbjct: 1325 GHKKARDFER 1334 >gi|157130502|ref|XP_001661901.1| DNA mismatch repair protein muts [Aedes aegypti] gi|108871885|gb|EAT36110.1| DNA mismatch repair protein muts [Aedes aegypti] Length = 1130 Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 252/932 (27%), Positives = 431/932 (46%), Gaps = 147/932 (15%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 E L + TP MRQ+ E+K + D ++F+++G FYEL+ DA + LG + K Sbjct: 203 ESFLGTLTPAMRQWWELKCRHMDCVLFFKVGKFYELYHMDATVGVEELGFSYMK------ 256 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESP--LEAKKRGNKS------LVRRNV 130 + G P L+ G ++A EQ E+P ++ + R NK+ +V+R + Sbjct: 257 GEFAHSGFPEQAYERMATLLVDKGFKVARVEQTETPDMMQERCRKNKTNSKYDKVVKREI 316 Query: 131 VRLVTPGTLTEDQLLSPT---DSNYLMAVA-RIRTE----WAIAWIDISTGIFKISTSNH 182 ++ GT Q + T Y++A+ RI+ E + + +ID S G+F + Sbjct: 317 CQVSLKGTEVFGQQVHLTLNHQPKYMLAITERIKGEVGSRYGVCFIDTSLGVFHVGEFED 376 Query: 183 D----RLISDIMRIDPREIIFSEKELSHAEYKSLFET-LGNV---AVAQPNVFFDHSISE 234 D RL++ + P ++ E+ + A + +F+T L + A+ + F+ + Sbjct: 377 DSQGSRLLTLLSHYAP-ALVLQERNVVSAATQQIFKTVLAGIRKEALTNESQFWSAERTL 435 Query: 235 SRIAD-YYNITTVDTFGSFSQVEKT---------------------AAAAAISYIKKT-- 270 +A+ +Y +T D + +V ++ A I Y+K+ Sbjct: 436 KYLAENFYGGSTDDQNSKWPEVIRSLLDKSDHLGLTPDGNFKLALKALGGCIWYLKRCLL 495 Query: 271 --QMVNKPT-IGYPEREDIQST-----------LFIDSAARSNLEILRTLSGSREQSLLK 316 Q+++ + + Y +D+++ + +DS +NL I EQSL+ Sbjct: 496 DQQIISLASFVMYIPPDDVETCKNLRIVNSNRFMVLDSVTLNNLRITEG-----EQSLVN 550 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D+ T G RL I SP + I R +++ I++ L+ +++IL PD+ R Sbjct: 551 RMDHCCTKFGKRLLHHWICSPSCERDVIVQRQEAVTELIEDVSLLQDVRQILGELPDLER 610 Query: 377 SLSRLK-IGRGE-----PKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS 430 L+++ G E P A++ + G + F+ L+G L KLP+ Sbjct: 611 MLAQIHTFGNAERSKNHPDGRAILYEEQTYGKKKIQDFINT-----LKG-FGTLTKLPEL 664 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADA------SLDETRSLRDQSKRIIASLQLKY-A 483 K S +L T +R G F D AD + D ++L+D L +Y A Sbjct: 665 FGKVSSKLLVQLTQTSERGGSF-PDMADKIRFFDEAFDHEQALKDGVIAPGEGLDAEYDA 723 Query: 484 EETKIKNL-------KIKHNNNLG------------YFIEVTSSSASVLKKDLESKDRFI 524 +IKN+ K K G + +E+ S+A KK Sbjct: 724 VHKEIKNILEELEEYKRKQEKYFGCKIAFFGTDKKRFQLEIPESAA---KKANSGYTLEG 780 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQ----SESLDNAS 580 H++ + + R+ T E + R+ + ++ + LS I E+ E Sbjct: 781 HKKGKNGVKRYHTDETREFLKRMMQTEDQRKMV----LKDLSRRIFEKFSSSYEMWRTCI 836 Query: 581 QVIAIIDISIALAILAK-EQNYCRP-IIDNSTN--FIVKDGRHPIVEKTLKQQSSKPFIA 636 + +D+ +LA A+ E N C P I+D+S F +++G HP V S+ +I Sbjct: 837 DLTGTLDVLTSLAEYARSEGNMCVPEILDDSAGQVFELEEGIHPCV------SDSENYIP 890 Query: 637 NDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKL 696 N ++ L LLTGPN+GGKST +RQ ++ +MAQ+GS +PA + ++D++ Sbjct: 891 NGVNIG----GEGAPLVLLTGPNIGGKSTMMRQVGILAVMAQIGSRIPAESCRMTLIDRI 946 Query: 697 FSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIE 756 F+R+G+ D++ +G STF+VE+ ET++IL AT +S V+LDE+GRGTAT DG SIA A + Sbjct: 947 FTRLGANDDIMAGHSTFLVELNETSTILKHATRKSLVLLDELGRGTATYDGTSIAGAVVN 1006 Query: 757 YLHETNRCRGLLATHFHELTD--LSKSLKRFHNATLQVSD------SNEGIIFLHKVIPG 808 +L + +CR + +TH+H L D + S R + V + + E + FL+K G Sbjct: 1007 FLADL-KCRSMFSTHYHNLVDNFSTDSRVRLGHMACMVENEDDEDPTQETVTFLYKYADG 1065 Query: 809 IADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 SYG KLAG+P +I RA+++ KT E Sbjct: 1066 ACPKSYGFNAAKLAGMPACIIKRAHELSKTVE 1097 >gi|156549300|ref|XP_001600292.1| PREDICTED: similar to DNA mismatch repair protein muts [Nasonia vitripennis] Length = 1151 Score = 274 bits (700), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 258/928 (27%), Positives = 420/928 (45%), Gaps = 147/928 (15%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 L TP MRQ+ +KS + D ++F+++G FYEL+ DA+ L +T RG + Sbjct: 227 LDKQTPAMRQWWVLKSDHYDCVLFFKVGKFYELYHMDAVTGVNELSLTFM-RG-----EF 280 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNK--------SLVRRNVVRL 133 G P + LI+ G+++A EQ E+P +R K +V+R + ++ Sbjct: 281 AHSGFPEIAYGRFSASLIERGYKVARIEQTENPEMMSQRCAKMGKTTKFDKVVKREICQI 340 Query: 134 VTPGT---LTEDQLLSPTDSNYLMAVARIR------TEWAIAWIDISTGIFKISTSNHDR 184 T GT +D S S YL+++ + + + + +ID + G F + DR Sbjct: 341 STKGTRVYTAQDAEASAPTSTYLLSIIEKQERNQNISSYGVCFIDTTIGDFNLGQFQDDR 400 Query: 185 LISDIMRI----DPREIIFSEKELSHAEYKSLFETL-GNVAVA-QPNVFFDHSISESRI- 237 S ++ + P +I+ LS K L L G + A Q V F S + Sbjct: 401 CNSRLLTLLAHYPPAHVIYERNNLSQTTLKILNNLLPGAMKEALQKEVQFWSSTKVLNVL 460 Query: 238 --ADYYN----------------ITTVDTFGSFSQVEKTAAAAAIS---YIKKTQMVNKP 276 ADY+ + D+ G EK A A+ Y+ K ++ Sbjct: 461 HEADYFKNEEDSSFSWPKGLEPYLNDGDSLGLTPLEEKQLAVNALGGCVYLLKNYQLDHQ 520 Query: 277 TIGY--------------PERED---IQSTLFIDSAARSNLEILRTLSGSREQSLLKTID 319 + E+ D + + +D+ +NL +L E SL+KT+D Sbjct: 521 LLAQGRFKTYVPPDFSVNAEKSDGTKLAYNMVLDAMTITNLRVL-----GNEGSLIKTLD 575 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 T G RL E + P + I R ++I I NP ++ ++ L PD+ R LS Sbjct: 576 NCCTAFGKRLLREWVCRPSCRKSVIVERQNAITELIDNPDVVQEVRSKLSGLPDLERLLS 635 Query: 380 RLKIG------RGEPKDIAVIRDG-------IRSGINILNLFLKNDLPEELRGAVEKLKK 426 ++ + R P A++ +G I I LN F E++ ++K K Sbjct: 636 KIHVQGNAAKLRNHPDGRAIMFEGPAYSKKTIVDFITALNGF------EDILKLIKKFSK 689 Query: 427 LPQSLEKTLSSM--------LSDDLPTFK--------RDGGFL--RDGADASLDET-RSL 467 L + + L + L FK + GF+ + G D D L Sbjct: 690 FTNPLINKCTQLEPEGDFPELRETLDHFKTAFNHEEAKKEGFIVPKHGVDREYDAVLMEL 749 Query: 468 RDQSKRIIASLQLKYAEETKIKNLKIKH--NNNLGYFIEVTSSSASVLKKDLESKDRFIH 525 D K + + L+ ++ K ++IK N+ + IEV S + E + Sbjct: 750 ADIKKELDSYLE----KQRKHFGVQIKFCGNDKKRFQIEVPESQIKKVGSGYELQG---- 801 Query: 526 RQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAI 585 + R+ T E DL R A + +S + +Q + NA+ IA+ Sbjct: 802 --SRKGFKRYYTEESKDLLARQIAAEEQKDKVLKDSNRKIFAKFSDQYDKWSNATYNIAV 859 Query: 586 IDISIALAILAKEQNYCRPIIDNSTN----FI-VKDGRHPIVEKTLKQQSSKPFIANDCD 640 +D I+LA A+ C P I + T+ FI +++G+HP + S+ FI ND Sbjct: 860 LDCLISLAEYARTCVTCIPTIFDDTDDQGIFIEIREGKHPCI-------VSENFIPNDTV 912 Query: 641 LSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRV 700 ++ + L +LTGPNMGGKST +RQ LI IMAQ+G +VPA+ ++ +VD++F+R+ Sbjct: 913 IAT---AEAAPLIILTGPNMGGKSTLMRQVGLITIMAQIGCHVPATDCNLTLVDRIFTRL 969 Query: 701 GSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHE 760 G+ D++ +G+STF+VE+ ET++IL AT S V+LDE+GRGT+T DG +IA + +E L + Sbjct: 970 GANDDIMAGQSTFLVELSETSAILQHATKYSLVLLDELGRGTSTYDGTAIAASVVEALTK 1029 Query: 761 TNRCRGLLATHFHELTD---LSKSLKRFHNATLQVSD-----SNEGIIFLHKVIPGIADH 812 +CR L +TH+H L + ++K++ H A + SD S E + FL+K+ G Sbjct: 1030 I-QCRTLFSTHYHTLVEDYKMNKNVTLAHMACMVESDDEDQISEENVTFLYKLSEGACPK 1088 Query: 813 SYGIQVGKLAGLPNTVISRAYDILKTFE 840 SYG +LAG+P ++ RA I E Sbjct: 1089 SYGFNAARLAGVPASITKRAQSIATKLE 1116 >gi|296418664|ref|XP_002838949.1| hypothetical protein [Tuber melanosporum Mel28] gi|295634935|emb|CAZ83140.1| unnamed protein product [Tuber melanosporum] Length = 1032 Score = 273 bits (699), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 234/851 (27%), Positives = 395/851 (46%), Gaps = 74/851 (8%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P +QY EIKS D++VF++ G FYEL+ DDA + R + LT R ++ M G Sbjct: 169 SPFEKQYWEIKSRLYDTVVFFKKGKFYELYEDDATIGHREFDLKLTDR-----VNMRMVG 223 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL--EAKKRGNKS-----LVRRNVVRLVTPGT 138 VP + + + + I G++IA +Q E+ L E +++ K+ ++RR + ++T GT Sbjct: 224 VPESSLDMWAAQFIAKGYKIARVDQKETALGKEMREKCGKAGKEEKIIRRELACVLTGGT 283 Query: 139 LTEDQLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFKISTSNHD----RLISDIM 190 L ++ +L + Y +A+ E + IA++D +TG F +S D + + + Sbjct: 284 LVDESMLQDEMATYCVAIKESFREKEPSFGIAFVDTATGEFSLSEFEDDFDLTKFETFLA 343 Query: 191 RIDPREIIFSEKELSHAEYKSL-----FETLGNVAVAQPNVFFDHSISESRIADYYNITT 245 +I PRE+I + LS + L T+ N +P V F + R + + Sbjct: 344 QIRPRELIIEKGFLSSQSTRLLKNNTSLNTIWNKL--KPGVEFWEGSTTVR-----ELVS 396 Query: 246 VDTFGSFSQVEKTAAAAAISYIKKTQMVNKPT---IGYPEREDIQSTLFIDSAARSNLEI 302 D FG + ++ A+ +K+ ++ + Y + I L + NLEI Sbjct: 397 KDYFGESASKDRKGWPQALEEVKEKELAMSALGALLCYLQTLKIDRELTL-----LNLEI 451 Query: 303 LRTLS-GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILI 361 S G +L ++ IT G R+F + PL DS KIN RLD++ N Sbjct: 452 FANSSDGGPTGTLFSLLNRCITPFGKRMFKLWVCHPLADSDKINARLDAVESLNSNNGFQ 511 Query: 362 NPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG---IRSGINILNLF-LKNDLPEEL 417 + L PD+ R +SR+ G D + +G IR I+ + L+ + L +L Sbjct: 512 DAFVTHLNKMPDLERLISRIHAGSSRATDFLRVLEGFEQIRDAIDEITLYSVGGGLIGQL 571 Query: 418 RGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRD-GADASLDETRSLRDQSKRI-I 475 ++ LK+ + E D K G + + G + D ++ + + + + Sbjct: 572 LTSMPDLKRSLKQWEAAF------DREKAKSQGLLVPERGVELDFDTSQDVIEDIINVEL 625 Query: 476 ASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRF 535 SL +Y K +++K + Y IEV A + K + + RF Sbjct: 626 ESLLTEYKSSLKSRDIKYTDSGKEIYLIEVPVKFARNIPKS------WTQMSGTQKVKRF 679 Query: 536 TTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIID--ISIALA 593 + E+ L + A + I E ++ A +++A +D +S+A + Sbjct: 680 YSPEVKKLVRSLQEAQETHSQIVKEVAGRFYERFDRDYQTWLGAVKIVANLDCLLSLARS 739 Query: 594 ILAKEQNYCRPIIDNSTNFIVK--DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGK 651 + + CRP ++ + RHP + ++ FI ND L +S K Sbjct: 740 STSLGETSCRPTFVEGERSVLDFTELRHPCMVSSVDD-----FIPNDIQLG----GDSPK 790 Query: 652 LWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRS 711 L LLTG N GKST LR + VIMAQ+G +VP+ A + VD++ SR+G+ DN+ + +S Sbjct: 791 LGLLTGANAAGKSTVLRMTCVGVIMAQIGCFVPSKSARLTPVDRIMSRLGANDNIFAAQS 850 Query: 712 TFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATH 771 TF VE+ ET IL +AT S VILDE+GRGT++ DG+++A + + ++ C G ATH Sbjct: 851 TFFVELSETKKILAEATPHSLVILDELGRGTSSYDGVAVAQSVLHHVATQIGCLGFFATH 910 Query: 772 FHELTDLSKSLKRFHNATLQ--VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVI 829 +H L +Q V + N I FL+K+ G+A+ S+G+ + G+ +I Sbjct: 911 YHSLASEFIGHPEIQPKRMQIHVDEENRDITFLYKLEAGVAEGSFGMHCAAMCGINKRII 970 Query: 830 SRAYDILKTFE 840 RA D ++FE Sbjct: 971 DRAEDAARSFE 981 >gi|260223175|emb|CBA33474.1| DNA mismatch repair protein mutS [Curvibacter putative symbiont of Hydra magnipapillata] Length = 809 Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 188/631 (29%), Positives = 311/631 (49%), Gaps = 32/631 (5%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 L TPMM+QY+ +K+ PD+L+FYRMGDFYE+F+ DA A+R L IT+T RG+ G+ + Sbjct: 23 LDQHTPMMQQYLGLKAAYPDTLLFYRMGDFYEMFYADAEKAARILDITVTTRGQSAGQPV 82 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 M GVP H+ Y+ KLI+ G +AICEQ + K V R VVR+VTPGTLT+ Sbjct: 83 VMAGVPFHSMEGYLAKLIRHGESVAICEQT-----GEVGATKGPVERKVVRVVTPGTLTD 137 Query: 142 DQLLSPTDSNYLMAVAR-IRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 +LLS + LMAV + R +AW+ ++ G+ ++ D + + RI P E+ +S Sbjct: 138 AELLSEKTESMLMAVHQGPRNRCGLAWLSVTQGVVFLAECTPDEVPDWVSRIAPSELTYS 197 Query: 201 EKELSHAE--YKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEK 257 + E K L A+P FD ++ + ++ D ++ ++ + Sbjct: 198 AGCTTSFEDRIKRLRHGTAVYLTARPEWQFDSALGQRKLLDALQAASLTSWNAQELALAH 257 Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA A I Y + TQ I + + + + + + R NLE+++TL G +L Sbjct: 258 AAAGALIGYAEHTQGRALTHIHSVQVQRDDALIDLPATTRRNLELVQTLRGEDSPTLFSL 317 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D +TG G RL + PL + T+ RL +I N + ++ LK DV R Sbjct: 318 LDTCMTGMGSRLLKRWLLEPLRERTEAQHRLLAIATLRNN--IWQTLRSQLKGCADVERI 375 Query: 378 LSRLKIGRGEPKDIAVIRDGIRS------GINILNLFLKNDLPEELRGAVEKLKKLPQSL 431 +R+ + + P+++ + ++ + L +L + + L+ E + L +++ Sbjct: 376 TARIALRQVRPRELVALVQTLQKTELLAHNLRALEGYLAH-ICSHLQPPAEAIALLGRAI 434 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNL 491 ++++ RDGG + DG DA LDE R+++ + L+++ T I NL Sbjct: 435 APEPAALV--------RDGGVIADGFDADLDELRAIQTNCDAFLLDLEVREKARTGIANL 486 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 +++ N G+FIEVT+ + +D + RQT+ N RF T EL E++ +A Sbjct: 487 RVQFNKVHGFFIEVTTGQVDKVPED------YRRRQTLKNAERFITPELKAFEDKALSAQ 540 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN 611 AL E FE + + + +L +Q +A +D AL + ++ P Sbjct: 541 ERALSREKWLFEQVLDQLQAHIPALTAVAQSLAALDTLCALTERSLTLDWNAPQFVTEPC 600 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLS 642 + GRHP+V+ L + SS FIAND L Sbjct: 601 IDITQGRHPVVQARLAELSSGNFIANDTRLG 631 >gi|312214755|emb|CBX94709.1| hypothetical protein [Leptosphaeria maculans] Length = 1288 Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 231/870 (26%), Positives = 407/870 (46%), Gaps = 86/870 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P RQY EIKS D++VF++ G FYEL+ DA + + + LT R ++ M G Sbjct: 396 SPFERQYWEIKSKFWDTIVFFKKGKFYELYEKDATIGHQLFDLKLTDR-----VNMRMVG 450 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEA----------KKRGNKSL---VRRNVVR 132 VP + + + + + GH++A +Q+ES L K +G+K L +RR + Sbjct: 451 VPEASLDLWAAQFVANGHKVARVDQMESALAKEMRERDDVGEKSKGSKKLDKVIRRELAA 510 Query: 133 LVTPGTLTEDQLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFKISTSNHD----R 184 ++T GTL + +L S Y MAV I + + +A++D +T F++ D + Sbjct: 511 VLTSGTLVDAGMLQSDMSTYCMAVKEIDRDNLPAFGVAFVDTATAQFQLCEFTDDIDMTK 570 Query: 185 LISDIMRIDPREIIFSEKELSHAEYK---------SLFETLGNVAVAQPNVFFDHSISES 235 + I ++ P E++ + LS + +++ TL + P D +I E Sbjct: 571 FETLIAQMRPGELLLEKSCLSAKAMRILKNNTAPSTIWNTLKPIKEFWPA---DTTIREI 627 Query: 236 RIADYYNITTVDTFGSFSQVEK---------TAAAAAISYIKKTQMVNK-PTIGYPERED 285 +Y+ T ++ V + +A A + Y++ ++ T+G + D Sbjct: 628 DANNYFESPTEHNIEAWPPVLREAREQELVMSAFGALLQYLRTLKIERDLVTLGNFQWYD 687 Query: 286 I---QSTLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDS 341 ++L +D + NLE+ T GS E +L ++ IT G RL + + PL D+ Sbjct: 688 PIRKATSLVLDGQSLINLEVFANTFDGSSEGTLFAMLNRCITPFGKRLLRQWVCHPLADA 747 Query: 342 TKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG---I 398 KIN RLD+++ + +++ L PD+ R +SR+ R +D + +G I Sbjct: 748 QKINARLDAVDALNADSTVMDSFSSSLSKLPDLERLISRVHALRCRAQDFLKVLEGFEQI 807 Query: 399 RSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD-DLPTFKRDGGFLRD-G 456 I++L F + G + +L L LS S D K++G + + G Sbjct: 808 EYTISLLRQFGDGE------GVIGQLISSMPDLNTALSKWKSAFDRNVAKKEGILVPELG 861 Query: 457 ADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKD 516 + D + + + + + L K ++ + + N +EV K Sbjct: 862 IEEDFDNSLAEIESCRADMDVLLKKARKDLGCNTICFRDNGKEICQLEV--------PKK 913 Query: 517 LESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESL 576 ++ + + +TR+ + EL L ++ A I E E ++ Sbjct: 914 VKVPSSWDQMSATAKVTRYYSPELRKLVRKLQEAQEIHGQITREVATRFCKRFDEDYKTW 973 Query: 577 DNASQVIAIID--ISIALAILAKEQNYCRPIIDNSTNFIVK--DGRHPIVEKTLKQQSSK 632 A ++IA +D IS+A A + + CRP+ + +++ + RHP + T+ Sbjct: 974 LAAVKIIAQLDCLISLAKASASLGEPSCRPVFEEGDRTVIQLEELRHPCMLNTVGD---- 1029 Query: 633 PFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGI 692 FI ND L ++ + LLTG N GKST LR + VI+AQ+G Y+P + A + Sbjct: 1030 -FIPNDIKLG----GDTANISLLTGANAAGKSTILRMTCIAVILAQVGCYLPCTSARLMP 1084 Query: 693 VDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAW 752 VD++ SR+G+ DN+ + +STF VE+ ET IL++AT +S VILDE+GRGT++ DG+++A Sbjct: 1085 VDRIMSRLGANDNIFAAQSTFFVELSETQKILSEATPRSLVILDELGRGTSSYDGVAVAQ 1144 Query: 753 ATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ--VSDSNEGIIFLHKVIPGIA 810 A + + C G ATH+ L + N ++ V D ++ I FL+K+ G+A Sbjct: 1145 AVLHDISTRVGCVGFFATHYRSLAKEFEFHPEVQNKRMRIHVDDDSKSITFLYKLEEGVA 1204 Query: 811 DHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + S+G+ + G+P+ VI A + +E Sbjct: 1205 EGSFGMHCAAMCGIPSKVIQTAEKAARKWE 1234 >gi|225561909|gb|EEH10189.1| MutS2 protein [Ajellomyces capsulatus G186AR] Length = 999 Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 149/364 (40%), Positives = 215/364 (59%), Gaps = 11/364 (3%) Query: 476 ASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTR- 534 + L K E NL +K LG+ + + AS + R + + S TR Sbjct: 620 SELTKKLREAAGTDNLNLKWTPGLGHIVHMKGVKASQQSVEALGATRTV---SSSKSTRS 676 Query: 535 FTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAI 594 F L RI +A L E FE L A+I L + V+ +D++ + A Sbjct: 677 FYLSSWSQLGARIDDAKFHILSEEQRIFEELRQAVILNLVKLRRNAAVLDELDVACSFAR 736 Query: 595 LAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWL 654 LA+EQ RP+++NS + GRHP V+ L++Q +PF++NDC + ++WL Sbjct: 737 LAEEQQMVRPVVNNSKCHKIVGGRHPTVKLGLEEQG-RPFVSNDCFIG-----EQERIWL 790 Query: 655 LTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFM 714 +TGPNMGGKSTFLRQNALI I+AQ+GS+VPA YA IG+VD++FSR+G+AD+L +STFM Sbjct: 791 ITGPNMGGKSTFLRQNALITILAQVGSFVPAEYAEIGVVDQIFSRIGAADDLFRDQSTFM 850 Query: 715 VEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHE 774 VEM+ETA+IL AT +SFVI+DE+GRGT DG ++ +A + +LH N+CR L ATHFH Sbjct: 851 VEMLETATILKSATTRSFVIMDEVGRGTTPEDGTAVGFACLHHLHNINQCRTLFATHFHA 910 Query: 775 LTDLSKSLKRFHNATLQV-SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAY 833 L D++ + V DS+ F+HK+ G+ S+ ++V +LAGLP+ I A Sbjct: 911 LADMTAQYEHLGRYCTDVKEDSSGSFSFVHKLRRGVNRESHALKVARLAGLPDVAIDVAK 970 Query: 834 DILK 837 D+L+ Sbjct: 971 DVLR 974 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 103/399 (25%), Positives = 194/399 (48%), Gaps = 33/399 (8%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 + ++ R+G+FYEL+F+ A + L + L ++ G +PM G P + +++ L++ Sbjct: 93 NCVLLTRVGNFYELYFEQAEEYATLLNLKLAQKKTSAGA-VPMAGFPFFQLDRFLKILVQ 151 Query: 101 -IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAV--A 157 +AI E+ + + K + R V R+VTPGTL +++ + P ++N+L+++ A Sbjct: 152 DFNKYVAISEEFANDVVGKAKSGGLQFDRKVARIVTPGTLIDEKFMDPYENNFLLSIYLA 211 Query: 158 RIRTE------------------WAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 +R+E ++W+D+STG F + L S + RI REI+ Sbjct: 212 IVRSEDTEIVSPEQHSSISSSQPIGLSWLDLSTGDFFTQQTTAQMLPSALARISAREIVI 271 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESR-IADYYNI----TTVDTFGSFSQ 254 ++ + + L +G F SE R ++++ +I ++ +F+ Sbjct: 272 -DQNVGAKIRQELQAVVGQDKQHLITSF--RCPSEMRTLSEWGSIFESSIPLEVASTFTA 328 Query: 255 VEKTAAAAAISYIK-KTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQ 312 E A + Y++ +TQ V K + P R+ + ++ ID + LEIL T G + Sbjct: 329 EETAACNILLEYVQVQTQGV-KMKLQAPRRKHLDESMSIDRNSLRGLEILETARDGLGKG 387 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 SLL + + T +G RL +R+ SP IN RL+ ++ F+ + L + +LK S Sbjct: 388 SLLHAVRRTSTKSGARLLRDRLTSPSASLHVINERLNLVSKFLDDEDLRQNVILLLKRSF 447 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN 411 D R + + +GRG+P D+ + I++ I ++ L+N Sbjct: 448 DAQRLVQKFSLGRGDPDDLICLSKSIQASQEIKSVLLRN 486 >gi|270684414|ref|ZP_06222805.1| DNA mismatch repair protein mutS [Haemophilus influenzae HK1212] gi|270316249|gb|EFA28200.1| DNA mismatch repair protein mutS [Haemophilus influenzae HK1212] Length = 413 Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 154/420 (36%), Positives = 246/420 (58%), Gaps = 17/420 (4%) Query: 355 IQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP 414 I N L++ +Q L+ D+ R L+R+ + P+D+ +R + I L ++ P Sbjct: 11 ILNFDLVDELQPYLQLVGDMERILARVALRSARPRDLTRLRTALEQ-IPALRAIVQQKTP 69 Query: 415 EELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRI 474 L ++ + + L L + P RDGG + +G A LDE R L D + + Sbjct: 70 PFLTALFSQIADFSEQCD-LLQRALIETPPLLIRDGGVIAEGYHAELDEWRMLSDGATQY 128 Query: 475 IASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTR 534 + +L+ + E T I LKI N GY+I+++ A ++ ++ RQT+ N R Sbjct: 129 LENLEKRERESTGIDTLKIGFNAVHGYYIQISQGQAH------KAPIHYVRRQTLKNAER 182 Query: 535 FTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAI 594 + EL + E+++ + +AL +E + ++ L + ++ +L AS ++ +D+ + LA Sbjct: 183 YIIPELKEYEDKVLKSKGAALALEKQLYDELFDLLLPHLGALQLASLALSELDVLVNLAE 242 Query: 595 LAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWL 654 A NY P + + +++GRHP+VE+ LK PFIAN +L+ ++ L + Sbjct: 243 RADTLNYVMPTFCDEVSVKIENGRHPVVEQVLK----DPFIANPVELN-----HNRHLLV 293 Query: 655 LTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFM 714 +TGPNMGGKST++RQ ALI ++A +GS+VPA A IG +D++F+R+G++D+LASGRSTFM Sbjct: 294 ITGPNMGGKSTYMRQTALITLLAYIGSFVPADSARIGPIDRIFTRIGASDDLASGRSTFM 353 Query: 715 VEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHE 774 VEM E A+IL+QAT QS V++DEIGRGT+T DGLS+AWA E+L + R L ATH+ E Sbjct: 354 VEMTEMANILHQATAQSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKIRSLTLFATHYFE 413 >gi|289620880|emb|CBI52614.1| putative MSH6 protein [Sordaria macrospora] Length = 1230 Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 239/875 (27%), Positives = 409/875 (46%), Gaps = 103/875 (11%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P QY EIK D++VF++ G FYEL+ +DA + + + LT R ++ M G Sbjct: 344 SPFETQYWEIKKNLWDTVVFFKKGKFYELYENDATIGHQLFDLKLTDR-----VNMRMVG 398 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL--EAKKRGNKS-----LVRRNVVRLVTPGT 138 VP + ++ + + G+++A +Q+ES L E ++R K+ ++RR + ++T GT Sbjct: 399 VPESSLEMWVNQFVAKGYKVARVDQMESALGKEMRERDTKAKKADKIIRRELACILTGGT 458 Query: 139 LTEDQLLSPTDSNYLMAVARI----RTEWAIAWIDISTGIFKISTSNHD----RLISDIM 190 L + +L ++ Y A+ + + IA++D +TG F IS D + + + Sbjct: 459 LVDGSMLQDDNAVYCAAIKESVIDDKPAFGIAFVDAATGQFFISEFEDDVDLTKFETFVA 518 Query: 191 RIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITT----V 246 + PRE+I E SH K+L N A P +++ + +++ T + Sbjct: 519 QTSPRELIL---EKSHLSTKALRILKNNTA---PTTIWNYLKMGT---EFWEADTTRREL 569 Query: 247 DTFGSFSQVEK-------------------TAAAAAISYIK----KTQMVNKPTIGYPER 283 D G F E +A A Y++ + ++++ + Sbjct: 570 DCSGYFVSGEGQDEVWPEKLKEARGKDLLMSALGALTQYLRMLKIERNLLSQGNFAWYNP 629 Query: 284 EDIQSTLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDST 342 TL +D + NLEI T +G E +L ++ IT G RLF + + PL + Sbjct: 630 IHRNGTLILDGQSLINLEIFANTANGGPEGTLFHLLNRCITPFGKRLFRQWVCHPLCNIQ 689 Query: 343 KINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG---IR 399 K+N RLD+++ + + D+ R +SR+ G +P D + +G I Sbjct: 690 KLNERLDAVDMLNDDRSFQEQFSSQMSKMADLERLISRIHAGACKPGDFVKVLEGFERID 749 Query: 400 SGINILNLFLK-NDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGAD 458 + +L F N L + L ++ LK+ + + D + G + D Sbjct: 750 RTMELLEAFGGGNGLVDRLIASMPNLKEPLGYWKTAFDRKRARDDKLLIPEQGIVED--- 806 Query: 459 ASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLE 518 D ++ D+ K + L + + K K Y IEV K ++ Sbjct: 807 --FDRSQEELDRIKGELQELLERQKTALRCKTAKFTDVGKEVYQIEVP--------KTVK 856 Query: 519 SKDRFIHRQTMSNLTRFTTLELIDLENRITNA--TNSALLIELES-----FEILSNAIIE 571 ++ S + R+ EL DL + A T+S ++ E+ S F++ Sbjct: 857 VPPKWRQMSATSAVKRYYFKELEDLVRELQEAEETHSQIVKEVASKFFKRFDL------- 909 Query: 572 QSESLDNASQVIAIID--ISIALAILAKEQNYCRPIIDNSTNFIVK--DGRHPIVEKTLK 627 E+ A ++I+ +D IS+A A A Q CRP+ + +V+ + RHP + T+ Sbjct: 910 DYETWLQAIRIISQLDCLISLAKASSALGQPCCRPVFVDDERTVVEFNELRHPCMLNTVD 969 Query: 628 QQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASY 687 FI ND L + + LLTG N GKST LR + + VIMAQ+G YVPA Sbjct: 970 D-----FIPNDIKLG----GDEANIDLLTGANAAGKSTILRMSCIAVIMAQIGCYVPAMS 1020 Query: 688 AHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDG 747 A + VD++ SR+G+ DN+ + +STF VE+ ET IL++AT +S VILDE+GRGT++ DG Sbjct: 1021 ARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDG 1080 Query: 748 LSIAWATIEYLHETNRCRGLLATHFHEL-TDLSKSLK-RFHNATLQVSDSNEGIIFLHKV 805 +++A A + ++ C G ATH+H L T+ + R ++V + N+ I FL+K+ Sbjct: 1081 VAVAQAVLHHVASHIGCVGFFATHYHSLATEFENHPEIRAKRMQIEVDEENKRITFLYKL 1140 Query: 806 IPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 G+A+ S+G+ + G+P+ VI R+ K +E Sbjct: 1141 EDGVAEGSFGMHCAAMCGIPDKVIRRSEVAAKEWE 1175 >gi|302799426|ref|XP_002981472.1| hypothetical protein SELMODRAFT_114224 [Selaginella moellendorffii] gi|300151012|gb|EFJ17660.1| hypothetical protein SELMODRAFT_114224 [Selaginella moellendorffii] Length = 975 Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 247/904 (27%), Positives = 419/904 (46%), Gaps = 122/904 (13%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E +K T RQ+ E K+ + D ++ ++MG FYE+F DA + ++ L + +++ Sbjct: 47 EFVKGLTGGQRQWWEFKAKHMDKVLLFKMGKFYEMFEMDAHVGAQDLDL------QYMKG 100 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESP--LEAKKRGNKS---LVRRNVVRLV 134 + P CG P ++KL++ GHR+ + EQ E+P LE +KR S +VRR + ++ Sbjct: 101 EQPHCGFPEKNYFENVEKLVRKGHRVLVVEQTETPEQLEERKRKTGSKDKVVRREICAII 160 Query: 135 TPGTLTEDQLLSP-TDSNYLMAVARIRTEWA-----IAWIDISTGIFKISTSNHD----R 184 T GT+ + ++S + ++L AV + + +D S +F + D + Sbjct: 161 TKGTMVDSGMISDNAEPSFLAAVTEKADNYGGSLVGLCVVDASRALFMLGQVEDDSARTK 220 Query: 185 LISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQ---PNVFFDHSISESRIADYY 241 L S + + P E++ L+ A K+L E ++Q F+D + I Y Sbjct: 221 LRSILTELRPVELVLPLGLLTDATQKALREQTRKPLISQLVPSKEFWDAEQTTKEIRTSY 280 Query: 242 NITTVDT--------FGSFSQVEKTAAAAAISYIKKT------------QMVNKPTIGYP 281 + V G S+ +A I Y++++ +++ + + Sbjct: 281 GASDVMPTVLQKILELGVSSEPVLSAFGGCICYLRQSLLDGQLLQLGRFELLPGSDLSFE 340 Query: 282 ER----EDIQSTLFIDSAARSNLEILRTLSGSR-EQSLLKTIDYSITGAGGRLFAERIAS 336 E ++ + +DSAA NLEIL S +LL +D+ IT G RL + I Sbjct: 341 HSAAIPEAAEAHMVLDSAALDNLEILENSSNCGVAGTLLCLLDHCITPFGRRLLKQWIVR 400 Query: 337 PLTDSTKINTRLDSI---NFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGE----PK 389 PL + I R +++ +N + + ++ L PD+ R L+RL GE + Sbjct: 401 PLCNIESIVQRQNAVVDMQGVAENAV--SEFRRELSGIPDLERLLARLSANSGENGRHSQ 458 Query: 390 DIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK--------LPQSLEKTLSSMLS- 440 + + D + I +L LRG +KL K LPQ L S+L+ Sbjct: 459 KVVLYEDAAKKQIK--------ELVAALRG-FQKLVKAVSCFGNCLPQLKSARLRSLLTF 509 Query: 441 -DDLPTFKRDGGFLRDGADASLDETR-----------SLRDQSKRIIASL--QLKYAEET 486 P K + D D S E S D +++ + L Q K+ + Sbjct: 510 GKGFPDLKPLLQYFEDSFDWSESEANGRVTGGDHSNLSASDPREKLESYLKSQQKFFKNP 569 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 +I + + + Y +E+ + + D E R + R+ T + +L Sbjct: 570 EISYVTVGKDT---YLLEIPEELHTKVPSDYEL------RSSRKGFCRYWTPRVKELLQE 620 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIID--ISIALAILAKEQNYCRP 604 ++ N + L+ + + +A + ++ +D +SI+ A L + C P Sbjct: 621 LSLCENEKEAALRGILQTLTKRFCDDHDHWLSAIRAVSELDALMSISSARLHMDGMTCLP 680 Query: 605 IIDNSTN-----FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPN 659 ++ F K RHPIV + +S PF+ ND L ++ ++ LLTGPN Sbjct: 681 TFVPASQLAKPVFRAKALRHPIV--AVSTAASTPFVPNDVVL---GGGSNPEVMLLTGPN 735 Query: 660 MGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIE 719 MGGKST LRQ L +I+AQ+GS VPA + + D+LF R+G+ D + +G+STF++E++E Sbjct: 736 MGGKSTLLRQVCLGMILAQIGSEVPAESLELSLTDRLFVRMGAKDQIMTGQSTFLIELLE 795 Query: 720 TASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHEL-TDL 778 TA +L AT SFV LDE+GRGTAT DG +IA A + YL +CRG+ ++H+H+L +D Sbjct: 796 TAVMLRCATQNSFVALDELGRGTATSDGQAIAHAVLHYLAHNVQCRGMFSSHYHKLASDF 855 Query: 779 SK--SLKRFHNATLQVSDSN---EGIIFLHKVIPGIADHSYGIQVGKLAGLP----NTVI 829 + S+ H A +V N E + FL+K+ G SYG+ V ++AG P + + Sbjct: 856 ANDPSVSLCHMAC-KVGGGNNELEAVTFLYKLTSGSCPKSYGVNVARIAGKPKFPSHAHV 914 Query: 830 SRAY 833 SR++ Sbjct: 915 SRSF 918 >gi|50557004|ref|XP_505910.1| YALI0F26499p [Yarrowia lipolytica] gi|49651780|emb|CAG78722.1| YALI0F26499p [Yarrowia lipolytica] Length = 1149 Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 228/860 (26%), Positives = 411/860 (47%), Gaps = 76/860 (8%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 T +QY E+KS +++VF++ G FYEL+ DA +A + L G+ ++ +CG Sbjct: 272 TAFEKQYWEVKSKMWNTVVFFKKGKFYELYERDADIAHSEFDLKLAGGGR---ANMRLCG 328 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSL------VRRNVVRLVTPGTL 139 VP + + IK GH++A +Q ES L + R +L ++R + ++T GTL Sbjct: 329 VPEMSFFSWSNAFIKNGHKVARVDQKESALAKEMRETATLKKEDKVIKRELSLVLTSGTL 388 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISD----IMRIDPR 195 T++++L+ + Y MAV + + A+A++D ++G F S+ D S + +I P Sbjct: 389 TDEKMLTTDLATYCMAVKQEGSRIAVAFVDTASGAFHTSSFEDDADFSKFETLVAQIRPG 448 Query: 196 EIIFSEKELSHAEYKSL-----FETLGNVAVAQPNVFFDHSISESRI--ADYYNITTVDT 248 E++ + + A K L TL N + + F+D + + ++ Y+ +D Sbjct: 449 EVLLEKGIIDKAVVKILKRNTTINTLWNYLIPKAE-FWDATTAMEQLTRGKYFEAEDLDD 507 Query: 249 FGSFSQVEKT--------AAAAAISYIKKTQMVNKPTIG---YPEREDIQST-LFIDSAA 296 ++ + K+ +A A+ + + ++K + + + E IQS + +D + Sbjct: 508 MSNYPEHLKSFIEDDVCMSAFGALLWYMQYLKLDKELVSLGNFSDYEPIQSEYMVLDGHS 567 Query: 297 RSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFI 355 NLE+ + + +L K ++ ++ G RL + +A PL D KI RLD++ F+ Sbjct: 568 LQNLEVFANSYDSTDAGTLFKLLNKCVSPFGKRLLQQWVALPLLDQVKIEARLDAVEAFM 627 Query: 356 QNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE 415 ++ I++ L PD+ R L+R+ GR PKD + +G +++ L PE Sbjct: 628 EDDF---GIERRLAKLPDLERLLARIHAGRIMPKDFVRVVEGFEEVYHMVAA-LSEKAPE 683 Query: 416 ELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDG---GFL--RDGADASLDETR-SLRD 469 + ++ L +SL L +ML F R G L G + D ++ +++ Sbjct: 684 ----SAPLIRTLIESL-PNLETMLVPWDTKFDRQKAKEGLLIPEPGVETDFDASQGTIKG 738 Query: 470 QSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTM 529 ++ L+ +Y +E K + +K + Y IE+ +K + + + Sbjct: 739 LEDELMVKLR-EYRKEYKSQEIKFYDSGKEIYLIEMP------VKLVKQIPNSWQQMSGT 791 Query: 530 SNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDIS 589 + + RF + E+ L ++ A IE + E S +V A +D Sbjct: 792 AKVKRFWSPEVKALVRKLMEAREDHKTIEAAMERRMYAQFDEHYSSWLRCVEVCAQLDCL 851 Query: 590 IALAILAKE--QNYCRP-----IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLS 642 ++LA ++ CRP + + RHP + S+K FI ND L Sbjct: 852 LSLAKCSQTLGSPSCRPEFVPYVSGTDATLKFEGLRHPCFD------STKQFIPNDVSLG 905 Query: 643 CPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGS 702 + + LLTG N GKST LR +MAQMG +VPA+ A + +D++ +R+G+ Sbjct: 906 ----GDEANITLLTGANAAGKSTVLRMTCTAAVMAQMGCHVPAASARLTPIDRIITRLGA 961 Query: 703 ADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETN 762 DN+ +G+STF VE+ ET + + AT QS ++LDE+GRG ++ DG +IA A + ++ Sbjct: 962 QDNIFAGKSTFYVELSETKKVFD-ATPQSLIVLDELGRGGSSADGFAIAEAVLHHVATQV 1020 Query: 763 RCRGLLATHFHEL-TDLSKSLK-RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGK 820 C G ATH+ L T + + R + VS++++ I FL+K+ PG + S+G+ V Sbjct: 1021 GCLGFFATHYGTLHTSFTHHPQVRPMRMAILVSEASKEITFLYKLEPGSSPGSFGMHVAA 1080 Query: 821 LAGLPNTVISRAYDILKTFE 840 + G+ +++ A + K FE Sbjct: 1081 MCGIDKSIVDNAEEAAKKFE 1100 >gi|159125092|gb|EDP50209.1| DNA mismatch repair protein Msh6, putative [Aspergillus fumigatus A1163] Length = 1213 Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 233/872 (26%), Positives = 405/872 (46%), Gaps = 92/872 (10%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P +QY EIK D++VF++ G FYEL+ +DA + + + LT R ++ M G Sbjct: 319 SPFEKQYWEIKQKFWDTIVFFKKGKFYELYENDATIGHQLFDLKLTDR-----VNMRMVG 373 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL-------EAKKRGNKS--LVRRNVVRLVTP 136 VP + +H+ + + G +IA +Q ES L + KK G K +++R + ++T Sbjct: 374 VPEMSLDHWANQFVAKGFKIARVDQSESALGKEMRERDGKKAGGKEDKIIKRELSCVLTA 433 Query: 137 GTLTEDQLLSPTDSNYLMAVARI----RTEWAIAWIDISTGIFKISTSNHD----RLISD 188 GTL E +L S Y +A+ R + +A++D +TG F +S D + + Sbjct: 434 GTLVEGSMLQDDMSTYCVAIKEAIVDDRPAFGLAFVDTATGQFSLSEFVDDVDMTKFETF 493 Query: 189 IMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA---QPNVFF---DHSISESRIADYYN 242 + + P+E++ + +S + L G + +P F D ++ E ++Y+ Sbjct: 494 VAQTRPQELLLEKSTISQKALRILKNNTGPTTIWNHLKPGKEFWEADITVKELDASEYFV 553 Query: 243 ITTVDTFGSFSQVEK---------TAAAAAISYIKKTQM-VNKPTIG-YPEREDIQ--ST 289 D ++ + + +A A + Y++ ++ + TIG + + I+ S+ Sbjct: 554 SQDDDNLQAWPETLREARDKELVMSAFGALVQYLRVLKLDRDLITIGNFSWYDPIRKASS 613 Query: 290 LFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRL 348 L +D N+EI + G E +L + ++ IT G R+F + + PL D+ KIN RL Sbjct: 614 LVLDGQTLINMEIFANSFDGGSEGTLFQLLNRCITPFGKRMFKQWVCHPLMDAKKINARL 673 Query: 349 DSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF 408 D+++ + + + L PD+ R +SR+ + +D + +G + L Sbjct: 674 DAVDALNADSSVRDQFSSQLTKMPDLERLISRIHAANCKAQDFVRVLEGFEQIEYTITLL 733 Query: 409 LKNDLPEELRGAVEKL-KKLPQSLEKTLSSMLSDDLPTFKR----DGGFL--RDGADASL 461 N E G + +L +P LSS+L F R + G L + G + Sbjct: 734 KDNGSSSE--GVIGQLISGMPD-----LSSLLEYWKTAFDRTKAKENGILVPKPGVEEDF 786 Query: 462 DETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKD 521 D ++ +Q R + +L + E + + N Y +EV ++ K Sbjct: 787 DTSQERIEQLHRDLDNLLKRQRRELGSTAICYRDNGKEIYQLEVPIKVKNIPKN------ 840 Query: 522 RFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQ 581 + + R+ EL L ++ A + I E E + A + Sbjct: 841 -WDQMSATKQVKRYYFPELRSLIRKLQEAQETHSQIVKEVAGRFYARFDENYTTWLAAVR 899 Query: 582 VIAIIDISIALAILAKEQNY--CRPII--DNSTNFIVKDGRHPIVEKTLKQQSSKPFIAN 637 +I+ +D I+LA + + CRP+ D + ++ RHP + +++ FI N Sbjct: 900 IISQLDCLISLAKASSSLGHPSCRPVFVEDERSVLEFEELRHPCLLSSVED-----FIPN 954 Query: 638 DCDLS--CPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDK 695 D L PN + LLTG N GKST LR + VIMAQ+G Y+P A + VD+ Sbjct: 955 DVRLGGEVPN------INLLTGANAAGKSTVLRMTCIAVIMAQIGCYLPCRSARLTPVDR 1008 Query: 696 LFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATI 755 + SR+G+ DN+ + +STF VE+ ET IL++AT +S VILDE+GRGT++ DG+++A A + Sbjct: 1009 IMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVL 1068 Query: 756 EYLHETNRCRGLLATHFHELT-------DLSKSLKRFHNATLQVSDSNEGIIFLHKVIPG 808 ++ G ATH+H L +++ + H V D I FL+K+ G Sbjct: 1069 HHVATHIGAMGFFATHYHSLAAEFDGHPEITPKRMKIH-----VDDEERRITFLYKLEDG 1123 Query: 809 IADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 +A+ S+G+ + G+PN VI RA K +E Sbjct: 1124 VAEGSFGMHCASMCGIPNKVIERAEVAAKQWE 1155 >gi|70994396|ref|XP_751995.1| DNA mismatch repair protein Msh6 [Aspergillus fumigatus Af293] gi|66849629|gb|EAL89957.1| DNA mismatch repair protein Msh6, putative [Aspergillus fumigatus Af293] Length = 1213 Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 233/872 (26%), Positives = 405/872 (46%), Gaps = 92/872 (10%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P +QY EIK D++VF++ G FYEL+ +DA + + + LT R ++ M G Sbjct: 319 SPFEKQYWEIKQKFWDTIVFFKKGKFYELYENDATIGHQLFDLKLTDR-----VNMRMVG 373 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL-------EAKKRGNKS--LVRRNVVRLVTP 136 VP + +H+ + + G +IA +Q ES L + KK G K +++R + ++T Sbjct: 374 VPEMSLDHWANQFVAKGFKIARVDQSESALGKEMRERDGKKAGGKEDKIIKRELSCVLTA 433 Query: 137 GTLTEDQLLSPTDSNYLMAVARI----RTEWAIAWIDISTGIFKISTSNHD----RLISD 188 GTL E +L S Y +A+ R + +A++D +TG F +S D + + Sbjct: 434 GTLVEGSMLQDDMSTYCVAIKEAIVDDRPAFGLAFVDTATGQFSLSEFVDDVDMTKFETF 493 Query: 189 IMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA---QPNVFF---DHSISESRIADYYN 242 + + P+E++ + +S + L G + +P F D ++ E ++Y+ Sbjct: 494 VAQTRPQELLLEKSTISQKALRILKNNTGPTTIWNHLKPGKEFWEADITVKELDASEYFV 553 Query: 243 ITTVDTFGSFSQVEK---------TAAAAAISYIKKTQM-VNKPTIG-YPEREDIQ--ST 289 D ++ + + +A A + Y++ ++ + TIG + + I+ S+ Sbjct: 554 SQDDDNLQAWPETLREARDKEMVMSAFGALVQYLRVLKLDRDLITIGNFSWYDPIRKASS 613 Query: 290 LFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRL 348 L +D N+EI + G E +L + ++ IT G R+F + + PL D+ KIN RL Sbjct: 614 LVLDGQTLINMEIFANSFDGGSEGTLFQLLNRCITPFGKRMFKQWVCHPLMDAKKINARL 673 Query: 349 DSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF 408 D+++ + + + L PD+ R +SR+ + +D + +G + L Sbjct: 674 DAVDALNADSSVRDQFSSQLTKMPDLERLISRIHAANCKAQDFVRVLEGFEQIEYTITLL 733 Query: 409 LKNDLPEELRGAVEKL-KKLPQSLEKTLSSMLSDDLPTFKR----DGGFL--RDGADASL 461 N E G + +L +P LSS+L F R + G L + G + Sbjct: 734 KDNGSSSE--GVIGQLISGMPD-----LSSLLEYWKTAFDRTKAKENGILVPKPGVEEDF 786 Query: 462 DETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKD 521 D ++ +Q R + +L + E + + N Y +EV ++ K Sbjct: 787 DTSQERIEQLHRDLDNLLKRQRRELGSTAICYRDNGKEIYQLEVPIKVKNIPKN------ 840 Query: 522 RFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQ 581 + + R+ EL L ++ A + I E E + A + Sbjct: 841 -WDQMSATKQVKRYYFPELRSLIRKLQEAQETHSQIVKEVAGRFYARFDENYTTWLAAVR 899 Query: 582 VIAIIDISIALAILAKEQNY--CRPII--DNSTNFIVKDGRHPIVEKTLKQQSSKPFIAN 637 +I+ +D I+LA + + CRP+ D + ++ RHP + +++ FI N Sbjct: 900 IISQLDCLISLAKASSSLGHPSCRPVFVEDERSVLEFEELRHPCLLSSVED-----FIPN 954 Query: 638 DCDLS--CPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDK 695 D L PN + LLTG N GKST LR + VIMAQ+G Y+P A + VD+ Sbjct: 955 DVRLGGEVPN------INLLTGANAAGKSTVLRMTCIAVIMAQIGCYLPCRSARLTPVDR 1008 Query: 696 LFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATI 755 + SR+G+ DN+ + +STF VE+ ET IL++AT +S VILDE+GRGT++ DG+++A A + Sbjct: 1009 IMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVL 1068 Query: 756 EYLHETNRCRGLLATHFHELT-------DLSKSLKRFHNATLQVSDSNEGIIFLHKVIPG 808 ++ G ATH+H L +++ + H V D I FL+K+ G Sbjct: 1069 HHVATHIGAMGFFATHYHSLAAEFDGHPEITPKRMKIH-----VDDEERRITFLYKLEDG 1123 Query: 809 IADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 +A+ S+G+ + G+PN VI RA K +E Sbjct: 1124 VAEGSFGMHCASMCGIPNKVIERAEVAAKQWE 1155 >gi|326668008|ref|XP_003198705.1| PREDICTED: DNA mismatch repair protein Msh3-like [Danio rerio] Length = 1083 Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 253/946 (26%), Positives = 432/946 (45%), Gaps = 170/946 (17%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ QY+EIK + D+++ G Y F +DA +A++ L IT HL + Sbjct: 189 TPLEEQYMEIKKQHVDTVLCVECGYKYRFFGEDAEIAAKELNITC-----HLDHNFMTAS 243 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLVTPGTLT---- 140 +P H ++++L+ G+++ + +Q E + ++A SL R + L T TL Sbjct: 244 IPTHRLFVHVRRLVSQGYKVGVVKQTETTAIKASSANKSSLFSRQLHALYTKSTLVGEDV 303 Query: 141 -----------EDQLLSPTDSNYLMAVA----RIRTEWAIAWI-------DISTGIFKIS 178 + ++ + +NYLM V+ + E + + D+ FK + Sbjct: 304 NPLLKLGDLEQAEDVVQDSGNNYLMCVSESFDKQSKELTVGMVVVQPSIGDVMVDCFKDN 363 Query: 179 TSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA------------QPNV 226 TS H L S I+RI P EI+ +LS + L N+A++ + + Sbjct: 364 TS-HSALESRILRIQPVEILVP-SDLSETTER----LLRNIALSSVQADDRIRIEKRESA 417 Query: 227 FFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDI 286 F++ + S I D+Y G+ EK + + + P I Y + Sbjct: 418 MFEYPTALSIIKDFYRGGPHSAAGNH---EKGSYSLCMGLESPIICCLGPVIQYLTEFKL 474 Query: 287 QSTLFIDS----------------AARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRL 329 + L S A NLEIL +GS + SLL +D++ T G RL Sbjct: 475 EKILLCSSSFKRLSSDSDHMLLSAATMKNLEILCNQTTGSVKGSLLWVLDHTQTLFGKRL 534 Query: 330 FAERIASPLTDSTKINTRLDSINFFIQNPILINP-IQKILKSSPDVPR------------ 376 + ++ PL I R +++ + + + P IQ +L PD+ R Sbjct: 535 LRKWVSQPLKSVIDIQARQEAVAEILSSESSVLPSIQSLLTRLPDLERGLCSIYHKKEFY 594 Query: 377 ----SLSRLKIGRGEPKDIAVIRDGIRSGIN--ILNLFLKNDLPEELRGAVEKLKKLPQS 430 SLSRL + ++ + I+S ++ +L L D P+ L A LK L + Sbjct: 595 LIISSLSRLNV------ELQALMPAIQSQLSSPLLKTLLL-DTPQLLSPAHNFLKVLNEK 647 Query: 431 LEKT--LSSMLSD--DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 KT + M D D P ++ ++ ++ L + R + + ++ + L Y T Sbjct: 648 AAKTGNKTEMFVDLTDFPVIRKT----KEEIESVLLDIMEHRREVRLLLKNPSLDY---T 700 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENR 546 + + + IEV +S +S++ D ++ + R+ T +++ R Sbjct: 701 TVSGQQ--------FLIEVKNSMSSIVPAD------WVKISSTKVFGRYHTPFIVEKHRR 746 Query: 547 ITNATNSALLIEL------------ESFEILSNAIIEQSESLDNASQVIAIIDISIALAI 594 + L+I+ + + IL A+ +A +D +LA Sbjct: 747 L-QQLREQLVIDCNHEWINFLQLFGDHYYILRKAVCH-----------LATMDCLFSLAQ 794 Query: 595 LAKEQNYCRP-IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLW 653 +AKE NYCRP +++ + ++ G+HP++ + Q ++ ND L + + Sbjct: 795 VAKENNYCRPEVLEEKSQILITAGKHPVITSLMGDQDQ--YVPNDTHL----QGDGKRAM 848 Query: 654 LLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTF 713 ++TGPNMGGKS+++RQ AL+ IMAQ+GS+VPA A +GIVD ++ R+G++DN++ GRSTF Sbjct: 849 IITGPNMGGKSSYIRQVALVTIMAQLGSFVPAREASVGIVDGIYVRMGASDNISRGRSTF 908 Query: 714 MVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFH 773 M E++ET+ +L AT++S VILDE+GRGT+T DG++IA+AT+E C L TH+ Sbjct: 909 MEELLETSDVLACATSRSLVILDELGRGTSTHDGIAIAYATLESFIREVGCMTLFVTHYP 968 Query: 774 ELTDLS----KSLKRFHNATL-----QVSDSNEG----IIFLHKVIPGIADHSYGIQVGK 820 L +L + + +H A L SD E I FL+++I G A SYG+ V + Sbjct: 969 PLCELEHLYPQHVGNYHMAFLLNEPESTSDEEEAQPEFITFLYQLIEGAAARSYGLNVAR 1028 Query: 821 LAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNNL 866 LA +P +++ A K E L + R Y + T+ KN + Sbjct: 1029 LAEIPESILRTAAFKSKELEALV-----NSRRYVGRLVTQWKKNTV 1069 >gi|71018553|ref|XP_759507.1| hypothetical protein UM03360.1 [Ustilago maydis 521] gi|46098995|gb|EAK84228.1| hypothetical protein UM03360.1 [Ustilago maydis 521] Length = 1716 Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 247/901 (27%), Positives = 420/901 (46%), Gaps = 119/901 (13%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TP RQ+ EIK + D+++F++ G FYEL+ +DAL+ R + LT R K + Sbjct: 382 KDFTPFERQFWEIKQNHWDTVLFFQKGKFYELYEEDALIGHREFDLKLTDRVK-----MK 436 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPL-------EAKKRGNKSLVRRNVVRLVT 135 M GVP + + + K + +G+++ +Q E+ + E + G +V R + ++T Sbjct: 437 MVGVPEASFDIFAAKFLALGYKVGRVDQTETAVAKGMRVGERSRGGGSEIVNRELRHVLT 496 Query: 136 PGTLTEDQLLSPTDSNYLMAVARIRTE------WAIAWIDISTGIFKISTSNHD----RL 185 GT+ + L +NY +++ T + + +D +T F ++ D RL Sbjct: 497 SGTIVDAASLPDDLNNYCVSIKESATTGRNGPIFGVCTLDAATAEFNLTEFEDDESRTRL 556 Query: 186 ISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVA---VAQPNV-FFDHSISESRIADYY 241 + + + +E++ + L+ + L T+ + A + +P + F + + ++ + Sbjct: 557 ETLLRSLRLKEVLHEKGGLTAPTLRVLRSTVPSTAQITMLKPGLEFLEPETTLRKLNALF 616 Query: 242 N--------ITTVDTF-------GSFSQVEKTAAAAAIS----YIKKTQM------VNKP 276 N + ++D G S V + A +A+ Y+ + + Sbjct: 617 NPDVDAEARLDSLDAVDPSLLPEGIASMVHRPCAMSALGGMLCYLAQLNLDRDLCSSRNF 676 Query: 277 TIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIAS 336 I P +D L +D+ + ++L +L+ G+ E +L + ++ +T G RLF + + Sbjct: 677 NIFDPLHQD--KCLVLDAQSLTHLNVLQNDEGTDEGTLHRLLNRCVTPFGKRLFKIWLVA 734 Query: 337 PLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRD 396 PL + IN R D++ ++NP + + K+ PD+ R + R++ G+ P+D + Sbjct: 735 PLATADAINARQDAVEDLLKNPCFGDQFETFGKALPDIERIVPRVRAGKCRPRDFTAV-- 792 Query: 397 GIRSGINILNLFLKNDLPEELRGAVEK---------LKKLPQSLEKTLSSMLSDDLPTFK 447 + L F K ++LR E LK +P +S++ + +FK Sbjct: 793 -----LKSLGHFEKAI--KQLRNQCEGFSTDVMDGLLKSVP-----AVSAIARELQSSFK 840 Query: 448 --RDGGFLR-DGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKI-------KHNN 497 DG F +GA D R ++ QL++ E+ K LK+ KH Sbjct: 841 VTEDGSFTPIEGAFELYD-----RAEAAIAEVEAQLEHEIESYRKQLKLNPVKCAWKHLG 895 Query: 498 NLGYF---IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 F + V + S K +KDR R+ + ++ DL I A + Sbjct: 896 TKDIFQIEVPVATKVPSNWTKLSGTKDR----------NRWYSPKVRDLVQEIKEARETR 945 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIID--ISIALAILAKEQNYCRP-IIDNSTN 611 L + + L + EQS+ A + IA ID +S+A A A + CRP ++ N T Sbjct: 946 LATLKQFHQSLFASFSEQSDVFLRAVKTIAEIDCLLSLAKASYAIGEPSCRPELVHNETA 1005 Query: 612 FI-VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 I ++ RHP + + FI ND L ND+ + +LTG NM GKST R Sbjct: 1006 LIEFEELRHPCIAG-----DNVDFIPNDIRLGGKNDE----VVILTGGNMAGKSTTARTC 1056 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 A VI+AQ+G VPA A + VD++ SR+G+ D + STFMVEM+E + I+N+ T + Sbjct: 1057 ATAVILAQLGCRVPALSARLSPVDRIASRMGANDQIFGNNSTFMVEMLEASRIINECTPR 1116 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 S VI+DE+GRGT+T DG +IA+A + +L RC TH+ L S R N + Sbjct: 1117 SLVIMDELGRGTSTFDGQAIAFAVLHHLVSRTRCLAFFLTHYTNLAYDFDSYSRVSNKHM 1176 Query: 791 Q--VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 Q V D +IF +++I GIA+ SYG QV LAG+P+ + RA + K F +Q Sbjct: 1177 QVLVDDDKREVIFTYRLIDGIAESSYGTQVAALAGVPHEICDRAAVVSKQFADATKASQS 1236 Query: 849 D 849 + Sbjct: 1237 E 1237 >gi|302773165|ref|XP_002970000.1| hypothetical protein SELMODRAFT_410679 [Selaginella moellendorffii] gi|300162511|gb|EFJ29124.1| hypothetical protein SELMODRAFT_410679 [Selaginella moellendorffii] Length = 1232 Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 242/891 (27%), Positives = 408/891 (45%), Gaps = 118/891 (13%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E +K T RQ+ E K+ + D ++ ++MG FYE+F DA + ++ L + +++ Sbjct: 279 EFVKGLTGGQRQWWEFKAKHMDKVLLFKMGKFYEMFEMDAHVGAQDLDL------QYMKG 332 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESP--LEAKKRGNKS---LVRRNVVRLV 134 + P CG P ++KL++ GHR+ + EQ E+P LE +KR S +VRR + ++ Sbjct: 333 EQPHCGFPEKNYFENVEKLVRKGHRVLVVEQTETPEQLEERKRKTGSKDKVVRREICAII 392 Query: 135 TPGTLTEDQLLSP-TDSNYLMAVARIRTEWA-----IAWIDISTGIFKISTSNHD----R 184 T GT+ + ++S + ++L AV + + +D S +F + D + Sbjct: 393 TKGTMVDSGMISDNAEPSFLAAVTEKADNYGSSLVGLCVVDASRALFMLGQVEDDSARTK 452 Query: 185 LISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQ---PNVFFDHSISESRIADYY 241 L S + + P E++ L+ A K+L E ++Q F+D + I Y Sbjct: 453 LRSILTELRPVELVLPLGLLTDATQKALREQTRKPLISQLVPSKEFWDAEQTTKEIRTSY 512 Query: 242 N--------ITTVDTFGSFSQVEKTAAAAAISYIKKTQMVN------------------K 275 + + G S+ +A I Y++++ + + Sbjct: 513 GASDAMPTVLQKILELGVSSEPVLSAFGGCICYLRQSLLDGQLLQLGRFELLPGSDLSFE 572 Query: 276 PTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSR-EQSLLKTIDYSITGAGGRLFAERI 334 + PE + ++ + +DSAA NLEIL S +LL +D+ IT G RL + I Sbjct: 573 HSAAIPEADPAEAHMVLDSAALDNLEILENSSNCGVAGTLLCLLDHCITPFGRRLLKQWI 632 Query: 335 ASPLTDSTKINTRLDSI---NFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGE---- 387 PL + I R +++ +N ++ ++ L PD+ R L+RL GE Sbjct: 633 VRPLCNIESIVQRQNAVVDMQGVAEN--AVSEFRRELFGIPDLERLLARLSANSGENGRH 690 Query: 388 PKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK--------LPQSLEKTLSSML 439 + + + D + I +L LRG +KL K LPQ L S+L Sbjct: 691 SQKVVLYEDAAKKQIK--------ELVAALRG-FQKLVKAVSCFGNCLPQLKSARLRSLL 741 Query: 440 S--DDLPTFKRDGGFLRDGADASLDETR-----------SLRDQSKRIIASL--QLKYAE 484 + P K + D D S E S D +++ + L Q K+ + Sbjct: 742 TFGKGFPDLKPLLQYFEDSFDWSESEANGRVTGGDHSNLSASDPREKLESYLKSQQKFFK 801 Query: 485 ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLE 544 +I + + + Y +E+ + + D E R + R+ T + +L Sbjct: 802 NPEISYVTVGKDT---YLLEIPEELHTKVPSDYEL------RSSRKGFCRYWTPRVKELL 852 Query: 545 NRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIID--ISIALAILAKEQNYC 602 ++ N + L+ + + +A + ++ +D +SI+ A L + C Sbjct: 853 QELSLCENEKEAALRGILQTLTKRFCDDHDHWLSAIRAVSELDALMSISSARLHMDGMTC 912 Query: 603 RPIIDNSTN-----FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTG 657 P ++ F K RHPIV + +S PF+ ND L ++ ++ LLTG Sbjct: 913 LPTFVPASQLAKPVFRAKALRHPIV--AVSTAASTPFVPNDVVL---GGGSNPEVMLLTG 967 Query: 658 PNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEM 717 PNMGGKST LRQ L +I+AQ+GS VPA + + D+LF R+G+ D + +G+STF++E+ Sbjct: 968 PNMGGKSTLLRQVCLGMILAQIGSEVPAESLELSLTDRLFVRMGAKDQIMTGQSTFLIEL 1027 Query: 718 IETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELT- 776 +ETA +L AT SFV LDE+GRGTAT DG +IA A + YL +CRG+ ++H+H+L Sbjct: 1028 LETAVMLRCATQNSFVALDELGRGTATSDGQAIAHAVLHYLAHNVQCRGMFSSHYHKLAS 1087 Query: 777 ----DLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAG 823 D S SL ++ E + FL+K+ G SYG+ V ++AG Sbjct: 1088 DFANDPSVSLCHMACKVGGGNNELEAVTFLYKLTSGSCPKSYGVNVARIAG 1138 >gi|328872398|gb|EGG20765.1| mutS like protein [Dictyostelium fasciculatum] Length = 1237 Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 262/909 (28%), Positives = 435/909 (47%), Gaps = 139/909 (15%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ +QY++IK PD+++ G Y+ F +DA +A++ L I ++ K+ Sbjct: 308 TPLEQQYVDIKKQYPDTVLMVECGYKYKFFGNDAEVANKVLNIY-----SYVVKNFLNAS 362 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESP-LEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 +P H++++L++ G+++ + EQIE+ L+A R + RL T T +DQ+ Sbjct: 363 IPTVRLYHHLRRLVQAGYKVGVVEQIETAALKAVSDSKGGPFERKLTRLYTTSTFIDDQV 422 Query: 145 --------LSPTDSNYLMA------VARI---RTEWAIAWIDISTGIFKISTSNHDRLIS 187 S NYL+A + +I T + I +STG + + D L S Sbjct: 423 DESNNTLDFSNISPNYLVAFYEDTQIKKIDSPTTRISFVAISVSTGEIIYDSFDDDLLRS 482 Query: 188 DI----MRIDPREII----FSEKE---LSHAEYKSLFETLGNVAVAQ----PNV------ 226 + + P EI+ + +K+ H Y S F L + + Q NV Sbjct: 483 HLETRLTHLKPTEILLPPEYKQKQDDGTDHFIY-SKFTRLTSKTIKQYCKTNNVRVQLMK 541 Query: 227 --FFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAIS--------------YIKKT 270 +D +S S I D Y D F + +Q +TA +AA++ Y+K Sbjct: 542 ESLYDKDLSVSNITDLY-----DQFEN-NQETQTALSAALTLDSSQIVCLSVLTTYLKDF 595 Query: 271 QMVN---KPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSITGAG 326 N K + + I + L + + NLEIL+ E+ SL ++ + T AG Sbjct: 596 NQFNSILKVASNFKAFK-ISNHLILPRSTIDNLEILQNEDTKSEKGSLYWVMNRTQTIAG 654 Query: 327 GRLFAERIASPLTDSTKINTRLDSI----NFFIQNPILINPIQKILKSS-PDVPRSLSRL 381 RLF I PL D I R +S+ N ++ I I LKSS PD+ R+LS++ Sbjct: 655 KRLFLNWICKPLIDLELIKLRQESVKELLNCIVERVKSIELIGSFLKSSIPDLQRNLSKV 714 Query: 382 KI-GRGEPKD-IAVIRDGIR-----SGINILNLFLKNDLPEELRG-----AVEKLKKLPQ 429 + +PKD ++ ++ R S ++ L F K+ + +EL G A E+++K Sbjct: 715 FYKSQCKPKDFLSTMKSFQRLSTLLSDVSRLGEF-KSKVLKELFGINDEWAGERVEKFRV 773 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 ++ TL ++ D+ + ++ + + L ET++ + + + K +E Sbjct: 774 KVDTTLKAISHDEATSNCKENIWTDETRYPKLVETKAHIKEIQDKLDQYLKKVRKEVGKP 833 Query: 490 NLKIKHNN--NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID----- 542 L+ H +L Y IE+ + V K ++ L+R+ T +I+ Sbjct: 834 TLEYLHQPRLHLEYLIELPVAFKQVPKD-------WLKINATQKLSRYHTPYIIENVKLL 886 Query: 543 --LENRITNATNSALLIEL----ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILA 596 R+T N A L L + + S+ I + +A++D ++LA L Sbjct: 887 AQHRERLTLLANEAWLDFLGKVGNDYTLYSSMITK-----------LALLDCLMSLAKLG 935 Query: 597 KEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLT 656 Y P + + V +GRHPIVE TL Q+ ++ N LS ++ ++T Sbjct: 936 MSAGYVLPELSSEPGINVVEGRHPIVEMTLGQKGGS-YVPNSIKLSSAEER----AMIIT 990 Query: 657 GPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVE 716 GPNMGGKS+F+RQ +LIVIMAQMGSYVPA +G+ D +++R+G+ DN+ G STF VE Sbjct: 991 GPNMGGKSSFIRQTSLIVIMAQMGSYVPAESCTMGVFDAIYTRMGARDNIEHGSSTFFVE 1050 Query: 717 MIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELT 776 + ET+ IL +AT ++ VILDE+GRGT+T DG++IA++++ Y+ E +C L TH+ L+ Sbjct: 1051 LQETSQILAEATPRTLVILDELGRGTSTHDGVAIAYSSLLYIVEQLKCFCLFVTHYPLLS 1110 Query: 777 DLS----KSLKRFHNATLQVSDSNEG---------IIFLHKVIPGIADHSYGIQVGKLAG 823 + +++ +H + L+ +N +IFL+KV+ G A +SYGI V LA Sbjct: 1111 QIENMYPQNVSNYHMSFLEEQQNNPDNGQYQQQPKVIFLYKVVRGAAKNSYGINVATLAN 1170 Query: 824 LPNTVISRA 832 LP VI A Sbjct: 1171 LPQPVIQSA 1179 >gi|164657614|ref|XP_001729933.1| hypothetical protein MGL_2919 [Malassezia globosa CBS 7966] gi|159103827|gb|EDP42719.1| hypothetical protein MGL_2919 [Malassezia globosa CBS 7966] Length = 1172 Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 242/879 (27%), Positives = 423/879 (48%), Gaps = 87/879 (9%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 KS TP +Q+ EIK + D+++F++ G FYEL+ +DAL+ R + LT R K + Sbjct: 295 KSFTPFEKQFWEIKQQHWDTVLFFQKGKFYELYEEDALIGHRECDLKLTDRVK-----MK 349 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPL-------EAKKRGNKSLVRRNVVRLVT 135 M GVP + + + KL+ +G+++ +Q E+ + E + G +VRR + +VT Sbjct: 350 MVGVPEASFDMFATKLLALGYKVGRVDQCETAVAKGMRVGEKSRGGGSDIVRRELRHVVT 409 Query: 136 PGTLTEDQLLSPTDSNYLMAVARI-----RTEWAIAWIDISTGIFKISTSNHDRLISDI- 189 GT+ + +L+ S+Y +++ +E+ I +D +T F+ + D ++S + Sbjct: 410 SGTIVDGSVLADDLSSYCISIKEHVLPSGLSEFGICTLDAATAEFRYMSFEDDAVLSQLE 469 Query: 190 -----MRIDPREIIFSEKELSHAEYK---SLFETLGNVAVAQPNV-FFDHSISESRIADY 240 +RI +E++ + +S + + + T + + +P+ F D + +R+A Sbjct: 470 TLLRSLRI--KEVLHEKGVMSPSTLRLIRNTVPTTCQITMLKPDTEFLDEISTRARLAHL 527 Query: 241 YNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPT----IGYPERE----DIQSTLFI 292 ++ + D ++ A A + + +N T G + + D Q L + Sbjct: 528 FD-SVPDGLAPLAEQGGLALCALGGLLWYLEQLNLDTDLCASGNFQVQTAPADAQGALVL 586 Query: 293 DSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSIN 352 D+ + +L +L+ GS E +L + ++ T G RLF ++SPL+ I RLD+++ Sbjct: 587 DAKSLMHLHVLQNDEGSDEGTLHRLLNRCTTPFGRRLFKLWLSSPLSKIEAIEARLDAVD 646 Query: 353 FFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKD-IAVIRDGIRSG-----INILN 406 NP + KS PD+ R SR+ G+ P+D + V+R R G + L Sbjct: 647 DLRANPAWADAFDAFAKSLPDLERLQSRIAAGKCRPRDFLLVLRAFGRFGSAKEQLLTLL 706 Query: 407 LFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLR-----DGADASL 461 ++ + V L++ P E L+ ML + DG F + DA++ Sbjct: 707 SLSESPVSRPSSVLVTLLREWPDVAE--LAQMLRSHFVS-NDDGSFTPVKGECEAYDAAV 763 Query: 462 DETRS----LRDQSKRIIASLQLKYAEETKIKNLKIKH-NNNLGYFIEVTSSSASVLKKD 516 D + L + R +A L++ E KH N Y +EV + + Sbjct: 764 DSVHAAEARLEAEKDRCVAELRISKREA------GWKHVGTNEIYQLEVPARTKVPAPWI 817 Query: 517 LESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQS-ES 575 L S+ + R T ELI R + L+ F+ Q S Sbjct: 818 LMSQTKACKRYYTPR-----TRELI----RELKEARETRVAALKRFQEDVYVWFRQDLPS 868 Query: 576 LDNASQVIAIID--ISIALAILAKEQNYCRP--IIDNSTNFIVKDGRHPIVEKTLKQQSS 631 A + +A +D +S+A + +A CRP + +S F RHP + + ++ Sbjct: 869 YARAIRSVAQLDCLVSLAKSSMALGTPACRPELVQQDSAMFRFTQLRHPCMAPSSLTGAT 928 Query: 632 KPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIG 691 + FI ND L ++ + +LTG NM GKST R A VI+AQMG YVPA++A I Sbjct: 929 E-FIPNDVALGA----DAEDVMVLTGGNMAGKSTTARTAATAVILAQMGCYVPATHARIA 983 Query: 692 IVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIA 751 VD++ SR+G+ D L +STFMVEM+E + IL +AT +S V++DE+GRGT+T DG +IA Sbjct: 984 PVDRIASRMGANDQLFRRQSTFMVEMLEASKILREATPRSLVLMDELGRGTSTFDGQAIA 1043 Query: 752 WATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ--VSDSNEGIIFLHKVIPGI 809 +A + +L ++C TH+ + + R N ++ V D + ++F ++++PG+ Sbjct: 1044 YAVLYHLVARSQCLCFFMTHYTTMAQSLDTYPRLANRHMEVRVDDEHRHVVFTYRLVPGV 1103 Query: 810 ADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 A+ SYG QV +AG+P + ++A D+ + F +H Q+ Sbjct: 1104 AESSYGTQVAHIAGVPADICAKASDVSREF---WHEAQR 1139 >gi|330878038|gb|EGH12187.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. glycinea str. race 4] Length = 532 Score = 270 bits (691), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 175/545 (32%), Positives = 280/545 (51%), Gaps = 21/545 (3%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY ++K+ + D L+FYRMGDFYE+F++DA A++ L ITLT RG+ G+ IPMCG+P Sbjct: 1 MMQQYWKLKNQHLDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQSIPMCGIP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H A Y+ KL+K+G + ICEQI P + K V R VVR++TPGT++++ LL Sbjct: 61 YHAAEGYLAKLVKLGESVVICEQIGDPATS-----KGPVDRQVVRIITPGTISDEALLDE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIFSEKELSH 206 N + AV + +A +DI++G F + + L++++ RI+P E++ + Sbjct: 116 RRDNLIAAVLGDERLFGLAVLDITSGNFSVLEIKGWENLLAELERINPVELLIPDD---- 171 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAA-IS 265 + L A + F+ + + ++ + FG + AA +S Sbjct: 172 -WPQGLPAEKRRGARRRAPWDFERDSAHKSLCQQFSTQDLKGFGCENLTLAIGAAGCLLS 230 Query: 266 YIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGA 325 Y K+TQ P + E + T+ +D+A+R NLE+ LSG R+ +L +D T Sbjct: 231 YAKETQRTALPHLRSLRHERLDDTVILDAASRRNLELDTNLSGGRDNTLQSVMDRCQTAM 290 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGR 385 G RL + PL D T + R SI F++ N +Q LK D+ R L+R+ + Sbjct: 291 GTRLLTRWLNRPLRDLTILQARQTSITCFLERYRFEN-LQPQLKEIGDIERILARIGLRN 349 Query: 386 GEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPT 445 P+D+A +RD + S + L + + L+ + P+ L L + D+ P Sbjct: 350 ARPRDLARLRDAL-SALPELQQAMTDLEAPHLQQLAQTASTYPE-LADLLQRAIIDNPPA 407 Query: 446 FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEV 505 RDGG L+ G DA LD+ +SL + + + + L+ + T + NLK+ +N GYFIE+ Sbjct: 408 VIRDGGVLKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLANLKVGYNRVHGYFIEL 467 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEIL 565 S A D +I RQT+ RF T EL + E++ +A + AL E +E L Sbjct: 468 PSKQAEQAPAD------YIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKMLYEAL 521 Query: 566 SNAII 570 +I Sbjct: 522 LEDLI 526 >gi|121707076|ref|XP_001271724.1| DNA mismatch repair protein Msh6, putative [Aspergillus clavatus NRRL 1] gi|119399872|gb|EAW10298.1| DNA mismatch repair protein Msh6, putative [Aspergillus clavatus NRRL 1] Length = 1212 Score = 270 bits (690), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 235/874 (26%), Positives = 408/874 (46%), Gaps = 96/874 (10%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P +QY EIK D++VF++ G FYEL+ +DA + + + LT R ++ M G Sbjct: 317 SPFEKQYWEIKQKFWDTVVFFKKGKFYELYENDATIGHQLFDLKLTDR-----VNMRMVG 371 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL-------EAKKRGNKS--LVRRNVVRLVTP 136 VP + +H+ + + G +IA +Q ES L + KK G K +++R + ++T Sbjct: 372 VPEMSLDHWANQFVAKGFKIARVDQSESALGKEMRERDGKKAGGKEDKIIKRELSCVLTA 431 Query: 137 GTLTEDQLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFKISTSNHD----RLISD 188 GTL E +L S Y +A+ E + IA++D +TG F +S D + + Sbjct: 432 GTLVEGSMLQDDMSTYCVAIKEAIIEDHPAFGIAFVDTATGQFSLSEFGDDADMTKFETF 491 Query: 189 IMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA---QPNVFF---DHSISESRIADYYN 242 + + P+E++ + +S + L G + +P F D ++ E +DY+ Sbjct: 492 VAQTRPQELLLEKSTISTKALRILKNNTGPTTIWNHLKPGKEFWEADITVKELDASDYFV 551 Query: 243 ITTVDTFGSFSQVEKTAAA---------AAISYIKKTQM-VNKPTIG-YPEREDIQST-- 289 D ++ + + A A A + Y++ ++ + TIG + + I+ T Sbjct: 552 SQDDDNLQAWPETLREARAKELAMSAFGALVQYLRMLKLDRDLITIGNFSWYDPIRKTSN 611 Query: 290 LFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRL 348 L +D N+EI + G E +L + ++ IT G R+F + + PL D+ KIN RL Sbjct: 612 LVLDGQTLINMEIFANSFDGGSEGTLFQLLNRCITPFGKRMFKQWVCHPLMDAKKINARL 671 Query: 349 DSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF 408 D+++ + + + L PD+ R +SR+ + +D + +G ++L Sbjct: 672 DAVDALNADSSIRDQFSSQLTKMPDLERLISRIHAANCKAQDFVRVLEGFEQIEYTISLL 731 Query: 409 LKNDLPEELRGAVEKL-KKLPQSLEKTLSSMLSDDLPTFKR----DGGFL--RDGADASL 461 D G + +L +P L S+L F R + G L + G + Sbjct: 732 --KDTGSSGEGVIGQLINAMPD-----LGSLLEYWKTAFDRNKAKENGILVPKLGVEEDF 784 Query: 462 DETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKD 521 D ++ +Q R + +L + E + + N Y +EV +V K Sbjct: 785 DNSQESIEQLHRDLDNLLKRVRRELGSTAICYRDNGKEIYQLEVPVKVKNVPKN------ 838 Query: 522 RFIHRQTMSNLTRFTTLELIDLENRI--TNATNSALLIELESFEILSNAIIEQSESLDNA 579 + + R+ EL L ++ T T+S ++ E+ E + A Sbjct: 839 -WDQMSATKQVKRYYFPELRSLIRKLQETQETHSHIVKEVAGR--FYARFDEHYTTWLAA 895 Query: 580 SQVIAIIDISIALAILAKEQNY--CRPII--DNSTNFIVKDGRHPIVEKTLKQQSSKPFI 635 ++++ +D I+LA + + CRP+ D + ++ RHP + +++ FI Sbjct: 896 VRIVSQLDCLISLAKASSSLGHPSCRPVFVEDGRSVLEFEELRHPCLLSSVED-----FI 950 Query: 636 ANDCDLSC--PNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIV 693 ND L PN + LLTG N GKST LR + + VIMAQ+G Y+P A + V Sbjct: 951 PNDVRLGGERPN------INLLTGANAAGKSTVLRMSCVAVIMAQIGCYLPCKSARLTPV 1004 Query: 694 DKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWA 753 D++ SR+G+ DN+ + +STF VE+ ET IL++AT +S VILDE+GRGT++ DG+++A A Sbjct: 1005 DRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQA 1064 Query: 754 TIEYLHETNRCRGLLATHFHELT-------DLSKSLKRFHNATLQVSDSNEGIIFLHKVI 806 + ++ G ATH+H L +++ R H V D I FL+K+ Sbjct: 1065 VLHHISSHIGAMGFFATHYHSLAAEFEGHPEITPKRMRIH-----VDDQERRITFLYKLE 1119 Query: 807 PGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 G+A+ S+G+ + G+PN +I RA K +E Sbjct: 1120 DGVAEGSFGMHCASMCGIPNKIIERAEVAAKQWE 1153 >gi|326437890|gb|EGD83460.1| hypothetical protein PTSG_04067 [Salpingoeca sp. ATCC 50818] Length = 1327 Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 235/884 (26%), Positives = 418/884 (47%), Gaps = 95/884 (10%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP +QY +IK + ++++F++ G FYEL+ DA + +R + +T R ++ M G Sbjct: 422 TPFEKQYWDIKQHHWNTILFFKKGKFYELYERDAEIGNREFQLKMTDR-----VNMCMAG 476 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKS------LVRRNVVRLVTPGTL 139 VP T + + + G+++A ++ E+ + K R K+ ++ R + + T GTL Sbjct: 477 VPEITFPDWAARFLAKGYKVARVDERENAIAKKMRETKTGKKGPKIIERKLSAVYTQGTL 536 Query: 140 TEDQLLSPTDSNYLMAVAR---IRTEWAIAWIDISTGIFKI-------STSNHDRLISDI 189 D ++ SN++MA+ RT + + + D +T F + + + + LI + Sbjct: 537 MGDFVIGDM-SNFIMAIKEDEDTRT-YGVCFADTATAEFNVCHFVDDAARTAFETLIVQV 594 Query: 190 MRIDPREIIFSEKELSHAEYKSLFE-------------TLGNVAVAQPNVFFDHSISESR 236 M P+E++ +K LS + L E A + D+ +R Sbjct: 595 M---PKELVLPKKSLSKVRVRCLSERPCLVGGEGRGTKGGRRFAFWSSQMTIDNLEKGTR 651 Query: 237 IADYYNITTVDTFGSF-SQVEKTAAAAAISYIKKTQMVNKPTIG---YPEREDIQ--STL 290 + + + +F S+ E +A + KT +++K + + + + +TL Sbjct: 652 ARASVDACSPERLRAFLSKDEAMSALGGLVSYFKTLLLDKSLLSQGTFFSYDPLHHGATL 711 Query: 291 FIDSAARSNLEILRTLS-GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLD 349 ID NL++L + G+ SLL+ + T G R+F + PL I R + Sbjct: 712 VIDGQTLQNLDVLCNMQDGTTSGSLLELLCQCHTAFGKRMFRRWLCHPLRRVNDITERQN 771 Query: 350 SINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFL 409 ++ ++ L + + +LK PD+ R LSR+ +G + D+ + D ++ + Sbjct: 772 AVVDLTEHVDLRDALSSMLKPLPDLERLLSRVHVGNCKLSDLISLLDAF-DAVSGQDEGC 830 Query: 410 KNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD---LPTFKRDGGFLRDGADASLDETRS 466 L L+ ++ + + E + L+ LP + D ++D+ +S Sbjct: 831 VGSLFPNLKAELKAIANIFDRQEAKATDKLTPKPGALPEY-----------DVAVDQMQS 879 Query: 467 LRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHR 526 + + +A+++ ++ I + Y I+V V K + S + + Sbjct: 880 IEKRLNEHLANVRREFGAGKAISFWQPSAGRER-YQIQV-----RVAMKKVPSSWKLMS- 932 Query: 527 QTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAII 586 T +N R+ + E + L + A + F + N+I E E A ++ + Sbjct: 933 STKAN-KRYHSPEAVRLVAKWLEAEETISQFLKTFFSRVLNSINEHREKFGAAVSALSQL 991 Query: 587 DISIAL--AILAKEQNYCRPII-----DNSTNFIV--KDGRHPIVEKTLKQQSS-KPFIA 636 D ++L A + CRP+ D ++ ++ ++ RHP TL+ SS +I Sbjct: 992 DCLLSLYRAKDSMGSPMCRPVFVSTSGDKASRAVLDLREMRHP----TLQHSSSITDYIP 1047 Query: 637 NDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKL 696 ND L +LTGPNMGGKST LRQ + VIMAQ+G +VPA + VD++ Sbjct: 1048 NDTHLG----GEEATTMVLTGPNMGGKSTLLRQTCIAVIMAQLGCWVPAESFTLTPVDRI 1103 Query: 697 FSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIE 756 F+R+G+ DN+ +GRSTFMVE+ ETA+ILN+AT+ S VILDE+GRGT+T DG +IA+A + Sbjct: 1104 FTRIGANDNIVAGRSTFMVELKETATILNKATSSSLVILDELGRGTSTFDGYAIAFAVLS 1163 Query: 757 YLHETNRCRGLLATHFHELTDLSKSLKRF--HNATLQVSDSNEGIIFLHKVIPGIADHSY 814 ++ + RCR + ATH+H LTD K+ +N V D + + FL+K+ PG+ SY Sbjct: 1164 HITDAIRCRCMFATHYHLLTDELKTNPNVTNYNMACVVDDHQKDVTFLYKLQPGVCSKSY 1223 Query: 815 GIQVGKLAGLPNTVISRA------YDILKTFEKLYHHNQKDMRL 852 G+ V +AG+ ++++ A Y+ F KL K + L Sbjct: 1224 GMNVAHMAGVMDSIVETAKEKAVQYEATSRFGKLQDRKAKQLAL 1267 >gi|299753991|ref|XP_001833680.2| DNA mismatch repair protein MSH3 [Coprinopsis cinerea okayama7#130] gi|298410557|gb|EAU88225.2| DNA mismatch repair protein MSH3 [Coprinopsis cinerea okayama7#130] Length = 1096 Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 251/882 (28%), Positives = 413/882 (46%), Gaps = 114/882 (12%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K+ TP+ Q + NP +L+ +G Y+ + DA A+ LG+ + ++ Sbjct: 188 KAYTPLELQVRRLIQENPGTLLMVEVGYKYKFYGKDAKTAATALGM-----AAYRDRNFM 242 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKS-LVRRNVVRLVTPGTLTE 141 + +P H + Y++KL+ +GHR+ I QIE+ K NKS R + L T T Sbjct: 243 VASIPAHRRDIYLKKLLSLGHRVGIVNQIETAALKKVGDNKSGPFERKLTHLYTAATYV- 301 Query: 142 DQLLSPTDSNYLMA--VARIRTEWAIAWI-DISTGIFKISTSNHDRLISDI----MRID- 193 DQL S DS V I EW + S GI I + D + D MRI+ Sbjct: 302 DQLNSVDDSERYTPPPVMCIIEEWKDKNPGNTSFGIISICPATGDVVWDDFEDKAMRIEL 361 Query: 194 --------PREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESR----IADYY 241 P EI+ K LS L + G+ A + +FD ++ S + ++Y Sbjct: 362 ETRLSHLQPAEILQPRKGLSDPTKTILTDFSGSSGNAIRHEYFDQPMTYSDAFEVVTEFY 421 Query: 242 -----NITTVDTFGS---------FSQVEKTAAAAAISYIKKTQMVNK-PTIGYPEREDI 286 + ++F S F + A A AI ++ M + + + Sbjct: 422 TDKSKSGAASESFRSGQLMAAITDFPKSVVVALAHAIKHMSAFGMADAFLETRFFSKFAT 481 Query: 287 QSTLFIDSAARSNLEILRTLS-GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKIN 345 ++ + + + SNLEI R + G+ + SL++ +D + T G RL + PL D + Sbjct: 482 RAHMLLGANTLSNLEIYRNETDGTAKGSLIEILDRTKTKFGARLLRNWVGHPLVDKRILQ 541 Query: 346 TRLDSINFFIQNP---ILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRS-- 400 R+D++ I++ +++ ++ +LK PD+ + LSR++ G+ P ++A++ Sbjct: 542 ERVDAVQEIIESSSERLMV--LRDVLKQLPDLAKGLSRIQYGQCTPPELAILLPAFNKIA 599 Query: 401 ----GINILN---LFLKNDLPEELRGAVEKLKKLPQSLEK--TLSSMLSDDLPTFKRDGG 451 G +I + + K+ L E+ + KLK+ Q L + L D + D Sbjct: 600 TAFDGDDISDASAVGFKSSLLNEIIFVLPKLKEPVQKLLRDINLRKATEDKKDSLWNDFD 659 Query: 452 FLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSAS 511 D ADA L + +++++ EE K I N +F T S Sbjct: 660 KYPDLADADL------------ALQAIEMELNEELKAGWSGI---NTFAHFPAHTVPSTK 704 Query: 512 VLKKDLESKDR--------FIHRQTMSNLTRFTT-------LELIDLENRITNATNSALL 556 + +E K + +I T L R+ E ++ R+ A N+A Sbjct: 705 TVTCLVEVKKKDKRPIPETWIVHSTTRTLARYQPPSVHAKLQEKAQMKERLEAAANAA-- 762 Query: 557 IELESFEILSNAIIEQSESL-DNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 F+ I + L +A +AI D +LA +A ++NY RP + Sbjct: 763 -----FQSFLQDIADNYYGLFRDAVNKLAIADCLFSLAHVALQENYVRPEFVEEDVIEIV 817 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 +GRHP++E+ P+I N + ++ ++TGPNMGGKS+ +R ALI I Sbjct: 818 EGRHPMIERL----RDTPYIPNSICMGGKKPRSK----IITGPNMGGKSSCVRTIALIAI 869 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+GSYVPA+ + ++D + +R+G++D++ G+STFMVEM ET IL+ AT++S VIL Sbjct: 870 MAQIGSYVPANSVRMKLMDSVLTRMGASDDITRGKSTFMVEMSETREILDAATDRSLVIL 929 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHEL-TDLSK----SLKRFHNA-- 788 DE+GRGT+T DG++IA AT+ YL E RC+ L TH+ + T L K L+ H A Sbjct: 930 DELGRGTSTFDGMAIADATLHYLVEAKRCKTLFITHYPMVATRLQKRFPSDLENLHMAYS 989 Query: 789 -TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVI 829 ++Q+ D I FL+ + G+A S+GI+ G+LAGLP ++ Sbjct: 990 TSVQI-DGTRTITFLYNLTSGLAPESFGIECGRLAGLPENLL 1030 >gi|39974299|ref|XP_368540.1| hypothetical protein MGG_00704 [Magnaporthe oryzae 70-15] gi|145018362|gb|EDK02641.1| hypothetical protein MGG_00704 [Magnaporthe oryzae 70-15] Length = 1218 Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 240/884 (27%), Positives = 423/884 (47%), Gaps = 117/884 (13%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P +QY EIK D++VF++ G FYEL+ +DA + + + LT R ++ M G Sbjct: 328 SPFEKQYWEIKQKLWDTVVFFKKGKFYELYENDATIGHQLFDLKLTDR-----VNMRMVG 382 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL--EAKKRG----NKS---LVRRNVVRLVTP 136 VP + + ++ + + G+++A +Q+ES L E ++RG NK ++RR + ++T Sbjct: 383 VPEASLDIWVNQFVAKGYKVARVDQMESALGKEMRERGGDKKNKKEDKIIRRELACILTG 442 Query: 137 GTLTEDQLLSPTDSNYLMAVARI----RTEWAIAWIDISTGIFKISTSNHD----RLISD 188 GTL E +L + + +A+ + IA++D +TG F IS D + + Sbjct: 443 GTLVEGSMLQDDMATFCVAIKESTINNHPAFGIAFVDAATGQFFISQFEDDVDLTKFETF 502 Query: 189 IMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA---QPNV-FFDHSIS--ESRIADYYN 242 + + PRE++ + +S + L + +P+ F D + E DY+ Sbjct: 503 VAQTSPRELLLEKSNISTKALRILKNNTSPTTIWNYLKPDSEFLDPETTRRELSCGDYFK 562 Query: 243 ITTVDTFGSFSQVEK-------------TAAAAAISYIK----KTQMVNKPTIGYPERED 285 + G ++V +A A + Y++ + ++++ + Sbjct: 563 VADG---GDETEVWPEALDKSRDKDLLMSAMGALVHYLRVLKLERSLLSQGNFEWYNPIH 619 Query: 286 IQSTLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKI 344 TL +D + NLE+ +++G E +L ++ IT G RLF + + PL + KI Sbjct: 620 RDGTLVLDGQSLINLEVFSNSVNGGPEGTLFNLLNRCITPFGKRLFRQWVCHPLCNIKKI 679 Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG---IRSG 401 N RLD+++ + ++ ++ PD+ R +SR+ G + +D + +G I Sbjct: 680 NERLDAVDMLNADRSILEQFSSLMSKMPDLERLISRIHAGVCKAEDFVRVLEGFEQIEYA 739 Query: 402 INILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLP-TFKR---DGGFLRD-- 455 +++L+ F + G V++L +SSML P TF + D +RD Sbjct: 740 MSMLSAFGGGN------GLVDRL----------ISSMLDLKEPLTFWKSAFDRKKVRDEK 783 Query: 456 ------GADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSS 509 G + DE+ + K+ + SL K K K+LK Y IE S+ Sbjct: 784 LLIPERGIEEDFDESADNIVRIKKDLQSLLDKQKAALKCKSLKFTDVGKEIYQIEAPKST 843 Query: 510 ASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA--TNSALLIELES-----F 562 + KD + S + R+ EL +L + A T+S ++ ++ + F Sbjct: 844 K--VPKD------WRQMSATSAVKRYYFRELDELVRELQEAEETHSQIVKDVAARFFKRF 895 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALAILAKE--QNYCRP-IIDNSTNFI-VKDGR 618 ++ I+ A ++I+ +D I LA + + CRP +D+ + + ++ R Sbjct: 896 DVDYAIWIQ-------AIRIISQLDCLICLAKASSSLGEPSCRPTFVDHERSVVEFEELR 948 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP + T+ FI ND L + + LLTG N GKST LR + + VIMAQ Sbjct: 949 HPCMLNTVDD-----FIPNDIKLG----GDDANINLLTGANAAGKSTVLRMSCIAVIMAQ 999 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +G YVPA A + VD++ SR+G+ DN+ + +STF VE+ ET IL++AT +S VILDE+ Sbjct: 1000 IGCYVPAVSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDEL 1059 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHEL-TDLSKSLK-RFHNATLQVSDSN 796 GRGT++ DG+++A A + ++ C G ATH+H L T+ + R +QV D+ Sbjct: 1060 GRGTSSYDGVAVAQAVLHHVASHIGCVGFFATHYHSLATEFENHPEIRAKRMQIQVDDAK 1119 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + FL+++ G+A+ S+G+ + G+ + VI RA K +E Sbjct: 1120 RRVTFLYRLEDGVAEGSFGMHCAAMCGISDRVIERAEVAAKEWE 1163 >gi|157841276|ref|NP_001103184.1| DNA mismatch repair protein Msh3 [Danio rerio] gi|123232732|emb|CAM16159.1| novel protein similar to vertebrate mutS homolog 3 (E. coli) (MSH3) [Danio rerio] Length = 1083 Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 254/949 (26%), Positives = 431/949 (45%), Gaps = 176/949 (18%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ QY+EIK + D+++ G Y F +DA +A++ L IT HL + Sbjct: 189 TPLEEQYMEIKKQHVDTVLCVECGYKYRFFGEDAEIAAKELNITC-----HLDHNFMTAS 243 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIES-PLEAKKRGNKSLVRRNVVRLVTPGTLT---- 140 +P H ++++L+ G+++ + +Q E+ ++A SL R + L T TL Sbjct: 244 IPTHRLFVHVRRLVSQGYKVGVVKQTETTAIKASSANKSSLFSRQLHALYTKSTLVGEDV 303 Query: 141 -----------EDQLLSPTDSNYLMAVA----RIRTEWAIAWI-------DISTGIFKIS 178 + ++ + +NYLM V+ + E + + D+ FK + Sbjct: 304 NPLLKLGDLEQAEDVVQDSGNNYLMCVSESFDKQSKELTVGMVVVQPSIGDVMVDCFKDN 363 Query: 179 TSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA------------QPNV 226 S H L S I+RI P EI+ +LS + L N+A++ + + Sbjct: 364 MS-HSELESRILRIQPVEILVP-SDLSETTER----LLRNIALSSVQADDRIRIEKRESA 417 Query: 227 FFDHSISESRIADYYNITTVDTFGSFSQV---EKTAAAAAISYIKKTQMVNKPTIGYPER 283 F++ + S I D+Y G S EK + + + P I Y Sbjct: 418 MFEYPTALSIIKDFYR------GGPHSAARNHEKGSYSICMGLESPIICCLGPVIQYLTE 471 Query: 284 EDIQSTLFIDS----------------AARSNLEIL-RTLSGSREQSLLKTIDYSITGAG 326 ++ L S A NLEIL +GS + SLL +D++ T G Sbjct: 472 FKLEKILLCSSSFKRLSSDPDHMLLSAATMKNLEILCNQTTGSVKGSLLWVLDHTQTLFG 531 Query: 327 GRLFAERIASPLTDSTKINTRLDSINFFIQNPILINP-IQKILKSSPDVPR--------- 376 RL + ++ PL I R +++ + + + P IQ +L PD+ R Sbjct: 532 KRLLRKWVSQPLKSVIDIQARQEAVAEILSSESSVLPSIQSLLTRLPDLERGLCSIYHKR 591 Query: 377 -------SLSRLKIGRGEPKDIAVIRDGIRSGIN--ILNLFLKNDLPEELRGAVEKLKKL 427 SLSRL + ++ + I+S ++ +L L D P+ L A LK L Sbjct: 592 EFYLIISSLSRLNV------ELQALMPAIQSQLSSPLLKTLLL-DTPQLLSPAHNFLKVL 644 Query: 428 PQSLEKT--LSSMLSD--DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 + KT + M D D P ++ ++ ++ L + R + + ++ + L Y Sbjct: 645 NEKAAKTGNKTEMFVDLTDFPVIRKT----KEEIESVLLDIMEHRREVRLLLKNPSLDY- 699 Query: 484 EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDL 543 T + + + IEV +S S++ D ++ + R+ T +++ Sbjct: 700 --TTVSGQQ--------FLIEVKNSMLSIVPAD------WVKISSTKVFGRYHTPFIVEK 743 Query: 544 ENRITNATNSALLIEL------------ESFEILSNAIIEQSESLDNASQVIAIIDISIA 591 R+ L+I+ + + IL A+ +A +D + Sbjct: 744 HRRL-QQLREQLVIDCNHEWINFLQLFGDHYYILRKAVCH-----------LATMDCLFS 791 Query: 592 LAILAKEQNYCRP-IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSG 650 LA +AKE NYCRP +++ + ++ G+HP++ + Q ++ ND L + Sbjct: 792 LAQVAKENNYCRPEVLEEKSQILITAGKHPVITSLMGDQDQ--YVPNDTHL----QGDGK 845 Query: 651 KLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGR 710 + ++TGPNMGGKS+++RQ AL+ IMAQ+GS+VPA A +GIVD ++ R+G++DN++ GR Sbjct: 846 RAMIITGPNMGGKSSYIRQVALVTIMAQLGSFVPAREASVGIVDGIYVRMGASDNISRGR 905 Query: 711 STFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLAT 770 STFM E++ET+ +L AT++S VILDE+GRGT+T DG++IA+AT+E RC L T Sbjct: 906 STFMEELLETSDVLACATSRSLVILDELGRGTSTHDGIAIAYATLESFIREVRCMTLFVT 965 Query: 771 HFHELTDLS----KSLKRFHNATL-----QVSDSNEG----IIFLHKVIPGIADHSYGIQ 817 H+ L +L + + +H A L SD E I FL+++I G A SYG+ Sbjct: 966 HYPPLCELEHLYPQHVGNYHMAFLLNEPESTSDEEEAQPEFITFLYQLIEGAAARSYGLN 1025 Query: 818 VGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNNL 866 V +LA +P +++ A K E L + R Y + T+ KN + Sbjct: 1026 VARLAEIPESILRTAAFKSKELEALV-----NSRRYVGRLVTQWKKNTV 1069 >gi|255101105|ref|ZP_05330082.1| DNA mismatch repair protein [Clostridium difficile QCD-63q42] Length = 399 Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 129/267 (48%), Positives = 186/267 (69%), Gaps = 7/267 (2%) Query: 580 SQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDC 639 ++ IA ID+ ++LA +A NY +P I+ + +++GRHP+VE + +++ F+ ND Sbjct: 2 AKTIANIDVFVSLATVAHINNYVKPAINENNKLDIRNGRHPVVENIVGEEN---FVPNDT 58 Query: 640 DLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSR 699 L ++ + ++TGPNM GKST++RQ A+I +MA +GS+VPA A I I+D++F+R Sbjct: 59 YL----NRGENIINIITGPNMSGKSTYMRQTAIIALMAHIGSFVPAESADIPILDRIFTR 114 Query: 700 VGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLH 759 VG++D+L+ G+STFMVEM E + IL AT +S VILDEIGRGT+T DG+S+AW+ +EY+ Sbjct: 115 VGASDDLSQGQSTFMVEMNEVSLILKNATERSLVILDEIGRGTSTYDGISLAWSIVEYIQ 174 Query: 760 ETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVG 819 + RC+ L ATH+HELTDL + K N ++ V + EGIIFL K+IP AD SYGI V Sbjct: 175 KNIRCKTLFATHYHELTDLEEEFKEVKNYSIAVKEDGEGIIFLRKIIPQGADKSYGIYVA 234 Query: 820 KLAGLPNTVISRAYDILKTFEKLYHHN 846 KLA LP+ VI RA ILK EK + +N Sbjct: 235 KLAKLPDEVIERAKYILKDLEKNHVYN 261 >gi|317038145|ref|XP_001401672.2| DNA mismatch repair protein Msh6 [Aspergillus niger CBS 513.88] Length = 1210 Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 227/865 (26%), Positives = 401/865 (46%), Gaps = 78/865 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P +QY EIK D++VF++ G FYEL+ +DA + + + LT R ++ M G Sbjct: 315 SPFEKQYWEIKQKFWDTVVFFKKGKFYELYENDATIGHQLFDLKLTDR-----VNMRMVG 369 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR---------GNKSLVRRNVVRLVTP 136 VP + +H+ + + G +IA +QIES L + R ++RR + ++T Sbjct: 370 VPEMSLDHWANQFVAKGFKIARVDQIESALGKEMRERDGKKGGGKEDKVIRRELSSVLTA 429 Query: 137 GTLTEDQLLSPTDSNYLMAVARI----RTEWAIAWIDISTGIFKISTSNHD----RLISD 188 GTL E +L S Y +A+ + + IA++D +TG F +S D + + Sbjct: 430 GTLVEGSMLQDDMSTYCVAIKEALIDDKPAFGIAFVDTATGQFFLSEFVDDVDMTKFETF 489 Query: 189 IMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA---QPNVFF---DHSISESRIADYYN 242 + + P+E++ + +S + L G + +P F D ++ E +++Y+ Sbjct: 490 VAQTRPQELLLEKSAVSQKALRILKNNTGPTTLWNYLKPVKEFWEADITVKELDVSEYFV 549 Query: 243 ITTVDTFGSFSQVEK---------TAAAAAISYIKKTQMVNK-PTIG-YPEREDIQ--ST 289 D ++ + + +A A + Y++ ++ TIG + + I+ ++ Sbjct: 550 SQDDDNLQAWPEALREARDKELVMSAFGALVQYLRLLKIERDLITIGNFTAYDPIKKATS 609 Query: 290 LFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRL 348 L +D N+EI + G E +L + ++ IT G R+F + + PL D+ KIN RL Sbjct: 610 LVLDGQTLINMEIFSNSFDGGSEGTLFQLLNRCITPFGKRMFKQWVCHPLVDANKINARL 669 Query: 349 DSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF 408 D+++ +P + + L PD+ R +SR+ + +D + +G ++L Sbjct: 670 DAVDALNADPTVRDQFSSQLTKMPDLERLISRVHAANCKAQDFLRVLEGFEQIEYTMSLL 729 Query: 409 LKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFL--RDGADASLDETRS 466 ++ E G + +L L + L + + R+ L + G + D ++ Sbjct: 730 KESGSAGE--GVIGQLISGMPDLNELLEYWKTAFDRSKARENSILVPKPGVEEDFDSSQE 787 Query: 467 LRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHR 526 +Q R + SL + +E + K N Y +EV ++ K + Sbjct: 788 NIEQIHRDLESLLKRVRKELGSSAIIYKDNGKEIYQLEVPIKVKNIPKN-------WDQM 840 Query: 527 QTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAII 586 + R+ EL L ++ A + I E E + A +++A + Sbjct: 841 SATKQVKRYYFPELRKLIRQLQEAQETHSQIVKEVAGRFYARFDENYTTWLAAVRIVAQL 900 Query: 587 D--ISIALAILAKEQNYCRPII--DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLS 642 D IS+A A + Q CRP+ D + ++ RHP + ++ FI ND L Sbjct: 901 DCLISLAKASSSLGQPSCRPVFVDDERSVLEFEELRHPCLISSVGD-----FIPNDVQLG 955 Query: 643 CPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGS 702 + LLTG N GKST LR + VIMAQ+G Y+P A + VD++ SR+G+ Sbjct: 956 G----THANIDLLTGANAAGKSTVLRMTCVAVIMAQIGCYLPCQSARLTPVDRIMSRLGA 1011 Query: 703 ADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETN 762 DN+ + +STF VE+ ET IL++AT +S VILDE+GRGT++ DG+++A A + ++ Sbjct: 1012 NDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVLHHVATHI 1071 Query: 763 RCRGLLATHFHELT-------DLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYG 815 G ATH+H L +++ R H V D + FL+K+ G+A+ S+G Sbjct: 1072 GALGFFATHYHSLAAEFEGHPEIAPKRMRIH-----VDDEERRVTFLYKLEDGVAEGSFG 1126 Query: 816 IQVGKLAGLPNTVISRAYDILKTFE 840 + + G+P+ VI RA K +E Sbjct: 1127 MHCAAMCGIPDKVIERAEVAAKQWE 1151 >gi|19114864|ref|NP_593952.1| MutS protein homolog 3 [Schizosaccharomyces pombe 972h-] gi|11230451|emb|CAB52164.2| MutS protein homolog 3 [Schizosaccharomyces pombe] Length = 1004 Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 241/906 (26%), Positives = 417/906 (46%), Gaps = 118/906 (13%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ +QY+E+K ++++ +G + F DA +AS LGI+ + + Sbjct: 104 TPLEQQYLELKKNYQETILAIEVGYKFRFFGKDAKIASEVLGISC-----YFEHNFLNAS 158 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESP-LEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 VP + ++++++LI G ++A+ Q E+ L++ +L R V R++T GT +D Sbjct: 159 VPSYRIDYHLERLINFGLKVAVVRQTETAALKSTSSSRNTLFDRRVARVLTKGTTLDDSF 218 Query: 145 L--------SPTDSNYLMAVA---------RIRTEWAIAWIDISTGIFKISTSNHDRLIS 187 + S +++ VA R + + I +S+G T+ +D Sbjct: 219 FRFEQTQHGTLQASQFILCVADNVDKSKAKSGRVQVGLIAIQLSSG-----TTVYDHFQD 273 Query: 188 DIMR---------IDPREIIFSEKELSHA-----EYKSLFETLGNVAVAQPNVFFDHSIS 233 D +R P E+I+S K S + Y S +T G V Q V D ++ Sbjct: 274 DFLRSELQTRLSHFQPCELIYSNKLSSESVALLNHYVSTEKTCGRVVRVQHAVQQDVKLA 333 Query: 234 ESRIADYYNITTV-----------DTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIG-YP 281 + D+++ + + S + AISY+ + + + + Sbjct: 334 LENLQDFFSSKCIMSGSKIIELHMEKVKSLHSLSIICLDMAISYLMEFSLEDLFVASNFY 393 Query: 282 EREDIQSTLFIDSAARSNLEI-LRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTD 340 + D S++ + A LE+ + + SL +D + T G R+ + PL D Sbjct: 394 QPFDSISSMVLSKQALEGLELFVNQTDHTPVGSLFWVLDRTYTRFGQRMLQRWLQKPLVD 453 Query: 341 STKINTRLDSINFFIQNP-ILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIR 399 I RLD++ N + I+K+L PD+ + LSR+ R P ++ + G Sbjct: 454 KENIIERLDAVEELAFNSNSQVQAIRKMLYRLPDLEKGLSRIYYQRCTPSEMFHVLKGFY 513 Query: 400 SGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADA 459 + F KN + A+ L++L Q L ++SS++ L F + + D Sbjct: 514 KAASA---FSKNSYSC-FKSAL--LRRLIQQL-PSISSIIDHFLGMFDQKEAENNNKVDM 566 Query: 460 SLD-------------------ETRSLRDQSKRIIASLQLKYAE---ETKIKNLKIKHNN 497 D E R L+ + + E + NL+ Sbjct: 567 FKDIDNFDLSEEPNDVDYELAQEIRELKMSILMVRTEMDFHLQELRDYLEYPNLEFSIWG 626 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLE----LIDLENRITNATNS 553 N+ + IEV+ + +I + +L RF T + LI+L + N T S Sbjct: 627 NVKFCIEVSKGCKKI-------PPDWIKLSSTRSLFRFHTPKIQSLLIELSSHEENLTIS 679 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + I + + I E L N + V+ +D I+ A ++ + Y RP + + Sbjct: 680 SEKI----YRSFLSRISEHYNELRNVTTVLGTLDCLISFARISSQSGYTRPEFSDK-ELL 734 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + + RHP++E S K F+ N LS + + L+TGPNMGGKS+F++Q AL Sbjct: 735 IHESRHPMIELL----SDKSFVPNHIHLS----SDGVRCLLITGPNMGGKSSFVKQLALS 786 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 IMAQ G +VPA A + I D + R+GS+DNL+ STFMVEM+ET +L++AT +S V Sbjct: 787 AIMAQSGCFVPAKSALLPIFDSILIRMGSSDNLSVNMSTFMVEMLETKEVLSKATEKSMV 846 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK----SLKRFHNAT 789 I+DE+GRGT+T+DG +I++A + YL++ + L THF L L + L+ FH Sbjct: 847 IIDELGRGTSTIDGEAISYAVLHYLNQYIKSYLLFVTHFPSLGILERRFEGQLRCFHMGY 906 Query: 790 LQVSDSNE-----GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYH 844 L+ + E I FL+K++PG+A SYG+ V ++AG+P +++SRA +I + +EK + Sbjct: 907 LKSKEDFETSVSQSISFLYKLVPGVASKSYGLNVARMAGIPFSILSRATEISENYEKKHR 966 Query: 845 HNQKDM 850 + +K++ Sbjct: 967 NARKNV 972 >gi|156837100|ref|XP_001642584.1| hypothetical protein Kpol_1075p4 [Vanderwaltozyma polyspora DSM 70294] gi|156113131|gb|EDO14726.1| hypothetical protein Kpol_1075p4 [Vanderwaltozyma polyspora DSM 70294] Length = 1251 Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 239/898 (26%), Positives = 411/898 (45%), Gaps = 123/898 (13%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 T +QY EIKS D +VF++ G F+EL+ DA+L + + + G+ ++ + G Sbjct: 320 TAFEKQYWEIKSKMWDCVVFFKKGKFFELYEKDAMLGNSLFDLKIAGGGR---ANMQLAG 376 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR-GNKSLVRRNVVRLVTPGTLTEDQL 144 +P + +++ + I+ G+++A +Q ES L + R G+K +V+R + ++T GTLT+ + Sbjct: 377 IPEMSFDYWSSQFIQYGYKVAKVDQRESMLAKEMREGSKGIVKRELECVLTSGTLTDGSM 436 Query: 145 LSPTDSNYLMAVARIRTE-----------------------WAIAWIDISTGIFKISTSN 181 L + Y MA IR E + +A+ID +TG ++ Sbjct: 437 LHSDLATYCMA---IREEPGNYYTCNDENIVSIEETMSKKIFGVAFIDTATGELQMLEFE 493 Query: 182 HDRLISD----IMRIDPREIIFSEKELSH----------------------AEYKSLFET 215 D+ S + +I P+E+I + LS+ E+ T Sbjct: 494 DDKECSKFDTLMSQIKPKEVIMEKNNLSNLAQKIVKFNSSPQAIFNYMKPGTEFYDFHRT 553 Query: 216 LGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNK 275 + + F + S + + YYN + QV +A ++Y+K ++ + Sbjct: 554 YDELLKPENAYFEEQSEWPTILQKYYN--------NGKQVGFSAFGGLLNYLKWLKLDSS 605 Query: 276 -PTIGYPEREDI---QSTLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLF 330 ++G + ++ Q ++ +D NLEI T GS + +L K + +IT G R Sbjct: 606 LISLGNMKEYNLIKSQHSMILDGVTLQNLEIFSNTFDGSDKGTLFKLFNRAITPMGKRTM 665 Query: 331 AERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKD 390 + PL I+ RLDS+ + +P+L + + L PD+ R LSR+ G + KD Sbjct: 666 RTWVMHPLLHKADIDKRLDSVEQLLDDPVLRDLFESHLSKIPDLERLLSRIHAGTVKMKD 725 Query: 391 IAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDG 450 + G + + +L + L V ++ P+SL + ++ + F R+ Sbjct: 726 FDKVIQGFETIVKLLTKISNQNFNGALGVFVSQI---PESLFQDVAKWTN----AFDREK 778 Query: 451 GFLRD------GADASLDETRSLRDQSKRIIASLQ---LKYAEETKIKNLKIKHNNNLGY 501 + D G + DE+ D+ K I L +Y +E K + K + Y Sbjct: 779 AIVEDVMEPHSGVEPEFDESL---DKIKGIEEDLNDHLRRYKKEFKCSTIHFKDSGKEIY 835 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELES 561 IEV ++ ++ ++ + R+ + E+ L + A S +IE + Sbjct: 836 TIEVPMAATKLIPSS------WMQMGANKSSKRYYSEEVSKLARSMAEARESHKIIEQD- 888 Query: 562 FEILSNAIIEQSESLDNAS-----QVIAIIDISIALAILAKEQNY--CRPI----IDNST 610 L N + ++ S S + I+ ID IALA ++ CRP ID +T Sbjct: 889 ---LKNRLSKKFHSHYKTSWMPTIEAISKIDCLIALARTSESLGAPSCRPQLVDEIDPAT 945 Query: 611 N------FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 K RHP L S K FI ND +L K+ +L LLTG N GKS Sbjct: 946 GAKLNGYLKFKSLRHPCF--NLGSTSIKEFIPNDIELG----KDVPQLGLLTGANAAGKS 999 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 T LR + VIMAQ+G YVP A + VDK+ +R+G+ DN+ G+STF+VE+ ET IL Sbjct: 1000 TILRMTCVAVIMAQIGCYVPCESATMTPVDKIMTRLGANDNIMQGKSTFLVELSETKKIL 1059 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR 784 + ATN+S ++LDE+GRG ++ DG +IA + + ++ + G ATH+ L K + Sbjct: 1060 DVATNRSLLVLDELGRGGSSNDGFAIAESVLYHVATHMQSLGFFATHYGSLGLSFKGHPQ 1119 Query: 785 FH--NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 ++ V + I FL+K++ G ++ S+G+ V + G+P ++ A +T+E Sbjct: 1120 VRPLKMSILVDEGTRNITFLYKLVEGQSEGSFGMHVASMCGIPKKIVDNAQVAAETYE 1177 >gi|145348063|ref|XP_001418476.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144578705|gb|ABO96769.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 1113 Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 249/902 (27%), Positives = 403/902 (44%), Gaps = 112/902 (12%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P Q+ + K+ N DS++ ++MG FYE+F DA + R LG+ + RG+ P G Sbjct: 166 SPGQAQWWKFKAANFDSVLLFKMGKFYEMFEMDAHIGVRDLGL-MYMRGEQ-----PHAG 219 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKS------LVRRNVVRLVTPGTL 139 P + ++L + GHR+ EQ E+P + +R K +VRR +V+++T GT+ Sbjct: 220 FPEKNYAMHAEQLARNGHRVVCIEQTETPAQLAERKKKDKTCKDTVVRREMVQVLTKGTM 279 Query: 140 TEDQLL-SPTDSNYLMAVA-RIRTEWAIAWI-----DISTGIFKISTSNHDR----LISD 188 + +L S D+ ++ ++ E W+ D TG F + D L + Sbjct: 280 VDTGMLNSSPDAAFVCSIIDGCEEEDGEGWVGLCAADCGTGRFLVGAWRDDEGASCLRTA 339 Query: 189 IMRIDPREIIFSEKELS------------HAEYKSLFETLGNVAV--AQPNVFFD----- 229 + + P EI+ LS HA+ ++ T N A+ A+ +F Sbjct: 340 LAELRPVEILVPPTGLSARAKMAVLDMCSHAQQRTFKSTSANEALEDAEAEGYFKTLKTG 399 Query: 230 --HSISESRIADYYNITTVDTFGSFSQVEKTAAAAAIS--YIKKTQMVNKPTIGYPERED 285 +I E R + G++ V AA I + + ++ + T RE Sbjct: 400 LPEAIKEMRDTACHPARECG-IGAWGTVVAYLRAALIDADLVPQGRVESLHTTDAGAREH 458 Query: 286 I-----QSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTD 340 + + + +D+AA S LE+L +G +LL ++D ++G G RL + PLT Sbjct: 459 LARWAHSTHVAMDAAALSGLEVLENTAGGSAGTLLASLDRCVSGPGRRLLRRWVCRPLTS 518 Query: 341 STKINTRLDSINFFIQNPILINPI-QKILKSSPDVPRSLSRLKIGRGE----PKDIAVIR 395 ++ I R +++ I I +K+L+++PD R++SR+ GE + + Sbjct: 519 ASAIRARQVAVSMMRGCGIEATGIARKLLRAAPDAERAISRVVGSSGEKGRSASHVVLYE 578 Query: 396 DGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT--LSSMLSDDLPTFKRDGGFL 453 D R+ +N L+ +R A + + + EK+ L ++ + R+ F Sbjct: 579 DAARAKLNDFLAALEG--IRAVRDATKAIAACVDACEKSDVLRALCIVNDAAATREDVFT 636 Query: 454 RDGADA-----SLDETRSLRD-----QSKRI-----------IASLQLKYAEETKIKNLK 492 G A +LDE S D S RI A QL A+ L+ Sbjct: 637 AVGGVAMPDLSALDEMESAFDWNAAKSSGRIEPAQGVDADLDAAEEQLTAADADLASWLE 696 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDR--------FIHRQTMSNLTRFTTLELIDLE 544 G+ EV +A+ +E DR ++ RFT +L+ L Sbjct: 697 EARGELGGHKTEVCFVNANKDTHLVEVPDRLASKVPHHWVREGKRKGYERFTCDDLVPLR 756 Query: 545 NRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQ-NYCR 603 + A + F + E + A+ V AIID+ +LA++++E C Sbjct: 757 AKRVAAEEAREDALAGVFRRIVAKFCENASEWQAAASVGAIIDVLASLAVVSEEMYASCG 816 Query: 604 PIIDNSTNFIVKDGRHPIVEKT-----LKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGP 658 + + +DG +E ++ F+ ND L K+ G L+TGP Sbjct: 817 AVCTPKVHPQPRDGEPATLESVGLSHPCASSLARAFVPNDARL---GGKHPG-FCLITGP 872 Query: 659 NMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMI 718 NMGGKST+LRQ L IMA +G+ VPA+ + +D +F R+G+ DNLA G+STFMVE+ Sbjct: 873 NMGGKSTYLRQVCLAAIMAHVGADVPAAKFEMTAMDAVFVRMGAKDNLAGGQSTFMVELS 932 Query: 719 ETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTD- 777 ET ++L +AT S V LDE+GRGTAT DG +IA A +L + RCR L +TH+H L D Sbjct: 933 ETGAMLRRATTNSLVALDELGRGTATADGTAIACAVASHLID-KRCRTLFSTHYHRLADD 991 Query: 778 --LSKSLKRFHNATLQVSDSNEG--------IIFLHKVIPGIADHSYGIQVGKLAGLPNT 827 + H A + S G + FL+ + G SYG+ V +LAGLP + Sbjct: 992 HARDPHVALAHMACRVETPSGAGVETLGRETVTFLYTLASGNCPRSYGVNVARLAGLPES 1051 Query: 828 VI 829 V Sbjct: 1052 VC 1053 >gi|134058585|emb|CAK44621.1| unnamed protein product [Aspergillus niger] Length = 1193 Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 227/865 (26%), Positives = 401/865 (46%), Gaps = 78/865 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P +QY EIK D++VF++ G FYEL+ +DA + + + LT R ++ M G Sbjct: 298 SPFEKQYWEIKQKFWDTVVFFKKGKFYELYENDATIGHQLFDLKLTDR-----VNMRMVG 352 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR---------GNKSLVRRNVVRLVTP 136 VP + +H+ + + G +IA +QIES L + R ++RR + ++T Sbjct: 353 VPEMSLDHWANQFVAKGFKIARVDQIESALGKEMRERDGKKGGGKEDKVIRRELSSVLTA 412 Query: 137 GTLTEDQLLSPTDSNYLMAVARI----RTEWAIAWIDISTGIFKISTSNHD----RLISD 188 GTL E +L S Y +A+ + + IA++D +TG F +S D + + Sbjct: 413 GTLVEGSMLQDDMSTYCVAIKEALIDDKPAFGIAFVDTATGQFFLSEFVDDVDMTKFETF 472 Query: 189 IMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA---QPNVFF---DHSISESRIADYYN 242 + + P+E++ + +S + L G + +P F D ++ E +++Y+ Sbjct: 473 VAQTRPQELLLEKSAVSQKALRILKNNTGPTTLWNYLKPVKEFWEADITVKELDVSEYFV 532 Query: 243 ITTVDTFGSFSQVEK---------TAAAAAISYIKKTQMVNK-PTIG-YPEREDIQ--ST 289 D ++ + + +A A + Y++ ++ TIG + + I+ ++ Sbjct: 533 SQDDDNLQAWPEALREARDKELVMSAFGALVQYLRLLKIERDLITIGNFTAYDPIKKATS 592 Query: 290 LFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRL 348 L +D N+EI + G E +L + ++ IT G R+F + + PL D+ KIN RL Sbjct: 593 LVLDGQTLINMEIFSNSFDGGSEGTLFQLLNRCITPFGKRMFKQWVCHPLVDANKINARL 652 Query: 349 DSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF 408 D+++ +P + + L PD+ R +SR+ + +D + +G ++L Sbjct: 653 DAVDALNADPTVRDQFSSQLTKMPDLERLISRVHAANCKAQDFLRVLEGFEQIEYTMSLL 712 Query: 409 LKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFL--RDGADASLDETRS 466 ++ E G + +L L + L + + R+ L + G + D ++ Sbjct: 713 KESGSAGE--GVIGQLISGMPDLNELLEYWKTAFDRSKARENSILVPKPGVEEDFDSSQE 770 Query: 467 LRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHR 526 +Q R + SL + +E + K N Y +EV ++ K + Sbjct: 771 NIEQIHRDLESLLKRVRKELGSSAIIYKDNGKEIYQLEVPIKVKNIPKN-------WDQM 823 Query: 527 QTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAII 586 + R+ EL L ++ A + I E E + A +++A + Sbjct: 824 SATKQVKRYYFPELRKLIRQLQEAQETHSQIVKEVAGRFYARFDENYTTWLAAVRIVAQL 883 Query: 587 D--ISIALAILAKEQNYCRPII--DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLS 642 D IS+A A + Q CRP+ D + ++ RHP + ++ FI ND L Sbjct: 884 DCLISLAKASSSLGQPSCRPVFVDDERSVLEFEELRHPCLISSVGD-----FIPNDVQLG 938 Query: 643 CPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGS 702 + LLTG N GKST LR + VIMAQ+G Y+P A + VD++ SR+G+ Sbjct: 939 G----THANIDLLTGANAAGKSTVLRMTCVAVIMAQIGCYLPCQSARLTPVDRIMSRLGA 994 Query: 703 ADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETN 762 DN+ + +STF VE+ ET IL++AT +S VILDE+GRGT++ DG+++A A + ++ Sbjct: 995 NDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVLHHVATHI 1054 Query: 763 RCRGLLATHFHELT-------DLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYG 815 G ATH+H L +++ R H V D + FL+K+ G+A+ S+G Sbjct: 1055 GALGFFATHYHSLAAEFEGHPEIAPKRMRIH-----VDDEERRVTFLYKLEDGVAEGSFG 1109 Query: 816 IQVGKLAGLPNTVISRAYDILKTFE 840 + + G+P+ VI RA K +E Sbjct: 1110 MHCAAMCGIPDKVIERAEVAAKQWE 1134 >gi|302890002|ref|XP_003043886.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256724804|gb|EEU38173.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 1201 Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 237/872 (27%), Positives = 419/872 (48%), Gaps = 90/872 (10%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K +P QY EIK D++VF++ G FYEL+ +DA + + +T R ++ Sbjct: 315 KKFSPFETQYWEIKQNLWDTIVFFKKGKFYELYENDATVGHQEFDFKMTDR-----VNMR 369 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPL--EAKKRGNKS------LVRRNVVRLV 134 M GVP + ++++ + I +++A +Q+E+ L E ++R +KS ++ R + ++ Sbjct: 370 MVGVPESSLDYWVNQFIAKQYKVARVDQMETNLGKEMRERQDKSGKKADKIITRELACVL 429 Query: 135 TPGTLTEDQLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFKISTSNHD----RLI 186 T GTL + +L ++Y +A+ + + IA+ D +TG F +S+ D + Sbjct: 430 TAGTLVDGGMLQDDMASYCVAIKESVVDDLPAFGIAFADTATGRFYLSSFVDDVDLTKFE 489 Query: 187 SDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA---QPNVFF---DHSISESRIADY 240 + I + PRE++ + +LS + L + +P+ F D + E Y Sbjct: 490 TLIAQTGPRELVLEKSKLSTKALRILKNNTSPTTIWTHLKPDTEFWDADTTRRELGCGKY 549 Query: 241 YNITTVD------TFGSF--SQVEKTAAAAAISYIKKTQMVNKPTI--GYPERED-IQ-- 287 + + +D F + +A A +SY++ ++ +P + G ER + IQ Sbjct: 550 FKVKDIDDEVWPEALQQFRDDDIVMSAVGALVSYLRFLKL-ERPLLSQGNFERYNPIQKN 608 Query: 288 STLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINT 346 TL +D NLE+ +++G E +L ++ IT G RLF +A PL + +IN Sbjct: 609 GTLVLDGQTLINLEVFSNSVNGGTEGTLFSLLNKCITPFGKRLFRSWVAHPLCNIDRINE 668 Query: 347 RLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG---IRSGIN 403 RLD++ + + L PD+ R +SR+ G +P+D + +G I ++ Sbjct: 669 RLDAVEMLNADQGVREDFASQLVKMPDLERLISRIHAGACKPEDFVKVLEGFEQIEYTMS 728 Query: 404 ILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFL--RDGADASL 461 +L F + G V++L +LE+ LS S RD L G + Sbjct: 729 LLGAFKGGN------GLVDRLISSMPNLEEPLSFWRSAFDRRKARDDKLLIPERGIEEDF 782 Query: 462 DETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKD 521 DE+ ++ K+ + L + +E K K L + Y +E K ++ Sbjct: 783 DESADRIEEIKQQLDELLAEKKKEFKCKLLNYRDVGKEIYQLEAP--------KSVKVPS 834 Query: 522 RFIHRQTMSNLTRFTTLELIDLENRITNA--TNSALLIELES-----FEILSNAIIEQSE 574 + ++ R+ +L L + A T+S L+ ++ S F++ E Sbjct: 835 NWRQMSATKDVKRYYFPQLSQLVRELQEAEETHSQLVRDVASRFFKKFDV-------DYE 887 Query: 575 SLDNASQVIAIIDISIALAILAKEQNY--CRP-IIDNSTNFI-VKDGRHPIVEKTLKQQS 630 + A ++I+ +D ++LA + + CRP ++D + + ++ RHP + T+ Sbjct: 888 TWLQAIKIISQLDCLVSLAKASASLGHPSCRPQLVDQERSTVDFQELRHPCMMNTVDD-- 945 Query: 631 SKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHI 690 FI ND L + LLTG N GKST LR + + VIMAQ+G +VPA+ A + Sbjct: 946 ---FIPNDIKLG----GEQANINLLTGANAAGKSTVLRMSCIAVIMAQIGCFVPATSARL 998 Query: 691 GIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSI 750 VD++ SR+G+ DN+ + +STF VE+ ET IL++AT +S VILDE+GRGT++ DG+++ Sbjct: 999 TPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAV 1058 Query: 751 AWATIEYLHETNRCRGLLATHFHEL-TDLSKSLK-RFHNATLQVSDSNEGIIFLHKVIPG 808 A A + ++ C G ATH+H L T+ + R + V D + FL+K+ G Sbjct: 1059 AQAVLHHVATHIGCVGFFATHYHSLATEFENHPEIRARRMQIHVDDEERRVTFLYKLEDG 1118 Query: 809 IADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 +A+ S+G+ + G+ + VI RA K +E Sbjct: 1119 VAEGSFGMHCAAMCGISSRVIDRAEVAAKEWE 1150 >gi|119500868|ref|XP_001267191.1| DNA mismatch repair protein Msh6, putative [Neosartorya fischeri NRRL 181] gi|119415356|gb|EAW25294.1| DNA mismatch repair protein Msh6, putative [Neosartorya fischeri NRRL 181] Length = 1214 Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 233/874 (26%), Positives = 403/874 (46%), Gaps = 96/874 (10%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P +QY EIK D++VF++ G FYEL+ +DA + + + LT R ++ M G Sbjct: 320 SPFEKQYWEIKQKFWDTVVFFKKGKFYELYENDATIGHQLFDLKLTDR-----VNMRMVG 374 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL-------EAKKRGNKS--LVRRNVVRLVTP 136 VP + +H+ + + G +IA +Q ES L + KK G K +++R + ++T Sbjct: 375 VPEMSLDHWANQFVAKGFKIARVDQSESALGKEMRERDGKKSGGKEDKIIKRELSCVLTA 434 Query: 137 GTLTEDQLLSPTDSNYLMAVARI----RTEWAIAWIDISTGIFKISTSNHD----RLISD 188 GTL E +L S Y +A+ R + +A++D +TG F +S D + + Sbjct: 435 GTLVEGSMLQDDMSTYCVAIKEAIIDDRPAFGLAFVDTATGQFSLSEFVDDVDMTKFETF 494 Query: 189 IMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA---QPNVFF---DHSISESRIADYYN 242 + + P+E++ + +S + L G + +P F D ++ E ++Y+ Sbjct: 495 VAQTRPQELLLEKSTISQKALRILKNNTGPTTIWNHLKPGKEFWEADITVKELDASEYFV 554 Query: 243 ITTVDTFGSFSQVEK---------TAAAAAISYIKKTQM-VNKPTIGY-----PEREDIQ 287 D ++ + + +A A + Y++ ++ + TIG P R+ Sbjct: 555 SQDDDNLQAWPEPLREARDKELVMSAFGALVQYLRVLKLDRDLITIGNFSWYDPIRK--A 612 Query: 288 STLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINT 346 S+L +D N+EI + G E +L + ++ IT G R+F + + PL D+ KIN Sbjct: 613 SSLVLDGQTLINMEIFANSFDGGSEGTLFQLLNRCITPFGKRMFKQWVCHPLMDAKKINA 672 Query: 347 RLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILN 406 RLD+++ + + + L PD+ R +SR+ + +D + +G + Sbjct: 673 RLDAVDALNADSSVRDQFSSQLTKMPDLERLISRIHAANCKAQDFVRVLEGFEQIEYTIT 732 Query: 407 LFLKNDLPEELRGAVEKL-KKLPQSLEKTLSSMLSDDLPTFKR----DGGFL--RDGADA 459 L D G + +L +P LSS+L F R + G L + G + Sbjct: 733 LL--KDSGSSGEGVIGQLISGMPD-----LSSLLEYWKTAFDRTKAKENGILVPKPGVEE 785 Query: 460 SLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLES 519 D ++ +Q R + +L + E + + N Y +EV ++ K Sbjct: 786 DFDTSQERIEQLHRDLDNLLKRQRRELGSTAICYRDNGKEIYQLEVPIKVKNIPKN---- 841 Query: 520 KDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNA 579 + + R+ EL L ++ A + I E E + A Sbjct: 842 ---WDQMSATKQVKRYYFPELRSLIRKLQEAQETHSQIVKEVAGRFYARFDENYTTWLAA 898 Query: 580 SQVIAIIDISIALAILAKEQNY--CRPII--DNSTNFIVKDGRHPIVEKTLKQQSSKPFI 635 ++I+ +D I+LA + + CRP+ D + ++ RHP + +++ FI Sbjct: 899 VRIISQLDCLISLAKASSSLGHPSCRPVFVEDERSVLEFEELRHPCLLSSVED-----FI 953 Query: 636 ANDCDLS--CPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIV 693 ND L PN + LLTG N GKST LR + VIMAQ+G Y+P A + V Sbjct: 954 PNDVRLGGEVPN------INLLTGANAAGKSTVLRMTCIAVIMAQIGCYLPCQSARLTPV 1007 Query: 694 DKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWA 753 D++ SR+G+ DN+ + +STF VE+ ET IL++AT +S VILDE+GRGT++ DG+++A A Sbjct: 1008 DRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQA 1067 Query: 754 TIEYLHETNRCRGLLATHFHELT-------DLSKSLKRFHNATLQVSDSNEGIIFLHKVI 806 + ++ G ATH+H L +++ + H V D I FL+K+ Sbjct: 1068 VLHHVATHIGAMGFFATHYHSLAAEFDGHPEITPKRMKIH-----VDDEERRITFLYKLE 1122 Query: 807 PGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 G+A+ S+G+ + G+PN VI RA K +E Sbjct: 1123 DGVAEGSFGMHCASMCGIPNKVIERAEVAAKQWE 1156 >gi|156057209|ref|XP_001594528.1| hypothetical protein SS1G_04335 [Sclerotinia sclerotiorum 1980] gi|154702121|gb|EDO01860.1| hypothetical protein SS1G_04335 [Sclerotinia sclerotiorum 1980 UF-70] Length = 1246 Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 235/882 (26%), Positives = 402/882 (45%), Gaps = 109/882 (12%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP +QY EIK D+++F++ G FYEL+ DA + + + LT R ++ M G Sbjct: 341 TPFEKQYWEIKQKCWDTILFFKKGKFYELYERDATIGHQIFDLKLTDR-----VNMSMVG 395 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR-----------GNK--SLVRRNVVR 132 VP + H+ + + G+++A+ +Q ES L + R G K ++ R + Sbjct: 396 VPEMSLQHWANQFLAKGYKVAVGDQKESALAKEMREREDSAGPSSKGKKPDKIIHRELSY 455 Query: 133 LVTPGTLTEDQLLSPTDSNYLMAVARIRTE-----WAIAWIDISTGIFKISTSNHD---- 183 ++T GTL E +L + Y +A+ T+ + I+++D STG F +S D Sbjct: 456 ILTAGTLVEGSMLQDDSATYCVAIKESITDDNLPAFGISFVDTSTGQFFLSEFTDDVDLT 515 Query: 184 RLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISES-------- 235 + + + +I P+E++ + +S + L G P +++ SE Sbjct: 516 KFETFVAQIRPQELLLEKSCVSTKVLRILKNNTG------PTTVWNYLKSEKEFLTAEKS 569 Query: 236 -RIADYYNITTVDTFGSFSQVEK-----------TAAAAAISYIKKTQM----VNKPTIG 279 R DY G + E+ +A A Y+K Q+ + + Sbjct: 570 RRELDYGGYFASGDGGKETWPEELEKARDNDLLISAFGALFQYLKVLQLEKALLTQGNFA 629 Query: 280 YPEREDIQSTLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPL 338 + +TL +D NLEI T G+ + +L +D T G RLF + ++ PL Sbjct: 630 WYNPIQKGTTLVLDGQTLINLEIFSNTFDGNTDGTLYTLLDRCTTPFGKRLFRQWVSHPL 689 Query: 339 TDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 +D +IN RLD+++ ++ L + + PD+ R +SR+ G P+D + +G Sbjct: 690 SDIKRINERLDAVDLLNKDDNLSRSFKSSTSTLPDLERLISRIHAGSCRPEDFLKVLEGF 749 Query: 399 RSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRD--- 455 I L N G +L ++ L+D L +K F R Sbjct: 750 EQIEYIQKEILGN-----YSGGDGVFSRLVATIPN-----LADPLQWWK--NAFDRKKAK 797 Query: 456 ---------GADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVT 506 G + D ++ ++ + +ASL KY ++ K ++ K+ Y +++ Sbjct: 798 EDKILVPERGVEEDFDASQDRIEEIHQELASLLKKYQKKYDSKKIEFKNIGKEIYQLQMP 857 Query: 507 SSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDL--ENRITNATNSALLIELESFEI 564 S ++ + + S R+ EL ++ + + T T+ ++ ++ S Sbjct: 858 VS--------IKVPNDWKMMSAASGFKRYYFPELTNIIRDLQETQETHGQIVKQVAS--R 907 Query: 565 LSNAIIEQSESLDNASQVIAIID--ISIALAILAKEQNYCRPIIDNSTNFIVK--DGRHP 620 E E A + +A +D S+A A A CRP +S +V+ + RHP Sbjct: 908 FYARFDEDYEIWLQAVKTVAQLDCLFSLAAASSALGTPSCRPKFVDSERSVVEFEELRHP 967 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 + + FI ND L S + LLTG N GKST LR + VIMAQ+G Sbjct: 968 CILPNVTD-----FIPNDVQLG----GKSANINLLTGANAAGKSTILRMTCVAVIMAQLG 1018 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 YVPA A + VD++ SR+G+ DN+ + +STF VE+ ET IL++AT++S VILDE+GR Sbjct: 1019 CYVPAKSATLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATSRSLVILDELGR 1078 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA--TLQVSDSNEG 798 GT++ DG+S+A A + ++ C G ATH+H L S N ++V D + Sbjct: 1079 GTSSYDGVSVAQAVLHHVASHIGCIGFFATHYHSLALEFDSHPEVINKRMAIEVDDESRS 1138 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 ++FL+K+ G+A+ S+G+ + G+P V+ RA + +E Sbjct: 1139 VLFLYKLENGVAEGSFGMHCASMCGIPRKVVDRAEVAAREWE 1180 >gi|255936397|ref|XP_002559225.1| Pc13g07990 [Penicillium chrysogenum Wisconsin 54-1255] gi|211583845|emb|CAP91868.1| Pc13g07990 [Penicillium chrysogenum Wisconsin 54-1255] Length = 1207 Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 230/869 (26%), Positives = 404/869 (46%), Gaps = 86/869 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P +QY EIK D++VF++ G FYEL+ +DA + + + LT R ++ M G Sbjct: 312 SPFEKQYWEIKQKFWDTVVFFKKGKFYELYENDATIGHQLFDLKLTDR-----VNMRMVG 366 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL--EAKKRGNKS------LVRRNVVRLVTPG 137 VP + +H+ + + G +IA +Q ES L E ++R K +++R + ++T G Sbjct: 367 VPEMSLDHWANQFVAKGFKIARVDQSESALGKEMREREGKKPTKDDKIIKRELACVLTAG 426 Query: 138 TLTEDQLLSPTDSNYLMAVAR----IRTEWAIAWIDISTGIFKISTSNHD----RLISDI 189 TL E +L S Y +A+ R + IA++D +TG F +S D + + + Sbjct: 427 TLVEGSMLQDDMSTYCVAIKEGIVDERPAFGIAFVDTATGQFFMSEFVDDVDLTKFETFV 486 Query: 190 MRIDPREIIFSEKELSHAEYKSLFETLGNVAV---AQPNVFF---DHSISESRIADYYNI 243 + PRE++ + +S + L + +P F D ++ E ++Y+ Sbjct: 487 AQTRPRELLLEKSCVSQKAMRILKNNTDPTTIWNFMKPGREFWESDITLRELDASEYFVS 546 Query: 244 TTVDTFGSFSQV-----EK----TAAAAAISYIKKTQMVNK-PTIG-YPEREDIQ--STL 290 D ++ + EK +A A + Y++ ++ TIG + + I+ ++L Sbjct: 547 VDDDNLAAWPETLRQAREKELLMSAFGALVQYLRMLKIERDLITIGNFTWYDPIKKATSL 606 Query: 291 FIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLD 349 +D N+EI + G E +L + ++ IT G R+F + + PL DS KIN RLD Sbjct: 607 VLDGQTLINMEIFANSFDGGSEGTLFQLLNRCITPFGKRMFKQWVCHPLVDSKKINARLD 666 Query: 350 SINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFL 409 +++ +P + L PD+ R +SR+ G + +D + +G + L Sbjct: 667 AVDSLNADPSTRDQFSSQLTKMPDLERLISRIHAGNCKAQDFVRVLEGFEQIDYTMGLLK 726 Query: 410 KNDLPEELRGAVEKLKKLPQSLEKTLSSML-----SDDLPTFKRDGGFLRD-GADASLDE 463 ++D G+ E + + L+S+L + D P K +G + + G + D Sbjct: 727 ESDT-----GSGESIIGQLTTAMPDLASLLGYWKTAFDRPKAKENGILVPESGVEEDFDN 781 Query: 464 TRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRF 523 ++ +Q R + +L K + + + N Y +EV ++ K + Sbjct: 782 SQENIEQLHRDLDTLLKKARRDLGSSAICYRDNGKEIYQLEVPIKVKNIPKD-------W 834 Query: 524 IHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVI 583 + R+ EL L ++ A + I E E + A +++ Sbjct: 835 NQMSATKQVKRYYFPELRSLIRKLQEAQETHSQIVKEVAGRFHARFDEHYSTWLAAVRIV 894 Query: 584 AIID--ISIALAILAKEQNYCRPII--DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDC 639 + +D IS+A A A CRP+ D + ++ RHP + +++ FI ND Sbjct: 895 SQLDCLISLAKASAAIGHPSCRPVFVDDERSVLEFEELRHPCLLSSVED-----FIPNDI 949 Query: 640 DLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSR 699 L + + LLTG N GKST LR + VIMAQ+G Y+P A + VD++ SR Sbjct: 950 QLGGKH----ASIDLLTGANAAGKSTVLRMTCVAVIMAQIGCYLPCQSARLTPVDRIMSR 1005 Query: 700 VGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLH 759 +G+ DN+ + +STF VE+ ET IL++AT +S VILDE+GRGT++ DG+++A A + ++ Sbjct: 1006 LGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVLHHIA 1065 Query: 760 ETNRCRGLLATHFHELTDLSKSLKRFHN--------ATLQVSDSNEGIIFLHKVIPGIAD 811 G ATH+H L F N + V D + FL+K+ G+A+ Sbjct: 1066 THIGALGFFATHYHSLA------AEFENHPEIAPKRMAIHVDDVERRVAFLYKLEDGVAE 1119 Query: 812 HSYGIQVGKLAGLPNTVISRAYDILKTFE 840 S+G+ + G+P+ VI A + + +E Sbjct: 1120 GSFGMHCASMCGIPSKVIECAENAAQQWE 1148 >gi|240275518|gb|EER39032.1| MutS2 protein [Ajellomyces capsulatus H143] gi|325091354|gb|EGC44664.1| MutS2 protein [Ajellomyces capsulatus H88] Length = 999 Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 147/364 (40%), Positives = 213/364 (58%), Gaps = 11/364 (3%) Query: 476 ASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTR- 534 + L K E NL +K LG+ + + AS + R + + S TR Sbjct: 620 SELTKKLREAAGTDNLNLKWTPGLGHIVHMKGVKASQQSVEALGATRTV---SSSKSTRS 676 Query: 535 FTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAI 594 F L RI +A L E FE L A+I L + V+ +D++ + A Sbjct: 677 FYLSSWSQLGARIDDAKFHILSEEQRIFEELRQAVILNLVKLRRNAAVLDELDVACSFAR 736 Query: 595 LAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWL 654 LA+EQ RP+++NS + GRHP V+ L++Q +PF++NDC + ++WL Sbjct: 737 LAEEQQMVRPVVNNSKCHKIVGGRHPTVKLGLEEQG-RPFVSNDCFIG-----EQERIWL 790 Query: 655 LTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFM 714 +TGPNMGGKSTFLRQNALI I+AQ+GS+VPA YA IG+VD++FSR+G+AD+L +STFM Sbjct: 791 ITGPNMGGKSTFLRQNALITILAQVGSFVPAEYAEIGVVDQIFSRIGAADDLFRDQSTFM 850 Query: 715 VEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHE 774 +EM+ETA+IL AT +SFVI+DE+GRGT DG ++ +A + +LH N+CR L ATHFH Sbjct: 851 LEMLETATILKSATTRSFVIMDEVGRGTTPEDGTAVGFACLHHLHNINQCRTLFATHFHA 910 Query: 775 LTDLSKSLKRFHNATLQV-SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAY 833 L D++ + V DS+ F H++ G+ S+ ++V +LAGLP I A Sbjct: 911 LADMTAQYEHLGRYCTDVKEDSSGSFSFDHRLRRGVNRESHALKVARLAGLPGVAIDVAK 970 Query: 834 DILK 837 D+L+ Sbjct: 971 DVLR 974 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 106/407 (26%), Positives = 192/407 (47%), Gaps = 49/407 (12%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 + ++ R+G+FYEL+F+ A + L + L ++ G +PM G P + +++ L++ Sbjct: 93 NCVLLTRVGNFYELYFEQAEEYATLLNLKLAQKKTSAGA-VPMAGFPFFQLDRFLKILVQ 151 Query: 101 -IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAV--A 157 +AI E+ + + K + R V R+VTPGTL +++ + P ++N+L+++ A Sbjct: 152 DFNKYVAISEEFANNVVGKAKSGGLQFDRKVARIVTPGTLIDEKFMDPYENNFLLSIYLA 211 Query: 158 RIRTE------------------WAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF 199 +R+E ++W+D+STG F + L S + RI REI+ Sbjct: 212 IVRSEDTEIVSPEQHSSISSSQPVGLSWLDLSTGDFFTQQTTAQMLPSALARISAREIVI 271 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS-------- 251 + A+ + + AV Q H I+ R + T+ +GS Sbjct: 272 DQN--VGAKIRQELQ----AAVGQDK---QHLITSFRCPS--EMRTLSEWGSIFESSIPP 320 Query: 252 -----FSQVEKTAAAAAISYIK-KTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT 305 F+ E A + Y++ +TQ V K + P R+ + ++ ID + LEIL T Sbjct: 321 EVASTFTAEETAACNILLEYVQVQTQGV-KMKLQAPRRKHLDESMSIDRNSLRGLEILET 379 Query: 306 L-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPI 364 G + SLL + + T +G RL +R+ SP IN RL+ ++ F+ + L + Sbjct: 380 ARDGLGKGSLLHAVRRTSTKSGARLLRDRLTSPSASLHVINERLNLVSKFLDDEDLRQNV 439 Query: 365 QKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN 411 +LK S D R + + +GRG+P D+ + I++ I ++ L+N Sbjct: 440 ILLLKRSFDAQRLVQKFSLGRGDPDDLICLSKSIQASQEIKSVLLRN 486 >gi|46126343|ref|XP_387725.1| hypothetical protein FG07549.1 [Gibberella zeae PH-1] Length = 1210 Score = 268 bits (684), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 237/863 (27%), Positives = 412/863 (47%), Gaps = 79/863 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P QY +IK D++VF++ G FYEL+ +DA + + +T R ++ M G Sbjct: 328 SPFETQYWKIKQNLWDTIVFFKKGKFYELYENDATVGHQEFDFKMTDR-----VNMRMVG 382 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL--EAKKRGNKS-----LVRRNVVRLVTPGT 138 VP + ++++ + I +++A +Q+E+ L E ++R +KS ++ R + ++T GT Sbjct: 383 VPESSLDYWVNQFIAKQYKVARVDQMETNLGKEMRERQDKSKKADKIITRELACILTAGT 442 Query: 139 LTEDQLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFKISTSNHD----RLISDIM 190 L + +L ++Y +A+ + + IA+ D +TG F +S+ D + + I Sbjct: 443 LVDGGMLQDDMASYCVAIKESVVDDLPAFGIAFADTATGRFYLSSFVDDVDLTKFETLIA 502 Query: 191 RIDPREIIFSEKELSHAEYKSLFETLGNVAVA---QPNVFF---DHSISESRIADYYNIT 244 + PRE++ + LS + L + +P F D + E A+Y+ Sbjct: 503 QTGPRELLIEKSHLSTKALRILKNNTSPTTIWTHLKPGTEFWDADTTRRELNTANYFKTD 562 Query: 245 TVD--TFGSFSQ------VEKTAAAAAISYIKKTQMVNKPTIGYPERE---DIQ--STLF 291 D + Q V +A A ISY++ + V P + E IQ TL Sbjct: 563 DADEEVWPEALQGLRDDDVIMSATGALISYLRFLK-VEGPLLSQGNFELYNPIQKNGTLI 621 Query: 292 IDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDS 350 +D NLE+ +++G E +L ++ +T G RLF +A PL + +IN RLD+ Sbjct: 622 LDGQTLINLEVFSNSVNGGSEGTLFSLLNKCVTPFGKRLFRSWVAHPLCNIDRINERLDA 681 Query: 351 INFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG---IRSGINILNL 407 + + + L PD+ R +SR+ G +P+D + +G I + +L Sbjct: 682 VEMLNADQTVREQFASQLVKMPDLERLISRIHAGACKPEDFVKVLEGFEQIEYTMGLLGS 741 Query: 408 FLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFL--RDGADASLDETR 465 + + G V++L L++ LS + RD L G + D++ Sbjct: 742 YKGGN------GLVDRLISSMPDLDEPLSYWRTAFDRNKARDEKILIPERGIEDDFDQSS 795 Query: 466 SLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIH 525 D+ K+ + L + +E K K LK H Y +E K ++ F Sbjct: 796 DRIDEIKQQLEDLLAEKKKEFKCKLLKFTHVGKEIYQLEAP--------KSVKVPSSFRQ 847 Query: 526 RQTMSNLTRFTTLELIDLENRITNA--TNSALLIELESFEILSNAIIEQSESLDNASQVI 583 ++ R+ +L L + A T+S L+ E+ S ++ L +A ++I Sbjct: 848 MSATKDVKRYYFPDLSQLVRELQEAEETHSQLVREVAS-RFFQKFDVDYDTWL-SAIKII 905 Query: 584 AIID--ISIALAILAKEQNYCRP-IIDNSTNFI-VKDGRHPIVEKTLKQQSSKPFIANDC 639 + +D +S+A A + Q CRP +D + + ++ RHP + + FI ND Sbjct: 906 SQLDCLVSLAKASASLGQPSCRPQFVDEERSTVDFQELRHPCMMHNVDD-----FIPNDI 960 Query: 640 DLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSR 699 L K+ LLTG N GKST LR + + VIMAQ+G YVPA++A + VD++ SR Sbjct: 961 KLG----GEQAKINLLTGANAAGKSTVLRMSCVAVIMAQIGCYVPATFARLTPVDRIMSR 1016 Query: 700 VGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLH 759 +G+ DN+ + +STF VE+ ET IL++AT +S VILDE+GRGT++ DG+++A A + ++ Sbjct: 1017 LGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVLHHVA 1076 Query: 760 ETNRCRGLLATHFHEL-TDLSKSLK-RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQ 817 C G ATH+H L T+ + R + V + + F++K+ G+A+ S+G+ Sbjct: 1077 THIGCVGYFATHYHSLATEFENHPEIRARRMQIHVDEDERRVTFMYKLEDGVAEGSFGMH 1136 Query: 818 VGKLAGLPNTVISRAYDILKTFE 840 + G+ + VI RA K +E Sbjct: 1137 CAAMCGISSRVIDRAEVAAKEWE 1159 >gi|67472182|ref|XP_651951.1| mutS family protein [Entamoeba histolytica HM-1:IMSS] gi|56468745|gb|EAL46564.1| mutS family protein [Entamoeba histolytica HM-1:IMSS] Length = 934 Score = 267 bits (683), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 247/871 (28%), Positives = 410/871 (47%), Gaps = 81/871 (9%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 L TP +QY IK N D ++F+ G FYEL+ +DA + ++ LG+ +T R ++ Sbjct: 66 LMKMTPFEKQYWNIKKDNYDVVIFFAKGKFYELYENDADIGNKELGLKITNR-----VNM 120 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRG---------NKSLVRRNVVR 132 M GVP + N Y KL+++G++I ++ E+ E+KKRG ++VRR + R Sbjct: 121 RMAGVPKASFNTYASKLLELGYKIGCVDEKETSEESKKRGATVIVNGKREPNIVRRELTR 180 Query: 133 LVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS----TSNHDRLISD 188 + T T TE +L S T + MA+ + + D+S G + T H+ L + Sbjct: 181 IYTVSTATEPELCSDTSDMFCMAIISNGCNVGVCYGDVSVGRIFLGYLEDTELHNSLHTL 240 Query: 189 IMRIDPREIIFSEK---ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNI-T 244 + R+ P+EI+ +++H F + V +P D + AD + Sbjct: 241 LHRVHPKEILLLNSISDDIAHICKNLKFAEI--TYVKEPE---DINGVLPLFADRGRVPK 295 Query: 245 TVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTI---GYPEREDI-QSTLFIDSAARSNL 300 V+ + + QV TA +Y T +V K TI + E + Q L +D+ + NL Sbjct: 296 VVEKYSTNDQV-MTAFTVLYNYFT-TLLVPKTTIINGTFGEYTTLSQDYLIVDAQSIVNL 353 Query: 301 EILRTLSGSREQSLLKTIDYSITGAGGRLFAER-IASPLTDSTKINTRLDSINFFIQNPI 359 + + E +LL +D T G R+ ER + PL D KI R + + FF++N Sbjct: 354 ALFASKGKEVEGTLLHFVDNCFTAFGKRMLRERFLLKPLMDVNKILHRQEVVEFFLENND 413 Query: 360 LINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEEL 417 LI+ I L+ PD+ R LS+ + + G + ++N + D+PE L Sbjct: 414 LIDQIGTFLRVIPDLERLLSQCTSSTITESNFIRMISGFETCQKLMNELKTIVKDMPEVL 473 Query: 418 RGAVEKLKKLPQ-SLEKTLSSMLS-DDLPTFKRDGGF-----LRDGADASLDETRSLRDQ 470 + V L +LE+ +S + S D + K + + D + + L ++ Sbjct: 474 QTIVLDKNNLGYPNLEEFISKLESIYDFTSAKEEHAITFFNGYNEEIDHAFERRNELENE 533 Query: 471 SKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMS 530 + + S++ + E K + I +++L S LKK H + S Sbjct: 534 FAKELVSIKKIFGEA---KYVNIGGDDHL--IALPIKQYESYLKK---------HAKLPS 579 Query: 531 NLTRFTTLELIDLENRITNATNSALLIELE--------SFEILSNAIIEQSES---LDNA 579 +T I E R+ ++ S++ E + S L N +I + S L A Sbjct: 580 G---YTEANKIKSEARLMSSKVSSIQTEYDLNEKQINDSHHTLFNQLINEVSSTLVLPRA 636 Query: 580 SQVIAIIDISIALAILAKE-QNYCRP-IIDNSTNFIVKDGRHPIVEKTL---KQQSSKPF 634 I +ID +++A ++ + C P I N + + P T +Q P+ Sbjct: 637 ITNIGLIDCFVSMARCSQSMETSCLPSFIKNGMIYSYRKDPEPTSITTPYFNAKQLKHPY 696 Query: 635 IANDCDLSC-PNDKNSG----KLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAH 689 + S P++ G + +LTGPNMGGKST LR L VIMAQMG Sbjct: 697 LTVSTKTSAIPSNIILGGTDPQTIILTGPNMGGKSTLLRTVCLAVIMAQMGMRCTGEEIT 756 Query: 690 IGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLS 749 + +VD +F+R+G++D++ G STFMVE+ ETA +L+ AT S V+LDE+GRGT+T DGL+ Sbjct: 757 MSVVDHIFTRIGASDDILHGMSTFMVELDETAQMLHDATQNSLVVLDELGRGTSTHDGLA 816 Query: 750 IAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGI 809 IA A +EY + +++TH+H+L + + + + + N IIFL+ ++ G Sbjct: 817 IAHAVVEYTVSKIKPLMIVSTHYHQLCEEFEERGDVKLSHMGCTIQNNQIIFLYTLLDGA 876 Query: 810 ADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 SYG++V ++AGLP ++ RA +I FE Sbjct: 877 CPKSYGMKVAEMAGLPTKIVHRAENIATWFE 907 >gi|21951852|gb|AAM82372.1| mismatch repair protein MutS [Escherichia coli] gi|21951854|gb|AAM82373.1| mismatch repair protein MutS [Escherichia coli] Length = 376 Score = 267 bits (683), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 140/343 (40%), Positives = 208/343 (60%), Gaps = 15/343 (4%) Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + AL +E Sbjct: 6 GYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEK 59 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 + +E L + ++ E+L ++ +A +D+ + LA A NY P + + +GRH Sbjct: 60 QLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFIDKPGIRITEGRH 119 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE+ L + PFIAN +LS ++ ++TGPNMGGKST++RQ ALI +MA + Sbjct: 120 PVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTALIALMAYI 170 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V++DEIG Sbjct: 171 GSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIG 230 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + + I Sbjct: 231 RGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALEHGDTI 290 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 291 AFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 333 >gi|315051840|ref|XP_003175294.1| DNA mismatch repair protein msh6 [Arthroderma gypseum CBS 118893] gi|311340609|gb|EFQ99811.1| DNA mismatch repair protein msh6 [Arthroderma gypseum CBS 118893] Length = 1211 Score = 267 bits (683), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 237/873 (27%), Positives = 404/873 (46%), Gaps = 92/873 (10%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P +QY EIK D++VF++ G FYEL+ +DA + + + LT R ++ M G Sbjct: 317 SPFEKQYWEIKQKFWDTIVFFKKGKFYELYENDATIGHQLFDLKLTDR-----VNMRMVG 371 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL-----EAKKRGNKS-------LVRRNVVRL 133 VP + +H+ + + G +IA +Q ES L E + +GNK +++R + + Sbjct: 372 VPEMSLDHWANQFVAKGFKIARVDQSESALSKEMREREDKGNKGKAQKEDKVIKRELACV 431 Query: 134 VTPGTLTEDQLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFKISTSNHD----RL 185 +T GTL E ++ S Y +A+ + + I+++D +TG F +S D R Sbjct: 432 LTTGTLVEGSMIQGDMSTYCVAIKESIIDGLPAFGISFVDTATGQFFLSQFVDDVDMTRF 491 Query: 186 ISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA---QPNVFF---DHSISESRIAD 239 + + + P+E++ + +S + L G + +P F D ++ E D Sbjct: 492 ETFVAQTRPQELLLEKSVMSTKALRILKNNTGPTTLWNYLKPGKEFWEADVTVRELDAGD 551 Query: 240 YYNITTVDTFGSFSQVEK---------TAAAAAISYIKKTQMVNK-PTIG-YPEREDIQ- 287 Y+ + QV + +A A + Y++ ++ TIG + + I+ Sbjct: 552 YFVSGEGSYVSGWPQVLQDARDKDLVMSALGALLQYLEMLKIGRDLITIGNFTWYDPIKK 611 Query: 288 -STLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKIN 345 S+L +D NLEI T GS E +L + ++ +T G RLF + + PL D+TKIN Sbjct: 612 ASSLVLDGQTLINLEIFANTYDGSSEGTLFQLLNRCVTPFGKRLFKQWVCHPLMDTTKIN 671 Query: 346 TRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINIL 405 RLD++ + + L PD+ R +SR+ G + +D + +G + Sbjct: 672 ARLDAVESLNADSTVREQFSSQLTKMPDLERLISRVHAGTCKAQDFVRVLEGFEQIEYTM 731 Query: 406 NLFLKND----LPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFL--RDGADA 459 L + L +L A+ L L + E D P R+ L +G + Sbjct: 732 GLLKEAGSGYGLIGQLISAMPNLNGLLKFWETAF------DRPK-ARESDILVPEEGIEE 784 Query: 460 SLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLES 519 D +R +Q + + + + +E K + K N Y +EV ++ K Sbjct: 785 EFDASRKGIEQLEDDLEQVLHRTRKELKCSTIVFKDNGKEIYQLEVPIKIKNIPKS---- 840 Query: 520 KDRFIHRQTMSNLTRFTTLELIDLENRITNATNS-ALLIELESFEILSNAIIEQSESLDN 578 + + R+ EL L ++ A + A +++ + + + S L Sbjct: 841 ---WDQMSATKQVKRYYFPELRALIRKLQEARETHAQIVKGVAGRFYARFDKDYSSWL-A 896 Query: 579 ASQVIAIIDISIALAILAKEQNY--CRPII--DNSTNFIVKDGRHPIVEKTLKQQSSKPF 634 A ++IA +D I LA + + CRPI D + ++ RHP + + F Sbjct: 897 AVKIIAQLDCLIGLAKASTALGHPSCRPIFVDDERSVLDFQELRHPCMMPNIGD-----F 951 Query: 635 IANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVD 694 I ND L +S + LLTG N GKST LR VIMAQ+G YVP YA + VD Sbjct: 952 IPNDVKLG----GDSSNINLLTGANAAGKSTVLRMTCTAVIMAQIGCYVPCEYARLTPVD 1007 Query: 695 KLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWAT 754 ++ SR+G+ DN+ + +STF VE+ ET IL++AT +S VILDE+GRGT++ DG+++A A Sbjct: 1008 RIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAV 1067 Query: 755 IEYLHETNRCRGLLATHFHELT-------DLSKSLKRFHNATLQVSDSNEGIIFLHKVIP 807 + ++ G ATH+H L +++ R H V D+ + FL+K+ Sbjct: 1068 LHHVATHIGALGFFATHYHSLAAEFEGHPEIAARRMRIH-----VDDAERRVTFLYKLED 1122 Query: 808 GIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 G+A+ S+G+ + G+P+ V+ A K +E Sbjct: 1123 GVAEGSFGMHCASMCGIPSKVVEGAEIAAKQWE 1155 >gi|21951842|gb|AAM82367.1| mismatch repair protein MutS [Salmonella enterica] Length = 376 Score = 267 bits (682), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 139/348 (39%), Positives = 210/348 (60%), Gaps = 15/348 (4%) Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + A Sbjct: 1 YNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPELKEYEDKVLTSKGKA 54 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L +E + ++ L + ++ Q L ++ +A +D+ + LA A NY P+ + + Sbjct: 55 LALEKQLYDELFDLLLPQLADLQQSANALAELDVLVNLAERAYTLNYTCPVFTDKPGIRI 114 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 115 TEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTALIA 165 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V+ Sbjct: 166 LLAYIGSYVPAQSVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVL 225 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 226 MDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALE 285 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 286 HGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 333 >gi|226328642|ref|ZP_03804160.1| hypothetical protein PROPEN_02537 [Proteus penneri ATCC 35198] gi|225203375|gb|EEG85729.1| hypothetical protein PROPEN_02537 [Proteus penneri ATCC 35198] Length = 499 Score = 267 bits (682), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 162/520 (31%), Positives = 278/520 (53%), Gaps = 38/520 (7%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 ++L S TPMM+QY++IK+ +P+ L+FYRMGDFYELFFDDA ASR L I+LTKRG+ G+ Sbjct: 5 QHLDSHTPMMQQYLKIKAEHPEILLFYRMGDFYELFFDDAKKASRLLDISLTKRGQSAGQ 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM GVP H +Y+ KL+++G +AICEQI P + K V R V+R+VTPGT+ Sbjct: 65 PIPMAGVPHHAVENYLAKLVQLGESVAICEQIGDPATS-----KGPVERKVIRIVTPGTV 119 Query: 140 TEDQLLSPTDSNYLMAVARIRT-EWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREI 197 T++ LL N L A+ + + + A +DI++G F ++ + + +++++ R P E+ Sbjct: 120 TDEALLEERQDNLLAAIWQDKNGAFGYATLDITSGRFCVTEMPDSESMLAELQRTHPAEL 179 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQ-----PNVFFDHSISESRIADYYNITTVDTFG-S 251 ++ E FE++ + Q P F+ + ++ + + FG Sbjct: 180 LYPET----------FESMALIERQQGLRRRPIWEFELETARQQLNLQFGTRDLTGFGVE 229 Query: 252 FSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 + + AA + Y+K TQ P I E Q ++ +D+A R NLE+ + L+G + Sbjct: 230 NAYLALCAAGCLLQYVKDTQRTALPHIRSITMERPQDSIILDAATRRNLELTQNLAGGTD 289 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 +L +D +T G R+ I +PL ++ R D+I+ P+ +Q L+ Sbjct: 290 NTLASVLDLCVTPMGSRMLKRWIHTPLRQREQLVKRQDAISAL--QPLYFE-LQPFLRQV 346 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQ 429 D+ R L+RL + P+D++ +R + +I + + D+P +EL+ + + +L + Sbjct: 347 GDLERVLARLALRSARPRDLSRMRHAFQQYYDIHQVLEQTDMPYIKELQKRISQFDELCE 406 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 LE + + P RDGG + G +A LDE R+L D + + L+++ E+ I Sbjct: 407 LLENA----IVETPPVLVRDGGVIASGYNAELDEWRALADGASDYLDKLEIREREKWGID 462 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTM 529 LK+ N GY+I+V+ ++++ ++ RQT+ Sbjct: 463 TLKVGFNGVHGYYIQVSRGQSNLVPM------HYVRRQTL 496 >gi|154275572|ref|XP_001538637.1| hypothetical protein HCAG_06242 [Ajellomyces capsulatus NAm1] gi|150415077|gb|EDN10439.1| hypothetical protein HCAG_06242 [Ajellomyces capsulatus NAm1] Length = 1188 Score = 267 bits (682), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 236/871 (27%), Positives = 396/871 (45%), Gaps = 89/871 (10%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P +QY EIK D++VF++ G FYEL+ +DA + + + LT R ++ M G Sbjct: 335 SPFEKQYWEIKQKFWDTIVFFKKGKFYELYENDATIGHQLFDLKLTDR-----VNMRMVG 389 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL--EAKKRGNKS---------LVRRNVVRLV 134 VP + +H+ + + G +IA +Q ES L E +++ +KS ++RR + ++ Sbjct: 390 VPEMSLDHWANQFVAKGFKIARVDQSESALGKEMREKQDKSNGTPVKQDKIIRRELSCVL 449 Query: 135 TPGTLTEDQLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFK----ISTSNHDRLI 186 T GTL + +L S Y +A+ + IA++D +TG F I ++ + Sbjct: 450 TSGTLVDGSMLQDDMSTYCVAIKEALVNDLPAFGIAFVDTATGQFYLAEFIDDADMTKFE 509 Query: 187 SDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA---QPNVFF---DHSISESRIADY 240 + + + P+E++ + +S + L G + +P F D ++ E ++Y Sbjct: 510 TFVAQTRPQELLLEKSVMSTKALRILKNNTGPTTLWNYLKPCKEFCEADVTVRELDASNY 569 Query: 241 YNITTVDTFGSFSQVEK---------TAAAAAISYIKKTQMVNK-PTIG-YPEREDIQ-- 287 + D ++ + + +A A + Y++ ++ TIG + + I+ Sbjct: 570 FVSEEGDNIAAWPEALRQARDKEFVMSAFGALVQYLRMLKIERDLITIGNFTWYDPIKKA 629 Query: 288 STLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINT 346 ++L +D NLEI + G +E +L ++ IT G RLF + + PL D+ KIN Sbjct: 630 TSLVLDGQTLINLEIFANSFDGGQEGTLFHLLNRCITPFGKRLFKQWVCHPLMDTRKINA 689 Query: 347 RLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILN 406 RLD+++ + + N L PD+ R +SR+ GR + +D + +G + Sbjct: 690 RLDAVDALNADSSVQNQFSSQLTKMPDLERLISRVHAGRCKAQDFLHVLEGFEKIDYTMG 749 Query: 407 LFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGA------DAS 460 L + E GA+ +L L L + T +D G L A DAS Sbjct: 750 LLKEIGSGE---GAIGQLVASMPDLSGYLQYWKTAFDRTKAKDSGILVPEAGVEEDFDAS 806 Query: 461 LDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESK 520 D + +++ ++ K + + N Y +EV +V K Sbjct: 807 HDRISEIESDLDQLLKEVRKKLGSNAIV----YRDNGKEIYQLEVPIKIKNVPKD----- 857 Query: 521 DRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNAS 580 + RF EL L ++ A + I E E + A Sbjct: 858 --WDQMSATKQAKRFYFPELRSLIRQLQEAQETHSQIVKEVASRFYARFDENYSTWLAAV 915 Query: 581 QVIAIIDISIALAILAKEQNY--CRPII--DNSTNFIVKDGRHPIVEKTLKQQSSKPFIA 636 + IA +D I+LA + Y CRP+ D + ++ RHP + + FI Sbjct: 916 RTIAQLDCLISLAKASSALGYPSCRPVFVDDERSVLEFEELRHPCMLPNVGD-----FIP 970 Query: 637 NDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKL 696 ND L N+ L LLTG N GKST LR VIMAQ+G YVP A + VD++ Sbjct: 971 NDVKLG----GNTPNLNLLTGANAAGKSTILRMTCTAVIMAQIGCYVPCQSARLTPVDRI 1026 Query: 697 FSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIE 756 SR+G+ DN+ + +STF VE+ ET IL +AT +S VILDE+GRGT++ DG+++A A + Sbjct: 1027 MSRLGANDNIFASQSTFFVELSETKKILFEATPRSLVILDELGRGTSSYDGVAVAQAVLH 1086 Query: 757 YLHETNRCRGLLATHFHELT-------DLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGI 809 ++ G ATH+H L +++ R H V + + FL+K+ GI Sbjct: 1087 HVATHIGALGFFATHYHSLASEFEGHPEIAPRRMRIH-----VDEEERRVTFLYKLEEGI 1141 Query: 810 ADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 A+ S+G+ + G+PN V+ RA K +E Sbjct: 1142 AEGSFGMHCASMCGIPNKVVERAEIAAKQWE 1172 >gi|224128348|ref|XP_002320307.1| predicted protein [Populus trichocarpa] gi|222861080|gb|EEE98622.1| predicted protein [Populus trichocarpa] Length = 1288 Score = 266 bits (681), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 251/953 (26%), Positives = 430/953 (45%), Gaps = 148/953 (15%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E KS T RQ+ E KS + D ++F++MG FYELF DA + ++ L + +++ Sbjct: 307 EFAKSLTGGQRQWWEFKSKHMDKVLFFKMGKFYELFEMDAHVGAKELDL------QYMKG 360 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESP----LEAKKRGNK-SLVRRNVVRLV 134 + P CG P + ++KL + G+R+ + EQ E+P L K++G+K +V+R + ++ Sbjct: 361 EQPHCGFPEKNFSLNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVI 420 Query: 135 TPGTLTEDQLLSPT-DSNYLMAVARIRTEWA---------IAWIDISTGIFKISTSNHDR 184 T GTLTE + LS D++YLMA+ R A + +D++T + D Sbjct: 421 TKGTLTEGEFLSANPDASYLMALTESRQSLANQGLERIFGVCVVDVTTSRIILGQFGDDA 480 Query: 185 LISDIM----RIDPREII-------------------------------FSEKELSHAEY 209 S + + P EI+ F + E + E Sbjct: 481 ECSSLCCLLSELRPVEIVKPAKMLSSETERVMVRHTRNPLVNELAPLSEFWDAERTVQEV 540 Query: 210 KSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTF------GSFSQVEKTAAAAA 263 K++++ +G+++ + P D + + +Y G + +A + Sbjct: 541 KTIYKHIGDLSASGPLNKTDLDTTNLNVGEYRPSCLPSILLEFVNKGENGSLALSALGGS 600 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLF----------IDSAARSNLEILR-TLSGSREQ 312 + Y+K+ +++ + + + E + + F +D+AA NLEI + +G Sbjct: 601 LYYLKQA-FLDETLLRFAKFESLPCSDFCEVAKKPYMILDAAALENLEIFENSRNGDTSG 659 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFF--IQNPILINPIQKILKS 370 +L +++ +T G RL +A PL I R D++ + P+++ QK+L Sbjct: 660 TLYAQLNHCVTAFGKRLLKTWLARPLYHLESIKDRQDAVAGLRGVNQPMMLE-FQKVLSG 718 Query: 371 SPDVPRSLSRL-----KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLK 425 PD+ R L+R+ GR K + + D + + L+ E + A L Sbjct: 719 LPDIERLLARIFSTSEANGRNANK-VVLYEDAAKKQLQEFISALRG--CELVAQACSSLA 775 Query: 426 KLPQSLEK-------TLSSMLSDDLPTFKR-----------DGGFL--RDGADASLDETR 465 + +++E T L D LP K + G + +G D D Sbjct: 776 VILENVESGRLHHLLTPGKGLPDILPILKHFKSAFDWVEANNSGRIIPHEGVDVEYD--- 832 Query: 466 SLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVLKKDLE---- 518 S ++ K + +SL E+ K+ K++ Y +EV + +D E Sbjct: 833 SACEKVKEVESSLARHLKEQQKLLGDKSITYVTVGKEAYLLEVPEHLRGSIPQDYELRSS 892 Query: 519 ------SKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF--EILSNAII 570 S I R+ T + ++ A + E ES IL I+ Sbjct: 893 KKIGSVSASMPIKAGRFQGFYRYWTPSIKKFLGELSQAES-----EKESALKSILQRLIV 947 Query: 571 EQSESLDNASQVI---AIIDISIALAILAK--EQNYCRPIIDNST------NFIVKDGRH 619 + D Q++ A +D+ I+LAI + E C P I S+ K H Sbjct: 948 CFCKYHDKWRQLVSATAELDVLISLAIASDFYEGPACCPTIVGSSLSSQVPCLSAKKLGH 1007 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P++ + + F+ ND + + LLTGPNMGGKST LRQ L VI+AQ+ Sbjct: 1008 PVLRSDSLGKGA--FVPNDISI---GGSGRARFILLTGPNMGGKSTLLRQVCLAVILAQI 1062 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 G+ VPA + VD++F R+G+ D++ +G+STF+ E+ ETA +L+ AT S V LDE+G Sbjct: 1063 GADVPAESFELSPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATCNSLVALDELG 1122 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELT-DLSKSLK-RFHNATLQVSD--S 795 RGT+T DG +IA + +E+ +CRG+ +TH+H L D K K ++ + QV + Sbjct: 1123 RGTSTSDGQAIAESVLEHFVHKVQCRGMFSTHYHRLAVDYQKDSKVSLYHMSCQVGNGVG 1182 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 E + FL+++ PG SYG+ V +LAGLP++++ A + FE +Y ++K Sbjct: 1183 VEEVTFLYRLRPGACPKSYGVNVARLAGLPDSILHNAAAKSREFEAVYGRHRK 1235 >gi|296415011|ref|XP_002837187.1| hypothetical protein [Tuber melanosporum Mel28] gi|295633044|emb|CAZ81378.1| unnamed protein product [Tuber melanosporum] Length = 871 Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 131/272 (48%), Positives = 184/272 (67%), Gaps = 6/272 (2%) Query: 569 IIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQ 628 II+ +L + V+ IDI+ + A LA+EQN+ RP+++ + + GRHP VE L+ Sbjct: 602 IIKSLSTLRKNASVLDRIDIACSFATLAREQNHVRPLLNLGVSHKIVGGRHPTVETGLQS 661 Query: 629 QSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYA 688 Q + F N+C + + +LW++TGPNM GKSTFLRQNALI I+AQ+GS+VPA A Sbjct: 662 QG-RTFTPNNCFVG-----DRERLWVITGPNMAGKSTFLRQNALISILAQVGSFVPAEVA 715 Query: 689 HIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGL 748 IGIVD++FSRVGSADNL +STFMVEM+ETA IL AT +SFVI+DE+GRGT DGL Sbjct: 716 EIGIVDRIFSRVGSADNLFKDQSTFMVEMLETAEILRSATPRSFVIMDEVGRGTTPKDGL 775 Query: 749 SIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPG 808 ++A+A + +L+ N+CR L ATHFH+LTDL+K K + + E F H+V PG Sbjct: 776 AVAYACLHHLYRQNQCRVLFATHFHDLTDLAKPFKGVGCYCTDIMEDGESFAFDHRVRPG 835 Query: 809 IADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + +S+ ++V +LAG+P+ VI A + LK + Sbjct: 836 VNRNSHALKVARLAGIPDGVIEIAEETLKKLD 867 Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 100/363 (27%), Positives = 170/363 (46%), Gaps = 17/363 (4%) Query: 40 PDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLI 99 P ++ R+G FYE++F+ A LG+ + ++ G + M G P + +++ L+ Sbjct: 5 PHCVLLTRVGGFYEMYFEAAEEYGPLLGLKVAQKRTSAGS-VSMAGFPFSALDRFLKVLV 63 Query: 100 K-IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAV-- 156 + G +A+ E+ +P +K G L R + R+VTPGTL ++ + +S+YL+A+ Sbjct: 64 QDHGKFVAVSEEYPNP---EKGG--LLFDRRITRVVTPGTLIDENFMELGESHYLLALTA 118 Query: 157 ---ARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLF 213 E +AW+D+STG F + + +D+ RI P+E++ E S A L Sbjct: 119 GSGVESDREVGLAWLDLSTGDFFTQETTVGDVRADVARIGPKEVVLLGSEYSGARESGLE 178 Query: 214 ETLGNVAVAQPNVFFDHSISESRIADYYNITTV----DTFGSFSQVEKTAAAAAISYIKK 269 E L D + + D+ ++ T +E A + Y + Sbjct: 179 EALRREQYFITIHSVDMRVMLREVKDWKDMIETRISKTTIMEMRDIEVQAGNILLDYTQT 238 Query: 270 TQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT-LSGSREQSLLKTIDYSITGAGGR 328 + P R+ + + IDSA LEI++T G R+ +LL I ++T +G R Sbjct: 239 RLPGMAMRLQPPVRKTMTDAMIIDSATMRGLEIIQTSRDGLRKGALLSIIKQTMTQSGSR 298 Query: 329 LFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEP 388 L + I SP+T T I RL+ + F + L IQ +LK + D R L R+ + RG Sbjct: 299 LLSNWIKSPITSITAIEHRLNLVETFKNDTHLRQDIQGLLKRTHDSQRLLQRMSLARGGA 358 Query: 389 KDI 391 KD+ Sbjct: 359 KDL 361 >gi|310796497|gb|EFQ31958.1| MutS domain V [Glomerella graminicola M1.001] Length = 1229 Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 229/863 (26%), Positives = 404/863 (46%), Gaps = 76/863 (8%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P +QY EIK D++VF++ G FYEL+ +DA + + + LT R ++ M G Sbjct: 344 SPFEKQYWEIKQKLWDTVVFFKKGKFYELYENDATIGHQLFDLKLTDR-----VNMRMVG 398 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL--EAKKRGNKS--------LVRRNVVRLVT 135 VP + + ++ + + G+++A +Q+ES L E ++R + S ++RR + ++T Sbjct: 399 VPESSLDMWVNQFVAKGYKVARVDQMESALGKEMRERDDASAKNKKVDKIIRRELACILT 458 Query: 136 PGTLTEDQLLSPTDSNYLMAVARI----RTEWAIAWIDISTGIFKISTSNHD----RLIS 187 GTL + +L + Y ++ + + I ++D +TG F IS D + + Sbjct: 459 GGTLVDGSMLQDDLATYCASIKESIIDDKPAFGITFVDCATGQFFISEFEDDVDLTKFET 518 Query: 188 DIMRIDPREIIFSEKELSHAEYKSLFETLGNVAV----AQPNVFFDHSISESRI--ADYY 241 + +I PRE+I + +S + L + + + F+D + + DY+ Sbjct: 519 FVAQISPRELILEKSRISTKALRILKNNTSPMTIWNYLKSSSEFWDADTTRRELDSGDYF 578 Query: 242 ------NITTVDTFGSFSQVE--KTAAAAAISYIK----KTQMVNKPTIGYPEREDIQST 289 + T +T + +A + + Y++ + ++++ + T Sbjct: 579 ATEDGRDETWPETLAQARDKDLLMSAFGSLVQYLRVLKLEGDLLSQGNFEWYTPIQRNGT 638 Query: 290 LFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRL 348 L +D NLE+ T++G E +L ++ +T G RLF + + PL D KIN RL Sbjct: 639 LILDGQTLINLEVFSNTVNGGPEGTLFTLLNRCVTPFGKRLFRQWVCHPLCDIKKINERL 698 Query: 349 DSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG---IRSGINIL 405 D+++ + + + PD+ R +SR+ +P+D + +G I + +L Sbjct: 699 DAVDMLNSDRGVREQFTSQMTKMPDLERLISRIHAASCKPEDFVRVLEGFEQIEYTMGLL 758 Query: 406 NLFLK-NDLPEELRGAVEKLKKLPQSLEKT-LSSMLSDDLPTFKRDGGFLRDGADASLDE 463 F N L + L ++ L + P S KT + D F + +D D S D Sbjct: 759 GSFGGGNGLVDRLLASMPNLSE-PLSYWKTAFDRKKARDERIFIPERSIEQD-FDNSQDR 816 Query: 464 TRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRF 523 ++ + + ++ Q E K K LK Y IE K ++ + Sbjct: 817 IEDIKQELQELLGKKQ----SELKCKKLKFTDIGKEIYQIEAP--------KAVKVPSNW 864 Query: 524 IHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVI 583 S++ R+ EL +L ++ A + I E E E+ + ++I Sbjct: 865 RQMSATSSVKRYYFEELTELVRQLQEAEETHSQIVKEVAERFFRRFDADYETWSQSIRII 924 Query: 584 AIID--ISIALAILAKEQNYCRP-IIDNSTNFI-VKDGRHPIVEKTLKQQSSKPFIANDC 639 + +D IS+A A + + CRP ID + + ++ RHP + + FI ND Sbjct: 925 SQLDCLISLAKASSSLGEPSCRPQFIDQERSVVEFEELRHPCMLNAVAD-----FIPNDI 979 Query: 640 DLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSR 699 L S K+ LLTG N GKST LR + + VIMAQ+G YVPA+ A + VD++ SR Sbjct: 980 QLG----GGSAKINLLTGANAAGKSTVLRMSCIAVIMAQIGCYVPATSALLTPVDRIMSR 1035 Query: 700 VGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLH 759 +G+ DN+ + +STF VE+ ET IL++AT +S VILDE+GRGT++ DG+++A A + ++ Sbjct: 1036 LGANDNIFASQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVLHHVA 1095 Query: 760 ETNRCRGLLATHFHELTDLSKSLKRFHNATLQ--VSDSNEGIIFLHKVIPGIADHSYGIQ 817 C G ATH+H L ++ +Q V + + FL+K+ G+A S+G+ Sbjct: 1096 THVGCVGFFATHYHSLAAEFENHPEIRPRRMQIHVDEEQRRVTFLYKLEDGVAQGSFGMH 1155 Query: 818 VGKLAGLPNTVISRAYDILKTFE 840 + G+ VI RA + +E Sbjct: 1156 CAAMCGISGRVIERAEVAAREWE 1178 >gi|328766455|gb|EGF76509.1| hypothetical protein BATDEDRAFT_21067 [Batrachochytrium dendrobatidis JAM81] Length = 923 Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 270/963 (28%), Positives = 440/963 (45%), Gaps = 126/963 (13%) Query: 1 MTKEFSSPQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYR-MGDFYELFFDDA 59 MTK+FS P D+ + S T R + + +F R GD+Y + DA Sbjct: 1 MTKDFSQP--------DMALDKSSETSFCRFFESLVQTQGTLRLFERNGGDYYSVHGIDA 52 Query: 60 LLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLI-KIGHRIAICEQIESPLEAK 118 + S + T T K LG + C + A ++++L+ + +RI +I P K Sbjct: 53 VFVSEHVYRTATVL-KQLGSGLQSCTLSKLNAMSFLKELLTEKQYRI----EIWCPDSGK 107 Query: 119 KRGNKSLVRRNVVRLVTPGTL--TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFK 176 K + + +PG L ED L TD V + + + G Sbjct: 108 NNSWK------ISKQASPGNLQSVEDMLFVNTDVGSAPVVLAVTVTVKGSDKIVGVGYTD 161 Query: 177 ISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPN----------- 225 +T + R+ E + +E + ++S+ LG V P+ Sbjct: 162 ATT---------MRRLGICEFVDNE---TFTNFESIMIQLGVKEVVMPDDSQNYDLKKIK 209 Query: 226 ---VFFDHSISESRIADYYNITTV----------DTFGS-FSQVEKTAA----AAAISYI 267 + D I+E R +++ NI + D F S ++E T A AA I Y+ Sbjct: 210 AIVLRCDAIITERRKSEF-NIQNIQQDLSRLLESDIFVSALPEMELTTAMRCIAALIHYL 268 Query: 268 ---KKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSIT 323 K TI E+ D+ + +D+AA L ++ SG + S+ +D T Sbjct: 269 DLLADESNFGKYTI---EQHDLSQYMRLDAAAVKALNLVPNGQSGPKSASIFGLLDQCKT 325 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQ-KILKSSPDVPRSLSRLK 382 G RL + I PL + + I R + + F + L +Q + LK+ PD+ R + + Sbjct: 326 AQGSRLLGQWIKQPLMNISDIVNRQNLVQVFFDDSQLRQALQDERLKTFPDLHRLARKFQ 385 Query: 383 IGRGEPKDIAVIRD---GIRSGINILNLFLKN--DLPEE-----LRGAVEKLKKLPQSLE 432 G +D+ + G+ + + L + DL E + E L KL + +E Sbjct: 386 RGSASLQDVVRVYQVVLGLPAMVETLEDYSGKYMDLFSETFTLKFKEYSESLCKLQELVE 445 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---K 489 T+ DL + ++ L ETRS D I S + A + I K Sbjct: 446 TTI------DLAAVENHQYLIKPDFHRELLETRSSMDNVLNTIQSEAEQVAIDLGIEFEK 499 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LK + N+ GY + ++ A+ ++ + + +I T FTT+ L L N Sbjct: 500 RLKFEKNSQYGYHLRLSRVDANRIRGNRD----YIELSTQKAGVLFTTVNLRTLSNNFAE 555 Query: 550 ATNSALLIELESFEILSNAIIEQSES----LDNASQVIAIIDISIALAILA--KEQNYCR 603 T + L++ + LS +I + S L+ +Q++A ID+ ++ A +A Y R Sbjct: 556 LTKAYELLQ----QNLSKDVISITGSYFPVLELLNQLVAHIDVLVSFADVAISAPMQYVR 611 Query: 604 P--IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 P ++ + I+K RHP VE Q FI ND DL +N ++TGPNMG Sbjct: 612 PNILLSGQGDIILKKARHPCVEV----QDDVSFIENDVDLV----RNDSVFQIITGPNMG 663 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKST++RQ +IV+MAQ+GS+VP A + IVD + +RVG+ D+ G STFM EM+ETA Sbjct: 664 GKSTYIRQIGVIVLMAQIGSFVPCEEASVSIVDSILARVGANDSQLKGISTFMAEMLETA 723 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS 781 SIL AT+ S +I+DE+GRGT+T DG +AWA E++ + C L ATHFHEL++L+ Sbjct: 724 SILRAATSNSLIIIDELGRGTSTYDGFGLAWAIAEHIAKHIGCFTLFATHFHELSNLADQ 783 Query: 782 ---LKRFHNATL--QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 +K H + L +S + + L+KV+PG+ D S+GI V +LA P++V+ A Sbjct: 784 VPFVKNLHVSALLSTLSSGPKSLTLLYKVMPGVCDQSFGIHVAELAAFPDSVVKIAKRKA 843 Query: 837 KTFEKLYHHNQKDMRLYYPEIQTKESKNNLSK---NDKLFVEKIKCLNLDEMSPLTALKT 893 E HH+++ R++ + +S + L++ ++ + K N+D + TA++T Sbjct: 844 AELEDFSHHDEQPKRVWNSSDEAIQSGSELAQQFLSEASILAKKHGSNMDMIH--TAMQT 901 Query: 894 LYA 896 L A Sbjct: 902 LGA 904 >gi|213584078|ref|ZP_03365904.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 358 Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 141/371 (38%), Positives = 217/371 (58%), Gaps = 15/371 (4%) Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 L + D P RDGG + G LDE R+L D + + L+++ E T + LK+ Sbjct: 3 LERAIIDAPPVLVRDGGVIAPGYHEELDEWRALADGATDYLDRLEIRERERTGLDTLKVG 62 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + A Sbjct: 63 YNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPELKEYEDKVLTSKGKA 116 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L +E + ++ L + ++ L ++ +A +D+ + LA A NY P + + Sbjct: 117 LALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLAERAWTLNYTCPTFTDKPGIRI 176 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 177 TEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTALIA 227 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V+ Sbjct: 228 LLAYIGSYVPAQNVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVL 287 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 288 MDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALE 347 Query: 795 SNEGIIFLHKV 805 + I F+H V Sbjct: 348 HGDTIAFMHSV 358 >gi|320593113|gb|EFX05522.1| DNA mismatch repair protein [Grosmannia clavigera kw1407] Length = 1190 Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 236/865 (27%), Positives = 406/865 (46%), Gaps = 81/865 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P +QY EIK D++VF++ G F+EL+ +DA + + + LT R ++ M G Sbjct: 303 SPFEKQYWEIKQKLWDTIVFFKKGKFFELYENDATIGHQLFDLKLTDR-----VNMRMVG 357 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL--EAKKRGNKS-------LVRRNVVRLVTP 136 VP + + ++ + + G+++A +Q+ES L E ++RG + ++RR + ++T Sbjct: 358 VPESSLDMWVNQFVAKGYKVARVDQMESALGKEMRERGASAVKSKQDKIIRRELACVLTR 417 Query: 137 GTLTEDQLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFKISTSNHDRLISD---- 188 GTL E +L + + A+ + + + IA++D +TG F S D ++ Sbjct: 418 GTLVEGSMLQDDMATFCAAIKQDVVDGKPVFGIAFVDAATGQFFFSEFEDDAELTKFETF 477 Query: 189 IMRIDPREIIFSEKELSHAEYKSLFETLGNVAV----AQPNVFFDHSISESRIADYYNIT 244 + ++ P+E+I + +S + L + + + F+D + R D Sbjct: 478 VAQMAPQELILEKNCISTKALRILKNNTTPMTIWNYRKSGSEFWDADTTR-RELDCGGYF 536 Query: 245 TVDTFGSFSQVEK-----------TAAAAAISYIK----KTQMVNKPTIGYPEREDIQST 289 T D G+ +K +A A ++Y++ + +V++ T Sbjct: 537 TADDGGNEDWPKKLAEVREKPFLMSAFGALVNYLRDLKLERNLVSQANFEMYNPIHRNGT 596 Query: 290 LFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRL 348 L +D NLEI T++G E +L ++ IT G RLF + + PL D KIN RL Sbjct: 597 LILDGQTLINLEIFSNTVNGGPEGTLFNLLNRCITPFGKRLFRKWLCHPLCDIRKINERL 656 Query: 349 DSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG---IRSGINIL 405 D+++ + L + + PD+ R SR+ G + +D + +G I + +L Sbjct: 657 DAVDMLNADRSLRDQFSSEMCKMPDLERLASRIHAGSCKAEDFVRVLEGFEQIEYTMGLL 716 Query: 406 NLF-LKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRD-GADASLDE 463 + N L + L A+ L + P S KT + D + D + + G D DE Sbjct: 717 RVLNGGNGLVDRLLAAMPDLNE-PLSYWKT-----AFDRKRAREDKLLIPERGIDEDFDE 770 Query: 464 TRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRF 523 K + S+ + E K +N K Y +EV A+ + K Sbjct: 771 CADAITGIKGKLQSVLERSKAELKCRNAKFTDVGKEIYQVEV--PKATKVPKSW------ 822 Query: 524 IHRQTMSN--LTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQ 581 RQ +N + RF EL +L + A + + E+ +E A + Sbjct: 823 --RQMSANNAVRRFYFAELDELVRGLQEAEETHSQLTREAALRFCKRFDADAEIWQEAIR 880 Query: 582 VIAIID--ISIALAILAKEQNYCRPIIDNSTNFIVK--DGRHPIVEKTLKQQSSKPFIAN 637 +IA +D IS+A A + Q RP + +V+ + RHP + T+ FI N Sbjct: 881 IIAQLDCLISLAKASSSLGQPSARPTFVDEERSVVEFEELRHPCMLNTVDD-----FIPN 935 Query: 638 DCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLF 697 D L ++ + LLTG N GKST LR + + VIMAQ+G YVPA A + VD++ Sbjct: 936 DIRLG----GDAANISLLTGANAAGKSTILRMSCIAVIMAQIGCYVPAVSARLTPVDRIM 991 Query: 698 SRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEY 757 SR+G+ DN+ + +STF VE+ ET IL++AT +S VILDE+GRGT++ DG+++A A + + Sbjct: 992 SRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVLHH 1051 Query: 758 LHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ--VSDSNEGIIFLHKVIPGIADHSYG 815 + C G ATH+H L ++ +Q V + N + FL+++ G+A+ S+G Sbjct: 1052 VASHIGCVGFFATHYHSLATEFENHPEICAKRMQILVDNENRRVTFLYRLEDGVAEGSFG 1111 Query: 816 IQVGKLAGLPNTVISRAYDILKTFE 840 + + G+P+ VI A + +E Sbjct: 1112 MHCAAMCGIPDRVIEEAEVAAREWE 1136 >gi|115397903|ref|XP_001214543.1| DNA mismatch repair protein msh6 [Aspergillus terreus NIH2624] gi|114192734|gb|EAU34434.1| DNA mismatch repair protein msh6 [Aspergillus terreus NIH2624] Length = 1206 Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 226/866 (26%), Positives = 406/866 (46%), Gaps = 82/866 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P +QY EIK D++VF++ G FYEL+ +DA + + + LT R ++ M G Sbjct: 316 SPFEKQYWEIKQKFWDTVVFFKKGKFYELYENDATIGHQLFDLKLTDR-----VNMRMVG 370 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL-------EAKKRGNKS-LVRRNVVRLVTPG 137 VP + +H+ + + G++IA +Q ES L + KK G + ++RR + ++T G Sbjct: 371 VPEMSLDHWANQFVAKGYKIARVDQAESALGKEMRERDGKKGGKEDKVIRRELSCVLTAG 430 Query: 138 TLTEDQLLSPTDSNYLMAVARI----RTEWAIAWIDISTGIFKISTSNHD----RLISDI 189 TL E +L S + +A+ + +A++D +TG F +S D + + + Sbjct: 431 TLVEGSMLHDDMSTFCVAIKEAIIDDHPAFGLAFVDTATGQFFMSELMDDADMTKFETFV 490 Query: 190 MRIDPREIIFSEKELSHAEYKSLFETLGNVAVA---QPNVFF---DHSISESRIADYYNI 243 + P+E++ + +S + L G + +P F D ++ E +++Y+ Sbjct: 491 AQTRPQELLLEKSTISPKALRILKNNTGPTTIWNYLKPGKEFWEADITVKELDVSEYFVS 550 Query: 244 TTVDTFGSFSQVEK---------TAAAAAISYIKKTQM-VNKPTIG-YPEREDIQ--STL 290 D ++ + + +A A + Y++ ++ + TIG + + I+ S+L Sbjct: 551 EDDDNLKAWPEALRVARDKELVMSAFGALVQYLRVLKLDRDLITIGNFSWYDPIKKASSL 610 Query: 291 FIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLD 349 +D N+EI + G + +L + ++ IT G R+F + + PL D+ KIN RLD Sbjct: 611 VLDGQTLINMEIFANSFDGGSDGTLFQLLNRCITPFGKRMFKQWVCHPLVDAKKINARLD 670 Query: 350 SINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFL 409 +++ +P + + L PD+ R +SR+ + +D + +G ++L Sbjct: 671 AVDALNADPSVRDQFSSQLTKMPDLERLISRVHAANCKAQDFLRVLEGFEQIAYTMSLLK 730 Query: 410 KNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFL--RDGADASLDETRSL 467 ++ E G + +L +L+ L + + RD G L + G + D +++ Sbjct: 731 ESGSGE---GVIGQLINAMPNLDDLLEYWKTAFDRSKARDNGILVPKLGVEEDFDNSQAN 787 Query: 468 RDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQ 527 Q + +L + +E + + N Y +EV + K + Sbjct: 788 ISQLHNDLDNLLKRVRKELGSTAICYRDNGKEIYQMEVPIKVKGIPKN-------WDQMS 840 Query: 528 TMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIID 587 + R+ EL L ++ A + I E E + A ++++ +D Sbjct: 841 ATKQVKRYYFPELRTLIRKLQEAQETHSQIVKEVAGRFYARFDEHYATWLAAVRIVSQLD 900 Query: 588 --ISIALAILAKEQNYCRPII--DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSC 643 IS+A A + Q CRP+ D + ++ RHP + ++ FI ND L Sbjct: 901 CLISLAKASASLGQPSCRPVFVDDERSVLEFEELRHPCLVSSVDD-----FIPNDIQLGG 955 Query: 644 --PNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVG 701 PN + LLTG N GKST LR + VIMAQ+G Y+P A + VD++ SR+G Sbjct: 956 VRPN------IDLLTGANAAGKSTVLRMTCVAVIMAQIGCYLPCQSARLTPVDRIMSRLG 1009 Query: 702 SADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHET 761 + DN+ + +STF VE+ ET IL++AT +S VILDE+GRGT++ DG+++A A + ++ Sbjct: 1010 ANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVLHHVATH 1069 Query: 762 NRCRGLLATHFHELT-------DLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSY 814 G ATH+H L +++ + H V D I FL+K+ G+A+ S+ Sbjct: 1070 IGALGFFATHYHSLATEFEGHPEIAPKRMKIH-----VDDEERRITFLYKLEDGVAEGSF 1124 Query: 815 GIQVGKLAGLPNTVISRAYDILKTFE 840 G+ + G+P+ VI RA K +E Sbjct: 1125 GMHCAAMCGIPDKVIERAEVAAKQWE 1150 >gi|255548475|ref|XP_002515294.1| ATP binding protein, putative [Ricinus communis] gi|223545774|gb|EEF47278.1| ATP binding protein, putative [Ricinus communis] Length = 1306 Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 258/946 (27%), Positives = 429/946 (45%), Gaps = 154/946 (16%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 +KS + RQ+ E KS + D ++F++MG FYELF DA + ++ L + +++ + Sbjct: 340 VKSLSGGQRQWWEFKSKHMDKVLFFKMGKFYELFEMDAHVGAKELDL------QYMKGEQ 393 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESP----LEAKKRGNK-SLVRRNVVRLVTP 136 P CG P + ++KL + G+R+ + EQ E+P L K++G+K +V+R + +VT Sbjct: 394 PHCGFPERIFSMNVEKLTRKGYRVLVIEQTETPEQLELRRKEKGSKDKVVKREICAVVTK 453 Query: 137 GTLTEDQLLSPT-DSNYLMAVAR---------IRTEWAIAWIDISTGIFKISTSNHDRLI 186 GTLTE +LL+ D++YLMAV + I D++T + D Sbjct: 454 GTLTEGELLTANPDASYLMAVTESQQNLEGQNFEPTFGICVADVATSRIILGQFVDDSEC 513 Query: 187 SDIMRI----DPREIIFSEKELSHAEYKSLFETLGNV----------------AVAQPNV 226 S + R+ P EII K LS + L N V + + Sbjct: 514 SSLCRLLSELRPVEIIKPAKSLSSETERLLLRHTRNPLVNDLVPLSEFWDAEKTVHEVKI 573 Query: 227 FFDHSISESRIADYYNITTVDTF----------------------GSFSQVEKTAAAAAI 264 + H IS+ + N DT G ++ +A + Sbjct: 574 IYKH-ISDQSASRSLNKEDKDTANLQFTEEGPSCLPEILLELVNKGDNGRLALSALGGTL 632 Query: 265 SYIKKTQMVNKPTIGYPEREDIQSTLF----------IDSAARSNLEILR-TLSGSREQS 313 Y+K+ +++ + + + E + + F +D+AA NLEI + +G + Sbjct: 633 YYLKQA-FLDETLLRFAKFESLPCSDFCDVAQKPYMILDAAALENLEIFENSRNGGLSGT 691 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFF--IQNPILINPIQKILKSS 371 L +++ +T G RL +A PL I R D++ + P + +K L Sbjct: 692 LYAQLNHCVTAFGKRLLKTWLARPLYHLRSIVDRQDAVAGLRGVNQPATLE-FRKALSRL 750 Query: 372 PDVPRSLSRLKI-----GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRG------A 420 PD+ R ++R+ GR K + + D + +L F+ LRG A Sbjct: 751 PDMERLIARIFASSEANGRNANK-VILYEDAAK---KLLQEFIS-----ALRGCELMEQA 801 Query: 421 VEKLKKLPQSLE-KTLSSMLSDD---------LPTFKRDGGFL----------RDGADAS 460 L + +++E + L +L+ L FK ++ +G D Sbjct: 802 CSSLAVILENVESRQLHHLLTPGKSRPHIHSILKHFKEAFDWVEANNSGRVIPHEGVDIE 861 Query: 461 LDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVLKKDL 517 D S ++ + I +SL E+ KI K++ Y +EV + +D Sbjct: 862 YD---SACEKLRVIESSLTKHLKEQQKILGDKSIMYVTVGKEAYLLEVPEHFRGSIPRDY 918 Query: 518 ESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLD 577 E R + R+ T + L ++ A + EL IL I++ E D Sbjct: 919 EL------RSSKKGFYRYWTPSIKKLLGELSQAESEK---ELALKNILQRLIVQFCEHHD 969 Query: 578 NASQV---IAIIDISIALAILAK--EQNYCRPIIDNSTN-----FIVKDGRHPIVEKTLK 627 Q+ A +D+ I+LAI + E CRP+I S++ F K HPI++ Sbjct: 970 KWRQLNSATAELDVLISLAIASDFYEGQACRPVILGSSSSEMPCFSAKSLGHPILKSDSL 1029 Query: 628 QQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASY 687 + + F+ ND + + LLTGPNMGGKST LRQ L VI+AQ+G+ VPA Sbjct: 1030 GKGA--FVPNDVSI---GGSDGASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAES 1084 Query: 688 AHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDG 747 + VD++F R+G+ D++ +G+STF+ E+ ETA +L+ AT S V LDE+GRGT+T DG Sbjct: 1085 FELSPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVTLDELGRGTSTSDG 1144 Query: 748 LSIAWATIEYLHETNRCRGLLATHFHELT-DLSKSLK-RFHNATLQVS---DSNEGIIFL 802 +IA + +E+ +CRG+ +TH+H L+ D K K + QV E + FL Sbjct: 1145 QAIAESVLEHFVHRVQCRGMFSTHYHRLSVDYQKDPKVSLCHMACQVGRGVGEVEEVTFL 1204 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 +++ PG SYG+ V +LAGLP+ ++ +A + FE +Y +++ Sbjct: 1205 YRLTPGACPKSYGVNVARLAGLPDPILQKAAAKSREFEVIYGKHRR 1250 >gi|328779790|ref|XP_392346.4| PREDICTED: probable DNA mismatch repair protein Msh6 [Apis mellifera] Length = 1129 Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 256/923 (27%), Positives = 422/923 (45%), Gaps = 140/923 (15%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 L TP MRQ+ E+KS + D ++F+++G FYEL+ DA++ L +T RG+ Sbjct: 218 LNQQTPAMRQWWELKSKHFDCVLFFKLGKFYELYHMDAVIGVNELHLTYM-RGEFAHSGF 276 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESP-LEAKKRGN-------KSLVRRNVVRL 133 P G +A+ LI+ G+++A EQ E+P + A++ N +V+R + ++ Sbjct: 277 PEIGYGRFSAS-----LIERGYKVARVEQTENPDMMAQRVSNMIRPTKFDKVVKREICQI 331 Query: 134 VTPGT-LTEDQLLSPT--DSNYLMAVARIR------TEWAIAWIDISTGIFKISTSNHDR 184 + GT + Q + P+ +SNYL++V + + + ++D + G F + DR Sbjct: 332 TSKGTRVYTPQDIEPSTPNSNYLLSVIEKCPSGSNISHYGVCFLDTTIGDFYLGQFEDDR 391 Query: 185 ----LISDIMRIDPREIIFSEKELSH---------------------AEYKSLFETLGNV 219 L++ + P +++ LS +++ S TL N+ Sbjct: 392 CNSRLLTLLAHYPPVHVVYERGNLSQKTLQIFNNNLAACIKESLLRESQFWSSSTTLKNL 451 Query: 220 AVAQPNVFFDHSISE----SRIADYYNITTVDTFGSFSQVEKTAAAAAIS--------YI 267 +F S SE + + Y N + D+ G +K A A+ Y+ Sbjct: 452 HEGD---YFKKSDSEFQWPTGLQSYLNKS--DSLGLTPAEDKELAVHALGGCIYLLKEYL 506 Query: 268 KKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEI----LRTLSGSREQSLLKTIDYSIT 323 + Q++ + D + F S +N+ + + L E SL+KT+D T Sbjct: 507 LEQQLLAQGRFKTYIPPDFSNKTFEASKFANNMVLDAITINNLRIFGEGSLIKTLDRCCT 566 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL E I P I R ++I + + + + IL PD+ R LS++ Sbjct: 567 AFGKRLLREWICRPSCRKDVIIERQEAIQELMNHSEAVQTTRSILAGLPDLERLLSKIH- 625 Query: 384 GRGEPK------------------------DIAVIRDGIRSGINILNLFLKNDLPEELRG 419 +G P D +G + I+ LF D L Sbjct: 626 AQGNPAKQNNHPDGRAIMFEGQTYSKKRITDFITTLNGFEDVLKIIALF--EDFCSTLIS 683 Query: 420 AVEKLK---KLPQSLEKTLSSMLSD-DLPTFKRDGGFL-RDGADASLDETRSLRDQSKRI 474 K++ + P SL ++L + D K+ G + + G D+ D ++ K+ Sbjct: 684 KCCKVEPDGEFP-SLRESLDYFKTAFDHEEAKKVGCIVPKKGVDSEYDSVLMELEEIKKD 742 Query: 475 IASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTR 534 K + +K + ++ Y IE+ S + E + + R Sbjct: 743 SEQYLEKQKKHFGVK-ITFHGSDKKRYQIEIPDSQTKKVGAGFELQSQ------RKGYKR 795 Query: 535 FTTLELIDLENRITNATNSALLIELESFEILSNAIIEQ-SESLDNASQVI---AIIDISI 590 + T E +L +R NA + + L+ I Q SE D S + +++D+ I Sbjct: 796 YYTAESKELLSRQINAEEHRDKV----LKDLNRRIFAQFSEKYDMWSMAVYKLSVLDVLI 851 Query: 591 ALAILAKEQNYCRPIIDNSTN---FI-VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPND 646 +L A + C P I++ TN FI ++DGRHP + S FI ND L+ Sbjct: 852 SLTEYAFSGDMCIPEINDGTNEKIFIDIRDGRHPCI-------ISDTFIPNDTLLAT--- 901 Query: 647 KNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNL 706 +N +LTGPNMGGKST +RQ AL+ IMAQ+GSYVPAS + +VD++F+R+G+ D++ Sbjct: 902 ENFASFMILTGPNMGGKSTLMRQVALLTIMAQIGSYVPASSCRLTLVDRIFTRLGANDDI 961 Query: 707 ASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRG 766 +G+STF+VE+ ET++IL AT S V+LDE+GRGT+T DG +IA A + L + N CR Sbjct: 962 LAGQSTFLVELSETSAILQHATPYSLVLLDELGRGTSTYDGTAIAAAVVNALTKLN-CRT 1020 Query: 767 LLATHFHELTDLSKSLKRF---HNATL-----QVSDSNEGIIFLHKVIPGIADHSYGIQV 818 L +TH+H L + K+ K+ H A + Q S E + FL+K+ G SYG Sbjct: 1021 LFSTHYHSLVEDYKNNKKITLAHMACMVENEEQDKVSQETVTFLYKLSEGACPKSYGFNA 1080 Query: 819 GKLAGLPNTVISRAYDILKTFEK 841 +L G+P + SRA++I K E+ Sbjct: 1081 ARLGGVPAVITSRAHEISKKLEQ 1103 >gi|21951840|gb|AAM82366.1| mismatch repair protein MutS [Salmonella enterica] Length = 376 Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 138/348 (39%), Positives = 209/348 (60%), Gaps = 15/348 (4%) Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + A Sbjct: 1 YNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPELKEYEDKVLTSKGKA 54 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L +E + ++ L + ++ L ++ +A +D+ + LA A NY P+ + + Sbjct: 55 LALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLAERAYTLNYTCPVFTDKPGIRI 114 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 115 TEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTALIA 165 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V+ Sbjct: 166 LLAYIGSYVPAQSVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVL 225 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 226 MDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALE 285 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 286 HGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 333 >gi|281210061|gb|EFA84229.1| DNA mismatch repair protein [Polysphondylium pallidum PN500] Length = 1354 Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 255/894 (28%), Positives = 423/894 (47%), Gaps = 132/894 (14%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ +Q IEIK PD+++ G ++ F +DA +A+R L I ++ K+ Sbjct: 414 TPLEQQVIEIKKQYPDTVLMVECGYKFKFFGNDAEIATRVLNIY-----SYVAKNFLNAS 468 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESP-LEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 VPV ++++L+ G+++ + EQIE+ L+A R + RL T T +D Sbjct: 469 VPVQRLYFHLRRLVYAGYKVGVVEQIETAALKAVSSSKSQPFERKLTRLYTASTFIDDID 528 Query: 145 LSPTDS-----NYLMAVARIR-----TEWAIAWIDISTGIFKISTSNHD----RLISDIM 190 ++ D NYL++ TE + + ISTG T D L + + Sbjct: 529 INENDPVNISPNYLVSFTEQYKTEDLTEISFVAVSISTGEIICDTFKDDVLRTHLETRLT 588 Query: 191 RIDPREIIFS-----EKE----------------LSHAEYKSL--FETLGNVAV-AQPNV 226 + P E++ EK+ LS+ K + + L NV V Sbjct: 589 HLKPTEVLLPPERTIEKQQQDTTTTTVVSPPYLYLSNLTKKCIKTYCKLNNVRVQTMTEE 648 Query: 227 FFDHSISESRIADYY--NITTVDTFGSFSQVEKTAAAA---AISYIKK----TQMVNKPT 277 +D+ + S + ++Y + +T +T S + K +SY+K+ T ++ K + Sbjct: 649 LYDYDRALSSLVEFYEADKSTANTLSSVMMLPKAQVICLNIQLSYLKEFIQFTSLL-KVS 707 Query: 278 IGYPEREDIQSTLFIDSAARSNLEILRT-LSGSREQSLLKTIDYSITGAGGRLFAERIAS 336 + + +Q+ L + + NLEIL+ S + SL ++ + T AG RL E + Sbjct: 708 TNF-KTFTLQNHLILPHSTIENLEILKNEWDKSEKGSLFWVLNQTQTIAGRRLIVEWLCK 766 Query: 337 PLTDSTKINTRLDSINFFIQNPILI--NPIQKILKSS-PDVPRSLSRLKI-GRGEPKDIA 392 PL I R D++N I + N I LK S PD+ R+LS++ + PKD Sbjct: 767 PLMKLELIKERQDAVNELITSTKTTSHNLISTFLKGSIPDLQRNLSKIYYQSQCLPKDF- 825 Query: 393 VIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGF 452 ++ + F K D +L V LK+L L + + + +R + Sbjct: 826 ---------LSTMKSFQKLD---QLFKEVSGLKELKSKLLNDIFTNEQSNTKFNERLQFY 873 Query: 453 LR--DGADASLDETRSLRDQSK--RIIASLQ--LKYAEETKIKNL-KIKHN--------- 496 L D AS DE +L S +I Q +K +E +L KI+ + Sbjct: 874 LSSIDHTAASKDEKENLWSHSNIYPLIVETQEKIKTVQEELSDHLRKIRKDLGKPTLEYL 933 Query: 497 ----NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRF------TTLELIDLENR 546 NNL Y IE+ + SV K ++ L R+ TTL+L+ +NR Sbjct: 934 HQPKNNLEYLIELPINFKSVPKD-------WLKVNATQKLARYHVPAVVTTLKLLQ-QNR 985 Query: 547 --ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP 604 +T + L L F E N +A +D +L+++ K+ Y RP Sbjct: 986 ELLTIRAKESWLDFLSKFS-------EDYSLFSNVISKLANLDCLYSLSVVGKQAGYVRP 1038 Query: 605 IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 ++ + +GRHPIVE L+ + ++ N LS ++ + ++TGPNMGGKS Sbjct: 1039 EFTENSGIEIVNGRHPIVEHLLQGEQ---YVPNSVRLS----PDAERAMIITGPNMGGKS 1091 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 +F+RQ +LIVIMAQ+GS VPA+ +G+VD +++R+G+ DN+ G STF VE+ ET++IL Sbjct: 1092 SFIRQTSLIVIMAQIGSNVPAASCRLGVVDAIYTRMGAHDNIEKGSSTFFVELQETSAIL 1151 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK---- 780 QAT +S VILDE+GRGT+T DG++IA++++ Y+ E +C L TH+ L +L Sbjct: 1152 QQATPRSLVILDELGRGTSTHDGVAIAYSSLRYIIEKKQCFCLFVTHYPLLAELENQYPT 1211 Query: 781 SLKRFHNATLQVSDSN-----EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVI 829 ++ +H ++ + +IFL++V G A +SYG+ V ++A LP +V+ Sbjct: 1212 TVANYHMGFIEQKQEDYTPAIPKVIFLYQVTKGAAKNSYGLNVARIADLPKSVL 1265 >gi|296811026|ref|XP_002845851.1| DNA mismatch repair protein msh6 [Arthroderma otae CBS 113480] gi|238843239|gb|EEQ32901.1| DNA mismatch repair protein msh6 [Arthroderma otae CBS 113480] Length = 1216 Score = 264 bits (674), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 235/873 (26%), Positives = 397/873 (45%), Gaps = 91/873 (10%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P +QY EIK D++VF++ G FYEL+ +DA + + + LT R ++ M G Sbjct: 317 SPFEKQYWEIKQKFWDTIVFFKKGKFYELYENDATIGHQLFDLKLTDR-----VNMRMVG 371 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL-----EAKKRGNK--------SLVRRNVVR 132 VP + +H+ + + G +IA +Q ES L E + +G+K +++R + Sbjct: 372 VPEMSLDHWANQFVAKGFKIARVDQSESALSKEMREREDKGSKMGKAQKEDKVIKRELAC 431 Query: 133 LVTPGTLTEDQLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFKISTSNHD----R 184 ++T GTL E ++ S Y +A+ + + I+++D +TG F +S D R Sbjct: 432 VLTTGTLVEGSMIQGDMSTYCVAIKEAIVDGLPAFGISFVDTATGQFFLSEFIDDVDMTR 491 Query: 185 LISDIMRIDPREIIFSEKELSHAEYKSLFE-----TLGNVAVAQPNVF-FDHSISESRIA 238 + + + P+E++ + +S + L TL N + D ++ E Sbjct: 492 FETFVAQTRPQELLLEKSVMSTKALRILKNNTSPTTLWNYLKPVKEFWEADMTVRELNAG 551 Query: 239 DYYNITTVDTFGSFSQVEK---------TAAAAAISYIKKTQMVNK-PTIG-YPEREDIQ 287 +Y+ ++ V + +A A + Y++ ++ TIG + + I+ Sbjct: 552 EYFGPGDQSNLETWPHVLRDAQDKDLVMSAFGALLQYLQMLKIGRDLVTIGNFTWYDPIK 611 Query: 288 --STLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKI 344 S+L +D NLEI T GS E +L + ++ +T G RLF + + PL D KI Sbjct: 612 KASSLVLDGQTLINLEIFANTYDGSSEGTLFQLLNRCVTPFGKRLFKQWVCHPLVDIAKI 671 Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 N RLD++ + + L PD+ R +SR+ G + +D + +G Sbjct: 672 NARLDAVESLNADNTVREQFSSQLTKMPDLERLISRIHAGTCKAQDFVRVLEGFEQIEYT 731 Query: 405 LNLFLK----NDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFL--RDGAD 458 + L + L +L A+ L L + E D P R+ G L +G + Sbjct: 732 MGLLKGAGSGHGLIGQLISAMPDLNSLLRFWETAF------DRPK-ARESGILVPEEGIE 784 Query: 459 ASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLE 518 D ++ DQ + + + + +E K + K N Y +EV ++ K Sbjct: 785 EEFDASKENIDQLEEKLQQVLHRVRKELKCSTIVFKDNGKEIYQLEVPIKVKNIPK---- 840 Query: 519 SKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDN 578 S D+ + R+ EL L ++ A + + E S Sbjct: 841 SWDQM---SATKQVKRYYFPELRALIRKLQEARETHAQVVKGVAGRFYARFDENYSSWLA 897 Query: 579 ASQVIAIIDISIALAILAKEQNY--CRPII--DNSTNFIVKDGRHPIVEKTLKQQSSKPF 634 A ++IA +D I LA + + CRPI D + + RHP + + F Sbjct: 898 AVKIIAQLDCLIGLAKASTALGHPSCRPIFADDERSVLNFHELRHPCMMPNVGD-----F 952 Query: 635 IANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVD 694 I ND L +S + LLTG N GKST LR VIMAQ+G YVP YA + VD Sbjct: 953 IPNDIKLG----GDSSNINLLTGANAAGKSTVLRMTCTAVIMAQIGCYVPCEYARLTPVD 1008 Query: 695 KLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWAT 754 ++ SR+G+ DN+ + +STF VE+ ET IL++AT +S VILDE+GRGT++ DG+++A A Sbjct: 1009 RIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAV 1068 Query: 755 IEYLHETNRCRGLLATHFHELT-------DLSKSLKRFHNATLQVSDSNEGIIFLHKVIP 807 + ++ G ATH+H L +++ R H V D+ + FL+K+ Sbjct: 1069 LHHVATHIGALGFFATHYHSLAAEFEGHPEIAARRMRIH-----VDDAERRVTFLYKLED 1123 Query: 808 GIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 G+A+ S+G+ + G+P+ V+ A K +E Sbjct: 1124 GVAEGSFGMHCASMCGIPSKVVEGAEVAAKQWE 1156 >gi|21951836|gb|AAM82364.1| mismatch repair protein MutS [Salmonella enterica] gi|21951848|gb|AAM82370.1| mismatch repair protein MutS [Salmonella enterica] gi|21951850|gb|AAM82371.1| mismatch repair protein MutS [Salmonella enterica] Length = 376 Score = 264 bits (674), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 138/348 (39%), Positives = 209/348 (60%), Gaps = 15/348 (4%) Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + A Sbjct: 1 YNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPELKEYEDKVLTSKGKA 54 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L +E + ++ L + ++ L ++ +A +D+ + LA A NY P + + Sbjct: 55 LALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLAERAWTLNYTCPTFTDKPGIRI 114 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 115 TEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTALIA 165 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++A +GSYVPA + IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V+ Sbjct: 166 LLAWIGSYVPAQHVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVL 225 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 226 MDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALE 285 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 286 HGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 333 >gi|169773547|ref|XP_001821242.1| DNA mismatch repair protein Msh6 [Aspergillus oryzae RIB40] gi|238491536|ref|XP_002377005.1| DNA mismatch repair protein Msh6, putative [Aspergillus flavus NRRL3357] gi|83769103|dbj|BAE59240.1| unnamed protein product [Aspergillus oryzae] gi|220697418|gb|EED53759.1| DNA mismatch repair protein Msh6, putative [Aspergillus flavus NRRL3357] Length = 1201 Score = 264 bits (674), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 226/864 (26%), Positives = 404/864 (46%), Gaps = 78/864 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P +QY EIK D++VF++ G FYEL+ +DA + + + LT R ++ M G Sbjct: 311 SPFEKQYWEIKQKFWDTVVFFKKGKFYELYENDATIGHQLFDLKLTDR-----VNMRMVG 365 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL-------EAKKRGNKS-LVRRNVVRLVTPG 137 VP + +H+ + + G +IA +QIES L + KK G + ++RR + ++T G Sbjct: 366 VPEMSLDHWANQFVAKGFKIARVDQIESALGKEMRERDGKKGGKEDKVIRRELSSVLTAG 425 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFKIST----SNHDRLISDI 189 TL E +L S Y +A+ E + +A++D +TG F +S ++ + + + Sbjct: 426 TLVEGSMLQDDMSTYCVAIKEAIIEDFPAFGLAFVDTATGQFFLSEFVDDADMTKFETFV 485 Query: 190 MRIDPREIIFSEKELSHAEYKSLFETLGNVAVA---QPNVFF---DHSISESRIADYYNI 243 + P+E++ + +S + L G + +P F D ++ E +++Y+ Sbjct: 486 AQTRPQELLLEKSTVSQKALRILKNNTGPTTIWNHLKPGKEFWEADITVKEMDVSEYFVS 545 Query: 244 TTVDTFGSFSQVEK---------TAAAAAISYIKKTQMVNKP-TIG-YPEREDIQ--STL 290 D ++ + + +A A + Y++ ++ TIG + + I+ S+L Sbjct: 546 EDDDNLKAWPEALRAARDKELVMSAFGALVQYLRLLKLDRDLITIGNFSSYDPIKKASSL 605 Query: 291 FIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLD 349 +D N+EI + G + +L + ++ IT G R+F + + PL D+ KIN RLD Sbjct: 606 VLDGQTLINMEIFANSFDGGSDGTLFQLLNRCITPFGKRMFKQWVCHPLIDAKKINARLD 665 Query: 350 SINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFL 409 +++ +P + + L PD+ R +SR+ + +D + +G I L Sbjct: 666 AVDALNADPNIRDQFSSQLTKMPDLERLISRIHAANCKAQDFLRVLEGFEQ-IEYTVSLL 724 Query: 410 KNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFL--RDGADASLDETRSL 467 K+ E G + +L L + L + T R+ G L + G + D ++ Sbjct: 725 KDSGSGE--GVIGQLISAMPDLNELLEYWKTAFDRTKARENGILVPKSGVEEDFDNSQEY 782 Query: 468 RDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQ 527 ++ + SL + E + + N Y +EV ++ K + Sbjct: 783 IEELHNELDSLLKRVRRELGSTAICYRDNGKEIYQLEVPIKVKNIPKN-------WDQMS 835 Query: 528 TMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIID 587 + R+ EL + ++ A + I E E + A ++I+ +D Sbjct: 836 ATKQVKRYYFPELRTIIRKLQEAQETHSQIVKEVAGRFYARFDEHYITWLAAVKIISQLD 895 Query: 588 --ISIALAILAKEQNYCRPII--DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSC 643 IS+A A + Q CRP+ D + ++ RHP + +++ FI ND L Sbjct: 896 CLISLAKASSSLGQPSCRPVFVEDERSVLEFEELRHPCLLSSVED-----FIPNDIKLG- 949 Query: 644 PNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSA 703 + + LLTG N GKST LR + VIMAQ+G Y+P A + VD++ SR+G+ Sbjct: 950 ---GDRANIDLLTGANAAGKSTVLRMTCVAVIMAQIGCYLPCQSARLTPVDRIMSRLGAN 1006 Query: 704 DNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNR 763 DN+ + +STF VE+ ET IL++AT +S VILDE+GRGT++ DG+++A A + ++ Sbjct: 1007 DNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVLHHVATHIG 1066 Query: 764 CRGLLATHFHELT-------DLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGI 816 G ATH+H L +++ + H V D + FL+K+ G+A+ S+G+ Sbjct: 1067 ALGFFATHYHSLAAEFEGHPEITPKRMKIH-----VDDEERRVTFLYKLEDGVAEGSFGM 1121 Query: 817 QVGKLAGLPNTVISRAYDILKTFE 840 + G+ + VI RA K +E Sbjct: 1122 HCAAMCGISSKVIERAEVAAKQWE 1145 >gi|156083216|ref|XP_001609092.1| DNA repair protein [Babesia bovis T2Bo] gi|154796342|gb|EDO05524.1| DNA repair protein, putative [Babesia bovis] Length = 1313 Score = 264 bits (674), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 246/922 (26%), Positives = 403/922 (43%), Gaps = 149/922 (16%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI-PMC 84 T M+Q+ IK D L+F++MG FYELF+ DA + + G+ + +G + P Sbjct: 388 TDCMQQWWNIKQDRFDQLLFFKMGRFYELFYHDACIVQQICGL------RWMGSEAKPHV 441 Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVV-----RLVTPGTL 139 G P + + Y + G+++ + EQ E+P + ++R +S R+N V ++TPGT+ Sbjct: 442 GFPEKSLHIYASSCVDHGYKVVVVEQTETPQQLEQRNRESGQRQNAVSRAICEIITPGTI 501 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTS-NHD----RLISDIMRID- 193 T ++L+ S L+ + + E D G + TS +H+ +L S + R Sbjct: 502 TRPEMLT-KQSRPLLLITDVHREDMGTATDAKCGNDEGFTSPSHNESKTKLPSSLGRRTF 560 Query: 194 --PREI------IFS----------------EKELSHAEYKSLFETLGNVAVAQPNVFFD 229 PR + +F + L + +++ L V + D Sbjct: 561 ELPRCLESGTGRMFCVCSFDASVGSLCLGTLDISLGMGQLRAIIAALSPAEVVVDSTLSD 620 Query: 230 HSISESRIADY--YNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNK--PTIGYPE--- 282 H +A Y + +T+ D F + A ++ + T +NK T+G+ Sbjct: 621 HLEDLREMATYLGFELTSFDCFEDVTHATVGDKDATVAEVDYTDFMNKVNATLGHQTFMY 680 Query: 283 ----------------------------REDIQSTLFIDSAARSNLEILRTLSGSREQSL 314 + + + +D A + LE+ ++ G SL Sbjct: 681 QRVILLVQRYLKSVMLNNLLNYCTISILSSNYRDCMTLDCAVLTQLELFKSQEGDVSSSL 740 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDV 374 ++ + G R+ + + PLT + +IN R + FF QN + Q L PD+ Sbjct: 741 FGVLNKTSCAFGERMLRQWLLKPLTCANRINERSAVVEFFHQNFSVCRAYQDQLCQLPDL 800 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 RS +L +AV D GI L + + + E+ +K L KT Sbjct: 801 ERSFGKLLNAAAGCYKMAVYFD---EGI-FLKQYTMHQMMEQFMLLQRYVKALFSDCGKT 856 Query: 435 LSSMLSDDLPTFKRDGG------------FL-------------RDGADASLDETRSLRD 469 DLP +D FL R G D R L + Sbjct: 857 -----GQDLPILLQDMNKAIQDVAPHCEYFLSLLDISGPKSCHTRSGVWQESDRVRDLIN 911 Query: 470 QSKRIIASLQLKYAEETK--IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQ 527 Q+ +++LQ K EE + + K H Y +E+ + + + F Sbjct: 912 QT---VSALQ-KELEEIRDMCPSAKFVH-TKFRYEVEIQEKE----YRRIATAKAFEVTS 962 Query: 528 TMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIID 587 T S R ++ L +++ + EL+ F+ + + ++ + + + A +D Sbjct: 963 TRSGFVRIHNRVIVSLVADLSDHEFALSQSELQFFQHMVKQLHDRRDVFNKLLVIAAELD 1022 Query: 588 ISIALAILAKEQNYCRP-----IIDNSTN---FIVKDGRHPIVEKTLKQQSSKPFIANDC 639 +LA +AK N P +ID T +++D HPIV Q + F+ ND Sbjct: 1023 CLCSLAAVAK--NSVLPLTRAEVIDRGTAEPFVLIRDAVHPIV----SQIDPEGFVPNDV 1076 Query: 640 DLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSR 699 L + L LLTGPNMGGKST LRQ AL VIMAQMGS+VP S + +VD++F+R Sbjct: 1077 QL---GHGDYQPLILLTGPNMGGKSTLLRQVALCVIMAQMGSFVPGSECKMTVVDRVFTR 1133 Query: 700 VGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLH 759 +G+ DN+ G+STF++EM E ++IL+ AT S V++DE+GRGT+T + +IA A +E L Sbjct: 1134 LGAYDNIIQGKSTFLIEMEEASTILHSATRDSLVLVDELGRGTSTFEATAIAAACLEKLS 1193 Query: 760 ETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS--DSNEGIIFLHKVIPGIADHSYGIQ 817 CRG+ THFHE+ +K L + S D + I FL+K+ G+ S+GI Sbjct: 1194 AIG-CRGVFTTHFHEVWSYAKKLDNVSLCHMAASLDDKEKSITFLYKLSLGLCPESHGIH 1252 Query: 818 VGKLAGLPN------TVISRAY 833 V +LAG+P V+SR+Y Sbjct: 1253 VARLAGIPKHVTDMAEVVSRSY 1274 >gi|135075|sp|P26359|MSH3_SCHPO RecName: Full=DNA mismatch repair protein msh3; AltName: Full=Mating-type switching protein swi4; AltName: Full=MutS protein homolog 3 gi|5113|emb|CAA43603.1| Swi4 [Schizosaccharomyces pombe] Length = 993 Score = 264 bits (674), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 241/906 (26%), Positives = 414/906 (45%), Gaps = 129/906 (14%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ +QY+E+K ++++ +G + F DA +AS LGI+ + + Sbjct: 104 TPLEQQYLELKKNYQETILAIEVGYKFRFFGKDAKIASEVLGISC-----YFEHNFLNAS 158 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESP-LEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 VP + ++++++LI G ++A+ Q E+ L++ +L R V R++T GT +D Sbjct: 159 VPSYRIDYHLERLINFGLKVAVVRQTETAALKSTSSSRNTLFDRRVARVLTKGTTLDDSF 218 Query: 145 L--------SPTDSNYLMAVA---------RIRTEWAIAWIDISTGIFKISTSNHDRLIS 187 + S +++ VA R + + I +S+G T+ +D Sbjct: 219 FRFEQTQHGTLQASQFILCVADNVDKSKAKSGRVQVGLIAIQLSSG-----TTVYDHFQD 273 Query: 188 DIMR---------IDPREIIFSEKELSHA-----EYKSLFETLGNVAVAQPNVFFDHSIS 233 D +R P E+I+S K S + Y S +T G V Q V D ++ Sbjct: 274 DFLRSELQTRLSHFQPCELIYSNKLSSESVALLNHYVSTEKTCGRVVRVQHAVQQDVKLA 333 Query: 234 ESRIADYYNITTV-----------DTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIG-YP 281 + D+++ + + S + AISY+ + + + + Sbjct: 334 LENLQDFFSSKCIMSGSKIIELHMEKVKSLHSLSIICLDMAISYLMEFSLEDLFVASNFY 393 Query: 282 EREDIQSTLFIDSAARSNLEI-LRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTD 340 + D S++ + A LE+ + + SL +D + T G R+ + PL D Sbjct: 394 QPFDSISSMVLSKQALEGLELFVNQTDHTPVGSLFWVLDRTYTRFGQRMLQRWLQKPLVD 453 Query: 341 STKINTRLDSINFFIQNP-ILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIR 399 I RLD++ N + I+K+L PD+ + LSR+ RG K + Sbjct: 454 KENIIERLDAVEELAFNSNSQVQAIRKMLYRLPDLEKGLSRIYYQRGFYKAASA------ 507 Query: 400 SGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADA 459 F KN + A+ L++L Q L ++SS++ L F + + D Sbjct: 508 --------FSKNSYSC-FKSAL--LRRLIQQL-PSISSIIDHFLGMFDQKEAENNNKVDM 555 Query: 460 SLD-------------------ETRSLRDQSKRIIASLQLKYAE---ETKIKNLKIKHNN 497 D E R L+ + + E + NL+ Sbjct: 556 FKDIDNFDLSEEPNDVDYELAQEIRELKMSILMVRTEMDFHLQELRDYLEYPNLEFSIWG 615 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLE----LIDLENRITNATNS 553 N+ + IEV+ + +I + +L RF T + LI+L + N T S Sbjct: 616 NVKFCIEVSKGCKKI-------PPDWIKLSSTRSLFRFHTPKIQSLLIELSSHEENLTIS 668 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 + I + + I E L N + V+ +D I+ A ++ + Y RP + + Sbjct: 669 SEKI----YRSFLSRISEHYNELRNVTTVLGTLDCLISFARISSQSGYTRPEFSDK-ELL 723 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + + RHP++E S K F+ N LS + + L+TGPNMGGKS+F++Q AL Sbjct: 724 IHESRHPMIELL----SDKSFVPNHIHLS----SDGVRCLLITGPNMGGKSSFVKQLALS 775 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 IMAQ G +VPA A + I D + R+GS+DNL+ STFMVEM+ET +L++AT +S V Sbjct: 776 AIMAQSGCFVPAKSALLPIFDSILIRMGSSDNLSVNMSTFMVEMLETKEVLSKATEKSMV 835 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK----SLKRFHNAT 789 I+DE+GRGT+T+DG +I++A + YL++ + L THF L L + L+ FH Sbjct: 836 IIDELGRGTSTIDGEAISYAVLHYLNQYIKSYLLFVTHFPSLGILERRFEGQLRCFHMGY 895 Query: 790 LQVSDSNE-----GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYH 844 L+ + E I FL+K++PG+A SYG+ V ++AG+P +++SRA +I + +EK + Sbjct: 896 LKSKEDFETSVSQSISFLYKLVPGVASKSYGLNVARMAGIPFSILSRATEISENYEKKHR 955 Query: 845 HNQKDM 850 + +K++ Sbjct: 956 NARKNV 961 >gi|21951838|gb|AAM82365.1| mismatch repair protein MutS [Salmonella enterica] Length = 376 Score = 264 bits (674), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 138/348 (39%), Positives = 209/348 (60%), Gaps = 15/348 (4%) Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + A Sbjct: 1 YNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPELKEYEDKVLTSKGKA 54 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L +E + ++ L + ++ L ++ +A +D+ + LA A NY P + + Sbjct: 55 LALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLAERAWTLNYTCPTFTDKPGIRI 114 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 115 TEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTALIA 165 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++A +GSYVPA + IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V+ Sbjct: 166 LLAWIGSYVPAQHVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVL 225 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 226 MDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALE 285 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 286 HGDTIAFMHSVQNGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 333 >gi|123479127|ref|XP_001322723.1| MutS domain III family protein [Trichomonas vaginalis G3] gi|121905574|gb|EAY10500.1| MutS domain III family protein [Trichomonas vaginalis G3] Length = 1057 Score = 263 bits (673), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 228/873 (26%), Positives = 408/873 (46%), Gaps = 82/873 (9%) Query: 3 KEFSSPQKLYSEQIDLEENLKSS-TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALL 61 KE P +Y + E +K + TP +Q+ +IK N D++V R G FYE+F DA+ Sbjct: 171 KEGYDPSTVY-----IPETVKETFTPFQKQFWDIKENNFDAIVMIRKGKFYEMFSVDAIF 225 Query: 62 ASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEA---K 118 A L + LT RGK PMCGVP + + K+I G R+ EQ+E+ ++ K Sbjct: 226 ARDVLKLHLTYRGKE-----PMCGVPEKAFSEWAIKIINAGKRVCKVEQMETAIDQANRK 280 Query: 119 KRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAV-ARIRTEWAIAWIDISTGIFKI 177 +G + ++R +V++ + GT+ + ++L + +YL+++ + R + +D STG F + Sbjct: 281 GKGAEKAIQRKLVQVYSLGTIDDFEMLESSQPSYLLSIRSSSRQTAGVCLVDCSTGTFHL 340 Query: 178 STSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQP--NVFFDHSISES 235 N D L ++R +P E+I+S +S + GNVA + +D +++ + Sbjct: 341 GAVNEDDLADTLIRFEPVEVIYSANNISPEHLAIIKHYCGNVATRAKTGSETWDSTLAMN 400 Query: 236 ---RIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQ----MVNKPTIGYPEREDIQS 288 +IA + N+ D+ + Q A ++Y+ + + +++ + S Sbjct: 401 TILKIAKWDNVP--DSLENVHQDAIAALGGCVAYLNEHKIAESLLSLKRFKTLDEAGSSS 458 Query: 289 TLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRL 348 L +DS+A +NL+I+ G L+ +D+ T G R I PL +I R Sbjct: 459 FLSLDSSALTNLQII----GKDPHCLINILDHCTTPFGRRRLRFWIMHPLRSINQIEERQ 514 Query: 349 DSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF 408 ++ ++ N + K LK+ PD+ R LSR+ + + V D + + F Sbjct: 515 KAVEELMKPDF--NTLSKELKTIPDLERMLSRVYSNKCS---VKVFIDCLGALKKCCQFF 569 Query: 409 LKNDLPEELRGAVEK---LKKLPQSLEKTLSSMLSDDLPT-----------FKRDGGFLR 454 K + G V+ +P K+L+ + D L F G + Sbjct: 570 TK------IEGTVKSPLLANVVPPGKGKSLAKQIDDILAELEVEKSIQSNEFIVKKGVFK 623 Query: 455 DGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLK 514 D D +E S+ D I+ ++ E K+L + + + +++ S L Sbjct: 624 DIDDID-EEVSSIEDDLNDILRDIK----REVGCKDLSYVNMQSEKFQVQIPVKYCSDLP 678 Query: 515 KDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSE 574 D++I ++ R+ T E+ + ++ N + S + + + S Sbjct: 679 ------DKYILMSQTKSVRRYHTPEIKEKLKQLDIVENERQKLRSGSQKRFIDEFAKNSP 732 Query: 575 SLDNASQVIAIIDISIALAILAKEQN----YCRPIIDNSTNFIVKDGRHPIVEKTLK-QQ 629 D+ IA ID I+LA+ + C+PI F+ KD + L+ ++ Sbjct: 733 IWDSIVDAIADIDCLISLAMTSIRWRASGVLCKPI------FVQKDSPEAHGQAILQVEK 786 Query: 630 SSKPFIANDCDLSCPNDKNSGK--LWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASY 687 + P I PND + + L+TGPN GKST+ R + +I+AQ+G +PA Sbjct: 787 MNHPCIIG---TPIPNDIDIHDRFVLLITGPNASGKSTYARMCCVSIILAQIGCMLPAVS 843 Query: 688 AHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDG 747 A + D++F+R+G++D + +G+STF VE ETA ++ AT+ SFV+LDE+GRGT+TLDG Sbjct: 844 AKMTCYDQIFTRIGASDRIFNGQSTFAVESSETARLMKHATSDSFVVLDELGRGTSTLDG 903 Query: 748 LSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIP 807 ++IA + +++ +C + TH+H L + + NA+++ SN + + +I Sbjct: 904 IAIASSVLDFFINKVKCPLVFCTHYHVLAEEFEQFPMVRNASMKYEISNGNLTLAYTLID 963 Query: 808 GIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + S+G +V K+ GLP + A + FE Sbjct: 964 KMCPSSFGCRVAKICGLPADLTEEAQKVADDFE 996 >gi|146418998|ref|XP_001485464.1| hypothetical protein PGUG_03193 [Meyerozyma guilliermondii ATCC 6260] Length = 1198 Score = 263 bits (673), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 227/859 (26%), Positives = 405/859 (47%), Gaps = 86/859 (10%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 T +QY EIK + D++VF++ G FYEL+ +DA +A+ + + G+ ++ + G Sbjct: 306 TAFEKQYWEIKGVMWDTVVFFKKGKFYELYENDATIANSEFDLKIAGGGR---ANMKLAG 362 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGN----KSLVRRNVVRLVTPGTLTE 141 +P + ++ ++ I G+++A +Q ES L + RG + +++R + ++T GTLT+ Sbjct: 363 IPEMSFEYWAKEFISHGYKVAKVDQKESLLAKEMRGGGTKEEKIIKRELTGVLTGGTLTD 422 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTG---IFKISTSNH-DRLISDIMRIDPREI 197 +LS S Y +++ + + + ++D +T ++ N +L + + + P+E+ Sbjct: 423 LNMLSDDMSTYCLSIKQFDNWFGVVFVDTATSELNFYQFEDDNECTKLETLVTHVRPKEV 482 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPN-----------VFFDHSISESRI--ADYYNIT 244 I + LS K L T AQP+ F+D+ + ++ + YY+ T Sbjct: 483 ICEKHNLSSTATKILKYT------AQPSNQIWNTLNPNTEFWDYDTTLEKLVSSKYYDAT 536 Query: 245 TVDTFGSF----------SQVEKTAAAAAISYIKKTQM-VNKPTIG----YPEREDIQST 289 +D F ++ +Q +A +SY+K ++ N T+G Y + Sbjct: 537 DLDDFSNYPDALIAFKDKNQYAFSAFGGLLSYLKFLKLDHNIMTMGNIREYQITTRLAKN 596 Query: 290 LFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRL 348 + +D +NLEIL + GS + +L K ++ + + G R+ + +PL S+ IN RL Sbjct: 597 MILDGITLNNLEILTNSFDGSDKGTLFKLLNRAQSPFGKRMLKNWVLNPLMVSSDINDRL 656 Query: 349 DSINFFIQNPILINPI-QKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL 407 DS+ + + I I +K L PD+ R ++R + KD + +G L Sbjct: 657 DSVEYLMGEGAEIKDILEKSLLGLPDLERLIARTHSKNIKFKDFLKLIEGFEKVCGTLQ- 715 Query: 408 FLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRD------GADASL 461 +L + ++ + L K Q L S +++ F R L D G D S Sbjct: 716 ----NLKDFVKESCGSLYKYLQGFPTELKSCVNEWEDAFDRSEA-LNDVVVPATGVDESF 770 Query: 462 DETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKD 521 D + + + I+ KY +E + + K + Y IEV + ++ Sbjct: 771 DASSDRMKKLEDILNEHLRKYKKEYRSNEICYKDSGKEIYLIEVPNKVKNI-------PS 823 Query: 522 RFIHRQTMSNLTRFTTLELIDLENRITNATNS-ALLIELESFEILSNAIIEQSESLDNAS 580 + + S + RF + E+ L + + ++ E F + + + + Sbjct: 824 DWHQMGSTSKVKRFWSPEVKKLARELMEQRETHKMVCETLRFRMYER-FCKHYKVWKSTI 882 Query: 581 QVIAIIDISIALAILAKE--QNYCRP-IIDNSTNFI-VKDGRHPIVEKTLKQQSSKPFIA 636 V+A ID IAL ++ Q CRP ++ T I KD R+P +S FI Sbjct: 883 HVLANIDCIIALTKTSETLGQPSCRPQFVEADTGLIDFKDLRNPCF------VTSGEFIP 936 Query: 637 NDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKL 696 ND L + LLTG N GKST +R A+ V+M+Q+G +VPAS+A + VDK+ Sbjct: 937 NDVSLG----GDEAHFGLLTGANAAGKSTLMRTTAMAVVMSQIGCFVPASHARLTPVDKI 992 Query: 697 FSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIE 756 +R+G+ DN+ G+STF VE+ ET IL AT +S VILDE+GRG ++ DG +IA A + Sbjct: 993 MTRLGANDNILQGKSTFFVELSETKKILANATAKSLVILDELGRGGSSSDGFAIAEAVLH 1052 Query: 757 YLHETNRCRGLLATHFHELT---DLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHS 813 +L + G ATH+ L + ++ A + + ++ I FL+K+ G A S Sbjct: 1053 HLATHVQPLGFFATHYGSLVLSFEGHPQIRPLRMAIV-IDQNSRNITFLYKLEDGTAPGS 1111 Query: 814 YGIQVGKLAGLPNTVISRA 832 +G+ V + G+ + ++ +A Sbjct: 1112 FGMNVAAMCGISSEIVDQA 1130 >gi|190346907|gb|EDK39095.2| hypothetical protein PGUG_03193 [Meyerozyma guilliermondii ATCC 6260] Length = 1198 Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 227/859 (26%), Positives = 405/859 (47%), Gaps = 86/859 (10%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 T +QY EIK + D++VF++ G FYEL+ +DA +A+ + + G+ ++ + G Sbjct: 306 TAFEKQYWEIKGVMWDTVVFFKKGKFYELYENDATIANSEFDLKIAGGGR---ANMKLAG 362 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGN----KSLVRRNVVRLVTPGTLTE 141 +P + ++ ++ I G+++A +Q ES L + RG + +++R + ++T GTLT+ Sbjct: 363 IPEMSFEYWAKEFISHGYKVAKVDQKESLLAKEMRGGGTKEEKIIKRELTGVLTGGTLTD 422 Query: 142 DQLLSPTDSNYLMAVARIRTEWAIAWIDISTG---IFKISTSNH-DRLISDIMRIDPREI 197 +LS S Y +++ + + + ++D +T ++ N +L + + + P+E+ Sbjct: 423 LNMLSDDMSTYCLSIKQFDNWFGVVFVDTATSELNFYQFEDDNECTKLETLVTHVRPKEV 482 Query: 198 IFSEKELSHAEYKSLFETLGNVAVAQPN-----------VFFDHSISESRI--ADYYNIT 244 I + LS K L T AQP+ F+D+ + ++ + YY+ T Sbjct: 483 ICEKHNLSSTATKILKYT------AQPSNQIWNTLNPNTEFWDYDTTLEKLVSSKYYDAT 536 Query: 245 TVDTFGSF----------SQVEKTAAAAAISYIKKTQM-VNKPTIGYPEREDIQS----T 289 +D F ++ +Q +A +SY+K ++ N T+G I + Sbjct: 537 DLDDFSNYPDALIAFKDKNQYAFSAFGGLLSYLKFLKLDHNIMTMGNIREYQITTRSAKN 596 Query: 290 LFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRL 348 + +D +NLEIL + GS + +L K ++ + + G R+ + +PL S+ IN RL Sbjct: 597 MILDGITLNNLEILTNSFDGSDKGTLFKLLNRAQSPFGKRMLKNWVLNPLMVSSDINDRL 656 Query: 349 DSINFFIQNPILINPI-QKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL 407 DS+ + + I I +K L PD+ R ++R + KD + +G L Sbjct: 657 DSVEYLMGEGAEIKDILEKSLSGLPDLERLIARTHSKNIKFKDFLKLIEGFEKVCGTLQ- 715 Query: 408 FLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRD------GADASL 461 +L + ++ + L K Q L S +++ F R L D G D S Sbjct: 716 ----NLKDFVKESCGSLYKYLQGFPTELKSCVNEWEDAFDRSEA-LNDVVVPATGVDESF 770 Query: 462 DETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKD 521 D + + + I+ KY +E + + K + Y IEV + ++ Sbjct: 771 DASSDRMKKLEDILNEHLRKYKKEYRSNEICYKDSGKEIYLIEVPNKVKNI-------PS 823 Query: 522 RFIHRQTMSNLTRFTTLELIDLENRITNATNS-ALLIELESFEILSNAIIEQSESLDNAS 580 + + S + RF + E+ L + + ++ E F + + + + Sbjct: 824 DWHQMGSTSKVKRFWSPEVKKLARELMEQRETHKMVCETLRFRMYER-FCKHYKVWKSTI 882 Query: 581 QVIAIIDISIALAILAKE--QNYCRP-IIDNSTNFI-VKDGRHPIVEKTLKQQSSKPFIA 636 V+A ID IAL ++ Q CRP ++ T I KD R+P +S FI Sbjct: 883 HVLANIDCIIALTKTSETLGQPSCRPQFVEADTGLIDFKDLRNPCF------VTSGEFIP 936 Query: 637 NDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKL 696 ND L + LLTG N GKST +R A+ V+M+Q+G +VPAS+A + VDK+ Sbjct: 937 NDVSLG----GDEAHFGLLTGANAAGKSTLMRTTAMAVVMSQIGCFVPASHARLTPVDKI 992 Query: 697 FSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIE 756 +R+G+ DN+ G+STF VE+ ET IL AT +S VILDE+GRG ++ DG +IA A + Sbjct: 993 MTRLGANDNILQGKSTFFVELSETKKILANATAKSLVILDELGRGGSSSDGFAIAEAVLH 1052 Query: 757 YLHETNRCRGLLATHFHELT---DLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHS 813 +L + G ATH+ L + ++ A + + ++ I FL+K+ G A S Sbjct: 1053 HLATHVQPLGFFATHYGSLVLSFEGHPQIRPLRMAIV-IDQNSRNITFLYKLEDGTAPGS 1111 Query: 814 YGIQVGKLAGLPNTVISRA 832 +G+ V + G+ + ++ +A Sbjct: 1112 FGMNVAAMCGISSEIVDQA 1130 >gi|84784043|gb|ABC61986.1| MSH6-like protein [Trichomonas vaginalis] Length = 1070 Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 222/849 (26%), Positives = 398/849 (46%), Gaps = 76/849 (8%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP +Q+ +IK N D++V R G FYE+F DA+ A L + LT RGK PMCG Sbjct: 203 TPFQKQFWDIKENNFDAIVMIRKGKFYEMFSVDAIFARDVLKLHLTYRGKE-----PMCG 257 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEA---KKRGNKSLVRRNVVRLVTPGTLTED 142 VP + + K+I G R+ EQ+E+ ++ K +G + ++R +V++ + GT+ + Sbjct: 258 VPEKAFSEWAIKIINAGKRVCKVEQMETAIDQANRKGKGAEKAIQRKLVQVYSLGTIDDF 317 Query: 143 QLLSPTDSNYLMAV-ARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 ++L + +YL+++ + R + +D STG F + N D L ++R +P E+I+S Sbjct: 318 EMLESSQPSYLLSIRSSSRQTAGVCLVDCSTGTFHLGAVNEDDLADTLIRFEPVEVIYSA 377 Query: 202 KELSHAEYKSLFETLGNVAVAQP--NVFFDHSISES---RIADYYNITTVDTFGSFSQVE 256 +S + GNVA + +D +++ + +IA + N+ D+ + Q Sbjct: 378 NNISPEHLAIIKHYCGNVATRAKTGSETWDSTLAMNTILKIAKWDNVP--DSLENVHQDA 435 Query: 257 KTAAAAAISYIKKTQ----MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ 312 A ++Y+ + + +++ + S L +DS+A +NL+I+ G Sbjct: 436 IAALGGCVAYLNEHKIAESLLSLKRFKTLDEAGSSSFLSLDSSALTNLQII----GKDPH 491 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 L+ +D+ T G R I PL +I R ++ ++ N + K LK+ P Sbjct: 492 CLINILDHCTTPFGRRRLRFWIMHPLRSINQIEERQKAVEELMKPDF--NTLSKELKTIP 549 Query: 373 DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEK---LKKLPQ 429 D+ R LSR+ + + V D + + F K + G V+ +P Sbjct: 550 DLERMLSRVYSNKCS---VKVFIDCLGALKKCCQFFTK------IEGTVKSPLLANVVPP 600 Query: 430 SLEKTLSSMLSDDLPT-----------FKRDGGFLRDGADASLDETRSLRDQSKRIIASL 478 K+L+ + D L F G +D D +E S+ D I+ + Sbjct: 601 GKGKSLAKQIDDILAELEVEKSIQSNEFIVKKGVFKDIDDID-EEVSSIEDDLNDILRDI 659 Query: 479 QLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTL 538 + E K+L + + + +++ S L D++I ++ R+ T Sbjct: 660 K----REVGCKDLSYVNMQSEKFQVQIPVKYCSDLP------DKYILMSQTKSVRRYHTP 709 Query: 539 ELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKE 598 E+ + ++ N + S + + + S D+ IA ID I+LA+ + Sbjct: 710 EIKEKLKQLDIVENERQKLRSGSQKRFIDEFAKNSPIWDSIVDAIADIDCLISLAMTSIR 769 Query: 599 QN----YCRPIIDNSTNFIVKDGRHPIVEKTLK-QQSSKPFIANDCDLSCPNDKNSGK-- 651 C+PI F+ KD + L+ ++ + P I PND + Sbjct: 770 WRASGVLCKPI------FVQKDSPEAHGQAILQVEKMNHPCIIG---TPIPNDIDIHDRF 820 Query: 652 LWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRS 711 + L+TGPN GKST+ R + +I+AQ+G +PA A + D++F+R+G++D + +G+S Sbjct: 821 VLLITGPNASGKSTYARMCCVSIILAQIGCMLPAVSAKMTCYDQIFTRIGASDRIFNGQS 880 Query: 712 TFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATH 771 TF VE ETA ++ AT+ SFV+LDE+GRGT+TLDG++IA + +++ +C + TH Sbjct: 881 TFAVESSETARLMKHATSDSFVVLDELGRGTSTLDGIAIASSVLDFFINKVKCPLVFCTH 940 Query: 772 FHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISR 831 +H L + + NA+++ SN + + +I + S+G +V K+ GLP + Sbjct: 941 YHVLAEEFEQFPMVRNASMKYEISNGNLTLAYTLIDKMCPSSFGCRVAKICGLPADLTEE 1000 Query: 832 AYDILKTFE 840 A + FE Sbjct: 1001 AQKVADDFE 1009 >gi|313608847|gb|EFR84632.1| DNA mismatch repair protein MutS [Listeria monocytogenes FSL F2-208] Length = 344 Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 139/335 (41%), Positives = 208/335 (62%), Gaps = 18/335 (5%) Query: 574 ESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKP 633 E L ++ ++ ID + A ++++ ++ RP + + VK GRHP+VEK + QS Sbjct: 16 ERLQKLAKSVSEIDCLQSFADISEKNHFIRPTLSEDGSLHVKQGRHPVVEKVMGAQS--- 72 Query: 634 FIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIV 693 ++ANDCDL D+N ++ L+TGPNM GKST++RQ AL I AQ+G +VPA A + I Sbjct: 73 YVANDCDL----DRNR-EILLITGPNMSGKSTYMRQVALTAICAQVGCFVPAEEATLPIF 127 Query: 694 DKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWA 753 D++F+R+G+AD+L +G+STFMVEM+E + + AT S ++ DEIGRGTAT DG+++A A Sbjct: 128 DQIFTRIGAADDLIAGQSTFMVEMLEARNAIVHATKDSLILFDEIGRGTATYDGMALAQA 187 Query: 754 TIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHS 813 IEY+HE + L +TH+HELTDL K L+ N + + N ++FLHK+ G AD S Sbjct: 188 IIEYIHENVHAKTLFSTHYHELTDLEKELRGLQNIHVSAVEENGKVVFLHKIKEGPADKS 247 Query: 814 YGIQVGKLAGLPNTVISRAYDILKTFE----KLYHHNQKDMRLYYPEIQ-----TKESKN 864 YGI V +LA LP ++I RA IL+ E K+ N K + E+Q + K Sbjct: 248 YGIHVAELAELPKSLIERASRILEQLENDDKKMVITNDKQPEEIHEEVQLSMFPVEPEKK 307 Query: 865 NLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 SK KL E I +N+ +M+P+ A+ LY +++ Sbjct: 308 ASSKETKLLKE-IASMNIMQMTPMDAMNKLYELQS 341 >gi|255718761|ref|XP_002555661.1| KLTH0G14476p [Lachancea thermotolerans] gi|238937045|emb|CAR25224.1| KLTH0G14476p [Lachancea thermotolerans] Length = 1276 Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 237/875 (27%), Positives = 420/875 (48%), Gaps = 95/875 (10%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP +QY EIKS D +VF++ G F+EL+ DALL ++ + + G+ ++ + G Sbjct: 348 TPFEKQYWEIKSRMWDCIVFFKKGKFFELYEKDALLGNQLFDLKIAGGGR---ANMQLAG 404 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR-GNKSLVRRNVVRLVTPGTLTEDQL 144 +P + +++ + I+ G+++A +Q ES L + R GNK +V+R + ++T GTLT+ + Sbjct: 405 IPEMSFDYWAMQFIQHGYKVAKVDQRESMLAKEMREGNKGIVKRELQHVLTSGTLTDSGM 464 Query: 145 LSPTDSNYLMAVAR---------------IRTE---WAIAWIDISTGIFKI----STSNH 182 L + + +A+ +TE + +A+ID +TG ++ S Sbjct: 465 LQSDQATFCLAIKEEAGTYHDTENGTVEPSKTESKIFGVAFIDTATGEIELLEFEDDSEC 524 Query: 183 DRLISDIMRIDPREIIFSEKELSH---------AEYKSLFETLGNVA-VAQPNVFFDH-- 230 +L + + ++ P+EII + L + A+ +++F L V N FD Sbjct: 525 SKLDTLMSQVKPKEIIMEKNNLCNLAHKIVKFNAQPQAIFNYLKPVEEFYDFNKTFDELT 584 Query: 231 SISESRIADYYNITTVDT--FGSFSQVEKTAAAAAISYIKKTQ----MVNKPTIGYPERE 284 S AD + V T F +V +A +SY+K + M+ I Sbjct: 585 STETKYFADMEHWPAVLTHYFEKGKKVGFSAFGGLLSYLKWLKLDEAMITMGNIKEYNPI 644 Query: 285 DIQSTLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTK 343 Q++L +D NLEI + S +L K ++ +IT G R+ + + PL Sbjct: 645 RSQNSLVLDGVTLQNLEIFCNSFDNSDRGTLFKLLNRAITPMGKRMLKKWVVHPLLQKKD 704 Query: 344 INTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGIN 403 I RLDS++ + + ++ L PD+ R L+R+ G + KD + +G S I Sbjct: 705 IEMRLDSVDLLLTKIEIREVLEDKLSLLPDLERFLARVHSGALKIKDFNRVIEGFES-IT 763 Query: 404 ILNLFLKNDLPEELRGAVEK-LKKLPQSL-EKTLSSMLSDDLPTFKRDGGFLRD-GADAS 460 L L+N EL G+++ L ++P++L EK + + D DG + + G + Sbjct: 764 GLIAKLQN---FELTGSLQVFLNQIPEALSEKVEGWVGAFDRKKAVNDGVIIPERGVEPE 820 Query: 461 LDET-RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDL-- 517 D + + ++D + L+ +Y ++ K N++ K + Y IEV S+ + D Sbjct: 821 FDRSLQGIKDLEDELDGHLR-EYKKQFKCSNIQFKDSGKEIYTIEVPMSATKQIPSDWIQ 879 Query: 518 ----ESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL--IELESFEILSNAIIE 571 +S R+ + ++ L R + E ++ + + S L +L ++ ++ Sbjct: 880 MGANKSNKRY-YSPGVAKLAR-SMAEAREMHKSLEESLKSRLYKKFDLHYQDVWMPTLL- 936 Query: 572 QSESLDNASQVIAIIDISIALAILAKEQNY--CRP--------IIDNSTNFIV--KDGRH 619 +A +D ++LA ++ + CRP + N N V K+ RH Sbjct: 937 ----------AVARMDCILSLARASESLGFPCCRPSFVDEVDPVTGNKLNGFVNFKELRH 986 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P + S+K FI ND L ++S ++ LLTG N GKST LR + VIMAQ+ Sbjct: 987 PCF--NMGTTSTKDFIPNDISLG----RDSYQIGLLTGANAAGKSTVLRMTCIAVIMAQV 1040 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 G YVPA A + +DK+ +R+G+ DN+ G+STF VE+ ET IL+ ATN+S ++LDE+G Sbjct: 1041 GCYVPAEEATLSPIDKIMTRLGANDNIMQGKSTFFVELSETKKILDIATNRSLLVLDELG 1100 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH--NATLQVSDSNE 797 RG ++ DG +IA + + ++ + G ATH+ L K + + V + + Sbjct: 1101 RGGSSSDGFAIAESVLHHVATHIQSLGFFATHYGGLGLGFKHHPKVKPLKMNIMVDEKSR 1160 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 I FL+K++ G ++ S+G+ V + G+ ++ RA Sbjct: 1161 EITFLYKLVEGQSEGSFGMHVASMCGIAKEIVDRA 1195 >gi|21951832|gb|AAM82362.1| mismatch repair protein MutS [Salmonella enterica] gi|21951834|gb|AAM82363.1| mismatch repair protein MutS [Salmonella enterica] Length = 376 Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 138/348 (39%), Positives = 208/348 (59%), Gaps = 15/348 (4%) Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + A Sbjct: 1 YNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPELKEYEDKVLTSKGKA 54 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L +E + ++ L + ++ L ++ +A +D+ + LA A NY P + + Sbjct: 55 LALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLAERAWTLNYTCPTFTDKPGIRI 114 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 115 AEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTALIA 165 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V+ Sbjct: 166 LLAYIGSYVPAQNVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVL 225 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 226 MDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALE 285 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 286 HGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 333 >gi|195378902|ref|XP_002048220.1| GJ11467 [Drosophila virilis] gi|194155378|gb|EDW70562.1| GJ11467 [Drosophila virilis] Length = 1192 Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 252/947 (26%), Positives = 412/947 (43%), Gaps = 171/947 (18%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 E+ L +P +RQ+ +KS N D ++F+++G FYEL+ DA + LG T RG Sbjct: 254 EKFLNGLSPGVRQWWILKSDNFDCVLFFKVGKFYELYHGDADVGVNELGFTYM-RG---- 308 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNK-------SLVRRNVV 131 + G P + + LI G+++A EQ E+P +R + +V R + Sbjct: 309 -EFAHSGFPEISFDKMSSILIDRGYKVARVEQTETPDMMTERCKRIKATKFDKVVAREIC 367 Query: 132 RLVTPGT--LTEDQLLSPT-DSNYLMAV----ARIRTEWAIAWIDISTGIFKISTSNHD- 183 ++ GT + P NY++A+ A +++ I +ID S G F + + D Sbjct: 368 QITDRGTQVFGSQCAIGPNHQPNYMLAIVEQDAGTSSKYGICFIDTSIGDFHVGEFDDDK 427 Query: 184 ---RLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRI--- 237 RL++ I P ++ + LS + L LG + Q + S + Sbjct: 428 SCSRLLTLISHHMPVLLLHEKSALSSRTQQILRTVLGGILKEQLPSAGNQVCSAEKTLKL 487 Query: 238 -------------------------ADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQM 272 D+ +T D + ++ A I YI K ++ Sbjct: 488 LAERYYAGNGTEDNWPLVLRTMQSDTDHLGLTPADPY----KLALKALGQCIHYIAKCKL 543 Query: 273 VNK--PTIGY-----PEREDIQST------------LFIDSAARSNLEILRTLSGSREQS 313 K P Y P++E +T + +D+ SNL I+ E S Sbjct: 544 EPKVLPMARYQLYVPPDQEQEANTKQPLAATLRRSHMVLDATTLSNLRIV-----GEEHS 598 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL T+D+ T G RL + +P D + R ++I ++ P + ++ +L PD Sbjct: 599 LLSTLDHCCTKFGKRLLHHWLCAPSCDLIVLRERQEAIGELLRQPDELQQLRALLAPMPD 658 Query: 374 VPRSLSRL------KIGRGEPKDIAVI--------RDGIRSGINILNLFLKNDLPEELRG 419 R L+++ +I + E D I + +RS ++IL F Sbjct: 659 FERHLAQIHLFGSKRIAQTEHPDSRAILFEEKLYNKQKLRSFMSILKGF----------- 707 Query: 420 AVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRD------------------------ 455 E L KLP + T + L L +GG D Sbjct: 708 --ETLMKLPVMFQ-TCETKLMQRLTQLPPNGGSYPDLSKQLKFFENAFDHEAADKTGVIA 764 Query: 456 ---GADASLDETRS-LRDQSKRIIASLQLKYAEETKIKNLKIKH--NNNLGYFIEVTSSS 509 G DA DE + + D +R L++ E+ + ++ + ++ Y +EV S Sbjct: 765 PQPGVDADYDEVQQRIADVQER----LKIYLTEQERHFGCRVVYFGSDKKRYQLEVPESH 820 Query: 510 ASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL-IELESFEILSNA 568 A K + + ++ T T L+ + A N+ L + FE SN Sbjct: 821 AHKANKSYALEGQVKGKKAARRYTTAETKALLKDMQQAEEARNAVLKDLARRLFEKFSNH 880 Query: 569 IIEQSESLDNASQVIAIIDISIALAILAKEQ-NYCRPII---DNSTNFI-VKDGRHPIVE 623 + + +D +A +D+ ALA A++Q C P + + FI +++G HP Sbjct: 881 YQQWKQCID----CVATLDVLAALAEYARQQLVICVPELVSAQQAQPFIELEEGYHPCAN 936 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 + +I N L + L LLTGPNMGGKST +RQ L+VIMAQ+G+++ Sbjct: 937 PST-------YIPNGLQLGT---NSEAPLSLLTGPNMGGKSTLMRQVGLLVIMAQIGAHI 986 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA + +VD++F+R+G+ D++ +G STF+VE+ ET+ IL AT S V+LDE+GRGTA Sbjct: 987 PAVSCRLSLVDRIFTRLGAQDDILAGHSTFLVELNETSLILKHATCNSLVLLDELGRGTA 1046 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRF---HNATLQVSDSN---- 796 T DG +IA + + +L +CR L +TH+H L D + KR H A + ++ N Sbjct: 1047 TYDGTAIAASVVNFLANL-KCRTLFSTHYHNLIDFFHTDKRITLGHMACMVENEDNTDPT 1105 Query: 797 -EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 E + FL+K G SYG KLAG+P+ +I RAY++ K E + Sbjct: 1106 QETVTFLYKYTAGACPKSYGFNAAKLAGMPHGIIKRAYELSKKVEAI 1152 >gi|315046278|ref|XP_003172514.1| DNA mismatch repair protein mutS [Arthroderma gypseum CBS 118893] gi|311342900|gb|EFR02103.1| DNA mismatch repair protein mutS [Arthroderma gypseum CBS 118893] Length = 999 Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 157/426 (36%), Positives = 236/426 (55%), Gaps = 31/426 (7%) Query: 447 KRDGGFLRDGADASLDETRSLRDQSKRII--------------ASLQLKYAEETKIKNLK 492 K DG G D+ D +R + +I+ A L K + L Sbjct: 577 KGDGSKGASGPDSPSDTAWIMRPNASKILKNLHDALESLYTEKAVLTKKLQKALDTAQLS 636 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLT--RFTTLELIDLENRITNA 550 +K LG+ + + + A +KK LE D + R S+ + F L ++ + Sbjct: 637 LKWTPGLGHIVHIKGTKA--MKKSLE--DLGVTRTVSSSKSTRSFYLPSWTQLGAKLESM 692 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 + E F+ L +A+I L + V+ +D++ + A LAKEQ RPI++N Sbjct: 693 KQQIRVEEQHIFKGLRHAVILNLVKLRRNASVLDELDVACSFATLAKEQGMVRPIVNNGL 752 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 + + GRHP V+ +++Q + F++NDC + DK ++ L+TGPNM GKSTFLRQN Sbjct: 753 SHKIIGGRHPTVKLGVEEQG-RHFVSNDCFV---GDKE--RILLITGPNMAGKSTFLRQN 806 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI I+AQ+GSYVPA YA IG+VDK+FSR+G+AD+L +STFMVEM+ETASIL AT + Sbjct: 807 ALITILAQVGSYVPAEYAEIGLVDKIFSRIGAADDLFRDQSTFMVEMLETASILKHATPR 866 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 SFVI+DE+GRGT DG ++ +A + +LH N+ R L ATHFH L D++ + Sbjct: 867 SFVIMDEVGRGTTPEDGTAVGFACLHHLHNENKARTLFATHFHALADMTADFEHLGRYCT 926 Query: 791 QVSDSNEG-IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE----KLYHH 845 + + G F+HK+ PG+ S+ ++V LAGLP +VI A D+++ +L H Sbjct: 927 DLKEDASGSFSFIHKLRPGVNRQSHALKVAHLAGLPQSVIDVAKDVIQKMPAMETELGHQ 986 Query: 846 NQKDMR 851 ++D R Sbjct: 987 VEEDYR 992 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 103/397 (25%), Positives = 180/397 (45%), Gaps = 38/397 (9%) Query: 40 PDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLI 99 P+ ++ R+G+FYEL+F A + L + L R K G +PM G P + +++ L+ Sbjct: 90 PNCVLLTRVGNFYELYFHQAEEYASLLNLKLAYR-KTAGGPVPMAGFPYFQLDRFLKILV 148 Query: 100 K-IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAV-- 156 + + +AI E+ + AK + + R V R+VTPGTL +++ + +NYL+++ Sbjct: 149 QEMKKNVAISEEFANDAAAKAKSGGLMFDRRVARIVTPGTLIDEKFIDQYQNNYLLSIHV 208 Query: 157 -------------ARIRTEW---------AIAWIDISTGIFKISTSNHDRLISDIMRIDP 194 R + ++W+D+STG F ++ L S I RI Sbjct: 209 DPNLTSLQSSTDGQATRGQLHCLPESDIIGLSWLDLSTGDFLTQITSPQMLASAITRIGA 268 Query: 195 REIIFSE--KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYN----ITTVDT 248 REI+ + E +E ++L V QP +F + ++++ + T + Sbjct: 269 REILVDQCIAESLRSELEALV-----VQEHQPITYFKRPKTIQALSEWNSSFDSPMTSEA 323 Query: 249 FGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-S 307 F+ E +A + Y K + P R+ ++ ++ ID LEIL T Sbjct: 324 ASMFTPQEVSACHLVLEYAKTQMKETDVKLQPPRRKLVEDSMSIDRNCLRGLEILETARD 383 Query: 308 GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI 367 G SLL + + T +G RL ER+ +P IN RLD ++ +++ L I ++ Sbjct: 384 GFGRGSLLHAVRRTSTSSGARLLRERLTAPSASLGVINERLDLVSLLLEDEDLRENIMRL 443 Query: 368 LKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 LK S D R + + +GRG P D+ + I + I Sbjct: 444 LKRSYDTQRLVQKFSLGRGLPDDLICLSRAIHASKEI 480 >gi|255954341|ref|XP_002567923.1| Pc21g08840 [Penicillium chrysogenum Wisconsin 54-1255] gi|211589634|emb|CAP95781.1| Pc21g08840 [Penicillium chrysogenum Wisconsin 54-1255] Length = 1130 Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 250/902 (27%), Positives = 426/902 (47%), Gaps = 136/902 (15%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK---------- 75 TPM +Q IEIK N D+++ +G + F +DA A++ LGI GK Sbjct: 210 TPMEKQVIEIKRQNMDTVLVIEVGYKFRFFGEDARTAAKELGIVCIP-GKFRFDEHPSEA 268 Query: 76 HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLV 134 H+G+ +PVH + ++++L+ GH++ + QIE + L+A + R + L Sbjct: 269 HIGR-FASASIPVHRLHVHVKRLVTAGHKVGVVRQIETAALKAAGDNRNAPFVRKLTNLY 327 Query: 135 TPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDP 194 T GT +D + A A A ++ T N +R+ I+ + P Sbjct: 328 TKGTYIDD-----AEGLQGPAPAAGGASPATGYMLCMTETNAKGPGNDERVHVGIVAVQP 382 Query: 195 R--EIIFSEKELSHAEYKSLFET-LGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS 251 ++I+ + E +S ET L ++A + + + S + ++ + + + ++ FG Sbjct: 383 ATGDVIYDDFE--DGFMRSEIETRLLHIAPCEILIVGEMSRASEKLVQHLSGSKMNVFGD 440 Query: 252 FSQVE-----KTAAAAAISYI--------------KKTQMVN--KPTIGYPEREDIQSTL 290 ++E KT+AA A S++ + TQ V + +G PE+ I + Sbjct: 441 AVRLERAQRKKTSAAEAHSHVSGFYAGKMKATSTEEDTQAVKLLQNVLGLPEQVTICLSA 500 Query: 291 FIDS-------------------AARS----------NLEILRTLSG-SREQSLLKTIDY 320 I+ +ARS NLEI + + S SL T+D Sbjct: 501 MIEHMTEYGLQHVFDLTKYFQPFSARSHMLLNGNTLVNLEIYQNQTDLSTRGSLFWTLDR 560 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKIL----KSSPDVPR 376 + T G R+ + + PL D + R +++ I +P P++++ K D+ R Sbjct: 561 THTRFGQRMLRQWVGRPLLDKVCLQERTNAVEELI-DPARAIPVERVRGLLRKVKSDLER 619 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEE-------LRGAVEKLKKLPQ 429 SL R+ G+ E ++ + ++ I F P + + A+ L + Sbjct: 620 SLIRIYYGKCERPELLTVLQAMQM---IAMEFADIKSPTQTGFQSSLVSEAIASLPTIRA 676 Query: 430 SLEKTLSSM-----LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAE 484 S+ K L + ++D TF R+ + + L I S + ++E Sbjct: 677 SVVKFLDKINMHAARTNDKYTFFREAEETEEIGELKLQ------------IGSTEHGFSE 724 Query: 485 ETK-----IKNLKIKHNNNLG--YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTT 537 K I K++++ G Y IE+ ++S + LK+ S ++ ++RF T Sbjct: 725 HRKEAASTIGRGKVEYSTVSGIEYLIEIENNSPA-LKRVPAS---WVKVSGTKRVSRFHT 780 Query: 538 LELIDLENRITNATNSALLIEL-ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILA 596 E+I L R + AL ++++ L I Q +S + Q +A +D ++LA +A Sbjct: 781 PEVIQL-IRERDQYKEALAAACDQAYKTLLADIAAQYQSFRDCIQSLATLDCLLSLAEIA 839 Query: 597 KEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLT 656 ++ Y +P ++ GRHP+VE+ L + ++ ND +L + + L+T Sbjct: 840 QQPGYVKPEYTEEAGLHIEQGRHPMVEQLL----TDTYVPNDTNL----QHDGTRALLVT 891 Query: 657 GPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVE 716 GPNMGGKS+++RQ ALI IMAQ+GSYVPAS A +G++D +F+R+G+ DN+ +G STFMVE Sbjct: 892 GPNMGGKSSYVRQVALIAIMAQIGSYVPASSARLGLLDAVFTRMGAFDNMLAGESTFMVE 951 Query: 717 MIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELT 776 + ETA IL QAT +S VILDE+GRGT+T DG++IA A ++++ + + L TH+ L+ Sbjct: 952 LSETADILKQATPRSLVILDELGRGTSTHDGVAIAQAVLDHMVRSIQSLTLFITHYQHLS 1011 Query: 777 DLSKSLK---------RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNT 827 + S RF + D +E I FL++V G+A SYG+ V +LA LP Sbjct: 1012 RMVHSFPDKALRNVHMRFTETGNKDKDGDEEITFLYEVAEGVAHRSYGLNVARLANLPPA 1071 Query: 828 VI 829 VI Sbjct: 1072 VI 1073 >gi|225389114|ref|ZP_03758838.1| hypothetical protein CLOSTASPAR_02860 [Clostridium asparagiforme DSM 15981] gi|225044832|gb|EEG55078.1| hypothetical protein CLOSTASPAR_02860 [Clostridium asparagiforme DSM 15981] Length = 355 Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 142/349 (40%), Positives = 212/349 (60%), Gaps = 22/349 (6%) Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 F + + I Q + ++ IA D+ +L+ +A +NY +P I+ +K+GRHP+ Sbjct: 1 FCQVRDHIASQVVRIQKTAKSIAGTDVFCSLSTVASRRNYVKPAINEKGTISIKNGRHPV 60 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 VE+ ++ F+AND L D +L ++TGPNM GKST++RQ ALIV+MAQ+GS Sbjct: 61 VEQMMRDD---LFVANDTYL----DNGKNRLSVITGPNMAGKSTYMRQVALIVLMAQLGS 113 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA A IGI D++F+RVG++D+LASG+STFMVEM E A+IL AT S ++LDEIGRG Sbjct: 114 FVPADEADIGICDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATRNSLLVLDEIGRG 173 Query: 742 TATLDGLSIAWATIEYLHETN--RCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 T+T DGLSIAWA IE++ T + L ATH+HELT+L ++ N + V + + I Sbjct: 174 TSTFDGLSIAWAVIEHISSTRLLGAKTLFATHYHELTELEGTIAGVKNYCIAVKEQGDDI 233 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF-------------EKLYHHN 846 +FL K++ G AD SYGIQV KLAG+P +VI RA +I + E + Sbjct: 234 VFLRKIVRGGADKSYGIQVAKLAGVPESVILRAKEIAEELSNADITARAKEIAEVSANIA 293 Query: 847 QKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 Q+ E+ ++ + D ++++ L ++ M+P+ A+ TLY Sbjct: 294 QRKAVPRPDEVDMQQLTFFDTVKDDDIIKELSELEINSMTPVDAMNTLY 342 >gi|213404546|ref|XP_002173045.1| DNA mismatch repair protein mutS [Schizosaccharomyces japonicus yFS275] gi|212001092|gb|EEB06752.1| DNA mismatch repair protein mutS [Schizosaccharomyces japonicus yFS275] Length = 921 Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 147/351 (41%), Positives = 219/351 (62%), Gaps = 11/351 (3%) Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLES-KDRFIHRQTMSNLT-RFTTLELIDLENRI 547 N+ ++ + + YF+ + S + ++ K +++ +D + T+S + + LE Sbjct: 576 NVTLRRSPSKMYFVYIKSQNKALKSKFVKTFQDATVFNTTLSTANYHLPSWSCLGLEIEA 635 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607 T S L E ++ L +++Q S+ +++++ +DIS +LA LA E + RPI++ Sbjct: 636 TKTRISQL--EAQTLMDLQTDVLKQMSSIRESAKLLNELDISTSLASLALEGKWVRPIVN 693 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 NS V GRHPIVEK L QQ F ANDC + P+ ++WL+TGPNM GKSTFL Sbjct: 694 NSCVHKVIQGRHPIVEKAL-QQKMVSFTANDCYVGKPS-----RIWLITGPNMAGKSTFL 747 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQNALI I+AQMGS+VPAS+A IG++D++FSRVGSADNL+ +STFM EM+E+A IL A Sbjct: 748 RQNALIAILAQMGSFVPASFAEIGVIDQIFSRVGSADNLSQHKSTFMEEMMESAFILKNA 807 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 T +SFVI+DE+GRGT T +G++I + +E+L N+ R L ATH HEL L K K Sbjct: 808 TPRSFVIMDEVGRGTTTKEGIAIGYGCLEHLRTINKSRVLFATHSHELATLVKDEKEIEC 867 Query: 788 -ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILK 837 T + + ++ +F H+V G+ +S+G++V LAG+P I A ILK Sbjct: 868 YCTDLIVNEDDTFVFDHRVRKGVNRNSHGLRVAALAGVPLEAIKTAKSILK 918 Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 111/394 (28%), Positives = 191/394 (48%), Gaps = 37/394 (9%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E K+ P++R + PD ++ ++G FYEL+F A + L + +++R L Sbjct: 53 EPTKTLPPVLRGVRLQQERFPDCVLLTKVGGFYELYFQQAEEVAPLLNLRVSQRRTSL-M 111 Query: 80 DIPMCGVPVHTANHYIQKLIK-IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + M G P + Y++ L++ + +A+ E+I P +L R V R+++PGT Sbjct: 112 PVSMAGFPAAKLDRYLKILVQDMNLCVALSEEI--PKAPDDFSTSNLYNRVVTRVISPGT 169 Query: 139 LTEDQLLSPTDSNYLMAVA--------RIRTEWAIAWIDISTGIFKISTSNHDRLISDIM 190 L ++ +SP +SN+++++A + T + W+D+STG F + S+ L DI Sbjct: 170 LIDESFISPGESNFILSIATDESLGDIQPETLVGLTWLDLSTGEFYVKDSSVQELAGDIE 229 Query: 191 RIDPREII----FSEKE-----LSHAEYKSLFETLGNVAVAQPNV---FFDHSISESRIA 238 RI PRE++ F +++ S K L+ + + V + N F D +S Sbjct: 230 RISPREVLLDTRFKDEKARDLLFSDVNTKGLYFSYTDPEVWEINQWRKFLDRPLS----- 284 Query: 239 DYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARS 298 +D VE + + + Y+ M +K TI +P R + + I + A Sbjct: 285 -------IDFLEDLKPVELQSGSHLLQYVSNRLMNSKTTIQHPIRYSPRENMVIGACALR 337 Query: 299 NLEILRTLSGSREQ-SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQN 357 +LEI + R Q +LL I+ ++T +G RL +R+ SP T+ IN RLD + F+QN Sbjct: 338 SLEIRHSFQEGRIQGTLLHAINRTVTHSGARLLVQRLCSPSTNVRVINERLDLVEAFVQN 397 Query: 358 PILINPIQKILKSSPDVPRSLSRLKIGRGEPKDI 391 P I ++LK + D R L R +GRG +D Sbjct: 398 PSARIQITELLKKTSDSERLLQRSVLGRGSAQDF 431 >gi|21951820|gb|AAM82356.1| mismatch repair protein MutS [Salmonella enterica] gi|21951822|gb|AAM82357.1| mismatch repair protein MutS [Salmonella enterica] gi|21951824|gb|AAM82358.1| mismatch repair protein MutS [Salmonella enterica] gi|21951826|gb|AAM82359.1| mismatch repair protein MutS [Salmonella enterica] gi|21951844|gb|AAM82368.1| mismatch repair protein MutS [Salmonella enterica] gi|21951846|gb|AAM82369.1| mismatch repair protein MutS [Salmonella enterica] Length = 376 Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 138/348 (39%), Positives = 208/348 (59%), Gaps = 15/348 (4%) Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + A Sbjct: 1 YNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPELKEYEDKVLTSKGKA 54 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L +E + ++ L + ++ L ++ +A +D+ + LA A NY P + + Sbjct: 55 LALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLAERAWTLNYTCPTFTDKPGIRI 114 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 115 TEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTALIA 165 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V+ Sbjct: 166 LLAYIGSYVPAQNVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVL 225 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 226 MDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALE 285 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 286 HGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 333 >gi|328863363|gb|EGG12463.1| hypothetical protein MELLADRAFT_46541 [Melampsora larici-populina 98AG31] Length = 915 Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 240/879 (27%), Positives = 416/879 (47%), Gaps = 105/879 (11%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP Q+ EIK + D+++F++ G F EL+ DA++ R + +TKR K + M G Sbjct: 2 TPFETQFWEIKQRHFDTVLFFQKGKFSELYEGDAMIGHREFDLKITKRVK-----MSMVG 56 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR-------------------GNKSLV 126 VP + + +I K + G+++ +Q E+ L A+ R G K +V Sbjct: 57 VPETSVDFWIAKFLAKGYKVCKVDQCETALGAEMRNKGSLPSSKSAKSQPKPKPGAKEIV 116 Query: 127 RRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTE-----WAIAWIDISTGIFKIS--- 178 RR + +VT GT+ + +L+ + LMA+ E + + +D ST F +S Sbjct: 117 RRELRSVVTSGTIVDGNILTDDAATCLMAIKETIGESGLPIFGVVILDASTAEFNLSYFD 176 Query: 179 -TSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVA-------VAQPNVFFDH 230 ++N L + + R P+EI+ + L+ S L N+A + + N F Sbjct: 177 DSANRTHLETIMSRFRPKEIVHEKSGLT----TSTIRVLKNIASSDCTWTILKSNEFLQI 232 Query: 231 SISESRIADYY---NITTVDTFGSFSQVEKT--AAAAAISYIKK----TQMVNKPTIGYP 281 ++++ + N + +F +T A + Y+ + ++++ + Sbjct: 233 DECMEKLSELFGEVNKPIPEAISAFHSKPETMMALGGLLWYLGQLNLDKELLSCDNVKVL 292 Query: 282 EREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDS 341 + T+ +D S+LE+L+ G + LLK ++ IT G RLF + SPL + Sbjct: 293 DVFRPTETMQLDGKTISDLELLQGDLG-EDSRLLKLLNRCITPFGKRLFRHWLCSPLQSA 351 Query: 342 TKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKD-IAVIRD--GI 398 + I RLDS+ + I++P ++ L PD+ R +SR+ G K+ + V++ I Sbjct: 352 SAIEMRLDSVTYLIEHPDFVDQFG-TLTGLPDLERLISRIHAGSCTVKNFLKVLKSFSKI 410 Query: 399 RSGINILNLFLKNDLP---EELRGAVEKLKKLPQSLEK--TLSSMLSDDLPTFKRDGGF- 452 ++ + L + +D P EEL V + +L +E+ TL D LP +D + Sbjct: 411 QTTLETLKTTIGDDPPKILEELIKKVPDVAQLIIDIEEMFTLDEEKKDLLPLEGKDELYD 470 Query: 453 ----LRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSS 508 A+ SLD+ + +K+++ S + Y K++ IK Y I+V Sbjct: 471 AAIEEEREAEGSLDDEL---EAAKKLLKSKDVVY------KHIGIKDI----YQIQVPGK 517 Query: 509 SASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNA 568 +++ + + R+ + + L ++ A L+ F + A Sbjct: 518 --------IKAPSNWTKMSGTKDCARYYSPQSAQLVKKLKQAREKKT-SALKDFHLRVFA 568 Query: 569 IIEQS-ESLDNASQVIAIID--ISIALAILAKEQNYCRP-IID-NSTNFIVKDGRHPIVE 623 + +QS + +A ID IS+A A +A + CRP I+D + RHP Sbjct: 569 LFDQSYPDWLLTVKTVAEIDCLISLAQASMAIGEPSCRPEILDLPQAELGFESLRHPCA- 627 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 + FIAND + + ++ LLTGPNM GKST LR + VIMAQ+G YV Sbjct: 628 ---VGRDESDFIANDVIVG----GDECRMILLTGPNMAGKSTLLRMTCVAVIMAQLGCYV 680 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA+ A I VD++ +R+G++D++ + STF VEM + IL++AT +S +ILDE+GRGT+ Sbjct: 681 PATSARISPVDRICTRMGASDHIFAHASTFKVEMDDAKKILSEATPKSLMILDELGRGTS 740 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL--QVSDSNEGIIF 801 T DG +IA+A + L C G ATH+ L + + + +V + ++F Sbjct: 741 TFDGHAIAFAVLHRLATHCSCLGFFATHYSALNEDFAHHPNIASKYMLTKVDEETREVLF 800 Query: 802 LHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 L+K+ G++ SYG V K+ G+P+ ++ RA I + FE Sbjct: 801 LYKLTNGVSPKSYGPHVAKMGGIPDEIVKRAIMISEEFE 839 >gi|195126507|ref|XP_002007712.1| GI12236 [Drosophila mojavensis] gi|193919321|gb|EDW18188.1| GI12236 [Drosophila mojavensis] Length = 1189 Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 242/945 (25%), Positives = 411/945 (43%), Gaps = 167/945 (17%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 E+ L + +P MRQ+ +K+ N D ++F+++G FYEL+ DA + LG T ++ Sbjct: 251 EKFLNTLSPAMRQWWVLKADNFDCVLFFKVGKFYELYHGDADVGVNELGFT------YMR 304 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNK-------SLVRRNVV 131 + G P + + L+ G+++A EQ E+P +R + +V R + Sbjct: 305 GEFAHSGFPEISFDKMSSILVDRGYKVARVEQTETPDMMTERCKRIKSTKYDKVVAREIC 364 Query: 132 RLVTPGT--LTEDQLLSPT-DSNYLMAVAR----IRTEWAIAWIDISTGIFKISTSNHD- 183 ++ GT + P NY++A+ +++ I +ID S G F + + D Sbjct: 365 QITDRGTQVFGSQCAIGPNHQPNYMLAIVEQDEGTSSKYGICFIDTSIGDFHVGEFDDDK 424 Query: 184 ---RLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRIA- 238 RL++ I P ++ + LS + L LG + Q P +E + Sbjct: 425 SCSRLLTLISHNMPVLLLHEKAALSSRTQQILRTVLGGIQKEQLPGAGSQLCSAEKTLKL 484 Query: 239 --------------------------DYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQM 272 D+ +T D + ++ A I YI K ++ Sbjct: 485 LAERYYAGTGNEDNWPLVLRTMQSDMDHLGLTPADPY----KLALKALGQCIHYIAKCKL 540 Query: 273 VNK--PTIGY----PEREDIQST--------------LFIDSAARSNLEILRTLSGSREQ 312 K P Y P E + T + +D+ SNL I+ E Sbjct: 541 EPKVLPMARYQLYVPPDEQQEETARPKLTSTPLQRSHMVLDATTLSNLRIV-----GEEH 595 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 SL T+D+ T G RL + +P D T + R ++I ++ P + ++ +L P Sbjct: 596 SLQSTLDHCCTKFGKRLLHHWLCAPSCDLTVLRERQEAIGELLRQPDELQQLRALLAPMP 655 Query: 373 DVPRSLSRLK------IGRGEPKDIAVI--------RDGIRSGINILNLFLKNDLPEELR 418 D R L+++ IG+ E D I + +RS ++IL F Sbjct: 656 DFERHLAQIHLFGNKYIGQTEHPDSRAILFEEKLYNKQKLRSFMSILKGF---------- 705 Query: 419 GAVEKLKKLPQSLEKTLSSML---------SDDLPTFKRDGGFLRD-------------- 455 E L +LP+ ++ S++L + P + F + Sbjct: 706 ---ETLMQLPEMFQRCESTLLRRLTQLSANGGNYPDLSKQLKFFENAFDHEAAAKAGVVA 762 Query: 456 ---GADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH--NNNLGYFIEVTSSSA 510 G DA DE ++ + + LQ E+ + ++ + ++ Y +EV + A Sbjct: 763 PQPGMDADYDE---VQQRIAEVEERLQAYLKEQERHFGCRVTYFGSDKKRYQLEVPETHA 819 Query: 511 SVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL-IELESFEILSNAI 569 K + + ++ T ++ + +A N+ L + FE SN Sbjct: 820 HKANKSYALEGQVKGKKPARRYITTETKAMLKDMQQAEDARNAVLKDLARRLFEKFSNHY 879 Query: 570 IEQSESLDNASQVIAIIDISIALAILAKEQ-NYCRP--IIDNSTNFI-VKDGRHPIVEKT 625 + + +D +A +D+ LA A++Q C P + + FI +++G HP + Sbjct: 880 EQWKQCID----CVATLDVLAGLAEYARQQLVICVPELVSGQAQPFIELEEGYHPCANPS 935 Query: 626 LKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPA 685 +I N L + L LLTGPNMGGKST +RQ L+VIMAQ+G+++PA Sbjct: 936 T-------YIPNGLQLGT---ETEAPLSLLTGPNMGGKSTLMRQLGLLVIMAQIGAHIPA 985 Query: 686 SYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATL 745 + + +VD++F+R+G+ D++ +G STF+VE+ ET+ IL AT S V+LDE+GRGTAT Sbjct: 986 ASCRLSLVDRIFTRLGAQDDILAGHSTFLVELNETSLILKHATPNSLVLLDELGRGTATY 1045 Query: 746 DGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRF---HNATLQVSDSN-----E 797 DG +IA + + +L +CR L +TH+H L D KR H A + ++ N E Sbjct: 1046 DGTAIAASVVNFLANL-KCRTLFSTHYHNLIDFFHMDKRITLGHMACMVENEDNADPTQE 1104 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + FL+K G SYG KLAG+P+ +I RAY++ K E + Sbjct: 1105 TVTFLYKYTAGACPKSYGFNAAKLAGMPHGIIKRAYELSKKVEAI 1149 >gi|33149637|gb|AAP96899.1| MutS protein [Salmonella enterica] Length = 366 Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 138/348 (39%), Positives = 208/348 (59%), Gaps = 15/348 (4%) Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + A Sbjct: 1 YNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPELKEYEDKVLTSKGKA 54 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L +E + ++ L + ++ L ++ +A +D+ + LA A NY P + + Sbjct: 55 LALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLAERAWTLNYTCPTFTDKPGIRI 114 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 115 TEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTALIA 165 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V+ Sbjct: 166 LLAYIGSYVPAQNVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVL 225 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 226 MDEIGRGTSTYDGLSLAWACTENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALE 285 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 286 HGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 333 >gi|302678711|ref|XP_003029038.1| hypothetical protein SCHCODRAFT_258263 [Schizophyllum commune H4-8] gi|300102727|gb|EFI94135.1| hypothetical protein SCHCODRAFT_258263 [Schizophyllum commune H4-8] Length = 1206 Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 248/913 (27%), Positives = 417/913 (45%), Gaps = 130/913 (14%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TP RQ+ EIK + D+++F++ G FYEL+ DDA + + + +T R K + Sbjct: 284 KEFTPFERQFWEIKQNHYDTVLFFQKGKFYELYEDDARIGHQEFDLKITSRVK-----MS 338 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR---------------GNKSLVR 127 M GVP + + + K + G+++ +Q E+ L A+ R +V+ Sbjct: 339 MVGVPEMSFDFWAAKFLGKGYKVGRVDQSETALGAEMRLAADKKGKAKSSEDKAKDKIVQ 398 Query: 128 RNVVRLVTPGTLTEDQLLSPTDSNYLMAVARI-----RTEWAIAWIDISTGIFKISTSN- 181 R + ++ T GTL + ++L+ + + +A+ ++ + I +D +T F +S Sbjct: 399 RELNKVYTNGTLVDPEMLTDEQAGHCVAIIEDNDRGDQSTFGICVLDCATSQFNMSHFTD 458 Query: 182 ---HDRLISDIMRIDPREIIFSE---------------------------KELSHAEYKS 211 H +L + + ++ P+EI+ + +++ Y Sbjct: 459 DVCHTKLETMMRQLRPKEILVKKSGPGALSVTSTRLLKNILPSQCTWTNLRDVEGFTYPD 518 Query: 212 LFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKK-- 269 E L + Q + D + E+ ++ + SQ A + I Y+++ Sbjct: 519 TIEELRKLYPDQDDAMDDGGLPETVPQSIRDV-------AHSQQAMEALGSMIWYLRQLN 571 Query: 270 --TQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGG 327 +++ + L +D ++LE+L G+ E SLLK + IT G Sbjct: 572 IDKDILSMKNFNVYDPMKRGEGLVLDGQTLAHLEVLMNNEGTDEGSLLKLLSRCITPFGK 631 Query: 328 RLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGE 387 RLF + PL + + I+ RLD++ + +P + + K PD+ R ++R+ + Sbjct: 632 RLFRIWLCMPLREISSIDDRLDAVEDILNHPSFESQFADVAKGLPDLERIVARIHAKSCK 691 Query: 388 PKDIAVIRDGIRS---GINILN----LFLKNDLPEELRGA---VEKLKKLPQSLEKTLSS 437 KD + + G+N L F + LRGA V +K++ + E+ S Sbjct: 692 IKDFLKVLSSFKKLSRGMNALADTAAEFESKTISGLLRGAPDVVPNIKQIEEMFERPASE 751 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASL--QLKYAEETKIKNLKIKH 495 +++L +G DA DE + + K + SL QLK E+ +L H Sbjct: 752 KEAEELVPM--------EGKDAVYDEVIA---EIKALEKSLNRQLKKYEDVVGGDLSYWH 800 Query: 496 N---NNLGYFIEVTSSSASVLKK-----DLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 + N Y +E +S ++ + ++K R++ + + ENR Sbjct: 801 SATGNKDIYLVETKASQKNIPRDWTKHGGTKAKTRYVVPALQPEIRKLKEAR----ENRK 856 Query: 548 TN-AT-NSALLIELESFEILSNAIIEQSESLDNASQVIAIID--ISIALAILAKEQNYCR 603 T AT S L E + L II +V A +D S+A + A + CR Sbjct: 857 TAIATFKSRLYAEFDVDRPLWLKII----------RVFAELDCLFSLAKSSAAIGEPSCR 906 Query: 604 P-IIDNSTNFI-VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 P +++ ++F+ ++ RHP TL Q + FI ND L GK+ LLTGPNM Sbjct: 907 PEFVESESSFMDFQELRHP----TLSLQKVEEFIPNDIRLGG----EVGKIALLTGPNMA 958 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKST +R A VIMAQ+G VPA+ A + VD + +R+G+ DN+ S STF VE+ E Sbjct: 959 GKSTCMRMTATGVIMAQLGMRVPATSARLTPVDSILTRMGAYDNMFSNASTFKVELDECC 1018 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTD---L 778 IL AT +S VILDE+GRGT+T DG++IA A + L ATH+ LTD Sbjct: 1019 KILRDATPRSLVILDELGRGTSTYDGMAIAGAVLHELATHTLPLTFFATHYGTLTDDFAY 1078 Query: 779 SKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKT 838 S++ H +TL V D + I+FL K++ G+A S+G V LAG+P V++RA + K Sbjct: 1079 HPSIRNMHMSTL-VDDEKKEIVFLFKLVEGVATSSFGTHVANLAGVPIEVVNRADVVSKA 1137 Query: 839 FEKLYHHNQKDMR 851 F + + +D + Sbjct: 1138 FAQQFQQRLQDKK 1150 >gi|326473228|gb|EGD97237.1| DNA mismatch repair protein Msh6 [Trichophyton tonsurans CBS 112818] Length = 1215 Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 233/872 (26%), Positives = 403/872 (46%), Gaps = 89/872 (10%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P +QY EIK D++VF++ G FYEL+ +DA + + + LT R ++ M G Sbjct: 316 SPFEKQYWEIKQKFWDTVVFFKKGKFYELYENDATIGHQLFDLKLTDR-----VNMRMVG 370 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL-----EAKKRGNK--------SLVRRNVVR 132 VP + +H+ + + G +IA +Q ES L E + +GNK +++R + Sbjct: 371 VPEMSLDHWANQFVAKGFKIARVDQSESALSKEMREREDKGNKMGKAQKEDKVIKRELAC 430 Query: 133 LVTPGTLTEDQLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFKISTSNHD----R 184 ++T GTL E ++ S Y +A+ + + + I+++D +TG F +S D R Sbjct: 431 VLTTGTLVEGSMIQGDMSTYCVAIKEVIIDGLPAFGISFVDTATGQFFLSQFVDDVDMTR 490 Query: 185 LISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA---QPNVFF---DHSISESRIA 238 + + + P+E++ + +S + L G + +P F D ++ E Sbjct: 491 FETFVAQTRPQELLLEKSVMSTKALRILKNNTGPTTLWNYLKPGKEFWEADVTVRELDAG 550 Query: 239 DYYNITTVDTFGSFSQVEK---------TAAAAAISYIKKTQMVNK-PTIG-YPEREDIQ 287 DY+ + ++ Q + +A A + Y++ ++ TIG + + I+ Sbjct: 551 DYFVSEDKNKASAWPQALQDARDKDLVMSAFGALLQYLEMLKIGRDLITIGNFTWYDPIK 610 Query: 288 --STLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKI 344 S+L +D NLEI T GS E +L ++ +T G RLF + + PL D KI Sbjct: 611 KASSLVLDGQTLINLEIFANTYDGSSEGTLFHLLNRCVTPFGKRLFKQWVCHPLMDIKKI 670 Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 N RLD++ + + L PD+ R +SR+ G + +D + +G Sbjct: 671 NARLDAVESLNADSTVREQFSSQLTKMPDLERLISRVHAGTCKAQDFVRVLEGFEQIEYT 730 Query: 405 LNLFLK----NDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADAS 460 + L + + L +L A+ L L Q E D + D +G + Sbjct: 731 MGLLKEAGSGHGLIGQLISAMPDLNGLLQFWETAF-----DRAKARESDILVPEEGIEEE 785 Query: 461 LDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESK 520 D ++ +Q + + + + +E K + K N Y +EV ++ K Sbjct: 786 FDASKKNIEQLEEELEQVLQRTRKELKCSTIVFKDNGKEIYQLEVPIKIKNIPKS----- 840 Query: 521 DRFIHRQTMSNLTRFTTLELIDLENRITNATNS-ALLIELESFEILSNAIIEQSESLDNA 579 + + R+ EL L ++ A + A +++ + + + S L A Sbjct: 841 --WDQMSATKQVKRYYFPELRALIRKLQEARETHAQVVKGVAGRFYARFDRDYSSWL-AA 897 Query: 580 SQVIAIIDISIALAILAKEQNY--CRPIIDNSTNFIV--KDGRHPIVEKTLKQQSSKPFI 635 ++IA +D I LA + + CRPI N ++ K+ RHP + + FI Sbjct: 898 VKIIAQLDCLIGLAKASTALGHPSCRPIFVNDERSVLDFKELRHPCMMPNVGD-----FI 952 Query: 636 ANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDK 695 ND L ++ + LLTG N GKST LR VIMAQ+G YVP YA + VD+ Sbjct: 953 PNDVKLG----GDTSNINLLTGANAAGKSTVLRMTCTAVIMAQIGCYVPCEYARLTPVDR 1008 Query: 696 LFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATI 755 + SR+G+ DN+ + +STF VE+ ET IL++AT +S VILDE+GRGT++ DG+++A A + Sbjct: 1009 IMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVL 1068 Query: 756 EYLHETNRCRGLLATHFHELT-------DLSKSLKRFHNATLQVSDSNEGIIFLHKVIPG 808 ++ G ATH+H L +++ R H V D+ + FL+K+ G Sbjct: 1069 HHVATHIGALGFFATHYHSLAAEFEGHPEIAARRMRIH-----VDDAERRVTFLYKLEDG 1123 Query: 809 IADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 +A+ S+G+ + G+P+ V+ A K +E Sbjct: 1124 VAEGSFGMHCASMCGIPSKVVEGAEIAAKQWE 1155 >gi|326477690|gb|EGE01700.1| DNA mismatch repair protein msh6 [Trichophyton equinum CBS 127.97] Length = 1215 Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 233/872 (26%), Positives = 403/872 (46%), Gaps = 89/872 (10%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P +QY EIK D++VF++ G FYEL+ +DA + + + LT R ++ M G Sbjct: 316 SPFEKQYWEIKQKFWDTVVFFKKGKFYELYENDATIGHQLFDLKLTDR-----VNMRMVG 370 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL-----EAKKRGNK--------SLVRRNVVR 132 VP + +H+ + + G +IA +Q ES L E + +GNK +++R + Sbjct: 371 VPEMSLDHWANQFVAKGFKIARVDQSESALSKEMREREDKGNKMGKAQKEDKVIKRELAC 430 Query: 133 LVTPGTLTEDQLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFKISTSNHD----R 184 ++T GTL E ++ S Y +A+ + + + I+++D +TG F +S D R Sbjct: 431 VLTTGTLVEGSMIQGDMSTYCVAIKEVIIDGLPAFGISFVDTATGQFFLSQFVDDVDMTR 490 Query: 185 LISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA---QPNVFF---DHSISESRIA 238 + + + P+E++ + +S + L G + +P F D ++ E Sbjct: 491 FETFVAQTRPQELLLEKSVMSTKALRILKNNTGPTTLWNYLKPGKEFWEADVTVRELDAG 550 Query: 239 DYYNITTVDTFGSFSQVEK---------TAAAAAISYIKKTQMVNK-PTIG-YPEREDIQ 287 DY+ + ++ Q + +A A + Y++ ++ TIG + + I+ Sbjct: 551 DYFVSEDKNKASAWPQALQDARDKDLVMSAFGALLQYLEMLKIGRDLITIGNFTWYDPIK 610 Query: 288 --STLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKI 344 S+L +D NLEI T GS E +L ++ +T G RLF + + PL D KI Sbjct: 611 KASSLVLDGQTLINLEIFANTYDGSSEGTLFHLLNRCVTPFGKRLFKQWVCHPLMDIKKI 670 Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 N RLD++ + + L PD+ R +SR+ G + +D + +G Sbjct: 671 NARLDAVESLNADSTVREQFSSQLTKMPDLERLISRVHAGTCKAQDFVRVLEGFEQIEYT 730 Query: 405 LNLFLK----NDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADAS 460 + L + + L +L A+ L L Q E D + D +G + Sbjct: 731 MGLLKEAGSGHGLIGQLISAMPDLNGLLQFWETAF-----DRAKARESDILVPEEGIEEE 785 Query: 461 LDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESK 520 D ++ +Q + + + + +E K + K N Y +EV ++ K Sbjct: 786 FDASKKNIEQLEEELEQVLQRTRKELKCSTIVFKDNGKEIYQLEVPIKIKNIPKS----- 840 Query: 521 DRFIHRQTMSNLTRFTTLELIDLENRITNATNS-ALLIELESFEILSNAIIEQSESLDNA 579 + + R+ EL L ++ A + A +++ + + + S L A Sbjct: 841 --WDQMSATKQVKRYYFPELRALIRKLQEARETHAQVVKGVAGRFYARFDRDYSSWL-AA 897 Query: 580 SQVIAIIDISIALAILAKEQNY--CRPIIDNSTNFIV--KDGRHPIVEKTLKQQSSKPFI 635 ++IA +D I LA + + CRPI N ++ K+ RHP + + FI Sbjct: 898 VKIIAQLDCLIGLAKASTALGHPSCRPIFVNDERSVLDFKELRHPCMMPNVGD-----FI 952 Query: 636 ANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDK 695 ND L ++ + LLTG N GKST LR VIMAQ+G YVP YA + VD+ Sbjct: 953 PNDVKLG----GDTSNINLLTGANAAGKSTVLRMTCTAVIMAQIGCYVPCEYARLTPVDR 1008 Query: 696 LFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATI 755 + SR+G+ DN+ + +STF VE+ ET IL++AT +S VILDE+GRGT++ DG+++A A + Sbjct: 1009 IMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVL 1068 Query: 756 EYLHETNRCRGLLATHFHELT-------DLSKSLKRFHNATLQVSDSNEGIIFLHKVIPG 808 ++ G ATH+H L +++ R H V D+ + FL+K+ G Sbjct: 1069 HHVATHIGALGFFATHYHSLAAEFEGHPEIAARRMRIH-----VDDAERRVTFLYKLEDG 1123 Query: 809 IADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 +A+ S+G+ + G+P+ V+ A K +E Sbjct: 1124 VAEGSFGMHCASMCGIPSKVVEGAEIAAKQWE 1155 >gi|33149555|gb|AAP96858.1| MutS protein [Salmonella enterica] Length = 366 Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 138/348 (39%), Positives = 208/348 (59%), Gaps = 15/348 (4%) Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + A Sbjct: 1 YNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPELKEYEDKVLTSKGKA 54 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L +E + ++ L + ++ L ++ +A +D+ + LA A NY P + + Sbjct: 55 LALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLAERAWTLNYTCPTFTDKPGIRI 114 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 115 TEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTALIA 165 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V+ Sbjct: 166 LLAYIGSYVPAQNVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVL 225 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 226 MDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALE 285 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 286 HGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 333 >gi|33149537|gb|AAP96849.1| MutS protein [Salmonella enterica] Length = 366 Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 138/348 (39%), Positives = 208/348 (59%), Gaps = 15/348 (4%) Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + A Sbjct: 1 YNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPELKEYEDKVLTSKGKA 54 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L +E + ++ L + ++ L ++ +A +D+ + LA A NY P + + Sbjct: 55 LALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLAERAWTLNYTCPTFTDKPGIRI 114 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 115 TEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTALIA 165 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V+ Sbjct: 166 LLAYIGSYVPAQNVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVL 225 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 226 MDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALE 285 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 286 HGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 333 >gi|302502899|ref|XP_003013410.1| hypothetical protein ARB_00228 [Arthroderma benhamiae CBS 112371] gi|291176974|gb|EFE32770.1| hypothetical protein ARB_00228 [Arthroderma benhamiae CBS 112371] Length = 1217 Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 233/872 (26%), Positives = 404/872 (46%), Gaps = 89/872 (10%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P +QY EIK D++VF++ G FYEL+ +DA + + + LT R ++ M G Sbjct: 318 SPFEKQYWEIKQKFWDTIVFFKKGKFYELYENDATIGHQLFDLKLTDR-----VNMRMVG 372 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL-----EAKKRGNK--------SLVRRNVVR 132 VP + +H+ + + G +IA +Q ES L E + +GNK +++R + Sbjct: 373 VPEMSLDHWANQFVAKGFKIARVDQSESALSKEMREREDKGNKMGKAQKEDKVIKRELAC 432 Query: 133 LVTPGTLTEDQLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFKISTSNHD----R 184 ++T GTL E ++ S Y +A+ + + I+++D +TG F +S D R Sbjct: 433 VLTTGTLVEGSMIQGDMSTYCVAIKEAIIDGLPAFGISFVDTATGQFFLSQFVDDVDMTR 492 Query: 185 LISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA---QPNVFF---DHSISESRIA 238 + + + P+E++ + +S + L G + +P F D ++ E Sbjct: 493 FETFVAQTRPQELLLEKSVMSTKALRILKNNTGPTTLWNYLKPGKEFWEADVTVRELDAG 552 Query: 239 DYYNITTVDTFGSFSQVEK---------TAAAAAISYIKKTQMVNK-PTIG-YPEREDIQ 287 DY+ + ++ Q + +A A + Y++ ++ TIG + + I+ Sbjct: 553 DYFVSEDKNHASAWPQALQDARDKDLVMSAFGALLQYLEMLKIGRDLITIGNFTWYDPIK 612 Query: 288 --STLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKI 344 S+L +D NLEI T GS E +L + ++ +T G RLF + + PL D KI Sbjct: 613 KASSLVLDGQTLINLEIFANTYDGSSEGTLFQLLNRCVTPFGKRLFKQWVCHPLMDIKKI 672 Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 N RLD++ + + L PD+ R +SR+ G + +D + +G Sbjct: 673 NARLDAVESLNADSTVREQFSSQLTKMPDLERLISRVHAGTCKAQDFVRVLEGFEQIEYT 732 Query: 405 LNLFLK----NDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADAS 460 + L + + L +L A+ L L + E + + + G + + DAS Sbjct: 733 MGLLKEAGSGHGLIGQLISAMPDLNGLLKFWETAFDRAKARESDILVPEEG-IEEEFDAS 791 Query: 461 LDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESK 520 L D+ ++++ + +E K + K N Y +EV ++ K Sbjct: 792 KKNIEQLEDELEQVLQ----RTRKELKCSTIVFKDNGKEIYQLEVPIKIKNIPKS----- 842 Query: 521 DRFIHRQTMSNLTRFTTLELIDLENRITNATNS-ALLIELESFEILSNAIIEQSESLDNA 579 + + R+ EL L ++ A + A +++ + + + S L A Sbjct: 843 --WDQMSATKQVKRYYFPELRALIRKLQEARETHAQVVKGVAGRFYARFDKDYSSWL-AA 899 Query: 580 SQVIAIID--ISIALAILAKEQNYCRPII--DNSTNFIVKDGRHPIVEKTLKQQSSKPFI 635 ++IA +D I +A A A CRPI D + ++ RHP + + FI Sbjct: 900 VKIIAQLDCLIGLAKASTALGHPSCRPIFVDDERSVLDFQELRHPCMMPNVGD-----FI 954 Query: 636 ANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDK 695 ND L ++ + LLTG N GKST LR VIMAQ+G YVP YA + VD+ Sbjct: 955 PNDVKLG----GDTSNINLLTGANAAGKSTVLRMTCTAVIMAQIGCYVPCEYARLTPVDR 1010 Query: 696 LFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATI 755 + SR+G+ DN+ + +STF VE+ ET IL++AT +S VILDE+GRGT++ DG+++A A + Sbjct: 1011 IMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVL 1070 Query: 756 EYLHETNRCRGLLATHFHELT-------DLSKSLKRFHNATLQVSDSNEGIIFLHKVIPG 808 ++ G ATH+H L +++ R H V D+ + FL+K+ G Sbjct: 1071 HHVATHIGALGFFATHYHSLAAEFEGHPEIAARRMRIH-----VDDAERRVTFLYKLEDG 1125 Query: 809 IADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 +A+ S+G+ + G+P+ V+ A K +E Sbjct: 1126 VAEGSFGMHCASMCGIPSKVVEGAEVAAKQWE 1157 >gi|33149503|gb|AAP96832.1| MutS protein [Salmonella enterica] gi|33149505|gb|AAP96833.1| MutS protein [Salmonella enterica] gi|33149507|gb|AAP96834.1| MutS protein [Salmonella enterica] gi|33149509|gb|AAP96835.1| MutS protein [Salmonella enterica] gi|33149511|gb|AAP96836.1| MutS protein [Salmonella enterica] gi|33149513|gb|AAP96837.1| MutS protein [Salmonella enterica] gi|33149515|gb|AAP96838.1| MutS protein [Salmonella enterica] gi|33149517|gb|AAP96839.1| MutS protein [Salmonella enterica] gi|33149519|gb|AAP96840.1| MutS protein [Salmonella enterica] gi|33149521|gb|AAP96841.1| MutS protein [Salmonella enterica] gi|33149525|gb|AAP96843.1| MutS protein [Salmonella enterica] gi|33149527|gb|AAP96844.1| MutS protein [Salmonella enterica] gi|33149529|gb|AAP96845.1| MutS protein [Salmonella enterica] gi|33149531|gb|AAP96846.1| MutS protein [Salmonella enterica] gi|33149533|gb|AAP96847.1| MutS protein [Salmonella enterica] gi|33149535|gb|AAP96848.1| MutS protein [Salmonella enterica] gi|33149539|gb|AAP96850.1| MutS protein [Salmonella enterica] gi|33149541|gb|AAP96851.1| MutS protein [Salmonella enterica] gi|33149543|gb|AAP96852.1| MutS protein [Salmonella enterica] gi|33149545|gb|AAP96853.1| MutS protein [Salmonella enterica subsp. enterica serovar Infantis str. SARB27] gi|33149547|gb|AAP96854.1| MutS protein [Salmonella enterica] gi|33149549|gb|AAP96855.1| MutS protein [Salmonella enterica] gi|33149551|gb|AAP96856.1| MutS protein [Salmonella enterica] gi|33149559|gb|AAP96860.1| MutS protein [Salmonella enterica] gi|33149561|gb|AAP96861.1| MutS protein [Salmonella enterica] gi|33149563|gb|AAP96862.1| MutS protein [Salmonella enterica] gi|33149565|gb|AAP96863.1| MutS protein [Salmonella enterica] gi|33149567|gb|AAP96864.1| MutS protein [Salmonella enterica] gi|33149569|gb|AAP96865.1| MutS protein [Salmonella enterica] gi|33149571|gb|AAP96866.1| MutS protein [Salmonella enterica] gi|33149573|gb|AAP96867.1| MutS protein [Salmonella enterica] gi|33149575|gb|AAP96868.1| MutS protein [Salmonella enterica] gi|33149577|gb|AAP96869.1| MutS protein [Salmonella enterica] gi|33149579|gb|AAP96870.1| MutS protein [Salmonella enterica] gi|33149583|gb|AAP96872.1| MutS protein [Salmonella enterica] gi|33149585|gb|AAP96873.1| MutS protein [Salmonella enterica] gi|33149587|gb|AAP96874.1| MutS protein [Salmonella enterica] gi|33149589|gb|AAP96875.1| MutS protein [Salmonella enterica] gi|33149595|gb|AAP96878.1| MutS protein [Salmonella enterica] gi|33149597|gb|AAP96879.1| MutS protein [Salmonella enterica] gi|33149599|gb|AAP96880.1| MutS protein [Salmonella enterica] gi|33149601|gb|AAP96881.1| MutS protein [Salmonella enterica] gi|33149605|gb|AAP96883.1| MutS protein [Salmonella enterica] gi|33149607|gb|AAP96884.1| MutS protein [Salmonella enterica] gi|33149609|gb|AAP96885.1| MutS protein [Salmonella enterica] gi|33149611|gb|AAP96886.1| MutS protein [Salmonella enterica] gi|33149613|gb|AAP96887.1| MutS protein [Salmonella enterica subsp. enterica serovar Muenchen str. SARB34] gi|33149615|gb|AAP96888.1| MutS protein [Salmonella enterica] gi|33149617|gb|AAP96889.1| MutS protein [Salmonella enterica] gi|33149619|gb|AAP96890.1| MutS protein [Salmonella enterica] gi|33149621|gb|AAP96891.1| MutS protein [Salmonella enterica] gi|33149625|gb|AAP96893.1| MutS protein [Salmonella enterica] gi|33149627|gb|AAP96894.1| MutS protein [Salmonella enterica] gi|33149629|gb|AAP96895.1| MutS protein [Salmonella enterica] gi|33149631|gb|AAP96896.1| MutS protein [Salmonella enterica] gi|33149633|gb|AAP96897.1| MutS protein [Salmonella enterica] gi|33149635|gb|AAP96898.1| MutS protein [Salmonella enterica] gi|33149639|gb|AAP96900.1| MutS protein [Salmonella enterica] gi|33149641|gb|AAP96901.1| MutS protein [Salmonella enterica] Length = 366 Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 138/348 (39%), Positives = 208/348 (59%), Gaps = 15/348 (4%) Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + A Sbjct: 1 YNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPELKEYEDKVLTSKGKA 54 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L +E + ++ L + ++ L ++ +A +D+ + LA A NY P + + Sbjct: 55 LALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLAERAWTLNYTCPTFTDKPGIRI 114 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 115 TEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTALIA 165 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V+ Sbjct: 166 LLAYIGSYVPAQNVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVL 225 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 226 MDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALE 285 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 286 HGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 333 >gi|33149581|gb|AAP96871.1| MutS protein [Salmonella enterica] Length = 366 Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 138/348 (39%), Positives = 208/348 (59%), Gaps = 15/348 (4%) Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + A Sbjct: 1 YNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPELKEYEDKVLTSKGKA 54 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L +E + ++ L + ++ L ++ +A +D+ + LA A NY P + + Sbjct: 55 LALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLAERAWTLNYTCPTFTDKPGIRI 114 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 115 TEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTALIA 165 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V+ Sbjct: 166 LLAYIGSYVPAQNVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVL 225 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 226 MDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALE 285 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 286 HGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 333 >gi|33149623|gb|AAP96892.1| MutS protein [Salmonella enterica] Length = 366 Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 138/348 (39%), Positives = 208/348 (59%), Gaps = 15/348 (4%) Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + A Sbjct: 1 YNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPELKEYEDKVLTSKGKA 54 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L +E + ++ L + ++ L ++ +A +D+ + LA A NY P + + Sbjct: 55 LALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLAERAWTLNYTCPTFTDKPGIRI 114 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 115 TEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTALIA 165 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V+ Sbjct: 166 MLAYIGSYVPAQNVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVL 225 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 226 MDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALE 285 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 286 HGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 333 >gi|21951828|gb|AAM82360.1| mismatch repair protein MutS [Salmonella enterica] Length = 376 Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 138/348 (39%), Positives = 208/348 (59%), Gaps = 15/348 (4%) Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + A Sbjct: 1 YNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPELKEYEDKVLTSKGKA 54 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L +E + ++ L + ++ L ++ +A +D+ + LA A NY P + + Sbjct: 55 LALEKQLYDELFDLLLPHLADLQQSASALAELDVLVNLAERAYTLNYTCPTFTDKPGIRI 114 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 115 IEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTALIA 165 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V+ Sbjct: 166 LLAWIGSYVPAQNVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVL 225 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 226 MDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALE 285 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 286 HGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 333 >gi|33149591|gb|AAP96876.1| MutS protein [Salmonella enterica] Length = 366 Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 138/348 (39%), Positives = 208/348 (59%), Gaps = 15/348 (4%) Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + A Sbjct: 1 YNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPELKEYEDKVLTSKGKA 54 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L +E + ++ L + ++ L ++ +A +D+ + LA A NY P + + Sbjct: 55 LALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLAERAWTLNYTCPTFTDKPGIRI 114 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 115 TEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTALIA 165 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V+ Sbjct: 166 LLAYIGSYVPAQNVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVL 225 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 226 MDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALE 285 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 286 HGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 333 >gi|33149593|gb|AAP96877.1| MutS protein [Salmonella enterica] Length = 366 Score = 261 bits (667), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 138/348 (39%), Positives = 208/348 (59%), Gaps = 15/348 (4%) Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + A Sbjct: 1 YNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPELKEYEDKVLTSKGKA 54 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L +E + ++ L + ++ L ++ +A +D+ + LA A NY P + + Sbjct: 55 LALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLAERAWTLNYTCPTFTDKPGIRI 114 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 115 TEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTALIA 165 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V+ Sbjct: 166 LLAYIGSYVPAQNVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVL 225 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 226 MDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVVNVHLDALE 285 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 286 HGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 333 >gi|225677058|ref|ZP_03788064.1| DNA mismatch repair protein [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590904|gb|EEH12125.1| DNA mismatch repair protein [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 217 Score = 261 bits (667), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 130/231 (56%), Positives = 167/231 (72%), Gaps = 17/231 (7%) Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 F + GRHP+VE K FIAN +L+ + L+TGPNM GKSTFLRQNA Sbjct: 2 FNICSGRHPVVEVNDK------FIANSINLA--------GIHLITGPNMAGKSTFLRQNA 47 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LI I+A MGS+VPA AHIG++DK+FSRVG+ DN+ +G STFMVEMIETA+I+NQAT++S Sbjct: 48 LIAILAHMGSFVPAESAHIGVIDKIFSRVGATDNITAGYSTFMVEMIETATIVNQATDRS 107 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 VILDEIGR T DGLSIA A IE++H N+CR + ATH+HELT +SK LK ++ Sbjct: 108 LVILDEIGRDTGVYDGLSIAQAVIEHIHNVNKCRAIFATHYHELTKVSKYLKNVKCFCVK 167 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + + N +IFLH+VI GIAD SYGI V KLAG P++V++RA ++ FE+L Sbjct: 168 IREWNGEVIFLHEVIEGIADESYGIHVAKLAGFPDSVLNRASEV---FEEL 215 >gi|33149557|gb|AAP96859.1| MutS protein [Salmonella enterica] Length = 366 Score = 261 bits (666), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 138/348 (39%), Positives = 208/348 (59%), Gaps = 15/348 (4%) Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + A Sbjct: 1 YNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPELKEYEDKVLTSKGKA 54 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L +E + ++ L + ++ L ++ +A +D+ + LA A NY P + + Sbjct: 55 LALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLAERAWTLNYTCPTFTDKPGIRI 114 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 115 IEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTALIA 165 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V+ Sbjct: 166 LLAYIGSYVPAQNVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVL 225 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 226 MDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALE 285 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 286 HGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 333 >gi|254567730|ref|XP_002490975.1| Protein required for mismatch repair in mitosis and meiosis, forms a complex with Msh2p to repair bo [Pichia pastoris GS115] gi|238030772|emb|CAY68695.1| Protein required for mismatch repair in mitosis and meiosis, forms a complex with Msh2p to repair bo [Pichia pastoris GS115] gi|328352492|emb|CCA38891.1| DNA mismatch repair protein mutS [Pichia pastoris CBS 7435] Length = 1173 Score = 261 bits (666), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 225/857 (26%), Positives = 417/857 (48%), Gaps = 68/857 (7%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S TP +QY EIKS D +VF++ G FYEL+ +DA +A + L G+ ++ + Sbjct: 266 SFTPFEKQYWEIKSKMYDCVVFFKKGKFYELYENDADIAHNEFDLKLAGGGR---ANMRL 322 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPL--EAKKRGN-----KSLVRRNVVRLVTP 136 GVP + +++ I G+++A +Q ES L E +++G + +++R + ++T Sbjct: 323 AGVPEMSFDYWANAFINAGYKVAKVDQKESMLAKEIREKGKTITKEEKVIKRELQCVLTG 382 Query: 137 GTLTEDQLLSPTDSNYLMAVARI------RTEWAIAWIDISTGIFKIS----TSNHDRLI 186 GTLT++ +L+ + Y +++ + RT + + ++D +TG +++ + RL Sbjct: 383 GTLTDESMLTDEMATYCLSLKEVDNGLDGRT-FGVCFVDTATGKMRLTEFEDSVECTRLE 441 Query: 187 SDIMRIDPREIIFSEKELSHAEYKSL-FETLGNVAV--AQPNV-FFDHSISESRI--ADY 240 + + ++ P+E++ ++ ++S + L F + + +P+ F +H ++ + Y Sbjct: 442 TLLAQVRPKEVLVAKNQISPLTARILRFNSPSSCIWNKLKPDTEFLNHEVTFEELTRGKY 501 Query: 241 YNITTVDTFGSFS----------QVEKTAAAAAISYIKKTQM----VNKPTIGYPEREDI 286 + + +D ++ V +A A + Y+K ++ ++ I + Sbjct: 502 FEASDLDDLSNYPPLLVEYHEKHHVAFSAFGALLWYLKSLKLDESIISMGNISPYDPYQH 561 Query: 287 QSTLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKIN 345 +++ +D NLEI T GS + +L K ++ + T G RLF + + PL I+ Sbjct: 562 ATSMTMDGVTLQNLEIFANTFDGSNKGTLFKVLNRATTPFGKRLFKDWVVHPLLLKKSID 621 Query: 346 TRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINIL 405 RLDS+ + + L + L PD+ R LSR+ G + +D + +G I+ L Sbjct: 622 ERLDSVELLLNDGELKHIFINTLSRLPDLERLLSRIHSGSLKIQDFTKVIEGFER-ISKL 680 Query: 406 NLFLKNDLPEELR---GAVEK-LKKLPQSLEKTLSSMLSDDLPTFKRDGGFL--RDGADA 459 L++ E G++ K L +LPQ LE +S + G L G + Sbjct: 681 VRTLRSSFGENFESIGGSLGKILSQLPQELEIQVSKWATSFDRVAATSQGLLIPEPGVEE 740 Query: 460 SLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLES 519 D+++ + K + +Y E K + ++ + + Y IEV S + KD + Sbjct: 741 EFDQSKLKIENLKDKLNQFLRQYRRELKCQEMEFRDSGKEIYLIEVPKKVISKVPKDWQ- 799 Query: 520 KDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNA 579 + S +TR+ + E+ + + AT ++ +++ ++ +++ SL + Sbjct: 800 -----QMGSTSKVTRYWSPEVKLVVRELMEATELHKIL-MDTLQLKVYRKFDENYSLWSE 853 Query: 580 S-QVIAIIDISIALAILAKE--QNYCRP-IIDNSTNFI-VKDGRHPIVEKTLKQQSSKPF 634 + + I ID I+LA ++ CRP I+D FI ++ RHP S+ F Sbjct: 854 TIRCIGSIDCLISLANASESLGSPSCRPEIVDKDEAFIDFEELRHPCFIPG-GASGSRDF 912 Query: 635 IANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVD 694 I ND L + LLTG N GKST LR + IMAQ+G +VPAS A + VD Sbjct: 913 IPNDVKLG----NGFANIALLTGANAAGKSTVLRMTCIATIMAQIGCFVPASKATLVPVD 968 Query: 695 KLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWAT 754 K+ +R+G+ DN+ G+STF VE+ ET IL AT +S ++LDE+GRG ++ DG +IA A Sbjct: 969 KIMTRLGANDNIMQGKSTFYVELSETKRILQNATPRSLLVLDELGRGGSSSDGFAIAEAC 1028 Query: 755 IEYLHETNRCRGLLATHFHEL--TDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADH 812 + ++ + G ATH+ L + + + V +S++ I FL+K+ G ++ Sbjct: 1029 LHHIATHIQSIGFFATHYGTLGASFIGHPQVMPLRMAILVDESSKTITFLYKLEKGASNG 1088 Query: 813 SYGIQVGKLAGLPNTVI 829 S+G+ V + G+P ++ Sbjct: 1089 SFGMHVATMCGIPKEIV 1105 >gi|33149553|gb|AAP96857.1| MutS protein [Salmonella enterica] Length = 366 Score = 260 bits (665), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 137/348 (39%), Positives = 208/348 (59%), Gaps = 15/348 (4%) Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + A Sbjct: 1 YNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPELKEYEDKVLTSKGKA 54 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L +E + ++ L + ++ L ++ +A +D+ + L+ A NY P + + Sbjct: 55 LALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLSERAWTLNYTCPTFTDKPGIRI 114 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 115 TEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTALIA 165 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V+ Sbjct: 166 LLAYIGSYVPAQNVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVL 225 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 226 MDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALE 285 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 286 HGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 333 >gi|313618992|gb|EFR90826.1| DNA mismatch repair protein MutS [Listeria innocua FSL S4-378] Length = 342 Score = 260 bits (665), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 138/335 (41%), Positives = 207/335 (61%), Gaps = 18/335 (5%) Query: 574 ESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKP 633 E L ++ ++ ID + A ++++ ++ RP + + VK GRHP+VEK + QS Sbjct: 14 ERLQKLAKSVSEIDCLQSFADISEKNHFIRPTLSEDGSLHVKQGRHPVVEKVMGAQS--- 70 Query: 634 FIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIV 693 ++ANDCDL D+N ++ L+TGPNM GKST++RQ AL I AQ+G +VPA A + I Sbjct: 71 YVANDCDL----DQNR-EILLITGPNMSGKSTYMRQVALTAICAQVGCFVPAEEATLPIF 125 Query: 694 DKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWA 753 D++F+R+G+AD+L +G+STFMVEM+E + + AT S ++ DEIGRGTAT DG+++A A Sbjct: 126 DQIFTRIGAADDLIAGQSTFMVEMLEARNAIVHATKDSLILFDEIGRGTATYDGMALAQA 185 Query: 754 TIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHS 813 IEY+HE + L +TH+HELTDL K L+ N + + N ++FLHK+ G AD S Sbjct: 186 IIEYIHENVHAKTLFSTHYHELTDLEKELRGLQNIHVSAVEENGKVVFLHKIKEGPADKS 245 Query: 814 YGIQVGKLAGLPNTVISRAYDILKTFE----KLYHHNQKDMRLYYPEIQ-----TKESKN 864 YGI V +LA LP ++I RA IL+ E K+ K + E+Q + K Sbjct: 246 YGIHVAELAELPKSLIERASRILEQLESNDKKIIITQDKQPEEIHEEVQLSMFPVEPEKK 305 Query: 865 NLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 SK KL E I +N+ +M+P+ A+ LY +++ Sbjct: 306 ASSKETKLLKE-IAAMNIMQMTPMDAMNKLYELQS 339 >gi|327350733|gb|EGE79590.1| DNA mismatch repair protein msh6 [Ajellomyces dermatitidis ATCC 18188] Length = 1244 Score = 260 bits (664), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 232/867 (26%), Positives = 396/867 (45%), Gaps = 81/867 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P +QY EIK D++VF++ G FYEL+ +DA + + + LT R ++ M G Sbjct: 347 SPFEKQYWEIKQKFWDTVVFFKKGKFYELYENDATIGHQLFDLKLTDR-----VNMRMVG 401 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL--EAKKRGNKS---------LVRRNVVRLV 134 VP + +H+ + + G +IA +Q ES L E +++ K+ ++RR + ++ Sbjct: 402 VPEMSLDHWANQFVAKGFKIARVDQSESALGKEMREKQGKTNGTPGKQDKIIRRELACVL 461 Query: 135 TPGTLTEDQLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFKISTSNHD----RLI 186 T GTL + +L S Y +A+ + IA++D +TG F ++ D + Sbjct: 462 TSGTLVDGSMLQDDMSTYCVAIKEALVNDLPAFGIAFVDTATGQFYLAEFIDDVDMTKFE 521 Query: 187 SDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA---QPNVFF---DHSISESRIADY 240 + + + P+E++ + +S + L G + +P F D ++ E ++Y Sbjct: 522 TFVAQTRPQELLLEKSVMSTKALRILKNNTGPTTLWNYLKPCKEFWEADITVRELDASNY 581 Query: 241 YNITTVDTFGSFSQVEK---------TAAAAAISYIKKTQMVNK-PTIG-YPEREDIQ-- 287 + D ++ + + +A A + Y+K ++ TIG + + I+ Sbjct: 582 FVSDDGDNIEAWPEALRHARDKEFVMSAFGALVQYLKMLKIERDLITIGNFTWYDPIKKA 641 Query: 288 STLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINT 346 ++L +D NLEI + G +E +L + ++ T G R+F + + PL D+ KIN Sbjct: 642 TSLVLDGQTLINLEIFSNSFDGGQEGTLFQLLNRCTTPFGKRMFKQWVCHPLMDTKKINA 701 Query: 347 RLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILN 406 RLD+++ + + N L PD+ R +SR+ + +D + +G I+ Sbjct: 702 RLDAVDALNADRSIQNQFSSQLTKMPDLERLISRVHARSCKAQDFLRVLEGFEQ-IDYAM 760 Query: 407 LFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFL--RDGADASLDET 464 LK P E G + +L L L + T +D G L G + D + Sbjct: 761 GLLKETGPGE--GVIGQLVASMPDLSGHLQYWKTAFDRTKAKDSGILVPEAGVEEDFDAS 818 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 + + + L K ++ + + N Y +EV +V K + Sbjct: 819 HDRISEIESDLDQLLKKVRKQLGSNAIVYRDNGKEIYQLEVPIKIKNVPKS-------WD 871 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 RF EL L + A + I E E + A +VIA Sbjct: 872 QMSATKQAKRFYFAELRSLIRELQEAQETHSQIVKEVAGRFYARFDENYSTWLAAVRVIA 931 Query: 585 IIDISIALAILAKEQNY--CRPII--DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCD 640 +D I+LA + Y CRP+ D + ++ RHP + + FI ND Sbjct: 932 QLDCLISLARASSALGYPSCRPVFVDDERSVLEFEELRHPCMLPNVGD-----FIPNDVK 986 Query: 641 LSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRV 700 L NS + LLTG N GKST LR VIMAQ+G +VP A + VD++ SR+ Sbjct: 987 LG----GNSPNINLLTGANAAGKSTILRMTCTAVIMAQIGCHVPCKSARLTPVDRVMSRL 1042 Query: 701 GSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHE 760 G+ DN+ + +STF VE+ ET IL++AT +S VILDE+GRGT++ DG+++A A + ++ Sbjct: 1043 GANDNIFASQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVLHHVAT 1102 Query: 761 TNRCRGLLATHFHELT-------DLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHS 813 G ATH+H LT +++ R H V D + + FL+K+ G+A+ S Sbjct: 1103 HIGALGFFATHYHSLTAEFEGHPEIAPRRMRIH-----VDDEEKRVTFLYKLEDGVAEGS 1157 Query: 814 YGIQVGKLAGLPNTVISRAYDILKTFE 840 +G+ + G+P+ V+ RA K +E Sbjct: 1158 FGMHCASMCGIPDKVVERAEVAAKQWE 1184 >gi|242011381|ref|XP_002426429.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212510534|gb|EEB13691.1| conserved hypothetical protein [Pediculus humanus corporis] Length = 1265 Score = 260 bits (664), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 254/933 (27%), Positives = 426/933 (45%), Gaps = 155/933 (16%) Query: 20 ENLKS-STPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 E+ K+ +TP +RQ+ E+KS + D ++F+++G FYEL+ DA++ L +T K Sbjct: 327 EDFKAKATPAVRQWWELKSDHYDCILFFKVGKFYELYHMDAVIGVNELSLTFMK------ 380 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESP---LEAKKRGNK-----SLVRRNV 130 D G P + + L++ G+++A EQ E+P E K +K +V R + Sbjct: 381 GDFAHSGFPEISYGRFSTILVQKGYKVARVEQTETPEMMTERCKHQSKVTKFDKVVNREI 440 Query: 131 VRLVTPGTLTEDQLLSPTD-------SNYLMAVARIRTE------WAIAWIDISTGIFKI 177 ++ T GT Q+ S D +NYL A+A +T+ + + +ID S G F + Sbjct: 441 CQVTTKGT----QIFSFIDGEAKEYETNYLFALAE-KTDNSGNIAFGVCFIDTSIGTFHL 495 Query: 178 STSNHDRLISDIMRI----DPREIIFSEKELSHAEY---KSLFETLGNVAVAQPNVFFDH 230 N D+ +S + + P +I++ + +LS K F ++ +A F+ Sbjct: 496 GQFNDDKFLSRLRIVLSHHPPVQILYEKYQLSGKTMQLLKCAFNSVLQEPLAAETEFWSA 555 Query: 231 SISESRIADYYNITT------------------VDTFG----SFSQVEKTAAAAAISYIK 268 S + S +A+ + T D+ G ++ A A + Y+K Sbjct: 556 SKTLSTLAEENHFTKPNENGTKWPDAIKKFLNPADSLGLSPSEDGELAIKALGACVWYLK 615 Query: 269 KTQM------VNKPTIGYPERE--------------DIQSTLFIDSAARSNLEILRTLSG 308 + + + K I P + D+ + +DS NLE++ +G Sbjct: 616 QCFLDQQLLAMQKFEIYTPINKISEVNFETNMATSVDLGRYMILDSLTLENLEVINNSNG 675 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKIL 368 + +LL+ +D+ T G RL + I +PL + I +R +I + +I I+ +L Sbjct: 676 EKHGTLLEKLDHCCTFTGKRLLRQWICTPLCSISGITSRQKAI-IELSEKGVIKKIKSML 734 Query: 369 KSSPDVPRSLSRLKI------GRGEPKDIAVI-RDGIRSGINILNLFLKNDLPEELRGAV 421 K PD+ R L ++ + P A+ D + S IL+ E+++ + Sbjct: 735 KGVPDLERLLGKIHTQGNAIRSKTHPDSRAIFFEDKLYSKRKILDFLSALTGFEKVQNLI 794 Query: 422 EKLKK--------LPQSLEKTLSSM---LSDDLPTFK---------RDGGFL--RDGADA 459 E L+ L Q L + + LS+DL FK ++G + G D+ Sbjct: 795 ETLQNEFEWDSELLRQCLLFSPNGKFKDLSEDLNFFKNAFDHDLAKKEGCIIPVSSGVDS 854 Query: 460 SLD----ETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKK 515 D E +S+ +S + + S Q ++ + T +K + N + +EV S A Sbjct: 855 EYDSVVKEIKSIEIESNKYLKS-QCQFFQ-TSVKYYGTEKNR---FQLEVPDSQAK---- 905 Query: 516 DLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN--SALLIELESFEILSNAIIEQS 573 ++ + + RFTT E R+ A + S +L +L I + ++ Sbjct: 906 --KANENYEFTSCRKGYKRFTTPETKSFLQRLKQAEDMKSNILKDLRR-RIFAQ-FSDKY 961 Query: 574 ESLDNASQVIAIIDISIALAILAKEQ-------NYCRPIIDNSTNFIVKDGRHPIVEKTL 626 E+ A Q ++++D ++LA + + P I+N + +GRHP + Sbjct: 962 ENWITAIQCVSLLDALMSLAEYCSLEPGEMCLPEFSEPQINNKPFIDIANGRHPCL---- 1017 Query: 627 KQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPAS 686 FI ND L + N L LLTGPNMGGKST +RQ LI IMAQMG VPA Sbjct: 1018 --SVENGFIPNDIKLGTNSFSN---LVLLTGPNMGGKSTLMRQLGLITIMAQMGLKVPAE 1072 Query: 687 YAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLD 746 + +D++F+R+G+ D++ +G STF VE+ E + ILN AT S ++DE+GRGT+T D Sbjct: 1073 TCKLIPIDRIFTRIGAKDDILAGESTFYVELSEASMILNNATQFSLALIDELGRGTSTYD 1132 Query: 747 GLSIAWATIEYLHETNRCRGLLATHFHELTD---LSKSLKRFHNATLQVSD----SNEGI 799 G +IA++ ++ L CR L +TH+H L D S S+ H A + +D S E + Sbjct: 1133 GTAIAYSVVKELSHRG-CRTLFSTHYHILIDDFKESDSVTLGHMACMVETDEEDPSEETV 1191 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 FL+K + G SYG KLAG+P +I A Sbjct: 1192 TFLYKFVDGACPKSYGFNAAKLAGIPINIIKAA 1224 >gi|170054869|ref|XP_001863325.1| DNA mismatch repair protein MSH6 [Culex quinquefasciatus] gi|167875012|gb|EDS38395.1| DNA mismatch repair protein MSH6 [Culex quinquefasciatus] Length = 1130 Score = 260 bits (664), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 253/940 (26%), Positives = 424/940 (45%), Gaps = 158/940 (16%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 E L + TP MRQ+ E+KS + D ++F+++G FYEL+ DA + + LG + K Sbjct: 198 ESYLATLTPAMRQWWELKSRHYDCVLFFKVGKFYELYHMDASVGVKELGFSYMK------ 251 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESP--LEAKKRGNKS------LVRRNV 130 + G P L++ G+++A EQ E+P + + + NK+ +V+R + Sbjct: 252 GEFAHSGFPEQAYERMATSLVERGYKVARVEQTETPDMMSERCKKNKTNSKYDKVVKREI 311 Query: 131 VRLVTPGTLT---EDQLLSPTDSNYLMAVARIRT--------EWAIAWIDISTGIFKIST 179 ++ GT + Q+ D NY++A+A + + +ID S GIF + Sbjct: 312 CQVSLKGTEVYGQQVQMTQSADPNYMLAIAERSAGKGKSGGVRYGVCFIDTSLGIFHLGE 371 Query: 180 SNHD----RLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQP----NVFFDHS 231 + D RL++ + P ++ E+ L +F+T+ +P + F+ Sbjct: 372 FDDDGQASRLLTLLSHYAP-ALVLHERSLVSPGIHQIFKTVLAGVRKEPLTNESQFWSAE 430 Query: 232 ISESRIADYYNITTVD----------------------TFGSFSQVEKTAAAAAISYIKK 269 + +A+ + ++ D T S++ A I Y+K+ Sbjct: 431 KTLKYLAENHYGSSSDEKSAKWPEAVRCLLDKNDHLGLTPNEDSELSLKALGGCIWYLKR 490 Query: 270 TQMVNKPTIGYPEREDIQSTLFI---DSAARSNLEILR----------TLSGSR----EQ 312 ++++ + + E L+I D+ R L+I TLS R E Sbjct: 491 C-LLDQQIVALAKFE-----LYIPPDDNVTRKQLKISNSNRFMVLDAITLSNLRLTDGEL 544 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 SLL +D+ T G RL + SP + I R D+I +++ L+ +++IL P Sbjct: 545 SLLNRLDHCCTKFGKRLLHHWVCSPSCEREIIIQRQDAIKELVEDINLLQDVRQILGELP 604 Query: 373 DVPRSLSRL-KIGRGE-----PKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK 426 D+ R L+++ G E P A++ + + F+ LRG + L + Sbjct: 605 DLERMLAQIHSFGNAERMKNHPDGRAILYEEQTYSKKKIQDFICT-----LRG-FKALTR 658 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGA------DASLDETRSLR------------ 468 LP+ S +L L GG D A + S D +L+ Sbjct: 659 LPELFAGVKSDLLIR-LTQLTLKGGVFPDMASKISFFEESFDHEAALKTGVIAPEKGLDT 717 Query: 469 --DQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF--------IEVTSSSASVLKKDLE 518 D +R I + L EE K K K + YF +E+ +A KK Sbjct: 718 EYDAVQRDIQGI-LDELEEYKRKQEKY-FGCKIDYFGSDKKRFQLEIPEGAA---KKANS 772 Query: 519 SKDRFIHRQTMSNLTRFTTLELIDLENRI--TNATNSALLIELES--FEILSNAIIEQSE 574 ++ + + R+ T E + R+ T +L +L FE S+A Sbjct: 773 GYSLEGQKKGKNGVKRYHTDETREFLKRMMQTEDQRKVVLKDLARRIFEKFSSAYDMWKT 832 Query: 575 SLDNASQVIAIIDISIALAILAKEQ-NYCRP-IIDNSTN----FIVKDGRHPIVEKTLKQ 628 +D ++ +D+ ALA + + C P I+D F + +G HP V Sbjct: 833 CVD----LVGTLDVLTALAEFGRSSGSTCFPEILDTDEEKGQIFELSEGIHPCV------ 882 Query: 629 QSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYA 688 + +I N L ++ +L LLTGPNMGGKST +RQ ++ IMAQ+G+ +PA Sbjct: 883 SDPENYIPNGVSLG----QDGTRLILLTGPNMGGKSTLMRQVGVLAIMAQIGAPIPAESC 938 Query: 689 HIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGL 748 + ++D++F+R+G+ D++ +G STF+VE+ ET++IL AT +S V+LDE+GRGTAT DG Sbjct: 939 RLTLIDRIFTRLGANDDIMAGHSTFLVELNETSTILKHATEKSLVLLDELGRGTATYDGT 998 Query: 749 SIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRF---HNATLQVSDSNEG-----II 800 SIA A +++L E +CR + +TH+H L D + +R H A + + +E + Sbjct: 999 SIAGAVVQFLAEL-KCRSMFSTHYHNLVDNFERDERILLGHMACMVEKEDDEDPTQETVT 1057 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 FL+K PG SYG KLAG+P +I RAY++ KT E Sbjct: 1058 FLYKYAPGSCPKSYGFNAAKLAGMPPQIIKRAYELSKTVE 1097 >gi|225470684|ref|XP_002263286.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1137 Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 242/959 (25%), Positives = 430/959 (44%), Gaps = 179/959 (18%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ +Q +++K PD L+ +G Y F +DA +A+R LGI H+ + Sbjct: 114 TPLEQQVVDLKQKYPDVLLMVEVGYRYRFFGEDAEIAARVLGIY-----AHVDHNFLTAS 168 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSL--VRRNVVRLVTPGTLTEDQ 143 +P N ++++L+ G ++ + +Q E+ K G+ L R + L T TL + Sbjct: 169 IPTFRLNVHVRRLVSAGFKVGVVKQTETA-AIKAHGSNKLGPFCRGLSALYTKATLEAAE 227 Query: 144 LLSPTD------SNYLMAVAR--IRTE-----WAIAWIDISTGIFKISTSN----HDRLI 186 + + +NYL+ V I E D+ GI + S H + Sbjct: 228 DVGGGEEECGSYNNYLVCVVEKGISVENSKDCGVGGGFDVRIGIVAVEVSTGDVVHGKFN 287 Query: 187 SDIMR---------IDPREIIF-------SEKEL------------------------SH 206 + MR + P E++ +EK L + Sbjct: 288 DNFMRAGLEAVILSMSPAELLLGYPLSKQTEKLLLAYAGPASNVRVERTSRDCFSDGGAL 347 Query: 207 AEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYN-ITTVDTFGSFSQVEKTAAAAAIS 265 AE SL+E L N DH + + + + N ++ S + A A I Sbjct: 348 AEVMSLYENLSE------NSRADHQVDNTEVMEQENHCLAIEGIMSMPDLAVQALALTIR 401 Query: 266 YIKKTQMVNKPTIGY---PEREDIQSTLFIDSAARSNLEILRTLS-GSREQSLLKTIDYS 321 ++K+ + +G P +++ TL + A LE+L S GS SLL T++++ Sbjct: 402 HLKQFGLERILCMGASFRPFSSNMEMTL--SANALQQLEVLNNHSDGSESGSLLHTMNHT 459 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSI--------------NF-----------FIQ 356 +T G RL ++ PL DS I+ RLD++ NF ++Q Sbjct: 460 LTIFGSRLLRHWVSHPLCDSNMISARLDAVSEIVMSMGSCKASQNFGGIDEGDSDVTYVQ 519 Query: 357 NPI--LINPIQKILKSSPDVPRSLSRLKIGRGEPKD-IAVIRDGIRSGINILNLFLK-ND 412 + L++ + L SPD+ R L+R+ + I+V + + +G + L ++ D Sbjct: 520 PEVNYLLSSVLTTLGRSPDIQRGLTRIFHRTATASEFISVTQAILFAGKQLQRLHIEEKD 579 Query: 413 LPEE----------LR---------GAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFL 453 + E+ LR G + KL +L K + DLP + Sbjct: 580 VDEKGQSRSVRSVLLRKLILTASSSGIIGNAAKLLSTLNKEAAD--KGDLPNLF----II 633 Query: 454 RDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVL 513 G + + RSL +K + L Y ++ ++ NL+ + + IE L Sbjct: 634 SSGQFPEVAKARSLVQSAKEKLDLLIGLYRKQLRMNNLEFMSVSGTTHLIE--------L 685 Query: 514 KKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQS 573 D++ ++ + R+ E++ ++++ A ++ +++ A + Sbjct: 686 PVDVKVPSNWVKVNSTKKTVRYHPPEVLSALDQLSLANEELMIACRGAWDSFLRAFDKYF 745 Query: 574 ESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI---VKDGRHPIVEKTLKQQS 630 A Q +A +D +LAIL++ +NY RP+ + + + GRHP++E L+ Sbjct: 746 SEFQAAVQALATLDCLHSLAILSRNKNYVRPVFVGDSEPVQMHICSGRHPVLETVLQDN- 804 Query: 631 SKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHI 690 F+ ND +L + ++TGPNMGGKS ++RQ ALI IMAQ+GS+VPAS A + Sbjct: 805 ---FVPNDTNLHADGEY----CEIVTGPNMGGKSCYIRQVALIAIMAQVGSFVPASSAKL 857 Query: 691 GIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSI 750 ++D + +R+GS+D++ GRSTF+ E+ E + I++ T++S VI+DE+GRGT+T DG++I Sbjct: 858 CVLDGIHTRMGSSDSIQQGRSTFLEELSEASHIIHNCTSRSLVIIDELGRGTSTHDGVAI 917 Query: 751 AWATIEYLHETNRCRGLLATHFHELTDLSK----SLKRFHNATL---------------- 790 A+AT+ YL E RC L TH+ ++ D+ S+ +H + + Sbjct: 918 AYATLHYLLEHKRCMVLFVTHYPKIVDVKNEFPGSVGAYHVSYMMSQRAMDMDTDTDKTD 977 Query: 791 -------QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 Q D +E + +L+K++PG+++ S+G +V +LA LP++ I RA + E + Sbjct: 978 SKSDKNAQTMD-HEDVTYLYKLVPGVSERSFGFKVAQLAQLPSSCIRRANVMAAELEAM 1035 >gi|33149523|gb|AAP96842.1| MutS protein [Salmonella enterica] Length = 366 Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 137/348 (39%), Positives = 208/348 (59%), Gaps = 15/348 (4%) Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + A Sbjct: 1 YNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPELKEYEDKVLTSKGKA 54 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L +E + ++ L + ++ L ++ +A +D+ + LA A NY P + + Sbjct: 55 LALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLAERAWTLNYTCPTFTDKPGIRI 114 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 +GRHP+VE+ L + PFIAN +LS ++ ++TGPN+GGKST++RQ ALI Sbjct: 115 TEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNVGGKSTYMRQTALIA 165 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V+ Sbjct: 166 LLAYIGSYVPAQNVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVL 225 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 226 MDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALE 285 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 286 HGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 333 >gi|302692610|ref|XP_003035984.1| hypothetical protein SCHCODRAFT_52102 [Schizophyllum commune H4-8] gi|300109680|gb|EFJ01082.1| hypothetical protein SCHCODRAFT_52102 [Schizophyllum commune H4-8] Length = 1152 Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 241/950 (25%), Positives = 431/950 (45%), Gaps = 125/950 (13%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ +Q +E+K NP +++ +G Y+ F +DA +A++ LG+ + ++ + Sbjct: 176 TPLEKQVLELKKANPGTVLMVEIGYKYKFFGEDAHVAAKELGMVC-----YNDRNFDVAT 230 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSL-VRRNVVRLVTPGTLTED-- 142 +P H + +++KL+ G+R+ +C+Q E+ K +S RR + RL T T +D Sbjct: 231 IPSHRRDIHLKKLLSQGYRVGVCDQTETAALKKVSDQRSAPFRRELTRLYTAATYVDDLD 290 Query: 143 --QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLIS----DIMRIDPRE 196 +S + + + T A A D+ + IS S+ D + + MR++ Sbjct: 291 SVDDISGSSAPPFTCIVEESTSGAGA--DVHVAMISISPSSGDVVWDAFDDNPMRLELEA 348 Query: 197 IIFSEKELSHAEYKSLF-----------ETLGNVAVA-----QPNV-----FFDHSISES 235 + + L H L + LG+ VA Q V D++ + + Sbjct: 349 SAYHDTRLVHTRPAELLLPKTGLSGPTQKMLGHFTVATASGTQTRVEHFKGQMDYTDAFA 408 Query: 236 RIADYYN----ITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTI------------- 278 ++++Y+ T+ + S + A+ A S + P + Sbjct: 409 YVSEFYSQKAPATSDGSISGASHLNPNASEAFTSGALMAAAADFPNLVVIALAHTIKHLS 468 Query: 279 GYPEREDIQST-LFIDSAARSNL----EILRTLS-------GSREQSLLKTIDYSITGAG 326 + + ++ T F AAR+++ LR L G SLL +D + T G Sbjct: 469 AFGLADALRETRFFARFAARTHMLLAGNTLRNLEIYANETDGEVRGSLLWVLDQTQTKFG 528 Query: 327 GRLFAERIASPLTDSTKINTRLDSINFFIQNPI--LINPIQKILKSSPDVPRSLSRLKIG 384 RL + PL D ++ R+ ++ + + L+ ++++L+ PD+ + L +++ G Sbjct: 529 ARLLRSWVGRPLIDKRVLDERVAAVEELVSSASEKLVT-LRQLLRRMPDLAKGLCKIQYG 587 Query: 385 RGEPKDIAV-------IRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS--LEKTL 435 + +P+++A+ I D + ++ ++++ E+ A+ K+K L +L Sbjct: 588 QCKPEELAILLTSFKRIGDAFPDVNSPADVGFQSNVLNEILYALPKIKPAIDEIVLHISL 647 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + + +D G A LD + R + + + + + +LK H Sbjct: 648 KEAAAGNREHLWKDPGRY----PAVLDAFQG-RAMVEVELEEELKRVRKVLRYPSLKWLH 702 Query: 496 NNNLGYFIEVTSSSASVLKKD--LESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 + Y IEV S + D L S+ +F R T + LI R + Sbjct: 703 QTDAEYLIEVKKSENRPIPDDWKLVSRTKFYERYHTP-----TIINLIAERERYMETATA 757 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI 613 F LS L +A +A D ++LA +A Y RP + Sbjct: 758 EARAAYSEF--LSEIARTHYAPLRHAVNQLAAADCLLSLAQVALRDGYVRPEFVDEDALD 815 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + GRHP+VE TL+ PF+ ND + + S + ++TGPNMGGKS+ +R ALI Sbjct: 816 IVAGRHPMVE-TLRDD---PFVPNDVGMG----RGSPRSKIITGPNMGGKSSCVRMVALI 867 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 IMAQ+G YVPA + ++D + +R+G++D+LA GRSTFMVEM ET+ IL+ AT +S V Sbjct: 868 AIMAQIGCYVPAEAVRMSLLDSVLTRMGASDDLARGRSTFMVEMTETSEILHTATERSLV 927 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHF--------HELTDLSKSLKRF 785 ILDE+GRGT+T DG++IA AT+ YL C+ L TH+ + ++L Sbjct: 928 ILDELGRGTSTFDGMAIADATMHYLLSEKHCKTLFITHYPLVATNLEQKFMKEVENLHMA 987 Query: 786 HNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH 845 + A L++ + E I FL+++ GI S+G++ G+LAGLP TV+ A ++F+ Sbjct: 988 YRADLRIDGTRE-ITFLYRLTSGITSESFGVECGRLAGLPETVLRTASQRSQSFQV---- 1042 Query: 846 NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 E++ + +N + +++ + + +M TA T+Y Sbjct: 1043 ----------EVEARMKRNRFVPSRVSYIQVLTLVQATQMC--TAHTTMY 1080 >gi|189203603|ref|XP_001938137.1| DNA mismatch repair protein mutS [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187985236|gb|EDU50724.1| DNA mismatch repair protein mutS [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 942 Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 127/274 (46%), Positives = 181/274 (66%), Gaps = 7/274 (2%) Query: 565 LSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEK 624 L A++ L + V+ +D++ A AILA E+N+ RPI+ + V GRHP+VE Sbjct: 659 LREAVVRNLVKLRRNAVVLDELDVAGAFAILAAEKNFVRPILSAEPSNNVVGGRHPVVET 718 Query: 625 TLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684 L +Q K F NDC L ++WL+TGPNM GKST+LRQNALI I+AQ GS+VP Sbjct: 719 GLDEQGRK-FAPNDCLLG-----EKERIWLITGPNMAGKSTYLRQNALISILAQTGSFVP 772 Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744 A YA IG+VDK+FSRVGSADNL +STFMVEM+ETA IL +AT +SFVI+DE+GRGT Sbjct: 773 AEYAEIGLVDKIFSRVGSADNLYQDQSTFMVEMLETAQILKEATPRSFVIMDEVGRGTTP 832 Query: 745 LDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG-IIFLH 803 DG+++ +A + +L+ N+CR L ATHFH LTD++K ++ V + +G ++H Sbjct: 833 EDGIAVGYACLHHLYHVNQCRTLFATHFHALTDMTKDFEKLGCYCNDVQEEPDGKFSYIH 892 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILK 837 ++ G+ S+ ++V ++AGLP ++ A +LK Sbjct: 893 RLRKGVNRESHALKVARVAGLPEDAVAIAASVLK 926 Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 102/384 (26%), Positives = 178/384 (46%), Gaps = 47/384 (12%) Query: 47 RMGDFYELFF---DDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK-IG 102 R+G FYEL+F D+ +PM G P + + Y++ L++ + Sbjct: 43 RVGGFYELYFEHADEFAPLLNLKKSKKKTMKGSKKPAVPMAGFPAYQLDRYLKILVQDLN 102 Query: 103 HRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVA----- 157 +AI ++ + + A+ +G +R+ V R+VTPGTL ++ + P ++NYL++V Sbjct: 103 KHVAISDEFINDVSARAKGEPQYMRK-VSRIVTPGTLIDEHFMDPWENNYLLSVHVDPKA 161 Query: 158 ---------------------RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPRE 196 RTE +AWID+S+G F +++ L S I RI PRE Sbjct: 162 LSEEKAVKESPGSPSVSSILNLPRTEVGLAWIDLSSGDFLTQSTDIASLPSAIARIKPRE 221 Query: 197 IIFSE--KELSHAEYKSLFETLGNVAV-----AQPNVFFDH-SISESRIADYYNITTVDT 248 I+ +E H+ S+ + G+ QP D + E + D+ Sbjct: 222 ILLDSVFQEHDHSRIVSIMQEDGHTVTFQKPSEQPLTVTDWIPMLEDVVEDF-------D 274 Query: 249 FGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-S 307 +F+ E A + + Y+K + ++ + P R + + ID ++ LEI T+ Sbjct: 275 MANFTSSEVAAGGSLLHYVKHQLLGSRTRLQAPVRHQAEEHMSIDKSSLRALEIRSTIRE 334 Query: 308 GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI 367 G+ E SLL +++ ++T +G RL +R+A+P + IN RLD + IQ P L I + Sbjct: 335 GTLEGSLLHSLNRTVTKSGTRLLTQRLAAPSMSLSTINDRLDLVEEMIQYPQLRQDIIAL 394 Query: 368 LKSSPDVPRSLSRLKIGRGEPKDI 391 L + D R +++ GRG+ D+ Sbjct: 395 LGQTYDSLRLVTKFTYGRGDADDL 418 >gi|33149603|gb|AAP96882.1| MutS protein [Salmonella enterica] Length = 366 Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 137/348 (39%), Positives = 207/348 (59%), Gaps = 15/348 (4%) Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + A Sbjct: 1 YNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPELKEYEDKVLTSKGKA 54 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L +E + ++ L + ++ L ++ +A +D+ + LA A NY P + + Sbjct: 55 LALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLAERAWTLNYTCPTFTDKPGIRI 114 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 115 TEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTALIA 165 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++A +GSYVPA IG +D++F+RVG+AD+LASGRSTFMVEM ETA+IL+ AT S V+ Sbjct: 166 LLAYIGSYVPAQNVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVL 225 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 226 MDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALE 285 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + I F+H V G A SY + V LAG+P VI RA L+ E + Sbjct: 286 HGDTIAFMHSVQDGAASKSYSLAVAALAGVPKEVIKRARQKLRELESI 333 >gi|213647726|ref|ZP_03377779.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 535 Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 172/565 (30%), Positives = 289/565 (51%), Gaps = 53/565 (9%) Query: 18 LEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 +++ + TPMM+QY+++K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG Sbjct: 5 FDKDFSNHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASA 64 Query: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPG 137 G+ IPM G+P H +Y+ KL+ G +AICEQI P + K V R VVR+VTPG Sbjct: 65 GEPIPMAGIPHHAVENYLAKLVNQGESVAICEQIGDPATS-----KGPVERKVVRIVTPG 119 Query: 138 TLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPRE 196 T++++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E Sbjct: 120 TISDEALLQERQDNLLAAIWQDGKGYGYATLDISSGRFRLSEPADRETMAAELQRTNPAE 179 Query: 197 IIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE 256 ++++E AE +L E + ++ I +R T D G F VE Sbjct: 180 LLYAE---DFAEM-ALIEG---RRGLRRRPLWEFEIDTARQQLNLQFGTRDLVG-FG-VE 230 Query: 257 KT-----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 AA + Y+K TQ + P I E Q ++ +D+A R NLEI + L+G E Sbjct: 231 NASRGLCAAGCLLQYVKDTQRTSLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGVE 290 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 +L +D ++T G R+ + P+ ++ + R +I ++ +Q +L+ Sbjct: 291 NTLAAVLDCTVTPMGSRMLKRWLHMPVRNTDILRERQQTIGALQDT---VSELQPVLRQV 347 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP-QS 430 D+ R L+RL + P+D+A +R + LP EL +E + P Q+ Sbjct: 348 GDLERILARLALRTARPRDLARMRHAFQQ------------LP-ELHAQLETVDSAPVQA 394 Query: 431 LEKT----------LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 L K L + D P RDGG + G LDE R+L D + + L++ Sbjct: 395 LRKKMGDFAELRDLLERAIIDAPPVLVRDGGVIAPGYHEELDEWRALADGATDYLDRLEI 454 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 + E T + LK+ +N GY+I+++ + + + ++ RQT+ N R+ EL Sbjct: 455 RERERTGLDTLKVGYNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPEL 508 Query: 541 IDLENRITNATNSALLIELESFEIL 565 + E+++ + AL +E + ++ L Sbjct: 509 KEYEDKVLTSKGKALALEKQLYDEL 533 >gi|171679972|ref|XP_001904932.1| hypothetical protein [Podospora anserina S mat+] gi|170939612|emb|CAP64839.1| unnamed protein product [Podospora anserina S mat+] Length = 1230 Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 237/881 (26%), Positives = 394/881 (44%), Gaps = 106/881 (12%) Query: 30 RQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVH 89 +QY +IK D++VF++ G FYEL+ +DA + + + +T R ++ M GVP Sbjct: 333 KQYWDIKKNLWDTVVFFKKGKFYELYENDATIGHQLFDLKMTDR-----VNMRMVGVPES 387 Query: 90 TANHYIQKLIKIGHRIAICEQIESPL-------EAKKRGNKSLVRRNVVRLVTPGTLTED 142 + + ++ + + G ++A +Q+ES L +AK + ++RR + ++T GTL + Sbjct: 388 SLDMWVNQFVAKGFKVARVDQMESALGKEMRERDAKAKKADKIIRRELACILTAGTLVDG 447 Query: 143 QLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFKISTSNHD----RLISDIMRIDP 194 +L + Y A+ + + IA++D +TG F IS D + + + + P Sbjct: 448 SMLQDDMATYCAAIKESVVDGKPCFGIAFVDAATGQFLISEFEDDVDLTKFETFVAQTCP 507 Query: 195 REIIFSEKELSHAEYKSLFETLGNVAVA---QPNV-FFDHSISESRIADYYNITTVDTFG 250 RE++ + LS + L + +P F+D S + + D Sbjct: 508 RELVLEKSRLSTKALRILKNNTAPTTIWNYLKPGTEFWDAETSRRELECNGYFSNADNQE 567 Query: 251 SF--SQVEK--------TAAAAAISYIK----KTQMVNKPTIGYPEREDIQSTLFIDSAA 296 ++EK +A + Y++ + ++++ TL +D Sbjct: 568 EVWPEKLEKVKEKDLLMSALGGLVHYLRFLKLERSLLSQGNFEPYNPIHRNGTLILDGQT 627 Query: 297 RSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFI 355 NLEI T +G E +L ++ IT G RLF + + PL + KIN RLD+++ Sbjct: 628 LINLEIFSNTANGGVEGTLFNLLNRCITPFGKRLFRQWVCHPLCNIQKINERLDAVDMLS 687 Query: 356 QNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG---IRSGINILNLFLK-N 411 + + + PD+ R +SR+ G P+D + +G I +N L F N Sbjct: 688 NDKSALAEFSSHMSKMPDLERLISRIHAGSCRPEDFVRVLEGFEQIDYTMNFLGAFGGGN 747 Query: 412 DLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQS 471 L + L + LK+ E + D + G D D S DE ++++ Sbjct: 748 GLVDRLISCMPDLKEPLGYWETAFDRKKARDSKVLIPERGIEED-YDNSEDELNRIKEE- 805 Query: 472 KRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSN 531 +A L K K + LK Y IEV S+ + S R + Sbjct: 806 ---LAQLLEKQKTALKCRQLKFTDVGKEVYQIEVPKST------KVPSSWRQMSATAAVK 856 Query: 532 LTRFTTLELIDLENRITNATNSALLIELES---------FEILSNAIIEQSESLDNASQV 582 F LE + E + T T+S ++ E+ S +E+ AI ++ Sbjct: 857 RYYFRELESLVRELQETEETHSQIVKEVASRFFKKFDVDYEVWLQAI-----------RI 905 Query: 583 IAIID--ISIALAILAKEQNYCRP--IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIAND 638 I+ +D +S+A + LA CRP + D + ++ RHP + + FI ND Sbjct: 906 ISQLDCLMSLAKSSLALGLPSCRPEFVDDERSVLHFEELRHPCMINRVDD-----FIPND 960 Query: 639 CDLSCPNDKNSGKLWLLTGPNMGGKSTFLR-----------------QNALIVIMAQMGS 681 L K+ LLTG N GKST LR Q VIMAQ+G Sbjct: 961 IHLG----GEQAKINLLTGANAAGKSTVLRMVSSLLNILLCSTANIFQTCTAVIMAQIGC 1016 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 YVPA A + VD++ SR+G+ DN+ + +STF VE+ ET IL +AT++S VILDE+GRG Sbjct: 1017 YVPAVSAKLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILAEATSRSLVILDELGRG 1076 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHEL-TDLSKSLK-RFHNATLQVSDSNEGI 799 T++ DG+++A A + ++ C G ATH+H L T+ + R + V N + Sbjct: 1077 TSSYDGVAVAQAVLHHVASHIGCVGFFATHYHSLATEFENHPEIRARRMQIHVDGGNRRV 1136 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 FL+K+ G+A+ S+G+ + G+PN VI A K +E Sbjct: 1137 TFLYKLEDGVAEGSFGMHCAAMCGIPNKVIEEAEVAAKEWE 1177 >gi|254992698|ref|ZP_05274888.1| DNA mismatch repair protein MutS [Listeria monocytogenes FSL J2-064] Length = 353 Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 141/352 (40%), Positives = 214/352 (60%), Gaps = 18/352 (5%) Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 IE + F + + + E L ++ ++ ID + A ++++ ++ RP + + VK Sbjct: 8 IEYQLFSEVREMVKDYIERLQKLAKSVSEIDCLQSFADISEKNHFIRPTLSEDGSLHVKQ 67 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VEK + QS ++ANDCDL D+N ++ L+TGPNM GKST++RQ AL I Sbjct: 68 GRHPVVEKVMGAQS---YVANDCDL----DENR-EILLITGPNMSGKSTYMRQVALTAIC 119 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+G +VPA A + I D++F+R+G+AD+L +G+STFMVEM+E + + AT S ++ D Sbjct: 120 AQVGCFVPAEEAILPIFDQIFTRIGAADDLIAGQSTFMVEMLEARNAIVHATKDSLILFD 179 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGTAT DG+++A A IEY+HE + L +TH+HELTDL K L N + + N Sbjct: 180 EIGRGTATYDGMALAQAIIEYIHENVHAKTLFSTHYHELTDLEKELSGLQNIHVSAVEEN 239 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE----KLYHHNQKDMRL 852 ++FLHK+ G AD SYGI V +LA LP ++I RA IL+ E K+ + K Sbjct: 240 GKVVFLHKIKEGPADKSYGIHVAELAELPKSLIERASRILEQLENDDKKIIIASVKQPEE 299 Query: 853 YYPEIQ-----TKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + E+Q + K SK KL E I +N+ +M+P+ A+ LY +++ Sbjct: 300 VHEEVQLSMFPVEPEKKASSKETKLLKE-IASMNIMQMTPMDAMNKLYELQS 350 >gi|121719769|ref|XP_001276583.1| DNA mismatch repair protein Msh1, putative [Aspergillus clavatus NRRL 1] gi|119404795|gb|EAW15157.1| DNA mismatch repair protein Msh1, putative [Aspergillus clavatus NRRL 1] Length = 987 Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 139/352 (39%), Positives = 205/352 (58%), Gaps = 9/352 (2%) Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 L +K LG+ V S +K LE + + + F +L R+ A Sbjct: 625 LSLKWTPGLGHICHVKGVKIS--QKSLEELGVTRNVSSTKSTRSFYLPAWTELGGRLDRA 682 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNST 610 E FE L +I + + V+ +D+ + A LA EQ RP++ N T Sbjct: 683 KMQIRQEEQAIFEDLRRDVILNLVKIRRNAAVMDELDVGCSFATLAHEQRLVRPVLTNGT 742 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 + + GRHP V+ L++Q + F++NDC L P+ ++WL+TGPNM GKSTFLRQN Sbjct: 743 SHRIIGGRHPTVKLGLEEQGRR-FVSNDCFLGEPD-----RIWLITGPNMAGKSTFLRQN 796 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 ALI I+AQ+GS+VPA YA IG+VD++FSR+G+AD+L +STFMVEM+ETA+IL QAT + Sbjct: 797 ALITILAQVGSFVPAEYAEIGVVDQIFSRIGAADDLFRDQSTFMVEMLETATILKQATAR 856 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL 790 SFVI+DE+GRGT DG ++++A + +LH N CR L ATHFH L D++ + Sbjct: 857 SFVIMDEVGRGTTPEDGTAVSFACLHHLHYRNNCRTLFATHFHALADMTHDFEALGRYCT 916 Query: 791 QVSDSNEG-IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 V +S G F+H++ G+ S+ ++V +LAGLP + A+ + +T K Sbjct: 917 DVKESASGSFSFVHRLRKGVNRDSHALKVAQLAGLPKETLEMAHRVRQTLSK 968 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 98/405 (24%), Positives = 174/405 (42%), Gaps = 65/405 (16%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 + ++ R+G FYEL+F+ A + L + L + + G + M G P + +++ L++ Sbjct: 109 NCVILTRVGGFYELYFEQAEELAPLLNLKLAVKKTNAGP-VSMAGFPFFQLDRFLKTLVQ 167 Query: 101 -IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVA-- 157 + +AI E+ + E K RG L R V R++TPGTL +++ + P ++N+L+A+ Sbjct: 168 DLNKYVAISEEFANGAEDKARGGL-LFDRRVARVITPGTLIDEKFMDPAENNFLLAIQLD 226 Query: 158 ---------RIRTEWA--------------IAWIDISTGIFKISTSNHDRLISDIMRIDP 194 + R E + ++W D+STG F ++ L S I RI Sbjct: 227 VPALKAQLEQQRDELSAQQHVLPSTSQRVGLSWSDLSTGDFFTQSTTPQMLPSAIARIGA 286 Query: 195 REIIFSE--KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS- 251 REI+ + ++L E + L + FF I+ + + G Sbjct: 287 REILVDQDLQDLIGQELQLLIGHDHRLM-----TFFQFPKEILPISQWGPMLEAPLAGQT 341 Query: 252 ---FSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-S 307 F+Q E A + + YI+ + + P R + ++ ID + LEIL T Sbjct: 342 SDPFTQEEVAAGYSLLEYIRVQLQGSNIKLQPPRRRHLDESMSIDRNSLRGLEILETARD 401 Query: 308 GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI 367 G + SLL + IN RLD ++ F+ + L + I ++ Sbjct: 402 GFGKGSLLHAM-------------------------INERLDLVSVFLDDGDLRDGIVQL 436 Query: 368 LKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKND 412 LK S D R + + +GRG+P D+ + I++ I + D Sbjct: 437 LKRSYDSQRLVQKFTLGRGDPDDLICLAKAIQASEEIKRVLSNRD 481 >gi|47092692|ref|ZP_00230478.1| DNA mismatch repair protein MutS [Listeria monocytogenes str. 4b H7858] gi|47018880|gb|EAL09627.1| DNA mismatch repair protein MutS [Listeria monocytogenes str. 4b H7858] Length = 348 Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 136/351 (38%), Positives = 215/351 (61%), Gaps = 16/351 (4%) Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E + F + + + E L ++ ++ ID + A ++++ ++ RP + + VK Sbjct: 3 LEYQLFSEVREMVKDYIERLQKLAKSVSEIDCLQSFADISEKNHFIRPTLSEDGSLHVKQ 62 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRHP+VEK + QS ++ANDCDL D+N ++ L+TGPNM GKST++RQ AL I Sbjct: 63 GRHPVVEKVMGAQS---YVANDCDL----DENR-EILLITGPNMSGKSTYMRQVALTAIC 114 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+G +VPA A + I D++F+R+G+AD+L +G+STFMVEM+E + + AT S ++ D Sbjct: 115 AQVGCFVPAEEAILPIFDQIFTRIGAADDLIAGQSTFMVEMLEARNAIVHATKDSLILFD 174 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 EIGRGTAT DG+++A A IEY+HE + L +TH+HELTDL K L N + + N Sbjct: 175 EIGRGTATYDGMALAQAIIEYIHENVHAKTLFSTHYHELTDLEKELSGLQNIHVSAVEEN 234 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE----KLYHHNQKDMRL 852 ++FLHK+ G AD SYGI V +LA LP ++I RA IL+ E K+ + K Sbjct: 235 GKVVFLHKIKEGPADKSYGIHVAELAELPKSLIERASRILEQLENDDKKIIIASVKQPEE 294 Query: 853 YYPEIQTK----ESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 + E+Q E + +S + +++I +N+ +M+P+ A+ LY +++ Sbjct: 295 VHEEVQLSMFPVEPEKKVSSKETKLLKEIASMNIMQMTPMDAMNKLYELQS 345 >gi|83765586|dbj|BAE55729.1| unnamed protein product [Aspergillus oryzae] Length = 962 Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 125/275 (45%), Positives = 182/275 (66%), Gaps = 7/275 (2%) Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 FE L +I + + V+ +D++ + A LA+EQ RPI+ T+ + GRHP Sbjct: 666 FERLRREVILNLVKIRRNAAVMDELDVACSFATLAQEQRLVRPILTKGTSHKIVGGRHPT 725 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 V+ L++Q + F++NDC L + ++WL+TGPNM GKSTFLRQNALI I+AQ+GS Sbjct: 726 VKLGLEEQGRR-FVSNDCFLG-----DEERIWLITGPNMAGKSTFLRQNALITILAQVGS 779 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA YA IGIVD++FSR+G+AD+L +STFMVEM+ETA+IL QAT++SFVI+DE+GRG Sbjct: 780 FVPAEYAEIGIVDQIFSRIGAADDLFRDQSTFMVEMLETAAILKQATSRSFVIMDEVGRG 839 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG-II 800 T DG ++++A + +LH NRCR L ATHFHEL D++ V ++ G Sbjct: 840 TTPEDGTAVSFACLHHLHYRNRCRTLFATHFHELADMTHDFDALGRYCTDVKETASGSFS 899 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI 835 F+H++ G+ S+ ++V +LAGLP V+ A + Sbjct: 900 FVHRLRKGVNRESHALKVAQLAGLPKEVLEMARSV 934 Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 107/393 (27%), Positives = 179/393 (45%), Gaps = 33/393 (8%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 + ++ R+G FYEL+F+ A + L I L + G +PM G P + +++ L++ Sbjct: 61 NCVILTRVGGFYELYFEQAEELAPLLNIKLASKKTSAGP-VPMAGFPFFQLDRFLKTLVQ 119 Query: 101 -IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAV--- 156 + +AI E+ +E K R L R V R++TPGTL +++ + P ++N+L+A+ Sbjct: 120 DLNKYVAISEEFAHGVEDKARTGGLLFDRKVARIITPGTLIDEKFMDPAENNFLLAIYID 179 Query: 157 -----ARIRTEW---------------AIAWIDISTGIFKISTSNHDRLISDIMRIDPRE 196 A++ ++W+D+STG F ++ L S I RI RE Sbjct: 180 EPSLKAQLEQHGVSSHQHVLSSASQPVGLSWLDLSTGDFFTQSTTAQMLPSAIARIGARE 239 Query: 197 IIFSE--KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVD--TFGSF 252 I+ ++L E + L + P F I D V + SF Sbjct: 240 ILVDRGIQDLIGQELQLLVGHDHRLMTFFP---FPQDILPMSQWDSMLEAPVSPKSIKSF 296 Query: 253 SQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSRE 311 + E A + YI+ + P R + ++ ID + LEIL T G + Sbjct: 297 TPEETAAGYNLLEYIRVQLQGLDLKLQPPRRRHLSESMNIDRNSLRGLEILETARDGFGK 356 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 SLL + + T +G RL +R++SP T IN RLD ++ FI N L + + ++LK S Sbjct: 357 GSLLHAVRRTSTKSGARLLRDRLSSPSTSLRVINERLDLVSGFIANSELRDSVTQLLKRS 416 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 D R + + +GRG+P D+ + I + I Sbjct: 417 YDAQRLVQKFTLGRGDPDDLICLSRAIEASKEI 449 >gi|238483249|ref|XP_002372863.1| DNA mismatch repair protein Msh1, putative [Aspergillus flavus NRRL3357] gi|220700913|gb|EED57251.1| DNA mismatch repair protein Msh1, putative [Aspergillus flavus NRRL3357] Length = 962 Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 125/275 (45%), Positives = 182/275 (66%), Gaps = 7/275 (2%) Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 FE L +I + + V+ +D++ + A LA+EQ RPI+ T+ + GRHP Sbjct: 666 FERLRREVILNLVKIRRNAAVMDELDVACSFATLAQEQRLVRPILTKGTSHKIVGGRHPT 725 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 V+ L++Q + F++NDC L + ++WL+TGPNM GKSTFLRQNALI I+AQ+GS Sbjct: 726 VKLGLEEQGRR-FVSNDCFLG-----DEERIWLITGPNMAGKSTFLRQNALITILAQVGS 779 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA YA IGIVD++FSR+G+AD+L +STFMVEM+ETA+IL QAT++SFVI+DE+GRG Sbjct: 780 FVPAEYAEIGIVDQIFSRIGAADDLFRDQSTFMVEMLETAAILKQATSRSFVIMDEVGRG 839 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG-II 800 T DG ++++A + +LH NRCR L ATHFHEL D++ V ++ G Sbjct: 840 TTPEDGTAVSFACLHHLHYRNRCRTLFATHFHELADMTHDFDALGRYCTDVKETASGSFS 899 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI 835 F+H++ G+ S+ ++V +LAGLP V+ A + Sbjct: 900 FVHRLRKGVNRESHALKVAQLAGLPKEVLEMARSV 934 Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 107/393 (27%), Positives = 180/393 (45%), Gaps = 33/393 (8%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 + ++ R+G FYEL+F+ A + L I L + G +PM G P + +++ L++ Sbjct: 61 NCVILTRVGGFYELYFEQAEELAPLLNIKLASKKTSAGP-VPMAGFPFFQLDRFLKTLVQ 119 Query: 101 -IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAV--- 156 + +AI E+ +E K R L R V R++TPGTL +++ + P ++N+L+A+ Sbjct: 120 DLNKYVAISEEFAHGVEDKARTGGLLFDRKVARIITPGTLIDEKFMDPAENNFLLAIYID 179 Query: 157 -----ARIRTEW---------------AIAWIDISTGIFKISTSNHDRLISDIMRIDPRE 196 A++ ++W+D+STG F ++ L S I RI RE Sbjct: 180 EPSLKAQLEQHGVSSHQHVLSSASQPVGLSWLDLSTGDFFTQSTTAQMLPSAIARIGARE 239 Query: 197 IIFSE--KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVD--TFGSF 252 I+ ++L E + L + P F I D V + SF Sbjct: 240 ILVDRGIQDLIGQELQLLVGHDHRLMTFFP---FPQDILPMSQWDSMLEAPVSPKSIKSF 296 Query: 253 SQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSRE 311 + E A + + YI+ + P R + ++ ID + LEIL T G + Sbjct: 297 TPEETAAGYSLLEYIRVQLQGLDLKLQPPRRRHLSESMNIDRNSLRGLEILETARDGFGK 356 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 SLL + + T +G RL +R++SP T IN RLD ++ FI N L + + ++LK S Sbjct: 357 GSLLHAVRRTSTKSGARLLRDRLSSPSTSLRVINERLDLVSGFIANSELRDSVTQLLKRS 416 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 D R + + +GRG+P D+ + I + I Sbjct: 417 YDAQRLVQKFTLGRGDPDDLICLSRAIEASKEI 449 >gi|6320302|ref|NP_010382.1| Msh6p [Saccharomyces cerevisiae S288c] gi|3024187|sp|Q03834|MSH6_YEAST RecName: Full=DNA mismatch repair protein MSH6; AltName: Full=MutS protein homolog 6; AltName: Full=Postmeiotic segregation protein 3 gi|633631|emb|CAA87671.1| probable DNA repair protein [Saccharomyces cerevisiae] gi|285811118|tpg|DAA11942.1| TPA: Msh6p [Saccharomyces cerevisiae S288c] Length = 1242 Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 232/886 (26%), Positives = 405/886 (45%), Gaps = 117/886 (13%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP +QY EIKS D +VF++ G F+EL+ DALLA+ + + G+ ++ + G Sbjct: 312 TPFEKQYWEIKSKMWDCIVFFKKGKFFELYEKDALLANALFDLKIAGGGR---ANMQLAG 368 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR-GNKSLVRRNVVRLVTPGTLTEDQL 144 +P + ++ + I++G+++A +Q ES L + R G+K +V+R + ++T GTLT+ + Sbjct: 369 IPEMSFEYWAAQFIQMGYKVAKVDQRESMLAKEMREGSKGIVKRELQCILTSGTLTDGDM 428 Query: 145 LSPTDSNYLMA-------------------VARIRTE-WAIAWIDISTGIFKI----STS 180 L + + +A V ++ T+ + A+ID +TG ++ S Sbjct: 429 LHSDLATFCLAIREEPGNFYNETQLDSSTIVQKLNTKIFGAAFIDTATGELQMLEFEDDS 488 Query: 181 NHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAV---AQPNVFFDHSISESRI 237 +L + + ++ P E++ LS TL N V + PN F+ + Sbjct: 489 ECTKLDTLMSQVRPMEVVMERNNLS---------TLANKIVKFNSAPNAIFNEVKAGEEF 539 Query: 238 AD----YYNITTVDTFG----------SFSQVEKTAAAAAIS--------YIKKTQMVNK 275 D Y I + + F S+ K +A +++ Sbjct: 540 YDCDKTYAEIISSEYFSTEEDWPEVLKSYYDTGKKVGFSAFGGLLYYLKWLKLDKNLISM 599 Query: 276 PTIGYPEREDIQSTLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERI 334 I + Q ++ +D NLEI + GS + +L K + +IT G R+ + + Sbjct: 600 KNIKEYDFVKSQHSMVLDGITLQNLEIFSNSFDGSDKGTLFKLFNRAITPMGKRMMKKWL 659 Query: 335 ASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVI 394 PL I +RLDS++ +Q+ L ++ PD+ R L+R+ + KD + Sbjct: 660 MHPLLRKNDIESRLDSVDSLLQDITLREQLEITFSKLPDLERMLARIHSRTIKVKDFEKV 719 Query: 395 RDGIRSGINILNLFLKNDLPEEL--------RGAVEKLKKLPQSLEKTLSSMLSDDLPTF 446 + I + + NDL ++ G VE +K + E+ + + +P Sbjct: 720 ITAFETIIELQDSLKNNDLKGDVSKYISSFPEGLVEAVKSWTNAFERQKAINENIIVPQR 779 Query: 447 KRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVT 506 D F D S+D + L D+ I+ + Y ++ K N++ K + Y IE+ Sbjct: 780 GFDIEF-----DKSMDRIQELEDELMEIL----MTYRKQFKCSNIQYKDSGKEIYTIEIP 830 Query: 507 SSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILS 566 S+ K++ S ++ R+ + E+ L + A +E E L Sbjct: 831 ISAT----KNVPS--NWVQMAANKTYKRYYSDEVRALARSMAEAKEIHKTLE----EDLK 880 Query: 567 NAIIEQSESLDNA---SQVIAIIDISIALAILAKEQNY-----CRPII----DNSTN--- 611 N + ++ ++ N + AI +I LAI + Y CRP I D+ TN Sbjct: 881 NRLCQKFDAHYNTIWMPTIQAISNIDCLLAI-TRTSEYLGAPSCRPTIVDEVDSKTNTQL 939 Query: 612 --FI-VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 F+ K RHP L ++K FI ND +L K +L LLTG N GKST LR Sbjct: 940 NGFLKFKSLRHPCF--NLGATTAKDFIPNDIELG----KEQPRLGLLTGANAAGKSTILR 993 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 + VIMAQMG YVP A + +D++ +R+G+ DN+ G+STF VE+ ET IL+ AT Sbjct: 994 MACIAVIMAQMGCYVPCESAVLTPIDRIMTRLGANDNIMQGKSTFFVELAETKKILDMAT 1053 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH-- 786 N+S +++DE+GRG ++ DG +IA + + ++ + G ATH+ L K + Sbjct: 1054 NRSLLVVDELGRGGSSSDGFAIAESVLHHVATHIQSLGFFATHYGTLASSFKHHPQVRPL 1113 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 ++ V ++ + FL+K++ G ++ S+G+ V + G+ +I A Sbjct: 1114 KMSILVDEATRNVTFLYKMLEGQSEGSFGMHVASMCGISKEIIDNA 1159 >gi|307172014|gb|EFN63608.1| Probable DNA mismatch repair protein Msh6 [Camponotus floridanus] Length = 1117 Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 248/929 (26%), Positives = 415/929 (44%), Gaps = 150/929 (16%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 L + TP MRQ+ E+KS + D ++F+++G FYEL+ DA++ L +T RG+ Sbjct: 204 LNNQTPAMRQWWELKSKHFDCVLFFKVGKFYELYHMDAVIGVNELSLTYM-RGEFAHSGF 262 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNK--------SLVRRNVVRL 133 P G ++A+ LI+ G+++A EQ E+P R +K +V+R + ++ Sbjct: 263 PEIGYGRYSAS-----LIERGYKVARVEQTENPEMMATRCSKMIKTTKFDKVVKREICQI 317 Query: 134 VTPGTLTEDQL---LSPTDSNYLMAV------ARIRTEWAIAWIDISTGIFKISTSNHD- 183 T GT L S +SNYL+++ + + + + +ID + G F +S + D Sbjct: 318 STRGTRVYTPLDVEASSPNSNYLLSLVERCDPGQTNSSFGVCFIDTTIGEFNLSQFDDDY 377 Query: 184 ---RLISDIMRIDPREIIFSEKELS---------------------HAEYKSLFETLGNV 219 RL++ + P +I+ LS A++ S TL N+ Sbjct: 378 CNSRLLTLLAHHPPMHVIYERGNLSRKILQLINNTLPAALKEPLQREAQFWSATTTLKNL 437 Query: 220 AVAQPNVFFDHSISE----SRIADYYNITTVDTFGSFSQVEKTAAAAAIS--------YI 267 + N F S+ + + Y N D+ G K A A+ ++ Sbjct: 438 H--EGNYFKKEEDSDFAWPADLKSYLN--EGDSLGLTPASNKELAVHALGGCVYLLKDFL 493 Query: 268 KKTQMVNKPTIGYPEREDIQS-----------TLFIDSAARSNLEILRTLSGSREQSLLK 316 + Q++ + D + T+ ID+ NL I E SL Sbjct: 494 LEQQLLAQGCFNTYIPPDFSAANNRAGLSYTNTMVIDAVTIKNLRIFG------ENSLNS 547 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR 376 +D+ T G RL E I P I R ++ + +I + IL + PD+ R Sbjct: 548 VLDHCCTAFGKRLLREWICRPSCRKDIIIKRQKAVQELVDRIDMIQSARAILSTLPDLER 607 Query: 377 SLSRLKIG------RGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS 430 LS++ + P A++ +G I+ F E V K +L Sbjct: 608 LLSKIHAQGNAAKMKNHPDGRAIMFEGPTYSKRIIVEFTMTLAKFE---EVLKFIELFND 664 Query: 431 LEKTLSSMLSD-----DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE 485 E L S + D P + + + D + + K + A L AE Sbjct: 665 FESNLISHCTQYEPNGDFPQLREILDYFKTAFDHEEAKKQGCIVPKKGVDAEYDLVLAEL 724 Query: 486 TK--------IKNLKIKHNNNLGYF--------IEVTSSSASVLKK--DLESKDRFIHRQ 527 K ++ K + N+ +F IEV S + +L+S+ + R Sbjct: 725 AKNKKDLDKYLEKQKQHFDANISFFGTDKKRYQIEVPESRVKKVGPGYELQSQRKGFKRY 784 Query: 528 TMSNLTRFTTLELIDLENR--ITNATNSALLIEL-ESFEILSNAIIEQSESLDNASQVIA 584 + ++ E+R + N + + E +++ AI + +A Sbjct: 785 YTAEAKELLARQINTEEHRDKVLKDLNRRIFAQFSEKYDMWHRAIYK-----------VA 833 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTN---FI-VKDGRHPIVEKTLKQQSSKPFIANDCD 640 +D+ I+LA A+ + C P I + + FI ++DG+HP + S FI ND Sbjct: 834 TMDVLISLADYARNGDMCIPEIHDGLDGEIFIKIRDGKHPCI-------ISDNFIPNDTL 886 Query: 641 LSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRV 700 L+ ++ L +LTGPNMGGKST +RQ LI IMAQ+GSYVPAS I +VD++F+R+ Sbjct: 887 LAT---DDTASLMILTGPNMGGKSTLMRQVGLITIMAQIGSYVPASSCCITLVDRIFTRL 943 Query: 701 GSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHE 760 G+ D++ +G+STF+VE+ ETA++L AT S V+LDE+GRGT+T DG +IA + ++ L + Sbjct: 944 GANDDILTGQSTFLVELNETATMLQHATPYSLVLLDELGRGTSTYDGTAIAASVVDALTK 1003 Query: 761 TNRCRGLLATHFHELTDLSKSLKRF---HNATL-----QVSDSNEGIIFLHKVIPGIADH 812 +CR L +TH+H L + K+ K H A + + + S E + FL+K+ G Sbjct: 1004 L-KCRTLFSTHYHSLVEDYKTNKEVTLAHMACMVETGEEENVSEETVTFLYKLSEGACPK 1062 Query: 813 SYGIQVGKLAGLPNTVISRAYDILKTFEK 841 SYG +LAG+P+ + +A++I E+ Sbjct: 1063 SYGFNAARLAGIPSIITKKAHEIASKMEQ 1091 >gi|21951830|gb|AAM82361.1| mismatch repair protein MutS [Salmonella enterica] Length = 376 Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 137/348 (39%), Positives = 207/348 (59%), Gaps = 15/348 (4%) Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY+I+++ + + + ++ RQT+ N R+ EL + E+++ + A Sbjct: 1 YNAVHGYYIQISRGQSHL------APINYVRRQTLKNAERYIIPELKEYEDKVLTSKGKA 54 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV 614 L +E + ++ L + ++ L ++ +A +D+ + LA A NY P + + Sbjct: 55 LALEKQLYDELFDLLLPHLADLQQSASALAELDVLVNLAERAYTLNYTCPTFTDKPGIRI 114 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 +GRHP+VE+ L + PFIAN +LS ++ ++TGPNMGGKST++RQ ALI Sbjct: 115 IEGRHPVVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTALIA 165 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++A +GSYVPA IG +D++F+ VG+AD+LASGRSTFMVEM ETA+IL+ AT S V+ Sbjct: 166 LLAWIGSYVPAHNVEIGPIDRIFTLVGAADDLASGRSTFMVEMTETANILHNATENSLVL 225 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSD 794 +DEIGRGT+T DGLS+AWA E L + L ATH+ ELT L + ++ N L + Sbjct: 226 MDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALE 285 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 + I F+H V G A SYG+ V LAG+P VI RA L+ E + Sbjct: 286 HGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 333 >gi|317139745|ref|XP_001817731.2| DNA mismatch repair protein Msh1 [Aspergillus oryzae RIB40] Length = 1010 Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 141/360 (39%), Positives = 209/360 (58%), Gaps = 9/360 (2%) Query: 477 SLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFT 536 SL + + L +K LG+ V + S ++ LE + T + F Sbjct: 631 SLTQRLRDSVGSSTLTLKWTPGLGHICHVKGTKVS--QQALEELGVTRNVSTTKSTRSFY 688 Query: 537 TLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILA 596 +L +RI E FE L +I + + V+ +D++ + A LA Sbjct: 689 LPAWTELGSRIDQVKLQIRQEEQLIFERLRREVILNLVKIRRNAAVMDELDVACSFATLA 748 Query: 597 KEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLT 656 +EQ RPI+ T+ + GRHP V+ L++Q + F++NDC L + ++WL+T Sbjct: 749 QEQRLVRPILTKGTSHKIVGGRHPTVKLGLEEQGRR-FVSNDCFLG-----DEERIWLIT 802 Query: 657 GPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVE 716 GPNM GKSTFLRQNALI I+AQ+GS+VPA YA IGIVD++FSR+G+AD+L +STFMVE Sbjct: 803 GPNMAGKSTFLRQNALITILAQVGSFVPAEYAEIGIVDQIFSRIGAADDLFRDQSTFMVE 862 Query: 717 MIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELT 776 M+ETA+IL QAT++SFVI+DE+GRGT DG ++++A + +LH NRCR L ATHFHEL Sbjct: 863 MLETAAILKQATSRSFVIMDEVGRGTTPEDGTAVSFACLHHLHYRNRCRTLFATHFHELA 922 Query: 777 DLSKSLKRFHNATLQVSDSNEG-IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI 835 D++ V ++ G F+H++ G+ S+ ++V +LAGLP V+ A + Sbjct: 923 DMTHDFDALGRYCTDVKETASGSFSFVHRLRKGVNRESHALKVAQLAGLPKEVLEMARSV 982 Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 107/393 (27%), Positives = 179/393 (45%), Gaps = 33/393 (8%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 + ++ R+G FYEL+F+ A + L I L + G +PM G P + +++ L++ Sbjct: 109 NCVILTRVGGFYELYFEQAEELAPLLNIKLASKKTSAGP-VPMAGFPFFQLDRFLKTLVQ 167 Query: 101 -IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAV--- 156 + +AI E+ +E K R L R V R++TPGTL +++ + P ++N+L+A+ Sbjct: 168 DLNKYVAISEEFAHGVEDKARTGGLLFDRKVARIITPGTLIDEKFMDPAENNFLLAIYID 227 Query: 157 -----ARIRTEW---------------AIAWIDISTGIFKISTSNHDRLISDIMRIDPRE 196 A++ ++W+D+STG F ++ L S I RI RE Sbjct: 228 EPSLKAQLEQHGVSSHQHVLSSASQPVGLSWLDLSTGDFFTQSTTAQMLPSAIARIGARE 287 Query: 197 IIFSE--KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVD--TFGSF 252 I+ ++L E + L + P F I D V + SF Sbjct: 288 ILVDRGIQDLIGQELQLLVGHDHRLMTFFP---FPQDILPMSQWDSMLEAPVSPKSIKSF 344 Query: 253 SQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSRE 311 + E A + YI+ + P R + ++ ID + LEIL T G + Sbjct: 345 TPEETAAGYNLLEYIRVQLQGLDLKLQPPRRRHLSESMNIDRNSLRGLEILETARDGFGK 404 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 SLL + + T +G RL +R++SP T IN RLD ++ FI N L + + ++LK S Sbjct: 405 GSLLHAVRRTSTKSGARLLRDRLSSPSTSLRVINERLDLVSGFIANSELRDSVTQLLKRS 464 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 D R + + +GRG+P D+ + I + I Sbjct: 465 YDAQRLVQKFTLGRGDPDDLICLSRAIEASKEI 497 >gi|256269843|gb|EEU05102.1| Msh6p [Saccharomyces cerevisiae JAY291] Length = 1242 Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 232/886 (26%), Positives = 405/886 (45%), Gaps = 117/886 (13%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP +QY EIKS D +VF++ G F+EL+ DALLA+ + + G+ ++ + G Sbjct: 312 TPFEKQYWEIKSKMWDCIVFFKKGKFFELYEKDALLANALFDLKIAGGGR---ANMQLAG 368 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR-GNKSLVRRNVVRLVTPGTLTEDQL 144 +P + ++ + I++G+++A +Q ES L + R G+K +V+R + ++T GTLT+ + Sbjct: 369 IPEMSFEYWAAQFIQMGYKVAKVDQRESMLAKEMREGSKGIVKRELQCILTSGTLTDGDM 428 Query: 145 LSPTDSNYLMA-------------------VARIRTE-WAIAWIDISTGIFKI----STS 180 L + + +A V ++ T+ + A+ID +TG ++ S Sbjct: 429 LHSDLATFCLAIREEPGNFYNETQLDSSTIVQKLNTKIFGAAFIDTATGELQMLEFEDDS 488 Query: 181 NHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAV---AQPNVFFDHSISESRI 237 +L + + ++ P E++ LS TL N V + PN F+ + Sbjct: 489 ECTKLDTLMSQVRPMEVVMERNNLS---------TLANKIVKFNSAPNAIFNEVKAGEEF 539 Query: 238 AD----YYNITTVDTFG----------SFSQVEKTAAAAAIS--------YIKKTQMVNK 275 D Y I + + F S+ K +A +++ Sbjct: 540 YDCDKTYAEIISSEYFSTEEDWPEVLKSYYDTGKKVGFSAFGGLLYYLKWLKLDKNLISM 599 Query: 276 PTIGYPEREDIQSTLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERI 334 I + Q ++ +D NLEI + GS + +L K + +IT G R+ + + Sbjct: 600 KNIKEYDFVKSQHSMVLDGITLQNLEIFSNSFDGSDKGTLFKLFNRAITPMGKRMMKKWL 659 Query: 335 ASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVI 394 PL I +RLDS++ +Q+ L ++ PD+ R L+R+ + KD + Sbjct: 660 MHPLLRKNDIESRLDSVDSLLQDITLREQLEITFSKLPDLERMLARIHSRTIKVKDFEKV 719 Query: 395 RDGIRSGINILNLFLKNDLPEEL--------RGAVEKLKKLPQSLEKTLSSMLSDDLPTF 446 + I + + NDL ++ G VE +K + E+ + + +P Sbjct: 720 ITAFETIIELQDSLKNNDLKGDVSKYISSFPEGLVEAVKSWTNAFERQKAINENIIVPQR 779 Query: 447 KRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVT 506 D F D S+D + L D+ I+ + Y ++ K N++ K + Y IE+ Sbjct: 780 GFDIEF-----DKSMDRIQELEDELMEIL----MTYRKQFKCSNIQYKDSGKEIYTIEIP 830 Query: 507 SSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILS 566 S+ K++ S ++ R+ + E+ L + A +E E L Sbjct: 831 ISAT----KNVPS--NWVQMAANKTYKRYYSDEVRALARSMAEAKEIHKTLE----EDLK 880 Query: 567 NAIIEQSESLDNA---SQVIAIIDISIALAILAKEQNY-----CRPII----DNSTN--- 611 N + ++ ++ N + AI +I LAI + Y CRP I D+ TN Sbjct: 881 NRLCQKFDAHYNTIWIPTIQAISNIDCLLAI-TRTSEYLGAPSCRPTIVDEVDSKTNTQL 939 Query: 612 --FI-VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 F+ K RHP L ++K FI ND +L K +L LLTG N GKST LR Sbjct: 940 NGFLKFKSLRHPCF--NLGATTAKDFIPNDIELG----KEQPRLGLLTGANAAGKSTILR 993 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 + VIMAQMG YVP A + +D++ +R+G+ DN+ G+STF VE+ ET IL+ AT Sbjct: 994 MACIAVIMAQMGCYVPCESAVLTPIDRIMTRLGANDNIMQGKSTFFVELAETKKILDMAT 1053 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH-- 786 N+S +++DE+GRG ++ DG +IA + + ++ + G ATH+ L K + Sbjct: 1054 NRSLLVVDELGRGGSSSDGFAIAESVLHHVATHIQSLGFFATHYGTLASSFKHHPQVRPL 1113 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 ++ V ++ + FL+K++ G ++ S+G+ V + G+ +I A Sbjct: 1114 KMSILVDEATRNVTFLYKMLEGQSEGSFGMHVASMCGISKEIIDNA 1159 >gi|70983508|ref|XP_747281.1| DNA mismatch repair protein Msh1 [Aspergillus fumigatus Af293] gi|66844907|gb|EAL85243.1| DNA mismatch repair protein Msh1, putative [Aspergillus fumigatus Af293] gi|159123714|gb|EDP48833.1| DNA mismatch repair protein Msh1, putative [Aspergillus fumigatus A1163] Length = 1018 Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 153/421 (36%), Positives = 233/421 (55%), Gaps = 11/421 (2%) Query: 413 LPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSK 472 + E L G VE L K ++ S ++++ D +R A A+L E D+ + Sbjct: 580 MSEGLPGEVETLPKKVRAKNSDQSKTSTEEITA--PDTWIMRRNASAALLELHESLDRLQ 637 Query: 473 RIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNL 532 A L + E L ++ + LGY V A + ++ LE + + + Sbjct: 638 DEKARLTQRLREAVGSSALSLRWTSGLGYICHV--KGAKISQQSLEELGVTRNVSSTKST 695 Query: 533 TRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIAL 592 F L +R+ E FE L +I + + V+ +D++ + Sbjct: 696 RSFYLPAWTALGDRMDQVKVQIRQEEQAIFETLRREVILNLVKIRRNAAVMDELDVACSF 755 Query: 593 AILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKL 652 A LA+EQ RPI+ + + GRHP V+ L++Q + F++NDC L +S ++ Sbjct: 756 ATLAEEQRLVRPILTSGVTHKIVGGRHPTVKLGLEEQG-RQFVSNDCFLG-----DSERI 809 Query: 653 WLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRST 712 WL+TGPNM GKSTFLRQNALI I+AQ+GS+VPA YA IGIVD++FSR+G+AD+L +ST Sbjct: 810 WLITGPNMAGKSTFLRQNALITILAQVGSFVPAEYAEIGIVDQIFSRIGAADDLFRDQST 869 Query: 713 FMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHF 772 FMVEM+ETA+IL QAT +SFVI+DE+GRGT DG ++++A + +LH N+CR L ATHF Sbjct: 870 FMVEMLETATILKQATARSFVIMDEVGRGTTPEDGTAVSFACLHHLHYRNKCRTLFATHF 929 Query: 773 HELTDLSKSLKRFHNATLQVSDSNEG-IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISR 831 H L D++ + V +S G F+H++ G+ +S+ ++V +LAGLP + Sbjct: 930 HALADMTDDFEALGRYCTDVKESASGSFSFVHRLRKGVNRNSHALKVAQLAGLPKETLEM 989 Query: 832 A 832 A Sbjct: 990 A 990 Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 125/469 (26%), Positives = 219/469 (46%), Gaps = 59/469 (12%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 + ++ R+G FYEL+F+ A + L + L + G +PM G P + +++ L++ Sbjct: 113 NCVILTRVGGFYELYFEQAEELAPLLNLKLAVKRTSAGP-VPMAGFPFFQLDRFLKILVQ 171 Query: 101 -IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAV--- 156 + +AI E+ + E K RG L R V R++TPGTL +++ + P+++N+L+AV Sbjct: 172 DLNKYVAISEEFANAAEDKARGGL-LFDRRVARIITPGTLIDEKFMDPSENNFLLAVYID 230 Query: 157 -ARIRTEW---------------------AIAWIDISTGIFKISTSNHDRLISDIMRIDP 194 A ++ + ++W+D+STG F ++ L S I RI Sbjct: 231 VAALKAQLEQQEGNLSAQQHILSSASQHVGLSWLDLSTGDFFTQSTTTQMLPSAIARIGA 290 Query: 195 REIIFSEK--ELSHAEYKSLFETLGNVAV--AQPNVFFD----HSISESRIADYYNITTV 246 REI+ +K +L E + L + A P+ S+ E+++AD + Sbjct: 291 REILVDQKLQDLIGQELQLLVGHDHRLMTFFAYPSKILPIAQWSSVLEAQVADQDS---- 346 Query: 247 DTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL 306 +F+ E A + + YI+ + P R + ++ ID + LEIL T Sbjct: 347 ---DAFTPEEVAAGYSLLEYIRVQLQGLNLKLQPPRRRHLNESMNIDRNSLKGLEILETA 403 Query: 307 -SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQ 365 G + SLL + + T +G RL +R+ SP T IN RLD ++ F++N L + + Sbjct: 404 RDGFGKGSLLHAVRRTSTKSGARLLRDRLTSPSTSLLVINERLDLVSVFLENSDLRDSVI 463 Query: 366 KILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLK 425 ++LK S D R + + +GRG+ D+ + I++ I + D G +E L Sbjct: 464 QLLKRSYDAQRLVQKFTLGRGDADDLICLARAIQASREIKMVLSSQD-----NGPLEALP 518 Query: 426 KLPQS-LEKTLSSM---LSDDLPTFKRDGGFLRDGADASLDETRSLRDQ 470 + + +++LS+M L D PT L D A++DE L+ Q Sbjct: 519 HIQSNHAKRSLSAMTGRLCLDGPT------ALADRISAAIDEEGLLQKQ 561 >gi|121711343|ref|XP_001273287.1| DNA mismatch repair protein Msh3, putative [Aspergillus clavatus NRRL 1] gi|190359844|sp|A1CDD4|MSH3_ASPCL RecName: Full=DNA mismatch repair protein msh3; AltName: Full=MutS protein homolog 3 gi|119401438|gb|EAW11861.1| DNA mismatch repair protein Msh3, putative [Aspergillus clavatus NRRL 1] Length = 1130 Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 241/905 (26%), Positives = 429/905 (47%), Gaps = 139/905 (15%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK---------- 75 TP+ +Q IEIK + D+++ +G Y F +DA +A++ L I GK Sbjct: 219 TPLEKQVIEIKRKHMDTVLVIEVGYKYRFFGEDARIAAKELSIVCIP-GKMRFDEHPSEA 277 Query: 76 HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLV 134 HL + +PVH + ++++L+ G+++ + Q+E + L+A + R + L Sbjct: 278 HLDR-FASASIPVHRLHVHVKRLVAAGYKVGVVRQLETAALKAAGDNRNAPFSRKLTNLY 336 Query: 135 TPGTLTED--QLLSPTDS---------NYLMAVARIRTEWAIAWIDISTGIFKISTSNHD 183 T GT +D L PT + YL+ + A W N + Sbjct: 337 TKGTYVDDVEGLEGPTPAASGGASPATGYLLCITETN---AKGW------------GNDE 381 Query: 184 RLISDIMRIDPR--EIIFSEKELSHAEYKSLFET-LGNVAVAQPNVFFDHSISESRIADY 240 R+ I+ + P +II+ + E +S ET L ++A + + + S + ++ + Sbjct: 382 RVHVGIVAVQPNTGDIIYDDFE--DGFMRSEVETRLLHIAPCELVIVGELSKATEKLVQH 439 Query: 241 YNITTVDTFGSFSQVE-----KTAAAAAISYIKK-------------TQMVN--KPTIGY 280 + + ++TFG +VE KTA A + S++ TQ N + + Sbjct: 440 LSGSKLNTFGDKVRVERVGKKKTAVAESHSHVANFYASKLKAASVDDTQTSNLLQKVLTL 499 Query: 281 PEREDIQSTLFIDSAARSNLEILRTLSG------------------------------SR 310 PE+ + + I+ LE + L+ S Sbjct: 500 PEQVTVCLSAMIEHMTEYGLEHIFQLTKYFQHFSSRSHMLLNANTLVSLEIYQNQTDHST 559 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP---ILINPIQKI 367 + SL T+D + T G RL + + PL D +++ R++++ ++NP + + ++++ Sbjct: 560 KGSLFWTLDRTQTRFGQRLLRKWVGRPLLDKSRLEERVNAVE-ELKNPEKTVQVERLKRL 618 Query: 368 L-KSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAV----E 422 L + D+ ++L R+ G+ ++ + +++ I + PE+ A E Sbjct: 619 LGRIKSDLEKNLIRIYYGKCTRPELLTVLQTLQT---IAQEYADVKSPEDNGFASPVLGE 675 Query: 423 KLKKLPQSLEKTLSSMLSDDLPTFKRDGG--FLRDGADASLDETRSLRDQSKRIIASLQL 480 + LP L+ ++ + ++ + D F R+ +ET + + K IAS++ Sbjct: 676 AVASLPTILKDVVAFLNKINMHAARSDDKYEFFRES-----EETDEISEH-KLGIASVEH 729 Query: 481 KYAEETKI-----KNLKIKHNNNLG--YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLT 533 + E + K K+ + + G Y IEV ++S ++ + ++ L+ Sbjct: 730 ELEEHRAVAAGILKWPKVVYVTSSGIEYLIEVENTSNAIKRVPAS----WVKVSGTKKLS 785 Query: 534 RFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALA 593 RF T E+I L + + ++F L I + + Q +A +D ++LA Sbjct: 786 RFHTPEVIQLLRQRDQHKEALAAACDKAFAALLAEIAVNYQLFRDCVQALATLDCLLSLA 845 Query: 594 ILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLW 653 +A + Y +P + T V+ GRHP+VE+ L ++ ND DL D + + Sbjct: 846 AIASQPGYVKPEYTDHTCICVEQGRHPMVEQLLLDS----YVPNDTDL----DTDQTRAL 897 Query: 654 LLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTF 713 L+TGPNMGGKS+++RQ ALI IM Q+GSYVPA A +G++D +F+R+G+ DN+ +G STF Sbjct: 898 LVTGPNMGGKSSYVRQVALIAIMGQIGSYVPARSAKLGMLDAVFTRMGAFDNMLAGESTF 957 Query: 714 MVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFH 773 MVE+ ETA IL QAT +S VILDE+GRGT+T DG++IA A ++Y+ T R L TH+ Sbjct: 958 MVELSETADILKQATPRSLVILDELGRGTSTHDGVAIAQAVLDYMVRTIRSLTLFITHYQ 1017 Query: 774 ELTDLSKSL--KRFHNATLQVSDSNEG----IIFLHKVIPGIADHSYGIQVGKLAGLPNT 827 L+++++S N ++ ++S G I FL++V G+A SYG+ V +LA LP Sbjct: 1018 HLSNMTQSFPDHELRNVHMRFTESGAGQDEEITFLYEVGEGVAHRSYGLNVARLANLPAP 1077 Query: 828 VISRA 832 ++ A Sbjct: 1078 LLDVA 1082 >gi|195021403|ref|XP_001985388.1| GH17031 [Drosophila grimshawi] gi|193898870|gb|EDV97736.1| GH17031 [Drosophila grimshawi] Length = 1201 Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 257/990 (25%), Positives = 442/990 (44%), Gaps = 177/990 (17%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 E+ L S +P +RQ+ +KS N D ++F+++G FYEL+ DA + + LG T ++ Sbjct: 263 EKFLNSLSPGVRQWWILKSDNYDCVLFFKVGKFYELYHSDADVGVKELGFT------YMR 316 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGN-------KSLVRRNVV 131 + G P + + LI G+++A EQ E+P +R +V R + Sbjct: 317 GEFAHSGFPEISFDKMSTILIDRGYKVARVEQTETPDMMTERCKLIKPTKFDKVVAREIC 376 Query: 132 RLVTPGT--LTEDQLLSPT-DSNYLMAVAR----IRTEWAIAWIDISTGIFKISTSNHD- 183 ++ GT + P NY++A+ +++ I +ID S G F + + D Sbjct: 377 QITDRGTQVFGSQCAIGPNHQPNYMLAIVEQDEGTWSKYGICFIDTSIGDFHVGEFDDDK 436 Query: 184 ---RLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQ-PNVFFDHSISESRI-- 237 RL++ + P ++ + LS + L LG + Q P +E + Sbjct: 437 SCSRLLTLLSHHMPVLLLHEKSALSARTQQILRTVLGGILKEQMPATGTQLCSAEKTLKL 496 Query: 238 --------------------------ADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQ 271 D+ +T D + ++ A I YI K + Sbjct: 497 LAERYYAGGGPAENNWPLVLRSMQSDTDHLGLTPADHY----KLALKALGQCIHYIAKCK 552 Query: 272 MVNK--PTIGY-----PER---EDI---------QSTLFIDSAARSNLEILRTLSGSREQ 312 + K P Y P++ E+I +S + +D+ SNL I+ E Sbjct: 553 LEPKVLPMARYQLYVPPDQLQLENIPAALASTLRRSHMVLDATTLSNLRIV-----GEEH 607 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSP 372 SLL T+D T G RL + +P D T + R +I + P + ++ +L P Sbjct: 608 SLLSTLDNCCTKFGKRLLHHWLCAPSCDLTVLRERQQAIGELLSKPDELQQLRALLAPMP 667 Query: 373 DVPRSLSRL------KIGRGEPKDIAVI--------RDGIRSGINILNLFLKNDLPEELR 418 D R L+++ ++ + + D I + +RS ++IL F Sbjct: 668 DFERHLAQIHLFGNKRVAQADHPDSRAIFFEEKLYNKQKLRSFMSILKGF---------- 717 Query: 419 GAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRD----------------------- 455 GA+ +L + + E +L L+ LPT DGG D Sbjct: 718 GALTQLPLMFKDCETSLLQRLTQ-LPT---DGGSFPDLSKQLKFFQHAFDHEAADKTGVV 773 Query: 456 ----GADASLDETR-SLRDQSKRIIASLQLKYAEETKIKNLKIKH--NNNLGYFIEVTSS 508 G D+ DE + + D +R+ L E+ + ++ + ++ Y +EV + Sbjct: 774 APQPGVDSDYDEVQQGIADVEQRLKTYL----TEQERHFGCRVIYFGSDKKRYQLEVPET 829 Query: 509 SASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA--TNSALLIELES--FEI 564 A + K + + ++ R+TT E L + A +A+L +L FE Sbjct: 830 HAHKVNKSYALEGQVRGKKPAR---RYTTAETKALLKDMQQAEEVRNAVLKDLARRLFEK 886 Query: 565 LSNAIIEQSESLDNASQVIAIIDISIALAILAKEQ-NYCRP--IIDNSTNFI-VKDGRHP 620 SN + + +D +A++D+ ALA A++Q C P + + FI +++G HP Sbjct: 887 FSNHYEQWKQCID----CVAMLDVLAALAEYARQQLVICVPELVSAQTQPFIELEEGYHP 942 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 V + +I N L ++ L LLTGPNMGGKST +RQ L+ IMAQ+G Sbjct: 943 CVNPST-------YIPNGLQL---GTESEAPLSLLTGPNMGGKSTLMRQLGLLTIMAQIG 992 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 +++PA+ + +VD++F+R+G+ D++ +G STF+VE+ ET+ IL AT+ S V+LDE+GR Sbjct: 993 AHIPAAACRMSLVDRIFTRLGAQDDILAGHSTFLVELNETSLILKHATSNSLVLLDELGR 1052 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRF---HNATLQVSDSN- 796 GTAT DG +IA + + +L + +CR L +TH+H L D KR H A + ++ N Sbjct: 1053 GTATYDGTAIAASVVNFL-ASLKCRTLFSTHYHNLIDFFHMDKRVTLGHMACMVENEDNT 1111 Query: 797 ----EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 E + FL+K G SYG KLAG+ + +I RAY++ K E + + ++ Sbjct: 1112 DPTQETVTFLYKYTAGACPKSYGFNAAKLAGMSHGIIKRAYELSKKVEAIALQRKITAKV 1171 Query: 853 YYPEIQTKESKNNLSKNDKLFVEKIKCLNL 882 + +SK + N K ++++K ++ Sbjct: 1172 VAASVGEPKSKQDKLNNLKDLLQQLKMCHV 1201 >gi|151942085|gb|EDN60441.1| MutS-like protein [Saccharomyces cerevisiae YJM789] Length = 1242 Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 232/886 (26%), Positives = 405/886 (45%), Gaps = 117/886 (13%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP +QY EIKS D +VF++ G F+EL+ DALLA+ + + G+ ++ + G Sbjct: 312 TPFEKQYWEIKSKMWDCIVFFKKGKFFELYEKDALLANALFDLKIAGGGR---ANMQLAG 368 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR-GNKSLVRRNVVRLVTPGTLTEDQL 144 +P + ++ + I++G+++A +Q ES L + R G+K +V+R + ++T GTLT+ + Sbjct: 369 IPEMSFEYWAAQFIQMGYKVAKVDQRESMLAKEMREGSKGIVKRELQCILTSGTLTDGDM 428 Query: 145 LSPTDSNYLMA-------------------VARIRTE-WAIAWIDISTGIFKI----STS 180 L + + +A V ++ T+ + A+ID +TG ++ S Sbjct: 429 LHSDLATFCLAIREEPGNFYNETQLDSSTIVQKLNTKIFGAAFIDTATGELQMLEFEDDS 488 Query: 181 NHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAV---AQPNVFFDHSISESRI 237 +L + + ++ P E++ LS TL N V + PN F+ + Sbjct: 489 ECTKLDTLMSQVRPMEVVMERNNLS---------TLANKIVKFNSAPNAIFNEVKAGEEF 539 Query: 238 AD----YYNITTVDTFG----------SFSQVEKTAAAAAIS--------YIKKTQMVNK 275 D Y I + + F S+ K +A +++ Sbjct: 540 YDCDKTYAEIISSEYFSTEEDWPEVLKSYYDTGKKVGFSAFGGLLYYLKWLKLDKNLISM 599 Query: 276 PTIGYPEREDIQSTLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERI 334 I + Q ++ +D NLEI + GS + +L K + +IT G R+ + + Sbjct: 600 KNIKEYDFVKSQHSMVLDGITLQNLEIFSNSFDGSDKGTLFKLFNRAITPMGKRMMKKWL 659 Query: 335 ASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVI 394 PL I +RLDS++ +Q+ L ++ PD+ R L+R+ + KD + Sbjct: 660 MHPLLRKNDIESRLDSVDSLLQDITLREQLEITFSKLPDLERMLARIHSRTIKVKDFEKV 719 Query: 395 RDGIRSGINILNLFLKNDLPEEL--------RGAVEKLKKLPQSLEKTLSSMLSDDLPTF 446 + I + + NDL ++ G VE +K + E+ + + +P Sbjct: 720 ITAFETIIELQDSLKNNDLKGDVSKYISSFPEGLVEAVKSWTNAFERQKAINENIIVPQR 779 Query: 447 KRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVT 506 D F D S+D + L D+ I+ + Y ++ K N++ K + Y IE+ Sbjct: 780 GFDIEF-----DKSMDRIQELEDELMEIL----MTYRKQFKCSNIQYKDSGKEIYTIEIP 830 Query: 507 SSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILS 566 S+ K++ S ++ R+ + E+ L + A +E E L Sbjct: 831 ISAT----KNVPS--NWVQMAANKTYKRYYSDEVRALARSMAEAKEIHKTLE----EDLK 880 Query: 567 NAIIEQSESLDNA---SQVIAIIDISIALAILAKEQNY-----CRPII----DNSTN--- 611 N + ++ ++ N + AI +I LAI + Y CRP I D+ TN Sbjct: 881 NRLCQKFDAHYNTIWMPTIQAISNIDCLLAI-TRTSEYLGAPSCRPTIVDEVDSKTNTQL 939 Query: 612 --FI-VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 F+ K RHP L ++K FI ND +L K +L LLTG N GKST LR Sbjct: 940 NGFLKFKSLRHPCF--NLGATTAKDFIPNDIELG----KEQPRLGLLTGANAAGKSTILR 993 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 + VIMAQMG YVP A + +D++ +R+G+ DN+ G+STF VE+ ET IL+ AT Sbjct: 994 MACIAVIMAQMGCYVPCESAVLTPIDRIMTRLGANDNIMQGKSTFFVELAETKKILDMAT 1053 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH-- 786 N+S +++DE+GRG ++ DG +IA + + ++ + G ATH+ L K + Sbjct: 1054 NRSLLVVDELGRGGSSSDGFAIAESVLHHVATHIQSLGFFATHYGTLASSFKHHPQVRPL 1113 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 ++ V ++ + FL+K++ G ++ S+G+ V + G+ +I A Sbjct: 1114 KMSILVDEATRNVTFLYKMLEGQSEGSFGMHVASMCGISKEIIDNA 1159 >gi|133930603|gb|ABO43872.1| MutS [Lactobacillus reuteri] Length = 563 Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 179/586 (30%), Positives = 303/586 (51%), Gaps = 32/586 (5%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K +TPMM QY ++K PD+ +FYR+GDFYELF DDA+ ++ L +TLT R IP Sbjct: 3 KKTTPMMEQYQKVKDQYPDAFLFYRLGDFYELFNDDAVKGAQLLELTLTTRNHSAKNPIP 62 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP N+YI LI G+++AICEQ+E P +A K +V+R V RL+TPGT + Sbjct: 63 MCGVPHRAVNNYIDILIDKGYKVAICEQMEDPKKA-----KGMVKRAVTRLITPGTQMDL 117 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFK-ISTSNHDRLISDIMRIDPREIIFSE 201 D+NYL A++ ++IA+ D+STG K S +N + +++++ + +E++ + Sbjct: 118 NGEQARDNNYLAAISGQNGVFSIAYTDLSTGELKTTSLNNANDAVNELVNLQSKEVVV-D 176 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA 261 EL AE + F+ + QP V + IS Y +D Q ++ A Sbjct: 177 GELP-AEITTQFKQRNILQSHQPTVLKNAEIS-------YLTQDLD-----DQAQQHVVA 223 Query: 262 AAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDY 320 +SY+ TQ + + S + ID +++NLE++R + SG R+ +L +D Sbjct: 224 LLVSYLLTTQKRSLAHLQKAIAYQPSSFMKIDHYSKTNLELMRNMRSGKRQGTLAWLLDE 283 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 + T G RL I PL + I+ R D + + + + +Q+ L D+ R R Sbjct: 284 TKTAMGSRLLKRWIDRPLINQNAISERQDKVQELLDHYFERSNLQQELIKVYDLERLAGR 343 Query: 381 LKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP--EELRGAVEKLKKLPQSLEKTLSSM 438 + G +D+ ++ ++ I + D P EEL+ ++ L + ++++ Sbjct: 344 IAYGSVNGRDLIQLKTSLKQVPKIKYVLETLDSPVFEELQKQLDPLDDVADLIDQS---- 399 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 + ++ P +GG ++DG + LD+ R + K+ IA LQ + T I NLKI +N+ Sbjct: 400 IVEEPPIAVTEGGVIKDGYNDQLDQYRDAMNNGKQWIADLQEHERKLTGINNLKIGYNHV 459 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 GY+IEVT + + L KDR+ +QT+ N RF+T EL + E I A + +E Sbjct: 460 FGYYIEVTKVNLNKL-----PKDRYERKQTLVNAERFSTPELKEKEALIMGAQEKSTALE 514 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP 604 + F + + Q L +Q +A +D+ + A+++++ ++ RP Sbjct: 515 YDIFVKIREQVKGQITRLQKLAQQLAELDVLQSFAVVSEDYHFVRP 560 >gi|115395500|ref|XP_001213513.1| hypothetical protein ATEG_04335 [Aspergillus terreus NIH2624] gi|121739057|sp|Q0CPP9|MSH3_ASPTN RecName: Full=DNA mismatch repair protein msh3; AltName: Full=MutS protein homolog 3 gi|114193082|gb|EAU34782.1| hypothetical protein ATEG_04335 [Aspergillus terreus NIH2624] Length = 1117 Score = 257 bits (657), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 253/908 (27%), Positives = 426/908 (46%), Gaps = 146/908 (16%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK---------- 75 TPM RQ I++K + D ++ ++G + F +DA +A++ L I GK Sbjct: 207 TPMERQIIDMKRKHMDKILAVQVGYKFRFFGEDARVAAKELSIVCIP-GKFRFDEHPSEA 265 Query: 76 HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLV 134 HL + +PVH + ++++LI GH++ I QIE + L+A + R + + Sbjct: 266 HLDR-FASASIPVHKLHVHVKRLITAGHKVGIVRQIETAALKAAGDNRNAPFVRKLTNVY 324 Query: 135 TPGTLTEDQ---------LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRL 185 T GT +D + + Y++ + A W N +++ Sbjct: 325 TKGTYIDDMEGLEGPTAGAGTTAATGYMLCITETN---AKGW------------GNDEKV 369 Query: 186 ISDIMRIDPR--EIIFSEKELSHAEYKSLFET-LGNVAVAQPNVFFDHSISESRIADYYN 242 I+ + P +I+F + E +S ET L ++A + + D S + ++ + Sbjct: 370 HVGIVAVQPATGDIVFDDFE--DGFMRSEIETRLLHLAPCELLIVGDLSKASDKLVQHLA 427 Query: 243 ITTVDTFGSFSQVE-----KTAAAAAISYIKK--------------TQMVN--KPTIGYP 281 + ++ FG +VE KTAAA A S++ TQ N + + P Sbjct: 428 GSKMNVFGDKVRVERTTKSKTAAAEAHSHVSSFYADKVKSANASDDTQASNLLQKVLNLP 487 Query: 282 EREDI-----------------------------QSTLFIDSAARSNLEILRTLSG-SRE 311 E+ I +S + ++ +LEI + + S Sbjct: 488 EQVSICLSSMIKHMTEYGLEHVFDLTKYFQHFSSRSHMLLNGNTLMSLEIYQNQTDHSSR 547 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFF--IQNPILINPIQKIL- 368 SL T+D + T G RL + + PL D +K+ R+++I ++ ++ ++ +L Sbjct: 548 GSLFWTLDRTQTRFGQRLLRKWVGRPLLDKSKLEERVNAIEELKSMEKVAMVERLKGVLG 607 Query: 369 KSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLK--NDL--PEELRGAV--- 421 K+ D+ + L R+ GR R + +G+ L + + D+ PE+ Sbjct: 608 KAKCDLEKILIRIYYGR-------CTRPELLTGLQTLQMIAQEFGDVKSPEDSGFTTPIL 660 Query: 422 -EKLKKLPQSLEKTLSSMLSDDLPTFKRDGG--FLRDGADASLDETRSLRDQSKRIIASL 478 E + LP LE LS + +L + D F R+ +ET + + K IAS+ Sbjct: 661 NEAIASLPTILEDVLSFLNKINLHAARNDDKYEFFREA-----EETEDISEH-KLGIASV 714 Query: 479 QLKYAEETKIKNL-----KIKHNNNLG--YFIEVTSSSASVLKKDLESKDRFIHRQTMSN 531 + + E + KI++ G Y IEV ++S S LK+ S ++ Sbjct: 715 EHELREYQSVAGKILGRSKIQYVTVAGIDYLIEVENNS-SYLKRVPAS---WVKISGTKK 770 Query: 532 LTRFTTLELIDLENRITNATNSALLIELE-SFEILSNAIIEQSESLDNASQVIAIIDISI 590 L+RF + E+I L R + AL + ++ L I + + Q +A ID + Sbjct: 771 LSRFHSPEVIKLL-RQRDQHKEALAAACDHAYASLLAEIAANYQPFRDCVQSLATIDCLL 829 Query: 591 ALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSG 650 +L+ +A + Y +P ++T V+ GRHP+VE+ L ++ ND +L D Sbjct: 830 SLSSIANQPGYVKPEYADNTCIHVEQGRHPMVEQLLLDS----YVPNDINL----DSEET 881 Query: 651 KLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGR 710 + L+TGPNMGGKS+++RQ ALI IM Q+GSYVPA A +G++D +F+R+G+ DN+ +G Sbjct: 882 RALLVTGPNMGGKSSYVRQIALIAIMGQVGSYVPAQSAKLGMLDAVFTRMGAFDNMLAGE 941 Query: 711 STFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLAT 770 STFMVE+ ETA IL QAT +S VILDE+GRGT+T DG++IA A ++Y+ + R L T Sbjct: 942 STFMVELSETADILKQATPRSLVILDELGRGTSTHDGVAIAQAVLDYMVRSLRSLTLFIT 1001 Query: 771 HFHELTDLSKSL--KRFHNATLQVSDSNEG----IIFLHKVIPGIADHSYGIQVGKLAGL 824 H+ L+ + S N ++ ++S G I FL++V G+A SYG+ V +LA L Sbjct: 1002 HYQHLSSMVHSFPNHELRNVHMRFTESGSGQDEEITFLYEVGEGVAHRSYGLNVARLANL 1061 Query: 825 PNTVISRA 832 P +I A Sbjct: 1062 PVPLIEVA 1069 >gi|218670989|ref|ZP_03520660.1| DNA mismatch repair protein [Rhizobium etli GR56] Length = 189 Score = 257 bits (657), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 114/165 (69%), Positives = 143/165 (86%), Gaps = 4/165 (2%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 E+ S+TPMM QYIEIK+ NP SL+FYRMGDFYELFF+DAL ASR LGITLTKRG+H+G+ Sbjct: 21 ESRASATPMMEQYIEIKANNPGSLLFYRMGDFYELFFEDALEASRALGITLTKRGQHMGQ 80 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 DIPMCGVPVH A+ Y+QKLI +G R+A+CEQ+E P EAKKRG KS+V+R+VVRLVTPGT+ Sbjct: 81 DIPMCGVPVHAADDYLQKLISLGFRVAVCEQVEDPAEAKKRGGKSVVKRDVVRLVTPGTI 140 Query: 140 TEDQLLSPTDSNYLMAVARIR----TEWAIAWIDISTGIFKISTS 180 TE++LLSP++SNYLMA+ARIR A+AWIDISTG+F+++ + Sbjct: 141 TEEKLLSPSESNYLMALARIRGGAEPALALAWIDISTGVFRLAET 185 >gi|60280030|gb|AAX16371.1| mismatch repair ATPase [uncultured murine large bowel bacterium BAC 14] Length = 522 Score = 257 bits (657), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 168/535 (31%), Positives = 287/535 (53%), Gaps = 28/535 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD--IPM 83 TPMM+QY+E K D ++FYR+GDFYE+FF+DAL AS+ L ITLT GK+ G++ PM Sbjct: 5 TPMMQQYMETKKEYNDCILFYRLGDFYEMFFEDALTASKELEITLT--GKNCGQEERAPM 62 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 CG+P H + Y+ KL+ G+++AICEQ+E P +A K LV+R VVR+VTPGT Q Sbjct: 63 CGIPYHAVDGYLTKLVAKGYKVAICEQVEDPKQA-----KGLVKREVVRIVTPGTNLNVQ 117 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSEK 202 L + +NYLM+++ + + I+ D++TG + ++ + +L+ ++ + P EII ++ Sbjct: 118 SLEESKNNYLMSISYVPNKIGISIADVTTGDYYLTEVEDARKLMDEVNKYMPSEIICNDA 177 Query: 203 EL-SHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFG--SFSQVEKTA 259 L S + + L A +FD + ++++ + G F A Sbjct: 178 FLVSSVDIDDMRNRLKITVNAVEAHYFDEDACRKCLMKHFHVQALIGLGIEDFP-TGMIA 236 Query: 260 AAAAISYIKKTQMVNKP---TIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLL 315 A A + Y+ +TQ + T YP + + +DS+ R NLE+ TL +++ SLL Sbjct: 237 AGALLQYLYETQRTSSLAHFTHLYPYLTN--KYMLLDSSTRRNLELTETLREKQKRGSLL 294 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T G R I PL +I R D++ ++ + + I++ L D+ Sbjct: 295 WVLDKTKTAMGARTLRSYIEQPLISPKEIGKRQDAVEILCKDSVARDEIREYLNPIYDLE 354 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R L ++ P+D+ R+ ++ +I + + L EL + + + + + Sbjct: 355 RLLGKVSYKTANPRDLIAFRNSLKMLPHIKTVL--DGLDGELLADINRNIDGLEDIYSLI 412 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + ++ P R+GG +++G D ++D R + + K +A+L+ + E T IKNL+IK+ Sbjct: 413 DHAIVEEPPITIREGGMIQEGFDETIDSLRHAKTEGKNWLAALEEEDRERTGIKNLRIKY 472 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 N GY+ EVT+S +++ D +I +QT++N RFTT L +LE+ I NA Sbjct: 473 NKVFGYYFEVTNSYLNMVPDD------YIRKQTLTNAERFTTPRLKELEDTILNA 521 >gi|320035900|gb|EFW17840.1| DNA mismatch repair protein msh6 [Coccidioides posadasii str. Silveira] Length = 1204 Score = 257 bits (656), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 222/867 (25%), Positives = 398/867 (45%), Gaps = 86/867 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P +QY EIK D++VF++ G FYEL+ +DA + + + LT R ++ M G Sbjct: 317 SPFEKQYWEIKQKFWDTVVFFKKGKFYELYENDATIGHQLFDLKLTDR-----VNMRMVG 371 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL-------EAKKRGNKSLVRRNVVRLVTPGT 138 VP + ++ + + G +IA +Q ES L + KK+G+K +++R + ++T GT Sbjct: 372 VPESSLEYWANQFVAKGFKIARVDQSESALGKEMRERDDKKKGDK-VIKRELSCVLTAGT 430 Query: 139 LTEDQLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFKISTSNHD----RLISDIM 190 L + +L S Y +AV + + ++++D +TG F ++ D + + + Sbjct: 431 LVDGAMLQDDMSTYCVAVKEALVDDLPAFGVSFVDTATGQFFLTEFTDDVDMTKFETLVA 490 Query: 191 RIDPREIIFSEKELSHAEYKSLFETLGNVAVA---QPN-VFFDHSISESRI--ADYYNIT 244 + P+E++ + +S + L + +P F+D S + + +Y+ Sbjct: 491 QTRPQELLLEKGFMSPKALRILKNNTNPTTIWNYLKPEREFWDASTTRRELDAGEYFVSV 550 Query: 245 TVDTFGSFSQVEKTAA---------AAAISYIKKTQM------VNKPTIGYPEREDIQST 289 D ++ +V + A A I Y++ ++ + T P R+ S+ Sbjct: 551 DQDNIEAWPEVLRQARHKELVISSFGALIQYLRMLKIERDLITIGNFTWYDPIRK--ASS 608 Query: 290 LFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRL 348 L +D NLE+ + G ++ +L + ++ IT G R+F + + PL DS KIN RL Sbjct: 609 LVLDGQTLINLEVFANSYDGGQDGTLFQLLNRCITPFGKRMFKQWVCHPLMDSKKINARL 668 Query: 349 DSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF 408 D+++ + + + L PD+ R +SR+ G + +D + +G ++L Sbjct: 669 DAVDALNADSSIRDQFSSQLTKMPDLERLISRVHAGTCKCQDFVRVLEGFEQIDYTMSLL 728 Query: 409 LKNDLPEELRG----AVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDET 464 + + + G ++ + L Q + + + D F G D DAS Sbjct: 729 KQTGSGDGVIGHLISSMPDMDGLLQYWKTAFDRVKAKDSGIFVPKAGVEED-FDASTQRI 787 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 + + +++ ++ E + + N Y +EV ++ K + Sbjct: 788 EEIEAKLDQLLKRVR----RELNSSAIIYRDNGKEIYQLEVPVKVRNIPKS-------WD 836 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 R+ EL L ++ A + I E E ++ A ++ A Sbjct: 837 QMSATKQAKRYYFPELRGLIRKLQEAQETHNQIVKEVTSRFYARFDENYQTWLAAVKITA 896 Query: 585 IIDISIALAILAKEQNY--CRPIIDNSTNFIV--KDGRHPIVEKTLKQQSSKPFIANDCD 640 +D I LA + Y CRP+ +S ++ ++ RHP + T+ FI ND Sbjct: 897 QLDCLIGLAKASTAIGYPSCRPVFVDSDRSVLEFQELRHPCMLATVGD-----FIPNDVK 951 Query: 641 LSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRV 700 L N+ + LLTG N GKST LR VIMAQ+G YVP + A + VD++ SR+ Sbjct: 952 LG----GNTASINLLTGANAAGKSTVLRMTCTAVIMAQIGCYVPCASARLTPVDRIMSRL 1007 Query: 701 GSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHE 760 G+ DN+ +STF VE+ ET IL++AT++S VILDE+GRGT++ DG+++A A + ++ Sbjct: 1008 GANDNIFGAQSTFFVELSETKKILSEATSRSLVILDELGRGTSSYDGVAVAQAVLHHVAT 1067 Query: 761 TNRCRGLLATHFHELT-------DLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHS 813 G ATH+H L ++S R H V + + + FL+K+ G+A+ S Sbjct: 1068 HIGALGFFATHYHSLAAEFEGHPEISPRRMRIH-----VDEEDRRVTFLYKLEDGVAEGS 1122 Query: 814 YGIQVGKLAGLPNTVISRAYDILKTFE 840 +G+ + G+P VI A K +E Sbjct: 1123 FGMHCASMCGIPTQVIETAEVAAKEWE 1149 >gi|327296443|ref|XP_003232916.1| DNA mismatch repair protein msh6 [Trichophyton rubrum CBS 118892] gi|326465227|gb|EGD90680.1| DNA mismatch repair protein msh6 [Trichophyton rubrum CBS 118892] Length = 1217 Score = 257 bits (656), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 228/872 (26%), Positives = 403/872 (46%), Gaps = 89/872 (10%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P +QY EIK D++VF++ G FYEL+ +DA + + + LT R ++ M G Sbjct: 318 SPFEKQYWEIKQKFWDTVVFFKKGKFYELYENDATIGHQLFDLKLTDR-----VNMRMVG 372 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL-----EAKKRGNK--------SLVRRNVVR 132 VP + +H+ + + G +IA +Q ES L E + +GNK +++R + Sbjct: 373 VPEMSLDHWANQFVAKGFKIARVDQSESALSKEMREREDKGNKMGKAQKEDKVIKRELAC 432 Query: 133 LVTPGTLTEDQLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFKISTSNHD----R 184 ++T GTL E ++ S Y +A+ + + I+++D +TG F +S D R Sbjct: 433 VLTTGTLVEGSMIQGDMSTYCVAIKEAIIDGLPAFGISFVDTATGQFFLSQFVDDVDMTR 492 Query: 185 LISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA---QPNVFF---DHSISESRIA 238 + + + P+E++ + +S + L G + +P F D ++ E Sbjct: 493 FETFVAQTRPQELLLEKSVMSTKALRILKNNTGPTTLWNYLKPGKEFWEADVTVRELDAG 552 Query: 239 DYYNITTVDTFGSFSQVEK---------TAAAAAISYIKKTQMVNK-PTIG-YPEREDIQ 287 Y+ + ++ Q + +A A + Y++ ++ TIG + + I+ Sbjct: 553 GYFVSEDKNHASAWPQALQDSRDKELVMSAFGALLQYLEMLKIGRDLITIGNFTWYDPIK 612 Query: 288 --STLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKI 344 S+L +D NLE+ T GS E +L + ++ +T G RLF + + PL D KI Sbjct: 613 KASSLVLDGQTLINLEVFANTYDGSSEGTLFQLLNRCVTPFGKRLFKQWVCHPLMDIKKI 672 Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 N RLD++ + + L PD+ R +SR+ G + +D + +G Sbjct: 673 NARLDAVESLNADSTVREQFSSQLTKMPDLERLISRVHAGTCKAQDFVRVLEGFEQIEYT 732 Query: 405 LNLFLK----NDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADAS 460 + L + + L +L A+ L L + E + + + + + DAS Sbjct: 733 MGLLKEAGSGHGLIGQLISAMPDLNGLLKFWETAFDRAKARECDILVPEES-VEEEFDAS 791 Query: 461 LDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESK 520 L D+ ++++ + +E K + K N Y +EV ++ K Sbjct: 792 KKNIEQLEDELEQVLQ----RTRKELKCSTIVFKDNGKEIYQLEVPIKIKNIPKS----- 842 Query: 521 DRFIHRQTMSNLTRFTTLELIDLENRITNATNS-ALLIELESFEILSNAIIEQSESLDNA 579 + + R+ EL L ++ A + A +++ + + + S L + Sbjct: 843 --WDQMSATKQVKRYYFPELRALIRKLQEARETHAQVVKGVAGRFYARFDKDYSSWLASI 900 Query: 580 SQVIAIIDISIALAILAKEQNY--CRPII--DNSTNFIVKDGRHPIVEKTLKQQSSKPFI 635 ++IA +D I LA + + CRPI D + ++ RHP + + FI Sbjct: 901 -KIIAQLDCLIGLAKASTALGHPSCRPIFVDDERSVLDFQELRHPCMMPNVGD-----FI 954 Query: 636 ANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDK 695 ND L ++ + LLTG N GKST LR VIMAQ+G YVP YA + VD+ Sbjct: 955 PNDVKLG----GDTSNINLLTGANAAGKSTVLRMTCTAVIMAQIGCYVPCEYARLTPVDR 1010 Query: 696 LFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATI 755 + SR+G+ DN+ + +STF VE+ ET IL++AT++S VILDE+GRGT++ DG+++A A + Sbjct: 1011 IMSRLGANDNIFAAQSTFFVELSETKKILSEATSRSLVILDELGRGTSSYDGVAVAQAVL 1070 Query: 756 EYLHETNRCRGLLATHFHELT-------DLSKSLKRFHNATLQVSDSNEGIIFLHKVIPG 808 ++ G ATH+H L +++ R H V D+ + FL+K+ G Sbjct: 1071 HHVATHIGALGFFATHYHSLAAEFEGHPEIAARRMRIH-----VDDAERRVTFLYKLEDG 1125 Query: 809 IADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 +A+ S+G+ + G+P+ V+ A K +E Sbjct: 1126 VAEGSFGMHCASMCGIPSKVVEGAEVAAKQWE 1157 >gi|330919210|ref|XP_003298519.1| hypothetical protein PTT_09267 [Pyrenophora teres f. teres 0-1] gi|311328245|gb|EFQ93396.1| hypothetical protein PTT_09267 [Pyrenophora teres f. teres 0-1] Length = 945 Score = 257 bits (656), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 126/277 (45%), Positives = 184/277 (66%), Gaps = 7/277 (2%) Query: 565 LSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEK 624 L A++ L + V+ +D++ A AILA E+N+ RPI+ + + GRHP+VE Sbjct: 662 LREAVVRNLVKLRRNAAVLDELDVAGAFAILAVEKNFVRPILSAEPSNNIVGGRHPVVEA 721 Query: 625 TLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684 L +Q K F NDC L DK ++WL+TGPNM GKST+LRQNALI I+AQ GS+VP Sbjct: 722 GLDEQGRK-FAPNDCLL---GDKE--RIWLITGPNMAGKSTYLRQNALISILAQTGSFVP 775 Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744 A YA IG+VDK+FSRVGSADNL +STFMVEM+ETA IL +AT +SFVI+DE+GRGT Sbjct: 776 AEYAEIGLVDKIFSRVGSADNLYQDQSTFMVEMLETAQILKEATPRSFVIMDEVGRGTTP 835 Query: 745 LDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG-IIFLH 803 DG+++ +A + +++ N+CR L ATHFH LTD++K ++ V + +G ++H Sbjct: 836 EDGIAVGYACLHHIYHINQCRTLFATHFHALTDMTKDFEKLGCYCNDVQEEPDGKFSYVH 895 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 ++ G+ S+ ++V ++AGLP ++ A +L+ + Sbjct: 896 RLRKGVNRESHALKVARVAGLPEDAVAVAARVLEQLK 932 Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 102/384 (26%), Positives = 180/384 (46%), Gaps = 47/384 (12%) Query: 47 RMGDFYELFFDDALLASRCLGITLTKRGKHLGKD---IPMCGVPVHTANHYIQKLIK-IG 102 R+G FYEL+F+ A + L + + + G +PM G P + + Y++ L++ + Sbjct: 46 RVGGFYELYFEHADEFAPLLNLKKSNKKAIKGSKKPAVPMAGFPAYQLDRYLKILVQDLN 105 Query: 103 HRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVA----- 157 +AI ++ + + + +G R+ V R+VTPGTL ++ + P ++NYL++V Sbjct: 106 KHVAISDEFLNDVSTRAKGEPQYTRK-VSRIVTPGTLIDEHFMDPWENNYLLSVHVDPTA 164 Query: 158 ---------------------RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPRE 196 RTE +AWID+S+G F +++ L S I RI PRE Sbjct: 165 LSEEKAVKESPGSSSVSSVLNLPRTEVGLAWIDLSSGDFLTQSTDIASLPSAIARIKPRE 224 Query: 197 IIFSE--KELSHAEYKSLFETLGNVAV-----AQPNVFFDH-SISESRIADYYNITTVDT 248 I+ +E ++ S+ + G+ QP D + E + D+ Sbjct: 225 ILLDSIFQEHDYSRIVSIMQEDGHTVTFQKPSEQPLTIKDWIPMLEDVVQDF-------D 277 Query: 249 FGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-S 307 +F+ E A + + Y+K + ++ + P R + ID + LEI T+ Sbjct: 278 MANFTSSEVAAGGSLLHYVKHQLLGSRTRLRAPVRHQADEHMSIDKNSLRALEIRSTIRE 337 Query: 308 GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI 367 G+ E SLL +++ ++T +G RL +R+A+P + IN RLD + IQ P L I + Sbjct: 338 GTFEGSLLHSLNRTVTKSGTRLLTQRLAAPSMSLSTINDRLDLVEEMIQYPQLRQDIIAL 397 Query: 368 LKSSPDVPRSLSRLKIGRGEPKDI 391 L + D R +++ GRG+ D+ Sbjct: 398 LGQTYDSLRLVTKFTYGRGDADDL 421 >gi|302657967|ref|XP_003020694.1| hypothetical protein TRV_05220 [Trichophyton verrucosum HKI 0517] gi|291184551|gb|EFE40076.1| hypothetical protein TRV_05220 [Trichophyton verrucosum HKI 0517] Length = 1217 Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 230/872 (26%), Positives = 401/872 (45%), Gaps = 89/872 (10%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P +QY EIK D++VF++ G FYEL+ +DA + + + LT R ++ M G Sbjct: 318 SPFEKQYWEIKQKFWDTIVFFKKGKFYELYENDATIGHQLFDLKLTDR-----VNMRMVG 372 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL-----EAKKRGNK--------SLVRRNVVR 132 VP + +H+ + + G +IA +Q ES L E + +GNK +++R + Sbjct: 373 VPEMSLDHWANQFVAKGFKIARVDQSESALSKEMREREDKGNKMGKAQKEDKVIKRELAC 432 Query: 133 LVTPGTLTEDQLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFKISTSNHD----R 184 ++T GTL E ++ S Y +A+ + + I+++D +TG F +S D R Sbjct: 433 VLTTGTLVEGSMIQGDMSTYCVAIKEAIIDGLPAFGISFVDTATGQFFLSQFVDDVDMTR 492 Query: 185 LISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA---QPNVFF---DHSISESRIA 238 + + + P+E++ + +S + L G + +P F D ++ E Sbjct: 493 FETFVAQTRPQELLLEKSAMSTKALRILKNNTGPTTLWNYLKPGKEFWEADVTVRELDAG 552 Query: 239 DYYNITTVDTFGSFSQVEK---------TAAAAAISYIKKTQMVNK-PTIG-YPEREDIQ 287 Y+ + ++ Q + +A A + Y++ + TIG + + I+ Sbjct: 553 SYFVSEDKNHASAWPQALQDARDKDLVMSAFGALLQYLEMLKTGRDLITIGNFTWYDPIK 612 Query: 288 --STLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKI 344 S+L +D NLEI T GS E +L + ++ +T G RLF + + PL D KI Sbjct: 613 KASSLVLDGQTLINLEIFANTYDGSSEGTLFQLLNRCVTPFGKRLFKQWVCHPLMDIKKI 672 Query: 345 NTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 N RLD++ + + L PD+ R +SR+ G + +D + +G Sbjct: 673 NARLDAVESLNADSTVREQFSSQLTKMPDLERLISRVHAGTCKAQDFVRVLEGFEQIEYT 732 Query: 405 LNLFLK----NDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADAS 460 + L + + L +L A+ L L + E + + + G + + DAS Sbjct: 733 MGLLKEAGSGHGLIGQLISAMPDLNGLLKFWETAFDRSKARESDILVPEEG-IEEEFDAS 791 Query: 461 LDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESK 520 L D+ ++++ + E K + K N Y +EV ++ K Sbjct: 792 KKNIEQLEDELEQVLQ----RTRRELKCSTIVFKDNGKEIYQLEVPIKIKNIPKS----- 842 Query: 521 DRFIHRQTMSNLTRFTTLELIDLENRITNATNS-ALLIELESFEILSNAIIEQSESLDNA 579 + + R+ EL L ++ A + A +++ + + + S L A Sbjct: 843 --WDQMSATKQVKRYYFPELRALIRKLQEARETHAQVVKGVAGRFYARFDKDYSSWL-AA 899 Query: 580 SQVIAIIDISIALAILAKEQNY--CRP--IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFI 635 ++IA +D I LA + + CRP + D + ++ RHP + + FI Sbjct: 900 VKIIAQLDCLIGLAKASTALGHPSCRPTFVDDERSVLDFQELRHPCMMPNVGD-----FI 954 Query: 636 ANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDK 695 ND L ++ + LLTG N GKST LR VIMAQ+G YVP YA + VD+ Sbjct: 955 PNDVKLG----GDTSNINLLTGANAAGKSTVLRMTCTAVIMAQIGCYVPCEYARLTPVDR 1010 Query: 696 LFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATI 755 + SR+G+ DN+ + +STF VE+ ET IL++AT +S VILDE+GRGT++ DG+++A A + Sbjct: 1011 IMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVL 1070 Query: 756 EYLHETNRCRGLLATHFHELT-------DLSKSLKRFHNATLQVSDSNEGIIFLHKVIPG 808 ++ G ATH+H L +++ R H V D+ + FL+K+ G Sbjct: 1071 HHVATHIGALGFFATHYHSLAAEFEGHPEIAARRMRIH-----VDDAERRVTFLYKLEDG 1125 Query: 809 IADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 +A+ S+G+ + G+P+ V+ A K +E Sbjct: 1126 VAEGSFGMHCASMCGIPSKVVEGAEVAAKQWE 1157 >gi|226291537|gb|EEH46965.1| DNA mismatch repair protein msh6 [Paracoccidioides brasiliensis Pb18] Length = 1207 Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 232/877 (26%), Positives = 400/877 (45%), Gaps = 101/877 (11%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P +QY EIK D++VF++ G FYEL+ +DA + + + LT R ++ M G Sbjct: 311 SPFEKQYWEIKQKFWDTVVFFKKGKFYELYENDATIGHQLFDLKLTDR-----VNMRMVG 365 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL--EAKKRGNKS---------LVRRNVVRLV 134 VP + +H+ + + G +IA +Q ES L E +++ K+ ++RR + ++ Sbjct: 366 VPEMSLDHWANQFVAKGFKIARVDQSESALGKEMREKQGKTGGSVGKQEKIIRRELACVL 425 Query: 135 TPGTLTEDQLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFKISTSNHD----RLI 186 T GTL + +L S Y +A+ + IA++D +TG F ++ D + Sbjct: 426 TSGTLVDGGMLQDDMSTYCVAIKEALVNDLPVFGIAFVDTATGQFYLAEFIDDVDMTKFE 485 Query: 187 SDIMRIDPREIIFSEKELSHAEYK-----SLFETLGNVAVAQPNVFF---DHSISESRIA 238 + + + P+E++ + +S + ++ TL N +P F D ++ E + Sbjct: 486 TFVAQTRPQELLLEKSAMSTKALRILKNNTIPTTLWNYL--KPGKEFWEADITVRELDAS 543 Query: 239 DYYNITTVDTFGSFSQVEK---------TAAAAAISYIKKTQM------VNKPTIGYPER 283 +Y+ D ++ QV + +A A + Y++ ++ + T P R Sbjct: 544 NYFVSPDGDNLLAWPQVLREARDKEFAMSAFGALVQYLRMLKIERDLITIGNFTWYDPIR 603 Query: 284 EDIQSTLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDST 342 + ++L +D NLE+ + G +E +L + ++ +T G R+F + + PL D+ Sbjct: 604 K--ATSLVLDGQTLINLEVFANSFDGGQEGTLFQLLNRCVTPFGKRMFKQWVCHPLVDTK 661 Query: 343 KINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGI 402 KIN RLD+++ + + N L PD+ R +SR+ G + +D + +G Sbjct: 662 KINARLDAVDALNADNAIRNQFSSQLTKMPDLERLISRVHAGSCKAQDFLRVLEGFEQID 721 Query: 403 NILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKR----DGGFL--RDG 456 + L + E + G + + +P LS L F R D G L G Sbjct: 722 YTMGLLKETGSGEGVIGQL--VSSMPD-----LSGHLKYWKTAFDRSKAKDSGILVPEAG 774 Query: 457 ADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKD 516 + D + + + + L + ++ + + N Y +EV SV K Sbjct: 775 VEEDFDVSHDKITEIEYELDQLLKRVRKQLGSTAIVYRDNGKEIYQLEVPIKIKSVPK-- 832 Query: 517 LESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESL 576 S D+ RF EL L ++ A + I E E + Sbjct: 833 --SWDQM---SATKQAKRFYFPELRSLIRQLQEAQETHSQIVKEVAGRFYARFDENYSTW 887 Query: 577 DNASQVIAIIDISIALAILAKEQNY--CRPIIDNSTNFIV--KDGRHPIVEKTLKQQSSK 632 A +V+A +D I+LA Y CRP+ + I+ ++ RHP + + Sbjct: 888 LAAVKVVAQLDCLISLAKATSALGYPSCRPVFVDEERSILEFQELRHPCMLPNVGD---- 943 Query: 633 PFIANDCDLS--CPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHI 690 FI ND L PN + LLTG N GKST LR VIMAQ+G +VP A + Sbjct: 944 -FIPNDVKLGGEAPN------INLLTGANAAGKSTILRMTCTAVIMAQIGCHVPCQSARL 996 Query: 691 GIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSI 750 VD++ SR+G+ DN+ + +STF VE+ ET IL++AT +S VILDE+GRGT++ DG+++ Sbjct: 997 TPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAV 1056 Query: 751 AWATIEYLHETNRCRGLLATHFHELT-------DLSKSLKRFHNATLQVSDSNEGIIFLH 803 A A + ++ G ATH+H L +++ R H V + + FL+ Sbjct: 1057 AQAVLHHVATHIGALGFFATHYHSLAAEFEGHPEIAPRRMRIH-----VDEEERRVTFLY 1111 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 K+ G+A+ S+G+ + G+PN V+ RA K +E Sbjct: 1112 KLEEGVAEGSFGMHCASMCGIPNKVVERAEIAAKQWE 1148 >gi|212536476|ref|XP_002148394.1| DNA mismatch repair protein Msh3 [Penicillium marneffei ATCC 18224] gi|210070793|gb|EEA24883.1| DNA mismatch repair protein Msh3 [Penicillium marneffei ATCC 18224] Length = 1116 Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 251/897 (27%), Positives = 430/897 (47%), Gaps = 123/897 (13%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK---------- 75 TPM +Q I+IK + D+L+ +G + F +DA A++ L I GK Sbjct: 205 TPMEKQVIDIKRKHMDTLLVVEVGYKFRFFGEDARTAAKELSIVCIP-GKMRFDEHPSEA 263 Query: 76 HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLV 134 HL + +PVH + ++++L+ GH++ + Q+E + L+A + R + + Sbjct: 264 HLDR-FASASIPVHRLHVHVKRLVTAGHKVGVVRQLETAALKAAGDNRNAPFVRKLTNVY 322 Query: 135 TPGTLTED----------QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSN--H 182 T GT +D + + YL+ + T + + + + +T + + Sbjct: 323 TKGTYIDDAEGLSTPAAASAGATPATGYLLCITESNTSGSDERVHVGIVAVQPATGDIIY 382 Query: 183 DRLISDIMR---------IDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFD---- 229 D MR I P EI+ EL+ A K + +++ ++ NVF D Sbjct: 383 DEFEDGFMRGEIETRLLHIAPCEILIV-GELTKATDK----LVKHLSGSKMNVFGDKVRV 437 Query: 230 HSISESRIADYYNITTVDTFGSFSQVEKTAAAA----AISYIKKT-QMVNKPTI------ 278 ++ S+ A + V +F ++Q K+ A A + ++K Q+ ++ T+ Sbjct: 438 ERVARSKTAAAEGHSRVSSF--YAQKLKSTDAGDDGKASALLEKVLQLPDQVTVCLASMI 495 Query: 279 ---------------GYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDYSI 322 Y + +S + ++ ++LEI + + S + SL T+D + Sbjct: 496 DHLSEYGLEHVFDLTKYFQSFSARSHMLLNGNTLTSLEIYQNQTDYSSKGSLFWTMDRTR 555 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFI---QNPILINPIQKIL-KSSPDVPRSL 378 T G RL + + PL D ++ R+D++ + QN L ++ +L K D+ RSL Sbjct: 556 TRFGQRLLRKWVGRPLLDKRQLEERVDAVEELLNSEQNQ-LTEKLKDLLSKVRSDLERSL 614 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLK----NDLPEELRGAVEKLKKLPQSLEKT 434 R+ G+ ++ + ++ I N F+ D E E + LP E Sbjct: 615 IRIYYGKCTRPELLTVLQTLQM---IANTFVHIKSAGDTGFESTMISEAIAALPMIQEDV 671 Query: 435 LSSMLSDDLPTFKRDGG--FLRDGADASLDETRSLRDQSKRIIASLQ------LKYAEET 486 + + ++ K D F R+ +E+ + +Q K IAS++ L A E Sbjct: 672 VMFLEKINMHAAKNDDKYEFFRES-----EESDDITEQ-KLGIASVEHDLEQHLSVAAEV 725 Query: 487 KIKNLKIKHNNNLG--YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLE 544 K K+ + + G Y IEV ++SA K+ S + L+RF T +++ L Sbjct: 726 LGKK-KVDYVTSAGIEYLIEVDNNSAQ-FKRVPASWAKI---SGTKKLSRFHTPDVVQL- 779 Query: 545 NRITNATNSALLIELESFEI-LSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCR 603 R + AL + I L I + +S + Q +A++D +LA +A + Y + Sbjct: 780 IRQRDQHKEALAAACDKAYIRLLGEISTRYQSFRDCIQSLALLDCLFSLAAIATQPGYTK 839 Query: 604 PIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 P N T +V+ GRHP+VE+ L ++ ND +L+ + + L+TGPNMGGK Sbjct: 840 PQYTNETRIVVEQGRHPMVEQLLLD----SYVPNDTNLAT----DETRALLVTGPNMGGK 891 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 S+++RQ ALI IM Q+GSYVPA A +G++D +F+R+G+ DN+ +G STFMVE+ ETA I Sbjct: 892 SSYVRQVALIAIMGQIGSYVPAKSATLGMLDAVFTRMGAFDNMLTGESTFMVELSETADI 951 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL- 782 L QAT +S VILDE+GRGT+T DG++IA A ++Y+ + R L TH+ L+ ++KS Sbjct: 952 LKQATPRSLVILDELGRGTSTHDGVAIAHAVLDYMVRSIRSLTLFITHYQNLSVMTKSFS 1011 Query: 783 -KRFHNATLQVSDSN------EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 N ++ ++S E I FL++V G+A SYG+ V +LA LP++V+ A Sbjct: 1012 NNELRNVHMRFTESGGDKEGEEEITFLYEVGEGVAHRSYGLNVARLANLPHSVLDLA 1068 >gi|225679781|gb|EEH18065.1| DNA mismatch repair protein mutS [Paracoccidioides brasiliensis Pb03] Length = 1256 Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 231/877 (26%), Positives = 399/877 (45%), Gaps = 101/877 (11%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P +QY EIK D++VF++ G FYEL+ +DA + + + LT R ++ M G Sbjct: 360 SPFEKQYWEIKQKFWDTVVFFKKGKFYELYENDATIGHQLFDLKLTDR-----VNMRMVG 414 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL--EAKKRGNKS---------LVRRNVVRLV 134 VP + +H+ + + G +IA +Q ES L E +++ K+ ++RR + ++ Sbjct: 415 VPEMSLDHWANQFVAKGFKIARVDQSESALGKEMREKQGKTGGSVGKQEKIIRRELACVL 474 Query: 135 TPGTLTEDQLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFKISTSNHD----RLI 186 T GTL + +L S Y +A+ + IA++D +TG F ++ D + Sbjct: 475 TSGTLVDGGMLQDDMSTYCVAIKEALVNDLPVFGIAFVDTATGQFYLAEFIDDVDMTKFE 534 Query: 187 SDIMRIDPREI-----IFSEKELSHAEYKSLFETLGNVAVAQPNVFF---DHSISESRIA 238 + + + P+E+ + S K L + ++ TL N +P F D ++ E + Sbjct: 535 TFVAQTRPQELLLEKSVMSTKALRILKNNTIPTTLWNYL--KPGKEFWEADITVRELDAS 592 Query: 239 DYYNITTVDTFGSFSQVEK---------TAAAAAISYIKKTQM------VNKPTIGYPER 283 +Y+ D ++ QV + +A A + Y++ ++ + T P R Sbjct: 593 NYFVSPDGDNLLAWPQVLREARDKEFAMSAFGALVQYLRMLKIERDLITIGNFTWYDPIR 652 Query: 284 EDIQSTLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDST 342 + ++L +D NLE+ + G +E +L + ++ +T G R+F + + PL D+ Sbjct: 653 K--ATSLVLDGQTLINLEVFANSFDGGQEGTLFQLLNRCVTPFGKRMFKQWVCHPLVDTK 710 Query: 343 KINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGI 402 KIN RLD+++ + + N L PD+ R +SR+ G + +D + +G Sbjct: 711 KINARLDAVDALNADNAIRNQFSSQLTKMPDLERLISRVHAGSCKAQDFLRVLEGFEQID 770 Query: 403 NILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKR----DGGFL--RDG 456 + L + E + G + + +P LS L F R D G L G Sbjct: 771 YTMGLLKETGSGEGVIGQL--VSSMPD-----LSGHLKYWKTAFDRSKAKDSGILVPEAG 823 Query: 457 ADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKD 516 + D + + + + L + ++ + + N Y +EV +V K Sbjct: 824 VEEDFDVSHDKITEIEYELDQLLKRVRKQLGSTAIVYRDNGKEIYQLEVPIKIKTVPKS- 882 Query: 517 LESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESL 576 + RF EL L ++ A + I E E + Sbjct: 883 ------WDQMSATKQAKRFYFPELRSLIRQLQEAQETHSQIVKEVAGRFYARFDENYSTW 936 Query: 577 DNASQVIAIIDISIALAILAKEQNY--CRPIIDNSTNFIV--KDGRHPIVEKTLKQQSSK 632 A +V+A +D I+LA + Y CRP+ + I+ ++ RHP + + Sbjct: 937 LAAVKVVAQLDCLISLAKASSALGYPSCRPVFVDEERSILEFQELRHPCMLPNVGD---- 992 Query: 633 PFIANDCDLS--CPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHI 690 FI ND L PN + LLTG N GKST LR VIMAQ+G +VP A + Sbjct: 993 -FIPNDVKLGGKAPN------INLLTGANAAGKSTILRMTCTAVIMAQIGCHVPCQSARL 1045 Query: 691 GIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSI 750 VD++ SR+G+ DN+ + +STF VE+ ET IL++AT +S VILDE+GRGT++ DG+++ Sbjct: 1046 TPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAV 1105 Query: 751 AWATIEYLHETNRCRGLLATHFHELT-------DLSKSLKRFHNATLQVSDSNEGIIFLH 803 A A + ++ G ATH+H L +++ R H V + + FL+ Sbjct: 1106 AQAVLHHVATHIGALGFFATHYHSLAAEFEGHPEIAPRRMRIH-----VDEEERRVTFLY 1160 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 K+ G+A+ S+G+ + G+PN V+ RA K +E Sbjct: 1161 KLEEGVAEGSFGMHCASMCGIPNKVVERAEIAAKQWE 1197 >gi|90086235|dbj|BAE91670.1| unnamed protein product [Macaca fascicularis] Length = 583 Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 181/596 (30%), Positives = 315/596 (52%), Gaps = 62/596 (10%) Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQN-PILINPIQKILKSS 371 SLL +D++ T G R + + PL +IN RLD+++ + + + I+ L+ Sbjct: 6 SLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKL 65 Query: 372 PDVPRSLSRLKIGRGEPKDIAVI-------RDGIRSGINILNLFLKNDLPEELRGAVEKL 424 PD+ R L + + ++ +I + ++ I +N +++DL LR + ++ Sbjct: 66 PDIERGLCSIYHKKCSTQEFFLIVKTLYHLKSEFQAIIPAVNSHVQSDL---LRTVILEI 122 Query: 425 KKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAE 484 +L +E L +L++ +D +D L + R +D+ + + +++ E Sbjct: 123 PELLSPVEHYLK-ILNEQAAKVGDKTELFKDLSDFPLIKKR--KDEIQGVSDKIRMHLQE 179 Query: 485 ETKI-KNLKIKHNNNLG--YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELI 541 KI KN ++ G + IE+ +S+ S + D ++ + ++RF + ++ Sbjct: 180 IRKILKNPSAQYVTVSGQEFMIEIKNSAVSCIPTD------WVKVGSTKAVSRFHSPFVV 233 Query: 542 DLENRITNATNSALLIEL--ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQ 599 + R N L+++ E + L E L A +A +D +LA +AK+ Sbjct: 234 E-NYRHLNQLREQLVLDCSAEWLDFLEK-FSEHYHYLCKAVHHLATVDCIFSLAKVAKQG 291 Query: 600 NYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPN 659 NYCRP + I+K+GRHP+++ L +Q ++ N DLS ++S ++ ++TGPN Sbjct: 292 NYCRPTVQEERKIIIKNGRHPVIDVLLGEQDQ--YVPNSTDLS----EDSERVMIITGPN 345 Query: 660 MGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIE 719 MGGKS++++Q ALI IMAQ+GSYVPA A IGIVD +F+R+G+ADN+ GRSTFM E+ + Sbjct: 346 MGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTD 405 Query: 720 TASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLS 779 TA I+ +AT+QS VILDE+GRGT+T DG++IA+AT+EY + L TH+ + +L Sbjct: 406 TAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELE 465 Query: 780 KS----LKRFHNATLQVSDSN----------EGIIFLHKVIPGIADHSYGIQVGKLAGLP 825 K+ + +H L D + + + FL+++ GIA SYG+ V KLA +P Sbjct: 466 KNYSHQVGNYHMGFLVSEDESKLDPGEEQVPDFVTFLYQITRGIAARSYGLNVAKLADIP 525 Query: 826 NTVISRAYDI--------------LKTFEKLY-HHNQKDMRLYYPEIQTKESKNNL 866 ++ +A LK F KL+ HN +D++ + E + +E++ +L Sbjct: 526 GEILKKAAHKSKELEGLINTKRKRLKYFAKLWTMHNAQDLQKWTEEFEMEETQTSL 581 >gi|224532909|ref|ZP_03673520.1| DNA mismatch repair protein MutS [Borrelia burgdorferi WI91-23] gi|224512147|gb|EEF82537.1| DNA mismatch repair protein MutS [Borrelia burgdorferi WI91-23] Length = 579 Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 180/612 (29%), Positives = 314/612 (51%), Gaps = 48/612 (7%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K+ TPM+RQY++IK D+++F+R+G FYE+FFDDA+ S+ L +TLTKR +++P Sbjct: 3 KNVTPMIRQYLDIKKKYKDAVLFFRVGSFYEMFFDDAIEVSKLLNLTLTKR-----ENVP 57 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVP HT+ YI+KLI ++AICEQ A + + R VV ++TPG + ++ Sbjct: 58 MCGVPYHTSKEYIRKLILFDKKVAICEQ------ASNSTSGGPLEREVVEVITPGVIIDE 111 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDIST---GIFKISTSNHDRLISDIMRIDPREIIF 199 L+ +NYL+A++ + ++ ++ID+ST GI ++L D+ + P+EII Sbjct: 112 DFLNDDINNYLVAISDYKDYYSFSYIDLSTSSLGIMFYENGFFEKLKRDLEKYSPKEIIV 171 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 SE + EY + P D I+ I +++NI + + G F + EK Sbjct: 172 SEN--FYYEYSEKLNLSRFLINRVPTWHLDKDIAIKTIKEHFNILGLSSLG-FDE-EKPY 227 Query: 260 AAAAISYIKKTQMVNKPTIGYPEREDIQ---STLFIDSAARSNLEILRTLSG-SREQSLL 315 + I + K + ++ DI S +F+D + NLE+++ + S + SL Sbjct: 228 YISIFLIINHIKNNLKNLLSNIDKIDINNDSSYMFLDDVTQVNLELVKNNNDFSSQYSLY 287 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 ++ T G RL E I +P+ + ++INTRLD + FF +N L +++ + D+ Sbjct: 288 SVLNDCKTAMGKRLLREFILNPILNISEINTRLDHVEFFCKNISLTVTLRETFINIWDIE 347 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEK--LKKLPQSLEK 433 R +SR+++ R KD I + + LF K++ E+ + K+ + Sbjct: 348 RIISRIQMKRYIKKDFLFIEKALSVFFTVKKLFDKHNFDYWNFDKFEEDSISKVYFLINS 407 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE----TKIK 489 +SS D+L ++ G D LD + L+ + + I +Y E +KI Sbjct: 408 AISSA-PDEL---------IKRGYDLKLDNLKDLKINANKYID----QYLESERLLSKIN 453 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 NLKI+ NN G F EVT S+ + + F+ Q +++ R+ T +LI LE I N Sbjct: 454 NLKIRKTNNRGLFFEVTKSNYA------QVPPHFMESQALNSSKRYKTEKLISLEVDINN 507 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 A ++ + E + F+ +++ ++ ++ L S+ A ID+ + LAK+ Y RP++ + Sbjct: 508 AEDNVVAFEQKIFDEIASNVVMHNKVLKKVSEFFAYIDLVVNFGYLAKKNEYKRPVLTSG 567 Query: 610 TNFIVKDGRHPI 621 +++ RHP+ Sbjct: 568 KEILLEKSRHPV 579 >gi|50288573|ref|XP_446716.1| hypothetical protein [Candida glabrata CBS 138] gi|49526024|emb|CAG59643.1| unnamed protein product [Candida glabrata] Length = 1216 Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 235/874 (26%), Positives = 401/874 (45%), Gaps = 96/874 (10%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP +QY EIKS D +VF++ G F+EL+ DA LA+ L G+ ++ + G Sbjct: 289 TPFEKQYWEIKSKMWDCIVFFKKGKFFELYEKDAFLANALFDWKLAGGGR---ANMQLAG 345 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR-GNKSLVRRNVVRLVTPGTLTEDQL 144 +P + H+ + I++G+++A +Q ES L + R G+K +V+R + ++T GTL + + Sbjct: 346 IPEMSFEHWASQFIQLGYKVAKVDQRESMLAKEMREGSKGIVKRELQCVLTSGTLVDGDM 405 Query: 145 LSPTDSNYLMAV---------------ARIRTEWAIAWIDISTGIFKISTSNHD----RL 185 + + Y +AV A + +A+ID STG +++ D RL Sbjct: 406 IHSDLATYCLAVREEPSNFYDITQPSSATYTKIFGVAFIDTSTGEVQMTEFLDDEECSRL 465 Query: 186 ISDIMRIDPREIIFSEKELSHAEYKSL---------------------FETLGNVAVAQP 224 + + ++ P+E+I + L + K + FE N +A Sbjct: 466 DTLMSQVRPKEVIIEKHNLCNLANKIVKFCAAPNALFNYIKPVEEFYDFEKTHNELLANE 525 Query: 225 NVFFDHSIS-ESRIADYYNITTVDTFGSFSQVEKTAAAAAI--SYIKKTQMVNKPTIGYP 281 +F + S + +YY+ F +F + + S I M N + Sbjct: 526 EAYFGTADGWPSVLKNYYDSNKKVGFSAFGGLLYYLKWLKLDESLI---SMKNFTEYNFV 582 Query: 282 EREDIQSTLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTD 340 + Q+T+ +D + NLEI + GS + +L K + SIT G R+ + + +PL Sbjct: 583 KS---QNTMVLDGISLQNLEIFSNSFDGSDKGTLFKLFNNSITPMGKRMMRKWLMNPLLL 639 Query: 341 STKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRS 400 I R DS+ + N L I+ + PD+ R LSR+ G + KD + I + Sbjct: 640 KEDIEKRQDSVELLMNNHELRTKIESVFTGLPDLERLLSRIHAGSLKVKDFDKV---ITA 696 Query: 401 GINILNLFLKNDLPEELRGAVEK-LKKLPQSLEKTLSSMLSDDLPTFKR-----DGGFLR 454 NIL + K EL GA++ ++P+ LE + S F R +G + Sbjct: 697 FENILQM-TKEIESNELHGALKSYFIQIPKQLENEVQHWES----AFDRRKAVEEGVIIP 751 Query: 455 D-GADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVL 513 + G + D++ + + + L Y + K NL+ K + Y IEV S+ + Sbjct: 752 EVGVEPDFDKSLEKLEGLENELNLLLKSYMKLLKTSNLQYKDSGKEIYTIEVPVSATKYV 811 Query: 514 KKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE-SFEILSNAIIEQ 572 + ++ N R+ + E+ L + A +E + +F + + Sbjct: 812 PAN------WVQMGANKNTKRYYSDEVRVLARSVAEARELHKTLENDLNFRLCRKFDTQY 865 Query: 573 SESLDNASQVIAIIDISIALAILAKEQNY--CRPII----DNST-----NFI-VKDGRHP 620 S +A ID + L ++ CRP+I D ST F+ K RHP Sbjct: 866 STVWMPTVTCLANIDCLLGLVRTSESLGTPSCRPVICDEVDPSTKCKKQGFVDFKSLRHP 925 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 L + +K FI ND L S + LLTG N GKST LR + VIMAQ+G Sbjct: 926 CF--NLDSRVNKDFIPNDVTLG----NKSPNIGLLTGANAAGKSTVLRMTCIAVIMAQLG 979 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 YVPA A + +D++ +R+G+ DN+ G+STF VE+ ET IL+ ATN+S ++LDE+GR Sbjct: 980 CYVPAESASLTPIDRIMTRLGANDNIMQGKSTFFVELSETKRILDLATNRSLLVLDELGR 1039 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH--NATLQVSDSNEG 798 G ++ DG SIA + + ++ + G ATH+ L +S + ++ V ++ Sbjct: 1040 GGSSNDGFSIAESVLHHVATHIQSLGFFATHYGSLGLSFRSHPQIKPMKMSILVDEATRN 1099 Query: 799 IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 + FL+K++ G ++ S+G+ V + G+ +++ A Sbjct: 1100 VTFLYKLVDGQSEGSFGMHVASMCGIAKSIVDNA 1133 >gi|260902365|ref|ZP_05910760.1| DNA mismatch repair protein MutS [Vibrio parahaemolyticus AQ4037] gi|308110566|gb|EFO48106.1| DNA mismatch repair protein MutS [Vibrio parahaemolyticus AQ4037] Length = 319 Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 140/327 (42%), Positives = 194/327 (59%), Gaps = 17/327 (5%) Query: 574 ESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKP 633 E + N + ++ +D+ LA A +YCRP + ++ GRHP+VE Q +S P Sbjct: 5 EQMQNLASAVSQMDVLQNLAERADSLDYCRPTLVKDAGIHIQAGRHPVVE----QVTSDP 60 Query: 634 FIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIV 693 FIAN +LS S K+ ++TGPNMGGKST++RQ ALI +MA +GSYVPA A IG + Sbjct: 61 FIANPIELSP-----SRKMLIITGPNMGGKSTYMRQTALIALMAHIGSYVPAESAQIGSL 115 Query: 694 DKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWA 753 D++F+R+G++D+LASGRSTFMVEM ETA+IL+ AT S V++DEIGRGT+T DGLS+AWA Sbjct: 116 DRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLVLMDEIGRGTSTYDGLSLAWA 175 Query: 754 TIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHS 813 + E+L L ATH+ ELT+L L N L + + I F+H V G A S Sbjct: 176 SAEWLATQIGAMTLFATHYFELTELPNLLPNLANVHLDAVEHGDSIAFMHAVQEGAASKS 235 Query: 814 YGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLS--KNDK 871 YG+ V LAG+P TVI A L E+L + P T + N LS Sbjct: 236 YGLAVAGLAGVPKTVIKNARTKLSQLEQLGQASDS------PRPSTVDVANQLSLIPEPS 289 Query: 872 LFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + ++ D ++P AL+ LY +K Sbjct: 290 EIEQALSNIDPDNLTPRQALEELYRLK 316 >gi|303321249|ref|XP_003070619.1| MutS domain III family protein [Coccidioides posadasii C735 delta SOWgp] gi|240110315|gb|EER28474.1| MutS domain III family protein [Coccidioides posadasii C735 delta SOWgp] Length = 1221 Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 221/867 (25%), Positives = 398/867 (45%), Gaps = 86/867 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P +QY EIK D++VF++ G FYEL+ +DA + + + LT R ++ M G Sbjct: 334 SPFEKQYWEIKQKFWDTVVFFKKGKFYELYENDATIGHQLFDLKLTDR-----VNMRMVG 388 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL-------EAKKRGNKSLVRRNVVRLVTPGT 138 VP + ++ + + G +IA +Q ES L + KK+G+K +++R + ++T GT Sbjct: 389 VPESSLEYWANQFVAKGFKIARVDQSESALGKEMRERDDKKKGDK-VIKRELSCVLTAGT 447 Query: 139 LTEDQLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFKISTSNHD----RLISDIM 190 L + +L S Y +AV + + ++++D +TG F ++ D + + + Sbjct: 448 LVDGAMLQDDMSTYCVAVKEALVDDLPAFGVSFVDTATGQFFLTEFTDDVDMTKFETLVA 507 Query: 191 RIDPREIIFSEKELSHAEYKSLFETLGNVAVA---QPNV-FFDHSISESRI--ADYYNIT 244 + P+E++ + +S + L + +P F+D S + + ++Y+ Sbjct: 508 QTRPQELLLEKGFMSPKALRILKNNTNPTTIWNYLKPEREFWDASTTRRELDASEYFVSV 567 Query: 245 TVDTFGSFSQVEKTAA---------AAAISYIKKTQM------VNKPTIGYPEREDIQST 289 D ++ +V + A A I Y++ ++ + T P R+ S+ Sbjct: 568 DQDNIEAWPEVLRQARHKELVISSFGALIQYLRMLKIERDLITIGNFTWYDPIRK--ASS 625 Query: 290 LFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRL 348 L +D NLE+ + G ++ +L + ++ IT G R+F + + PL DS KIN RL Sbjct: 626 LVLDGQTLINLEVFANSYDGGQDGTLFQLLNRCITPFGKRMFKQWVCHPLMDSKKINARL 685 Query: 349 DSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF 408 D+++ + + + L PD+ R +SR+ G + +D + +G ++L Sbjct: 686 DAVDALNADSSIRDQFSSQLTKMPDLERLISRVHAGTCKCQDFVRVLEGFEQIDYTMSLL 745 Query: 409 LKNDLPEELRG----AVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDET 464 + + + G ++ + L Q + + + D F G D DAS Sbjct: 746 KQTGSGDGVIGHLISSMPDMDGLLQYWKTAFDRVKAKDSGIFVPKAGVEED-FDASTQRI 804 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 + + +++ ++ E + + N Y +EV ++ K + Sbjct: 805 EEIEAKLDQLLKRVR----RELNSSAIIYRDNGKEIYQLEVPVKVRNIPKS-------WD 853 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 R+ EL L ++ A + I E E ++ A ++ A Sbjct: 854 QMSATKQAKRYYFPELRGLIRKLQEAQETHNQIVKEVTSRFYARFDENYQTWLAAVKITA 913 Query: 585 IIDISIALAILAKEQNY--CRPIIDNSTNFIV--KDGRHPIVEKTLKQQSSKPFIANDCD 640 +D I LA + Y CRP+ +S ++ ++ RHP + T+ FI ND Sbjct: 914 QLDCLIGLAKASTAIGYPSCRPVFVDSDRSVLEFQELRHPCMLATVGD-----FIPNDVK 968 Query: 641 LSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRV 700 L N+ + LLTG N GKST LR IMAQ+G YVP + A + VD++ SR+ Sbjct: 969 LG----GNTASINLLTGANAAGKSTVLRMTCTAAIMAQIGCYVPCASARLTPVDRIMSRL 1024 Query: 701 GSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHE 760 G+ DN+ +STF VE+ ET IL++AT++S VILDE+GRGT++ DG+++A A + ++ Sbjct: 1025 GANDNIFGAQSTFFVELSETKKILSEATSRSLVILDELGRGTSSYDGVAVAQAVLHHVAT 1084 Query: 761 TNRCRGLLATHFHELT-------DLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHS 813 G ATH+H L ++S R H V + + + FL+K+ G+A+ S Sbjct: 1085 HIGALGFFATHYHSLAAEFEGHPEISPRRMRIH-----VDEEDRRVTFLYKLEDGVAEGS 1139 Query: 814 YGIQVGKLAGLPNTVISRAYDILKTFE 840 +G+ + G+P VI A K +E Sbjct: 1140 FGMHCASMCGIPTKVIETAEVAAKEWE 1166 >gi|310790828|gb|EFQ26361.1| MutS domain V [Glomerella graminicola M1.001] Length = 1024 Score = 254 bits (649), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 137/316 (43%), Positives = 191/316 (60%), Gaps = 10/316 (3%) Query: 535 FTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAI 594 F E L ++ +A +S E F L A++ L + V+ +D++ + A Sbjct: 711 FHAPEWTRLGQQLEHARHSIRTEEQRVFLALRAAVVLNLVKLRRNAAVLDELDVATSFAR 770 Query: 595 LAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWL 654 LA EQ RP+++NST + GRHP VE L +Q + F+ NDC L + G+LWL Sbjct: 771 LAVEQGLTRPLLNNSTAHTIIGGRHPTVEGGLHEQG-RSFVRNDC-LVGGGGSSGGRLWL 828 Query: 655 LTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFM 714 +TGPNM GKSTFLRQNALI I+AQ+G YVPA YA +G+VD +FSRVGSADNL +STFM Sbjct: 829 ITGPNMAGKSTFLRQNALITILAQVGCYVPADYAELGVVDAIFSRVGSADNLYRDQSTFM 888 Query: 715 VEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHE 774 VEM+ETA IL AT +SFVI+DEIGRGT DG ++A+A + +L N+CR L ATHFH+ Sbjct: 889 VEMMETAQILRGATPRSFVIMDEIGRGTTPEDGTAVAYACLHHLVTVNKCRALFATHFHK 948 Query: 775 LTDLSKSLKRFHNATLQV--------SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPN 826 + DL+ + + V D G +++HK+ G+ S+ ++V +LA LP Sbjct: 949 VADLAVAEGLADDGKGGVEMYCTDVDEDGEGGFVYVHKLRKGVNRQSHALKVARLANLPG 1008 Query: 827 TVISRAYDILKTFEKL 842 IS A +L ++L Sbjct: 1009 EAISVAQKVLGIHQRL 1024 Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 97/426 (22%), Positives = 184/426 (43%), Gaps = 67/426 (15%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 + ++ R+G FYEL+F+ A L + + ++ + G + M G P + +++ L++ Sbjct: 121 NCVLLTRVGGFYELYFEHAEEYGPLLNLKVAQKKTNAGL-VSMAGFPFFQLDRFLKILVQ 179 Query: 101 -IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAV--- 156 + +A+ E+ + K + + R V R++TPGTL ++ + P +NY++A+ Sbjct: 180 DLNRYVAVAEEFPNNAPDKVKSGGLMHDRRVARIITPGTLIDENFMDPYANNYVLAIHAM 239 Query: 157 ---------------------------------------------ARIRTEWAIAWIDIS 171 A +AW+D+S Sbjct: 240 VAPSGGGADGLVATSAAEGEGEGGAPDSSSHSTTDRNVTSATGDPAAPPMSLGLAWLDLS 299 Query: 172 TGIFKISTSNHDRLISDIMRIDPREIIFS---EKELSHAEYKSLFETLGNVAVAQPNVFF 228 TG F ++ L S + RI P+E++ + + H + L E V + Sbjct: 300 TGQFYTQATDLSALSSILSRICPKEVVIDGGIQAQTDHGLFSILAEDRHLVTYS------ 353 Query: 229 DHSISESR-IADYYNITTVD----TFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPER 283 S E R ++D+ + + T +F+ E A + + Y+K+ + + P R Sbjct: 354 --SFGEIRCLSDWAPMLESEIPPATRDAFTDGEVMAGSLLLHYVKEQLLGLSMKLQPPMR 411 Query: 284 EDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDST 342 + + ID + +LEI +T+ G+ SLL I ++T +G RL + +++P T Sbjct: 412 HENMQIMSIDKNSMRSLEIKQTIRDGNFRGSLLHAIRRTVTKSGARLLNDWVSAPSTSID 471 Query: 343 KINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGI 402 I R D + FI+ P L + I +L+ S D R + + +GRG+P D+ + + I S Sbjct: 472 VIKLRQDLVARFIEEPDLRDAIVLLLRRSHDSQRLVQKFALGRGDPDDLVALANTIHSTD 531 Query: 403 NILNLF 408 +I L Sbjct: 532 SIRQLL 537 >gi|328718270|ref|XP_001946118.2| PREDICTED: DNA mismatch repair protein Msh6-like [Acyrthosiphon pisum] Length = 1185 Score = 254 bits (649), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 250/958 (26%), Positives = 437/958 (45%), Gaps = 158/958 (16%) Query: 7 SPQKLYSEQIDLEENLKSS-TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRC 65 +P+ LY + E+ K + TP +RQ+ E+K+ + D ++F+++G FYE++ DA+ ++ Sbjct: 234 NPRTLY-----VPEDFKLTLTPGVRQWWELKAQHFDCILFFKVGKFYEMYHMDAVTTAKE 288 Query: 66 LGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESP------LEAKK 119 L + ++ D G P + LI+ G+ +A EQ E+P ++ K Sbjct: 289 LNLL------YMKGDFAHVGFPETAYGRFSAILIEKGYTVARIEQTETPDMMTERCKSLK 342 Query: 120 RGNK--SLVRRNVVRLVTPGTLTE---DQLLSPTDSNYLMAVARIRTE-----WAIAWID 169 + K +VRR + R+ T GT T D + ++++L+A++ + + +ID Sbjct: 343 KSTKFDKVVRREICRITTKGTRTFGIIDGETNDAENSFLIAISEKEISSSTSLYGVCFID 402 Query: 170 ISTGIFKISTSNHD----RLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQ-- 223 S G+F + D RL + P +++F +L+ K + +T+ + AV Sbjct: 403 TSIGLFHLGQFEDDCHCSRLRTLCAHYPPVQVLFERNKLT-VRTKKVIDTMLSSAVKDAL 461 Query: 224 -PNVFFDHSISESRI----ADYY----NIT---TVDTF-GSFSQVEKTA----------A 260 P++ F S S++ I DY+ N+ + TF GS S ++ A Sbjct: 462 IPDIEFWPS-SKTLITLAEGDYFKHDNNVVYPEKLKTFLGSDSDLQLNANDECEFGIRSL 520 Query: 261 AAAISYIKKTQM-----------VNKP----TIGYPEREDIQST-LFIDSAARSNLEILR 304 A I Y+++ +M + KP ++ +++I S + +D+ NL IL Sbjct: 521 GAVIWYLQRCKMDFQLLSRGRFDIYKPIDVKSVELTNQDNINSKHMILDAITLKNLHILE 580 Query: 305 TLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPI 364 +GS +LL +++ T G RL + + +PLT + I R ++I+ I P L+ I Sbjct: 581 NSAGSNAGTLLNKLNHCSTPFGKRLLHQWLCNPLTTISSIKARQNAISSLIVIPDLMQEI 640 Query: 365 QKILKSSPDVPRSLSRL--KIGRGEPKDIAVIR---------------------DGIRSG 401 + L S PD+ R SR+ + G D A R G R+ Sbjct: 641 RSELASLPDLERLFSRIYSQSSNGVESDHAETRAVYFEEKTYSKRKIIDFISILKGFRTS 700 Query: 402 INILNLFLKNDLPEE-----------------LRGAVEKLKKLPQSLEKTLSSMLSDDLP 444 +NI+ F K D+ +E + G L +L + E + D Sbjct: 701 VNIMEKFQKADIIKENSESNLLAAICNYPNGSVPGVFPHLTELLDNFENSF-----DHDE 755 Query: 445 TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH--NNNLGYF 502 K F G D D+ ++ ++ K + L+ E+ K + + ++ Y Sbjct: 756 AMKHGRIFPEPGMD---DQYDTVLEKIKEVDIELKSYLKEQCKHFGCTVNYFGSDKKRYQ 812 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 +EV +++ + D + + RFTT +L ++ + + + + Sbjct: 813 LEVPDAASK------RAGDGYELQNQRKGYKRFTTNRTKELLEKMMSYEQEKIDVLKDLR 866 Query: 563 EILSNAIIEQSESLDNASQVIAIIDISIALA--ILAKEQNYCRP-----IIDNSTNFIVK 615 E + + ++ E +NA Q +A +D+ ++LA +E+ C P II + Sbjct: 867 ERVFSRFCDKFEEWNNAIQCLATLDVFMSLAEYCRCEEEVMCIPTFIPAIIGKKPLVELI 926 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKN-SGKLWLLTGPNMGGKSTFLRQNALIV 674 +GR+P + FI ND + D + L L+TGPNMGGKST +RQ +I Sbjct: 927 EGRYPC------GSGGESFIPNDTIIGKEEDGTWNSSLILVTGPNMGGKSTLMRQLGIIT 980 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 +MA MG VPA + VD++F+R+G+ DN+ +G STF VE+ ET++IL+ A+ S V+ Sbjct: 981 VMAHMGCRVPAKSLLLNPVDRIFTRIGANDNIIAGESTFFVELCETSAILHHASRFSLVL 1040 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTD---LSKSLKRFHNATLQ 791 +DE+GRGT+T DG +IA A + L + +CR L +TH+H L + ++ + H A + Sbjct: 1041 VDELGRGTSTYDGTAIASAVVTELVQ-KQCRTLFSTHYHSLVEDFKMNPLVALGHMACMV 1099 Query: 792 VSD---------SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 +D + E I FL+K G SYG +LAG+P +I K FE Sbjct: 1100 ENDETNEIDTEQTQETITFLYKFANGACPKSYGFNAARLAGMPADIIKVGLRRSKEFE 1157 >gi|320581644|gb|EFW95863.1| hypothetical protein HPODL_2146 [Pichia angusta DL-1] Length = 1638 Score = 254 bits (649), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 232/880 (26%), Positives = 411/880 (46%), Gaps = 92/880 (10%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 T +QY EIKS DS+VF++ G F+EL+ DA + + + L G+ ++ + G Sbjct: 300 TAFEKQYWEIKSKMWDSIVFFKKGKFFELYEKDADIGHQKFDLKLAGTGR---ANMRLAG 356 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR------GNKSLVRRNVVRLVTPGTL 139 +P + +++ +K I G+++A +Q ES L + R + +++R + ++T GTL Sbjct: 357 IPEMSFDYWAKKFIDEGYKVAKVDQKESLLAKEIREKNANTKDDKVIKRELSCVLTCGTL 416 Query: 140 TEDQLLSPTDSNYLMAVARIRTE-----WAIAWIDISTGIFKISTSNHD----RLISDIM 190 T++ +LS S Y +++ + + + ++D +TG +++ D +L + + Sbjct: 417 TDEGMLSDEMSRYCLSLKEVTNNDNSKTFGVCFVDTATGKIQLTQFEDDVDCNKLETLLA 476 Query: 191 RIDPREIIFSEKELS-------------HAEYKSL------------FETLGNVAVAQPN 225 +I P E++ + +S HA + L FE L + N Sbjct: 477 QIQPMEVLIEKSRVSQLVLRMLKFNSQPHATFNFLKPADEFWTSEIAFEQLTRGKYFEAN 536 Query: 226 VFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKP-TIGYPERE 284 D +++Y NI V+ + S V +A A + Y+K ++ ++G E+ Sbjct: 537 DLDD-------LSNYPNIL-VEYYESNKNVGFSAFGALLWYLKSLKLDTALISMGNIEQY 588 Query: 285 DIQSTLFIDSAAR------SNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASP 337 D T F D+ R NLEI + S + +L K ++ +++ G R F + P Sbjct: 589 DPYKTSFSDTCMRLDGVTLQNLEIFSNSFDQSDKGTLFKILNRAVSPFGKRTFKSWVTHP 648 Query: 338 LTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG 397 L I +RLDS+ + + L ++ L PD+ R L+R+ G + KD A G Sbjct: 649 LMSRKTIESRLDSVEILMNDGDLKYLLESKLGKLPDLERLLARIHSGNLKVKDFARCVTG 708 Query: 398 IRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKR-----DGGF 452 ++++ + LK+ PE + +L ++ S L +S+ F R DG Sbjct: 709 FECIVSLVKI-LKSTYPEGTQRLGGELGRILDSFPPELPECVSNWSNAFDRELAVKDGIL 767 Query: 453 LRD-GADASLDET----RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTS 507 + + G + DE+ + L + +RI++ +Y E K + + K + Y IEV S Sbjct: 768 VPELGVEPEFDESNQKIKELEKELERILS----QYRREFKCQEMCYKDSGKEIYLIEVPS 823 Query: 508 SSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEI-LS 566 + S + KD + S R+ + E+ L ++ A +I ES + + Sbjct: 824 KAISRIPKDWQ------QMAATSKCKRYWSTEVKKLVRKLMEARELHKIIG-ESLQARMY 876 Query: 567 NAIIEQSESLDNASQVIAIIDISIALAILAKEQNY--CRP-IIDNSTNFI-VKDGRHPIV 622 + ++ + +A +D ++LA ++ CRP ID+++ I +D RHP Sbjct: 877 GRFMGDYPIWSSSIKAVAQLDCILSLARASESLGMPACRPEFIDSASAQIEFQDLRHPCF 936 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 SK FI ND L + G LLTG N GKST LR + IMAQ+G + Sbjct: 937 IPG-GITGSKDFIPNDISLGVDQKDHIG---LLTGANAAGKSTVLRMTCVATIMAQIGCF 992 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA A + VD + +R+G+ DN+ G+STF VE+ ET IL T +S +ILDE+GRG Sbjct: 993 VPAKSAKLTPVDTIMTRLGANDNIMQGKSTFYVELSETKKILESCTPRSLIILDELGRGG 1052 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH--NATLQVSDSNEGII 800 ++ DG +IA A + ++ + G ATH+ L + + R + V +++ I Sbjct: 1053 SSSDGFAIAEAVLHHIATHIQSIGFFATHYATLGNSFINHPRVKPLRMGILVDENSRNIT 1112 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 FL+K+ G + S+G+ V + G+P ++ A + +E Sbjct: 1113 FLYKLESGRSSGSFGMHVAAMCGVPKNIVDNAEQAAEKWE 1152 >gi|196006291|ref|XP_002113012.1| hypothetical protein TRIADDRAFT_56718 [Trichoplax adhaerens] gi|190585053|gb|EDV25122.1| hypothetical protein TRIADDRAFT_56718 [Trichoplax adhaerens] Length = 934 Score = 254 bits (648), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 183/572 (31%), Positives = 291/572 (50%), Gaps = 46/572 (8%) Query: 285 DIQSTLFIDSAARSNLEILRTLS--GSREQSLLKTIDYSITGAGGRLFAERIASPLTDST 342 D+ + +DSAA L + + S G++ + L+ ++Y T G RL A+ + PL D Sbjct: 288 DLSQFMKLDSAAVRALNLFPSPSDAGNKLRCLMGVLNYCKTAPGQRLLAQWLKQPLMDIA 347 Query: 343 KINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSG 401 KI RL+ ++ F+ + L +Q+ LK PD+ R + + R +D +R + Sbjct: 348 KIEERLNLVDVFVDDTELRQSVQEDHLKRFPDLQRLAKKFQRSRANLQD--CVR--VYQS 403 Query: 402 INILNLFLKNDLPEELRGAVEKLKKLPQSL-EKTLSSMLSD------------DLPTFKR 448 IN +N +K L G K L +++ LS + +D DL + Sbjct: 404 INRVNCLIK-----ALVGYDSAYKDLIRNMYSNPLSDLTTDFQKYQELIETTVDLDSVAN 458 Query: 449 DGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEV 505 ++ D L E R+ D I+ L A + + K++K++ N+ GY+ V Sbjct: 459 HEFVIKPSIDPDLQEYRNQMDDLIEQISRLLSLAARDLGLEANKSIKLESNSQFGYYFRV 518 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEI- 564 T +K L S RF+ T + RFT L L N+ S + E F + Sbjct: 519 TLKE----EKALRSNKRFMMIDTNKHGVRFTNNNLESL-NKSLQEIKSMYDGKQEDFAVE 573 Query: 565 LSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN--YCRPIIDNSTNFIVK--DGRHP 620 + N E L + S++IA +D+ ++ A + Y RP I ++++ I++ + RHP Sbjct: 574 VINIASGYYEPLQSLSRIIAHLDVIVSFAHASTNAPVPYVRPTILDTSDRIIELTEARHP 633 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +E Q FI ND + K+ + ++TGPNMGGKST++RQ +IV+MAQ+G Sbjct: 634 CLE----MQDDVAFIPNDVKFA----KDDAEFIIITGPNMGGKSTYIRQIGVIVLMAQIG 685 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 +VP S+A I I+D + +RVG+ D+ G STFM EM+ET+ IL AT +S +I+DE+GR Sbjct: 686 CFVPCSFARISIIDCILARVGAGDSQLKGVSTFMSEMLETSYILKTATEKSLIIIDELGR 745 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII 800 GT+T DG +AWA E + + L ATHFHELT L+ +K N + + E + Sbjct: 746 GTSTYDGFGLAWAISESIAKDIGAFTLFATHFHELTALANDIKSVKNFHVSAMTTEEALT 805 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 L++V PG+ D S+GI V +LA P V++ A Sbjct: 806 LLYRVKPGVCDQSFGIHVAELAHFPENVVTHA 837 >gi|254578938|ref|XP_002495455.1| ZYRO0B11792p [Zygosaccharomyces rouxii] gi|238938345|emb|CAR26522.1| ZYRO0B11792p [Zygosaccharomyces rouxii] Length = 1210 Score = 254 bits (648), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 228/886 (25%), Positives = 415/886 (46%), Gaps = 101/886 (11%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP +QY EIKS D +VF++ G F+EL+ DA LA+ + G+ ++ + G Sbjct: 284 TPFEKQYWEIKSSMWDCIVFFKKGKFFELYEKDAALANNLFDWRIAGGGR---ANMQLAG 340 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR-GNKSLVRRNVVRLVTPGTLTEDQL 144 +P + +++ + I+ G+++A +Q ES L + R G+K +V+R + ++T GTLT+ + Sbjct: 341 IPEMSFDYWASQFIQYGYKVAKVDQRESMLAKEMREGSKGIVQRELQCVLTSGTLTDGNM 400 Query: 145 LSPTDSNYLMAV------------ARIRTE------WAIAWIDISTGIFKISTSNHD--- 183 L + Y +AV + TE + +A+ID STG ++ + D Sbjct: 401 LQSDLATYCLAVREESGNYYDLENGQDLTETAGKRIFGVAFIDTSTGEIELIEFDDDNEC 460 Query: 184 -RLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDH------------ 230 +L + + ++ P+E+I + LS+ +K + A PN F++ Sbjct: 461 TKLDTIMSQLTPKEVIMEKSNLSNLAHKIVKYN------AAPNAIFNYVKPLEEFYDFER 514 Query: 231 -----SISESRI---ADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKP-TIG-Y 280 + SE + +++ + + ++ +A + Y+K ++ +IG Sbjct: 515 TFDELTSSEHKYFPDMNHWPLVLKTYYEKGKKIGFSAFGGLLHYLKWLKLDESLISIGNI 574 Query: 281 PEREDI--QSTLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASP 337 E I Q++L +D NLEI + G+ + +L K + ++T G R+ + P Sbjct: 575 REYNPIKSQNSLVLDGVTLQNLEIFTNSFDGTDKGTLFKLFNKALTPMGKRMMKRWLMHP 634 Query: 338 LTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIR-D 396 L + I RLD+++ + + L + ++ L PD+ R ++R+ G + V+ D Sbjct: 635 LLHRSDIEKRLDTVDCLLSDTDLRDLLETALSKLPDLERLVARVHSG-----SLNVMNFD 689 Query: 397 GIRSGINILNLFLKNDLPEELRGAVEK-LKKLPQSLEKTLSSMLSDDLPTFKRDGGFL-- 453 + G ++ ++ ELRG++ + +P S+ + + + + T G L Sbjct: 690 KVIQGFEVITKLIRELTNYELRGSLATYVSSVPSSMFEDVDNWSNAFDRTKAVTEGILIP 749 Query: 454 RDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVL 513 G + DE+ + + + L Y ++ K +++ K + Y IEV S+ + Sbjct: 750 HRGVEPEFDESLDKIKELENELDDLLRTYKKQFKCSSVQYKDSGKEIYLIEVPISATKHV 809 Query: 514 KKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQS 573 D ++ N R+ + E+ L + A +E E L N + + Sbjct: 810 PSD------WMQMGANKNFKRYYSDEVKQLARSVAEARELHKALE----EDLKNRLCRKF 859 Query: 574 ESLDNAS-----QVIAIIDISIALAILAKEQNY--CRPIIDNSTNF---IVKDG------ 617 ++ +S I+ ID +AL ++ + CRP + + + I ++G Sbjct: 860 DTRYESSWLPTIHAISNIDCLLALVRTSESLGFPSCRPEVVDEKDLETGIAQNGFVKFKS 919 Query: 618 -RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 RHP L + K FI ND +L KN ++ LLTG N GKST LR + VIM Sbjct: 920 LRHPCF--NLGTTNPKEFIPNDVELG----KNFPQIGLLTGANAAGKSTILRMTCIAVIM 973 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQMG YVP A + +DK+ +R+G+ DN+ G+STF VE+ ET I++ ATN+S ++LD Sbjct: 974 AQMGCYVPCESAVMTPMDKIMTRLGANDNIMQGKSTFFVELSETKKIMDLATNRSLLVLD 1033 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDL--SKSLKRFHNATLQVSD 794 E+GRG ++ DG +IA A + + + G ATH+ L + S+ R + V + Sbjct: 1034 ELGRGGSSSDGFAIAEAVLHHAATHTQSLGFFATHYATLGHSFENHSMIRPLRMGILVDE 1093 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + + FL+K+ G ++ S+G+ V + G+P V+ A T E Sbjct: 1094 NTRKVTFLYKLEEGQSEGSFGMHVASMCGIPKEVVDNAQVAADTLE 1139 >gi|119482682|ref|XP_001261369.1| DNA mismatch repair protein Msh3, putative [Neosartorya fischeri NRRL 181] gi|190359847|sp|A1DCB2|MSH3_NEOFI RecName: Full=DNA mismatch repair protein msh3; AltName: Full=MutS protein homolog 3 gi|119409524|gb|EAW19472.1| DNA mismatch repair protein Msh3, putative [Neosartorya fischeri NRRL 181] Length = 1117 Score = 254 bits (648), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 241/899 (26%), Positives = 428/899 (47%), Gaps = 126/899 (14%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK---------- 75 TP+ +Q IEIK + D+++ +G + F +DA +A++ L I GK Sbjct: 205 TPLEKQVIEIKRKHMDTVLVIEVGYKFRFFGEDARIAAKELSIVCIP-GKMRFDEHPSEA 263 Query: 76 HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLV 134 HL + +PVH + ++++L+ G+++ + Q+E + L+A + R + L Sbjct: 264 HLDR-FASASIPVHRLHVHVKRLVSAGYKVGVVRQLETAALKAVGDNRNAPFSRKLTNLY 322 Query: 135 TPGTLTED----QLLSPTDSN-------YLMAVARIRTEWAIAWID---ISTGIFKISTS 180 T GT +D +P S Y++ + A W + + GI + + Sbjct: 323 TKGTYVDDVEGLDGATPAASGGASPATGYMLCITETN---AKGWGNDEKVHVGIVAVQPN 379 Query: 181 NHDRLISD-------------IMRIDPREIIFSEKELSHAEYK-------SLFETLGN-- 218 D + D ++ I P E++ ELS A K S T G+ Sbjct: 380 TGDIIYDDFEDGFMRSEVEARLLHIAPCELVIV-GELSKATEKLVQHLSGSKLNTFGDKV 438 Query: 219 ----VAVAQPNVFFDHSISESRIADYYNI-----TTVDTFGSFSQVEKTAAAAAISYIKK 269 VA + V HS +A++Y T D + + ++K + Sbjct: 439 RVDRVAKKKTAVAESHS----HVANFYAAKLKAANTADDAPASNLLQKVLNLPEQVTVCL 494 Query: 270 TQMVNKPT----------IGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTI 318 + M+ T Y + +S + +++ +LEI + + S + SL T+ Sbjct: 495 SAMIEHLTEYGLEHIFELTKYFQHFSSRSHMLLNANTLVSLEIYQNQTDHSAKGSLFWTL 554 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQ--KIL--KSSPDV 374 D + T G RL + + PL D ++ R++++ +++P ++ KIL + D+ Sbjct: 555 DRTQTRFGQRLLRKWVGRPLLDKERLEERVNAVEE-LKSPDRTVQVERLKILLGRIKSDL 613 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEE------LRGAVEKLKKLP 428 ++L R+ G+ ++ + +++ I ++ PE+ + G E + ++P Sbjct: 614 EKNLIRIYYGKCTRPELLTVLQTLQT---IAQEYVDVKTPEDSGFTSPILG--EAIARVP 668 Query: 429 QSLEKTLSSMLSDDLPTFKRDGG--FLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 LE + + ++ + D F R+ +ET + + K IAS++ + E Sbjct: 669 SILEDVVKFLNKINMHAARNDDKYEFFRES-----EETEGISEH-KCGIASVEHELEEHR 722 Query: 487 KI-----KNLKIKHNNNLG--YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLE 539 + K K+ + + G Y IEV +++A++ + ++ L+RF T E Sbjct: 723 SVAAGILKWPKVTYVTSSGIEYLIEVENTAAAIKRVPAS----WVKVSGTKKLSRFHTPE 778 Query: 540 LIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQ 599 +I L + + ++F L I +S ++ Q +A +D ++LA +A + Sbjct: 779 VIQLLRQRDQHKEALAAACDQAFAALLAEIATNYQSFRDSVQSLATLDCLLSLAAIASQP 838 Query: 600 NYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPN 659 Y +P + T V+ GRHP+VE+ L ++ ND DL D + + L+TGPN Sbjct: 839 GYVKPEYTDQTCIHVEQGRHPMVEQLLLDS----YVPNDIDL----DSDRTRALLVTGPN 890 Query: 660 MGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIE 719 MGGKS+++RQ ALI IMAQ+GSYVPA A +G++D +F+R+G+ DN+ +G STFMVE+ E Sbjct: 891 MGGKSSYVRQIALIAIMAQIGSYVPARSAKLGMLDAVFTRMGAFDNMLAGESTFMVELSE 950 Query: 720 TASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLS 779 TA IL QAT +S VILDE+GRGT+T DG++IA A ++Y+ T R L TH+ L++++ Sbjct: 951 TADILKQATPRSLVILDELGRGTSTHDGVAIAQAVLDYMVRTIRSLTLFITHYQHLSNMA 1010 Query: 780 KSL--KRFHNATLQVSDSNEG----IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 +S N ++ ++S G I FL++V G+A SYG+ V +LA LP ++ A Sbjct: 1011 QSFPNHELRNVHMRFTESGSGKDEEITFLYEVGEGVAHRSYGLNVARLANLPAPLLEVA 1069 >gi|225389117|ref|ZP_03758841.1| hypothetical protein CLOSTASPAR_02863 [Clostridium asparagiforme DSM 15981] gi|225044816|gb|EEG55062.1| hypothetical protein CLOSTASPAR_02863 [Clostridium asparagiforme DSM 15981] Length = 525 Score = 254 bits (648), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 172/541 (31%), Positives = 280/541 (51%), Gaps = 25/541 (4%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+ Y+E K PD ++FYR+GDFYE+FFDDAL S+ L ITLT + L + PMCGVP Sbjct: 1 MMQHYMETKKQYPDCVLFYRLGDFYEMFFDDALTVSKELEITLTGKECGLPERAPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H + Y+ +L++ G+++AI EQ+E P +A K LV+R V+R+VTPGT+T Q L Sbjct: 61 FHAVDSYLNRLVQKGYKVAIAEQMEDPKQA-----KGLVKREVIRVVTPGTITSAQALDE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR-LISDIMRIDPREII----FSEK 202 T +NYLM + + ++ DISTG F ++ + DR L +I + P EII F Sbjct: 116 TKNNYLMGIVCTDGGYGVSTADISTGDFLVTEVSTDRELFDEINKFSPSEIICNNAFYVS 175 Query: 203 ELSHAEYKSLFETLGNVAV-AQPNVFFDHSISESRIADYYNITTVDTFG-SFSQVEKTAA 260 + E K+ + +VAV A + FF + +++ + ++ G AA Sbjct: 176 GVDIEELKNRY----HVAVSALDSHFFGEESCHKVLREHFRVGSLSGLGLEDYGTGIIAA 231 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTID 319 A + Y+ +TQ I + + ID++ R NLE++ T+ +++ +LL +D Sbjct: 232 GAVLQYMYETQKSTLEHITTIKPYSTGQFMIIDTSTRRNLELVETMREKQKRGTLLWVLD 291 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL I PL +I R ++ N I I++ L D+ R + Sbjct: 292 KTKTAMGARLLRAYIEQPLIHREEIIARQSAVEELNMNYISREEIREYLNPVYDLERLIG 351 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML 439 R+ P+D+ + + I L + P L+ + + L + L + + S + Sbjct: 352 RISYKTANPRDLISFCNSLEMLPYIKRLLEEFSSP-LLKALADDMDPL-EDLFELIRSAI 409 Query: 440 SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNL 499 ++ P R+GG +RDG + D+ R+ + + K +A L+ + E+T IK LK+K N Sbjct: 410 VEEPPITLREGGIIRDGYNEEADKLRAAKTEGKTWLAELEAREREKTGIKGLKVKFNKVF 469 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GY+ EVT+S +++ D F+ +QT++N RFTT EL LE I A + + +E Sbjct: 470 GYYFEVTNSFKNMV------PDYFVRKQTLTNAERFTTDELKQLEEIIMGAEDKLVSLEY 523 Query: 560 E 560 + Sbjct: 524 D 524 >gi|1588283|prf||2208298A MSH6 gene Length = 1242 Score = 253 bits (647), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 231/886 (26%), Positives = 404/886 (45%), Gaps = 117/886 (13%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP +QY EIKS D +VF++ G +EL+ DALLA+ + + G+ ++ + G Sbjct: 312 TPFEKQYWEIKSKMWDCIVFFKKGKEFELYEKDALLANALFDLKIAGGGR---ANMQLAG 368 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR-GNKSLVRRNVVRLVTPGTLTEDQL 144 +P + ++ + I++G+++A +Q ES L + R G+K +V+R + ++T GTLT+ + Sbjct: 369 IPEMSFEYWAAQFIQMGYKVAKVDQRESMLAKEMREGSKGIVKRELQCILTSGTLTDGDM 428 Query: 145 LSPTDSNYLMA-------------------VARIRTE-WAIAWIDISTGIFKI----STS 180 L + + +A V ++ T+ + A+ID +TG ++ S Sbjct: 429 LHSDLATFCLAIREEPGNFYNETQLDSSTIVQKLNTKIFGAAFIDTATGELQMLEFEDDS 488 Query: 181 NHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAV---AQPNVFFDHSISESRI 237 +L + + ++ P E++ LS TL N V + PN F+ + Sbjct: 489 ECTKLDTLMSQVRPMEVVMERNNLS---------TLANKIVKFNSAPNAIFNEVKAGEEF 539 Query: 238 AD----YYNITTVDTFG----------SFSQVEKTAAAAAIS--------YIKKTQMVNK 275 D Y I + + F S+ K +A +++ Sbjct: 540 YDCDKTYAEIISEEYFSTEEDWPEVLKSYYDTGKKVGFSAFGGLLYYLKWLKLDKNLISM 599 Query: 276 PTIGYPEREDIQSTLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERI 334 I + Q ++ +D NLEI + GS + +L K + +IT G R+ + + Sbjct: 600 KNIKEYDFVKSQHSMVLDGITLQNLEIFSNSFDGSDKGTLFKLFNRAITPMGKRMMKKWL 659 Query: 335 ASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVI 394 PL I +RLDS++ +Q+ L ++ PD+ R L+R+ + KD + Sbjct: 660 MHPLLRKNDIESRLDSVDSLLQDITLREQLEITFSKLPDLERMLARIHSRTIKVKDFEKV 719 Query: 395 RDGIRSGINILNLFLKNDLPEEL--------RGAVEKLKKLPQSLEKTLSSMLSDDLPTF 446 + I + + NDL ++ G VE +K + E+ + + +P Sbjct: 720 ITAFETIIELQDSLKNNDLKGDVSKYISSFPEGLVEAVKSWTNAFERQKAINENIIVPQR 779 Query: 447 KRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVT 506 D F D S+D + L D+ I+ + Y ++ K N++ K + Y IE+ Sbjct: 780 GFDIEF-----DKSMDRIQELEDELMEIL----MTYRKQFKCSNIQYKDSGKEIYTIEIP 830 Query: 507 SSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILS 566 S+ K++ S ++ R+ + E+ L + A +E E L Sbjct: 831 ISAT----KNVPS--NWVQMAANKTYKRYYSDEVRALARSMAEAKEIHKTLE----EDLK 880 Query: 567 NAIIEQSESLDNA---SQVIAIIDISIALAILAKEQNY-----CRPII----DNSTN--- 611 N + ++ ++ N + AI +I LAI + Y CRP I D+ TN Sbjct: 881 NRLCQKFDAHYNTIWMPTIQAISNIDCLLAI-TRTSEYLGAPSCRPTIVDEVDSKTNTQL 939 Query: 612 --FI-VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 F+ K RHP L ++K FI ND +L K +L LLTG N GKST LR Sbjct: 940 NGFLKFKSLRHPCF--NLGATTAKDFIPNDIELG----KEQPRLGLLTGANAAGKSTILR 993 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 + VIMAQMG YVP A + +D++ +R+G+ DN+ G+STF VE+ ET IL+ AT Sbjct: 994 MACIAVIMAQMGCYVPCESAVLTPIDRIMTRLGANDNIMQGKSTFFVELAETKKILDMAT 1053 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH-- 786 N+S +++DE+GRG ++ DG +IA + + ++ + G ATH+ L K + Sbjct: 1054 NRSLLVVDELGRGGSSSDGFAIAESVLHHVATHIQSLGFFATHYGTLASSFKHHPQVRPL 1113 Query: 787 NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 ++ V ++ + FL+K++ G ++ S+G+ V + G+ +I A Sbjct: 1114 KMSILVDEATRNVTFLYKMLEGQSEGSFGMHVASMCGISKEIIDNA 1159 >gi|297516002|ref|ZP_06934388.1| DNA mismatch repair protein MutS [Escherichia coli OP50] Length = 528 Score = 253 bits (647), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 175/556 (31%), Positives = 280/556 (50%), Gaps = 53/556 (9%) Query: 20 ENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGK 79 EN + TPMM+QY+ +K+ +P+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ Sbjct: 5 ENFDAHTPMMQQYLRLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL 139 IPM G+P H +Y+ KL+ G +AICEQI P +K V R VVR+VTPGT+ Sbjct: 65 PIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTI 119 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREII 198 +++ LL N L A+ + + A +DIS+G F++S ++ + + +++ R +P E++ Sbjct: 120 SDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELL 179 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKT 258 ++E AE SL E + ++ I +R T D G F VE Sbjct: 180 YAE---DFAEM-SLIEG---RRGLRRRPLWEFEIDTARQQLNLQFGTRDLVG-FG-VENA 230 Query: 259 -----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQS 313 AA + Y K TQ P I E Q ++ +D+A R NLEI + L+G E + Sbjct: 231 PRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENT 290 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L +D ++T G R+ + P+ D+ + R +I +Q+ +Q +L+ D Sbjct: 291 LASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIG-ALQD--FTAGLQPVLRQVGD 347 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLP----- 428 + R L+RL + P+D+A +R + LP ELR +E + P Sbjct: 348 LERILARLALRTARPRDLARMRHAFQQ------------LP-ELRAQLETVDSAPVQALR 394 Query: 429 ------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L L + D P RDGG + G + LDE R+L D + + L+++ Sbjct: 395 EKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRE 454 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 E T + LK+ N GY+I+++ + + + ++ RQT+ N R+ EL + Sbjct: 455 RERTGLDTLKVGFNAVHGYYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKE 508 Query: 543 LENRITNATNSALLIE 558 E+++ + AL +E Sbjct: 509 YEDKVLTSKGKALALE 524 >gi|119484238|ref|XP_001262022.1| DNA mismatch repair protein Msh1, putative [Neosartorya fischeri NRRL 181] gi|119410178|gb|EAW20125.1| DNA mismatch repair protein Msh1, putative [Neosartorya fischeri NRRL 181] Length = 1018 Score = 253 bits (647), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 153/432 (35%), Positives = 238/432 (55%), Gaps = 19/432 (4%) Query: 413 LPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRS----LR 468 + E L G VE L K ++ S +++ T + +R A A+L E L+ Sbjct: 580 MSEGLPGEVETLPKKVRAKNSDQSKASTEE--TTAPETWIMRRSASAALLELHESLDRLQ 637 Query: 469 DQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQT 528 D+ R+ L+ E L ++ + LG+ V A + ++ LE + + Sbjct: 638 DEKTRLTQRLR----EAVGSSALSLRWTSGLGHICHV--KGAKISQQSLEELGVTRNVSS 691 Query: 529 MSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDI 588 + F L +R+ E FE L +I + + V+ +D+ Sbjct: 692 TKSTRSFYLPAWTALGDRMDQVKVQIRQEEQAIFETLRREVILNLVKIRRNAAVMDELDV 751 Query: 589 SIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKN 648 + + A LA+EQ RPI+ + + GRHP V+ L++Q + F++NDC L + Sbjct: 752 ACSFATLAEEQRLVRPILTSGVTHKIVGGRHPTVKLGLEEQG-RQFVSNDCFLG-----D 805 Query: 649 SGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLAS 708 S ++WL+TGPNM GKSTFLRQNALI I+AQ+GS+VPA YA IGIVD++FSR+G+AD+L Sbjct: 806 SERIWLITGPNMAGKSTFLRQNALITILAQVGSFVPAEYAEIGIVDQIFSRIGAADDLFR 865 Query: 709 GRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLL 768 +STFMVEM+ETA+IL QAT +SFVI+DE+GRGT DG +I++A + +LH N+CR L Sbjct: 866 DQSTFMVEMLETATILKQATARSFVIMDEVGRGTTPEDGTAISFACLHHLHYRNKCRTLF 925 Query: 769 ATHFHELTDLSKSLKRFHNATLQVSDSNEG-IIFLHKVIPGIADHSYGIQVGKLAGLPNT 827 ATHFH L D++ + V ++ G F+H++ G+ +S+ ++V +LAGLP Sbjct: 926 ATHFHALADMTDDFEALGRYCTDVKETASGSFSFVHRLRKGVNRNSHALKVAQLAGLPKE 985 Query: 828 VISRAYDILKTF 839 + A + ++ Sbjct: 986 TLEMASRVRQSL 997 Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 126/469 (26%), Positives = 220/469 (46%), Gaps = 59/469 (12%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 + ++ R+G FYEL+F+ A + L + L + G +PM G P + +++ L++ Sbjct: 113 NCVILTRVGGFYELYFEQAEELAPLLNLKLAVKKTSAGP-VPMAGFPFFQLDRFLKILVQ 171 Query: 101 -IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAV--- 156 + +AI E+ + E K RG L R V R++TPGTL +++ + P+++N+L+AV Sbjct: 172 DLNKYVAISEEFANAAEDKARGGL-LFDRRVARIITPGTLIDEKFMDPSENNFLLAVYID 230 Query: 157 -----ARIRTE-----------------WAIAWIDISTGIFKISTSNHDRLISDIMRIDP 194 A++ + ++W+D+STG F ++ L S I RI Sbjct: 231 VAALKAQVEQQEGDLSAQQHILSSASQHVGLSWLDLSTGDFFTQSTTTQMLPSAIARIGA 290 Query: 195 REIIFSEK--ELSHAEYKSLFETLGNVAV--AQPNVFFD----HSISESRIADYYNITTV 246 REI+ +K +L E + L + A P+ S+ E+++AD + Sbjct: 291 REILVDQKLQDLIGQELQLLVGHDHRLMTFFAYPSKILPISQWSSVLEAQVADQDS---- 346 Query: 247 DTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL 306 +F+ E A + + YI+ + P R + ++ ID + LEIL T Sbjct: 347 ---DAFTPEEVAAGYSLLEYIRVQLQGLNLKLQPPRRRHLNESMNIDRNSLRGLEILETA 403 Query: 307 -SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQ 365 G + SLL + + T +G RL +R+ SP T IN RLD ++ F++N L + + Sbjct: 404 RDGFGKGSLLHAVRRTSTKSGARLLRDRLTSPSTSLLVINERLDLVSVFLENSDLRDSVI 463 Query: 366 KILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLK 425 ++LK S D R + + +GRG+ D+ + I++ I K L + G +E L Sbjct: 464 QLLKRSYDAQRLVQKFTLGRGDADDLICLARAIQASREI-----KVVLSSQHNGRLEALP 518 Query: 426 KLPQS-LEKTLSSM---LSDDLPTFKRDGGFLRDGADASLDETRSLRDQ 470 + + +++LS+M L D PT L D A++DE L+ Q Sbjct: 519 HIQSNDAKRSLSAMTGQLCLDGPT------ALADRISAAIDEEGLLQKQ 561 >gi|156377857|ref|XP_001630862.1| predicted protein [Nematostella vectensis] gi|156217891|gb|EDO38799.1| predicted protein [Nematostella vectensis] Length = 886 Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 233/909 (25%), Positives = 417/909 (45%), Gaps = 148/909 (16%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ +Q++EIK+ N D+++F G ++ F DDA +A++ L I + + + Sbjct: 9 TPLEQQFMEIKARNSDAVLFIECGYKFKFFGDDAEIAAKELNIMC-----FMDHNFMVAS 63 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKS-LVRRNVVRLVTPGTLTE--- 141 +P H + ++++L+ G+++ + +Q+E+ NKS + R + L T TL Sbjct: 64 IPTHRLHIHVKRLVNKGYKVGVVKQMETAALKAASDNKSNVFTRELHALYTKSTLVGEDM 123 Query: 142 ------------DQLLSPTDSNYLMAV------ARIRTEWAIAWIDISTG-----IFKIS 178 D++ YLM V A+ + I + STG F S Sbjct: 124 EVLRGKEDAAGGDEVSLEAHGGYLMCVHEEDSGAKTGITYGIVAVQPSTGEIIYDYFPDS 183 Query: 179 TSNHDRLISDIMRIDPREII----FSEKELSHAE-YKSLFETLGNVAVAQ-PNVFFDHSI 232 S + L + + + P E++ SE+ S + + S +++ + + P+ Sbjct: 184 PSCSE-LETRLEHLSPSELLIHDTLSERTRSFLDVFSSYYKSADPIRTERIPDPLPSSQS 242 Query: 233 SESRIADYYNITTVDTFGSFS----------------QVEKTAAAAAISYIK--KTQMVN 274 ++I + +T +TFGS S V+K + Y+K K V Sbjct: 243 DANQILQEFCNSTDETFGSSSPNSQETLLQTLLTLPLPVQKCFISLQ-KYLKDFKLDKVL 301 Query: 275 KPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERI 334 K + + I + ++ A NLEIL++ GSR+ SLL +D++ T G RL I Sbjct: 302 KLAGNFEKFSTIAKFMKLNGCALQNLEILKSQCGSRKGSLLGILDHTSTPFGKRLLKRWI 361 Query: 335 ASPLTDSTKINTRLDSINFFI---QNPILINPIQKILKSSPDVPRSLSRLKIGRGE---- 387 PL + +I RL +++ + L+ I ++L PD+ + L + + Sbjct: 362 TQPLLEKREIEERLKAVSCLSALSSDQPLLKSIHRLLSHIPDLEKGLCAIYYKKCSTVEF 421 Query: 388 ---PKDIAVIRDGIRS----------GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 K ++ + D ++S G +IL+ ++P+ L G + L ++ + K Sbjct: 422 LSIAKALSKLHDELKSTELNSAKELAGSSILSRTF-TEVPDLLSGVEDFLNQIDEKAAKC 480 Query: 435 LSSMLSDDLPTFKRDGGFLR--------DGADASLDETRSLRDQSKRIIASLQLKYAEET 486 D F F DG A L E RS + +R I + Y Sbjct: 481 -----GDKTKLFTDPSKFPPVLTCIQEIDGLTAELKEHRS---EIRRTIQHPSVDYC--- 529 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTT-------LE 539 + N + IEV ++ + D +I + RF T Sbjct: 530 -----TVSGNE---FLIEVRNAKLPSVPAD------WIKISATKQICRFRTPFVEEKFKS 575 Query: 540 LIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQ 599 + ++ A A L E +I S + A +++A +D ++LA +A++ Sbjct: 576 ICQWREKLAQACQEAWL---EFLDIFSTSYTR----FHRAVKLVANLDCIMSLATVARQP 628 Query: 600 NYCRPIIDNST---NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLT 656 Y P+I T + ++ GRHP+++ L++ + ++ N+ +L + + ++T Sbjct: 629 GYVCPVIKKETEASSVLITQGRHPVIDVLLQEHAQ--YVPNNTEL----NTEGPRCMIIT 682 Query: 657 GPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVE 716 GPNMGGKS++++Q ALIV+MAQMGS+VPA + +D +++R+G++DN+ GRSTFMVE Sbjct: 683 GPNMGGKSSYIKQVALIVLMAQMGSFVPAHSVELTPLDAIYTRMGASDNIYKGRSTFMVE 742 Query: 717 MIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELT 776 + ET+ IL QAT +S VILDE+GRGT+T DG++IA+AT+ + + L TH+ L Sbjct: 743 LQETSEILAQATRRSLVILDELGRGTSTHDGVAIAYATLRHFIDQTHSLTLFVTHYPSLA 802 Query: 777 DLSK----SLKRFHNATL---------QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAG 823 +L + + H A + V+ + FL++++ G+A SYG+ V +LAG Sbjct: 803 ELERIFPGHVTNNHMAFMTSDGDTELASVAMDTPAVTFLYELVRGVAARSYGLNVARLAG 862 Query: 824 LPNTVISRA 832 +P +++ A Sbjct: 863 IPINIVAMA 871 >gi|154297650|ref|XP_001549251.1| MutS2 protein [Botryotinia fuckeliana B05.10] gi|150858493|gb|EDN33685.1| MutS2 protein [Botryotinia fuckeliana B05.10] Length = 1082 Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 127/263 (48%), Positives = 178/263 (67%), Gaps = 11/263 (4%) Query: 580 SQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDC 639 + V+ IDI+ +LA LA E+ + RP ++ S+ + GRHP VE LK++ + FI+NDC Sbjct: 820 AAVLDEIDIACSLATLANERGWTRPTLNASSAHKIIGGRHPTVETGLKEEG-RSFISNDC 878 Query: 640 DLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSR 699 + + K WL+TGPNM GKSTFLRQNALI ++AQ+GSYVPA YA +GIVD +FSR Sbjct: 879 LVG-----DVHKAWLITGPNMAGKSTFLRQNALITVLAQVGSYVPAEYAELGIVDHIFSR 933 Query: 700 VGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLH 759 VGSADNL +STFMVEM+E+A+IL AT++SFVI+DEIGRGT DG+++A+A + +L+ Sbjct: 934 VGSADNLYRDQSTFMVEMLESATILKNATSRSFVIMDEIGRGTTPTDGVAVAFACLHHLY 993 Query: 760 ETNRCRGLLATHFHELTDL----SKSLKRFHNATLQVSDSNEGII-FLHKVIPGIADHSY 814 N+CR L ATHFH L DL + F+ ++ + +G +++K+ GI S+ Sbjct: 994 HVNKCRALFATHFHALVDLIEENNMDAVGFYCTDVEEDGNTDGAFRYMYKLKEGINRQSH 1053 Query: 815 GIQVGKLAGLPNTVISRAYDILK 837 ++V KLAGLP I A IL+ Sbjct: 1054 ALKVAKLAGLPREAIKVARQILE 1076 Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 105/383 (27%), Positives = 180/383 (46%), Gaps = 52/383 (13%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 + +V R+G FYEL+F+ A LG+ + + + G + M G P H + Y++ L++ Sbjct: 223 NCVVITRVGGFYELYFEHADEFGPLLGLKTSHKKTNAGP-VSMAGFPFHQLDRYLKILVQ 281 Query: 101 -IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAV--- 156 + +AI E+ + + K + + R V R+VTPGTL ++ + P +NY++A+ Sbjct: 282 DLNRYVAISEEFPNDVSDKVKSGGLMHDRRVSRVVTPGTLIDEGFMDPLSNNYVLAIHIE 341 Query: 157 ----------ARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSH 206 R +AW+D+STG F S+ +L S + RI PREI+ E E+ Sbjct: 342 HGDTVDDIEYEEHRKSIGLAWLDLSTGHFFTQKSSLSQLPSFLARIAPREIVLDE-EIQS 400 Query: 207 AEYKSLFETL-------------GNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS 253 + +F L G +++ + ++S S ++DTF + Sbjct: 401 LKSHEIFTILTDEHRMITYATLSGVKPISEWTPMLESAVSPS---------SIDTF---T 448 Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-----SG 308 + E +A + + Y++ + P R+ + + ID LEI RT+ SG Sbjct: 449 EEEISAGSCLLHYVETRLQSTNMRLQPPVRQ--LNVMGIDKNTMRALEIKRTIKEDVFSG 506 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKIL 368 S LL TI ++T G RL +ASP T IN+RLD + + +++ L + + +L Sbjct: 507 S----LLHTIRRTVTKGGARLLENWLASPSTSLDVINSRLDLVTYMLESENLRDRVITLL 562 Query: 369 KSSPDVPRSLSRLKIGRGEPKDI 391 K S D R L + GRG+ D+ Sbjct: 563 KRSHDSHRLLQKFAFGRGDGDDL 585 >gi|115491107|ref|XP_001210181.1| hypothetical protein ATEG_00095 [Aspergillus terreus NIH2624] gi|114197041|gb|EAU38741.1| hypothetical protein ATEG_00095 [Aspergillus terreus NIH2624] Length = 934 Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 125/272 (45%), Positives = 179/272 (65%), Gaps = 7/272 (2%) Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 FE L +I + + V+ +D++ + A LA+EQ RPI+ NST + GRHP Sbjct: 645 FESLRREVILNLVKIRRNASVMDELDVACSFATLAQEQQLVRPILTNSTKHKIVGGRHPT 704 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 V+ L++Q + F++N+C L P ++WL+TGPNM GKSTFLRQNALI I+AQ+GS Sbjct: 705 VKLGLEEQGRR-FVSNNCFLGDPE-----RIWLITGPNMAGKSTFLRQNALITILAQVGS 758 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA YA IGIVD++FSR+G+AD+L +STFMVEM+ETA+IL QAT +SFVI+DE+GRG Sbjct: 759 FVPAEYAEIGIVDQIFSRIGAADDLFRDQSTFMVEMLETAAILKQATPRSFVIMDEVGRG 818 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG-II 800 T DG ++++A + +LH NR R L ATHFH L +L+ + V ++ G Sbjct: 819 TTPEDGTAVSFACLHHLHYRNRSRTLFATHFHSLAELTHDFEALGRYCTDVRETASGSFS 878 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 F+H++ G+ S+ ++V +LAGLP I A Sbjct: 879 FVHRLRKGVNRESHALKVAQLAGLPKETIEMA 910 Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 107/391 (27%), Positives = 185/391 (47%), Gaps = 31/391 (7%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 + ++ R+G FYEL+F A + L I L + G +PM G P + +++ L++ Sbjct: 37 NCVILTRVGGFYELYFQQAEEYAPLLNIKLASKKTSAGP-VPMAGFPFFQLDRFLKILVQ 95 Query: 101 -IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAV--- 156 + +AI E+ E K R L R V R++TPGTL +++ + P+++N+L+A+ Sbjct: 96 DLNKYVAISEEFALGEEDKARSGGLLFDRRVARIITPGTLIDEKFMDPSENNFLLAIYMD 155 Query: 157 -----ARIRTEW-------------AIAWIDISTGIFKISTSNHDRLISDIMRIDPREII 198 A+++ + ++W+D+STG F + L S I RI REI+ Sbjct: 156 IPSLKAQLKHQQDGIHVLSSASQHVGLSWLDLSTGDFFTQFTTAQMLPSAIARIGAREIL 215 Query: 199 FSEKELSHAEYKSLFETLGNVAVAQPNVFFDH--SISESRIADYYNITTV--DTFGSFSQ 254 +++L + L +G+ +P FF + I DY V + SF+ Sbjct: 216 V-DQDLQDLIGQELQLLVGHDH--RPVTFFPYPRKIRPMHQWDYMLEAPVPSEAIESFTT 272 Query: 255 VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQS 313 E A + + Y++ + P R + ++ ID + LEIL T G + S Sbjct: 273 EETAAGYSLLEYVRVQLQGVDLKLQPPRRRHLNESMNIDRNSLRGLEILETARDGFGKGS 332 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 LL + + T +G RL +R+ SP T IN RLD ++ FI + L + + ++LK S D Sbjct: 333 LLHAVRRTSTKSGARLLRDRLTSPSTSLQVINERLDLVSVFISHKKLRDNVTQLLKRSYD 392 Query: 374 VPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 R + + +GRG+P D+ + I + I Sbjct: 393 AQRLVQKFTLGRGDPDDLICLSRAIEASKEI 423 >gi|145539700|ref|XP_001455540.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124423348|emb|CAK88143.1| unnamed protein product [Paramecium tetraurelia] Length = 1106 Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 234/898 (26%), Positives = 403/898 (44%), Gaps = 115/898 (12%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 T M+QY + KS N D ++F+++G FYELF++DA + ++ L + R H G Sbjct: 229 TKCMQQYWKYKSENFDKIIFFKLGKFYELFYEDAYIGNKYLDLNWMGRKMH-------TG 281 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR---------GN-KSLVRRNVVRLVT 135 P + Y L++ G+++ I +Q E+P + +R GN +V+R + ++T Sbjct: 282 FPEKAVHKYKALLLEYGYKVVIVDQTETPEQMNQRVTQNKKTGQGNTDKIVQRQISEILT 341 Query: 136 PGTLTEDQLLSPT--DSNYLMAVAR-----IRTEWAIAWID-----ISTGIFKISTSNHD 183 GT ++ S D L+ + + E+ IA ++ IS + N++ Sbjct: 342 KGTYLYEEGESQMNLDEKVLLVIRKKIISNAIEEYGIAILERQTNTISLAFIENRDKNYE 401 Query: 184 RLISDIMRIDPREIIFSEKEL-SHAEYKSLF------ETLGNVAVAQPNVFFDHSISESR 236 L + ++ + P E + + L SH + + ++ +Q N +D + R Sbjct: 402 SLKTLLLHMRPVETVIDQHNLPSHDPITKMIGGSVIQSVISHLTASQDN--WDEKKALFR 459 Query: 237 IADYYN--ITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIG------YPEREDIQS 288 + YY F +QV A +Y+ +++K +G Y E +Q Sbjct: 460 LEQYYQNEFPPAIKFYKNNQVVLQALNGLFTYLNYILILDK-VLGCARFKIYNEVFSLQQ 518 Query: 289 TLFIDSAARSNLEILRTLSG--SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINT 346 + +DS A +LEIL+T + ++ SL ++ ++T G RL + +PL +I Sbjct: 519 CMILDSQAIYHLEILQTTNSVDKKDYSLFGVLNKTVTPGGHRLLRRWVCAPLYQVDQIRE 578 Query: 347 R----LDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGI 402 R D NF + + I K PD R SR+ + + AV + + Sbjct: 579 RQAMVCDISNFRKERDLFRQSI----KQFPDFERRCSRIYEYSIKSESKAVFYENLSE-- 632 Query: 403 NILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLD 462 L F L L+ A E++ Q L+ S + TF+ +GG L + L+ Sbjct: 633 QRLKEF--KSLTSTLKLAQEEITLFGQ-LQINFKSERLRKMMTFEANGGLLPN-VQEQLN 688 Query: 463 ETRSL----RDQSKRI--------------IASLQL------KYAEETKIKNLKIKHNNN 498 E +++ K I IA +QL Y ++ IK + K+N N Sbjct: 689 EFEQYIIWEKEKDKEIPKPVPGVLDTYDQSIAGVQLVQQKLDNYLQQ--IKKILFKNNGN 746 Query: 499 LGYFIEVTSSSASVLKKDLESKDR---FIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 + F+ + +L K + F + R+ T E+ D+ + A Sbjct: 747 IQ-FVHTKFRYEIEIPDELVEKSKPEDFEFTSSRQGYKRYITKEIKDMVTELEQAEE--- 802 Query: 556 LIELESFEILSNAIIEQSES----LDNASQVIAIIDISIALAILA--KEQNYCRPIIDNS 609 ++ + N I + +S D +++ +D +L++ E P + Sbjct: 803 -LKKQQLNAFGNFIFKHFQSNQSVWDTLIKILNELDALCSLSVFGDTSEGKMTMPTFNTE 861 Query: 610 -TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 T ++K+G+HP + S+ F++N D+ + K LLTGPNMGGKST LR Sbjct: 862 KTKLVIKEGKHPCL-------SNINFVSNSIDMG----EKLCKFQLLTGPNMGGKSTTLR 910 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 ++ I+AQ+G VP + +D++F+R+G+ D L G+STF VE+ ET L T Sbjct: 911 MVCVLAILAQLGCSVPCEEMELSPIDRIFTRIGAKDYLMEGKSTFYVELEETLIPLKYGT 970 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA 788 S I DE+GRGT+T DG++IA A + YL +T +CR L ATHF L + +K + N Sbjct: 971 KNSLFITDELGRGTSTYDGVAIASAVMHYLIKTIQCRVLFATHFRILVEEAKLISEVTNV 1030 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHN 846 + + +IFL+++ G + S+GI V K+ G+ N++I+RA D+ FE N Sbjct: 1031 HMACYIQDGKVIFLYRLKEGACEASFGINVAKVVGIENSIITRAEDMANFFENKVQKN 1088 >gi|124506031|ref|XP_001351613.1| DNA repair protein, putative [Plasmodium falciparum 3D7] gi|23504540|emb|CAD51420.1| DNA repair protein, putative [Plasmodium falciparum 3D7] Length = 1350 Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 182/599 (30%), Positives = 298/599 (49%), Gaps = 62/599 (10%) Query: 287 QSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINT 346 ++ + +D+ A +LEIL T SG + SL ++ + T G R I SPL D KI Sbjct: 733 ETYMVLDATALKHLEILETQSGDTKNSLYDYVNKTCTNFGARNLRRWICSPLLDCEKIRE 792 Query: 347 RLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI-----RSG 401 RLD ++F N +++ I+ LK PD+ R L+++ I + + AV D + + Sbjct: 793 RLDVVDFLKNNEQILSLIRMKLKKLPDIERLLNKICIQASQSERGAVFFDNVVNTKLKEF 852 Query: 402 INILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS--MLSDDLPTFKRDGGFLR----- 454 + LN F + D +E+ +LP L + ++ + D++ + G + Sbjct: 853 VTFLNAFKEIDTMLIDVNRIERDGELPSRLFQICNTPDICKDNIKGSYPNIGLITNEFLE 912 Query: 455 -------------DGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGY 501 +G D +D+ + + ++ + KI LK H Y Sbjct: 913 KIYFDGDKEYKPAEGCDEDIDKINEKEKNVENKLNNVLEHMRTQLKIPTLKFVHAK-FKY 971 Query: 502 FIEVTSSSASVLKKDLE---SKDRF--IHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 +E + K++E +K + IH + +L +L D+E +A Sbjct: 972 EVECPDNIPKSFLKNVEITSAKKGYVRIHNDEIKSLVE----KLEDIEQEKKDAI----- 1022 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDI--SIALAILAKEQNYCRPII-------- 606 F+ L + E +A +++A +D S A +L RPI+ Sbjct: 1023 --YPFFQKLFHLFYAHYEKYVSACRLVAELDCLQSFAYVVLNTAFPLTRPILHPMDSKQG 1080 Query: 607 DNSTNF-IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKST 665 + T F I++D HP+V + FI+N+ + C DK LLTGPNMGGKST Sbjct: 1081 EEKTPFLILEDNIHPVVAMLMPN-----FISNNIYMGC--DKEKQSTLLLTGPNMGGKST 1133 Query: 666 FLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILN 725 LRQ A+ VI+AQ+G++VP +Y + +VDK+F+R+GS+DNL G+STF+VE+ + +++L Sbjct: 1134 LLRQTAISVILAQIGAFVPCTYCELTVVDKIFTRLGSSDNLFEGKSTFLVELEDISNLLK 1193 Query: 726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRF 785 Q+T S ILDE+GRGT++ DG +IA +T+E + + +CR + +TH+H L + K K Sbjct: 1194 QSTKYSLAILDELGRGTSSFDGTAIALSTLEQISDVIKCRCIFSTHYHLLVEEVKHNKNI 1253 Query: 786 HN--ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 N +L + D E IIFL+K I G+ S+GI + KLAGLP +I A++ FE + Sbjct: 1254 SNYHMSLSIDDEQEKIIFLYKFIKGVCPKSFGIHIAKLAGLPKEIIDLAHEKSLLFENV 1312 Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 79/136 (58%), Gaps = 12/136 (8%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP M+Q+ +IKS N D ++F++MG FYE+F+ DA CL T+ G+ P G Sbjct: 406 TPGMQQFWKIKSRNFDKIIFFKMGRFYEIFYIDA-----CLMHTICSLNWMSGEHKPHLG 460 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSL------VRRNVVRLVTPGTL 139 P + + Y +K+I GH++ + EQ+E+P E ++R +S+ ++R + + T GT+ Sbjct: 461 FPEQSLHFYAKKVINSGHKVVVIEQMETPKELEQRNKESIGPKDKAIKREINEIYTKGTI 520 Query: 140 TEDQLLSPTDSNYLMA 155 D +LS ++ YL+ Sbjct: 521 LHDNMLS-AETKYLVC 535 >gi|50306061|ref|XP_452992.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49642125|emb|CAH01843.1| KLLA0C17732p [Kluyveromyces lactis] Length = 1194 Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 229/877 (26%), Positives = 410/877 (46%), Gaps = 104/877 (11%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP +QY EIKS D ++F++ G F+EL+ DA L + + G+ ++ + G Sbjct: 273 TPFEKQYWEIKSKMWDCILFFKKGKFFELYEKDAHLGHHLFDLKIAGGGR---ANMQLAG 329 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR-GNKSLVRRNVVRLVTPGTLTEDQL 144 VP + +++ + I+ G+++A +Q ES L + R G+K +V R + ++T GTLT+ ++ Sbjct: 330 VPEMSFDYWASQFIQYGYKVAKVDQKESMLAKEMREGSKGIVERELQCVLTSGTLTDSEM 389 Query: 145 LSPTDSNYLMAV---------------ARIRTEWAIAWIDISTGIFKISTSNHDRLISDI 189 L + Y +AV + + A ID +TG + D S + Sbjct: 390 LKSDLATYCVAVREEPITYYDEEILALPKTGKYFGFAAIDTATGHIDLLEFEDDEECSQL 449 Query: 190 MRI----DPREIIFSEKELSH-----AEYKSLFETLGNVAVAQPNVFFDHSISESRIADY 240 I P E+I + + ++ + E + N ++ F+ + E +Y Sbjct: 450 DTIMSQFKPTEVIMEKSNVCSLAQKIIKFNAQPEAIINQRTSKEFYDFEKTFDELITHEY 509 Query: 241 YN----ITTV--DTFGSFSQVEKTAAAAAISYIKKTQM-VNKPTIGYPEREDI---QSTL 290 + TV + + +V A +SY++ ++ + T+G E + Q+ L Sbjct: 510 FKSMDRWPTVLKSYYETGKKVGFHAFGGLLSYLQWLKLDTSLVTMGQVEEYNPVRSQTCL 569 Query: 291 FIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLD 349 +D NLEI T G+ SL K I+ +IT G R + + PL IN+RLD Sbjct: 570 ALDGITLQNLEIFANTYDGTDRGSLFKLINRAITPMGKRKLRKWVMHPLLKIEDINSRLD 629 Query: 350 SINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFL 409 S++ + + L + ++ L PD+ R LSR+ + + + G +IL L Sbjct: 630 SVDLLLSDMNLRDLLENELLKLPDLERMLSRVHSCSLKIQYFNKVLCGFE---DILALVE 686 Query: 410 KNDLPEELRGAVEK-LKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGA----------- 457 K + +L+G+++ L ++P SL L + + F R+ ++DG Sbjct: 687 KLSIFADLKGSLKSYLTEIPSSLTTVLEAWSN----AFDRNLA-VKDGVIVPNRGVEPEF 741 Query: 458 DASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDL 517 D S+D + + DQ + + +Y + K N++ K + Y IEV ++ + + Sbjct: 742 DESMDRIQGIEDQLQECLT----QYKKLLKSSNIQFKDSGKEIYTIEVPMAATRNVPHE- 796 Query: 518 ESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLD 577 + + R+ + ++ L ++ A ++E + L N + ++ + Sbjct: 797 -----WTQMAANKSFKRYYSADVQRLARQMAEAREMHKVLE----DDLKNRLYKKFTNHY 847 Query: 578 NAS-----QVIAIIDISIALAILAKEQNY--CRPII---------DNSTNFI-VKDGRHP 620 NA Q I+ ID I+LA ++ + CRP + + +I K+ RHP Sbjct: 848 NAVWLPTIQAISNIDCIISLARTSESLGFPACRPKLVEGLHPETNEKLNGYIRFKELRHP 907 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 + S+K FI ND L K++ +L LLTG N GKST LR + VI+AQ+G Sbjct: 908 CF--NMGSSSAKEFIPNDVVLG----KDAPQLGLLTGANAAGKSTVLRMTCVAVILAQLG 961 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 Y+P A VD++ +R+G++DN+ G+STF VE+ ET IL+ TN+S +++DE+GR Sbjct: 962 CYIPCEEAEFTPVDRIMTRLGASDNIMQGKSTFFVELSETKKILDLVTNRSLLVVDELGR 1021 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA-----TLQVSDS 795 G ++ DG +IA A + ++ + G ATH+ L S N + V + Sbjct: 1022 GGSSSDGFAIAEAVLHHVATHIQSLGFFATHY---AALGSSFTNHPNVQPLKMAILVDEE 1078 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 + + FL+K++ G +D S+G+ V + G+P +V+ A Sbjct: 1079 SRNVTFLYKLVDGKSDGSFGMHVASMCGIPRSVVDNA 1115 >gi|221116539|ref|XP_002164261.1| PREDICTED: similar to mutS homolog 3 [Hydra magnipapillata] Length = 916 Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 230/858 (26%), Positives = 409/858 (47%), Gaps = 91/858 (10%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S TP+ Q++EIKS + D L+F G Y F DA +A+ L I K + + Sbjct: 78 SYTPLELQFMEIKSKHEDLLLFVECGYKYRFFGKDAEIAAEELNIY-----KSMDHNFMT 132 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLVTPGT---L 139 +PVH + ++ +L++ GH++ + Q E S L+A ++ R ++ + T T L Sbjct: 133 ASIPVHRLHIHMSRLLENGHKVGVVAQTETSALKAAGNNKSAVFSRKLMYIYTKATYLNL 192 Query: 140 TEDQLLSPTDS-NYLMAVARIRTEWAIAWIDISTG--IFKISTS-NHDRLISDIMRIDPR 195 E +++ ++ +++ +++ + + ++ ST ++ ++ N LI + + P Sbjct: 193 EEGNVVTKKNTGDFICSISECEGCFNVLLVNPSTSDIVYDMNLDINGLNLIFHVFK--PC 250 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQ- 254 EI+ +L+ E +L + AQ V RI + + D+F F + Sbjct: 251 EIVTGISDLN-MEAGNLIKNYK----AQKTVL--------RI-EKFCCEMSDSFNQFFER 296 Query: 255 -----VEKTAAAAAISYIKKTQMVN--KPTIGYPEREDIQSTLFIDSAARSNLEIL-RTL 306 K A SY+ + + N + GY S + +D NLE+ Sbjct: 297 IKIDISLKQCACLMYSYLAQFHLENLLNYSSGYRSFHSNTSFMKLDYTCIQNLELFSNNW 356 Query: 307 SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSIN---FFIQNPILINP 363 + SL ++++ + G RL + PL D +IN RLD+++ +Q ++ Sbjct: 357 NNQVSGSLFSILNHTYSAFGKRLLINWLREPLRDVYEINKRLDAVDELKLCLQLKSIVG- 415 Query: 364 IQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFL--KNDLPEELRGAV 421 I K+L+ S D+ LS + R P I + NI + F+ + + ++ Sbjct: 416 ICKVLQKSVDLENGLSLIYNLRCAPIQFLNICESFE---NIRSFFISHREEFMSNFNSSI 472 Query: 422 --EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASL-DETRSLRD-----QSKR 473 + K+P L + + K + +R+GA A + +T + Q + Sbjct: 473 ILDICSKVPDLLGNNILDFMK------KLNKNEIRNGAKACMFADTINFPHLHKCLQEIK 526 Query: 474 IIASLQLKYA--EETKI--KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTM 529 +I L K+ + T + + L+ K + + Y IEV + +L ++ + Sbjct: 527 VIEGLLAKHLLLDVTPVLGRKLEFKTVSGIEYLIEVRNVDVKILPENW---------IKV 577 Query: 530 SNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAII--- 586 S FT + +E+ + L + E N +I+ +N V+ ++ Sbjct: 578 SATKHFTRVRTPFIESHFHKLLRLRETLLLAADEAWQNLLIQFKGIYNNCRNVVVLLSTL 637 Query: 587 DISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPND 646 D I+LA +A Y RP + ++KDGRHP++E + Q +++ND +C N+ Sbjct: 638 DCLISLATVANGVGYVRPKFTENV-IMIKDGRHPVIETLINNQ----YVSND---TCLNE 689 Query: 647 KNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNL 706 + K+ L+ GPNMGGKS++++Q A+ IMAQMG YVPAS A + I+D ++ R+G++D + Sbjct: 690 --TEKVMLIFGPNMGGKSSYVKQVAICCIMAQMGCYVPASSACLPILDSIYCRMGASDKI 747 Query: 707 ASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRG 766 A G+STFMVE+ E + I+ AT S VILDE+GRGT+T DG +IA+AT+E+ E +C Sbjct: 748 AGGKSTFMVELEEASYIMKNATCNSLVILDELGRGTSTHDGTAIAYATLEHFIEKIQCFL 807 Query: 767 LLATHFHELTDL----SKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLA 822 L TH+ L +L +KSL +H + I+ L+K+ G + SYGI V ++A Sbjct: 808 LFITHYPTLCELKCKYTKSLSLYHMTFMSNDVDVNAIVLLYKLTKGKENRSYGINVARMA 867 Query: 823 GLPNTVISRAYDILKTFE 840 G+ T++++A + K E Sbjct: 868 GIDETILNKAAYMSKELE 885 >gi|30686920|ref|NP_194284.2| MSH3 (Arabidopsis homolog of DNA mismatch repair protein MSH3); damaged DNA binding / mismatched DNA binding / protein binding [Arabidopsis thaliana] gi|12644077|sp|O65607|MSH3_ARATH RecName: Full=DNA mismatch repair protein Msh3; Short=AtMsh3 gi|3319876|emb|CAA07684.1| Msh3 protein [Arabidopsis thaliana] gi|332659675|gb|AEE85075.1| DNA mismatch repair protein Msh3 [Arabidopsis thaliana] Length = 1081 Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 246/997 (24%), Positives = 456/997 (45%), Gaps = 152/997 (15%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ +Q +E+KS PD ++ +G Y F +DA +A+R LGI H+ + Sbjct: 105 TPLEQQVVELKSKYPDVVLMVEVGYRYRFFGEDAEIAARVLGIY-----AHMDHNFMTAS 159 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKS-LVRRNVVRLVTPGTLTEDQL 144 VP N ++++L+ G++I + +Q E+ N++ R + L T TL + Sbjct: 160 VPTFRLNFHVRRLVNAGYKIGVVKQTETAAIKSHGANRTGPFFRGLSALYTKATLEAAED 219 Query: 145 LSP---------TDSNYLMAVA--RIRTEW-------------AIAWIDISTG--IFKIS 178 +S + SN+L+ V R+++E + ++ISTG +++ Sbjct: 220 ISGGCGGEEGFGSQSNFLVCVVDERVKSETLGCGIEMSFDVRVGVVGVEISTGEVVYEEF 279 Query: 179 TSNHDR--LISDIMRIDPREIIFSEKELSHAEYKSLFETLG---NVAVAQPNV-FFDHSI 232 N R L + I+ + P E++ + LS K L G NV V + ++ F + Sbjct: 280 NDNFMRSGLEAVILSLSPAELLLGQP-LSQQTEKFLVAHAGPTSNVRVERASLDCFSNGN 338 Query: 233 SESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKP---------TIGYPER 283 + + + +++ AA +S + ++N P T + ++ Sbjct: 339 AVDEVISLCEKISAGNLEDDKEMKLEAAEKGMSCLTVHTIMNMPHLTVQALALTFCHLKQ 398 Query: 284 EDIQSTLFIDSAARS---------------NLEILRTLS-GSREQSLLKTIDYSITGAGG 327 + L+ ++ RS LE+++ S GS SL +++++T G Sbjct: 399 FGFERILYQGASFRSLSSNTEMTLSANTLQQLEVVKNNSDGSESGSLFHNMNHTLTVYGS 458 Query: 328 RLFAERIASPLTDSTKINTRLDSINFF------------------------IQNP---IL 360 RL + PL D I+ RLD+++ I +P ++ Sbjct: 459 RLLRHWVTHPLCDRNLISARLDAVSEISACMGSHSSSQLSSELVEEGSERAIVSPEFYLV 518 Query: 361 INPIQKILKSSPDVPRSLSRLKIGRGEPKD-IAVIRDGIRSGINILNLFLKNDLPEELRG 419 ++ + + S D+ R ++R+ + + IAV+ + +G I L +K D E+R Sbjct: 519 LSSVLTAMSRSSDIQRGITRIFHRTAKATEFIAVMEAILLAGKQIQRLGIKQD--SEMRS 576 Query: 420 AVEKLKK--LPQSLEKTLSSMLSDD-----LPTFKRDGGFLRDGAD---------ASLDE 463 + L + L +SS + D L ++ D D L E Sbjct: 577 MQSATVRSTLLRKLISVISSPVVVDNAGKLLSALNKEAAVRGDLLDILITSSDQFPELAE 636 Query: 464 TRS----LRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLES 519 R +R++ IAS + K A I+NL+ + + + IE L D + Sbjct: 637 ARQAVLVIREKLDSSIASFRKKLA----IRNLEFLQVSGITHLIE--------LPVDSKV 684 Query: 520 KDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNA 579 ++ + R+ E++ + + AT ++ S++ + A Sbjct: 685 PMNWVKVNSTKKTIRYHPPEIVAGLDELALATEHLAIVNRASWDSFLKSFSRYYTDFKAA 744 Query: 580 SQVIAIIDISIALAILAKEQNYCRP-IIDNS--TNFIVKDGRHPIVEKTLKQQSSKPFIA 636 Q +A +D +L+ L++ +NY RP +D+ ++ GRHP++E L+ F+ Sbjct: 745 VQALAALDCLHSLSTLSRNKNYVRPEFVDDCEPVEINIQSGRHPVLETILQDN----FVP 800 Query: 637 NDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKL 696 ND L + ++TGPNMGGKS ++RQ ALI IMAQ+GS+VPAS+A + ++D + Sbjct: 801 NDTILHAEGEY----CQIITGPNMGGKSCYIRQVALISIMAQVGSFVPASFAKLHVLDGV 856 Query: 697 FSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIE 756 F+R+G++D++ GRSTF+ E+ E + I+ +++S VILDE+GRGT+T DG++IA+AT++ Sbjct: 857 FTRMGASDSIQHGRSTFLEELSEASHIIRTCSSRSLVILDELGRGTSTHDGVAIAYATLQ 916 Query: 757 YLHETNRCRGLLATHFHELTDLSK----SLKRFHNATLQV-----SDSNEGIIFLHKVIP 807 +L RC L TH+ E+ ++S S+ +H + L + S ++ + +L+K++ Sbjct: 917 HLLAEKRCLVLFVTHYPEIAEISNGFPGSVGTYHVSYLTLQKDKGSYDHDDVTYLYKLVR 976 Query: 808 GIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI--QTKESKNN 865 G+ S+G +V +LA +P + I RA + E +++ R+ PE + + ++ + Sbjct: 977 GLCSRSFGFKVAQLAQIPPSCIRRAISMAAKLEAEVRARERNTRMGEPEGHEEPRGAEES 1036 Query: 866 LSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTL 902 +S LF + +K L E P A + L AW + Sbjct: 1037 ISALGDLFAD-LK-FALSEEDPWKAFEFLK--HAWKI 1069 >gi|195115750|ref|XP_002002419.1| GI12901 [Drosophila mojavensis] gi|193912994|gb|EDW11861.1| GI12901 [Drosophila mojavensis] Length = 919 Score = 251 bits (640), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 181/619 (29%), Positives = 313/619 (50%), Gaps = 44/619 (7%) Query: 254 QVEKTAAAAAISYIKKTQMVNKP-TIGYPERE--DIQSTLFIDSAARSNLEILR------ 304 Q+ A AI+Y+ +VN +G+ E + D++ + +DSAA + L I+ Sbjct: 263 QLAAEALRVAINYL---DLVNDAGNLGHYELKQLDLKRFVHLDSAAVAALNIIPKPGTHP 319 Query: 305 TLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPI 364 ++ R QS+L +D+ T G RL A+ + PL + +N R D + +++P ++ + Sbjct: 320 SMPSYRWQSILGVLDHCRTPQGHRLMAQWVKQPLRSAEILNDRHDIVQCLLESPETLDTL 379 Query: 365 Q-KILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFL-------KNDLPEE 416 LK PD+ +L + +D+ I I IL L L ++ L Sbjct: 380 SLDYLKRIPDILMLTKKLMRRKANLQDLFRIYQVILRTPKILQLLLSLGHSTVQSVLCAP 439 Query: 417 LRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIA 476 +G +E L L Q +E+ + D ++ ++ D L + + + + Sbjct: 440 FKGFLEDLTGLKQMVEQVV------DFEAIEKGEYLVKSTFDGRLMDLQQTMTELYNKME 493 Query: 477 SLQLKYAEETKI--KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTR 534 ++ K +EE + K +K+++ LGY + T SVL+K+ F + R Sbjct: 494 RIRDKCSEELDLDGKLIKLENVAKLGYHLRTTIKDDSVLRKN----KNFRIVDVIKGGVR 549 Query: 535 FTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAI 594 FT+ +L + T+ + E + + + L + + +A +D ++ AI Sbjct: 550 FTSDKLEGYADEFTSLRARYEEQQQSIVEEIIQVAVGYAAPLTSLNNELAQLDCLVSFAI 609 Query: 595 LAKEQN--YCRP--IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSG 650 A+ Y RP + + + +++D RHP +E L++ S FIAN + +K+ Sbjct: 610 AARSAPTPYVRPKMLPEGAGQLLLEDVRHPCLE--LQEHVS--FIANSVEF----EKDKC 661 Query: 651 KLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGR 710 ++++TGPNMGGKST++R V+MA +G++VP S A I +VD + RVG++DN+ G Sbjct: 662 NMFIITGPNMGGKSTYIRSVGTAVLMAHVGAFVPCSLAKISMVDSILGRVGASDNIIKGL 721 Query: 711 STFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLAT 770 STFMVEMIET+ I+ AT++S VI+DE+GRGT+T +G IAW+ E+L + +C L AT Sbjct: 722 STFMVEMIETSGIIRTATDKSLVIIDELGRGTSTYEGCGIAWSIAEHLAKETKCFTLFAT 781 Query: 771 HFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVIS 830 HFHE+T L+++L N + + L++V PG+ + S+GIQV +LA P V+ Sbjct: 782 HFHEITKLAETLSTVKNCHMAAVADEDNFTLLYQVRPGVMEKSFGIQVARLANFPEQVVH 841 Query: 831 RAYDILKTFEKLYHHNQKD 849 A ++ FE + Q + Sbjct: 842 NAQEVYNEFEDEHAGKQNE 860 >gi|164424274|ref|XP_958182.2| hypothetical protein NCU07407 [Neurospora crassa OR74A] gi|157070446|gb|EAA28946.2| hypothetical protein NCU07407 [Neurospora crassa OR74A] Length = 1184 Score = 251 bits (640), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 132/280 (47%), Positives = 175/280 (62%), Gaps = 29/280 (10%) Query: 582 VIAIIDISIALAILAKEQNYCRPIIDNS----------TNFIVKDGRHPIVEKTLKQQSS 631 V+ +DI+ +LA LA EQN RPI+ +S T ++ GRHP VE +L + Sbjct: 902 VLDELDIATSLARLATEQNLVRPILHDSSTTNGSQGMGTRTVIVGGRHPTVEPSLLSRGM 961 Query: 632 KPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIG 691 F NDC + P G +WL+TGPNM GKSTFLRQNALI I+AQMG YVPA YA +G Sbjct: 962 T-FQKNDCLIGSPG---QGAIWLITGPNMAGKSTFLRQNALITILAQMGCYVPADYAELG 1017 Query: 692 IVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIA 751 IVD +FSRVGSADNL + +STFMVEM+ETA+IL QAT +SFVI+DEIGRGT DG ++A Sbjct: 1018 IVDAIFSRVGSADNLYADQSTFMVEMMETAAILRQATPRSFVIMDEIGRGTTPEDGTAVA 1077 Query: 752 WATIEYLHETNRCRGLLATHFHELTDLSK-----------SLKRFHNATLQVSDSNE--- 797 +A++ +L N+CRGL ATHFH + D+ K S + +D E Sbjct: 1078 FASLHHLLTVNKCRGLFATHFHAVGDMLKEQGLVVEDGASSAGASWGVAMYCTDVEEDES 1137 Query: 798 -GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 G +++HK+ G+ S+ ++V +LAGLP I A +L Sbjct: 1138 GGFVYVHKLRKGMNRQSHALKVARLAGLPEPAIKIAQQVL 1177 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 98/379 (25%), Positives = 167/379 (44%), Gaps = 48/379 (12%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 + ++ R+G FYE++F+ A L + ++++ K G + M G P + Y++ L++ Sbjct: 278 NCVLLTRVGGFYEMYFEHAEEVGPLLNLKVSQK-KTSGGPVSMAGFPFFQLDRYLKVLVE 336 Query: 101 -IGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVAR 158 + +AI E+ SP E K G RR V R+VTPGTL ++ + P +NY Sbjct: 337 DLNRHVAIAEEYRNSPSEQIKSGGLMHNRR-VTRIVTPGTLIDENFMDPYANNY------ 389 Query: 159 IRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGN 218 I I + + + S+S + L + + + +SL E + Sbjct: 390 ------IMAIHLPSDSLEGSSSFQEALNTG----------------TGQKKESLSENIQT 427 Query: 219 VAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTI 278 + P D I +T F+ E A + Y+ + Sbjct: 428 LKDWAP--MLDAKIP------------TETVIRFTDDEIKAGNVLLHYVTDRLQGLSMKL 473 Query: 279 GYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASP 337 P R D + ID + +LEI +T+ G SLL I ++T +G RL E +++P Sbjct: 474 QPPIRHDNMQIMTIDKNSMRSLEIKKTMREGFFAGSLLHAIRRTVTKSGARLLNEWLSAP 533 Query: 338 LTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG 397 T + IN+RLD I FI NP L + I +L S D R + + + RG+ D+ + Sbjct: 534 STSLSVINSRLDLITRFISNPDLSDAITVLLHRSHDTQRLVQKFALNRGDADDLLRLAST 593 Query: 398 IRSGINILNLFLKNDLPEE 416 I++ +I+N LK+ + E Sbjct: 594 IKATEDIVN-HLKSTMSSE 611 >gi|70987164|ref|XP_749062.1| DNA mismatch repair protein Msh3 [Aspergillus fumigatus Af293] gi|74668576|sp|Q4WGB7|MSH3_ASPFU RecName: Full=DNA mismatch repair protein msh3; AltName: Full=MutS protein homolog 3 gi|190359852|sp|B0YCF6|MSH3_ASPFC RecName: Full=DNA mismatch repair protein msh3; AltName: Full=MutS protein homolog 3 gi|66846692|gb|EAL87024.1| DNA mismatch repair protein Msh3 [Aspergillus fumigatus Af293] gi|159123167|gb|EDP48287.1| DNA mismatch repair protein Msh3, putative [Aspergillus fumigatus A1163] Length = 1123 Score = 250 bits (639), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 238/898 (26%), Positives = 422/898 (46%), Gaps = 124/898 (13%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK---------- 75 TP+ +Q IEIK + D+++ +G + F +DA +A++ L I GK Sbjct: 211 TPLEKQVIEIKRKHMDTILVVEVGYKFRFFGEDARIAAKELSIVCIP-GKMRFDEHPSEA 269 Query: 76 HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLV 134 HL + +PVH + ++++L+ G+++ + Q+E + L+A + R + L Sbjct: 270 HLDR-FASASIPVHRLHVHVKRLVSAGYKVGVVRQLETAALKAAGDNRNAPFSRKLTNLY 328 Query: 135 TPGTLTED----QLLSPTDSN-------YLMAVARIRTEWAIAWID---ISTGIFKISTS 180 T GT +D +P S Y++ + A W + + GI + + Sbjct: 329 TKGTYVDDVEGLDGATPAASGGASPATGYMLCITETN---AKGWGNDEKVHVGIVAVQPN 385 Query: 181 NHDRLISD-------------IMRIDPREIIFSEKELSHAEYK-------SLFETLGN-- 218 D + D ++ I P E++ ELS A K S T G+ Sbjct: 386 TGDVIYDDFDDGFMRSEVETRLLHIAPCELVIV-GELSKATEKLVQHLSGSKLNTFGDKV 444 Query: 219 ----VAVAQPNVFFDHSISESRIADYYNI-----TTVDTFGSFSQVEKTAAAAAISYIKK 269 VA + V HS +A++Y T D + + ++K + Sbjct: 445 RVDRVAKKKTAVAESHS----HVANFYAAKLKAANTADDAPASNLLQKVLNLPEQVTVCL 500 Query: 270 TQMVNKPT----------IGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTI 318 + M+ T Y + +S + +++ +LEI + + S + SL T+ Sbjct: 501 SAMIQHLTEYGLEHIFELTKYFQHFSSRSHMLLNANTLVSLEIYQNQTDHSAKGSLFWTL 560 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQ-KIL--KSSPDVP 375 D + T G RL + + PL D ++ R++++ + + KI+ K D+ Sbjct: 561 DRTQTRFGQRLLRKWVGRPLLDKERLEERVNAVEELKSPERTVQAERLKIMLGKIKSDLE 620 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEE------LRGAVEKLKKLPQ 429 ++L R+ G+ ++ + +++ I ++ P++ + G E + ++P Sbjct: 621 KNLIRIYYGKCTRPELLTVLQTLQT---IAQEYVDVKTPQDSGFTSPILG--EAIARVPS 675 Query: 430 SLEKTLSSMLSDDLPTFKRDGG--FLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 L + + ++ + D F R+ +ET + + K IAS++ + E Sbjct: 676 ILGDVVKFLNKINMHAARNDDKYEFFRES-----EETEGISEH-KCGIASVEHELEEHRS 729 Query: 488 I-----KNLKIKHNNNLG--YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 + K K+ + + G Y IEV +S+A++ + ++ ++RF T E+ Sbjct: 730 VAAGILKWPKVTYVTSSGIEYLIEVENSAAAIKRVPAS----WVKVSGTKKVSRFHTPEV 785 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 I L + + ++F L I +S + Q +A +D ++LA +A + Sbjct: 786 IQLLRQRDQHKEALAAACDQAFAALLAEIASNYQSFRDCVQSLATLDCLLSLAAIASQPG 845 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 Y +P + T V+ GRHP+VE+ L ++ ND DL D + + L+TGPNM Sbjct: 846 YVKPEYTDQTCIHVEQGRHPMVEQLLLDS----YVPNDIDL----DSDKTRALLVTGPNM 897 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GGKS+++RQ ALI IMAQ+GSYVPA A +G++D +F+R+G+ DN+ +G STFMVE+ ET Sbjct: 898 GGKSSYVRQIALIAIMAQIGSYVPARSAKLGMLDAVFTRMGAFDNMLAGESTFMVELSET 957 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 A IL QAT +S VILDE+GRGT+T DG++IA A ++Y+ T R L TH+ L+++++ Sbjct: 958 ADILKQATPRSLVILDELGRGTSTHDGVAIAQAVLDYMVRTIRSLTLFITHYQHLSNMAQ 1017 Query: 781 SL--KRFHNATLQVSDSNEG----IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 S N ++ ++S G I FL++V G+A SYG+ V +LA LP ++ A Sbjct: 1018 SFPDHELRNVHMRFTESGSGKDEEITFLYEVGEGVAHRSYGLNVARLANLPAPLLEVA 1075 >gi|195397830|ref|XP_002057531.1| GJ18185 [Drosophila virilis] gi|194141185|gb|EDW57604.1| GJ18185 [Drosophila virilis] Length = 918 Score = 250 bits (639), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 182/610 (29%), Positives = 307/610 (50%), Gaps = 44/610 (7%) Query: 254 QVEKTAAAAAISYIKKTQMVNKP-TIGYPERE--DIQSTLFIDSAARSNLEILR------ 304 Q+ A AI Y+ ++N +G+ E + D++ + +DSAA + L I+ Sbjct: 263 QLAAEALRVAIRYL---DLINDAGNLGHYELKQLDLKRFVHLDSAAVAALNIMPKPGTHP 319 Query: 305 TLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPI 364 T+ R QS+L +D+ T G RL A+ + PL S +N R + + +++P ++ + Sbjct: 320 TMPSYRWQSILGVLDHCRTPQGHRLMAQWVKQPLRSSEILNDRHNIVQCLLESPETLDTL 379 Query: 365 -QKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFL-------KNDLPEE 416 LK PD+ +L + +D+ I I IL L L ++ L Sbjct: 380 SMDYLKRIPDILMLTKKLMRRKASLQDLFRIYQVILRTPKILQLLLSLEHSTVQSVLCAP 439 Query: 417 LRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIA 476 + +E L L Q +E+ + D + ++ ++ D L E + + + Sbjct: 440 FKSFLEDLTGLKQMVEQVV------DFESIEKGEYLVKSTFDNRLMELQQTMTELYNKME 493 Query: 477 SLQLKYAEETKI--KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTR 534 LQ K EE + K +K+++ LGY + T SVL+K+ R + + R Sbjct: 494 RLQNKCCEELDLDGKMVKLENVAKLGYHLRTTIKDDSVLRKN--KNYRIV--DVIKGGVR 549 Query: 535 FTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAI 594 FT+ +L + + + E + + + L + + +A +D ++ AI Sbjct: 550 FTSDKLESYADEFASCRTRYEEQQQSIVEEIIQVAVGYAAPLTSLNNELAQLDCLVSFAI 609 Query: 595 LAK--EQNYCRP--IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSG 650 A+ Y RP + + + +++D RHP +E L++ S FIAN S +K+ Sbjct: 610 AARCAPTPYVRPKMLAEGAGKLLLEDVRHPCLE--LQEHVS--FIAN----SVAFEKDKC 661 Query: 651 KLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGR 710 ++++TGPNMGGKST++R V+MA +G++VP S A I +VD + RVG++DN+ G Sbjct: 662 NMFIITGPNMGGKSTYIRSVGTAVLMAHVGAFVPCSMATISMVDSILGRVGASDNIIKGL 721 Query: 711 STFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLAT 770 STFMVEMIET+ I+ AT +S VI+DE+GRGT+T +G IAW+ E+L + +C L AT Sbjct: 722 STFMVEMIETSGIIRTATEKSLVIIDELGRGTSTYEGCGIAWSIAEHLAKQTKCFTLFAT 781 Query: 771 HFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVIS 830 HFHE+T L+++L N + + L++V PG+ + S+GIQV +LA P V+ Sbjct: 782 HFHEITKLAETLPTVKNVHMAAVADEDNFTLLYQVRPGVMEKSFGIQVARLANFPEHVVQ 841 Query: 831 RAYDILKTFE 840 A ++ FE Sbjct: 842 NAQEVYNEFE 851 >gi|190359869|sp|A6R7S1|MSH3_AJECN RecName: Full=DNA mismatch repair protein MSH3; AltName: Full=MutS protein homolog 3 Length = 1166 Score = 250 bits (639), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 241/893 (26%), Positives = 429/893 (48%), Gaps = 116/893 (12%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK---------- 75 TPM RQ I+IK + D+L+ +G + F +DA +A++ L I GK Sbjct: 253 TPMERQIIDIKKKHMDTLLVVEVGYKFRFFGEDARVAAKELSIVCIP-GKLRFDEHPSEA 311 Query: 76 HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLV 134 HL + +PVH + ++++L++ G+++ + Q+E + L+A + R + L Sbjct: 312 HLSR-FASASIPVHRLHVHVKRLVEAGYKVGVVRQLETAALKAAGENRNAPFVRKLTNLY 370 Query: 135 TPGTLTED----------QLLSPTDSNYLMAVARIRTEWAIAWID---ISTGIFKISTSN 181 T GT +D + T + YL+ +A A W + + GI + + Sbjct: 371 TKGTYIDDVEGLEESSGNSGSASTSTGYLLCMAESN---AKGWGNDEKVHVGIVAVQPAT 427 Query: 182 HDRLISD-------------IMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFF 228 D + D ++ I P E + E+S A K + +++ ++ NVF Sbjct: 428 GDVIYDDFEDGFMRSEIEMRLLHIAPCEFLIV-GEMSKATEK----LVQHLSGSKTNVFG 482 Query: 229 D----HSISESRIADYYNITTVDTF--GSFSQVEKTAAAAAISYIKK------------T 270 D +S+S+ A + + V +F G + T AA + ++K + Sbjct: 483 DKIRVERVSKSKTAAAESHSHVSSFYAGRMNAKGTTGDVAASNLLEKVLTLPEDVTICLS 542 Query: 271 QMVNKPT----------IGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTID 319 M+ + Y + +S + ++ +NLEI + + + + SL T+D Sbjct: 543 SMIKHMSEFGLEYVFDLTKYFQPFSARSHMLLNGNTLTNLEIYQNQTDHTSKGSLFWTLD 602 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP---ILINPIQKIL-KSSPDVP 375 + T G RL + + PL D T++ R+ ++ +Q+P + I ++ +L K D+ Sbjct: 603 RTKTRFGQRLLRKWVGRPLLDKTELEERVSAVEE-LQDPSKTVQIERLKGLLSKIRADLE 661 Query: 376 RSLSRLKIGRG-EPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 +SL R+ GR P+ + V++ ++L DL + LP + Sbjct: 662 KSLIRIYYGRCTRPELLTVLQTLQLIADEYVHLKSPADLGFSSPTITTAIAALPAIRDDV 721 Query: 435 LSSMLSDDLPTFKRDGG--FLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK--- 489 ++ + + K+D F R+ ++ET + +S IA +Q + E + Sbjct: 722 VTYLNKINEEAAKKDDKYCFFRE-----VEETDEI-TESNLGIADVQHRLQEHCAVAAEI 775 Query: 490 --NLKIKHNNNLG--YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 K+++ G Y IEV +S ++ K + + R I ++RF T E++ Sbjct: 776 LGKKKVQYTTVAGIEYLIEVENSPYNL--KKVPASWRKI--SGTKKVSRFHTPEVVQY-M 830 Query: 546 RITNATNSALLIELE-SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP 604 R + AL + +F L I + +S + +A +D ++LA +A + Y +P Sbjct: 831 RERDQYKEALAAACDKAFHALLADISTKYQSFRDCILALATLDCLLSLANIASQPGYIKP 890 Query: 605 IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 + T V+ GRHP+VE+ L ++ ND +L + + L+TGPNMGGKS Sbjct: 891 AYTDKTRISVQRGRHPMVEQLLLDT----YVPNDIELHT----DETRALLVTGPNMGGKS 942 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 +++RQ ALI IM Q+GSYVPA A +G++D +++R+G+ DN+ +G STFMVE+ ETA IL Sbjct: 943 SYVRQVALISIMGQIGSYVPADSATLGMLDAVYTRMGAFDNMLAGESTFMVELSETADIL 1002 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR 784 QAT +S VILDE+GRGT+T DG++IA A ++Y+ R L TH+ L+ +++ + Sbjct: 1003 KQATPRSLVILDELGRGTSTHDGVAIAQAVLDYMVRNLRSLTLFITHYQNLSSMAREFPK 1062 Query: 785 --FHNATLQVSDS---NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 N ++ ++S + I FL++V G+A SYG+ V +LA +P++V+ A Sbjct: 1063 GELRNVHMKFTESGMDGQDITFLYEVGEGVAHRSYGLNVARLANVPDSVLEVA 1115 >gi|67522503|ref|XP_659312.1| hypothetical protein AN1708.2 [Aspergillus nidulans FGSC A4] gi|40745672|gb|EAA64828.1| hypothetical protein AN1708.2 [Aspergillus nidulans FGSC A4] gi|259487049|tpe|CBF85409.1| TPA: protein required for mismatch repair in mitosis and meiosis (Eurofung) [Aspergillus nidulans FGSC A4] Length = 1186 Score = 250 bits (638), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 222/861 (25%), Positives = 401/861 (46%), Gaps = 71/861 (8%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P +QY EIK D++VF++ G FYEL+ +DA + + + LT R ++ M G Sbjct: 292 SPFEKQYWEIKQKFWDTVVFFKKGKFYELYENDATIGHQLFDLKLTDR-----VNMRMVG 346 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL--EAKKRGNKS-------LVRRNVVRLVTP 136 VP + +H+ + + G +IA +Q ES L E ++R K ++RR + ++T Sbjct: 347 VPESSLDHWANQFVAKGFKIARVDQSESALGKEMRERDGKKGGGKEEKIIRRELACVLTA 406 Query: 137 GTLTEDQLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFKISTSNHD----RLISD 188 GTL E +L S + +A+ E + IA++D +TG F ++ D + + Sbjct: 407 GTLVEGAMLQDDMSTFCVAIKEAIIENLPAFGIAFVDTATGQFFLTEFVDDVDMTKFETF 466 Query: 189 IMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA---QPNVFF---DHSISESRIADYYN 242 + + P+E++ + +S + L G + +P F D ++ E ++Y+ Sbjct: 467 VAQTRPQELLLEKSTVSQKALRILKNNTGPTTIWNYLKPGKEFWEADITVRELDASEYFV 526 Query: 243 ITTVDTFGSFSQVEK---------TAAAAAISYIKKTQMVNK-PTIG-YPEREDIQ--ST 289 D ++ + + +A A + Y++ ++ TIG + + I+ S+ Sbjct: 527 SQDNDNIHAWPEALRQARDKELVMSAFGALVQYLRLLKLERDLITIGNFSWYDPIKKASS 586 Query: 290 LFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRL 348 L +D N+EI + G + +L + ++ +T G R+F + + PL D +IN RL Sbjct: 587 LVLDGQTLINMEIFANSFDGGVDGTLFQLLNRCMTPFGKRMFKQWVCHPLVDPQRINARL 646 Query: 349 DSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF 408 D+++ + + + L PD+ R +SR+ +D + +G ++L Sbjct: 647 DAVDALNADSSVRDQFASQLTKMPDLERLISRIHAANCRAQDFVRVLEGFEQIEYTMSLL 706 Query: 409 LKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFL-RDGADASLDETRSL 467 + E + G + +K +P E + D K G + + G + D ++ Sbjct: 707 KDSGSGEGVIGQL--IKSMPDLTELLEYWKTAFDHNQAKESGILVPKPGVEEDFDSSQET 764 Query: 468 RDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQ 527 Q + + L + E + + N Y +EV ++ + + Sbjct: 765 IRQLHQDLDDLLKRTRRELGSTAICYRDNGKEIYQMEVPIKVKNIPRN-------WDQMS 817 Query: 528 TMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIID 587 + R+ EL ++ A + I E + E + +A +V++ +D Sbjct: 818 ATKQVKRYYFPELRTTIRKLQEAQETHSQIVKEVSKRFYARFDEHYSTWLSAVRVVSQLD 877 Query: 588 --ISIALAILAKEQNYCRP--IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDL-- 641 IS+A A + + CRP + D + ++ RHP + ++ FI ND L Sbjct: 878 CLISLAKASSSLGEPSCRPTFVEDERSVLEFEELRHPCLISSVDD-----FIPNDIQLGG 932 Query: 642 SCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVG 701 S PN + LLTG N GKST LR + VIMAQ+G Y+P A + VD++ SR+G Sbjct: 933 SGPN------IDLLTGANAAGKSTLLRMTCVAVIMAQVGCYLPCRSARLTPVDRIMSRLG 986 Query: 702 SADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHET 761 + DN+ + +STF VE+ ET IL++AT +S VILDE+GRGT++ DG+++A A + ++ Sbjct: 987 ANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVLHHVATH 1046 Query: 762 NRCRGLLATHFHELTDLSKSLKRFHNATLQVS-DSNE-GIIFLHKVIPGIADHSYGIQVG 819 G ATH+H L ++ +++ D NE + FL+K+ G+A+ S+G+ Sbjct: 1047 IGALGFFATHYHSLAAEFENHPEIKPKRMKIHVDENERRVTFLYKLEDGVAEGSFGMHCA 1106 Query: 820 KLAGLPNTVISRAYDILKTFE 840 + G+PN VI RA K +E Sbjct: 1107 AMCGIPNKVIERAEVAAKQWE 1127 >gi|255945341|ref|XP_002563438.1| Pc20g09420 [Penicillium chrysogenum Wisconsin 54-1255] gi|211588173|emb|CAP86271.1| Pc20g09420 [Penicillium chrysogenum Wisconsin 54-1255] Length = 960 Score = 250 bits (638), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 122/272 (44%), Positives = 182/272 (66%), Gaps = 7/272 (2%) Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 F+ L +I + + V+ +D++ + A LA+EQ RPI+++ T + GRHP Sbjct: 673 FDRLRREVILNLVKIRRNAAVMDELDVACSFATLAQEQQMVRPILNDGTCHKIVAGRHPT 732 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 V+ L++Q + F++NDC L +S ++WL+TGPNM GKSTFLRQNALI I+AQ+GS Sbjct: 733 VKLGLEEQG-RSFVSNDCFLG-----DSERIWLITGPNMAGKSTFLRQNALITILAQVGS 786 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VPA+YA IGIVD++FSR+G+AD+L +STFMVEM+ETA+IL QAT +SFVI+DE+GRG Sbjct: 787 FVPAAYAEIGIVDQIFSRIGAADDLFRDQSTFMVEMLETATILKQATPKSFVIMDEVGRG 846 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII- 800 T DG ++++A + +LH N+ R L ATHFH L D+++ ++ V D G Sbjct: 847 TTPEDGTAVSFACLYHLHNHNQSRVLFATHFHALADMTEDFEKLARYCTDVKDMASGAFS 906 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 F+H++ G+ S+ ++V +LAGLP + A Sbjct: 907 FVHRLRKGVNRQSHALKVAQLAGLPKETLELA 938 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 103/407 (25%), Positives = 189/407 (46%), Gaps = 41/407 (10%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLI- 99 + +V R+G FYEL+F+ A + L + L + K G +PM G P + +++ L+ Sbjct: 62 NCVVLTRVGGFYELYFEQAEELAPLLNLKLATK-KTNGGPVPMAGFPFFQLDRFLKTLVG 120 Query: 100 KIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAV--- 156 + +AI E+ E K R + R V R++TPGTL +++ + P++ N+L+AV Sbjct: 121 DLNKYVAISEEFAVNAEDKTRAGGLMFDRKVARIITPGTLIDEKFIDPSEHNFLLAVYLD 180 Query: 157 ------------------------ARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRI 192 + + + ++W+D+STG F + L S I RI Sbjct: 181 VPSLQSQLKQHADNDSQSSHHHILSSVPQQVGLSWLDLSTGDFFTQLTTTQMLPSAIARI 240 Query: 193 DPREIIFSE--KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTV---- 246 REI+ + +++ E + L + FF + + ++++ + Sbjct: 241 GAREILVDQNVQDIIGHELQMLVGHDHRLV-----TFFQYPGAFKPVSEWGAMLESPIPE 295 Query: 247 DTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL 306 D SF+ E A + + YI+ + + P R+ + ++ ID + S LEIL T Sbjct: 296 DARASFTPEEVAAGYSLLEYIRVQLQGSNLKLQPPIRKHLNESMSIDRNSLSGLEILETA 355 Query: 307 -SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQ 365 G + SLL + + T +G RL +R+ SP T IN RLD ++ FI++ L + + Sbjct: 356 RDGFGKGSLLHAVRRTCTKSGARLLRDRLTSPSTSLQVINERLDLVSVFIEHVELRDRVI 415 Query: 366 KILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKND 412 ++LK S D R + + G+G+P D+ + I + + + L ++ Sbjct: 416 QLLKRSHDSQRLVQKFAFGKGDPDDLICLSRAIEASKEVRQVLLDHN 462 >gi|258578083|ref|XP_002543223.1| DNA mismatch repair protein msh6 [Uncinocarpus reesii 1704] gi|237903489|gb|EEP77890.1| DNA mismatch repair protein msh6 [Uncinocarpus reesii 1704] Length = 1200 Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 224/861 (26%), Positives = 393/861 (45%), Gaps = 75/861 (8%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P +QY EIK D++VF++ G FYEL+ +DA + + + LT R ++ M G Sbjct: 313 SPFEKQYWEIKQKFWDTVVFFKKGKFYELYENDATIGHQLFDLKLTDR-----VNMRMVG 367 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL--EAKKRGNKSLVRRNVVR----LVTPGTL 139 VP + H+ + + G +IA +Q ES L E ++RG+K + + R ++T GTL Sbjct: 368 VPESSLEHWANQFVAKGFKIARVDQSESALGKEMRERGDKKKGDKIIKRELSCVLTAGTL 427 Query: 140 TEDQLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFKISTSNHD----RLISDIMR 191 + +L S Y +++ + + ++++D +TG F ++ D + + + + Sbjct: 428 VDGAMLQDDMSTYCVSIKEALVDDLPAFGVSFVDTATGQFFLTEFVDDIDMTKFETLVAQ 487 Query: 192 IDPREIIFSEKELSHAEYKSLFETLGNVAVA---QPN-VFFDHSIS--ESRIADYYNITT 245 P+E++ + +S + L + +P F+D S + E +Y+ Sbjct: 488 TRPQELLLEKGFMSPKALRILKNNTNPTTIWNHLKPGREFWDASTTRRELEAGEYFVSMD 547 Query: 246 VDTFGSFSQVEK---------TAAAAAISYIKKTQM------VNKPTIGYPEREDIQSTL 290 D ++ +V + ++ A I Y++ ++ + T P R+ S+L Sbjct: 548 QDNIEAWPEVLQQVRDKDLVISSFGALIQYLRMLKIERDLITIGNFTWYDPIRK--ASSL 605 Query: 291 FIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLD 349 +D NLEI + G + +L + ++ IT G RLF + + PL DS +IN RLD Sbjct: 606 VLDGQTLINLEIFANSFDGGQHGTLFQLLNRCITPFGKRLFKQWVCHPLMDSRQINARLD 665 Query: 350 SINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFL 409 ++ + + + L PD+ R +SR+ G + +D + +G + L Sbjct: 666 AVEALNADSSIRDQFSSQLTKMPDLERLISRVHAGTCKCQDFVRVLEGFEQIDYTMGLVK 725 Query: 410 KNDLPEELRG----AVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETR 465 + + + G ++ L L Q E + + D TF G D DAS + Sbjct: 726 QTGSGDGVIGQLISSMPDLTSLLQYWETAFDRVKAKDSGTFIPQPGVEED-FDASNERIE 784 Query: 466 SLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIH 525 SL +++ + E + + N Y +EV ++ K + Sbjct: 785 SLEGDLNQLLKRCR----RELNCSAIVYRDNGKEIYQLEVPIKVKNIPKS-------WDQ 833 Query: 526 RQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAI 585 + R+ EL L ++ A I E E + A ++I+ Sbjct: 834 MSATKQVKRYYFPELRGLIRKLQEAQEMHSQIVKEVTGRFYARFDEHYPTWLAAVKIISQ 893 Query: 586 IDISIALAILAKEQNY--CRPII--DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDL 641 +D I LA + Y CRP+ D + ++ RHP + SS FI ND L Sbjct: 894 LDCLIGLAKASAAIGYPSCRPVFVDDERSVLEFQELRHPCM------LSSGDFIPNDVKL 947 Query: 642 SCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVG 701 ++ + LLTG N GKST LR VIMAQ+G YVP + A + VD++ SR+G Sbjct: 948 G----GDTSSINLLTGANAAGKSTVLRMTCTAVIMAQIGCYVPCASARLTPVDRIMSRLG 1003 Query: 702 SADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHET 761 + DN+ +STF VE+ ET IL++AT++S VILDE+GRGT++ DG+++A A + ++ Sbjct: 1004 ANDNIFGAQSTFFVELSETKKILSEATSRSLVILDELGRGTSSYDGVAVAQAVLHHVATH 1063 Query: 762 NRCRGLLATHFHELTDLSKSLKRF--HNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVG 819 G ATH+H L + ++V + + + FL+K+ G+A+ S+G+ Sbjct: 1064 IGALGFFATHYHSLAAEFEGHPEIAPRRMRIRVDEEDRRVTFLYKLENGVAEGSFGMHCA 1123 Query: 820 KLAGLPNTVISRAYDILKTFE 840 + G+P+ V+ RA K +E Sbjct: 1124 SMCGIPSKVVERAEVAAKQWE 1144 >gi|255539477|ref|XP_002510803.1| DNA mismatch repair protein MSH3, putative [Ricinus communis] gi|223549918|gb|EEF51405.1| DNA mismatch repair protein MSH3, putative [Ricinus communis] Length = 1100 Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 243/917 (26%), Positives = 422/917 (46%), Gaps = 134/917 (14%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ +Q +++K+ PD L+ +G Y F +DA +A R LGI K + IP Sbjct: 111 TPLEKQVLDLKTKYPDVLLMIEVGYKYRFFGEDAEIAGRVLGIYAHKDHNFMTASIPTFR 170 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLVTPGTL--TED 142 + VH +++L+ G+++ + +Q E + ++A R + L T TL ED Sbjct: 171 LNVH-----VRRLVSAGYKVGVVKQTETAAIKAHGDNKAGPFCRGLSALYTKATLEAAED 225 Query: 143 ----QLLSPTDSNYLMAV----------ARIRTEWAIAWIDISTGIFKISTSNHDRLISD 188 + +SNYL V + T ++ISTG N L S Sbjct: 226 VGGREEGCCGESNYLCCVVDKSIENGVDSGFDTRIGFVAVEISTGDVVYGEFNDGFLRSG 285 Query: 189 ----IMRIDPREIIFSEKELSHAEYKSLFETLG---NVAV--AQPNVFFDHSISESRIAD 239 ++ + P E++ + LS K L G NV V A + F D I Sbjct: 286 LEAVVLSLMPAELLLGDP-LSKQTEKLLLAYAGPSSNVRVERASGHHFNDGGALAEVILL 344 Query: 240 YYNITTVDTFGSFSQV-EKTAAAAAISYIKKTQMVNKP---------TIGYPEREDIQST 289 Y N+ +Q+ E+T ISY+ ++N P TI + ++ + Sbjct: 345 YENMGEHKAEDDENQMMERTHQD--ISYLAIEGIMNMPDLAVQALALTISHLKQFGFEQI 402 Query: 290 LFIDSAAR---------------SNLEILRTLS-GSREQSLLKTIDYSITGAGGRLFAER 333 L + ++ R LE+LR S GS SL +++++T +G RL Sbjct: 403 LRLGASFRPLTSNVEMNLSANTLQQLEVLRNNSNGSDSGSLFNIMNHTLTISGSRLLRHW 462 Query: 334 IASPLTDSTKINTRLDSINFF---------IQNP----------ILINP--------IQK 366 + PL D I+ RLD+++ +QN +I P + + Sbjct: 463 VTHPLCDRNMISARLDAVSEIAESMGSYKALQNTGDFDEEDSDVAIIQPDFYHLLSTVLE 522 Query: 367 ILKSSPDVPRSLSRLKIGRGEPKD-IAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLK 425 +L SPD+ R ++R+ + IAVI+ + +G + L ++ + + A Sbjct: 523 MLGRSPDIQRGITRIFHRTATASEFIAVIQAILIAGKQLRRLQIEEEQNNKRVQAKTVRS 582 Query: 426 KLPQSLEKTLSS-----MLSDDLPTFKRDGG---------FLRDGADASLDETRSLRDQS 471 L + L T+SS + L T ++ + +G + + + Sbjct: 583 VLLKKLILTVSSSSVVGHAAKLLSTLNKEAAEHGDLTNLIVISNGQFPEVASSNKAVHLA 642 Query: 472 KRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSN 531 K + SL Y ++ K+++L+ + + IE L D++ ++ + Sbjct: 643 KEKLDSLINLYRKQLKMRSLEFMSVSGTTHLIE--------LPADVKVPLNWVKINSTKK 694 Query: 532 LTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIA 591 + R+ E++ +++ A +++ +++ + + Q +A +D + Sbjct: 695 MIRYHPPEVLTALDQLALANEELMVVCRAAWDSFLRSFAKHYAEFQAVIQALAALDCLHS 754 Query: 592 LAILAKEQNYCRPII--DNSTNFI-VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKN 648 LAIL+K +NY RP+ DN I + GRHP++E L F+ ND L + Sbjct: 755 LAILSKNKNYVRPVFVDDNEPVQIHISSGRHPVLETILLDN----FVPNDTCLHVDGEH- 809 Query: 649 SGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLAS 708 ++TGPNMGGKS ++RQ ALIV+MAQ+GS+VPAS A + ++D +++R+G++D++ Sbjct: 810 ---CQVVTGPNMGGKSCYIRQVALIVMMAQVGSFVPASSAKLHVLDGIYTRMGASDSIQQ 866 Query: 709 GRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLL 768 GRSTF+ E+ ET+ IL + T S VI+DE+GRGT+T DG +IA+AT+ +L E RC L Sbjct: 867 GRSTFLEELSETSHILRKCTGYSLVIIDELGRGTSTHDGEAIAYATLCHLLEQKRCMVLF 926 Query: 769 ATHFHEL----TDLSKSLKRFHNATLQ------VSDS---NEGIIFLHKVIPGIADHSYG 815 TH+ ++ T S+ +H + L +DS NE + +L+K++PG+++ S+G Sbjct: 927 VTHYPKIANIRTGFLNSVGAYHVSYLMAEKNNDATDSKFDNEDVTYLYKLVPGVSERSFG 986 Query: 816 IQVGKLAGLPNTVISRA 832 +V +LA LP + I RA Sbjct: 987 FKVAQLAQLPTSCIERA 1003 >gi|195474019|ref|XP_002089289.1| GE19033 [Drosophila yakuba] gi|194175390|gb|EDW89001.1| GE19033 [Drosophila yakuba] Length = 917 Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 194/689 (28%), Positives = 338/689 (49%), Gaps = 43/689 (6%) Query: 185 LISDIMRIDPREIIFSEKELSHAEYKSLFETLG-NVAVAQPNVFFDHSISESRIADYYNI 243 L + ++ + P+E + + +A K+L E G + V + + D +R+ + Sbjct: 188 LEATVVLLGPKECLLPSVDGDYAAVKTLLERNGVMITVPKKSSANDLLQDLNRLLRFAKG 247 Query: 244 TTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKP-TIGYPE--REDIQSTLFIDSAARSNL 300 D G + A+ A S IK +VN +G+ E + D++ + +DSAA + L Sbjct: 248 QQEDATGLKELQLQLASNALKSAIKYLDLVNDAGNLGHYEIKQLDLKRFVHLDSAAVAAL 307 Query: 301 EILR------TLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFF 354 I+ ++ R QS++ +D+ T G RL + + PL +N R + + Sbjct: 308 NIMPKPGTHPSMPSYRWQSVMGVLDHCRTPQGHRLMGQWVKQPLRSRDILNDRHNIVQCL 367 Query: 355 IQNPILINPIQ-KILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLK--N 411 +++P + + LK PD+ +L + +D+ I I IL + L+ N Sbjct: 368 LESPDTMETLSLDYLKRIPDILMLTKKLMRRKANLQDLFRIYQVILRTPKILKVLLELGN 427 Query: 412 DLPEELRGA-----VEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRS 466 E + A +E L L Q +E+ + D +R ++ D+ L E + Sbjct: 428 STIESVICAPFKSFLEDLTGLKQMVEQVV------DFEAIERGEYLVKASFDSRLMELQQ 481 Query: 467 LRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRF 523 + + +LQ+K +E + +K+++ LG+ +T SVL+K+ R Sbjct: 482 TMTELYSKMENLQVKCTQELDLDGKSQVKLENVAKLGHHFRITLKDDSVLRKN--KNYRI 539 Query: 524 IHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVI 583 + + RFT+ +L + + +L E + + + L + + + Sbjct: 540 V--DVIKGGVRFTSDKLEGYADEFASCRTRYEEQQLSIVEEIIQVAVGYAAPLTSLNNEL 597 Query: 584 AIIDISIALAILAKEQN--YCRPII--DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDC 639 A +D ++ AI A+ Y RP + + + +++D RHP +E L++ S FIAN Sbjct: 598 AQLDCLVSFAIAARSAPTPYVRPQMLEEGARELVLQDVRHPCLE--LQEHVS--FIANSV 653 Query: 640 DLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSR 699 D K ++++TGPNMGGKST++R V+MA +G++VP S A I +VD + R Sbjct: 654 DFK----KEKCNMFIITGPNMGGKSTYIRSVGTAVLMAHVGAFVPCSLATISMVDSILGR 709 Query: 700 VGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLH 759 VG++DN+ G STFMVEMIET+ I+ AT++S VI+DE+GRGT+T +G IAW+ E+L Sbjct: 710 VGASDNIIKGLSTFMVEMIETSGIIRTATDKSLVIIDELGRGTSTYEGCGIAWSIAEHLA 769 Query: 760 ETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVG 819 + +C L ATHFHE+T L+++L N + + L++V PG+ + S+GIQV Sbjct: 770 KETKCFTLFATHFHEITKLAETLPTVKNCHMAAVADADNFTLLYQVRPGVMEKSFGIQVA 829 Query: 820 KLAGLPNTVISRAYDILKTFEKLYHHNQK 848 +LA P+ V+ A ++ FE + QK Sbjct: 830 RLANFPDHVVQNAQEVYNEFEDEHVDKQK 858 >gi|313608852|gb|EFR84636.1| DNA mismatch repair protein MutS [Listeria monocytogenes FSL F2-208] Length = 503 Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 172/530 (32%), Positives = 280/530 (52%), Gaps = 43/530 (8%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM++QY+EIK D+ +F+R+GDFYE+FF+DAL AS+ L ITLT R + IPMCG Sbjct: 5 TPMIKQYLEIKDKYQDAFLFFRLGDFYEMFFEDALNASQILEITLTGREGGTKEKIPMCG 64 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+A+ YI LI+ G+++AICEQ+E P + K +V+R VV+L++PGT+ +++ L Sbjct: 65 VPYHSASGYIDTLIEKGYKVAICEQVEDP-----KTTKGMVKREVVQLISPGTVMDERGL 119 Query: 146 SPTDSNYLMAVARIR-TEWAIAWIDISTGIFK--ISTSNHDRLISDIMRIDPREIIFSEK 202 ++NY+ ++ E+ A+ D+STG K + ++ DRLI+++ + RE+I S Sbjct: 120 KAKENNYIASLYCYEGKEYGFAYSDLSTGELKSTVIEASEDRLINELTTLSTRELIVSAS 179 Query: 203 ELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 E E L +V Q + F S+ E N V S S EK A Sbjct: 180 EK---------EVLSDVMKEQLGLTF--SVHEEDTIPRENEKLVTRHMSLS--EKRAIGK 226 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDYS 321 + Y+K+TQ + + + + + +D ++ NLE+ ++ G R+ +LL +D + Sbjct: 227 LLHYLKETQKRDLGHLQQAVHYETSNYMKMDYYSKRNLELAESIRGKGRQGTLLWLLDNT 286 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSI-----NFFIQNPILINPIQKILKSSPDVPR 376 T GGR+ + I PL D KI R + + NFF + ++ N LK+ D+ R Sbjct: 287 QTAMGGRMLKQWIDRPLIDRNKIIERQNDVSELMANFFERLELVEN-----LKNVYDLER 341 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 R+ G +D+ +R+ + I L + + EL ++ ++L + LE+ Sbjct: 342 LAGRVAYGNVNARDLIQLRNSLYQIPRIRATLLSMNSKSLTELANQLDPCEELTEKLEEA 401 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK 494 + D P R+GG ++DG ++ LD R K IA L+ K E T IK +K+ Sbjct: 402 ----IMDSAPISIREGGIIKDGYNSQLDTYRDASRNGKTWIAELERKERELTGIKTMKVG 457 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLE 544 N GY+IEVT ++ +L + R+ +QT++N R+ T EL + E Sbjct: 458 FNRVFGYYIEVTRANTHLL-----PEGRYERKQTLTNAERYITPELKEKE 502 >gi|117556981|gb|ABK35676.1| putative mismatch repair protein [Tetrahymena thermophila] Length = 1134 Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 240/913 (26%), Positives = 404/913 (44%), Gaps = 151/913 (16%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 T M+QY +IK+ + D ++ ++MG FYELF++DA++A+R L IT T + H CG Sbjct: 226 TSAMKQYWQIKAKHFDKIILFKMGKFYELFYEDAIIATRLLDITFTNKELH-------CG 278 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P + KL++ G+++ + EQ K+ +V R++ +++T GT+ Sbjct: 279 FPEKALEKFASKLVQFGYKVVVVEQ------TSKKTTTGIVDRDITQIITKGTINFTFEE 332 Query: 146 SPTDSNYLMAV-ARIRTEWAIAWIDISTGIFKISTSNHD----RLISDIMRIDPREIIFS 200 D YL+ + + E+ I + T ++ D RL S + P+EI++ Sbjct: 333 QNHDPKYLLVIRQKTNQEFGIIVYESFTSKIQVGLLQDDKTQTRLKSFLCVTKPQEIVYD 392 Query: 201 E--------KELSHAEYKSLFETL---GNVAVAQPNVFFDHSISESRIADY----YNITT 245 K L ++S+ + + Q F+ S + Y +I T Sbjct: 393 PGNITSDILKILKSQYFQSVMSPMRDNKDQWSTQLATFYIEKQFGSEVQKYPQELRDIRT 452 Query: 246 VDTF-GSFSQVEKTAAAAAISYIKKTQMVNK--PTIGYPE----REDIQSTLFIDSAARS 298 D G ++ A A SY+ T + + Y E + + +DS A Sbjct: 453 NDEIRGQVINLKYAALAGFFSYMDSTLQLESILNSSEYVECDFDNKQFSQRMILDSQALQ 512 Query: 299 NLEILR----TLSGSREQ------SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRL 348 +LEI L+ + +Q +LL +DY+ T G R+ + + SPL D + IN R Sbjct: 513 HLEIFENSQTALTTTFQQVDQKKGTLLNYLDYTKTPYGKRMLKKWVCSPLIDISAINDRY 572 Query: 349 DSINFFIQNPILINPIQKILKSSPDVPR---SLSRLKIGRGEPKDIAVIRDGIRSGINIL 405 D+I N + + Q + D+ R S+ R + + + AV+ + I S Sbjct: 573 DAIEDIQNNLAMKDKFQYGIARYADIERLCSSIYRYSVKQKHAEK-AVMYENISSA---- 627 Query: 406 NLFLKNDLPEELRGAVEKLKKLPQSLEKTL----------------------SSMLSDDL 443 +E + + +K++ + +E+T LS DL Sbjct: 628 -------RLKEFKNLINSMKEIEKLIEETFMVNQENFKSQRLKRLCTYRLKGDPKLSGDL 680 Query: 444 PTF-----------------KRDGGFLRDGA--DASLDETRSLRDQSKRIIASLQLKYAE 484 P K G ++ D E S+R Q K L +Y E Sbjct: 681 PKVSSFIKVLEDIIVLDSKEKIAGKYIEQPVPKDGFCQEYDSIRLQIKAYQDELD-QYLE 739 Query: 485 ETKIK----NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 + K+K ++ NN Y I+V + ++K + F + + RFT+ Sbjct: 740 QLKVKFKTNDISYAFLNNRQYDIQVNKTLFDKIQKPAD----FSLQSHSGSFQRFTS--- 792 Query: 541 IDLENRITNATNSALLIELESF--EILSNAII-------EQSESLDNASQVIAIID--IS 589 R T + A + ELE EILSN + ++ D ++A +D IS Sbjct: 793 -----RFT-SEKVAFIEELEEQLKEILSNFCVTVFREFYKKKHVWDKFVSIVAELDCLIS 846 Query: 590 IALAILAKEQN-YCRPIIDNSTN-----FIVKDGRHP-IVEKTLKQQSSKPFIANDCDLS 642 I+ A CRP+I + N F +K GR+P +++ LKQ + + N ++ Sbjct: 847 ISHACFTMADGVMCRPVIKFAKNQKETFFYLKQGRNPNLIQLDLKQVPNDIILGNIAGMN 906 Query: 643 C-PNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVG 701 PN + +LTGPNMGGKST LR L I+AQ+G YVPA +VD++F+R+G Sbjct: 907 AQPN------IMILTGPNMGGKSTTLRLFCLSAILAQIGCYVPAEQCEFSLVDRIFTRIG 960 Query: 702 SADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHET 761 + D L G+STF +EM E + + T S I DE+GRGT+T DG++IA+ ++Y E Sbjct: 961 AGDKLIEGKSTFYIEMEEVKNSIMYGTYNSIAIFDELGRGTSTFDGVAIAFGILKYFIEK 1020 Query: 762 NRCRGLLATHFHELTDLSKSLKR--FHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVG 819 + R + ATHF L + + K F++ + ++ +IF +K+ G A+ S+GI + Sbjct: 1021 IQSRCIFATHFFLLINELRFYKEISFYHMEYYYDNKSKKLIFKYKLKQGNAESSFGIDLA 1080 Query: 820 KLAGLPNTVISRA 832 K+ G+ +V++ A Sbjct: 1081 KIVGIEQSVLNLA 1093 >gi|312215396|emb|CBX95348.1| hypothetical protein [Leptosphaeria maculans] Length = 1223 Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 122/264 (46%), Positives = 178/264 (67%), Gaps = 7/264 (2%) Query: 575 SLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPF 634 +L + V+ +D++ A A+LA E++ RPI+ + + GRH +VE L +Q K F Sbjct: 669 TLRRNAAVLDELDVACAFALLAMEKSLVRPILTSEPKHNIVGGRHSVVENGLVEQGRK-F 727 Query: 635 IANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVD 694 NDC L +DK ++WL+TGPNM GKST+LRQNALI I+AQ GS+VPA YA IG+VD Sbjct: 728 APNDCQL---DDKE--RIWLITGPNMAGKSTYLRQNALISILAQTGSFVPAEYAEIGLVD 782 Query: 695 KLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWAT 754 K+FSRVGSADNL +STFMVEM+ETA IL +AT +SFVI+DE+GRGT DG+++++A Sbjct: 783 KIFSRVGSADNLYQDQSTFMVEMLETAQILKEATPRSFVIMDEVGRGTTPEDGIAVSYAC 842 Query: 755 IEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG-IIFLHKVIPGIADHS 813 + +L+ N+CR L ATHFH L D++ ++ V + +G ++H++ G+ S Sbjct: 843 LHHLYHVNQCRTLFATHFHALADMTNDFEQLGCYCNDVLEEPDGKFSYVHRLRRGVNRES 902 Query: 814 YGIQVGKLAGLPNTVISRAYDILK 837 + ++V ++AGLP I+ A +LK Sbjct: 903 HALKVARVAGLPEQAIATAATVLK 926 Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 117/440 (26%), Positives = 205/440 (46%), Gaps = 49/440 (11%) Query: 19 EENLKSSTPMMRQYIEIKSIN-PDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHL 77 +E+++ P + Q + + +V R+G FYEL+FD A + L + TKR Sbjct: 14 QEDVEPEYPPLLQQVRNNMVKFSHCVVLTRVGGFYELYFDHADEFAPLLNLKKTKRKALR 73 Query: 78 GKDIP---MCGVPVHTANHYIQKLIK-IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRL 133 G P M G P + + Y++ L++ +AI ++ + K RG RR V R+ Sbjct: 74 GSKKPPVSMAGFPAYQLDRYLKILVQDQSKHVAISDEFLNDAPTKARGEPQYTRR-VTRI 132 Query: 134 VTPGTLTEDQLLSPTDSNYLMAVA--------------------------RIRTEWAIAW 167 VTPGTL ++ + P ++NYL+++ RTE +AW Sbjct: 133 VTPGTLIDEHFMDPWENNYLLSIHVNPDVLEKDKAVKNSPGSPSVSSVLNLPRTEVGLAW 192 Query: 168 IDISTGIFKISTSNHDRLISDIMRIDPREIIFSE--KELSHAEYKSLFETLGNVAVAQPN 225 ID+S+G F +++ L S + RI PREI+ +E ++ S+ + G+V Sbjct: 193 IDLSSGDFLTQSTDIASLPSAVARIKPREIVLDSIFEERDYSRIVSILQEDGHVIT---- 248 Query: 226 VFFDHSISESRIADYYNITT--VDTFGS--FSQVEKTAAAAAISYIKKTQMVNKPTIGYP 281 F + S + S + D+ + V F + F+ E A + + Y+ + ++ + P Sbjct: 249 -FQEPSETPSTVKDWAPMLEDLVQDFDTTDFAPSEVAAGGSLLHYVNHQLLGSRTRLRAP 307 Query: 282 EREDIQSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTD 340 R + ID + LEI T+ G+ E SLL ++ ++T +G RL ER+++P Sbjct: 308 VRHHAGEHMHIDKNSLRALEIRNTIRDGTYEGSLLHSLKMTVTKSGTRLLTERLSAPSMS 367 Query: 341 STKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRS 400 + IN RLD + IQ P L + +L+ + D R +++ GRG+ D+ + I + Sbjct: 368 LSTINDRLDLVEEMIQYPQLRQDVVTLLEQTFDSLRLVTKFAYGRGDADDLMELSKTILT 427 Query: 401 GINILNLF-----LKNDLPE 415 +I N+ L+ +PE Sbjct: 428 TSHICNILREHAALRAAIPE 447 >gi|171687511|ref|XP_001908696.1| hypothetical protein [Podospora anserina S mat+] gi|170943717|emb|CAP69369.1| unnamed protein product [Podospora anserina S mat+] Length = 1030 Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 129/293 (44%), Positives = 189/293 (64%), Gaps = 22/293 (7%) Query: 562 FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPI 621 F L ++I L + V+ +D+ + A LA+E+N RPI++ ST I+ GRHP Sbjct: 739 FASLRQSVILNLVKLRRNAAVLDELDVLTSFASLAREKNLVRPILNTSTATIIVGGRHPT 798 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDK--NSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 VE L++Q + F ND LS P G++WL+TGPNM GKSTFLRQ+ALI I++Q+ Sbjct: 799 VESALQEQG-RTFTKNDLFLSSPPSSPSQHGRIWLVTGPNMAGKSTFLRQSALITILSQI 857 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS++PA +A +G+VD +FSR+GS+DNL + +STFMVEM+ET++IL QAT +SFVI+DEIG Sbjct: 858 GSFIPADHAQLGLVDAIFSRLGSSDNLYASQSTFMVEMLETSTILRQATPRSFVIMDEIG 917 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ-------- 791 RGT DG ++A+A++ +L + NRCR L ATHFH++ L K N T+Q Sbjct: 918 RGTTPQDGTAVAFASLHHLVKVNRCRALFATHFHDIAGLIKE----QNLTVQDGGQDGAV 973 Query: 792 -------VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILK 837 D N G +++HK+ G+ S+ ++V +LAGLP+ I A ++L+ Sbjct: 974 EMYCTDVEEDENGGFVYVHKLQKGVNRTSHALKVARLAGLPDKAIQVAREVLE 1026 Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 101/414 (24%), Positives = 178/414 (42%), Gaps = 49/414 (11%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 + ++ R+G FYEL+F+ A L + ++++ + G + M G P + +++ L++ Sbjct: 118 NCVLLTRVGGFYELYFEHADEYGPLLNLKVSQKKTNAGP-VSMAGFPFFQLDRFLKILVQ 176 Query: 101 -IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVA-- 157 + +AI E+ + +K R + R V R+VTPGTL ++ + P +NY+MAV Sbjct: 177 DLNRHVAIAEEFPNDASSKIRSGGLMHDRRVARIVTPGTLIDENFMDPYANNYVMAVHLP 236 Query: 158 -------------------------RIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRI 192 + T +AW+D+STG F + L S + R+ Sbjct: 237 EKAELSDHVSRQAGQQAINTPDPADDVPTHIGLAWLDLSTGYFFTQPATLASLGSVLSRV 296 Query: 193 DPREIIFSEKELSHAEYK---SLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTF 249 PRE++ +K L AE + S+ + + P F S+ + + I + Sbjct: 297 SPREVVL-DKALESAEDQGIASILQEESYLVTYSPQGEF-QSLDDWQPMLEGKIPAKEA- 353 Query: 250 GSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SG 308 F++ E A + + Y+ + P R + ID +LEI T+ G Sbjct: 354 KKFTEEEVDAGSLLLHYVGDRLQGLSMKLQPPVRHVNMEVMNIDKNTMRSLEIKETVRDG 413 Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKIL 368 + + SLL + G P T IN RLD + FIQ+ L + I +L Sbjct: 414 TFKGSLLAISLICLLGF-----------PSTSLKAINARLDLVERFIQDEELRDAIIVLL 462 Query: 369 KSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN--DLPEELRGA 420 + S D R + + + RG+ D+ + I+S +I+ L + PEE + A Sbjct: 463 RRSHDSQRLVQKFALNRGDADDLLQLASTIKSTEDIVALLEASIASQPEEAKPA 516 >gi|289621384|emb|CBI52167.1| unnamed protein product [Sordaria macrospora] Length = 1299 Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 132/287 (45%), Positives = 176/287 (61%), Gaps = 32/287 (11%) Query: 582 VIAIIDISIALAILAKEQNYCRPIIDNST---------------NFIVKDGRHPIVEKTL 626 V+ +DI+ +LA LA EQN RPI+ +S ++ GRHP VE +L Sbjct: 1016 VLDELDIATSLARLATEQNLVRPILHDSQPQENHGKGTTQQTQRKTVIVGGRHPTVEPSL 1075 Query: 627 KQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPAS 686 + F NDC + P G++WL+TGPNM GKSTFLRQNALI I+AQMG YVPA Sbjct: 1076 LSRGMT-FQKNDCLVGSPG---QGRIWLITGPNMAGKSTFLRQNALITILAQMGCYVPAD 1131 Query: 687 YAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLD 746 YA +GIVD +FSRVGSADNL + +STFMVEM+ETA+IL QAT +SFVI+DEIGRGT D Sbjct: 1132 YAELGIVDAIFSRVGSADNLYADQSTFMVEMMETAAILRQATPRSFVIMDEIGRGTTPED 1191 Query: 747 GLSIAWATIEYLHETNRCRGLLATHFHELTDLSK---------SLKRFHNATLQVSDSNE 797 G ++A+A++ +L N+CRGL ATHFH + D+ + S + +D E Sbjct: 1192 GTAVAFASLHHLLTVNKCRGLFATHFHAVGDMVREQGLMIEDGSSSANGGVAMYCTDVEE 1251 Query: 798 ----GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 G +++HK+ G S+ ++V +LAGLP I A +L T E Sbjct: 1252 DESGGFVYVHKLRKGTNRQSHALKVARLAGLPEPAIKIAQQVLATQE 1298 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 116/421 (27%), Positives = 194/421 (46%), Gaps = 41/421 (9%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 EE +S +++QY + + ++ R+G FYEL+F+ A L + + +R G Sbjct: 261 EEKERSYPAVIQQYRQNMQKFDNCVLLTRVGGFYELYFEHAEEVGPLLNLKVAQRRTSAG 320 Query: 79 KDIPMCGVPVHTANHYIQKLIK-IGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLVTP 136 +PM G P Y++ L++ + +AI E+ + SP E K G RR V R++TP Sbjct: 321 -SVPMAGFPFFQLERYLKVLVQDLNRHVAIAEEYKNSPSEQIKSGGLMHSRR-VSRIITP 378 Query: 137 GTLTEDQLLSPTDSNYLMAVARIRTE-----------------------WAIAWIDISTG 173 GTL ++ + P +NY+MA+ T+ +AW+D+STG Sbjct: 379 GTLIDENFMDPYANNYIMAIHLPATKSEEGTSSQEALNSGEGQQKKESLIGLAWLDLSTG 438 Query: 174 IFKISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSIS 233 F ++ L S + RI PREI+ +K L AE ++ L + F++S Sbjct: 439 NFYTQQTSLISLGSVLSRISPREIVL-DKSLESAEEHNILAVLN-----EERYPFNYSPQ 492 Query: 234 ESRIADYYNITTV-------DTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDI 286 I + + +T F+ E A + ++ + P R D Sbjct: 493 GGDIQTLKDWAPMLDAKIPAETVIRFTDDEIKAGNVLLHCVRDRLQGLSMKLQPPIRHDN 552 Query: 287 QSTLFIDSAARSNLEILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKIN 345 + ID + +LEI +T+ G SLL I ++T +G RL E +++PLT + IN Sbjct: 553 MQIMAIDKNSMRSLEIKQTMRDGKFAGSLLHAIRRTVTKSGARLLNEWLSAPLTSLSVIN 612 Query: 346 TRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINIL 405 RLD I FI NP L + I +L+ S D R + + + RG+ D+ + I++ +I+ Sbjct: 613 ARLDLITCFISNPDLSDAITVLLRRSHDTQRLVQKFALNRGDADDLLRLASTIKATEDIV 672 Query: 406 N 406 N Sbjct: 673 N 673 >gi|194758569|ref|XP_001961534.1| GF14885 [Drosophila ananassae] gi|190615231|gb|EDV30755.1| GF14885 [Drosophila ananassae] Length = 917 Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 183/620 (29%), Positives = 308/620 (49%), Gaps = 45/620 (7%) Query: 254 QVEKTAAAAAISYIKKTQMVNKP-TIGYPERE--DIQSTLFIDSAARSNLEILR------ 304 Q+ A AI Y+ +VN P +G+ E + D++ + +DSAA + L I+ Sbjct: 261 QLASDALKVAIKYL---DLVNDPGNLGHYELKQLDLKRFVHLDSAAVAALNIMPKPGTHP 317 Query: 305 TLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPI 364 ++ R QS+L +D+ T G RL + + PL + R + + ++ P + + Sbjct: 318 SMPSYRWQSILGVLDHCRTPQGHRLMGQWVKQPLRRREILTDRHNVVECLLEAPDTLETL 377 Query: 365 Q-KILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LKNDLPEELRGA- 420 LK PD+ +L + +D+ I I IL + L+N E + A Sbjct: 378 SLDYLKRIPDILMLTKKLMRRKATLQDLFRIYQVILRTPKILKVLFELENSTVESMICAP 437 Query: 421 ----VEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIA 476 +E L L Q +E+ + D +R ++ D+ L E + + + Sbjct: 438 FKSFLEDLTGLKQMVEQVV------DFEAIERGEYLVKASFDSRLMELQQTMTELYSKME 491 Query: 477 SLQLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLT 533 LQ K +EE + + +K+++ LG+ +T SVL+K+ R + + Sbjct: 492 RLQTKCSEELNLDGKQQVKLENVAKLGHHFRITLKDDSVLRKN--KNYRIV--DVIKGGV 547 Query: 534 RFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALA 593 RFT+ +L + +L E + + + L + + +A +D ++ A Sbjct: 548 RFTSDKLESYAEEFGSCRTRYEEQQLSIVEEIIQVAVGYAAPLTSLNNELAQLDCLVSFA 607 Query: 594 ILAKEQN--YCRPII--DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNS 649 I A+ Y RP + + + +++D RHP +E L++ S FIAN + K+ Sbjct: 608 IAARSAPIPYVRPKMLEEGAGQLVLEDVRHPCLE--LQEHVS--FIANSVEFK----KDK 659 Query: 650 GKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASG 709 ++++TGPNMGGKST++R V+MA +G++VP S A I +VD + RVG++DN+ G Sbjct: 660 CNMFIITGPNMGGKSTYIRSVGTAVLMAHVGAFVPCSSATITMVDSILGRVGASDNIIKG 719 Query: 710 RSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLA 769 STFMVEMIET+ I+ AT +S VI+DE+GRGT+T +G IAW+ E+L + +C L A Sbjct: 720 LSTFMVEMIETSGIIRTATEKSLVIIDELGRGTSTYEGCGIAWSIAEHLAKETKCFTLFA 779 Query: 770 THFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVI 829 THFHE+T L++SL N + + L++V PG+ + S+GIQV +LA P V+ Sbjct: 780 THFHEITKLAESLATVKNCHMAAVADADNFTLLYQVRPGVMEKSFGIQVARLASFPEHVV 839 Query: 830 SRAYDILKTFEKLYHHNQKD 849 A ++ FE + QK+ Sbjct: 840 QNAQEVYNEFEDEHAGKQKE 859 >gi|50306133|ref|XP_453028.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|74660536|sp|Q6CSR1|MSH3_KLULA RecName: Full=DNA mismatch repair protein MSH3; AltName: Full=MutS protein homolog 3 gi|49642161|emb|CAH01879.1| KLLA0C18590p [Kluyveromyces lactis] Length = 1029 Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 246/912 (26%), Positives = 431/912 (47%), Gaps = 144/912 (15%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 N K T + +Q+ E+K + D+++ R+G Y+ F DA + S L I L K L + Sbjct: 145 NNKKLTELDQQFKELKLKHMDTILCVRVGYKYKFFAKDAEIVSNILQIKLVPGKKTLDES 204 Query: 81 IP---------MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVV 131 P C +P + ++Q+L+ +++A+ EQ E+ K + SL R + Sbjct: 205 DPNDRNYRKFQYCSIPDTRLHVHLQRLVFFNYKVAVVEQTETSALKKNNNSGSLFTREIK 264 Query: 132 RLVTPGTL--------TEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD 183 + T + +ED++L S + +++ + I + +I HD Sbjct: 265 NIFTKVSYGINETFDKSEDRILGDLTSVWAISINETSKMRKVNLISVQLNSGEIV---HD 321 Query: 184 RLISDIM----------RIDPREIIFSEKELSHAEYKSLFETLG-NVAVAQ------PNV 226 + DI+ ++P EII +E+EL +++F L ++ Q PN+ Sbjct: 322 QFSDDILLNVNLEARIRYLNPTEII-TEEELP-PSIRTIFTKLNQDIQFYQSHKEACPNL 379 Query: 227 F-----FDHSISESRIADYYNITTVDTFGSFSQVEKTA----AAAAISYIKKTQMVNKPT 277 F D + R+ ++ + ++ S E T A+ S+ K MV Sbjct: 380 FDALQGLDLNNELKRL-----LSVLHSY--LSTFENTKVLYFASNYSSFTAKNFMV---- 428 Query: 278 IGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSITGAGGRLFAERIAS 336 P R I+S LEI + ++ SLL +D++ T G RL + I+ Sbjct: 429 --LP-RNTIES-----------LEIFENSTTNKTNGSLLWVMDHTRTQFGYRLLRKWISK 474 Query: 337 PLTDSTKINTRLDSINFFIQ--NPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVI 394 PL D I R D+I ++ + I ++L+ S D+ R+L+R+ G K++ Sbjct: 475 PLIDLKSILDRQDAITCIMKEVHSIFFESFNELLRKSIDLERALNRIAYGSTSRKEVYFF 534 Query: 395 RDGIRSGINIL---NLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS-DDLPTFKRDG 450 I + ++ + F+ + L +E A+ K L ++ + L + S DLP F + Sbjct: 535 LKQIATFASLFKSHHTFIHDQLHKE-NSALRKTSCLLFNILQNLDAFFSATDLPLFLQ-- 591 Query: 451 GFLRDGADASLDETRSLRDQSKRIIASLQL-----------KY--AEETK------IKNL 491 DA+LD +D K +I L KY EE K ++N+ Sbjct: 592 ---MINVDAALD-----KDSHKNVIEFFNLNKYDFPEGLLHKYRDIEEVKTELDDELQNI 643 Query: 492 K-------IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLE 544 K + + + Y IEV ++ A + + ++ + ++RF T + +L Sbjct: 644 KRVLKRPTLSYKDTKDYLIEVRNTQAKTVPSN------WVKVNSTKAVSRFRTPKTEELV 697 Query: 545 NRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP 604 ++ + L+ + F+ I+++ + +A D ++LA + NY +P Sbjct: 698 GKLLYHNDLLNLLAEDEFKRFLQRIVDRYAEIKTCINNLATYDCILSLAATSSNVNYVKP 757 Query: 605 -IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 + + VK+GR+PI+E ++ ND +S NSGK+ ++TGPNMGGK Sbjct: 758 KLTELHQKVKVKNGRNPIIESL-----DVNYVPNDVLMSS----NSGKINIITGPNMGGK 808 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 S+++RQ AL+VIM Q+G Y+PA A + I D++F+R+GS D+L + +STF VEM E I Sbjct: 809 SSYIRQVALLVIMTQIGCYIPADSAEMSICDRIFTRIGSHDDLLNAKSTFQVEMSEVLHI 868 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEY-LHETNRC-RGLLATHFHELTDL-SK 780 LN +T +S ++LDE+GRGT T DGLSI++A + Y ++ + C L TH+ L + SK Sbjct: 869 LNSSTPRSLLLLDEVGRGTGTHDGLSISFAILNYFVYLADNCPLVLFITHYSALCQIDSK 928 Query: 781 SLKRFHNATLQVSDSNE---GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILK 837 + +H + ++ E +IFL+K++ G A +SYG V KL+ +P +I+RA+++ + Sbjct: 929 LIANYHMSYIEKHQPGEKWTNVIFLYKLVLGQAHNSYGFNVAKLSNIPTEIINRAFEVSE 988 Query: 838 TFEKLY---HHN 846 EK+ HHN Sbjct: 989 --EKILSSKHHN 998 >gi|195495129|ref|XP_002095136.1| GE19856 [Drosophila yakuba] gi|194181237|gb|EDW94848.1| GE19856 [Drosophila yakuba] Length = 1190 Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 256/967 (26%), Positives = 432/967 (44%), Gaps = 170/967 (17%) Query: 4 EFSSPQKLYSEQ-------------IDLEEN-LKSSTPMMRQYIEIKSINPDSLVFYRMG 49 EF P K+ +Q + + EN L +P +RQ+ +KS N D ++F+++G Sbjct: 226 EFLQPDKIMDKQKRRPDHPDYDKSTLHVPENFLNGLSPGVRQWWVLKSSNYDCVLFFKVG 285 Query: 50 DFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICE 109 FYEL+ DA + LG T ++ + G P + + LI G ++A E Sbjct: 286 KFYELYHMDADVGVNELGFT------YMRGEFAHSGFPEISFDKMSTILIDRGFKVARVE 339 Query: 110 QIESPLEAKKRGNK-------SLVRRNVVRLVTPGTL---TEDQLLSPTDSNYLMAVAR- 158 Q E+P +R + +V R + ++ GT ++ ++ NY++A+ Sbjct: 340 QTETPDMMTERCKRIKATKFDKVVAREICQITNRGTQVFGSQCKIGPNHQPNYMLAIVEQ 399 Query: 159 ---IRTEWAIAWIDISTGIFKIST----SNHDRLISDIMRIDPREIIFSEKELSHAEYKS 211 + + + +ID S G F + N RL++ + P ++ + LS + Sbjct: 400 DEGTWSRYGVCFIDTSIGDFHLGEFEDDKNCSRLLTLLSHHMPVLLLNEKSALSQRSQQI 459 Query: 212 LFETLGNVAVAQPNVFFDHSISESRI----------------------------ADYYNI 243 + LG + Q + + S + D+ + Sbjct: 460 VRTVLGGILKEQVPGNGNQACSAEKTLKLLAERYYAGNGADDNWPLVLRTMQSDMDHLGL 519 Query: 244 TTVDTFGSFSQVEKTAAAAAISYIKKTQMVNK--PTIGY-----PER-EDIQ-------- 287 T D + ++ A I +I K ++ K P Y P++ ED + Sbjct: 520 TPNDNY----KLALKALGQCIFFIHKCKLEPKVLPMARYQLYVPPDQLEDAKPAVASTLR 575 Query: 288 -STLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINT 346 S + +D+ SNL I+ E SLL T+D+ T G RL + +P D I Sbjct: 576 RSHMVLDATTLSNLRII-----GEEHSLLSTLDHCCTKFGKRLLHHWLCAPSCDVAVIKE 630 Query: 347 RLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI-------GRGEPKDIAVIRD--- 396 R D+I ++ + ++ +L PD+ R+L+++ + P A++ + Sbjct: 631 RQDAIGELMRMTSELQEVRALLAPMPDLERNLAQIHLFGNKRIKQMDHPDSRAILFEEKI 690 Query: 397 -------GIRSGINILNLFLKNDLPEELRGA----VEKLKKLPQSLEKT---LSSMLSDD 442 G + + N K LP + ++ +LP+S E T LS L Sbjct: 691 YNKQKLLGFMAVLKGFNALTK--LPTMFHQCETALLRRITQLPES-EGTFPDLSKELQYF 747 Query: 443 LPTFKRDG----GFL--RDGADASLDETR-SLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 F D G + + G DA D S+ + KR+ + L+ E+ + +I + Sbjct: 748 ATAFDHDAAAKTGVIAPQAGMDAEYDAAMDSIGEIEKRLKSYLE----EQERHFGCRITY 803 Query: 496 --NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSN--LTRFTTLELIDLENRITNA- 550 ++ Y ++V S AS K + QT R+TT E L + +A Sbjct: 804 FGSDKKRYQLDVPESHASKANKSYS-----LEGQTKGKKPCRRYTTAETRALLKDMQHAE 858 Query: 551 -TNSALLIELES--FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY-CRPII 606 T + +L +L FE SN + + +D +A +D+ +LA A +Q C P + Sbjct: 859 ETRNTVLKDLARRLFEKFSNYYDQWKQCID----CVANLDVLCSLAEYAGQQMVICVPEL 914 Query: 607 DNSTN--FI-VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 + T FI +++G HP V ++ +I N +L ++ L LLTGPNMGGK Sbjct: 915 VSGTEQPFIQLEEGYHPCV-------NASTYIPNGLELGTASE---APLSLLTGPNMGGK 964 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 ST +R+ L+VIMAQ+G+++PA+ + +VD++F+R+G+ D++ +G STF+VE+ ET+ I Sbjct: 965 STLMREVGLLVIMAQIGAHIPATTCRLSLVDRIFTRLGAQDDILAGHSTFLVELNETSLI 1024 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLK 783 L AT S V+LDE+GRGTAT DG +IA + + +L +CR L +TH+H L D K Sbjct: 1025 LKHATCHSLVLLDELGRGTATYDGTAIAASVVNFLANL-KCRTLFSTHYHNLIDFFHDDK 1083 Query: 784 RF---HNATLQVSDSN-----EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI 835 R H A + ++ N E + FL+K G SYG KLAG+P +I RAY++ Sbjct: 1084 RITLGHMACMVENEDNADPTQETVTFLYKYTAGACPKSYGFNAAKLAGMPQGIIKRAYEL 1143 Query: 836 LKTFEKL 842 K E + Sbjct: 1144 SKKVEAI 1150 >gi|195441342|ref|XP_002068471.1| GK20488 [Drosophila willistoni] gi|194164556|gb|EDW79457.1| GK20488 [Drosophila willistoni] Length = 1182 Score = 248 bits (632), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 251/940 (26%), Positives = 411/940 (43%), Gaps = 160/940 (17%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 E+ L S +P +RQ+ +KS N D ++F+++G FYEL+ DA + LG T ++ Sbjct: 245 EKFLNSLSPGVRQWWVLKSDNYDCVLFFKVGKFYELYHWDADVGVNELGFT------YMR 298 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNK-------SLVRRNVV 131 + G P + + LI G+++A EQ E+P +R + +V R + Sbjct: 299 GEFAHSGFPEISFDKMSTILIDRGYKVARVEQTETPDMMTERCKRIKATKFDKVVAREIC 358 Query: 132 RLVTPGT--LTEDQLLSPT-DSNYLMAV----ARIRTEWAIAWIDISTGIFKISTSNHD- 183 ++ GT + P NY++A+ A +++ I +ID S G F + D Sbjct: 359 QITDRGTQVFGSQCAIGPNHQPNYMLALVEQDAGTTSKFGICFIDTSMGDFHLGEFEDDK 418 Query: 184 ---RLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRI--- 237 RL++ + P +I LS + L L + Q + + Sbjct: 419 SCSRLLTLLSHHMPVLLIHERSSLSARTQQILRTVLSGILKEQLPCSGSQVCNAEKTLKL 478 Query: 238 --------ADYYNIT------TVDTFGSFSQVEKT----AAAAAISYIKKTQMVNK--PT 277 D + +T +D G E A I YI+K ++ K P Sbjct: 479 LAEGYYAQGDTWPVTLRSMQSDMDHLGLTPSDEHKLTLKALGQCIFYIQKCKLEPKVMPM 538 Query: 278 IGY----PERE---DIQST-----------LFIDSAARSNLEILRTLSGSREQSLLKTID 319 Y P E D++++ + +D+ SNL I+ E SLL T+D Sbjct: 539 ARYQLYRPPDEIAPDVKASQASQILKRRSHMVLDATTLSNLRIV-----GEEHSLLATLD 593 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLS 379 + T G RL + +P + I R +I Q L ++ +L PD R L+ Sbjct: 594 HCCTKMGKRLLHYWLCAPSCEVNVIEERQVAIGELRQMSEL-QEMRALLAPMPDFERHLA 652 Query: 380 RLKI-------GRGEPKDIAVI-------RDGIRSGINILNLFLKNDLPEELRGAVEKLK 425 ++ + P A++ + + S + IL F + L Sbjct: 653 QIHLFGTKQVKESQHPDSRAILFEEKLYNKQKLLSFMGILKGF-------------DALT 699 Query: 426 KLPQSLEKTLSSMLS--DDLPTFKRDGGF------LRDGADASLDETRSLRDQSKRIIAS 477 K+P ++ SS+L LP+ G F LR A+A D + + Sbjct: 700 KIPLMFQQCESSLLKRITQLPSHAEGGLFPDLSSQLRYFAEA-FDHEAAAKSGVIAPQPG 758 Query: 478 LQLKY--------AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTM 529 + +Y A E ++K+ ++ + G + A + L+ + H+ Sbjct: 759 MDAEYDAVMDRIHAIEDRLKSYLVEQERHFG--CRLAYFGADKKRYQLDVPESHAHKANK 816 Query: 530 SNLTRFTTLE--LIDLENRITNATNSALLIELESFEILSNAIIE------------QSES 575 S TLE L + R T A LL +++ E N +++ E Sbjct: 817 S-----YTLEGQLKGKKRRYTTAETKTLLKDMQQAEEARNVVLKDLARRVFEKFSNHYEH 871 Query: 576 LDNASQVIAIIDISIALAILAKEQ-NYCRP--IIDNSTNFI-VKDGRHPIVEKTLKQQSS 631 +A++D+ +LA A +Q C P + FI +++G HP V ++ Sbjct: 872 WKQCIDCVAMLDVLASLAEYANQQLAICVPQFVSGGDQPFIQLEEGYHPCV-------NA 924 Query: 632 KPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIG 691 +I N +L +N L LLTGPNMGGKST +RQ L+VIMAQ+GS++PA+ + Sbjct: 925 STYIPNGLEL---GTENEAALSLLTGPNMGGKSTLMRQMGLLVIMAQIGSHIPAASCRLS 981 Query: 692 IVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIA 751 +VD++F+R+G+ D++ +G STF+VE+ ET+ IL AT S V+LDE+GRGTAT DG +IA Sbjct: 982 LVDRIFTRLGAQDDILAGHSTFLVELNETSLILKHATCHSLVLLDELGRGTATYDGTAIA 1041 Query: 752 WATIEYLHETNRCRGLLATHFHELTDLSKSLKRF---HNATLQVSDSN------EGIIFL 802 + + +L + +CR L +TH+H L D ++ KR H A + +DS+ E + FL Sbjct: 1042 ASVVNFLAQL-KCRTLFSTHYHNLIDFFQNDKRITLGHMACMVENDSDTQDPTQETVTFL 1100 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 +K G SYG KLAG+P +I RAY + K E + Sbjct: 1101 YKYTAGACPKSYGFNAAKLAGMPQGIIKRAYALSKKVEAI 1140 >gi|225556119|gb|EEH04409.1| DNA mismatch repair protein msh3 [Ajellomyces capsulatus G186AR] Length = 1166 Score = 248 bits (632), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 242/893 (27%), Positives = 423/893 (47%), Gaps = 116/893 (12%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK---------- 75 TPM RQ I+IK + D+L+ +G + F +DA +A++ L I GK Sbjct: 253 TPMERQIIDIKKKHMDTLLVVEVGYKFRFFGEDARVAAKELSIVCIP-GKLRFDEHPSEA 311 Query: 76 HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLV 134 HL + +PVH + ++++L+ G+++ + Q+E + L+A + R + L Sbjct: 312 HLTR-FASASIPVHRLHVHVKRLVAAGYKVGVVRQLETAALKAAGENRNAPFVRKLTNLY 370 Query: 135 TPGTLTED----------QLLSPTDSNYLMAVARIRTEWAIAWID---ISTGIFKISTSN 181 T GT +D + T + YL+ + A W + + GI + + Sbjct: 371 TKGTYIDDVEGLEESSGNSGSASTSTGYLLCMTESN---AKGWGNDEKVHVGIVAVQPAT 427 Query: 182 HDRLISD-------------IMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFF 228 D + D ++ I P E + E+S A K L + L ++ NVF Sbjct: 428 GDVIYDDFEDGFLRSEIEMRLLHIAPCEFLIV-GEMSKAT-KKLVQHLSG---SKTNVFG 482 Query: 229 D----HSISESRIADYYNITTVDTF--GSFSQVEKTAAAAAISYIKK------------T 270 D +S+S+ A + + V +F G + T AA + ++K + Sbjct: 483 DKVRVERVSKSKTAAAESHSHVSSFYAGRMNAKGTTGDVAASNLLEKVLKLPEDVTICLS 542 Query: 271 QMVNKPT----------IGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTID 319 M+ + Y + +S + ++ +NLEI + + + + SL T+D Sbjct: 543 SMIKHMSEFGLEYVFDLTKYFQPFSARSHMLLNGNTLTNLEIYQNQTDHTSKGSLFWTLD 602 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP---ILINPIQKIL-KSSPDVP 375 + T G RL + + PL D T++ R+ ++ +Q+P + I ++ +L K D+ Sbjct: 603 RTKTRFGQRLLRKWVGRPLLDKTELEERVSAVEE-LQDPSKTVQIERLKGLLSKIRADLE 661 Query: 376 RSLSRLKIGRG-EPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 +SL R+ GR P+ + V++ ++L DL + LP + Sbjct: 662 KSLIRIYYGRCTRPELLTVLQTLQLIADEYVHLKSPADLGFSSPTITTAIAALPAIRDDV 721 Query: 435 LSSMLSDDLPTFKRDGG--FLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK--- 489 ++ + + K+D F R+ ++ET + +S IA +Q + E + Sbjct: 722 VTYLNKINAEAAKKDDKYCFFRE-----VEETDEI-TESNLGIADVQHRLQEHCTVAAEI 775 Query: 490 --NLKIKHNNNLG--YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 K+++ G Y IEV +S ++ K + + R I ++RF T E++ Sbjct: 776 LGKKKVQYTTVAGIEYLIEVENSPYNL--KKVPASWRKI--SGTKKVSRFHTPEVVQY-M 830 Query: 546 RITNATNSALLIELE-SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP 604 R + AL + +F L I + +S + +A +D ++LA +A + Y +P Sbjct: 831 RERDQYKEALAAACDKAFHALLADISTKYQSFRDCILALATLDCLLSLANIASQPGYIKP 890 Query: 605 IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 + T V+ GRHP+VE+ L ++ ND +L + + L+TGPNMGGKS Sbjct: 891 AYTDKTRVSVQRGRHPMVEQLLLDT----YVPNDIELHT----DETRALLVTGPNMGGKS 942 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 +++RQ ALI IM Q+GSYVPA A +G++D +++R+G+ DN+ +G STFMVE+ ETA IL Sbjct: 943 SYVRQVALISIMGQIGSYVPADSATLGMLDAVYTRMGAFDNMLAGESTFMVELSETADIL 1002 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK---- 780 QAT +S VILDE+GRGT+T DG++IA A ++Y+ R L TH+ L+ +++ Sbjct: 1003 KQATPRSLVILDELGRGTSTHDGVAIAQAVLDYMVRNLRSLTLFITHYQNLSSMAREFPG 1062 Query: 781 -SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 L+ H + + I FL++V G+A SYG+ V +LA +P++V+ A Sbjct: 1063 GELRNVHMKFTESGMDGQDITFLYEVGEGVAHRSYGLNVARLANVPDSVLEVA 1115 >gi|50290307|ref|XP_447585.1| hypothetical protein [Candida glabrata CBS 138] gi|49526895|emb|CAG60522.1| unnamed protein product [Candida glabrata] Length = 957 Score = 248 bits (632), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 225/806 (27%), Positives = 390/806 (48%), Gaps = 108/806 (13%) Query: 98 LIKIGHRIAICEQIESPLEAKKRGN----KSLVRRNVVRLVTPGTLTEDQLLSPTDSNYL 153 L+ +G+++ I ++ +++ GN L+ N+ + +L Q +P D++ + Sbjct: 99 LLDVGNKVEIYDRSWKLIKSASPGNIEQVSDLLNLNIDASIVIASLKIQQ--NPKDAHVI 156 Query: 154 MAVARIRTE-WAIAWIDISTGIFKISTSNHDRLISDIMRIDPREII---FSEKELSHAEY 209 + + I T + I +DI I + L S ++++ RE + S+ ++ E Sbjct: 157 LGLTFIDTSNYKIGMMDI------IDNEAYSNLESFLIQLGIRECLVPDLSQNGSTNPEL 210 Query: 210 K---SLFETLGNVAVAQPNVFFDHSISESRIADYY-NITTVDTFGSFSQVEKTAAAAAIS 265 K ++ + G+V PN F + E +A N T+ + SQ+ A A ++ Sbjct: 211 KKITNVIDRCGSVVTIVPNSEFSNKDVEVDLAKLLGNDLTLTLPQNVSQLALGACNALLN 270 Query: 266 YIKKTQMVNKPTIGYPE--REDIQSTLFIDSAARSNLEI----------------LRTLS 307 Y++ + + +G E + ++S + +DS+A L + + + Sbjct: 271 YLQ--LLSEQEMLGKYELIQHSLESIMKLDSSAIKALNLFPQNNATFFTPMQSGTVGSNG 328 Query: 308 GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQ-K 366 G++ SL + ++ T +G RL E + PLTD + I R + + F I L +Q + Sbjct: 329 GTKVASLFQLLNNCKTNSGVRLLNEWLKQPLTDFSGIQVRHNLVEFLIDQLELRQILQTE 388 Query: 367 ILKSSPDVPRSLSRLKIGRGEPKDIAVIRD---GIRSGINILNLFLKNDLP--------- 414 L PD+ R + +L G +D+ + + INI+ FL++D+ Sbjct: 389 YLPGVPDIRRLVKKLN-KNGTLEDVLKVYQFSLKVPDIINIIESFLEDDITTTDIKELVR 447 Query: 415 ----EELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFL-RDGADASLDETRSLRD 469 + L+ +E LKK + ++ T+ DL ++ + F+ R + L + R Sbjct: 448 KTWCDPLKEFMEPLKKFDEMVQTTV------DLDAYEENNEFMIRVEFNEELAKVREQLT 501 Query: 470 QSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHR 526 + I ++ L+ AE+ K LK+++++ G+ + +T + A K L + ++I Sbjct: 502 AMRDEINAIHLEAAEDLGFDPNKKLKLENHHIHGWCMRLTRNDA----KALRNHKQYIEL 557 Query: 527 QTMSNLTRFTTLELIDLENRIT------NATNSALLIELESFEILSNAIIEQSESLDNAS 580 T+ F+T ++ ++ S+L+ E+ S + I E+ S Sbjct: 558 STVKAGIFFSTRKMKEIAQETVVLQKDYERLQSSLVKEIVSITLTYTPIFEK------LS 611 Query: 581 QVIAIIDI--SIALAILAKEQNYCRPII-----DNSTNFIVKDGRHPIVEKTLKQQSSKP 633 VIA +D+ S A A Y RP + D T + + RHP++E Q Sbjct: 612 LVIAHLDVLCSFAHASSYAPIPYVRPTMHPLSSDRRTKLM--NSRHPVLE----VQDDVT 665 Query: 634 FIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIV 693 FIAND D++ K+ + ++TGPNMGGKST++RQ +I +MAQ+G +VP A I IV Sbjct: 666 FIANDVDMA----KDVSEFQIITGPNMGGKSTYIRQVGVITLMAQIGCFVPCDNAEISIV 721 Query: 694 DKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWA 753 D + RVG+ D+ G STFMVEM+ETASIL AT+ S +I+DE+GRGT+T DG +AWA Sbjct: 722 DAILCRVGAGDSQLKGVSTFMVEMLETASILKNATSNSLIIVDELGRGTSTYDGFGLAWA 781 Query: 754 TIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL--QVSDSNEG-----IIFLHKVI 806 E++ + RC L ATHFHELT+LS+ L N + + +S + I L+KV Sbjct: 782 IAEHIAKEIRCFALFATHFHELTNLSEQLPNVKNMHVIAHIDESEKALNSNDITLLYKVE 841 Query: 807 PGIADHSYGIQVGKLAGLPNTVISRA 832 PGI+D S+GI V ++ P ++S A Sbjct: 842 PGISDRSFGIHVAEVVQFPKKIVSMA 867 >gi|170100210|ref|XP_001881323.1| predicted protein [Laccaria bicolor S238N-H82] gi|164644002|gb|EDR08253.1| predicted protein [Laccaria bicolor S238N-H82] Length = 1291 Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 246/887 (27%), Positives = 411/887 (46%), Gaps = 95/887 (10%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 K TP Q+ EIK + D+++F++ G F+EL+ DDA + + + LT R K + Sbjct: 373 KDFTPFETQFWEIKQNHYDTILFFQKGKFFELYEDDARVGHQVFDLKLTSRVK-----MS 427 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR-----GNKS-------LVRRNV 130 M GVP + N + K + G+++ EQ E+ L A+ R G S +VRR + Sbjct: 428 MVGVPEMSFNFWAAKFLGKGYKVGRVEQAETALGAEMRMAATKGKASEDKSKDKIVRREL 487 Query: 131 VRLVTPGTLTEDQLLSPTDSNYLMAVARIRTE-----WAIAWIDISTGIFKISTSNHD-- 183 ++ T GTL + +LL+ + + +++ +E + I ++ ST F +S+ D Sbjct: 488 NKVYTNGTLVDPELLTDEQAGHCISICEEGSEPSNNKFGICVLECSTSQFNLSSFEDDVC 547 Query: 184 --RLISDIMRIDPREIIFSEKELSHAEYK---------SLFETLGNV-------AVAQPN 225 +L + + +I P+E+++ + LS A + L+ L +V + + Sbjct: 548 RTKLETLLRQIRPKELVYKKGTLSVATQRLLKSILPPACLWTGLRSVEGFNYEATLQEIK 607 Query: 226 VFF-----------DHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQM-- 272 F D S+ S + D + G S +E A + I Y+++ + Sbjct: 608 ALFPPEEDDNMDDTDESLLPSSVPDCIR----EMGGDQSAIE--ALGSMIWYLRQLNIDK 661 Query: 273 ----VNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGR 328 + + P + TL D +++EIL G+ + SLL + IT G R Sbjct: 662 DILSMKNFNVYDPMKRGRGLTL--DGQTLAHIEILLNNEGTEDGSLLTLLRRCITPFGKR 719 Query: 329 LFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEP 388 LF + PL+D + IN R + +++P + K PD+ R +SR+ Sbjct: 720 LFRIWLCMPLSDISAINAR-KVVQDILKHPTFEASFTGVAKGLPDLERIVSRIHAKNCRI 778 Query: 389 KDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLE--KTLSSMLSDDLPTF 446 KD + ++ + + + + L+ P L K + SM PT Sbjct: 779 KDFLKVLSAFKTMNKGFSKLADESEDFDSKTILGLLRNAPDLLPNIKNVQSMYE---PTE 835 Query: 447 KRDGGFL--RDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIE 504 +++ L + G DA DE + ++ + + K+ + IK L+ H++ I Sbjct: 836 EKEADELVPQKGKDARYDEIVAEIEELEEGLEDHLKKFQKSLGIK-LEYWHSHVGNKEIY 894 Query: 505 VTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA-TNSALLIELESFE 563 + + ASV KK+ KD T + TR+ L ++ A N I+ F Sbjct: 895 LMETPASV-KKEKVPKDWSKSGGTKAK-TRYVVGSLQKTVRQLKEARENRNTAIKAFKFR 952 Query: 564 ILSNAIIEQSESLDNASQVIAIID--ISIALAILAKEQNYCRP-IIDNSTNFI-VKDGRH 619 + ++ L A +V A +D S+A + A + CRP ++ F+ + RH Sbjct: 953 LFEEFDTDRVLWL-RAIRVFAELDCLFSLAKSSAAIGEPSCRPEFVEGDAAFVDFEQLRH 1011 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P + + K FI ND L + GK+ LLTGPNM GKST +R A+ VIMAQ+ Sbjct: 1012 PTL---CLSTNLKSFIPNDVKLG----GDEGKIALLTGPNMAGKSTVMRMTAVGVIMAQL 1064 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 G VPA+ A + VD + +R+G+ DN+ S STF VE+ E IL AT +S VILDE+G Sbjct: 1065 GMLVPAARAKLCPVDSIITRMGAYDNMFSNASTFKVELDECCKILRDATPKSLVILDELG 1124 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTD---LSKSLKRFHNATLQVSDSN 796 RGT+T DG++IA A + L ATH+ LTD +++ H +T+ V + Sbjct: 1125 RGTSTFDGMAIAAAVLHQLATHTLPLSFFATHYSSLTDDFAYHPNIRNMHMSTI-VDEEK 1183 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY 843 ++F+ K++ G+A+ S+G V LAG+P V+ RA I KTF + + Sbjct: 1184 RDLVFMFKLVEGVAESSFGTHVANLAGVPLPVVERADVISKTFAQQF 1230 >gi|302309404|ref|NP_986782.2| AGR116Wp [Ashbya gossypii ATCC 10895] gi|299788343|gb|AAS54606.2| AGR116Wp [Ashbya gossypii ATCC 10895] Length = 1167 Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 231/902 (25%), Positives = 420/902 (46%), Gaps = 134/902 (14%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP +QY +IKS D +VF++ G F+EL+ DA LA++ + + G+ ++ + G Sbjct: 241 TPFEKQYWQIKSKMWDCIVFFKKGKFFELYEKDAHLANQLFDLKIAGGGR---ANMQLAG 297 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR-GNKSLVRRNVVRLVTPGTLTEDQL 144 +P + +++ + I+ G+++A +Q ES L + R GNK +V R + +++ GTLT+ ++ Sbjct: 298 IPEMSFDYWASQFIQHGYKVAKVDQKESMLAKEMREGNKGIVERELQCVLSGGTLTDLKM 357 Query: 145 LSPTDSNYLMAV--------ARIRTE------------WAIAWIDISTGIFKI----STS 180 L S Y +++ A R E + A+ID +TG + S Sbjct: 358 LHSDQSTYCLSIHEAPLALYAMERGEAVPPEAQQQGRLFGTAFIDTATGRICLLEFEDDS 417 Query: 181 NHDRLISDIMRIDPREIIFSEKELSHAEYKSL-FETLGNVAVAQPNVFFDHSISESRIAD 239 +L + + ++ P+E++ ++ LS +K + F + QP+ F++ S A+ Sbjct: 418 ECTQLDTLMAQVRPKEVVMEKRNLSVIAHKIVKFNS-------QPDCIFNYRTS----AE 466 Query: 240 YYNIT----TVDTFGSFS-----------------QVEKTAAAAAISYIKKTQMVNKP-T 277 +Y+ V G F+ +V +A +SY++ ++ + Sbjct: 467 FYDYARTFDEVSNGGYFAGMDSWPAILKQYYDQGKKVGFSAFGGLLSYLQWLKLDKSLLS 526 Query: 278 IGYPERED---IQSTLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAER 333 +G E + Q++L +D NLEI + G+ + +L K ++ +IT G R Sbjct: 527 MGMVEEYNPLKAQTSLVLDGITLQNLEIFANSFDGTDKGTLFKLVNRAITPMGKRQMRTW 586 Query: 334 IASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS----PDVPRSLSRLKIGRGEPK 389 + PL I RLDS++ + PI+ +L+SS PD+ R L+R+ G K Sbjct: 587 VMHPLLRKEHIEERLDSVDQLLNE----MPIRDLLESSLTGLPDLERLLARVHSGNLPIK 642 Query: 390 DIAVIRDGIRSGINI------------LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSS 437 D + G + + + L+ FL +D+P L+ VE L ++ ++ Sbjct: 643 DFDKVICGFENIVRLISSLNEYELSGSLSRFL-HDIPSTLKSDVESWTTL---YDRNMAV 698 Query: 438 MLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN 497 +P + F D SL + R+L ++ +++ +Y K ++ K + Sbjct: 699 SEGKVVPNAGVEPDF-----DVSLSKMRALEEELDAVLS----EYKRSFKCSKIQYKDSG 749 Query: 498 NLGYFIEVTSSSASVLKKDL------ESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 Y IE+ S A + + +S R+ + + L R + E +L + Sbjct: 750 KELYTIELPISIAKSVPSNWTQLGANKSTKRY-YSPKVQKLAR-SMAEARELHKILEEGL 807 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP----IID 607 L + + + S +++ N ++++ S +L A CRP ID Sbjct: 808 KGRLYQKFD--QNFSTTWFPTIKAISNIDCILSLARTSESLGFPA-----CRPNFKDEID 860 Query: 608 NSTN------FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 +T K+ RHP + + FI ND L K++ ++ LLTG N Sbjct: 861 PTTGHKLNGYLSFKELRHPCYNAGV--NGATEFIPNDVHLG----KSTAQIALLTGANAA 914 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKST LR + VIMAQ+G YVP A + +D++ +R+G+ DN+ G+STF VE+ ET Sbjct: 915 GKSTILRMTCIAVIMAQLGCYVPCEDAELSPMDRIMTRLGANDNIMQGKSTFFVELSETR 974 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTD---L 778 IL+ ATN++ ++LDE+GRG ++ DG +IA + ++ + G ATH+ L Sbjct: 975 KILDMATNRTLIVLDELGRGGSSSDGFAIAEGVLHHISTHVQSLGFFATHYGTLGQSFTH 1034 Query: 779 SKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKT 838 +K A L V + ++ + FL+K+I G ++ S+G+ V + G+P +V+ A ++ Sbjct: 1035 HPMVKPLQMAIL-VDEGSKKVTFLYKLIEGQSEGSFGMHVAAMCGIPRSVVENAERAAES 1093 Query: 839 FE 840 FE Sbjct: 1094 FE 1095 >gi|325090698|gb|EGC44008.1| DNA mismatch repair protein [Ajellomyces capsulatus H88] Length = 1166 Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 243/893 (27%), Positives = 426/893 (47%), Gaps = 116/893 (12%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK---------- 75 TPM RQ I+IK + D+L+ +G + F +DA +A++ L I GK Sbjct: 253 TPMERQIIDIKKKHMDTLLVVEVGYKFRFFGEDARVAAKELSIVCIP-GKLRFDEHPSEA 311 Query: 76 HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLV 134 HL + +PVH + ++++L+ G+++ + Q+E + L+A + R + L Sbjct: 312 HLTR-FASASIPVHRLHVHVKRLVAAGYKVGVVRQLETAALKAAGENRNAPFVRKLTNLY 370 Query: 135 TPGTLTED----------QLLSPTDSNYLMAVARIRTEWAIAWID---ISTGIFKISTSN 181 T GT +D + T + YL+ + A W + + GI + + Sbjct: 371 TKGTYIDDVEGLEESSGNSGSASTSTGYLLCMTESN---AKGWGNDEKVHVGIVAVQPAT 427 Query: 182 ----HDRLISDIMR---------IDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFF 228 HD MR I P E + E+S A K + +++ ++ NVF Sbjct: 428 GDVIHDDFEDGFMRSEIEMRLLHIAPCEFLIV-GEMSKATEK----LVQHLSGSKTNVFG 482 Query: 229 D----HSISESRIADYYNITTVDTF--GSFSQVEKTAAAAAISYIKKT-QMVNKPTI--- 278 D +S+S+ A + + V +F G + T AA + ++K ++ TI Sbjct: 483 DKVRVERVSKSKTAAAESHSHVSSFYAGRMNAKGTTGDVAASNLLEKVLKLPEDVTICLS 542 Query: 279 ------------------GYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTID 319 Y + +S + ++ +NLEI + + + + SL T+D Sbjct: 543 SMIKHMSEFGLEYVFDLTKYFQPFSARSHMLLNGNTLTNLEIYQNQTDHTSKGSLFWTLD 602 Query: 320 YSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP---ILINPIQKIL-KSSPDVP 375 + T G RL + + PL D T++ R+ ++ +Q+P + I ++ +L K D+ Sbjct: 603 RTKTRFGQRLLRKWVGRPLLDKTELEERVSAVEE-LQDPSKTVQIERLKGLLSKIRADLE 661 Query: 376 RSLSRLKIGRG-EPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 +SL R+ GR P+ + V++ ++L DL + LP + Sbjct: 662 KSLIRIYYGRCTRPELLTVLQTLQLIADEYVHLKSPADLGFSSPTITTAIAALPAIRDDV 721 Query: 435 LSSMLSDDLPTFKRDGG--FLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK--- 489 ++ + + K+D F R+ ++ET + +S IA +Q + E + Sbjct: 722 VTYLNKINAEAAKKDDKYCFFRE-----VEETDEI-TESNLGIADVQHRLQEHCAVAAEI 775 Query: 490 --NLKIKHNNNLG--YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 K+++ G Y IEV +S ++ K + + R I ++RF T E++ Sbjct: 776 LGKKKVQYTTVAGIEYLIEVENSPYNL--KKVPASWRKI--SGTKKVSRFHTPEVVQY-M 830 Query: 546 RITNATNSALLIELE-SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP 604 R + AL + +F L I + +S + +A +D ++LA +A + Y +P Sbjct: 831 RERDQYKEALAAACDKAFHALLADISTKYQSFRDFILALATLDCLLSLANIASQPGYIKP 890 Query: 605 IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 + T V+ GRHP+VE+ L ++ ND +L + + L+TGPNMGGKS Sbjct: 891 AYTDKTRISVQRGRHPMVEQLLLDT----YVPNDIELHT----DETRALLVTGPNMGGKS 942 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 +++RQ ALI IM Q+GSYVPA A +G++D +++R+G+ DN+ +G STFMVE+ ETA IL Sbjct: 943 SYVRQVALISIMGQIGSYVPADSATLGMLDAVYTRMGAFDNMLAGESTFMVELSETADIL 1002 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR 784 QAT +S VILDE+GRGT+T DG++IA A ++Y+ R L TH+ L+ +++ + Sbjct: 1003 KQATPRSLVILDELGRGTSTHDGVAIAQAVLDYMVRNLRSLTLFITHYQNLSSMAREFPK 1062 Query: 785 --FHNATLQVSDS---NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 N ++ ++S + I FL++V G+A SYG+ V +LA +P++V+ A Sbjct: 1063 GELRNVHMKFTESGMDGQDITFLYEVGEGVAHRSYGLNVARLANVPDSVLEVA 1115 >gi|156031007|ref|XP_001584829.1| hypothetical protein SS1G_14284 [Sclerotinia sclerotiorum 1980] gi|154700675|gb|EDO00414.1| hypothetical protein SS1G_14284 [Sclerotinia sclerotiorum 1980 UF-70] Length = 985 Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 124/261 (47%), Positives = 174/261 (66%), Gaps = 12/261 (4%) Query: 582 VIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDL 641 V+ IDI+ + A LA E+ + RPI++ S+ + GRHP VE L+++ + FI+NDC + Sbjct: 725 VLDEIDIACSFATLADERGWTRPILNTSSAHKIISGRHPTVETGLEEEG-RSFISNDCLV 783 Query: 642 SCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVG 701 + + WL+TGPNM GKSTFLRQNALI ++AQ+GSYVPA YA +GIVD +FSRVG Sbjct: 784 G-----DVHRAWLITGPNMAGKSTFLRQNALITVLAQVGSYVPAEYAELGIVDHIFSRVG 838 Query: 702 SADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHET 761 SADNL +STFMVEM+E+A IL AT++SFVI+DEIGRGT DG+++A+A + +L+ Sbjct: 839 SADNLYQDQSTFMVEMLESAMILKNATSRSFVIMDEIGRGTTPTDGVAVAFACLHHLYHV 898 Query: 762 NRCRGLLATHFHELTDLSKS----LKRFHNATLQV--SDSNEGIIFLHKVIPGIADHSYG 815 N+CR L ATHFH L DL + F+ ++ D + +++K+ GI S+ Sbjct: 899 NKCRALFATHFHALVDLIEEGDMDAMGFYCTDVEEDGGDVDGAFRYMYKLKEGINKQSHA 958 Query: 816 IQVGKLAGLPNTVISRAYDIL 836 ++V KLAGLP I A +L Sbjct: 959 LKVAKLAGLPREAIEVARQVL 979 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 96/369 (26%), Positives = 170/369 (46%), Gaps = 47/369 (12%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 + +V R+G FYEL+F+ A+ + LG+ + ++ + G + M G P H + Y++ L++ Sbjct: 149 NCVVVTRVGGFYELYFEHAVEYAPLLGLKIAQKKTNAGP-VSMAGFPFHQLDRYLKILVQ 207 Query: 101 -IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARI 159 + +AI E+ L K + + R V R+VTPGTL ++ + P +NY++A+ Sbjct: 208 DLNRYVAISEEFPHDLSEKVKSGGLMHDRRVSRIVTPGTLIDEGFMDPLSNNYVLAIHVQ 267 Query: 160 RTEWA-------------IAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSH 206 + E A +AW+D+STG F S+ +L S + R+ PREI+ +E E+ Sbjct: 268 QDETAEAVEHESHHKSIGLAWLDLSTGHFFTQQSSLLQLPSFLARVAPREIVLAE-EMQS 326 Query: 207 AEYKSLFETLGN----VAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAA 262 + LF L + + P+ S + + ++ D +FS+ E +A + Sbjct: 327 FKSHQLFTILTDEHHIITYVTPSGVKPISEWTPMLESAVSPSSAD---AFSEEEVSAGSC 383 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI 322 + Y++ + P R+ + + ID LEI +T +K +S Sbjct: 384 LLQYVETRLQSTNMKLQPPVRQ--LNVMGIDKNTMRALEIKKT---------IKDDTFS- 431 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 ASP T IN+RLD + + ++ L + +LK S D R L + Sbjct: 432 ------------ASPSTSLDVINSRLDVVTYMLEVEPLRERMITLLKRSHDSHRLLQKFA 479 Query: 383 IGRGEPKDI 391 GRG+ D+ Sbjct: 480 FGRGDGDDL 488 >gi|154275824|ref|XP_001538757.1| hypothetical protein HCAG_06362 [Ajellomyces capsulatus NAm1] gi|150413830|gb|EDN09195.1| hypothetical protein HCAG_06362 [Ajellomyces capsulatus NAm1] Length = 1132 Score = 247 bits (630), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 233/865 (26%), Positives = 413/865 (47%), Gaps = 94/865 (10%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK---------- 75 TPM RQ I+IK + D+L+ +G + F +DA +A++ L I GK Sbjct: 253 TPMERQIIDIKKKHMDTLLVVEVGYKFRFFGEDARVAAKELSIVCIP-GKLRFDEHPSEA 311 Query: 76 HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLV 134 HL + +PVH + ++++L++ G+++ + Q+E + L+A + R + L Sbjct: 312 HLSR-FASASIPVHRLHVHVKRLVEAGYKVGVVRQLETAALKAAGENRNAPFVRKLTNLY 370 Query: 135 TPGTLTED----------QLLSPTDSNYLMAVARIRTEWAIAWID---ISTGIFKISTSN 181 T GT +D + T + YL+ +A A W + + GI + + Sbjct: 371 TKGTYIDDVEGLEESSGNSGSASTSTGYLLCMAESN---AKGWGNDEKVHVGIVAVQPAT 427 Query: 182 HDRLISD-------------IMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFF 228 D + D ++ I P E + E+S A K + G+ A+ Sbjct: 428 GDVIYDDFEDGFMRSEIEMRLLHIAPCEFLIV-GEMSKATEKLVQHLSGSRMNAKGTT-- 484 Query: 229 DHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQS 288 ++ S + + D S + K + + Y+ +P +S Sbjct: 485 -GDVAASNLLEKVLTLPEDVTICLSSMIKHMSEFGLEYVFDLTKYFQPF-------SARS 536 Query: 289 TLFIDSAARSNLEILRTLSG-SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTR 347 + ++ +NLEI + + + + SL T+D + T G RL + + PL D T++ R Sbjct: 537 HMLLNGNTLTNLEIYQNQTDHTSKGSLFWTLDRTKTRFGQRLLRKWVGRPLLDKTELEER 596 Query: 348 LDSINFFIQNP---ILINPIQKIL-KSSPDVPRSLSRLKIGRG-EPKDIAVIRDGIRSGI 402 + ++ +Q+P + I ++ +L K D+ +SL R+ GR P+ + V++ Sbjct: 597 VSAVEE-LQDPSKTVQIERLKGLLSKIRADLEKSLIRIYYGRCTRPELLTVLQTLQLIAD 655 Query: 403 NILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGG--FLRDGADAS 460 ++L DL + LP + ++ + + K+D F R+ Sbjct: 656 EYVHLKSPADLGFSSPTITTAIAALPAIRDDVVTYLNKINEEAAKKDDKYCFFRE----- 710 Query: 461 LDETRSLRDQSKRIIASLQLKYAEETKIK-----NLKIKHNNNLG--YFIEVTSSSASVL 513 ++ET + +S IA +Q + E + K+++ G Y IEV +S ++ Sbjct: 711 VEETDEI-TESNLGIADVQHRLQEHCAVAAEILGKKKVQYTTVAGIEYLIEVENSPYNL- 768 Query: 514 KKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE-SFEILSNAIIEQ 572 K + + R I ++RF T E++ R + AL + +F L I + Sbjct: 769 -KKVPASWRKI--SGTKKVSRFHTPEVVQY-MRERDQYKEALAAACDKAFHALLADISTK 824 Query: 573 SESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSK 632 +S + +A +D ++LA +A + Y +P + T V+ GRHP+VE+ L Sbjct: 825 YQSFRDCILALATLDCLLSLANIASQPGYIKPAYTDKTRISVQRGRHPMVEQLLLDT--- 881 Query: 633 PFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGI 692 ++ ND +L + + L+TGPNMGGKS+++RQ ALI IM Q+GSYVPA A +G+ Sbjct: 882 -YVPNDIELHT----DETRALLVTGPNMGGKSSYVRQVALISIMGQIGSYVPADSATLGM 936 Query: 693 VDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAW 752 +D +++R+G+ DN+ +G STFMVE+ ETA IL QAT +S VILDE+GRGT+T DG++IA Sbjct: 937 LDAVYTRMGAFDNMLAGESTFMVELSETADILKQATPRSLVILDELGRGTSTHDGVAIAQ 996 Query: 753 ATIEYLHETNRCRGLLATHFHELTDLSKSLKR--FHNATLQVSDS---NEGIIFLHKVIP 807 A ++Y+ R L TH+ L+ +++ + N ++ ++S + I FL++V Sbjct: 997 AVLDYMVRNLRSLTLFITHYQNLSSMAREFPKGELRNVHMKFTESGMDGQDITFLYEVGE 1056 Query: 808 GIADHSYGIQVGKLAGLPNTVISRA 832 G+A SYG+ V +LA +P++V+ A Sbjct: 1057 GVAHRSYGLNVARLANVPDSVLEVA 1081 >gi|330859889|emb|CBX70220.1| hypothetical protein YEW_GS29110 [Yersinia enterocolitica W22703] Length = 297 Score = 247 bits (630), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 138/307 (44%), Positives = 190/307 (61%), Gaps = 16/307 (5%) Query: 592 LAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGK 651 LA A+ +Y P++ + + GRHP+VE+ L S+PFI+N LS + Sbjct: 4 LAERAETLSYNCPVLSDKPGIKITGGRHPVVEQVL----SEPFISNPLTLSPQR-----R 54 Query: 652 LWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRS 711 + ++TGPNMGGKST++RQ ALIV++A MGSYVPA A IG VD++F+RVG+AD+LASGRS Sbjct: 55 MLIITGPNMGGKSTYMRQTALIVLLAHMGSYVPADQATIGPVDRIFTRVGAADDLASGRS 114 Query: 712 TFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATH 771 TFMVEM ETA+IL+ AT QS V++DEIGRGT+T DGLS+AWA E L + L ATH Sbjct: 115 TFMVEMTETANILHNATEQSLVLMDEIGRGTSTYDGLSLAWACAENLASRIKAMTLFATH 174 Query: 772 FHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISR 831 + ELT L + ++ N L + E I F+H V G A SYG+ V LAG+P VI R Sbjct: 175 YFELTTLPEKMEGVVNVHLDALEHGETIAFMHSVQDGAASKSYGLAVAALAGVPRDVIKR 234 Query: 832 AYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTAL 891 A LK E L +N ++ ++ L++ VE ++ L+ D +SP AL Sbjct: 235 ARQKLKELESL-SNNAAASKIDGSQLTL------LNEEVSPAVEALESLDPDSLSPRQAL 287 Query: 892 KTLYAVK 898 + +Y +K Sbjct: 288 EWIYRLK 294 >gi|258564442|ref|XP_002582966.1| hypothetical protein UREG_07739 [Uncinocarpus reesii 1704] gi|237908473|gb|EEP82874.1| hypothetical protein UREG_07739 [Uncinocarpus reesii 1704] Length = 1123 Score = 247 bits (630), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 238/891 (26%), Positives = 416/891 (46%), Gaps = 111/891 (12%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK---------- 75 TP+ +Q I+IK+ + D+L+ +G + F +DA +A++ L I GK Sbjct: 213 TPLEKQVIDIKNNHKDTLLVVEVGYKFRFFGEDARIAAKELSIVCIP-GKMRFDEHPSEA 271 Query: 76 HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESP-LEAKKRGNKSLVRRNVVRLV 134 HL + +PVH + ++++L++ GH++ + Q+E+ L+A + R + L Sbjct: 272 HLNR-FASASIPVHRLHVHVKRLVRAGHKVGVVRQLETAALKAAGDNRNAPFERKLTNLY 330 Query: 135 TPGTLTED-----------QLLSPTDSNYLMAVARIRTEWAIAWID---ISTGIFKI--S 178 T GT +D + + YL+ + A W + + GI + + Sbjct: 331 TKGTYIDDTEELEGLNAPGANNAAPATGYLLCMTESN---AKGWGNNEKVQVGIVAVQPA 387 Query: 179 TSN--HDRLISDIMR--IDPR--EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFD--- 229 T N HD MR I+ R I E L K+ + + +++ ++ NVF D Sbjct: 388 TGNIIHDSFEDGFMRTEIETRLLHIAPCEFLLVGNVTKATDKLVQHLSGSKMNVFGDKVR 447 Query: 230 -HSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDI-- 286 +S+ + A + V +F A I++ ++ + + + PE I Sbjct: 448 VERVSKPKTAGAESHNHVSSF-----YAGRMKATGITHDERASTLLEKVLSLPEDVTICL 502 Query: 287 ---------------------------QSTLFIDSAARSNLEILRTLSG-SREQSLLKTI 318 +S + ++ +NLEI + + + SL ++ Sbjct: 503 SAMIKHLTEYKLENVFDLTKYFQSFSARSHMLLNGNTLTNLEIYHNQTDHTSKGSLFWSL 562 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL--INPIQKIL-KSSPDVP 375 D + T G RL + + PL D ++ R+ ++ + + ++ +L K D+ Sbjct: 563 DRTKTKFGQRLLRKWVGRPLLDKKELEDRVTAVTELKDSDSTPRVGRLKTLLSKVKTDLE 622 Query: 376 RSLSRLKIGRG-EPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 ++L R+ G+ P+ + V+ ++ D E + LP L+ Sbjct: 623 KNLLRIYYGKCTRPELLTVLHTLQLIATEFAHIKSPADAGFTSSTINEAIATLPVVLDDV 682 Query: 435 LSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQ-----LKYAEETKIK 489 S + +L K D F L+ET + +Q K I S++ + A + Sbjct: 683 NSYLNKINLHAAKTDDKFT---FFQELEETDEITEQ-KLGIGSVEHELEEYRTAAAEILG 738 Query: 490 NLKIKHNNNLG--YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 K+ ++ G Y IEV +SS + K + + R I ++RF E++ L R Sbjct: 739 KKKVHYSTTAGIEYLIEVENSSYQL--KKIPASWRKI--SGTKKVSRFHPPEVVSL-MRQ 793 Query: 548 TNATNSALLIELE-SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 + AL + +F L I + + + Q +A +D ++LA +A + Y RP Sbjct: 794 RDQHKEALAAACDKAFISLLADISSKYQPFRDCIQALATLDCLMSLAAIAAQPGYSRPTY 853 Query: 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTF 666 + T V++GRHP+VE+ L ++ ND +LS N + L+TGPNMGGKS++ Sbjct: 854 TDETRISVREGRHPMVEQLLLD----AYVPNDIELST----NETRALLITGPNMGGKSSY 905 Query: 667 LRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQ 726 +RQ ALI IM Q+GSYVPA A +G++D +++R+G+ DN+ +G STFMVE+ ET+ IL Q Sbjct: 906 VRQVALIAIMGQIGSYVPAESATLGMLDAVYTRMGAFDNMLAGESTFMVELSETSDILKQ 965 Query: 727 ATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS----- 781 AT +S VILDE+GRGT+T DG++IA A ++Y+ R L TH+ L+ L+++ Sbjct: 966 ATPRSLVILDELGRGTSTHDGVAIAQAVLDYMVRNIRSLTLFITHYQNLSSLARTYPNGE 1025 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 L+ H + + + I FL++V G+A SYG+ V +LA +P++VI A Sbjct: 1026 LRNVHMKFTEAGNDGQDITFLYEVGEGVAHRSYGLNVARLANVPSSVIDVA 1076 >gi|24664545|ref|NP_648755.1| Msh6 [Drosophila melanogaster] gi|13124364|sp|Q9VUM0|MSH6_DROME RecName: Full=Probable DNA mismatch repair protein Msh6 gi|10727920|gb|AAF49656.2| Msh6 [Drosophila melanogaster] gi|211938707|gb|ACJ13250.1| LD20722p [Drosophila melanogaster] Length = 1190 Score = 247 bits (630), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 250/939 (26%), Positives = 424/939 (45%), Gaps = 158/939 (16%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 E+ L +P +RQ+ +KS N D ++F+++G FYEL+ DA + LG T ++ Sbjct: 255 EKFLNGLSPGVRQWWVLKSDNYDCVLFFKVGKFYELYHMDADVGVNELGFT------YMR 308 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNK-------SLVRRNVV 131 + G P + + L+ G ++A EQ E+P +R + +V R + Sbjct: 309 GEFAHSGFPEISFDKMSTILVDRGFKVARVEQTETPDMMTERCKRIKATKFDKVVAREIC 368 Query: 132 RLVTPGTL---TEDQLLSPTDSNYLMAVAR----IRTEWAIAWIDISTGIFKIST----S 180 ++ GT ++ ++ NY++A+ + + + +ID S G F + Sbjct: 369 QITNRGTQVFGSQCKIGPNHQPNYMLAIVEKDEGTCSRYGVCFIDTSIGDFHLGEFEDDK 428 Query: 181 NHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRI--- 237 N RL++ + P + + LS + + LG + H+ S + Sbjct: 429 NCSRLLTLVSHHMPVLFLNEKSALSQRTQQIVRTVLGGILKEPVPGNGKHACSAEKTLKL 488 Query: 238 -------------------------ADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQM 272 D+ +T D + ++ A I +I K ++ Sbjct: 489 LAERYYAGPGSDDNWPLVLRTMQSDMDHLGLTPNDNY----KLALKALGQCIFFIHKCKL 544 Query: 273 VNK--PTIGY-----PE-----REDIQSTL-----FIDSAARSNLEILRTLSGSREQSLL 315 K P Y P+ + + STL +D+ SNL I+ E SLL Sbjct: 545 EPKVLPMARYQLYVPPDQLADAKPAVASTLRRSHMVLDATTLSNLRII-----GEEHSLL 599 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 T+D+ T G RL + +P D + I R D+I I+ P + ++ +L PD Sbjct: 600 STLDHCCTKFGKRLLHHWLCAPSCDVSVIKERQDAIGELIRMPTELQEVRALLAPMPDFE 659 Query: 376 RSLSRLKI-GRGE------PKDIAVI-------RDGIRSGINILNLFLKNDL---PEELR 418 R+L+++ + G + P A++ + ++ + +L F NDL P Sbjct: 660 RNLAQIHLFGNKQIKQMDHPDSRAILFEEKLYNKQKLQGFMAVLKGF--NDLTKLPTMFH 717 Query: 419 GA----VEKLKKLPQSLEK--TLSSMLSDDLPTFKRDG----GFL--RDGADASLDETR- 465 ++++ +LP+S LS L F D G + + G DA D Sbjct: 718 QCKTTLLKRITQLPESGGSFPDLSKELQYFATAFDHDAAAKTGVIAPQAGMDAEYDAAMD 777 Query: 466 SLRDQSKRIIASLQLKYAEETKIKNLKIKH--NNNLGYFIEVTSSSASVLKKDL----ES 519 S+ + KR+ L E+ + +I + ++ Y ++V S AS K ++ Sbjct: 778 SIGEVEKRLKTYL----VEQERHFGCRITYFGSDKKRYQLDVPESHASKANKSYTLEGQT 833 Query: 520 KDRFIHRQTMSNLTRFTTLELIDLENRITNA--TNSALLIELES--FEILSNAIIEQSES 575 K + R R+TT E L + +A T + +L +L FE SN + + Sbjct: 834 KGKKPSR-------RYTTAETRALLKDMQHAEDTRNMVLKDLARRLFEKFSNHYDQWKQC 886 Query: 576 LDNASQVIAIIDISIALAILAKEQNY-CRP--IIDNSTNFI-VKDGRHPIVEKTLKQQSS 631 +D +A +D+ +LA A +Q C P + D FI +++G HP ++ Sbjct: 887 ID----CVANLDVLGSLAEYAGQQMVICVPELVSDADQPFIQLEEGYHPCA-------NA 935 Query: 632 KPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIG 691 +I N +L ++ L LLTGPNMGGKST +R+ L+VIMAQ+G+++PA+ + Sbjct: 936 STYIPNGLELGTASE---APLSLLTGPNMGGKSTLMREVGLLVIMAQIGAHIPAASCRLS 992 Query: 692 IVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIA 751 +VD++F+R+G+ D++ +G STF+VE+ ET+ IL AT S V+LDE+GRGTAT DG +IA Sbjct: 993 LVDRIFTRLGAQDDILAGHSTFLVELNETSLILKHATCHSLVLLDELGRGTATYDGTAIA 1052 Query: 752 WATIEYLHETNRCRGLLATHFHELTDLSKSLKRF---HNATLQVSDSN-----EGIIFLH 803 + + +L +CR L +TH+H L D + KR H A + ++ N E + FL+ Sbjct: 1053 ASVVNFLANL-KCRTLFSTHYHNLIDFFHNDKRITLGHMACMVENEDNADPTQETVTFLY 1111 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 K G SYG KLAG+P +I RAY++ K E + Sbjct: 1112 KYTAGACPKSYGFNAAKLAGMPQGIIKRAYELSKKVEAI 1150 >gi|169603207|ref|XP_001795025.1| hypothetical protein SNOG_04612 [Phaeosphaeria nodorum SN15] gi|160706348|gb|EAT88372.2| hypothetical protein SNOG_04612 [Phaeosphaeria nodorum SN15] Length = 879 Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 118/260 (45%), Positives = 174/260 (66%), Gaps = 7/260 (2%) Query: 565 LSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEK 624 L ++ L + V+ +D++ A A+LA E+N+ RP++ + + + GRHP+VE Sbjct: 616 LREGVVRNLVKLRRNATVLDELDVACAFAMLAIEKNFVRPMLSSEASHNIVGGRHPVVEA 675 Query: 625 TLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684 L Q + F NDC L ++WL+TGPNM GKST+LRQNALI I+AQ GS+VP Sbjct: 676 GLNDQG-RQFAPNDCLLG-----EQERIWLITGPNMAGKSTYLRQNALISILAQTGSFVP 729 Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744 A YA +G+VDK+FSRVGSADNL +STFMVEM+ETA IL +AT +SFVI+DE+GRGT Sbjct: 730 AEYAEVGLVDKIFSRVGSADNLYLDQSTFMVEMLETAQILKEATPRSFVIMDEVGRGTTP 789 Query: 745 LDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG-IIFLH 803 DG+++++A + +L+ N+CR L ATHFH LTD++KS K+ V + +G ++H Sbjct: 790 EDGIAVSYACLHHLYHVNQCRTLFATHFHALTDMTKSFKKLGCYCNDVLEEPDGKFSYVH 849 Query: 804 KVIPGIADHSYGIQVGKLAG 823 ++ G+ S+ ++V ++AG Sbjct: 850 RLRKGVNRESHALKVARVAG 869 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 90/381 (23%), Positives = 165/381 (43%), Gaps = 63/381 (16%) Query: 84 CGVPVHTANHYIQKLIK-IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 G P + + Y++ L++ + +AI ++ + + +G R+ V R++TPGTL ++ Sbjct: 55 AGFPAYQLDRYLKILVQDLNKHVAISDEFLNDAPSTAKGAPQYTRK-VSRIITPGTLIDE 113 Query: 143 QLLSPTDSNYLMAVA--------------------------RIRTEWAIAWIDISTGIFK 176 + P ++NYL+++ RTE +AWID+S+G F Sbjct: 114 HFMDPWENNYLLSIHVDPEVLVKEKAVTESPGSSSVSSVLNLPRTEVGLAWIDLSSGDFL 173 Query: 177 ISTSNHDRLISDIMRIDPREIIFSE--KELSHAEYKSLFETLGNVAVAQPNVFFDHSISE 234 +++ L S + RI PREI+ +E ++ S+ + G+V F + S Sbjct: 174 TQSTDIASLPSAVARIKPREIVLDSIFQEAGYSRMVSILQEDGHVI-----TFQEQSEKP 228 Query: 235 SRIADYYNI--TTVDTFGS--FSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTL 290 + D+ + VD F + FS E A + Y+K + ++ + P R + Sbjct: 229 LTVTDWVPMLEDVVDDFDTSKFSPSEIAAGGPLLHYVKYQLLGSRTRLQAPVRHQADEHM 288 Query: 291 FIDSAARSNLEILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLD 349 ID + LEI T+ G+ E SLL ++ ++T +G RL + RL Sbjct: 289 SIDKNSLRALEIRSTIRDGAYEGSLLHSLKKTVTKSGTRLLTQ--------------RLY 334 Query: 350 SINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFL 409 + IQ P L + +L + D R +++ GRG+ D+ + I + +I+ + Sbjct: 335 LVEEMIQYPQLRQDVVALLGRTFDSLRLVTKFTYGRGDADDLMELSKTIATTSDIIGI-- 392 Query: 410 KNDLPEELRGAVEKLKKLPQS 430 LRG K +P + Sbjct: 393 -------LRGHAGSRKAVPDA 406 >gi|239614918|gb|EEQ91905.1| DNA mismatch repair protein Msh3 [Ajellomyces dermatitidis ER-3] Length = 1162 Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 243/893 (27%), Positives = 429/893 (48%), Gaps = 116/893 (12%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK---------- 75 TPM RQ I+IK + D+++ +G + F +DA +A++ L I GK Sbjct: 249 TPMERQIIDIKKNHMDTVLVVEVGYKFRFFGEDARIAAKELSIVCIP-GKLRFDEHPSEA 307 Query: 76 HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLV 134 HL + +PVH + ++++L+ G+++ + Q+E + L+A + R + L Sbjct: 308 HLSR-FASASIPVHRLHVHVKRLVAAGYKVGVVRQLETAALKAAGDNRNAPFVRKLTNLY 366 Query: 135 TPGTLTED--QLLSPTDSN--------YLMAVARIRTEWAIAWIDISTGIFKISTSNHDR 184 T GT +D L P+ S+ YL+ + + + GI + + D Sbjct: 367 TKGTYIDDVEGLEGPSVSSGSASTSTGYLLCMTESNAKGCGNDEKVHVGIVAVQPATGDV 426 Query: 185 LISD-------------IMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFD-- 229 + D ++ I P E + E+S A K + G ++ NVF D Sbjct: 427 IYDDFEDGFMRSEIETRLLHIAPCEFLIV-GEMSKATEKLVQHLSG----SKTNVFGDKV 481 Query: 230 --HSISESRIADYYNITTVDTFGSFSQVEKTAA--AAAISYIKKT-QMVNKPTI------ 278 +S+S+IA + + V +F + K A AAA + ++K ++ TI Sbjct: 482 RVERVSKSKIAAAESHSHVSSFYAGRMKAKGAVGDAAANNLLEKVLKLPEDVTICLSSMI 541 Query: 279 ---------------GYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQSLLKTIDYSI 322 Y + +S + ++ +NLEI + + + + SL T+D + Sbjct: 542 KHMSEYGLEYIFDLTKYFQPFSARSHMLLNGNTLTNLEIYQNQTEHTSKGSLFWTLDRTK 601 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP---ILINPIQKIL-KSSPDVPRSL 378 T G RL + + PL D +++ R+ ++ +Q+P + I ++ +L K D+ +SL Sbjct: 602 TRFGQRLLRKWVGRPLLDKSELEERVAAVEE-LQDPSKTVQIERLKGLLSKIKADLEKSL 660 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK----LPQSLEKT 434 R+ GR ++ + +++ I + ++ PE+L + + + LP + Sbjct: 661 IRIYYGRCTRPELLTV---LQTLQLIADEYVHLKSPEDLGFSSPTINRAIAALPAIRKDV 717 Query: 435 LSSMLSDDLPTFKRDGG--FLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK--- 489 ++ + + K+D F R+ +ET + +S IA +Q + E + Sbjct: 718 VTYLNKINAQAAKKDDKYCFFREA-----EETDEI-TESNLGIADVQHRLKEHCAVAAEI 771 Query: 490 --NLKIKHNNNLG--YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 K+++ G Y IEV +S ++ K + + R I ++RF T E++ Sbjct: 772 LGKKKVQYTTVAGIEYLIEVENSPYNL--KKVPASWRKI--SGTKKVSRFHTPEVVQY-M 826 Query: 546 RITNATNSALLIELE-SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP 604 R + AL + +F L I + +S + +A +D ++LA +A + Y +P Sbjct: 827 RERDQYKEALAAACDKAFHALLADISTKYQSFRDCIVALATLDCLLSLANIASQPGYVKP 886 Query: 605 IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 + T V+ GRHP+VE+ L ++ ND +L N + L+TGPNMGGKS Sbjct: 887 TYTDETRISVQRGRHPMVEQLLLDS----YVPNDIELHT----NKTRALLVTGPNMGGKS 938 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 +++RQ ALI IM Q+GSYVPA A +G++D +++R+G+ DN+ +G STFMVE+ ETA IL Sbjct: 939 SYVRQVALICIMGQIGSYVPAESATLGMLDAVYTRMGAFDNMLAGESTFMVELSETADIL 998 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR 784 QAT +S VILDE+GRGT+T DG++IA A ++Y+ R L TH+ L+ L++ + Sbjct: 999 KQATPRSLVILDELGRGTSTHDGVAIAQAVLDYMVRNLRSLTLFITHYQNLSSLAREFPK 1058 Query: 785 --FHNATLQVSDS---NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 N ++ ++S I FL++V G+A SYG+ V +LA +P +V+ A Sbjct: 1059 GELRNVHMKFTESGMDGRDITFLYEVGEGVAHRSYGLNVARLAHVPTSVLDVA 1111 >gi|327352357|gb|EGE81214.1| DNA mismatch repair protein Msh3 [Ajellomyces dermatitidis ATCC 18188] Length = 1162 Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 243/893 (27%), Positives = 429/893 (48%), Gaps = 116/893 (12%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK---------- 75 TPM RQ I+IK + D+++ +G + F +DA +A++ L I GK Sbjct: 249 TPMERQIIDIKKNHMDTVLVVEVGYKFRFFGEDARIAAKELSIVCIP-GKLRFDEHPSEA 307 Query: 76 HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLV 134 HL + +PVH + ++++L+ G+++ + Q+E + L+A + R + L Sbjct: 308 HLSR-FASASIPVHRLHVHVKRLVAAGYKVGVVRQLETAALKAAGDNRNAPFVRKLTNLY 366 Query: 135 TPGTLTED--QLLSPTDSN--------YLMAVARIRTEWAIAWIDISTGIFKISTSNHDR 184 T GT +D L P+ S+ YL+ + + + GI + + D Sbjct: 367 TKGTYIDDVEGLEGPSVSSGSASTSTGYLLCMTESNAKGCGNDEKVHVGIVAVQPATGDV 426 Query: 185 LISD-------------IMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFD-- 229 + D ++ I P E + E+S A K + G ++ NVF D Sbjct: 427 IYDDFEDGFMRSEIETRLLHIAPCEFLIV-GEMSKATEKLVQHLSG----SKTNVFGDKV 481 Query: 230 --HSISESRIADYYNITTVDTFGSFSQVEKTAA--AAAISYIKKT-QMVNKPTI------ 278 +S+S+IA + + V +F + K A AAA + ++K ++ TI Sbjct: 482 RVERVSKSKIAAAESHSHVSSFYAGRMKAKGAVGDAAANNLLEKVLKLPEDVTICLSSMI 541 Query: 279 ---------------GYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQSLLKTIDYSI 322 Y + +S + ++ +NLEI + + + + SL T+D + Sbjct: 542 KHMSEYGLEYIFDLTKYFQPFSARSHMLLNGNTLTNLEIYQNQTEHTSKGSLFWTLDRTK 601 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP---ILINPIQKIL-KSSPDVPRSL 378 T G RL + + PL D +++ R+ ++ +Q+P + I ++ +L K D+ +SL Sbjct: 602 TRFGQRLLRKWVGRPLLDKSELEERVAAVEE-LQDPSKTVQIERLKGLLSKIKADLEKSL 660 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK----LPQSLEKT 434 R+ GR ++ + +++ I + ++ PE+L + + + LP + Sbjct: 661 IRIYYGRCTRPELLTV---LQTLQLIADEYVHLKSPEDLGFSSPTINRAVAALPAIRKDV 717 Query: 435 LSSMLSDDLPTFKRDGG--FLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK--- 489 ++ + + K+D F R+ +ET + +S IA +Q + E + Sbjct: 718 VTYLNKINAQAAKKDDKYCFFREA-----EETDEI-TESNLGIADVQHRLKEHCAVAAEI 771 Query: 490 --NLKIKHNNNLG--YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 K+++ G Y IEV +S ++ K + + R I ++RF T E++ Sbjct: 772 LGKKKVQYTTVAGIEYLIEVENSPYNL--KKVPASWRKI--SGTKKVSRFHTPEVVQY-M 826 Query: 546 RITNATNSALLIELE-SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP 604 R + AL + +F L I + +S + +A +D ++LA +A + Y +P Sbjct: 827 RERDQYKEALAAACDKAFHALLADISTKYQSFRDCIVALATLDCLLSLANIASQPGYVKP 886 Query: 605 IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 + T V+ GRHP+VE+ L ++ ND +L N + L+TGPNMGGKS Sbjct: 887 TYTDETRISVQRGRHPMVEQLLLDS----YVPNDIELHT----NKTRALLVTGPNMGGKS 938 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 +++RQ ALI IM Q+GSYVPA A +G++D +++R+G+ DN+ +G STFMVE+ ETA IL Sbjct: 939 SYVRQVALICIMGQIGSYVPAESATLGMLDAVYTRMGAFDNMLAGESTFMVELSETADIL 998 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR 784 QAT +S VILDE+GRGT+T DG++IA A ++Y+ R L TH+ L+ L++ + Sbjct: 999 KQATPRSLVILDELGRGTSTHDGVAIAQAVLDYMVRNLRSLTLFITHYQNLSSLAREFPK 1058 Query: 785 --FHNATLQVSDS---NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 N ++ ++S I FL++V G+A SYG+ V +LA +P +V+ A Sbjct: 1059 GELRNVHMKFTESGMDGRDITFLYEVGEGVAHRSYGLNVARLAHVPTSVLDVA 1111 >gi|297834760|ref|XP_002885262.1| hypothetical protein ARALYDRAFT_479358 [Arabidopsis lyrata subsp. lyrata] gi|297331102|gb|EFH61521.1| hypothetical protein ARALYDRAFT_479358 [Arabidopsis lyrata subsp. lyrata] Length = 937 Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 237/799 (29%), Positives = 386/799 (48%), Gaps = 74/799 (9%) Query: 160 RTEWAIAWIDISTGIFKIST----SNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFET 215 R +A++D++ I ++ S L S ++ + +E IF + E KSL+++ Sbjct: 155 RCVIGMAYVDLTRRILGLAEFLDDSRFTNLESSLIALGAKECIFPAESGKSNECKSLYDS 214 Query: 216 LGNVAVA----QPNVFFDHSI-SESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKT 270 L AV + + F + S+ + NI V S + A A +S+ Sbjct: 215 LERCAVMITERKKHEFKGRDLDSDLKRLVKGNIEPVRDLVSGFDLATPALGALLSF--SE 272 Query: 271 QMVNKPTIG--YPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT-GAG 326 + N+ G R DI + +DSAA L ++ + + + + SL ++ + T G G Sbjct: 273 LLSNEDNYGNFTIRRYDIGGFMRLDSAAMRALNVMESKTDANKNFSLFGLMNRTCTAGMG 332 Query: 327 GRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRG 386 RL + PL D +I TRLD + F++ L +++ LK DV R L L+ RG Sbjct: 333 KRLLHMWLKQPLVDLNEIKTRLDIVQCFVEEAGLRQDLRQHLKRISDVERLLRSLERRRG 392 Query: 387 EPKDIAVIRDGIRSGINILNLFLKNDLPE---ELRGAVEK--LKKLPQ-SLEKTLSSMLS 440 + I + +S I + F+K + + E + + LKKL S + L + Sbjct: 393 GLQHIIKL---YQSTIRLP--FIKTAMQQYTGEFSPLIRERYLKKLEALSDQDHLGKFI- 446 Query: 441 DDLPTFKRDGGFLRDGA---DASLDET-RSLRDQSKRI---IASLQLKYAEETKI---KN 490 DL + D L +G +S D T SL+DQ + + I L K A E + K Sbjct: 447 -DLVEYSVDLDQLENGEYMISSSYDTTLASLKDQKELLEQQIHELHKKTAIELDLQVDKA 505 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ G+ +T ++K L ++ FI +T + +FT +L L ++ + Sbjct: 506 LKLDKAAQFGHVFRITKKEEPKIRKKLTTQ--FIVLETRKDGVKFTNTKLKKLGDQYQSV 563 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKE--QNYCRPIIDN 608 + + E + + + SE + + +++ +D+ ++ A LA YCRP + + Sbjct: 564 VDDYKSCQKELVDRVVQTVTSFSEVFEELAGLLSEMDVLLSFADLAASCPTPYCRPEVTS 623 Query: 609 S--TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLW--LLTGPNMGGKS 664 S + +++ RHP VE Q FI NDC L GK W ++TGPNMGGKS Sbjct: 624 SDAGDIVLEGSRHPCVEA----QDWVNFIPNDCRLM------RGKSWFQIVTGPNMGGKS 673 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 TF+RQ +IV+MAQ+GS+VP A I I D +F+RVG+ D G STFM EM+ETASIL Sbjct: 674 TFIRQVGVIVLMAQVGSFVPCDKASISIRDCIFARVGAGDCQLRGVSTFMQEMLETASIL 733 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS--- 781 AT++S +I+DE+GRGT+T DG +AWA E+L + + L ATHFHELT L++S Sbjct: 734 KGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLVQVKKAPTLFATHFHELTALAQSNSE 793 Query: 782 -------LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYD 834 + FH + + + + L+KV PG D S+GI V + A P +V++ A + Sbjct: 794 VAGDTVGVANFH-VSAHIDTESRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVALARE 852 Query: 835 ILKTFE-----KLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLT 889 E + +N++ + E E ++ K F+++ + LD+M Sbjct: 853 KAAELEDFSPSSMIVNNEESGKRKSREDDPDEVSRGAARAHK-FLKEFAAMPLDKMELKD 911 Query: 890 ALKTLYAVKAWTLEKYSTD 908 +L+ + A+K LEK + D Sbjct: 912 SLQRVRAMKD-ELEKDAAD 929 >gi|675456|gb|AAA62406.1| Spellchecker1 [Drosophila melanogaster] Length = 913 Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 194/690 (28%), Positives = 335/690 (48%), Gaps = 45/690 (6%) Query: 185 LISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISE--SRIADYYN 242 L + ++ + P+E + E ++ K+L + G V + P D+ + + +R+ + Sbjct: 184 LEATVVLLGPKECLLPSIEGEYSAVKTLLDRNG-VMITMPKKSGDNDLLQDLNRLLRFAK 242 Query: 243 ITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKP-TIGYPE--REDIQSTLFIDSAARSN 299 D G + A+ A + IK +VN +G+ E + D+ + +DSAA + Sbjct: 243 GQQEDATGLKELQLQLASNALKTAIKYLDLVNDAGNLGHYEIKQLDLNRFVHLDSAAVAA 302 Query: 300 LEILR------TLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINF 353 L I+ ++ R QS+L +D+ T G RL + + PL +N R + + Sbjct: 303 LNIMPKPGTHPSMPSYRWQSVLGVLDHCRTPQGHRLMGQWVKQPLRSRNILNDRHNIVQC 362 Query: 354 FIQNPILINPIQ-KILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LK 410 +++P + + LK PD+ +L + +D+ I I IL + L Sbjct: 363 LLESPDTMETLSLDYLKRIPDILMLTKKLMRRKANLQDLFRIYQVILRTPKILKVLHELD 422 Query: 411 NDLPEELRGA-----VEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETR 465 N E + A ++ L L Q +E+ + D +R ++ D+ L E + Sbjct: 423 NSTIESVICAPFKSFLKDLTGLKQMVEQVV------DFEAIERGEYLVKASFDSRLMELQ 476 Query: 466 SLRDQSKRIIASLQLKYAEETKI--KN-LKIKHNNNLGYFIEVTSSSASVLKKDLESKDR 522 + + + LQ K ++E + KN +K++ LG+ +T SVL+K+ R Sbjct: 477 QMMTELYSKMEELQFKCSQELNLDGKNQVKLESVAKLGHHFRITVKDDSVLRKN--KNYR 534 Query: 523 FIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQV 582 + + RFT+ +L + + +L E + + + + L + Sbjct: 535 IV--DVIKGGVRFTSDKLEGYADEFASCRTRYEEQQLSIVEEIIHVAVGYAAPLTLLNNE 592 Query: 583 IAIIDISIALAILAKEQN--YCRPII--DNSTNFIVKDGRHPIVEKTLKQQSSKPFIAND 638 +A +D ++ AI A+ Y RP + + + +++D RHP +E Q FIAN Sbjct: 593 LAQLDCLVSFAIAARSAPTPYVRPKMLEEGARELVLEDVRHPCLE----LQEHVNFIANS 648 Query: 639 CDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFS 698 D K ++++TGPNMGGKST++R V+MA +G++VP S A I +VD + Sbjct: 649 VDFK----KEECNMFIITGPNMGGKSTYIRSVGTAVLMAHIGAFVPCSLATISMVDSILG 704 Query: 699 RVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYL 758 RVG++DN+ G STFMVEMIET+ I+ AT++S VI+DE+GRGT+T +G IAW+ E+L Sbjct: 705 RVGASDNIIKGLSTFMVEMIETSGIIRTATDKSLVIIDELGRGTSTYEGCGIAWSIAEHL 764 Query: 759 HETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQV 818 + +C L ATHFHE+T L+++L N + + L++V PG+ + S+GIQV Sbjct: 765 AKETKCFTLFATHFHEITKLAETLSTVKNCHMAAVADADDFTLLYQVRPGVMEKSFGIQV 824 Query: 819 GKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 +LA P V+ A ++ FE + QK Sbjct: 825 ARLANFPEHVVQNAQEVYNEFEDEHVDKQK 854 >gi|158291378|ref|XP_312887.4| AGAP003190-PA [Anopheles gambiae str. PEST] gi|157017747|gb|EAA08481.4| AGAP003190-PA [Anopheles gambiae str. PEST] Length = 1191 Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 246/954 (25%), Positives = 421/954 (44%), Gaps = 182/954 (19%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 L + TP MRQ+ +KS N D ++F+++G FYEL+ DA + LG + K + Sbjct: 246 LNTLTPAMRQWWILKSKNFDCVLFFKVGKFYELYHMDAEVGVTELGFSFMK------GEF 299 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGN--------KSLVRRNVVRL 133 G P + L++ G+++A EQ E+P ++R +VRR + ++ Sbjct: 300 AHSGFPEAAYDRMSTTLVEKGYKVARVEQTETPDMMQERCKVERTTSKYDKVVRREICQI 359 Query: 134 VTPGTLTEDQLLSPTDSN---YLMAVAR------IRTEWAIAWIDISTGIFKISTSNHD- 183 GT Q ++ T ++ Y++A+ + + +ID S G+F + D Sbjct: 360 TVMGTEVFGQQVTITANHQPRYMLAITESGRQGTAGCRYGVCFIDTSIGLFHLGEFEDDN 419 Query: 184 ---RLISDIMRIDPREIIFSEKELSHAEYKSLFET-LGNV------AVAQ---------- 223 RL++ + P ++ E+ + +F+T L NV A Q Sbjct: 420 QQSRLLTFLSHYPPV-LVLHERATPSEGMQRIFKTLLANVKREALTAGTQLWTGEKTLKY 478 Query: 224 -PNVFFDHSISESRIADYYNITTVDTFGSFS-------QVEKTAAAAAISYIKKT----Q 271 + S SE T +D S Q+ A + Y+++ Q Sbjct: 479 LAETVYGGSSSEGSKWPATLRTMLDETDSLGLTPKESYQLALKALGGCVWYLQRCLLDQQ 538 Query: 272 MVNKPT----IGYPEREDIQSTLF--IDSAARS------------NLEILRTLSGSREQS 313 +++ T + E + T+ ID AAR+ NL+I+ GS E S Sbjct: 539 VLSLATFEEYVPLDEHRETTETIAKRIDDAARAKRFMVLDSITLNNLKIV----GS-EGS 593 Query: 314 LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPD 373 L+ +D+ + G RL + +P +I R +++ I+N L+ +++IL PD Sbjct: 594 LVDRMDHCCSKFGKRLLYNWVCAPSCIKEEILQRQEAVTELIENVDLLQDVRQILGQLPD 653 Query: 374 VPRSLSRLK-IG---RGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 + R L+++ G R P A++ + G + F+ L+G + L LPQ Sbjct: 654 MERHLAQIHGFGLALRDHPARRAILYEEHVYGKKKMRDFIAT-----LKG-FQSLLPLPQ 707 Query: 430 SLEKTLSSML-----------SDDLPTFKRDGGFLRDGADASLDETRSLRDQS------- 471 S +L + P+ ++ F ++S D ++L+ S Sbjct: 708 MFASVHSQLLVRLTQKANSNPAGAFPSMEKQIEFF----ESSFDHEKALKSGSIVPEKGL 763 Query: 472 -----------KRIIASLQLKYAEETKIKNLKIKH--NNNLGYFIEVTSSSASVLKKDL- 517 K + A L+ AE++K +K+ N+ + +EV A D Sbjct: 764 DTEYDTIEQEIKDLNAELEAYLAEQSKFFGCTVKYFGNDKKRFQLEVPEGRAKKATGDYT 823 Query: 518 --------ESKDRFIHRQTMSNLTRFTTLE------LIDLENRITNATNSALLIELESFE 563 + RF +T L + LE L DL RI FE Sbjct: 824 LEGTKTGKNATKRFHTEETRRFLKQMMLLEDRRKSVLKDLARRI--------------FE 869 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY-CRPII------DNSTNFI-VK 615 S + +++A +D+ +LA A+ + C P++ +FI ++ Sbjct: 870 RFSR----DYDMWKGCIELVATLDVLTSLAEYARTEGLSCVPVLLSKDETIGGKSFIEIE 925 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 +G HP L ++++ FI N + N L LLTGPNMGGKST +RQ L+ + Sbjct: 926 EGIHPC----LSSEAAENFIPNGTAIGGDGKAN---LVLLTGPNMGGKSTLMRQVGLLAV 978 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 ++Q+GS +PA + ++D++F+R+G++D++ +G STF+VE+ ET++IL AT S V+L Sbjct: 979 LSQIGSRLPAEACRMTLIDRIFTRLGASDDIMAGHSTFLVELNETSAILKHATADSLVLL 1038 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRF---HNATLQV 792 DE+GRGTAT DG ++A A + +L + +CR + +TH+H L D R H A + Sbjct: 1039 DELGRGTATYDGTAVAGAVVHFLADL-KCRTMFSTHYHNLVDSFHEDPRIALGHMACMVE 1097 Query: 793 SD-----SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 ++ + E + FL++ G SYG KLAG+P +I RAY++ KT EK Sbjct: 1098 NEEGDDPTQETVTFLYRYTDGACPKSYGFNAAKLAGMPTAIIKRAYELSKTVEK 1151 >gi|309799624|ref|ZP_07693848.1| DNA mismatch repair protein MutS [Streptococcus infantis SK1302] gi|308116746|gb|EFO54198.1| DNA mismatch repair protein MutS [Streptococcus infantis SK1302] Length = 329 Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 129/329 (39%), Positives = 192/329 (58%), Gaps = 18/329 (5%) Query: 574 ESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKP 633 + L +Q IA +D+ LA++A+ Q+ RP + ++ GRH +VEK + Q+ Sbjct: 12 QRLQALAQGIATVDVLQGLAVVAENQHLIRPEFGQDSRIDIQKGRHAVVEKVMGAQT--- 68 Query: 634 FIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIV 693 +I N + + L+TGPNM GKST++RQ A+ +MAQ+GSYVPA AH+ I Sbjct: 69 YIPNSIQMG-----EDTSIQLITGPNMSGKSTYMRQLAMTAVMAQIGSYVPAERAHLPIF 123 Query: 694 DKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWA 753 D +F+R+G+AD+L SG+STFMVEM+E + + AT +S ++ DE+GRGTAT DG+++A A Sbjct: 124 DAIFTRIGAADDLVSGQSTFMVEMMEANNAIAHATEKSLILFDELGRGTATYDGMALAQA 183 Query: 754 TIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHS 813 IEY+HE + L ATH+HELT L SLK N + + N + FLHK+ PG AD S Sbjct: 184 IIEYIHEHVGAKTLFATHYHELTSLEASLKHLVNVHVATLEQNGQVTFLHKIEPGPADKS 243 Query: 814 YGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLS----KN 869 YGI V K+AGLP ++ RA IL E + MR QT +S Sbjct: 244 YGIHVAKIAGLPADLLKRADAILTQLESQGQESPAPMR------QTSAVTEQMSLFDAPE 297 Query: 870 DKLFVEKIKCLNLDEMSPLTALKTLYAVK 898 + + ++ +++ M+P+ A+ L +K Sbjct: 298 ENPILAELAKVDVYNMTPMQAMNLLLELK 326 >gi|169601270|ref|XP_001794057.1| hypothetical protein SNOG_03496 [Phaeosphaeria nodorum SN15] gi|160705896|gb|EAT88701.2| hypothetical protein SNOG_03496 [Phaeosphaeria nodorum SN15] Length = 1104 Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 236/878 (26%), Positives = 404/878 (46%), Gaps = 108/878 (12%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM-- 83 TPM QY++IK + D+++ +G ++ F +DA AS+ LGI GK + P Sbjct: 219 TPMELQYLDIKRKHMDTVIVMEVGYKFKFFGEDARTASKELGIVCIP-GKFRYDEHPSEA 277 Query: 84 -------CGVPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLVT 135 PVH ++++L+K H++ + Q+E + L+A + R + L T Sbjct: 278 HYDRFASASFPVHRLQVHVKRLVKANHKVGVVRQLETAALKAAGNNRNTPFVRKLTNLYT 337 Query: 136 PGTLTED--QLLSPTD----SNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISD- 188 GT +D L +PT + YL+ V + + G+ + + D + D Sbjct: 338 KGTYVDDIEGLETPTAGAQATGYLLCVTETNAKGWGTDEKVQVGLVAVQPATGDIIYDDF 397 Query: 189 ------------IMRIDPREI--------IFSEKELSHAEYKSLFETLGNVAVAQPNVFF 228 ++ I P E +F ++ S E +T+ A + + F+ Sbjct: 398 EDGFMRSEIETRLLHIAPAEFLIVASKTNVFGDR--SRVERVEKPKTMAAQAYSHISNFY 455 Query: 229 DHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTI-GYPEREDIQ 287 + S+ +D S+ +A I+Y+ + + + Y + + Sbjct: 456 ADKMKSSQEGGSEQGAILDKVHQLSEHVTICLSAMITYLSDYALEHVFDLTKYFQPFSAR 515 Query: 288 STLFIDSAARSNLEILRTLSG-SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINT 346 S + ++ S+LEI + + + + SL T+D + T G RL + + PL D ++ Sbjct: 516 SYMLLNGNTLSSLEIYQNQTDYTSKGSLFWTMDRTKTRFGQRLLRKWVGRPLIDKERLEE 575 Query: 347 RLDSINFFIQ--NPILINPIQKIL-KSSPDVPRSLSRL---KIGRGEP-KDIAVIRDGIR 399 R+ ++ + + I ++ ++ +L K D+ + L R+ K R E + +++D Sbjct: 576 RIAAVEELKEGEHTIAVDKVKFLLGKIKTDLEKVLIRIYYKKCSRPELLAALQILQD--- 632 Query: 400 SGINILNLFLKNDLPEE-------LRGAVEKLKKLPQS----LEKTLSSMLSDDLPTFKR 448 I + +L PE+ L AV + K+ + LEK + DD Sbjct: 633 ----IASQYLSAKTPEQSGFSSILLSEAVSNVPKIYEDVNSFLEKINAKAAKDD-----D 683 Query: 449 DGGFLRDGADASLDETRSLRDQSKRIIASLQ-----LKYAEETKIKNLKIKHNNNLG--Y 501 GF R+ +A ++ L K IAS++ + K+ K+ + G Y Sbjct: 684 KYGFFREEFEA--EDINDL----KLSIASVEDDLNTHRKDAAAKLGKTKVDYVTVAGIEY 737 Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMS---NLTRFTTLELIDLENRITNATNSALLIE 558 IEV +K +E K Q +S RF T E+ + S Sbjct: 738 LIEVK-------RKSVEEKKVPASWQQISATKTTLRFHTPEVKRMLQERDQYKESLAAAC 790 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGR 618 +F+ L + I + +SL + +A +D ++LA LA + Y +P +T + GR Sbjct: 791 DTAFKRLLDDIAAKYQSLRDCVSSLATLDALLSLATLANQPGYVKPTFVETTELDIVGGR 850 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP+VE+ L ++ ND LS ++ + L+TGPNMGGKS+++R ALI IM Q Sbjct: 851 HPMVEQLLLDA----YVPNDVHLSG----DATRALLVTGPNMGGKSSYVRSAALIAIMGQ 902 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +GSYVPA A +G++D +F+R+G+ DN+ G STFMVE+ ETA IL AT++S +ILDE+ Sbjct: 903 IGSYVPAESAKLGMLDAVFTRMGALDNMLKGESTFMVELNETADILRSATSRSLIILDEL 962 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDL----SKSLKRFHNATLQVSD 794 GRGT+T DG++IA A ++Y+ L TH+ L L + LK H + + D Sbjct: 963 GRGTSTFDGVAIAEAVLDYVIRDVGALTLFITHYQHLARLQDRFNGELKNVH-MSFEERD 1021 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 + ++FL++V G + SYG+ V +LA +P VI A Sbjct: 1022 GGKEVVFLYEVAEGTSHRSYGLNVARLAKVPEKVIETA 1059 >gi|254994420|ref|ZP_05276610.1| DNA mismatch repair protein MutS [Listeria monocytogenes FSL J2-064] Length = 499 Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 169/530 (31%), Positives = 280/530 (52%), Gaps = 43/530 (8%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 +E + TPM++QY+EIK D+ +F+R+GDFYE+FF+DAL AS+ L ITLT R Sbjct: 2 DEIMTEYTPMIKQYLEIKDKYQDAFLFFRLGDFYEMFFEDALNASQILEITLTGREGGTK 61 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT 138 + IPMCGVP H+A+ YI LI+ G+++AICEQ+E P + K +V+R VV+L++PGT Sbjct: 62 EKIPMCGVPYHSASGYIDTLIEKGYKVAICEQVEDP-----KTTKGMVKREVVQLISPGT 116 Query: 139 LTEDQLLSPTDSNYLMAVARIR-TEWAIAWIDISTGIFK--ISTSNHDRLISDIMRIDPR 195 + +++ L ++NY+ ++ E+ A+ D+STG K + ++ DRLI+++ + R Sbjct: 117 VMDERGLKAKENNYIASLYCYEGKEYGFAYSDLSTGELKSTVIEASEDRLINELTTLSTR 176 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQV 255 E+I S E E L +V Q + F S+ E N V S S Sbjct: 177 ELIVSSSEK---------EVLSDVMKEQLGLTF--SVHEEDTIPVENEKLVTRHMSLS-- 223 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSL 314 EK A + Y+K+TQ + + + + + +D ++ NLE+ ++ G R+ +L Sbjct: 224 EKRAIGKLLHYLKETQKRDLGHLQQAVHYETSNYMKMDYYSKRNLELAESIRGKGRQGTL 283 Query: 315 LKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSI-----NFFIQNPILINPIQKILK 369 L +D + T GGR+ + I PL D KI R + + +FF + ++ N LK Sbjct: 284 LWLLDNTQTAMGGRMLKQWIDRPLIDRKKIIDRQNDVSELMAHFFERLELVEN-----LK 338 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKL 427 + D+ R R+ G +D+ +R+ + I L + ++ EL ++ ++L Sbjct: 339 NVYDLERLAGRVAYGNVNARDLIQLRNSLYQIPRIRATLLSMSSESLTELANQLDPCEEL 398 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487 + LE+ + D P R+GG ++DG ++ LD R K IA L+ K E T Sbjct: 399 TEKLEEA----IMDSAPISIREGGIIKDGYNSQLDTYRDASRNGKTWIAELERKERELTG 454 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTT 537 IK +K+ N GY+IEVT ++ +L + R+ +QT++N R+ T Sbjct: 455 IKTMKVGFNRVFGYYIEVTRANTHLL-----PEGRYERKQTLTNAERYIT 499 >gi|114599390|ref|XP_526872.2| PREDICTED: DNA mismatch repair protein Msh3, partial [Pan troglodytes] Length = 653 Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 172/567 (30%), Positives = 304/567 (53%), Gaps = 63/567 (11%) Query: 343 KINTRLDSINFFIQN-PILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVI------- 394 +IN RLD+++ + + + I+ L+ PD+ R L + + ++ +I Sbjct: 105 EINARLDAVSEVLHSESSVFGQIENHLRKLPDIERGLCSIYHKKCSTQEFFLIVKTLYHL 164 Query: 395 RDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLR 454 + ++ I +N +++DL LR + ++ +L +E L +L++ + Sbjct: 165 KSEFQAIIPAVNSHIQSDL---LRTVILEIPELLSPVEHYLK-ILNEQAAKVGDKTELFK 220 Query: 455 DGADASLDETRSLRDQSKRIIASLQLKYAEETKI-KNLKIKHNNNLG--YFIEVTSSSAS 511 D +D L + R +D+ + +I +++ E KI KN ++ G + IE+ +S+ S Sbjct: 221 DLSDFPLIKKR--KDEIQGVIDEIRMHLQEIRKILKNPSAQYVTVSGQEFMIEIKNSAVS 278 Query: 512 VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL--ESFEILSNAI 569 + D ++ + ++RF + +++ R N L+++ E + L Sbjct: 279 CIPTD------WVKVGSTKAVSRFHSPFIVE-NYRHLNQLREQLVLDCSAEWLDFLEK-F 330 Query: 570 IEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQ 629 E SL A +A +D +LA +AK+ +YCRP + ++K+GRHP+++ L +Q Sbjct: 331 SEHYHSLCKAVHHLATVDCIFSLAKVAKQGDYCRPTVQEERKIVIKNGRHPVIDVLLGEQ 390 Query: 630 SSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAH 689 ++ N+ DLS ++S ++ ++TGPNMGGKS++++Q ALI IMAQ+GSYVPA A Sbjct: 391 DQ--YVPNNTDLS----EDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEAT 444 Query: 690 IGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLS 749 IGIVD +F+R+G+ADN+ GRSTFM E+ +TA I+ +AT+QS VILDE+GRGT+T DG++ Sbjct: 445 IGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIA 504 Query: 750 IAWATIEYLHETNRCRGLLATHFHELTDLSKS----LKRFHNATLQVSDSN--------- 796 IA+AT+EY + L TH+ + +L K+ + +H L D + Sbjct: 505 IAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMGFLVSEDESKLDPGAAEQ 564 Query: 797 --EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI--------------LKTFE 840 + + FL+++ GIA SYG+ V KLA +P ++ +A LK F Sbjct: 565 VPDFVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAAHKSKELEGLINTKRKRLKYFA 624 Query: 841 KLY-HHNQKDMRLYYPEIQTKESKNNL 866 KL+ HN +D++ + E + +E++ +L Sbjct: 625 KLWTMHNAQDLQKWTEEFKMEETQTSL 651 >gi|195590405|ref|XP_002084936.1| GD12570 [Drosophila simulans] gi|194196945|gb|EDX10521.1| GD12570 [Drosophila simulans] Length = 1192 Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 251/938 (26%), Positives = 426/938 (45%), Gaps = 156/938 (16%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 E+ L +P +RQ+ +KS N D ++F+++G FYEL+ DA + LG T ++ Sbjct: 257 EKFLNGLSPGVRQWWVLKSDNYDCVLFFKVGKFYELYHMDADVGVNELGFT------YMR 310 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNK-------SLVRRNVV 131 + G P + + L+ G ++A EQ E+P R + +V R + Sbjct: 311 GEFAHSGFPEISFDKMSTILVDRGFKVARVEQTETPDMMTDRCKRIKATKFDKVVAREIC 370 Query: 132 RLVTPGTL---TEDQLLSPTDSNYLMAVAR----IRTEWAIAWIDISTGIFKIST----S 180 ++ GT ++ ++ NY++A+ + + + +ID S G F + Sbjct: 371 QITNRGTQVFGSQCKIGPNHQPNYMLAIVEQDEGTWSRYGVCFIDTSIGDFHLGEFEDDK 430 Query: 181 NHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLG------------NVAVAQPNV-- 226 N RL++ + P + + LS + + LG N A+ + Sbjct: 431 NCSRLLTLVSHHMPVLFLNEKSALSQRTQQIVRTVLGGILKEPVPGNGKNACSAEKTLKL 490 Query: 227 ----FFDHSISESRIA----------DYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQM 272 ++ + S+ D+ +T D + ++ A I +I K ++ Sbjct: 491 LAERYYAGNGSDDNWPLVLRTMQSDMDHLGLTPDDNY----KLALKALGQCIFFIHKCKL 546 Query: 273 VNK--PTIGY-----PE-----REDIQSTL-----FIDSAARSNLEILRTLSGSREQSLL 315 K P Y P+ + + STL +D+ SNL I+ E SLL Sbjct: 547 EPKVLPMARYQLYVPPDQLADAKPAVASTLRRSHMVLDATTLSNLRII-----GEEHSLL 601 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 T+D+ T G RL + +P D I R D+I I+ P + ++ +L PD Sbjct: 602 STLDHCCTKFGKRLLHHWLCAPSCDVAVIKERQDAIGELIRMPTELQEVRALLAPMPDFE 661 Query: 376 RSLSRLKI-GRGE------PKDIAVI-------RDGIRSGINILNLFLKNDLPE------ 415 R+L+++ + G + P A++ + + + +L F NDL + Sbjct: 662 RNLAQIHLFGNKQIKQMDHPDSRAILFEEKLYNKQKLLGFMAVLKGF--NDLTKLPTMFH 719 Query: 416 ELRGA-VEKLKKLPQSLEK--TLSSMLSDDLPTFKRDG----GFL--RDGADASLDETRS 466 + + A +++L +LP+S LS L F D G + + G DA D + Sbjct: 720 QCKTALLKRLTQLPESGGSFPDLSKQLQYFATAFDHDAAAKTGVIAPQAGMDAEYD---A 776 Query: 467 LRDQSKRIIASLQLKYAEETKIKNLKIKH--NNNLGYFIEVTSSSASVLKKDL----ESK 520 D I L+ E+ + +I + ++ Y ++V S AS K ++K Sbjct: 777 AMDAIGEIEKRLKSYLVEQERHFGCRITYFGSDKKRYQLDVPESHASKANKSYTLEGQTK 836 Query: 521 DRFIHRQTMSNLTRFTTLELIDLENRITNA--TNSALLIELES--FEILSNAIIEQSESL 576 + R R+TT E L + +A T + +L +L FE SN + + + Sbjct: 837 GKKASR-------RYTTAETRALLKDMQHAEDTRNMVLKDLARRLFEKFSNHYDQWKQCI 889 Query: 577 DNASQVIAIIDISIALAILAKEQNY-CRP--IIDNSTNFI-VKDGRHPIVEKTLKQQSSK 632 D +A +D+ +LA A +Q C P + D FI +++G HP ++ Sbjct: 890 D----CVANLDVLSSLAEYAGQQMVICVPELVSDAEQPFIQLEEGYHPCA-------NAS 938 Query: 633 PFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGI 692 +I N +L ++ L LLTGPNMGGKST +R+ L+VIMAQ+G+++PA+ + + Sbjct: 939 TYIPNGLELGTASE---APLSLLTGPNMGGKSTLMREVGLLVIMAQIGAHIPAASCRLSL 995 Query: 693 VDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAW 752 VD++F+R+G+ D++ +G STF+VE+ ET+ IL AT S V+LDE+GRGTAT DG +IA Sbjct: 996 VDRIFTRLGAQDDILAGHSTFLVELNETSLILKHATCHSLVLLDELGRGTATYDGTAIAA 1055 Query: 753 ATIEYLHETNRCRGLLATHFHELTDLSKSLKRF---HNATLQVSDSN-----EGIIFLHK 804 + + +L +CR L +TH+H L D + KR H A + ++ N E + FL+K Sbjct: 1056 SVVNFLANL-KCRTLFSTHYHNLIDFFHNDKRITLGHMACMVENEDNADPTQETVTFLYK 1114 Query: 805 VIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 G SYG KLAG+P +I RAY++ K E + Sbjct: 1115 YTAGACPKSYGFNAAKLAGMPQGIIKRAYELSKKVEAI 1152 >gi|315046776|ref|XP_003172763.1| DNA mismatch repair protein Msh3 [Arthroderma gypseum CBS 118893] gi|311343149|gb|EFR02352.1| DNA mismatch repair protein Msh3 [Arthroderma gypseum CBS 118893] Length = 1140 Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 241/903 (26%), Positives = 409/903 (45%), Gaps = 140/903 (15%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK---------- 75 TPM +Q IEIK+ + D+++ ++G Y+ + +DA +A++ L I GK Sbjct: 232 TPMEKQIIEIKNKHLDAVLLIQVGYKYQFYGEDARIAAKVLSIVCIP-GKLRFDEHPSEA 290 Query: 76 HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLV 134 HL + VP+H + ++++L+ G+++ + +Q+E + L+A + R + + Sbjct: 291 HLTR-FASASVPIHRLHVHVKRLVAAGYKVGVVKQLETAALKAAGDNRNAPFVRKLTNMY 349 Query: 135 TPGTLTEDQL-------LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI--STSN--HD 183 T T ED L P+ + YL+ + + + GI + +T N HD Sbjct: 350 TKATYIEDDAELELSGSLEPS-TGYLLCLTESGAKGQGDGEKVQIGIVAVQPATGNVIHD 408 Query: 184 RLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNI 243 MR EI E L H L +G ++ A N H +S+ R+ Sbjct: 409 SFEDGFMR---SEI---ETRLLHIAPCELL-LVGELSSAT-NKLVQH-LSKGRMT----- 454 Query: 244 TTVDTFGSFSQVE-----KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDS---- 294 TFG ++E KTAAA A S+I G PE D +S+ +D Sbjct: 455 ----TFGDSVRIERREKTKTAAAEAHSHISSFYAGKMAATGAPE--DTKSSTLLDQVLQL 508 Query: 295 ---------------------------------AARS----------NLEILRTLSG-SR 310 +ARS NLEI + S S Sbjct: 509 PDDVSVCLSAMIKHLTEYGLEHVFDLTKYFQSFSARSHMMLNGNTLTNLEIYQNQSDYSS 568 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFI---QNPILINPIQKI 367 + SL +++ + T G RL + PL D K+ R +++ + ++ + N + Sbjct: 569 KGSLFWSMNRTRTKFGQRLLRRWVGRPLLDKAKLEERTEAVTELLDSDKSTLTYNLGSTL 628 Query: 368 LKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRS-GINILNLFLKNDLPEELRGAVEKLKK 426 + D+ ++L R+ G+ ++ + ++S ++ ++ D E + Sbjct: 629 TQVKIDLEKALIRVYYGKCTRPELLTMLKSMQSIAMSFAHVKSPADTGYSSPILSESIAI 688 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGG---FLRDGADASLDETR--------SLRDQSKRII 475 LP + +S + + K+D F + E R L+D K I Sbjct: 689 LPTMHDDVVSYLNKINETAAKKDDKYDFFRESEESEEIGEHRLMIGTIEYELKDHLKSIA 748 Query: 476 ASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRF 535 +L K + + + Y +EV +S ++ K + + R I ++RF Sbjct: 749 ETLGKKKVQYVSVAGID--------YLVEVENSQGAL--KKVPASWRKI--SGTKKVSRF 796 Query: 536 TTLELIDL-ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAI 594 T E++ + R + A + +LS+ I + + + Q +A ID +L++ Sbjct: 797 HTPEVVKMMRERDQQKESLAAACDTAFLRLLSD-ISTKYQLFRDCIQALATIDALHSLSV 855 Query: 595 LAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWL 654 +A + Y +P + T + GRHP+VEK L ++ ND LS + + L Sbjct: 856 IAAQPGYVKPKYTDDTIINISQGRHPMVEKILIDS----YVPNDTQLST----DETRALL 907 Query: 655 LTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFM 714 +TGPNMGGKS+++RQ ALI IM Q+GSYVPA A +G++D +++R+G+ DN+ +G STFM Sbjct: 908 VTGPNMGGKSSYVRQIALICIMGQIGSYVPAESATLGMLDAVYTRMGAFDNMLAGESTFM 967 Query: 715 VEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHE 774 VE+ ETA IL QAT +S VILDE+GRGT+T DG++IA A ++Y+ R L TH+ Sbjct: 968 VELSETADILKQATPRSLVILDELGRGTSTHDGVAIAQAVLDYMVRNLRSLTLFITHYQN 1027 Query: 775 LTDLSKS-----LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVI 829 L+ L+ + L+ H + D + I FL+++ G+A SYG+ V KLA +P ++ Sbjct: 1028 LSRLASAFPGGELRNVHMKFTETGDQGQDITFLYEIGEGVAHRSYGLNVAKLANIPAGIL 1087 Query: 830 SRA 832 A Sbjct: 1088 EVA 1090 >gi|240278385|gb|EER41891.1| DNA mismatch repair protein [Ajellomyces capsulatus H143] Length = 1114 Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 235/865 (27%), Positives = 411/865 (47%), Gaps = 105/865 (12%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK---------- 75 TPM RQ I+IK + D+L+ +G + F +DA +A++ L I GK Sbjct: 246 TPMERQIIDIKKKHMDTLLVVEVGYKFRFFGEDARVAAKELSIVCIP-GKLRFDEHPSEA 304 Query: 76 HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLV 134 HL + +PVH + ++++L+ G+++ + Q+E + L+A + R + L Sbjct: 305 HLTR-FASASIPVHRLHVHVKRLVAAGYKVGVVRQLETAALKAAGENRNAPFVRKLTNLY 363 Query: 135 TPGTLTED----------QLLSPTDSNYLMAVARIRTEWAIAWID---ISTGIFKISTSN 181 T GT +D + T + YL+ + A W + + GI + + Sbjct: 364 TKGTYIDDVEGLEESSGNSGSASTSTGYLLCMTESN---AKGWGNDEKVHVGIVAVQPAT 420 Query: 182 ----HDRLISDIMR---------IDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFF 228 HD MR I P E + E+S A K + +++ ++ NVF Sbjct: 421 GDVIHDDFEDGFMRSEIEMRLLHIAPCEFLIV-GEMSKATEK----LVQHLSGSKTNVFG 475 Query: 229 DHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQS 288 D + D S + K + + Y+ +P +S Sbjct: 476 DKVLKLPE----------DVTICLSSMIKHMSEFGLEYVFDLTKYFQPF-------SARS 518 Query: 289 TLFIDSAARSNLEILRTLSG-SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTR 347 + ++ +NLEI + + + + SL T+D + T G RL + + PL D T++ R Sbjct: 519 HMLLNGNTLTNLEIYQNQTDHTSKGSLFWTLDRTKTRFGQRLLRKWVGRPLLDKTELEER 578 Query: 348 LDSINFFIQNP---ILINPIQKIL-KSSPDVPRSLSRLKIGRG-EPKDIAVIRDGIRSGI 402 + ++ +Q+P + I ++ +L K D+ +SL R+ GR P+ + V++ Sbjct: 579 VSAVEE-LQDPSKTVQIERLKGLLSKIRADLEKSLIRIYYGRCTRPELLTVLQTLQLIAD 637 Query: 403 NILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGG--FLRDGADAS 460 ++L DL + LP + ++ + + K+D F R+ Sbjct: 638 EYVHLKSPADLGFSSPTITTAIAALPAIRDDVVTYLNKINAEAAKKDDKYCFFRE----- 692 Query: 461 LDETRSLRDQSKRIIASLQLKYAEETKIK-----NLKIKHNNNLG--YFIEVTSSSASVL 513 ++ET + +S IA +Q + E + K+++ G Y IEV +S ++ Sbjct: 693 VEETDEI-TESNLGIADVQHRLQEHCAVAAEILGKKKVQYTTVAGIEYLIEVENSPYNL- 750 Query: 514 KKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE-SFEILSNAIIEQ 572 K + + R I ++RF T E++ R + AL + +F L I + Sbjct: 751 -KKVPASWRKI--SGTKKVSRFHTPEVVQY-MRERDQYKEALAAACDKAFHALLADISTK 806 Query: 573 SESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSK 632 +S + +A +D ++LA +A + Y +P + T V+ GRHP+VE+ L Sbjct: 807 YQSFRDFILALATLDCLLSLANIASQPGYIKPAYTDKTRISVQRGRHPMVEQLLLDT--- 863 Query: 633 PFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGI 692 ++ ND +L + + L+TGPNMGGKS+++RQ ALI IM Q+GSYVPA A +G+ Sbjct: 864 -YVPNDIELHT----DETRALLVTGPNMGGKSSYVRQVALISIMGQIGSYVPADSATLGM 918 Query: 693 VDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAW 752 +D +++R+G+ DN+ +G STFMVE+ ETA IL QAT +S VILDE+GRGT+T DG++IA Sbjct: 919 LDAVYTRMGAFDNMLAGESTFMVELSETADILKQATPRSLVILDELGRGTSTHDGVAIAQ 978 Query: 753 ATIEYLHETNRCRGLLATHFHELTDLSKSLKR--FHNATLQVSDS---NEGIIFLHKVIP 807 A ++Y+ R L TH+ L+ +++ + N ++ ++S + I FL++V Sbjct: 979 AVLDYMVRNLRSLTLFITHYQNLSSMAREFPKGELRNVHMKFTESGMDGQDITFLYEVGE 1038 Query: 808 GIADHSYGIQVGKLAGLPNTVISRA 832 G+A SYG+ V +LA +P++V+ A Sbjct: 1039 GVAHRSYGLNVARLANVPDSVLEVA 1063 >gi|308198192|ref|XP_001387139.2| Mismatch repair ATPase MSH6 (MutS family) [Scheffersomyces stipitis CBS 6054] gi|149389076|gb|EAZ63116.2| Mismatch repair ATPase MSH6 (MutS family) [Pichia stipitis CBS 6054] Length = 1212 Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 232/871 (26%), Positives = 417/871 (47%), Gaps = 87/871 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 T +QY EIKS +++VF++ G FYEL+ +DA +A+ + + G+ ++ + G Sbjct: 316 TAFEKQYWEIKSKMYNTVVFFKKGKFYELYENDATIANTEFDLKIAGGGR---ANMKLAG 372 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGN----KSLVRRNVVRLVTPGTLTE 141 +P + ++ ++ I G+++A +Q+ES L + RG + +++R + ++T GTLT+ Sbjct: 373 IPEMSFEYWAKEFISHGYKVAKVDQVESLLAKEMRGGGTKEEKIIKRELTGVLTGGTLTD 432 Query: 142 DQLLSPTDSNYLMAVARIRTE-----WAIAWIDISTGIFKISTSNHD----RLISDIMRI 192 ++S + Y ++V + + + ++D +T D +L + I +I Sbjct: 433 MDMISDDMAVYCLSVKEEILDDGSKIFGVVFVDTATSEVNFIEFPDDAECTKLETLITQI 492 Query: 193 DPREIIFSEKELSHAEYKSL-FETLGNVAVAQPNV---FFDHSISESRI--ADYYNITTV 246 P+EI+ + L K L F G+ Q N F+D+ + + A YY+ + Sbjct: 493 KPKEILCMKGNLCSIAVKILKFNAQGHQIWNQLNPISEFWDYDTTCENLVSAKYYDAEDL 552 Query: 247 DTFGSFS----------QVEKTAAAAAISYIKKTQMVNK-PTIG----YPEREDIQSTLF 291 D + ++ +V A + Y++ ++ + T+G Y ++ + + Sbjct: 553 DDYSNYPPTLIDYKDNHKVAFGAFGGLLFYLRSLKLDSSIMTLGHISEYQISKNSSTHML 612 Query: 292 IDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDS 350 +D +NLEIL + G + +L K I+ + T G R + PL +IN R D+ Sbjct: 613 LDGITLNNLEILSNSFDGGDKGTLFKLINKASTPFGKRAMKSLVLHPLMKINEINERYDA 672 Query: 351 INFFIQNPI-LINPIQKILKSSPDVPRSLSRLKIGRGEPKD-IAVIR--DGIRSGINILN 406 I + + + L + +++ L S PD+ R L+R+ + KD + V+ +GI + L+ Sbjct: 673 IEYLMNEGLELRSKLEQTLTSLPDLERLLARIHSKTLKFKDFLKVVESFEGISKSLGPLH 732 Query: 407 LFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD--DLPTFKRDGGFLRDGADASLDET 464 F+ PEE + LK P+ L + L S D D K+D +G DA D++ Sbjct: 733 EFI----PEESGALFKHLKSFPRELPE-LVSQWDDAFDREEAKKDVVVPTEGVDAEFDDS 787 Query: 465 RS----LRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESK 520 + L D+ ++ + + Y K + + + Y IE+ + + D + Sbjct: 788 QCKMKILEDKLEQYLKEYKRTY----KSHEVVYRDSGKEIYLIELPNKLVKQVPNDWQQM 843 Query: 521 DRFIH-RQTMSNLTRFTTLELID---LENRITNATNSALLIELESFEILSNAIIEQSESL 576 ++ S + T EL++ L + + S + E F+ ++ SL Sbjct: 844 GSTSKVKRYWSPEVKRTARELMEQRELHKMVCESLKSRMY---ERFDAHYKTWLKAVHSL 900 Query: 577 DNASQVIAIIDISIALAILAKEQNYCRP-IIDNSTNFI-VKDGRHPIVEKTLKQQSSKPF 634 ++A+ S + + CRP +D+ I ++ RHP +S F Sbjct: 901 GKIDCILALTRTSETIGYPS-----CRPEFVDSEKGQIEFRELRHPCF------LASSDF 949 Query: 635 IANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVD 694 I ND L ++ N G LLTG N GKST +R AL VI+AQ+G +VPAS A + VD Sbjct: 950 IPNDVILGG-SEANFG---LLTGANAAGKSTLMRTTALAVILAQIGCFVPASSAKLSTVD 1005 Query: 695 KLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWAT 754 K+ +R+G+ DN+ G+STF VE+ ET I++ AT +S VILDE+GRG ++ DG +IA +T Sbjct: 1006 KIMTRLGANDNIMQGKSTFFVELSETKKIISNATTRSLVILDELGRGGSSSDGFAIAEST 1065 Query: 755 IEYLHETNRCRGLLATHFHELTDLS----KSLKRFHNATLQVSDSNEGIIFLHKVIPGIA 810 + +L + G A H+ L LS +K A + + +++ I FL+K+ G A Sbjct: 1066 LHHLATHIQPLGFFAIHYGTL-GLSFQNHPQIKPLRMAII-IDNNSRNITFLYKLEEGTA 1123 Query: 811 DHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 S+G+ V + G+ NT++ A K +E+ Sbjct: 1124 PGSFGMNVASMCGIANTIVDSAEVAAKEYEQ 1154 >gi|50554795|ref|XP_504806.1| YALI0F00154p [Yarrowia lipolytica] gi|49650676|emb|CAG77608.1| YALI0F00154p [Yarrowia lipolytica] Length = 887 Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 204/732 (27%), Positives = 361/732 (49%), Gaps = 71/732 (9%) Query: 135 TPGTLTE-DQLLSPTDSNYLMAVARIRTEW---AIAWIDISTGIFKISTSNHDRLISDI- 189 +PG L++ + L+S + +A+A ++T+ +A++D++ + +S + +S++ Sbjct: 115 SPGNLSQVEDLMSGQLNTNPVAIA-VKTQGDTVGLAFVDLNNHVLGVSEFEDNECMSNLE 173 Query: 190 ---MRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTV 246 +++D +E I S+ ++ K++ E G + +F+ + ES + + Sbjct: 174 SLLIQLDVKECITSDDKV-----KAVIERAGVSRTDAKSSWFNANEVESNLDNLLAEKLQ 228 Query: 247 DTFGSFSQVEKTAAAAA-ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT 305 T S + A I Y+ T + + + + +D++A L ++ + Sbjct: 229 PTSPELSLKNALGSLACLIKYLSLTSDASNHGAFTIKTHTLSQYMKLDASALKALHLMPS 288 Query: 306 LSGS-REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPI 364 + S + SL ++ T G R A+ + PL D +I R + + F + +L I Sbjct: 289 VKDSTKSSSLYGLLNVCKTATGSRTLAQWVKQPLMDKQEIEKRHEIVEIFTSSDLL-ESI 347 Query: 365 QKILKSSPDVPRSLSRLKIGRGEPKDIAV----------IRDGIRSGINILNLFLKNDLP 414 ++ L + PD+ R + +D+ I G+R+ + L L+ Sbjct: 348 RQNLSTIPDLNRLTRKFMRQAASLEDVVRVYQMVATLPHIASGLRAAQSEL---LEETFL 404 Query: 415 EELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRS----LRDQ 470 +L + L+K + +E T+ DL + + + L++T++ +D+ Sbjct: 405 TQLDSIITGLQKFEELVESTI------DLNSIDSHEFMINPDMEEGLNDTKARLEACQDR 458 Query: 471 SKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMS 530 K I AS+ + E K LK ++++ G+ +T + AS L+ +F T+ Sbjct: 459 MKDIFASVSDELGMEMD-KKLKFENHHVHGWSFRLTRTDASCLR----GLSKFKELATLK 513 Query: 531 NLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSES----LDNASQVIAII 586 FTT EL L N T+ + I+ L+ IIE + S L+ S V+ + Sbjct: 514 AGIIFTTNELRSLSNEFTDLSQEYKKIQAR----LAKEIIEIACSYCPLLERCSAVLGQL 569 Query: 587 DISIALAILAKEQNYCRPIIDNSTN--FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 D+ + A +A E+NY RP + +S + I+ RHP +E + FI ND L Sbjct: 570 DVLTSFASVAIERNYIRPTVVDSDDRKCILTASRHPCLE------AQDTFIPNDVHLG-- 621 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 ++S K ++TGPNMGGKSTF+RQ +IV+M Q+G +VP A I I D + +RVG+ D Sbjct: 622 --QDSKKFLVITGPNMGGKSTFIRQVGVIVLMNQIGCFVPCDRAEISIFDCILARVGAGD 679 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 + G STFM EM+ET++IL AT++S +I+DE+GRGT+T DG +AWA E++ + N C Sbjct: 680 SQLKGLSTFMSEMLETSAILKSATDKSLIIIDELGRGTSTYDGFGLAWAISEHIVKMN-C 738 Query: 765 RGLLATHFHELTDLSKS----LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGK 820 + ATHFHELT+L+K + H A V +S++ I L+KV+PG++ SYG V + Sbjct: 739 FSMFATHFHELTELAKEHPDRVDNLHVAA-HVGESSDDITLLYKVVPGVSSKSYGTHVAE 797 Query: 821 LAGLPNTVISRA 832 + P V++ A Sbjct: 798 VVKFPTKVVNMA 809 >gi|302915423|ref|XP_003051522.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256732461|gb|EEU45809.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 926 Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 251/949 (26%), Positives = 433/949 (45%), Gaps = 110/949 (11%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 E L +R + + S N D++ + GD+Y +DA+ ++ + T T + LG Sbjct: 6 ELKLDDEGGFIRFFKSLPSENDDTIRIFDRGDWYTSHGEDAMFIAKTVYKT-TSVVRQLG 64 Query: 79 KD----IPMCGVPVHTANHYIQK-LIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRL 133 ++ +P + + ++++ L+K+G RI I + + K V+ Sbjct: 65 RNDHTGLPSVTMTMTVFRQFLREALLKLGKRIEIWQSASGRMNWK-----------CVKQ 113 Query: 134 VTPGTL--TEDQLLSPTDSNYLMAVARIRTEWA------IAWIDISTGIFKISTSNHDRL 185 +PG L ED L +S ++ +I + + + + D S +S + L Sbjct: 114 ASPGNLQDVEDDLGGQIESAPMILAVKISAKASEARNIGVCFADASVRELGVSEFLDNDL 173 Query: 186 ISD----IMRIDPREIIFS------EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISES 235 S+ ++++ RE + EK+ A+ K + + G +P+ F E Sbjct: 174 YSNFEALLIQLGVRECLVQIDKSEKEKDPELAKLKKIIDNCGVAIAERPSGDFGTRDIEQ 233 Query: 236 RIADYYNITTVDTFGSFSQVE-KTAAAAAISYIKKTQMVNKPT-IGYPE--REDIQSTLF 291 +A T Q + K A +A S IK ++ P+ G + + D+ + Sbjct: 234 DLARLLKDERSATL--LPQTDLKLAMGSAASLIKYLGVLQDPSNFGQYQLYQHDLAQFMK 291 Query: 292 IDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDS 350 +D+AA L ++ GS+ S+ +++ T G RL A+ + PL +I R Sbjct: 292 LDAAALKALNLMPGPRDGSKTMSVYGVLNHCKTPVGSRLLAQWLKQPLMSKQEIEKRQQL 351 Query: 351 INFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIA-----VIR--DGIRSGI 402 + F + L +Q+ L+S PD+ R R + G+ +D+ VIR I + Sbjct: 352 VEAFYVDTELRQTLQEEHLRSIPDLYRLSKRFQRGKANLEDVVRAYQVVIRLPGFIGTFE 411 Query: 403 NILNLFLKNDLPE----ELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGAD 458 +++ K+ L E +LR + L KL +E+T+ DL R ++ D Sbjct: 412 GVMDENYKDPLDEAYTTKLRDLSDSLGKLQDMVEQTV------DLDALDRHEYIIKADFD 465 Query: 459 ASLDETRSLRDQSKRIIASLQLKYAE---ETKIKNLKIKHNNNL-GYFIEVTSSSASVLK 514 L R DQ I + L A + K + ++ N+ + G + +T A ++ Sbjct: 466 KGLRIIRKKLDQLDSDIRAEFLTSARDLGQEPDKKIFLETNHKVHGVCMRLTRQEAGCIR 525 Query: 515 KDLESKDRFIHRQTMSNLTRFTTLELI------DLENRITNATNSALLIELESFEILSNA 568 +K + T N FTT ++ D ++ N T S+L+ E+ ++ S+ Sbjct: 526 ----NKSGYQECSTQKNGVYFTTKKMQAYRREHDQLSQNYNRTQSSLVHEV--VQVASS- 578 Query: 569 IIEQSESLDNASQVIAIIDISIAL--AILAKEQNYCRPIID--NSTNFIVKDGRHPIVEK 624 L+ + V+A +D+ ++L A + ++Y RP I I+K+ RHP +E Sbjct: 579 ---YCPVLERLAGVLAHLDVIVSLGHAAVHALESYVRPKIHARGEGQTILKEARHPCME- 634 Query: 625 TLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684 Q FI ND +L+ DK+S ++TGPNMGGKST++RQ +I +MAQ+G +VP Sbjct: 635 ---LQDDVQFITNDIELT--RDKSS--FLIITGPNMGGKSTYIRQTGVIALMAQVGCFVP 687 Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744 S A + I D + +RVG++D+ G STFM EM+ETA+IL AT S +I+DE+GRGT+T Sbjct: 688 CSEAELTIYDSILARVGASDSQLKGVSTFMAEMLETANILKSATADSLIIIDELGRGTST 747 Query: 745 LDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN-----------ATLQVS 793 DG +AWA E++ + C + ATHFHELT L+ + N + + Sbjct: 748 YDGFGLAWAISEHIVKEIGCSAMFATHFHELTALADQYPQVQNLHVTAHIGGTGGAVSEA 807 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVI---SRAYDILKTFEKLYHHNQKDM 850 D+ + L+KV PG+ D S+GI V +L P+ V+ R D L+ F +D+ Sbjct: 808 DAKREVTLLYKVAPGVCDQSFGIHVAELVRFPDKVVRMAKRKADELEDFTT----KHEDL 863 Query: 851 RLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 L Y + ++ L + + +K+K N+ + ALK L A Sbjct: 864 ALQYSKEDVEQGSAMLKRVLVEWKDKVKQGNMSREEQVAALKELVGANA 912 >gi|255728741|ref|XP_002549296.1| hypothetical protein CTRG_03593 [Candida tropicalis MYA-3404] gi|240133612|gb|EER33168.1| hypothetical protein CTRG_03593 [Candida tropicalis MYA-3404] Length = 1222 Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 224/886 (25%), Positives = 405/886 (45%), Gaps = 92/886 (10%) Query: 8 PQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLG 67 PQ +S+ + E +QY IKS +++VF++ G FYEL+ +DA++A+ Sbjct: 316 PQSAWSKFTNFE----------KQYWGIKSKMWNTVVFFQKGKFYELYENDAIIANTKFD 365 Query: 68 ITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGN----K 123 + + G+ ++ + G+P + ++ ++ I G+++A +Q ES L + RG + Sbjct: 366 LKIAGGGR---ANMKLAGIPEMSFEYWAKEFISHGYKVAKVDQKESLLAKEMRGGTTKEE 422 Query: 124 SLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTE-----WAIAWIDISTGIFKIS 178 +++R + ++T GTLT+ +++ S Y +++ E + +A++D +T Sbjct: 423 KIIKRELTGILTGGTLTDLNMITNDMSTYCLSIKEEENEDGTKVFGVAFVDTATSELNFI 482 Query: 179 TSNHD----RLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVF------- 227 D +L + I ++ P+E+I + L K L A ++ ++ Sbjct: 483 ELQDDAECTKLDTLITQVKPKEVICEKGNLCQIANK----ILKFCAHSENQIWNILNPIT 538 Query: 228 ----FDHSISESRIADYYNITTVDTFGSFSQV---EKTAAAAAISYIKKTQMVNKP---- 276 +D++I E + YY +D + + ++ K A S K Sbjct: 539 EFWDYDNTIEELVKSKYYEAEDLDDYSKYPEILVTYKDNHPLAFSAFGGLLYYLKLLKLD 598 Query: 277 ----TIG----YPEREDIQSTLFIDSAARSNLEILR-TLSGSREQSLLKTIDYSITGAGG 327 ++G Y ++ + + +D +NLEIL T GS + +L K ++ + T G Sbjct: 599 SSIMSLGNIHEYQISKNANNHMILDGITLNNLEILHNTADGSDKGTLFKLLNRATTSFGK 658 Query: 328 RLFAERIASPLTDSTKINTRLDSINFFIQNPI-LINPIQKILKSSPDVPRSLSRLKIGRG 386 RL + I PL +IN R DS++FF+ + + L + IQ +L + PD+ R L+R+ Sbjct: 659 RLLQQWILHPLYKIDEINARYDSVDFFMNDGLELRSAIQDVLFTLPDLERLLARVHAKTL 718 Query: 387 EPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML-SDDLPT 445 + +D + + + I L+ LK+ E L P + + + S D Sbjct: 719 KFRDFLRVIESFEA-IAKLSTKLKDFANVECGILYNYLSSFPHEMSELIDQWEDSFDREQ 777 Query: 446 FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEV 505 K D G D DE+++L + + +Y K +++ + + Y IEV Sbjct: 778 AKSDVIIPASGVDEQFDESQTLLGDLESQLNQKLKEYKRTYKSQSICYRDSGKEIYLIEV 837 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEIL 565 L + S + R+ + E+ L ++ + + + L Sbjct: 838 PVK--------LNVPQDWQQMGATSKVKRYWSPEVKKLARKLMEQRE----LHKQVCDTL 885 Query: 566 SNAIIEQ----SESLDNASQVIAIIDISIALAILAKEQNY--CRP-IIDNSTNFI-VKDG 617 N + E+ ++ + I ID +AL ++ + CRP ID + + K+ Sbjct: 886 KNRMFEKFDAHYQTWMGVIRSIGNIDCLLALTKASESMGFPSCRPSFIDAAKGCVDFKEL 945 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP E T K FI ND L N LLTG N GKST +R AL V+++ Sbjct: 946 RHPCFEGT------KEFIPNDVQLGGSNPH----FGLLTGANAAGKSTLMRTTALAVMLS 995 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 Q+G ++PA A + VD++ +R+G+ DN+ G+STF VE+ ET IL+ AT +S VILDE Sbjct: 996 QIGCHIPAESAKLTPVDRIMTRLGANDNIMQGKSTFFVELSETKKILSNATPKSLVILDE 1055 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ--VSDS 795 +GRG ++ DG SIA + + +L + G ATH+ L K+ + + V ++ Sbjct: 1056 LGRGGSSSDGFSIAESVLHHLATHLQSLGFFATHYGTLGLSFKTHPQIKQLRMGIVVDNN 1115 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 + I FL+K+ G A S+G+ V + G+P ++ A +E+ Sbjct: 1116 SRNITFLYKLEEGTAPRSFGMNVAAMCGIPEEIVDNAERAANEYEQ 1161 >gi|195327727|ref|XP_002030569.1| GM24498 [Drosophila sechellia] gi|194119512|gb|EDW41555.1| GM24498 [Drosophila sechellia] Length = 1192 Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 251/939 (26%), Positives = 429/939 (45%), Gaps = 158/939 (16%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 E+ L +P +RQ+ +KS N D ++F+++G FYEL+ DA + LG T ++ Sbjct: 257 EKFLNGLSPGVRQWWVLKSDNYDCVLFFKVGKFYELYHMDADVGVNELGFT------YMR 310 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNK-------SLVRRNVV 131 + G P + + L+ G ++A EQ E+P R + +V R + Sbjct: 311 GEFAHSGFPEISFDKMSTILVDRGFKVARVEQTETPDMMTDRCKRIKATKFDKVVAREIC 370 Query: 132 RLVTPGTL---TEDQLLSPTDSNYLMAVAR----IRTEWAIAWIDISTGIFKIST----S 180 ++ GT ++ ++ NY++A+ + + + +ID S G F + Sbjct: 371 QITNRGTQVFGSQCKIGPNHQPNYMLAIVEQDEGTWSRYGVCFIDTSIGDFHLGEFEDDK 430 Query: 181 NHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLG------------NVAVAQPNV-- 226 N RL++ + P + + LS + L LG N A+ + Sbjct: 431 NCSRLLTLVSHHMPVLFLNEKSALSQRTQQILRTVLGGILKEPVPGNGKNACSAEKTLKL 490 Query: 227 ----FFDHSISESRIA----------DYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQM 272 ++ + S+ D+ +T D + ++ A I +I K ++ Sbjct: 491 LAERYYAGNGSDDNWPLVLRTMQSDMDHLGLTPDDNY----KLALKALGQCIFFIHKCKL 546 Query: 273 VNK--PTIGY-----PE-----REDIQSTL-----FIDSAARSNLEILRTLSGSREQSLL 315 K P Y P+ + + STL +D+ SNL I+ E SLL Sbjct: 547 EPKVLPMARYQLYVPPDQLADAKPAVASTLRRSHMVLDATTLSNLRII-----GEEHSLL 601 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 T+D+ T G RL + +P D I R D+I I+ P + ++ +L PD Sbjct: 602 STLDHCCTKFGKRLLHHWLCAPSCDVAVIKERQDAIGELIRIPTELQEVRALLAPMPDFE 661 Query: 376 RSLSRLKI-GRGE------PKDIAVI-------RDGIRSGINILNLFLKNDLPE------ 415 R+L+++ + G + P A++ + + + +L F NDL + Sbjct: 662 RNLAQIHLFGNKQIKQMDHPDSRAILFEEKLYNKQKLLGFMAVLKGF--NDLTKLPTMFH 719 Query: 416 ELRGA-VEKLKKLPQSLEK--TLSSMLSDDLPTFKRDG----GFL--RDGADASLDETR- 465 + + A +++L +LP+S LS L F D G + + G DA D Sbjct: 720 QCKTALLKRLTQLPESGGSFPDLSKQLQYFATAFDHDAAAKTGVIAPQAGMDAEYDAAMD 779 Query: 466 SLRDQSKRIIASLQLKYAEETKIKNLKIKH--NNNLGYFIEVTSSSASVLKKDL----ES 519 S+ + KR+ + L E+ + +I + ++ Y ++V + AS K ++ Sbjct: 780 SIGEIEKRLKSYL----VEQERHFGCRITYFGSDKKRYQLDVPETHASKANKSYTLEGQT 835 Query: 520 KDRFIHRQTMSNLTRFTTLELIDLENRITNA--TNSALLIELES--FEILSNAIIEQSES 575 K + R R+TT E L + +A T + +L +L FE SN + + Sbjct: 836 KGKKASR-------RYTTAETRGLLKDMQHAEDTRNMVLKDLARRLFEKFSNHYDQWKQC 888 Query: 576 LDNASQVIAIIDISIALAILAKEQNY-CRP--IIDNSTNFI-VKDGRHPIVEKTLKQQSS 631 +D ++ +D+ +LA A +Q C P + D FI +++G HP ++ Sbjct: 889 ID----CVSNLDVLSSLAEYAGQQMVICVPELVSDAEQPFIQLEEGYHPCA-------NA 937 Query: 632 KPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIG 691 +I N +L ++ L LLTGPNMGGKST +R+ L+VIMAQ+G+++PA+ + Sbjct: 938 STYIPNGLELGTASE---APLSLLTGPNMGGKSTLMREVGLLVIMAQIGAHIPAASCRLS 994 Query: 692 IVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIA 751 +VD++F+R+G+ D++ +G STF+VE+ ET+ IL AT S V+LDE+GRGTAT DG +IA Sbjct: 995 LVDRIFTRLGAQDDILAGHSTFLVELNETSLILKHATCHSLVLLDELGRGTATYDGTAIA 1054 Query: 752 WATIEYLHETNRCRGLLATHFHELTDLSKSLKRF---HNATLQVSDSN-----EGIIFLH 803 + + +L +CR L +TH+H L D + KR H A + ++ N E + FL+ Sbjct: 1055 ASVVNFLANL-KCRTLFSTHYHNLIDFFHNDKRITLGHMACMVENEDNADPTQETVTFLY 1113 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 K G SYG KLAG+P +I RAY++ K E + Sbjct: 1114 KYTAGACPKSYGFNAAKLAGMPQGIIKRAYELSKKVEAI 1152 >gi|169765552|ref|XP_001817247.1| DNA mismatch repair protein MSH3 [Aspergillus oryzae RIB40] gi|121806689|sp|Q2UT70|MSH3_ASPOR RecName: Full=DNA mismatch repair protein msh3; AltName: Full=MutS protein homolog 3 gi|83765102|dbj|BAE55245.1| unnamed protein product [Aspergillus oryzae] Length = 1111 Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 240/915 (26%), Positives = 415/915 (45%), Gaps = 134/915 (14%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK---------- 75 TPM +Q I+IK + D+++ +G + F +DA A++ L I GK Sbjct: 199 TPMEKQVIDIKRKHMDTVLVVEVGYKFRFFGEDARTAAKELNIVCIP-GKFRFDEHPSEA 257 Query: 76 HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLV 134 HL + +PVH + ++++L+ GH++ + Q+E + L+A + R + L Sbjct: 258 HLDR-FASASIPVHRLHVHVKRLVSAGHKVGVVRQMETAALKAAGDNRNAPFGRKLTNLY 316 Query: 135 TPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDP 194 T GT +D + + A T A ++ T N ++++ I+ + P Sbjct: 317 TKGTYIDDMEGLEGSTASMSATG---TSMATGYMLCITETNTKGWGNDEKVLVGIVAVQP 373 Query: 195 R--EIIFSEKELSHAEYKSLFET-LGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS 251 +I++ E E +S ET L ++A + + D S + ++ + + + FG Sbjct: 374 ATGDIVYDEFE--DGFMRSEIETRLLHLAPCEVLIVGDLSKATEKLVQHLSGNKTNAFGD 431 Query: 252 FSQVE-----KTAAAAAISYI--------KKTQMVN--------KPTIGYPEREDI---- 286 +VE KTAAA + S++ KK N + + E+ I Sbjct: 432 EIRVERAPKAKTAAAESHSHVSSFYAERMKKVNATNDVQASSLLQKVLNLSEQATICLSS 491 Query: 287 -------------------------QSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDY 320 +S + +++ ++LEI + S + SL T+D Sbjct: 492 MIKHMSEYGLEHVFQLTKYFQHFSSRSHMLLNANTLNSLEIYHNQTDHSTKGSLFWTLDR 551 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFF--IQNPILINPIQKIL-KSSPDVPRS 377 + T G R+ + + PL + + R+D++ ++ L+ ++ +L + D+ +S Sbjct: 552 TQTRFGQRMLRKWVGRPLLNKLGLEERVDAVEELKNLERVALVEQMKCLLGRIKTDLEKS 611 Query: 378 LSRLKIGRGE--------------PKDIAVIRDGIRSGIN--ILNLFLKNDLPEELRGAV 421 L R+ G+ ++ A ++ +G + +++ + + LP L V Sbjct: 612 LIRVYYGKCTRPELLTLLQTLQMIAQEFAGVQSPADTGFSSPLISKAVAS-LPTILEDVV 670 Query: 422 EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRD------GADASLDETRSLRDQSKRII 475 L K+ + + +DD F R+ + G A + R + I+ Sbjct: 671 RFLDKI------NMHAAKNDDKYEFFRESEETDEITEHKLGIGAVEHDLEEHRSTAGEIL 724 Query: 476 ASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRF 535 ++ Y I+ Y I V + S S+ K ++ ++RF Sbjct: 725 GKRKVDYVTVAGIE-----------YLIAVENKSPSIKKVPAS----WVKISGTKAVSRF 769 Query: 536 TTLELIDLENRITNATNSALLIELE-SFEILSNAIIEQSESLDNASQVIAIIDISIALAI 594 T E+I L R + AL + ++ I +S ++ Q +A +D I+LA Sbjct: 770 HTPEVIRL-LRQRDQHKEALAAGCDKAYATFLAEISASYQSFRDSVQSLATLDCLISLAT 828 Query: 595 LAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWL 654 +A + Y +P N T V GRHP+VE+ L ++ ND DL D + + L Sbjct: 829 IANQPGYVKPEYTNHTCIQVDQGRHPMVEQLLLDS----YVPNDIDL----DSDKTRALL 880 Query: 655 LTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFM 714 +TGPNMGGKS+++RQ ALI IM Q+GSYVPA A +G++D +F+R+G+ DN+ +G STFM Sbjct: 881 VTGPNMGGKSSYVRQVALIAIMGQIGSYVPARSAKLGMLDAVFTRMGAFDNMLAGESTFM 940 Query: 715 VEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHE 774 VE+ ETA IL QAT +S VILDE+GRGT+T DG++IA A ++Y+ + R L TH+ Sbjct: 941 VELSETADILKQATPRSLVILDELGRGTSTHDGVAIAQAVLDYMIRSIRSLTLFITHYQH 1000 Query: 775 LTDLSKS-----LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVI 829 L+ + S L+ H + + E I FL++V G+A SYG+ V +LA LP +I Sbjct: 1001 LSSMVHSFPDHELRNVHMRFTESGPTEEEITFLYEVREGVAHRSYGLNVARLANLPAPLI 1060 Query: 830 SRAYDILKTFEKLYH 844 A E+ H Sbjct: 1061 ELAKQKSAELEQKIH 1075 >gi|156376468|ref|XP_001630382.1| predicted protein [Nematostella vectensis] gi|156217402|gb|EDO38319.1| predicted protein [Nematostella vectensis] Length = 792 Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 184/585 (31%), Positives = 277/585 (47%), Gaps = 72/585 (12%) Query: 285 DIQSTLFIDSAARSNLEILRTL--SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDST 342 D+ + +D+AA L +L G++ L ++ T G RL A+ I PL D Sbjct: 153 DLSQYMKLDAAAVRALNLLPNPMDGGNKSMCLTGLLNKCKTPQGQRLVAQWIKQPLMDKN 212 Query: 343 KINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGI 402 KI RL+ + F+++ L +Q +K PD R + + + A ++D +R Sbjct: 213 KIEERLNIVEAFVEDTELRQTLQDEMKKFPDFSRLAKKFQ------RQKATLQDCVRVYQ 266 Query: 403 NILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD------------DLPTFKRDG 450 ++ L D+ E G KL L + L +++D DL + Sbjct: 267 SVQRLEPFADVLERYHGDHRKL--LVECFRDPLMELVADFAKFCDLVETTIDLEQVENHE 324 Query: 451 GFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK------IKNLKIKHNNNLGYFIE 504 ++ D L E R D+ I+ ++ + + K +K++ NN LGYF Sbjct: 325 YLIKATFDEGLQECREHMDE---ILEKFPVELNKAGRDLSLEPSKTIKLESNNQLGYFFR 381 Query: 505 VTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEI 564 +T VL+ N R++T+E R TN+ S L E ++ Sbjct: 382 ITRKEEKVLR----------------NNKRYSTIETRKDGVRFTNSALSQLNDEFRGYKD 425 Query: 565 LSNAIIEQ------------SESLDNASQVIAIIDISIALAILAKEQN--YCRPII---D 607 N + + SE + S VIA ID ++ A ++ Y RP I Sbjct: 426 TYNDVQGKLAAEVLKIAGGYSEPMQGLSDVIAQIDALVSFAHVSANAPIPYVRPTITPKG 485 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 + + I+ RHP +E Q + FIAND LS ++ ++TGPNMGGKST++ Sbjct: 486 SEGDIILTGSRHPCLEI----QDNVAFIANDVTLS----RDKQMFLIITGPNMGGKSTYI 537 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ +IV+MAQ+G +VP S A I I D + +RVGS D+ G STFM EM+ETASIL A Sbjct: 538 RQIGVIVLMAQLGCFVPCSTAQISITDCILARVGSGDSQLKGVSTFMSEMLETASILRTA 597 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN 787 T S +I+DE+GRGT+T DG +AWA EY+ + L ATHFHELT L+ + N Sbjct: 598 TKDSLIIIDELGRGTSTYDGFGLAWAISEYIATQIKSFCLFATHFHELTSLADEVSTVTN 657 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 + + + L+KV PG+ D S+GI V +LA P+ VI A Sbjct: 658 LHVTALTTGGTLTLLYKVKPGVCDQSFGIHVAELAHFPSDVIEFA 702 >gi|190359894|sp|Q0UXL8|MSH3_PHANO RecName: Full=DNA mismatch repair protein MSH3; AltName: Full=MutS protein homolog 3 Length = 1119 Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 242/896 (27%), Positives = 411/896 (45%), Gaps = 129/896 (14%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM-- 83 TPM QY++IK + D+++ +G ++ F +DA AS+ LGI GK + P Sbjct: 219 TPMELQYLDIKRKHMDTVIVMEVGYKFKFFGEDARTASKELGIVCIP-GKFRYDEHPSEA 277 Query: 84 -------CGVPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLVT 135 PVH ++++L+K H++ + Q+E + L+A + R + L T Sbjct: 278 HYDRFASASFPVHRLQVHVKRLVKANHKVGVVRQLETAALKAAGNNRNTPFVRKLTNLYT 337 Query: 136 PGTLTED--QLLSPTD----SNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISD- 188 GT +D L +PT + YL+ V + + G+ + + D + D Sbjct: 338 KGTYVDDIEGLETPTAGAQATGYLLCVTETNAKGWGTDEKVQVGLVAVQPATGDIIYDDF 397 Query: 189 ------------IMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISE-- 234 ++ I P E + +LS A K + +++ ++ NVF D S E Sbjct: 398 EDGFMRSEIETRLLHIAPAEFLIV-GDLSKATDK----LIHHLSASKTNVFGDRSRVERV 452 Query: 235 -----------SRIADYY-------------NITTVDTFGSFSQVEKTAAAAAISYIKKT 270 S I+++Y +D S+ +A I+Y+ Sbjct: 453 EKPKTMAAQAYSHISNFYADKMKSSQEGGSEQGAILDKVHQLSEHVTICLSAMITYLSDY 512 Query: 271 QMVNKPTI-GYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDYSITGAGGR 328 + + + Y + +S + ++ S+LEI + + + + SL T+D + T G R Sbjct: 513 ALEHVFDLTKYFQPFSARSYMLLNGNTLSSLEIYQNQTDYTSKGSLFWTMDRTKTRFGQR 572 Query: 329 LFAERIASPLTDSTKINTRLDSINFFIQ--NPILINPIQKIL-KSSPDVPRSLSRL---K 382 L + + PL D ++ R+ ++ + + I ++ ++ +L K D+ + L R+ K Sbjct: 573 LLRKWVGRPLIDKERLEERIAAVEELKEGEHTIAVDKVKFLLGKIKTDLEKVLIRIYYKK 632 Query: 383 IGRGEP-KDIAVIRDGIRSGINILNLFLKNDLPEE-------LRGAVEKLKKLPQS---- 430 R E + +++D I + +L PE+ L AV + K+ + Sbjct: 633 CSRPELLAALQILQD-------IASQYLSAKTPEQSGFSSILLSEAVSNVPKIYEDVNSF 685 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQ-----LKYAEE 485 LEK + DD GF R+ +A ++ L K IAS++ + Sbjct: 686 LEKINAKAAKDD-----DKYGFFREEFEA--EDINDL----KLSIASVEDDLNTHRKDAA 734 Query: 486 TKIKNLKIKHNNNLG--YFIEVTSSSASVLKKDLESKDRFIHRQTMS---NLTRFTTLEL 540 K+ K+ + G Y IEV +K +E K Q +S RF T E+ Sbjct: 735 AKLGKTKVDYVTVAGIEYLIEVK-------RKSVEEKKVPASWQQISATKTTLRFHTPEV 787 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 + S +F+ L + I + +SL + +A +D ++LA LA + Sbjct: 788 KRMLQERDQYKESLAAACDTAFKRLLDDIAAKYQSLRDCVSSLATLDALLSLATLANQPG 847 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 Y +P +T + GRHP+VE+ L ++ ND LS ++ + L+TGPNM Sbjct: 848 YVKPTFVETTELDIVGGRHPMVEQLLLDA----YVPNDVHLSG----DATRALLVTGPNM 899 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GGKS+++R ALI IM Q+GSYVPA A +G++D +F+R+G+ DN+ G STFMVE+ ET Sbjct: 900 GGKSSYVRSAALIAIMGQIGSYVPAESAKLGMLDAVFTRMGALDNMLKGESTFMVELNET 959 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDL-- 778 A IL AT++S +ILDE+GRGT+T DG++IA A ++Y+ L TH+ L L Sbjct: 960 ADILRSATSRSLIILDELGRGTSTFDGVAIAEAVLDYVIRDVGALTLFITHYQHLARLQD 1019 Query: 779 --SKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 + LK H + + D + ++FL++V G + SYG+ V +LA +P VI A Sbjct: 1020 RFNGELKNVH-MSFEERDGGKEVVFLYEVAEGTSHRSYGLNVARLAKVPEKVIETA 1074 >gi|308802850|ref|XP_003078738.1| DNA mismatch repair protein MSH3 (ISS) [Ostreococcus tauri] gi|116057191|emb|CAL51618.1| DNA mismatch repair protein MSH3 (ISS) [Ostreococcus tauri] Length = 1062 Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 243/894 (27%), Positives = 409/894 (45%), Gaps = 135/894 (15%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ K+ P +L+ +G + + DDA AS+ LGI + +L Sbjct: 158 TPLELSVKAFKAKYPGTLLMIEVGYKFHFYGDDARDASKTLGIFAYQSRNYL-----TAS 212 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKR---GNKS-LVRRNVVRLVTPGTLT 140 VPV N Y+++L+K G R+ + Q E + L+A GNKS L R +V L T TL Sbjct: 213 VPVVRLNVYVRRLVKAGFRVGVVRQTETAALKASGESGSGNKSGLFERQLVGLYTKATLD 272 Query: 141 EDQLLS--------PTD-----SNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRL-- 185 LS P+ SN+L+ VA R + + G+ I TS D L Sbjct: 273 AGAALSDAGDDGERPSGTQERLSNHLLCVAEER----VGGSKVRIGLAAIETSTGDVLNG 328 Query: 186 -ISDIMR----------IDPREIIFSE--KELSHAEYKSLFETLGNVAVAQPNVFFDHSI 232 +D M+ I P EI+ E E + K+L+ + + A + H Sbjct: 329 EFTDTMQRAELESRLLCISPAEIVIVEPISEQTTRLIKALYGSGADAARVE------HLT 382 Query: 233 SESRIADYYNITTVDTFGS----FSQVEKTAAAAAISYIKKTQMVN--------KPTIGY 280 ++ I +V+ G+ S + TA A Y+ + +P G Sbjct: 383 RDT-------IESVELTGAKAEQASPLVHTALRAGAKYLSDFGQADILQLDAAFRPLEGV 435 Query: 281 PEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTD 340 E + + L LE+L + +G+ + SLL ++++ T GGRL ++ PL Sbjct: 436 NEMKLSPNVL-------RQLEVLTSSAGAYKGSLLWLMNHTATAMGGRLLRHWVSHPLHS 488 Query: 341 STKINTRLDSINFF------------IQNPILINPIQKILKSSPDVPRSLSRLKIGRGEP 388 I RLD++ +N N ++ LK PD+ R L+R+ G P Sbjct: 489 KVAIERRLDAVEALRDLTSFEEGDLDKRNHSTFNGLKMQLKQLPDLDRQLARVFHGTATP 548 Query: 389 KD-IAVIRDGIRSGINILNL--FLKNDLPEELRGAVEKLKKLP----QSLEKTLSSMLSD 441 + ++ + R G N+ ++ DL L VE + + + L +T S L+ Sbjct: 549 SEFVSALTSLSRFGEACGNMREGVEGDLTSTL--LVELISAIADPSLRVLAETFMSALNL 606 Query: 442 DLPTFKRDG----GFLRDGAD--ASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 D+ + G +D + L T + + +K+ +A L + ++ I L+ Sbjct: 607 DVACVDKPSKTKIGLFKDDPERFPELSATVAAVNDAKQALADLLPELRKKLGIPRLEYTT 666 Query: 496 NNNLG---YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 +G + IEV + K + + R+ E+ + + A Sbjct: 667 VGGVGGGEWLIEVP------MDKSCPVTWIKVSSNKSKKVVRYHPPEVTEAVAALERANE 720 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP-IIDNSTN 611 ++ +++ ++ E + A+ IA +D ALAI+A+ Y RP ++D++ Sbjct: 721 RHMMSADAAWKEFLSSFRENYATFRAATSSIASLDALHALAIVARNDGYVRPELVDDTAT 780 Query: 612 FIV--KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 ++ ++GRHP+++ L F+ N DL+ + + ++TGPNMGGKS ++RQ Sbjct: 781 PVLYFEEGRHPVLDAHLLDS----FVPNGVDLAA----DRTRALVITGPNMGGKSCYIRQ 832 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 AL+ IMAQ+GS+VPA A + ++D +++R+G++DNLA G STF+ EM E ++IL T Sbjct: 833 IALLSIMAQVGSFVPAKCARLTVLDAVYTRMGASDNLAMGSSTFLEEMSEASNILEACTP 892 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 +S VI+DE+GRGT+T DG++IA AT+E+L +C L TH+ +++ ++ H A Sbjct: 893 KSLVIMDELGRGTSTHDGVAIAAATLEHLVRDAKCFTLFVTHY---PSVARDVEAKHAAN 949 Query: 790 LQ-----------VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 SD I FL+K+ PG+A S+G+ V ++AGLP VI A Sbjct: 950 CASCFTSYVELPGSSDDVPRIQFLYKITPGVAHRSFGLNVARMAGLPTEVIQSA 1003 >gi|119177119|ref|XP_001240377.1| hypothetical protein CIMG_07540 [Coccidioides immitis RS] gi|121936884|sp|Q1DQ73|MSH3_COCIM RecName: Full=DNA mismatch repair protein MSH3; AltName: Full=MutS protein homolog 3 Length = 1181 Score = 244 bits (622), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 243/894 (27%), Positives = 433/894 (48%), Gaps = 115/894 (12%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK---------- 75 TP+ +Q I+IK+ + D+++ +G + F +DA +A++ L I GK Sbjct: 271 TPLEKQVIDIKNKHKDAILVVEVGYKFRFFGEDARIAAKELSIVCIP-GKLRFDEHPSEA 329 Query: 76 HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLV 134 HL + +PVH + ++++L++ GH++ + Q+E + L+A + R + L Sbjct: 330 HLNR-FASASIPVHRLHVHVKRLVRAGHKVGVVRQLETAALKAAGDNRNAPFERKLTHLY 388 Query: 135 TPGTLTED----QLLSPTDSN-------YLMAVARIRTEWAIAWID---ISTGIFKI--S 178 T GT +D + L+ +N YL+ + A W + + GI + + Sbjct: 389 TKGTYIDDTEELEGLNAVGANSAAPATGYLLCMTESN---AKGWGNDEKVQVGILAVQPA 445 Query: 179 TSN--HDRLISDIMR---------IDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVF 227 T N HD MR I P E + ++S A K + +++ ++ NVF Sbjct: 446 TGNIIHDSFEDGFMRTEIETRLLHIAPCEFLLI-GDVSRATDK----LVQHLSGSKMNVF 500 Query: 228 FD----HSISESRIADYYNITTVDTF-------GSFSQVEKT----------------AA 260 D +S+S+ A + + V +F S +Q E+ Sbjct: 501 GDKVRVERVSKSKTAAAESHSHVSSFYAGRMKATSTTQDERARDLLDKVLNLPEDVTICL 560 Query: 261 AAAISYIKKTQMVNKPTI-GYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQSLLKTI 318 +A I ++K+ + N + Y + +S + ++ NLEI + + + + SL T+ Sbjct: 561 SAMIKHLKEYNLENVFDLTKYFQPFSARSHMLLNGNTLINLEIYQNQTEQTSKGSLFWTL 620 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL--INPIQKIL-KSSPDVP 375 D + T G RL + + PL D ++ R+ ++ + + ++ +L K D+ Sbjct: 621 DRTKTRFGQRLLRKWVGRPLLDKQELEDRVAAVTELKDSDATPRVGRLKTLLSKVKTDLE 680 Query: 376 RSLSRLKIGRG-EPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 ++L R+ G+ P+ + V++ ++ D + E + +LP L+ Sbjct: 681 KNLLRIYYGKCTRPELLTVLQTLQLIATEFSHVKSPADAGFDSPVINEAISQLPVVLDDV 740 Query: 435 LSSMLSDDLPTFKRDG--GFLRDGADASLDETRSLRDQSKRIIASLQ--LKYAEETKIKN 490 +S + +L + K D F ++ +ET + +Q K I S++ L+ T + Sbjct: 741 VSYLNKINLHSAKADDKFSFFQES-----EETDEITEQ-KLGIGSVEHDLEEYRNTAAEI 794 Query: 491 L---KIKHNNNLG--YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 L K+ + N G Y IEV +SS + K + + R I ++RF E+++L Sbjct: 795 LCKKKVCYVTNAGIEYLIEVENSSLQM--KKIPASWRKI--SGTKKVSRFHPPEVVNL-M 849 Query: 546 RITNATNSALLIELE-SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP 604 R + AL + +F L I + + + Q +A +D ++LA +A + Y RP Sbjct: 850 RERDQHKEALAAACDKAFLGLLADISTKYQPFRDCIQALATLDCFMSLAAVAAQPGYVRP 909 Query: 605 IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 + V+ GRHP+VE+ L ++ ND +L + + L+TGPNMGGKS Sbjct: 910 TYADEARISVRGGRHPMVEQLLLDT----YVPNDTELGT----DGTRALLVTGPNMGGKS 961 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 +++RQ ALI IM Q+GSYVPA A +G++D +++R+G+ DN+ +G STFMVE+ ET+ IL Sbjct: 962 SYVRQVALISIMGQIGSYVPAESATLGMLDAVYTRMGAFDNMLAGESTFMVELSETSDIL 1021 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS--- 781 QAT +S VILDE+GRGT+T DG++IA A ++Y+ R L TH+ L++L+++ Sbjct: 1022 KQATPRSLVILDELGRGTSTHDGVAIAQAVLDYMVRDIRSLTLFITHYQHLSNLARTFPN 1081 Query: 782 --LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAY 833 L+ H + + I FL++V G+A SYG+ V +LA +P++V+ AY Sbjct: 1082 GELRNVHMKFTESGKDGQDITFLYEVGEGVAHRSYGLNVARLANIPSSVLDVAY 1135 >gi|156094380|ref|XP_001613227.1| DNA repair protein [Plasmodium vivax SaI-1] gi|148802101|gb|EDL43500.1| DNA repair protein, putative [Plasmodium vivax] Length = 1289 Score = 243 bits (621), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 237/943 (25%), Positives = 415/943 (44%), Gaps = 147/943 (15%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP M+Q+ +IKS N D ++F++MG FYE+F+ DA L G+ G+ P G Sbjct: 326 TPGMQQFWKIKSKNFDKIIFFKMGRFYEIFYIDACLMHTICGLNWMG-----GEQKPHLG 380 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSL------VRRNVVRLVTPGTL 139 P + + Y +K+I GH++ + EQ+E+P E ++R ++ ++R + + T GT+ Sbjct: 381 FPEQSLHLYAKKVINSGHKVVVIEQMETPKELEQRNKETCGPKDKAIKREINEIFTKGTI 440 Query: 140 TEDQLLSPTDSNYLMAV---------------------------------ARIRTEWAIA 166 D +LS +++ YL+ + + + Sbjct: 441 LHDNMLS-SETKYLVCFHFDDIEDLDGGVVDVGVGGVGSLPGSSSQSDRSVKSKCNFGFV 499 Query: 167 WIDISTGIFKISTSNHD----RLISDIMRIDPREIIFSEKELSHAEYKSLFETLGN---- 218 DI+T + N D L + + ++ P EI+++ K + + E S+F+ + Sbjct: 500 VSDIATSYIAVGYCNDDESRIELRTILAQLCPAEILYASKNI-NKEVLSIFKNIPAEPEL 558 Query: 219 VAVAQ-PNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPT 277 AV+ PN+ S I Y+ Q A ++ +++K Sbjct: 559 TAVSSFPNII----ASLDEIRKYFETIPPSLEMHREQNSVICAFGGFIVYLRSLLLDKKI 614 Query: 278 IGYPEREDI-----QSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAE 332 + + E ++ + +D+ A +LEIL T SG + SL ++ + T G R Sbjct: 615 FRFCKIEHYDLFKRENYMVLDATALKHLEILETQSGETKNSLFDYVNKTCTNFGARNMRR 674 Query: 333 RIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIA 392 I SPL D T+IN RLD + F +N +++ I+ LK PD+ R L+++ I + + A Sbjct: 675 WICSPLLDCTRINERLDVVEFLKKNEHILSLIRLKLKKLPDIERLLNKICIQASQSERGA 734 Query: 393 VIRDGIRSG-----INILNLFLK-NDLPEELRGAVEKLKKLPQSL--------EKTLSSM 438 V D I S + LN F + + E+ + ++LP+ L K+L Sbjct: 735 VFFDNIVSTKLKEFMTFLNAFKEIGSMLIEINSIEKDEEELPKRLYEISNTPDRKSLLRK 794 Query: 439 LSDDLPTFKR-DGGFLR-------------DGADASLDETRSLRDQSKRIIASLQLKYAE 484 + P ++ FL+ +G D ++D S + + + ++ Sbjct: 795 VQGSYPHIEQITNEFLKKIEFDGDKEYKPAEGCDEAIDLINSKEKEIEGELTNILTNMKR 854 Query: 485 ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLE---SKDRFIHRQTMSNLTRFTTLELI 541 KI +LK H Y +E + K +E +K FI Q LE I Sbjct: 855 NMKISSLKYVH-AKYKYEVECPENVPKHFLKHVEITSAKKGFIRFQNDEIKQCVEMLEDI 913 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 D E + A+ F+ + + E +A ++++ +D A A +A + Sbjct: 914 DQEKK------DAI---YPFFKKMFHLFYAHYEKYVSACRLVSELDCLQAFAFVALNTPF 964 Query: 602 C--RPIID----NSTNFIVKDGRHPIVEKTLKQ--QSSKPFIANDCDLSCPNDK------ 647 RP++ N + E T +Q QSS+ ++ C + K Sbjct: 965 ALTRPVLHPMRRNGSGEGESGEESSGQEVTAEQINQSSRSAVSAVCRGGTAHGKEPFLIL 1024 Query: 648 --NSGKLWLLTGPNMGGKSTFL-----RQNALIVIMAQMG--------SYVPASYAHIG- 691 N + PN + ++ +Q+ L++ MG + + A IG Sbjct: 1025 ENNIHPVVATLMPNFISNNIYMGCEQEKQSTLLLTGPNMGGKSTLLRQTAISVILAQIGA 1084 Query: 692 ----------IVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VDK+F+R+GS+DNL G+STF+VE+ + +++L Q+T S ILDE+GRG Sbjct: 1085 FVPSTYCELTVVDKIFTRLGSSDNLFEGKSTFLVELEDISNMLKQSTKYSLAILDELGRG 1144 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN--ATLQVSDSNEGI 799 T++ DG +IA +T+E + + +CR + +TH+H L + K K+ N +L + D E I Sbjct: 1145 TSSFDGTAIALSTLEQISDVVKCRCIFSTHYHLLVEEVKHNKKISNYHMSLSIDDHQEKI 1204 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 IFL+K I G+ S+GI + KLAGLP +I A++ FE + Sbjct: 1205 IFLYKFIKGVCPKSFGIHIAKLAGLPKEIIDLAHEKSTLFENV 1247 >gi|238482111|ref|XP_002372294.1| DNA mismatch repair protein Msh3 [Aspergillus flavus NRRL3357] gi|220700344|gb|EED56682.1| DNA mismatch repair protein Msh3 [Aspergillus flavus NRRL3357] Length = 1386 Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 240/918 (26%), Positives = 416/918 (45%), Gaps = 134/918 (14%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK---------- 75 TPM +Q I+IK + D+++ +G + F +DA A++ L I GK Sbjct: 199 TPMEKQVIDIKRKHMDTVLVVEVGYKFRFFGEDARTAAKELNIVCIP-GKFRFDEHPSEA 257 Query: 76 HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLV 134 HL + +PVH + ++++L+ GH++ + Q+E + L+A + R + L Sbjct: 258 HLDR-FASASIPVHRLHVHVKRLVSAGHKVGVVRQMETAALKAAGDNRNAPFGRKLTNLY 316 Query: 135 TPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDP 194 T GT +D + + A T A ++ T N ++++ I+ + P Sbjct: 317 TKGTYIDDMEGLEGSTASMSATG---TSMATGYMLCITETNTKGWGNDEKVLVGIVAVQP 373 Query: 195 R--EIIFSEKELSHAEYKSLFET-LGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS 251 +I++ E E +S ET L ++A + + D S + ++ + + + FG Sbjct: 374 ATGDIVYDEFE--DGFMRSEIETRLLHLAPCEVLIVGDLSKATEKLVQHLSGNKTNAFGD 431 Query: 252 FSQVE-----KTAAAAAISYI--------KKTQMVN--------KPTIGYPEREDI---- 286 +VE KTAAA + S++ KK N + + E+ I Sbjct: 432 EIRVERAPKAKTAAAESHSHVSSFYAERMKKVNATNDVQASSLLQKVLNLSEQATICLSS 491 Query: 287 -------------------------QSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDY 320 +S + +++ ++LEI + S + SL T+D Sbjct: 492 MIKHMSEYGLEHVFQLTKYFQHFSSRSHMLLNANTLNSLEIYHNQTDHSTKGSLFWTLDR 551 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFF--IQNPILINPIQKIL-KSSPDVPRS 377 + T G R+ + + PL + + R+D++ ++ L+ ++ +L + D+ +S Sbjct: 552 TQTRFGQRMLRKWVGRPLLNKLGLEERVDAVEELKNLERVALVEQMKCLLGRIKTDLEKS 611 Query: 378 LSRLKIGRGE--------------PKDIAVIRDGIRSGIN--ILNLFLKNDLPEELRGAV 421 L R+ G+ ++ A ++ +G + +++ + + LP L V Sbjct: 612 LIRVYYGKCTRPELLTLLQTLQMIAQEFAGVQSPADTGFSSPLISKAVAS-LPTILEDVV 670 Query: 422 EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRD------GADASLDETRSLRDQSKRII 475 L K+ + + +DD F R+ + G A + R + I+ Sbjct: 671 RFLDKI------NMHAAKNDDKYEFFRESEETDEITEHKLGIGAVEHDLEEHRSTAGEIL 724 Query: 476 ASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRF 535 ++ Y I+ Y I V + S S+ K ++ ++RF Sbjct: 725 GKRKVDYVTVAGIE-----------YLIAVENKSPSIKKVPAS----WVKISGTKAVSRF 769 Query: 536 TTLELIDLENRITNATNSALLIELE-SFEILSNAIIEQSESLDNASQVIAIIDISIALAI 594 T E+I L R + AL + ++ I +S ++ Q +A +D I+LA Sbjct: 770 HTPEVIRLL-RQRDQHKEALAAGCDKAYATFLAEISASYQSFRDSVQSLATLDCLISLAT 828 Query: 595 LAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWL 654 +A + Y +P N T V GRHP+VE+ L ++ ND DL D + + L Sbjct: 829 IANQPGYVKPEYTNHTCIQVDQGRHPMVEQLLLDS----YVPNDIDL----DSDKTRALL 880 Query: 655 LTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFM 714 +TGPNMGGKS+++RQ ALI IM Q+GSYVPA A +G++D +F+R+G+ DN+ +G STFM Sbjct: 881 VTGPNMGGKSSYVRQVALIAIMGQIGSYVPARSAKLGMLDAVFTRMGAFDNMLAGESTFM 940 Query: 715 VEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHE 774 VE+ ETA IL QAT +S VILDE+GRGT+T DG++IA A ++Y+ + R L TH+ Sbjct: 941 VELSETADILKQATPRSLVILDELGRGTSTHDGVAIAQAVLDYMIRSIRSLTLFITHYQH 1000 Query: 775 LTDLSKS-----LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVI 829 L+ + S L+ H + + E I FL++V G+A SYG+ V +LA LP +I Sbjct: 1001 LSSMVHSFPDHELRNVHMRFTESGPTEEEITFLYEVREGVAHRSYGLNVARLANLPAPLI 1060 Query: 830 SRAYDILKTFEKLYHHNQ 847 A E+ H + Sbjct: 1061 ELAKQKSAELEQKIHRRR 1078 >gi|321459752|gb|EFX70802.1| putative MSH3, mismatch repair ATPase [Daphnia pulex] Length = 1013 Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 228/902 (25%), Positives = 408/902 (45%), Gaps = 116/902 (12%) Query: 8 PQKLYSEQIDLEE-NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCL 66 P+ + S +D +E NLK TP+ +Q + +K P+ L+ G +++F +DA A L Sbjct: 121 PKTISSSLLDHKELNLKL-TPLEQQIVALKEKYPELLLVVECGYKFQIFGEDADKAGTIL 179 Query: 67 GITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSL 125 + K+ C P+H +++KL+ G ++ I Q E + L+A + Sbjct: 180 NMATYKKNNFFS-----CSFPLHRLMVHVKKLVTHGCKVGIVRQKETTALKAVGASKHAP 234 Query: 126 VRRNVVRLVTPGTLTED---------QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFK 176 +R + + T TL D Q + +A A +T+ + A I I + Sbjct: 235 FKRELEIVYTKATLIVDDDCDGVIDVQCVDIPLCIIFVAEAYAKTDGSTAQIGILAFFTQ 294 Query: 177 ISTSNHDRLISDIMR---------IDPREIIFSEKELSH-----AEYKSLFE-TLGNVAV 221 + D D R + P EI+ ++ +++ + +L++ + G+ Sbjct: 295 DTKCIFDHFQDDCARSRLDSLLTHLQPAEIVLPDQGITNRTLDLVKQFALYKLSNGDCIR 354 Query: 222 AQPNVFFDHSISESRIADYY--NITTVDTFGSFSQVEKTAAAAAISYIKK---TQMVNKP 276 + F +I+ ++ Y + +D V A A ++K+ QMV Sbjct: 355 TEFTSHFHWAIASEMLSKVYGDDADMMDKLKDIPPVIHCCIAMAHEHLKQFKLEQMVKMI 414 Query: 277 TIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ---SLLKTIDYSITGAGGRLFAER 333 P + L +D NL ++ + + Q S+ ++ + T G RL Sbjct: 415 NDVKPYEAFDDNVLQMDGNCVRNLNLVPLTNETGPQLIGSVYHVLNQTRTKPGARLLRSW 474 Query: 334 IASPLTDSTKINTRLDSINFFI---QNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKD 390 + PL I +RL+++ FF+ ++P L P +K LKS PD+ + L+ + R +PK+ Sbjct: 475 LLRPLACRDLIESRLEAVGFFVDHFEDPELA-PFKKFLKSLPDLEKQLTAVLHSRSKPKE 533 Query: 391 IAVIRDGIRSGINILNLFL----KNDLPEE----LRGAVEKLKKLP-----------QSL 431 + + IL + L KN LP + AV+ LK P S Sbjct: 534 FHGLCKSWEQ-LTILCVELQSHYKNVLPLSVALLINSAVDSLKMAPFYAEQLSDVAISSG 592 Query: 432 EKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET----- 486 EKT +D P K L + + + ++L+ + I L L Y + Sbjct: 593 EKTKLFNRLEDYPEMK----MLFEKIQQTESKIQALKPSICKSIGLLALNYVTVSGDEYL 648 Query: 487 -KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLE-LIDLE 544 ++KN I+ + +I+++++ + E + F + L + + E + + Sbjct: 649 IEVKNALIRAVPS--SWIKISATKQCCRYRSPEVQQLFGELCCLRELLKISADEAWLQFQ 706 Query: 545 NRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP 604 +++ + S + A+ IA +D IAL+ +AK +NY RP Sbjct: 707 RQVSTTSYS---------------------TFRRANNAIATLDCLIALSDVAKSENYVRP 745 Query: 605 -IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 +D + V GRHP++ + L+Q SS +I ND L + + + ++TGPNMGGK Sbjct: 746 TFVDEAGVLNVSQGRHPVLSRILQQTSSAEYIPNDTKL----NTDGVRCMIITGPNMGGK 801 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 S L Q ++V++AQ+GS+VPA A + + +F R+G D + +GRSTF +EM+ET++I Sbjct: 802 SCLLSQVGILVVLAQIGSFVPAVEASLSVFKSIFIRMGLHDEIYAGRSTFFIEMMETSAI 861 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS-- 781 L T++S VI+DE+GRGT T DG +IA+A ++YL + +C L TH+ + L Sbjct: 862 LKSCTSRSLVIIDELGRGTGTHDGSAIAYAALKYLVKQTKCITLFVTHYPVIVQLEDEFP 921 Query: 782 --LKRFHNA---------TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVIS 830 + +H +Q E ++FL+ + PG + S+G+ V +LAG+P+++ Sbjct: 922 GHVANYHMGYILESEKADNVQADCDEEALVFLYTLTPGNSPKSFGLNVARLAGIPSSITD 981 Query: 831 RA 832 RA Sbjct: 982 RA 983 >gi|326471384|gb|EGD95393.1| DNA mismatch repair protein Msh3 [Trichophyton tonsurans CBS 112818] Length = 1040 Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 239/902 (26%), Positives = 410/902 (45%), Gaps = 138/902 (15%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM-- 83 TPM RQ +EIK+ + D+++ ++G Y+ + +DA A++ L I GK D P Sbjct: 132 TPMERQIMEIKNKHLDAVLLIQVGYKYQFYGEDARTAAKVLSIVCIP-GKLRFDDHPSEA 190 Query: 84 -------CGVPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLVT 135 VP+H + ++++L+ G+++ + +Q+E + L+A + R + + T Sbjct: 191 HLTRFASASVPIHRLHVHVKRLVAAGYKVGVVKQLETAALKAAGDNRNAPFVRKLTNMYT 250 Query: 136 PGTLTEDQL---LS---PTDSNYLMAVARIRTEWAIAWIDISTGIFKI--STSN--HDRL 185 T ED LS + YL+ + + + GI + +T N HD Sbjct: 251 KATYIEDDAELELSGALEASTGYLLCLTESGAKGQGDGEKVQIGIVAVQPATGNVIHDSF 310 Query: 186 ISDIMR--IDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNI 243 MR I+ R + S EL +G+++ A N H +S+ R+ Sbjct: 311 EDGFMRSEIETRLLHISPCELL---------LVGDLSAAT-NKLVQH-LSKGRMT----- 354 Query: 244 TTVDTFGSFSQVE-----KTAAAAAISYIKKTQMVNKPTIGYPER--------------E 284 TFG ++E KTAAA A S+I G PE + Sbjct: 355 ----TFGDNVRIERKEKSKTAAAEAHSHISSFYAGKLAATGSPEDAKASNLLDQVLKLPD 410 Query: 285 DIQSTL---------------------FIDSAARS----------NLEILRTLSG-SREQ 312 D+ L F +ARS NLEI + + S + Sbjct: 411 DVTVCLSAMIKHLTEYGLEHVFDLTKYFQSFSARSHMLLNGNTLTNLEIYQNQTDYSSKG 470 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFI---QNPILINPIQKILK 369 SL +++ + T G RL + PL + K+ R +++ + ++ + N + + Sbjct: 471 SLFWSMNRTRTKFGQRLLRRWVGRPLLEKAKLEERTEAVTELLDSDKSTLTYNLGSTLSQ 530 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAV--EKLKKL 427 D+ ++L R+ G+ ++ + ++S I + +K+ + + E + L Sbjct: 531 VRVDLEKALIRVYYGKCSRPELLTMLKSMQS-IAVSFAHVKSPADSGFKSPILSESIAIL 589 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGG---FLRDGADASLDETR--------SLRDQSKRIIA 476 P + +S + + K+D F + E R L+D K I Sbjct: 590 PTMHDDVVSYLNKINETAAKKDDKYDFFRESEESEEIGEHRLMIGTIEYELKDHLKSIAE 649 Query: 477 SLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFT 536 +L K + + + Y +EV +S ++ K + + R I ++RF Sbjct: 650 TLGKKKVQYVSVAGID--------YLVEVENSQGAL--KKVPASWRKI--SGTKKVSRFH 697 Query: 537 TLELIDL-ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAIL 595 T E++ + R + A + ++LS+ I + + + Q +A ID +L+++ Sbjct: 698 TPEVVKMMRERDQQKESLAAACDAAFLKLLSD-ISTKYQLFRDCIQALATIDALHSLSVI 756 Query: 596 AKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLL 655 A + Y +P + T + GRHP+VEK L ++ ND LS + + L+ Sbjct: 757 AAQPGYVKPKYTDDTVINISQGRHPMVEKVLIDS----YVPNDTQLST----DETRALLV 808 Query: 656 TGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMV 715 TGPNMGGKS+++RQ ALI IM Q+GSYVPA A +G++D +++R+G+ DN+ +G STFMV Sbjct: 809 TGPNMGGKSSYVRQIALICIMGQIGSYVPAESATLGMLDAVYTRMGAFDNMLAGESTFMV 868 Query: 716 EMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHEL 775 E+ ETA IL QAT +S VILDE+GRGT+T DG++IA A ++Y+ R L TH+ L Sbjct: 869 ELSETADILKQATPRSLVILDELGRGTSTHDGVAIAQAVLDYMVRNLRSLTLFITHYQNL 928 Query: 776 TDLSKS-----LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVIS 830 + L+ + L+ H + D + I FL+++ G+A SYG+ V KLA +P ++ Sbjct: 929 SRLASAFPGGELRNVHMKFTETGDQGQDITFLYEIGEGVAHRSYGLNVAKLANIPAGILD 988 Query: 831 RA 832 A Sbjct: 989 VA 990 >gi|24584320|ref|NP_523565.2| spellchecker1, isoform A [Drosophila melanogaster] gi|83304687|sp|P43248|MSH2_DROME RecName: Full=DNA mismatch repair protein spellchecker 1 gi|22946491|gb|AAF53392.2| spellchecker1, isoform A [Drosophila melanogaster] Length = 917 Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 193/690 (27%), Positives = 334/690 (48%), Gaps = 45/690 (6%) Query: 185 LISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISE--SRIADYYN 242 L + ++ + P+E + E ++ K+L + G V + P D+ + + +R+ + Sbjct: 188 LEATVVLLGPKECLLPSIEGEYSAVKTLLDRNG-VMITMPKKSGDNDLLQDLNRLLRFAK 246 Query: 243 ITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKP-TIGYPE--REDIQSTLFIDSAARSN 299 D G + A+ A + IK +VN +G+ E + D+ + +DSAA + Sbjct: 247 GQQEDATGLKELQLQLASNALKTAIKYLDLVNDAGNLGHYEIKQLDLNRFVHLDSAAVAA 306 Query: 300 LEILR------TLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINF 353 L I+ ++ R QS+L +D+ T G RL + + PL +N R + + Sbjct: 307 LNIMPKPGTHPSMPSYRWQSVLGVLDHCRTPQGHRLMGQWVKQPLRSRNILNDRHNIVQC 366 Query: 354 FIQNPILINPIQ-KILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LK 410 +++P + + LK PD+ +L + +D+ I I IL + L Sbjct: 367 LLESPDTMETLSLDYLKRIPDILMLTKKLMRRKANLQDLFRIYQVILRTPKILKVLHELD 426 Query: 411 NDLPEELRGA-----VEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETR 465 N E + A ++ L L Q +E+ + D +R ++ D+ L E + Sbjct: 427 NSTIESVICAPFKSFLKDLTGLKQMVEQVV------DFEAIERGEYLVKASFDSRLMELQ 480 Query: 466 SLRDQSKRIIASLQLKYAEETKI--KN-LKIKHNNNLGYFIEVTSSSASVLKKDLESKDR 522 + + + LQ K ++E + KN +K++ LG+ +T SVL+K+ R Sbjct: 481 QMMTELYSKMEELQFKCSQELNLDGKNQVKLESVAKLGHHFRITVKDDSVLRKN--KNYR 538 Query: 523 FIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQV 582 + + RFT+ +L + + +L E + + + + L + Sbjct: 539 IV--DVIKGGVRFTSDKLEGYADEFASCRTRYEEQQLSIVEEIIHVAVGYAAPLTLLNNE 596 Query: 583 IAIIDISIALAILAKEQN--YCRPII--DNSTNFIVKDGRHPIVEKTLKQQSSKPFIAND 638 +A +D ++ AI A+ Y RP + + + +++D RHP +E Q FIAN Sbjct: 597 LAQLDCLVSFAIAARSAPTPYVRPKMLEEGARELVLEDVRHPCLE----LQEHVNFIANS 652 Query: 639 CDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFS 698 D K ++++TGPNMGGKST++R V+MA +G++VP S A I +VD + Sbjct: 653 VDFK----KEECNMFIITGPNMGGKSTYIRSVGTAVLMAHIGAFVPCSLATISMVDSILG 708 Query: 699 RVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYL 758 RVG++DN+ G STFMVEMIET+ I+ AT++S VI+DE+GRGT+T +G IAW+ E+L Sbjct: 709 RVGASDNIIKGLSTFMVEMIETSGIIRTATDKSLVIIDELGRGTSTYEGCGIAWSIAEHL 768 Query: 759 HETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQV 818 + +C L ATHFHE+T L+++L N + + L++V G+ + S+GIQV Sbjct: 769 AKETKCFTLFATHFHEITKLAETLSTVKNCHMAAVADADDFTLLYQVRSGVMEKSFGIQV 828 Query: 819 GKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 +LA P V+ A ++ FE + QK Sbjct: 829 ARLANFPEHVVQNAQEVYNEFEDEHVDKQK 858 >gi|330878040|gb|EGH12189.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. glycinea str. race 4] Length = 303 Score = 243 bits (620), Expect = 1e-61, Method: Composition-based stats. Identities = 129/292 (44%), Positives = 192/292 (65%), Gaps = 25/292 (8%) Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 ++ GRHP+VE+ L S PF+AND L +S ++ ++TGPNMGGKST++RQ ALI Sbjct: 27 IEQGRHPVVEQVL----STPFVANDLALD-----DSTRMLVITGPNMGGKSTYMRQTALI 77 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 V++A +GS+VPA+ + +VD++F+R+GS+D+LA GRSTFMVEM ETA+IL+ AT++S V Sbjct: 78 VLLAHIGSFVPAASCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLV 137 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 ++DE+GRGT+T DGLS+AWA E L + R L ATH+ ELT L +S N L + Sbjct: 138 LMDEVGRGTSTFDGLSLAWAAAECLAQL-RAYTLFATHYFELTVLPESEPLVSNVHLNAT 196 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 + NE I+FLH+V+PG A SYG+ V +LAG+P VISRA + L+ E L Sbjct: 197 EHNERIVFLHRVLPGPASQSYGLAVAQLAGVPGKVISRAKEHLQRLET--------TSLP 248 Query: 854 YPEIQTKESKNNLSKNDKLF-------VEKIKCLNLDEMSPLTALKTLYAVK 898 + + +TK K + + +F ++++ + +D+M+P AL LY ++ Sbjct: 249 HEQPRTKPGKPAVPQQSDMFASLPHPVLDELSKVKVDDMTPRQALDLLYTLQ 300 >gi|4139230|gb|AAD04176.1| mismatch repair protein [Arabidopsis thaliana] Length = 937 Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 217/719 (30%), Positives = 349/719 (48%), Gaps = 69/719 (9%) Query: 160 RTEWAIAWIDISTGIFKIST----SNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFET 215 R +A++D++ + ++ S L S ++ + +E IF + E KSL+++ Sbjct: 155 RCVIGMAYVDLTRRVLGLAEFLDDSRFTNLESSLIALGAKECIFPAESGKSNECKSLYDS 214 Query: 216 LGNVAVA----QPNVFFDHSI-SESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKT 270 L AV + + F + S+ + NI V S + A A +S+ Sbjct: 215 LERCAVMITERKKHEFKGRDLDSDLKRLVKGNIEPVRDLVSGFDLATPALGALLSF--SE 272 Query: 271 QMVNKPTIG--YPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT-GAG 326 + N+ G R DI + +DSAA L ++ + + + + SL ++ + T G G Sbjct: 273 LLSNEDNYGNFTIRRYDIGGFMRLDSAAMRALNVMESKTDANKNFSLFGLMNRTCTAGMG 332 Query: 327 GRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRG 386 RL + PL D +I TRLD + F++ L +++ LK DV R L L+ RG Sbjct: 333 KRLLHMWLKQPLVDLNEIKTRLDIVQCFVEEAGLRQDLRQHLKRISDVERLLRSLERRRG 392 Query: 387 EPKDIAVIRDGIRSGINILNLFLKNDLPE---ELRGAVEK--LKKLPQ-SLEKTLSSML- 439 + I + +S I + F+K + + E + + LKKL S + L + Sbjct: 393 GLQHIIKL---YQSAIRLP--FIKTAMQQYTGEFASLISERYLKKLEALSDQDHLGKFID 447 Query: 440 ----SDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRI---IASLQLKYAEETKI---K 489 S DL + + D L SL+DQ + + I L K A E + K Sbjct: 448 LVECSVDLDQLENGEYMISSNYDTKL---ASLKDQKELLEQQIHELHKKTAIELDLQVDK 504 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LK+ G+ +T ++K L ++ FI +T + +FT +L L ++ + Sbjct: 505 ALKLDKAAQFGHVFRITKKEEPKIRKKLTTQ--FIVLETRKDGVKFTNTKLKKLGDQYQS 562 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKE--QNYCRPIID 607 + + E + + + SE ++ + +++ +D+ ++ A LA YCRP I Sbjct: 563 VVDDYRSCQKELVDRVVETVTSFSEVFEDLAGLLSEMDVLLSFADLAASCPTPYCRPEIT 622 Query: 608 --NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLW--LLTGPNMGGK 663 ++ + +++ RHP VE Q FI NDC L GK W ++TGPNMGGK Sbjct: 623 SLDAGDIVLEGSRHPCVEA----QDWVNFIPNDCRLM------RGKSWFQIVTGPNMGGK 672 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 STF+RQ +IV+MAQ+GS+VP A I I D +F+RVG+ D G STFM EM+ETASI Sbjct: 673 STFIRQVGVIVLMAQVGSFVPCDKASISIRDCIFARVGAGDCQLRGVSTFMQEMLETASI 732 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS-- 781 L AT++S +I+DE+GRGT+T DG +AWA E+L + R L ATHFHELT L+++ Sbjct: 733 LKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLVQVKRAPTLFATHFHELTALAQANS 792 Query: 782 --------LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 + FH + + + + L+KV PG D S+GI V + A P +V++ A Sbjct: 793 EVSGNTVGVANFH-VSAHIDTESRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVALA 850 >gi|260815207|ref|XP_002602365.1| hypothetical protein BRAFLDRAFT_283756 [Branchiostoma floridae] gi|229287674|gb|EEN58377.1| hypothetical protein BRAFLDRAFT_283756 [Branchiostoma floridae] Length = 1278 Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 176/616 (28%), Positives = 302/616 (49%), Gaps = 64/616 (10%) Query: 290 LFIDSAARSNLEILR-TLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRL 348 + +D +NLEI+ +++GSRE +LL +D T G RLF + + +PL + IN RL Sbjct: 674 MVLDGVTLNNLEIIENSVTGSREGTLLDRLDMCCTPFGKRLFKQWLCAPLCNPASINDRL 733 Query: 349 DSINFFIQNPILINPIQKILKSSPDVPRSLSRL------KIGRGEPKDIAVI-------- 394 D++ + ++ + +IL+ PD+ R L ++ + + P AV Sbjct: 734 DAVEDLMACRDVVAEVTEILRKVPDLERLLQKIHTLGLARRNKDHPDGRAVFFEDVNYSK 793 Query: 395 ---------RDGIRSGINILNLF------LKNDLPEE---LRGAVEKLKKLPQSLEKTLS 436 DG RS + I+ +F K+ L ++ L E + P + + Sbjct: 794 KKISDFLSALDGFRSAMRIVRMFKDKVDDFKSKLLKQSISLESDKEGGGRFPNLSFQLMY 853 Query: 437 SMLSDDLPTFKRDGGFL-RDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 + D +++G + ++G + DE S R + + + + + Sbjct: 854 FDRAFDHNAARKNGVIIPKEGVNRDYDEALSDIKSVHREMDRYKDRQKQRMGCSTISFWS 913 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 + Y +E+ S+ LK+ + D + + R+TT E+ D+ + A Sbjct: 914 SGKTRYCLEIPESA---LKRHV--PDEYELSSSKKGFKRYTTQEIKDMVKTLEEAEGRRE 968 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDISIALA--ILAKEQNYCRPII----DNS 609 ++ + ++ E + D A Q ++++D+ ++L L + + CRP + N Sbjct: 969 AALKDTMRTIFHSFDESYKEWDAAVQCVSVLDVLMSLMQYSLCGDGDMCRPELVTPEKNM 1028 Query: 610 TNFI-VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDK---NSGKLWLLTGPNMGGKST 665 FI +++GRHP + +T S FI ND + + ++ + L+TGPNMGGKST Sbjct: 1029 QPFIEIREGRHPCICRTY---SGGDFIPNDTVVGTSAESGGTDASSVVLVTGPNMGGKST 1085 Query: 666 FLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILN 725 +RQ +I ++AQ+G YVPA + +D++F+R+G++D + SG STF VE+ ET+SIL Sbjct: 1086 LMRQVGIITVIAQLGCYVPAQSCRLTPIDRVFTRLGASDRIMSGESTFFVELSETSSILQ 1145 Query: 726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTD---LSKSL 782 AT S V+LDE+GRGTAT DG +IA + ++ L E RCR L +TH+H L + ++ Sbjct: 1146 HATCHSLVLLDELGRGTATYDGTAIACSVVKELSENLRCRTLFSTHYHSLVEEFSHDPNV 1205 Query: 783 KRFHNATLQVSD-----SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILK 837 + H A + ++ S E I FL+K + G SYG +LA LP VI A D K Sbjct: 1206 RLGHMACMVENENDEDPSQETITFLYKFVKGACPKSYGFNAARLADLPEEVIRVAQDKAK 1265 Query: 838 TFEKLYHHNQKDMRLY 853 FE+ N + ++L+ Sbjct: 1266 EFEE----NTERLKLF 1277 Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 111/227 (48%), Gaps = 32/227 (14%) Query: 2 TKEFSSPQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALL 61 T E P+ LY L +K++TP+MR++ E+KS D+++F+++G FYEL+ DA+ Sbjct: 323 TDEDYDPRTLYVPDSFL---MKNTTPLMRKWWEVKSQLYDTVLFFKVGKFYELYHMDAIT 379 Query: 62 ASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRG 121 LG+ K + CG P Y L++ G+R+A EQ E+ ++++R Sbjct: 380 GVNELGLIFMKGSQ------AHCGFPEIAYGRYSDTLVQKGYRVARIEQTETVPQSEERY 433 Query: 122 NK--------SLVRRNVVRLVTPGTLTEDQLLSPTD---SNYLMAVARIRTE-------- 162 K +VRR V R+ T GT T L T ++YL+A+A E Sbjct: 434 RKLAKPTKFDKVVRREVCRITTKGTKTYSFLEGDTGEAANSYLLAIAEKANEDIAGDQSV 493 Query: 163 WAIAWIDISTGIFKISTSNHD----RLISDIMRIDPREIIFSEKELS 205 + + ++D S G F I D RL + I + P +++F +LS Sbjct: 494 YGVCFVDTSIGKFHIGQFQDDRHSSRLRTLIAQYTPSQVLFERGKLS 540 >gi|68467217|ref|XP_722270.1| hypothetical protein CaO19.12411 [Candida albicans SC5314] gi|68467446|ref|XP_722156.1| hypothetical protein CaO19.4945 [Candida albicans SC5314] gi|46444105|gb|EAL03382.1| hypothetical protein CaO19.4945 [Candida albicans SC5314] gi|46444229|gb|EAL03505.1| hypothetical protein CaO19.12411 [Candida albicans SC5314] Length = 1214 Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 228/869 (26%), Positives = 404/869 (46%), Gaps = 84/869 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 T +QY +IKS +++VF++ G FYEL+ +DA++A+ + + G+ ++ + G Sbjct: 316 TAFEKQYWQIKSKMWNTVVFFQKGKFYELYENDAVIANTQFDLKIAGGGR---ANMKLAG 372 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKS----LVRRNVVRLVTPGTLTE 141 +P + ++ ++ I G+++A EQ ES L + RG + ++ R + ++T GTLT Sbjct: 373 IPEMSFEYWAKEFISHGYKVAKVEQKESMLVKQMRGGATKEEKIIERELKGILTAGTLTN 432 Query: 142 DQLLSPTDSNYLMAVARIRTE-----WAIAWIDISTGIFKISTSNHD----RLISDIMRI 192 ++S + Y +++ E + +A++D +T + D +L + I +I Sbjct: 433 LDMISNDMATYCLSIKEEDKEDGTKTFGVAFVDTATSELNFIELDDDAECTKLDTLITQI 492 Query: 193 DPREIIFSEKELSHAEYKSL-FETLGNVAVAQP----NVFFDHSISESRI--ADYYNITT 245 +P+EII + L K L F T + + F+D+ I+ ++ A YY+ Sbjct: 493 NPKEIICEKGNLCQIATKILKFCTHSDHQIWNALNPITEFWDYDIALEQLVKAKYYDAEN 552 Query: 246 VDTFGSFSQV-------EKTAAAAAISYIKKTQMVNKPT----IG----YPEREDIQSTL 290 +D + ++ +V + A A + +M+ T +G Y + S + Sbjct: 553 LDDYSNYPKVLVDFKENHQVAFNAFGGLLYYLKMLKLDTSIMSLGNIHEYHISRNSASHM 612 Query: 291 FIDSAARSNLEILRTLS-GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLD 349 +D +NLEIL S G+ + +L K ++ + T G R + + PL +IN R D Sbjct: 613 ILDGVTLNNLEILNNTSDGTTKGTLFKLVNRATTSFGKRQLQKWVLHPLFKVDEINQRYD 672 Query: 350 SINFFIQNPILINPI-QKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF 408 S+++ + + + + I Q L + PD+ R L+R+ G + +D + + S + + Sbjct: 673 SVDYLMNDGLELRSILQDTLANIPDLERLLARVHGGTLKFRDFLKVIESFESIAGVSSKL 732 Query: 409 LKNDLPEELRGAVEK-LKKLPQSLEKTLSSMLSD--DLPTFKRDGGFLRDGADASLDETR 465 + D G + K LK P + + L D D K D G D D ++ Sbjct: 733 V--DFTNVESGMLYKYLKSFPHEM-RELIQQWEDAFDREQAKNDIIVPSAGTDEEFDNSQ 789 Query: 466 SLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIH 525 + + K + L +Y K + + + + Y IEV L+ + Sbjct: 790 ASMEDLKTQLDKLLKEYKRTYKSQEICYRDSGKEIYLIEVPFK--------LKVPGDWKQ 841 Query: 526 RQTMSNLTRFTTLELIDL------ENRITNATNSALLIEL-ESFEILSNAIIEQSESLDN 578 + S + R+ + E+ L + + L I + E F+ N ++ Sbjct: 842 MGSTSKVKRYYSPEVETLAKELRGQQELHKMVCDTLKIRMYEKFDKHYNVWMQ------- 894 Query: 579 ASQVIAIIDISIALAILAKEQNY--CRP-IIDNSTNFI-VKDGRHPIVEKTLKQQSSKPF 634 Q IA ID +AL ++ Y CRP +I+ I K+ RHP S+K F Sbjct: 895 VIQTIANIDCLLALTKASETIGYPSCRPKLIEADKGCINFKELRHPCF------VSTKEF 948 Query: 635 IANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVD 694 I ND L + LLTG N GKST +R AL +I++Q+G Y+PA A + VD Sbjct: 949 IPNDVQLGG----DEPHFGLLTGANAAGKSTLMRTTALAIILSQIGCYIPAESAELTPVD 1004 Query: 695 KLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWAT 754 ++ +R+G+ DN+ G+STF VE+ ET IL+ AT +S VILDE+GRG ++ DG +IA + Sbjct: 1005 RIMTRLGANDNILQGKSTFFVELSETKKILSNATPRSLVILDELGRGGSSSDGFAIAESV 1064 Query: 755 IEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ--VSDSNEGIIFLHKVIPGIADH 812 + +L + G ATH+ L K+ + + V + I FL+K+ G A Sbjct: 1065 LHHLATHVQSLGFFATHYGTLGLSFKTHPQIKQLRMGIVVDSGSRNITFLYKLETGTAPK 1124 Query: 813 SYGIQVGKLAGLPNTVISRAYDILKTFEK 841 S+G+ V + G+P+ ++ A K +E+ Sbjct: 1125 SFGMNVASMCGIPDAIVDNAEIAAKAYEQ 1153 >gi|261206036|ref|XP_002627755.1| DNA mismatch repair protein msh6 [Ajellomyces dermatitidis SLH14081] gi|239592814|gb|EEQ75395.1| DNA mismatch repair protein msh6 [Ajellomyces dermatitidis SLH14081] Length = 1170 Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 226/867 (26%), Positives = 391/867 (45%), Gaps = 92/867 (10%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P +QY EIK D++VF++ G FYEL+ +DA + + + LT R ++ M G Sbjct: 284 SPFEKQYWEIKQKFWDTVVFFKKGKFYELYENDATIGHQLFDLKLTDR-----VNMRMVG 338 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL--EAKKRGNKS---------LVRRNVVRLV 134 VP + +H+ + + G +IA +Q ES L E +++ K+ ++RR + ++ Sbjct: 339 VPEMSLDHWANQFVAKGFKIARVDQSESALGKEMREKQGKTNGTPGKQDKIIRRELACVL 398 Query: 135 TPGTLTEDQLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFKISTSNHD----RLI 186 T GTL + +L S Y +A+ + IA++D +TG F ++ D + Sbjct: 399 TSGTLVDGSMLQDDMSTYCVAIKEALVNDLPAFGIAFVDTATGQFYLAEFMDDVDMTKFE 458 Query: 187 SDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA---QPNVFF---DHSISESRIADY 240 + + + P+E++ + +S + L G + +P F D ++ E ++Y Sbjct: 459 TFVAQTRPQELLLEKSVMSTKALRILKNNTGPTTLWNYLKPCKEFWEADITVRELDASNY 518 Query: 241 YNITTVDTFGSFSQVEK---------TAAAAAISYIKKTQMVNK-PTIG-YPEREDIQ-- 287 + D ++ + + +A A + Y++ ++ TIG + + I+ Sbjct: 519 FVSDDGDNIEAWPEALRHARDKEFVMSAFGALVQYLRMLKIERDLITIGNFTWYDPIKKA 578 Query: 288 STLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINT 346 ++L +D NLEI + G +E +L + ++ T G R+F + + PL D+ KIN Sbjct: 579 TSLVLDGQTLINLEIFSNSFDGGQEGTLFQLLNRCTTPFGKRMFKQWVCHPLMDTKKINA 638 Query: 347 RLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILN 406 RLD+++ + + N L PD+ R +SR+ + +D + +G I+ Sbjct: 639 RLDAVDALNADRSIQNQFSSQLTKMPDLERLISRVHARSCKAQDFLRVLEGFEQ-IDYAM 697 Query: 407 LFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFL--RDGADASLDET 464 LK P E G + +L L L + T +D G L G + D + Sbjct: 698 GLLKETGPGE--GVIGQLVASMPDLSGHLQYWKTAFDRTKAKDSGILVPEAGVEEDFDAS 755 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 + + + L K ++ + + N Y +EV +V K + Sbjct: 756 HDRISEIESDLDQLLKKVRKQLGSNAIVYRDNGKEIYQLEVPIKIKNVPKS-------WD 808 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 RF EL L + A + I E E + A +VIA Sbjct: 809 QMSATKQAKRFYFAELRSLIRELQEAQETHSQIVKEVAGRFYARFDENYSTWLAAVRVIA 868 Query: 585 IIDISIALAILAKEQNY--CRPII--DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCD 640 +D I+LA + Y CRP+ D + ++ RHP + + FI ND Sbjct: 869 QLDCLISLARASSALGYPSCRPVFVDDERSVLEFEELRHPCMLPNVGD-----FIPNDVK 923 Query: 641 LSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRV 700 L NS + LLTG NA VIMAQ+G +VP A + VD++ SR+ Sbjct: 924 LG----GNSPNINLLTG-----------ANAAAVIMAQIGCHVPCKSARLTPVDRVMSRL 968 Query: 701 GSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHE 760 G+ DN+ + +STF VE+ ET IL++AT +S VILDE+GRGT++ DG+++A A + ++ Sbjct: 969 GANDNIFASQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVLHHVAT 1028 Query: 761 TNRCRGLLATHFHELT-------DLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHS 813 G ATH+H LT +++ R H V D + + FL+K+ G+A+ S Sbjct: 1029 HIGALGFFATHYHSLTAEFEGHPEIAPRRMRIH-----VDDEEKRVTFLYKLEDGVAEGS 1083 Query: 814 YGIQVGKLAGLPNTVISRAYDILKTFE 840 +G+ + G+P+ V+ RA K +E Sbjct: 1084 FGMHCASMCGIPDKVVERAEVAAKQWE 1110 >gi|303316169|ref|XP_003068089.1| DNA mismatch repair family protein [Coccidioides posadasii C735 delta SOWgp] gi|240107765|gb|EER25944.1| DNA mismatch repair family protein [Coccidioides posadasii C735 delta SOWgp] Length = 1125 Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 242/894 (27%), Positives = 433/894 (48%), Gaps = 115/894 (12%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK---------- 75 TP+ +Q I+IK+ + D+++ +G + F +DA +A++ L I GK Sbjct: 215 TPLEKQVIDIKNKHKDAILVVEVGYKFRFFGEDARIAAKELSIVCIP-GKLRFDEHPSEA 273 Query: 76 HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLV 134 HL + +PVH + ++++L++ GH++ + Q+E + L+A + R + L Sbjct: 274 HLNR-FASASIPVHRLHVHVKRLVRAGHKVGVVRQLETAALKAAGDNRNAPFERKLTHLY 332 Query: 135 TPGTLTED----QLLSPTDSN-------YLMAVARIRTEWAIAWID---ISTGIFKI--S 178 T GT +D + L+ +N YL+ + A W + + GI + + Sbjct: 333 TKGTYIDDTEELEGLNAVGANSAAPATGYLLCMTESN---AKGWGNDEKVQVGILAVQPA 389 Query: 179 TSN--HDRLISDIMR---------IDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVF 227 T N HD MR I P E + ++S A K + +++ ++ NVF Sbjct: 390 TGNIIHDSFEDGFMRTEIETRLLHIAPCEFLLI-GDVSRATDK----LVQHLSGSKMNVF 444 Query: 228 FD----HSISESRIADYYNITTVDTF-----GSFSQVEKTAA------------------ 260 D +S+S+ A + + V +F + S ++ A Sbjct: 445 GDKVRVERVSKSKTAAAESHSHVSSFYAGRMKATSTIQDERARDLLDKVLNLPEDVTICL 504 Query: 261 AAAISYIKKTQMVNKPTI-GYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQSLLKTI 318 +A I ++K+ + N + Y + +S + ++ NLEI + + + + SL T+ Sbjct: 505 SAMIKHLKEYNLENVFDLTKYFQPFSARSHMLLNGNTLINLEIYQNQTEQTSKGSLFWTL 564 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL--INPIQKIL-KSSPDVP 375 D + T G RL + + PL D ++ R+ ++ + + ++ +L K D+ Sbjct: 565 DRTKTRFGQRLLRKWVGRPLLDKQELENRVAAVTELKDSDATPRVGRLKTLLSKVKTDLE 624 Query: 376 RSLSRLKIGRG-EPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 ++L R+ G+ P+ + V++ ++ D + E + +LP L+ Sbjct: 625 KNLLRIYYGKCTRPELLTVLQTLQLIATEFSHVKSPADAGFDSPVINEAITQLPAVLDDV 684 Query: 435 LSSMLSDDLPTFKRDG--GFLRDGADASLDETRSLRDQSKRIIASLQ--LKYAEETKIKN 490 +S + +L + K D F ++ +ET + +Q K I S++ L+ T + Sbjct: 685 VSYLNKINLHSAKADDKFSFFQES-----EETDEITEQ-KLGIGSVEHDLEEYRNTAAEI 738 Query: 491 L---KIKHNNNLG--YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 L K+ + N G Y IEV +SS + K + + R I ++RF E+++L Sbjct: 739 LCKKKVCYVTNAGIEYLIEVENSSLQM--KKIPASWRKI--SGTKKVSRFHPPEVVNL-M 793 Query: 546 RITNATNSALLIELE-SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP 604 R + AL + +F L I + + + Q +A +D ++LA +A + Y RP Sbjct: 794 RERDQHKEALAAACDKAFLGLLADISTKYQPFRDCIQALATLDCFMSLAAVAAQPGYVRP 853 Query: 605 IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 + V+ GRHP+VE+ L ++ ND +L + + L+TGPNMGGKS Sbjct: 854 TYADEARISVRGGRHPMVEQLLLDT----YVPNDTELGI----DGTRALLVTGPNMGGKS 905 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 +++RQ ALI IM Q+GSYVPA A +G++D +++R+G+ DN+ +G STFMVE+ ET+ IL Sbjct: 906 SYVRQVALISIMGQIGSYVPAESATLGMLDAVYTRMGAFDNMLAGESTFMVELSETSDIL 965 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS--- 781 QAT +S VILDE+GRGT+T DG++IA A ++Y+ R L TH+ L++L+++ Sbjct: 966 KQATPRSLVILDELGRGTSTHDGVAIAQAVLDYMVRDIRSLTLFITHYQHLSNLARTFPN 1025 Query: 782 --LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAY 833 L+ H + + I FL++V G+A SYG+ V +LA +P++V+ AY Sbjct: 1026 GELRNVHMKFTESGKDGQDITFLYEVGEGVAHRSYGLNVARLANIPSSVLDVAY 1079 >gi|326484465|gb|EGE08475.1| DNA mismatch repair protein Msh3 [Trichophyton equinum CBS 127.97] Length = 1148 Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 239/902 (26%), Positives = 410/902 (45%), Gaps = 138/902 (15%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM-- 83 TPM RQ +EIK+ + D+++ ++G Y+ + +DA A++ L I GK D P Sbjct: 240 TPMERQIMEIKNKHLDAVLLIQVGYKYQFYGEDARTAAKVLSIVCIP-GKLRFDDHPSEA 298 Query: 84 -------CGVPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLVT 135 VP+H + ++++L+ G+++ + +Q+E + L+A + R + + T Sbjct: 299 HLTRFASASVPIHRLHVHVKRLVAAGYKVGVVKQLETAALKAAGDNRNAPFVRKLTNMYT 358 Query: 136 PGTLTEDQL---LS---PTDSNYLMAVARIRTEWAIAWIDISTGIFKI--STSN--HDRL 185 T ED LS + YL+ + + + GI + +T N HD Sbjct: 359 KATYIEDDAELELSGALEASTGYLLCLTESGAKGQGDGEKVQIGIVAVQPATGNVIHDSF 418 Query: 186 ISDIMR--IDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNI 243 MR I+ R + S EL +G+++ A N H +S+ R+ Sbjct: 419 EDGFMRSEIETRLLHISPCELL---------LVGDLSAAT-NKLVQH-LSKGRMT----- 462 Query: 244 TTVDTFGSFSQVE-----KTAAAAAISYIKKTQMVNKPTIGYPER--------------E 284 TFG ++E KTAAA A S+I G PE + Sbjct: 463 ----TFGDNVRIERKEKSKTAAAEAHSHISSFYAGKLAATGSPEDAKASNLLDQVLKLPD 518 Query: 285 DIQSTL---------------------FIDSAARS----------NLEILRTLSG-SREQ 312 D+ L F +ARS NLEI + + S + Sbjct: 519 DVTVCLSAMIKHLTEYGLEHVFDLTKYFQSFSARSHMLLNGNTLTNLEIYQNQTDYSSKG 578 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFI---QNPILINPIQKILK 369 SL +++ + T G RL + PL + K+ R +++ + ++ + N + + Sbjct: 579 SLFWSMNRTRTKFGQRLLRRWVGRPLLEKAKLEERTEAVTELLDSDKSTLTYNLGSTLSQ 638 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAV--EKLKKL 427 D+ ++L R+ G+ ++ + ++S I + +K+ + + E + L Sbjct: 639 VRVDLEKALIRVYYGKCSRPELLTMLKSMQS-IAVSFAHVKSPADSGFKSPILSESIAIL 697 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGG---FLRDGADASLDETR--------SLRDQSKRIIA 476 P + +S + + K+D F + E R L+D K I Sbjct: 698 PTMHDDVVSYLNKINDTAAKKDDKYDFFRESEESEEIGEHRLMIGTIEYELKDHLKSIAE 757 Query: 477 SLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFT 536 +L K + + + Y +EV +S ++ K + + R I ++RF Sbjct: 758 TLGKKKVQYVSVAGID--------YLVEVENSQGAL--KKVPASWRKI--SGTKKVSRFH 805 Query: 537 TLELIDL-ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAIL 595 T E++ + R + A + ++LS+ I + + + Q +A ID +L+++ Sbjct: 806 TPEVVKMMRERDQQKESLAAACDAAFLKLLSD-ISTKYQLFRDCIQALATIDALHSLSVI 864 Query: 596 AKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLL 655 A + Y +P + T + GRHP+VEK L ++ ND LS + + L+ Sbjct: 865 AAQPGYVKPKYTDDTVINISQGRHPMVEKVLIDS----YVPNDTQLST----DETRALLV 916 Query: 656 TGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMV 715 TGPNMGGKS+++RQ ALI IM Q+GSYVPA A +G++D +++R+G+ DN+ +G STFMV Sbjct: 917 TGPNMGGKSSYVRQIALICIMGQIGSYVPAESATLGMLDAVYTRMGAFDNMLAGESTFMV 976 Query: 716 EMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHEL 775 E+ ETA IL QAT +S VILDE+GRGT+T DG++IA A ++Y+ R L TH+ L Sbjct: 977 ELSETADILKQATPRSLVILDELGRGTSTHDGVAIAQAVLDYMVRNLRSLTLFITHYQNL 1036 Query: 776 TDLSKS-----LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVIS 830 + L+ + L+ H + D + I FL+++ G+A SYG+ V KLA +P ++ Sbjct: 1037 SRLASAFPGGELRNVHMKFTETGDQGQDITFLYEIGEGVAHRSYGLNVAKLANIPAGILD 1096 Query: 831 RA 832 A Sbjct: 1097 VA 1098 >gi|302498746|ref|XP_003011370.1| hypothetical protein ARB_02429 [Arthroderma benhamiae CBS 112371] gi|291174920|gb|EFE30730.1| hypothetical protein ARB_02429 [Arthroderma benhamiae CBS 112371] Length = 1141 Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 235/902 (26%), Positives = 408/902 (45%), Gaps = 138/902 (15%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK---------- 75 TPM RQ +EIK+ + D+++ ++G Y+ + +DA +A++ L I GK Sbjct: 233 TPMERQIMEIKNKHLDAVLLIQVGYKYQFYGEDARIAAKVLSIVCIP-GKLRFDEHPSEA 291 Query: 76 HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLV 134 HL + VP+H + ++++L+ G+++ + +Q+E + L+A + R + + Sbjct: 292 HLTR-FASASVPIHRLHVHVKRLVAAGYKVGVVKQLETAALKAAGDNRNAPFVRKLTNMY 350 Query: 135 TPGTLTEDQL-------LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI--STSN--HD 183 T T ED L P+ + YL+ + + + GI + +T N +D Sbjct: 351 TKATYIEDDAELELSGALEPS-TGYLLCLTESGAKGQGDGEKVQIGIVAVQPATGNVIYD 409 Query: 184 RLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNI 243 MR EI E L H +A + + D S + +++ + Sbjct: 410 SFEDGFMR---SEI---ETRLLH------------IAPCELLLVGDLSAATNKLVQHLAK 451 Query: 244 TTVDTFGSFSQVE-----KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTL-------- 290 + TFG ++E KTAAA A S+I G PE + + L Sbjct: 452 GRMTTFGDSVRIERREKSKTAAAEAHSHISSFYAGKMAATGSPEDTNASNLLDQVLKLPD 511 Query: 291 ---------------------------FIDSAARS----------NLEILRTLSG-SREQ 312 F +ARS NLEI + + S + Sbjct: 512 DVTICLSAMIKHLTEYGLEHVFDLTKYFQSFSARSHMLLNGNTLTNLEIYQNQTDYSSKG 571 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFI---QNPILINPIQKILK 369 SL +++ + T G RL + PL D K+ R +++ + ++ + N + + Sbjct: 572 SLFWSMNRTRTKFGQRLLRRWVGRPLLDKAKLEERTEAVTELLDSDKSTLTYNLGATLSQ 631 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAV--EKLKKL 427 D+ ++L R+ G+ ++ + ++S I +K+ + + E + L Sbjct: 632 VRVDLEKALIRVYYGKCSRPELLTMLKSMQS-IAASFAHVKSPADSAFKSPILSESIAIL 690 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGG---FLRDGADASLDETR--------SLRDQSKRIIA 476 P + +S + + K+D F + E R L+D K I Sbjct: 691 PTMHDDVVSYLNKINETAAKKDDKYDFFRESEESEEIGEHRLMIGTIEYELKDHLKSIAE 750 Query: 477 SLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFT 536 +L K + + + Y +EV +S ++ K + + R I ++RF Sbjct: 751 TLGKKKVQYVSVAGID--------YLVEVENSQGAL--KKVPASWRKI--SGTKKVSRFH 798 Query: 537 TLELIDL-ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAIL 595 T E++ + R + A + ++LS+ I + + + Q +A ID +L+++ Sbjct: 799 TPEVVKMMRERDQQKESLAAACDTAFLKLLSD-ISTKYQLFRDCIQALATIDALHSLSVI 857 Query: 596 AKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLL 655 A + Y +P + T + GRHP+VEK L ++ ND LS + + L+ Sbjct: 858 AAQPGYVKPKYTDDTIINITQGRHPMVEKVLIDS----YVPNDTQLST----DETRALLI 909 Query: 656 TGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMV 715 TGPNMGGKS+++RQ ALI IM Q+GSYVPA A +G++D +++R+G+ DN+ +G STFMV Sbjct: 910 TGPNMGGKSSYVRQIALICIMGQIGSYVPAESATLGMLDAVYTRMGAFDNMLAGESTFMV 969 Query: 716 EMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHEL 775 E+ ETA IL QAT +S VILDE+GRGT+T DG++IA A ++Y+ R L TH+ L Sbjct: 970 ELSETADILKQATPRSLVILDELGRGTSTHDGVAIAQAVLDYMVRNLRSLTLFITHYQNL 1029 Query: 776 TDLSKS-----LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVIS 830 + L+ + L+ H + D + I FL+++ G+A SYG+ V KLA +P ++ Sbjct: 1030 SRLASAFPGGELRNVHMKFTESGDHGQDITFLYEIGEGVAHRSYGLNVAKLANIPAGILE 1089 Query: 831 RA 832 A Sbjct: 1090 VA 1091 >gi|320032462|gb|EFW14415.1| DNA mismatch repair protein Msh3 [Coccidioides posadasii str. Silveira] Length = 1190 Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 242/894 (27%), Positives = 433/894 (48%), Gaps = 115/894 (12%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK---------- 75 TP+ +Q I+IK+ + D+++ +G + F +DA +A++ L I GK Sbjct: 280 TPLEKQVIDIKNKHKDAILVVEVGYKFRFFGEDARIAAKELSIVCIP-GKLRFDEHPSEA 338 Query: 76 HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLV 134 HL + +PVH + ++++L++ GH++ + Q+E + L+A + R + L Sbjct: 339 HLNR-FASASIPVHRLHVHVKRLVRAGHKVGVVRQLETAALKAAGDNRNAPFERKLTHLY 397 Query: 135 TPGTLTED----QLLSPTDSN-------YLMAVARIRTEWAIAWID---ISTGIFKI--S 178 T GT +D + L+ +N YL+ + A W + + GI + + Sbjct: 398 TKGTYIDDTEELEGLNAVGANSAAPATGYLLCMTESN---AKGWGNDEKVQVGILAVQPA 454 Query: 179 TSN--HDRLISDIMR---------IDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVF 227 T N HD MR I P E + ++S A K + +++ ++ NVF Sbjct: 455 TGNIIHDSFEDGFMRTEIETRLLHIAPCEFLLI-GDVSRATDK----LVQHLSGSKMNVF 509 Query: 228 FD----HSISESRIADYYNITTVDTF-----GSFSQVEKTAA------------------ 260 D +S+S+ A + + V +F + S ++ A Sbjct: 510 GDKVRVERVSKSKTAAAESHSHVSSFYAGRMKATSTIQDERARDLLDKVLNLPEDVTICL 569 Query: 261 AAAISYIKKTQMVNKPTI-GYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQSLLKTI 318 +A I ++K+ + N + Y + +S + ++ NLEI + + + + SL T+ Sbjct: 570 SAMIKHLKEYNLENVFDLTKYFQPFSARSHMLLNGNTLINLEIYQNQTEQTSKGSLFWTL 629 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL--INPIQKIL-KSSPDVP 375 D + T G RL + + PL D ++ R+ ++ + + ++ +L K D+ Sbjct: 630 DRTKTRFGQRLLRKWVGRPLLDKQELEDRVAAVTELKDSDATPRVGRLKTLLSKVKTDLE 689 Query: 376 RSLSRLKIGRG-EPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 ++L R+ G+ P+ + V++ ++ D + E + +LP L+ Sbjct: 690 KNLLRIYYGKCTRPELLTVLQTLQLIATEFSHVKSPADAGFDSPVINEAITQLPAVLDDV 749 Query: 435 LSSMLSDDLPTFKRDG--GFLRDGADASLDETRSLRDQSKRIIASLQ--LKYAEETKIKN 490 +S + +L + K D F ++ +ET + +Q K I S++ L+ T + Sbjct: 750 VSYLNKINLHSAKADDKFSFFQES-----EETDEITEQ-KLGIGSVEHDLEEYRNTAAEI 803 Query: 491 L---KIKHNNNLG--YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 L K+ + N G Y IEV +SS + K + + R I ++RF E+++L Sbjct: 804 LCKKKVCYVTNAGIEYLIEVENSSLQM--KKIPASWRKI--SGTKKVSRFHPPEVVNL-M 858 Query: 546 RITNATNSALLIELE-SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP 604 R + AL + +F L I + + + Q +A +D ++LA +A + Y RP Sbjct: 859 RERDQHKEALAAACDKAFLGLLADISTKYQPFRDCIQALATLDCFMSLAAVAAQPGYVRP 918 Query: 605 IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 + V+ GRHP+VE+ L ++ ND +L + + L+TGPNMGGKS Sbjct: 919 TYADEARISVRGGRHPMVEQLLLDT----YVPNDTELGI----DGTRALLVTGPNMGGKS 970 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 +++RQ ALI IM Q+GSYVPA A +G++D +++R+G+ DN+ +G STFMVE+ ET+ IL Sbjct: 971 SYVRQVALISIMGQIGSYVPAESATLGMLDAVYTRMGAFDNMLAGESTFMVELSETSDIL 1030 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS--- 781 QAT +S VILDE+GRGT+T DG++IA A ++Y+ R L TH+ L++L+++ Sbjct: 1031 KQATPRSLVILDELGRGTSTHDGVAIAQAVLDYMVRDIRSLTLFITHYQHLSNLARTFPN 1090 Query: 782 --LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAY 833 L+ H + + I FL++V G+A SYG+ V +LA +P++V+ AY Sbjct: 1091 GELRNVHMKFTESGKDGQDITFLYEVGEGVAHRSYGLNVARLANIPSSVLDVAY 1144 >gi|326432823|gb|EGD78393.1| MSH2-Ex5 isoform [Salpingoeca sp. ATCC 50818] Length = 904 Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 232/907 (25%), Positives = 396/907 (43%), Gaps = 89/907 (9%) Query: 45 FYRMGDFYELFFDDALLASRCLGITLTKRGKHLG-KDIPMCGVPVHTANHYIQKLIKI-G 102 F+ D+Y L DDAL ++ + T+ KH G + +P + + ++ L+ I Sbjct: 29 FFDRNDYYTLHGDDALFMAKTVFKTMGVV-KHWGPQKLPSVNMSHMVFENTVKDLLLIKN 87 Query: 103 HRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGT--LTEDQLLSP--TDSNYLMAVAR 158 +R+ + +GNKS + +V+ +PG + ED L + S+ +MAV + Sbjct: 88 YRVQV---------YSTKGNKS-GKWELVKKASPGNTQMFEDILYAGGVNSSSIVMAV-K 136 Query: 159 IRTEW-----AIAWIDISTGIFKIS----TSNHDRLISDIMRIDPREIIFSEKELSHAEY 209 + TE +A+ D++ ++ L + ++++ RE + + + + A Sbjct: 137 LATEGQERVVGLAFCDVTANELRVCEFVDNDQFSNLEALVVQVGARECLITSDKSNPALA 196 Query: 210 K--SLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAA----AA 263 K + E + + F H E + + T + Q++K A A Sbjct: 197 KVAQVVERCNVMVTQRKRSEFQHKDIEQDLGRLLKLEDDQTVSTLPQIDKKHAMDCVNAV 256 Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS--GSREQSLLKTIDYS 321 I Y++ + + + + +D+AA L + T+ G + QSL ++ Sbjct: 257 IKYLELLSNDENFNRFFLLEFNFKQYMRLDAAAVRALSMFPTMGDGGQKSQSLFGLLNRC 316 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T G RL + + PL D KI R + ++ + + + +L+ PD+ R + Sbjct: 317 KTAQGQRLLQQWLKQPLLDVAKIAERHNVVDILTHDDEMRTGLIDVLRRFPDLNRLSKKF 376 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLF----------LKNDLPEELRGAVEKLKKLPQSL 431 + + +D D + + L LK ++L K + + Sbjct: 377 MRKKAQLQDCVQAYDAVLKIPKLTALLSEYHGEHAPLLKALFLDDLADLAVDFAKYKELI 436 Query: 432 EKTLSSMLSDD-----LPTFKRDGGFLRDGADASLDETRSLRDQSKRII--ASLQLKYAE 484 EKT+ D+ P+F D RD D L+ Q ++ AS L Sbjct: 437 EKTIDLAEVDNHQYLIKPSFNEDMQSARDRMD-------ELQGQLPAVLSKASADLGLDA 489 Query: 485 ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLE 544 + +K + N + + T +K L ++ +T+ N +F L + Sbjct: 490 QKTVKLERDSKTNQFHFRVSRTH------EKKLRGSRQYEILETLKNGVKFVNKRLKTIN 543 Query: 545 NRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN--YC 602 L I+ E + + +D+ + V A +D+ ++ A+ E Y Sbjct: 544 EEYVGCYEQYLRIQEEVARKVVEVASGYATPMDDLNCVSAHLDVYVSFAVAGIEAPIPYV 603 Query: 603 RPIID--NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 +P + + +++ RHP VE Q FIAND + ++ + +L ++TGPNM Sbjct: 604 KPTMTPMGEGDLVLRGCRHPCVEV----QDDVNFIANDVRM----NRKTAELQIITGPNM 655 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GGKST++RQ + V++AQ+G +VPA A I + D + +RVG+ D+ G STFM EM+ET Sbjct: 656 GGKSTYIRQIGIAVLLAQIGCFVPAQEASICVCDSVLARVGAGDSQLKGISTFMAEMLET 715 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 ASIL AT S VI+DE+GRGT+T DG +AWA E++ + C L ATHFHELT +S Sbjct: 716 ASILKSATANSLVIIDELGRGTSTYDGFGLAWAISEHVAKHIHCFCLFATHFHELTAMSS 775 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 L N + SN + L+K+ PG+ D S+GI V +LA P V+ A D E Sbjct: 776 ELPNVTNLHVDAMTSNGALTLLYKIKPGVCDRSFGIHVAELADFPEQVVQMAKDKAAELE 835 Query: 841 KLYHHNQKDMRL----YYPEIQTKESKNNLSKNDK-----LFVEKIKCLNLDEMSPLTAL 891 + D E TK +K LS N+K FV+ ++L E P+ L Sbjct: 836 EFAQDGNDDEEANDEGEGQETPTKRAK--LSANEKERALLSFVKHAAQIDL-ERDPVAVL 892 Query: 892 KTLYAVK 898 L A++ Sbjct: 893 NDLRALR 899 >gi|296805561|ref|XP_002843605.1| DNA mismatch repair protein Msh3 [Arthroderma otae CBS 113480] gi|238844907|gb|EEQ34569.1| DNA mismatch repair protein Msh3 [Arthroderma otae CBS 113480] Length = 1134 Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 235/908 (25%), Positives = 406/908 (44%), Gaps = 147/908 (16%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGI------------TLTKR 73 TPM +Q +EIK+ + D+++ ++G ++ + +DA +A++ L I T Sbjct: 223 TPMEKQILEIKNKHLDAVLLIQVGYKFQFYGEDARIAAKVLSIVCIPGKLRFDELTTDPS 282 Query: 74 GKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVR 132 HL + VP+H + ++++L+ G+++ + +Q+E + L+A + R + Sbjct: 283 EAHLTR-FASASVPIHRLHVHVKRLVTAGYKVGVVKQLETAALKAAGDNRNAPFVRKLTN 341 Query: 133 LVTPGTLTEDQL-------LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI--STSN-- 181 + T T ED L P+ + YL+ + + + GI + +T N Sbjct: 342 MYTKATYVEDDAENELSGALEPS-TGYLLCLTESGAKGQGNGEKVQIGIVAVQPATGNVI 400 Query: 182 HDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYY 241 +D MR EI E L H +A + + D S + +++ + Sbjct: 401 YDNFEDGFMR---SEI---ETRLLH------------IAPCELLLVGDLSAATNKLVKHL 442 Query: 242 NITTVDTFGSFSQVE-----KTAAAAAISYIKKTQMVNKPTIGYPERE------------ 284 + + TFG ++E KTAAA A S+I + G PE E Sbjct: 443 SKGRMTTFGDNVRIEQMEKSKTAAAEAHSHISSFYAGKMASTGTPEDERASGLFDQVLKL 502 Query: 285 ---------------------------------DIQSTLFIDSAARSNLEILRTLSG-SR 310 +S + ++ +NLEI + + S Sbjct: 503 PDDVTICLSAMIKHLTEYGLEHVFDLTKYFQSFSARSHMLLNGNTLTNLEIYQNQTDYSS 562 Query: 311 EQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQ--NPILINPIQKIL 368 SL +++ + T G RL + PL D K+ R++++ ++ L + + IL Sbjct: 563 RGSLFWSMNRTRTKFGQRLLRRWVGRPLLDKAKLEERIEAVAELLEPDKSTLTHNLGSIL 622 Query: 369 KSSP-DVPRSLSRLKIGRGEPKDIAVIRDGIRS-GINILNLFLKND-------------- 412 D+ ++L R+ G+ ++ + ++S + ++ D Sbjct: 623 SQVKIDLEKALIRVYYGKCTRPELLTMLKSMQSIAMGFAHVKSPADTGFTSHILSESIAI 682 Query: 413 LPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASL---DETRSLRD 469 LP G V L K+ ++ + DD F R+ + + L L+D Sbjct: 683 LPTIYDGVVAYLNKINEAAAR------KDDKYNFFRESEETEEIGEHRLMIGTIEYELKD 736 Query: 470 QSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTM 529 K I +L K A+ + + Y +EV +S S LKK S + + + Sbjct: 737 HLKSIAETLGKKKAQYVSVAGID--------YLVEVENSQ-STLKKVPASWRKISGTKKV 787 Query: 530 SNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDIS 589 S RF T E++ + S ++F L I + + + Q +A ID Sbjct: 788 S---RFHTPEVVKMMRERDQQKESLAAACDKAFLDLLADISTKYQLFRDCIQALATIDAL 844 Query: 590 IALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNS 649 +L+++A + Y +P + T + GRHP+VEK L ++ ND LS + Sbjct: 845 HSLSVIAAQPGYVKPKYTDETVINISQGRHPMVEKVLIDS----YVPNDTRLST----DE 896 Query: 650 GKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASG 709 + L+TGPNMGGKS+++RQ ALI IM Q+GSYVPA A +G++D +++R+G+ DN+ +G Sbjct: 897 TRALLVTGPNMGGKSSYVRQIALICIMGQIGSYVPAESATLGMLDSVYTRMGAFDNMLAG 956 Query: 710 RSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLA 769 STFMVE+ ETA IL QAT +S VILDE+GRGT+T DG++IA A ++Y+ R L Sbjct: 957 ESTFMVELSETADILKQATPRSLVILDELGRGTSTHDGVAIAQAVLDYMVRNLRSLTLFI 1016 Query: 770 THFHELTDLSKS-----LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGL 824 TH+ L+ L+ + L+ H + D + I FL++V G+A SYG+ V +LA + Sbjct: 1017 THYQNLSRLASTFPAGELRNVHMKFTETGDQGQDITFLYEVGEGVAHRSYGLNVARLANI 1076 Query: 825 PNTVISRA 832 P+ ++ A Sbjct: 1077 PSGILEVA 1084 >gi|182889828|gb|AAI65693.1| Msh2 protein [Danio rerio] Length = 936 Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 184/648 (28%), Positives = 300/648 (46%), Gaps = 64/648 (9%) Query: 285 DIQSTLFIDSAARSNLEILRTLS--GSREQSLLKTIDYSITGAGGRLFAERIASPLTDST 342 D+ + +D+AA L + + S + SL ++ T G RL + I PL D Sbjct: 295 DLNQYMRLDNAAVQALNLFQGSSDDATGTHSLAGLLNKCRTPQGQRLVNQWIKQPLIDKN 354 Query: 343 KINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSG 401 KI RLD + F+++ L Q+ +L+ PD+ R + + +D + + Sbjct: 355 KIEERLDLVETFVEDSELRKSCQEDLLRRFPDLNRMAKKFQRQSSNLQDCYRVYQSVGQL 414 Query: 402 INIL----------NLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGG 451 N++ + L L + K + +E TL D+ + Sbjct: 415 PNVVLALERYSGKHQVLLHAAFISPLNDLISDFSKFQEMIETTL------DMNQVEHHEF 468 Query: 452 FLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEVTSS 508 ++ D +L + R D+S++ + + A E + K +K++ N +GYF VT Sbjct: 469 LVKPSFDPTLSDLRENMDRSEKAMQAALSSAARELGLEAAKTVKLESNAQIGYFFRVTCK 528 Query: 509 SASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNA 568 +K L + +F N RFT +L L T + E +E NA Sbjct: 529 E----EKSLRNNKKFTTLDVQKNGVRFTNSKLSSLNEEYTKSR--------EEYEEAQNA 576 Query: 569 IIEQ--------SESLDNASQVIAIIDISIALAIL--AKEQNYCRPII--DNSTNFIVKD 616 I+++ + + ++VIA +D ++ A++ A + RP I S ++K Sbjct: 577 IVKEIISIAAGYVDPVQTLNEVIAQLDAVLSFAVVSHAAPVPFIRPKILEKGSGRLVLKA 636 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 RHP VE Q FI ND + ++TGP+MGGKST++RQ +IV+M Sbjct: 637 ARHPCVEA----QDEVAFIPNDVTFI----RGEKMFHIITGPSMGGKSTYIRQVGVIVLM 688 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+G +VP A + +VD + +RVG+ D+ G STFM EM+ETA+IL AT S + +D Sbjct: 689 AQIGCFVPCDEAELSVVDCVLARVGAGDSQIKGVSTFMAEMLETAAILRSATEDSLITID 748 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 E+GRGT+T DG +AWA EY+ + L ATHFHELT L++ + N + ++ Sbjct: 749 ELGRGTSTYDGFGLAWAISEYIATRLKSFCLFATHFHELTALAQQVPTVRNLHVTALTTD 808 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 + L+KV G+ D S+GI V +LA P VI+ A + E+ +D+ E Sbjct: 809 STLTMLYKVKKGVCDQSFGIHVAELASFPKHVIANAREKALELEEF-----QDISSVGEE 863 Query: 857 IQTKESKNNLSKND-----KLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 K K + K + + F+ K+K + +D MS + L +KA Sbjct: 864 AGPKAKKRCMEKQEGERIIEAFLAKVKSMPVDGMSDKAVKEELRKLKA 911 >gi|195436947|ref|XP_002066407.1| GK18274 [Drosophila willistoni] gi|194162492|gb|EDW77393.1| GK18274 [Drosophila willistoni] Length = 917 Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 201/711 (28%), Positives = 342/711 (48%), Gaps = 58/711 (8%) Query: 185 LISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISE--SRIADYYN 242 L + I+ + P+E + + E +A K++ E G V V P + + + +R+ + Sbjct: 187 LEATIVLLGPKECLLPQLEGEYASVKTVLERNG-VMVTVPKKSSNDDLLQDLNRLLRFAK 245 Query: 243 ITTVDTFGSFSQVEKTAAAAAISY-IKKTQMVNKP-TIGYPERE--DIQSTLFIDSAARS 298 + G +++ AA A+ IK +VN +G+ E + D++ + +DSAA + Sbjct: 246 GQQEEANG-LKELQMVLAAEALRVAIKYLDLVNDAGNLGHYELKQLDLKRFVHLDSAAVA 304 Query: 299 NLEILR------TLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSIN 352 L I+ + R QS+L +D+ T G RL A+ + PL + +N R + + Sbjct: 305 ALNIMPKPGTHPSQPSYRWQSILGVLDHCRTPQGHRLMAQWVKQPLRSLSLLNDRHNIVQ 364 Query: 353 FFIQNPILINPIQ-KILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKN 411 +++P ++ + LK PD+ +L + +D+ I I IL L+ Sbjct: 365 CLLESPDTLDLLSLDYLKRIPDILMLTKKLMRRKATLQDLFRIYQVILRTPKILKALLEL 424 Query: 412 D-------LPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDET 464 + L + + +E L L Q +E+ + D +R ++ D+ L E Sbjct: 425 EHATVQSVLCDPFKSFLEDLTGLKQMVEQVV------DFEGIERSEYLVKASFDSRLMEL 478 Query: 465 RSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKD 521 + + + LQ K EE + + K+++ LGY +T S+L+K+ Sbjct: 479 QETMSELYSKMERLQSKCNEELDLDGKQQAKLENVAKLGYHFRITLKDDSILRKN--KNY 536 Query: 522 RFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQ 581 R + + RFT+ +L + + E + + + L + + Sbjct: 537 RIV--DVIKGGVRFTSDKLESYAEEFASCRTRYEEQQQSIVEEIIQVAVGYAAPLTSLNN 594 Query: 582 VIAIIDISIALAILAKEQN--YCRPII--DNSTNFIVKDGRHPIVEKTLKQQSSKPFIAN 637 +A +D ++ A A+ Y RP + + S +++D RHP +E L++ S FIAN Sbjct: 595 ELAQLDCLVSFAAAARSAPTPYIRPQMLEEGSGRLVLEDVRHPCLE--LQEHVS--FIAN 650 Query: 638 DCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLF 697 D +K+ ++++TGPNMGGKST++R V+MA +G++VP S A I +VD + Sbjct: 651 SVDF----EKDVCNMFIITGPNMGGKSTYIRSVGTAVLMAHVGAFVPCSKAIISMVDSIL 706 Query: 698 SRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEY 757 RVG++DN+ G STFMVEMIET+ I+ AT++S VI+DE+GRGT+T +G IAW+ E+ Sbjct: 707 GRVGASDNIIKGLSTFMVEMIETSGIIRTATDKSLVIIDELGRGTSTYEGCGIAWSIAEH 766 Query: 758 LHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQ 817 L + +C L ATHFHE+T L+ +L N + L++V PG + S+GIQ Sbjct: 767 LAKETKCFTLFATHFHEITKLADNLSTVKNCHMAAVADTTNFTLLYQVKPGCMEKSFGIQ 826 Query: 818 VGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLSK 868 V +LA P V+ A ++ FE H +K QTK K L K Sbjct: 827 VARLANFPEHVVQNAQEVYHEFED--EHAEK---------QTKADKELLDK 866 >gi|239611022|gb|EEQ88009.1| DNA mismatch repair protein msh6 [Ajellomyces dermatitidis ER-3] Length = 1170 Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 226/867 (26%), Positives = 391/867 (45%), Gaps = 92/867 (10%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P +QY EIK D++VF++ G FYEL+ +DA + + + LT R ++ M G Sbjct: 284 SPFEKQYWEIKQKFWDTVVFFKKGKFYELYENDATIGHQLFDLKLTDR-----VNMRMVG 338 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL--EAKKRGNKS---------LVRRNVVRLV 134 VP + +H+ + + G +IA +Q ES L E +++ K+ ++RR + ++ Sbjct: 339 VPEMSLDHWANQFVAKGFKIARVDQSESALGKEMREKQGKTNGTPGKQDKIIRRELACVL 398 Query: 135 TPGTLTEDQLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFKISTSNHD----RLI 186 T GTL + +L S Y +A+ + IA++D +TG F ++ D + Sbjct: 399 TSGTLVDGSMLQDDMSTYCVAIKEALVNDLPAFGIAFVDTATGQFYLAEFIDDVDMTKFE 458 Query: 187 SDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA---QPNVFF---DHSISESRIADY 240 + + + P+E++ + +S + L G + +P F D ++ E ++Y Sbjct: 459 TFVAQTRPQELLLEKSVMSTKALRILKNNTGPTTLWNYLKPCKEFWEADITVRELDASNY 518 Query: 241 YNITTVDTFGSFSQVEK---------TAAAAAISYIKKTQMVNK-PTIG-YPEREDIQ-- 287 + D ++ + + +A A + Y++ ++ TIG + + I+ Sbjct: 519 FVSDDGDNIEAWPEALRHARDKEFVMSAFGALVQYLRMLKIERDLITIGNFTWYDPIKKA 578 Query: 288 STLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINT 346 ++L +D NLEI + G +E +L + ++ T G R+F + + PL D+ KIN Sbjct: 579 TSLVLDGQTLINLEIFSNSFDGGQEGTLFQLLNRCTTPFGKRMFKQWVCHPLMDTKKINA 638 Query: 347 RLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILN 406 RLD+++ + + N L PD+ R +SR+ + +D + +G I+ Sbjct: 639 RLDAVDALNADRSIQNQFSSQLTKMPDLERLISRVHARSCKAQDFLRVLEGFEQ-IDYAM 697 Query: 407 LFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFL--RDGADASLDET 464 LK P E G + +L L L + T +D G L G + D + Sbjct: 698 GLLKETGPGE--GVIGQLVASMPDLSGHLQYWKTAFDRTKAKDSGILVPEAGVEEDFDAS 755 Query: 465 RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 + + + L K ++ + + N Y +EV +V K + Sbjct: 756 HDRISEIESDLDQLLKKVRKQLGSNAIVYRDNGKEIYQLEVPIKIKNVPKS-------WD 808 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 RF EL L + A + I E E + A +VIA Sbjct: 809 QMSATKQAKRFYFAELRSLIRELQEAQETHSQIVKEVAGRFYARFDENYSTWLAAVRVIA 868 Query: 585 IIDISIALAILAKEQNY--CRPII--DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCD 640 +D I+LA + Y CRP+ D + ++ RHP + + FI ND Sbjct: 869 QLDCLISLARASSALGYPSCRPVFVDDERSVLEFEELRHPCMLPNVGD-----FIPNDVK 923 Query: 641 LSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRV 700 L NS + LLTG NA VIMAQ+G +VP A + VD++ SR+ Sbjct: 924 LG----GNSPNINLLTG-----------ANAAAVIMAQIGCHVPCKSARLTPVDRVMSRL 968 Query: 701 GSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHE 760 G+ DN+ + +STF VE+ ET IL++AT +S VILDE+GRGT++ DG+++A A + ++ Sbjct: 969 GANDNIFASQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVLHHVAT 1028 Query: 761 TNRCRGLLATHFHELT-------DLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHS 813 G ATH+H LT +++ R H V D + + FL+K+ G+A+ S Sbjct: 1029 HIGALGFFATHYHSLTAEFEGHPEIAPRRMRIH-----VDDEEKRVTFLYKLEDGVAEGS 1083 Query: 814 YGIQVGKLAGLPNTVISRAYDILKTFE 840 +G+ + G+P+ V+ RA K +E Sbjct: 1084 FGMHCASMCGIPDKVVERAEVAAKQWE 1110 >gi|168053439|ref|XP_001779144.1| predicted protein [Physcomitrella patens subsp. patens] gi|162669504|gb|EDQ56090.1| predicted protein [Physcomitrella patens subsp. patens] Length = 956 Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 198/657 (30%), Positives = 321/657 (48%), Gaps = 66/657 (10%) Query: 292 IDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT-GAGGRLFAERIASPLTDSTKINTRLD 349 +D+AA L + + + S + SL ++ + T G G RL + PL D +I RLD Sbjct: 300 LDAAALRALNVTESKTDSNKHFSLFGLMNRTCTQGMGKRLLNRWLKQPLVDVVEITKRLD 359 Query: 350 SINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG------IRSGIN 403 ++ F+++ L ++ L+ PD+ R +S+L+ + +D+ + IR+ + Sbjct: 360 TVQAFVEDLELRQDLRSHLRRMPDIERLVSKLEKRKAGLQDVVRLYQASLRLPLIRTCLE 419 Query: 404 ILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD--DLPTFKRDGGFLRDGADASL 461 + DL E+ G + P L K ++ DL + + D SL Sbjct: 420 KYDGEFSKDLQEKY-GTHLDVWTQPNHLGK-FDGLVEAAVDLEQLQNGEYIISADYDNSL 477 Query: 462 DETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVLKKDLE 518 E ++ RD +R I + + A++ + K+LK+ + G+ +T ++K L Sbjct: 478 QELKTGRDDVERQILKVHQQSADDLGLPAEKSLKLDKSTQYGHVFRITKKEEPKVRKKLN 537 Query: 519 SKDRFIHRQTMSNLTRFTTLELIDLENRITNATN--SALLIELESFEI-LSNAIIEQSES 575 S+ +I +T + +FT +L L + T T S+ EL + + ++ +E S S Sbjct: 538 SQ--YITLETRKDGIKFTNAKLRRLSEQYTKLTEEYSSAQRELVAKVVDVAATFVEASFS 595 Query: 576 --LDNASQVIAIIDISIALAILAKEQN--YCRPIIDNS--TNFIVKDGRHPIVEKTLKQQ 629 + ++A +D+ ++ A LA Y RP I ++ + I++ RHP VE Q Sbjct: 596 TIFSGVAVLLADMDVLLSFADLASCSPVPYVRPSITSADEGDIILEGSRHPCVEA----Q 651 Query: 630 SSKPFIANDCDLSCPNDKNSGKLW--LLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASY 687 FI+NDC L GK W ++TGPNMGGKSTF+RQ + V+MAQ+G +VP Sbjct: 652 DDVNFISNDCRLV------RGKSWFQIITGPNMGGKSTFIRQVGVNVLMAQVGCFVPCDR 705 Query: 688 AHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDG 747 A I + D +F+RVG+ D G STFM EM+ETASI+ AT +S +I+DE+GRGT+T DG Sbjct: 706 AEISVRDCIFARVGAGDCQLRGVSTFMAEMLETASIIKSATERSLIIIDELGRGTSTYDG 765 Query: 748 LSIAWATIEYLHETNRCRGLLATHFHELTDLSKS---------------LKRFHNATLQV 792 +AWA EYL E R L ATHFHELT L S + +H + + Sbjct: 766 FGLAWAICEYLVEVTRAPTLFATHFHELTALEHSNSPPVHGPPRGPLVGIANYH-VSAHI 824 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR- 851 ++ + L+KV G D S+GI V + A P +V+ A E + KD+ Sbjct: 825 DTKSQKLAMLYKVEEGPCDQSFGIHVAEFAHFPESVVELAKQKAAELED-FSDTGKDVSG 883 Query: 852 -LYYPEIQTKESKNNLSKNDKL--------FVEKIKCLNLDEMSPLTALKTLYAVKA 899 L E+ TK + + +DK+ F++++ L +D+MS L A+K+ Sbjct: 884 GLSKDEVGTKRKRVS-GPDDKVLGAGRVRRFLQEMAALPVDKMSREETYAKLKALKS 939 >gi|42565226|ref|NP_566804.3| MSH2 (MUTS HOMOLOG 2); ATP binding / damaged DNA binding / mismatched DNA binding / protein binding [Arabidopsis thaliana] gi|3914056|sp|O24617|MSH2_ARATH RecName: Full=DNA mismatch repair protein Msh2; Short=AtMsh2 gi|2522362|gb|AAB82649.1| MutS homolog 2 [Arabidopsis thaliana] gi|2522364|gb|AAB82650.1| MutS homolog 2 [Arabidopsis thaliana] gi|2547236|gb|AAB81282.1| DNA mismatch repair protein MSH2 [Arabidopsis thaliana] gi|11994116|dbj|BAB01119.1| DNA mismatch repair protein MSH2 [Arabidopsis thaliana] gi|332642591|gb|AEE76112.1| DNA mismatch repair protein Msh2 [Arabidopsis thaliana] Length = 937 Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 219/718 (30%), Positives = 352/718 (49%), Gaps = 67/718 (9%) Query: 160 RTEWAIAWIDISTGIFKIST----SNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFET 215 R +A++D++ + ++ S L S ++ + +E IF + E KSL+++ Sbjct: 155 RCVIGMAYVDLTRRVLGLAEFLDDSRFTNLESSLIALGAKECIFPAESGKSNECKSLYDS 214 Query: 216 LGNVAVA----QPNVFFDHSI-SESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKT 270 L AV + + F + S+ + NI V S + A A +S+ Sbjct: 215 LERCAVMITERKKHEFKGRDLDSDLKRLVKGNIEPVRDLVSGFDLATPALGALLSF--SE 272 Query: 271 QMVNKPTIG--YPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT-GAG 326 + N+ G R DI + +DSAA L ++ + + + + SL ++ + T G G Sbjct: 273 LLSNEDNYGNFTIRRYDIGGFMRLDSAAMRALNVMESKTDANKNFSLFGLMNRTCTAGMG 332 Query: 327 GRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRG 386 RL + PL D +I TRLD + F++ L +++ LK DV R L L+ RG Sbjct: 333 KRLLHMWLKQPLVDLNEIKTRLDIVQCFVEEAGLRQDLRQHLKRISDVERLLRSLERRRG 392 Query: 387 EPKDIAVIRDGIRSGINILNLFLKNDLPE---ELRGAVEK--LKKLPQ-SLEKTLSSMLS 440 + I + +S I + F+K + + E + + LKKL S + L + Sbjct: 393 GLQHIIKL---YQSTIRLP--FIKTAMQQYTGEFASLISERYLKKLEALSDQDHLGKFI- 446 Query: 441 DDLPTFKRDGGFLRDGA---DASLD-ETRSLRDQSKRI---IASLQLKYAEETKI---KN 490 DL D L +G +S D + SL+DQ + + I L K A E + K Sbjct: 447 -DLVECSVDLDQLENGEYMISSSYDTKLASLKDQKELLEQQIHELHKKTAIELDLQVDKA 505 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 LK+ G+ +T ++K L ++ FI +T + +FT +L L ++ + Sbjct: 506 LKLDKAAQFGHVFRITKKEEPKIRKKLTTQ--FIVLETRKDGVKFTNTKLKKLGDQYQSV 563 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKE--QNYCRPIIDN 608 + + E + + + SE ++ + +++ +D+ ++ A LA YCRP I + Sbjct: 564 VDDYRSCQKELVDRVVETVTSFSEVFEDLAGLLSEMDVLLSFADLAASCPTPYCRPEITS 623 Query: 609 S--TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLW--LLTGPNMGGKS 664 S + +++ RHP VE Q FI NDC L GK W ++TGPNMGGKS Sbjct: 624 SDAGDIVLEGSRHPCVEA----QDWVNFIPNDCRLM------RGKSWFQIVTGPNMGGKS 673 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 TF+RQ +IV+MAQ+GS+VP A I I D +F+RVG+ D G STFM EM+ETASIL Sbjct: 674 TFIRQVGVIVLMAQVGSFVPCDKASISIRDCIFARVGAGDCQLRGVSTFMQEMLETASIL 733 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS--- 781 A+++S +I+DE+GRGT+T DG +AWA E+L + R L ATHFHELT L+++ Sbjct: 734 KGASDKSLIIIDELGRGTSTYDGFGLAWAICEHLVQVKRAPTLFATHFHELTALAQANSE 793 Query: 782 -------LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 + FH + + + + L+KV PG D S+GI V + A P +V++ A Sbjct: 794 VSGNTVGVANFH-VSAHIDTESRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVALA 850 >gi|113204903|gb|ABI34185.1| RE64551p [Drosophila melanogaster] Length = 917 Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 192/690 (27%), Positives = 334/690 (48%), Gaps = 45/690 (6%) Query: 185 LISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISE--SRIADYYN 242 L + ++ + P+E + E ++ K+L + G V + P D+ + + +R+ + Sbjct: 188 LEATVVLLGPKECLLPSIEGEYSAVKTLLDRNG-VMITMPKKSGDNDLLQDLNRLLRFAK 246 Query: 243 ITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKP-TIGYPE--REDIQSTLFIDSAARSN 299 D G + A+ A + IK +VN +G+ E + D+ + +DSAA + Sbjct: 247 GQQEDATGLKELQLQLASNALKTAIKYLDLVNDAGNLGHYEIKQLDLNRFVHLDSAAVAA 306 Query: 300 LEILR------TLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINF 353 L I+ ++ R QS+L +D+ T G RL + + PL +N R + + Sbjct: 307 LNIMPKPGTHPSMPSYRWQSVLGVLDHCRTPQGHRLMGQWVKQPLRSRNILNDRHNIVQC 366 Query: 354 FIQNPILINPIQ-KILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF--LK 410 +++P + + LK PD+ ++ + +D+ I I IL + L Sbjct: 367 LLESPDTMETLSLDYLKRIPDILMLTKKIMRRKANLQDLFRIYQVILRTPKILKVLHELD 426 Query: 411 NDLPEELRGA-----VEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETR 465 N E + A ++ L L Q +E+ + D +R ++ D+ L E + Sbjct: 427 NSTIESVICAPFKSFLKDLTGLKQMVEQVV------DFEAIERGEYLVKASFDSRLMELQ 480 Query: 466 SLRDQSKRIIASLQLKYAEETKI--KN-LKIKHNNNLGYFIEVTSSSASVLKKDLESKDR 522 + + + LQ K ++E + KN +K++ LG+ +T SVL+K+ R Sbjct: 481 QMMTELYSKMEELQFKCSQELNLDGKNQVKLESVAKLGHHFRITVKDDSVLRKN--KNYR 538 Query: 523 FIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQV 582 + + RFT+ +L + + +L E + + + + L + Sbjct: 539 IV--DVIKGGVRFTSDKLEGYADEFASCRTRYEEQQLSIVEEIIHVAVGYAAPLTLLNNE 596 Query: 583 IAIIDISIALAILAKEQN--YCRPII--DNSTNFIVKDGRHPIVEKTLKQQSSKPFIAND 638 +A +D ++ AI A+ Y RP + + + +++D RHP +E Q FIAN Sbjct: 597 LAQLDCLVSFAIAARSAPTPYVRPKMLEEGARELVLEDVRHPCLE----LQEHVNFIANS 652 Query: 639 CDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFS 698 D K ++++TGPNMGGKST++R V+MA +G++VP S A I +VD + Sbjct: 653 VDFK----KEECNMFIITGPNMGGKSTYIRSVGTAVLMAHIGAFVPCSLATISMVDSILG 708 Query: 699 RVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYL 758 RVG++DN+ G STFMVEMIET+ I+ AT++S VI+DE+GRGT+T +G IAW+ E+L Sbjct: 709 RVGASDNIIKGLSTFMVEMIETSGIIRTATDKSLVIIDELGRGTSTYEGCGIAWSIAEHL 768 Query: 759 HETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQV 818 + +C L ATHFHE+T L+++L N + + L++V G+ + S+GIQV Sbjct: 769 AKETKCFTLFATHFHEITKLAETLSTVKNCHMAAVADADDFTLLYQVRSGVMEKSFGIQV 828 Query: 819 GKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 +LA P V+ A ++ FE + QK Sbjct: 829 ARLANFPEHVVQNAQEVYNEFEDEHVDKQK 858 >gi|145479585|ref|XP_001425815.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124392887|emb|CAK58417.1| unnamed protein product [Paramecium tetraurelia] Length = 1108 Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 228/913 (24%), Positives = 409/913 (44%), Gaps = 145/913 (15%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 T M+Q+ + KS N D ++F+++G FYELF++DA + ++ L + R H G Sbjct: 228 TKCMQQFWKYKSENFDKIIFFKLGKFYELFYEDAYIGNKYLDLNWMGRKMH-------TG 280 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR---------GN-KSLVRRNVVRLVT 135 P + Y L++ G+++ I +Q E+P + +R GN +V+R+V ++T Sbjct: 281 FPEKAVHKYKALLLEYGYKVVIVDQTETPEQMNQRVAQNKKAGVGNTDKIVQRSVSEILT 340 Query: 136 PGT------------------LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI 177 GT + ++LS T Y MA+ +T IS + Sbjct: 341 KGTYLYEEGESQMNLDEKVLLVIRKKILSNTIEEYGMAILERQTN------TISLAFIEN 394 Query: 178 STSNHDRLISDIMRIDPREIIFSE----------KELSHAEYKSLFETLGNVAVAQPNVF 227 N++ L + ++ + P E + K +S + KS+ + ++ ++ N Sbjct: 395 RDKNYESLKTLLLHMRPVETVIDSNNLPSFDPITKMISGSVIKSV---ISHITASKDN-- 449 Query: 228 FDHSISESRIADYYN--ITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIG------ 279 +D + R+ YY + F +QV A +Y+ + ++++ +G Sbjct: 450 WDEKKALFRLEQYYQNGLPAAIKFYKNNQVVLQALNGLFTYLNQILILDR-VLGCAQFKL 508 Query: 280 YPEREDIQSTLFIDSAARSNLEILRTLS--GSREQSLLKTIDYSITGAGGRLFAERIASP 337 Y E +Q + +DS A +LEIL+T + ++ SL ++ ++T G RL + +P Sbjct: 509 YDEEFSLQQCMILDSQAIYHLEILQTTNQVDKKDFSLFGVLNKTVTPGGHRLLRRWVCAP 568 Query: 338 LTDSTKINTR----LDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAV 393 L +I R D NF + + I K PD R SR+ + + AV Sbjct: 569 LYQIDQIRERQTMVCDISNFRKERDLFRQSI----KQFPDFERRCSRIYEYSIKTESKAV 624 Query: 394 IRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFL 453 + + L F +L + LR A +++ Q S L + + T++ DGG L Sbjct: 625 FYENLSE--QRLKEF--KNLTKSLRLAQQEIALFGQYKINFRSERLRN-MMTYEADGGLL 679 Query: 454 RDGADASLDETRSL----RDQSKRI--------------IASLQL------KYAEETKIK 489 + LDE +++ K + +A ++L Y ++ IK Sbjct: 680 PN-VKEQLDEFEQYIIWEKEKDKEVPKPVTGVLESYDQSVAEVELVEQKLDSYLQQ--IK 736 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQ---------TMSNLTRFTTLEL 540 K+N+N+ Y + + + ++E D + + + R+ T E+ Sbjct: 737 RKLFKNNSNIQY-------AHAKFRYEIEIPDELVQKSKPEDFEFTSSRQGYKRYLTQEI 789 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSES----LDNASQVIAIIDISIALAILA 596 DL + A + + + N I + S D+ +++ +D +L++ Sbjct: 790 KDLVTELEQAEET----KKQQLTAFGNFIFKHFHSNQHVWDSLIKILNELDALCSLSVYG 845 Query: 597 --KEQNYCRP-IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLW 653 E P + ++K+G+HP + ++ F++N D+ + K Sbjct: 846 DTSEGKMTVPKFTTDKIKLVIKEGKHPCL-------TNINFVSNSIDMG----EKLTKFQ 894 Query: 654 LLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTF 713 LLTGPNMGGKST LR ++ ++AQ+G VP + +D++F+R+G+ D L G+STF Sbjct: 895 LLTGPNMGGKSTTLRMVCILAVLAQIGCSVPCEEMELSPIDRIFTRIGAKDYLMEGKSTF 954 Query: 714 MVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFH 773 VE+ ET L T S I DE+GRGT+T DG++IA A + YL +T +CR L ATHF Sbjct: 955 YVELEETLIPLKYGTKNSLFITDELGRGTSTYDGVAIASAVMHYLIKTIQCRVLFATHFR 1014 Query: 774 ELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAY 833 L + +K + N + SN +IFL+++ G + S+GI V K+ G+ +++I +A Sbjct: 1015 ILIEEAKLISEVTNVHMACYISNGKVIFLYRLKEGACEASFGINVAKVVGIEDSIIMKAE 1074 Query: 834 DILKTFEKLYHHN 846 ++ FE N Sbjct: 1075 EMANFFENKVQKN 1087 >gi|171679627|ref|XP_001904760.1| hypothetical protein [Podospora anserina S mat+] gi|170939439|emb|CAP64667.1| unnamed protein product [Podospora anserina S mat+] Length = 925 Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 234/884 (26%), Positives = 411/884 (46%), Gaps = 116/884 (13%) Query: 14 EQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR 73 +Q+D E +R Y + ++ D + + GD+Y +DA +R + T T Sbjct: 13 QQVDDEHGF------IRYYKSLPKVDEDVIRIFDRGDWYTAHGEDANFIARTVYKT-TSV 65 Query: 74 GKHLGKD----IPMCGVPVHTANHYIQK-LIKIGHRIAICEQIESPLEAKKRGNKSLVRR 128 + LGK+ +P + V ++++ L K+G RI I + K Sbjct: 66 VRQLGKNDHTGLPSVTMTVTVFRQFLREALYKLGKRIEIYASPNGRMNWK---------- 115 Query: 129 NVVRLVTPGTL--TEDQLLSPTDSNYLMAVARIRTEWA------IAWIDISTGIFKIST- 179 +V+ +PG L ED+L + ++ +I + + + + D S +S Sbjct: 116 -IVKQASPGNLQDVEDELGGQFEGAPVILAVKITVKASEGRTVGVCFADASVRELGVSEF 174 Query: 180 ------SNHDRLI------SDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVF 227 SN + L+ +M+ID E K+ A+ + + ++ G +P Sbjct: 175 LDNDLYSNFESLVIQLGVKECLMQIDKAE---KNKDPELAKLRQILDSCGIAVSERPAGE 231 Query: 228 FDHSISESRIADYYNITTVDTFGSFSQVE-KTAAAAAISYIKKTQMVNKPT-IGYPE--R 283 F E +A T Q + K A +A + IK +++ P+ G+ + + Sbjct: 232 FGTKDIEQDLARLLKDERSATL--LPQTDLKLAMGSAAALIKYLGVLHDPSNFGHYQLYQ 289 Query: 284 EDIQSTLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDST 342 D+ + +D+AA L ++ G++ SL +++ T G RL ++ + PL D Sbjct: 290 HDLAQFMKLDAAALKALNLMPGARDGAKTMSLYGLLNHCKTPVGSRLLSQWLKQPLMDKA 349 Query: 343 KINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSG 401 +I R + F+ + L +Q+ L+S PD+ R R + + A + D +R+ Sbjct: 350 EIEKRQQLVEVFVNDTELRQTMQEEHLRSIPDLYRLSKRFQ------RKKATLEDVVRAY 403 Query: 402 INILNL-----FLKNDLPEELRGAVE-----KLKKLPQSLEKTLSSMLSD--DLPTFKRD 449 ++ L L+ + E R ++ KL++L SL K L M+ DL + Sbjct: 404 QVVILLPGFLCTLEGVMDEAARDPLDEAYTNKLRELSNSLVK-LQEMVETTVDLDALENH 462 Query: 450 GGFLRDGADASLDETRSLRDQSKRIIASLQLKYAE------ETKIKNLKIKHNNNLGYFI 503 ++ D D R +R + ++ + + +++E + + K + ++++ G+ + Sbjct: 463 EFIIKPDFD---DGLRIIRKRLDKLRSDMDKEFSEAANDLDQERDKKIFLENHKVHGWCM 519 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL------IDLENRITNATNSALLI 557 +T + AS ++ +K R+ T N FTT L D ++ N T S L+ Sbjct: 520 RLTRTEASCIR----NKSRYQECSTQKNGVYFTTKTLQAYRREFDQLSQNYNRTQSGLVN 575 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQ--NYCRPIID--NSTNFI 613 E+ ++E+ V+A +D+ ++LA A+ +Y RP I I Sbjct: 576 EVVGVAASYCPVLEK------LGGVLAHLDVIVSLAHCAENAPVSYARPKIHPRGQGQTI 629 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 + RHP +E Q FI ND L+ ++S ++TGPNMGGKST++RQ +I Sbjct: 630 LTGARHPCME----MQDDVTFITNDVSLT----RDSSSFLIITGPNMGGKSTYIRQIGVI 681 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MAQ+GS+VP A + I D + +RVG++D+ G STFM EM+ETA+IL AT++S + Sbjct: 682 ALMAQIGSFVPCESAELTIFDSILARVGASDSQLKGVSTFMAEMLETANILKSATSESLI 741 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN--ATLQ 791 I+DE+GRGT+T DG +AWA E++ + C L ATHFHELT L++ + N T Sbjct: 742 IIDELGRGTSTYDGFGLAWAISEHIIQQIGCFALFATHFHELTALAEKYPQVQNLHVTAH 801 Query: 792 VS---DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 ++ D + L+K+ PGI D S+GI V +L P+ V+ A Sbjct: 802 ITSDRDVKREVTLLYKLAPGICDQSFGIHVAELVRFPDKVVRMA 845 >gi|67526583|ref|XP_661353.1| hypothetical protein AN3749.2 [Aspergillus nidulans FGSC A4] gi|40740767|gb|EAA59957.1| hypothetical protein AN3749.2 [Aspergillus nidulans FGSC A4] gi|259481704|tpe|CBF75474.1| TPA: DNA mismatch repair protein msh3 (MutS protein homolog 3) [Source:UniProtKB/Swiss-Prot;Acc:Q5B6T1] [Aspergillus nidulans FGSC A4] Length = 1091 Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 227/883 (25%), Positives = 401/883 (45%), Gaps = 110/883 (12%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK---------- 75 TPM +Q IEIK + D+++ +G + F +DA +A++ L I GK Sbjct: 196 TPMEKQVIEIKKKHMDTILLIEVGYKFRFFGEDARIAAKELSIVCIP-GKFRYDEHPSEA 254 Query: 76 HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLV 134 HL + +PV + ++++L+ GH++ + Q+E + L+A + R + + Sbjct: 255 HLDR-FASASIPVQRLHVHVKRLVAAGHKVGVVRQLETAALKAAGDNRNAPFVRKLTNVY 313 Query: 135 TPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDP 194 T T +D + + A A +I T N +++ I+ + P Sbjct: 314 TKSTYIDDI------ESLEGSTAGASGASATGYILCITETNARGWGNDEKVHVGIVAVQP 367 Query: 195 REIIFSEKELSHAEYKSLFET-LGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS 253 E +S ET L ++A + + + S + ++ + + + ++ FG Sbjct: 368 TTGDIVYDEFDDGFMRSEIETRLLHIAPCEMLIVGELSKATEKLVQHLSGSKMNVFGDKV 427 Query: 254 QVE-----KTAAAAAIS-----YIKKTQMVN-----------KPTIGYPEREDI------ 286 +VE KTAAA + S Y +K + + + +G P++ I Sbjct: 428 RVERAPKAKTAAAESHSHVSSFYAEKMKSADAADDEVASNLLQKVLGLPDQVTICLSAMI 487 Query: 287 -----------------------QSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDYSI 322 +S + ++ ++LEI + + S + SL T+D + Sbjct: 488 KHMTEYGLEHVLQLTKYFQHFSSRSHMLLNGNTLTSLEIYQNQTDYSSKGSLFWTLDRTQ 547 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFF--IQNPILINPIQKIL-KSSPDVPRSLS 379 T G R+ + + PL D ++ R++++ +N +++ I+ +L K D+ + L Sbjct: 548 TRFGQRMLRKWVGRPLLDRRQLEDRVNAVEELKDFRNVVMVERIKGLLGKIKHDLEKGLI 607 Query: 380 RLKIGRGEPKDIAVIRDGIRSGIN---ILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 R+ G+ ++ A I +G + I + LP L+ V L K+ + Sbjct: 608 RIYYGKMIAQEFADIESPADTGFSSPAISQAIM--SLPTILKDVVFFLNKINMHAARNDD 665 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 + + G A E R + + + Y I Sbjct: 666 KYEFFREEEETEEISEHKLGIGAVEHELEEHRPVAGEALGKKMVTYVSVAGID------- 718 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 Y +EV ++S ++ + ++ ++RF T E++ + R + AL Sbjct: 719 ----YLVEVENNSPAIKRVPAS----WMKISGTKKVSRFHTPEVVKM-IRQRDQHREALA 769 Query: 557 IELE-SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK 615 + +F L I ++L + Q +A +D ++LA LA + Y +P T V+ Sbjct: 770 AACDKAFLALQAEIATNYQALRDCVQSLATLDCLVSLATLASQPGYVKPEYTEETCIHVE 829 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 GRHP+VE+ L ++ ND +L D + + L+TGPNMGGKS+++RQ ALI I Sbjct: 830 QGRHPMVEQLLLDS----YVPNDINL----DSSKTRALLVTGPNMGGKSSYVRQVALIAI 881 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 M Q+GSYVPA A +G++D +F+R+G+ DN+ +G STFMVE+ ETA IL QAT +S VIL Sbjct: 882 MGQIGSYVPAQAAKLGMLDAVFTRMGAFDNMLAGESTFMVELSETADILKQATPRSLVIL 941 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLK--RFHNATLQVS 793 DE+GRGT+T DG++IA A ++Y+ + R L TH+ L+ + S N ++ S Sbjct: 942 DELGRGTSTHDGVAIAQAVLDYMVRSIRSLTLFITHYQHLSAMVHSFPDGELRNVHMRFS 1001 Query: 794 DSNEG----IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 +S G I FL+++ G+A SYG+ V +LA LP ++ A Sbjct: 1002 ESGTGADEDITFLYEIGEGVAHRSYGLNVARLANLPAPLLEMA 1044 >gi|296034483|gb|ADG85113.1| mismatch repair protein [Solanum lycopersicum] Length = 782 Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 227/814 (27%), Positives = 365/814 (44%), Gaps = 153/814 (18%) Query: 85 GVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 G+ + +QKL+ G+++ EQ+E+ +AK RG+ S++RR +V ++TP T +E + Sbjct: 11 GISESGIDEAVQKLLARGYKVGRMEQLETSEQAKSRGSTSVIRRKLVHVLTPSTTSEGNI 70 Query: 145 LSPTDSNYLMAVARIRTEWA-------IAWIDISTGIFKISTSNHDR----LISDIMRID 193 P D+ +L+AV E A++D + + + D L + +M++ Sbjct: 71 -GP-DAVHLLAVKETCKELGNGSTTIGFAFVDCAALKVWVGSVEDDASCAALEALLMQVS 128 Query: 194 PREIIFSEKELSHAEYKSL--FETLGNVAV----AQPNVFFDHSISESRIADYYNIT--- 244 P+E+IF+ + LS K+L + + G A QP F + + + ++ ++ Sbjct: 129 PKEVIFNARGLSKDAQKALKKYSSTGPAAPLLSPVQPGADF---VDPAEVKNFLDLKGYF 185 Query: 245 --TVDTF-----GSFSQVEKTAAAAAISYIKKTQM----VNKPTIGYPEREDIQSTLFID 293 + + + G V A + ++++++ + N + Y E + L +D Sbjct: 186 KRSCNKWDHAFDGEDHDVALCALGSLVNHLERLMLNEVLHNGDILSY---EVYKGCLKMD 242 Query: 294 SAARSNLEILRT-LSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSIN 352 NLEI + GS +L + +D +T G RL + I PL D KIN RLD ++ Sbjct: 243 GQTLVNLEIFNNNVDGSPSGTLYRYLDNCVTLPGKRLLRKWICHPLKDVEKINHRLDVVD 302 Query: 353 FFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKND 412 + N L + L+ PD L RL +GR ++ I+S +L Sbjct: 303 KLVDNATL--STAQYLRKLPD----LDRL-LGR--------VKASIQSSEALL------- 340 Query: 413 LPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSK 472 LP L GA +L + F G L G LD R L Q + Sbjct: 341 LP--LIGA----------------KILKQRIKVF----GLLVKGLRVGLDLLRLL--QKE 376 Query: 473 RIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNL 532 + ASL K+ +L + +N D+F L Sbjct: 377 CLTASL-------AKVVSLPVLDGDN--------------------GLDKF--------L 401 Query: 533 TRFTTLELIDLEN-RITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIA 591 T+F D N + NAT+ + E+ IL IE++ I+ +D+ + Sbjct: 402 TQFEAAIDSDFPNFQDHNATD----FDTETLSILMELFIEKATEWSQLIYAISCVDVLRS 457 Query: 592 LAILAKEQN--YCRPII------------DNSTNFIVKDGRHPIVEKTLKQQSSKPFIAN 637 +I AK + CRP+I + +K HP L + P + N Sbjct: 458 FSITAKFSSGVMCRPVILPLSKPSNICNDTGGSTLNIKGLWHPYA---LGESGGLP-VPN 513 Query: 638 DCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLF 697 D L+ + + LLTGPNMGGKST LR + L VIMAQ+G YVP + +VD +F Sbjct: 514 DLHLAGNTNIRYPRTLLLTGPNMGGKSTLLRASCLAVIMAQLGCYVPGETCVLSLVDIIF 573 Query: 698 SRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEY 757 +R+G+ D + +G STF +E ETAS+L AT S V+LDE+GRGT+T DG +IA+A + Sbjct: 574 TRLGATDRIMTGESTFFIECTETASVLQNATYNSLVLLDELGRGTSTFDGYAIAYAVFRH 633 Query: 758 LHETNRCRGLLATHFHELTD---------LSKSLKRFHNATLQVSDSNEGIIFLHKVIPG 808 L ET CR L ATH+H LT L F + S + + ++FL+++ G Sbjct: 634 LVETVNCRLLFATHYHPLTKEFASHPHVALQHMACSFKLKSQSSSPTEQELVFLYRLTSG 693 Query: 809 IADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 SYG+QV +AG+P TV+ A + +K+ Sbjct: 694 ACPESYGMQVALMAGIPKTVVESALSAAQVMKKM 727 >gi|321250171|ref|XP_003191714.1| DNA mismatch repair protein MSH2 [Cryptococcus gattii WM276] gi|317458181|gb|ADV19927.1| DNA mismatch repair protein MSH2, putative [Cryptococcus gattii WM276] Length = 964 Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 186/591 (31%), Positives = 286/591 (48%), Gaps = 67/591 (11%) Query: 283 REDIQSTLFIDSAARSNLEIL---RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLT 339 R D+ + +D++A L ++ + L G+R S+ ++ T G RL + PL Sbjct: 307 RHDLSQYMKLDASALKALNLMPNPQELGGNRNMSIYGLLNRCKTSQGTRLLGRWLKQPLV 366 Query: 340 DSTKINTRLDSINFFIQNPILINPIQ-KILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 + +I R + F+++ + IQ K LK PD R + +D+ + + Sbjct: 367 NRHEIIQRQTMVEVFVEDSVNRQSIQTKYLKQMPDFHRISKKFHKRVAGLEDVVRVYQAV 426 Query: 399 RSGINILNLFLKNDLPEE-LRGAVEK--LKKLPQSLEK--TLSSMLSDD----------- 442 + + + + PE R +E+ LK L + +EK SSM+ D Sbjct: 427 QLLPGLQEILENANTPEPGARDLIEEIWLKPLREHIEKLGNYSSMVEDTIDLDELANHNY 486 Query: 443 --LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 LPT D L+ D LD L D+ +R+ L L K L ++++ Sbjct: 487 VILPTIDED---LQRHRDELLDVRDQLDDEHRRVGNDLGLDID-----KKLHLENHQVYK 538 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLE------NRITNATNSA 554 Y +T + AS+++ +K +I T + T FTT L L + Sbjct: 539 YSFRITKAEASLIR----NKKEYIDLATQKSGTIFTTKTLKALSEEYFRLQELYEKQQRH 594 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN--YCRPII--DNST 610 L+ E+ S ++E LDN +IA +D+ +++A ++ E Y +PI+ + Sbjct: 595 LVKEVVSIAASYTPVLEM---LDN---MIAAVDVIVSMAHVSSEAPIPYVKPILTEKGTG 648 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 + +V RHP +E Q FI ND ++ K + +LTGPNMGGKST++RQ Sbjct: 649 DVVVLGARHPCLEV----QDDIVFIPNDHEMR----KGDSEFIILTGPNMGGKSTYIRQI 700 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 +I +MAQ+G +VPA+ A + I D + +RVG+ DN G STFM EM+ETA+IL AT Sbjct: 701 GVIALMAQVGCFVPATEAQLPIFDCILARVGAGDNQLKGVSTFMAEMLETATILRSATKD 760 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS---LKRFHN 787 S +I+DE+GRGT+T DG +AWA EY+ E C L ATHFHELT LS+ +K H Sbjct: 761 SLIIIDELGRGTSTYDGFGLAWAISEYIAEKIHCFCLFATHFHELTTLSEKNPHVKNLHV 820 Query: 788 ATLQVSDSNEG------IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 L EG I L++V GI D S+GI V +LA P +V+ A Sbjct: 821 EALVQDKDGEGGGKERDITLLYQVKEGICDQSFGIHVAELANFPESVVKLA 871 >gi|238878303|gb|EEQ41941.1| hypothetical protein CAWG_00132 [Candida albicans WO-1] Length = 1214 Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 227/869 (26%), Positives = 403/869 (46%), Gaps = 84/869 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 T +QY +IKS +++VF++ G FYEL+ +DA++A+ + + G+ ++ + G Sbjct: 316 TAFEKQYWQIKSKMWNTVVFFQKGKFYELYENDAVIANTQFDLKIAGGGR---ANMKLAG 372 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKS----LVRRNVVRLVTPGTLTE 141 +P + ++ ++ I G+++A EQ ES L + RG + ++ R + ++T GTLT Sbjct: 373 IPEMSFEYWAKEFISHGYKVAKVEQKESMLVKQMRGGATKEEKIIERELKGILTAGTLTN 432 Query: 142 DQLLSPTDSNYLMAVARIRTE-----WAIAWIDISTGIFKISTSNHD----RLISDIMRI 192 ++S + Y +++ E + +A++D +T + D +L + I +I Sbjct: 433 LDMISNDMATYCLSIKEEDKEDGTKTFGVAFVDTATSELNFIELDDDAECTKLDTLITQI 492 Query: 193 DPREIIFSEKELSHAEYKSL-FETLGNVAVAQP----NVFFDHSISESRI--ADYYNITT 245 +P+EII + L K L F T + + F+D+ I+ ++ A YY+ Sbjct: 493 NPKEIICEKGNLCQIATKILKFCTHSDHQIWNALNPITEFWDYDIALEQLVKAKYYDAEN 552 Query: 246 VDTFGSFSQV-------EKTAAAAAISYIKKTQMVNKPT----IG----YPEREDIQSTL 290 +D + ++ +V + A A + +M+ T +G Y + S + Sbjct: 553 LDDYSNYPKVLVDFKENHQVAFNAFGGLLYYLKMLKLDTSIMSLGNIHEYHISRNSASHM 612 Query: 291 FIDSAARSNLEILRTLS-GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLD 349 +D +NLEIL S G+ + +L K ++ + T G R + + PL +IN R D Sbjct: 613 ILDGVTLNNLEILNNTSDGTTKGTLFKLVNRATTSFGKRQLQKWVLHPLFKVDEINQRYD 672 Query: 350 SINFFIQNPILINPI-QKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF 408 S+++ + + + + I Q L + PD+ R L+R+ G + +D + + S + + Sbjct: 673 SVDYLMNDGLELRSILQDTLANIPDLERLLARVHGGTLKFRDFLKVIESFESIAGVSSKL 732 Query: 409 LKNDLPEELRGAVEK-LKKLPQSLEKTLSSMLSD--DLPTFKRDGGFLRDGADASLDETR 465 + D G + K LK P + + L D D K D G D D ++ Sbjct: 733 V--DFTNVESGMLYKYLKSFPHEM-RELIQQWEDAFDREQAKNDIIVPSAGTDEEFDNSQ 789 Query: 466 SLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIH 525 + + K + L +Y K + + + + Y IEV L+ + Sbjct: 790 ASMEDLKTQLDKLLKEYKRTYKSQEICYRDSGKEIYLIEVPFK--------LKVPGDWKQ 841 Query: 526 RQTMSNLTRFTTLELIDL------ENRITNATNSALLIEL-ESFEILSNAIIEQSESLDN 578 + S + R+ + E+ L + + L I + E F+ N ++ Sbjct: 842 MGSTSKVKRYYSPEVETLAKELRGQQELHKMVCDTLKIRMYEKFDKHYNVWMQ------- 894 Query: 579 ASQVIAIIDISIALAILAKEQNY--CRP-IIDNSTNFI-VKDGRHPIVEKTLKQQSSKPF 634 Q IA ID + L ++ Y CRP +I+ I K+ RHP S+K F Sbjct: 895 VIQTIANIDCLLTLTKASETIGYPSCRPKLIEADKGCINFKELRHPCF------VSTKEF 948 Query: 635 IANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVD 694 I ND L + LLTG N GKST +R AL +I++Q+G Y+PA A + VD Sbjct: 949 IPNDVQLGG----DEPHFGLLTGANAAGKSTLMRTTALAIILSQIGCYIPAESAELTPVD 1004 Query: 695 KLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWAT 754 ++ +R+G+ DN+ G+STF VE+ ET IL+ AT +S VILDE+GRG ++ DG +IA + Sbjct: 1005 RIMTRLGANDNILQGKSTFFVELSETKKILSNATPRSLVILDELGRGGSSSDGFAIAESV 1064 Query: 755 IEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ--VSDSNEGIIFLHKVIPGIADH 812 + +L + G ATH+ L K+ + + V + I FL+K+ G A Sbjct: 1065 LHHLATHVQSLGFFATHYGTLGLSFKTHPQIKQLRMGIVVDSGSRNITFLYKLETGTAPK 1124 Query: 813 SYGIQVGKLAGLPNTVISRAYDILKTFEK 841 S+G+ V + G+P+ ++ A K +E+ Sbjct: 1125 SFGMNVASMCGIPDAIVDNAEIAAKAYEQ 1153 >gi|241950279|ref|XP_002417862.1| mismatch DNA repair protein, mutS homologue, putative [Candida dubliniensis CD36] gi|223641200|emb|CAX45579.1| mismatch DNA repair protein, mutS homologue, putative [Candida dubliniensis CD36] Length = 1222 Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 220/874 (25%), Positives = 403/874 (46%), Gaps = 94/874 (10%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 T +QY +IKS +++VF++ G FYEL+ +DA++A+ + + G+ ++ + G Sbjct: 324 TAFEKQYWQIKSKMWNTVVFFQKGKFYELYENDAVIANTQFDLKIAGGGR---ANMKLAG 380 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKS----LVRRNVVRLVTPGTLTE 141 +P + ++ ++ I G+++A EQ ES L + RG + ++ R + ++T GTLT Sbjct: 381 IPEMSFEYWAKEFISHGYKVAKVEQKESMLVKQMRGGATKEEKIIERELKGILTGGTLTN 440 Query: 142 DQLLSPTDSNYLMAVARIRTE-----WAIAWIDISTGIFKISTSNHD----RLISDIMRI 192 ++S + Y +++ E + +A++D +T + D +L + I +I Sbjct: 441 LDMISNDMATYCLSIKEEEKEDGTKTFGVAFVDTATSELNFIELDDDAECTKLDTLITQI 500 Query: 193 DPREIIFSEKEL-----------SHAEYKSLFETLGNVAVAQPNVFFDHSISESRI--AD 239 +P+EII ++ L +H++++ ++ L + F+D+ I+ ++ A Sbjct: 501 NPKEIICEKRNLCQIATKILKFCAHSDHQ-IWNALNPIT-----EFWDYDIALEQLVKAK 554 Query: 240 YYNITTVDTFGSFSQV--------EKTAAAAAISYIKKTQMVNKPTI-------GYPERE 284 YY+ +D + + +V + T A + +I Y Sbjct: 555 YYDAENLDDYSKYPKVLVDFKDNHQVTFNAFGGLLYYLKLLKLDTSIMSLGNIHEYHISR 614 Query: 285 DIQSTLFIDSAARSNLEILRTLS-GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTK 343 + S + +D +NLEIL S G+ + +L K ++ + T G R + + PL + Sbjct: 615 NSASHMILDGITLNNLEILNNTSDGTTKGTLFKLVNRATTSFGKRQLQKWVLHPLFKVDE 674 Query: 344 INTRLDSINFFIQNPILINPI-QKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGI 402 IN R D++++ + + + + I Q L + PD+ R L+R+ G +D + + S Sbjct: 675 INQRYDAVDYLMNDGLELRSILQDTLANIPDLERLLARVHGGTLRFRDFLKVIESFESIA 734 Query: 403 NILNLFLKNDLPEELRGAVEK-LKKLPQSLEKTLSSMLSD-DLPTFKRDGGFLRDGADAS 460 ++ + + D G + K LK P + + + D K D G D Sbjct: 735 SVSSKLV--DFTNVESGMLYKYLKSFPHEMCELIQQWEDAFDREQAKTDTIVPSPGTDEE 792 Query: 461 LDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESK 520 D +++ + K + L +Y K + + + + Y IEV L+ Sbjct: 793 FDNSQASMEDLKCQLDKLLKEYKRTYKSQEICYRDSGKEIYLIEVPFK--------LKVP 844 Query: 521 DRFIHRQTMSNLTRFTTLELIDLENRITN-------ATNSALLIELESFEILSNAIIEQS 573 + + S + R+ + E+ L + ++ L E F+ N ++ Sbjct: 845 SDWKQMGSTSKVKRYYSPEVETLAKELRGQQELHKMVCDTLRLRMYEKFDKHYNVWMQ-- 902 Query: 574 ESLDNASQVIAIIDISIALAILAKEQNY--CRP-IIDNSTNFI-VKDGRHPIVEKTLKQQ 629 Q IA ID +AL ++ Y CRP +I+ I K+ RHP Sbjct: 903 -----VIQTIANIDCLLALTKASETIGYPSCRPKLIEADKGCIDFKELRHPCF------V 951 Query: 630 SSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAH 689 S+K FI ND L + LLTG N GKST +R AL +I++Q+G Y+PA A Sbjct: 952 STKEFIPNDVQLG----GDQPHFGLLTGANAAGKSTLMRTTALAIILSQIGCYIPAESAE 1007 Query: 690 IGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLS 749 + VD++ +R+G+ DN+ G+STF VE+ ET IL+ AT +S VILDE+GRG ++ DG + Sbjct: 1008 LTPVDRIMTRLGANDNILQGKSTFFVELSETKKILSNATPRSLVILDELGRGGSSSDGFA 1067 Query: 750 IAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ--VSDSNEGIIFLHKVIP 807 IA + + +L + G ATH+ L K+ + + V + + I FL+K+ Sbjct: 1068 IAESVLHHLATHVQSLGFFATHYGTLGLSFKTHPQIKQQRMGIIVDNDSRNITFLYKLET 1127 Query: 808 GIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 G A S+G+ V + G+P+ ++ A K +E+ Sbjct: 1128 GTAPKSFGMNVASMCGIPDEIVDNAEIAAKAYEQ 1161 >gi|327305653|ref|XP_003237518.1| DNA mismatch repair protein Msh3 [Trichophyton rubrum CBS 118892] gi|326460516|gb|EGD85969.1| DNA mismatch repair protein Msh3 [Trichophyton rubrum CBS 118892] Length = 1145 Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 234/902 (25%), Positives = 406/902 (45%), Gaps = 138/902 (15%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK---------- 75 TPM RQ +EIK+ + D+++ ++G Y+ + +DA +A++ L I GK Sbjct: 237 TPMERQIMEIKNKHLDAVLLIQVGYKYQFYGEDARIAAKILSIVCIP-GKLRFDEHPSEA 295 Query: 76 HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLV 134 HL + VP+H + ++++L+ G+++ + +Q+E + L+A + R + + Sbjct: 296 HLTR-FASASVPIHRLHVHVKRLVAAGYKVGVVKQLETAALKAAGDNRNAPFVRKLTNMY 354 Query: 135 TPGTLTEDQL-------LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI--STSN--HD 183 T T ED L P+ + YL+ + + + GI + +T N +D Sbjct: 355 TKATYIEDDAELELSGALEPS-TGYLLCLTESGAKGQGDGEKVQIGIVAVQPATGNVVYD 413 Query: 184 RLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNI 243 MR EI E L H +A + + D S + ++ + + Sbjct: 414 SFEDGFMR---SEI---ETRLLH------------IAPCELLLVGDLSTATDKLVQHLSK 455 Query: 244 TTVDTFGSFSQVE-----KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTL-------- 290 + TFG ++E +TAAA A S+I G E S L Sbjct: 456 GRMTTFGDSVRIEWREKSQTAAAEAHSHISSFYAGKMAATGSAEDAKASSLLDQVLKLPD 515 Query: 291 ---------------------------FIDSAARS----------NLEILRTLSG-SREQ 312 F +ARS NLEI + + S + Sbjct: 516 DVTVCLSAMIKHLTEYGLEHVFDLTKYFQSFSARSHMLLNGNTLMNLEIYQNQTDYSSKG 575 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFI---QNPILINPIQKILK 369 SL +++ + T G RL + PL D K+ R +++ + ++ + N + + Sbjct: 576 SLFWSMNRTRTKFGQRLLRRWVGRPLLDKAKLEERTEAVTELLDSDKSTLTYNLGSTLSQ 635 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAV--EKLKKL 427 D+ ++L R+ G+ ++ + ++S I + +K+ + + E + L Sbjct: 636 VRVDLEKALIRVYYGKCSRPELLTMLKSMQS-IAVSFAHVKSPADSGFKSPILSESIAIL 694 Query: 428 PQSLEKTLSSMLSDDLPTFKRDGG---FLRDGADASLDETR--------SLRDQSKRIIA 476 P + +S + + K+D F + E R L+D K I Sbjct: 695 PTMRDDVVSYLNKINETAAKKDDKYDFFRESEESEEIGEHRLMIGTIEYELKDHLKSIAE 754 Query: 477 SLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFT 536 +L K + + + Y +EV +S ++ K + + R I ++RF Sbjct: 755 TLGKKKVQYVSVAGID--------YLVEVENSQGAL--KKVPASWRKI--SGTKKVSRFH 802 Query: 537 TLELIDL-ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAIL 595 T E++ + R + A + +LS+ I + + + Q +A ID +L+++ Sbjct: 803 TPEVVKMMRERDQQKESLAAACDTAFLRLLSD-ISTKYQLFRDCIQALATIDALHSLSVI 861 Query: 596 AKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLL 655 A + Y +P + T + GRHP+VEK L ++ ND LS + + L+ Sbjct: 862 AAQPGYVKPKYTDDTIINISQGRHPMVEKVLIDS----YVPNDTQLST----DETRALLV 913 Query: 656 TGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMV 715 TGPNMGGKS+++RQ ALI IM Q+GSYVPA A +G++D +++R+G+ DN+ +G STFMV Sbjct: 914 TGPNMGGKSSYVRQIALICIMGQIGSYVPAESATLGMLDAVYTRMGAFDNMLAGESTFMV 973 Query: 716 EMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHEL 775 E+ ETA IL QAT +S VILDE+GRGT+T DG++IA A ++Y+ R L TH+ L Sbjct: 974 ELSETADILKQATPRSLVILDELGRGTSTHDGVAIAQAVLDYMVRNLRSLTLFITHYQNL 1033 Query: 776 TDLSKS-----LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVIS 830 + L+ + L+ H + D + I FL+++ G+A SYG+ V KLA +P ++ Sbjct: 1034 SRLASAFPGGELRNVHMRFTETGDEGQDITFLYEIGEGVAHRSYGLNVAKLANIPTGILE 1093 Query: 831 RA 832 A Sbjct: 1094 VA 1095 >gi|320586961|gb|EFW99624.1| DNA mismatch repair protein [Grosmannia clavigera kw1407] Length = 1228 Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 127/297 (42%), Positives = 174/297 (58%), Gaps = 19/297 (6%) Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E F+ + ++ L + V+ +DI + A LA EQN CRP + T + G Sbjct: 920 EQRVFQAIRETVVRSLVPLRRNAAVLDELDIGTSFARLALEQNLCRPRLHRGTTTAIVGG 979 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPND--------KNSGKLWLLTGPNMGGKSTFLRQ 669 RHP VE L +Q + F NDC + D + G LWL+TGPNM GKSTFLRQ Sbjct: 980 RHPTVEGGLAEQG-RSFARNDCFVRGVEDAAATTATTSSHGSLWLITGPNMAGKSTFLRQ 1038 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 NALI I+AQ+G +VPA A +G+VD LFSRVGSADNL +STFMVEM+ETA IL AT Sbjct: 1039 NALITILAQVGCFVPAEQADLGLVDALFSRVGSADNLFRDQSTFMVEMLETAHILRAATP 1098 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRF---- 785 +SFVI+DEIGRGT DG ++A+A + +L NRCR L ATHFH L +L+ + Sbjct: 1099 RSFVIMDEIGRGTTPEDGTAVAFAALHHLVRVNRCRTLFATHFHGLANLAAAEGMISGGS 1158 Query: 786 HNATLQV------SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 N ++ D G ++H++ G+ S+ ++V ++AG+P I A ++L Sbjct: 1159 SNGPVETYCTDVEEDGRGGFAYVHRLRRGVNRQSHALKVARMAGMPEQAIRVAEEVL 1215 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 100/417 (23%), Positives = 185/417 (44%), Gaps = 54/417 (12%) Query: 41 DSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 + ++ R+G FYE++F+ A L I + + + G +PM G P + +++ L+ Sbjct: 270 NCILLTRVGGFYEMYFEHAQEFGPLLNIKVASKKTNAGP-VPMAGFPFFQLDRFLKILVH 328 Query: 101 -IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMA---- 155 + +AI E+ + K R + R V R+VTPGTL ++ + P +NY+M Sbjct: 329 DLNRYVAISEEFPNSAADKVRSGGLMHDRRVARIVTPGTLIDENFMDPYTNNYVMGIHAD 388 Query: 156 ------------------------VARIRT-EWAIAWIDISTGIFKISTSNHDRLISDIM 190 VA ++ +AW+D+STG F + + S + Sbjct: 389 ADADAPGQSATMPSASSATSSPMTVASPKSVSVGLAWLDLSTGHFYTQATTLSAVGSVLS 448 Query: 191 RIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESR----------IADY 240 R+ PRE++ E+ + LF L + Q V F + ++D+ Sbjct: 449 RVAPREVVLDEQLQLRRDVHPLFPILEDDRQQQQVVTFAPPAEGAEGQASGSSLDSLSDW 508 Query: 241 YNITTVDTFGS----FSQVEKTAAAAAISYIKKT----QMVNKPTIGYPEREDIQSTLFI 292 ++ + S F+ E A + + Y++ M +P + Y ED+Q+ + I Sbjct: 509 AHVLESEIPASDANTFTAPEIAAGSLLLRYVRDRLQGLTMKLQPPVRY---EDVQA-MTI 564 Query: 293 DSAARSNLEILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSI 351 D +LEI +TL G SLL I ++T +G RL E +++P T I R + + Sbjct: 565 DKNTMRSLEIKQTLRDGLFRGSLLHAIRRTVTKSGARLLNEWLSAPSTSLELIEARQNLV 624 Query: 352 NFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF 408 + F+++ L + +L+ S D R + + +GRG+P D+ + + + +I+ L Sbjct: 625 SRFLEDEPLRDDTTLLLRKSYDSHRLVQKFALGRGDPDDLLDLAKTVSATQDIVGLL 681 >gi|226328643|ref|ZP_03804161.1| hypothetical protein PROPEN_02538 [Proteus penneri ATCC 35198] gi|225203376|gb|EEG85730.1| hypothetical protein PROPEN_02538 [Proteus penneri ATCC 35198] Length = 328 Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 138/325 (42%), Positives = 196/325 (60%), Gaps = 17/325 (5%) Query: 575 SLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPF 634 +L +++ +A D+ LA A+ NY RP + T + GRHP+VE+ L S+PF Sbjct: 16 ALQISAEALAETDVLANLAERAESLNYTRPELSEKTGIQIIGGRHPVVEQVL----SEPF 71 Query: 635 IANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVD 694 I+N L+ +L ++TGPNMGGKST++RQ ALI ++A +GS+VPA A IG VD Sbjct: 72 ISNPLQLAPQR-----RLLIITGPNMGGKSTYMRQAALITLLAYIGSFVPAEKALIGPVD 126 Query: 695 KLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWAT 754 ++F+RVG++D+LASGRSTFMVEM ETA+IL+ AT S V++DEIGRGT+T DGLS+AWA Sbjct: 127 RIFTRVGASDDLASGRSTFMVEMTETANILHNATENSLVLMDEIGRGTSTYDGLSLAWAC 186 Query: 755 IEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSY 814 E L + L ATH+ ELT L + L+ N L + + I F+H V G A SY Sbjct: 187 AENLANRIKAMTLFATHYFELTTLPEKLEGTANIHLDAVEHGDTIAFMHSVQEGAASKSY 246 Query: 815 GIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFV 874 G+ V LAG+P VI RA LK E L H ++T + L++ + + Sbjct: 247 GLAVASLAGVPKEVIRRAKQKLKELELLSGHTGAG------HVETSQLM-LLTEAEPSAI 299 Query: 875 E-KIKCLNLDEMSPLTALKTLYAVK 898 E + ++ D ++P AL+ LY +K Sbjct: 300 ELALDKIDPDALTPRQALEQLYHLK 324 >gi|46203402|ref|ZP_00051583.2| COG0249: Mismatch repair ATPase (MutS family) [Magnetospirillum magnetotacticum MS-1] Length = 282 Score = 240 bits (612), Expect = 9e-61, Method: Composition-based stats. Identities = 129/256 (50%), Positives = 172/256 (67%), Gaps = 5/256 (1%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 ++ +TPMM QYIEIK+ NPD L+FYRMGDFYELFF+DA +ASR LGI LTKRGKH G D Sbjct: 27 DIPGATPMMAQYIEIKAANPDCLLFYRMGDFYELFFEDAEIASRALGIVLTKRGKHGGAD 86 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCGVP+ A+ Y+ +LI +GHR+A+C+Q E EAKKRG KS+VRR VVRLVTPGTLT Sbjct: 87 IPMCGVPLERADDYLHRLIALGHRVAVCQQTEDASEAKKRGPKSVVRREVVRLVTPGTLT 146 Query: 141 EDQLLSPTDSNYLMAVAR-----IRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPR 195 ED+LL PT +N L+A+ R R + +A +DISTG F +S + L + I R +PR Sbjct: 147 EDRLLDPTRANLLLAIGRRKVSDSRDAYGLAAVDISTGRFSLSEVDGSELAAAIARHEPR 206 Query: 196 EIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQV 255 EI+ SE + L+ V + + +E RI + + + T+D FG+FS+ Sbjct: 207 EIVLSEAIHADPALAKLWRETSAAVVPLAQGELEPASAERRIREQFGVKTLDGFGAFSRA 266 Query: 256 EKTAAAAAISYIKKTQ 271 E AA A + Y+++TQ Sbjct: 267 EIAAAGAVLLYLERTQ 282 >gi|58259371|ref|XP_567098.1| DNA mismatch repair protein MSH2 [Cryptococcus neoformans var. neoformans JEC21] gi|134107449|ref|XP_777609.1| hypothetical protein CNBA7300 [Cryptococcus neoformans var. neoformans B-3501A] gi|50260303|gb|EAL22962.1| hypothetical protein CNBA7300 [Cryptococcus neoformans var. neoformans B-3501A] gi|57223235|gb|AAW41279.1| DNA mismatch repair protein MSH2, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 965 Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 185/591 (31%), Positives = 288/591 (48%), Gaps = 67/591 (11%) Query: 283 REDIQSTLFIDSAARSNLEIL---RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLT 339 R D+ + +D++A L ++ + L G++ S+ ++ T G RL + PL Sbjct: 308 RHDLSQYMKLDASALKALNLMPNPQELGGNKNMSIYGLLNRCKTSQGTRLLGRWLKQPLV 367 Query: 340 DSTKINTRLDSINFFIQNPILINPIQ-KILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 + +I R + F+++ + IQ K LK PD R + +D+ + + Sbjct: 368 NRHEIIQRQTMVEVFVEDSVNRQSIQTKYLKQMPDFHRISKKFHKRVAGLEDVVRVYQAV 427 Query: 399 RSGINILNLFLKNDLPEE-LRGAVEK--LKKLPQSLEK--TLSSMLSDD----------- 442 + + + D PE R +E+ LK L + +EK SSM+ D Sbjct: 428 QLLPGLQEILENADTPEPGARDLIEEIWLKPLREHIEKLGNYSSMVEDTIDLDELANHNY 487 Query: 443 --LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG 500 LPT D L+ + L+ L D+ +R+ + L L K L ++++ Sbjct: 488 VILPTIDED---LQRYREELLNVRDQLDDEHRRVGSDLGLDID-----KKLHLENHQVYK 539 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLE------NRITNATNSA 554 Y +T + AS+++ +K +I T + T FTT L L + Sbjct: 540 YSFRITKAEASLIR----NKKEYIDLATQKSGTIFTTKTLKALSEEYFRLQELYEKQQRH 595 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN--YCRPII--DNST 610 L+ E+ S ++E LDN +IA +D+ +++A ++ E Y +PI+ + Sbjct: 596 LVKEVVSIASSYTPVLEM---LDN---LIAAVDVIVSMAHVSSEAPIPYVKPILTEKGTG 649 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 + +V RHP +E Q FI ND ++ K + +LTGPNMGGKST++RQ Sbjct: 650 DVVVLGARHPCLE----VQDDIVFIPNDHEMR----KGDSEFIILTGPNMGGKSTYIRQI 701 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 +I +MAQ+G +VPA+ A + I D + +RVG+ DN G STFM EM+ETA+IL AT Sbjct: 702 GVIALMAQVGCFVPATEARLPIFDCILARVGAGDNQLKGVSTFMAEMLETATILRSATKD 761 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS---LKRFHN 787 S +I+DE+GRGT+T DG +AWA EY+ ET C L ATHFHELT LS+ +K H Sbjct: 762 SLIIIDELGRGTSTYDGFGLAWAISEYIAETIHCFCLFATHFHELTSLSEKNSHVKNLHV 821 Query: 788 ATLQVSDSNEG------IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 L EG I L++V GI D S+GI V +LA P +V+ A Sbjct: 822 EALVKDKDGEGGAKERDITLLYQVKEGICDQSFGIHVAELANFPESVVKLA 872 >gi|116180698|ref|XP_001220198.1| hypothetical protein CHGG_00977 [Chaetomium globosum CBS 148.51] gi|88185274|gb|EAQ92742.1| hypothetical protein CHGG_00977 [Chaetomium globosum CBS 148.51] Length = 863 Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 133/311 (42%), Positives = 182/311 (58%), Gaps = 32/311 (10%) Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDG 617 E F L ++ L + V+ +DI+ + A+LA EQ RP + N+ I+ G Sbjct: 533 EQRVFGALRGRVVANLVKLRRNALVLDELDIATSFALLAVEQGLARPALSNAQQTIIVGG 592 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDK--------------------NSGKLWLLTG 657 RHP VE L +Q + F ND L + G++WL+TG Sbjct: 593 RHPTVEGGLAEQG-RTFQKNDLFLGSAPGARAVAAATHDGGGQQQQQQQQSHGRIWLITG 651 Query: 658 PNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEM 717 PNM GKSTFLRQNALI I+AQ+G YVPA YA +GIVD +FSRVGSADNL +STFMVEM Sbjct: 652 PNMAGKSTFLRQNALITILAQIGCYVPADYASLGIVDAIFSRVGSADNLFQDQSTFMVEM 711 Query: 718 IETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTD 777 +ETA+IL QAT +SFVI+DE+GRGT DG ++A+A + +L N+CR L ATHFH + D Sbjct: 712 LETAAILQQATPRSFVIMDEVGRGTTPEDGTAVAFAALHHLVTVNKCRALFATHFHGIAD 771 Query: 778 L-SKSLKRFH----NATL-----QVSDSNEG-IIFLHKVIPGIADHSYGIQVGKLAGLPN 826 L +KS R N T+ V + +G +++HK+ G+ S+ ++V +LAGLP Sbjct: 772 LVAKSGFRLEDGGPNGTIDAYCTDVEEDEQGRFVYVHKLRKGVNRQSHALKVARLAGLPE 831 Query: 827 TVISRAYDILK 837 I A +L+ Sbjct: 832 QAIQVAQQVLQ 842 Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/222 (26%), Positives = 103/222 (46%), Gaps = 24/222 (10%) Query: 41 DSLVFY-RMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLI 99 DS V R+G FYEL+FD A L + + ++ G +PM G P + +++ L+ Sbjct: 158 DSCVLLTRVGGFYELYFDHADEYGPLLNLKVAQKKTSAGP-VPMAGFPFFQLDRFLKILV 216 Query: 100 KIGHR-IAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVAR 158 + +R +AI E+ + K + + R V R+VTPGTL ++ + P +NY+MA+ Sbjct: 217 QDCNRHVAIAEEFPNDPSDKVKSGGLMHTRKVTRIVTPGTLIDENFMDPYANNYVMAIH- 275 Query: 159 IRTEWAIAWIDISTGIFKIS---------TSNHDRLISDIMRIDPREIIFSEKELSHAEY 209 E A++ + G K S T+ RL+++ + P + +E Sbjct: 276 -LPEKAVSDDTMRDGALKGSLLHAIRRTVTTGGARLLNEWLTAPPHPD-------NDSEA 327 Query: 210 KSLFETLGNVAVAQPNVFFDH---SISESRIADYYNITTVDT 248 KSL + +++ QP +H +I E + + I +T Sbjct: 328 KSLSAMVDRISLEQPLKLAEHIRDAIDEEGLVQQHQIKDSET 369 >gi|194857041|ref|XP_001968883.1| GG25117 [Drosophila erecta] gi|190660750|gb|EDV57942.1| GG25117 [Drosophila erecta] Length = 917 Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 192/689 (27%), Positives = 332/689 (48%), Gaps = 43/689 (6%) Query: 185 LISDIMRIDPREIIFSEKELSHAEYKSLFETLG-NVAVAQPNVFFDHSISESRIADYYNI 243 L + ++ + P+E + E +A K+L E G V V + + D +R+ + Sbjct: 188 LEATVVLLGPKECLLPSLEGDYAAVKTLLERNGVMVTVPKKSSANDLLQDLNRLLRFAKG 247 Query: 244 TTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKP-TIGYPE--REDIQSTLFIDSAARSNL 300 D G + A+ A + IK +VN +G+ E + D++ + +DSAA + L Sbjct: 248 QQEDATGLKELQLQLASNALKTAIKYLDLVNDAGNLGHYEIKQLDLKRFVHLDSAAVAAL 307 Query: 301 EILR------TLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFF 354 I+ ++ R QS++ +D+ T G RL + + PL +N R + + Sbjct: 308 NIMPKPGTYPSMPSYRWQSIMGVLDHCRTPQGHRLMGQWVKQPLRSRDILNDRHNIVQCL 367 Query: 355 IQNPILINPIQ-KILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLK--N 411 +++P + + LK PD+ +L + +D+ I I IL + L+ N Sbjct: 368 LESPDTMETLSLDYLKRIPDILMLTKKLMRRKASLQDLFRIYQVILRTPKILKVLLELGN 427 Query: 412 DLPEELRGA-----VEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRS 466 E + A +E L L + +E+ + D +R ++ D+ L E + Sbjct: 428 STIESVICAPFKSFLEDLTGLKEMVEQVV------DFEAIERGEYLVKASFDSRLMELQQ 481 Query: 467 LRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRF 523 + + + L K + + +K++ LG+ +T SVL+K+ R Sbjct: 482 MMTELYSKMEKLLAKCTGDLDLDGKSQVKLETIAKLGHHFRITLKDDSVLRKN--KNYRI 539 Query: 524 IHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVI 583 + + RFT+ +L + + +L E + + + L + + + Sbjct: 540 V--DVIKGGVRFTSDKLEGYSDEFASCRTRYEEQQLSIVEEIIQVAVGYAAPLTSLNNEL 597 Query: 584 AIIDISIALAILAKEQN--YCRPII--DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDC 639 A +D ++ AI A+ Y RP + + + +++D RHP +E L++ S FIAN Sbjct: 598 AQLDCLVSFAIAARSAPTPYVRPKMLEEGARELVLQDVRHPCLE--LQEHVS--FIANSV 653 Query: 640 DLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSR 699 D K ++++TGPNMGGKST++R V+MA +G++VP S A I +VD + R Sbjct: 654 DFK----KEKCNMFIITGPNMGGKSTYIRSVGAAVLMAHVGAFVPCSLATISMVDSILGR 709 Query: 700 VGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLH 759 VG++DN+ G STFMVEMIET+ I+ AT++S VI+DE+GRGT+T +G IAW+ E+L Sbjct: 710 VGASDNIIKGLSTFMVEMIETSGIIRTATDKSLVIIDELGRGTSTYEGCGIAWSIAEHLA 769 Query: 760 ETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVG 819 + +C L ATHFHE+T L+ +L N + + L++V PG+ + S+GIQV Sbjct: 770 KETKCFTLFATHFHEITKLADTLPTVKNCHMAAVADADHFTLLYQVRPGVMEKSFGIQVA 829 Query: 820 KLAGLPNTVISRAYDILKTFEKLYHHNQK 848 +LA P V+ A ++ FE + QK Sbjct: 830 RLANFPEHVVQNAQEVYNEFEDEHVDKQK 858 >gi|195033817|ref|XP_001988769.1| GH11346 [Drosophila grimshawi] gi|193904769|gb|EDW03636.1| GH11346 [Drosophila grimshawi] Length = 918 Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 177/605 (29%), Positives = 300/605 (49%), Gaps = 41/605 (6%) Query: 259 AAAAAISYIKKTQMVNKP-TIGYPERE--DIQSTLFIDSAARSNLEILR------TLSGS 309 AA A IK +VN +G+ E D++ + +DSAA + L I+ T+ Sbjct: 265 AAEALRVAIKYLDLVNDAGNLGHYEMRQLDLKRFVHLDSAAVAALNIMPKPGTHPTMPSY 324 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQ-KIL 368 R QS+L +D+ T G RL ++ + PL +N R + + ++ P ++ + L Sbjct: 325 RWQSILGVLDHCRTPQGHRLMSQWVKQPLRSLDILNDRHNIVQCLLEAPETLDTLSLDFL 384 Query: 369 KSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFL-------KNDLPEELRGAV 421 K PD+ +L + +D+ + I IL L L ++ L ++ + Sbjct: 385 KRIPDILMLTKKLMRRKASLQDLFRVYQVILRTPKILQLLLDLEHSTVQSVLCAPIKSFL 444 Query: 422 EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLK 481 E L L Q +E+ + D ++ ++ D+ L E + + + LQ K Sbjct: 445 EDLTGLKQMVEQVV------DFEAIEKGEYLVKGSFDSRLMELQQTMTELYSKMERLQRK 498 Query: 482 YAEETKI--KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLE 539 +E + K +K+++ LGY T SVL+K+ R + + RFT+ + Sbjct: 499 CCDELDLDSKLIKLENVAKLGYHFRTTLKDDSVLRKN--KNYRIV--DVIKGGVRFTSDK 554 Query: 540 LIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIID--ISIALAILAK 597 L + + + + + + + L + + +A +D +S A A Sbjct: 555 LESYADEFASCRTRYEEQQQSIVDEIIQVAVGYAAPLTSLNNELAQLDCLVSFATAARCA 614 Query: 598 EQNYCRP--IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLL 655 Y RP + + + +++D RHP +E L++ S FIAN S +K+ ++++ Sbjct: 615 PTPYVRPKMLPEGAGQLLLEDVRHPCLE--LQEHVS--FIAN----SVAFEKDKCNMFII 666 Query: 656 TGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMV 715 TGPNMGGKST++R V+MA +G++VP S A I +VD + RVG++DN+ G STFMV Sbjct: 667 TGPNMGGKSTYIRSVGTAVLMAHVGAFVPCSVATISMVDSILGRVGASDNIIKGLSTFMV 726 Query: 716 EMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHEL 775 EMIET+ I+ AT++S VI+DE+GRGT+T +G IAW+ E+L + +C L ATHFHE+ Sbjct: 727 EMIETSGIIRTATDKSLVIIDELGRGTSTYEGCGIAWSIAEHLAKETKCFTLFATHFHEI 786 Query: 776 TDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI 835 T L+++L N + + L++V G+ + S+GIQV +LA P V+ A ++ Sbjct: 787 TKLAETLPTVKNCHMAAVADKDNFTLLYQVRAGVMEKSFGIQVARLANFPEHVVQNAQEV 846 Query: 836 LKTFE 840 FE Sbjct: 847 YNEFE 851 >gi|126304454|ref|XP_001382178.1| PREDICTED: similar to homolog of bacterial MutS proteins [Swiss-Prot accession numbers P23909, P10339, and P27345]; germline mutations are responsible for hereditary nonpolyposis colon cancer (HNPCC) [Monodelphis domestica] Length = 964 Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 196/649 (30%), Positives = 296/649 (45%), Gaps = 67/649 (10%) Query: 285 DIQSTLFIDSAARSNLEILRTLSGSRE-----QSLLKTIDYSITGAGGRLFAERIASPLT 339 D+ + +D+AA + L GS E QSL ++ T G RL + I PL Sbjct: 295 DLSQYMKLDNAA---VRALNLFQGSAEDKSGTQSLAALLNKCKTPQGQRLLNQWIKQPLL 351 Query: 340 DSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 D +I RL+ + F+ + L +Q+ +L+ PD+ R + + +D + I Sbjct: 352 DKNRIEERLNLVEAFVVDAELRQSLQEDLLRRFPDLHRFAKKFQRHAANLQDCYRMYQAI 411 Query: 399 RSGINILNLFLKNDLPEE----------LRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKR 448 N++ K++ + L K + +E TL D+ + Sbjct: 412 NQLPNVIQALEKHEGKHQMLLLAIFVTPLTDLHSDFSKFQEMIETTL------DMNQVEN 465 Query: 449 DGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEV 505 ++ D L + R D ++ + S A E I K++K+ N LGY+ V Sbjct: 466 HEFLVKASFDPHLTQLRESIDNLEKKMQSSLTSAARELGIEAGKHIKLDSNAQLGYYFRV 525 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEIL 565 T VL+ S F N +FT +L A N L + +E Sbjct: 526 TCKEEKVLR----SNKNFNTLDVQKNGVKFTNSKLA--------AFNDEYLKIRDEYEEA 573 Query: 566 SNAIIEQ--------SESLDNASQVIAIIDISIALAILAKEQN--YCRPII--DNSTNFI 613 +AI+++ E + + V+A +D ++ A +A Y RP+I I Sbjct: 574 QDAIVKEIINISSGYVEPMQTLNDVLAQLDAVVSFANVANGAPIPYVRPVILEKGQGRII 633 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +K RH VE Q FI ND + +KN ++TGPNMGGKST++RQ +I Sbjct: 634 LKGSRHACVEV----QDEVAFIPNDINF----EKNKQTFHIITGPNMGGKSTYIRQTGVI 685 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 V+MAQ+G +VP A + IVD + +RVG+ D G STFM EM+ETASIL AT S + Sbjct: 686 VLMAQIGCFVPCESAEVSIVDCILARVGAGDCQMKGVSTFMAEMLETASILRSATKDSLI 745 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 I+DE+GRGT+T DG +AWA EY+ + ATHFHELT L+ L +N + Sbjct: 746 IIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALADQLPTVNNLHVSAL 805 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 ++E + L++V G+ D S+GI V +LA P VI A E+ + H K Sbjct: 806 TTDEALTMLYQVKKGVCDQSFGIHVAELANFPKHVIENAKQKALELEE-FQHFGKPQESD 864 Query: 854 YPEIQTKESKNNLSKNDKL---FVEKIKCLNLDEMSP---LTALKTLYA 896 E TK + + +K+ F+ K+K L EMS T LK L A Sbjct: 865 EMEPATKRCYHEREQGEKIIQTFLAKVKELPFAEMSEDGIRTKLKQLKA 913 >gi|294671154|ref|ZP_06736008.1| hypothetical protein NEIELOOT_02862 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307092|gb|EFE48335.1| hypothetical protein NEIELOOT_02862 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 342 Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 136/321 (42%), Positives = 188/321 (58%), Gaps = 19/321 (5%) Query: 586 IDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPN 645 +D+ A A+E +Y P + + DGRHP+VE+ +++ F AN L + Sbjct: 26 LDVLCCFATTAEEADYVCPEFADYPMIEISDGRHPVVEQQVQR-----FTANHTRL---D 77 Query: 646 DKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADN 705 DK+ +L LLTGPNMGGKST++RQ ALIV+MA GS+VPAS A IG VD++F+R+G++D+ Sbjct: 78 DKH--RLMLLTGPNMGGKSTYMRQVALIVLMAHTGSFVPASAAKIGPVDQVFTRIGASDD 135 Query: 706 LASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCR 765 LAS RSTFMVEM ETA ILN AT QS V++DE+GRGT+T DGL++A A E+L N Sbjct: 136 LASNRSTFMVEMSETAYILNHATPQSLVLMDEVGRGTSTFDGLALAHAVAEHLLLKNGSF 195 Query: 766 GLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLP 825 L ATH+ ELT L + N L + I+FLH + G A SYGI V KLAGLP Sbjct: 196 ALFATHYFELTALPERYPAAVNMHLSALEQGRDIVFLHHIEAGPASKSYGIAVAKLAGLP 255 Query: 826 NTVISRAYDILKTFEKLYHHNQKDMRLY--------YPEIQTKESKNNLSKNDKLFVEKI 877 + A L+ E + + + + + ++ + K+ LF E + Sbjct: 256 ARALKAAQKYLENLESQAAEQRPQLDFFGSASFEPNFADDSAQDGERPSEKSSALFAE-L 314 Query: 878 KCLNLDEMSPLTALKTLYAVK 898 ++ DEMSP AL LY +K Sbjct: 315 DSIHPDEMSPREALDALYRLK 335 >gi|47087243|ref|NP_998689.1| DNA mismatch repair protein Msh2 [Danio rerio] gi|28278396|gb|AAH44370.1| MutS homolog 2 (E. coli) [Danio rerio] Length = 936 Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 183/648 (28%), Positives = 299/648 (46%), Gaps = 64/648 (9%) Query: 285 DIQSTLFIDSAARSNLEILRTLS--GSREQSLLKTIDYSITGAGGRLFAERIASPLTDST 342 D+ + +D+AA L + + S + SL ++ T G RL + I PL D Sbjct: 295 DLNQYMRLDNAAVQALNLFQGSSDDATGTHSLAGLLNKCRTPQGQRLVNQWIKQPLIDKN 354 Query: 343 KINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSG 401 KI RLD + F+++ L Q+ +L+ PD+ R + + +D + + Sbjct: 355 KIEERLDLVETFVEDSELRKSCQEDLLRRFPDLNRMAKKFQRQSSNLQDCYRVYQSVGQL 414 Query: 402 INIL----------NLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGG 451 N++ + L L + K + +E TL D+ + Sbjct: 415 PNVVLALERYSGKHQVLLHAAFISPLNDLISDFSKFQEMIETTL------DMNQVEHHEF 468 Query: 452 FLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEVTSS 508 ++ D +L + R D+ ++ + + A E + K +K++ N +GYF VT Sbjct: 469 LVKPSFDPTLSDLRENMDRLEKAMQAALSSAARELGLEAAKTVKLESNAQIGYFFRVTCK 528 Query: 509 SASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNA 568 +K L + +F N RFT +L L T + E +E NA Sbjct: 529 E----EKSLRNNKKFTTLDVQKNGVRFTNSKLSSLNEEYTKSR--------EEYEEAQNA 576 Query: 569 IIEQ--------SESLDNASQVIAIIDISIALAIL--AKEQNYCRPII--DNSTNFIVKD 616 I+++ + + ++VIA +D ++ A++ A + RP I S ++K Sbjct: 577 IVKEIISIAAGYVDPVQTLNEVIAQLDAVLSFAVVSHAAPVPFIRPKILEKGSGRLVLKA 636 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 RHP VE Q FI ND + ++TGP+MGGKST++RQ +IV+M Sbjct: 637 ARHPCVEA----QDEVAFIPNDVTFI----RGEKMFHIITGPSMGGKSTYIRQVGVIVLM 688 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+G +VP A + +VD + +RVG+ D+ G STFM EM+ETA+IL AT S + +D Sbjct: 689 AQIGCFVPCDEAELSVVDCVLARVGAGDSQIKGVSTFMAEMLETAAILRSATEDSLITID 748 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 E+GRGT+T DG +AWA EY+ + L ATHFHELT L++ + N + ++ Sbjct: 749 ELGRGTSTYDGFGLAWAISEYIATRLKSFCLFATHFHELTALAQQVPTVRNLHVTALTTD 808 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 + L+KV G+ D S+GI V +LA P VI+ A + E+ +D+ E Sbjct: 809 STLTMLYKVKKGVCDQSFGIHVAELASFPKHVIANAREKALELEEF-----QDISSVGEE 863 Query: 857 IQTKESKNNLSKND-----KLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 K K + K + + F+ K+K + +D MS + L +KA Sbjct: 864 AGPKAKKRCMEKQEGERIIEAFLAKVKSMPVDGMSDKAVKEELRKLKA 911 >gi|118087634|ref|XP_419359.2| PREDICTED: hypothetical protein [Gallus gallus] Length = 1466 Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 190/607 (31%), Positives = 300/607 (49%), Gaps = 69/607 (11%) Query: 290 LFIDSAARSNLEILRT-LSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRL 348 + +D NLE+L+ +G+ E +LL+ ID T G RL + + +PL + T IN RL Sbjct: 839 MVLDGVTLMNLEVLQNGTNGTTEGTLLERIDSCCTPFGKRLLKQWLCAPLCNPTSINDRL 898 Query: 349 DSINFFIQNPILINPIQKILKSSPDVPRSLSRL-KIG-----RGEPKDIAVIRDGIR--- 399 D++ + P + I + LK PD+ R LS++ IG + P A+ + I+ Sbjct: 899 DAVEDLLAVPAKLTEITEHLKKLPDLERLLSKIHSIGSPLKSQNHPDSRAIFYEEIKYSK 958 Query: 400 ----------SGINILNLFLKNDLPEE---------LRGAVEKLKKLPQSLEKTLSSMLS 440 G ++N + D EE L+ V + K P LS+ L Sbjct: 959 KKIADFLSALEGFKVMNEIV--DAMEEVASDFKSQVLKQLVTRKAKHPDGRFPDLSAELK 1016 Query: 441 DDLPTF----KRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 F R G + A D ++L+D K + + ++ K+ LK Sbjct: 1017 RWDTAFDHNQARKTGVITPKAGFDPDYDKALQD-IKTVEEDFRTYLDKQRKLLGLKSVLY 1075 Query: 497 NNLG---YFIEVTSSSASV-LKKDLESKD-RFIHRQTMSNLTRFTTLELIDLENRITNAT 551 G Y +E+ ++ S L ++ E K R +++ + ELI+ E R A Sbjct: 1076 WGTGKNRYQMEIPETATSRNLPEEYELKSTRKGYKRYWTKEIEKMLAELINAEERRDAAL 1135 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN--YCRPII--- 606 + +F+ + S+ A Q IA++D+ ++LA +++ + CRP+I Sbjct: 1136 KDCMRRLFYNFD-------KNSQDWQTAVQCIAVLDVLMSLANYSQDGDGPLCRPVILLP 1188 Query: 607 -DNSTNFI-VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSG---KLWLLTGPNMG 661 D++ F+ +K+ RHP + KT FI ND + D++ G L+TGPNMG Sbjct: 1189 VDSAPPFLELKNARHPCITKTF---FGDDFIPNDIVIG-SKDEDGGSEASCVLVTGPNMG 1244 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKST +RQ L+VIMAQ+G YVPA + +D++F+R+G++D + SG STF VE+ ET+ Sbjct: 1245 GKSTLMRQAGLLVIMAQLGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETS 1304 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTD---L 778 SIL AT S V++DE+GRGTAT DG +IA A + L E +CR L +TH+H L + Sbjct: 1305 SILQHATEHSLVLVDELGRGTATFDGTAIASAVVRELAENIKCRTLFSTHYHSLVEDYSG 1364 Query: 779 SKSLKRFHNATLQVSD----SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYD 834 S +++ H A + ++ S E I FL+K I G SYG +LA +P +I + + Sbjct: 1365 SAAVRLGHMACMVENESEDPSQETITFLYKFIEGACPKSYGFNAARLADIPEEIIQKGHR 1424 Query: 835 ILKTFEK 841 K FEK Sbjct: 1425 KAKEFEK 1431 Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 99/207 (47%), Gaps = 26/207 (12%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 E+ L TP MR++ ++KS N D+++ Y++G FYEL+ DA+ LG+ K Sbjct: 508 EDYLNKCTPGMRRWWQLKSQNFDAVICYKVGKFYELYHMDAVTGVNELGLIFMK------ 561 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESP--LEAKKRGNK------SLVRRNV 130 G P + L++ G++IA EQ E+P +EA+ + +VRR + Sbjct: 562 GSWAHSGFPETAFGRFSAILVQKGYKIARVEQTETPEMMEARCKATAHTTKFDKVVRREI 621 Query: 131 VRLVTPGTLTEDQL-LSPTDSN--YLMAVARIRTE-----WAIAWIDISTGIFKISTSNH 182 R++T GT T + PT+++ YL+ V + + ++D S G F + + Sbjct: 622 CRIITKGTQTYSIIDCDPTENHNKYLLCVKEKEDSSGQRVYGVCFVDTSVGKFYVGQFSD 681 Query: 183 DRLISD----IMRIDPREIIFSEKELS 205 DR S + P +++F + L+ Sbjct: 682 DRHCSRFRTLVAHYTPVQVLFEKGNLT 708 >gi|118361141|ref|XP_001013801.1| MutS domain III family protein [Tetrahymena thermophila] gi|89295568|gb|EAR93556.1| MutS domain III family protein [Tetrahymena thermophila SB210] Length = 1139 Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 239/921 (25%), Positives = 404/921 (43%), Gaps = 162/921 (17%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 T M+QY +IK+ + D ++ ++MG FYELF++DA++A+R L IT T + H CG Sbjct: 226 TSAMKQYWQIKAKHFDKIILFKMGKFYELFYEDAIIATRLLDITFTNKELH-------CG 278 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 P + KL++ G+++ + EQ K+ +V R++ +++T GT+ Sbjct: 279 FPEKALEKFASKLVQFGYKVVVVEQ------TSKKTTTGIVDRDITQIITKGTINFTFEE 332 Query: 146 SPTDSNYLMAV-ARIRTEWAIAWIDISTGIFKISTSNHD----RLISDIMRIDPREIIFS 200 D YL+ + + E+ I + T ++ D RL S + P+EI++ Sbjct: 333 QNHDPKYLLVIRQKTNQEFGIIVYESFTSKIQVGLLQDDKTQTRLKSFLCVTKPQEIVYD 392 Query: 201 E--------KELSHAEYKSLFETL---GNVAVAQPNVFFDHSISESRIADY----YNITT 245 K L ++S+ + + Q F+ S + Y +I T Sbjct: 393 PGNITSDILKILKSQYFQSVMSPMRDNKDQWSTQLATFYIEKQFGSEVQKYPQELRDIRT 452 Query: 246 VDTF-GSFSQVEKTAAAAAISYIKKTQMVNK--PTIGYPE----REDIQSTLFIDSAARS 298 D G ++ A A SY+ T + + Y E + + +DS A Sbjct: 453 NDEIRGQVINLKYAALAGFFSYMDSTLQLESILNSSEYVECDFDNKQFSQRMILDSQALQ 512 Query: 299 NLEILR----TLSGSREQ------SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRL 348 +LEI L+ + +Q +LL +DY+ T G R+ + + SPL D + IN R Sbjct: 513 HLEIFENSQTALTTTFQQVDQKKGTLLNYLDYTKTPYGKRMLKKWVCSPLIDISAINDRY 572 Query: 349 DSINFFIQNPILINPIQKILKSSPDVPR---SLSRLKIGRGEPKDIAVIRDGIRSGINIL 405 D+I N + + Q + D+ R S+ R + + + AV+ + I S Sbjct: 573 DAIEDIQNNLAMKDKFQYGIARYADIERLCSSIYRYSVKQKHAEK-AVMYENISSA---- 627 Query: 406 NLFLKNDLPEELRGAVEKLKKLPQSLEKTL----------------------SSMLSDDL 443 +E + + +K++ + +E+T LS DL Sbjct: 628 -------RLKEFKNLINSMKEIEKLIEETFMVNQENFKSQRLKRLCTYRLKGDPKLSGDL 680 Query: 444 PTF-----------------KRDGGFLRDGA--DASLDETRSLRDQSKRIIASLQLKYAE 484 P K G ++ D E S+R Q K L +Y E Sbjct: 681 PKVSSFIKVLEDIIVLDSKEKIAGKYIEQPVPKDGFCQEYDSIRLQIKAYQDELD-QYLE 739 Query: 485 ETKIK----NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 + K+K ++ NN Y I+V + ++K + F + + RFT+ Sbjct: 740 QLKVKFKTNDISYAFLNNRQYDIQVNKTLFDKIQKPAD----FSLQSHSGSFQRFTS--- 792 Query: 541 IDLENRITNATNSALLIELESF--EILSNAIIEQSESLDNASQVIAIIDISIALAILAKE 598 R T + A + ELE EILSN + + D +++ +I IS A +A + Sbjct: 793 -----RFT-SEKVAFIEELEEQLKEILSNFCV--TVFRDIVAELDCLISISHACFTMA-D 843 Query: 599 QNYCRPIIDNSTN-----FIVKDGRHP-IVEKTLKQQSSKPFIANDCDLSC-PNDKNSGK 651 CRP+I + N F +K GR+P +++ LKQ + + N ++ PN Sbjct: 844 GVMCRPVIKFAKNQKETFFYLKQGRNPNLIQLDLKQVPNDIILGNIAGMNAQPN------ 897 Query: 652 LWLLTGPNMGGKSTFLRQNALIVIMAQMG------------------SYVPASYAHIGIV 693 + +LTGPNMGGKST LR L I+AQ+G YVPA +V Sbjct: 898 IMILTGPNMGGKSTTLRLFCLSAILAQIGIYFRNYQNFKLILQLKQGCYVPAEQCEFSLV 957 Query: 694 DKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWA 753 D++F+R+G+ D L G+STF +EM E + + T S I DE+GRGT+T DG++IA+ Sbjct: 958 DRIFTRIGAGDKLIEGKSTFYIEMEEVKNSIMYGTYNSIAIFDELGRGTSTFDGVAIAFG 1017 Query: 754 TIEYLHETNRCRGLLATHFHELTDLSKSLKR--FHNATLQVSDSNEGIIFLHKVIPGIAD 811 ++Y E + R + ATHF L + + K F++ + ++ +IF +K+ G A+ Sbjct: 1018 ILKYFIEKIQSRCIFATHFFLLINELRFYKEISFYHMEYYYDNKSKKLIFKYKLKQGNAE 1077 Query: 812 HSYGIQVGKLAGLPNTVISRA 832 S+GI + K+ G+ +V++ A Sbjct: 1078 SSFGIDLAKIVGIEQSVLNLA 1098 >gi|312072605|ref|XP_003139141.1| hypothetical protein LOAG_03556 [Loa loa] gi|307765695|gb|EFO24929.1| hypothetical protein LOAG_03556 [Loa loa] Length = 1204 Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 243/939 (25%), Positives = 412/939 (43%), Gaps = 151/939 (16%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 +K TP RQ+ KS D+++F+++G FYE++ DA++ L + ++ Sbjct: 246 MKKQTPGHRQWWAAKSAYFDTILFFKVGKFYEMYHMDAVIGVENLNLN------YMRGSF 299 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR-----GNKSLVRRNVVRLVTP 136 CG P + +L+ G+++A EQ E+P + + R N +VRR V + TP Sbjct: 300 AHCGFPEVAYGRFADQLVNRGYKVARVEQTETPTQLESRNKIEKANDKVVRREVCNITTP 359 Query: 137 GTLTEDQL----------LSPTDSNYLMAVARIRTE---WAIAWIDISTGIFKIST---- 179 GT T L + T + YL AVA TE + + +ID + G F I Sbjct: 360 GTRTYGVLDGNDEQSTVDVMDTTARYLYAVAERGTESVQYGVCFIDTTVGRFYIGCLSDG 419 Query: 180 SNHDRLISDIMRIDPREIIFSEKELSHAE---YKSLFETLGNVAVAQPNVFFDHSISESR 236 SN L + P +I++ +S + Y S + A+ F + Sbjct: 420 SNRSALRTLFSHYQPAQILYERGRVSASTMTVYNSTVSAVPKEALFPKKEFLTSEDTLKL 479 Query: 237 IAD--YYN-------ITTVDTFGSFSQVEK---------TAAAAAISYIKKT----QMVN 274 +AD Y+ + +D S + K +A A I Y+++ M++ Sbjct: 480 LADDKYFGKLYDKWPVVLLDMIDRDSLIPKCNPAYDACVSALGAIIWYLRRCFVDVDMIS 539 Query: 275 -------KP-TIGYP---EREDIQ--------STLFIDSAARSNLEILRTLSGSRE---- 311 KP + P ++++I+ L +DS +L I+ + ++ Sbjct: 540 MRRFELYKPMNLTGPLSHDKDEIEVGVHYWRGRRLILDSLTLKHLNIIPPIGSMKKFAPR 599 Query: 312 ------QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPI--LINP 363 +L I+ T AG RL + + +P+ D +++R D+I + + + I+ Sbjct: 600 DPITTKYTLYNVINKCATPAGKRLLRQWVCAPVCDQEILSSRQDAIEWLSEARLKGFIDK 659 Query: 364 IQKILKSSPDVPRSLSR-----LKIGRGEPKDIAV------------IRDGIRS--GI-N 403 ++ L PD+ R + + LK E D IRD +R+ G + Sbjct: 660 ARERLCKVPDLERLVQKIHTLGLKYRAEEHPDSRAQMFETMRYNKRKIRDLVRALEGFEH 719 Query: 404 ILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM---LSDDLPTFKRDGGFLRDGADAS 460 I +L LK + E K +P LE+ +S+DL FK F RD A Sbjct: 720 IQDLRLKF-----MENFGESQKPVPALLERCFGYRFPDISNDLEHFK--NAFNRDKAQEE 772 Query: 461 ---LDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK-HNNNLGYF--------IEVTSS 508 + E +++ I + + + + ++ + H +N+ +F +E+ Sbjct: 773 GIIVPEKGVIKEYDDTIYNVKECIHELDLYLNVIRRQLHCSNINFFGSGRSRYQLEIPEG 832 Query: 509 SASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNA 568 A L + E K + R T EL++L + A N ++ + + Sbjct: 833 IAMNLSHEFELK------SSRKGYKRMVTDELVNLVKNLDEAENQLDILRRDLMRRVFAD 886 Query: 569 IIEQSESLDNASQVIAIIDISIALAILAKEQ--NYCRP--IIDNSTNFI-VKDGRHPIVE 623 ++S + +A+ D+ ++L + ++ N CRP I D+ + +K G HP + Sbjct: 887 FGDRSIKWTMVVERMAVFDVLLSLTLYGQDCGLNMCRPQFIYDSKLPVLEIKSGYHPSLA 946 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 SS +I N L N LLTGPNMGGKST +RQ ++V++AQ+GS+V Sbjct: 947 AIAASGSSFTYIPNSVLLG----GNQPSTILLTGPNMGGKSTLMRQVGVLVVLAQIGSFV 1002 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA + VD++F+R+G+ D + +G+STF VE+ ET IL AT S VI+DE+GRGT+ Sbjct: 1003 PADEMKLSPVDRIFTRMGAGDRITAGQSTFYVELYETNLILRNATKHSLVIMDELGRGTS 1062 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK---SLKRFHNATLQVSDSN---- 796 T DG +IA+A + + CR +TH+H L + S+K H A + V + N Sbjct: 1063 TYDGTAIAYAVLLDMATRLNCRTFFSTHYHGLCKAVQNISSIKAAHMACI-VENENAEDP 1121 Query: 797 --EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAY 833 E + FL+ + GI SYG K++GL VI A+ Sbjct: 1122 TMENVTFLYTLTDGICPKSYGFFAAKISGLKTEVIRAAF 1160 >gi|194872672|ref|XP_001973060.1| GG13556 [Drosophila erecta] gi|190654843|gb|EDV52086.1| GG13556 [Drosophila erecta] Length = 1190 Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 245/934 (26%), Positives = 422/934 (45%), Gaps = 148/934 (15%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 E+ L +P +RQ+ +KS N D ++F+++G FYEL+ DA + LG T ++ Sbjct: 255 EKFLNGLSPGVRQWWVLKSDNYDCVLFFKVGKFYELYHMDADVGVNELGFT------YMR 308 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNK-------SLVRRNVV 131 + G P + + LI G ++A EQ E+P +R + +V R + Sbjct: 309 GEFAHSGFPEISFDKMSTILIDRGFKVARVEQTETPDMMTERCKRIKATKFDKVVAREIC 368 Query: 132 RLVTPGTL---TEDQLLSPTDSNYLMAVAR----IRTEWAIAWIDISTGIFKIST----S 180 ++ GT ++ ++ NY++A+ + + + +ID S G F + Sbjct: 369 QITNRGTQVFGSQCKIGPNHQPNYMLAIVEQDEGTWSRYGVCFIDTSIGDFHVGEFEDDK 428 Query: 181 NHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQ----------------- 223 N RL++ + P ++ + LS + + LG + Q Sbjct: 429 NCSRLLTLLSHHMPVLLLNEKSALSQRSQQIVRTVLGGILKEQVPGNGTQACSAEKTLKL 488 Query: 224 -PNVFFDHSISESRIA----------DYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQM 272 ++ S S+ D+ +T D + ++ A I +I K ++ Sbjct: 489 LAERYYAGSGSDDNWPLVLRTMQSDMDHLGLTPNDNY----KLALKALGQCIFFIHKCKL 544 Query: 273 VNK--PTIGY-----PE-----REDIQSTL-----FIDSAARSNLEILRTLSGSREQSLL 315 K P Y P+ + + STL +D+ SNL I+ E SLL Sbjct: 545 EPKVLPMARYQLYVPPDQLADAKPAVASTLRRSHMVLDATTLSNLRII-----GEEHSLL 599 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 T+D+ T G RL + +P D I R D+I I+ + ++ +L PD Sbjct: 600 STLDHCCTKFGKRLLHHWLCAPSCDVAVIKERQDAIGELIRMASELQEVRALLAPLPDFE 659 Query: 376 RSLSRLKI-GRGE------PKDIAVIRD----------GIRSGINILNLFLKNDLPEELR 418 R+L+++ + G + P A++ + G + + N K LP Sbjct: 660 RNLAQIHLFGNKQIKQMDHPDSRAILFEEKIYNKQKLLGFMAVLKGFNALTK--LPTLFH 717 Query: 419 GA----VEKLKKLPQSLEK--TLSSMLSDDLPTFKRDG----GFL--RDGADASLDETR- 465 + ++ +LP+S LS L F D G + + G DA D Sbjct: 718 QCETALLRRITQLPESGGSFPDLSKELQYFATAFDHDAAAKTGVIAPQAGMDAEYDAAMD 777 Query: 466 SLRDQSKRIIASLQLKYAEETKIKNLKIKH--NNNLGYFIEVTSSSASVLKKDLESKDRF 523 S+ + KR+ + L+ ++ + +I + ++ Y ++V S AS K + + Sbjct: 778 SIGEIEKRLKSYLE----QQERHFGCRITYFGSDKKRYQLDVPESHASKANKSYSLEGQT 833 Query: 524 IHRQTMSNLTRFTTLELI-DLENRITNATNSALLIELES--FEILSNAIIEQSESLDNAS 580 ++ T T L+ D+++ T + +L +L FE SN + + +D Sbjct: 834 KGKKPSRRYTTAETRALLKDMQH--AEETRNMVLKDLARRLFEKFSNHYDQWKQCID--- 888 Query: 581 QVIAIIDISIALAILAKEQNY-CRPIIDNSTN--FI-VKDGRHPIVEKTLKQQSSKPFIA 636 +A +D+ +LA A +Q C P + + FI +++G HP V ++ +I Sbjct: 889 -CVANLDVLGSLAEYAGQQMVICVPELVSGAEQPFIQLEEGYHPCV-------NASTYIP 940 Query: 637 NDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKL 696 N +L ++ L LLTGPNMGGKST +R+ L+VIMAQ+G+++PA+ + +VD++ Sbjct: 941 NGLELGTTSE---APLSLLTGPNMGGKSTLMREVGLLVIMAQIGAHIPATSCRLSLVDRI 997 Query: 697 FSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIE 756 F+R+G+ D++ +G STF+VE+ ET+ IL AT S V+LDE+GRGTAT DG +IA + + Sbjct: 998 FTRLGAQDDILAGHSTFLVELNETSLILKHATCHSLVLLDELGRGTATYDGTAIAASVVN 1057 Query: 757 YLHETNRCRGLLATHFHELTDLSKSLKRF---HNATLQVSDSN-----EGIIFLHKVIPG 808 +L +CR L +TH+H L D + KR H A + ++ N E + FL+K G Sbjct: 1058 FLANL-KCRTLFSTHYHNLIDFFHNDKRITLGHMACMVENEDNADPTQETVTFLYKYTAG 1116 Query: 809 IADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 SYG KLAG+P +I RAY++ K E + Sbjct: 1117 ACPKSYGFNAAKLAGMPQGIIKRAYELSKKVEAI 1150 >gi|225018517|ref|ZP_03707709.1| hypothetical protein CLOSTMETH_02464 [Clostridium methylpentosum DSM 5476] gi|224948718|gb|EEG29927.1| hypothetical protein CLOSTMETH_02464 [Clostridium methylpentosum DSM 5476] Length = 482 Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 165/507 (32%), Positives = 261/507 (51%), Gaps = 53/507 (10%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 MM+QY +IK + D L+F+R+GDFYELFFDDA+LAS+ L +TLT R L + PMCGVP Sbjct: 1 MMQQYKQIKERHKDHLLFFRLGDFYELFFDDAILASKELELTLTGRDCGLEERAPMCGVP 60 Query: 88 VHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSP 147 H+ + YI++L+ G+++AICEQ E+P A K +V R V+R++TPGT+ E +L Sbjct: 61 FHSVDTYIKRLVTKGYKVAICEQTENPAFA-----KGIVSREVIRVITPGTIAEGNMLEE 115 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIM----RIDPREIIFSE-- 201 +NY+ +V + + I++ D+STGI S L +DI+ R P EI+F+E Sbjct: 116 GKNNYICSVYVEKKSFGISFADVSTGIAYTSEFRSSNLTADIINELQRFSPSEILFNEAF 175 Query: 202 ---KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESR--IADYYNITTVDTFGSFSQVE 256 KE++H K+ + G + + + ++S S++R + + T S + Sbjct: 176 VDLKEVAHY-LKTKMQCTGELLMEE-----EYSASQARELVQKQFGKTPQQAGLENSPLA 229 Query: 257 KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTL-SGSREQSLL 315 + A + YI +TQ I + + L ID AR NLE+ T+ SG ++ SLL Sbjct: 230 LRSLGALLGYIVETQKDGAKRIVNLTVYNDEQYLSIDLTARRNLELTETMRSGEKKGSLL 289 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D + T G RL + I PL KI R ++ I P++ I +L + D+ Sbjct: 290 WVLDRTKTSMGKRLMRKTIEQPLIGPAKILKRQAAVGELISQPVVRGEIISLLSNVYDLE 349 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE--------------ELRGAV 421 R ++++ G P+++ + F LP+ EL G + Sbjct: 350 RLMTKVIYGSVSPRELKALS------------FTAQHLPQLKEQLALLGAPLLAELNGKM 397 Query: 422 EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLK 481 + +L +E + + D+ P ++GG ++ G + LDE R +RD K I L+ + Sbjct: 398 ADMTELHNLIE----NAVIDEPPINLKEGGVIKPGFNEELDELRGIRDNGKDYILKLEER 453 Query: 482 YAEETKIKNLKIKHNNNLGYFIEVTSS 508 E T IK LKI +N GY+IEVT S Sbjct: 454 EKERTGIKKLKISYNRVFGYYIEVTKS 480 >gi|320165218|gb|EFW42117.1| DNA mismatch repair protein MutS [Capsaspora owczarzaki ATCC 30864] Length = 1062 Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 126/288 (43%), Positives = 184/288 (63%), Gaps = 25/288 (8%) Query: 579 ASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI-VKDGRHPIVEKTLKQQSSKP---- 633 AS+ I+ ID++I+ A A+ ++ RP + +++ + ++ G HP+++ + S+ Sbjct: 756 ASESISQIDVAISHAHTAQRYDWTRPTLVSASGVLDIRGGFHPVLDALQMKDSATANQVS 815 Query: 634 FIANDCDLSC------------PND---KNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 F NDC +S PN+ + W++TG NMGGKSTF+RQNALIV++AQ Sbjct: 816 FTPNDCVMSVAEPARGVQAAPSPNNTAPARAAHCWIITGANMGGKSTFMRQNALIVLLAQ 875 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 MGS+VPA A IGIVD+LF+RVG++DNL +STFMVEM ETA IL +AT++SFVI+DEI Sbjct: 876 MGSHVPALSATIGIVDRLFTRVGASDNLVKHKSTFMVEMSETARILREATSRSFVIVDEI 935 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS----LKRFHNATLQVSD 794 GRGT+T DG++++WA + YLH RCR L ATHF E+ + L+ ++V Sbjct: 936 GRGTSTTDGVALSWAVLSYLHTKTRCRMLFATHFLEVAQRCQEHPQLLRNAACHMVRVLH 995 Query: 795 SNEG-IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 S EG F H+++PG+A SYGI+V +LAGLP V+ A I ++ Sbjct: 996 STEGQPSFTHQIVPGVALRSYGIEVAELAGLPAAVVDEARWIAGQLQQ 1043 Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 19/183 (10%) Query: 28 MMRQYIEIKS--INPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +M+ Y IKS PD +V ++ G F+EL+ DA + L I LT + + G Sbjct: 139 VMQVYNTIKSRYSQPDQIVLFQFGKFFELYGQDAETGASTLNIQLTSK-----DGLKFAG 193 Query: 86 VPVHTANHYIQKLIKIGHRIA-ICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 P + + I +L+K G + +CE +E ++G L R V R+++ G D + Sbjct: 194 FPAANSLNRIAQLVKAGFTVVEVCE-----IEGLEQGG--LRYRAVTRIISRGNQI-DLI 245 Query: 145 LSPTDSN--YLM-AVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 S ++N YL A + + W D+ST + + RL + + P E++ Sbjct: 246 DSDAENNVVYLHGASSSTSHRIGVVWSDLSTAELYAGSISPSRLPELLSSLRPVELVVES 305 Query: 202 KEL 204 L Sbjct: 306 AAL 308 Score = 44.7 bits (104), Expect = 0.077, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 1/88 (1%) Query: 292 IDSAARSNLEILRTLSGSREQS-LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDS 350 +D + + LE+ + G+ S L TI ++ T GGRL + PLTD I R D Sbjct: 379 VDPVSCAALELFEPVPGNAASSTLFATIKHTQTSMGGRLLRRSLMEPLTDIELIRKRQDH 438 Query: 351 INFFIQNPILINPIQKILKSSPDVPRSL 378 FF+ + N ++ DVPR+L Sbjct: 439 TAFFMFDEPRRNRVRSTFGGIKDVPRTL 466 >gi|242795788|ref|XP_002482664.1| DNA mismatch repair protein Msh3 [Talaromyces stipitatus ATCC 10500] gi|218719252|gb|EED18672.1| DNA mismatch repair protein Msh3 [Talaromyces stipitatus ATCC 10500] Length = 1113 Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 242/898 (26%), Positives = 416/898 (46%), Gaps = 126/898 (14%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK---------- 75 TPM +Q I+IK + D+L+ +G + F +DA A++ L I GK Sbjct: 203 TPMEKQVIDIKRKHMDTLLVVEVGYKFRFFGEDARTAAKELSIVCIP-GKMRFDEHPSEE 261 Query: 76 HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLV 134 HL + +PVH + ++++L+ GH++ + Q+E + L+A + R + + Sbjct: 262 HLDR-FASASIPVHRLHVHVKRLVTAGHKVGVVRQLETAALKAAGDNRNAPFVRKLTNVY 320 Query: 135 TPGTLTED----------QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSN--H 182 T GT +D + + YL+ + T + + + + +T + + Sbjct: 321 TKGTYIDDAEGLSAPAAASAGATHTTGYLLCITESNTSGSDERVHVGIVAVQPATGDIVY 380 Query: 183 DRLISDIMR---------IDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSIS 233 D MR I P EI+ ELS A K + +++ ++ NVF D Sbjct: 381 DEFEDGFMRGEIETRLLHIAPCEILIV-GELSRATDK----LVKHLSGSKMNVFGDKVRV 435 Query: 234 E-------------SRIADYY-----NITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNK 275 E SR+A +Y + T D + + +EK I + M++ Sbjct: 436 ERVARSKTAAVEGHSRVASFYAEKLKSTETRDDGNASALLEKVLQLPDQVTICLSSMIDH 495 Query: 276 PT----------IGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDYSITG 324 + Y + +S + ++ ++LEI + + S + SL +D + T Sbjct: 496 LSEYGLEHIFDLTKYFQSFSARSHMLLNGNTLTSLEIYQNQTDHSSKGSLFWIMDRTRTR 555 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFI--QNPILINPIQKILKS-SPDVPRSLSRL 381 G RL + + PL D ++ R+ ++ + + L ++ +L + D+ RSL R+ Sbjct: 556 FGQRLLRKWVGRPLLDKRQLEERVGAVEELLNSEQSTLTGRLKDLLSNIRSDLERSLIRV 615 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 G+ ++ + +R+ I N F+ PEE + T+ S Sbjct: 616 YYGKCTRPELLTL---LRNLQKIANQFVYIKSPEE------------TGFQSTMISEAIA 660 Query: 442 DLPTFKRDGGFLRDGADASLDE----------TRSLRD--QSKRIIASL-------QLKY 482 LPT + D D +A E + D + K IAS+ Q Sbjct: 661 ALPTIQDDVIMFLDKINAYAAEHDDKYEFFRESEESEDITEQKMGIASVEHDLEQHQSVV 720 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 AE K ++ + + Y IEV ++SA + + ++ L+RF T +++ Sbjct: 721 AEILGKKKVEYVTSAGIEYLIEVENNSAQIKRVPAS----WVKISGTKKLSRFHTPDVVQ 776 Query: 543 L-ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 L R + A + E +L+ I + +S + Q +A++D ++LA +A + Y Sbjct: 777 LMRQRDQHKEALAAACDKEYMRLLAE-ISTRYQSFRDCIQSLALLDCLLSLAAIATQPGY 835 Query: 602 CRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661 +P + T +V+ GRHP+VE+ L ++ ND L+ N + L+TGPNMG Sbjct: 836 TKPQYTDETRIVVEQGRHPMVEQLLLDS----YVPNDTALAT----NETRALLVTGPNMG 887 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKS+++RQ ALI IM Q+GSYVPA A +G++D +F+R+G+ DN+ +G STFMVE+ ETA Sbjct: 888 GKSSYVRQVALIAIMGQIGSYVPAKSATLGMLDAVFTRMGAFDNMLTGESTFMVELSETA 947 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS 781 IL QAT +S V+LDE+GRGT+T DG++IA A ++Y+ + R L TH+ L+ ++KS Sbjct: 948 DILKQATPRSLVVLDELGRGTSTHDGVAIAQAVLDYMVRSIRSLTLFITHYQNLSVMTKS 1007 Query: 782 L--KRFHNATLQVS-----DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 N ++ + E I FL++V G+A SYG+ V +LA LP +V+ A Sbjct: 1008 FPNNELRNVHMRFTESGEPGGEEEITFLYEVGEGVAHRSYGLNVARLANLPPSVLDLA 1065 >gi|322708049|gb|EFY99626.1| DNA mismatch repair protein MSH2 [Metarhizium anisopliae ARSEF 23] Length = 1058 Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 247/921 (26%), Positives = 412/921 (44%), Gaps = 123/921 (13%) Query: 8 PQKLYSE-QIDLEENLKSSTP--------------MMRQYIEIKSINPDSLVFYRMGDFY 52 PQK S+ Q D +L +TP +R Y + + D++ + GD+Y Sbjct: 116 PQKRVSQAQWDWRRDLTFTTPSLPVLWFKLDDEGGFIRFYKSLPDVGEDTIRIFDRGDWY 175 Query: 53 ELFFDDALLASRCLGIT---LTKRGKHLGKDIPMCGVPVHTANHYIQK-LIKIGHRIAIC 108 D+A ++ + T L + G++ +P + V ++++ L K+G RI I Sbjct: 176 TAHGDNASFIAKTVYKTTSVLRQLGRNDHTGLPSVTMTVTVFRQFLREALFKLGKRIEIW 235 Query: 109 EQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT--EDQLLSPTDSNYLMAVARIRTEWA-- 164 E + K V+ +PG L ED L +S ++ +I + + Sbjct: 236 ESPSGRMNWK-----------CVKQASPGNLQDIEDDLGGQIESAPMIIAVKISAKASEA 284 Query: 165 ----IAWIDISTGIFKISTSNHDRLISD----IMRIDPREIIFS------EKELSHAEYK 210 + + D S +S + L S+ ++++ RE + +K+ A+ K Sbjct: 285 RNVGVCFADASVRELGVSEFLDNDLYSNFESLLIQLGVRECVIQLDKGDKDKDPELAKLK 344 Query: 211 SLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE-KTAAAAAISYIKK 269 + + G +P F E +A + + Q + K A +A S IK Sbjct: 345 QIIDNCGVAIAERPAGDFGTRDIEQDLARL--LKDDKSVNLLPQTDLKLAMGSAASLIKY 402 Query: 270 TQMVNKPT-IG--YPEREDIQSTLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGA 325 ++ P+ G + + D+ + +D+AA L ++ GS+ S+ +++ T Sbjct: 403 LGVLQDPSNFGQYHLYQHDLAQFMKLDAAALKALNLMPGPRDGSKTMSIYGVLNHCKTPV 462 Query: 326 GGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIG 384 G RL A+ + PL D +I R + F + L +Q+ L+S PD+ R R + G Sbjct: 463 GSRLLAQWLKQPLMDKDEIEKRQQLVEAFFNDTELRQTMQEEHLRSVPDLYRLSKRFQRG 522 Query: 385 RGEPKDIA-----VIR--DGIRSGINILNLFLKNDL----PEELRGAVEKLKKLPQSLEK 433 + +D+ VIR I + +++ ++ L +LR + L KL +E+ Sbjct: 523 KANLEDVVRAYQVVIRLPGFIGTFEGVMDEAYRDPLDIAYTTKLRELSDNLGKLQDMVEQ 582 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRII------ASLQLKYAEETK 487 T+ DL R ++ D L R DQ R I A+ L + K Sbjct: 583 TV------DLDALDRHEYIIKSEYDQGLQTIRKKLDQLDRDIRAEFHEAARDLGQEADKK 636 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL------I 541 I L+ H + G + +T A ++ +K + T N FTT ++ Sbjct: 637 I-FLETSHKVH-GVCMRLTRQEAGCIR----NKSSYQECSTQKNGVYFTTKKMQSYRREY 690 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILA--KEQ 599 D ++ N T S+L+ E+ N L+ + V+A +D+ ++LA + + Sbjct: 691 DQLSQNYNRTQSSLVNEV------VNVASSYCPVLERLAGVLAHLDVIVSLAHCSVHAPE 744 Query: 600 NYCRPII----DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLL 655 Y RP I + T I RHP +E Q FI ND + + DK+S ++ Sbjct: 745 AYVRPKIHTRGEGQTRLI--GARHPCME----LQDDVQFITNDLEFT--RDKSS--FLII 794 Query: 656 TGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMV 715 TGPNMGGKST++RQ +I +MAQ+G +VP + A + I D + +RVG++D+ G STFM Sbjct: 795 TGPNMGGKSTYIRQAGVIALMAQIGCFVPCAEAELTIFDSILARVGASDSQLKGVSTFMA 854 Query: 716 EMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHEL 775 EM+ETA+IL AT +S +I+DE+GRGT+T DG +AWA E++ + C + ATHFHEL Sbjct: 855 EMLETANILKSATKESLIIIDELGRGTSTYDGFGLAWAISEHIVKEIGCFAMFATHFHEL 914 Query: 776 TDLSKSLKRFHNATLQVSDSNEG-------IIFLHKVIPGIADHSYGIQVGKLAGLPNTV 828 T L+ + N + S G + L+KV PGI D S+GI V +L P+ V Sbjct: 915 TALADQYPQVRNLHVTAHISGTGKDNSKREVTLLYKVEPGICDQSFGIHVAELVRFPDKV 974 Query: 829 I---SRAYDILKTFEKLYHHN 846 + R D L+ F + N Sbjct: 975 VRMAKRKADELEDFTTKHEDN 995 >gi|213648336|ref|ZP_03378389.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 303 Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 133/317 (41%), Positives = 188/317 (59%), Gaps = 20/317 (6%) Query: 586 IDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPN 645 +D+ + LA A NY P + + +GRHP+VE+ L + PFIAN +LS Sbjct: 2 LDVLVNLAERAWTLNYTCPTFTDKPGIRITEGRHPVVEQVLNE----PFIANPLNLSPQR 57 Query: 646 DKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADN 705 ++ ++TGPNMGGKST++RQ ALI ++A +GSYVPA IG +D++F+RVG+AD+ Sbjct: 58 -----RMLIITGPNMGGKSTYMRQTALIALLAYIGSYVPAQNVEIGPIDRIFTRVGAADD 112 Query: 706 LASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCR 765 LASGRSTFMVEM ETA+IL+ AT S V++DEIGRGT+T DGLS+AWA E L + Sbjct: 113 LASGRSTFMVEMTETANILHNATENSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKAL 172 Query: 766 GLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLP 825 L ATH+ ELT L + ++ N L + + I F+H V G A SYG+ V LAG+P Sbjct: 173 TLFATHYFELTQLPEKMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVP 232 Query: 826 NTVISRAYDILKTFEKLYHH---NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNL 882 VI RA L+ E + + Q D T+ S + VE ++ L+ Sbjct: 233 KEVIKRARQKLRELESISPNAAATQVD--------GTQMSLLAAPEETSPAVEALENLDP 284 Query: 883 DEMSPLTALKTLYAVKA 899 D ++P AL+ +Y +K+ Sbjct: 285 DSLTPRQALEWIYRLKS 301 >gi|320165237|gb|EFW42136.1| mismatch repair ATPase [Capsaspora owczarzaki ATCC 30864] Length = 1120 Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 126/288 (43%), Positives = 184/288 (63%), Gaps = 25/288 (8%) Query: 579 ASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI-VKDGRHPIVEKTLKQQSSKP---- 633 AS+ I+ ID++I+ A A+ ++ RP + +++ + ++ G HP+++ + S+ Sbjct: 814 ASESISQIDVAISHAHTAQRYDWTRPTLVSASGVLDIRGGFHPVLDALQMKDSATANQVS 873 Query: 634 FIANDCDLSC------------PNDK---NSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 F NDC +S PN+ + W++TG NMGGKSTF+RQNALIV++AQ Sbjct: 874 FTPNDCVMSVAEPARGVQAAPSPNNTAPTRAAHCWIITGANMGGKSTFMRQNALIVLLAQ 933 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 MGS+VPA A IGIVD+LF+RVG++DNL +STFMVEM ETA IL +AT++SFVI+DEI Sbjct: 934 MGSHVPALSATIGIVDRLFTRVGASDNLVKHKSTFMVEMSETARILREATSRSFVIVDEI 993 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS----LKRFHNATLQVSD 794 GRGT+T DG++++WA + YLH RCR L ATHF E+ + L+ ++V Sbjct: 994 GRGTSTTDGVALSWAVLSYLHTKTRCRMLFATHFLEVAQRCQEHPQLLRNAACHMVRVLH 1053 Query: 795 SNEG-IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 S EG F H+++PG+A SYGI+V +LAGLP V+ A I ++ Sbjct: 1054 STEGQPSFTHQIVPGVALRSYGIEVAELAGLPAAVVDEARWIAGQLQQ 1101 Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 93/402 (23%), Positives = 160/402 (39%), Gaps = 61/402 (15%) Query: 28 MMRQYIEIKS--INPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +M+ Y IKS PD +V ++ G F+EL+ DA + L I LT + + G Sbjct: 139 VMQVYNTIKSRYSQPDQIVLFQFGKFFELYGQDAETGASTLNIQLTSK-----DGLKFAG 193 Query: 86 VPVHTANHYIQKLIKIGHRIA-ICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 P + + I +L+K G + +CE +E ++G L R V R+++ G D + Sbjct: 194 FPAANSLNRIAQLVKAGFTVVEVCE-----IEGLEQGG--LKYRAVTRIISRGNQI-DLI 245 Query: 145 LSPTDSN--YLM-AVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSE 201 S ++N YL A + + W D+ST + + RL + + P E++ Sbjct: 246 DSDAENNVVYLHGASSSTSNRIGVVWSDLSTAELYAGSISPSRLPELLSSLRPVELVVEN 305 Query: 202 KELSHAEYKSLFETLGNVAV-AQPNVFFDHS-------------------ISESRIADYY 241 L + + V+V A P FDH +S + D Sbjct: 306 AALKDLVRQVYGDQDVPVSVNAPPPPPFDHDRLFDVKRVDGAQPFQPEPLLSPASKLDIL 365 Query: 242 NITTVDTF-------GSFSQVEKTAAAAAISY-----------IKKTQMVNKPTIGY--- 280 N+ + F + + +E A +++ IK + ++P + Sbjct: 366 NLPLLHQFMNAAAAVPAVTALEANAINGMLAWLESRYPMPTHRIKLLGLHHRPALDQDPS 425 Query: 281 PEREDIQSTLFIDSAARSNLEILRTLSGSREQS-LLKTIDYSITGAGGRLFAERIASPLT 339 R + +D + + LE+ + G+ S L TI ++ T GGRL + PLT Sbjct: 426 QHRALHHQPMQVDPVSCAALELFEPVPGNAASSTLFATIKHTQTSMGGRLLRRSLMEPLT 485 Query: 340 DSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 D I R D FF+ + N ++ DVPR+L + Sbjct: 486 DIELIRKRQDHTAFFMFDEPRRNRVRSTFGGIKDVPRTLGSI 527 >gi|256078665|ref|XP_002575615.1| hypothetical protein [Schistosoma mansoni] gi|238660857|emb|CAZ31848.1| expressed protein [Schistosoma mansoni] Length = 1116 Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 269/991 (27%), Positives = 437/991 (44%), Gaps = 196/991 (19%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 EE TP MRQ+ E+KS D ++F+++G FYE++ DA++ + LG+ K Sbjct: 122 EEFKTKQTPGMRQWWELKSRYTDVILFFKVGKFYEMYHMDAMIGVKELGLVFMK------ 175 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEA------KKRGNKSLVRRNVVR 132 CG P +L++ G+++A EQ ES ++A +K ++ +VRR V + Sbjct: 176 GSFAHCGFPEVAFPRMADQLVRKGYKVARIEQTES-IDAMNERCKRKSSSEKVVRREVCQ 234 Query: 133 LVTPGTLTEDQL----LSPTDSNYLMAVARIRTE------WAIAWIDISTGIFKISTSNH 182 ++TPGT T L+ DS +L+AV + + I ++ STG I Sbjct: 235 IITPGTCTASTRDLINLAHPDS-FLLAVVESHGDKSYPFAFGIGLLNASTGKINIGQFLD 293 Query: 183 DRLISDI---MRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQ---PNVFF---DHSIS 233 DR S + + P + E+ + + KSL +T + + P F +++ Sbjct: 294 DRHCSRLRTFLSHYPPNQLLIERGTAGSAIKSLIKTSLSCVPTEFLTPTKQFWSAKNTVQ 353 Query: 234 ESRIADYYNITTVDTFGSFSQVEKTAA--------------------------------- 260 E ADY+ T +T + V K ++ Sbjct: 354 ELETADYFPKQTSNTTVDSNHVSKVSSFPDKENWPDVLLNMLSEDDPLGRTVKSEWELAF 413 Query: 261 --AAAISYIKKTQMVNKP--TIGY-------------PEREDIQSTLFIDSAAR------ 297 A+ Y + ++++ ++G+ +R LF D+ ++ Sbjct: 414 RCLGALIYYLRYCLIDREVLSLGFIDVYVPIDMKNANSQRSPGSIELFYDTQSQMVLDNI 473 Query: 298 --SNLEILR-TLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFF 354 SNL+I+R + GS+E SLL+ ++ T G RL + I +P + I R +I Sbjct: 474 TLSNLDIIRNNVDGSQEGSLLQRLNTCCTFFGRRLLRQWITAPPCNPNVIRQRQLAIENL 533 Query: 355 IQNPILINPIQKILKSSPDVPRSLSRL-----KIGRGEPKDIAVIRDGIR-SGINILNLF 408 I +I +++ L PD+ R ++++ K + P A+I + ++ S NI++ Sbjct: 534 ISISDIIPKLREKLAQLPDLERLITKIHLLGSKGDKNHPDSRAIIFEEVQYSRKNIIDFV 593 Query: 409 LKNDLPEELRGAVEKLKKLPQS---LEKTLS-SMLSDDLPTF----------------KR 448 D E + ++ P S L+K ++ + L + P KR Sbjct: 594 ATLDGFELSYKIIHEINHYPLSSAYLKKLVTLTNLGGNFPDITEKINYFKNAFDAEKAKR 653 Query: 449 DGGFLRD-GADASLDETRSLRDQSKRIIASLQ---LKYAEE--TKIKNLKIKHNNNLGYF 502 +G + G D DE+ S + KRI+ + LK+++ T++ N Y Sbjct: 654 EGRITPEPGIDPEYDESLS---EIKRIVEDMDRFLLKWSKTFGTRLAYWGTGRNR---YQ 707 Query: 503 IEVTSSSASVLKK--DLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 IE+ S AS + L S+ + + R T S + + EL E R + S + Sbjct: 708 IEIPESLASRVPNSWQLSSQRKGVKRYTCSETQEWLS-ELTAAEERKDASLRSIMQHIFS 766 Query: 561 SFEILSNAIIEQSESLDN---ASQVIAIIDISIALAILAKEQN--YCRP-IID--NSTNF 612 SF SES + A +A +D IAL + + + C P ID +ST Sbjct: 767 SF----------SESFTHWHMAMSCLAELDCIIALYLYSTNASDVMCLPEFIDLNSSTEP 816 Query: 613 IVK--DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDK--------------NSGKLWLLT 656 +++ DG HP + T S I+ND L + N+ + L+T Sbjct: 817 LLEIVDGIHPCLINTF---SGGDIISNDIKLGTTSSMINSPTQHHTLHDMFNNASVILVT 873 Query: 657 GPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVE 716 GPNMGGKST +RQ AL+VI+A +G +PA + VD++FSR+G++D + SG STF+VE Sbjct: 874 GPNMGGKSTLMRQAALLVILAHLGCRIPAKSCKLTPVDRIFSRLGASDRMLSGESTFLVE 933 Query: 717 MIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETN-------RCRGLLA 769 + ETASIL+ T S V++DE+GRGT+T DG ++A A + YL + N R L + Sbjct: 934 LSETASILHHITPHSLVLMDELGRGTSTHDGSALAGAVVSYLAKPNGRFFNGSGPRTLFS 993 Query: 770 THFHELTDLSKSLKRF--------------HNATLQVSDSN-----EGIIFLHKVIPGIA 810 TH+H L D + R H A + ++S E I FL+K IPG Sbjct: 994 THYHSLVDQVANKDRSTSDEDINHLCIGLGHMACMVEAESESTNGLENITFLYKFIPGAC 1053 Query: 811 DHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 SYG +LA LP+ VI K FEK Sbjct: 1054 PKSYGFNAARLAMLPDKVIRLGLAKAKEFEK 1084 >gi|261188295|ref|XP_002620563.1| DNA mismatch repair protein Msh3 [Ajellomyces dermatitidis SLH14081] gi|239593242|gb|EEQ75823.1| DNA mismatch repair protein Msh3 [Ajellomyces dermatitidis SLH14081] Length = 1143 Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 239/893 (26%), Positives = 427/893 (47%), Gaps = 116/893 (12%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK---------- 75 P ++ I+IK + D+++ +G + F +DA +A++ L I GK Sbjct: 230 APAPQKIIDIKKNHMDTVLVVEVGYKFRFFGEDARIAAKELSIVCIP-GKLRFDEHPSEA 288 Query: 76 HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLV 134 HL + +PVH + ++++L+ G+++ + Q+E + L+A + R + L Sbjct: 289 HLSR-FASASIPVHRLHVHVKRLVAAGYKVGVVRQLETAALKAAGDNRNAPFVRKLTNLY 347 Query: 135 TPGTLTED--QLLSPTDSN--------YLMAVARIRTEWAIAWIDISTGIFKISTSNHDR 184 T GT +D L P+ S+ YL+ + + + GI + + D Sbjct: 348 TKGTYIDDVEGLEGPSVSSGSASTSTGYLLCMTESNAKGCGNDEKVHVGIVAVQPATGDV 407 Query: 185 LISD-------------IMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFD-- 229 + D ++ I P E + E+S A K + G ++ NVF D Sbjct: 408 IYDDFEDGFMRSEIETRLLHIAPCEFLIV-GEMSKATEKLVQHLSG----SKTNVFGDKV 462 Query: 230 --HSISESRIADYYNITTVDTFGSFSQVEKTAA--AAAISYIKKT-QMVNKPTI------ 278 +S+S+IA + + V +F + K A AAA + ++K ++ TI Sbjct: 463 RVERVSKSKIAAAESHSHVSSFYAGRMKAKGAVGDAAANNLLEKVLKLPEDVTICLSSMI 522 Query: 279 ---------------GYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQSLLKTIDYSI 322 Y + +S + ++ +NLEI + + + + SL T+D + Sbjct: 523 KHMSEYGLEYIFDLTKYFQPFSARSHMLLNGNTLTNLEIYQNQTEHTSKGSLFWTLDRTK 582 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP---ILINPIQKIL-KSSPDVPRSL 378 T G RL + + PL D +++ R+ ++ +Q+P + I ++ +L K D+ +SL Sbjct: 583 TRFGQRLLRKWVGRPLLDKSELEERVAAVEE-LQDPSKTVQIERLKGLLSKIKADLEKSL 641 Query: 379 SRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKK----LPQSLEKT 434 R+ GR ++ + +++ I + ++ PE+L + + + LP + Sbjct: 642 IRIYYGRCTRPELLTV---LQTLQLIADEYVHLKSPEDLGFSSPTINRAIAALPAIRKDV 698 Query: 435 LSSMLSDDLPTFKRDGG--FLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK--- 489 ++ + + K+D F R+ +ET + +S IA +Q + E + Sbjct: 699 VTYLNKINAQAAKKDDKYCFFREA-----EETDEI-TESNLGIADVQHRLKEHCAVAAEI 752 Query: 490 --NLKIKHNNNLG--YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 K+++ G Y IEV +S ++ K + + R I ++RF T E++ Sbjct: 753 LGKKKVQYTTVAGIEYLIEVENSPYNL--KKVPASWRKI--SGTKKVSRFHTPEVVQY-M 807 Query: 546 RITNATNSALLIELE-SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP 604 R + AL + +F L I + +S + +A +D ++LA +A + Y +P Sbjct: 808 RERDQYKEALAAACDKAFHALLADISTKYQSFRDCIVALATLDCLLSLANIASQPGYVKP 867 Query: 605 IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 + T V+ GRHP+VE+ L ++ ND +L N + L+TGPNMGGKS Sbjct: 868 TYTDETRISVQRGRHPMVEQLLLDS----YVPNDIELHT----NKTRALLVTGPNMGGKS 919 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 +++RQ ALI IM Q+GSYVPA A +G++D +++R+G+ DN+ +G STFMVE+ ETA IL Sbjct: 920 SYVRQVALICIMGQIGSYVPAESATLGMLDAVYTRMGAFDNMLAGESTFMVELSETADIL 979 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR 784 QAT +S VILDE+GRGT+T DG++IA A ++Y+ R L TH+ L+ L++ + Sbjct: 980 KQATPRSLVILDELGRGTSTHDGVAIAQAVLDYMVRNLRSLTLFITHYQNLSSLAREFPK 1039 Query: 785 --FHNATLQVSDS---NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 N ++ ++S I FL++V G+A SYG+ V +LA +P +V+ A Sbjct: 1040 GELRNVHMKFTESGMDGRDITFLYEVGEGVAHRSYGLNVARLAHVPTSVLDVA 1092 >gi|224047358|ref|XP_002195963.1| PREDICTED: mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli) [Taeniopygia guttata] Length = 872 Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 171/578 (29%), Positives = 279/578 (48%), Gaps = 54/578 (9%) Query: 285 DIQSTLFIDSAARSNLEILRTL--SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDST 342 D+ + +D+AA L + ++ + + QSL ++ T G RL + I PL D T Sbjct: 234 DLSQYMVLDNAAVQALNLFQSSVENANTAQSLAGLLNKCRTPQGQRLVNQWIKQPLMDKT 293 Query: 343 KINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSG 401 +I RL+ + F+ +P L +Q+ +L+ PD+ R + + +D + I Sbjct: 294 RIEERLNLVEAFVMDPELRQCLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRMFQAINQL 353 Query: 402 INILNLFLKNDLPEE----------LRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGG 451 N++ K++ + L K + +E TL D+ + Sbjct: 354 PNVVQALEKHEGAHQMLLLAVFITPLNDICSDFSKFLEMIETTL------DMEKVENHEF 407 Query: 452 FLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEVTSS 508 ++ D +L E R ++ + + SL A+E + K++K++ N+ G+ VT Sbjct: 408 LVKASFDPNLTELREKMNELEEKMQSLLKTAAKELGLEAGKSIKLESNSQFGHHFRVTCK 467 Query: 509 SASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNA 568 L+ + SK I T N +FT +L + N + E +E +A Sbjct: 468 EEKALRNN--SKYGII--DTQKNGVKFTNSKL--------STINEEYIRNREEYEEAQDA 515 Query: 569 IIEQ--------SESLDNASQVIAIIDISIALAILAKEQN--YCRPII--DNSTNFIVKD 616 I+++ +E + + VIA +D ++ A ++ Y RP++ ++K Sbjct: 516 IVKEIINIASGYAEPIQTMNDVIAQLDAIVSFAHVSNGAPVPYVRPVVLEKGQGRIVLKG 575 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 RHP +E Q FI ND +K ++TGPNMGGKST++RQ +IV+M Sbjct: 576 ARHPCIEV----QDEVAFIPNDITF----EKGKQMFHIITGPNMGGKSTYIRQTGVIVLM 627 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+G +VP A I IVD + +RVG+ D+ G STFM EM+ETASIL AT S +I+D Sbjct: 628 AQIGCFVPCESAEITIVDCILARVGAGDSQLKGVSTFMAEMLETASILRTATENSLIIID 687 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSN 796 E+GRGT+T DG +AWA EY+ + ATHFHELT L+ + +N + S+ Sbjct: 688 ELGRGTSTYDGFGLAWAISEYIASKICGFAMFATHFHELTALADQVPTVNNLHVTALTSD 747 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYD 834 + + L++V G+ D S+GI V +LA P VI A + Sbjct: 748 DTLTMLYRVKEGVCDQSFGIHVAELAAFPKHVIESARE 785 >gi|302418756|ref|XP_003007209.1| DNA mismatch repair protein msh-2 [Verticillium albo-atrum VaMs.102] gi|261354811|gb|EEY17239.1| DNA mismatch repair protein msh-2 [Verticillium albo-atrum VaMs.102] Length = 922 Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 232/876 (26%), Positives = 408/876 (46%), Gaps = 102/876 (11%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD----IPM 83 +R + + ++ D++ + GD+Y +DA +R + T T + LG+D +P Sbjct: 15 FIRYFKSLPEVHEDTIRIFDRGDWYTAHGEDANFIARTVYKT-TSVVRQLGRDDKTGLPS 73 Query: 84 CGVPVHTANHYIQK-LIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL--T 140 + V ++++ L K+ R+ I + + K VV+ +PG L Sbjct: 74 VTMTVTVFRQFLREALYKLSKRVEIYQSTSGRMNWK-----------VVKQASPGNLQDV 122 Query: 141 EDQLLSPTDSNYLMAVARIRTEWA------IAWIDISTGIFKISTSNHDRLISD----IM 190 E++L ++ ++ +I + + + + D S +S + L S+ ++ Sbjct: 123 EEELGGQFEAAPMILAVKITAKASEARSVGVCFADASVRELGVSEFLDNDLYSNFEALLI 182 Query: 191 RIDPREIIF----SEKELSHAEYKSLFETLGNVAVA---QPNVFFDHSISESRIADYYNI 243 ++ RE + +EK+ E L + + N VA + V F E +A Sbjct: 183 QLGVRECLIQADKAEKDKRDPELTKLRQIIDNCGVAVSERSAVEFGTKDIEQDLARLLKD 242 Query: 244 TTVDTFGSFSQVE-KTAAAAAISYIKKTQMVNKPT-IGYPE--REDIQSTLFIDSAARSN 299 T Q E K + +A + IK +++ P+ G + + D+ + +D+AA Sbjct: 243 ERAVTL--LPQTEMKLSMGSAAALIKYLGVLHDPSNFGQYQLYQHDLAQFMKLDAAALKA 300 Query: 300 LEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP 358 L ++ G++ S+ +++ T G RL ++ + PL I R + F+ + Sbjct: 301 LNLMPGPRDGAKSMSVYGLLNHCKTPNGSRLLSQWLKQPLMSKQDIERRQQLVEAFVSDT 360 Query: 359 ILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIA-----VIR-DGIRSGI-NILNLFLK 410 L +Q+ L+S PD+ R R + + +D+ +IR G + +++ + Sbjct: 361 ELRQTMQEEHLRSVPDLYRLAKRFQRKKANLEDVVRAYQVIIRLPGFLGTLEGVMDEAYR 420 Query: 411 NDLPE----ELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRS 466 + L E +LR + L KL + +E T+ DL R ++ D SL R Sbjct: 421 DPLDEAYTSKLRTLSDSLVKLQEMVETTV------DLDALDRHEYVIKPEFDDSLRIIRK 474 Query: 467 LRDQSKRIIASLQLKYAE---ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRF 523 D++KR I K A + K K + ++++ GY + +T + A ++ +K + Sbjct: 475 KLDKAKRDIDQEFNKAAHDLGQEKEKKIFLENHKVHGYCMRLTRTEAGCIR----NKSGY 530 Query: 524 IHRQTMSNLTRFTTLEL------IDLENRITNATNSALLIELESFEILSNAIIEQSESLD 577 T N FTT L D +++ N T ++L+ E+ ++E+ Sbjct: 531 QECSTQKNGVYFTTRNLQNLRREFDQQSQNYNRTQASLVNEVVGVAASYCPVLEK----- 585 Query: 578 NASQVIAIIDISIALAILAKEQ--NYCRPIID--NSTNFIVKDGRHPIVEKTLKQQSSKP 633 + V+A +D+ I+ A + Y RP + ++K+ RHP +E Q Sbjct: 586 -LAGVLAHLDVIISFAHCSVHAPIEYVRPKMHKRGEGQTVLKEARHPCLE----MQDDVQ 640 Query: 634 FIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIV 693 FI ND +L+ K+ ++TGPNMGGKST++RQ +I +MAQ+G +VP + A + I Sbjct: 641 FITNDVELT----KDKSSFLIITGPNMGGKSTYIRQIGVIALMAQVGCFVPCAEAEMTIF 696 Query: 694 DKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWA 753 D + +RVG++D+ G STFM EM+ETA+IL AT +S +I+DE+GRGT+T DG +AWA Sbjct: 697 DSILARVGASDSQLKGVSTFMAEMLETANILKSATAESLIIIDELGRGTSTYDGFGLAWA 756 Query: 754 TIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN--ATLQVSDSNEG-----IIFLHKVI 806 E++ + C + ATHFHELT L+ + N T +S S EG + L+KV Sbjct: 757 ISEHIVKEIGCSAMFATHFHELTALADQHAQVKNLHVTAHISGSEEGDAKREVTLLYKVE 816 Query: 807 PGIADHSYGIQVGKLAGLPNTVI---SRAYDILKTF 839 GI D S+GI V +L P+ V+ R D L+ F Sbjct: 817 DGICDQSFGIHVAELVRFPDKVVRMAKRKADELEDF 852 >gi|330944839|gb|EGH46711.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. pisi str. 1704B] Length = 437 Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 150/446 (33%), Positives = 235/446 (52%), Gaps = 18/446 (4%) Query: 264 ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSIT 323 +SY K+TQ P + E + T+ +D+A+R NLE+ LSG R+ +L +D T Sbjct: 4 LSYAKETQRTALPHLRSLRHERLDDTVILDAASRRNLELDTNLSGGRDNTLQSVMDRCQT 63 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKI 383 G RL + PL D T + R SI F++ N +Q LK D+ R L+R+ + Sbjct: 64 AMGTRLLTRWLNRPLRDLTILQARQTSITCFLERYRFEN-LQPQLKEIGDIERILARIGL 122 Query: 384 GRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 P+D+A +RD + + + D P L+ + P+ L L + D+ Sbjct: 123 RNARPRDLARLRDALSALPELQQAMTDLDAPH-LQQLAQTASTYPE-LADLLQRAIIDNP 180 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 P RDGG L+ G DA LD+ +SL + + + + L+ + T + NLK+ +N GYFI Sbjct: 181 PAVIRDGGVLKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLGNLKVGYNRVHGYFI 240 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 E+ S A D +I RQT+ RF T EL + E++ +A + AL E +E Sbjct: 241 ELPSKQAEQAPAD------YIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKMLYE 294 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVE 623 L +I L + + +A +D+ LA A + P ++ GRHP+VE Sbjct: 295 TLLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLDLNCPRFVAEPCMRIEQGRHPVVE 354 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 + L S PF+AND L +S ++ ++TGPNMGGKST++RQ ALIV++A +GS+V Sbjct: 355 QVL----STPFVANDLALD-----DSTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFV 405 Query: 684 PASYAHIGIVDKLFSRVGSADNLASG 709 PA+ + +VD++F+R+GS+D+LA G Sbjct: 406 PAASCELSLVDRIFTRIGSSDDLAGG 431 >gi|331247874|ref|XP_003336563.1| mutS family DNA mismatch repair protein [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309315553|gb|EFP92144.1| mutS family DNA mismatch repair protein [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1128 Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 238/876 (27%), Positives = 408/876 (46%), Gaps = 102/876 (11%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 +++ S TP Q+ EIK F EL+ DAL+ + + +TKR K + Sbjct: 237 KKDWASMTPFEVQFWEIKR-----------SKFAELYEGDALIGHQEFDLKITKRVKMVI 285 Query: 79 K-------DIPMCGV--PVHTANHYIQKL---IKIGHRIAICEQIESPLEAKKRGNKSLV 126 + D+ M PV + L ++ + + + P + K G K +V Sbjct: 286 RYILTYPSDMTMITTNDPVGKVDQCETALGAEMRNKGSLPTSKYAKPPPQQKGSG-KEIV 344 Query: 127 RRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFKIS---- 178 RR + +VT GT+ + +L+ + L+A+ + + +D +T F ++ Sbjct: 345 RRELRSVVTSGTIVDGNILTDDSATCLLAIKESTNSDLPVFGVIIMDAATAEFNLTHFED 404 Query: 179 TSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGN---VAVAQPNVFFDHSISES 235 ++N L + + R P+EI+ + LS A + L T + + + F + Sbjct: 405 SANRTHLETIMSRFKPKEILHEKSGLSPATLRVLRNTASSDCTWTALKSDEFLEPDECVC 464 Query: 236 RIADYYNIT---TVDTFGSFS-QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLF 291 R+ + + + F SF+ ++E A + + K ++K + ++++ T+ Sbjct: 465 RLTELFQESGGQIPQVFQSFNNKLETMQALGGLLWYLKQLNLDKDLLTC---KNVR-TMH 520 Query: 292 IDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGG-----RLFAERIASPLTDSTKINT 346 +D S+LE+L++ GS E LLK ++ +T G RLF + SPL D I Sbjct: 521 LDGKTISDLELLQS-DGSEESRLLKLLNRCVTSFGNFNFRKRLFRHWLCSPLQDGDAIRA 579 Query: 347 RLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGE-PKDIAVIR--DGIRSGIN 403 RLD+++F + NP L PD+ R +SR+ G P + V++ + I S I Sbjct: 580 RLDAVDFLMNNPSFEEKFS-TLSGLPDLERLISRVHAGACTVPNFLKVLKAFEKIYSTIQ 638 Query: 404 ILNLFLKND---LPEELRGAVEKLKKLPQSLEKTLSSMLSDD----LPTFKRDGGFLRDG 456 L + L +EL A+ KL Q+LE + L+DD LP +D + Sbjct: 639 ELRQLIDETPAMLLKELMDALPDTDKLLQNLEDMFT--LNDDRRELLPLEGKDESY---- 692 Query: 457 ADASLDETRSLRDQSK-RIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKK 515 D +L+E R K + A+ +L ++ K++ IK + +V + S Sbjct: 693 -DMALEEEREAEKALKAELKAAKKLLKTDDVVYKDIGIKDIYQIQVSAKVKAPSNWTKMS 751 Query: 516 DLESKDRFIHRQTMSNLTRF------TTLELIDLENRITNATNSALLIELESFEILSNAI 569 + R+ Q+ + + + L D ++ A + LI L+ + Sbjct: 752 GTKDCARYYSPQSAQLVKKLKQAREKKSCALKDFHLKVFLAFDENYLIWLQ--------V 803 Query: 570 IEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVK--DGRHPIVEKTLK 627 ++ LD V+++ SI L + CRP I +S +VK RHP T+ Sbjct: 804 VKSVAQLDC---VLSLAKASIGLG-----ETTCRPKIVDSDEAMVKFVTLRHPC---TVG 852 Query: 628 QQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASY 687 + S FI+ND + + ++ LLTGPNM GKST LR + I+AQ+G YVPA Sbjct: 853 RDDSD-FISNDVSVG----GDECRMILLTGPNMAGKSTLLRMTCVATILAQIGCYVPAES 907 Query: 688 AHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDG 747 A I VD++ +R+G++D++ + STF VEM + IL +AT++S VILDE+GRGT+T DG Sbjct: 908 AVISPVDRICTRMGASDHIFAHASTFKVEMDDARKILKEATSKSLVILDELGRGTSTFDG 967 Query: 748 LSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL--QVSDSNEGIIFLHKV 805 +IA+A + L + C G ATH+ LT+ ++ + V + ++FL+K+ Sbjct: 968 HAIAFAVLHRLATHSNCLGFFATHYSALTEDFRAHANIATKYMLTNVDEVTREVVFLYKL 1027 Query: 806 IPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 G++ SYG V K+AG+P+ ++ RA I + FEK Sbjct: 1028 SSGVSPRSYGPHVAKMAGIPSKIVQRAISISEKFEK 1063 >gi|149246718|ref|XP_001527784.1| hypothetical protein LELG_00304 [Lodderomyces elongisporus NRRL YB-4239] gi|146447738|gb|EDK42126.1| hypothetical protein LELG_00304 [Lodderomyces elongisporus NRRL YB-4239] Length = 1320 Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 230/905 (25%), Positives = 414/905 (45%), Gaps = 115/905 (12%) Query: 8 PQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLG 67 P+ LY Q+ + T +QY EIKS +++VF++ G FYEL+ +DA++A+ Sbjct: 372 PRTLYIPQLAWSK----FTAFEKQYWEIKSQMWNTVVFFKKGKFYELYENDAIIANTKFD 427 Query: 68 ITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGN----- 122 + + G+ ++ + G+P + H+ ++ I G+++A +Q ES L + RG Sbjct: 428 LKIAGGGR---ANMKLAGIPEMSFEHWAKEFISHGYKVAKVDQKESMLAKEIRGGAPGAT 484 Query: 123 --KSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTE------WAIAWIDISTGI 174 + +++R + ++T GTLT+ ++S S Y +++ + E + +A++D ST Sbjct: 485 KEEKIIKRELTGILTGGTLTDLDMISDDMSTYCLSIKEEQMEDGKGKKFGVAFVDTSTSE 544 Query: 175 FKISTSNHD----RLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNV---- 226 + D +L + + +I P+EII + L K L A ++ + Sbjct: 545 LSLIELEDDTECTKLDTLVTQIKPKEIICEKGNLCSIATK----ILKFCAHSKHQIWNHM 600 Query: 227 -----FFDHSISESRI--ADYYNITTVDTFGSF----------SQVEKTAAAAAISYIKK 269 F+D I+ ++ + Y+ +D F + V A +SY+K Sbjct: 601 NPITEFWDVDITLEQLVKSRYFEAENLDDFSKYPDVLVKFKENHDVAFNAFGGLLSYLKT 660 Query: 270 TQMVNK-PTIG----YPEREDIQSTLFIDSAARSNLEILRT-LSGSREQSLLKTIDYSIT 323 ++ ++G Y + S + +D +NLEIL G + +L K ++ + T Sbjct: 661 LKLDQSIMSLGNIKEYKISLNANSHMILDGITLNNLEILHNNYDGGDQGTLFKLLNQATT 720 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPI-QKILKSSPDVPRSLSRLK 382 G R + + PL S IN R DS+ + + + + + I Q L + PD+ R ++R+ Sbjct: 721 PFGKRQLKKWVLHPLIKSEDINARFDSVEYLMGDGLELRSILQDTLANLPDLERLIARIH 780 Query: 383 IGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEK-LKKLPQSLEKTLSSMLSD 441 G K+ + + +L+ L+ E G + K L+ PQ++ + Sbjct: 781 SGTLRFKEFLRVIESFEKIAKVLSQLLEFTNVE--CGVLHKYLRNFPQAMSSHIGEW--- 835 Query: 442 DLPTFKRDGGFLRDGAD-------ASLDETRSLRDQSKRIIASL------QLK-YAEETK 487 D F R A A +DE D S II L QLK Y E + Sbjct: 836 -------DDAFDRVEAKQNIIVPAAGIDEEF---DSSISIINDLEAQLNQQLKEYKREYR 885 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTM---SNLTRFTTLELIDLE 544 + + + + Y IE+ A K+ + QTM S + RF + ++ + Sbjct: 886 SQEICYRDSGKEVYLIEMPVKVA---------KNVPLSWQTMGATSKVKRFWSPKVKQMA 936 Query: 545 NRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY--C 602 ++ + + + N + ++ +A ID +AL +++ + C Sbjct: 937 RKLMEQRELHKSVCDTLKQRMYNKFDKHYQTWMKVITCMANIDCIVALTKVSETMGFPSC 996 Query: 603 RPIIDNSTNFIV--KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 RP + + ++ K+ RHP T K FI ND L ++ + G LLTG N Sbjct: 997 RPEFVETQHGMIDFKELRHPCFVGT------KDFIPNDIKLGGDDEPSFG---LLTGANA 1047 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GKST +R AL VI++Q+G ++PA A + VD++ +R+G+ DN+ G+STF VE+ ET Sbjct: 1048 AGKSTIMRTTALAVILSQIGCFIPAELAKLAPVDRIMTRLGANDNIMQGKSTFFVELSET 1107 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELT---D 777 IL+ AT +S VILDE+GRG ++ DG ++A + + +L + G ATHF+ L + Sbjct: 1108 KKILSNATPRSLVILDELGRGGSSSDGFAVAESVLHHLATHLQSIGFFATHFNSLGLAFE 1167 Query: 778 LSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILK 837 +K A + V ++ + FL+K+ G A S+G+ V + G+ ++ A + Sbjct: 1168 THPQVKPMRMAII-VDQTSRELTFLYKLESGTAPGSFGMNVALMCGISKEIVDNAEVAAR 1226 Query: 838 TFEKL 842 +EK Sbjct: 1227 EYEKF 1231 >gi|46125469|ref|XP_387288.1| hypothetical protein FG07112.1 [Gibberella zeae PH-1] Length = 1105 Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 232/882 (26%), Positives = 404/882 (45%), Gaps = 98/882 (11%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM-- 83 TPM Q++EIK + D+++ +G + F DDA +A++ L I GK + P Sbjct: 203 TPMEIQFLEIKRKHMDTVLIVEVGYKFRFFGDDARIAAKELSIVCIP-GKMRYDEHPSEA 261 Query: 84 -------CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSL-VRRNVVRLVT 135 +PVH + ++L+ GH++ + QIE+ K N++ R + L T Sbjct: 262 HIDRFASASIPVHRLPVHAKRLVAAGHKVGVVRQIETAALKKAGDNRNTPFVRKLTNLYT 321 Query: 136 PGT-------LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSN----HDR 184 GT L + YL+ + + + + ++ GI + + +D Sbjct: 322 KGTYIDENGELDQSGGSGAPSGGYLLCITESKAKGSGTDEKVNVGIIAVQPATGDIIYDH 381 Query: 185 LISDIMRIDPREIIFSEKELSHAEY-------KSLFETLGNVAVAQPNVFFDHSISE--- 234 MR EI +S E+ K + + +++ + NVF D S E Sbjct: 382 FEDGFMR---SEIETRLLHISPCEFLIVGDLTKGTDKLVQHLSGSSTNVFGDRSRVERVP 438 Query: 235 ---SRIADYYNITT---VDTFGSFSQVEKTAA----------------AAAISYIKKTQM 272 + AD Y+ T D +Q E AA +A I+++++ + Sbjct: 439 KEKTMAADAYSHVTQFYADKLKDNAQDETAAALLGKVLKLPEPVTICLSAMINHLQEYGL 498 Query: 273 VNKPTI-GYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSITGAGGRLF 330 + + Y + +S + I+ +LE+ R + E+ SL +D ++T G RL Sbjct: 499 EHIFDLTKYFQSFSTRSHMLINGTTLESLEVYRNSTDHSEKGSLFWALDKTLTRPGQRLL 558 Query: 331 AERIASPLTDSTKINTRLDSINFFI--QNPILINPIQKILKSSP-DVPRSLSRLKIGRG- 386 + + PL D + RL+++ + Q+ ++ ++ +L ++ D+ RSL R+ G+ Sbjct: 559 RKWVGRPLLDQELLEARLNAVEELLNKQSTAPVSQLESLLANTKTDLERSLIRIYYGKCT 618 Query: 387 EPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTF 446 P+ ++V++ R + +D P E + LPQ L+ +S + +L Sbjct: 619 RPELLSVLQALQRVASYYSTIKAPSDAPFSSPLLSEAICSLPQILDTVVSYLERINLVAA 678 Query: 447 KRDG--GFLRDGADASLDETRSLRDQSKRI------IASLQLKYAEETKIKNLKIKHNNN 498 ++D GF RD +T ++D I + + AE+ K K + Sbjct: 679 RKDDKYGFFRDEF-----QTEDMQDHQLGIAHVEHELDGHRAVAAEKIKKKMVDYVTVAG 733 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 + + IEV ++ + + L+RF T E++ + Sbjct: 734 IEFLIEVPNADIKHVPAS------WAKISGTKKLSRFHTPEVLRFITERDQHREALAAAC 787 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRP-IIDNSTN--FIVK 615 ++F+ L +I + L +A +A +D +++L+ +A + Y RP + +ST+ + Sbjct: 788 DKAFKDLLASIASDYQPLRDAVSALATLDCALSLSKVAAQPGYSRPSFLPSSTDPTISIT 847 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 +GRH I E TL+ +I L+ P S L+TGPNMGGKS+F+R ALIV+ Sbjct: 848 NGRHAIAEHTLEGG----YIPFSTTLAHP----SPLAHLITGPNMGGKSSFVRALALIVL 899 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 ++Q+GSYVPA + + D + +R G+ DNL +G STFMVE+ ETA IL A +S VIL Sbjct: 900 LSQVGSYVPADSLSLTLCDAIHTRTGARDNLFAGESTFMVEVSETARILRSAGPRSLVIL 959 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV--- 792 DE+GRGT+T DG +IA A ++++ RC L TH+ L +++ L N ++ Sbjct: 960 DELGRGTSTHDGAAIAQAVLQHVVTETRCLTLFITHYQNLARVAEGLDGVKNVHMKFKAE 1019 Query: 793 --SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 D E + FL++V G+A SYG+ V +LA +P VI A Sbjct: 1020 KGEDGEEEVTFLYEVGEGVAHRSYGLNVARLARIPKKVIDVA 1061 >gi|46123905|ref|XP_386506.1| MSH2_NEUCR DNA mismatch repair protein MSH2 [Gibberella zeae PH-1] Length = 930 Score = 237 bits (605), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 247/950 (26%), Positives = 430/950 (45%), Gaps = 118/950 (12%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLT-----KR 73 E L +R + + +N D++ + GD+Y DA ++ + T + R Sbjct: 6 ELKLDDEGGFIRFFKSLPDVNQDTIRIFDRGDWYTSHGQDANYIAKTVYKTTSVVRQLGR 65 Query: 74 GKHLGKDIPMCGVPVHTANHYIQK-LIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVR 132 H G +P + + ++++ L+K+G RI I + + K ++ Sbjct: 66 NDHTG--LPSVTMTMTVFRQFLREALLKLGKRIEIWQSSSGRMNWK-----------CIK 112 Query: 133 LVTPGTL--TEDQLLSPTDSNYLMAVARIRTEWA------IAWIDISTGIFKISTSNHDR 184 +PG L ED L +S ++ +I + + + + D S +S + Sbjct: 113 QASPGNLQDVEDDLGGQIESAPMILAVKISAKASEARNVGVCFADASVRELGVSEFLDND 172 Query: 185 LISD----IMRIDPREIIF----------SEKELSHAEYKSLFETLGNVAVAQPNVFFDH 230 L S+ ++++ RE + +EK+ A+ K + + G +P F Sbjct: 173 LYSNFEALLIQLGVRECLIQVDKGDKKDENEKDPELAKIKKIIDNCGVAIAERPAGDFGI 232 Query: 231 SISESRIADYYNITTVDTFGSFSQVE-KTAAAAAISYIKKTQMVNKPT-IGYPE--REDI 286 E +A + Q + K A +A S IK ++ P+ G + + D+ Sbjct: 233 RDIEQDLARLLKDERSASL--LPQTDLKLAMGSAASLIKYLGVLQDPSNFGQYQLYQHDL 290 Query: 287 QSTLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKIN 345 + +D+AA L ++ GS+ S+ +++ T G RL A+ + PL +I Sbjct: 291 AHFMKLDAAALKALNLMPGPRDGSKTMSIFGVLNHCKTPVGSRLLAQWLKQPLMSKNEIE 350 Query: 346 TRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIA-----VIR--DG 397 R + F + L +Q+ L+S PD+ R R + G+ +D+ VIR Sbjct: 351 KRQQLVEAFYVDTELRQTLQEEHLRSIPDLYRLSKRFQRGKANLEDVVRAYQVVIRLPGF 410 Query: 398 IRSGINILNLFLKNDLPE----ELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFL 453 I + +++ K+ L E +LR + L KL +E+T+ DL R + Sbjct: 411 IGTFEGVMDENYKDPLDEAYTTKLRDLSDSLGKLQDMVEQTV------DLDALDRHEYII 464 Query: 454 RDGADASLDETRSLRDQSKRII-----ASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSS 508 + D SL R DQ + I AS + E K L+ H + G + +T Sbjct: 465 KADFDKSLRIIRKKLDQLDKDIRAEFTASAKDLGQEADKKIFLETSHKVH-GVCMRLTRQ 523 Query: 509 SASVLKKDLESKDRFIHRQTMSNLTRFTTLEL------IDLENRITNATNSALLIELESF 562 A ++ + ++ T N FTT +L D ++ N T S+L+ E+ Sbjct: 524 EAGCIRNN----SKYQECSTQKNGVYFTTKKLQAYRREYDQLSQNYNRTQSSLVHEV--V 577 Query: 563 EILSNAIIEQSESLDNASQVIAIIDI--SIALAILAKEQNYCRPIID--NSTNFIVKDGR 618 ++ S+ L+ + ++A +D+ S+A A + ++Y RP I I+++ R Sbjct: 578 QVASS----YCPVLERLAGILAHLDVIVSLAHASVHAPESYVRPKIHARGEGQTILREAR 633 Query: 619 HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQ 678 HP +E Q FI ND +L+ DK+S ++TGPNMGGKST++RQ +I +MAQ Sbjct: 634 HPCME----LQDDVQFITNDVELT--RDKSS--FLIITGPNMGGKSTYIRQTGVIALMAQ 685 Query: 679 MGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEI 738 +G +VP + A + I D + +RVG++D+ G STFM EM+ETA+IL AT++S +++DE+ Sbjct: 686 VGCFVPCAEAELTIYDSILARVGASDSQLKGVSTFMAEMLETANILKSATSESLIVIDEL 745 Query: 739 GRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN----------- 787 GRGT+T DG +AWA E++ + C + ATHFHELT L+ + N Sbjct: 746 GRGTSTYDGFGLAWAISEHIVKEIGCSAMFATHFHELTALADQYPQVQNLHVTAHIGGTD 805 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVI---SRAYDILKTFEKLYH 844 A +D+ + L+KV PG+ D S+GI V +L P+ V+ R D L+ F Sbjct: 806 AAASEADAKREVTLLYKVAPGVCDQSFGIHVAELVRFPDKVVRMAKRKADELEDFTT--- 862 Query: 845 HNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 +D+ L Y + ++ L + + +K+K ++ + ALK L Sbjct: 863 -KHEDLGLQYSKQDMEDGSAMLKRVLVEWKDKVKAGDMSREEQVAALKEL 911 >gi|15625578|gb|AAL04169.1|AF412833_1 mismatch repair protein Msh2 [Danio rerio] Length = 936 Score = 237 bits (605), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 186/656 (28%), Positives = 303/656 (46%), Gaps = 80/656 (12%) Query: 285 DIQSTLFIDSAARSNLEILRTLSGSRE-----QSLLKTIDYSITGAGGRLFAERIASPLT 339 D+ + +D+AA ++ L GS + SL ++ T G RL + I PL Sbjct: 295 DLNQYMRLDNAA---VQALNLFQGSCDDATGTHSLAGLLNKCRTPQGQRLVNQWIKQPLI 351 Query: 340 DSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 D KI RLD + F+++ L Q+ +L+ PD+ R + + +D + + Sbjct: 352 DKNKIEERLDLVETFVEDSELRKSCQEDLLRRFPDLNRMAKKFQRQSSNLQDCYRVYQSV 411 Query: 399 RSGINIL----------NLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKR 448 N++ + L L + K + +E TL D+ + Sbjct: 412 GQLPNVVLALERYSGKHQVLLHAAFISPLNDLISDFSKFQEMIETTL------DMNQVEH 465 Query: 449 DGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK------IKNLKIKHNNNLGYF 502 ++ D +L + LR+ R+ ++Q + + K +K++ N +GYF Sbjct: 466 HEFLVKPSFDPTLSD---LRENMDRLEKAMQAALSSAARGLGLEATKTVKLESNAQIGYF 522 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF 562 VT +K L + +F N RFT +L L T + E + Sbjct: 523 FRVTCKE----EKSLRNNKKFTTLDVQKNGVRFTNSKLSSLNEEYTKSR--------EEY 570 Query: 563 EILSNAIIEQ--------SESLDNASQVIAIIDISIALAILAKEQN--YCRPII--DNST 610 E NAI+++ + + ++VIA +D ++ A+++ + RP I S Sbjct: 571 EEAQNAIVKEIISIAAGYVDPVQTLNEVIAQLDAVVSFAVVSHTAPVPFIRPKILEKGSG 630 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGK--LWLLTGPNMGGKSTFLR 668 ++K RHP VE Q FI ND SG+ ++TGPNMGGKST++R Sbjct: 631 RLVLKAARHPCVEA----QDEVAFIPNDVTFI------SGEKMFHIITGPNMGGKSTYIR 680 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q +IV+MAQ+G +VP A + +VD + +RVG+ D+ G STFM EM+ETA+IL A+ Sbjct: 681 QVGVIVLMAQIGCFVPCDEAELSVVDCVLARVGAGDSQIKGVSTFMAEMLETAAILRSAS 740 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA 788 S +I+DE+GRGT+T DG +AWA EY+ + L ATHFHELT L++ + N Sbjct: 741 EDSLIIIDELGRGTSTYDGFGLAWAISEYIATRLKSFCLFATHFHELTALAQQVPTVRNL 800 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 + ++ + L+KV G+ D S+GI V +LA P VI+ A + E+ + Sbjct: 801 HVTALTTDSTLTMLYKVKKGVCDQSFGIHVAELASFPKHVIANAREKALELEEF-----Q 855 Query: 849 DMRLYYPEIQTKESKNNLSKND-----KLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 D+ E K K + K + + F+ K+K + +D MS + L +KA Sbjct: 856 DISSVGEEAGPKAKKRCMEKQEGEKIIEAFLAKVKPMPVDGMSDKAVKEELRKLKA 911 >gi|330840928|ref|XP_003292459.1| hypothetical protein DICPUDRAFT_50444 [Dictyostelium purpureum] gi|325077299|gb|EGC31021.1| hypothetical protein DICPUDRAFT_50444 [Dictyostelium purpureum] Length = 919 Score = 237 bits (604), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 194/666 (29%), Positives = 318/666 (47%), Gaps = 89/666 (13%) Query: 282 EREDIQSTLFIDSAARSNLEIL------------RTLSGSREQSLLKTIDYSITGAGGRL 329 E+ D+ + +DSA+ L I+ + + +++QSL ++ T G RL Sbjct: 302 EKFDLNKYMKLDSASFRGLHIIDLKEHNSSGLPNSSATSTKDQSLYNLLNQCNTPMGSRL 361 Query: 330 FAERIASPLTDSTKINTRLDSINFFIQNPILINPIQ-KILKSSPDVPRSLSRLKIGRGEP 388 + + PL D+ +I RL+ + F + L ++ LK D+ R +L + Sbjct: 362 LLQWVKQPLLDTEEIEMRLNFVETFFNDIELRQSLRSNDLKKIGDLDRLSKKLHGQKASL 421 Query: 389 KD----------IAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM 438 +D + V+ + + LK + + L + +K +EKT+ Sbjct: 422 EDCVNLYGIVNRLPVVLSTLNGHSGVHQEMLKANFIDSLESIINDFQKFCAMVEKTIDLD 481 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK--HN 496 L+++ + +R D +L E + L+D++ + I ++K A++ + K+K ++ Sbjct: 482 LANEKHEY-----VIRSSFDEALAEIQKLKDKTSQKIEGFRIKTADKLDLDESKVKLHYS 536 Query: 497 NNLGYFIEVTSSSASVLKKD---LESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 GY + ++ +KD L K FI T + RF+ E+ +L N T Sbjct: 537 EKDGYLLRIS-------RKDEVKLRDKKEFIIYATQKDGVRFSIKEINNL-----NETYK 584 Query: 554 ALLIELESFEI-LSNAIIEQSES----LDNASQVIAIIDISIALAILAK--EQNYCRPII 606 L E + + L+ ++ + S +++ S +IA +D+ + +A ++ + RP I Sbjct: 585 KLSAEYANKQDGLAKRTLQIAASFVPLIEDLSSLIATLDVFVTMAHISSIAPTPFVRPEI 644 Query: 607 D--NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 + N ++ GRHP VE Q FIAND +L + + ++TGPNMGGKS Sbjct: 645 HPLGTGNTVIFGGRHPCVE----TQDGVSFIANDIELI----REESQFQIITGPNMGGKS 696 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 TF+RQ LIV+MAQ+G +VPA A + +VD + SRVG+ D+ G STFM EM+ET+ IL Sbjct: 697 TFIRQVGLIVLMAQIGCFVPAQKAIVSVVDCILSRVGAGDSQLRGVSTFMAEMLETSYIL 756 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRG--LLATHFHELTDLSKSL 782 AT S +I+DE+GRGT+T DG +AW EY+ N+ G L ATHFHELT L+ + Sbjct: 757 KVATKNSLIIIDELGRGTSTYDGFGLAWGIAEYI--CNQIGGFCLFATHFHELTILADII 814 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 N + S N L+KV G D S+GI V LA P VI A Sbjct: 815 PVVKNLHVSASTENNTFTLLYKVESGACDQSFGIHVAVLADFPQQVIETA---------- 864 Query: 843 YHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTL 902 +L E+++ ES N L +N F+E+ K ++ + + + Y + L Sbjct: 865 --------KLKAKELESFES-NTLKQNHNSFLEEFKEIDFNTQNTTES----YEIVKSLL 911 Query: 903 EKYSTD 908 KYS D Sbjct: 912 SKYSID 917 >gi|156841571|ref|XP_001644158.1| hypothetical protein Kpol_1053p38 [Vanderwaltozyma polyspora DSM 70294] gi|156114794|gb|EDO16300.1| hypothetical protein Kpol_1053p38 [Vanderwaltozyma polyspora DSM 70294] Length = 959 Score = 237 bits (604), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 227/805 (28%), Positives = 370/805 (45%), Gaps = 109/805 (13%) Query: 145 LSPTDSNYLMAVARIRTE-WAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIF---S 200 L+ D N L+ V I T + I +DI + + L S ++++ RE + + Sbjct: 148 LNSQDGNCLLGVTFIDTSNYKIGMLDI------VDNEVYSNLESFLIQLGVRECLLPDLT 201 Query: 201 EKELSHAEYKSL---FETLGNVAVAQPNVFFDHSISESRIA----DYYNITTVDTFGSFS 253 + E + E K + + G VA N F SES +A D +I+ F F+ Sbjct: 202 KSEGNMNEIKKITGVIDRCGCVATFVRNSDFSDKDSESDLAKLIGDELSISLPQKFSKFA 261 Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPE--REDIQSTLFIDSAARSNLEILRTLSG--- 308 ++ A + Y++ Q + +G E + ++ + +D++A L + S Sbjct: 262 L---SSFNALVHYLELLQ--EQDQLGKYELIQHSLKELMKLDASAMKALNLFPATSSQSI 316 Query: 309 -------------SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFI 355 S+ SL + +++ T AG RL E I PLT +I R D + + I Sbjct: 317 VPLLTAGYSNSNSSKVTSLFQLLNHCKTNAGVRLLNEWIKQPLTSLAEITKRHDLVEYLI 376 Query: 356 QNPILINPIQ-KILKSSPDVPRSLSRLKIGRGEPKDIAVIRD---GIRSGINILNLFLKN 411 L +Q L PD+ R +L G +DI + I L FL++ Sbjct: 377 DQLELRQILQTDFLPVVPDIRRITKKLN-KNGNLEDILKLYQFCIKIPEISKTLESFLED 435 Query: 412 DLPEE-------------LRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFL-RDGA 457 +E + L KL + +E T+ DL ++ F+ + Sbjct: 436 SQTDENIKTLVKESWLDPMLSYTSPLSKLQEMVETTV------DLDAYEEHNEFMIKVEF 489 Query: 458 DASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVLK 514 + L + R D + I + ++ +E+ K LK+++++ G+ + +T + Sbjct: 490 NEELAKIRQELDMMRDQIHTAHIQASEDLGFDPDKKLKLENHHLHGWCMRLTRNDG---- 545 Query: 515 KDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT------NATNSALLIELESFEILSNA 568 K+L +++I T+ F+T EL ++ + + SAL+ E+ + + Sbjct: 546 KELRKHEKYIELSTVKAGIYFSTSELREVARETSLLQKEYDRQQSALVKEIVNITLTYTP 605 Query: 569 IIEQSESLDNASQVIAIIDI--SIALAILAKEQNYCRPII-----DNSTNFIVKDGRHPI 621 ++E+ S ++A +D+ S A A Y RP + + T I RHP+ Sbjct: 606 VLEK------ISIILANLDVICSFAHASSYAVIPYIRPKMYDIGSERKTRLI--SSRHPV 657 Query: 622 VEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS 681 +E Q FIAND +L +K + ++TGPNMGGKST++RQ +I +MAQ+G Sbjct: 658 LE----MQDDLTFIANDVNL----EKGTSDFLIITGPNMGGKSTYIRQVGVITLMAQIGC 709 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VP A I IVD + RVG+ D+ G STFMVEM+ETASIL A+ S +I+DE+GRG Sbjct: 710 FVPCDEADIAIVDAILCRVGAGDSQLKGVSTFMVEMLETASILKNASTNSLIIIDELGRG 769 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATL-----QVSDSN 796 T+T DG +AWA E++ +C L ATHFHELT LS L N + Q +DSN Sbjct: 770 TSTYDGFGLAWAISEFIASQIKCFALFATHFHELTSLSDKLSNVKNMQVVAHIEQNADSN 829 Query: 797 E---GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 + I L+KV PG++D S+GI V ++ P+ ++ A ++ E L N+K + Sbjct: 830 QDKDDITLLYKVEPGVSDQSFGIHVAEVVQFPDKIVKMAKRKVEELEDLKDANEKLKKTR 889 Query: 854 YPEIQTKESKNNLSKNDKLFVEKIK 878 + E N L K K + EKIK Sbjct: 890 LSPKEINEGNNELKKILKEWSEKIK 914 >gi|300706132|ref|XP_002995367.1| hypothetical protein NCER_101770 [Nosema ceranae BRL01] gi|239604422|gb|EEQ81696.1| hypothetical protein NCER_101770 [Nosema ceranae BRL01] Length = 920 Score = 237 bits (604), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 232/853 (27%), Positives = 384/853 (45%), Gaps = 127/853 (14%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP +Q+ EIK D++VF++ G FYEL+ DA +AS LT+R ++ M G Sbjct: 138 TPFEKQFWEIKKDYWDTIVFFKKGKFYELYEKDADIASSLFNFRLTERV-----NMRMAG 192 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKS----LVRRNVVRLVTPGTLTE 141 P + + +I K ++ G ++A +Q E+ + K R + ++RR + ++T GT+ + Sbjct: 193 FPESSLDDWICKFLEAGFKVARVDQSENMIAKKIREKGAVKDKIIRRELKEVITQGTIYD 252 Query: 142 DQLLSPTDSNYLMAV----------ARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMR 191 + L + Y + + ++I D +T T D +++ Sbjct: 253 NNHLKTPYAVYTLVIRENQICENANCTFSLHFSILLFDAATLQIFYKTFCDDSNYNNLKN 312 Query: 192 IDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGS 251 I + I+ ++ LS +Y + N +F ++ ++ N + +G Sbjct: 313 ICVKYIV--KEYLSQKKYP----FISNYVKPDDKIF-------NKNLEFLNESENICYGF 359 Query: 252 FSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE 311 K Y+ + + + + E ++S + +DS + NL++L S Sbjct: 360 LYNYMK--------YLNRENFL--KNCRFFKFECLESIMILDSCSIINLDLL---SDKHN 406 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 ++L I+ T G R + SPL+D I R IN+F I ++PI +I KS Sbjct: 407 KTLFNVINNCSTPFGQRKLQSWMLSPLSDGNSIRKRQCLINYFAN--INLSPIIEIFKSL 464 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSL 431 D R S+L+ G + +D+ R+ + LNL +K EL+ K P ++ Sbjct: 465 GDFERLFSKLQSGHSKFRDL-------RTFMEKLNLVVKIYQIIELQ-ICNKNGPAPNTI 516 Query: 432 EKTLSSMLSD------------DLPTFKRDGGF--------LRDGADASLDETRSLRDQS 471 + L D DL F ++ + G + S +E SL ++ Sbjct: 517 KINCFVDLYDHNNLSVSYAPLHDLKKFIQNYQLKYYINREEIEPGKENS-EEIASLINRK 575 Query: 472 KRIIASLQLKYAEETKIKNLKIKHNN--NLG---YFIEVTSSSASVLKKDLESKDRFIHR 526 + + A L+ +Y K NL+ + N N+G Y +EV K ++ D F Sbjct: 576 EELHAKLE-EYLNNVK-SNLQCEDINYKNIGKEIYQLEVP--------KHIKVPDEFFIV 625 Query: 527 QTMSNLTRFTTLEL-------IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNA 579 + R+ TL L I+LE +I S + N ++E N Sbjct: 626 SATKSFNRYYTLNLKNLITDYIELEEKIFQCHGSLFFQAV-------NCLLESESLFFNI 678 Query: 580 SQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDC 639 ++ ID I+LAI C P+ N V+ +PI K ++ ND Sbjct: 679 ISDLSTIDCLISLAIFNHSIKGCLPVEFNKIE--VRGLGNPIY---------KEYVKND- 726 Query: 640 DLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSR 699 ++ +LTG NM GKSTF+R L I+ MG V AS + D+L+SR Sbjct: 727 ------YIEDQRILILTGSNMAGKSTFMRTFCLNTILFHMGCNVFASEFKCPVFDRLYSR 780 Query: 700 VGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLH 759 +G++DNL G STFMVE++ET++IL AT++S VI+DE+GRGT+T DG SIA A + YL Sbjct: 781 MGASDNLVRGESTFMVELLETSNILRNATSKSLVIMDELGRGTSTKDGKSIAKAVLSYLQ 840 Query: 760 ETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVG 819 N CR +TH+ L L+ F + + N +IFL+K++ GI + S GI V Sbjct: 841 NIN-CRVFFSTHYQNLVSLNNG---FSTGFMNICIKNNIVIFLYKLVNGICEDSNGIHVA 896 Query: 820 KLAGLPNTVISRA 832 KLAG+P ++ +A Sbjct: 897 KLAGVPEEILLQA 909 >gi|297741050|emb|CBI31781.3| unnamed protein product [Vitis vinifera] Length = 903 Score = 237 bits (604), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 227/908 (25%), Positives = 407/908 (44%), Gaps = 151/908 (16%) Query: 48 MGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAI 107 +G Y F +DA +A+R LGI H+ + +P N ++++L+ G ++ + Sbjct: 4 VGYRYRFFGEDAEIAARVLGIY-----AHVDHNFLTASIPTFRLNVHVRRLVSAGFKVGV 58 Query: 108 CEQIESPLEAKKRGNKSL--VRRNVVRLVTPGTLTEDQLLSPTD------SNYLMAVAR- 158 +Q E+ K G+ L R + L T TL + + + +NYL+ V Sbjct: 59 VKQTETA-AIKAHGSNKLGPFCRGLSALYTKATLEAAEEVGGGEEECGSYNNYLVCVVEK 117 Query: 159 -IRTE-----WAIAWIDISTGIFKISTSNHDRLISD-------------IMRIDPREIIF 199 I E D+ GI + S D + + I+ + P E++ Sbjct: 118 GISVENSKDCGVGGGFDVRIGIVAVEVSTGDVVHGEFNDNFMRAGLEAVILSMSPAELLL 177 Query: 200 -------SEKEL------------------------SHAEYKSLFETLGNVAVAQPNVFF 228 +EK L + AE SL+E L N Sbjct: 178 GYPLSKQTEKLLLAYAGPASNVRVERTSRDCFSDGGALAEVMSLYENLSE------NSRA 231 Query: 229 DHSISESRIAD--------------YYNITTVDTFGS--------FSQVEKTAAAAAISY 266 DH + + + + Y +V +GS + A A I + Sbjct: 232 DHQVDNTEVMEQENHCLAIEPPTTSYVKFVSVH-YGSGIALGIMSMPDLAVQALALTIRH 290 Query: 267 IKKTQMVNKPTIGY---PEREDIQSTLFIDSAARSNLEILRTLS-GSREQSLLKTIDYSI 322 +K+ + +G P +++ TL + A LE+L S GS SLL T+++++ Sbjct: 291 LKQFGLERILCMGASFRPFSSNMEMTL--SANALQQLEVLNNHSDGSESGSLLHTMNHTL 348 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G RL ++ PL DS I+ RLD+++ + + Q +S PD+ R L+R+ Sbjct: 349 TIFGSRLLRHWVSHPLCDSNMISARLDAVSEIVMSMGSCKASQNFGRS-PDIQRGLTRIF 407 Query: 383 IGRGEPKD-IAVIRDGIRSGINILNLFLK-NDLPEE----------LR---------GAV 421 + I+V + + +G + L ++ D+ E+ LR G + Sbjct: 408 HRTATASEFISVTQAILFAGKQLQRLHIEEKDVDEKGQSRSVRSVLLRKLILTASSSGII 467 Query: 422 EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLK 481 KL +L K + DLP + G + + RSL +K + L Sbjct: 468 GNAAKLLSTLNKEAAD--KGDLPNLF----IISSGQFPEVAKARSLVQSAKEKLDLLIGL 521 Query: 482 YAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELI 541 Y ++ ++ NL+ + + IE L D++ ++ + R+ E++ Sbjct: 522 YRKQLRMNNLEFMSVSGTTHLIE--------LPVDVKVPSNWVKVNSTKKTVRYHPPEVL 573 Query: 542 DLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNY 601 ++++ A ++ +++ A + A Q +A +D +LAIL++ +NY Sbjct: 574 SALDQLSLANEELMIACRGAWDSFLRAFDKYFSEFQAAVQALATLDCLHSLAILSRNKNY 633 Query: 602 CRPIIDNSTNFI---VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGP 658 RP+ + + + GRHP++E L+ F+ ND +L + ++TGP Sbjct: 634 VRPVFVGDSEPVQMHICSGRHPVLETVLQDN----FVPNDTNLHADGEYCE----IVTGP 685 Query: 659 NMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMI 718 NMGGKS ++RQ ALI IMAQ+GS+VPAS A + ++D + +R+GS+D++ GRSTF+ E+ Sbjct: 686 NMGGKSCYIRQVALIAIMAQVGSFVPASSAKLCVLDGIHTRMGSSDSIQQGRSTFLEELS 745 Query: 719 ETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDL 778 E + I++ T++S VI+DE+GRGT+T DG++IA+AT+ YL E RC L TH+ ++ + Sbjct: 746 EASHIIHNCTSRSLVIIDELGRGTSTHDGVAIAYATLHYLLEHKRCMVLFVTHYPKIRAM 805 Query: 779 SKSLKRFHNATLQVSDS----NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYD 834 + ++ +E + +L+K++PG+++ S+G +V +LA LP++ I RA Sbjct: 806 DMDTDTDKTDSKSDKNAQTMDHEDVTYLYKLVPGVSERSFGFKVAQLAQLPSSCIRRANV 865 Query: 835 ILKTFEKL 842 + E + Sbjct: 866 MAAELEAM 873 >gi|50286559|ref|XP_445708.1| hypothetical protein [Candida glabrata CBS 138] gi|74661424|sp|Q6FVN6|MSH3_CANGA RecName: Full=DNA mismatch repair protein MSH3; AltName: Full=MutS protein homolog 3 gi|49525014|emb|CAG58627.1| unnamed protein product [Candida glabrata] Length = 1025 Score = 237 bits (604), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 229/893 (25%), Positives = 412/893 (46%), Gaps = 141/893 (15%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITL---------TKRGKH 76 TP+ RQ ++K N D ++ R+G Y++F DA++AS L + L + Sbjct: 149 TPLDRQVKDLKLGNMDKVLVIRVGYKYKIFAQDAIIASTILHLQLIPGKVTIDDSNPNDS 208 Query: 77 LGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAK---KRGNKSLVRRNVVRL 133 K C P ++++L++ G ++A+ EQ E+ K + S+ R + Sbjct: 209 KYKQFAYCSFPDVRLKVHLERLVRSGLKVAVVEQSETATTKKFDNSKAKTSVFERKITGT 268 Query: 134 VTPGTLTEDQLLSPTDSNYLMAVARIRTEWAI------------AW-IDISTG-----IF 175 + T + N L I WA+ W I +S G F Sbjct: 269 YSKATYATNCEFEVNHENILGTNNSI---WALDIEVSDSIYKYYLWSIQLSNGEVIYDSF 325 Query: 176 KISTSNHDRLISDIMRIDPREII--------------FSEKELSHAEYKSLFETLGNVAV 221 + S N ++ + + ++P EI+ F + +L Y L E L N+ Sbjct: 326 EESKDNFSKVETRMKYLNPSEIVSPVVDSFPIKLKKRFLDLQLCQKNYDILAEDL-NIPK 384 Query: 222 AQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYP 281 + + +R+ + ++I Y+K+ IG Sbjct: 385 KE--------LLNNRLIELWHI-------------------LYRYLKEYSNEKLLNIGSN 417 Query: 282 EREDIQS-TLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTD 340 R Q ++ + + +NL+++ + + +L +D++ T G RL E + PL Sbjct: 418 YRHFSQKISIQLQAQTINNLDLIS--NDDSKGTLFWILDHTRTPFGKRLLKEWLLRPLLS 475 Query: 341 STKINTRLDSINFFIQ--NPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 I RL++I+ ++ N I + +++K PD+ R+++R+ G+ +++ + + Sbjct: 476 KDAIVDRLNAIDCILESANSIFFESLNQMMKGIPDLLRTINRVSFGKTSQREVYFLLKQL 535 Query: 399 RSGINILNLFLKNDLPEELR---GAVE-KLKKLP----QSLEKTLSSMLSDDL------P 444 I K+ + E+ GA++ K KL Q E +LSS++ L Sbjct: 536 TGVIKHFEAH-KDYIEVEINSNSGAIKTKSTKLASIMTQMFEFSLSSVIPQLLLMINVSA 594 Query: 445 TFKRD------GGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK-----IKNLKI 493 ++D G F + D S + + RD I S++ + +E + +K + Sbjct: 595 VMEKDQKKQLLGFFHLNNYDNSENIIKMQRD-----IDSVKAQLHDELQNIKKILKRPHL 649 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTT---LELIDLENRITNA 550 + + + + IEV ++ + D ++ ++RF T EL++L Sbjct: 650 AYKDEVDFLIEVRNTQVKGIPSD------WVKVNNTKMISRFLTPRTKELVEL----LEY 699 Query: 551 TNSALLIEL-ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNS 609 N L E+ + ++ N I + +A D ++LA ++ Y RP+ +S Sbjct: 700 QNDLLYNEISKEYDQFLNRIASYYNEVKTFIMNLAEYDCLLSLAAVSCNVGYTRPVFTDS 759 Query: 610 TN--FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 I K R+PI+E ++ ND ++ +K+SG++ ++TGPNMGGKS+++ Sbjct: 760 NEQLIIAKQARNPIIESL-----GVDYVPNDIEM----EKDSGRVLVITGPNMGGKSSYI 810 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ AL+VIMAQ+GSYVPA + + D + +R+GS DN+ G+STF VE+ ET I+N Sbjct: 811 RQIALMVIMAQIGSYVPAESLKLSVFDNVLTRIGSQDNILQGQSTFKVELSETVEIINSC 870 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLL-ATHFHELTDL-SKSLKRF 785 T+++ ++LDE+GRGT+T DG +IAWA I+Y E +C +L THF +T + S LK + Sbjct: 871 TSKTLLLLDEVGRGTSTRDGNAIAWALIKYFVEEEQCPFILFTTHFTIVTTVKSPLLKSY 930 Query: 786 HNATLQVSDSNEG---IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI 835 H +Q + NE ++FL+++ G+ D SYG+ V KLAG+ +I+RA+D+ Sbjct: 931 HMNYVQHKNENENWTTVVFLYQLKAGVTDSSYGLNVAKLAGIDTHIINRAHDV 983 >gi|310801343|gb|EFQ36236.1| MutS domain V [Glomerella graminicola M1.001] Length = 922 Score = 236 bits (603), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 242/911 (26%), Positives = 417/911 (45%), Gaps = 118/911 (12%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD----IPM 83 +R + + +++ D++ + GD+Y +DA +R + T T + LG+D +P Sbjct: 15 FIRFFKSLPAVHEDTVRIFDRGDWYTSHGEDANFIARTVYKT-TSVVRTLGRDDKTGLPS 73 Query: 84 CGVPVHTANHYIQK-LIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL--T 140 + V ++++ L K+G RI I E + + V + +PG L Sbjct: 74 VTMTVTVFRQFLREALFKLGKRIEIWESTGGRMNWQ-----------VAKQASPGNLQDV 122 Query: 141 EDQLLSPTDSNYLMAVARIRTEW------AIAWIDISTGIFKISTSNHDRLISD----IM 190 E+ L ++ ++ +I T+ + + D S +S + L S+ ++ Sbjct: 123 EEDLGGQIEAAPMILAVKISTKATEARSVGVCFADASVRELGVSEFLDNDLFSNFEALLI 182 Query: 191 RIDPREIIFS------EKELSHAEYKSLFETLGNVAVAQPNV--FFDHSISE--SRIADY 240 ++ RE + K+ A+ K + G VAV++ + F I + +R+ Sbjct: 183 QLGVRECLVQMDKADKNKDPDLAKLKQIITNCG-VAVSERSTSEFGTKDIEQDLARLLKD 241 Query: 241 YNITTVDTFGSFSQVE-KTAAAAAISYIKKTQMVNKPT-IGYPE--REDIQSTLFIDSAA 296 TT+ Q + K A +A + IK +++ P+ G + + D+ + +D+AA Sbjct: 242 ERATTL-----LPQTDLKLAMGSAAALIKYLGVLHDPSNFGQYQLYQHDLSQFMKLDAAA 296 Query: 297 RSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFI 355 L ++ G++ SL +++ T AG RL ++ + PL + +I R + F+ Sbjct: 297 LKALNLMPGARDGAKSMSLYGLLNHCKTPAGSRLLSQWLKQPLMNKEEIEKRQQLVEAFV 356 Query: 356 QNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIA-----VIR--------DGIRSG 401 + L +Q+ L+S PD+ R R + G+ +D+ VIR +G+ Sbjct: 357 NDTELRQTMQEEHLRSVPDLYRLAKRFQRGKANLEDVVRAYQVVIRLPGFLGTLEGVMDE 416 Query: 402 INILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASL 461 L + P LRG + L KL + +E T+ DL ++ D SL Sbjct: 417 AYRDPLDVAYTTP--LRGLSDSLAKLSEMVETTV------DLDALDNHEYIIKPEFDDSL 468 Query: 462 DETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVLKKDLE 518 R D+ KR I A + + K + ++++ GY + +T A ++ Sbjct: 469 RIIRKKLDKLKRDIDQEFSDAARDLRQEVGKKIFLENHKVHGYCMRLTRQEAGAIR---- 524 Query: 519 SKDRFIHRQTMSNLTRFTTLELIDLENRIT------NATNSALLIELESFEILSNAIIEQ 572 +K + T N FTT + L N T S+L+ E+ + ++E+ Sbjct: 525 NKSGYQECSTQKNGVYFTTKTMQSLRREFDQLSQNYNRTQSSLVSEVVGVAASYSPVLER 584 Query: 573 SESLDNASQVIAIIDISIALAILA--KEQNYCRPIID--NSTNFIVKDGRHPIVEKTLKQ 628 + V+A +D+ I+LA + Y RP I I+K+ RHP +E Sbjct: 585 ------LAGVLAHLDVIISLAHCSVHAPSEYVRPKIHKRGEGQTILKEARHPCLE----M 634 Query: 629 QSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYA 688 Q FI ND L+ DK+S ++TGPNMGGKST++RQ +I +MAQ+G +VP + A Sbjct: 635 QDDVQFITNDVALT--RDKSS--FLIITGPNMGGKSTYIRQIGVIALMAQIGCFVPCTEA 690 Query: 689 HIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGL 748 + I D + +RVG++D+ G STFM EM+ETA+IL AT +S +I+DE+GRGT+T DG Sbjct: 691 ELTIFDSILARVGASDSQLKGVSTFMAEMLETANILKSATAESLIIIDELGRGTSTYDGF 750 Query: 749 SIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG--------II 800 +AWA E++ + C + ATHFHELT L+ + HN + +G + Sbjct: 751 GLAWAISEHIVKEIGCFAMFATHFHELTALADEHPQVHNLHVTAHIGGDGGGKNSKREVT 810 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVI---SRAYDILKTFEKLYHHNQKDMRLYYPEI 857 L+KV G+ D S+GI V +L P+ V+ R D L+ F +D+ L Y + Sbjct: 811 LLYKVDDGVCDQSFGIHVAELVRFPDKVVRMAKRKADELEDFTS----KHEDLGLKYSKT 866 Query: 858 QTKESKNNLSK 868 +E L + Sbjct: 867 DMEEGSAMLKE 877 >gi|324501049|gb|ADY40473.1| DNA mismatch repair protein Msh6 [Ascaris suum] Length = 1219 Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 234/942 (24%), Positives = 415/942 (44%), Gaps = 145/942 (15%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 E LK TP RQ+ KS D+++ +++G FYE++ DA++ L +T RGK Sbjct: 256 EAFLKQQTPGHRQWWLAKSAYFDTMLLFKVGKFYEMYHMDAVIGVENLNLTYM-RGK--- 311 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGN-----KSLVRRNVVRL 133 I CG P + +L+ G+++A EQ E+P + ++R + +VRR + R+ Sbjct: 312 --IAHCGFPEVAYGRFADQLVNRGYKVARVEQTETPAQLEERNKLEKNREKVVRREICRV 369 Query: 134 VTPGTLTEDQL-----------LSPTDSNYLMAVARIRTE----WAIAWIDISTGIFKIS 178 + GT T L + PT + ++ + + +ID S G F ++ Sbjct: 370 TSAGTRTYGVLDTCDGESALDAVEPTARHLFAFAEKVMPNGLPTYGVCFIDTSVGRFYVA 429 Query: 179 TSNHD----------------RLISDIMRIDP--------------REIIFSEKELSHAE 208 D +++ + RI P +E + +KE AE Sbjct: 430 QFTDDANRSSMRTLFAHYQPSQILYERGRISPASQSLLNSSASAVIKEALIPKKEFPDAE 489 Query: 209 --YKSLFETL--GNVAVAQP----NVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 K L L G V + P N+ D + A +N ++++ Sbjct: 490 GTIKMLTNKLYFGEVVQSWPDTLRNLLADADALNPKCASEFNECMAALGAVLWYLKRSLI 549 Query: 261 AAAISYIKKTQMVNKPTIG---YPEREDIQS--------TLFIDSAARSNLEILRTLSG- 308 + ++ + P++ +R+ + S + +D + NL I+ L G Sbjct: 550 DVDMVTMRNFERYIPPSLSGNRMSQRDSVVSDETYWRGRRMVLDGISLYNLNIVPPLDGV 609 Query: 309 ---------SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP- 358 S + SL TI+ IT G R+ + + +P D+ + +R D+I + + + Sbjct: 610 KRSALRDSTSSKYSLYNTINKCITPFGKRMLRQWVCAPSCDADVLRSRQDAIQWLMNSSS 669 Query: 359 -ILINPIQKILKSSPDVPRSLSR-----LKIGRGE-PKDIAVIRDGIRSG-------INI 404 I + ++L+ PD+ R + + LK E P AV+ + +R ++ Sbjct: 670 KIFADKATELLRKMPDLERLVQKIHTLGLKYRASEHPDGRAVMFEPLRYNRRKIGDLLSA 729 Query: 405 LNLFLKND-LPEELRGAVEKLKKLPQSLEKTLSSM---LSDDLPTFK--------RDGGF 452 L+ F + D L + R ++ PQ +++ + +S+DL FK + G Sbjct: 730 LSGFERVDELAQFYREMFVGDEECPQLMDRCFGASFPDISNDLHHFKDAFDHDKAKQEGI 789 Query: 453 L--RDGADASLDET-RSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSS 509 + G DA D +R++ + + A L K ++ + ++ + Y +E+ + Sbjct: 790 IVPEKGIDAEYDGVMEDIRERMRDLEAYLH-KIRKQLGCERIQYMGSGRSRYQLEIPEAI 848 Query: 510 ASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAI 569 A L D E K + R TT E + L + A +I + + Sbjct: 849 AQNLSADFELK------SSRKGYRRMTTDESVRLFEELLEAETRRDVIRRDVMRRVFADF 902 Query: 570 IEQSESLDNASQVIAIIDISIALAILAKEQN--YCRP--IIDNSTNFI-VKDGRHPIVEK 624 ++ ++ +A+ D+ ++LA A CRP + D+ + + G HP + Sbjct: 903 DTRAAKWAAVTERVAVFDVLLSLARYANSSGLCMCRPEFVYDSEKPLLDIVAGYHPCLAA 962 Query: 625 TLKQQ----SSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 + ++ +I ND L N LLTGPNMGGKST +RQ A++V++AQ+G Sbjct: 963 KISAAKEGGANTNYIPNDTQLG----GNHPLTMLLTGPNMGGKSTLMRQVAVLVVLAQIG 1018 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S VPA+ + VD++F+R+G+ D +A+G+STF VE+ E IL A+ S V++DE+GR Sbjct: 1019 SLVPAAKMRLSPVDRIFTRIGANDRIAAGQSTFFVELSEANIILRDASVHSLVVMDELGR 1078 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK---SLKRFHNATLQVSDSN- 796 GT+T DG +IA+A + L E RCR +TH+H L + + ++K H A + V + N Sbjct: 1079 GTSTHDGTAIAYAVLRALAEKVRCRAFFSTHYHSLCNAVRDVPNIKAAHMACI-VDNENY 1137 Query: 797 -----EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAY 833 E + FL+ + G+ SYG K++G+ VI A+ Sbjct: 1138 SDPTLEHVTFLYSLTSGVCPKSYGFFAAKVSGIKPEVIRAAF 1179 >gi|294671153|ref|ZP_06736007.1| hypothetical protein NEIELOOT_02861 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307091|gb|EFE48334.1| hypothetical protein NEIELOOT_02861 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 495 Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 163/523 (31%), Positives = 257/523 (49%), Gaps = 46/523 (8%) Query: 48 MGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAI 107 MGDFYELFFDDA+ A++ L ITLT RG+ G+ I M GVP H A Y+ +L+K+G +AI Sbjct: 1 MGDFYELFFDDAVEAAKLLDITLTTRGQMDGEAIKMAGVPYHAAEQYLARLVKLGKSVAI 60 Query: 108 CEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAW 167 CEQ+ + +K V R VVR+VTPGTLT+ LL ++N + AV + IAW Sbjct: 61 CEQV-----GEVGASKGPVERKVVRIVTPGTLTDSALLEDKETNRIAAVCIRKKRLGIAW 115 Query: 168 IDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVF 227 + +G FK+ + DRL+ ++ R+ EI+ + KS N+ + Q NV Sbjct: 116 ASLQSGEFKVRMTTPDRLVDELARLQAAEILVPDD-------KSAL----NIGLPQANVT 164 Query: 228 ------FDHSISESRIADYYNITTVDTFGSFSQVEKT----AAAAAISYIKKTQMVNKPT 277 FD I Y+ + FG E AA A ++YIK TQ Sbjct: 165 RLHDWQFDADSGFDLITRYFGCQDLRGFG-LEMDEHAPAIGAAGALLNYIKLTQSQLPRH 223 Query: 278 IGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASP 337 + E Q + +D+A R NLEI +TL G + +L +D T G RL + P Sbjct: 224 LDGLSLESEQQYIGMDAATRRNLEITQTLGGKKSPTLFSVLDRCATHMGSRLLTLWLHHP 283 Query: 338 LTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG 397 L + + I R +++ N + I LK D+ R +R+ +G P+D++ +RD Sbjct: 284 LRNRSHIRARQQAVSALFGN---TDDITGRLKGIADIERIAARIAVGSARPRDLSGLRDS 340 Query: 398 IRSGINILNLFLKNDLPEELRGAVEKLKKLPQ--SLEKTLSSMLSDDLPTFKRDGGFLRD 455 + + I + L + L+G P+ ++ + L++ + + + RDGG + Sbjct: 341 LFALAQI--KLPSSPLLDTLQGI------FPEGVAVAERLAAAVLPEPSVWLRDGGVINH 392 Query: 456 GADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKK 515 G A LDE R +++ + +L+ + E T + LK++ N G++IE++ A Sbjct: 393 GFSAELDELRHIQNHGDEFLLALEARERERTGLSTLKVEFNRVHGFYIELSKVQAEQAPA 452 Query: 516 DLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 D + RQT+ N+ RF T EL E+++ A AL +E Sbjct: 453 D------YQRRQTLKNVERFITPELKVFEDKVLTAQEQALSLE 489 >gi|34330121|dbj|BAC82442.1| hypothetical protein [Gallus gallus] Length = 861 Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 172/609 (28%), Positives = 295/609 (48%), Gaps = 46/609 (7%) Query: 250 GSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPERE----DIQSTLFIDSAARSNLEILRT 305 + ++EK A +++S + K + + + E D+ + +D+AA L + ++ Sbjct: 184 AALPEMEKQVAVSSLSAVIKFLELLSDDSNFGQYELTTFDLSQYMVLDNAAVQALNLFQS 243 Query: 306 L--SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINP 363 + + QSL ++ T G RL + I PL D +I RL+ + F+ + L Sbjct: 244 SVENANNTQSLAGLLNKCRTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVVDTELRQG 303 Query: 364 IQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEE---LRG 419 +Q+ +L+ PD+ R + + +D + I N++ K++ + L G Sbjct: 304 LQEDLLRRFPDLNRLAKKFQRQAATLQDCYRMYQAINQLPNVVQALEKHEGAHQMLLLAG 363 Query: 420 AVEKLKKLPQSLEKTLSSMLSD-DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASL 478 + L + K L + + D+ + ++ D +L E R ++ + + +L Sbjct: 364 FITPLNDIHSDFSKFLEMIETTVDMDKVENHEFLVKASFDPNLTELREKMNELEESMQTL 423 Query: 479 QLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRF 535 A+E + K++K++ N+ G+ +T VL+ + +F T N +F Sbjct: 424 LKSAAKELGLEAGKSIKLESNSQFGHHFRITCKEEKVLRNN----TKFKITDTQKNGVKF 479 Query: 536 TTLELIDLENRITNATNSALLIELESFEILSNAIIEQ--------SESLDNASQVIAIID 587 T +L +A N + E +E +AI+++ +E + + VIA +D Sbjct: 480 TNSKL--------SAINEEYIKNREEYEEAQDAIVKEIINIASGYAEPIQTMNDVIAQLD 531 Query: 588 ISIALAILAKEQN--YCRPII--DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSC 643 ++ A ++ Y RP++ ++K RHP +E Q FI ND Sbjct: 532 AIVSFAHVSNGAPVPYVRPVVLEKGQGRIVLKGARHPCIEV----QDEVAFIPNDVTF-- 585 Query: 644 PNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSA 703 +K ++TGPNMGGKST++RQ +IV+MAQ+G +VP A I IVD + +RVG+ Sbjct: 586 --EKGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCDSAEITIVDCILARVGAG 643 Query: 704 DNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNR 763 D+ G STFM EM+ETASIL A+ S +I+DE+GRGT+T DG +AWA EY+ Sbjct: 644 DSQLKGVSTFMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEYIASKIC 703 Query: 764 CRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAG 823 + ATHFHELT L+ + +N + S++ + L++V G+ D S+GI V +LA Sbjct: 704 AFCMFATHFHELTALADQVPTVNNLHVTALTSDDTLTMLYRVKAGVCDQSFGIHVAELAA 763 Query: 824 LPNTVISRA 832 P VI A Sbjct: 764 FPKHVIESA 772 >gi|198473172|ref|XP_001356195.2| GA18039 [Drosophila pseudoobscura pseudoobscura] gi|198139335|gb|EAL33255.2| GA18039 [Drosophila pseudoobscura pseudoobscura] Length = 914 Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 179/611 (29%), Positives = 303/611 (49%), Gaps = 43/611 (7%) Query: 267 IKKTQMVNKP-TIGYPE--REDIQSTLFIDSAARSNLEILR------TLSGSREQSLLKT 317 IK +VN +G+ E + D++ + +DSAA L I+ ++ R QS+L Sbjct: 269 IKYLDLVNDAGNLGHYEIKQLDLKRFVHLDSAAVGALNIMPKPGTHPSMPSYRWQSILGV 328 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQ-KILKSSPDVPR 376 +D+ T G RL + + PL +N R + + +++ + + LK PD+ Sbjct: 329 LDHCRTPQGHRLMGKWVKQPLRSQEILNDRHNIVECLLESSDTLESLSLDYLKRIPDILM 388 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFL--KNDLPEEL-----RGAVEKLKKLPQ 429 +L + +D+ I I I+ + L +N E + + +E L L Q Sbjct: 389 LTKKLMRRKATLQDLFRIYQVILRTPKIVQVLLSLENSTVESVICSPFKSFLEDLTGLKQ 448 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 +E+ + D +R ++ D+ L E + ++ + L+ K +E + Sbjct: 449 MVEQVV------DFEAIERGEYLVKSSFDSRLMELQQTMNELYDKMERLKSKCNDELDLD 502 Query: 490 NLKIKHNN--NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 + +IK N LGY T SVL+K+ R + + RFT+ +L + Sbjct: 503 SKQIKLENVAKLGYHFRTTLKDDSVLRKN--KNYRIV--DVIKGGVRFTSDKLEGYADEF 558 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN--YCRP- 604 + + +L E + + + L + + +A +D ++ AI A+ Y RP Sbjct: 559 ASCHSRYEEQQLSIVEEIIQVAVGYAAPLTSLNNELAQLDCLVSFAIAARSAPTPYVRPN 618 Query: 605 -IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 + + + ++ D RHP +E L++ S FIAN S K+ ++++TGPNMGGK Sbjct: 619 MLAEGAGKLVLTDVRHPCLE--LQEHVS--FIAN----SVYFKKDKCNMFIITGPNMGGK 670 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 ST++R V+MA +G++VP A I +VD + RVG++DN+ G STFMVEMIET+ I Sbjct: 671 STYIRSVGTAVLMAHVGAFVPCGMATISMVDSILGRVGASDNIIKGLSTFMVEMIETSGI 730 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLK 783 + AT++S VI+DE+GRGT+T +G IAW+ E+L + +C L ATHFHE+T L+++L Sbjct: 731 IRTATDKSLVIIDELGRGTSTYEGCGIAWSIAEHLAKETKCFTLFATHFHEITKLAETLP 790 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY 843 N + + L++V PG+ + S+GIQV +LA P V+ A ++ FE + Sbjct: 791 TVKNCHMAALADADNFTLLYQVRPGVMEKSFGIQVARLANFPEDVVQNAQEVYNEFEDEH 850 Query: 844 --HHNQKDMRL 852 NQ+D L Sbjct: 851 ADKKNQEDKAL 861 >gi|49615724|gb|AAT67044.1| DNA mismatch repair protein [Petunia x hybrida] Length = 942 Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 227/843 (26%), Positives = 381/843 (45%), Gaps = 91/843 (10%) Query: 130 VVRLVTPGTLT--EDQLLSPT---DSNYLMAVARIRTE----WAIAWIDISTGIFKIST- 179 +V+ TPG L ED L + DS ++A+A ++ + ++DI+ I ++ Sbjct: 116 LVKNGTPGVLGSFEDILFANNEMQDSPVIVALAPNSSQNGCTIGLGYVDITKRILGLAEF 175 Query: 180 ---SNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESR 236 S+ L S ++ + RE + + +EY+ L++ + V ++E + Sbjct: 176 LDDSHFTNLESALVALGCRECLVPAETGKSSEYRPLYDAISRCGVM---------VTERK 226 Query: 237 IADYYNITTVDTFGSF------------SQVEKTAAAAAISYIKKTQMVNKPTIG--YPE 282 A++ V G S E A A + ++ G + Sbjct: 227 KAEFKGRDLVQDLGRLVKGSTEPVRDLVSGFECAAGALGCILSYAELLADESNYGNYIVK 286 Query: 283 REDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT-GAGGRLFAERIASPLTD 340 + ++ S + +DSAA L ++ + + + + SL ++ + T G G RL + PL D Sbjct: 287 QYNLSSYMRLDSAAMRALNVMESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLD 346 Query: 341 STKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG--- 397 KIN RLD + F+++ L +++ LK D+ R L+ R + + Sbjct: 347 VDKINCRLDLVQAFVEDAALRQDLRQHLKRIADIERLTRNLERKRASLVHVVKLYQSSIR 406 Query: 398 ---IRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSM-LSDDLPTFKRDGGFL 453 I+S + + + E+ +E L L K + + S DL + + Sbjct: 407 LPYIKSVLARYDGQFATLIREKYIDPLENLSD-DNHLNKFIGLVETSIDLDQLESGEYMI 465 Query: 454 RDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSA 510 D +L + ++ +R I +L + A + + K+LK+ G+ +T Sbjct: 466 SSAYDPNLSALKDEQETLERHIHNLHKQTANDLDLPVDKSLKLDKETTFGHVFRITKKEE 525 Query: 511 SVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAII 570 ++K L S +I +T + +FT +L L ++ + E + Sbjct: 526 PKIRKQLNS--HYIILETRKDGVKFTNTKLKKLGDQYQKIVEEYKSCQKELVARVVQTAA 583 Query: 571 EQSESLDNASQVIAIIDISIALAILAKE--QNYCRPIID--NSTNFIVKDGRHPIVEKTL 626 SE + + ++ +D+ ++LA LA Y RP I ++ + I++ RHP VE Sbjct: 584 SFSEVFEGIAGSLSELDVLLSLADLAASCPTPYTRPNITPPDTGDIILEGCRHPCVEA-- 641 Query: 627 KQQSSKPFIANDCDLSCPNDKNSGKLW--LLTGPNMGGKSTFLRQNALIVIMAQMGSYVP 684 Q FI NDC L G+ W ++TGPNMGGKST++RQ + ++MAQ+GS+VP Sbjct: 642 --QDWVNFIPNDCRLV------RGESWFQIITGPNMGGKSTYIRQVGVNILMAQVGSFVP 693 Query: 685 ASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTAT 744 + A I I D +F+RVG+ D G STFM EM+ETASIL AT++S +I+DE+GRGT+T Sbjct: 694 CNNASISIRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGRGTST 753 Query: 745 LDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS-----------LKRFHNATLQVS 793 DG +AWA E++ E + L ATHFHELT L+ + + FH + + Sbjct: 754 YDGFGLAWAICEHIVEVIKAPTLFATHFHELTALANANGDNGHKQIAGVANFH-VSAHID 812 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLY 853 S+ + L+KV PG D S+GI V + A P +V+ A + E + M L Sbjct: 813 ASSRKLTMLYKVQPGACDQSFGIHVAEFANFPRSVVDLAREKASELEDF---SPNAMILN 869 Query: 854 YPEIQTKESKNNLSKND--------KLFVEKIKCLNLDEMSPLTALKTLYAVKAWTLEKY 905 E + K N ND + F+E L LD+M AL+ L +K LE+ Sbjct: 870 DGEKAASKRKRNFDPNDVSRGSARARQFLEDFTNLPLDKMDQKQALQQLSKMKT-DLERD 928 Query: 906 STD 908 + D Sbjct: 929 AVD 931 >gi|297799442|ref|XP_002867605.1| hypothetical protein ARALYDRAFT_492273 [Arabidopsis lyrata subsp. lyrata] gi|297313441|gb|EFH43864.1| hypothetical protein ARALYDRAFT_492273 [Arabidopsis lyrata subsp. lyrata] Length = 1078 Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 232/936 (24%), Positives = 414/936 (44%), Gaps = 131/936 (13%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ +Q +E+K PD ++ +G Y F +DA +A+R LGI H+ Sbjct: 106 TPLEQQVVELKRKYPDVVLMVEVGYRYRFFGEDAEIAARVLGIY-----AHMDHSFMTAS 160 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKS-LVRRNVVRLVTPGTLTEDQL 144 VP N ++++L+ G++I + +Q E+ N+S R + L T TL + Sbjct: 161 VPTFRLNFHVRRLVNAGYKIGVVKQTETAAIKSHGANRSGPFFRGLSALYTKATLEAAED 220 Query: 145 LSP---------TDSNYLMAVA--RIRTEWAIAW-IDISTGIFKISTSNHDRLISD---- 188 +S SN+L+ V R+ TE I D+ G+ + S + + + Sbjct: 221 ISGGGGGEEGFGAQSNFLVCVVDERVNTETGIEMSFDVRVGVVGVEISTGEVVYGEFNDN 280 Query: 189 ---------IMRIDPREIIF----SEKE----LSHA--------EYKSLFETLGNVAVAQ 223 I+ P E++ S+K L+HA E SL + GN Sbjct: 281 FMRSGLEAVILSFSPAELLLGQPLSQKTEKFLLAHAGPTSNIRVERASL-DRFGNGNAVD 339 Query: 224 PNVFFDHSISESRIADYYNIT-----------TVDTFGSFSQVEKTAAAAAISYIKKTQM 272 + IS S + D I TV T + + A A ++K+ Sbjct: 340 EVISLCEKISASNLEDDKEIKVEAAEEGMSCLTVHTIMNMPHLTVQALALIFCHLKQFGF 399 Query: 273 VNKPTIGYPEREDIQSTLFIDSA-ARSNLEILRTLS-GSREQSLLKTIDYSITGAGGRLF 330 G R ST SA LE++R S GS SL +++++T G RL Sbjct: 400 ERILYQGASFRSLSSSTEMTLSANTLQQLEVVRNNSDGSESGSLFHNMNHTLTVYGSRLL 459 Query: 331 AERIASPLTDSTKINTRLDSINFF------------------------IQNP---ILINP 363 + PL + I+ RLD+++ I +P ++++ Sbjct: 460 RHWVTHPLCNRNLISARLDAVSEIAACMGSHSSSQNSDELVEDGSERTIVSPEFYLVLSS 519 Query: 364 IQKILKSSPDVPRSLSRLKIGRGEPKD-IAVIRDGIRSGINILNLFLKNDLP-EELRGAV 421 + L S D+ R ++R+ + + IAV+ + +G L +K D ++ A Sbjct: 520 VLTALSRSSDIQRGITRIFHRTAKATEFIAVMEAILLAGKQFKRLGIKQDCEMRSMQSAT 579 Query: 422 EKLKKLPQSLEKTLSSMLSDD----LPTFKRDGGFLRDGAD---ASLDETRSLRDQSKRI 474 + L + + S + D+ L ++G D D S D+ L + + + Sbjct: 580 VQSSLLKKLISVAASPAVVDNAAKLLSALNKEGAVRGDLLDILITSSDQFPELAEARQAV 639 Query: 475 IA------SLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQT 528 + SL + ++ I+NL+ + + + IE L D + ++ + Sbjct: 640 LVIKEKLDSLISSFRKKLAIRNLEFLQVSGITHLIE--------LPVDAKVPMNWVKVNS 691 Query: 529 MSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDI 588 R+ E++ + + AT ++ S++ + A Q +A +D Sbjct: 692 TKKTIRYHPPEIVAGLDELALATEHLAIVNRASWDSFLESFSRYYTDFQAAVQALAALDC 751 Query: 589 SIALAILAKEQNYCRPIIDNSTNFI---VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPN 645 +LA L+K + Y P+ + + ++ GRHP++E L+ F+ ND L Sbjct: 752 LHSLATLSKNKKYVCPVFVDDCEPVEINIQSGRHPVLETLLQDN----FVPNDTSLHAEG 807 Query: 646 DKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADN 705 + ++TGPNMGGKS ++RQ ALI IMAQ+GS+VPAS + ++D +F+R+G++D+ Sbjct: 808 EY----CQIITGPNMGGKSCYIRQVALISIMAQVGSFVPASSVKLHVLDGVFTRMGASDS 863 Query: 706 LASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCR 765 + GRSTF+ E+ E + I+ +++S VILDE+GRGT+T DG++IA+AT+++L RC Sbjct: 864 IQHGRSTFLEELSEASHIIRTCSSRSLVILDELGRGTSTHDGVAIAYATLQHLLLEKRCL 923 Query: 766 GLLATHFHELTDLSK----SLKRFHNATLQVSDSNEG-----IIFLHKVIPGIADHSYGI 816 L TH+ E+ ++S S+ +H + L G + +L+K++ G+ S+G Sbjct: 924 VLFVTHYPEIAEISNGFRGSVGTYHVSYLTSQKKKSGFDHDDVTYLYKLVRGLCSRSFGF 983 Query: 817 QVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 +V +LA +P++ I RA + E +++ R+ Sbjct: 984 KVAQLAQIPSSCIRRAISMGAKLEAEVGARERNTRM 1019 >gi|151945544|gb|EDN63785.1| MutS-like protein [Saccharomyces cerevisiae YJM789] Length = 964 Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 176/561 (31%), Positives = 277/561 (49%), Gaps = 66/561 (11%) Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPI-QKILKSS 371 SL + +++ T AG RL E + PLT+ +IN R D +++ I L + + L Sbjct: 337 SLFQLLNHCKTNAGVRLLNEWLKQPLTNIDEINKRHDLVDYLIDQIELRQMLTSEYLPMI 396 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRD---GIRSGINILNLFLKNDLPEE------------ 416 PD+ R +L RG +D+ I I + + FL++D P E Sbjct: 397 PDIRRLTKKLN-KRGNLEDVLKIYQFSKRIPEIVQVFTSFLEDDSPTEPVKELVRSVWLA 455 Query: 417 -LRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFL-RDGADASLDETRSLRDQSKRI 474 L VE L K + +E T+ DL ++ + F+ + + L + RS D + Sbjct: 456 PLSHHVEPLSKFEEMVETTV------DLDAYEENNEFMIKVEFNEELGKIRSKLDALRDE 509 Query: 475 IASLQLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSN 531 I S+ L AE+ K LK+++++ G+ + +T + A K+L ++I T+ Sbjct: 510 IHSIHLDSAEDLGFDPDKKLKLENHHLHGWCMRLTRNDA----KELRKHKKYIELSTVKA 565 Query: 532 LTRFTTLELIDLENRIT------NATNSALLIELESFEILSNAIIEQSESLDNASQVIAI 585 F+T +L + N + SAL+ E+ + + + E+ S V+A Sbjct: 566 GIFFSTKQLKSIANETNILQKEYDKQQSALVREIINITLTYTPVFEK------LSLVLAH 619 Query: 586 IDISIALAILAKEQN--YCRPII---DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCD 640 +D+ + A + Y RP + D+ + RHP++E Q FI+ND Sbjct: 620 LDVIASFAHTSSYAPIPYIRPKLHPMDSERRTHLISSRHPVLE----MQDDISFISNDVT 675 Query: 641 LSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRV 700 L + G ++TGPNMGGKST++RQ +I +MAQ+G +VP A I IVD + RV Sbjct: 676 L----ESGKGDFLIITGPNMGGKSTYIRQIGVISLMAQIGCFVPCEEAEIAIVDAILCRV 731 Query: 701 GSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHE 760 G+ D+ G STFMVE++ETASIL A+ S +I+DE+GRGT+T DG +AWA E++ Sbjct: 732 GAGDSQLKGVSTFMVEILETASILKNASKNSLIIVDELGRGTSTYDGFGLAWAIAEHIAS 791 Query: 761 TNRCRGLLATHFHELTDLSKSLKRFHNATL---------QVSDSNEGIIFLHKVIPGIAD 811 C L ATHFHELT+LS+ L N + + +E I L+KV PGI+D Sbjct: 792 KIGCFALFATHFHELTELSEKLPNIKNMHVVAHIEKNLKEQKHDDEDITLLYKVEPGISD 851 Query: 812 HSYGIQVGKLAGLPNTVISRA 832 S+GI V ++ P ++ A Sbjct: 852 QSFGIHVAEVVQFPEKIVKMA 872 >gi|6324482|ref|NP_014551.1| Msh2p [Saccharomyces cerevisiae S288c] gi|2506880|sp|P25847|MSH2_YEAST RecName: Full=DNA mismatch repair protein MSH2; AltName: Full=MutS protein homolog 2 gi|600468|emb|CAA58189.1| orf 00935 [Saccharomyces cerevisiae] gi|1419934|emb|CAA99102.1| MSH2 [Saccharomyces cerevisiae] gi|285814801|tpg|DAA10694.1| TPA: Msh2p [Saccharomyces cerevisiae S288c] Length = 964 Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 176/561 (31%), Positives = 277/561 (49%), Gaps = 66/561 (11%) Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPI-QKILKSS 371 SL + +++ T AG RL E + PLT+ +IN R D +++ I L + + L Sbjct: 337 SLFQLLNHCKTNAGVRLLNEWLKQPLTNIDEINKRHDLVDYLIDQIELRQMLTSEYLPMI 396 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRD---GIRSGINILNLFLKNDLPEE------------ 416 PD+ R +L RG +D+ I I + + FL++D P E Sbjct: 397 PDIRRLTKKLN-KRGNLEDVLKIYQFSKRIPEIVQVFTSFLEDDSPTEPVNELVRSVWLA 455 Query: 417 -LRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFL-RDGADASLDETRSLRDQSKRI 474 L VE L K + +E T+ DL ++ + F+ + + L + RS D + Sbjct: 456 PLSHHVEPLSKFEEMVETTV------DLDAYEENNEFMIKVEFNEELGKIRSKLDTLRDE 509 Query: 475 IASLQLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSN 531 I S+ L AE+ K LK+++++ G+ + +T + A K+L ++I T+ Sbjct: 510 IHSIHLDSAEDLGFDPDKKLKLENHHLHGWCMRLTRNDA----KELRKHKKYIELSTVKA 565 Query: 532 LTRFTTLELIDLENRIT------NATNSALLIELESFEILSNAIIEQSESLDNASQVIAI 585 F+T +L + N + SAL+ E+ + + + E+ S V+A Sbjct: 566 GIFFSTKQLKSIANETNILQKEYDKQQSALVREIINITLTYTPVFEK------LSLVLAH 619 Query: 586 IDISIALAILAKEQN--YCRPII---DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCD 640 +D+ + A + Y RP + D+ + RHP++E Q FI+ND Sbjct: 620 LDVIASFAHTSSYAPIPYIRPKLHPMDSERRTHLISSRHPVLE----MQDDISFISNDVT 675 Query: 641 LSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRV 700 L + G ++TGPNMGGKST++RQ +I +MAQ+G +VP A I IVD + RV Sbjct: 676 L----ESGKGDFLIITGPNMGGKSTYIRQVGVISLMAQIGCFVPCEEAEIAIVDAILCRV 731 Query: 701 GSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHE 760 G+ D+ G STFMVE++ETASIL A+ S +I+DE+GRGT+T DG +AWA E++ Sbjct: 732 GAGDSQLKGVSTFMVEILETASILKNASKNSLIIVDELGRGTSTYDGFGLAWAIAEHIAS 791 Query: 761 TNRCRGLLATHFHELTDLSKSLKRFHNATL---------QVSDSNEGIIFLHKVIPGIAD 811 C L ATHFHELT+LS+ L N + + +E I L+KV PGI+D Sbjct: 792 KIGCFALFATHFHELTELSEKLPNVKNMHVVAHIEKNLKEQKHDDEDITLLYKVEPGISD 851 Query: 812 HSYGIQVGKLAGLPNTVISRA 832 S+GI V ++ P ++ A Sbjct: 852 QSFGIHVAEVVQFPEKIVKMA 872 >gi|302801095|ref|XP_002982304.1| hypothetical protein SELMODRAFT_268576 [Selaginella moellendorffii] gi|300149896|gb|EFJ16549.1| hypothetical protein SELMODRAFT_268576 [Selaginella moellendorffii] Length = 936 Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 178/579 (30%), Positives = 275/579 (47%), Gaps = 57/579 (9%) Query: 292 IDSAARSNLEILRTLSGSREQSLLKTI--DYSITGAGGRLFAERIASPLTDSTKINTRLD 349 +D+AA L +L + + + S L + S G G RL + PL D +I R D Sbjct: 293 LDAAALRALHVLESKNDPNKNSTLFGLMNRTSTAGMGKRLLNRWLKQPLLDVDEIKHRHD 352 Query: 350 SINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFL 409 + F+++ L ++ LK PDV R +L+ R +D+ + +++ + Sbjct: 353 VVQMFVEDAELRESLKNCLKRVPDVERLTRKLERSRATLQDLVKLYQ-----VSVRLSVV 407 Query: 410 KNDLPE---ELRGAVEKLKKLPQSLEKTLSSMLSD---------DLPTFKRDGGFLRDGA 457 K+ L E A+E+ +P E TL+ L DL K + Sbjct: 408 KDALERYEGEFASAIEERYVVPLR-EWTLAEHLGRYDALIESAIDLDQIKNGEYIISASY 466 Query: 458 DASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVLK 514 D+SL ++ RD + I + A + + K+LK+ G+ +T ++ Sbjct: 467 DSSLKTIKADRDAVEEEIREAHEQAANDLDLPADKSLKLDKTTQWGHVFRITKKEEPKVR 526 Query: 515 KDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSE 574 K L + +I +T + +FTT +L L R N T + + + + L E Sbjct: 527 KKLAVQ--YITLETRKDGIKFTTSKLRRLSERYGNLTENYTNTQRDLVKRLVQVSQSYVE 584 Query: 575 SLDNASQVIAIIDISIALAILA--KEQNYCRPII--DNSTNFIVKDGRHPIVEKTLKQQS 630 + A+ ++A +D+ ++ A LA Y RPII N + I++ RHP VE Q Sbjct: 585 IFNGAANLLAELDVLLSFADLAVSSPTPYVRPIITGQNEGDIILEGSRHPCVEA----QD 640 Query: 631 SKPFIANDCDLSCPNDKNSGKLW--LLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYA 688 FI NDC L GK W ++TGPNMGGKST++RQ + ++MAQ+G +VP A Sbjct: 641 DVNFIPNDCRLI------RGKSWFQIITGPNMGGKSTYIRQIGVNILMAQVGCFVPCYRA 694 Query: 689 HIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGL 748 I I +F+RVG+ D G STFM EM+ET++IL AT S +I+DE+GRGT+T DG Sbjct: 695 EISIRSCIFARVGAGDCQLRGVSTFMAEMLETSAILKSATETSLIIVDELGRGTSTYDGF 754 Query: 749 SIAWATIEYLHETNRCRGLLATHFHELTDLSK---------------SLKRFHNATLQVS 793 +AWA EY+ + R L ATHFHELT +S + FH + + Sbjct: 755 GLAWAICEYIVDVTRAPTLFATHFHELTSISHRQGPSAHGPSKGPPVGISNFH-VSAHID 813 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 S+ + L+KV G D S+GI V + A P V++ A Sbjct: 814 PSSRKLTMLYKVEDGPCDQSFGIHVAEFARFPECVVALA 852 >gi|172002|gb|AAA34802.1| homologue of bacterial MutS protein [Saccharomyces cerevisiae] Length = 966 Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 176/561 (31%), Positives = 277/561 (49%), Gaps = 66/561 (11%) Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPI-QKILKSS 371 SL + +++ T AG RL E + PLT+ +IN R D +++ I L + + L Sbjct: 337 SLFQLLNHCKTNAGVRLLNEWLKQPLTNIDEINKRHDLVDYLIDQIELRQMLTSEYLPMI 396 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRD---GIRSGINILNLFLKNDLPEE------------ 416 PD+ R +L RG +D+ I I + + FL++D P E Sbjct: 397 PDIRRLTKKLN-KRGNLEDVLKIYQFSKRIPEIVQVFTSFLEDDSPTEPVNELVRSVWLA 455 Query: 417 -LRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFL-RDGADASLDETRSLRDQSKRI 474 L VE L K + +E T+ DL ++ + F+ + + L + RS D + Sbjct: 456 PLSHHVEPLSKFEEMVETTV------DLDAYEENNEFMIKVEFNEELGKIRSKLDTLRDE 509 Query: 475 IASLQLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSN 531 I S+ L AE+ K LK+++++ G+ + +T + A K+L ++I T+ Sbjct: 510 IHSIHLDSAEDLGFDPDKKLKLENHHLHGWCMRLTRNDA----KELRKHKKYIELSTVKA 565 Query: 532 LTRFTTLELIDLENRIT------NATNSALLIELESFEILSNAIIEQSESLDNASQVIAI 585 F+T +L + N + SAL+ E+ + + + E+ S V+A Sbjct: 566 GIFFSTKQLKSIANETNILQKEYDKQQSALVREIINITLTYTPVFEK------LSLVLAH 619 Query: 586 IDISIALAILAKEQN--YCRPII---DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCD 640 +D+ + A + Y RP + D+ + RHP++E Q FI+ND Sbjct: 620 LDVIASFAHTSSYAPIPYIRPKLHPMDSERRTHLISSRHPVLE----MQDDISFISNDVT 675 Query: 641 LSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRV 700 L + G ++TGPNMGGKST++RQ +I +MAQ+G +VP A I IVD + RV Sbjct: 676 L----ESGKGDFLIITGPNMGGKSTYIRQVGVISLMAQIGCFVPCEEAEIAIVDAILCRV 731 Query: 701 GSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHE 760 G+ D+ G STFMVE++ETASIL A+ S +I+DE+GRGT+T DG +AWA E++ Sbjct: 732 GAGDSQLKGVSTFMVEILETASILKNASKNSLIIVDELGRGTSTYDGFGLAWAIAEHIAS 791 Query: 761 TNRCRGLLATHFHELTDLSKSLKRFHNATL---------QVSDSNEGIIFLHKVIPGIAD 811 C L ATHFHELT+LS+ L N + + +E I L+KV PGI+D Sbjct: 792 KIGCFALFATHFHELTELSEKLPNVKNMHVVAHIEKNLKEQKHDDEDITLLYKVEPGISD 851 Query: 812 HSYGIQVGKLAGLPNTVISRA 832 S+GI V ++ P ++ A Sbjct: 852 QSFGIHVAEVVQFPEKIVKMA 872 >gi|190407259|gb|EDV10526.1| DNA mismatch repair protein MSH2 [Saccharomyces cerevisiae RM11-1a] gi|323335633|gb|EGA76916.1| Msh2p [Saccharomyces cerevisiae Vin13] Length = 964 Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 176/561 (31%), Positives = 277/561 (49%), Gaps = 66/561 (11%) Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPI-QKILKSS 371 SL + +++ T AG RL E + PLT+ +IN R D +++ I L + + L Sbjct: 337 SLFQLLNHCKTNAGVRLLNEWLKQPLTNIDEINKRHDLVDYLIDQIELRQMLTSEYLPMI 396 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRD---GIRSGINILNLFLKNDLPEE------------ 416 PD+ R +L RG +D+ I I + + FL++D P E Sbjct: 397 PDIRRLTKKLN-KRGNLEDVLKIYQFSKRIPEIVQVFTSFLEDDSPTEPVKELVRSVWLA 455 Query: 417 -LRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFL-RDGADASLDETRSLRDQSKRI 474 L VE L K + +E T+ DL ++ + F+ + + L + RS D + Sbjct: 456 PLSHHVEPLSKFEEMVETTV------DLDAYEENNEFMIKVEFNEELGKIRSKLDALRDE 509 Query: 475 IASLQLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSN 531 I S+ L AE+ K LK+++++ G+ + +T + A K+L ++I T+ Sbjct: 510 IHSIHLDSAEDLGFDPDKKLKLENHHLHGWCMRLTRNDA----KELRKHKKYIELSTVKA 565 Query: 532 LTRFTTLELIDLENRIT------NATNSALLIELESFEILSNAIIEQSESLDNASQVIAI 585 F+T +L + N + SAL+ E+ + + + E+ S V+A Sbjct: 566 GIFFSTKQLKSIANETNILQKEYDKQQSALVREIINITLTYTPVFEK------LSLVLAH 619 Query: 586 IDISIALAILAKEQN--YCRPII---DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCD 640 +D+ + A + Y RP + D+ + RHP++E Q FI+ND Sbjct: 620 LDVIASFAHTSSYAPIPYIRPKLHPMDSERRTHLISSRHPVLE----MQDDISFISNDVT 675 Query: 641 LSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRV 700 L + G ++TGPNMGGKST++RQ +I +MAQ+G +VP A I IVD + RV Sbjct: 676 L----ESGKGDFLIITGPNMGGKSTYIRQVGVISLMAQIGCFVPCEEAEIAIVDAILCRV 731 Query: 701 GSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHE 760 G+ D+ G STFMVE++ETASIL A+ S +I+DE+GRGT+T DG +AWA E++ Sbjct: 732 GAGDSQLKGVSTFMVEILETASILKNASKNSLIIVDELGRGTSTYDGFGLAWAIAEHIAS 791 Query: 761 TNRCRGLLATHFHELTDLSKSLKRFHNATL---------QVSDSNEGIIFLHKVIPGIAD 811 C L ATHFHELT+LS+ L N + + +E I L+KV PGI+D Sbjct: 792 KIGCFALFATHFHELTELSEKLPNVKNMHVVAHIEKNLKEQKHDDEDITLLYKVEPGISD 851 Query: 812 HSYGIQVGKLAGLPNTVISRA 832 S+GI V ++ P ++ A Sbjct: 852 QSFGIHVAEVVQFPEKIVKMA 872 >gi|259149396|emb|CAY86200.1| Msh2p [Saccharomyces cerevisiae EC1118] Length = 964 Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 176/561 (31%), Positives = 277/561 (49%), Gaps = 66/561 (11%) Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPI-QKILKSS 371 SL + +++ T AG RL E + PLT+ +IN R D +++ I L + + L Sbjct: 337 SLFQLLNHCKTNAGVRLLNEWLKQPLTNIDEINKRHDLVDYLIDQIELRQMLTSEYLPMI 396 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRD---GIRSGINILNLFLKNDLPEE------------ 416 PD+ R +L RG +D+ I I + + FL++D P E Sbjct: 397 PDIRRLTKKLN-KRGNLEDVLKIYQFSKRIPEIVQVFTSFLEDDSPTEPVKELVRSVWLA 455 Query: 417 -LRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFL-RDGADASLDETRSLRDQSKRI 474 L VE L K + +E T+ DL ++ + F+ + + L + RS D + Sbjct: 456 PLSHHVEPLSKFEEMVETTV------DLDAYEENNEFMIKVEFNEELGKIRSKLDALRDE 509 Query: 475 IASLQLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSN 531 I S+ L AE+ K LK+++++ G+ + +T + A K+L ++I T+ Sbjct: 510 IHSIHLDSAEDLGFDPDKKLKLENHHLHGWCMRLTRNDA----KELRKHKKYIELSTVKA 565 Query: 532 LTRFTTLELIDLENRIT------NATNSALLIELESFEILSNAIIEQSESLDNASQVIAI 585 F+T +L + N + SAL+ E+ + + + E+ S V+A Sbjct: 566 GIFFSTKQLKSIANETNILQKEYDKQQSALVREIINITLTYTPVFEK------ISLVLAH 619 Query: 586 IDISIALAILAKEQN--YCRPII---DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCD 640 +D+ + A + Y RP + D+ + RHP++E Q FI+ND Sbjct: 620 LDVIASFAHTSSYAPIPYIRPKLHPMDSERRTHLISSRHPVLE----MQDDISFISNDVT 675 Query: 641 LSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRV 700 L + G ++TGPNMGGKST++RQ +I +MAQ+G +VP A I IVD + RV Sbjct: 676 L----ESGKGDFLIITGPNMGGKSTYIRQVGVISLMAQIGCFVPCEEAEIAIVDAILCRV 731 Query: 701 GSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHE 760 G+ D+ G STFMVE++ETASIL A+ S +I+DE+GRGT+T DG +AWA E++ Sbjct: 732 GAGDSQLKGVSTFMVEILETASILKNASKNSLIIVDELGRGTSTYDGFGLAWAIAEHIAS 791 Query: 761 TNRCRGLLATHFHELTDLSKSLKRFHNATL---------QVSDSNEGIIFLHKVIPGIAD 811 C L ATHFHELT+LS+ L N + + +E I L+KV PGI+D Sbjct: 792 KIGCFALFATHFHELTELSEKLPNVKNMHVVAHIEKNLKEQKHDDEDITLLYKVEPGISD 851 Query: 812 HSYGIQVGKLAGLPNTVISRA 832 S+GI V ++ P ++ A Sbjct: 852 QSFGIHVAEVVQFPEKIVKMA 872 >gi|302661996|ref|XP_003022658.1| hypothetical protein TRV_03218 [Trichophyton verrucosum HKI 0517] gi|291186616|gb|EFE42040.1| hypothetical protein TRV_03218 [Trichophyton verrucosum HKI 0517] Length = 1117 Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 230/892 (25%), Positives = 402/892 (45%), Gaps = 142/892 (15%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPM RQ +EIK+ + D+++ ++G Y+ F+D + HL + Sbjct: 233 TPMERQIMEIKNKHLDAVLLIQVGYKYQ-FYDPS--------------EAHLTR-FASAS 276 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 VP+H + ++++L+ G+++ + +Q+E + L+A + R + + T T ED Sbjct: 277 VPIHRLHVHVKRLVAAGYKVGVVKQLETAALKAAGDNRNAPFVRKLTNMYTKATYIEDDA 336 Query: 145 -------LSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI--STSN--HDRLISDIMRID 193 L P+ + YL+ + + + GI + +T N +D MR Sbjct: 337 ELELSGALEPS-TGYLLCLTESGAKGQGDGEKVQIGIVAVQPATGNVIYDSFEDGFMR-- 393 Query: 194 PREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS 253 EI E L H +A + + D S + +++ + + + TFG Sbjct: 394 -SEI---ETRLLH------------IAPCELLLIGDLSAATNKLVQHLSKGRMTTFGDSV 437 Query: 254 QVE-----KTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTL------------------ 290 ++E KTAAA A S+I G PE + + L Sbjct: 438 RIERREQSKTAAAEAHSHISSFYAGKMAATGSPEDANASNLLDQVLKLPDDVTICLSAMI 497 Query: 291 -----------------FIDSAARS----------NLEILRTLSG-SREQSLLKTIDYSI 322 F +ARS NLEI + + S + SL +++ + Sbjct: 498 KHLTEYGLEHVFDLTKYFQSFSARSHMLLNGNTLTNLEIYQNQTDYSSKGSLFWSMNRTR 557 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFI---QNPILINPIQKILKSSPDVPRSLS 379 T G RL + PL D K+ R +++ + ++ + N + + D+ ++L Sbjct: 558 TKFGQRLLRRWVGRPLLDKVKLEERTEAVTELLDSDKSTLTYNLGATLSQVRVDLEKALI 617 Query: 380 RLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAV--EKLKKLPQSLEKTLSS 437 R+ G+ ++ + ++S I + +K+ + + E + LP + +S Sbjct: 618 RVYYGKCSRPELLTMLKSMQS-IAVSFAHVKSPADSGFKSPILSESIAILPTMHDDVVSY 676 Query: 438 MLSDDLPTFKRDGG---FLRDGADASLDETR--------SLRDQSKRIIASLQLKYAEET 486 + + K+D F + E R L+D K I +L K + Sbjct: 677 LNKINETAAKKDDKYDFFRESEESEEIGEHRLMIGTIEYELKDHLKSIAETLGKKKVQYV 736 Query: 487 KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDL-EN 545 + + Y +EV +S ++ K + + R I ++RF T E++ + Sbjct: 737 SVAGID--------YLVEVENSQGAL--KKVPASWRKI--SGTKKVSRFHTPEVVKMMRE 784 Query: 546 RITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPI 605 R + A + ++LS+ I + + + Q +A ID +L+++A + Y +P Sbjct: 785 RDQQKESLAAACDAAFLKLLSD-ISTKYQLFRDCIQALATIDALHSLSVIAAQPGYVKPT 843 Query: 606 IDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKST 665 + T + GRHP+VEK L ++ ND LS + + L+TGPNMGGKS+ Sbjct: 844 YTDDTIINISQGRHPMVEKVLIDS----YVPNDTQLST----DETRALLVTGPNMGGKSS 895 Query: 666 FLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILN 725 ++RQ ALI IM Q+GSYVPA A +G++D +++R+G+ DN+ +G STFMVE+ ETA IL Sbjct: 896 YVRQIALICIMGQIGSYVPAESATLGMLDAVYTRMGAFDNMLAGESTFMVELSETADILK 955 Query: 726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS---- 781 QAT +S VILDE+GRGT+T DG++IA A ++Y+ R L TH+ L+ L+ + Sbjct: 956 QATPRSLVILDELGRGTSTHDGVAIAQAVLDYMVRNLRSLTLFITHYQNLSRLASAFPGG 1015 Query: 782 -LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 L+ H + D + I FL+++ G+A SYG+ V KLA +P ++ A Sbjct: 1016 ELRNVHMKFTESGDHGQDITFLYEIGEGVAHRSYGLNVAKLANIPAGILEVA 1067 >gi|323352314|gb|EGA84849.1| Msh2p [Saccharomyces cerevisiae VL3] Length = 964 Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 176/561 (31%), Positives = 277/561 (49%), Gaps = 66/561 (11%) Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPI-QKILKSS 371 SL + +++ T AG RL E + PLT+ +IN R D +++ I L + + L Sbjct: 337 SLFQLLNHCKTNAGVRLLNEWLKQPLTNIDEINKRHDLVDYLIDQIELRQMLTSEYLPMI 396 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRD---GIRSGINILNLFLKNDLPEE------------ 416 PD+ R +L RG +D+ I I + + FL++D P E Sbjct: 397 PDIRRLTKKLN-KRGNLEDVLKIYQFSKRIPEIVQVFTSFLEDDSPTEPVKELVRSVWLA 455 Query: 417 -LRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFL-RDGADASLDETRSLRDQSKRI 474 L VE L K + +E T+ DL ++ + F+ + + L + RS D + Sbjct: 456 PLSHHVEPLSKFEEMVETTV------DLDAYEENNEFMIKVEFNEELGKIRSKLDALRDE 509 Query: 475 IASLQLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSN 531 I S+ L AE+ K LK+++++ G+ + +T + A K+L ++I T+ Sbjct: 510 IHSIHLDSAEDLGFDPDKKLKLENHHLHGWCMRLTRNDA----KELRKHKKYIELSTVKA 565 Query: 532 LTRFTTLELIDLENRIT------NATNSALLIELESFEILSNAIIEQSESLDNASQVIAI 585 F+T +L + N + SAL+ E+ + + + E+ S V+A Sbjct: 566 GIFFSTKQLKSIANETNILQKEYDKQQSALVREIINITLTYTPVFEK------LSLVLAH 619 Query: 586 IDISIALAILAKEQN--YCRPII---DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCD 640 +D+ + A + Y RP + D+ + RHP++E Q FI+ND Sbjct: 620 LDVIASFAHTSSYAPIPYIRPKLHPMDSERRTHLISSRHPVLE----MQDDISFISNDVT 675 Query: 641 LSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRV 700 L + G ++TGPNMGGKST++RQ +I +MAQ+G +VP A I IVD + RV Sbjct: 676 L----ESGKGDFLIITGPNMGGKSTYIRQVGVISLMAQIGCFVPCEEAEIAIVDAILCRV 731 Query: 701 GSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHE 760 G+ D+ G STFMVE++ETASIL A+ S +I+DE+GRGT+T DG +AWA E++ Sbjct: 732 GAGDSQLKGVSTFMVEILETASILKNASKNSLIIVDELGRGTSTYDGFGLAWAIAEHIAS 791 Query: 761 TNRCRGLLATHFHELTDLSKSLKRFHNATL---------QVSDSNEGIIFLHKVIPGIAD 811 C L ATHFHELT+LS+ L N + + +E I L+KV PGI+D Sbjct: 792 KIGCFALFATHFHELTELSEKLPNVKNMHVVAHIEKNLKEQKHDDEDITLLYKVEPGISD 851 Query: 812 HSYGIQVGKLAGLPNTVISRA 832 S+GI V ++ P ++ A Sbjct: 852 QSFGIHVAEVVQFPEKIVKMA 872 >gi|256271408|gb|EEU06469.1| Msh2p [Saccharomyces cerevisiae JAY291] Length = 964 Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 176/565 (31%), Positives = 279/565 (49%), Gaps = 74/565 (13%) Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS- 371 SL + +++ T AG RL E + PLT+ +IN R D +++ I ++++L S Sbjct: 337 SLFQLLNHCKTNAGVRLLNEWLKQPLTNIDEINKRHDLVDYLIDQI----EVRQMLTSEY 392 Query: 372 ----PDVPRSLSRLKIGRGEPKDIAVIRD---GIRSGINILNLFLKNDLPEE-------- 416 PD+ R +L RG +D+ I I + + FL++D P E Sbjct: 393 LPMIPDIRRLTKKLN-KRGNLEDVLKIYQFSKRIPEIVQVFTSFLEDDSPTEPVKELVRS 451 Query: 417 -----LRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFL-RDGADASLDETRSLRDQ 470 L VE L K + +E T+ DL ++ + F+ + + L + RS D Sbjct: 452 VWLAPLSHHVEPLSKFEEMVETTV------DLDAYEENNEFMIKVEFNEELGKIRSKLDA 505 Query: 471 SKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQ 527 + I S+ L AE+ K LK+++++ G+ + +T + A K+L ++I Sbjct: 506 LRDEIHSIHLDSAEDLGFDPDKKLKLENHHLHGWCMRLTRNDA----KELRKHKKYIELS 561 Query: 528 TMSNLTRFTTLELIDLENRIT------NATNSALLIELESFEILSNAIIEQSESLDNASQ 581 T+ F+T +L + N + SAL+ E+ + + + E+ S Sbjct: 562 TVKAGIFFSTKQLKSIANETNILQKEYDKQQSALVREIINITLTYTPVFEK------LSL 615 Query: 582 VIAIIDISIALAILAKEQN--YCRPII---DNSTNFIVKDGRHPIVEKTLKQQSSKPFIA 636 V+A +D+ + A + Y RP + D+ + RHP++E Q FI+ Sbjct: 616 VLAHLDVIASFAHTSSYAPIPYIRPKLHPMDSERRTHLISSRHPVLE----MQDDISFIS 671 Query: 637 NDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKL 696 ND L + G ++TGPNMGGKST++RQ +I +MAQ+G +VP A I IVD + Sbjct: 672 NDVTL----ESGKGDFLIITGPNMGGKSTYIRQIGVISLMAQIGCFVPCEEAEIAIVDAI 727 Query: 697 FSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIE 756 RVG+ D+ G STFMVE++ETASIL A+ S +I+DE+GRGT+T DG +AWA E Sbjct: 728 LCRVGAGDSQLKGVSTFMVEILETASILKNASKNSLIIVDELGRGTSTYDGFGLAWAIAE 787 Query: 757 YLHETNRCRGLLATHFHELTDLSKSLKRFHNATL---------QVSDSNEGIIFLHKVIP 807 ++ C L ATHFHELT+LS+ L N + + +E I L+KV P Sbjct: 788 HIASKIGCFALFATHFHELTELSEKLPNIKNMHVVAHIEKNLKEQKHDDEDITLLYKVEP 847 Query: 808 GIADHSYGIQVGKLAGLPNTVISRA 832 GI+D S+GI V ++ P ++ A Sbjct: 848 GISDQSFGIHVAEVVQFPEKIVKMA 872 >gi|327262719|ref|XP_003216171.1| PREDICTED: DNA mismatch repair protein Msh2-like [Anolis carolinensis] Length = 953 Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 185/598 (30%), Positives = 293/598 (48%), Gaps = 37/598 (6%) Query: 254 QVEKTAAAAAISYIKKTQMVNKPT-IGYPERE--DIQSTLFIDSAARSNLEILRTLSGSR 310 QV ++ AAAI Y+ +++N + G E D+ + +D AA L + SG+ Sbjct: 281 QVAISSLAAAIKYL---ELLNDDSNFGQFELSTFDLNQYMTLDHAAARALNLFPGSSGNT 337 Query: 311 E--QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK-I 367 + QSL ++ T G RL + I PL D KI RL+ + F+++ L +Q+ I Sbjct: 338 QSTQSLSGLLNKCKTPQGQRLVNQWIKQPLMDKNKIEERLNLVEAFVEDAELRQSLQEDI 397 Query: 368 LKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEEL---RGAVEKL 424 L+ PD R + + + +D I + N++++ K D ++ + L Sbjct: 398 LRRFPDFSRIAKKFQ-KKATLQDCYKIYQSVNQIPNVIHVLGKTDGNHDMLLEAVFIRPL 456 Query: 425 KKLPQSLEKTLSSMLSD--DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 K+L M+ + D+ T + ++ D +L R + D+ + + Sbjct: 457 KELHSDF-SNFQMMIEETLDMNTVENHEYLVKPSIDPNLAGIRKVMDKLEEKMRGALKTA 515 Query: 483 AEETKI---KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLE 539 A E + K++K++ N G+ +T VL+ +L+ K +T N +F+ + Sbjct: 516 ASELSLEAGKSIKLECNAQYGHHFRITYREEKVLRNNLKYK----VLETQKNGVKFSNIA 571 Query: 540 LIDL-ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIID--ISIALAILA 596 L DL E I N + ++ EI+ N E + + VIA +D +S A A A Sbjct: 572 LKDLNEEYIKNRKEYEEMQDVVVKEII-NVASGYKEPIQRLNDVIAQLDAVVSFAQASNA 630 Query: 597 KEQNYCRPII--DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWL 654 Y RP I ++K RHP +E Q FI ND +K + Sbjct: 631 APMPYVRPTILEKGEGGIVLKAARHPCIE----VQDDVSFIPNDVTF----EKGKQMFHI 682 Query: 655 LTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFM 714 +TGPNMGGKST++RQ +IV+MAQ+G +VP A I IVD + +RVG+ D+ G STFM Sbjct: 683 ITGPNMGGKSTYIRQAGVIVLMAQIGCFVPCDSADITIVDCILARVGAGDSQLKGVSTFM 742 Query: 715 VEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHE 774 EM+ET+SIL AT S +I+DE+GRGT+T DG +AWA EY+ + ATHFHE Sbjct: 743 AEMLETSSILRTATENSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHE 802 Query: 775 LTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 LT L + + +N + +++ + L++V G+ D S+GI V +LA P VI A Sbjct: 803 LTALDEEIPTVNNLHVTALTTDDTLTMLYRVKKGVCDQSFGIHVAELAAFPKHVIENA 860 >gi|164655966|ref|XP_001729111.1| hypothetical protein MGL_3578 [Malassezia globosa CBS 7966] gi|159103001|gb|EDP41897.1| hypothetical protein MGL_3578 [Malassezia globosa CBS 7966] Length = 947 Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 234/865 (27%), Positives = 405/865 (46%), Gaps = 108/865 (12%) Query: 40 PDSLVFYRMGDFYELFFDDALLASRCLGIT---LTKRGKHLGKDI--PMCGVPVHTANHY 94 P ++ + DFY + DDAL + + T L G +DI P C + + A + Sbjct: 35 PGTVRLFNRQDFYAAYGDDALYVADTVFKTKSVLRYLGGKSREDIGLPSCSLSLTAAKSF 94 Query: 95 IQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRN---VVRLVTPGTLTE--DQLLSPTD 149 ++ + +Q+ + A G+ S R + + + +PG L E D L +D Sbjct: 95 LRDALTT-------KQLRVEIWASTSGDGSGKRGSTWAIAKQASPGNLQELEDLLFLQSD 147 Query: 150 --SNYLMAVARIRTEWAI-----AWIDISTGIFKISTSNHDRLISD----IMRIDPREII 198 S+ ++ RI+ E + A+ D + F I+ L S+ I+++ +E + Sbjct: 148 VVSSPIVLALRIKVEDGLNQVGAAFADATNREFGIAEYAETDLFSNSESLIIQLGVKECV 207 Query: 199 FSEKELSHAEY-----KSLFETLGNVAV-AQPNVFFDHSISES--RIADYYNITTVDTFG 250 E + ++Y +S+ E G V + +F + S+ E R+ T+ T Sbjct: 208 LPTDE-AGSDYNLQKLRSMIERCGCVITEVRRGLFVNKSVEEDILRLLPSSQQATL-TSN 265 Query: 251 SFSQVEKTAAAAAISYIK---KTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLS 307 ++ T+A+A ISY+ K T+ D+ L +D+AA L + Sbjct: 266 LNKKLAMTSASALISYLNLLGDESNFGKFTLC---SHDLSEYLRMDNAALRALNLFPDPH 322 Query: 308 G-----SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILIN 362 G ++ SL +++ T G R+ + + PL + I R ++ + +P + Sbjct: 323 GQASGTNKGASLFGLLNHCKTAQGIRMLNQWLKQPLVNLHAIQNRQSMLSILLDDPEARH 382 Query: 363 PIQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGA- 420 +Q LK PD+ L+IG+ + +A + D +R ++ + DL + LR Sbjct: 383 RLQDDFLKYMPDM------LRIGKRFQRGVATLEDVVRCYQAVIKI---PDLTQVLRSIA 433 Query: 421 --------------VEKLKKLPQSLEKTLSSM-LSDDLPTFKRDGGFLRDGADASLDETR 465 V L +L Q L K + + ++ DL + ++ D +L R Sbjct: 434 IVSEADCALFHSTFVAPLDELYQHLVKLVEMVEMTLDLDELQYHNYVIKPEFDETLRLIR 493 Query: 466 S----LRDQ--SKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLES 519 + +RDQ + I L+ E K L ++++++ GY VT + A V+K + Sbjct: 494 TKLDVIRDQLDEQHIQVGHDLRLDTE---KKLHLENHSSYGYCFRVTRTDAGVVK----N 546 Query: 520 KDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNA 579 ++ ++ T+ FTT + +L + + + + + + + + L++ Sbjct: 547 RNGYLDLSTVKGGLYFTTPSVRELNDEFRSLSEDYASTQSRLVKDVIDIASSYTPPLEHL 606 Query: 580 SQVIAIIDISIALAILAKEQN--YCRP-IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIA 636 + V+A +D+ ++LA ++ Y RP + + ++ +++D RHP +E Q FI Sbjct: 607 NVVVAHLDVIVSLAHVSSNAPIPYTRPELRERGSSLVLRDSRHPCLEV----QDDIHFIP 662 Query: 637 NDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASY-AHIGIVDK 695 ND + PN+ + ++TGPNMGGKST+LRQ +I +MAQ+G +VPA+ A I I D Sbjct: 663 NDVSM-VPNES---EFLVVTGPNMGGKSTYLRQIGVITLMAQIGCFVPAAAGAQIPICDC 718 Query: 696 LFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATI 755 + +RVG+ D+ G STFM EM+ETA+IL AT S V++DE+GRGT+T DG +AWA Sbjct: 719 ILARVGAGDSQLRGISTFMAEMLETATILKSATRDSLVLIDELGRGTSTYDGFGLAWAIS 778 Query: 756 EYLHETNRCRGLLATHFHELTDLSKSLKRFHN--ATLQVSDSNEG------IIFLHKVIP 807 EY+ C+ + ATHFHE+T L++ L N V+ G I L+KV P Sbjct: 779 EYMVTQIHCKCVFATHFHEMTSLARKLPGVENLHVVAHVTPRENGSQFDKDITLLYKVEP 838 Query: 808 GIADHSYGIQVGKLAGLPNTVISRA 832 G +D SYGIQ+ +LA P VI A Sbjct: 839 GSSDQSYGIQIAELADFPEDVIRLA 863 >gi|226289518|gb|EEH45022.1| DNA mismatch repair protein Msh3 [Paracoccidioides brasiliensis Pb18] Length = 1157 Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 235/894 (26%), Positives = 411/894 (45%), Gaps = 118/894 (13%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK---------- 75 TPM RQ IEIK + D+++ +G + F +DA +A++ L I GK Sbjct: 243 TPMERQIIEIKKKHMDTVLVVEVGYKFRFFGEDARVAAKELSIVCIP-GKFRFDEHPSEA 301 Query: 76 HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLV 134 HL + +PVH + ++++L+ G+++ + Q+E + L+A + R + L Sbjct: 302 HLTR-FASASIPVHRLHVHVKRLVAAGYKVGVVRQLETAALKAAGDNRNAPFVRKLTNLY 360 Query: 135 TPGTLTED--QLLSP--------TDSNYLMAVARIRTEWAIAWID---ISTGIFKISTSN 181 T GT +D L P T + Y++ + A W + + GI + + Sbjct: 361 TKGTYIDDVEDLEGPRCNSSSVSTSTGYMLCMTESN---AKGWGNDEKVHVGIVAVQPAT 417 Query: 182 HDRLISD-------------IMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFF 228 D + D ++ I P E I E+S A K + G ++ N+F Sbjct: 418 GDVIYDDFEDGFMRSEIETRLLHIAPCEFIIV-GEMSKATEKLVRHLSG----SKTNIFG 472 Query: 229 D----HSIS---------ESRIADYYNITTVDTFGSFSQVEKT---------------AA 260 D S+S S +A +Y + + G+ V T Sbjct: 473 DKMRVESVSRLKNAAVESHSHVASFY-ASRMKARGTDGDVTATHLLEKVLRLPEDVTICL 531 Query: 261 AAAISYIKKTQMVNKPTI-GYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTI 318 ++ I Y+ + + + + Y + +S + ++ +NLEI + + + + SL T+ Sbjct: 532 SSMIIYMSQYGLEHVFDLTKYFQPFSARSHMLLNGNTLTNLEIYQNQTDHTSKGSLFWTL 591 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKIL----KSSPDV 374 D + T G RL + + PL + +++ R+ +I +Q+ P +++ K D+ Sbjct: 592 DRTKTKFGQRLLRKWVGRPLLNKSELEERIAAIEE-LQDTARTVPTERLKSLLSKVKADL 650 Query: 375 PRSLSRLKIGRG-EPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 +SL R+ GR P+ + V++ + ++ DL + LP E Sbjct: 651 EKSLIRIYYGRCTRPELLTVLQTMLLISDEFFHIKSPADLGFSSSAINAVIAALPAIRED 710 Query: 434 TLSSMLSDDLPTFKRDG--GFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI--- 488 ++ + + K+D F R+ + +L IA ++ + E + Sbjct: 711 IVTYLNKINAHAAKQDDKYNFFRESEETEEILESNLG------IADVEHRLKEHCAVAAE 764 Query: 489 ----KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLE 544 K ++ + Y IEV +S ++ K + + R I ++RF T E++ Sbjct: 765 ILGKKKVQYATVAGIEYLIEVENSPYNL--KKVPASWRKI--SGTKKVSRFHTPEVVQY- 819 Query: 545 NRITNATNSALLIELE-SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCR 603 R + AL + +F L I ++ + + Q +A +D ++LA +A + Y + Sbjct: 820 IRERDQFKEALAAACDKAFHALLADISKKYQEFRDCIQALAKLDCLLSLANIASQPGYVK 879 Query: 604 PIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGK 663 P + T ++ GRHP+VE+ L F+ ND +L N + L+TGPNMGGK Sbjct: 880 PTYTDKTCISIQRGRHPMVEQLLLDS----FVPNDIELQT----NETRALLVTGPNMGGK 931 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 S+++RQ ALI IM Q+GSYVPA A +G++D +++R+G+ DN+ +G STFMVE+ ETA I Sbjct: 932 SSYVRQVALITIMGQIGSYVPADSATLGMLDAVYTRMGAFDNMLAGESTFMVELSETADI 991 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLS---- 779 L QAT +S VILDE+GRGT+T DG++IA A ++Y+ R L TH+ L+ + Sbjct: 992 LRQATPRSLVILDELGRGTSTHDGVAIAHAVLDYMVRDLRSLTLFITHYQSLSSQALNFP 1051 Query: 780 -KSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 L+ H ++ I FL+ V G A SYG+ V +LA +P++V+ A Sbjct: 1052 EGELRNVHMKFMESGVDGRDITFLYVVGEGEAHRSYGLNVARLANVPSSVLDVA 1105 >gi|255541826|ref|XP_002511977.1| DNA mismatch repair protein MSH2, putative [Ricinus communis] gi|223549157|gb|EEF50646.1| DNA mismatch repair protein MSH2, putative [Ricinus communis] Length = 936 Score = 234 bits (596), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 186/592 (31%), Positives = 290/592 (48%), Gaps = 73/592 (12%) Query: 285 DIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT-GAGGRLFAERIASPLTDST 342 ++ S + +DSAA L +L + + + + SL ++ + T G G RL + PL D Sbjct: 285 NLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVN 344 Query: 343 KINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGI 402 +IN+RLD + F+++ L +++ LK D+ R + L+ R G++ Sbjct: 345 EINSRLDLVQAFVEDTALRQDLRQHLKRISDIERLVHNLEKRRA----------GLQ--- 391 Query: 403 NILNLFLKNDLPEELRGAVEKLKKLPQSLEKT-----LSSMLSDD-LPTF---------- 446 +I+ L+ + +RGA++K SL K L S+ DD L F Sbjct: 392 HIVKLYQSSIRLPYIRGALDKYDGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDL 451 Query: 447 -KRDGG--FLRDGADASL----DETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHN 496 + D G + D +L DE SL Q I +L + A++ + K LK+ Sbjct: 452 DQLDNGEYLISPSYDPALSALKDEQESLECQ----IHNLHKQTAQDLDLPQDKGLKLDKG 507 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 G+ +T ++K L ++ FI +T + +FT +L L ++ Sbjct: 508 TQFGHVFRITKKEEPKIRKKLTTQ--FIVLETRKDGVKFTNTKLKKLGDQYQKIVEEYKN 565 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKE--QNYCRPIIDNS--TNF 612 + E + SE + + +++ +D+ ++ A LA Y RP I S N Sbjct: 566 CQKELVNRVVQTAATFSEVFKSLAGLLSQLDVLLSFADLATSCPTPYTRPDITPSDVGNI 625 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLW--LLTGPNMGGKSTFLRQN 670 I++ RHP VE Q FI NDC L G+ W ++TGPNMGGKSTF+RQ Sbjct: 626 ILEGSRHPCVEA----QDWVNFIPNDCKLI------RGESWFQIITGPNMGGKSTFIRQV 675 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 + ++MAQ+GS+VP A I + D +F+RVG+ D G STFM EM+ETASIL AT++ Sbjct: 676 GVNILMAQVGSFVPCDKASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDK 735 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH---- 786 S +I+DE+GRGT+T DG +AWA E+L + + L ATHFHELT L+ H Sbjct: 736 SLIIIDELGRGTSTYDGFGLAWAICEHLVQVIKAPTLFATHFHELTGLADEKAEPHMKQI 795 Query: 787 ------NATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 + + + SN + L+KV PG D S+GI V + A P +V++ A Sbjct: 796 AGVANYHVSAHIDSSNRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVALA 847 >gi|326914905|ref|XP_003203763.1| PREDICTED: DNA mismatch repair protein Msh6-like [Meleagris gallopavo] Length = 1289 Score = 234 bits (596), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 187/607 (30%), Positives = 299/607 (49%), Gaps = 69/607 (11%) Query: 290 LFIDSAARSNLEILRT-LSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRL 348 + +D NLE+L+ +G+ E +LL+ ID T G RL + + +PL + T IN RL Sbjct: 662 MVLDGVTLMNLEVLQNGTNGTTEGTLLERIDSCCTPFGKRLLKQWLCAPLCNPTSINDRL 721 Query: 349 DSINFFIQNPILINPIQKILKSSPDVPRSLSRL-KIG-----RGEPKDIAVIRDGIR--- 399 D++ + P + I + LK PD+ R LS++ IG + P A+ + I+ Sbjct: 722 DAVEDLLAVPAKLTEISEHLKKLPDLERLLSKIHSIGSPLKSQNHPDSRAIFYEEIKYSK 781 Query: 400 ----------SGINILNLFLKNDLPEE---------LRGAVEKLKKLPQSLEKTLSSMLS 440 G ++N + D EE L+ V + K P LS+ L Sbjct: 782 KKIADFLSALEGFKVMNEIV--DAMEEVASDFKSQVLKQLVTRKAKHPDGRFPDLSAELK 839 Query: 441 DDLPTF----KRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHN 496 F R G + A D ++L+D K + + ++ K+ +K Sbjct: 840 RWDTAFDHNQARKTGVITPKAGFDSDYDKALQD-IKTVEEDFRAYLDKQRKLLGVKSVLY 898 Query: 497 NNLG---YFIEVTSSSASV-LKKDLESKD-RFIHRQTMSNLTRFTTLELIDLENRITNAT 551 G Y +E+ ++ S L ++ E K R +++ + ELI+ E R A Sbjct: 899 WGTGKNRYQMEIPETAISRNLPEEYELKSTRKGYKRYWTKEIEKMLAELINAEERRDAAL 958 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN--YCRPII--- 606 + +F+ + S+ A Q IA++D+ ++LA +++ + CRP+I Sbjct: 959 KDCMRRLFYNFD-------KNSQDWQTAVQCIAVLDVLMSLANYSQDGDGPLCRPVILLP 1011 Query: 607 -DNSTNFI-VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGK---LWLLTGPNMG 661 D++ + +K+ RHP + KT FI ND + D++ G L+TGPNMG Sbjct: 1012 VDSAPPVLELKNARHPCITKTF---FGDDFIPNDIVIG-SKDEDGGSEASCVLVTGPNMG 1067 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKST +RQ L+VIMAQ+G YVPA + +D++F+R+G++D + SG STF VE+ ET+ Sbjct: 1068 GKSTLMRQAGLLVIMAQLGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETS 1127 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTD---L 778 SIL AT S V++DE+GRGTAT DG +IA A + L E +CR L +TH+H L + Sbjct: 1128 SILQHATEHSLVLVDELGRGTATFDGTAIASAVVRELAENIKCRTLFSTHYHSLVEDYSG 1187 Query: 779 SKSLKRFHNATLQVSD----SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYD 834 S +++ H A + ++ S E I FL+K I G SYG +LA +P VI + + Sbjct: 1188 SAAVRLGHMACMVENESEDPSQETITFLYKFIEGACPKSYGFNAARLADIPEEVIQKGHR 1247 Query: 835 ILKTFEK 841 + FE+ Sbjct: 1248 KAREFEE 1254 Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 97/207 (46%), Gaps = 26/207 (12%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 E+ L TP MR++ ++KS N D+++ Y++G FYEL+ DA++ LG+ K Sbjct: 331 EDYLNKCTPGMRRWWQLKSQNFDAVICYKVGKFYELYHMDAVIGVNELGLIFMK------ 384 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESP--LEAKKRGNK------SLVRRNV 130 G P + L++ G++IA EQ E+P +EA+ + +VRR + Sbjct: 385 GSWAHSGFPETAFGRFSAILVQKGYKIARVEQTETPEMMEARCKATAHPTRFDKVVRREI 444 Query: 131 VRLVTPGTLTE---DQLLSPTDSNYLMAVARIRTE-----WAIAWIDISTGIFKISTSNH 182 R++T GT T D S + YL+ V + + ++D S G F + + Sbjct: 445 CRILTKGTQTYSIIDCDPSENHNKYLLCVKEKEDSSGQRVYGVCFVDTSVGKFYVGQFSD 504 Query: 183 DRLISD----IMRIDPREIIFSEKELS 205 DR S + P +++F + L+ Sbjct: 505 DRHCSRFRTLVAHYTPVQVLFEKGNLT 531 >gi|207341422|gb|EDZ69483.1| YOL090Wp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 872 Score = 234 bits (596), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 175/558 (31%), Positives = 276/558 (49%), Gaps = 66/558 (11%) Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPI-QKILKSS 371 SL + +++ T AG RL E + PLT+ +IN R D +++ I L + + L Sbjct: 337 SLFQLLNHCKTNAGVRLLNEWLKQPLTNIDEINKRHDLVDYLIDQIELRQMLTSEYLPMI 396 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRD---GIRSGINILNLFLKNDLPEE------------ 416 PD+ R +L RG +D+ I I + + FL++D P E Sbjct: 397 PDIRRLTKKLN-KRGNLEDVLKIYQFSKRIPEIVQVFTSFLEDDSPTEPVKELVRSVWLA 455 Query: 417 -LRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFL-RDGADASLDETRSLRDQSKRI 474 L VE L K + +E T+ DL ++ + F+ + + L + RS D + Sbjct: 456 PLSHHVEPLSKFEEMVETTV------DLDAYEENNEFMIKVEFNEELGKIRSKLDALRDE 509 Query: 475 IASLQLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSN 531 I S+ L AE+ K LK+++++ G+ + +T + A K+L ++I T+ Sbjct: 510 IHSIHLDSAEDLGFDPDKKLKLENHHLHGWCMRLTRNDA----KELRKHKKYIELSTVKA 565 Query: 532 LTRFTTLELIDLENRIT------NATNSALLIELESFEILSNAIIEQSESLDNASQVIAI 585 F+T +L + N + SAL+ E+ + + + E+ S V+A Sbjct: 566 GIFFSTKQLKSIANETNILQKEYDKQQSALVREIINITLTYTPVFEK------LSLVLAH 619 Query: 586 IDISIALAILAKEQN--YCRPII---DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCD 640 +D+ + A + Y RP + D+ + RHP++E Q FI+ND Sbjct: 620 LDVIASFAHTSSYAPIPYIRPKLHPMDSERRTHLISSRHPVLE----MQDDISFISNDVT 675 Query: 641 LSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRV 700 L + G ++TGPNMGGKST++RQ +I +MAQ+G +VP A I IVD + RV Sbjct: 676 L----ESGKGDFLIITGPNMGGKSTYIRQVGVISLMAQIGCFVPCEEAEIAIVDAILCRV 731 Query: 701 GSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHE 760 G+ D+ G STFMVE++ETASIL A+ S +I+DE+GRGT+T DG +AWA E++ Sbjct: 732 GAGDSQLKGVSTFMVEILETASILKNASKNSLIIVDELGRGTSTYDGFGLAWAIAEHIAS 791 Query: 761 TNRCRGLLATHFHELTDLSKSLKRFHNATL---------QVSDSNEGIIFLHKVIPGIAD 811 C L ATHFHELT+LS+ L N + + +E I L+KV PGI+D Sbjct: 792 KIGCFALFATHFHELTELSEKLPNVKNMHVVAHIEKNLKEQKHDDEDITLLYKVEPGISD 851 Query: 812 HSYGIQVGKLAGLPNTVI 829 S+GI V ++ P ++ Sbjct: 852 QSFGIHVAEVVQFPEKIV 869 >gi|326914909|ref|XP_003203765.1| PREDICTED: DNA mismatch repair protein Msh2-like [Meleagris gallopavo] Length = 873 Score = 233 bits (595), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 182/643 (28%), Positives = 309/643 (48%), Gaps = 56/643 (8%) Query: 285 DIQSTLFIDSAARSNLEILRTL--SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDST 342 D+ + +D+AA L + ++ + + QSL ++ T G RL + I PL D Sbjct: 235 DLSQYMVLDNAAVQALNLFQSSVENANNTQSLAGLLNKCRTPQGQRLVNQWIKQPLMDKN 294 Query: 343 KINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSG 401 +I RL+ + F+++ L +Q+ +L+ PD+ R R + +D + I Sbjct: 295 RIEERLNLVEAFVEDTELRQGLQEDLLRRFPDLNRLAKRFQRQAATLQDCYRMYQAINQL 354 Query: 402 INILNLFLKNDLPEE---LRGAVEKLKKLPQSLEKTLSSMLSD-DLPTFKRDGGFLRDGA 457 N++ K++ + L + L + K L + + D+ + ++ Sbjct: 355 PNVVQALEKHEGAHQMLLLAVFITPLNDIHSDFSKFLEMIETTLDMDKVENHEFLVKASF 414 Query: 458 DASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVLK 514 D +L E R ++ + + +L A+E + K++K++ N+ G+ +T VL+ Sbjct: 415 DPNLTELREKMNELEENMQTLLKSAAKELGLEAGKSIKLESNSQFGHHFRITCKEEKVLR 474 Query: 515 KDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQ-- 572 + ++ T N +FT +L +A N + E +E +AI+++ Sbjct: 475 NN----SKYKITDTQKNGVKFTNSKL--------SAINEDYIKNREEYEEAQDAIVKEII 522 Query: 573 ------SESLDNASQVIAIIDISIALAILAKEQN--YCRPII--DNSTNFIVKDGRHPIV 622 +E + + VIA +D ++ A ++ Y RP++ ++K RHP + Sbjct: 523 NIASGYAEPIQTMNDVIAQLDAIVSFAHVSNGAPVPYVRPVVLEKGQGRIVLKGARHPCI 582 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 E Q FI ND +K ++TGPNMGGKST++RQ +IV+MAQ+G + Sbjct: 583 EV----QDEVAFIPNDVTF----EKGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCF 634 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VP A I IVD + +RVG+ D+ G STFM EM+ETASIL A+ S +I+DE+GRGT Sbjct: 635 VPCDSAEITIVDCILARVGAGDSQLKGVSTFMAEMLETASILRTASENSLIIIDELGRGT 694 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFL 802 +T DG +AWA EY+ + ATHFHELT L+ + +N + S++ + L Sbjct: 695 STYDGFGLAWAISEYIASKICAFCMFATHFHELTALADQVPTVNNLHVTALTSDDTLTML 754 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI---LKTFEKLYHHNQKDMRLYYPEIQT 859 ++V G+ D S+GI V +LA P VI A + L+ F+ L + + E Sbjct: 755 YRVKAGVCDQSFGIHVAELAAFPKHVIENAREKALELEEFQDLGRPKESE-----GEPAA 809 Query: 860 KESKNNLSKNDKL---FVEKIKCLNLDEMSP---LTALKTLYA 896 K+ + +K+ F+ ++K L L +MS T LK L A Sbjct: 810 KKCYREREEGEKIIQDFLCQVKALPLTDMSEEDIKTKLKQLRA 852 >gi|71835971|gb|AAZ42361.1| DNA mismatch repair protein MSH2 [Physcomitrella patens] Length = 951 Score = 233 bits (595), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 192/654 (29%), Positives = 313/654 (47%), Gaps = 65/654 (9%) Query: 292 IDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT-GAGGRLFAERIASPLTDSTKINTRLD 349 +D+AA L + + + S + SL ++ + T G G RL + PL D +I RLD Sbjct: 300 LDAAALRALNVTESKTDSNKHLSLFGLMNRTCTQGMGKRLLNRWLKQPLVDVVEITKRLD 359 Query: 350 SINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG------IRSGIN 403 ++ F+++ L ++ L+ PD+ R +S+L+ + +D+ + IR+ + Sbjct: 360 TVQAFVEDLELRQDLRSHLRRMPDIERLVSKLEKRKAGLQDVVRLYQASLRLPLIRTCLE 419 Query: 404 ILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGG----FLRDGADA 459 + DL E+ GA + P L K ++ + + G F R + Sbjct: 420 KYDGEFSKDLQEKY-GAHLDVWTQPNHLGK-FDGLVEAAVDLEQLQNGEYIYFSRLCQQS 477 Query: 460 SLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVLKKD 516 S + + R +R I + + A++ + K+LK+ + G+ +T ++K Sbjct: 478 SRAQNWARR--CERQILKVHQQSADDLGLPAEKSLKLDKSTQYGHVFRITKKEEPKVRKK 535 Query: 517 LESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESL 576 L S+ +I +T + +FT +L L + T T + E + + E Sbjct: 536 LNSQ--YITLETRKDGIKFTNAKLRRLSEQYTKLTEEYSSAQRELVAKVVDVAATFVEIF 593 Query: 577 DNASQVIAIIDISIALAILAKEQN--YCRPIIDNS--TNFIVKDGRHPIVEKTLKQQSSK 632 + ++A +D+ ++ A LA Y RP I ++ + I++ RHP VE Q Sbjct: 594 SGVAVLLADMDVLLSFADLASCSPVPYVRPSITSADEGDIILEGSRHPCVEA----QDDV 649 Query: 633 PFIANDCDLSCPNDKNSGKLW--LLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHI 690 FI+NDC L GK W ++TGPNMGGKSTF+RQ + V+MAQ+G +VP A I Sbjct: 650 NFISNDCRLV------RGKSWFQIITGPNMGGKSTFIRQVGVNVLMAQVGCFVPCDRAEI 703 Query: 691 GIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSI 750 + D +F+RVG+ D G STFM EM+ETASI+ AT +S +I+DE+GRGT+T DG + Sbjct: 704 SVRDCIFARVGAGDCQLRGVSTFMAEMLETASIIKSATERSLIIIDELGRGTSTYDGFGL 763 Query: 751 AWATIEYLHETNRCRGLLATHFHELTDLSKS---------------LKRFHNATLQVSDS 795 AWA EYL E R L ATHFHELT L S + +H + + Sbjct: 764 AWAICEYLVEVTRAPTLFATHFHELTALEHSNSPPVHGPPRGPLVGIANYH-VSAHIDTK 822 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR--LY 853 ++ + L+KV G D S+GI V + A P +V+ A E + KD+ L Sbjct: 823 SQKLAMLYKVEEGPCDQSFGIHVAEFAHFPESVVELAKQKAAELED-FSDTGKDVSGGLS 881 Query: 854 YPEIQTKESKNNLSKNDKL--------FVEKIKCLNLDEMSPLTALKTLYAVKA 899 E+ TK + + +DK+ F++++ L +D+MS L A+K+ Sbjct: 882 KDEVGTKRKRVS-GPDDKVLGAGRVRRFLQEMAALPVDKMSREETYAKLKALKS 934 >gi|322697506|gb|EFY89285.1| DNA mismatch repair protein MSH2 [Metarhizium acridum CQMa 102] Length = 922 Score = 233 bits (595), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 240/896 (26%), Positives = 401/896 (44%), Gaps = 110/896 (12%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGIT---LTKRGK 75 E L +R Y + + D++ + GD+Y D+A ++ + T L + G+ Sbjct: 6 ELKLDDEGGFIRFYKSLPDVGEDTIRIFDRGDWYTAHGDNASFIAKTVYKTTSVLRQLGR 65 Query: 76 HLGKDIPMCGVPVHTANHYIQK-LIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLV 134 + +P + V ++++ L K+G RI I E + K V+ Sbjct: 66 NDHTGLPSVTMTVTVFRQFLREALFKLGKRIEIWESPSGRMNWK-----------CVKQA 114 Query: 135 TPGTLT--EDQLLSPTDSNYLMAVARIRTEWA------IAWIDISTGIFKISTSNHDRLI 186 +PG L ED L +S ++ +I + + + + D S +S + L Sbjct: 115 SPGNLQDIEDDLGGQIESAPMIIAVKISAKASEARIVGVCFADASVRELGVSEFLDNDLY 174 Query: 187 SD----IMRIDPREIIFS------EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESR 236 S+ ++++ RE + +K+ A+ + + + G +P F E Sbjct: 175 SNFESLLIQLGVRECVIQLDKGDKDKDPELAKLRQIIDNCGVAIAERPAGDFGTRDIEQD 234 Query: 237 IADYYNITTVDTFGSFSQVE-KTAAAAAISYIKKTQMVNKPT-IG--YPEREDIQSTLFI 292 +A + + Q + K A +A S IK ++ P+ G + + D+ + + Sbjct: 235 LARL--LKDDKSVNLLPQTDLKLAMGSAASLIKYLGVLQDPSNFGQYHLYQHDLAQFMKL 292 Query: 293 DSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSI 351 D+AA L ++ GS+ S+ +++ T G RL A+ + PL D +I R + Sbjct: 293 DAAALKALNLMPGPRDGSKTMSIYGVLNHCKTPVGSRLLAQWLKQPLMDKDEIEKRQQLV 352 Query: 352 NFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIA-----VIRDGIRSGINIL 405 F + L +Q+ L+S PD+ R R + G+ +D+ VIR + I Sbjct: 353 EAFFTDTELRQTMQEEHLRSVPDLYRLSKRFQRGKANLEDVVRAYQVVIR--LPGFIGTF 410 Query: 406 NLFLKNDLPEELRGA-VEKLKKLPQSLEKTLSSMLSD--DLPTFKRDGGFLRDGADASLD 462 + + L A KL++L +L K L M+ DL R ++ D L Sbjct: 411 EGVMDEAYRDPLDAAYTTKLRELSDNLGK-LQDMVEQTVDLDALDRHEYIIKSEYDQGLQ 469 Query: 463 ETRSLRDQSKRII------ASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKD 516 R DQ R I A+ L + KI L+ H + G + +T A ++ Sbjct: 470 TIRKKLDQLDRDIRAEFHEAARDLGQEADKKI-FLETSHKVH-GVCMRLTRQEAGCIR-- 525 Query: 517 LESKDRFIHRQTMSNLTRFTTLEL------IDLENRITNATNSALLIELESFEILSNAII 570 +K + T N FTT ++ D ++ N T S+L+ N ++ Sbjct: 526 --NKSSYQECSTQKNGVYFTTKKMQSYRREYDQLSQNYNRTQSSLV----------NEVV 573 Query: 571 EQSES----LDNASQVIAIIDISIALAILA--KEQNYCRPII----DNSTNFIVKDGRHP 620 + S L+ + V+A +D+ ++LA + + Y RP I + T I RHP Sbjct: 574 HVASSYCPVLERLAGVLAHLDVIVSLAHCSVHAPEAYVRPKIHTRGEGQTRLI--GARHP 631 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +E Q FI ND + + DK+S ++TGPNMGGKST++RQ +I +MAQ+G Sbjct: 632 CME----LQDDVQFITNDLEFT--RDKSS--FLIITGPNMGGKSTYIRQAGVIALMAQVG 683 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 +VP + A + I D + +RVG++D+ G STFM EM+ETA+IL AT +S +I+DE+GR Sbjct: 684 CFVPCAEAELTIFDSILARVGASDSQLKGVSTFMAEMLETANILKSATKESLIIIDELGR 743 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG-- 798 GT+T DG +AWA E++ + C + ATHFHELT L+ + N + S G Sbjct: 744 GTSTYDGFGLAWAISEHIVKEIGCFAMFATHFHELTALADQYPQVRNLHVTAHISGTGKD 803 Query: 799 -----IIFLHKVIPGIADHSYGIQVGKLAGLPNTVI---SRAYDILKTFEKLYHHN 846 + L+KV PGI D S+GI V +L P+ V+ R D L+ F + N Sbjct: 804 NNKREVTLLYKVEPGICDQSFGIHVAELVRFPDKVVRMAKRKADELEDFTTKHEDN 859 >gi|145610825|ref|XP_368365.2| DNA mismatch repair protein msh-2 [Magnaporthe oryzae 70-15] gi|145018176|gb|EDK02455.1| DNA mismatch repair protein msh-2 [Magnaporthe oryzae 70-15] Length = 924 Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 239/947 (25%), Positives = 423/947 (44%), Gaps = 118/947 (12%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLG-----ITLTKRGKHLGKDIP 82 +R + + + + D++ + GD+Y +DA L +R + + R H G + Sbjct: 15 FIRFFKSLPAAHKDTIRIFFRGDYYTAHGEDANLIARTVYKSTSVVRQLGRSDHTG--LS 72 Query: 83 MCGVPVHTANHYIQ-KLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL-- 139 + + +++ L K+G R+ I E + K V + +PG L Sbjct: 73 SVTLSITVFKQFLRDALYKLGKRVEIYESANGRMNWK-----------VTKQASPGNLQD 121 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWA------IAWIDISTGIFKISTSNHDRLISD----I 189 ED+L TDS ++ +I ++ + + + D S +S + L S+ + Sbjct: 122 VEDEL-GQTDSAPMILAVKISSKASEARNVGVCFADASVRELGVSEFLDNDLFSNFEALL 180 Query: 190 MRIDPREIIFS---EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTV 246 +++ +E + ++L + L + + N VA +SE +AD+ Sbjct: 181 IQLGVKECLIQYDKAEDLKDPDLAKLKQIIDNCGVA---------MSERPMADFGTRDIE 231 Query: 247 DTFGSFSQVEKTAA-----------AAAISYIKKTQMVNKPT-IGYPE--REDIQSTLFI 292 + E++A+ AA + IK ++ P+ G + + D+ + + Sbjct: 232 QDLARLLKDERSASLLPQTDLKLAMGAASALIKYLNVLQDPSNFGQYQLFQHDLSQFMKL 291 Query: 293 DSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSI 351 D+AA L + GS+ SL +++ T G RL A+ + PL +I R + Sbjct: 292 DAAALKALNLTPGARDGSKTMSLYGLLNHCKTPVGSRLLAQWLKQPLMSKDEIEGRQQLV 351 Query: 352 NFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIA-----VIRDGIRSGINIL 405 F+ + L +Q+ L+S PD+ R R + + +D+ VIR + I L Sbjct: 352 EAFMNDTELRQTMQEEHLRSIPDLYRLAKRFQRKKANLEDVVRAYQVVIR--LPGFIGTL 409 Query: 406 NLFLKNDLPEELRGA-VEKLKKLPQSLEKTLSSMLSD--DLPTFKRDGGFLRDGADASLD 462 + + L A KL++L SL + L M+ DL + ++ D D Sbjct: 410 EGVMDEAYRDPLDVAYTTKLRELSDSLVR-LQEMVETTVDLDALENHEFIIKLEFD---D 465 Query: 463 ETRSLRDQSKRIIASLQLKYAE------ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKD 516 R +R + RI + ++++ + K K + ++++ G+ + +T + A ++ + Sbjct: 466 GLRIIRKKLDRIRTEMDREFSKAADDLGQEKEKKIFLENHKVHGFCMRLTRTEAGCIRNN 525 Query: 517 LESKDRFIHRQTMSNLTRFTTLELIDLENRIT------NATNSALLIELESFEILSNAII 570 + T N FTT L L N T S+L+ E+ S ++ Sbjct: 526 ----SGYQECSTQKNGVYFTTKHLQSLRREFDQLSQSYNRTQSSLVNEVVSVAASYAPLL 581 Query: 571 EQSESLDNASQVIAIIDISIALAILAKEQ--NYCRPIID--NSTNFIVKDGRHPIVEKTL 626 E N + ++A +D+ ++ A + +Y RP I ++++ RHP +E Sbjct: 582 E------NLAGILAHLDVIVSFAHCSMHAPISYVRPKIHPRGQGRTLLREARHPCLEV-- 633 Query: 627 KQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPAS 686 Q FI ND +L D++ ++TGPNMGGKST++RQ +I +MAQ+G +VP S Sbjct: 634 --QDDVQFITNDVEL----DRSGSSFLIITGPNMGGKSTYIRQIGVIALMAQIGCFVPCS 687 Query: 687 YAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLD 746 A + I D + +RVG++D+ G STFM EM+ETA+IL AT +S +I+DE+GRGT+T D Sbjct: 688 EAELTIFDAILARVGASDSQLKGVSTFMAEMLETANILKSATAESLIIIDELGRGTSTYD 747 Query: 747 GLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN--ATLQVS--------DSN 796 G +AWA E++ C L ATHFHELT L++ K+ N T +S D Sbjct: 748 GFGLAWAISEHIVVEIGCSALFATHFHELTALAEQHKQVANLHVTAHISGTGDDAKADEK 807 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 + L+KV PGI D S+GI V +L P+ V+ A E + ++ L Y + Sbjct: 808 REVTLLYKVEPGICDQSFGIHVAELVRFPDKVVRMAKRKADELEDFTTKHNDNLGLQYSK 867 Query: 857 IQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTLE 903 ++ L + + E++K ++ + +K L A LE Sbjct: 868 DDVEQGSARLKEILVQWKEEVKAGDMSREEMVAKMKALVAADTKLLE 914 >gi|312217148|emb|CBX97097.1| similar to DNA mismatch repair protein msh3 [Leptosphaeria maculans] Length = 1139 Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 233/901 (25%), Positives = 410/901 (45%), Gaps = 131/901 (14%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK---------- 75 TPM QY+EIK + D+++ +G Y+ F +DA AS+ LGI GK Sbjct: 230 TPMEMQYLEIKRKHLDTVIVMEVGYKYKFFGEDARTASKELGIVCIP-GKFRYDEHPSEA 288 Query: 76 HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVVRLV 134 HL + P H ++++L++ H++ + QIE + L+A + R + L Sbjct: 289 HLDR-FASASFPTHRLQVHVKRLVQANHKVGVVRQIETAALKAAGNNRNAPFVRKLTNLY 347 Query: 135 TPGTLTED--QLLSPT--------DSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDR 184 T GT +D L + T + YL+ + + + + G+ + + D Sbjct: 348 TKGTYVDDVEGLETSTAGAGAGAQSTGYLLCITETNAKGWGSDEKVHVGLVAVQPATGDI 407 Query: 185 LISD-------------IMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHS 231 + D ++ I P E + +LS A K + +++ ++ NVF D S Sbjct: 408 IYDDFEDGFMRSEIETRMLHIAPAEFLVV-GDLSKATDK----LIQHLSASKTNVFGDRS 462 Query: 232 ISE-------------SRIADYYNITTVDTFGSFSQVEKTAA----------------AA 262 E S I+++Y + G S+ ++ A +A Sbjct: 463 RVERVEKPKTMAAQAYSHISNFYAGKMKSSQGGDSESDQQGAILDKVHQLSEHVTICLSA 522 Query: 263 AISYIKKTQMVNKPTI-GYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDY 320 I+Y+ + + + Y + +S + ++ S+LEI + + + + SL T+D Sbjct: 523 MITYLTDYGLEHVFDLTKYFQPFSARSYMLLNGNTLSSLEIYQNATDYTAKGSLFWTMDR 582 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQ--NPILINPIQKIL-KSSPDVPRS 377 + T G RL + I PL D ++ R+ ++ + N I ++ ++ +L + D+ + Sbjct: 583 TKTRFGQRLLRKWIGRPLIDKARLEERIAAVEELKEGENTIPVDKLKFLLGRIKTDLEKV 642 Query: 378 LSRLKIGR-GEPKDIAVIRDGIRSGINILNLFLKNDLPEE-------LRGAVEKLKKLPQ 429 L R+ + P+ +A +++ ++ + +L + PE+ L AV + K+ + Sbjct: 643 LIRIYYKKCSRPELLA----ALQTLQDLSSQYLSSKTPEKSGFKSILLSEAVSNVPKIYE 698 Query: 430 SLEKTLSSMLS-----DDLPTFKRDGGFLRDGADASL------DETRSLRDQSKRIIASL 478 + L + + DD +F R+ D D L D+ S + + + Sbjct: 699 DVNSFLDQINAKAAKEDDKYSFFREEHEAEDINDFKLSIASVEDDLNSHKKDAGAKLGKS 758 Query: 479 QLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMS---NLTRF 535 ++ Y I+ Y IEV +K E K Q +S + RF Sbjct: 759 KIDYVTVAGIE-----------YLIEVK-------RKSTEEKKVPASWQQISATKSTLRF 800 Query: 536 TTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAIL 595 T E+ + S +F L AI + + L + +A +D ++LA L Sbjct: 801 HTPEVKRMLQERDQYKESLAAACDAAFIRLLEAISSKYQQLRDCVSSLATLDALLSLATL 860 Query: 596 AKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLL 655 A + Y +P ++ + GRHP+VE+ L ++ ND LS + ++ L+ Sbjct: 861 ASQPGYVKPTFTDNVQIDITGGRHPMVEQILLDS----YVPNDLHLSHDHTRS----LLI 912 Query: 656 TGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMV 715 TGPNMGGKS+++R ALI IM Q+GSYVPA+ A +G++D +F+R+G+ DN+ G STFMV Sbjct: 913 TGPNMGGKSSYVRSAALIAIMGQIGSYVPATQAKLGMLDAVFTRMGAFDNMLQGESTFMV 972 Query: 716 EMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHEL 775 E+ ETA IL AT +S VILDE+GRGT+T DG++IA A ++++ + L TH+ L Sbjct: 973 ELSETADILKSATPRSLVILDELGRGTSTFDGVAIAEAVLDHVVCDLKSLTLFITHYQHL 1032 Query: 776 TDLSKSLK--RFHNATLQVSDSNEG--IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISR 831 L K + N ++ + G ++FL++ G + SYG+ V +LA +P VI+ Sbjct: 1033 AKLEKRFPGGQLKNVHMRFEERAGGKEVVFLYEAAEGTSHRSYGLNVARLARVPEKVIAV 1092 Query: 832 A 832 A Sbjct: 1093 A 1093 >gi|296034481|gb|ADG85112.1| mismatch repair protein [Solanum lycopersicum] Length = 943 Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 197/663 (29%), Positives = 322/663 (48%), Gaps = 59/663 (8%) Query: 285 DIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT-GAGGRLFAERIASPLTDST 342 ++ S + +DSAA L ++ + S + + SL ++ + T G G RL + PL D Sbjct: 289 NLDSYMRLDSAAMRALNVMESKSDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVD 348 Query: 343 KINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGI 402 +IN RLD + F+++ L +++ LK D+ R L+ R + + +SGI Sbjct: 349 EINCRLDLVQAFVEDAALRQDLRQHLKRISDIERLTHNLERKRASLLHVVKL---YQSGI 405 Query: 403 NILNLFLKNDLPEELRGAVEKL--KKLPQSLEKT-----LSSMLS-----DDLPTFKRDG 450 I ++K+ L E G L ++ SLEK L+ ++ DL + Sbjct: 406 RIP--YIKSVL-ERYDGQFAPLIRERYIDSLEKWSDDNHLNKFIALVETAVDLDQLENGE 462 Query: 451 GFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEVTS 507 + D +L + ++ ++ I +L + A + + K+LK+ G+ +T Sbjct: 463 YMISSAYDPNLSALKDEQETLEQQIHNLHKQTANDLDLPIDKSLKLDKGTQFGHVFRITK 522 Query: 508 SSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSN 567 +++ L S +I +T + +FT +L L +R + + E + Sbjct: 523 KEEPKVRRQLNS--HYIVLETRKDGVKFTNTKLKKLGDRYQKILDEYKSCQKELVARVVQ 580 Query: 568 AIIEQSESLDNASQVIAIIDISIALAILAKE--QNYCRPIID--NSTNFIVKDGRHPIVE 623 + SE + + ++ +D+ ++ A LA Y RP I ++ + I++ RHP VE Sbjct: 581 TVASFSEVFEGLAGSLSELDVLLSFADLASSCPTAYSRPNISPPDTGDIILEGCRHPCVE 640 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLW--LLTGPNMGGKSTFLRQNALIVIMAQMGS 681 Q FI NDC L G+ W ++TGPNMGGKST++RQ + V+MAQ+GS Sbjct: 641 A----QDWVNFIPNDCRLV------RGESWFQIITGPNMGGKSTYIRQVGVNVLMAQVGS 690 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VP A I I D +F+RVG+ D G STFM EM+ETASIL ATN+S VI+DE+GRG Sbjct: 691 FVPCDNATISIRDCIFARVGAGDCQLKGVSTFMQEMLETASILKGATNRSLVIIDELGRG 750 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK-----------SLKRFHNATL 790 T+T DG +AWA E++ E + L ATHFHELT L+ S+ FH + Sbjct: 751 TSTYDGFGLAWAICEHIVEEIKAPTLFATHFHELTALANENGNNGHKQISSVANFH-VSA 809 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQ--K 848 + S+ + L+KV PG D S+GI V + A P +V++ A + E Sbjct: 810 HIDSSSRKLTMLYKVQPGACDQSFGIHVAEFANFPQSVVALAREKASELEDFSPRAMMPN 869 Query: 849 DMRLYYPEIQTKESKNNLSKND---KLFVEKIKCLNLDEMSPLTALKTLYAVKAWTLEKY 905 D + + + + +++S+ + F++ L LD+M AL+ L +K LEK Sbjct: 870 DCKEVVSKRKREFDPHDVSRGTARARQFLQDFTQLPLDKMDLKQALQQLSQMKT-DLEKN 928 Query: 906 STD 908 + D Sbjct: 929 AVD 931 >gi|302765627|ref|XP_002966234.1| hypothetical protein SELMODRAFT_85179 [Selaginella moellendorffii] gi|300165654|gb|EFJ32261.1| hypothetical protein SELMODRAFT_85179 [Selaginella moellendorffii] Length = 940 Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 177/576 (30%), Positives = 272/576 (47%), Gaps = 56/576 (9%) Query: 292 IDSAARSNLEILRTLSGSREQSLLKTI--DYSITGAGGRLFAERIASPLTDSTKINTRLD 349 +D AA L +L + + + S L + S G G RL + PL D +I R D Sbjct: 296 LDVAALRALHVLESKNDPNKNSTLFGLMNHTSTAGMGKRLLNRWLKQPLLDVDEIKHRHD 355 Query: 350 SINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFL 409 + F+++ L ++ LK PDV R +L+ R +D+ + +++ + Sbjct: 356 VVQMFVEDAELRESLKNCLKRVPDVERLTRKLERSRATLQDLVKLYQ-----VSVRLSVI 410 Query: 410 KNDLPE---ELRGAVEKLKKLPQSLEKTLSSMLSD---------DLPTFKRDGGFLRDGA 457 K+ L E AVE+ +P E TL+ L DL K + Sbjct: 411 KDALERYEGEFASAVEERYVVPLR-EWTLAEHLGRYDALIESAIDLDQIKNGEYIISASY 469 Query: 458 DASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVLK 514 D+SL ++ RD + I + A + + K+LK+ G+ +T ++ Sbjct: 470 DSSLKTIKADRDTVEEEIREAHEQAANDLDLPADKSLKLDKTTQWGHVFRITKKEEPKVR 529 Query: 515 KDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSE 574 K L + +I +T + +FTT +L L R + T + + + + L E Sbjct: 530 KKLAVQ--YITLETRKDGIKFTTSKLRRLSERYGSLTENYTNTQRDLVKRLVQVSQSYVE 587 Query: 575 SLDNASQVIAIIDISIALAILA--KEQNYCRPII--DNSTNFIVKDGRHPIVEKTLKQQS 630 + A+ ++A +D+ ++ A LA Y RPII N + I++ RHP VE Q Sbjct: 588 IFNGAANLLAELDVLLSFADLAVSSPTPYVRPIITGQNEGDIILEGSRHPCVEA----QD 643 Query: 631 SKPFIANDCDLSCPNDKNSGKLW--LLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYA 688 FI NDC L GK W ++TGPNMGGKST++RQ + ++MAQ+G +VP A Sbjct: 644 DVNFIPNDCRLVI-----RGKSWFQIITGPNMGGKSTYIRQIGVNILMAQVGCFVPCDRA 698 Query: 689 HIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGL 748 I I +F+RVG+ D G STFM EM+ET++IL AT S +I+DE+GRGT+T DG Sbjct: 699 EISIRSCIFARVGAGDCQLRGVSTFMAEMLETSAILKSATETSLIIVDELGRGTSTYDGF 758 Query: 749 SIAWATIEYLHETNRCRGLLATHFHELTDLSK---------------SLKRFHNATLQVS 793 +AWA EY+ + R L ATHFHELT +S + FH + + Sbjct: 759 GLAWAICEYIVDVTRAPTLFATHFHELTSISHRQGPSAHGPSKGPPVGISNFH-VSAHID 817 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVI 829 S+ + L+KV G D S+GI V + A P V+ Sbjct: 818 PSSRKLTMLYKVEDGPCDQSFGIHVAEFARFPECVV 853 >gi|260903520|ref|ZP_05911915.1| DNA mismatch repair protein MutS [Vibrio parahaemolyticus AQ4037] gi|308108709|gb|EFO46249.1| DNA mismatch repair protein MutS [Vibrio parahaemolyticus AQ4037] Length = 447 Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 146/456 (32%), Positives = 240/456 (52%), Gaps = 29/456 (6%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIP 82 + TPMM+QY+++K+ NP+ L+FYRMGDFYELF+DDA AS+ L I+LTKRG G+ IP Sbjct: 5 QKHTPMMQQYLKLKAENPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGSSAGEPIP 64 Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 M GVP H Y+ KL+++G +AICEQI P + K V R VVR+VTPGT+T++ Sbjct: 65 MAGVPFHAVEGYLAKLVQLGESVAICEQIGDPATS-----KGPVERKVVRIVTPGTVTDE 119 Query: 143 QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIS-TSNHDRLISDIMRIDPREIIFSE 201 LLS N + A+ ++ A +D+++G F+++ + +++++ R PRE++F E Sbjct: 120 ALLSERLDNLIAAIYHHNGKFGYATLDVTSGRFQLTEPETEESMMAELQRTAPRELLFPE 179 Query: 202 KELSHAEYKSLFETLG-----NVAVAQPNVFFDHSISESRIADYYNITTVDTFG-SFSQV 255 FE + N +P F+ ++ ++ + + FG + + Sbjct: 180 D----------FEPVHLMSNRNGNRRRPVWEFELDTAKQQLNQQFGTRDLVGFGVEHASL 229 Query: 256 EKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLL 315 AA I Y+K TQ P I + ++ +D+A R NLEI + L+G + +L Sbjct: 230 GLCAAGCLIQYVKDTQRTALPHIRSLTFDRQDHSVILDAATRRNLEITQNLAGGTDNTLA 289 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVP 375 +D+ T G R+ + P+ +N RLD+I I++ L +Q LK D+ Sbjct: 290 AVLDHCSTPMGSRMLKRWLHQPMRCIDTLNNRLDAIG-EIKDQGLFTDLQPTLKQIGDIE 348 Query: 376 RSLSRLKIGRGEPKDIAVIRDGIRS--GINILNLFLKNDLPEELRGAVEKLKKLPQSLEK 433 R L+RL + P+D+A +R ++ + L L + +L + ++ + LE+ Sbjct: 349 RILARLALRSARPRDMARLRHAMQQLPELESLTASLTHPYLVKLAQYAAPIDEVCELLER 408 Query: 434 TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRD 469 + ++ P RDGG + +G + LDE R L D Sbjct: 409 A----IKENPPVVIRDGGVIAEGYNEELDEWRKLAD 440 >gi|118087631|ref|XP_426110.2| PREDICTED: hypothetical protein [Gallus gallus] Length = 919 Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 188/682 (27%), Positives = 325/682 (47%), Gaps = 60/682 (8%) Query: 250 GSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPERE----DIQSTLFIDSAARSNLEILRT 305 + ++EK A +++S + K + + + E D+ + +D+AA L + ++ Sbjct: 242 AALPEMEKQVAVSSLSAVIKFLELLSDDSNFGQYELTTFDLSQYMVLDNAAVQALNLFQS 301 Query: 306 L--SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINP 363 + + QSL ++ T G RL + I PL D +I RL+ + F+ + L Sbjct: 302 SVENANNTQSLAGLLNKCRTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVVDTELRQG 361 Query: 364 IQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEE---LRG 419 +Q+ +L+ PD+ R + + +D + I N++ K++ + L Sbjct: 362 LQEDLLRRFPDLNRLAKKFQRQAATLQDCYRMYQAINQLPNVVQALEKHEGAHQMLLLAV 421 Query: 420 AVEKLKKLPQSLEKTLSSMLSD-DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASL 478 + L + K L + + D+ + ++ D +L E R ++ + + +L Sbjct: 422 FITPLNDIHSDFSKFLEMIETTLDMDKVENHEFLVKASFDPNLTELREKMNELEESMQTL 481 Query: 479 QLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRF 535 A+E + K++K++ N+ G+ +T VL+ +++ K T N +F Sbjct: 482 LKSAAKELGLEAGKSIKLESNSQFGHHFRITCKEEKVLRNNMKYK----ITDTQKNGVKF 537 Query: 536 TTLELIDLENRITNATNSALLIELESFEILSNAIIEQ--------SESLDNASQVIAIID 587 T +L +A N + E +E +AI+++ +E + + VIA +D Sbjct: 538 TNSKL--------SAINEEYIKNREEYEEAQDAIVKEIINIASGYAEPIQTMNDVIAQLD 589 Query: 588 ISIALAILAKEQN--YCRPII--DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSC 643 ++ A ++ Y RP+I ++K RHP +E Q FI ND Sbjct: 590 AIVSFAHVSNGAPVPYVRPVILEKGQGRIVLKGARHPCIEV----QDEVAFIPNDVTF-- 643 Query: 644 PNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSA 703 +K ++TGPNMGGKST++RQ +IV+MAQ+G +VP + A I IVD + +RVG+ Sbjct: 644 --EKGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCNSAEITIVDCILARVGAG 701 Query: 704 DNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNR 763 D+ G STFM EM+ETASIL A+ S +I+DE+GRGT+T DG +AWA EY+ Sbjct: 702 DSQLKGVSTFMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEYIASKIC 761 Query: 764 CRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAG 823 + ATHFHELT L+ + +N + S++ + L++V G+ D S+GI V +LA Sbjct: 762 AFCMFATHFHELTALADQVPTVNNLHVTALTSDDTLTMLYRVKAGVCDQSFGIHVAELAA 821 Query: 824 LPNTVISRAYDI---LKTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKL---FVEKI 877 P VI A + L+ F+ + + + E K + +K+ F+ ++ Sbjct: 822 FPKHVIESAREKALELEEFQDIGRPKESE-----GEPAAKRCYREREEGEKIIQDFLSQV 876 Query: 878 KCLNLDEMSP---LTALKTLYA 896 K L L +MS T LK L A Sbjct: 877 KALPLTDMSEEDIKTKLKQLRA 898 >gi|328792194|ref|XP_001121207.2| PREDICTED: DNA mismatch repair protein Msh2 [Apis mellifera] Length = 920 Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 231/841 (27%), Positives = 385/841 (45%), Gaps = 89/841 (10%) Query: 45 FYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHY---IQKLIKI 101 F+ D+Y L +DAL A++ + T T K +G D + NH+ I+ L+ + Sbjct: 36 FFNRSDYYTLHGNDALFAAQEIFKT-TSVCKMIGADPYKTEGVILNKNHFESFIRDLLLV 94 Query: 102 GHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT--EDQLLSPTD---SNYLMAV 156 ++E + N++ + + +PG LT ED L D S ++AV Sbjct: 95 KQY-----RVEVYINQGTAKNQNWI---LEYKGSPGNLTQFEDILFGNNDIAVSVRVIAV 146 Query: 157 -----ARIRTEWAIAWIDISTGIFKISTSNHDRLISD----IMRIDPREIIFSEKELSHA 207 + R ++ +D + +F + + S+ I+ + P+E + + E S+ Sbjct: 147 KLGIEGKFRI-VGLSCVDTTATLFSVCEFQDNESFSNLESLIVTLAPKECLLIQGEGSY- 204 Query: 208 EYKSLFETL--GNVAVA--QPNVFFDHSISESRIADYYNITTV-----DTFGSFSQVEKT 258 E+++L + + NV + + N F SES I D + S +V T Sbjct: 205 EFQTLKQLIERNNVMITTRKKNEF----SSESVIQDLNTLIRFKKGQQQNVQSLPEVNLT 260 Query: 259 ----AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFI--DSAARSNLEI------LRTL 306 A +A I Y+ T ++ + + I+ + ++ DSAA L I L Sbjct: 261 FAMSATSALIKYLDLTS--DEGNLNQFSIDQIKQSRYLKLDSAAIKALNIEPRIDTSCVL 318 Query: 307 SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQ-NPILINPIQ 365 +G+ S+L +D T G RL A+ I PL D + I R D + + N + N + Sbjct: 319 NGNAPTSILNLLDKCRTPQGHRLLAQWIRQPLKDLSLIKERHDIVEVLVNDNELRSNLNE 378 Query: 366 KILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDL-------PEELR 418 L+ PD+ +L + +D I + +L FLK ++ + L Sbjct: 379 DHLRRIPDLQVLAKKLARKKATLQDCYKIYTCMSHLPILLEQFLKINIIALKTMFTDPLS 438 Query: 419 GAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASL 478 ++ + K Q +E+T+ DL + ++ +R D L E + D+ + + + Sbjct: 439 EFIKDMDKFQQMVEQTI------DLDSAEKGDFLVRPEFDDELKELKCTMDEIEIKLQAQ 492 Query: 479 QLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRF 535 K A++ I K LK++ N GY+ VT VL+ +K ++I + + RF Sbjct: 493 LNKVADDLSIEAGKILKLESNQQFGYYFRVTLKEEKVLR----NKKQYIILDSNKSGVRF 548 Query: 536 TTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDI--SIALA 593 + +L DL + + ++ + + + S ++ V+A ID+ + A A Sbjct: 549 RSNKLNDLNDEYIGIRDKYIMEQKKVVAEIIEIAAGYSNTIKAIGNVLASIDVLTAFASA 608 Query: 594 ILAKEQNYCRP--IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGK 651 + + Y RP + F + RHP +E Q +IAND N K Sbjct: 609 AICANKPYVRPEMLPSEKGEFNLIQVRHPCLEV----QEGVDYIANDI-----NFKRECH 659 Query: 652 LWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRS 711 ++TGPNMGGKST++R + +MA +GS+VP A I ++D + +RVG+ D G S Sbjct: 660 FCIITGPNMGGKSTYIRSAGVTALMAHIGSFVPCDQARISLLDCILARVGADDCQLKGLS 719 Query: 712 TFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATH 771 TFM+EMIETA+IL AT S V++DE+GRGT+T +G IAW+ EYL + +C L ATH Sbjct: 720 TFMMEMIETAAILKTATCNSLVLIDELGRGTSTYEGCGIAWSIAEYLAKEIKCYCLFATH 779 Query: 772 FHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISR 831 FHE+T L + + N + N + L+K+ PGI D S+GI V K+A P VI Sbjct: 780 FHEITKLEEEISTVKNQHVTALVDNNKLTLLYKIKPGICDQSFGIHVAKMANFPQDVIEF 839 Query: 832 A 832 A Sbjct: 840 A 840 >gi|325192358|emb|CCA26800.1| AlNc14C417G11489 [Albugo laibachii Nc14] Length = 778 Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 198/640 (30%), Positives = 307/640 (47%), Gaps = 71/640 (11%) Query: 286 IQSTLFIDSAARSNLEILRTLSGSREQ--SLLKTIDYSITGAGGRLFAERIASPLTDSTK 343 I S + +D +A +L +L +SGS++ S+L+ ++ T G RL + I PL Sbjct: 174 ISSAMQLDGSAIWSLNLL-PISGSKQSNGSVLEILNRGKTSIGRRLLEQWIRQPLLQYEA 232 Query: 344 INTRLDSINFFIQNPIL-INPIQKILKSSPDVPRSLSRLKIGRGEPKDIA-------VIR 395 I R + + F+ NP L I +++ +++ PD+ R ++L+ R + I V + Sbjct: 233 ITERQEIVQTFVDNPSLRIELLEESMRAIPDLDRLCTKLE--RKKKVKIEHLISVYDVSK 290 Query: 396 DGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS--------DDLPTFK 447 + I LN ++ + +R E+ ++++ L L+ D PTF Sbjct: 291 VVLPQLITTLNTNVQLMATDNVRHLTERYINPLETIQSDLKGYLNLVEEVVDLDTRPTF- 349 Query: 448 RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTS 507 + D L R DQ I K A ET ++K + + G+ + + Sbjct: 350 ----IINAKHDPELARIREEWDQLTLEIEQEHQK-ARETIGGDIKCEKDKTRGFVFRIIN 404 Query: 508 SSASVLKKDLESKDRFIH-RQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILS 566 ++ SK ++H Q + N FTT +L L T + E +L Sbjct: 405 KK----EEARISKLPYVHICQVLVNGVHFTTTKLKALA---TEYKRVQMEYEKRQAHVLE 457 Query: 567 NAIIEQSE---SLDNASQVIAIID--ISIALAILAKEQNYCRPIIDNSTNFI-VKDGRHP 620 A+ S L+ + ++A +D + A A YCRPI+ T I + + RHP Sbjct: 458 AAVEVASTYVPVLERTTFLLAELDCLLGFAHAACNAGSGYCRPIMSRDTECIQLINARHP 517 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 VE Q FI N+ DL+ +N ++TGPNMGGKST++RQ I +MAQ+G Sbjct: 518 CVE----LQDDVDFIPNNFDLA----RNKSHFQIITGPNMGGKSTYIRQLGTIAVMAQVG 569 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VPA A + I DKL RVG+ D+ G STFM+EM+E +SIL+ AT +S VI+DE+GR Sbjct: 570 SFVPADAAQLPIFDKLLVRVGAGDSQQQGVSTFMMEMLEASSILHNATERSLVIIDELGR 629 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS----N 796 GT+T DG +AWA EYL R L ATHFHELT LS + N T+ S Sbjct: 630 GTSTYDGFGLAWAISEYLITNTRAMTLFATHFHELTALS---DEYPNGTVNRHTSAFAAK 686 Query: 797 EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPE 856 E + ++++ G S+G+ V +LAG P+ VI A +K +L Y E Sbjct: 687 ENVTMMYQIKKGPCMESFGVHVAELAGFPSDVIKSA-------------KRKSQQLEYAE 733 Query: 857 IQTKESKNNLSKNDKL--FVEKIKCLNLDEMSPLTALKTL 894 ++K+ KN + FV++ L +D MSP AL+ + Sbjct: 734 HTISKTKSLTCKNQRSNEFVQQFAALPMDTMSPQDALQAV 773 >gi|154309887|ref|XP_001554276.1| hypothetical protein BC1G_06864 [Botryotinia fuckeliana B05.10] gi|150851652|gb|EDN26845.1| hypothetical protein BC1G_06864 [Botryotinia fuckeliana B05.10] Length = 833 Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 180/586 (30%), Positives = 296/586 (50%), Gaps = 62/586 (10%) Query: 283 REDIQSTLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDS 341 + D+ + +D++A L ++ GS+ SL +++ T G RL A+ + PL Sbjct: 189 QHDLSQFMKLDASALKALNLMPGPRDGSKTMSLYGLLNHCKTPVGSRLLAQWLKQPLMSL 248 Query: 342 TKINTRLDSINFFIQNPILINPIQKI-LKSSPDVPRSLSRLKIGRGEPKDIA-----VIR 395 +I R + F+++ L IQ+ ++S PD+ R R + +D+ VIR Sbjct: 249 EEIEKRQQLVEAFVEDQELKQTIQETHMRSIPDLYRLAKRFQKKLANLEDVVRAYQVVIR 308 Query: 396 --DGIRSGINILNLFLKNDLPE----ELRGAVEKLKKLPQSLEKTLSSMLSDD-----LP 444 D I++ ++++ ++ L E +LRG L L + +E T+ D+ P Sbjct: 309 IPDLIKTLEDVMDEKYRDALDEAYTDKLRGCNVSLGNLAEMVETTVDLEAMDNHEYIIKP 368 Query: 445 TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIE 504 F +R LD+ + DQ RI+A +E + K + +++N G+ + Sbjct: 369 EFDDSLNIIR----RKLDKLKYEMDQEFRIVAK---DLGQEIE-KKIFLENNKVHGWCMR 420 Query: 505 VTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT------NATNSALLIE 558 +T + AS ++ +K ++ QT N FTT +L+ + N T S+L+ E Sbjct: 421 LTRTEASCIR----NKSKYQECQTQKNGVYFTTSKLLSIRREFDQLSENYNRTQSSLVNE 476 Query: 559 LESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQ--NYCRPIID--NSTNFIV 614 + + +IEQ S V+A +D+ ++LA + +Y RP + + + I+ Sbjct: 477 VVATAASYCPVIEQLAS------VLAHLDVIVSLAHTSAHAPTSYVRPKMHPRGTGSTIL 530 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 K+ RHP +E Q FI ND L ++ ++TGPNMGGKST++RQ +I Sbjct: 531 KEARHPCME----MQDDVQFITNDVSLI----RDESSFLIITGPNMGGKSTYIRQIGVIA 582 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 +MAQ+G +VP S A + I D + +RVG++D+ G STFM EM+ETA+IL AT++S +I Sbjct: 583 LMAQIGCFVPCSEAELTIFDCILARVGASDSQLKGVSTFMAEMLETANILKSATSESLII 642 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN----ATL 790 +DE+GRGT+T DG +AWA EY+ + ATHFHELT L+ + + N A + Sbjct: 643 IDELGRGTSTYDGFGLAWAISEYIVREIGAFSMFATHFHELTALADTFPQVKNLHVVAHI 702 Query: 791 QVSDSNE----GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 S++ + L+KV GI D S+GI V +L P VI A Sbjct: 703 DTEPSSQERKREVTLLYKVEEGICDQSFGIHVAELVKFPEKVIGMA 748 >gi|256078667|ref|XP_002575616.1| hypothetical protein [Schistosoma mansoni] gi|238660858|emb|CAZ31849.1| expressed protein [Schistosoma mansoni] Length = 1074 Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 264/978 (26%), Positives = 432/978 (44%), Gaps = 196/978 (20%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 EE TP MRQ+ E+KS D ++F+++G FYE++ DA++ + LG+ K Sbjct: 122 EEFKTKQTPGMRQWWELKSRYTDVILFFKVGKFYEMYHMDAMIGVKELGLVFMK------ 175 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEA------KKRGNKSLVRRNVVR 132 CG P +L++ G+++A EQ ES ++A +K ++ +VRR V + Sbjct: 176 GSFAHCGFPEVAFPRMADQLVRKGYKVARIEQTES-IDAMNERCKRKSSSEKVVRREVCQ 234 Query: 133 LVTPGTLTEDQL----LSPTDSNYLMAVARIRTE------WAIAWIDISTGIFKISTSNH 182 ++TPGT T L+ DS +L+AV + + I ++ STG I Sbjct: 235 IITPGTCTASTRDLINLAHPDS-FLLAVVESHGDKSYPFAFGIGLLNASTGKINIGQFLD 293 Query: 183 DRLISDI---MRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQ---PNVFF---DHSIS 233 DR S + + P + E+ + + KSL +T + + P F +++ Sbjct: 294 DRHCSRLRTFLSHYPPNQLLIERGTAGSAIKSLIKTSLSCVPTEFLTPTKQFWSAKNTVQ 353 Query: 234 ESRIADYYNITTVDTFGSFSQVEKTAA--------------------------------- 260 E ADY+ T +T + V K ++ Sbjct: 354 ELETADYFPKQTSNTTVDSNHVSKVSSFPDKENWPDVLLNMLSEDDPLGRTVKSEWELAF 413 Query: 261 --AAAISYIKKTQMVNKP--TIGY-------------PEREDIQSTLFIDSAAR------ 297 A+ Y + ++++ ++G+ +R LF D+ ++ Sbjct: 414 RCLGALIYYLRYCLIDREVLSLGFIDVYVPIDMKNANSQRSPGSIELFYDTQSQMVLDNI 473 Query: 298 --SNLEILR-TLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFF 354 SNL+I+R + GS+E SLL+ ++ T G RL + I +P + I R +I Sbjct: 474 TLSNLDIIRNNVDGSQEGSLLQRLNTCCTFFGRRLLRQWITAPPCNPNVIRQRQLAIENL 533 Query: 355 IQNPILINPIQKILKSSPDVPRSLSRL-----KIGRGEPKDIAVIRDGIR-SGINILNLF 408 I +I +++ L PD+ R ++++ K + P A+I + ++ S NI++ Sbjct: 534 ISISDIIPKLREKLAQLPDLERLITKIHLLGSKGDKNHPDSRAIIFEEVQYSRKNIIDFV 593 Query: 409 LKNDLPEELRGAVEKLKKLPQS---LEKTLS-SMLSDDLPTF----------------KR 448 D E + ++ P S L+K ++ + L + P KR Sbjct: 594 ATLDGFELSYKIIHEINHYPLSSAYLKKLVTLTNLGGNFPDITEKINYFKNAFDAEKAKR 653 Query: 449 DGGFLRD-GADASLDETRSLRDQSKRIIASLQ---LKYAEE--TKIKNLKIKHNNNLGYF 502 +G + G D DE+ S + KRI+ + LK+++ T++ N Y Sbjct: 654 EGRITPEPGIDPEYDESLS---EIKRIVEDMDRFLLKWSKTFGTRLAYWGTGRNR---YQ 707 Query: 503 IEVTSSSASVLKK--DLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 IE+ S AS + L S+ + + R T S + + EL E R + S + Sbjct: 708 IEIPESLASRVPNSWQLSSQRKGVKRYTCSETQEWLS-ELTAAEERKDASLRSIMQHIFS 766 Query: 561 SFEILSNAIIEQSESLDN---ASQVIAIIDISIALAILAKEQN--YCRP-IID--NSTNF 612 SF SES + A +A +D IAL + + + C P ID +ST Sbjct: 767 SF----------SESFTHWHMAMSCLAELDCIIALYLYSTNASDVMCLPEFIDLNSSTEP 816 Query: 613 IVK--DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDK--------------NSGKLWLLT 656 +++ DG HP + T S I+ND L + N+ + L+T Sbjct: 817 LLEIVDGIHPCLINTF---SGGDIISNDIKLGTTSSMINSPTQHHTLHDMFNNASVILVT 873 Query: 657 GPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVE 716 GPNMGGKST +RQ AL+VI+A +G +PA + VD++FSR+G++D + SG STF+VE Sbjct: 874 GPNMGGKSTLMRQAALLVILAHLGCRIPAKSCKLTPVDRIFSRLGASDRMLSGESTFLVE 933 Query: 717 MIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETN-------RCRGLLA 769 + ETASIL+ T S V++DE+GRGT+T DG ++A A + YL + N R L + Sbjct: 934 LSETASILHHITPHSLVLMDELGRGTSTHDGSALAGAVVSYLAKPNGRFFNGSGPRTLFS 993 Query: 770 THFHELTDLSKSLKRF--------------HNATLQVSDSN-----EGIIFLHKVIPGIA 810 TH+H L D + R H A + ++S E I FL+K IPG Sbjct: 994 THYHSLVDQVANKDRSTSDEDINHLCIGLGHMACMVEAESESTNGLENITFLYKFIPGAC 1053 Query: 811 DHSYGIQVGKLAGLPNTV 828 SYG +LA LP+ V Sbjct: 1054 PKSYGFNAARLAMLPDKV 1071 >gi|330790177|ref|XP_003283174.1| hypothetical protein DICPUDRAFT_52102 [Dictyostelium purpureum] gi|325086855|gb|EGC40238.1| hypothetical protein DICPUDRAFT_52102 [Dictyostelium purpureum] Length = 1030 Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 232/904 (25%), Positives = 411/904 (45%), Gaps = 132/904 (14%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ +Q++ IK NPD+++ G Y+ F DDA +A++ L I ++ K+ Sbjct: 96 TPLEQQFLAIKKDNPDTVLMVECGYKYKFFGDDAEIANKVLNIY-----SYVAKNFLNAS 150 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESP-LEAKKRGNKSLVRRNVVRLVTPGTLTEDQL 144 +P ++++L+ G+++ + EQ E+ L+A R + R+ T T +D++ Sbjct: 151 IPCQRLYFHLRRLVLAGYKVGVVEQTETAALKAISSSKSQPFERKLTRIYTSSTFIDDEV 210 Query: 145 ---LSPTDSNYLMAVARIRTEWA--------------IAWIDISTGIFKISTSNHDRLIS 187 L + YL++ T + I+++ +S +I +D Sbjct: 211 DDSLQNSSPQYLVSFYEASTSASGTNSSDNTTPSVETISFVAVSIRTGEII---YDTFKD 267 Query: 188 DIMR---------IDPREIIF-------------SEKELSHAEYKSLFE-TLGNVAVAQ- 223 IMR + P EI+ S + S YK L + N A Q Sbjct: 268 SIMRSQLETALTHLKPSEILMPPSVLKKEKSNTSSGYKFSDLTYKCLKSYSKCNSARTQN 327 Query: 224 -PNVFFDHSISESRIADYY---NITTV-DTFGS-FSQVEKTAAAAAISYIKKTQMVNKPT 277 N FD+ ++ ++ ++Y N + V D S ++ + +SY+ Q ++ + Sbjct: 328 MDNQIFDYDVALMKLQEFYDNNNCSQVLDHIKSIMNKYQIICLGVLLSYLD--QFIHFGS 385 Query: 278 I-GYPEREDIQST---LFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSITGAGGRLFAE 332 I P T L + + +NLE+L S + E+ SL+ ++ + T +G R+F Sbjct: 386 ILKVPSNFKAFRTANHLVLPHSTITNLELLTNESDNSEKGSLIWLMNRTSTFSGRRMFTN 445 Query: 333 RIASPLTDSTKINTRLDSINFFIQ----NPILINPIQKILKSS-PDVPRSLSRLKI-GRG 386 + PL I R ++ ++ N + I + KS PD+ R+LSR+ + Sbjct: 446 WLCKPLNQLDSIKERQSAVEELVEGIKVNSNQVASITALFKSHIPDLQRNLSRVYYKNQC 505 Query: 387 EPKDIAVIRDGIRSGINILNLFLK----NDLPEELRGAVEKLK----------KLPQSLE 432 PK+ ++ IL LF + L + K+K KL + + Sbjct: 506 TPKEFLNTMSSLK---RILELFKEISKGYTFKSNLLNQIFKIKTNSDDDNQDDKLSERIN 562 Query: 433 KTLSSMLSDDLPTFKRDGGFLRDGADASLD--------ETRS----LRDQSKRIIASLQL 480 LS++ D + + +D LD ET+ + ++ K+I+ ++ Sbjct: 563 YFLSNLNHDAAKDYSSVNC---EKSDLWLDFEKYPKILETKKRIKVIEEEFKKILK--EI 617 Query: 481 KYAEETKIKNLKIKH--NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTL 538 +Y E K +L+ H NL Y +E+ A V K +I + R+ Sbjct: 618 RY--ELKKPSLEYLHMPKLNLEYLVELPPKFAGVPK-------TWIKVSSTQKAIRYHPP 668 Query: 539 ELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKE 598 E+++ ++ + + ES+ N I+ +D +LA ++ Sbjct: 669 EILEQLKLLSQCRETLKIQAQESWISFLGEFTLDYSLFSNFVHKISNLDCLFSLAKISCM 728 Query: 599 QNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGP 658 Y +P + V +GRHP+VE L + ++ N LS N + ++TGP Sbjct: 729 DGYVKPEFTSEPGIQVVEGRHPVVEVLL----NGTYVPNSVKLS----SNKERAMIITGP 780 Query: 659 NMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMI 718 NMGGKS+F+RQ +LIVIMAQMG +VPA +G+ D +++R+G+ DN+ G STF +E+ Sbjct: 781 NMGGKSSFIRQTSLIVIMAQMGCFVPAKECKLGVFDAIYTRMGAHDNIEKGSSTFFIELQ 840 Query: 719 ETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDL 778 ET+ IL AT S VILDE+GRGT+T DG+++A++T++++ + +C L TH+ L L Sbjct: 841 ETSEILKHATPNSLVILDELGRGTSTHDGVALAYSTLKFIVDEKKCFCLFVTHYPLLAQL 900 Query: 779 SKS----LKRFHNATLQV---SDSNE---GIIFLHKVIPGIADHSYGIQVGKLAGLPNTV 828 + +H ++ SDS +IFL++++ G A +SYG+ V +AGLPN + Sbjct: 901 ESMYPNIIGNYHMGFIEKKVESDSENFIPKVIFLYQLVQGAAQNSYGLNVANMAGLPNEI 960 Query: 829 ISRA 832 + A Sbjct: 961 LKIA 964 >gi|237736816|ref|ZP_04567297.1| DNA mismatch repair ATPase MutS [Fusobacterium mortiferum ATCC 9817] gi|229420678|gb|EEO35725.1| DNA mismatch repair ATPase MutS [Fusobacterium mortiferum ATCC 9817] Length = 453 Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 144/469 (30%), Positives = 251/469 (53%), Gaps = 34/469 (7%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 + TP+M QY EIKS DS++F+R+GDFYE+FF+DA+ AS+ LG+TLT R + G D+P+ Sbjct: 2 AETPLMSQYREIKSQYTDSILFFRLGDFYEMFFEDAVTASKELGLTLTSRNREKGIDVPL 61 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQ 143 G+P H+ YI KL+ G+++AIC+Q+E P + K +V+R V R++TPGT+ + Sbjct: 62 AGIPYHSVASYIAKLVNKGYKVAICDQVEDP-----KAAKGIVKREVTRVITPGTIIDTD 116 Query: 144 LLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHD----RLISDIMRIDPREIIF 199 L +NYLM + AIA+IDI+TG FK S + RL+ +I +I P+EI+ Sbjct: 117 FLDEKSNNYLMGIKITDEVGAIAYIDITTGEFKASEIVGEDILFRLLGEINKIAPKEILL 176 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEK-T 258 EK ++ Y F+ +++ + + +E + DY+ + ++++FG + T Sbjct: 177 DEK--TYDSYIDEFKKHNSLSDIKFTKTVERRKAEDYLKDYFKVISLESFGMKDKKSAIT 234 Query: 259 AAAAAISYI---KKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ--- 312 + + Y+ +K + + I Y E++ ++ + NL+I + RE+ Sbjct: 235 VSTMVLEYVVDLQKGKELPITNISYVNSENVME---LNITTQRNLDI---IDNQREKNSA 288 Query: 313 -SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 +LL +D +T G RL + I +PL D KI R + FFI+N +L I++ LK Sbjct: 289 GTLLWVMDNCMTSMGSRLLKKFIKNPLLDVEKIKERQKDVGFFIENVLLREEIREKLKDI 348 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE-ELRGAVEKLKKLPQS 430 D+ R + +L + +D+ ++ I++ + I L N L E E++ +E Sbjct: 349 YDIERIIGKLILETENGRDLIALKTSIKNSLEIYKLLKGNPLFEIEVKTLIE-------- 400 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQ 479 + + + D+ P R+GG ++ G ++ LDE ++ K I ++ Sbjct: 401 IYNMIEKAIVDEPPFSIREGGVIKSGYNSDLDELHNISKDGKDYILEIE 449 >gi|125978269|ref|XP_001353167.1| GA20021 [Drosophila pseudoobscura pseudoobscura] gi|54641920|gb|EAL30669.1| GA20021 [Drosophila pseudoobscura pseudoobscura] Length = 1189 Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 240/929 (25%), Positives = 418/929 (44%), Gaps = 138/929 (14%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 E+ L + +P +RQ+ +KS N D ++F+++G FYEL+ DA + LG T ++ Sbjct: 255 EKFLNNLSPGVRQWWVLKSNNFDCVLFFKVGKFYELYHGDADVGVNELGFT------YMR 308 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNK-------SLVRRNVV 131 + G P + + LI G+++A EQ E+P +R + +V R + Sbjct: 309 GEFAHSGFPEISFDKMSTILIDRGYKVARVEQTETPDMVTERCKRIKSTKFDKVVAREIC 368 Query: 132 RLVTPGTL---TEDQLLSPTDSNYLMA-VARIRTEWA---IAWIDISTGIFKIST----S 180 ++ GT ++ ++ NY++A V + W+ I +ID S G F + Sbjct: 369 QITNRGTQVFGSQCKIGPNHQPNYMLALVEQDEGTWSRFGICFIDTSIGDFHLGEFEDDK 428 Query: 181 NHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRI--- 237 N RL++ + P ++ + LS + + LG + Q H + + Sbjct: 429 NCSRLLTLLSHHMPVLLLSEKSALSLRTQQVVRTVLGGILREQLPCNGAHVCNAEKTLKL 488 Query: 238 -------------------------ADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQM 272 +D+ +T D + ++ A + +I K + Sbjct: 489 LAERYYAGNGSEDNWPLVLRTMQSDSDHLGLTPSDNY----KLALKALGQCVYFINKCLL 544 Query: 273 VNK--PTIGY----PEREDIQSTLFIDSAARSNLEIL--RTLSGSR----EQSLLKTIDY 320 K P Y P + ++ + SA R + +L TLS R E +L T+D+ Sbjct: 545 EPKVLPMARYQMYVPPDQLAEAKPAVVSALRRSHMVLDATTLSNLRIIGEEHTLQSTLDH 604 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR 380 T G R+ + +P D + R +I ++ P + ++ +L PD R+L++ Sbjct: 605 CCTKFGKRMLHHWLCAPSCDIEILKERQAAIGELLRLPSELQEMRALLAPMPDFERNLAQ 664 Query: 381 LKI-------GRGEPKDIAVIRD----------GIRSGINILNLFLKNDLPEELRGAVEK 423 + + G P A++ + G + + N K LP + Sbjct: 665 IHLFGNKQVKQTGHPDSRAILFEEKIYNKQKLVGFMAVLKGFNALTK--LPLMFQQCETP 722 Query: 424 LKKLPQSLEKTLSSM--LSDDL----PTFKRDG----GFL--RDGADASLDETRSLRDQS 471 L K L + S LS++L F D G + + G DA D + D+ Sbjct: 723 LIKRITQLTTSGGSFPDLSEELRYFSTAFDHDAAAKTGVIAPQPGMDAEYD---VVMDRI 779 Query: 472 KRIIASLQLKYAEETKIKNLKIKH--NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTM 529 + I L+ E+ + ++ + ++ Y ++V S A K + + ++ Sbjct: 780 EEIEKRLKTYLVEQERHFGCRVTYFGSDKKRYQLDVPESHAHKANKSYALEGQTKGKKPS 839 Query: 530 SNLTRFTTLELIDLENRITNATNS--ALLIELES--FEILSNAIIEQSESLDNASQVIAI 585 R+TT E L + A ++ A+L +L FE SN + + +D +A Sbjct: 840 R---RYTTAETKGLLKDMQQAEDAKNAVLKDLARRLFEKFSNHYEQWKQCID----CVAN 892 Query: 586 IDISIALAILAKEQNY-CRPIIDNSTN--FI-VKDGRHPIVEKTLKQQSSKPFIANDCDL 641 +D+ +LA A++Q C P + + + FI +++G HP V ++ +I N +L Sbjct: 893 LDVLGSLAEYARQQMVICVPELVSGVDQPFIELQEGYHPCV-------NTLTYIPNGLEL 945 Query: 642 SCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVG 701 K L LLTGPNMGGKST +R+ L+VIMAQ+G+++PA+ + +VD++F+R+G Sbjct: 946 GT---KTEAPLSLLTGPNMGGKSTLMRELGLLVIMAQIGAHIPAASCRLSLVDRIFTRLG 1002 Query: 702 SADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHET 761 + D++ +G STF+VE+ ET+ IL AT S V+LDE+GRGTAT DG +IA + + +L Sbjct: 1003 AQDDILAGHSTFLVELNETSLILKHATCHSLVLLDELGRGTATYDGTAIAASVVNFLANL 1062 Query: 762 NRCRGLLATHFHELTDLSKSLKRF---HNATL-----QVSDSNEGIIFLHKVIPGIADHS 813 +CR L +TH+H L D + +R H A + + E + FL+K G S Sbjct: 1063 -KCRTLFSTHYHNLIDYFHNDQRVTLGHMACMVENEDTTDPTQETVTFLYKYTAGACPKS 1121 Query: 814 YGIQVGKLAGLPNTVISRAYDILKTFEKL 842 YG KLAG+P +I RA+++ K E + Sbjct: 1122 YGFNAAKLAGMPQGIIKRAFELSKKVEAI 1150 >gi|212528164|ref|XP_002144239.1| DNA mismatch repair protein Msh2, putative [Penicillium marneffei ATCC 18224] gi|111380652|gb|ABH09703.1| MSH2-like protein [Penicillium marneffei] gi|210073637|gb|EEA27724.1| DNA mismatch repair protein Msh2, putative [Penicillium marneffei ATCC 18224] Length = 944 Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 229/869 (26%), Positives = 403/869 (46%), Gaps = 114/869 (13%) Query: 35 IKSINPDSLVFYRMGDFYELFFDDALLASRCLGIT---LTKRGKHLGKDIPMCGVPVHTA 91 I NP ++ + GD+Y DA +R + T L G+ +P + V Sbjct: 28 INESNPTTIRLFDRGDWYTAHGTDAEFIARTVYKTTSVLRTLGRSDSGGLPSVTLSVTVF 87 Query: 92 NHYIQK-LIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL--TEDQLL--- 145 +++++ L ++ RI I ES K G ++ +PG L E++L Sbjct: 88 RNFLREALFRLNKRIEIWVSAESGRGQWKLGKQA----------SPGNLQDVEEELGGAG 137 Query: 146 -SPTDSNYLMAVARI--RTEWA----IAWIDISTGIFKIST-------SNHDRLISDIMR 191 S DS ++ ++ R+ A + + D S +S SN + L+ ++ Sbjct: 138 GSAMDSAPIILAVKVSARSSEAKNIGVCFADASVRELGVSEFLDNDVYSNFESLV---IQ 194 Query: 192 IDPREIIF----SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVD 247 + +E + ++K+ A+ +++ +T G +P F E + + Sbjct: 195 LGVKECVIQLDSTKKDAELAKLRAIADTCGVAITERPMADFGTRDIEQDLTRL--LRDER 252 Query: 248 TFGSFSQVE-KTAAAAAISYIKKTQMVNKPT-IGYPE--REDIQSTLFIDSAARSNLEIL 303 + + Q E K A AA + IK +++ T G + + D+ + +D+AA L ++ Sbjct: 253 SAATLPQTELKLAMGAAAALIKYLGVMSDSTNFGQYQLYQHDLSQYMKLDAAALRALNLM 312 Query: 304 -RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILIN 362 G++ SL +++ T G RL A+ + PL D +I R + F+ + L Sbjct: 313 PGPRDGAKNMSLYGLLNHCKTPVGSRLLAQWLKQPLMDQAEIEKRHQLVEAFVVDTELRQ 372 Query: 363 PIQK-ILKSSPDVPRSLSRLKIGRGEPKDI------AVIRDG-IRSGINILNLFLKNDLP 414 +Q+ L++ PD+ R R + + +D+ A+ G +RS N+++ + L Sbjct: 373 TMQEEHLRAIPDLYRLAKRFQRSQANLEDVVRVYQVAIRLPGFVRSFENVMDEQYQTPLD 432 Query: 415 EE----LRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQ 470 ++ LR L KL + +E T+ DL ++ D SL R +R + Sbjct: 433 DQYTTKLRNLSNSLAKLEEMVETTV------DLDALANHEFIIKPEFDDSL---RVIRKK 483 Query: 471 SKRIIASLQLKYAEETKI------KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 ++ + L++ K K L ++++ G+ +T + A ++ +K + Sbjct: 484 LDKLRYDMDLEHRRVAKDLNQDMEKKLFMENHRVHGWCFRLTRNEAGCIR----NKREYQ 539 Query: 525 HRQTMSNLTRFTTLELIDLENRIT------NATNSALLIELESFEILSNAIIEQSESLDN 578 T N FTT + +L N T S L+ E+ + ++EQ Sbjct: 540 ECSTQKNGVYFTTRTMQELRREHDQLSSNYNRTQSGLVQEVVNVATSYCPVLEQ------ 593 Query: 579 ASQVIAIIDISIALAILA--KEQNYCRPIID--NSTNFIVKDGRHPIVEKTLKQQSSKPF 634 + ++A +D+ ++ A ++ Y RP + + N I+K+ RHP +E Q F Sbjct: 594 LAGILAHLDVIVSFAHVSVHAPTAYARPKMHPRGTGNTILKEARHPCME----MQDDISF 649 Query: 635 IANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVD 694 I ND L + ++TGPNMGGKST++RQ +I +MAQ+G +VP + A + I D Sbjct: 650 ITNDVSLV----RGESSFLIITGPNMGGKSTYIRQIGVIALMAQIGCFVPCTEAELTIFD 705 Query: 695 KLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWAT 754 + +RVG++D+ G STFM EM+ET++IL AT++S +I+DE+GRGT+T DG +AWA Sbjct: 706 CILARVGASDSQLKGVSTFMAEMLETSNILKSATSESLIIIDELGRGTSTYDGFGLAWAI 765 Query: 755 IEYLHETNRCRGLLATHFHELTDLS----KSLKRFHNATLQVSDSNEG-------IIFLH 803 E++ C G+ ATHFHELT L+ KS+K H +SD+ EG + L+ Sbjct: 766 SEHIVTEIGCFGMFATHFHELTALADRYPKSVKNLHVVAF-ISDAKEGESNKKREVTLLY 824 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRA 832 +V PG+ D S+GI V +L P V++ A Sbjct: 825 RVEPGVCDQSFGIHVAELVRFPEKVVNMA 853 >gi|254578468|ref|XP_002495220.1| ZYRO0B06160p [Zygosaccharomyces rouxii] gi|238938110|emb|CAR26287.1| ZYRO0B06160p [Zygosaccharomyces rouxii] Length = 957 Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 196/632 (31%), Positives = 307/632 (48%), Gaps = 83/632 (13%) Query: 307 SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQ- 365 +G++ SL + +++ T AG RL E + PLTD +I R +++ I L +Q Sbjct: 327 AGTKVSSLFQLLNHCRTNAGVRLLNEWLKQPLTDVEQIEKRHILVDYLIDQLELRQILQT 386 Query: 366 KILKSSPDVPRSLSRLKIGRGEPKDIAVIRD---GIRSGINILNLFLKND---------- 412 L S DV R +L G +D+ I I ++L+ FL +D Sbjct: 387 DHLPSVLDVRRITKKLN-RNGNLEDVLKIYQFGKKIPEIADLLSSFLDDDQGSAEAKSLV 445 Query: 413 ---LPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGF-----LRDGADASLDET 464 E L E L KL + +E T+ DL +++ GF L +G D+ Sbjct: 446 KSTWLEPLMSHTEPLTKLLEMVETTV------DLDAYEQHNGFMIKVELNEGLANIRDQL 499 Query: 465 RSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKD 521 +L+D+ I S+ L+ AE+ K LK+++++ G+ + +T + A ++L + Sbjct: 500 DALKDE----INSIHLETAEDLGFDPEKKLKLENHHIHGWCMRLTRNDA----RELRNHK 551 Query: 522 RFIHRQTMSNLTRFTTLELIDLENRIT------NATNSALLIELESFEILSNAIIEQSES 575 ++ T+ F+T +L ++ + + SAL+ E+ S + + ++E+ Sbjct: 552 EYLELSTVKAGIYFSTKKLKEIASETAVLQKEYDKQQSALVKEIVSITLTYSPVLEK--- 608 Query: 576 LDNASQVIAIIDI--SIALAILAKEQNYCRPIIDN-----STNFIVKDGRHPIVEKTLKQ 628 S V+A +D+ S A A Y RP + +T + RHP++E Sbjct: 609 ---LSLVLANLDVLCSFAHASSYAPIPYIRPKMHGLETTRTTRLVA--SRHPVLEV---- 659 Query: 629 QSSKPFIANDCDL-SCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASY 687 Q FIAND +L S ND ++TGPNMGGKST++RQ +I +MAQ+G +VP Sbjct: 660 QDDVTFIANDVNLESGVND-----FLIITGPNMGGKSTYIRQVGVISLMAQIGCFVPCEE 714 Query: 688 AHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDG 747 A I +VD + RVG+ D+ G STFMVEM+ETASIL AT S +I+DE+GRGT+T DG Sbjct: 715 ADIAVVDAVLCRVGAGDSQLKGVSTFMVEMLETASILKNATKNSLIIVDELGRGTSTYDG 774 Query: 748 LSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV----------SDSNE 797 +AWA E++ C L ATHFHELT L+ L N +QV + ++ Sbjct: 775 FGLAWAIAEHIASKIGCFALFATHFHELTALADKLPNVKN--MQVVAHLEKDQDGQNESD 832 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 I L+KV PGI+D S+GI V ++ P ++ A E+L H+Q R Sbjct: 833 DITLLYKVEPGISDQSFGIYVAEVVQFPQKIVKMAKRKANELEELKSHDQDSKRAKLSVE 892 Query: 858 QTKESKNNLSKNDKLFVEKIKCLNLDEMSPLT 889 + E L K +V +++ LD+ LT Sbjct: 893 ELNEGNQRLKTLLKDWVNQLRQQGLDDPRKLT 924 >gi|121705444|ref|XP_001270985.1| DNA mismatch repair protein Msh2, putative [Aspergillus clavatus NRRL 1] gi|119399131|gb|EAW09559.1| DNA mismatch repair protein Msh2, putative [Aspergillus clavatus NRRL 1] Length = 940 Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 192/630 (30%), Positives = 310/630 (49%), Gaps = 73/630 (11%) Query: 250 GSFSQVE-KTAAAAAISYIKKTQMVNKPT-IGYPE--REDIQSTLFIDSAARSNLEIL-R 304 G+ Q E K A +A + IK +++ P+ G + + D+ + +D++A L ++ Sbjct: 250 GTLPQTELKLAMGSASALIKYLGVMSDPSNFGQYQLYQHDLSQFMKLDASALRALNLMPG 309 Query: 305 TLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPI 364 GSR SL +++ T G RL A+ + PL D T+I R + F+ N L + Sbjct: 310 PRDGSRTMSLFGLLNHCKTPVGSRLLAQWLKQPLMDLTEIEKRQQLVEAFVTNTELRQTM 369 Query: 365 QK-ILKSSPDVPRSLSRLKIGRGEPKDIA-VIRDGIR------SGINILNLFLKNDLPEE 416 Q+ L+S PD+ R R + + +D+ V + IR S N+++ + L E Sbjct: 370 QEEHLRSIPDLYRLSKRFQRKQANLEDVVRVYQVAIRLPGFVNSLENVMDEQYQTPLEAE 429 Query: 417 ----LRGAVEKLKKLPQSLEKT--LSSMLSDDL---PTFKRDGGFLRDGADASLDETRSL 467 LR + L KL + +E T L+++ + + P F +R LD+ R Sbjct: 430 YTSKLRNYSDSLAKLEEMVETTVDLAALENHEFIIKPEFDDSLRIIR----KKLDKLRHD 485 Query: 468 RDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQ 527 D R +A + ++ K L ++++ G+ +T + A ++ +K + Sbjct: 486 MDVEHRRVA----RDLDQEVDKKLFLENHRVHGWCFRLTRNEAGCIR----NKREYQECS 537 Query: 528 TMSNLTRFTTLELIDLENRIT------NATNSALLIELESFEILSNAIIEQSESLDNASQ 581 T N FTT + L N T + L+ E+ + ++EQ + Sbjct: 538 TQKNGVYFTTSTMQALRREHDQLSSNYNRTQTGLVNEVVNVAASYCPVLEQ------LAG 591 Query: 582 VIAIIDI--SIALAILAKEQNYCRPIID--NSTNFIVKDGRHPIVEKTLKQQSSKPFIAN 637 V+A +D+ S A A + Y RP + + N I+K+ RHP +E Q FI N Sbjct: 592 VLAHLDVIVSFAHASVHAPTAYVRPKMHLRGTGNTILKEARHPCME----MQDDISFITN 647 Query: 638 DCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLF 697 D L ++ ++TGPNMGGKST++RQ +I +MAQ G +VP + A + I D + Sbjct: 648 DVSLI----RDESSFLVITGPNMGGKSTYIRQIGVIALMAQTGCFVPCTEAEMTIFDCIL 703 Query: 698 SRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEY 757 +RVG++D+ G STFM EM+ET++IL AT++S +I+DE+GRGT+T DG +AWA E+ Sbjct: 704 ARVGASDSQLKGVSTFMAEMLETSNILKSATSESLIIIDELGRGTSTYDGFGLAWAISEH 763 Query: 758 LHETNRCRGLLATHFHELTDLS----KSLKRFH-----------NATLQVSDSNEGIIFL 802 + RC GL ATHFHELT L+ KS+K H NA + + + L Sbjct: 764 IVTEIRCFGLFATHFHELTALADRYPKSVKNLHVVAFIGDGADSNADTKANSKKAQVTLL 823 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 ++V PGI D S+GI V +L P V++ A Sbjct: 824 YRVEPGICDQSFGIHVAELVRFPEKVVNMA 853 >gi|70999834|ref|XP_754634.1| DNA mismatch repair protein Msh2 [Aspergillus fumigatus Af293] gi|66852271|gb|EAL92596.1| DNA mismatch repair protein Msh2, putative [Aspergillus fumigatus Af293] gi|159127648|gb|EDP52763.1| DNA mismatch repair protein Msh2, putative [Aspergillus fumigatus A1163] Length = 940 Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 189/621 (30%), Positives = 304/621 (48%), Gaps = 71/621 (11%) Query: 257 KTAAAAAISYIKKTQMVNKPT-IGYPE--REDIQSTLFIDSAARSNLEIL-RTLSGSREQ 312 K A +A + IK ++ P+ G + + D+ + +D++A L ++ GSR Sbjct: 258 KLAMGSASALIKYLGVMADPSNFGQYQLYQHDLSQFMKLDASALRALNLMPGPRDGSRTM 317 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK-ILKSS 371 SL +++ T G RL A+ + PL D +I R + F++N L +Q+ L+S Sbjct: 318 SLFGLLNHCKTPVGSRLLAQWLKQPLMDLAEIEKRQQLVEAFVENTELRQTLQEEHLRSI 377 Query: 372 PDVPRSLSRLKIGRGEPKDI------AVIRDGIRSGI-NILNLFLKNDLPEE----LRGA 420 PD+ R R + + +D+ A+ G S + N+++ + L E LR Sbjct: 378 PDLYRLAKRFQRKQANLEDVVRVYQVAIRLPGFVSSLENVMDEQYQTPLETEYTSKLRSH 437 Query: 421 VEKLKKLPQSLEKT--LSSMLSDDL---PTFKRDGGFLRDGADASLDETRSLRDQSKRII 475 + L KL + +E T L+++ + + P F +R LD+ R D R + Sbjct: 438 SDSLAKLEEMVETTVDLAALENHEFIIKPEFDDSLRIIRK----KLDKLRHDMDVEHRRV 493 Query: 476 ASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRF 535 A K ++ K L ++++ G+ +T + A ++ +K + T N F Sbjct: 494 A----KDLDQEVDKKLFLENHRVHGWCFRLTRNEAGCIR----NKREYQECSTQKNGVYF 545 Query: 536 TTLELIDLENRIT------NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDI- 588 TT + L N T S L+ E+ + ++EQ + V+A +D+ Sbjct: 546 TTSTMQALRREHDQLSSNYNRTQSGLVNEVVNVAASYCPVLEQ------LAGVLAHLDVI 599 Query: 589 -SIALAILAKEQNYCRPIID--NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPN 645 S A A + Y RP + + N I+K+ RHP +E Q FI ND L Sbjct: 600 VSFAHAAVHAPTAYVRPKMHPRGTGNTILKEARHPCME----MQDDISFITNDVSLI--- 652 Query: 646 DKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADN 705 ++ ++TGPNMGGKST++RQ +I +MAQ G +VP S A + I D + +RVG++D+ Sbjct: 653 -RDESSFLIITGPNMGGKSTYIRQIGVIALMAQTGCFVPCSEAELTIFDCILARVGASDS 711 Query: 706 LASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCR 765 G STFM EM+ET++IL AT++S +I+DE+GRGT+T DG +AWA E++ RC Sbjct: 712 QLKGVSTFMAEMLETSNILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIVTEIRCF 771 Query: 766 GLLATHFHELTDLS----KSLKRFHNATLQVSDSNEG----------IIFLHKVIPGIAD 811 GL ATHFHELT L+ KS+K H +N+ + L++V PGI D Sbjct: 772 GLFATHFHELTALADRYPKSVKNLHVVAFIGDGTNDNAGEERPKKQQVTLLYRVEPGICD 831 Query: 812 HSYGIQVGKLAGLPNTVISRA 832 S+GI V +L P V++ A Sbjct: 832 QSFGIHVAELVRFPEKVVNMA 852 >gi|312072119|ref|XP_003138920.1| MutS domain III family protein [Loa loa] gi|307765917|gb|EFO25151.1| MutS domain III family protein [Loa loa] Length = 879 Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 187/601 (31%), Positives = 292/601 (48%), Gaps = 56/601 (9%) Query: 269 KTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE-----QSLLKTIDYSIT 323 K Q+ N + GY ++++SAA LE+ + SL + ++ T Sbjct: 267 KFQLRNYKSAGY---------MYLNSAAVKALELFAACQEDEDLLDDVGSLYELLNKCRT 317 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDVP---RSLS 379 G RL + I PL D KIN RLD + + N + + IL+ PD+ R L Sbjct: 318 PQGQRLLRDWIRRPLHDIRKINERLDVVEALVNNSLCRAILHDDILRRIPDITTITRKLL 377 Query: 380 RLKIGRGEP----------KDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 + K G E K + D + + L + + E L A + +K Sbjct: 378 QKKAGLQECYRLYQIIRLLKRFHQVLDELHASCGSLASSVNDLCLEPLALAQLQFEKFMA 437 Query: 430 SLEKTLSSMLSDDLPTFKRDGGF-LRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 +E T+ D+ FK +G + + D +L D+ + +L LK Sbjct: 438 LIESTV------DVAYFKENGLYRILPNIDENLLAVAERMDEIETKCNAL-LKKVCSGIT 490 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 + +K+++ + G+ VT + +K + D I + + FT +L L Sbjct: 491 EAVKLENTEHHGFHFRVTLKA----EKSIRQSDMRILETSKGSGVHFTCDDLDILNREYL 546 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC--RP-I 605 ++ I+ +++ + S+ +AIID +AL+ILA +C RP I Sbjct: 547 KLSSHYEAIQSSFIDMVVETCSGYVSTFCELSETVAIIDTLVALSILASGSPFCFVRPQI 606 Query: 606 IDNSTNFI-VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWL-LTGPNMGGK 663 +D + ++ RHP++E +S FI ND L ++ G ++L LTG NMGGK Sbjct: 607 LDEDKQILELRKCRHPVMEAN---PNSSQFICNDVILG--REQGDGAMFLVLTGANMGGK 661 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 ST+LR AL V++AQ+GS+VP A ++D + +R+GS D G STFM EM + ASI Sbjct: 662 STYLRCCALSVLLAQIGSFVPCESARFSLIDGIHTRIGSCDYQCKGVSTFMAEMNDCASI 721 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLS---- 779 L AT S VI+DE+GRGT+T DG +AWA E + +C + ATH+HELT LS Sbjct: 722 LESATCHSLVIVDELGRGTSTYDGFGLAWAIAEDIVSRVKCFCIYATHYHELTRLSRVYP 781 Query: 780 KSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF 839 K LK A+ Q+ D N +I L+K+IPG+A S+G+ +GK+ GLPN+V+ A D+L+ Sbjct: 782 KQLKNVCTAS-QI-DENGQLILLYKIIPGVAGRSFGLNIGKMIGLPNSVLQTASDMLERL 839 Query: 840 E 840 E Sbjct: 840 E 840 >gi|302916663|ref|XP_003052142.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256733081|gb|EEU46429.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 1100 Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 233/883 (26%), Positives = 404/883 (45%), Gaps = 100/883 (11%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK---------- 75 TPM Q+++IK + D+++ +G + F +DA +A++ L I GK Sbjct: 198 TPMEIQFLDIKRKHLDTILIVEVGYKFRFFGEDARIAAKELSIVCIP-GKMRYDEHPSEA 256 Query: 76 HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSL-VRRNVVRLV 134 HL + +PVH + ++L+ GH++ + QIE+ K N++ R + L Sbjct: 257 HLDR-FASASIPVHRLPVHAKRLVAAGHKVGVVRQIETAALKKAGDNRNTPFIRKLTNLY 315 Query: 135 TPGT-------LTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSN----HD 183 T GT L + YL+ + + + + GI + + +D Sbjct: 316 TKGTYIDENGELDQGSGSGAPSGGYLLCITETKAKGWGTDEKVDVGILAVQPATGDIIYD 375 Query: 184 RLISDIMRIDPREIIFSEKELSHAEY-------KSLFETLGNVAVAQPNVFFDHSISE-- 234 MR EI +S E+ K + + +++ + NVF D S E Sbjct: 376 NFEDGFMR---SEIETRLLHISPCEFLIVGDLTKGTDKLVQHLSGSSTNVFGDRSRVERV 432 Query: 235 ----SRIADYYNITT---VDTFGSFSQVEKTAA----------------AAAISYIKKTQ 271 + A+ Y+ T D +Q E AA +A I+++++ Sbjct: 433 PRGKTMAAEAYSHVTQFYADKLKENTQDETAAALLDKVLKLPEPVTICLSAMINHLQEYG 492 Query: 272 MVNKPTI-GYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSITGAGGRL 329 + + + Y + +S + I+ +LE+ R + E+ SL +D +IT G RL Sbjct: 493 LEHIFDLTKYFQSFSTRSHMLINGTTLESLEVYRNSTDHSEKGSLFWALDKTITRPGHRL 552 Query: 330 FAERIASPLTDSTKINTRLDSINFFI--QNPILINPIQKILKSSP-DVPRSLSRLKIGRG 386 + + PL D + RL ++ + Q+ + ++ +L ++ D+ RSL R+ G+ Sbjct: 553 LRKWVGRPLLDQELLEGRLAAVEELLEKQSTAPVAQLEALLANAKTDLERSLIRIYYGKC 612 Query: 387 -EPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPT 445 P+ ++V++ + + + +D P + + LPQ L+ +S + +L Sbjct: 613 TRPELVSVLQALQKVASHYSTVKSPSDAPFTSPLLNDAICALPQILDTVISYLEQINLGA 672 Query: 446 FKRDG--GFLRDGADASLDETRSLRDQSKRI------IASLQLKYAEETKIKNLKIKHNN 497 ++D GF RD +T ++D I + + AE+ K K ++ Sbjct: 673 ARKDDKYGFFRDEY-----QTEDMQDHQLGIAHVEHELDGHRAVAAEKIKKKTVEYVTVA 727 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 + Y IEV ++ +K S + L+RF T E++ L + Sbjct: 728 GIEYLIEVPNTD---IKNVPASWSKI---SGTKKLSRFHTPEVLRLITERDQHREALAAA 781 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN---FIV 614 ++F+ L AI + L +A +A +D ++L+ +A + Y RP S++ + Sbjct: 782 CDKAFKDLLAAISADYQPLRDAVSALATLDCLLSLSKVAAQPGYSRPSFLPSSSDPTISI 841 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 +GRH I E TL+ +I L+ P S L+TGPNMGGKS+F+R ALIV Sbjct: 842 TNGRHAIAEHTLEGG----YIPFSTKLAHP----SPLAHLITGPNMGGKSSFVRALALIV 893 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++AQ+GS+VPA + + D + +R G+ DNL +G STFMVE+ ETA IL A +S VI Sbjct: 894 LLAQVGSFVPADALSLTLCDAIHTRTGARDNLFAGESTFMVEVSETARILRSAGPRSLVI 953 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV-- 792 LDE+GRGT+T DG +IA A ++++ RC L TH+ L +++ L N ++ Sbjct: 954 LDELGRGTSTHDGAAIAQAVLQHVVTETRCLTLFITHYQNLARVAEGLDGVKNVHMKFKA 1013 Query: 793 ---SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 +D E + FL++V G+A SYG+ V +LA +P VI A Sbjct: 1014 EKGADGEEEVTFLYEVGEGVAHRSYGLNVARLARIPKKVIEVA 1056 >gi|321461885|gb|EFX72912.1| mismatch repair ATPase Msh2 [Daphnia pulex] Length = 915 Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 254/923 (27%), Positives = 411/923 (44%), Gaps = 131/923 (14%) Query: 42 SLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHY---IQKL 98 +L F+ G+F+ L+ DALLASR T + K LG V +H+ + + Sbjct: 30 TLRFFDRGEFFTLYGQDALLASRDYFKTHSVV-KMLGYGAKKLESVVFNKSHFENFARDV 88 Query: 99 IKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT--EDQLLSPTD--SNYLM 154 + + H C +I + G+KS ++ +PG LT ED + TD S + Sbjct: 89 LLVKH---YCIEIYN-------GSKS--DWSLQYQASPGNLTQVEDLIFGSTDITSQVGI 136 Query: 155 AVARIRTEWAIAWIDISTGIFKI---STSNHD---RLISDIMRIDPREIIFSEKELSHAE 208 +I +E I + T KI S++D L S I+++ P+E++ Sbjct: 137 LAFKIGSENQIGCSYVDTYARKILVAQFSDNDAFSNLESLIVQLSPKEVLIPH------- 189 Query: 209 YKSLFETLGNVAVAQPNVFFDHS--ISESRIADYYNITTVDTFGSF-----SQVEKTAA- 260 G VA + H ++E++ A++ + +V Q E AA Sbjct: 190 --------GEAYVAPKTMLNRHGLLVNENKKAEFSSTESVRLLNRLLRFKKGQQENAAAL 241 Query: 261 ---------AAAISYIKKTQ-MVNKPTIGYPEREDIQSTLF--IDSAARSNLEI------ 302 AA + +K M ++ G ++ T + +DSAA + L + Sbjct: 242 PEVSLDHSMAALAALVKHLDLMADETNFGQYSLQNFDFTQYMRLDSAASAALHLTSYGAE 301 Query: 303 ---LRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPI 359 + T +++ ++ T G RL A+ I PLTD +I+ RLD + F+ + Sbjct: 302 VSTMVTSKAGAPRTIAALLNKCRTSGGQRLLAQWIKQPLTDKNRIDRRLDVVETFVNDVQ 361 Query: 360 LINPI-QKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKND------ 412 L I + L+ PD R +L+ + +D+ + G+ +++ L+N Sbjct: 362 LRQTITEDHLRRMPDYQRLAKKLQKAKANLQDLYKLYLGLSRLPVLVDCLLENQGDHAAV 421 Query: 413 ----LPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLR 468 L + LR A EKL KL + +E T+ DL R ++ D L E + Sbjct: 422 LIGVLIQPLRNANEKLVKLKEMVETTI------DLNQADRGEFIIKADFDDQLGELKKDL 475 Query: 469 DQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIH 525 D + + A + K+ K++K++ N +GY+ VT +K+L + + Sbjct: 476 DDCGSRAEKVLSRAASDLKLETSKSVKLESNAQIGYYFRVTLKD----EKNLRNNRNYHT 531 Query: 526 RQTMSNLTRFTTLELID-----LENRITNATNSALLIELESFEILSNA--IIEQSESLDN 578 T N RF +L L+ R + +++ EILS A +E +SL++ Sbjct: 532 IDTNKNGVRFRNPDLAQVNETYLKVRQDYEQQQSSVVK----EILSVAAGYVEPLQSLND 587 Query: 579 ASQVIAIIDISIALAILAKEQNYCRPII--DNSTNFIVKDGRHPIVEKTLKQQSSKPFIA 636 A + ++ S A+ ++ Y RP I S + + RHP +E Q FI Sbjct: 588 ALSKLDVL-TSFAVCSISAPIPYVRPQILEKGSGSIELIQVRHPCME----LQDGVNFIP 642 Query: 637 NDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKL 696 ND K+ + +++TGPNMGGKST+LR + V+MAQ+G +VPA A I IVD + Sbjct: 643 NDAIFH----KDGHRFYIITGPNMGGKSTYLRSIGVAVLMAQIGCFVPALSATISIVDAI 698 Query: 697 FSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIE 756 +RVG+ D G STFM EMIETA+I AT S VI+DE+GRGT+T DG +AWA E Sbjct: 699 LARVGAGDCHLKGVSTFMAEMIETANITRTATKDSLVIIDELGRGTSTFDGFGLAWAIAE 758 Query: 757 YLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGI 816 ++ + L ATHFHELT L+ + N + + L++V PG D S+G+ Sbjct: 759 HIAVKIQPYALFATHFHELTALADEVPAVDNLHVTALTGDNTFTLLYRVQPGSCDQSFGL 818 Query: 817 QVGKLAGLPNTVISRAYDILKTFEKLY-HHNQKDMRLYYPEIQTKESKNNLSKNDKLF-- 873 V +L P V+ A K E + ++N+ D E K K + ++ D L Sbjct: 819 HVAELVHFPQEVLEIAQKKAKELEAIQPNNNESDS----GEPTMKRRKGDNAEGDTLMRT 874 Query: 874 --------VEKIKCLNLDEMSPL 888 +E+ K +N +EM L Sbjct: 875 YLERAKKIMEQKKDVNCEEMQEL 897 >gi|115396094|ref|XP_001213686.1| DNA mismatch repair protein msh-2 [Aspergillus terreus NIH2624] gi|114193255|gb|EAU34955.1| DNA mismatch repair protein msh-2 [Aspergillus terreus NIH2624] Length = 1349 Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 197/679 (29%), Positives = 328/679 (48%), Gaps = 86/679 (12%) Query: 231 SISESRIADY------YNITTV----DTFGSFSQVE-KTAAAAAISYIKKTQMVNKPT-I 278 +ISE +AD+ ++T + + + Q E K A +A + IK +++ PT Sbjct: 632 AISERPVADFGIKDIEQDLTRLLRAEHSAATLPQTELKLAMGSAAALIKYLGVMSDPTNF 691 Query: 279 GYPE--REDIQSTLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIA 335 G + + D+ + +D++A L ++ GSR SL +++ T G RL A+ + Sbjct: 692 GQYQLYQHDLSQFMKLDASALRALNLMPGPRDGSRSMSLFGLLNHCKTPVGSRLLAQWLK 751 Query: 336 SPLTDSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIA-V 393 PL D +I R + F++N L +Q+ L+S PD+ R R + + +D+ V Sbjct: 752 QPLMDLGEIEKRQQLVEAFVENTELRQTMQEEHLRSIPDLYRLAKRFQRKQANLEDVVRV 811 Query: 394 IRDGIR------SGINILNLFLKNDLPEE----LRGAVEKLKKLPQSLEKTLSSMLSDDL 443 + IR S N+++ + L E LR + L KL + +E T+ DL Sbjct: 812 YQVAIRLPGFVASLENVMDEQYQTPLETEYTSKLRSHSDSLAKLEEMVETTV------DL 865 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI------KNLKIKHNN 497 + ++ D SL R +R + ++ + +++ ++ K L ++++ Sbjct: 866 DALENHEFIIKPEFDESL---RIIRKKLDKLRHDMNVEHRRVSRDLGQEVDKKLFLENHR 922 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT------NAT 551 G+ +T + A ++ E + T N FTT + L N T Sbjct: 923 VHGWCFRLTRNEAGCIRNAKE----YQECSTQKNGVYFTTSTMQTLRREHDQLSSNYNRT 978 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDI--SIALAILAKEQNYCRPIID-- 607 + L+ E+ + ++EQ + V+A +D+ S A A + +Y RP I Sbjct: 979 QTGLVHEVVNVAASYCPVLEQ------LAGVLAHLDVIVSFAHASVHAPSSYVRPKIHPR 1032 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 + N ++K+ RHP +E Q FI ND L ++ ++TGPNMGGKST++ Sbjct: 1033 GTGNTVLKEARHPCME----MQDDISFITNDVSLI----RDESSFLIITGPNMGGKSTYI 1084 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 RQ +I +MAQ G +VP S A + I D + +RVG++D+ G STFM EM+ET++IL A Sbjct: 1085 RQIGVIALMAQTGCFVPCSEAELTIFDCILARVGASDSQLKGVSTFMAEMLETSNILKSA 1144 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLS----KSLK 783 T++S +I+DE+GRGT+T DG +AWA E++ RC GL ATHFHELT L+ KS+K Sbjct: 1145 TSESLIIIDELGRGTSTYDGFGLAWAISEHIVTEIRCFGLFATHFHELTALADRYPKSVK 1204 Query: 784 RFHNATLQVSDSNEG-----------IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 H + D G + L++V PGI D S+GI V +L P+ V++ A Sbjct: 1205 NLHVVAF-IGDGTSGDNEENKSKQNHVTLLYRVEPGICDQSFGIHVAELVRFPDKVVNMA 1263 Query: 833 YDILKTFEKLYHHNQKDMR 851 + E +Q + + Sbjct: 1264 RQKAEELEDFTSADQTEQQ 1282 >gi|291240666|ref|XP_002740239.1| PREDICTED: mutS homolog 2-like [Saccoglossus kowalevskii] Length = 929 Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 178/616 (28%), Positives = 290/616 (47%), Gaps = 62/616 (10%) Query: 251 SFSQVEKTAAAAAISYIKKTQMVNKPTIGYPERE----DIQSTLFIDSAARSNLEILRTL 306 + +++EKT A +++S + K + + + + D+ + +D+AA L +L + Sbjct: 253 ALAEMEKTHAMSSLSALIKYLELLSDESNFGQFQLTTFDLSQYMRLDAAAVRALNLLPST 312 Query: 307 --SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSIN-FFIQNPILINP 363 G++ LL ++ T G RL A+ + PL D KI RL+ + F N + Sbjct: 313 LDGGNKSMCLLGLLNKCRTPQGQRLLAQWVKQPLMDKNKIEERLNIVEAIFEDNELRQTL 372 Query: 364 IQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINIL----------NLFLKNDL 413 + LK PD R + + + +D + + ++L + L Sbjct: 373 LDDQLKRVPDFQRLAKKFQRKKATLQDCYRVYQAVEYMPHLLETLERHGGKHQMLLMEVF 432 Query: 414 PEELRGAVEKLKKLPQSLEKTLSSMLSDD-----LPTFKRDGGFLRDGADASLDETRSLR 468 L+ + K + +E TL + P F D LR+ + DE +S Sbjct: 433 SNPLKEVLMDFSKYQEMVETTLDMKQVEQHEFVIKPDFDPDLQTLREKINDLEDEIKS-- 490 Query: 469 DQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQT 528 Q K+ L + E K+ LK++ N+ LGYF VT V++ + ++I T Sbjct: 491 -QLKKASTDLNV---EANKV--LKLESNSQLGYFFRVTRKEEKVIRNN----RKYITIDT 540 Query: 529 MSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNA--------S 580 N RFT N + N ++ ES+ A++ + S+ + Sbjct: 541 NKNGVRFT--------NSALKSFNEEYMLAKESYNETQKAVVMEIISIAAGYVDPMQLIN 592 Query: 581 QVIAIIDISIALAILAKEQN--YCRPIID--NSTNFIVKDGRHPIVEKTLKQQSSKPFIA 636 +++A +D+ ++ A ++ Y RP + S + RHP +E Q FI Sbjct: 593 EILAQLDVLVSFACVSANAPIPYIRPTLQAKGSGQLKLIQSRHPCLEV----QDEVAFIP 648 Query: 637 NDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKL 696 ND DK ++TGPNMGGKST++RQ ++ +MAQ+G +VP A + IVD + Sbjct: 649 NDVTF----DKEKEMFHIITGPNMGGKSTYIRQIGVVTLMAQIGCFVPCDQAELTIVDCI 704 Query: 697 FSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIE 756 +RVG+ D+ G STFM EM+ETASIL A+ S VI+DE+GRGT+T DG +AWA E Sbjct: 705 LARVGAGDSQLKGVSTFMSEMLETASILRSASECSLVIIDELGRGTSTYDGFGLAWAISE 764 Query: 757 YLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGI 816 Y+ +C L ATHFHELT L+ ++ +N + + + + L+KV PG+ D S+GI Sbjct: 765 YIATKIKCFCLFATHFHELTSLADAVPTVNNLHVSALTTGDTLTLLYKVKPGVCDQSFGI 824 Query: 817 QVGKLAGLPNTVISRA 832 V ++ P VI A Sbjct: 825 HVAEMVHFPQKVIDFA 840 >gi|156061525|ref|XP_001596685.1| hypothetical protein SS1G_02907 [Sclerotinia sclerotiorum 1980] gi|190359849|sp|A7EC69|MSH3_SCLS1 RecName: Full=DNA mismatch repair protein msh3; AltName: Full=MutS protein homolog 3 gi|154700309|gb|EDO00048.1| hypothetical protein SS1G_02907 [Sclerotinia sclerotiorum 1980 UF-70] Length = 1130 Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 257/928 (27%), Positives = 419/928 (45%), Gaps = 173/928 (18%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK-------HLG 78 TPM Q ++IK + D+L+ +G ++ F +DA A++ L I GK HL Sbjct: 211 TPMELQVLDIKRKHMDTLLIVEVGYKFKFFGEDARTAAKVLSIVCIP-GKFRFDEQAHLN 269 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSL-VRRNVVRLVTPG 137 +PVH + ++L+ GH+I I Q E+ K N++ R + + T G Sbjct: 270 Y-FASASIPVHRLPIHAKRLVAAGHKIGIVRQTETAALKKAGDNRNTPFVRKLTNVYTKG 328 Query: 138 TLTED-QLLSPTDS--------NYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISD 188 T +D + L TD+ YL+ + + + + GI + + D + + Sbjct: 329 TYIDDIEGLDSTDAPSGGAPATGYLLCITETKAKGWGTDEKVEVGILAVQPATGDFIYDN 388 Query: 189 -------------IMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDH----- 230 ++ I P E + EL+ A K + G+ NVF D Sbjct: 389 FEDGFMRSEIETRLLHIAPCEFLIV-GELTKATEKLVQHLSGSTT----NVFGDRIRVER 443 Query: 231 --------SISESRIADYYNITTVDTFGSFSQ---------VEKTAAAAAISYIKKTQMV 273 + S SR+A +Y D + +EK I + M+ Sbjct: 444 VEKPKTMAAESYSRVAQFY----ADKLKAHQSSNNAREQELLEKVLRLTEPVTICLSAMI 499 Query: 274 NKPT----------IGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSI 322 T Y + +S + ++ ++LEI + E+ SL T+D + Sbjct: 500 THMTEYGLEHVFDLTKYFQSFSARSHMLLNGNTLTSLEIYTNQTDHTEKGSLFWTLDKTQ 559 Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFF---IQNPIL--INPIQKILKSSPDVPRS 377 T G RL + + PL D ++ R+ ++ + P + +N + ++S D+ RS Sbjct: 560 TRFGQRLLRKWVGRPLLDKQRLEERVAAVEELKDNVNTPKVDKLNATLREVRS--DLERS 617 Query: 378 LSRLKIGRG-EPKDIAVIRDGIRSGINILNLFLKNDLPEE-------LRGAVEKLKKLP- 428 L R+ G+ P+ + V++ R I N F +P + L AV L ++ Sbjct: 618 LLRIYYGKCTRPELLTVLQTMQR----IANEFAHVKIPSDAGFDSVLLNEAVASLPEIGG 673 Query: 429 ---QSLEK-TLSSMLSDDLPTFKRDGGFL-----------RDGADASLDETRSLRDQSKR 473 LEK + DD F FL + G A + + R ++ Sbjct: 674 VVISFLEKINAQAARKDDKYAF-----FLEEYETEEIGEHKCGIGAVEQDLEAHRKEAAS 728 Query: 474 IIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLT 533 K +++T + + I + Y IEV +S LKK S + T SN + Sbjct: 729 -------KLSKKTPVTYVTIA---GIEYLIEVPNSD---LKKVPASWAKI--SGTKSN-S 772 Query: 534 RFTTLELIDL-------ENRITNATNSALLIELESFEILSN-AIIEQSESLDNASQVIAI 585 RF T E+I + +++A ++A L L EI ++ A+I D SQ +A Sbjct: 773 RFHTPEVIKFLRERDQHKESLSSACDTAFLAFLA--EISTHYALIR-----DTISQ-LAT 824 Query: 586 IDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPN 645 +D ++LA +A YC+P ++T V GRHP+VE+ L +I ND LS Sbjct: 825 LDCLLSLAAVASLPGYCKPTFTSTTEISVVGGRHPMVEQLLPST----YIPNDTSLS--T 878 Query: 646 DKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADN 705 D ++ + L+TGPNMGGKS+++RQ ALI I+AQ+GS+VPA A +G++D +++R+G+ D+ Sbjct: 879 DPDNTRALLITGPNMGGKSSYVRQVALISILAQIGSHVPAESARLGLLDGIYTRMGAYDS 938 Query: 706 LASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCR 765 L + +STFMVE+ ETASIL A+ +S VILDE+GRGT+T DG++IA A ++++ +C Sbjct: 939 LFTAQSTFMVELSETASILKSASPRSLVILDELGRGTSTHDGVAIAEAVLDWVVRETKCL 998 Query: 766 GLLATHFHELTDLS------KSLKRFH---------------NATLQVSDSNEGIIFLHK 804 L TH+ L ++ K L+ H NA D NE I FL++ Sbjct: 999 CLFITHYQTLASVARGFEKGKELRNVHMRFTAERNGKQVSNANADKDGEDVNEEITFLYE 1058 Query: 805 VIPGIADHSYGIQVGKLAGLPNTVISRA 832 V G+A SYG+ V +LA +P V+ A Sbjct: 1059 VGEGVAHRSYGLNVARLARVPKAVLDTA 1086 >gi|119491961|ref|XP_001263475.1| DNA mismatch repair protein Msh2, putative [Neosartorya fischeri NRRL 181] gi|119411635|gb|EAW21578.1| DNA mismatch repair protein Msh2, putative [Neosartorya fischeri NRRL 181] Length = 940 Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 187/621 (30%), Positives = 305/621 (49%), Gaps = 71/621 (11%) Query: 257 KTAAAAAISYIKKTQMVNKPT-IGYPE--REDIQSTLFIDSAARSNLEIL-RTLSGSREQ 312 K A +A + IK +++ P+ G + + D+ + +D++A L ++ GSR Sbjct: 258 KLAMGSASALIKYLGVMSDPSNFGQYQLYQHDLSQFMKLDASALRALNLMPGPRDGSRTM 317 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK-ILKSS 371 SL +++ T G RL A+ + PL D +I R + F++N L +Q+ L+S Sbjct: 318 SLFGLLNHCKTPVGSRLLAQWLKQPLMDLAEIEKRQQLVEAFVENTELRQTLQEEHLRSI 377 Query: 372 PDVPRSLSRLKIGRGEPKDI------AVIRDGIRSGI-NILNLFLKNDLPEE----LRGA 420 PD+ R R + + +D+ A+ G S + N+++ + L E LR Sbjct: 378 PDLYRLAKRFQRKQANLEDVVRVYQVAIRLPGFVSSLENVMDEQYQTPLETEYTSKLRSH 437 Query: 421 VEKLKKLPQSLEKT--LSSMLSDDL---PTFKRDGGFLRDGADASLDETRSLRDQSKRII 475 + L KL + +E T L+++ + + P F +R LD+ R D R + Sbjct: 438 SDSLAKLEEMVETTVDLAALENHEFIIKPEFDDSLRIIRK----KLDKLRHDMDVEHRRV 493 Query: 476 ASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRF 535 A K ++ K L ++++ G+ +T + A ++ +K + T N F Sbjct: 494 A----KDLDQEVDKKLFLENHRVHGWCFRLTRNEAGCIR----NKREYQECSTQKNGVYF 545 Query: 536 TTLELIDLENRIT------NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDI- 588 TT + L N T + L+ E+ + ++EQ + V+A +D+ Sbjct: 546 TTSTMQALRREHDQLSSNYNRTQTGLVNEVVNVAASYCPVLEQ------LAGVLAHLDVI 599 Query: 589 -SIALAILAKEQNYCRPIID--NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPN 645 S A A + Y RP + + N ++K+ RHP +E Q FI ND L Sbjct: 600 VSFAHAAVHAPTAYVRPKMHPRGTGNTVLKEARHPCME----MQDDISFITNDVSLI--- 652 Query: 646 DKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADN 705 ++ ++TGPNMGGKST++RQ +I +MAQ G +VP S A + I D + +RVG++D+ Sbjct: 653 -RDESSFLIITGPNMGGKSTYIRQIGVIALMAQTGCFVPCSEAELTIFDCILARVGASDS 711 Query: 706 LASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCR 765 G STFM EM+ET++IL AT++S +I+DE+GRGT+T DG +AWA E++ RC Sbjct: 712 QLKGVSTFMAEMLETSNILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIVTEIRCF 771 Query: 766 GLLATHFHELTDLS----KSLKRFHNATLQVSDSNEG----------IIFLHKVIPGIAD 811 GL ATHFHELT L+ KS+K H +N+ + L++V PGI D Sbjct: 772 GLFATHFHELTALADRYPKSVKNLHVVAFIGDGTNDNAGEEKSKKQQVTLLYRVEPGICD 831 Query: 812 HSYGIQVGKLAGLPNTVISRA 832 S+GI V +L P V++ A Sbjct: 832 QSFGIHVAELVRFPEKVVNMA 852 >gi|157285763|ref|NP_010016.2| Msh3p [Saccharomyces cerevisiae S288c] gi|190358898|sp|P25336|MSH3_YEAST RecName: Full=DNA mismatch repair protein MSH3; AltName: Full=Mismatch-binding protein; Short=MBP; AltName: Full=MutS protein homolog 3 gi|190359865|sp|A6ZTR3|MSH3_YEAS7 RecName: Full=DNA mismatch repair protein MSH3; AltName: Full=Mismatch-binding protein; Short=MBP; AltName: Full=MutS protein homolog 3 gi|285810777|tpg|DAA07561.1| TPA: Msh3p [Saccharomyces cerevisiae S288c] Length = 1018 Score = 230 bits (587), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 236/884 (26%), Positives = 408/884 (46%), Gaps = 104/884 (11%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM-- 83 TP+ +Q ++K + D ++ R+G Y+ F +DA+ SR L I L + + P Sbjct: 133 TPLDKQVKDLKMHHRDKVLVIRVGYKYKCFAEDAVTVSRILHIKLVPGKLTIDESNPQDC 192 Query: 84 -------CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKK---RGNKSLVRRNVVRL 133 C P N ++++L+ ++A+ EQ E+ K S+ R + + Sbjct: 193 NHRQFAYCSFPDVRLNVHLERLVHHNLKVAVVEQAETSAIKKHDPGASKSSVFERKISNV 252 Query: 134 VTPGT--------LTEDQLLSPTDSNYLMAVAR-----IRTEWAIAWIDISTGI-----F 175 T T L ++L D+N + A++R ++++ ++++ G F Sbjct: 253 FTKATFGVNSTFVLRGKRILG--DTNSIWALSRDVHQGKVAKYSLISVNLNNGEVVYDEF 310 Query: 176 KISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISES 235 + ++L I + P E++ + +L K + + Q DH + Sbjct: 311 EEPNLADEKLQIRIKYLQPIEVLVNTDDLPLHVAKFFKDISCPLIHKQEYDLEDHVVQAI 370 Query: 236 RIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSA 295 ++ + + S ++ + + Y Q++ P+I P I + +D Sbjct: 371 KVMN----EKIQLSPSLIRLVSKLYSHMVEY-NNEQVMLIPSIYSPFASKIH--MLLDPN 423 Query: 296 ARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFF- 354 + +L+I G + SL +D++ T G R+ E I PL D +I RLD+I Sbjct: 424 SLQSLDIFTHDGG--KGSLFWLLDHTRTSFGLRMLREWILKPLVDVHQIEERLDAIECIT 481 Query: 355 --IQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKND 412 I N I + ++L +PD+ R+L+R+ G K++ I S ++ + ++ Sbjct: 482 SEINNSIFFESLNQMLNHTPDLLRTLNRIMYGTTSRKEVYFYLKQITSFVDHFKMH-QSY 540 Query: 413 LPEELR---GAVEKLKKLPQSLEKTLSSMLS-DDLPTF---------------KRDGGFL 453 L E + G + K L L L+ +LS LP F K+ F Sbjct: 541 LSEHFKSSDGRIGKQSPLLFRLFSELNELLSTTQLPHFLTMINVSAVMEKNSDKQVMDFF 600 Query: 454 R-------DGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVT 506 +G E+ S+R Q K +A ++ KY +K + + + Y IEV Sbjct: 601 NLNNYDCSEGIIKIQRESESVRSQLKEELAEIR-KY-----LKRPYLNFRDEVDYLIEVK 654 Query: 507 SSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI---ELESFE 563 +S KDL D +I ++RFTT L ++ + LLI EL+ E Sbjct: 655 NSQI----KDL--PDDWIKVNNTKMVSRFTTPRTQKLTQKLEYYKD--LLIRESELQYKE 706 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV-KDGRHPIV 622 L+ E +E L + +A D ++LA + NY RP N I+ K+ R+PI+ Sbjct: 707 FLNKITAEYTE-LRKITLNLAQYDCILSLAATSCNVNYVRPTFVNGQQAIIAKNARNPII 765 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 E ++ ND +S N GK+ ++TGPNMGGKS+++RQ AL+ IMAQ+GS+ Sbjct: 766 ESL-----DVHYVPNDIMMSPEN----GKINIITGPNMGGKSSYIRQVALLTIMAQIGSF 816 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA + I + + +R+G+ D++ +G STF VEM++ IL +S ++LDE+GRGT Sbjct: 817 VPAEEIRLSIFENVLTRIGAHDDIINGDSTFKVEMLDILHILKNCNKRSLLLLDEVGRGT 876 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLL-ATHFHELTDLSKSLKR-FHNATLQVSDSNE--- 797 T DG++I++A I+Y E + C +L THF L ++ L R +H ++ + E Sbjct: 877 GTHDGIAISYALIKYFSELSDCPLILFTTHFPMLGEIKSPLIRNYHMDYVEEQKTGEDWM 936 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 +IFL+K+ G+ +SYG+ V KLA L +I+RA+ I + K Sbjct: 937 SVIFLYKLKKGLTYNSYGMNVAKLARLDKDIINRAFSISEELRK 980 >gi|321263933|ref|XP_003196684.1| DNA mismatch repair protein mutS [Cryptococcus gattii WM276] gi|317463161|gb|ADV24897.1| DNA mismatch repair protein mutS [Cryptococcus gattii WM276] Length = 1071 Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 141/401 (35%), Positives = 224/401 (55%), Gaps = 37/401 (9%) Query: 462 DETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKD 521 DE L+ +++++ SL KY T L I+ N+ Y I++++ A + +K Sbjct: 674 DELNDLKAEAQKLQVSLIKKYDTPT----LTIEKNHRFSYHIQMSAKDAEKV-----AKA 724 Query: 522 RFIHR--QTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNA 579 R + R T F L +L RI + + L N ++EQS+++ + Sbjct: 725 RSLERIGSTTGKTAYFAHGPLAELGTRIEIMIEYLGAAQRRAARELQNMVVEQSDAIQHN 784 Query: 580 SQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDC 639 S+++ +D+S++ A A E N+ +PI+DNST + +GRHP VE +L +S+ F N Sbjct: 785 SELVDELDLSLSFAQNAVEMNWVKPILDNSTELQIINGRHPSVESSL-LSASRNFTPNST 843 Query: 640 DLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSR 699 ++ + L ++TGPN GGKST LRQ A+I I+AQ GS+VPA Y +GIVD++FSR Sbjct: 844 HMT-----SDTHLHVITGPNQGGKSTLLRQTAVIAILAQSGSFVPADYVKMGIVDRVFSR 898 Query: 700 VGSADNLASGRSTFMVEMIE--------TASILNQATNQSFVILDEIGRGTATLDGLSIA 751 VG+ D+L RSTFM+EM++ TA IL AT +S VI+DEIGRGT G+SIA Sbjct: 899 VGARDDLWRDRSTFMLEMVDLLLMGRNRTAGILRHATEKSLVIMDEIGRGTTLQAGVSIA 958 Query: 752 WATIEYLHETNRCRGLLATHFHELTD-LSKSLKRFHNATLQ-----------VSDSNEGI 799 +AT++Y+ + +CR L ATH+HEL L ++KR ++ V ++N Sbjct: 959 YATLDYILKNIKCRTLFATHYHELGQMLGYNIKRAEGEVVKGRSGIAFWCTDVDEANGAF 1018 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 + +K+ PGI +S+ I+ +AG+P + + A L + + Sbjct: 1019 SYSYKLRPGINYNSHAIKAASIAGMPESFLRVAESTLVSLQ 1059 Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 105/449 (23%), Positives = 190/449 (42%), Gaps = 47/449 (10%) Query: 15 QIDLEENLKSSTPMMRQ-YIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKR 73 Q +++ + TP+ + Y+ K PD ++ R+G FYE +F+ A + L ++L ++ Sbjct: 127 QDAIQQGVIPDTPLAHEVYLNWKRF-PDCILLTRVGKFYESYFEPARYLASILSLSLAEK 185 Query: 74 ---GKHLGKDIPMCGVPVHTANHYIQKLIK-IGHRIAICEQIESPLEAKKRGNKSLV--- 126 + P G PV + Y++ L++ +GH + + E+ ++ G K Sbjct: 186 KYGANEAKRSYPFAGFPVPALDKYLKILVQDLGHTVVLVEEYDTDGAVAHTGKKLTAGSG 245 Query: 127 --RRNVVRLVTPGTLTEDQLLSPTDSNYLMAVA-----RIRTEWAIAWIDISTGIFKIST 179 R V R+VTPGT+ ++ ++ S YL+A+A + E ++A+ D STG F Sbjct: 246 PKERRVYRVVTPGTMVDESWMATDQSRYLLAIAIGNQGKNGLELSLAYTDASTGEFFTKD 305 Query: 180 SNHDRLISDIMRIDPREIIF--SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSIS---- 233 + ++ ++ RI PRE++ S EL Y N + + + + Sbjct: 306 TTVAQMEDELARITPREVVLDNSLYELWQNHYNCSEMKFKNASQVEELLALLRLLGVRVS 365 Query: 234 ---ESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTL 290 R Y + T + E+ AAA +++ + P + P ++ + + Sbjct: 366 FADPCRPPPLYTSASSPTLHP-TTPEEYAAALLQHHLQYALRESMPALRRPHKQSSSAFM 424 Query: 291 FIDSAARSNLEILRTLSG----------------SREQSLLKTIDYSITGAGGRLFAERI 334 ID+A LEI S + +LL + +IT +G RL + Sbjct: 425 QIDAATLQALEIRHAFRPGGLIATGETQTNSSPLSAKGTLLSVVSKTITSSGHRLLIRTL 484 Query: 335 ASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVI 394 +P T IN+RL + F+ L ++ LK D+ R + R + RG +DI + Sbjct: 485 TAPSTSPDIINSRLALVQAFVDREDLKTELRHELKEVADIMRIIQRFRSQRGTGRDIWDV 544 Query: 395 RDGIRSGINILNLFLKNDLPEELRGAVEK 423 IR IL + EE+R V + Sbjct: 545 GRWIRGAQKIL-----ETIKEEIRHEVGR 568 >gi|57870611|gb|AAH89046.1| MSH2 protein [Xenopus laevis] Length = 676 Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 186/645 (28%), Positives = 299/645 (46%), Gaps = 83/645 (12%) Query: 285 DIQSTLFIDSAARSNLEILRTLSGSRE-----QSLLKTIDYSITGAGGRLFAERIASPLT 339 D+ + +D+AA L + GS E QSL ++ T G RL + I PL Sbjct: 38 DLSQYMKLDNAAVGALNLF---PGSAEDTSGTQSLAGLLNKCKTPQGQRLVNQWIKQPLM 94 Query: 340 DSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 D ++ RL+ + F+ + L +Q+ +L+ PD+ R + + +D + + Sbjct: 95 DKNRVEERLNLVEAFVMDVELRQCLQEDLLRRFPDLNRLAKKFQRQTANLQDCYRLYQAV 154 Query: 399 RSGINILNLFLKNDLPEELRGAVEKLKKLPQSL-----EKTLSSMLSD------------ 441 N LP ++ A+EK + Q L LS + SD Sbjct: 155 ------------NHLPTVVQ-AIEKYEGTHQMLLLAVFATPLSDLSSDFSKFQEMIETTL 201 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNN 498 D+ + ++ D +L E R D+ ++ + A E + K++K++ N+ Sbjct: 202 DMDQVENHEFLVKASFDPNLTELREKMDELEKNMQGALGGAARELGLDAGKSIKLESNSQ 261 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 +G++ VT L+ N +FTT+++ R TN+ S+L E Sbjct: 262 IGHYFRVTCKEEKALR----------------NNKKFTTIDIQKNGVRFTNSKLSSLSEE 305 Query: 559 L----ESFEILSNAIIEQ--------SESLDNASQVIAIIDISIALAILAKEQN--YCRP 604 E +E NAI+++ + + + VIA +D ++ A ++ Y RP Sbjct: 306 YMRNREEYEEAQNAIVKEIITISAGYVDPIQTLNDVIAQLDAVVSFAHVSNSAPVPYVRP 365 Query: 605 II--DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 +I ++ RHP +E Q FI ND +K ++TGPNMGG Sbjct: 366 VILEKGQGRIVLHSARHPCIE----MQDDVAFIPNDITF----EKEKQMFQIITGPNMGG 417 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ +IV+MAQ+G +VP A + IVD + +RVG+ D+ G STFM EM+ETAS Sbjct: 418 KSTYIRQTGVIVLMAQIGCFVPCDSAQVSIVDCILARVGAGDSQLKGVSTFMAEMLETAS 477 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL AT S +I+DE+GRGT+T DG +AWA EY+ + + ATHFHELT L+ + Sbjct: 478 ILRSATENSLIIIDELGRGTSTYDGFGLAWAISEYISTKIKAFCMFATHFHELTALADQV 537 Query: 783 KRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKL 842 +N + + + + L+++ G+ D S+GI V +LA P VI A + E+ Sbjct: 538 PTVNNLHVTALTTEDTLTMLYRIKKGVCDQSFGIHVAELANFPKHVIETAKEKALELEEF 597 Query: 843 -YHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMS 886 Y N D + E K K + F+ ++K L L EMS Sbjct: 598 QYVGNPDDCDDEPARKRRCEEKEEGEKIIQDFLSRVKALPLTEMS 642 >gi|4804|emb|CAA46116.1| ORF YCR1152 [Saccharomyces cerevisiae] gi|172004|gb|AAA34803.1| MSH3 protein [Saccharomyces cerevisiae] gi|1907230|emb|CAA42247.1| DNA mismatch repair protein [Saccharomyces cerevisiae] gi|151943902|gb|EDN62202.1| MutS-like protein [Saccharomyces cerevisiae YJM789] Length = 1047 Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 236/884 (26%), Positives = 408/884 (46%), Gaps = 104/884 (11%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM-- 83 TP+ +Q ++K + D ++ R+G Y+ F +DA+ SR L I L + + P Sbjct: 162 TPLDKQVKDLKMHHRDKVLVIRVGYKYKCFAEDAVTVSRILHIKLVPGKLTIDESNPQDC 221 Query: 84 -------CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKK---RGNKSLVRRNVVRL 133 C P N ++++L+ ++A+ EQ E+ K S+ R + + Sbjct: 222 NHRQFAYCSFPDVRLNVHLERLVHHNLKVAVVEQAETSAIKKHDPGASKSSVFERKISNV 281 Query: 134 VTPGT--------LTEDQLLSPTDSNYLMAVAR-----IRTEWAIAWIDISTGI-----F 175 T T L ++L D+N + A++R ++++ ++++ G F Sbjct: 282 FTKATFGVNSTFVLRGKRILG--DTNSIWALSRDVHQGKVAKYSLISVNLNNGEVVYDEF 339 Query: 176 KISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISES 235 + ++L I + P E++ + +L K + + Q DH + Sbjct: 340 EEPNLADEKLQIRIKYLQPIEVLVNTDDLPLHVAKFFKDISCPLIHKQEYDLEDHVVQAI 399 Query: 236 RIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSA 295 ++ + + S ++ + + Y Q++ P+I P I + +D Sbjct: 400 KVMN----EKIQLSPSLIRLVSKLYSHMVEY-NNEQVMLIPSIYSPFASKIH--MLLDPN 452 Query: 296 ARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFF- 354 + +L+I G + SL +D++ T G R+ E I PL D +I RLD+I Sbjct: 453 SLQSLDIFTHDGG--KGSLFWLLDHTRTSFGLRMLREWILKPLVDVHQIEERLDAIECIT 510 Query: 355 --IQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKND 412 I N I + ++L +PD+ R+L+R+ G K++ I S ++ + ++ Sbjct: 511 SEINNSIFFESLNQMLNHTPDLLRTLNRIMYGTTSRKEVYFYLKQITSFVDHFKMH-QSY 569 Query: 413 LPEELR---GAVEKLKKLPQSLEKTLSSMLS-DDLPTF---------------KRDGGFL 453 L E + G + K L L L+ +LS LP F K+ F Sbjct: 570 LSEHFKSSDGRIGKQSPLLFRLFSELNELLSTTQLPHFLTMINVSAVMEKNSDKQVMDFF 629 Query: 454 R-------DGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVT 506 +G E+ S+R Q K +A ++ KY +K + + + Y IEV Sbjct: 630 NLNNYDCSEGIIKIQRESESVRSQLKEELAEIR-KY-----LKRPYLNFRDEVDYLIEVK 683 Query: 507 SSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI---ELESFE 563 +S KDL D +I ++RFTT L ++ + LLI EL+ E Sbjct: 684 NSQI----KDL--PDDWIKVNNTKMVSRFTTPRTQKLTQKLEYYKD--LLIRESELQYKE 735 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV-KDGRHPIV 622 L+ E +E L + +A D ++LA + NY RP N I+ K+ R+PI+ Sbjct: 736 FLNKITAEYTE-LRKITLNLAQYDCILSLAATSCNVNYVRPTFVNGQQAIIAKNARNPII 794 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 E ++ ND +S N GK+ ++TGPNMGGKS+++RQ AL+ IMAQ+GS+ Sbjct: 795 ESL-----DVHYVPNDIMMSPEN----GKINIITGPNMGGKSSYIRQVALLTIMAQIGSF 845 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA + I + + +R+G+ D++ +G STF VEM++ IL +S ++LDE+GRGT Sbjct: 846 VPAEEIRLSIFENVLTRIGAHDDIINGDSTFKVEMLDILHILKNCNKRSLLLLDEVGRGT 905 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLL-ATHFHELTDLSKSLKR-FHNATLQVSDSNE--- 797 T DG++I++A I+Y E + C +L THF L ++ L R +H ++ + E Sbjct: 906 GTHDGIAISYALIKYFSELSDCPLILFTTHFPMLGEIKSPLIRNYHMDYVEEQKTGEDWM 965 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 +IFL+K+ G+ +SYG+ V KLA L +I+RA+ I + K Sbjct: 966 SVIFLYKLKKGLTYNSYGMNVAKLARLDKDIINRAFSISEELRK 1009 >gi|207347221|gb|EDZ73472.1| YCR092Cp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 1047 Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 246/926 (26%), Positives = 428/926 (46%), Gaps = 110/926 (11%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM-- 83 TP+ +Q ++K + D ++ R+G Y+ F +DA+ SR L I L + + P Sbjct: 162 TPLDKQVKDLKMHHRDKVLVIRVGYKYKCFAEDAVTVSRILHIKLVPGKLTIDESSPQDC 221 Query: 84 -------CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKK---RGNKSLVRRNVVRL 133 C P N ++++L+ ++A+ EQ E+ K S+ R + + Sbjct: 222 NHRQFAYCSFPDVRLNVHLERLVHHNLKVAVVEQAETSAIKKHDPGASKSSVFERKISNV 281 Query: 134 VTPGT--------LTEDQLLSPTDSNYLMAVAR-----IRTEWAIAWIDISTGI-----F 175 T T L ++L D+N + A++R ++++ ++++ G F Sbjct: 282 FTKATFGVNSTFVLRGKRILG--DTNSIWALSRDVHQGKVAKYSLISVNLNNGEVVYDEF 339 Query: 176 KISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISES 235 + ++L I + P E++ + +L K + + Q DH + Sbjct: 340 EEPNLADEKLQIRIKYLQPIEVLVNTDDLPLHVAKFFKDISCPLIHKQEYDLEDHVVQAI 399 Query: 236 RIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSA 295 ++ + + S ++ + + Y Q++ P+I P I + +D Sbjct: 400 KVMN----EKIQLSPSLIRLVSKLYSHMVEY-NNEQVMLIPSIYSPFASKIH--MLLDPN 452 Query: 296 ARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFF- 354 + +L+I G + SL +D++ T G R+ E I PL D +I RLD+I Sbjct: 453 SLQSLDIFTHDGG--KGSLFWLLDHTRTSFGLRMLREWILKPLVDVHQIEERLDAIECIT 510 Query: 355 --IQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKND 412 I N I + ++L +PD+ R+L+R+ G K++ I S ++ + ++ Sbjct: 511 SEINNSIFFESLNQMLNHTPDLLRTLNRIMYGTTSRKEVYFYLKQITSFVDHFKMH-QSY 569 Query: 413 LPEELR---GAVEKLKKLPQSLEKTLSSMLSDD-LPTF---------------KRDGGFL 453 L E + G + K L L L+ +LS LP F K+ F Sbjct: 570 LSEHFKSSDGRIGKQSPLLFRLFSELNELLSTTRLPHFLTMINVSAVMEKNSDKQVMDFF 629 Query: 454 R-------DGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVT 506 +G E+ S+R Q K +A ++ KY +K + + + Y IEV Sbjct: 630 NLNNYDCSEGIIKIQRESESVRSQLKEELAEIR-KY-----LKRPYLNFRDEVDYLIEVK 683 Query: 507 SSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI---ELESFE 563 +S KDL D +I ++RFTT L ++ + LLI EL+ E Sbjct: 684 NSQI----KDL--PDDWIKVNNTKMVSRFTTPRTQKLTQKLEYYKD--LLIRESELQYKE 735 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV-KDGRHPIV 622 L+ E +E L + +A D ++LA + NY RP N I+ K+ R+PI+ Sbjct: 736 FLNKITAEYTE-LRKITLNLAQYDCILSLAATSCNVNYVRPTFVNGQQAIIAKNARNPII 794 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 E ++ ND +S N GK+ ++TGPNMGGKS+++RQ AL+ IMAQ+GS+ Sbjct: 795 ESL-----DVHYVPNDIMMSPEN----GKINIITGPNMGGKSSYIRQVALLTIMAQIGSF 845 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA + I + + +R+G+ D++ +G STF VEM++ IL +S ++LDE+GRGT Sbjct: 846 VPAEEIRLSIFENVLTRIGAHDDIINGDSTFKVEMLDILHILKNCNKRSLLLLDEVGRGT 905 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLL-ATHFHELTDLSKSLKR-FHNATLQVSDSNE--- 797 T DG++I++A I+Y E + C +L THF L ++ L R +H ++ + E Sbjct: 906 GTHDGIAISYALIKYFSELSDCPLILFTTHFPMLGEIKSPLIRNYHMDYVEEQKTGEDWM 965 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEI 857 +IFL+K+ G+ +SYG+ V KLA L +I+RA+ I + K N+ ++L + + Sbjct: 966 SVIFLYKLKKGLTYNSYGMNVAKLARLDKDIINRAFSISEELRK-ESINEDALKL-FSSL 1023 Query: 858 QTKESKNNLSKNDKLFVEKIKCLNLD 883 + +N++ DKL K L+LD Sbjct: 1024 KRILKSDNITATDKL----AKLLSLD 1045 >gi|190406508|gb|EDV09775.1| Mismatch repair protein [Saccharomyces cerevisiae RM11-1a] Length = 1047 Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 237/884 (26%), Positives = 410/884 (46%), Gaps = 104/884 (11%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM-- 83 TP+ +Q ++K + D ++ R+G Y+ F +DA+ SR L I L + + P Sbjct: 162 TPLDKQVKDLKMHHRDKVLVIRVGYKYKCFAEDAVTVSRILHIKLVPGKLTIDESNPQDC 221 Query: 84 -------CGVPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRG--NKSLVRRNVVRL 133 C P N ++++L+ ++A+ EQ E S ++ G S+ R + + Sbjct: 222 NHRQFAYCSFPDVRLNVHLERLVHHNLKVAVVEQAETSAIKKHDPGASKSSVFERKISNV 281 Query: 134 VTPGT--------LTEDQLLSPTDSNYLMAVAR-----IRTEWAIAWIDISTGI-----F 175 T T L ++L D+N + A++R ++++ ++++ G F Sbjct: 282 FTKATFGVNSTFVLRGKRILG--DTNSIWALSRDVHQGKVAKYSLISVNLNNGEVVYDEF 339 Query: 176 KISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISES 235 + ++L I + P E++ + +L K + + Q DH + Sbjct: 340 EEPNLADEKLQIRIKYLQPIEVLVNTDDLPLHVTKFFKDISCPLIHKQEYDLEDHVVQAI 399 Query: 236 RIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSA 295 ++ + + S ++ + + Y Q++ P+I P I + +D Sbjct: 400 KVMN----EKIQLSPSLIRLVSKLYSHMVEY-NNEQVMLIPSIYSPFASKIH--MLLDPN 452 Query: 296 ARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFF- 354 + +L+I G + SL +D++ T G R+ E I PL D +I RLD+I Sbjct: 453 SLQSLDIFTHDGG--KGSLFWLLDHTRTSFGLRMLREWILKPLVDVHQIEERLDAIECIT 510 Query: 355 --IQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKND 412 I N I + ++L +PD+ R+L+R+ G K++ I S ++ + ++ Sbjct: 511 SEINNSIFFESLNQMLNHTPDLLRTLNRIMYGTTSRKEVYFYLKQITSFVDHFKMH-QSY 569 Query: 413 LPEELR---GAVEKLKKLPQSLEKTLSSMLS-DDLPTF---------------KRDGGFL 453 L E + G + K L L L+ +LS LP F K+ F Sbjct: 570 LSEHFKSSDGRIGKQSPLLFRLFSELNELLSTTQLPHFLTMINVSAVMEKNSDKQVMDFF 629 Query: 454 R-------DGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVT 506 +G E+ S+R Q K +A ++ KY +K + + + Y IEV Sbjct: 630 NLNNYDCSEGIIKIQRESESVRSQLKEELAEIR-KY-----LKRPYLNFRDEVDYLIEVK 683 Query: 507 SSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI---ELESFE 563 +S KDL D +I ++RFTT L ++ + LLI EL+ E Sbjct: 684 NSQI----KDL--PDDWIKVNNTKMVSRFTTPRTQKLTQKLEYYKD--LLIRESELQYKE 735 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV-KDGRHPIV 622 L+ E +E L + +A D ++LA + NY RP N I+ K+ R+PI+ Sbjct: 736 FLNKITAEYTE-LRKITLNLAQYDCILSLAATSCNVNYVRPTFVNGQQAIIAKNARNPII 794 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 E ++ ND +S N GK+ ++TGPNMGGKS+++RQ AL+ IMAQ+GS+ Sbjct: 795 ESL-----DVHYVPNDIMMSPEN----GKINIITGPNMGGKSSYIRQVALLTIMAQIGSF 845 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA + I + + +R+G+ D++ +G STF VEM++ IL +S ++LDE+GRGT Sbjct: 846 VPAEEIRLSIFENVLTRIGAHDDIINGDSTFKVEMLDILHILKNCNKRSLLLLDEVGRGT 905 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLL-ATHFHELTDLSKSLKR-FHNATLQVSDSNE--- 797 T DG++I++A I+Y E + C +L THF L ++ L R +H ++ + E Sbjct: 906 GTHDGIAISYALIKYFSELSDCPLILFTTHFPMLGEIKSPLIRNYHMDYVEEQKTGEDWM 965 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 +IFL+K+ G+ +SYG+ V KLA L +I+RA+ I + K Sbjct: 966 SVIFLYKLKKGLTYNSYGMNVAKLARLDKDIINRAFSISEELRK 1009 >gi|256270184|gb|EEU05408.1| Msh3p [Saccharomyces cerevisiae JAY291] Length = 1018 Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 236/884 (26%), Positives = 408/884 (46%), Gaps = 104/884 (11%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM-- 83 TP+ +Q ++K + D ++ R+G Y+ F +DA+ SR L I L + + P Sbjct: 133 TPLDKQVKDLKMHHRDKVLVIRVGYKYKCFAEDAVTVSRILHIKLVPGKLTIDESNPQDC 192 Query: 84 -------CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKK---RGNKSLVRRNVVRL 133 C P N ++++L+ ++A+ EQ E+ K S+ R + + Sbjct: 193 SHRQFAYCSFPDVRLNVHLERLVHHNLKVAVVEQAETSAIKKHDPGASKSSVFERKISNV 252 Query: 134 VTPGT--------LTEDQLLSPTDSNYLMAVAR-----IRTEWAIAWIDISTGI-----F 175 T T L ++L D+N + A++R ++++ ++++ G F Sbjct: 253 FTKATFGVNSTFVLRGKRILG--DTNSIWALSRDVHQGKVAKYSLISVNLNNGEVVYDEF 310 Query: 176 KISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISES 235 + ++L I + P E++ + +L K + + Q DH + Sbjct: 311 EEPNLADEKLQIRIKYLQPIEVLVNTDDLPLHVAKFFKDISCPLIHKQEYDLEDHVVQAI 370 Query: 236 RIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSA 295 ++ + + S ++ + + Y Q++ P+I P I + +D Sbjct: 371 KVMN----EKIQLSPSLIRLVSKLYSHMVEY-NNEQVMLIPSIYSPFASKIH--MLLDPN 423 Query: 296 ARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFF- 354 + +L+I G + SL +D++ T G R+ E I PL D +I RLD+I Sbjct: 424 SLQSLDIFTHDGG--KGSLFWLLDHTRTSFGFRMLREWILKPLIDVHQIEERLDAIECIT 481 Query: 355 --IQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKND 412 I N I + ++L +PD+ R+L+R+ G K++ I S ++ + ++ Sbjct: 482 SEINNSIFFESLNQMLNHTPDLLRTLNRIMYGTTSRKEVYFYLKQITSFVDHFKMH-QSY 540 Query: 413 LPEELR---GAVEKLKKLPQSLEKTLSSMLSDD-LPTF---------------KRDGGFL 453 L E + G + K L L L+ +LS LP F K+ F Sbjct: 541 LSEHFKSSDGRIGKQSPLLFRLFSELNELLSTTRLPHFLTMINVSAVMEKNSDKQVMDFF 600 Query: 454 R-------DGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVT 506 +G E+ S+R Q K +A ++ KY +K + + + Y IEV Sbjct: 601 NLNNYDCSEGIIKIQRESESVRSQLKEELAEIR-KY-----LKRPYLNFRDEVDYLIEVK 654 Query: 507 SSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI---ELESFE 563 +S KDL D +I ++RFTT L ++ + LLI EL+ E Sbjct: 655 NSQI----KDL--PDDWIKVNNTKMVSRFTTPRTQKLTQKLEYYKD--LLIRESELQYKE 706 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV-KDGRHPIV 622 L+ E +E L + +A D ++LA + NY RP N I+ K+ R+PI+ Sbjct: 707 FLNKITAEYTE-LRKITLNLAQYDCILSLAATSCNVNYVRPTFVNGQQAIIAKNARNPII 765 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 E ++ ND +S N GK+ ++TGPNMGGKS+++RQ AL+ IMAQ+GS+ Sbjct: 766 ESL-----DVHYVPNDIMMSPEN----GKINIITGPNMGGKSSYIRQVALLTIMAQIGSF 816 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA + I + + +R+G+ D++ +G STF VEM++ IL +S ++LDE+GRGT Sbjct: 817 VPAEEIRLSIFENVLTRIGAHDDIINGDSTFKVEMLDILHILKNCNKRSLLLLDEVGRGT 876 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLL-ATHFHELTDLSKSLKR-FHNATLQVSDSNE--- 797 T DG++I++A I+Y E + C +L THF L ++ L R +H ++ + E Sbjct: 877 GTHDGIAISYALIKYFSELSDCPLILFTTHFPMLGEIKSPLIRNYHMDYVEEQKTGEDWM 936 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 +IFL+K+ G+ +SYG+ V KLA L +I+RA+ I + K Sbjct: 937 SVIFLYKLKKGLTYNSYGMNVAKLARLDKDIINRAFSISEELRK 980 >gi|225455848|ref|XP_002275304.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 908 Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 172/585 (29%), Positives = 288/585 (49%), Gaps = 51/585 (8%) Query: 282 EREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT-GAGGRLFAERIASPLT 339 +R ++ S + +DSAA L +L + + + + SL ++ + T G G RL + PL Sbjct: 252 QRYNLDSYMRLDSAAVRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLV 311 Query: 340 DSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG-- 397 D +IN R D + F+++ L +++ LK D+ R L L+ R + + + Sbjct: 312 DVNEINCRQDLVQAFVEDTALRQDLRQHLKRISDIERLLRTLEKRRASLQHVVKLYQSSI 371 Query: 398 ----IRSGINILNLFLKNDLPEELRGAVEK------LKKLPQSLEKTLSSMLSDDLPTFK 447 I+S + + + + E+ +E L + +E + DL + Sbjct: 372 RLPYIKSALGQYDGQFSSLIKEKYLDPLESWTDDDHLNRFIGLVEAAV------DLNELE 425 Query: 448 RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIE 504 + G DA L ++ ++ + I +L + A + + K+LK++ G+ Sbjct: 426 NGEYMISSGYDAKLASLKNDQETLELQIHNLHKQTAIDLDLPMDKSLKLEKGTQFGHVFR 485 Query: 505 VTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEI 564 +T ++K L +K FI +T + +FT +L L ++ + + E Sbjct: 486 ITKKEEPKIRKKLTAK--FIVLETRKDGVKFTNTKLKKLGDQYQKILDEYKDCQRELVVR 543 Query: 565 LSNAIIEQSESLDNASQVIAIIDISIALAILAKEQ--NYCRPIIDNS--TNFIVKDGRHP 620 + SE +N +++++ +D+ ++ A LA Y RP I S + I++ RHP Sbjct: 544 VVQTAATFSEVFENLARLLSELDVLLSFADLATSSPTAYTRPEISPSHMGDIILEGSRHP 603 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 VE Q FI NDC L + ++TGPNMGGKSTF+RQ + ++MAQ+G Sbjct: 604 CVEA----QDWVNFIPNDCKLV----REKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG 655 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VP A+I + D +F+RVG+ D G STFM EM+ETASIL AT++S +I+DE+GR Sbjct: 656 SFVPCDKANISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGR 715 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK-------------SLKRFHN 787 GT+T DG +AWA E++ E + L ATHFHELT L+ + +H Sbjct: 716 GTSTYDGFGLAWAICEHIVEVIKAPTLFATHFHELTALAHENTDHQPPEKQIVGVANYH- 774 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 + + S+ + L+KV PG D S+GI V + A P +V++ A Sbjct: 775 VSAHIDSSSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLA 819 >gi|154278353|ref|XP_001539990.1| DNA mismatch repair protein msh-2 [Ajellomyces capsulatus NAm1] gi|150413575|gb|EDN08958.1| DNA mismatch repair protein msh-2 [Ajellomyces capsulatus NAm1] Length = 1015 Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 185/623 (29%), Positives = 300/623 (48%), Gaps = 81/623 (13%) Query: 259 AAAAAISYIKKTQMVNKPTIGYPE--REDIQSTLFIDSAARSNLEIL-RTLSGSREQSLL 315 AAAA I Y+ M + G + D+ + +D+AA L ++ G++ SL Sbjct: 336 AAAALIKYLGA--MSDATNFGQYRLYQHDLSQYMKLDAAALRALNLMPGPRDGAKNMSLY 393 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDV 374 +++ T G RL A+ + PL + I R + F+ + L +Q+ L+S PD+ Sbjct: 394 GLLNHCKTPVGSRLLAQWLKQPLMNHEDIEKRQQLVEAFVVDTELRQTMQEDHLRSIPDL 453 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL-----FLKNDLPEELRGAVE-----KL 424 R R + +D+A + D +R ++ L L+N + E+ +G +E KL Sbjct: 454 YRLAKRFQ------RDMANLEDVVRVYQVVIRLPGFINTLENVMDEQYQGPLETEYTTKL 507 Query: 425 KKLPQSLEKTLSSMLSD--DLPTFKRDGGFLRDGADASL-------DETRSLRDQSKRII 475 + + + K L+ M+ DL ++ D SL D + D +I+ Sbjct: 508 RNISDNFSK-LAEMVETTVDLDALDNHEFIIKPEFDDSLRIIKKKLDRLKHDMDTEHKIV 566 Query: 476 ASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRF 535 + + K L ++++ G+ +T + AS ++ +K + T N F Sbjct: 567 G----RDLNQDTDKKLFLENHRVHGWCFRLTRNEASCIR----NKREYQECSTQKNGVYF 618 Query: 536 TTLELIDLENRIT------NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDIS 589 TT ++ L N T + L+ E+ + ++EQ S V+A +D+ Sbjct: 619 TTSTMLSLRREHDQLSSNYNRTQTGLVQEVVNVAASYCPLLEQLAS------VLAHLDVI 672 Query: 590 IALAILA--KEQNYCRPIID--NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPN 645 ++ A ++ Y RP I + N ++K+ RHP +E Q FI ND L Sbjct: 673 VSFAHVSVHAPTAYVRPKIHPRGTGNTVLKEARHPCME----MQDDISFITNDVSLL--- 725 Query: 646 DKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADN 705 +N ++TGPNMGGKST++RQ +I +MAQ G +VP S A + I D + +RVG++D+ Sbjct: 726 -RNESSFLIITGPNMGGKSTYIRQIGVIALMAQTGCFVPCSEAELTIFDSILARVGASDS 784 Query: 706 LASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCR 765 G STFM EM+ETA+IL AT++S +I+DE+GRGT+T DG +AWA E++ RC Sbjct: 785 QLKGVSTFMAEMLETANILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIVTEIRCF 844 Query: 766 GLLATHFHELTDLS----KSLKRFHNATLQVSDSNEG------------IIFLHKVIPGI 809 L ATHFHELT L S+K H ++D EG + L++V PG+ Sbjct: 845 ALFATHFHELTALQDRYPNSVKNLHVVAF-INDGTEGKQNSSTDKKKREVTLLYRVEPGV 903 Query: 810 ADHSYGIQVGKLAGLPNTVISRA 832 D S+GI V +L P V++ A Sbjct: 904 CDQSFGIHVAELVRFPEKVVNMA 926 >gi|297734165|emb|CBI15412.3| unnamed protein product [Vitis vinifera] Length = 945 Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 172/585 (29%), Positives = 288/585 (49%), Gaps = 51/585 (8%) Query: 282 EREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT-GAGGRLFAERIASPLT 339 +R ++ S + +DSAA L +L + + + + SL ++ + T G G RL + PL Sbjct: 286 QRYNLDSYMRLDSAAVRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLV 345 Query: 340 DSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDG-- 397 D +IN R D + F+++ L +++ LK D+ R L L+ R + + + Sbjct: 346 DVNEINCRQDLVQAFVEDTALRQDLRQHLKRISDIERLLRTLEKRRASLQHVVKLYQSSI 405 Query: 398 ----IRSGINILNLFLKNDLPEELRGAVEK------LKKLPQSLEKTLSSMLSDDLPTFK 447 I+S + + + + E+ +E L + +E + DL + Sbjct: 406 RLPYIKSALGQYDGQFSSLIKEKYLDPLESWTDDDHLNRFIGLVEAAV------DLNELE 459 Query: 448 RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIE 504 + G DA L ++ ++ + I +L + A + + K+LK++ G+ Sbjct: 460 NGEYMISSGYDAKLASLKNDQETLELQIHNLHKQTAIDLDLPMDKSLKLEKGTQFGHVFR 519 Query: 505 VTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEI 564 +T ++K L +K FI +T + +FT +L L ++ + + E Sbjct: 520 ITKKEEPKIRKKLTAK--FIVLETRKDGVKFTNTKLKKLGDQYQKILDEYKDCQRELVVR 577 Query: 565 LSNAIIEQSESLDNASQVIAIIDISIALAILAKEQ--NYCRPIIDNS--TNFIVKDGRHP 620 + SE +N +++++ +D+ ++ A LA Y RP I S + I++ RHP Sbjct: 578 VVQTAATFSEVFENLARLLSELDVLLSFADLATSSPTAYTRPEISPSHMGDIILEGSRHP 637 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 VE Q FI NDC L + ++TGPNMGGKSTF+RQ + ++MAQ+G Sbjct: 638 CVEA----QDWVNFIPNDCKLV----REKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG 689 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 S+VP A+I + D +F+RVG+ D G STFM EM+ETASIL AT++S +I+DE+GR Sbjct: 690 SFVPCDKANISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGR 749 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK-------------SLKRFHN 787 GT+T DG +AWA E++ E + L ATHFHELT L+ + +H Sbjct: 750 GTSTYDGFGLAWAICEHIVEVIKAPTLFATHFHELTALAHENTDHQPPEKQIVGVANYH- 808 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 + + S+ + L+KV PG D S+GI V + A P +V++ A Sbjct: 809 VSAHIDSSSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLA 853 >gi|225560675|gb|EEH08956.1| DNA mismatch repair protein msh-2 [Ajellomyces capsulatus G186AR] Length = 941 Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 185/623 (29%), Positives = 301/623 (48%), Gaps = 81/623 (13%) Query: 259 AAAAAISYIKKTQMVNKPTIGYPE--REDIQSTLFIDSAARSNLEIL-RTLSGSREQSLL 315 AAAA I Y+ M + G + D+ + +D+AA L ++ G++ SL Sbjct: 262 AAAALIKYLGA--MSDATNFGQYRLYQHDLSQYMKLDAAALRALNLMPGPRDGAKNMSLY 319 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDV 374 +++ T G RL A+ + PL + I R + F+ + L +Q+ L+S PD+ Sbjct: 320 GLLNHCKTPVGSRLLAQWLKQPLMNHEDIEKRQQLVEAFVVDTELRQTMQEDHLRSIPDL 379 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL-----FLKNDLPEELRGAVE-----KL 424 R R + +D+A + D +R ++ L L+N + E+ +G +E KL Sbjct: 380 YRLAKRFQ------RDMANLEDVVRVYQVVIRLPGFINTLENVMDEQYQGPLETEYTTKL 433 Query: 425 KKLPQSLEKTLSSMLSD--DLPTFKRDGGFLRDGADASL-------DETRSLRDQSKRII 475 + + + K L+ M+ DL ++ D SL D + D +I+ Sbjct: 434 RNISDNFSK-LAEMVETTVDLDALDNHEFIIKPEFDDSLRIIKKKLDRLKHDMDTEHKIV 492 Query: 476 ASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRF 535 + + K L ++++ G+ +T + AS ++ +K + T N F Sbjct: 493 G----RDLNQDTDKKLFLENHRVHGWCFRLTRNEASCIR----NKREYQECSTQKNGVYF 544 Query: 536 TTLELIDLENRIT------NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDIS 589 TT ++ L N T + L+ E+ + ++EQ S V+A +D+ Sbjct: 545 TTSTMLSLRREHDQLSSNYNRTQTGLVQEVVNVAASYCPLLEQLAS------VLAHLDVI 598 Query: 590 IALAILA--KEQNYCRPIID--NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPN 645 ++ A ++ Y RP I + N ++K+ RHP +E Q FI ND L Sbjct: 599 VSFAHVSVHAPTAYVRPKIHPRGTGNTVLKEARHPCME----MQDDISFITNDVSLL--- 651 Query: 646 DKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADN 705 +N ++TGPNMGGKST++RQ +I +MAQ G +VP S A + I D + +RVG++D+ Sbjct: 652 -RNESSFLIITGPNMGGKSTYIRQIGVIALMAQTGCFVPCSEAELTIFDSILARVGASDS 710 Query: 706 LASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCR 765 G STFM EM+ETA+IL AT++S +I+DE+GRGT+T DG +AWA E++ RC Sbjct: 711 QLKGVSTFMAEMLETANILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIVTEIRCF 770 Query: 766 GLLATHFHELTDLSK----SLKRFHNATLQVSDSNEG------------IIFLHKVIPGI 809 L ATHFHELT L + S+K H ++D EG + L++V PG+ Sbjct: 771 ALFATHFHELTALQERYPNSVKNLHVVAF-INDGAEGKQHSSTDKKKREVTLLYRVEPGV 829 Query: 810 ADHSYGIQVGKLAGLPNTVISRA 832 D S+GI V +L P V++ A Sbjct: 830 CDQSFGIHVAELVRFPEKVVNMA 852 >gi|305855210|ref|NP_001182286.1| DNA mismatch repair protein Msh2 [Sus scrofa] gi|285818416|gb|ADC38881.1| MutS-like protein 2 [Sus scrofa] Length = 934 Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 188/663 (28%), Positives = 299/663 (45%), Gaps = 82/663 (12%) Query: 285 DIQSTLFIDSAARSNLEILRTLSGSRE-----QSLLKTIDYSITGAGGRLFAERIASPLT 339 D + +D AA + L GS E QSL ++ T G RL + I PL Sbjct: 295 DFSQYMKLDMAA---VRALNLFQGSVEDTAGSQSLAALLNKCKTPQGQRLVNQWIKQPLM 351 Query: 340 DSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 D +I RL+ + F+++ L +Q+ +L+ PD+ R + + +D + GI Sbjct: 352 DKNRIEERLNLVEAFVEDAELRQSLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGI 411 Query: 399 RSGINILNLFLKNDLPEE-------------LRGAVEKLKKLPQSLEKTLSSMLSDDLPT 445 N++ K + + LR K +++ +E TL D+ Sbjct: 412 NQLPNVIQAMEKYEGQHQALLLAVFVTPLIDLRSDFSKFQEM---IETTL------DMDQ 462 Query: 446 FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYF 502 + ++ D +L E R + D ++ + S + A + + K +K+ + GY+ Sbjct: 463 VENHEFLVKPSFDPNLSELREIMDDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYY 522 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT-NATNSALLIELES 561 VT VL+ + F N +FT +L L T N T Sbjct: 523 FRVTCKEEKVLRNN----KNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKT---------E 569 Query: 562 FEILSNAIIEQ--------SESLDNASQVIAIIDISIALAILAKEQN--YCRPII--DNS 609 +E NAI+++ E + + V+A +D ++ A ++ Y RP+I Sbjct: 570 YEEAQNAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPVILEKGQ 629 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 +K RH VE Q FI ND +K+ ++TGPNMGGKST++RQ Sbjct: 630 GRITLKASRHACVEV----QDEVAFIPNDVHF----EKDKQMFHIITGPNMGGKSTYIRQ 681 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 ++V+MAQ+G +VP A + IVD + +RVG+ D+ G STFM EM+ETASIL AT Sbjct: 682 TGVVVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATK 741 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 S +I+DE+GRGT+T DG +AWA EY+ + ATHFHELT L+ + +N Sbjct: 742 DSLIIIDELGRGTSTYDGFGLAWAIPEYIATKIGAFCMFATHFHELTALANQIPAVNNLH 801 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI---LKTFEKLYHHN 846 + + E + L++V G+ D S+GI V +LA P VI A L+ F+ + Sbjct: 802 VAALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPRHVIECAKQKALELEEFQNIGAPQ 861 Query: 847 QKDMRLYYPEIQTKESKNNLSKND-----KLFVEKIKCLNLDEMSPLTALKTLYAVKAWT 901 + D E++ + L + + FV K+K + EMS L +KA Sbjct: 862 EHD------EMEPAAKRCYLEREQGEKIIQEFVSKVKQVPFTEMSEENITMKLKQLKAEV 915 Query: 902 LEK 904 + K Sbjct: 916 MAK 918 >gi|145252302|ref|XP_001397664.1| DNA mismatch repair protein msh-2 [Aspergillus niger CBS 513.88] gi|134083212|emb|CAK42850.1| unnamed protein product [Aspergillus niger] Length = 945 Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 189/627 (30%), Positives = 302/627 (48%), Gaps = 68/627 (10%) Query: 250 GSFSQVE-KTAAAAAISYIKKTQMVNKPTIGYPER---EDIQSTLFIDSAARSNLEIL-R 304 G+ Q E K A +A + IK ++ P+ R D+ + +DS+A L ++ Sbjct: 256 GTLPQTELKLAMGSAAALIKYLGVMTDPSNFGQYRLYQHDLSQFMKLDSSALRALNLMPG 315 Query: 305 TLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPI 364 GS+ SL +++ T G RL A+ + PL D +I R + F+ + L + Sbjct: 316 PRDGSKSMSLFGLLNHCKTPVGSRLLAQWLKQPLMDKAEIEKRQQLVESFVMDTELRQTM 375 Query: 365 QK-ILKSSPDVPRSLSRLKIGRGEPKDIA-VIRDGIR------SGINILNLFLKNDLPEE 416 Q+ L+S PD+ R R + + +D+ V + IR S N+++ + L E Sbjct: 376 QEEHLRSIPDLYRLAKRFQRKQATLEDVVRVYQVAIRLPGFVASLENVMDEQYQTPLEAE 435 Query: 417 ----LRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSK 472 LR + L KL + +E T+ DL + ++ D SL R D+ + Sbjct: 436 YTSKLRSHSDNLAKLEEMVETTV------DLDALENHEFIIKPEFDESLRIIRKKLDKLR 489 Query: 473 RIIASLQLKYA---EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTM 529 + S + ++ K L ++++ G+ +T + A ++ +K + T Sbjct: 490 HDMDSEHRRVGGDLDQEVDKKLFLENHRVHGWCFRLTRNEAGCIR----NKREYQECSTQ 545 Query: 530 SNLTRFTTLELIDLENRIT------NATNSALLIELESFEILSNAIIEQSESLDNASQVI 583 N FTT + L N T + L+ E+ ++EQ + V+ Sbjct: 546 KNGVYFTTSTMQALRREHDQLSSNYNRTQTGLVSEVVGVAASYCPVLEQ------LAGVL 599 Query: 584 AIIDISIALAILA--KEQNYCRPIID--NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDC 639 A +D+ ++ A A Y RP I + N ++K+ RHP +E Q FI ND Sbjct: 600 AHLDVIVSFAHCAVHAPTPYVRPKIHPRGTGNTVLKEARHPCME----MQDDISFITNDV 655 Query: 640 DLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSR 699 L ++ ++TGPNMGGKST++RQ +I +MAQ G +VP S A + I D + +R Sbjct: 656 SLI----RDESSFLIITGPNMGGKSTYIRQIGVIALMAQTGCFVPCSEAELTIFDCILAR 711 Query: 700 VGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLH 759 VG++D+ G STFM EM+ET++IL AT++S +I+DE+GRGT+T DG +AWA E++ Sbjct: 712 VGASDSQLKGVSTFMAEMLETSNILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIV 771 Query: 760 ETNRCRGLLATHFHELTDLS----KSLKRFH------NATLQVSDSNEG----IIFLHKV 805 RC GL ATHFHELT L+ KS K H + T DS + + L++V Sbjct: 772 TEIRCFGLFATHFHELTALADRYPKSAKNLHVVAFIGDGTGNEEDSKDSKRDQVTLLYRV 831 Query: 806 IPGIADHSYGIQVGKLAGLPNTVISRA 832 PGI D S+GI V +L P V++ A Sbjct: 832 EPGICDQSFGIHVAELVRFPEKVVNMA 858 >gi|151554455|gb|AAI49795.1| MSH3 protein [Bos taurus] Length = 361 Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 122/301 (40%), Positives = 187/301 (62%), Gaps = 27/301 (8%) Query: 571 EQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQS 630 E +L A +A ID ++LA +AK+++YCRP + ++K+GRHP+++ L +Q Sbjct: 45 EHYHTLCKAVHHLATIDCILSLAKVAKQRDYCRPTLQEERKILIKNGRHPVIDVLLGEQD 104 Query: 631 SKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHI 690 F+ N DLS +S ++ ++TGPNMGGKS++++Q ALI +MAQ+GSYVPA A I Sbjct: 105 Q--FVPNSTDLS----GDSERVMIITGPNMGGKSSYIKQVALITVMAQIGSYVPAEEATI 158 Query: 691 GIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSI 750 GIVD +F+R+G+ADN+ G+STFM E+ +TA I+ +AT QS VILDE+GRGT+T DG++I Sbjct: 159 GIVDGIFTRMGAADNIYKGQSTFMEELTDTAEIIRKATPQSLVILDELGRGTSTHDGIAI 218 Query: 751 AWATIEYLHETNRCRGLLATHFHELTDLSKSLKR----FHNATL--------------QV 792 A+AT+E+ + L TH+ + +L KS + +H L QV Sbjct: 219 AYATLEHFIRDVKSLTLFVTHYPPVCELEKSYSQQVGNYHMGFLVNEDESKQDAGEEDQV 278 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 DS +IFL+++ GIA SYG+ V KLA +P ++ +A K E L + +K ++ Sbjct: 279 PDS---VIFLYQITRGIAARSYGLNVAKLADVPGEILKKAASKSKELEGLVNMKRKKLKC 335 Query: 853 Y 853 + Sbjct: 336 F 336 >gi|26252149|gb|AAH40784.1| Msh3 protein [Mus musculus] Length = 385 Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 138/393 (35%), Positives = 218/393 (55%), Gaps = 29/393 (7%) Query: 502 FIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL-IELE 560 IE+ +S+ S + D ++ + ++RF +++ R+ +L E Sbjct: 1 MIEIKNSAVSCIPAD------WVKVGSTKAVSRFHPPFIVESYRRLNQLREQLVLDCNAE 54 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHP 620 L N E +L A +A +D +LA +AK+ NYCRP + I+K+GRHP Sbjct: 55 WLGFLEN-FGEHYHTLCKAVDHLATVDCIFSLAKVAKQGNYCRPTLQEEKKIIIKNGRHP 113 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +++ L +Q F+ N LS ++S ++ ++TGPNMGGKS++++Q AL+ IMAQ+G Sbjct: 114 MIDVLLGEQDQ--FVPNSTSLS----QDSERVMIITGPNMGGKSSYIKQVALVTIMAQIG 167 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 SYVPA A IGIVD +F+R+G+ADN+ GRSTFM E+ +TA I+ +A+ QS VILDE+GR Sbjct: 168 SYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRRASPQSLVILDELGR 227 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS----LKRFHNATLQVSDSN 796 GT+T DG++IA+AT+EY + L TH+ + +L K + +H L D + Sbjct: 228 GTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKCYPEQVGNYHMGFLVNEDES 287 Query: 797 -----------EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHH 845 + + FL+++ GIA SYG+ V KLA +P V+ +A K E L Sbjct: 288 KQDSGDMEQMPDSVTFLYQITRGIAARSYGLNVAKLADVPREVLQKAAHKSKELEGLVSL 347 Query: 846 NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIK 878 +K + + T K+ + DKL +E+I+ Sbjct: 348 RRKRLECFTDLWTTHSVKDLHTWADKLEMEEIQ 380 >gi|302697521|ref|XP_003038439.1| hypothetical protein SCHCODRAFT_47624 [Schizophyllum commune H4-8] gi|300112136|gb|EFJ03537.1| hypothetical protein SCHCODRAFT_47624 [Schizophyllum commune H4-8] Length = 981 Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 130/329 (39%), Positives = 189/329 (57%), Gaps = 38/329 (11%) Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 L + I T + + E E+F+IL I + +L ++V+ +D+++ A LA E Y Sbjct: 624 LGSEIVETTLALQVAEREAFDILRREINAHAPALRRNARVLDELDVTLGFAALAAEHGYV 683 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIAN------DCDLSCPNDKNSGKLWLLT 656 RP++ + T + V DGRHP VE L + + F N CP + L +LT Sbjct: 684 RPVMRDDTTYHVTDGRHPTVEMGL-LSAGRTFTPNTQQAISHTPTCCPTP--TAHLHILT 740 Query: 657 GPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVE 716 GPNM GKST LRQ ALI I+AQ GS+VPA+ AH+G++D +F+RVG+ D+LA RSTFMVE Sbjct: 741 GPNMAGKSTVLRQTALIAILAQAGSFVPATAAHLGLIDAVFARVGARDDLARDRSTFMVE 800 Query: 717 MIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELT 776 M+ET ++L +AT++S VI+DEIGRGTA DGL+IA+AT+ +L NRCR L ATHF E+ Sbjct: 801 MLETGAVLRRATSRSLVIMDEIGRGTAFRDGLAIAFATVVHLLRVNRCRALFATHFTEVA 860 Query: 777 DLS--KSLKRFHNATLQV-SDS-NEG-------------------------IIFLHKVIP 807 DL ++ +R H + SD NE I + +++ Sbjct: 861 DLVGWEAERRTHARAMDADSDCDNEADDRDVNPFKDVAFFCTDVYDADSSHIAYAYRLRR 920 Query: 808 GIADHSYGIQVGKLAGLPNTVISRAYDIL 836 G+ S+ ++V LAG+P +S A + L Sbjct: 921 GVNRRSHALRVAALAGVPQAALSVAQNTL 949 Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 115/420 (27%), Positives = 189/420 (45%), Gaps = 52/420 (12%) Query: 40 PDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLI 99 P+ L+ R+G FYE +F A + L I LT R K GK +PMCG P+ + Y++ L+ Sbjct: 14 PNCLLLTRVGQFYESYFSQAAEIASLLNIKLTTR-KWGGKRVPMCGFPLAHLDKYLRVLV 72 Query: 100 KIGHR-IAICEQI------ESPLEAKKRGNKS------LVRRNVVRLVTPGTLTEDQLLS 146 R +A+CE+ ++ A K G S R V R++TPGTL ++ L+ Sbjct: 73 GENRRLVAMCEEFPVSSSTDTSNGALKEGKISRGLPTRTFERRVTRVITPGTLIDEPFLN 132 Query: 147 PTDSNYLMAVARIRTEWA-----------IAWIDISTGIFKISTSNHDRLISDIMRIDPR 195 ++NYL+A++ + A +AWID+STG F S+ D L ++ RI P+ Sbjct: 133 QYENNYLLAISAEGAQAATTDNIEAPQLGLAWIDVSTGEFFSKVSSVDTLRDELARIGPK 192 Query: 196 EIIFSE------------KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYN- 242 E++ + KE H +L E V+ D ++ S D Sbjct: 193 EVVLDKSMKQQEAANDEGKEEKHPVLAALMEEQYFVSYQTHEGDEDARMTTSAKDDAATR 252 Query: 243 ITTVDTF----------GSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPERE---DIQST 289 +T D SF+ +E +A + +Y++ + P +G P RE Sbjct: 253 LTEPDDLLAEAARSPPPSSFAPMETSAISLLTAYLRAHLREHMPVLGLPVREVSLAPPPR 312 Query: 290 LFIDSAARSNLEILRTL-SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRL 348 + +D+ LEI + G + SLL + + T G RL A +A+P +I +R Sbjct: 313 MHLDAHTLRALEIREGMREGGTKGSLLSVVRRTKTTGGTRLLARWLAAPSLSLAEITSRH 372 Query: 349 DSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF 408 + F + P L + +L S PDV R +L +G+G+ D+ + IR+ + N+ Sbjct: 373 SLVAFLLARPHLRVDLSALLVSIPDVGRLSQKLMLGKGDASDVRAVGRAIRAWNRLRNMI 432 >gi|240280777|gb|EER44281.1| DNA mismatch repair protein [Ajellomyces capsulatus H143] gi|325088962|gb|EGC42272.1| DNA mismatch repair protein [Ajellomyces capsulatus H88] Length = 941 Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 185/623 (29%), Positives = 301/623 (48%), Gaps = 81/623 (13%) Query: 259 AAAAAISYIKKTQMVNKPTIGYPE--REDIQSTLFIDSAARSNLEIL-RTLSGSREQSLL 315 AAAA I Y+ M + G + D+ + +D+AA L ++ G++ SL Sbjct: 262 AAAALIKYLGA--MSDATNFGQYRLYQHDLSQYMKLDAAALRALNLMPGPRDGAKNMSLY 319 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDV 374 +++ T G RL A+ + PL + I R + F+ + L +Q+ L+S PD+ Sbjct: 320 GLLNHCKTPVGSRLLAQWLKQPLMNHEDIEKRQQLVEAFVVDTELRQTMQEDHLRSIPDL 379 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL-----FLKNDLPEELRGAVE-----KL 424 R R + +D+A + D +R ++ L L+N + E+ +G +E KL Sbjct: 380 YRLAKRFQ------RDMANLEDVVRVYQVVIRLPGFINTLENVMDEQYQGPLETEYTTKL 433 Query: 425 KKLPQSLEKTLSSMLSD--DLPTFKRDGGFLRDGADASL-------DETRSLRDQSKRII 475 + + + K L+ M+ DL ++ D SL D + D +I+ Sbjct: 434 RNISDNFSK-LAEMVETTVDLDALDNHEFIIKPEFDDSLRIIKKKLDRLKHDMDTEHKIV 492 Query: 476 ASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRF 535 + + K L ++++ G+ +T + AS ++ +K + T N F Sbjct: 493 G----RDLNQDTDKKLLLENHRVHGWCFRLTRNEASCIR----NKREYQECSTQKNGVYF 544 Query: 536 TTLELIDLENRIT------NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDIS 589 TT ++ L N T + L+ E+ + ++EQ S V+A +D+ Sbjct: 545 TTSTMLSLRREHDQLSSNYNRTQTGLVQEVVNVAASYCPLLEQLAS------VLAHLDVI 598 Query: 590 IALAILA--KEQNYCRPIID--NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPN 645 ++ A ++ Y RP I + N ++K+ RHP +E Q FI ND L Sbjct: 599 VSFAHVSVHAPTAYVRPKIHPRGTGNTVLKEARHPCME----MQDDISFITNDVSLL--- 651 Query: 646 DKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADN 705 +N ++TGPNMGGKST++RQ +I +MAQ G +VP S A + I D + +RVG++D+ Sbjct: 652 -RNESSFLIITGPNMGGKSTYIRQIGVIALMAQTGCFVPCSEAELTIFDSILARVGASDS 710 Query: 706 LASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCR 765 G STFM EM+ETA+IL AT++S +I+DE+GRGT+T DG +AWA E++ RC Sbjct: 711 QLKGVSTFMAEMLETANILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIVTEIRCF 770 Query: 766 GLLATHFHELTDLSK----SLKRFHNATLQVSDSNEG------------IIFLHKVIPGI 809 L ATHFHELT L + S+K H ++D EG + L++V PG+ Sbjct: 771 ALFATHFHELTALQERYPNSVKNLHVVAF-INDGPEGKQHSSTDKKKREVTLLYRVEPGV 829 Query: 810 ADHSYGIQVGKLAGLPNTVISRA 832 D S+GI V +L P V++ A Sbjct: 830 CDQSFGIHVAELVRFPEKVVNMA 852 >gi|17508445|ref|NP_491202.1| MSH (MutS Homolog) family member (msh-2) [Caenorhabditis elegans] gi|3886083|gb|AAC78226.1| Msh (muts homolog) family protein 2 [Caenorhabditis elegans] Length = 849 Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 183/617 (29%), Positives = 299/617 (48%), Gaps = 67/617 (10%) Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRT----LSGS 309 Q+ + AA S +K + N T G + IDS A LE+ + L S Sbjct: 244 QILHSNAADEYSISEKYSIFNYGTHG---------NMLIDSCAVEALELFQLNYNYLEKS 294 Query: 310 REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQ-KIL 368 +L ++ T G +L + ++ PL IN RLD + +N + ++ IL Sbjct: 295 NNLTLYNVLNKCKTLPGEKLLRDWLSRPLCQIDHINERLDIVEALFENQTIRQKLRDSIL 354 Query: 369 KSSPDVPRSLSRLKIGRGEPKDI------AVIRDGIRSGINIL----------NLFLKND 412 PD + L+R + + +D+ A + + + + L N LK++ Sbjct: 355 ARMPDCSQ-LARRLMRKCTLQDLNRFYQAATLLETVEMQLIQLSEAEQFAPSINRLLKSE 413 Query: 413 LPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTF--KRDGGFLRDGAD--ASLDETRSLR 468 + E L+ VE+ + +L D+ F +++ +R D + E Sbjct: 414 ITEILK-KVERFQ------------VLCDEFFDFDYEKENKEIRVRVDFVPEIQEISEKL 460 Query: 469 DQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQT 528 +Q +R+ L+ KY+ + + NLK+ N+ G++ VT +K + KD I T Sbjct: 461 EQMERVAEKLRKKYSAKFECDNLKLDKNSQYGFYFRVTLKE----EKSIRKKDVHILETT 516 Query: 529 MSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDI 588 + +F+ EL D+ + E E +L E + +Q+IA +D+ Sbjct: 517 KGSGVKFSVGELSDINDEFLEFHLKYTRAEEEVISMLCKKAEEFIPLIPAMAQLIATLDV 576 Query: 589 SIALAILAKEQN--YCRP--IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 ++L+ A + Y RP + S +K RHP++E S KPFI ND L Sbjct: 577 FVSLSTFAATSSGIYTRPNLLPLGSKRLELKQCRHPVIEGN----SEKPFIPNDVVL--- 629 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 + +L +LTG NMGGKST+LR AL +++AQ+GS+VP S A I +VD +F+RVG++D Sbjct: 630 ---DKCRLIILTGANMGGKSTYLRSAALSILLAQIGSFVPCSSATISVVDGIFTRVGASD 686 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 + G STFM EM++ ++IL +AT SFV++DE+GRGT+T DG IA A + + +C Sbjct: 687 KQSQGISTFMAEMLDCSAILQRATKNSFVVIDELGRGTSTFDGFGIASAIAQDILNRIQC 746 Query: 765 RGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGL 824 + ATHFHE+ L++ + V N I L+KV G+A S+G+QV K+ G+ Sbjct: 747 LSIFATHFHEMGKLAEQPGAVA-LQMGVQIENNEIHMLYKVFEGVAQCSFGLQVAKMVGI 805 Query: 825 PNTVISRAYDILKTFEK 841 VI++A +L+ EK Sbjct: 806 DENVINKAAQLLEGLEK 822 >gi|224118890|ref|XP_002317931.1| predicted protein [Populus trichocarpa] gi|222858604|gb|EEE96151.1| predicted protein [Populus trichocarpa] Length = 944 Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 181/591 (30%), Positives = 292/591 (49%), Gaps = 69/591 (11%) Query: 285 DIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSIT-GAGGRLFAERIASPLTDST 342 ++ S + +DSAA L +L + + + + SL ++ + T G G RL + PL + Sbjct: 291 NLDSYMRLDSAATRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLEVD 350 Query: 343 KINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGI 402 IN+RLD + F+ + L +++ LK D+ R + ++ GR G+ + Sbjct: 351 AINSRLDLVQAFVDDTGLRQDLRQHLKRISDIERLMHIVEKGRA----------GLHHIV 400 Query: 403 NILNLFLKNDLPEELRGAVEKLKKLPQSL--EKTLSSM--LSDD--LPTF---------- 446 + ++ LP ++GA+E+ SL EK L S+ +DD L F Sbjct: 401 KLYQSIIR--LPY-IKGALERYDGQFSSLIKEKYLESLEVWTDDNHLNKFIALVETAVDL 457 Query: 447 -KRDGG--FLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLG 500 + D G + G +A+L ++ ++ + I +L + A + + K LK+ G Sbjct: 458 DQLDNGEYMISPGYEAALGALKAEQESLEHQIHNLHKQTASDLDLPLDKGLKLDKGTQYG 517 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELE 560 + +T ++K L ++ FI +T + +FT +L L ++ + + E Sbjct: 518 HVFRITKKEEPKIRKKLTTQ--FIVLETRKDGVKFTNTKLKKLGDQYQKIVENYKSRQKE 575 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKE--QNYCRPIIDNS--TNFIVKD 616 + SE + S +++ +D+ ++ A LA Y RP I S + I++ Sbjct: 576 LVSRVVQITATFSEVFEKLSGLLSEMDVLLSFADLASSCPTPYTRPDITPSDVGDIILEG 635 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLW--LLTGPNMGGKSTFLRQNALIV 674 RHP VE Q FI NDC L GK W ++TGPNMGGKSTF+RQ + + Sbjct: 636 SRHPCVEA----QDWVNFIPNDCKLV------RGKSWFQIITGPNMGGKSTFIRQIGVNI 685 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 +MAQ+GS++P A I + D +F+RVG+ D G STFM EM+ETASIL AT++S +I Sbjct: 686 LMAQVGSFIPCDKATISVRDCIFARVGAGDCQMRGVSTFMQEMLETASILKGATDRSLII 745 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK-------------S 781 +DE+GRGT+T DG +AWA E+L + L ATHFHELT L+ Sbjct: 746 IDELGRGTSTYDGFGLAWAICEHLVRELKAPTLFATHFHELTALAHQKPDQEPHAKQIVG 805 Query: 782 LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 + +H + + SN + L+KV PG D S+GI V + A P +V++ A Sbjct: 806 VANYH-VSAHIDSSNHKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLA 855 >gi|170065385|ref|XP_001867917.1| DNA mismatch repair protein spellchecker 1 [Culex quinquefasciatus] gi|167882495|gb|EDS45878.1| DNA mismatch repair protein spellchecker 1 [Culex quinquefasciatus] Length = 901 Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 204/761 (26%), Positives = 358/761 (47%), Gaps = 93/761 (12%) Query: 164 AIAWIDISTGIFKISTSNHDRLISD----IMRIDPREIIF-SEKELSHAEYKSLFETLGN 218 IA ++ + +F +S D S+ I+ + P+E I S ++ + K+L E Sbjct: 145 GIACVENNERLFSVSEFVDDDFYSELEAVIVILGPKECILPSPRDADYDRIKTLLERNNV 204 Query: 219 VAVAQPNVFF----DHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISY-IKKTQMV 273 V ++ F + IS+ ++ ++ + + KT A AA+ I+ ++ Sbjct: 205 VVTSKKKQEFSLEKNEVISDLNKLLHFAEGQQESANTMPETSKTTALAALGVAIRYLELT 264 Query: 274 N-KPTIGYPERE--DIQSTLFIDSAARSNLEIL------RTLSGSREQSLLKTIDYSITG 324 N G+ E + ++ + +D+AA S L + + + S+L +D T Sbjct: 265 NDSANHGHYELKLLNLHRFVHLDAAAVSALNLFPKPGLAMNSAAFKWHSVLGVLDRCRTP 324 Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI-LKSSPDVPRSLSRLKI 383 G RL + + PL I R D + + + + + + + LK PD+ + +L Sbjct: 325 QGHRLVNQWLKQPLRSIDIIKDRQDIVESLVDSTNVRSELHDVHLKRIPDILILIKKLLR 384 Query: 384 GRGEPKDI-----AVIRDGI--RSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS 436 + +DI V+R I R +I N +++ + + ++ + LK +E+ L Sbjct: 385 KKASLQDIYRLYQVVLRIPIVLRLLESIENTAMRSIVLDPMKDTLGDLKMFKSMVEQIL- 443 Query: 437 SMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKI 493 DL +R ++ D L E + D+ + + L K A++ + ++K+ Sbjct: 444 -----DLTAIERGEYLVKPTFDDQLKEFKQEMDEVESKMKRLLTKVADDLGLDAGSSIKL 498 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 + G+ ++ ++++K +F + RFT +L DL +A Sbjct: 499 DFVGHHGFHFRISLKDETLIRK----STKFRVLDAVKGGARFTNDKLTDLNGDFASAK-- 552 Query: 554 ALLIELESFEILSNAIIEQS--------ESLDNASQVIAIID--ISIALAILAKEQNYCR 603 ES+E +I+++ E + IA +D +S A+A ++ + Y R Sbjct: 553 ------ESYEAQQKSIVDEVIRIAIGYVEPWTMLNNQIAQLDCFVSFAIAAVSAPEPYVR 606 Query: 604 PIIDNSTNFIVKDGR-------HPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLT 656 P I F + +GR HP +E Q FIAND +KN ++++T Sbjct: 607 PKI-----FAMGEGRLKLTQLRHPCLE----LQEDVSFIANDAVF----EKNKTTMYIIT 653 Query: 657 GPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVE 716 GPNMGGKSTF+R + V+MA +G++VP + A I IVD + RVG+ DNL+ G STFMVE Sbjct: 654 GPNMGGKSTFIRSVGVAVLMAHVGAFVPCAEAEISIVDSILGRVGADDNLSKGLSTFMVE 713 Query: 717 MIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELT 776 M+ETA I+ AT S VI+DE+GRGT+T +G IAW+ EYL + +C L ATHFHE+T Sbjct: 714 MVETAGIVRTATENSLVIIDELGRGTSTYEGCGIAWSIAEYLAKQTKCFSLFATHFHEIT 773 Query: 777 DLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 ++++ +K + + +G L++V G+ S+GI+V KLA P V+ A Sbjct: 774 EMTEQVKTVKSCHMDAIADKDGFTLLYQVKEGVMPKSFGIKVAKLANFPTAVVELA---- 829 Query: 837 KTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKI 877 +KLY D +Y ++Q + + + K+F+E + Sbjct: 830 ---QKLY----DDCEDHYSQMQIENDQEGI----KVFLESL 859 >gi|77736115|ref|NP_001029756.1| DNA mismatch repair protein Msh2 [Bos taurus] gi|85701144|sp|Q3MHE4|MSH2_BOVIN RecName: Full=DNA mismatch repair protein Msh2; AltName: Full=MutS protein homolog 2 gi|75775312|gb|AAI05269.1| MutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli) [Bos taurus] gi|296482595|gb|DAA24710.1| DNA mismatch repair protein Msh2 [Bos taurus] Length = 934 Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 183/631 (29%), Positives = 291/631 (46%), Gaps = 66/631 (10%) Query: 307 SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK 366 SGS QSL ++ T G RL + I PL D +I RL+ + F+++ L +Q+ Sbjct: 321 SGS--QSLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQNLQE 378 Query: 367 -ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEE--------- 416 +L+ PD+ R + + +D + GI N++ K + + Sbjct: 379 DLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIQALEKYEGKHQALFLAVFVT 438 Query: 417 ----LRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSK 472 LR K +++ +E TL D+ + ++ D +L E R + D + Sbjct: 439 PLIDLRSDFSKFQEM---IETTL------DMDQVENHEFLVKPSFDPNLSELREIMDDLE 489 Query: 473 RIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTM 529 + + S + A + + K +K+ + GY+ VT VL+ + F Sbjct: 490 KKMQSTLVSAARDLGLDPGKQIKLDSSTQFGYYFRVTCKEEKVLRNN----KNFSTVDIQ 545 Query: 530 SNLTRFTTLELIDLENRIT-NATNSALLIELESFEILSNAIIEQ--------SESLDNAS 580 N +FT +L L T N T +E NAI+++ E + + Sbjct: 546 KNGVKFTNSKLTSLNEEYTKNKT---------EYEEAQNAIVKEIVNISSGYVEPMQTLN 596 Query: 581 QVIAIIDISIALAIL--AKEQNYCRPII--DNSTNFIVKDGRHPIVEKTLKQQSSKPFIA 636 V+A +D ++ A + A Y RP+I +K RH VE Q FI Sbjct: 597 DVLAQLDAVVSFAHVSDAAPVPYVRPVILEKGRGRITLKASRHACVEV----QDEVAFIP 652 Query: 637 NDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKL 696 ND +K+ ++TGPNMGGKST++RQ ++V+MAQ+G +VP +A + IVD + Sbjct: 653 NDVHF----EKDKQMFHIITGPNMGGKSTYIRQTGVVVLMAQIGCFVPCEWAEVSIVDCI 708 Query: 697 FSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIE 756 +RVG+ D+ G STFM EM+ETASIL AT S +I+DE+GRGT+T DG +AWA E Sbjct: 709 LARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISE 768 Query: 757 YLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGI 816 Y+ + ATHFHELT L+ + +N + + E + L++V G+ D S+GI Sbjct: 769 YIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGI 828 Query: 817 QVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKL---F 873 V +LA P VI A E+ + + K E K + +K+ F Sbjct: 829 HVAELANFPRHVIECAKQKALELEE-FQNIGKPQECDEMEPAAKRCYLEREQGEKIIQEF 887 Query: 874 VEKIKCLNLDEMSPLTALKTLYAVKAWTLEK 904 + K+K + EMS + + L +KA + K Sbjct: 888 LSKVKQVPFTEMSEESITRKLKQLKAEVIAK 918 >gi|225556818|gb|EEH05106.1| DNA mismatch repair protein msh6 [Ajellomyces capsulatus G186AR] Length = 1189 Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 219/871 (25%), Positives = 377/871 (43%), Gaps = 132/871 (15%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P +QY EIK D++VF++ G FYEL+ +DA + + + LT R ++ M G Sbjct: 335 SPFEKQYWEIKQKFWDTIVFFKKGKFYELYENDATIGHQLFDLKLTDR-----VNMRMVG 389 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL--EAKKRGNKS---------LVRRNVVRLV 134 VP + +H+ + + G +IA +Q ES L E +++ KS ++RR + ++ Sbjct: 390 VPEMSLDHWANQFVAKGFKIARVDQSESALGKEMREKQGKSNGTPGKQDKIIRRELSCVL 449 Query: 135 TPGTLTEDQLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFK----ISTSNHDRLI 186 T GTL + +L S Y +A+ + IA++D +TG F I ++ + Sbjct: 450 TSGTLVDGSMLQDDMSTYCVAIKEALVNDLPAFGIAFVDTATGQFYLAEFIDDADMTKFE 509 Query: 187 SDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVA---QPNVFF---DHSISESRIADY 240 + + + P+E++ + +S + L G + +P F D ++ E ++Y Sbjct: 510 TFVAQTRPQELLLEKSVMSTKALRILKNNTGPTTLWNYLKPCKEFWEADVTVRELDASNY 569 Query: 241 YNITTVDTFGSFSQVEK---------TAAAAAISYIKKTQMVNK-PTIG-YPEREDIQ-- 287 + D ++ + + +A A + Y++ ++ TIG + + I+ Sbjct: 570 FVSEEGDNIAAWPEALRQARDKEFVMSAFGALVQYLRMLKIERDLITIGNFTWYDPIKKA 629 Query: 288 STLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINT 346 ++L +D NLEI + G +E +L ++ IT G RLF + + PL D+ KIN+ Sbjct: 630 TSLVLDGQTLINLEIFANSFDGGQEGTLFHLLNRCITPFGKRLFKQWVCHPLMDTRKINS 689 Query: 347 RLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILN 406 RLD+++ + + N L PD+ R +SR+ GR + +D + +G ++ Sbjct: 690 RLDAVDALNADSSVQNQFSSQLTKMPDLERLISRVHAGRCKAQDFLHVLEGFEKIDYTMS 749 Query: 407 LFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGA------DAS 460 L + E GA+ +L L L + T +D G L A DAS Sbjct: 750 LLKEIGSGE---GAIGQLVASMPDLNGYLQYWKTAFDRTKAKDSGILVPEAGVEEDFDAS 806 Query: 461 LDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESK 520 D + R++ ++ K + + N Y +EV +V K Sbjct: 807 HDRISEIESDLDRLLKEVRKKLGSNAIV----YRDNGKEIYQLEVPIKIKNVPKD----- 857 Query: 521 DRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNAS 580 + RF EL L ++ A + I E E + A Sbjct: 858 --WDQMSATKQAKRFYFPELRSLIRQLQEAQETHSQIVKEVASRFYARFDENYSTWLAAV 915 Query: 581 QVIAIIDISIALAILAKEQNY--CRPII--DNSTNFIVKDGRHPIVEKTLKQQSSKPFIA 636 + IA +D I+LA + Y CRP+ D + ++ RHP V Sbjct: 916 RTIAQLDCLISLAKASSALGYPSCRPVFVDDERSVLEFEELRHPSV-------------- 961 Query: 637 NDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKL 696 IMAQ+G YVP A + VD++ Sbjct: 962 --------------------------------------IMAQIGCYVPCQSARLTPVDRI 983 Query: 697 FSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIE 756 SR+G+ DN+ + +STF VE+ ET IL++AT +S VILDE+GRGT++ DG+++A A + Sbjct: 984 MSRLGANDNIFASQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVLH 1043 Query: 757 YLHETNRCRGLLATHFHELT-------DLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGI 809 ++ G ATH+H L +++ R H V + + FL+K+ GI Sbjct: 1044 HVATHIGALGFFATHYHSLASEFEGHPEIAPRRMRIH-----VDEEERRVTFLYKLEEGI 1098 Query: 810 ADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 A+ S+G+ + G+PN V+ RA K +E Sbjct: 1099 AEGSFGMHCASMCGIPNKVVERAEIAAKQWE 1129 >gi|269859802|ref|XP_002649625.1| DNA mismatch repair protein Msh6 [Enterocytozoon bieneusi H348] gi|220066988|gb|EED44457.1| DNA mismatch repair protein Msh6 [Enterocytozoon bieneusi H348] Length = 894 Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 234/855 (27%), Positives = 390/855 (45%), Gaps = 112/855 (13%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP +Q+ EIK + D +VF++ G FYEL+ DA +A + + + +R ++ M G Sbjct: 108 TPFEKQFWEIKKNHWDKIVFFKKGKFYELYEIDADIARKLFDLRVKERI-----NMRMAG 162 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKS------LVRRNVVRLVTPGTL 139 P +T + + K +K G+ I ++ E+ + K R ++ +++R++ ++TP T+ Sbjct: 163 FPDYTYDIWANKFLKEGYTIVRVDERENGIAKKIREKETNAKKEKIIQRDITEIITPSTI 222 Query: 140 TEDQLLSPTDSNYLMAVARI----------RTEWAIAWIDISTGIFKISTSNHDRLISDI 189 + Y+ + ++I D S F S S D DI Sbjct: 223 YNFNYIDNPLPFYIAILISTPICHNDNCSGDYHYSIMLYDASIN-FIYSDSVCDSFSYDI 281 Query: 190 MR-----IDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNIT 244 ++ D +E++ + + K + T N PN+ F E Y Sbjct: 282 IKTIFAQYDIKEVLTDMINIKFEKTKVIVPTNENYCRLFPNLIFRTPGEEKCFNQLY--- 338 Query: 245 TVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEIL- 303 F ++++T + + + P ++ + ++ +D+A N++IL Sbjct: 339 -----CYFQELKRTEIFSQVQIL--------PLFC---KDIVNNSFQLDAATIQNMDILT 382 Query: 304 RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTR---LDSINFFIQNPIL 360 + + SL I+Y T G R + +PL + I R D I F Sbjct: 383 NNFDKTTKHSLFSKINYCSTPFGVRKLRNWLLNPLINVELIKERHNLTDEIKKFD----- 437 Query: 361 INPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGA 420 IN ++ +L D+ R RLK D+ + I I +L L N+ +E Sbjct: 438 INQLKILLTDLGDIERIHCRLKQKVVNINDLRRFFNEITKIIKLLQYLLDNNNYKEQCSN 497 Query: 421 VEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 K PQ + M++ +K + S+++ L K + ++++ Sbjct: 498 FFK----PQYFITNILDMVNKFNSQYKIVKVTETEYHVESIEKNIELSAIEKNL-DNIEI 552 Query: 481 KYAEETK-IKN-----LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTR 534 + EE K I+N + KH N Y IE+ S+ ++D D I +T + R Sbjct: 553 QLHEELKTIQNYSKTQVSFKHINKDIYQIEIDSNKFYSCRQD----DWEISSKTQKAI-R 607 Query: 535 F---TTLELID----LENRITNATNSALLIELES---FEILSNAIIEQSESLDNASQVIA 584 F TT +LI+ LE +I N + +ES F+I+ IE + Sbjct: 608 FYTKTTRKLIEEYKELEEKIFQTKNILVKQAVESLISFDIIIRETIE----------YVG 657 Query: 585 IIDISIALAILAKEQNYCRPIIDNSTNFI-VKDGRHPIVEKTLKQQSSKPFIANDCDLSC 643 ID ++ AI + +CRP +ST+ I + + +PI E +I ND Sbjct: 658 TIDCYLSYAIFNTKIEFCRPTFIDSTDGIEIINVVNPIFEN---------YITND---FV 705 Query: 644 PNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSA 703 P S + +LTGPNMGGKSTFLR L +I+ QMG +V A + + D +F+R+G+ Sbjct: 706 P----SHSISILTGPNMGGKSTFLRSLCLNIILCQMGLHVAAKKFCVPVFDNIFTRIGAN 761 Query: 704 DNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNR 763 D+L STFMVEM E + ILN AT +SFVI+DE+GRGT+ DG +IA + ++YL +T Sbjct: 762 DSLLKNESTFMVEMNECSKILNTATRRSFVIIDELGRGTSIRDGTAIAESVLKYL-QTIG 820 Query: 764 CRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAG 823 C L +TH+H L + + + ++ A + N I+F +K+ GI D+SYGI V KLAG Sbjct: 821 CFVLFSTHYHVLANQFQEVDKYSMAYDLI---NNQIVFKYKLSSGIVDNSYGIYVAKLAG 877 Query: 824 LPNTVISRAYDILKT 838 +P ++ RA +I KT Sbjct: 878 VPEKILQRAEEIKKT 892 >gi|13591999|ref|NP_112320.1| DNA mismatch repair protein Msh2 [Rattus norvegicus] gi|1709122|sp|P54275|MSH2_RAT RecName: Full=DNA mismatch repair protein Msh2; AltName: Full=MutS protein homolog 2 gi|1103621|emb|CAA63789.1| MSH2 protein [Rattus norvegicus] Length = 933 Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 174/579 (30%), Positives = 268/579 (46%), Gaps = 60/579 (10%) Query: 285 DIQSTLFIDSAARSNLEILRTLSGSRE-----QSLLKTIDYSITGAGGRLFAERIASPLT 339 D + +D AA + L GS E QSL ++ T G RL ++ I PL Sbjct: 295 DFSQYMKLDMAA---VRALNLFQGSVEDTTGSQSLAAFLNKCKTAQGQRLVSQWIKQPLM 351 Query: 340 DSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 D +I RL+ + F+++ L +Q+ +L+ PD+ R + + +D + G+ Sbjct: 352 DKNRIEERLNLVEAFVEDSELRRALQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGV 411 Query: 399 RSGINILNLFLK-NDLPEELRGAV---------EKLKKLPQSLEKTLSSMLSDDLPTFKR 448 + N++ K + L AV K + +E TL D+ + Sbjct: 412 KQLPNVIQALEKYQGRHQALLLAVFVTPLTDLRSDFSKFQEKIETTL------DMDQVEN 465 Query: 449 DGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEV 505 ++ D +L E R + D ++ + S + A + K +K+ + GY+ V Sbjct: 466 HEFLVKPSFDPNLSELREVMDGLEKKMQSTLISAARGLGLDPGKQIKLDSSAQFGYYFRV 525 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEIL 565 T VL+ + F N +FT EL L T +E Sbjct: 526 TCKEEKVLRNN----KNFSTVDIQKNGVKFTNSELSSLNEEYTKNKGE--------YEEA 573 Query: 566 SNAIIEQ--------SESLDNASQVIAIIDISIALAIL--AKEQNYCRPII--DNSTNFI 613 +AI+++ E + + V+A +D ++ A + A Y RP+I I Sbjct: 574 QDAIVKEIVNISSGYVEPMQTVNDVLAHLDAVVSFAHVSNAAPVPYVRPVILEKGKGRII 633 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 VK RH VE Q FI ND +K+ ++TGPNMGGKST++RQ +I Sbjct: 634 VKASRHACVEV----QHDVAFIPNDVHF----EKDKQMFHIITGPNMGGKSTYIRQTGVI 685 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 V+MAQ+G +VP A + IVD + +RVG+ D+ G STFM EM+ETASIL AT S + Sbjct: 686 VLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLI 745 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 I+DE+GRGT+T DG +AWA EY+ + ATHFHELT L+ + +N + Sbjct: 746 IIDELGRGTSTYDGFGLAWAISEYIATNIGAFCMFATHFHELTALASQIPTVNNLHVTAL 805 Query: 794 DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 + E + L++V G+ D S+GI V +LA P VI A Sbjct: 806 TTEETLTMLYQVKTGVCDQSFGIHVAELANFPRHVIECA 844 >gi|169767466|ref|XP_001818204.1| DNA mismatch repair protein msh-2 [Aspergillus oryzae RIB40] gi|238484337|ref|XP_002373407.1| DNA mismatch repair protein Msh2, putative [Aspergillus flavus NRRL3357] gi|83766059|dbj|BAE56202.1| unnamed protein product [Aspergillus oryzae] gi|220701457|gb|EED57795.1| DNA mismatch repair protein Msh2, putative [Aspergillus flavus NRRL3357] Length = 940 Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 196/656 (29%), Positives = 314/656 (47%), Gaps = 78/656 (11%) Query: 231 SISESRIADY------YNITTV----DTFGSFSQVE-KTAAAAAISYIKKTQMVNKPT-I 278 +ISE +ADY ++T + + G+ Q E K A +A + IK ++ PT Sbjct: 221 AISERPVADYGVKDIEQDLTRLLRDERSAGTLPQTELKLAMGSASALIKYLGVMTDPTNF 280 Query: 279 GYPE--REDIQSTLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIA 335 G + + D+ + +DS+A L ++ GS+ SL +++ T G RL A+ + Sbjct: 281 GQYQLYQHDLSQFMKLDSSALRALNLMPGPRDGSKSMSLFGLLNHCKTPVGSRLLAQWLK 340 Query: 336 SPLTDSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIA-V 393 PL D +I R + F+ N L +Q+ L+S PD+ R R + + +D+ V Sbjct: 341 QPLMDLAEIEKRQQLVEAFVVNTELRQTMQEEHLRSIPDLYRLAKRFQRKQANLEDVVRV 400 Query: 394 IRDGIR------SGINILNLFLKNDLPEE----LRGAVEKLKKLPQSLEKTLSSMLSDDL 443 + IR S N+++ + L E LR + L KL + +E T+ DL Sbjct: 401 YQVAIRLPGFVNSLENVMDEEYQTPLETEYTSNLRSHSDSLAKLEEMVETTV------DL 454 Query: 444 PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLG 500 + ++ D SL R D+ + + + A + K L ++++ G Sbjct: 455 DALENHEFIIKPEFDESLRIIRKKLDKLRHDMGVEHRRVARDLDQDIEKKLFLENHRVHG 514 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT------NATNSA 554 + +T + + ++ +K + T N FTT + L N T + Sbjct: 515 WCFRLTRNESGCIR----NKREYQECSTQKNGVYFTTSTMQTLRREHDQLSSNYNRTQTG 570 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDI--SIALAILAKEQNYCRPIID--NST 610 L+ E+ N L+ + VIA +D+ S A A + Y RP + + Sbjct: 571 LVNEV------VNVAASYCPVLERLAGVIAHLDVIVSFAHASVHAPTPYARPKMHPRGTG 624 Query: 611 NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 N ++K+ RHP +E Q FI ND L ++ ++TGPNMGGKST++RQ Sbjct: 625 NTVLKEARHPCME----MQDDISFITNDVALV----RDESSFLIITGPNMGGKSTYIRQI 676 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 +I +MAQ G +VP + A + I D + +RVG++D+ G STFM EM+ET++IL AT++ Sbjct: 677 GVIALMAQTGCFVPCTEAELTIFDCILARVGASDSQLKGVSTFMAEMLETSNILKSATSE 736 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLS----KSLKRFH 786 S +I+DE+GRGT+T DG +AWA E++ RC GL ATHFHELT L+ KS+K H Sbjct: 737 SLIIIDELGRGTSTYDGFGLAWAISEHIVTEIRCFGLFATHFHELTALADRYPKSVKNLH 796 Query: 787 NATL---QVSDSNEG-------IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 D +E + L++V PGI D S+GI V +L P V++ A Sbjct: 797 VVAFIGDGTDDDSEDKKSKRNQVTLLYRVEPGICDQSFGIHVAELVRFPEKVVNMA 852 >gi|190359866|sp|A6RPB6|MSH3_BOTFB RecName: Full=DNA mismatch repair protein msh3; AltName: Full=MutS protein homolog 3 Length = 1133 Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 244/917 (26%), Positives = 413/917 (45%), Gaps = 148/917 (16%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM-- 83 TPM Q I+IK + D+L+ +G ++ F +DA A++ L I GK + P Sbjct: 211 TPMELQVIDIKRKHMDTLLIVEVGYKFKFFGEDARTAAKVLSIVCIP-GKFRFDEHPSES 269 Query: 84 -------CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSL-VRRNVVRLVT 135 +PVH + ++L+ G++I I Q E+ K N++ R + + T Sbjct: 270 HLNYFASASIPVHRLPVHAKRLVAAGYKIGIVRQTETAALKKAGDNRNAPFVRKLTNVYT 329 Query: 136 PGTLTED-QLLSPTDS--------NYLMAVARIRTEWAIAWIDISTGIFKISTSNHD--- 183 GT +D L TD+ YL+ + + + + GI + + D Sbjct: 330 KGTYIDDIDGLDTTDAPSGGAPATGYLLCITETKAKGWGTDEKVEVGILAVQPATGDVIY 389 Query: 184 ----------RLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDH--- 230 L + ++ I P E++ EL+ A K + +++ + NVF D Sbjct: 390 DNFEDGFMRGELETRLLHIAPCELLIV-GELTKATDK----LVQHLSGSSTNVFGDRIRV 444 Query: 231 ----------SISESRIADYYNITTVDTFGSFSQ---------VEKTAAAAAISYIKKTQ 271 + S SR+A +Y D + +EK I + Sbjct: 445 ERVGKSKTMAAESYSRVAQFY----ADKLKAHQSSNNAREQELLEKVLKLTEPVTICLSA 500 Query: 272 MVNKPT----------IGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDY 320 M+ T Y + +S + ++ ++LEI + +++ SL T+D Sbjct: 501 MITHMTEYGLEHVFDLTKYFQSFSARSHMLLNGNTLTSLEIYTNQTDYTQKGSLFWTLDK 560 Query: 321 SITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQN---PIL--INPIQKILKSSPDVP 375 + T G RL + + PL D ++ R+ ++ N P + +N + ++S D+ Sbjct: 561 TQTKFGQRLLRKWVGRPLLDKQRLEERVAAVEELKDNANTPKVDKLNATLREVRS--DLE 618 Query: 376 RSLSRLKIGRG-EPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT 434 RSL R+ G+ P+ + V++ R ++ +D E E + LP E Sbjct: 619 RSLLRIYYGKCTRPELLTVLQTMQRIANEFAHVKTPSDAGFESIALNEAVASLPAIGEIV 678 Query: 435 LSSMLSDDLPTFKRD---GGFLRDGADASLDETRSLRD------------QSKRIIASLQ 479 +S + + + D FL ET ++ D ++ R++A+ + Sbjct: 679 ISFLDKINAQAARNDDKYAFFLEHY------ETEAIGDHKCGIGAVEQDLEAHRMVAATK 732 Query: 480 LKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLE 539 L +++T + + I + Y IEV ++ LK S + + MS RF T E Sbjct: 733 L--SKKTPVTYVTIA---GIEYLIEVPNTD---LKNVPASWAKISGTKKMS---RFHTPE 781 Query: 540 LIDL---ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILA 596 +I ++ + +SA +F LS + D S +A +D ++LA +A Sbjct: 782 VIKFLRERDQHKESLSSACDAAFSTF--LSEISTHYALIRDTISH-LATLDCLLSLATVA 838 Query: 597 KEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLT 656 YC+P +ST V GRHP+VE+ L +I ND LS D + LLT Sbjct: 839 SLPGYCKPTFTSSTEISVIGGRHPMVEQLLPSA----YIPNDTSLSTSPDHT--RALLLT 892 Query: 657 GPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVE 716 GPNMGGKS+++RQ ALI I+AQ+GSYVPA A +G++D +++R+G+ D+L + +STFMVE Sbjct: 893 GPNMGGKSSYVRQVALISILAQIGSYVPAESARLGLLDGIYTRMGAYDSLFTAQSTFMVE 952 Query: 717 MIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELT 776 + ETASIL A +S VILDE+GRGT+T DG++IA A ++++ +C L TH+ L Sbjct: 953 LSETASILKSAGPRSLVILDELGRGTSTHDGVAIAEAVLDWVVRETKCLCLFITHYQTLA 1012 Query: 777 DLSKSL---KRFHNATLQVS------------------DSNEGIIFLHKVIPGIADHSYG 815 +++ K N ++ + D +E I FL++V G+A SYG Sbjct: 1013 SVARGFEKGKELRNVHMKFTAERNGRRVSNADADKDNEDFDEEITFLYEVGEGVAHRSYG 1072 Query: 816 IQVGKLAGLPNTVISRA 832 + V +LA +P +V+ A Sbjct: 1073 LNVARLARVPKSVLDTA 1089 >gi|242767113|ref|XP_002341306.1| DNA mismatch repair protein Msh2, putative [Talaromyces stipitatus ATCC 10500] gi|218724502|gb|EED23919.1| DNA mismatch repair protein Msh2, putative [Talaromyces stipitatus ATCC 10500] Length = 944 Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 232/868 (26%), Positives = 399/868 (45%), Gaps = 112/868 (12%) Query: 35 IKSINPDSLVFYRMGDFYELFFDDALLASRCLGIT---LTKRGKHLGKDIPMCGVPVHTA 91 I NP ++ + GD+Y DA +R + T L G+ +P + V Sbjct: 28 INESNPTTIRLFDRGDWYTAHGTDAEFIARTVYKTTSVLRTLGRSDSGGLPSVTLSVTVF 87 Query: 92 NHYIQK-LIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL--TEDQLL--- 145 +++++ L ++ RI I ES K G ++ +PG L E++L Sbjct: 88 RNFLREALFRLNKRIEIWVSAESGRGQWKLGKQA----------SPGNLQDVEEELGGAG 137 Query: 146 -SPTDSNYLMAVARI--RTEWA----IAWIDISTGIFKIST-------SNHDRLISDIMR 191 S DS ++ ++ R+ A + + D S +S SN + L+ ++ Sbjct: 138 GSAMDSAPIILAVKVSARSSEAKNIGVCFADASVRELGVSEFLDNDVYSNFESLV---IQ 194 Query: 192 IDPREIIF----SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVD 247 + +E + S+K+ A+ +++ +T G +P F E + + Sbjct: 195 LGVKECVIQLDSSKKDAELAKLRAIADTCGIAITERPAADFGTRDIEQDLTRL--LRDER 252 Query: 248 TFGSFSQVE-KTAAAAAISYIKKTQMVNKPT-IGYPE--REDIQSTLFIDSAARSNLEIL 303 + + Q E K A AA S IK +++ T G + + D+ + +D++A L ++ Sbjct: 253 SAATLPQTELKLAMGAAASLIKYLGVMSDSTNFGQYQLYQHDLSQYMKLDASALRALNLM 312 Query: 304 -RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILIN 362 G++ SL +++ T G RL A+ + PL D +I R + F+ + L Sbjct: 313 PGPRDGAKNMSLYGLLNHCKTPVGSRLLAQWLKQPLMDQVEIEKRHQLVEAFVVDTELRQ 372 Query: 363 PIQK-ILKSSPDVPRSLSRLKIGRGEPKDI------AVIRDG-IRSGINILNLFLKNDLP 414 +Q+ L++ PD+ R R + + +D+ A+ G IRS NI++ + L Sbjct: 373 TMQEEHLRAIPDLYRLAKRFQRSQANLEDVVRVYQVAIRLPGFIRSFENIMDEQYQTPLD 432 Query: 415 EE----LRGAVEKLKKLPQSLEKTLSSMLSDD-----LPTFKRDGGFLRDGADASLDETR 465 ++ LR L L + +E T+ D+ P F +R LD+ R Sbjct: 433 DQYTTKLRNMSNSLANLEEMVETTVDLDALDNHEFIIKPEFDDSLRVIR----KKLDKLR 488 Query: 466 SLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIH 525 D R +A K + K L ++++ G+ +T + A ++ +K + Sbjct: 489 YDMDVEHRRVA----KDLNQDMEKKLFMENHRVHGWCFRLTRNEAGCIR----NKREYQE 540 Query: 526 RQTMSNLTRFTTLELIDLENRIT------NATNSALLIELESFEILSNAIIEQSESLDNA 579 T N FTT + +L N T S L+ E+ + ++EQ Sbjct: 541 CSTQKNGVYFTTRTMQELRREHDQLSSNYNRTQSGLVQEVVNVAASYCPVLEQ------L 594 Query: 580 SQVIAIIDISIALAILA--KEQNYCRPIID--NSTNFIVKDGRHPIVEKTLKQQSSKPFI 635 + +A +D+ ++ A ++ Y RP + + N I+K+ RHP +E Q FI Sbjct: 595 AGTLAHLDVIVSFAHVSVHAPTAYTRPKMHPRGTGNTILKEARHPCME----MQDDISFI 650 Query: 636 ANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDK 695 ND L ++ ++TGPNMGGKST++RQ +I +MAQ+G +VP + A + I D Sbjct: 651 TNDVSLL----RDVSSFLIITGPNMGGKSTYIRQIGVIALMAQIGCFVPCTEAELTIFDC 706 Query: 696 LFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATI 755 + +RVG++D+ G STFM EM+ET++IL AT++S +I+DE+GRGT+T DG +AWA Sbjct: 707 ILARVGASDSQLKGVSTFMAEMLETSNILKSATSESLIIIDELGRGTSTYDGFGLAWAIS 766 Query: 756 EYLHETNRCRGLLATHFHELTDLS----KSLKRFHNATLQVSDSNEG-------IIFLHK 804 E++ C GL ATHFHELT L+ K++K H + D+ EG + L++ Sbjct: 767 EHIVREIGCFGLFATHFHELTALADRYPKAVKNLHVVAF-IGDAKEGESSKKREVTLLYR 825 Query: 805 VIPGIADHSYGIQVGKLAGLPNTVISRA 832 V PG+ D S+GI V +L P V++ A Sbjct: 826 VEPGVCDQSFGIHVAELVRFPEKVVNMA 853 >gi|116203461|ref|XP_001227541.1| DNA mismatch repair protein msh-2 [Chaetomium globosum CBS 148.51] gi|88175742|gb|EAQ83210.1| DNA mismatch repair protein msh-2 [Chaetomium globosum CBS 148.51] Length = 942 Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 187/636 (29%), Positives = 313/636 (49%), Gaps = 80/636 (12%) Query: 257 KTAAAAAISYIKKTQMVNKPT-IGYPE--REDIQSTLFIDSAARSNLEIL-RTLSGSREQ 312 K A +A + I+ +++ P+ G + + D+ + +D+AA L ++ GS+ Sbjct: 254 KLAMGSAAALIQYLGVLHDPSNFGQYQLYQHDLAQFMKLDAAALKALNLMPGARDGSKTM 313 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK-ILKSS 371 SL +++ T G RL A+ + PL D +I R + F + L +Q+ L+S Sbjct: 314 SLFGLLNHCKTPVGSRLLAQWLKQPLMDKNEIEKRQQLVEAFANDTELRQTMQEEHLRSI 373 Query: 372 PDVPRSLSRLKIGRGEPKDI-----AVIR-DGIRSGI-NILNLFLKNDLPE----ELRGA 420 PD+ R R + + +D+ AVIR G + +++ ++ L E +LR Sbjct: 374 PDLYRLAKRFQRKKANLEDVVRAYQAVIRLPGFLGTLEGVMDETYRDPLDEAYTNKLREL 433 Query: 421 VEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 + L KL + +E T+ DL ++ D SL R +R + R+ + + Sbjct: 434 SDSLVKLQEMVETTV------DLDALDNHEFIIKPEFDDSL---RIIRKRLDRLRSEMDR 484 Query: 481 KYAE------ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTR 534 ++A+ + + K + ++++ G+ + +T + A +++ K R+ T N Sbjct: 485 EFADAASDLGQERDKKIFLENHKVHGWCMRLTRTEAGCIRQ----KSRYQECSTQKNGVY 540 Query: 535 FTTLEL------IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDI 588 FTT L D ++ N T S L+ E+ + ++E+ V+A +D+ Sbjct: 541 FTTKTLQGYRREFDQLSQNYNRTQSGLVNEVVGVASSYSPVLEK------LGGVLAHLDV 594 Query: 589 SIALAILAKEQ--NYCRPIID--NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 ++LA + +Y RP I ++ + RHP +E Q FI ND +L+ Sbjct: 595 IVSLAHCSVHAPISYVRPTIHPRGEGQTVLVEARHPCLE----MQDDVQFITNDVELT-- 648 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 DK+S ++TGPNMGGKST++RQ +I +MAQ+G +VP S A + I D + +RVG++D Sbjct: 649 RDKSS--FLIITGPNMGGKSTYIRQIGVIALMAQIGCFVPCSSAELTIFDSILARVGASD 706 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 + G STFM EM+ETA+IL AT +S +I+DE+GRGT+T DG +AWA E++ + C Sbjct: 707 SQLKGVSTFMAEMLETANILKSATAESLIIIDELGRGTSTYDGFGLAWAISEHIVKEIGC 766 Query: 765 RGLLATHFHELTDLSKSLKRFHN--ATLQVS----------------DSNEGIIFLHKVI 806 L ATHFHELT L+ + N T +S D + L+KV Sbjct: 767 SALFATHFHELTALADQYPQVRNLHVTAHISGSSSAATAEKKKQKAEDEKREVTLLYKVE 826 Query: 807 PGIADHSYGIQVGKLAGLPNTVI---SRAYDILKTF 839 PG+ D S+GI V +L P+ V+ R D L+ F Sbjct: 827 PGVCDQSFGIHVAELVRFPDKVVRMAKRKADELEDF 862 >gi|322706947|gb|EFY98526.1| DNA mismatch repair protein msh3 [Metarhizium anisopliae ARSEF 23] Length = 1101 Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 233/883 (26%), Positives = 412/883 (46%), Gaps = 101/883 (11%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK---------- 75 TPM Q+++IK + D+++ +G + F +DA A++ LGI GK Sbjct: 200 TPMEIQFLDIKRKHLDTILIVEVGYKFRFFGEDARTAAKELGIVCIP-GKMRYDEHPSEA 258 Query: 76 HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSL-VRRNVVRLV 134 HL + VPVH + + ++L+ GH++ + QIE+ K N++ R + + Sbjct: 259 HLDR-FASASVPVHRLSVHAKRLVAAGHKVGVVRQIETAALKKAGDNRNTPFVRKLTNVY 317 Query: 135 TPGTLTE-----DQLLSPTDSN-YLMAVARIRTEWAIAWIDISTGIFKISTSN----HDR 184 T GT + DQ + YL+ + +++ + + GI + + HD Sbjct: 318 TKGTYIDEVGELDQRAEGAPAGGYLLCITETKSKGSGTDEKVDVGILAVQPATGDIIHDN 377 Query: 185 LISDIMRIDPREIIFSEKELSHAEY-------KSLFETLGNVAVAQPNVFFDHSISE--- 234 MR EI +S E+ K + + +++ + NVF D S E Sbjct: 378 FEDGFMR---SEIETRLLHISPCEFLIVGDLTKGTDKLVQHLSGSSTNVFGDRSRVERVP 434 Query: 235 ---SRIADYYNITT---VDTFGSFSQVEKTAA----------------AAAISYIKKTQM 272 + A+ Y+ T D SQ E +A +A I+++K+ + Sbjct: 435 RPPTMAAEAYSHVTQFYADKLKDTSQNETASALLDKVLKLPEPVTICLSAMINHLKEYGL 494 Query: 273 VNKPTI-GYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSITGAGGRLF 330 + + Y + +S + ++ +LE+ R + E+ SL +D ++T G RL Sbjct: 495 EHIFDLTKYFQSFTTRSHMLVNGTTLESLEVYRNSTDHAERGSLFWALDKTLTRFGQRLL 554 Query: 331 AERIASPLTDSTKINTRLDSINFFI--QNPILINPIQKILKSSP-DVPRSLSRLKIGRG- 386 + + PL D +++ RL ++ + Q+ ++ ++K+L ++ D+ RSL R+ G+ Sbjct: 555 RKWVGRPLLDQDRLDERLAAVEELLNKQSTAPVDDLEKLLATTKTDLERSLIRIYYGKCT 614 Query: 387 EPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTF 446 P+ ++V+ + + ++ + P + LPQ L +S + +L Sbjct: 615 RPELLSVLHTLQKIATHYSSIKSPSGNPFSSPLLATSINALPQILNTVVSYLERINLEAA 674 Query: 447 KRDG--GFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN------- 497 ++D F R+ +T ++DQ + IA ++ + E K+ K+K Sbjct: 675 RKDDKYAFFREDY-----QTEDIQDQ-QMGIAHVEHELGEHLKVAAAKLKKKKVDYVTVA 728 Query: 498 NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI 557 + + IEV +S +K S + ++RF T E++ + + + Sbjct: 729 GIEFLIEVPNSD---IKNVPASWSKI---SGTKKVSRFHTPEVMRMISERDQHREALAAA 782 Query: 558 ELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN---FIV 614 ++F+ L I + L +A +A +D ++L+ +A + Y +P S++ + Sbjct: 783 CDKAFKDLLAEISSDYQPLRDAVSSLASLDCLLSLSKVAAQPGYNKPTFLPSSSEPTVAI 842 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 GRHPI E T++ +I L+ P S L+TGPNMGGKS+++R ALIV Sbjct: 843 TQGRHPIAEHTIESG----YIPFSTTLAHP----SPLAHLITGPNMGGKSSYVRALALIV 894 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 ++AQ+GS+VPA + + D + +R G+ DNL +G STFMVE+ ETA IL AT +S VI Sbjct: 895 LLAQIGSFVPADAISLTLCDAIHTRTGARDNLFAGESTFMVEVSETARILRSATPRSLVI 954 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS- 793 LDE+GRGT+T DG +IA A +E++ RC L TH+ L + + L N ++ Sbjct: 955 LDELGRGTSTHDGAAIAQAVLEHVATETRCLTLFITHYQNLARVVEGLPGVSNLHMRFKA 1014 Query: 794 ----DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 D +E I FL++V G+A SYG+ V +LA +P VI A Sbjct: 1015 GKGPDGDEEITFLYEVGEGVAHRSYGLNVARLARIPKKVIDVA 1057 >gi|169612762|ref|XP_001799798.1| hypothetical protein SNOG_09508 [Phaeosphaeria nodorum SN15] gi|160702578|gb|EAT82773.2| hypothetical protein SNOG_09508 [Phaeosphaeria nodorum SN15] Length = 1234 Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 189/647 (29%), Positives = 313/647 (48%), Gaps = 73/647 (11%) Query: 247 DTFGSFSQVE-KTAAAAAISYIKKTQ-MVNKPTIGYPE--REDIQSTLFIDSAARSNLEI 302 D G+ Q++ K A AA I+ M + G + + D+ + +D+AA L + Sbjct: 237 DEAGTLPQMDLKLAMGAASCLIRYLGLMSDSSNFGQYQLYQHDLSQYMKLDAAALKALNL 296 Query: 303 L-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILI 361 + G++ SL +++ T G RL A+ + PL + +I R + F+ + L Sbjct: 297 MPGPRDGAKNMSLYGLLNHCKTPTGSRLLAQWLKQPLMNVAEIERRQQLVEAFVNDTELR 356 Query: 362 NPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL--FL--------- 409 +Q+ L+S PD+ R + + + +A + D +R+ I+ L FL Sbjct: 357 QTMQEEHLRSIPDLYRLSKKFQ------RKVANLEDVVRAYQVIIRLPGFLSSLESVMDE 410 Query: 410 --KNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSL 467 K+ L E + + L++ + + + DL ++ D +L R Sbjct: 411 KYKDPLDAEYTDKLRQFSAAFGGLQEMVETTV--DLDALDNHEFIIKPEFDEALRTIRKR 468 Query: 468 RDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 D+ KR + S + ++ K L ++++ G+ +T + + +++ K ++ Sbjct: 469 LDKLKRDMESEHARVGDDLNQDTEKKLFLENHKVHGWCFRLTRNESGAIRQ----KKQYQ 524 Query: 525 HRQTMSNLTRFTTLELIDLENRIT------NATNSALLIELESFEILSNAIIEQSESLDN 578 QT N FTT L D N T S L+ E+ S ++++ + E L Sbjct: 525 EIQTQKNGVYFTTSTLQDKRREFDQMSENYNRTQSGLVNEVVS---VASSYVPVVEKL-- 579 Query: 579 ASQVIAIIDISIALAILA--KEQNYCRPIID--NSTNFIVKDGRHPIVEKTLKQQSSKPF 634 + V+A +D+ +A A ++ +Y RP + + N I+K+ RHP +E QQ F Sbjct: 580 -AAVLAHLDVIVAFAHVSVHAPTSYTRPKMHARGTGNTILKEARHPCME----QQDDISF 634 Query: 635 IANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVD 694 I ND L + + ++TGPNMGGKSTF+RQ +I +MAQ+G +VPA+ A + I D Sbjct: 635 ITNDISLK----RGESEFLIITGPNMGGKSTFIRQTGVIALMAQIGCFVPAAEAELTIFD 690 Query: 695 KLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWAT 754 + +RVG++D+ G STFM EM+ETA+IL AT +S +I+DE+GRGT+T DG +AWA Sbjct: 691 CILARVGASDSSIKGVSTFMAEMLETANILKSATKESLIIIDELGRGTSTYDGFGLAWAI 750 Query: 755 IEYLHETNRCRGLLATHFHELTDLSKSLKRFHN--ATLQVSDSNE----------GIIFL 802 EY+ + L ATHFHELT LS + + N +S+ E + L Sbjct: 751 SEYIVKEIGAFALFATHFHELTALSNTYPQVENLHVVAHISEGTEETDSGVQKKREVTLL 810 Query: 803 HKVIPGIADHSYGIQVGKLAGLPNTVIS---RAYDILKTFEKLYHHN 846 +KV PG +D S+GI V +L P VI+ R D L+ F + N Sbjct: 811 YKVEPGFSDQSFGIHVAELVRFPQKVINMAKRKADELEDFSGKHEDN 857 >gi|66819479|ref|XP_643399.1| hypothetical protein DDB_G0275809 [Dictyostelium discoideum AX4] gi|74897320|sp|Q553L4|MSH2_DICDI RecName: Full=DNA mismatch repair protein Msh2; AltName: Full=MutS protein homolog 2 gi|60471699|gb|EAL69655.1| hypothetical protein DDB_G0275809 [Dictyostelium discoideum AX4] Length = 937 Score = 227 bits (578), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 190/626 (30%), Positives = 299/626 (47%), Gaps = 71/626 (11%) Query: 309 SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQ-KI 367 +++QSL ++ T G RL + + PL ++ +I RL+ + F + L ++ Sbjct: 355 NKDQSLYNLLNQCNTPMGSRLLLQWVKQPLLNAEEIEARLNFVEAFYNDLELRQSLRSND 414 Query: 368 LKSSPDVPRSLSRLKIGRGEPKD----------IAVIRDGIRSGINILNLFLKNDLPEEL 417 LK D+ R +L + +D + V+ + + +I +K + E L Sbjct: 415 LKKIGDLDRLSKKLHGQKATLEDCVNLYGIVTRLPVVLQSLNNHSSIHQELIKVNFIESL 474 Query: 418 RGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIAS 477 + K +EKT+ L++D + +R D +L + +DQ I Sbjct: 475 ESIISDFAKFCAMVEKTIDLDLANDKHEY-----VIRSSFDETLRGIQLKKDQISNKIER 529 Query: 478 LQLKYAEETKIKNLKIK-HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFT 536 ++ A++ + K+K H + F+ S V +D K ++I T + RF Sbjct: 530 FRVDIADDLNLDEAKVKLHYSEKDMFLLRISRKDEVAIRD---KKKYIVHATAKDGVRFA 586 Query: 537 TLELIDLENRITNATNSALLIELESFEILSNAIIEQSES----LDNASQVIAIIDISIAL 592 T E ID N ++ L + + L+ ++ + S +++ S +IA +D+ + L Sbjct: 587 TRE-IDTLNEAYKKWSAEYLDKQDG---LAKRTLQIAASFVPLIEDLSSLIATLDVFVTL 642 Query: 593 AILAKEQN--YCRPII------DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 + ++ + RP I +N ++ GRHP VE Q + FIAND DL+ Sbjct: 643 SHVSSIAPIPFIRPEIIPLGSDENGAGTVIIGGRHPCVEI----QDNVNFIANDIDLT-- 696 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 + + ++TGPNMGGKSTF+RQ LIV+MAQ+G +VPA A I +VD + SRVG+ D Sbjct: 697 --RGQSQFQIITGPNMGGKSTFIRQVGLIVLMAQIGCFVPAQKATIAVVDCILSRVGAGD 754 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 + G STFM EM+ET+ IL AT S +I+DE+GRGT+T DG +AW EY+ N+ Sbjct: 755 SQLRGVSTFMAEMLETSYILKVATKNSLIIIDELGRGTSTYDGFGLAWGIAEYI--CNQI 812 Query: 765 RG--LLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLA 822 G L ATHFHELT LS L N + S N L+KV G D S+GI V LA Sbjct: 813 GGFCLFATHFHELTILSDLLPMVKNLHVSASTQNNTFTLLYKVEQGPCDQSFGIHVAILA 872 Query: 823 GLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNL 882 P+ VI A K E+++ ES N L +N F+E+ K +N Sbjct: 873 NFPSQVIENAKQKAK------------------ELESFES-NTLKQNHNKFLEEFKEINF 913 Query: 883 DEMSPLTALKTLYAVKAWTLEKYSTD 908 + +L + ++ L KYS D Sbjct: 914 NSNDVEKSLSLVNSL----LNKYSID 935 >gi|119195125|ref|XP_001248166.1| hypothetical protein CIMG_01937 [Coccidioides immitis RS] Length = 941 Score = 227 bits (578), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 235/863 (27%), Positives = 401/863 (46%), Gaps = 116/863 (13%) Query: 44 VFYRMGDFYELFFDDALLASRCLGIT---LTKRGKHLGKDIPMCGVPVHTANHYIQK-LI 99 VF R GD+Y DA +R + T L G+ +P + V +++++ L Sbjct: 33 VFDR-GDWYTAHGTDAEYIARTVYKTTSVLRTLGRSDTSGLPSVTMTVTVFRNFLREALF 91 Query: 100 KIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL--TEDQLLSP---TDSNYLM 154 ++G RI +I S +G LV++ +PG L ED+L S D+ ++ Sbjct: 92 RLGKRI----EIWSSQGGMGKGVWKLVKQ-----ASPGNLQDVEDELGSGGGMMDTAPII 142 Query: 155 AVARIRTEWA------IAWIDISTGIFKISTSNHDRLISD----IMRIDPREIIFS---- 200 +I + + + D S +S + + L S+ ++++ +E + + Sbjct: 143 LAVKISARASETRHVGVCFADASVRELGVSEFDDNDLYSNFESLVIQLGVKECLVTTDGQ 202 Query: 201 EKELSHAEYKSLFETLGNVAVAQP-NVFFDHSISE--SRIADYYNITTVDTFGSFSQVE- 256 +K++ A+ +S+ ++ G ++P + F I + SR+ + T G+ Q + Sbjct: 203 KKDVELAKIRSIADSCGIAISSRPASDFHTRDIDQDLSRL-----LKDERTAGTLPQTDL 257 Query: 257 KTAAAAAISYIKKTQMVNKPT-IGYPE--REDIQSTLFIDSAARSNLEIL-RTLSGSREQ 312 K A AA + IK ++ P+ G + + D+ + +DSAA L ++ G + Sbjct: 258 KLAMGAAAALIKYLGAMSDPSNFGQYQLYQHDLSQYMKLDSAALRALNLMPGPRDGVKSM 317 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK-ILKSS 371 SL +++ T GGRL A+ + PL + I R + F+ + L +Q+ L+S Sbjct: 318 SLYGLLNHCKTPVGGRLLAQWLKQPLMNHEDIEKRQQLVEAFVSDTELRQTMQEDHLRSI 377 Query: 372 PDVPRSLSRLKIGRGEPKDIA-----VIRDGIRSGINILNLFLKNDLPEELRGA-VEKLK 425 PD+ R + + +D+ VIR + IN L + E L K++ Sbjct: 378 PDLYRLAKKFQRNAATLEDVVRIYQVVIR--LPGFINTLEAVMDEQYQEPLEEEYTSKIR 435 Query: 426 KLPQSLEKTLSSMLSD--DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 L S K L+ M+ DL ++ D SL R +R + ++ + +A Sbjct: 436 NLSNSFGK-LAEMVETTVDLEALDHHEFIIKPEFDESL---RIIRKKLDKLRYDM---HA 488 Query: 484 EETKI---------KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTR 534 E ++ K L ++ + G+ +T + A ++ +K + T N Sbjct: 489 EHRRVGRDLNQDTEKKLFLEDHRVHGWCFRLTRNEAGCIR----NKREYQECSTQKNGVY 544 Query: 535 FTTLELIDLE------NRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDI 588 FTT + L ++ N T + L+ E+ + ++EQ + V+A +D+ Sbjct: 545 FTTSTMQSLRREHDQLSQNYNRTQTGLVNEVVNVATSYCPLLEQ------LAGVLAHLDV 598 Query: 589 SIALAILA--KEQNYCRPIID--NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 ++ A ++ Y RP + + N I+K+ RHP +E Q FI ND L Sbjct: 599 IVSFAHVSVHAPTPYVRPKVHPRGTGNTILKEARHPCME----MQDDISFITNDVSLV-- 652 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 +N ++TGPNMGGKST++RQ ++ +MAQ G +VP S A + I D + +RVG++D Sbjct: 653 --RNESSFLIITGPNMGGKSTYIRQIGVVALMAQTGCFVPCSEAELTIFDCILARVGASD 710 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 + G STFM EM+ETA+IL AT++S +I+DE+GRGT+T DG +AWA E++ RC Sbjct: 711 SQLKGVSTFMAEMLETANILKTATSESLIIIDELGRGTSTYDGFGLAWAISEHIITEIRC 770 Query: 765 RGLLATHFHELTDLSK----SLKRFHNATL---QVSDSNEG--------IIFLHKVIPGI 809 GL ATHFHELT L + S+K H VSD + L++V PG+ Sbjct: 771 FGLFATHFHELTALEERYPNSVKNLHVVAFIGDNVSDKQNNTASKKKREVTLLYRVEPGV 830 Query: 810 ADHSYGIQVGKLAGLPNTVISRA 832 D S+GI V +L P V++ A Sbjct: 831 CDQSFGIHVAELVRFPEKVVNMA 853 >gi|261883704|ref|ZP_06007743.1| DNA mismatch repair protein MutS [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 213 Score = 227 bits (578), Expect = 8e-57, Method: Composition-based stats. Identities = 99/198 (50%), Positives = 146/198 (73%), Gaps = 2/198 (1%) Query: 83 MCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 MCGVPVH A+ Y+QKLI G+R+A+CEQ+E P EAKKRG+KS+V+R+V+RLVTPGTLTE+ Sbjct: 1 MCGVPVHAADDYLQKLIAKGYRVAVCEQVEDPAEAKKRGSKSVVKRDVIRLVTPGTLTEE 60 Query: 143 QLLSPTDSNYLMAVARIRTEWAIA--WIDISTGIFKISTSNHDRLISDIMRIDPREIIFS 200 +LL P +N+LMA+ R R + A+A WIDISTG F+++ + DRL +DIMR+DPRE++ + Sbjct: 61 KLLDPAQANFLMAMGRTRGDGALALVWIDISTGTFRVAETTPDRLFADIMRVDPRELVVA 120 Query: 201 EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAA 260 + E + +F+ +G QP FD + +++RI Y+N+ T+D FG FS+ E +A Sbjct: 121 DSAFHDEELRPVFDLIGKAVTPQPATLFDSAAAQTRIQHYFNVATLDGFGQFSRPELSAI 180 Query: 261 AAAISYIKKTQMVNKPTI 278 + AI+YI+KTQ+ +P + Sbjct: 181 SGAIAYIEKTQISERPPL 198 >gi|183234797|ref|XP_652571.2| DNA mismatch repair protein Msh2 [Entamoeba histolytica HM-1:IMSS] gi|169800906|gb|EAL47185.2| DNA mismatch repair protein Msh2, putative [Entamoeba histolytica HM-1:IMSS] Length = 630 Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 172/552 (31%), Positives = 264/552 (47%), Gaps = 45/552 (8%) Query: 300 LEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP- 358 +E L +E +L K ++ + T G ++ E I PL D KIN RL+ + F N Sbjct: 17 IEGLHLFGDKKEMTLFKHLNRTHTKIGEKMIKEWIKQPLIDKDKINKRLELVEGFYDNSG 76 Query: 359 ILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELR 418 I + + L PD+ + + I + + + I + + +R NI K +L E Sbjct: 77 IRLKIKNEELAIIPDLEKLIK--GINKSDLESIVKLYEAVRISKNI-----KEELKEMNN 129 Query: 419 GAVEK-----LKKLPQSLEK------TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSL 467 ++EK L+K+ + +EK TL + FK +R+ D L + R Sbjct: 130 KSIEKEIIEPLEKITEEMEKFEEMVVTLIDIEETQNHVFK-----IREDFDEGLQKIRES 184 Query: 468 RDQSKRIIASLQLKYAEETKIKNLKIK---HNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 + + + + A + IK KIK HNNNL + V+ S+ +K ++ Sbjct: 185 HKKVEELFEKCLEQAANDLNIKTDKIKIVEHNNNL--ILRVSKSNEKEVK----KNKKYT 238 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 QT+ +FT E+ L + I + E ++ + E +I Sbjct: 239 IIQTLKGECKFTFKEMQTLNVKRDKLKLKEEEINKKFIEEINKVVEGYKEKFQELENMIG 298 Query: 585 IIDI--SIALAILAKEQNYCRPIIDNSTNFIVK--DGRHPIVEKTLKQQSSKPFIANDCD 640 ID S A + Q Y +P I S I+K RHP++E S FI ND D Sbjct: 299 YIDCIQSFATVSIDNNQGYSKPTIYESEKGIIKIIKARHPLIE----NNSINSFIENDID 354 Query: 641 LSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRV 700 + D+ + ++TGPNMGGKST+LR L VIMAQ+G +VP S AHI I DK+ R+ Sbjct: 355 I----DRKETRFQIITGPNMGGKSTYLRMIGLCVIMAQIGMFVPCSEAHISICDKIMCRI 410 Query: 701 GSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHE 760 G+ DN+ G STFM EM +T+ I+ ++T S V++DE+GRGT+T DG IAWA EYL Sbjct: 411 GAGDNIVEGMSTFMSEMKDTSEIIKKSTKNSLVLIDELGRGTSTYDGFGIAWAISEYLAI 470 Query: 761 TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGK 820 C + ATHFHE+T L K + N ++ ++ ++ +K+ G D S I V + Sbjct: 471 DIGCYCVFATHFHEITGLEKRVTGVINKHVEADIIDKQLVLKYKINNGSTDQSLAIYVAE 530 Query: 821 LAGLPNTVISRA 832 A P+ V+ A Sbjct: 531 WADFPHEVVESA 542 >gi|1079288|pir||S53609 DNA mismatch repair protein MSH2 - African clawed frog Length = 933 Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 189/646 (29%), Positives = 303/646 (46%), Gaps = 84/646 (13%) Query: 285 DIQSTLFIDSAARSNLEILRTLSGSRE-----QSLLKTIDYSITGAGGRLFAERIASPLT 339 D+ + +D+AA L + GS E QSL ++ T G RL + I PL Sbjct: 294 DLSQYMKLDNAAVGALNLF---PGSAEDTSGTQSLAGLLNKCKTPQGQRLVNQWIKQPLM 350 Query: 340 DSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 D ++ RL+ + F+ + L +Q+ +L+ PD+ R + + + A ++D Sbjct: 351 DKNRVEERLNLVEAFVMDVELRQCLQEDLLRRFPDLNRLAKKFQ------RQTANLQDCY 404 Query: 399 RSGINILNLFLKNDLPEELRGAVEKLKKLPQSL-----EKTLSSMLSD------------ 441 R + N LP ++ A+EK + Q L LS + SD Sbjct: 405 RLYQAV------NHLPTVVQ-AIEKYEGTHQMLLLAVFATPLSDLSSDFSKFQEMIETTL 457 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNN 498 D+ + ++ D +L E R D+ ++ + A E + K++K++ N+ Sbjct: 458 DMDQVENHEFLVKASFDPNLTELREKMDELEKNMQGALGGAARELGLDAGKSIKLESNSQ 517 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 +G++ VT L+ N +FTT+++ R TN+ S+L E Sbjct: 518 IGHYFRVTCKEEKALR----------------NNKKFTTIDIQKNGVRFTNSKLSSLSEE 561 Query: 559 L----ESFEILSNAIIEQ--------SESLDNASQVIAIIDISIALAILAKEQN--YCRP 604 E +E NAI+++ + + + VIA +D ++ A ++ Y RP Sbjct: 562 YMRNREEYEEAQNAIVKEIITISAGYVDPIQTLNDVIAQLDAVVSFAHVSNSAPVPYVRP 621 Query: 605 II--DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 +I ++ RHP +E Q FI ND +K ++TGPNMGG Sbjct: 622 VILEKGQGRIVLHSARHPCIE----MQDDVAFIPNDITF----EKEKQMFHIITGPNMGG 673 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ +IV+MAQ+G +VP A + IVD + +RVG+ D+ G STFM EM+ETAS Sbjct: 674 KSTYIRQTGVIVLMAQIGCFVPCDSAQVSIVDCILARVGAGDSQLKGVSTFMAEMLETAS 733 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL AT S +I+DE+GRGT+T DG +AWA EY+ + + ATHFHELT L+ + Sbjct: 734 ILRSATENSLIIIDELGRGTSTYDGFGLAWAISEYISTKIKAFCMFATHFHELTALADQV 793 Query: 783 KRFHNATLQVSDSNEGII-FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 +N + + + +I L+++ G+ D S+GI V +LA P VI A + E+ Sbjct: 794 PTVNNLHVTALTTEDTLITMLYRIKKGVCDQSFGIHVAELANFPKHVIETAKEKALELEE 853 Query: 842 L-YHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMS 886 Y N D + E K K + F+ ++K L L EMS Sbjct: 854 FQYVGNPDDCDDEPARKRRCEEKEEGEKIIQDFLSRVKALPLTEMS 899 >gi|260943291|ref|XP_002615944.1| hypothetical protein CLUG_04826 [Clavispora lusitaniae ATCC 42720] gi|238851234|gb|EEQ40698.1| hypothetical protein CLUG_04826 [Clavispora lusitaniae ATCC 42720] Length = 1320 Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 220/885 (24%), Positives = 388/885 (43%), Gaps = 88/885 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 T +QY EIK D++VF++ G FYEL+ +DA +A+ + + G+ ++ + G Sbjct: 422 TAFEKQYWEIKGKMWDTVVFFKKGKFYELYENDATIANTEFDLKIAGGGR---ANMKLAG 478 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKS----LVRRNVVRLVTPGTLTE 141 +P + ++ ++ I G+++A +Q+ES L + RG S ++RR + ++T GTLT+ Sbjct: 479 IPEMSFEYWAKEFISHGYKVAKVDQVESLLAKEMRGGGSKEEKIIRRELTGVLTGGTLTD 538 Query: 142 DQLLSPTDSNYLMAVARIRTE-----WAIAWIDISTG----IFKISTSNHDRLISDIMRI 192 ++S + Y +A+ T+ + ++D +T I + +L + I +I Sbjct: 539 LDMISDDMATYCLAIKESTTQEGEKVFGACFVDTATSEMNFIELVDDDECTKLDTLITQI 598 Query: 193 DPREIIFSEKELSHAEYKSLFETLGNVAVAQPNV-----FFDHSISESRI--ADYYNITT 245 P+EI+ + L K + N N+ F+D+ + + YY Sbjct: 599 KPKEILCEKNNLCSTATKIIKFNAHNSHQIWNNLNPYSEFWDYDTAVENLVKGKYYEAED 658 Query: 246 VDTFGSFSQV---------EKTAAAAAISYIKKTQMVNKPTIG------YPEREDIQSTL 290 +D + + V A A+ Y +T +++ + Y ++ + Sbjct: 659 LDDYAKYPPVLLKYKDNHPVAFNAFGALLYYLRTLKLDESIMSLGNIKEYHISKNSSKHM 718 Query: 291 FIDSAARSNLEILRT-LSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLD 349 +D +NLE+ G +L K ++ +IT G R PL IN R D Sbjct: 719 LLDGITLTNLEMFNNNFDGGDRGTLFKLVNRAITPFGKRTLKNWTLHPLMQIDDINARYD 778 Query: 350 SINFFIQN-PILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF 408 +I+F + + P L ++ L S D+ R ++R+ + KD + +G S + Sbjct: 779 AIDFLMNDEPELRVEMESSLSSLSDLERLIARVHSKTLKFKDFLKVLEGFESISKLFKSA 838 Query: 409 LKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGF-----LRDGADASLDE 463 DL E GA L K S L +++ F R G D DE Sbjct: 839 SNYDL--EKAGA---LGKFVSSFPSELHNLIESWEDAFDRREALNNIVVPATGVDVEFDE 893 Query: 464 TRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRF 523 + + + + + Y ++ K + + + + IE+ ++ K + Sbjct: 894 SMATLNSLEGQLNEHLKAYKKQFKSHEICYRDSGKELFLIEMPIKIKNIPKD-------W 946 Query: 524 IHRQTMSNLTRFTTLELIDL-----ENRITNATNSALLIE--LESFEILSNAIIEQSESL 576 S + R+ + E+ L E + + T LI F++ ++ +++ Sbjct: 947 QQMAATSKVKRYWSPEVKKLVRELMEQKELHKTVCENLISRMYSRFDVNYKTWVQVIKTV 1006 Query: 577 DNASQVIAIIDISIALAILAKEQNYCRP--IIDNSTNFIVKDGRHPIVEKTLKQQSSKPF 634 N +IA+ S + + CRP + S + RHP + F Sbjct: 1007 GNIDCLIALTKTSETIGYPS-----CRPKFVSGTSGALSFSELRHPCF------VGANDF 1055 Query: 635 IANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVD 694 I ND L LLTG N GKST +R AL VI++Q+G Y+PAS A + +D Sbjct: 1056 IPNDVKLG----GEYANFGLLTGANAAGKSTLMRTTALAVILSQIGCYLPASEAVLTPID 1111 Query: 695 KLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWAT 754 K+ +R+G+ DN+ G+STF VE+ ET IL+ AT+ S VILDE+GRG ++ DG +IA + Sbjct: 1112 KIMTRLGANDNIMQGKSTFFVELSETKKILSNATSNSLVILDELGRGGSSSDGYAIAESV 1171 Query: 755 IEYLHETNRCRGLLATHFHE--LTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADH 812 + +L + G ATH+ L+ ++ R + V ++ I FL+K+ G A Sbjct: 1172 LHHLASHVQPLGFFATHYGSLGLSFINHPQIRPLRMGIVVDQTSRNITFLYKLEDGCAPG 1231 Query: 813 SYGIQVGKLAGLPNTVISRAYDILKTFE-----KLYHHNQKDMRL 852 S+G+ V + G+P ++ +A K +E K H QK RL Sbjct: 1232 SFGMNVAAMCGIPTEIVEKAEGAAKEYEQTSKLKDMHEKQKTQRL 1276 >gi|195164888|ref|XP_002023278.1| GL21272 [Drosophila persimilis] gi|194105363|gb|EDW27406.1| GL21272 [Drosophila persimilis] Length = 887 Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 174/609 (28%), Positives = 294/609 (48%), Gaps = 66/609 (10%) Query: 267 IKKTQMVNKP-TIGYPE--REDIQSTLFIDSAARSNLEILR------TLSGSREQSLLKT 317 IK +VN +G+ E + D++ + +DSAA L I+ ++ R QS+L Sbjct: 269 IKYLDLVNDAGNLGHYEIKQLDLKRFVHLDSAAVGALNIMPKPGTHPSMPSYRWQSILGV 328 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQ-KILKSSPDVPR 376 +D+ T G RL + + PL +N R + + +++ + + LK PD+ Sbjct: 329 LDHCRTPQGHRLMGKWVKQPLRSQEILNDRHNIVECLLESSDTLESLSLDYLKRIPDILM 388 Query: 377 SLSRLKIGRGEPKDIAVIRDGIRSGINILNLFL--KNDLPEEL-----RGAVEKLKKLPQ 429 +L + +D+ I I I+ + L +N E + + +E L L Q Sbjct: 389 LTKKLMRRKATLQDLFRIYQVILRTPKIVQVLLSLENSTVESVICSPFKSFLEDLTGLKQ 448 Query: 430 SLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIK 489 +E+ + D +R ++ D+ L E + ++ K++ Sbjct: 449 MVEQVV------DFEAIERGEYLVKSSFDSRLMELQQTMNELY-------------DKME 489 Query: 490 NLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN 549 LK K N+ L DL+SK + + RFT+ +L + + Sbjct: 490 RLKSKCNDEL----------------DLDSKQIKLGEYVIKGGVRFTSDKLEGYADEFAS 533 Query: 550 ATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN--YCRP--I 605 + +L E + + + L + + +A +D ++ AI A+ Y RP + Sbjct: 534 CHSRYEEQQLSIVEEIIQVAVGYAAPLTSLNNELAQLDCLVSFAIAARSAPTPYVRPNML 593 Query: 606 IDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKST 665 + + ++ D RHP +E L++ S FIAN S K+ ++++TGPNMGGKST Sbjct: 594 AEGAGKLVLTDVRHPCLE--LQEHVS--FIAN----SVSFKKDKCNMFIITGPNMGGKST 645 Query: 666 FLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILN 725 ++R V+MA +G++VP A I +VD + RVG++DN+ G STFMVEMIET+ I+ Sbjct: 646 YIRSVGTAVLMAHVGAFVPCGMATISMVDSILGRVGASDNIIKGLSTFMVEMIETSGIIR 705 Query: 726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRF 785 AT++S VI+DE+GRGT+T +G IAW+ E+L + +C L ATHFHE+T L+++L Sbjct: 706 TATDKSLVIIDELGRGTSTYEGCGIAWSIAEHLAKETKCFTLFATHFHEITKLAETLPTV 765 Query: 786 HNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY-- 843 N + + L++V PG+ + S+GIQV +LA P V+ A ++ FE + Sbjct: 766 KNCHMAALADADNFTLLYQVRPGVMEKSFGIQVARLANFPEDVVQNAQEVYNEFEDEHAD 825 Query: 844 HHNQKDMRL 852 NQ+D L Sbjct: 826 KKNQEDKAL 834 >gi|149050462|gb|EDM02635.1| mutS homolog 2 (E. coli) [Rattus norvegicus] gi|171846747|gb|AAI61846.1| Msh2 protein [Rattus norvegicus] Length = 933 Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 176/584 (30%), Positives = 276/584 (47%), Gaps = 70/584 (11%) Query: 285 DIQSTLFIDSAARSNLEILRTLSGSRE-----QSLLKTIDYSITGAGGRLFAERIASPLT 339 D + +D AA + L GS E QSL ++ T G RL ++ I PL Sbjct: 295 DFSQYMKLDMAA---VRALNLFQGSVEDTTGSQSLAALLNKCKTAQGQRLVSQWIKQPLM 351 Query: 340 DSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 D +I RL+ + F+++ L +Q+ +L+ PD+ R + + +D + G+ Sbjct: 352 DKNRIEERLNLVEAFVEDSELRQSLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGV 411 Query: 399 RSGINILNLFLKNDLPEELRGAVEKLKKLPQSL-----EKTLSSMLSD------------ 441 N LP ++ A+EK + Q+L L+ + SD Sbjct: 412 ------------NQLPNVIQ-ALEKYQGRHQALLLAVFVTPLTDLRSDFSKFQEMIETTL 458 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNN 498 D+ + ++ D +L E R + D ++ + S + A + K +K+ + Sbjct: 459 DMDQVENHEFLVKPSFDPNLSELREVMDGLEKKMQSTLISAARGLGLDPGKQIKLDSSAQ 518 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN------ATN 552 GY+ VT VL+ + F N +FT EL L T Sbjct: 519 FGYYFRVTCKEEKVLRNN----KNFSTVDIQKNGVKFTNSELSSLNEEYTKNKGEYEEAQ 574 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAIL--AKEQNYCRPII--DN 608 A++ E+ + +S+ +E ++L++ V+A +D ++ A + A Y RP+I Sbjct: 575 DAIVKEIVN---ISSGYVEPMQTLND---VLAHLDAVVSFAHVSNAAPVPYVRPVILEKG 628 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 I+K RH VE Q FI ND +K+ ++TGPNMGGKST++R Sbjct: 629 KGRIILKASRHACVEV----QDDVAFIPNDVHF----EKDKQMFHIITGPNMGGKSTYIR 680 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q +IV+MAQ+G +VP A + IVD + +RVG+ D+ G STFM EM+ETASIL AT Sbjct: 681 QTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSAT 740 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA 788 S +I+DE+GRGT+T DG +AWA EY+ + ATHFHELT L+ + +N Sbjct: 741 KDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALASQIPTVNNL 800 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 + + E + L++V G+ D S+GI V +LA P VI A Sbjct: 801 HVTALTTEETLTMLYQVKTGVCDQSFGIHVAELANFPRHVIECA 844 >gi|255934164|ref|XP_002558363.1| Pc12g15640 [Penicillium chrysogenum Wisconsin 54-1255] gi|211582982|emb|CAP81191.1| Pc12g15640 [Penicillium chrysogenum Wisconsin 54-1255] Length = 943 Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 182/633 (28%), Positives = 307/633 (48%), Gaps = 78/633 (12%) Query: 250 GSFSQVE-KTAAAAAISYIKKTQMVNKPT-IGYPE--REDIQSTLFIDSAARSNLEIL-R 304 G+ Q E K A AA + IK ++ PT G + + D+ + +D++A L ++ Sbjct: 250 GTLPQTELKLAMGAASALIKYLNVLTDPTNFGQYQLYQHDLSQYMKLDASALRALNLMPG 309 Query: 305 TLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPI 364 G++ SL +++ T G RL A+ + PL D I R + F+ N L + Sbjct: 310 PRDGAKSMSLFGLLNHCKTPVGSRLLAQWLKQPLMDLAAIEQRQQLVEAFVVNTELRQTM 369 Query: 365 QK-ILKSSPDVPRSLSRLKIGRGEPKDI------AVIRDGIRSGI-NILNLFLKNDLPEE 416 Q+ L++ PD+ R R + + +D+ ++ G S + ++++ + L E Sbjct: 370 QEEHLRAIPDLYRLAKRFQRKQANLEDVVRAYQVSIRLPGFVSALSDVMDEQYQTPLEAE 429 Query: 417 ----LRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSK 472 LRG + L L + +E T+ DL + ++ D SL R +R + Sbjct: 430 YTSKLRGYSDSLAMLEEMVETTV------DLAALENHEFIIKPEFDDSL---RVIRKKLD 480 Query: 473 RIIASLQLKYAEETKI------KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHR 526 ++ + +++ +K K L ++++ G+ +T + A ++ +K + Sbjct: 481 KLRYDMDMEHQRVSKDLHQDMEKKLFMENHRVHGWCFRLTRNEAGCIR----NKREYQEC 536 Query: 527 QTMSNLTRFTTLELIDLENRIT------NATNSALLIELESFEILSNAIIEQSESLDNAS 580 T N FTT + L N T + L+ E+ + ++EQ + Sbjct: 537 STQKNGVYFTTANMQSLRREHDQLSSNYNRTQTGLVNEVVNVAASYCPVLEQ------LA 590 Query: 581 QVIAIIDI--SIALAILAKEQNYCRPIID--NSTNFIVKDGRHPIVEKTLKQQSSKPFIA 636 V+A +D+ S A A + Y RP + + N ++K+ RHP +E Q FI Sbjct: 591 GVLAHLDVIVSFAHASMHAPSGYVRPKMHPRGTGNTVLKEARHPCME----MQDDISFIT 646 Query: 637 NDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKL 696 ND L ++ ++TGPNMGGKST++RQ +I +MAQ G +VP + A + I D + Sbjct: 647 NDVSLI----RDESSFLIITGPNMGGKSTYIRQIGVIALMAQTGCFVPCTEAELTIFDCI 702 Query: 697 FSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIE 756 +RVG++D+ G STFM EM+ET++IL AT++S +I+DE+GRGT+T DG +AWA E Sbjct: 703 LARVGASDSQLKGVSTFMAEMLETSNILKSATSESLIIIDELGRGTSTYDGFGLAWAISE 762 Query: 757 YLHETNRCRGLLATHFHELTDLS----KSLKRFHNATLQVSDSN-------------EGI 799 ++ RC GL ATHFHELT L+ K++K H + + N + Sbjct: 763 HIVTEIRCFGLFATHFHELTALADRYPKAVKNLHVVAF-IGNGNEGESESETEEKKKRQV 821 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 L++V PGI D S+GI V +L P+ V++ A Sbjct: 822 TLLYRVEPGICDQSFGIHVAELVRFPDKVVNMA 854 >gi|183234999|ref|XP_001914132.1| DNA mismatch repair protein Msh2 [Entamoeba histolytica HM-1:IMSS] gi|169800793|gb|EDS89090.1| DNA mismatch repair protein Msh2, putative [Entamoeba histolytica HM-1:IMSS] Length = 630 Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 171/552 (30%), Positives = 264/552 (47%), Gaps = 45/552 (8%) Query: 300 LEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP- 358 +E L +E +L K ++ + T G ++ E I PL D KIN RL+ + F N Sbjct: 17 IEGLHLFGDKKEMTLFKHLNRTHTKIGEKMIKEWIKQPLIDKDKINKRLELVEGFYDNSG 76 Query: 359 ILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELR 418 I + + L PD+ + + I + + + I + + +R NI K +L E Sbjct: 77 IRLKIKNEELAIIPDLEKLIK--GINKSDLESIVKLYEAVRISKNI-----KEELKEMNN 129 Query: 419 GAVEK-----LKKLPQSLEK------TLSSMLSDDLPTFKRDGGFLRDGADASLDETRSL 467 ++EK L+K+ + +EK TL + FK +R+ D L + R Sbjct: 130 KSIEKEIIEPLEKITEEMEKFEEMVVTLIDIEETQNHVFK-----IREDFDEGLQKIRES 184 Query: 468 RDQSKRIIASLQLKYAEETKIKNLKIK---HNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 + + + + A + IK KIK HNNNL + V+ S+ +K ++ Sbjct: 185 HKKVEELFEKCLEQAANDLNIKTDKIKIVEHNNNL--ILRVSKSNEKEVK----KNKKYT 238 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 QT+ +FT E+ L + I + E ++ + E +I Sbjct: 239 IIQTLKGECKFTFKEMQTLNVKRDKLKLKEEEINKKFIEEINKVVEGYKEKFQELENMIG 298 Query: 585 IIDI--SIALAILAKEQNYCRPIIDNSTNFIVK--DGRHPIVEKTLKQQSSKPFIANDCD 640 ID S A + Q Y +P I S I+K RHP++E S FI ND D Sbjct: 299 YIDCIQSFATVSIDNNQGYSKPTIYESEKGIIKIIKARHPLIE----NNSINSFIENDID 354 Query: 641 LSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRV 700 + D+ + ++TGPNMGGKST+LR L VIMAQ+G ++P S AHI I DK+ R+ Sbjct: 355 I----DRKETRFQIITGPNMGGKSTYLRMIGLCVIMAQIGMFIPCSEAHISICDKIMCRI 410 Query: 701 GSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHE 760 G+ DN+ G STFM EM +T+ I+ ++T S V++DE+GRGT+T DG IAWA EYL Sbjct: 411 GAGDNIVEGMSTFMSEMKDTSEIIKKSTKNSLVLIDELGRGTSTYDGFGIAWAISEYLAI 470 Query: 761 TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGK 820 C + ATHFHE+T L K + N ++ ++ ++ +K+ G D S I V + Sbjct: 471 DIGCYCVFATHFHEITGLEKRVTGVINKHVEADIIDKQLVLKYKINNGSTDQSLAIYVAE 530 Query: 821 LAGLPNTVISRA 832 A P+ V+ A Sbjct: 531 WADFPHEVVESA 542 >gi|85093179|ref|XP_959643.1| hypothetical protein NCU02230 [Neurospora crassa OR74A] gi|3914053|sp|O13396|MSH2_NEUCR RecName: Full=DNA mismatch repair protein msh-2 gi|2606088|gb|AAB84225.1| DNA mismatch repair protein [Neurospora crassa] gi|28921089|gb|EAA30407.1| hypothetical protein NCU02230 [Neurospora crassa OR74A] Length = 937 Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 229/886 (25%), Positives = 405/886 (45%), Gaps = 129/886 (14%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLT-----KRGKHLGKDIP 82 +R Y + + +++ + GD+Y DDA +R + T + R H G +P Sbjct: 15 FIRFYKSLPQLGEEAIRIFDRGDWYTAHGDDATFIARTVYKTTSVIRQLGRSDHTG--LP 72 Query: 83 MCGVPVHTANHYIQK-LIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL-- 139 + V ++++ L K+G RI I + K VV+ +PG L Sbjct: 73 SVTMTVTVFRQFLREALFKLGKRIEIWASPSGRMNWK-----------VVKQASPGNLQD 121 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWA------IAWIDISTGIFKISTSNHDRLISD----I 189 ED+L + ++ +I + + + + D S +S + L S+ + Sbjct: 122 VEDELGGQFEGAPVILAVKISAKASEARTVGVCFADASVRELGVSEFLDNDLYSNFEALL 181 Query: 190 MRIDPREIIFS------EKELSHAEYKSLFETLGNVAVAQPNV--FFDHSISE--SRIAD 239 +++ +E I + EK+ A+ + + + G VA+A+ + F I + SR+ Sbjct: 182 IQLGVKECIVTQDKGEKEKDPELAKLRQIIDNCG-VAIAERSAGEFGTKDIEQDLSRLLK 240 Query: 240 YYNITTVDTFGSFSQVE-KTAAAAAISYIKKTQMVNKPT-IGYPE--REDIQSTLFIDSA 295 ++ Q + K A +A + IK +++ P+ G + + D+ + +D+A Sbjct: 241 DERAASL-----LPQTDLKLAMGSASALIKYLGILHDPSNFGQYQLYQHDLAQFMKLDAA 295 Query: 296 ARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFF 354 A L ++ G++ SL +++ T G RL ++ + PL ++ +I R + F Sbjct: 296 ALKALNLMPGARDGAKNMSLYGLLNHCKTPVGSRLLSQWLKQPLMNAEEIEKRQQLVEAF 355 Query: 355 IQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIA-----VIR--DGIRSGINILN 406 + L +Q+ L+S PD+ R R + G+ +D+ VIR I + +++ Sbjct: 356 ANDTELRQSMQEEHLRSIPDLYRLSKRFQRGKATLEDVVRAYQVVIRLPGFIGTLEGVMD 415 Query: 407 LFLKNDLPE----ELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLD 462 ++ L E +LR + L KL + +E T+ DL ++ D SL Sbjct: 416 EAYRDPLDEVYTNKLRELSDSLVKLQEMVETTV------DLDALDNHEFIIKPEFDDSL- 468 Query: 463 ETRSLRDQSKRIIASLQLKYAE------ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKD 516 R +R + R+ + ++AE + + K + ++++ G+ + +T + A ++ + Sbjct: 469 --RIIRKKLDRLRTDMDNEFAEAAEDLGQEREKKIFLENHKVHGWCMRLTRTEAGCIRNN 526 Query: 517 LESKDRFIHRQTMSNLTRFTTLELIDLENRIT------NATNSALLIELESFEILSNAII 570 R++ T N FTT L L N T S+L+ E+ ++ Sbjct: 527 ----SRYLECSTQKNGVYFTTKTLQALRREFDQLSQNYNRTQSSLVNEVVGVAASYCPVL 582 Query: 571 EQSESLDNASQVIAIIDISIALAILAKEQ--NYCRPIID--NSTNFIVKDGRHPIVEKTL 626 E+ + V+A +D+ ++ A + +Y RP I + ++ + RHP +E Sbjct: 583 ER------LAAVLAHLDVIVSFAHCSVHAPISYVRPKIHPRGTGRTVLTEARHPCMEV-- 634 Query: 627 KQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPAS 686 Q FI ND L+ + ++TGPNMGGKST++RQ +I +MAQ+G +VP S Sbjct: 635 --QDDVTFITNDVTLT----REDSSFLIITGPNMGGKSTYIRQIGVIALMAQIGCFVPCS 688 Query: 687 YAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLD 746 A + I D + +RVG++D+ G STFM EM+ETA+IL AT +S +I+DE+GRGT+T D Sbjct: 689 SAELTIFDSILARVGASDSQLKGVSTFMAEMLETANILKSATAESLIIIDELGRGTSTYD 748 Query: 747 GLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEG-------- 798 G +AWA E++ + C L ATHFHELT L+ N L V+ G Sbjct: 749 GFGLAWAISEHIVKEIGCFALFATHFHELTALADQYPNVKN--LHVTAHISGTDTDTDVI 806 Query: 799 ------------IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 + L+KV PGI D S+GI V +L P+ V+ A Sbjct: 807 TDEDEKAKKKREVTLLYKVEPGICDQSFGIHVAELVRFPDKVVRMA 852 >gi|119620618|gb|EAX00213.1| mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli), isoform CRA_a [Homo sapiens] Length = 924 Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 179/622 (28%), Positives = 290/622 (46%), Gaps = 74/622 (11%) Query: 285 DIQSTLFIDSAARSNLEILRTLSGSRE-----QSLLKTIDYSITGAGGRLFAERIASPLT 339 D + +D AA + L GS E QSL ++ T G RL + I PL Sbjct: 295 DFSQYMKLDIAA---VRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLM 351 Query: 340 DSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 D +I RL+ + F+++ L +Q+ +L+ PD+ R + + +D + GI Sbjct: 352 DKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGI 411 Query: 399 RSGINILNLFLKNDLPEE----------LRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKR 448 N++ K++ + L K + +E TL D+ + Sbjct: 412 NQLPNVIQALEKHEGKHQKLLLAVFVTPLTDLRSDFSKFQEMIETTL------DMDQVEN 465 Query: 449 DGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEV 505 ++ D +L E R + + ++ + S + A + + K +K+ + GY+ V Sbjct: 466 HEFLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRV 525 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT-NAT-----NSALLIEL 559 T VL+ + F N +FT +L L T N T A++ E+ Sbjct: 526 TCKEEKVLRNN----KNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEI 581 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN--YCRPII--DNSTNFIVK 615 + +S+ +E ++L++ V+A +D ++ A ++ Y RP I I+K Sbjct: 582 VN---ISSGYVEPMQTLND---VLAQLDAVVSFAHVSNGAPVPYVRPAILEKGQGRIILK 635 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 RH VE Q FI ND +K+ ++TGPNMGGKST++RQ +IV+ Sbjct: 636 ASRHACVEV----QDEIAFIPNDVYF----EKDKQMFHIITGPNMGGKSTYIRQTGVIVL 687 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+G +VP A + IVD + +RVG+ D+ G STFM EM+ETASIL AT S +I+ Sbjct: 688 MAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIII 747 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGT+T DG +AWA EY+ + ATHFHELT L+ + +N + + Sbjct: 748 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTT 807 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVI------------------SRAYDILK 837 E + L++V G+ D S+GI V +LA P VI S+ YDI++ Sbjct: 808 EETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELEEFQYIGESQGYDIME 867 Query: 838 TFEKLYHHNQKDMRLYYPEIQT 859 K + ++++R+ P+ Q Sbjct: 868 PAAKKCYLERENLRVTEPKDQC 889 >gi|303391044|ref|XP_003073752.1| MutS-like DNA mismatch repair protein [Encephalitozoon intestinalis ATCC 50506] gi|303302900|gb|ADM12392.1| MutS-like DNA mismatch repair protein [Encephalitozoon intestinalis ATCC 50506] Length = 925 Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 219/871 (25%), Positives = 393/871 (45%), Gaps = 144/871 (16%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP +Q+ +IK + D++VF++ G FYEL+ +DAL+ ++ + +T R ++ M G Sbjct: 131 TPFEKQFWDIKKDHFDTIVFFKKGKFYELYENDALIGAKLFDLRITDR-----VNMKMSG 185 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSL-------------VRRNVVR 132 P + +++ +K ++ G++IA +Q E+ + + R L +RR + Sbjct: 186 FPESSLDYWTRKFLENGYKIARVDQSENMIGKQIRERDELSKGVEGRMAKDKIIRRELKE 245 Query: 133 LVTPGTLTEDQLLSPTDSNYLMAVARIRTEWA----------IAWIDISTGIFKISTSNH 182 ++T GT+ + + YLM+VA +A + D S G S+ Sbjct: 246 IITQGTIYNIDYMKSSIPMYLMSVATDEICYAEKCNGEIHTSVLLYDASIGEVYFSSFCD 305 Query: 183 DRLISDIMRI----DPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIA 238 DR I I D RE+I A++ T+ + P+ S+ Sbjct: 306 DRARHGIKTILSQHDVREMI--------ADF-----TIPGIPRVVPD---KTGYVSSKKY 349 Query: 239 DYYNITTVDTFGSFSQ-VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAAR 297 ++ N F ++ +EK + A+ +K +++ +D T+ +D A Sbjct: 350 EFSNSREYVCFQYLAKYMEKLRRSDALKNVKISKL-----------QDEARTMVVDDATL 398 Query: 298 SNLEILRT-LSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQ 356 N+EI + +G+ E++L K ID+S T G RL IA+PL I R ++ F + Sbjct: 399 RNMEIFKNNYNGTGEKTLFKAIDFSSTPFGQRLLRRWIAAPLVRREDIAKRQETARMFKE 458 Query: 357 NPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDI-AVIR--DGIRSGINILNLFLKNDL 413 + ++ ++ L D R L+RL G KD+ IR D R ++L LK Sbjct: 459 --VEVSNLKNALARIGDGERLLTRLFNGNPGTKDLNKFIRCLDACREAGDVLVQTLKGQK 516 Query: 414 PEELRGAVEKLKKLPQSLEKTLS------SMLSDDLPTFKRDGGFL------RDGADASL 461 + V K ++ + + K L + ++ + DG L R + L Sbjct: 517 SDSAESMVAKAEEFSREISKVLEWHRKIYDVSETEISPGEEDGDELCQLMKERREIEEGL 576 Query: 462 DETRSLRDQSKRIIAS-----------LQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSA 510 +E LR+Q R+ Q++ A+ETK+ + YFI ++S+ Sbjct: 577 NEY--LREQKARLKCQSIKFKDVGKDIFQMEVAKETKVPS---------DYFI-MSSTKG 624 Query: 511 SVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAII 570 + +R+ R + + R+ ++ E +I + S L ++ +L + + Sbjct: 625 T---------NRYYTRDLKNLVERY-----VECEEKIFQSKGSLLRRAIDV--LLPHVVF 668 Query: 571 EQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQS 630 + + +A +D ++ ++ P S + +PI Sbjct: 669 FRQMFWE-----LANVDCYLSFTTFSQRNRATTPTF--SEGLRICGMSNPIY-------- 713 Query: 631 SKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHI 690 F+AND + ++ +LTG NMGGKST LR VI++Q G V Sbjct: 714 -PTFVANDYNAQ-------KRILVLTGANMGGKSTLLRTLCFNVILSQAGMDVCCEKMET 765 Query: 691 GIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSI 750 + D++F+R+G+ D+L G STFMVE+ ETASIL +T S V++DE+GRGT+T DG I Sbjct: 766 PLFDRIFTRIGARDDLVKGESTFMVELGETASILKHSTRNSLVMMDELGRGTSTRDGECI 825 Query: 751 AWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIA 810 A A ++YL E C L +TH+H + + ++ N + + + I+FL+K++ G + Sbjct: 826 ARAVLDYLKERG-CHVLFSTHYHRII---REVEGVSNGYMNSTVKGKDIVFLYKLMDGTS 881 Query: 811 DHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 S+G+ V ++AG+P ++ RA I +T ++ Sbjct: 882 WDSHGLYVARMAGVPEEIVERAERIKETLQR 912 >gi|158299376|ref|XP_319476.4| AGAP010282-PA [Anopheles gambiae str. PEST] gi|157014335|gb|EAA14192.4| AGAP010282-PA [Anopheles gambiae str. PEST] Length = 881 Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 177/608 (29%), Positives = 287/608 (47%), Gaps = 61/608 (10%) Query: 258 TAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGS------RE 311 +A ++Y++ TQ E D + +D+AA S L + S R Sbjct: 267 SALGVILNYLELTQEPGNHGQFRLESLDANRFVHLDAAAVSALNLFPNPGTSVKSNAYRW 326 Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPI-QKILKS 370 QS+L +D T G RL A+ + PL D I R D + +F+ N I+ + + LK Sbjct: 327 QSVLGVLDRCRTPQGHRLMAQWMKQPLQDYEIIKDRHDIVEYFVNNTIVRSELYDNHLKK 386 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE---------ELRGAV 421 PD+ L RL + +DI + I +L L NDL ++ ++ Sbjct: 387 LPDIMFVLKRLLRRKASLQDIFRLYQVILRVPRMLTLLETNDLESIAVLNNIYNPIKDSL 446 Query: 422 EKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLK 481 LK +E+ + DL + ++ D+ L + + D+ + Sbjct: 447 NDLKLFKSMVEQII------DLQAVEHGEYLVKADFDSQLKKRKEEMDEVYSKMKHHLST 500 Query: 482 YAEETKI---KNLKIKHNNNLGYFIEVTSSSASVLKKD--------LESKDRFIHRQTMS 530 A++ + ++K++ + GY +T ++++K+ ++ RFI + Sbjct: 501 VAKDIGLDAGSSIKLEFVSQHGYHFRITLKDETLIRKNNSYRILDAVKGGVRFITTKLQD 560 Query: 531 NLTRFTTLELIDLENRITNATNSALLIELESFEILSNAI--IEQSESLDNASQVIAIIDI 588 F TL++ E + T E++ A+ +E L++ IA +D Sbjct: 561 YSESFATLKIAYEEQQQTIVA-----------EVIRVAVGYVEPWTMLNSQ---IAYLDC 606 Query: 589 SIALAILAKEQN--YCRPIIDNSTNFIVK--DGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 ++ A+ A Y RP + ++K RHP +E Q +IAND Sbjct: 607 LVSFAVSASTAPIPYVRPKMYREGPSVLKLIQVRHPCLE----LQEDVNYIANDAMF--- 659 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 D +++TGPNMGGKST++R + V+MA +GS+VP A + I D + RVG+ D Sbjct: 660 -DAKETSTYIITGPNMGGKSTYIRSVGVTVLMAHIGSFVPCESAEMSIFDCILGRVGADD 718 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 N G STFMVEMIETA I+ +AT++S VI+DE+GRGT+T +G IAW+ E+L + ++C Sbjct: 719 NFTKGLSTFMVEMIETAGIIRRATDRSLVIIDELGRGTSTYEGCGIAWSIAEWLAKESKC 778 Query: 765 RGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGL 824 L ATHF E+TDL+ ++ N +Q E + L++V PG+ + S+GIQV KLA Sbjct: 779 FTLFATHFQEITDLASYVENVKNCHMQAIVDGECLTLLYQVKPGVMEKSFGIQVAKLANF 838 Query: 825 PNTVISRA 832 P VI A Sbjct: 839 PPGVIKLA 846 >gi|302681541|ref|XP_003030452.1| hypothetical protein SCHCODRAFT_257642 [Schizophyllum commune H4-8] gi|300104143|gb|EFI95549.1| hypothetical protein SCHCODRAFT_257642 [Schizophyllum commune H4-8] Length = 965 Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 239/885 (27%), Positives = 395/885 (44%), Gaps = 126/885 (14%) Query: 44 VFYRMG--DFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP-VHTANHYIQKLIK 100 +F+R G +FY + DAL + + T K+LG G+P VH Q L++ Sbjct: 39 LFHRQGPDEFYSCYGPDALFVANYVFHT-NSVIKYLGHGGRATGLPTVHLKTTVAQSLLR 97 Query: 101 IGHRIAICEQIESPLEAKKRG-NKSLVRRNVVRLVTPGTL--TEDQLLSPTD---SNYLM 154 + +Q++ + + G K + ++ + +PG L ED L + +D + +M Sbjct: 98 DALTV---KQLKVEIYVPESGQGKRATKFHLDKEASPGNLQQVEDILFTNSDMTTAPIVM 154 Query: 155 AVARIRTEWA----------IAWIDISTGIFKISTSNHDRLISD----IMRIDPREIIF- 199 A+ T A +A+ D S ++ + L S+ I+++ +E + Sbjct: 155 AITLASTPAAGGKTKLKTVGVAYADTSLRELGVADFVDNELYSNTESLIIQLGVKEAVIP 214 Query: 200 -------SEKELSHAEYKSLFETLGNVAVA-QPNVFFDHSISES---RIADYYNITTVDT 248 SE++L + +S+ + G V +P+ F D ++++ + +T D Sbjct: 215 MGTSSGTSERDLDLNKLRSVLDRCGVVITERKPSEFRDKNVADDVPRLLVATPGTSTADP 274 Query: 249 FGSFSQVEKTAAAAAI-------SYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLE 301 + ++ A A+ S + N TI D++ + +D++A L Sbjct: 275 TATIPELSLPNAKGALNALLGYLSLLADPANHNAWTI---RTHDLEQYMKLDASALRALN 331 Query: 302 ILRTLSGSREQS-----LLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQ 356 ++ ++G QS LL ++ T G R+ + PL + +I R + + F Sbjct: 332 LV-DMTGQSGQSNKNTTLLGLLNKCKTAQGTRMLGTWLKQPLVNLHEIQKRQELVQIFFD 390 Query: 357 NPILINPIQ-KILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL-------- 407 + +Q + LK PD+ R +GR K +A + + +R IL L Sbjct: 391 DANARQTLQDEYLKMMPDMHR------LGRRFQKGLATLENVVRVYQVILKLPGMIEALE 444 Query: 408 FLKNDLPE-----------ELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDG 456 ++ + PE ELR L K Q +E+TL DL ++ Sbjct: 445 AVRTETPEHQALIEETYLRELRDKEASLSKYSQMVEQTL------DLDQLDNHNYVVKPD 498 Query: 457 ADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVL 513 D L E + ++ + + E+ I K L +++N GY +T + A Sbjct: 499 YDEQLQELHNKLQEATEKLDQEHRRVGEDLNIELDKKLHLENNPTYGYCFRLTKNDA--- 555 Query: 514 KKDLESKDRFIHRQTMSNLTRFTTLELIDL---ENRITNA---TNSALLIELESFEILSN 567 K KD++I T + F T +L +T A S L+ E+ + Sbjct: 556 KGITNKKDKYIELATNKSGVYFVTKKLKTAAADHKELTQAYSRKQSGLVKEIVAIAATYT 615 Query: 568 AIIEQSESLDNASQVIAIIDISIALAILAKEQ--NYCRPIIDNSTN--FIVKDGRHPIVE 623 +++E SLD+ VIA +D+ I+ A ++ Y +P + N I+K+ RHP +E Sbjct: 616 SVME---SLDS---VIAHLDVIISFAHVSVNAPVTYVKPKVVERGNGSLILKEARHPCLE 669 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 Q FI ND ++ K+ + ++TGPNMGGKST++RQ +I +MAQ G +V Sbjct: 670 V----QDEVNFIPNDVEMI----KDKSEFQIITGPNMGGKSTYIRQVGVIALMAQTGCFV 721 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 P A + I D + RVG+ D+ G STFM EM+ETA+IL AT S +I+DE+GRGT+ Sbjct: 722 PCDKATLPIFDSVLCRVGAGDSQLKGVSTFMAEMLETATILRSATKDSLIIIDELGRGTS 781 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN--ATLQVSDSNEG--- 798 T DG +AWA E++ L ATHFHELT L + L N VS + G Sbjct: 782 TYDGFGLAWAISEHIASQIHAFCLFATHFHELTALDQQLPHVTNLHVVAHVSGDSSGDTS 841 Query: 799 -IIFLHKVIPGIADHSYGIQVGKLAGLPNTVI---SRAYDILKTF 839 I L+KV PG++D S+GI V +LA P V+ R D L+ F Sbjct: 842 DITLLYKVEPGVSDQSFGIHVARLANFPENVVKLAKRKADELEDF 886 >gi|313227995|emb|CBY23144.1| unnamed protein product [Oikopleura dioica] Length = 1136 Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 235/893 (26%), Positives = 389/893 (43%), Gaps = 111/893 (12%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 +KS TP M + +IKS N D ++FY++G FYEL+ DA++ G+T K GK Sbjct: 252 IKSLTPGMGNWWKIKSRNFDVVIFYKVGKFYELYHMDAVIGVENCGVTFMK-----GK-F 305 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKS---------------LV 126 G P +H+ L+ G ++A EQ E+ K+R +S Sbjct: 306 AHAGFPEMRFDHFASMLVTKGFKVARVEQTETQESNKERVKESKDWKGVTKKLDKFEKQT 365 Query: 127 RRNVVRLVTPGTLTEDQLLSPTDSNY----LMAVARIRTEWAIAWIDISTGIFKISTSNH 182 RR V +VTPGT S D + +V +A +D S + Sbjct: 366 RREVCAIVTPGTRVA-AFNSHDDFGHKEGLFASVFECEKTIGVALVDTSMSELIVGQFGD 424 Query: 183 DRLISDIMRI-DPREIIFSEKELSHAEYKSLFETL-----GNVAVAQPN-VFFDHSISES 235 D S++ + R I K+ +L + L G + P+ F D + ++ Sbjct: 425 DTFFSNLRTLLSQRHISQLMKQKKACISPNLHQVLAATSKGICSDDLPDKAFLDVAKTKK 484 Query: 236 RIADYYN----ITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNK-----PTIGYPERE-- 284 I + N + + + V A A ++++K+ +++++ I Y + Sbjct: 485 IIREIDNDEIKLDKLVEICDANPVGTQALGALLTHLKRYEIIHEVLRTSTFIQYETSDRL 544 Query: 285 ----DIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTD 340 + Q + +D+A NL + + G+ S L+ +D + G R E + SP + Sbjct: 545 LRKINTQQRMIMDAATLINLGVTQGDDGTERGSCLRKLDTCCSAGGKRKLWETVISPPAN 604 Query: 341 STKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSR---LKIG---RGEPKDIAVI 394 I R I + N +K++ PD+ R +SR L IG P AV+ Sbjct: 605 PDVIRHRQKCIKALMDNQEFCKDARKLISGFPDLARLISRFGNLSIGIRPSDHPDKRAVM 664 Query: 395 -------RDGIRSGINILNLFLKNDLPEELRGAV-EKLKKLPQSLEK---TLSSMLSDDL 443 R RS +L+ F D + + A E L K+ Q ++ + +L++ Sbjct: 665 YEEILYNRQKTRSFCRVLSSFKDFDAWIKKQSATNENLLKILQLVDNENIVIEDLLANWR 724 Query: 444 PTF-----KRDGGFL-RDGADASLD----ETRSLRDQSKRIIASLQLKYAEETKIKNLKI 493 TF KR+ ++GA+ D E + ++++++ + Y +K+ K Sbjct: 725 KTFDMEKAKREEKLTPKEGANPPFDRAVKEIKRIQNEAEVFRTEVADNYGHAKLLKSGK- 783 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 L + I+V + +++ + + ++ EL L ++ N Sbjct: 784 -----LHFVIQVRDT--------VKTPNEWTSIGLTKGFKKYQAPELDVLNKEMSRYINL 830 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKE-QNYCRP-IIDNSTN 611 + E+ ++ + S ++I +D I+ A + C P ++D Sbjct: 831 KDMALSEASSVIFGEFYKTSNRWLAIVRMIDELDALISFANYGHTIEERCFPEVVDEGEV 890 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 G+HP V+ + FI ND DL + GK LLTGPNMGGKST LRQ Sbjct: 891 LSFTVGKHPTVD-------AANFIPNDVDL-----EEGGKCILLTGPNMGGKSTILRQIG 938 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 L+ ++A G VPA VD++F+R+G +D L +G STFMVEM ET+SIL +T +S Sbjct: 939 LLTLLAHYGCAVPAESMQFSPVDRIFTRLGCSDRLLAGESTFMVEMAETSSILKSSTKRS 998 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 ++LDE+GRGT+T DG SIA A +E L N R + +TH+H L L + +R L Sbjct: 999 LLLLDELGRGTSTHDGSSIAQAVLETLSARN-VRTIFSTHYHTLF-LHLNRQRDEETGL- 1055 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYH 844 E + FL+ + G A S+G + AGLP+ VI A K +KL++ Sbjct: 1056 -----EKVTFLYTLCDGHASRSHGFHAARSAGLPDEVILAAQRAAKDLQKLHN 1103 >gi|296417699|ref|XP_002838490.1| hypothetical protein [Tuber melanosporum Mel28] gi|295634429|emb|CAZ82681.1| unnamed protein product [Tuber melanosporum] Length = 905 Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 220/801 (27%), Positives = 372/801 (46%), Gaps = 109/801 (13%) Query: 112 ESPLEAKKR----GNKSLVRRNVVRLVTPGTL--TEDQLLSPTDSNYLMAVARIRTEW-- 163 E + +KR G K + + + +PG L ED DS+ ++ RI + Sbjct: 84 ECLFQNRKRVEIWGAKLRNKWGITKKASPGNLQDVEDDFAGQIDSSPIILAVRISVKGEE 143 Query: 164 ---AIAWIDISTGIFKISTSNHDRLISD----IMRIDPREIIFSE----KELSHAEYKSL 212 + + D S +S + L S+ I+++ +E + K+ + + + Sbjct: 144 RNVGVCFADASVRELGVSEFADNDLYSNFESLIIQLGVKECVVQSDEQNKDYELGKLRGI 203 Query: 213 FETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE-KTAAAAAISYIKKTQ 271 E G V + F E ++ +T+ G QVE K A AAA + I+ Q Sbjct: 204 IERCGIVMTFRKASEFSVKDIEQDLSRL--LTSEIAAGVLPQVENKLAMAAASALIRYLQ 261 Query: 272 MVNKPTIGYPE----REDIQSTLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAG 326 +++ + + + + D+ + +D++A L ++ GS+ SL ++ T G Sbjct: 262 LMSD-DLNFGQYRLYQHDLAQYMKLDASAVKALNLMPGPRDGSKNMSLYGLLNKCKTAIG 320 Query: 327 GRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGR 385 RL + + PL +I R + F+++ L +Q+ LKS PD+ R R + Sbjct: 321 TRLLGQWLKQPLMSLEEIKKRQFLVEAFVEDTELRQTMQEEHLKSIPDLYRLSKRFQ--- 377 Query: 386 GEPKDIAVIRDGIRS--------GI-----NILNLFLKNDL----PEELRGAVEKLKKLP 428 K++A + D +R+ G +++ K+ L +LR L+KL Sbjct: 378 ---KNLANLEDVVRAYQVAIRIPGFISTFEGVMDETYKDPLDLRYTTKLREIYGNLEKLQ 434 Query: 429 QSLEKTLSSMLSDD-----LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 + +E T+ D+ P F D +RD D R++ + R+ + L Sbjct: 435 ELVETTVDLDALDNHEFIIKPEFSDDLKLVRDKLDKL---KRAMDTEHHRVGSDL----G 487 Query: 484 EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDL 543 +E K L ++++ G+ +T + A ++ E ++ TM N FTT + DL Sbjct: 488 QEVD-KKLFMENHKTYGWCFRLTRAEAGSIRNQKEYREI----STMKNGVFFTTTVMQDL 542 Query: 544 E------NRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILA- 596 + I N T S L+ E+ + ++E+ + V+A +D+ ++ A ++ Sbjct: 543 KRDFDKSTYIYNKTQSGLVDEVVTVASSYCPVLEE------LAAVLAHLDVIVSFAHVSV 596 Query: 597 -KEQNYCRPIID--NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLW 653 Y +P + N I+K+ RHP +E Q FI ND L + S + Sbjct: 597 HAPSPYVKPKMHARGEGNTILKEARHPCME----MQDDIQFITNDVSLC----RGSSEFL 648 Query: 654 LLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTF 713 ++TGPNMGGKST++RQ +I +MAQ+G +VP S A + I D + +RVG++D+ G STF Sbjct: 649 IITGPNMGGKSTYIRQIGVIALMAQVGCFVPCSEAELTIFDCILARVGASDSQMKGVSTF 708 Query: 714 MVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFH 773 M EM+ET++IL AT++S +I+DE+GRGT+T DG +AWA E++ + RC + ATHFH Sbjct: 709 MAEMLETSTILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIVKEIRCFAMFATHFH 768 Query: 774 ELT---DLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVIS 830 ELT D S+K H + L+KV G++D S+GI V +L P VI+ Sbjct: 769 ELTALVDEYPSVKNLHVIA--------HVTLLYKVDEGVSDQSFGIHVAELVRFPQKVIN 820 Query: 831 ---RAYDILKTFEKLYHHNQK 848 R D L+ F H QK Sbjct: 821 MAKRKADELEDFTG--KHEQK 839 >gi|218196464|gb|EEC78891.1| hypothetical protein OsI_19262 [Oryza sativa Indica Group] gi|222630934|gb|EEE63066.1| hypothetical protein OsJ_17874 [Oryza sativa Japonica Group] Length = 942 Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 205/686 (29%), Positives = 316/686 (46%), Gaps = 98/686 (14%) Query: 282 EREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDYSIT-GAGGRLFAERIASPLT 339 E+ + + +DSAA L I + ++ SL ++ + T G G RL + PL Sbjct: 288 EKYSLDRYMRLDSAAVRALNIAEAKTDVNKNFSLFGLMNRTCTVGMGKRLLNRWLKQPLL 347 Query: 340 DSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPR--SLSRLKIGRGEP--------- 388 D +IN RLD + F+++P L ++ LK D+ R R + +P Sbjct: 348 DVNEINNRLDMVQAFVEDPELRQGLRYQLKRMSDIDRLTHALRKRTANLQPVVKLYQSCI 407 Query: 389 -----KDIAVIRDGIRSGI------NILNLFLKNDLPEELRGAVEKLKKLPQ--SLEKTL 435 K++ DG S + N L+ +L D VE L Q + E + Sbjct: 408 RVSYIKNVLQQYDGSFSALIRTKFLNSLDEWLTEDRFGRFASLVETAIDLDQLENGEYRI 467 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRS-LRDQSKRIIASLQLKYAEETKIKNLKIK 494 S S DL K + L E + + + K A L L T K LK++ Sbjct: 468 SPRYSSDLAVLKDE-----------LSEVENHINNLHKHTAADLDL-----TIDKQLKLE 511 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 LG+ ++ ++K L S +I +T + +FT+ +L L ++ A Sbjct: 512 -KGQLGHVFRISKKDEQKVRKKLTSN--YIIIETRKDGVKFTSSKLKKLGDQY-----QA 563 Query: 555 LLIELESFEILSNAIIEQ-----SESLDNASQVIAIIDISIALAILAKEQN--YCRPIID 607 LL E S + + + SE +N + +++ +D+ + A LA Y RP I Sbjct: 564 LLGEYTSCQKKVVDDVVRVSASFSEVFENFAAILSELDVLQSFADLATSSPIPYVRPEIT 623 Query: 608 NST--NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKST 665 S + I++ RHP +E Q FI NDC L + ++TGPNMGGKST Sbjct: 624 ASEEGDIILEGSRHPCLEA----QDGVNFIPNDCTLV----REKSWFQIITGPNMGGKST 675 Query: 666 FLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILN 725 F+RQ + V+MAQ+GS+VP A I + D +F+RVG+ D G STFM EM+ETASIL Sbjct: 676 FIRQVGVNVLMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK 735 Query: 726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK----- 780 A+++S +I+DE+GRGT+T DG +AWA E+L E R L ATHFHELT L Sbjct: 736 GASDKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVTRAPTLFATHFHELTALGHKSGDE 795 Query: 781 -------SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAY 833 + +H + S+ + L+KV PG D S+GI V + A P V++ A Sbjct: 796 HQHVPNLGIANYHVGA-HIDPSSRKLTMLYKVEPGACDQSFGIHVAEFANFPEAVVALAK 854 Query: 834 DILKTFEKL-----YHHNQKD------MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNL 882 + E + + KD R++ P+ T+ + +L +E++ L L Sbjct: 855 SKAEELEDFSTAPNFSDDSKDEVGSKRKRVFSPDDVTRGAARA-----RLLLEELASLPL 909 Query: 883 DEMSPLTALKTLYAVKAWTLEKYSTD 908 DEM A +T+ +K+ EK + D Sbjct: 910 DEMDGTKAAETVTKLKS-DFEKDAAD 934 >gi|254566783|ref|XP_002490502.1| Mismatch repair protein [Pichia pastoris GS115] gi|238030298|emb|CAY68221.1| Mismatch repair protein [Pichia pastoris GS115] gi|328350893|emb|CCA37293.1| DNA mismatch repair protein mutS [Pichia pastoris CBS 7435] Length = 1004 Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 235/941 (24%), Positives = 429/941 (45%), Gaps = 126/941 (13%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD----- 80 TP+ +Q+I +K+ + D ++ ++G Y+ F +DA +AS L I L + Sbjct: 99 TPLEQQFISLKANHKDKILAIQVGYKYKFFGEDAKVASGILDIMFIPGKVSLDPNNSEET 158 Query: 81 ----IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKS-LVRRNVVRLVT 135 C VP + ++++L+ G ++ + +Q+E+ NKS L R + + T Sbjct: 159 DYDRYAYCSVPDTRLHIHLKRLLNKGLKVGVVKQMETAAIKSNSANKSTLFERKLTNVYT 218 Query: 136 PGTLTEDQLLSPTDSN----YLMAVARIRTEWAIAWID-ISTGIFKIS---TSNHDRLIS 187 T +D +SN ++ ++ + ++ ++ I++ I S T L + Sbjct: 219 SATYIDDTNEQDLESNKAGSFIFSICEKKNRLSVMAVNLINSEIVYDSFEDTQIRTNLRT 278 Query: 188 DIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVD 247 + +DP E + + ELS + + + ++ + +S++ RI + +D Sbjct: 279 RLQYLDPAEYV-TIGELSKETEQCISSFIMEKSIGR------NSMTIRRIPYQLDAQYLD 331 Query: 248 TFGSFSQVEKTAAAAAI--SYIKKT----QMVNKPTI----------------GYPERED 285 F +A+ +I + QM + Y D Sbjct: 332 KLTEFVSASSNPVDSALLLEFITELPSHLQMCTYGLVEYLTEFGLSSVFLLKRNYHRFSD 391 Query: 286 IQSTLFIDSAARSNLEILRT-LSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKI 344 + +DS ++EIL +G SLL +D++ T G RL + I PL D +I Sbjct: 392 SNKYMILDSNTLKSIEILNNNTNGEEVGSLLWLLDHTRTKFGYRLLRKWITKPLIDREQI 451 Query: 345 NTRLDSINFFIQN--PILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGI 402 R +I + IL+ + L ++ D+ RSLSR+ G+ K++ ++ + Sbjct: 452 LNRSAAIRDLSLHFKSILVEKLCFFLSNTNDLERSLSRVYFGKTTRKEMYLVLKKFNEIL 511 Query: 403 NILNLFLKNDLPE-ELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASL 461 + + K ++ + +L ++ + + L TL + + +L +F G + A ++ Sbjct: 512 AFMQNYSKAEIDQLQLESSLLREEFL------TLHQLATSELKSFTAYLGMINSAA--AM 563 Query: 462 DETRSLRDQSKRIIASLQLKYAEETKIKNLKIK--------------------------- 494 DE+ D+ + + + KI K K Sbjct: 564 DES----DEKTHVTNYFSSDFFDYDKIAVEKRKVQELETLLEKELINIRQILKRPSMEYI 619 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 NN Y IEV +S+ L K+ +I ++RF T E L ++ + Sbjct: 620 SNNKEPYLIEVRNSTVKSLPKN------WIKINGTKTVSRFRTPETTKLYKQLQYLEDLV 673 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIAL-AILAKEQNYCRPIIDNSTNFI 613 ++ F ++I Q L +A +D I+L A N C+P + +S Sbjct: 674 VIANESCFSSFLHSIKSQRPYLSRVVSALATLDCLISLTASSFNGVNNCQPELVDSPMIQ 733 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 ++ R+P++E K +I ND +S + ++ ++TGPNMGGKS+F+RQ ALI Sbjct: 734 LEGSRNPVIESLTKT----GYIDNDFSMS----QKENRVSIITGPNMGGKSSFIRQIALI 785 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 VIMAQ+G VPA+ A +G+ D ++ R+G+ D++ G+STF VE+ E ++I+N T +S V Sbjct: 786 VIMAQIGCSVPATNAKLGVFDSIYIRMGAHDDIIGGQSTFQVELSECSTIINNCTPKSLV 845 Query: 734 ILDEIGRGTATLDGLSIAWATIEYL--HETNRCRGLLATHFHELTDLSKS----LKRFHN 787 +LDEIGRGT+T+DG SIA++ ++YL + L THF L + + +K FH Sbjct: 846 LLDEIGRGTSTVDGYSIAYSILDYLISEPSKSPFVLFITHFPTLHVIEQKYGTIVKNFHM 905 Query: 788 ATLQVSDSNEG------IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE- 840 + + EG ++FL+K++ G+ ++SYG+ V ++A +P VIS+A++I + + Sbjct: 906 GYM--VEKKEGDLQDPVLVFLYKLVEGVCENSYGLNVARMALIPEEVISKAFEISRELQA 963 Query: 841 KLYHHNQKDM-RLYYPEIQTKESKNNLSKNDKLFVEKIKCL 880 K+ ++D+ R I T L ++DK VEK+K L Sbjct: 964 KMEFSRRRDLIRKSLACISTL-----LQEDDKDSVEKLKEL 999 >gi|289620935|emb|CBI52669.1| putative MSH2 protein [Sordaria macrospora] Length = 934 Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 226/887 (25%), Positives = 405/887 (45%), Gaps = 117/887 (13%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLT-----KRGKHLGKDIP 82 +R Y + + +++ + GD+Y DDA +R + T + R H G +P Sbjct: 15 FIRFYKSLPQLGEEAIRIFDRGDWYTAHGDDATFIARTVYKTTSVIRQLGRSDHTG--LP 72 Query: 83 MCGVPVHTANHYIQK-LIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL-- 139 + V ++++ L K+G RI I + K +V+ +PG L Sbjct: 73 SVTMTVTVFRQFLREALFKLGKRIEIWASPSGRMNWK-----------IVKQASPGNLQD 121 Query: 140 TEDQLLSPTDSNYLMAVARIRTEWA------IAWIDISTGIFKISTSNHDRLISD----I 189 ED+L + ++ +I + + + + D S +S + L S+ + Sbjct: 122 VEDELGGQFEGAPVILAVKISAKASEARAVGVCFADASVRELGVSEFLDNDLYSNFEALL 181 Query: 190 MRIDPREIIFS------EKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNI 243 +++ +E I + EK+ A+ + + + G +P F E ++ Sbjct: 182 IQLGVKECIITQDKGEKEKDPELAKLRQIIDNCGVAVSERPAGEFGIKDIEQDLSRLLKD 241 Query: 244 TTVDTFGSFSQVE-KTAAAAAISYIKKTQMVNKPT-IGYPE--REDIQSTLFIDSAARSN 299 T Q + K A +A + IK +++ + G + + D+ + +D+AA Sbjct: 242 ERAATL--LPQTDLKLAMGSAAALIKYLGVLHDSSNFGQYQLYQHDLAQFMKLDAAALKA 299 Query: 300 LEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNP 358 L ++ G++ SL +++ T G RL ++ + PL ++ +I R + F + Sbjct: 300 LNLMPGARDGAKNMSLYGLLNHCKTPVGSRLLSQWLKQPLMNAEEIEKRQQLVEAFANDT 359 Query: 359 ILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIA-----VIR--DGIRSGINILNLFLK 410 L +Q+ L+S PD+ R R + G+ +D+ VIR I + +++ + Sbjct: 360 ELRQTMQEEHLRSIPDLYRLSKRFQRGKATLEDVVRAYQVVIRVPGFIGTLEGVMDEAYR 419 Query: 411 NDLPE----ELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRS 466 + L E +LR + L KL + +E T+ DL ++ D SL R Sbjct: 420 DPLDEVYTNKLRELSDSLVKLQEMVETTV------DLDALDNHEFIIKPEFDDSL---RI 470 Query: 467 LRDQSKRIIASLQLKYAE------ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESK 520 +R + R+ + ++A+ + + K + ++++ G+ + +T + A ++ + Sbjct: 471 IRKKLDRLRTDMDNEFADAADDLGQEREKKIFLENHKVHGWCMRLTRTEAGCIRNN---- 526 Query: 521 DRFIHRQTMSNLTRFTTLELIDLENRIT------NATNSALLIELESFEILSNAIIEQSE 574 R++ T N FTT L L N T S+L+ E+ ++E+ Sbjct: 527 SRYLECSTQKNGVYFTTKTLQTLRREFDQLSQNYNRTQSSLVNEVVGVASSYCPVLER-- 584 Query: 575 SLDNASQVIAIIDISIALAILA--KEQNYCRPIID--NSTNFIVKDGRHPIVEKTLKQQS 630 + V+A +D+ ++ A + +Y RP I + ++ + RHP +E Q Sbjct: 585 ----LAAVLAHLDVIVSFAHCSVHAPTSYVRPKIHPRGTGRTVLTEARHPCMEV----QD 636 Query: 631 SKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHI 690 FI ND LS + ++TGPNMGGKST++RQ +I +MAQ+G +VP S A + Sbjct: 637 DVTFITNDVTLS----REDSSFLIITGPNMGGKSTYIRQIGVIALMAQIGCFVPCSSAEL 692 Query: 691 GIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSI 750 I D + +RVG++D+ G STFM EM+ETA+IL AT +S +I+DE+GRGT+T DG + Sbjct: 693 TIFDSILARVGASDSQLKGVSTFMAEMLETANILKSATAESLIIIDELGRGTSTYDGFGL 752 Query: 751 AWATIEYLHETNRCRGLLATHFHELTDLSK---SLKRFH-NATLQVSDSN---------- 796 AWA E++ + C L ATHFHELT L+ ++K H A + +D++ Sbjct: 753 AWAISEHIVKEIGCFALFATHFHELTALADQYPNVKNLHVTAHISGTDADTDADSEKEKK 812 Query: 797 -EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVI---SRAYDILKTF 839 + L+KV PG+ D S+GI V +L P V+ R D L+ F Sbjct: 813 KREVTLLYKVSPGVCDQSFGIHVAELVRFPEKVVRMAKRKADELEDF 859 >gi|448278|prf||1916402A mismatch repair protein Length = 1046 Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 236/884 (26%), Positives = 407/884 (46%), Gaps = 105/884 (11%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM-- 83 TP+ +Q ++K + D ++ R+G Y F +DA+ SR L I L + + P Sbjct: 162 TPLDKQVKDLKMHHRDKVLVIRVGYKY-CFAEDAVTVSRILHIKLVPGKLTIDESNPQDC 220 Query: 84 -------CGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKK---RGNKSLVRRNVVRL 133 C P N ++++L+ ++A+ EQ E+ K S+ R + + Sbjct: 221 NHRQFAYCSFPDVRLNVHLERLVHHNLKVAVVEQAETSAIKKHDPGASKSSVFERKISNV 280 Query: 134 VTPGT--------LTEDQLLSPTDSNYLMAVAR-----IRTEWAIAWIDISTGI-----F 175 T T L ++L D+N + A++R ++++ ++++ G F Sbjct: 281 FTKATFGVNSTFVLRGKRILG--DTNSIWALSRDVHQGKVAKYSLISVNLNNGEVVYDEF 338 Query: 176 KISTSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISES 235 + ++L I + P E++ + +L K + + Q DH + Sbjct: 339 EEPNLADEKLQIRIKYLQPIEVLVNTDDLPLHVAKFFKDISCPLIHKQEYDLEDHVVQAI 398 Query: 236 RIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSA 295 ++ + + S ++ + + Y Q++ P+I P I + +D Sbjct: 399 KVMN----EKIQLSPSLIRLVSKLYSHMVEY-NNEQVMLIPSIYSPFASKIH--MLLDPN 451 Query: 296 ARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFF- 354 + +L+I G + SL +D++ T G R+ E I PL D +I RLD+I Sbjct: 452 SLQSLDIFTHDGG--KGSLFWLLDHTRTSFGLRMLREWILKPLVDVHQIEERLDAIECIT 509 Query: 355 --IQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKND 412 I N I + ++L +PD+ R+L+R+ G K++ I S ++ + ++ Sbjct: 510 SEINNSIFFESLNQMLNHTPDLLRTLNRIMYGTTSRKEVYFYLKQITSFVDHFKMH-QSY 568 Query: 413 LPEELR---GAVEKLKKLPQSLEKTLSSMLS-DDLPTF---------------KRDGGFL 453 L E + G + K L L L+ +LS LP F K+ F Sbjct: 569 LSEHFKSSDGRIGKQSPLLFRLFSELNELLSTTQLPHFLTMINVSAVMEKNSDKQVMDFF 628 Query: 454 R-------DGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVT 506 +G E+ S+R Q K +A ++ KY +K + + + Y IEV Sbjct: 629 NLNNYDCSEGIIKIQRESESVRSQLKEELAEIR-KY-----LKRPYLNFRDEVDYLIEVK 682 Query: 507 SSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLI---ELESFE 563 +S KDL D +I ++RFTT L ++ + LLI EL+ E Sbjct: 683 NSQI----KDL--PDDWIKVNNTKMVSRFTTPRTQKLTQKLEYYKD--LLIRESELQYKE 734 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIV-KDGRHPIV 622 L+ E +E L + +A D ++LA + NY RP N I+ K+ R+PI+ Sbjct: 735 FLNKITAEYTE-LRKITLNLAQYDCILSLAATSCNVNYVRPTFVNGQQAIIAKNARNPII 793 Query: 623 EKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 E ++ ND +S N GK+ ++TGPNMGGKS+++RQ AL+ IMAQ+GS+ Sbjct: 794 ESL-----DVHYVPNDIMMSPEN----GKINIITGPNMGGKSSYIRQVALLTIMAQIGSF 844 Query: 683 VPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGT 742 VPA + I + + +R+G+ D++ +G STF VEM++ IL +S ++LDE+GRGT Sbjct: 845 VPAEEIRLSIFENVLTRIGAHDDIINGDSTFKVEMLDILHILKNCNKRSLLLLDEVGRGT 904 Query: 743 ATLDGLSIAWATIEYLHETNRCRGLL-ATHFHELTDLSKSLKR-FHNATLQVSDSNE--- 797 T DG++I++A I+Y E + C +L THF L ++ L R +H ++ + E Sbjct: 905 GTHDGIAISYALIKYFSELSDCPLILFTTHFPMLGEIKSPLIRNYHMDYVEEQKTGEDWM 964 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 +IFL+K+ G+ +SYG+ V KLA L +I+RA+ I + K Sbjct: 965 SVIFLYKLKKGLTYNSYGMNVAKLARLDKDIINRAFSISEELRK 1008 >gi|322701080|gb|EFY92831.1| DNA mismatch repair protein msh3 [Metarhizium acridum CQMa 102] Length = 1098 Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 231/886 (26%), Positives = 412/886 (46%), Gaps = 107/886 (12%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK---------- 75 TPM Q+++IK + D+++ +G + F +DA A++ LGI GK Sbjct: 197 TPMEIQFLDIKRKHLDTILIVEVGYKFRFFGEDARTAAKELGIVCIP-GKMRYDEHPSEA 255 Query: 76 HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSL-VRRNVVRLV 134 HL + VPVH + + ++L+ GH++ + QIE+ K N++ R + + Sbjct: 256 HLDR-FASASVPVHRLSVHAKRLVAAGHKVGVVRQIETAALKKAGDNRNTPFIRKLTNVY 314 Query: 135 TPGTLTED------QLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISD 188 T GT ++ Q YL+ + +++ + + GI + + D +I D Sbjct: 315 TKGTYIDEVGELDQQAEGAPAGGYLLCITETKSKGSGTDEKVDVGILAVQPATGD-IIYD 373 Query: 189 --------------IMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISE 234 ++ I P E + +L+ K + +++ + NVF D S E Sbjct: 374 NFEDGFMRSEIETRLLHISPCEFLIV-GDLTRGTDK----LVQHLSGSSTNVFGDRSRVE 428 Query: 235 ------SRIADYYNITT---VDTFGSFSQVEKTAA----------------AAAISYIKK 269 + A+ Y+ T D SQ E +A +A I+++K+ Sbjct: 429 RVPRPPTMAAEAYSHVTQFYADKLKDTSQNETASALLDKVLKLPEPVTICLSAMINHLKE 488 Query: 270 TQMVNKPTI-GYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSITGAGG 327 + + + Y + +S + ++ +LE+ R + E+ SL +D ++T G Sbjct: 489 YGLEHIFDLTKYFQSFTTRSHMLVNGTTLESLEVYRNSTDHAERGSLFWALDKTLTRFGQ 548 Query: 328 RLFAERIASPLTDSTKINTRLDSINFFI--QNPILINPIQKILKSSP-DVPRSLSRLKIG 384 RL + + PL D ++ RL ++ + Q+ ++ ++K+L ++ D+ RSL R+ G Sbjct: 549 RLLRKWVGRPLLDQDRLEERLAAVEELLNKQSTAPVDDLEKLLATTKIDLERSLIRIYYG 608 Query: 385 RG-EPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL 443 + P+ ++V++ + + ++ + P + LPQ L +S + +L Sbjct: 609 KCTRPELLSVLQTLQKIATHYSSIKSPSSNPFSSPLLATSINALPQILNTVVSYLERINL 668 Query: 444 PTFKRDG--GFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNN---- 497 ++D F R+ +T ++DQ + IA ++ + E K+ K+K Sbjct: 669 EAARKDDKYAFFREEY-----QTEDIQDQ-QMGIAHVEHELGEHLKVAAAKLKKKKVDYV 722 Query: 498 ---NLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 + + IEV +S +K S + ++RF T E++ + + + Sbjct: 723 TVAGIEFLIEVPNSD---IKNVPASWSKI---SGTKKVSRFHTPEVMRMISERDQHREAL 776 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTN--- 611 ++F+ L I + L +A +A +D ++L+ +A + Y RP S++ Sbjct: 777 AAACDKAFKNLLAEISSDYQPLRDAVSSLASLDCLLSLSKVAAQPGYHRPTFLPSSSEPT 836 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 + GRHPI E T++ +I L+ P S L+TGPNMGGKS+++R A Sbjct: 837 VAITQGRHPIAEHTIETG----YIPFSTTLAHP----SPLAHLITGPNMGGKSSYVRALA 888 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LIV++AQ+GS+VPA + + D + +R G+ DNL +G STFMVE+ ETA IL AT +S Sbjct: 889 LIVLLAQIGSFVPADAISLTLCDAIHTRTGARDNLFAGESTFMVEVSETARILRSATPRS 948 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 VI DE+GRGT+T DG +IA A +E++ RC L TH+ L + + L N ++ Sbjct: 949 LVIFDELGRGTSTHDGAAIAQAVLEHVATETRCLTLFITHYQNLARVVEGLPGVSNLHMK 1008 Query: 792 VS-----DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 D +E I FL++V G+A SYG+ V +LA +P VI A Sbjct: 1009 FKAGKGPDGDEEITFLYEVGEGVAHRSYGLNVARLARIPKKVIDVA 1054 >gi|301753265|ref|XP_002912468.1| PREDICTED: DNA mismatch repair protein Msh2-like [Ailuropoda melanoleuca] gi|281352642|gb|EFB28226.1| hypothetical protein PANDA_000218 [Ailuropoda melanoleuca] Length = 934 Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 174/580 (30%), Positives = 275/580 (47%), Gaps = 62/580 (10%) Query: 285 DIQSTLFIDSAARSNLEILRTLSGSRE-----QSLLKTIDYSITGAGGRLFAERIASPLT 339 D + +D AA + L GS E QSL ++ T G RL + I PL Sbjct: 295 DFSQYMKLDIAA---VRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLM 351 Query: 340 DSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 D +I RL+ + F+++ L +Q+ +L+ PD+ R + + +D + GI Sbjct: 352 DKNRIEERLNLVEAFVEDAELRQSLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGI 411 Query: 399 RSGINILNLFLKNDLPEE-------------LRGAVEKLKKLPQSLEKTLSSMLSDDLPT 445 N++ K + + LR K +++ +E TL D+ Sbjct: 412 NQLPNVIQALEKYEGKHQSLLLAVFVTPLIDLRSDFSKFQEM---IETTL------DMDQ 462 Query: 446 FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYF 502 + ++ D +L E R + D ++ + S + A + + K +K+ + GY+ Sbjct: 463 VENHEFLVKPSFDPNLSELREIMDDLEKKMQSTLVSAARDLGLDPGKQIKLDSSAQFGYY 522 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT-NAT-----NSALL 556 VT VL+ + F N +FT +L L T N T A++ Sbjct: 523 FRVTCKEEKVLRNN----KNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIV 578 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAIL--AKEQNYCRPII--DNSTNF 612 E+ + +S+ +E ++L++ V+A +D ++ A + A Y RP+I Sbjct: 579 KEIVN---ISSGYVEPMQTLND---VLAQLDAVVSFAHVSNAAPVPYVRPVILEKGQGRI 632 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 +K RH VE Q FI ND +K+ ++TGPNMGGKST++RQ + Sbjct: 633 TLKASRHACVEV----QDEVAFIPNDVHF----EKDKQMFHIITGPNMGGKSTYIRQTGV 684 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 IV+MAQ+G +VP A + IVD + +RVG+ D+ G STFM EM+ETASIL AT S Sbjct: 685 IVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSL 744 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 +I+DE+GRGT+T DG +AWA EY+ + ATHFHELT L+ + +N + Sbjct: 745 IIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTA 804 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 + E + L++V G+ D S+GI V +LA P VI A Sbjct: 805 LTTEETLTMLYQVKKGVCDQSFGIHVAELANFPRHVIECA 844 >gi|296223913|ref|XP_002757838.1| PREDICTED: DNA mismatch repair protein Msh2-like [Callithrix jacchus] Length = 841 Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 175/583 (30%), Positives = 274/583 (46%), Gaps = 68/583 (11%) Query: 285 DIQSTLFIDSAARSNLEILRTLSGSRE-----QSLLKTIDYSITGAGGRLFAERIASPLT 339 D + +D AA + L GS E QSL ++ T G RL + I PL Sbjct: 202 DFSQYMKLDIAA---VRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLL 258 Query: 340 DSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 D +I RL+ + F+++ L +Q+ +L+ PD+ R + +D + GI Sbjct: 259 DKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFLRQAANLQDCYRLYQGI 318 Query: 399 RSGINILNLFLKNDLPEELRGAVEKL----------------KKLPQSLEKTLSSMLSDD 442 N++ E+ G +KL K + +E TL D Sbjct: 319 NQLPNVIQAL------EKYEGKHQKLLLAVFVTPLTDLRSDFSKFQEMIETTL------D 366 Query: 443 LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNL 499 + + ++ D +L E R + + ++ + S + A + + K +K+ + Sbjct: 367 MDQVENHEFLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQF 426 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT-NAT-----NS 553 GY+ VT VL+ + F N +FT +L L T N T Sbjct: 427 GYYFRVTCKEEKVLRNN----KNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQD 482 Query: 554 ALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN--YCRPII--DNS 609 A++ E+ + +S+ +E ++L++ V+A +D ++ A ++ Y RP+I Sbjct: 483 AIVKEIVN---ISSGYVEPMQTLND---VLAQLDAVVSFAHVSNGAPVPYVRPVILEKGQ 536 Query: 610 TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQ 669 I+K RH VE Q FI ND +KN ++TGPNMGGKST++RQ Sbjct: 537 GRIILKASRHACVEV----QDEVAFIPNDVYF----EKNKQMFHIITGPNMGGKSTYIRQ 588 Query: 670 NALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATN 729 +IV+MAQ+G +VP A + IVD + +RVG+ D+ G STFM EM+ETASIL AT Sbjct: 589 TGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATK 648 Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNAT 789 S +I+DE+GRGT+T DG +AWA EY+ + ATHFHELT L+ + +N Sbjct: 649 DSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLH 708 Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 + + E + L++V G+ D S+GI V +LA P VI A Sbjct: 709 VTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECA 751 >gi|325087831|gb|EGC41141.1| DNA mismatch repair protein [Ajellomyces capsulatus H88] Length = 1178 Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 215/867 (24%), Positives = 373/867 (43%), Gaps = 124/867 (14%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 +P +QY EIK D++VF++ G FYEL+ +DA + + + LT R ++ M G Sbjct: 324 SPFEKQYWEIKQKFWDTIVFFKKGKFYELYENDATIGHQLFDLKLTDR-----VNMRMVG 378 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL--EAKKRGNKS---------LVRRNVVRLV 134 VP + +H+ + + G +IA +Q ES L E +++ KS ++RR + ++ Sbjct: 379 VPEMSLDHWANQFVAKGFKIARVDQSESALGKEMREKQGKSNGTPGKQDKIIRRELSCVL 438 Query: 135 TPGTLTEDQLLSPTDSNYLMAVARIRTE----WAIAWIDISTGIFK----ISTSNHDRLI 186 T GTL + +L S Y +A+ + IA++D +TG F I ++ + Sbjct: 439 TSGTLVDGSMLQDDMSTYCVAIKEALVNDLPAFGIAFVDTATGQFYLAEFIDDADMTKFE 498 Query: 187 SDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAV----AQPNVFF--DHSISESRIADY 240 + + + P+E++ + +S + L G + F+ D ++ E ++Y Sbjct: 499 TFVAQTRPQELLLEKSVMSTKALRILKNNTGPTTLWNYLKSCKEFWEADVTVRELDASNY 558 Query: 241 YNITTVDTFGSFSQVEK---------TAAAAAISYIKKTQMVNK-PTIG-YPEREDIQ-- 287 + D ++ + + +A A + Y++ ++ TIG + + I+ Sbjct: 559 FVSEEGDNIAAWPEALRQARDKEFVMSAFGALVQYLRMLKIERDLITIGNFTWYDPIKKA 618 Query: 288 STLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINT 346 ++L +D NLEI + G +E +L ++ IT G RLF + + PL D+ KIN Sbjct: 619 TSLVLDGQTLINLEIFANSFDGGQEGTLFHLLNRCITPFGKRLFKQWVCHPLMDTRKINA 678 Query: 347 RLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILN 406 RLD+++ + + N L PD+ R +SR+ GR + +D + +G + Sbjct: 679 RLDAVDALNADSSVQNQFSSQLTKMPDLERLISRVHAGRCKAQDFLHVLEGFEKIDYTMG 738 Query: 407 LFLKNDLPE----ELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLD 462 L + E +L ++ L Q + + D + G D DAS D Sbjct: 739 LLKEIGSGEGAIGQLVASMPDLSGYLQYWKTAFDRTKAKDSSILVPEAGVEED-FDASHD 797 Query: 463 ETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDR 522 + R++ ++ K + + N Y +EV +V K Sbjct: 798 RISEIESDLDRLLKEVRKKLGSNAIV----YRDNGKEIYQLEVPIKIKNVPKD------- 846 Query: 523 FIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQV 582 + RF EL L ++ A + I E E + A + Sbjct: 847 WDQMSATKQAKRFYFPELRSLIRQLQEAQETHSQIVKEVASRFYARFDENYSTWLAAVRT 906 Query: 583 IAIIDISIALAILAKEQNY--CRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCD 640 IA +D I+LA + Y CRP+ V D R + + L+ S Sbjct: 907 IAQLDCLISLAKASSALGYPSCRPVF-------VDDERSVLEFEELRHPS---------- 949 Query: 641 LSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRV 700 VIMAQ+G YVP A + VD++ SR+ Sbjct: 950 ---------------------------------VIMAQIGCYVPCQSARLTPVDRIMSRL 976 Query: 701 GSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHE 760 G+ DN+ + +STF VE+ ET IL++AT +S VILDE+GRGT++ DG+++A A + ++ Sbjct: 977 GANDNIFASQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVLHHVAT 1036 Query: 761 TNRCRGLLATHFHELT-------DLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHS 813 G ATH+H L +++ R H V + + FL+K+ GIA+ S Sbjct: 1037 HIGALGFFATHYHSLASEFEGHPEIAPRRMRIH-----VDEEERRVTFLYKLEEGIAEGS 1091 Query: 814 YGIQVGKLAGLPNTVISRAYDILKTFE 840 +G+ + G+PN V+ RA K +E Sbjct: 1092 FGMHCASMCGIPNKVVERAEIAAKQWE 1118 >gi|326473055|gb|EGD97064.1| DNA mismatch repair protein Msh2 [Trichophyton tonsurans CBS 112818] Length = 935 Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 184/611 (30%), Positives = 301/611 (49%), Gaps = 67/611 (10%) Query: 259 AAAAAISYIKKTQMVNKPTIGYPE--REDIQSTLFIDSAARSNLEILRTLSGSREQ---- 312 +A+A ISY+ M + G + + D+ + +D++A L L + G R+ Sbjct: 263 SASALISYL--NAMSDPSNFGQYQLYKHDLAQYMKLDASA---LRALNLMPGPRDSMKNM 317 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK-ILKSS 371 SL +++ T GGRL A+ + PL + I R + F+ + L +Q+ L+S Sbjct: 318 SLYGLLNHCKTPVGGRLLAQWLKQPLMNHKDIEKRQQLVEAFVIDTELRQTMQENHLRSI 377 Query: 372 PDVPRSLSRLKIGRGEPKDIA-----VIRDGIRSGINILNLFLKNDLPEELRGA-VEKLK 425 PD+ R R + G+ +D+ VIR I IN + L +KL+ Sbjct: 378 PDLYRLAKRFQRGKANLEDVVRVYQVVIR--IPGFINSFEGVMDEQYQTPLDAEYTDKLR 435 Query: 426 KLPQSLEKTLSSMLSD--DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 KL Q L K L+ M+ DL ++ D SL R +R + ++ + ++ Sbjct: 436 KLSQDLGK-LAEMVETTVDLEALDNHEFIIKPEFDDSL---RIIRKKLDKLRHDMDSEHR 491 Query: 484 EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDL 543 +T+ K L ++++ G+ +T + A ++ +K + T N FTT + L Sbjct: 492 RDTE-KKLFLENHRVHGWCFRLTRNEAGCIR----NKREYQECSTQKNGVYFTTSTMQAL 546 Query: 544 ENRIT------NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAK 597 N T + L+ E+ + ++EQ + ++A +D+ ++ A ++ Sbjct: 547 RREHDQLSMNYNRTQTGLVSEVVNVAASYCPLLEQ------LAGILAHLDVIVSFAHVSA 600 Query: 598 EQ--NYCRPIID--NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLW 653 Y RP I + N I+K+ RHP +E Q FI ND L ++ Sbjct: 601 HAPTAYVRPKIHPRGTGNTILKEARHPCME----MQDDITFITNDVSLI----RDESSFL 652 Query: 654 LLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTF 713 ++TGPNMGGKST++RQ +I +MAQ G +VP S A + I D + +RVG++D+ G STF Sbjct: 653 IITGPNMGGKSTYIRQIGVIALMAQTGCFVPCSEAELTIFDSILARVGASDSQLKGVSTF 712 Query: 714 MVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFH 773 M EM+ETA+IL AT++S +I+DE+GRGT+T DG +AWA E++ +C L ATHFH Sbjct: 713 MAEMLETANILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIVTEIKCFSLFATHFH 772 Query: 774 ELTDLS----KSLKRFH-NATLQVSDSNEG-------IIFLHKVIPGIADHSYGIQVGKL 821 ELT L K++ H A + + EG + L++V PG+ D S+GI V +L Sbjct: 773 ELTALEERYPKAVSNLHVVAFIGDGPAAEGKQKKKQEVTLLYRVEPGVCDQSFGIHVAEL 832 Query: 822 AGLPNTVISRA 832 P+ V++ A Sbjct: 833 VRFPDKVVNMA 843 >gi|303310697|ref|XP_003065360.1| DNA mismatch repair protein msh-2, putative [Coccidioides posadasii C735 delta SOWgp] gi|240105022|gb|EER23215.1| DNA mismatch repair protein msh-2, putative [Coccidioides posadasii C735 delta SOWgp] gi|320034786|gb|EFW16729.1| DNA mismatch repair protein Msh2 [Coccidioides posadasii str. Silveira] Length = 941 Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 186/627 (29%), Positives = 299/627 (47%), Gaps = 63/627 (10%) Query: 248 TFGSFSQVE-KTAAAAAISYIKKTQMVNKPT-IGYPE--REDIQSTLFIDSAARSNLEIL 303 T G+ Q + K A AA + IK ++ P+ G + + D+ + +DSAA L ++ Sbjct: 248 TAGTLPQTDLKLAMGAAAALIKYLGAMSDPSNFGQYQLYQHDLSQYMKLDSAALRALNLM 307 Query: 304 -RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILIN 362 G + SL +++ T GGRL A+ + PL + I R + F+ + L Sbjct: 308 PGPRDGVKSMSLYGLLNHCKTPVGGRLLAQWLKQPLMNHEDIEKRQQLVEAFVSDTELRQ 367 Query: 363 PIQK-ILKSSPDVPRSLSRLKIGRGEPKDIA-----VIRDGIRSGINILNLFLKNDLPEE 416 +Q+ L+S PD+ R + + +D+ VIR + IN L + E Sbjct: 368 TMQEDHLRSIPDLYRLAKKFQRNAATLEDVVRIYQVVIR--LPGFINTLEAVMDEQYQEP 425 Query: 417 LRGA-VEKLKKLPQSLEKTLSSMLSD--DLPTFKRDGGFLRDGADASLDETRSLRDQSKR 473 L K++ L S K L+ M+ DL ++ D SL R D+ + Sbjct: 426 LEEEYTSKIRNLSNSFGK-LAEMVETTVDLEALDHHEFIIKPEFDESLRIIRKKLDKLRY 484 Query: 474 IIASLQLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMS 530 + + + + K L ++ + G+ +T + A ++ +K + T Sbjct: 485 DMDAEHRRVGRDLNQDTEKKLFLEDHRVHGWCFRLTRNEAGCIR----NKREYQECSTQK 540 Query: 531 NLTRFTTLELIDLE------NRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 N FTT + L ++ N T + L+ E+ + ++EQ + V+A Sbjct: 541 NGVYFTTSTMQSLRREHDQLSQNYNRTQTGLVNEVVNVAASYCPLLEQ------LAGVLA 594 Query: 585 IIDISIALAILA--KEQNYCRPIID--NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCD 640 +D+ ++ A ++ Y RP + + N I+K+ RHP +E Q FI ND Sbjct: 595 HLDVIVSFAHVSVHAPTPYVRPKVHPRGTGNTILKEARHPCME----MQDDISFITNDVS 650 Query: 641 LSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRV 700 L +N ++TGPNMGGKST++RQ ++ +MAQ G +VP S A + I D + +RV Sbjct: 651 LV----RNESSFLIITGPNMGGKSTYIRQIGVVALMAQTGCFVPCSEAELTIFDCILARV 706 Query: 701 GSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHE 760 G++D+ G STFM EM+ETA+IL AT++S +I+DE+GRGT+T DG +AWA E++ Sbjct: 707 GASDSQLKGVSTFMAEMLETANILKTATSESLIIIDELGRGTSTYDGFGLAWAISEHIIT 766 Query: 761 TNRCRGLLATHFHELTDLSK----SLKRFHNATL---QVSDSNEG--------IIFLHKV 805 RC GL ATHFHELT L + S+K H VSD + L++V Sbjct: 767 EIRCFGLFATHFHELTALEERYPNSVKNLHVVAFIGDNVSDKQNNTASKKKREVTLLYRV 826 Query: 806 IPGIADHSYGIQVGKLAGLPNTVISRA 832 PG+ D S+GI V +L P V++ A Sbjct: 827 EPGVCDQSFGIHVAELVRFPEKVVNMA 853 >gi|324506957|gb|ADY42957.1| DNA mismatch repair protein MSH2 [Ascaris suum] Length = 414 Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 135/366 (36%), Positives = 200/366 (54%), Gaps = 20/366 (5%) Query: 485 ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLE 544 E K+ K+ N G+F VT + +K + I T + RFT+ L L Sbjct: 27 EISQKSAKLDSNPQYGFFFRVTLKA----EKSIRQAGLKILETTKGSGVRFTSKALEALN 82 Query: 545 NRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN--YC 602 N + E +++ + +L S+ +A+ID+ +A A LA Y Sbjct: 83 NEYKELQKQYDSSQSELIKMVIETCAGYAPALQQLSECLAVIDVLVAFATLATLSPFPYS 142 Query: 603 RP-IIDNSTNFIV-KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 RP +ID + +V K RHP++E + PFI ND L N ++S + LLTG NM Sbjct: 143 RPQLIDKESRVLVLKSCRHPVLEAL---PEAPPFIPNDV-LMGENPEDSTRFLLLTGANM 198 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GGKST+LR AL V+M QMG +VP YA ++D + +R+GS D G STFM EMI++ Sbjct: 199 GGKSTYLRSCALCVLMGQMGCFVPCEYAKFSLIDGIHTRIGSCDYQCKGVSTFMAEMIDS 258 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 ASIL AT++S V++DE+GRGT+T DG +AWA + + +C + ATHFHE++ L Sbjct: 259 ASILEAATSKSLVVVDELGRGTSTYDGFGLAWAIADDILARIKCLCIFATHFHEMSALH- 317 Query: 781 SLKRFHNATLQVS-----DSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI 835 +R+ NA + D N +I L+KV+PGIA+ S+GI + KL G+ + +I A + Sbjct: 318 --ERYPNALRNIRVETQIDENGELILLYKVMPGIAERSFGINIAKLVGISDDIIEEAEVM 375 Query: 836 LKTFEK 841 L+ EK Sbjct: 376 LQKLEK 381 >gi|332019050|gb|EGI59582.1| DNA mismatch repair protein Msh2 [Acromyrmex echinatior] Length = 857 Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 177/575 (30%), Positives = 278/575 (48%), Gaps = 64/575 (11%) Query: 292 IDSAARSNLEI------LRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKIN 345 +DSAA L I + TL G+ S+L +D T G RL A+ + PL D + I Sbjct: 233 LDSAAMKALNIEPHTDTIPTLHGNSVASILTLLDKCRTAQGHRLIAQWVRQPLKDLSLIK 292 Query: 346 TRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI------ 398 R D + ++N L + + LK PD+ + +L + +D I I Sbjct: 293 ERHDIVELLVKNNELRSTLSDDYLKRIPDLQQLAKKLARKKLTLQDCYKIYLCISYLPKL 352 Query: 399 ------RSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKT--LSSMLSDDL---PTFK 447 + LN + E L+ +E + K Q +E+T L + D P F Sbjct: 353 LEQLLLEKNVTTLNTMI----IEPLKELIEDMDKFQQLIEQTIDLDAAEKGDFMVNPGFA 408 Query: 448 RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTS 507 D L+D D L+ET ++ Q + L ++ K +K++ N LGY+ +T Sbjct: 409 DDLKTLKDAMD-ELEET--IQKQLSKAANDLCMEAG-----KMIKLECNQQLGYYFRITL 460 Query: 508 SSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL----IELESFE 563 +L+ +K + + RF +L +L + +A N L + +E E Sbjct: 461 KEEKILR----NKKHYTILDSNKAGVRFRNNKLNELNDDFLDARNKYLERQKDVIVEIVE 516 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN--YCRPII----DNSTNFIVKDG 617 I + SE++ + V+A +D+ A + A N Y RP + + N I Sbjct: 517 IAAG----YSETVRSIGGVLACLDVLTAFSSAAVSANKVYVRPKMVPSEEGELNLI--QV 570 Query: 618 RHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA 677 RHP +E Q +IAND ++ +++TGPNMGGKST++R + +MA Sbjct: 571 RHPCLE----MQQGVDYIANDIIFK----RDQCHFYIITGPNMGGKSTYIRSVGVTALMA 622 Query: 678 QMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDE 737 +GS+VP A I ++D + +RVG+ D+ G STFM+EMIETA+IL AT S VI+DE Sbjct: 623 HIGSFVPCDEATISLLDCILARVGADDSQLKGLSTFMMEMIETAAILKTATCNSLVIIDE 682 Query: 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNE 797 +GRGT+T +G IAW+ E+L + L ATHFHE+T L++ + N + ++ Sbjct: 683 LGRGTSTYEGCGIAWSIAEHLARNIKSYCLFATHFHEITKLAEEIPAVKNQHVTALVEDD 742 Query: 798 GIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 + L+KV+PGI D S+G+ V K+A P+ VI A Sbjct: 743 KLTLLYKVMPGICDQSFGLHVAKMANFPSDVIEFA 777 >gi|194220750|ref|XP_001917820.1| PREDICTED: similar to MutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli) [Equus caballus] Length = 935 Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 187/657 (28%), Positives = 302/657 (45%), Gaps = 70/657 (10%) Query: 285 DIQSTLFIDSAARSNLEILRTLSGSRE-----QSLLKTIDYSITGAGGRLFAERIASPLT 339 D + +D AA + L GS E QSL ++ T G RL + I PL Sbjct: 296 DFSQYMKLDIAA---VRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLM 352 Query: 340 DSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 D +I RL+ + F+++ L +Q+ +L+ PD+ R + + +D + GI Sbjct: 353 DKNRIEERLNLVEAFVEDAELRQSLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGI 412 Query: 399 RSGINILNLFLKNDLPEE-------------LRGAVEKLKKLPQSLEKTLSSMLSDDLPT 445 N++ K + + LR K +++ +E TL D+ Sbjct: 413 NQLPNVIQALEKYEGKHQTLLLAVFVTPLIDLRSDFSKFQEM---IETTL------DMDQ 463 Query: 446 FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYF 502 + ++ D +L E R + D ++ + S + A + + K +K+ + GY+ Sbjct: 464 VENHEFLVKPSFDPNLSELREIMDDLEKKMQSTLISAARDLGLDPGKQIKLDSSTQFGYY 523 Query: 503 IEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT-NAT-----NSALL 556 VT VL+ + F N +FT +L L T N T A++ Sbjct: 524 FRVTCKEEKVLRNN----KNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIV 579 Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN--YCRPII--DNSTNF 612 E+ + +S+ +E ++L++ V+A +D ++ A ++ Y RP+I Sbjct: 580 KEIVN---ISSGYVEPMQTLND---VLAQLDAVVSFAHVSNGAPVPYVRPVILEKGQGRI 633 Query: 613 IVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNAL 672 ++ RH VE Q FI ND +K+ ++TGPNMGGKST++RQ + Sbjct: 634 TLRASRHACVEV----QDEVAFIPNDVHF----EKDKQMFHIITGPNMGGKSTYIRQTGV 685 Query: 673 IVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSF 732 IV+MAQ+G +VP A + IVD + +RVG+ D+ G STFM EM+ETASIL AT S Sbjct: 686 IVLMAQIGCFVPCESAEVTIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSL 745 Query: 733 VILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV 792 +I+DE+GRGT+T DG +AWA EY+ + ATHFHELT L+ + +N + Sbjct: 746 IIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTA 805 Query: 793 SDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRL 852 + E + L++V GI D S+GI V +LA P VI A E+ + + Sbjct: 806 LTTEETLTMLYQVKKGICDQSFGIHVAELANFPRHVIECAKQKALELEEFQNIGESQ--- 862 Query: 853 YYPEIQTKESKNNLSKND-----KLFVEKIKCLNLDEMSPLTALKTLYAVKAWTLEK 904 Y E++ + L + + F+ K+K + EMS L +KA + K Sbjct: 863 EYDEMEPAAKRCYLEREQGEKIIQEFLSKVKQVPFTEMSEENITIKLKQLKAEVIAK 919 >gi|168010740|ref|XP_001758062.1| predicted protein [Physcomitrella patens subsp. patens] gi|162690939|gb|EDQ77304.1| predicted protein [Physcomitrella patens subsp. patens] Length = 1109 Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 238/938 (25%), Positives = 411/938 (43%), Gaps = 175/938 (18%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ Q +E+K PD L+ +G + F +DA A+R LGI L IP Sbjct: 115 TPLELQVLELKERYPDVLLMIEVGYKFRFFGNDAETAARVLGIFAYYNHNFLSASIPTFR 174 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKS-LVRRNVVRLVTPGTL----- 139 + VH +++L++ G+++ + Q E+ NKS R + L T TL Sbjct: 175 LHVH-----VRRLVEAGYKVGVVRQTETAAIKAHGTNKSGPFTRGLSALYTRATLEAAED 229 Query: 140 ----TEDQLLSPTDSNYLMAVARIRTEWAIA-----WIDISTGIFKISTSNHDRLISD-- 188 TED + +YLM +A + + D G+ + + D + D Sbjct: 230 LGGDTEDHV--GRLHSYLMCIAEDPILQGLGSSKSGYYDARLGVVAVDPATGDVMFGDFK 287 Query: 189 --IMR---------IDPREIIFSEKELSHAEYKSLFETLGNV-----------------A 220 +MR P E++ + LS A K + E G A Sbjct: 288 DSVMRNELEALLLTCAPAELLLA-TPLSAATEKLVIEHAGPASDVRIERISRDCFRDGGA 346 Query: 221 VAQPNVFFDHSISESRIADYYNITTVDT-----FGSFSQVEKTAAAA-----------AI 264 +A+ F+ S E AD VD F S + TA A A+ Sbjct: 347 LAEVIAFYK-SKGEDDAADSVEDEKVDPGLEVLFLFTSPIYFTAVMAMPDIVMQSLALAL 405 Query: 265 SYIKKTQMVNKPTIGYPEREDI-QSTLFIDSAARSNLEILRT-LSGSREQSLLKTIDYSI 322 Y+++ M +G R S + + A LEILR G+ + +LL +D++ Sbjct: 406 RYLRQFGMEKVLKLGASFRRFAGHSEMSLSPNALRQLEILRNNADGTNKGTLLWLMDHTH 465 Query: 323 TGAGGRLFAERIASPLTDS----------TKINTRLDSINF----------------FIQ 356 T G RL + PL D T+I + S+ + Sbjct: 466 TLFGARLMRHWVTHPLQDEGLIAARLDAVTEIAESMGSVGVAQGHGSFPGSGRGGGNVGK 525 Query: 357 NPILINPIQKILKSSPDVPRSLSRLKIGRGEPKD-IAVIRDGIRSGINILNLF------- 408 +L++ + + K PDV R ++R+ + + ++V++ I++ + L Sbjct: 526 QGLLVSLLMSLGKL-PDVERGITRIFLRTATAAEFVSVVQGLIKASRQLRQLHFDHKDSD 584 Query: 409 --LKNDLPEELRGAV--------------EKLKKLPQSLEKTLSSMLSDDLPTFK-RDGG 451 L + P+ ++ ++ E +L SL+ T ++ D L F RDG Sbjct: 585 MELDDVHPKSVKSSLMRRLVAAASSVSVSEPAAQLLSSLD-TDAAASGDKLKLFHCRDGK 643 Query: 452 F-----LRDGADASLDETRSLRDQSKRIIASLQLKY---AEETKIKNLKIKHNNNLGYFI 503 F R +A + L ++++ S +L+Y + T + + + H + I Sbjct: 644 FPEVKNCRLAIEAIEQQLEDLLPNIRKVLKSPRLEYMSVSGTTHLIQMPVAHRVPANW-I 702 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 +V S+ A + R+ E+++ + +T A + +++ Sbjct: 703 KVNSTKA---------------------MHRYHPPEVLEALDALTLAKEELSIACGRAWD 741 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII---DNSTNFIVKDGRHP 620 + A Q +A +D +LAI+++ Q Y RP + + ++ GRHP Sbjct: 742 AFLAEFASHYVAFRAAVQALAALDCLHSLAIVSRNQGYVRPEFVGKCDPSQLLITAGRHP 801 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 +++ TL+ F+ ND L DK + ++TGPNMGGKS ++RQ ALI IMAQ+G Sbjct: 802 VLDATLQDG----FVPNDTYLQA--DKE--RCQIITGPNMGGKSCYIRQVALITIMAQVG 853 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 SYVPA+ A + + D +F+R+G++D++ G STF E+ ET+SIL +AT++S VI+DE+GR Sbjct: 854 SYVPATSAKLHVCDAVFTRMGASDSIQKGSSTFFEELSETSSILRRATSRSLVIIDELGR 913 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK----SLKRFHNATLQ----- 791 GT+T DG++IA+AT+ +L + RC TH+ + DL ++ ++ + L Sbjct: 914 GTSTHDGVAIAYATLHHLLKEIRCLTFFVTHYPRIADLKDEFPGNVSPYYVSYLAEELRY 973 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVI 829 ++ + I FL+K++PG+A S+G+ V +LA LP + Sbjct: 974 AEEATQKITFLYKLVPGVASRSFGLHVARLAQLPEVCV 1011 >gi|327308508|ref|XP_003238945.1| DNA mismatch repair protein Msh2 [Trichophyton rubrum CBS 118892] gi|326459201|gb|EGD84654.1| DNA mismatch repair protein Msh2 [Trichophyton rubrum CBS 118892] Length = 942 Score = 224 bits (570), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 179/620 (28%), Positives = 297/620 (47%), Gaps = 78/620 (12%) Query: 259 AAAAAISYIKKTQMVNKPTIGYPE--REDIQSTLFIDSAARSNLEILRTLSGSREQ---- 312 +A+A ISY+ M + G + + D+ + +D++A L L + G R+ Sbjct: 263 SASALISYL--NSMSDPSNFGQYQLYKHDLAQYMKLDASA---LRALNLMPGPRDSMKNM 317 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK-ILKSS 371 SL +++ T GGRL A+ + PL + I R + F+ + L +Q+ L+S Sbjct: 318 SLYGLLNHCKTPVGGRLLAQWLKQPLMNHKDIEKRQQLVEAFVTDTELRQTMQENHLRSI 377 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF-----------LKNDLPEELRGA 420 PD+ R R + G+ +D+ + + +N F L + ++LR Sbjct: 378 PDLYRLAKRFQRGKANLEDVVRVYQVVIRIPGFINSFEGVMDEQYQTPLDAEYTDKLRKL 437 Query: 421 VEKLKKLPQSLEKTLSSMLSDD-----LPTFKRDGGFLRDGADASLDETRSLRDQSKRII 475 + L KL + +E T+ D+ P F +R LD+ R D R + Sbjct: 438 SQDLGKLAEMVETTVDLEALDNHEFIIKPEFDDSLRIIRK----KLDKLRHDMDSEHRRV 493 Query: 476 ASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRF 535 ++T+ K L ++++ G+ +T + A ++ +K + T N F Sbjct: 494 GR---DLGQDTE-KKLFLENHRVHGWCFRLTRNEAGCIR----NKREYQECSTQKNGVYF 545 Query: 536 TTLELIDLENRIT------NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDIS 589 TT + L N T + L+ E+ + ++EQ + ++A +D+ Sbjct: 546 TTSTMQALRREHDQLSMNYNRTQTGLVGEVVNVAASYCPLLEQ------LAGILAHLDVI 599 Query: 590 IALAILAKEQ--NYCRPIID--NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPN 645 ++ A ++ Y RP I + N I+K+ RHP +E Q FI ND L Sbjct: 600 VSFAHVSAHAPTAYVRPKIHPRGTGNTILKEARHPCME----MQDDITFITNDVSLI--- 652 Query: 646 DKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADN 705 ++ ++TGPNMGGKST++RQ +I +MAQ G +VP S A + I D + +RVG++D+ Sbjct: 653 -RDESSFLIITGPNMGGKSTYIRQIGVIALMAQTGCFVPCSEAELTIFDSILARVGASDS 711 Query: 706 LASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCR 765 G STFM EM+ETA+IL AT++S +I+DE+GRGT+T DG +AWA E++ +C Sbjct: 712 QLKGVSTFMAEMLETANILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIVTEIKCF 771 Query: 766 GLLATHFHELTDLS----KSLKRFHNATLQVSDS---------NEGIIFLHKVIPGIADH 812 L ATHFHELT L K++ H + D N+ + L++V PG+ D Sbjct: 772 SLFATHFHELTALEERYPKAVSNLHVVAF-IGDGPAAEGKQKKNQEVTLLYRVEPGVCDQ 830 Query: 813 SYGIQVGKLAGLPNTVISRA 832 S+GI V +L P+ V++ A Sbjct: 831 SFGIHVAELVRFPDKVVNMA 850 >gi|73969550|ref|XP_538482.2| PREDICTED: similar to DNA mismatch repair protein Msh2 (MutS protein homolog 2) isoform 1 [Canis familiaris] Length = 934 Score = 224 bits (570), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 180/615 (29%), Positives = 290/615 (47%), Gaps = 66/615 (10%) Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPERE----DIQSTLFIDSAARSNLEILRTLSGS 309 ++E AA+A+S + K + + + E D + +D AA + L GS Sbjct: 260 EMENQVAASALSAVIKFLELLSDDSNFGQYELTTFDFSQYMKLDIAA---VRALNLFQGS 316 Query: 310 RE-----QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPI 364 E QSL ++ T G RL + I PL D +I RL+ + F+++ L + Sbjct: 317 VEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQSL 376 Query: 365 QK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEE------- 416 Q+ +L+ PD+ R + + +D + GI N++ K + + Sbjct: 377 QEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIRALEKYEGKHQGLLLAVF 436 Query: 417 ------LRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQ 470 LR K +++ +E TL D+ + ++ D +L E R + D Sbjct: 437 VTPLIDLRSDFSKFQEM---IETTL------DMDQVENHEFLVKPSFDPNLSELREIMDD 487 Query: 471 SKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQ 527 ++ + S + A + + K +K+ + GY+ VT VL+ + F Sbjct: 488 LEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNN----KNFSTVD 543 Query: 528 TMSNLTRFTTLELIDLENRIT-NAT-----NSALLIELESFEILSNAIIEQSESLDNASQ 581 N +FT +L L T N T A++ E+ + +S+ +E ++L++ Sbjct: 544 IQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVN---ISSGYVEPMQTLND--- 597 Query: 582 VIAIIDISIALAILAKEQN--YCRPII--DNSTNFIVKDGRHPIVEKTLKQQSSKPFIAN 637 V+A +D ++ A ++ Y RP+I +K RH VE Q FI N Sbjct: 598 VLAQLDAVVSFAHVSNGAPVPYVRPVILEKGQGRITLKASRHACVEV----QDEVAFIPN 653 Query: 638 DCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLF 697 D +K+ ++TGPNMGGKST++RQ +IV+MAQ+G +VP A + IVD + Sbjct: 654 DVHF----EKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCIL 709 Query: 698 SRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEY 757 +RVG+ D+ G STFM EM+ETASIL AT S +I+DE+GRGT+T DG +AWA EY Sbjct: 710 ARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEY 769 Query: 758 LHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQ 817 + + ATHFHELT L+ + +N + + E + L++V G+ D S+GI Sbjct: 770 IATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIH 829 Query: 818 VGKLAGLPNTVISRA 832 V +LA P VI A Sbjct: 830 VAELANFPRHVIECA 844 >gi|261206138|ref|XP_002627806.1| DNA mismatch repair protein msh-2 [Ajellomyces dermatitidis SLH14081] gi|239592865|gb|EEQ75446.1| DNA mismatch repair protein msh-2 [Ajellomyces dermatitidis SLH14081] Length = 966 Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 184/618 (29%), Positives = 300/618 (48%), Gaps = 71/618 (11%) Query: 259 AAAAAISYIKKTQMVNKPTIGYPE--REDIQSTLFIDSAARSNLEIL-RTLSGSREQSLL 315 +AAA I Y+ M + G + + D+ + +D+ A L ++ G++ SL Sbjct: 287 SAAALIKYLGA--MSDATNFGQYQLYQHDLSQYMKLDAPALRALNLMPGPRDGAKNMSLY 344 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDV 374 +++ T AG RL A+ + PL + I R + F+ + L +Q+ L+S PD+ Sbjct: 345 GLLNHCKTPAGSRLLAQWLKQPLMNHEDIEKRQQLVEAFVVDTELRQTMQEDHLRSIPDL 404 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL-----FLKNDLPEELRGAVE-----KL 424 R R + +++A + D +R ++ L L++ + E+ +G +E KL Sbjct: 405 YRLAKRFQ------RNLANLEDVVRVYQVVIRLPGFINTLESVMDEQYQGPLEAEYTAKL 458 Query: 425 KKLPQSLEKTLSSMLSD--DLPTFKRDGGFLRDGADASLDETRSLRDQSKR---IIASLQ 479 + L S K L+ M+ DL ++ D SL R D+ K + + Sbjct: 459 RNLSDSFSK-LAEMVETTVDLDALDNHEFIIKPEFDGSLRIIRKKLDKLKHDMDVEHKIV 517 Query: 480 LKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLE 539 K + K L ++++ G+ +T + A ++ +K + T N FTT Sbjct: 518 GKNLNQDTDKKLFLENHRVHGWCFRLTRNEAGCIR----NKREYQECSTQKNGVYFTTST 573 Query: 540 LIDLENRIT------NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALA 593 + N T + L+ E+ + ++EQ S V+A +D+ ++ A Sbjct: 574 MQSFRREHDQLSSNYNRTQTGLVQEVVNVAASYCPLLEQLAS------VLAHLDVIVSFA 627 Query: 594 ILA--KEQNYCRPIID--NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNS 649 ++ Y RP I + N ++K+ RHP +E Q FI ND L +N Sbjct: 628 HVSVHAPTAYVRPKIHPRGTGNTVLKEARHPCME----MQDDISFITNDVFLL----RNE 679 Query: 650 GKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASG 709 ++TGPNMGGKST++RQ +I +MAQ G +VP S A + I D + +RVG++D+ G Sbjct: 680 SSFLIITGPNMGGKSTYIRQIGVIALMAQTGCFVPCSEAELTIFDSILARVGASDSQLKG 739 Query: 710 RSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLA 769 STFM EM+ETA+IL AT++S +I+DE+GRGT+T DG +AWA E++ RC L A Sbjct: 740 VSTFMAEMLETANILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIVTEIRCFALFA 799 Query: 770 THFHELTDLSK----SLKRFH------NATLQVSDSNEG-----IIFLHKVIPGIADHSY 814 THFHELT L + S+K H N T Q + + G + L++V PG+ D S+ Sbjct: 800 THFHELTALQEQYPNSVKNLHVVAFIGNGTEQKENDSTGKSKREVTLLYRVEPGVCDQSF 859 Query: 815 GIQVGKLAGLPNTVISRA 832 GI V +L P V++ A Sbjct: 860 GIHVAELVRFPEKVVNMA 877 >gi|256087125|ref|XP_002579727.1| hypothetical protein [Schistosoma mansoni] gi|238665205|emb|CAZ35966.1| expressed protein [Schistosoma mansoni] Length = 895 Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 181/564 (32%), Positives = 275/564 (48%), Gaps = 78/564 (13%) Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK-ILKS 370 S+ T++ T G RL A+ + PL D +KI RLD + F++ + + + L+ Sbjct: 267 HSVYGTLNNCRTAQGQRLLAQWLRQPLIDKSKIEERLDLVESFVEETGIRRGLHEDFLRR 326 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS 430 PD+ R RLK +G + ++D R +L L L + G+ K Sbjct: 327 IPDLQRLGRRLKKIKG-----SGLQDVYRIYQAVLRLPYAVSLLNQYTGS-----KQSTV 376 Query: 431 LEKTLSSMLSDDLP--------TFKRDGGFLRDGADASLDETRS--------LRDQSKRI 474 E S +L DL +R+ +R D L E R+ +RD+ +R Sbjct: 377 YESMDSFILFKDLVESNIDLDYVNQRNEFIVRADKDPLLQEIRNKLDNLEERIRDEFRRC 436 Query: 475 IASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLK--KDLESKD------RFIHR 526 L L+ + K++K++ N GYF+ VT L+ K E D RF ++ Sbjct: 437 AKILNLE-----QNKSIKLESNELHGYFMRVTLKDEKCLRGLKTFEILDTQKGGVRFRNK 491 Query: 527 QTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAII 586 Q M++LT T E+ N + ++ ++ E ++ ++ A + Sbjct: 492 Q-MTSLTE-TYAEVKQEYNGLQEVVVHQVVCAAATY----------LEPINQLNETTAFL 539 Query: 587 DISIALAILAKEQN---YCRPII--DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDL 641 D+ ++LAI A + Y RP I +++ I+K+ RHP +E Q I ND L Sbjct: 540 DVIVSLAIAAISSSGVSYIRPKILSEDNGRIILKEARHPCLE----MQDRVSVIPNDIHL 595 Query: 642 SCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVG 701 ++ ++TGPNMGGKST++ A+IV MAQ+GS+VP SYA I VD + +RVG Sbjct: 596 ----ERGKQIFLIITGPNMGGKSTYIHSVAVIVAMAQIGSFVPCSYAEIMPVDAIMARVG 651 Query: 702 SADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHET 761 +AD G STF+ EM+ET+S+L T S VI+DE+GRGT+T DG +AWA +L Sbjct: 652 AADYQCRGVSTFLAEMLETSSVLRSVTRNSLVIIDELGRGTSTYDGFGLAWAVASFLASP 711 Query: 762 N-RCRGLLATHFHELTDLSKSL-KRFHNATLQVSDSNE-----------GIIFLHKVIPG 808 C GL ATHFHELT L+ + KR N + + SN+ + L+KV G Sbjct: 712 EVGCFGLFATHFHELTSLAYYMPKRVANLRVLCNVSNDKEIVENKESETKVTMLYKVEAG 771 Query: 809 IADHSYGIQVGKLAGLPNTVISRA 832 + SYG+ V +LAGLP VI +A Sbjct: 772 VCSRSYGLDVARLAGLPIEVIKQA 795 >gi|308485160|ref|XP_003104779.1| CRE-MSH-2 protein [Caenorhabditis remanei] gi|308257477|gb|EFP01430.1| CRE-MSH-2 protein [Caenorhabditis remanei] Length = 856 Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 179/582 (30%), Positives = 282/582 (48%), Gaps = 64/582 (10%) Query: 292 IDSAARSNLEILRT----LSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTR 347 IDS A LE+ + L S +L ++ T G +L + ++ PL IN R Sbjct: 280 IDSCAVDALELFQLNYNYLEKSNNLTLYNVLNKCKTLPGEKLLRDWLSRPLCSIDHINER 339 Query: 348 LDSINFFIQNPILINPIQKI----LKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGIN 403 LD + + N N QK+ L PD + RL +R +N Sbjct: 340 LDVVESLLGNQ---NVRQKLRDSFLARMPDCSQLARRL------------MRKCTLQDLN 384 Query: 404 ILNLFLKNDLPEELRGAVEKL---KKLPQSLEKTLSS-------------MLSDDLPTF- 446 + L E + + +L K+ S+++ L S +L D+ F Sbjct: 385 --RFYQAATLLESVEMQLIQLSEDKRFSASIDRLLKSEVTAILKKVERFQVLCDEFFDFD 442 Query: 447 -KRDGGFLRDGAD--ASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFI 503 +++ +R D + E DQ +I L+ KY+ + + ++K+ N+ GY+ Sbjct: 443 YEKEHKEIRVRVDFVPEIQEISEKLDQVNKIAEKLRKKYSAKFECDSMKLDKNSQYGYYF 502 Query: 504 EVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFE 563 VT +K + KD I T + +FT EL D+ + E E Sbjct: 503 RVTLKE----EKSIRKKDVHILETTKGSGVKFTVGELSDINDEFLEFHLKYTRAEQEVIT 558 Query: 564 ILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN--YCRP--IIDNSTNFIVKDGRH 619 +L N E + +Q+IA +D+ ++LA + + Y RP + S +K RH Sbjct: 559 MLCNKAEEFIPLIPAMAQLIATLDVFVSLATFSSMSSGIYSRPELLPLGSKLLELKQCRH 618 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P++E S KPFI ND L +KN +L +LTG NMGGKST+LR AL +++AQ+ Sbjct: 619 PVIESI----SEKPFIPNDVIL----EKN--RLIILTGANMGGKSTYLRSAALSILLAQI 668 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 G +VP S A I +VD +F+RVG++D + G STFM EM++ ++IL +AT SFV++DE+G Sbjct: 669 GCFVPCSSAKISVVDGIFTRVGASDKQSQGISTFMAEMLDCSAILQRATENSFVVIDELG 728 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGT+T DG IA A + + RC + ATHFHE+ L++ + V I Sbjct: 729 RGTSTFDGFGIASAIAQDILNRIRCLSVFATHFHEMGKLAEQPGAVA-LQMGVQIEKNQI 787 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 L+KV G+A S+G++V K+ GL +VI++A ++L+ EK Sbjct: 788 HMLYKVSEGVAQCSFGLKVAKMVGLDESVINKASELLEGLEK 829 >gi|75062324|sp|Q5XXB5|MSH2_CERAE RecName: Full=DNA mismatch repair protein Msh2; AltName: Full=MutS protein homolog 2 gi|52632375|gb|AAU85549.1| mismatch repair protein [Chlorocebus aethiops] Length = 933 Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 189/655 (28%), Positives = 302/655 (46%), Gaps = 67/655 (10%) Query: 285 DIQSTLFIDSAARSNLEILRTLSGSRE-----QSLLKTIDYSITGAGGRLFAERIASPLT 339 D + +D AA + L GS E QSL ++ T G RL + I PL Sbjct: 295 DFSQYMKLDIAA---VRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLM 351 Query: 340 DSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 D +I RL+ + F+++ L +Q+ +L+ PD+ R + + +D + GI Sbjct: 352 DKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGI 411 Query: 399 RSGINILNLFLKNDLPEE----------LRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKR 448 N++ K++ + L K + +E TL D+ + Sbjct: 412 NQLPNVIQALEKHEGKHQKLLLAVFVTPLTDLRSDFSKFQEMIETTL------DMDQVEN 465 Query: 449 DGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEV 505 ++ D +L E R + + ++ + S + A + + K +K+ + GY+ V Sbjct: 466 HEFLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDPGKQIKLDSSTQFGYYFRV 525 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT-NAT-----NSALLIEL 559 T VL+ + F N +FT +L L T N T A++ E+ Sbjct: 526 TCKEEKVLRNN----KNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEI 581 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN--YCRPII--DNSTNFIVK 615 + +S+ +E ++L++ V+A +D ++ A ++ Y RP I I+K Sbjct: 582 VN---ISSGYVEPMQTLND---VLAQLDAVVSFAHVSNGAPVPYVRPAILEKGQGRIILK 635 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 RH VE Q FI ND +K+ ++TGPNMGGKST++RQ +IV+ Sbjct: 636 ASRHACVEV----QDEITFIPNDIYF----EKDKQMFHIITGPNMGGKSTYIRQTGVIVL 687 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+G +VP A + IVD + +RVG+ D+ G STFM EM+ETASIL AT S +I+ Sbjct: 688 MAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIII 747 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGT+T DG +AWA EY+ + ATHFHELT L+ + +N + + Sbjct: 748 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTT 807 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI---LKTFEKLYHHNQKDMRL 852 E + L++V G+ D S+GI V +LA P VI A L+ F+ + DM Sbjct: 808 EETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELEEFQYIGESQGYDM-- 865 Query: 853 YYPEIQTKESKNNLSKNDKL---FVEKIKCLNLDEMSPLTALKTLYAVKAWTLEK 904 E K+ + +K+ F+ K+K + EMS L +KA + K Sbjct: 866 ---EPAAKKCYLEREQGEKIIQEFLSKVKQMPFTEMSEENITIKLKQLKAEVIAK 917 >gi|194384482|dbj|BAG59401.1| unnamed protein product [Homo sapiens] Length = 682 Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 172/577 (29%), Positives = 273/577 (47%), Gaps = 56/577 (9%) Query: 285 DIQSTLFIDSAARSNLEILRTLSGSRE-----QSLLKTIDYSITGAGGRLFAERIASPLT 339 D + +D AA + L GS E QSL ++ T G RL + I PL Sbjct: 43 DFSQYMKLDIAA---VRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLM 99 Query: 340 DSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 D +I RL+ + F+++ L +Q+ +L+ PD+ R + + +D + GI Sbjct: 100 DKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGI 159 Query: 399 RSGINILNLFLKNDLPEE----------LRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKR 448 N++ K++ + L K + +E TL D+ + Sbjct: 160 NQLPNVIQALEKHEGKHQKLLLAVFVTPLTDLRSDFSKFQEMIETTL------DMDQVEN 213 Query: 449 DGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEV 505 ++ D +L E R + + ++ + S + A + + K +K+ + GY+ V Sbjct: 214 HEFLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRV 273 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT-NAT-----NSALLIEL 559 T VL+ + F N +FT +L L T N T A++ E+ Sbjct: 274 TCKEEKVLRNN----KNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEI 329 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN--YCRPII--DNSTNFIVK 615 + +S+ +E ++L++ V+A +D ++ A ++ Y RP I I+K Sbjct: 330 VN---ISSGYVEPMQTLND---VLAQLDAVVSFAHVSNGAPVPYVRPAILEKGQGRIILK 383 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 RH VE Q FI ND +K+ ++TGPNMGGKST++RQ +IV+ Sbjct: 384 ASRHACVEV----QDEIAFIPNDVYF----EKDKQMFHIITGPNMGGKSTYIRQTGVIVL 435 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+G +VP A + IVD + +RVG+ D+ G STFM EM+ETASIL AT S +I+ Sbjct: 436 MAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIII 495 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGT+T DG +AWA EY+ + ATHFHELT L+ + +N + + Sbjct: 496 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTT 555 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 E + L++V G+ D S+GI V +LA P VI A Sbjct: 556 EETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECA 592 >gi|294940586|ref|XP_002782821.1| DNA mismatch repair protein MSH6-1, putative [Perkinsus marinus ATCC 50983] gi|239894872|gb|EER14617.1| DNA mismatch repair protein MSH6-1, putative [Perkinsus marinus ATCC 50983] Length = 616 Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 171/592 (28%), Positives = 285/592 (48%), Gaps = 67/592 (11%) Query: 288 STLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTR 347 S L +D+ A LE+LR G E SLL +D+++T G RL + + PL T I+ R Sbjct: 23 SGLVLDANALEQLEVLRNTDGKLEGSLLNQLDHTVTPFGKRLLRQWVCCPLRAKTDIDRR 82 Query: 348 LDSINFFIQNPILINPIQKILKSSPDVPR----------SLSRLKIGRGEPKD------- 390 LD +++ ++ L+ ++ ++ PD+ R L R + GE + Sbjct: 83 LDVVDWLLEKTELVADLRSRMRKLPDIERRQNRVFALGLQLERKAVLYGEVESSRIAQFM 142 Query: 391 --IAVIRDG------IRSGINILNLFLKNDLPEE----LRGAVEKLKKLPQSLEKTLSSM 438 +A +++ +R G L L +P E + G +E+L Q E S Sbjct: 143 ELLAALKEADRCLAMVREGDGALPALLDELIPMEELGYVDGILEELGSRVQGSESDGYSA 202 Query: 439 LSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 P + D A + + +S + +I+ LK + + K + +K+ Sbjct: 203 APGCCPAY--------DEARSKIASIKSDLQEELKIVCHEHLKGCKLQEAKFVSVKYR-- 252 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 Y IEV A +DLE+ + T R T E+ ++ + +AT + Sbjct: 253 --YEIEVPERCAP---RDLEAHGLEV-SSTRKGFVRLLTQEIRNMTEEL-DATEERMKDC 305 Query: 559 LESFEI-LSNAIIEQSESLDNASQVIAIIDISIALAILAK--EQNYCRPIIDNSTNFIVK 615 L F L + + L + Q +A +D ++L+ ++ + CRP I + T F Sbjct: 306 LYPFMAQLFKDFHKHTIRLQDMVQRLATLDCLLSLSEASRPGAGSMCRPQILDPTEFTAP 365 Query: 616 -----DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQN 670 +GRHP++ T+ + F+ N ++ S L+TGPNMGGKST LR Sbjct: 366 VFDLVEGRHPVIIVTIME-----FVPNSVEMGI---NGSPTTLLVTGPNMGGKSTVLRLG 417 Query: 671 ALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQ 730 A VI+AQ+G VPAS + VD++F+R+G+ D++ +STF++E+ ET ++L AT Sbjct: 418 ATAVIIAQLGCRVPASSFKLTPVDRIFTRIGARDSILENKSTFLIELEETGAVLQHATKH 477 Query: 731 SFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR---FHN 787 S ++DE+GRGT+T DG +IA A +E + E+ CR L ATH+H+L + +SL +H Sbjct: 478 SLAVIDELGRGTSTFDGAAIAHAVLERISESIGCRTLFATHYHQLAE-DESLHNTALYHQ 536 Query: 788 ATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTF 839 A L V+ + + FL+K G S+ + V K+AGLP ++ A ++ F Sbjct: 537 ACL-VNPATREVTFLYKFTKGRCPQSHAMHVAKIAGLPEVIVEAAREMSTVF 587 >gi|150866793|ref|XP_001386506.2| hypothetical protein PICST_85730 [Scheffersomyces stipitis CBS 6054] gi|149388049|gb|ABN68477.2| predicted protein [Scheffersomyces stipitis CBS 6054] Length = 871 Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 117/288 (40%), Positives = 186/288 (64%), Gaps = 18/288 (6%) Query: 557 IELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKD 616 +E + + L +++++ + S+++ +D++ + AILA+E N P +++ +++ Sbjct: 582 LERQIVDSLRQKVLDKASDIRKVSKMVDFLDVTSSFAILAEENNLVCPKFVKTSSINIEN 641 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 GRH +VE LK K F ND ++ +S LW+++GPNMGGKSTFLRQNA+IVI+ Sbjct: 642 GRHFVVESGLKS-VGKMFTPNDTKIT-----SSANLWVVSGPNMGGKSTFLRQNAIIVIL 695 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+GS+VPAS A++GIVDK+F+R+G++D+L + STFMVEM+ET++IL AT+ S I+D Sbjct: 696 AQIGSFVPASKANLGIVDKIFTRIGASDDLFNDLSTFMVEMVETSNILRNATSHSLAIVD 755 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHF-HELTDLSKS-------LKRFHNA 788 EIGRGT+ +GL++A+AT+ L N+CR L ATHF EL L K+ ++ F Sbjct: 756 EIGRGTSGKEGLALAYATLYNLLSVNKCRTLFATHFGKELEQLLKANKVSQSKIRYFRTR 815 Query: 789 TLQVSD----SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 +Q D S G++ H + GI++ SY ++V ++AG P + A Sbjct: 816 VIQDDDDKNPSGLGLVIDHTLEKGISERSYALEVAQMAGFPPEALKNA 863 Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 116/423 (27%), Positives = 203/423 (47%), Gaps = 56/423 (13%) Query: 39 NPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKL 98 N + ++G FYEL+F+ A LG+ ++ R K IPM G P + +++ L Sbjct: 8 NQGCVCLIQVGSFYELYFEQASDYGPQLGLKVSTR-KTNNYTIPMAGFPTYQLQKFVKIL 66 Query: 99 IK-IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAV- 156 ++ +G +AI +Q + ++ +++++ R + R+V+PGTL ++ ++ +N+L+A+ Sbjct: 67 VQDLGENVAIIDQFPT-----RKISETIIHRKISRIVSPGTLVDETFMNYNQNNFLLAIS 121 Query: 157 ---------ARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELSHA 207 A T ++WID+S G F + + +ISDI R++P EII S+ Sbjct: 122 FPANCTKVPADPETAVGLSWIDVSVGEFYVQNTTLGNMISDISRVNPSEIIISK------ 175 Query: 208 EYKSLFETLGNV--AVAQPNVFF----DHSISESRIADYYNI-TTVDTFGSFSQVEKTAA 260 E++ + GN + + FF + ++S++ + TT SF+ E+ A Sbjct: 176 EFQDMNIIDGNWYPPLQELRRFFLRYHKTTYNDSKLKFKSGLQTTRKMLESFTVREEAAM 235 Query: 261 AAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEIL-RTLSG--SREQSLLKT 317 +SYI + P++ +P QS L +D+ R LE+ R+ SG S SLL T Sbjct: 236 NMILSYIDVNLPESNPSLDHPITYWNQSCLQMDARTREALELTERSTSGRSSVVGSLLTT 295 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 + +IT +G RL + I SP+ D +I R + F++N + ++ L D RS Sbjct: 296 VKRTITPSGSRLLTQWIKSPILDVNEIRRRQGFVQTFLENHQVTTSLRYQLSQLGDFIRS 355 Query: 378 LSRLKIGRGEP-KDIAVIRDGI-----------------RSGINILNLFLK-----NDLP 414 L RL G G+ + I D I + G+ IL+ FLK +D+ Sbjct: 356 LQRLAFGAGDSVTHLLAIADSIAKLQEIEVFLRTEHSNNKKGLKILDKFLKEFVVPSDIS 415 Query: 415 EEL 417 EE+ Sbjct: 416 EEI 418 >gi|258566327|ref|XP_002583908.1| DNA mismatch repair protein msh-2 [Uncinocarpus reesii 1704] gi|237907609|gb|EEP82010.1| DNA mismatch repair protein msh-2 [Uncinocarpus reesii 1704] Length = 1447 Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 225/856 (26%), Positives = 397/856 (46%), Gaps = 102/856 (11%) Query: 44 VFYRMGDFYELFFDDALLASRCLGIT---LTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 VF R GD+Y DA +R + T L G+ +P + V +++++ + Sbjct: 538 VFDR-GDWYTAHGSDAEYIARTVYKTTSVLRTLGRSDTSGLPSVTMTVTVFRNFLREAL- 595 Query: 101 IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL--TEDQLLSP---TDSNYLMA 155 R+++ +I S +G L ++ +PG L ED+L S D++ ++ Sbjct: 596 --FRLSMRLEIWSSQGGAGKGAWKLAKQ-----ASPGNLQDVEDELGSAGGMMDTSPIIL 648 Query: 156 VARIRTEWA------IAWIDISTGIFKISTSNHDRLISD----IMRIDPREIIFS----E 201 +I + + + + D S +S + + L S+ ++++ +E + + + Sbjct: 649 AVKISAKASETRHVGVCFADASVRELGVSEFDDNDLYSNFESLVIQLGVKECLVTADGQK 708 Query: 202 KELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVE-KTAA 260 K++ A+ +S+ ++ G ++P F + +A + G+ Q + K A Sbjct: 709 KDIELAKIRSIADSCGIAISSRPASDFATRDIDQDLARL--LKNEHATGTLPQTDLKLAM 766 Query: 261 AAAISYIKKTQMVNKPT-IGYPE--REDIQSTLFIDSAARSNLEIL-RTLSGSREQSLLK 316 +A + IK ++ P+ G + + D+ + +DSAA L ++ G++ SL Sbjct: 767 GSAAALIKYLGAMSDPSNFGQYQLYQHDLSQYMKLDSAALRALNLMPGPRDGAKSMSLYG 826 Query: 317 TIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDVP 375 +++ T GGRL A+ + PL + I R + F+ + L +Q+ L+S PD+ Sbjct: 827 LLNHCKTPVGGRLLAQWLKQPLMNHNDIEKRQQLVEAFVSDTDLRQTMQEDHLRSIPDLY 886 Query: 376 RSLSRLKIGRGEPKDIA-----VIRDGIRSGINILNLFLKNDLPEELRGA-VEKLKKLPQ 429 R + + +D+ VIR + IN L + E L K++ L Sbjct: 887 RLAKKFQRNVANLEDVVRIYQVVIR--LPGFINTLEAVMDEQYQEPLETEYTSKIRNLSN 944 Query: 430 SLEKTLSSMLSD--DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAE--- 484 S K L+ M+ DL ++ D SL R++R + R+ + ++ Sbjct: 945 SFGK-LAEMVETTVDLEALDHHEFIIKPEFDESL---RTIRKKLDRLRHDMDAEHKHVGH 1000 Query: 485 ---ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELI 541 + K L ++++ G+ +T + A ++ +K + T N FTT + Sbjct: 1001 DLNQDIEKKLFLENHRVHGWCFRLTRNEAGCIR----NKREYQECSTQKNGVYFTTSTMQ 1056 Query: 542 DLE------NRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAIL 595 L ++ N T + L+ E+ + ++EQ + V+A +D+ ++ A + Sbjct: 1057 SLRREHDQLSQNYNRTQTGLVNEVVNVAASYCPLLEQ------LAGVLAHLDVIVSFAHV 1110 Query: 596 A--KEQNYCRPIID--NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGK 651 + Y RP + + N I+K+ RHP +E Q FI ND L ++ Sbjct: 1111 SVHAPTPYVRPKVHPRGTGNTILKEARHPCME----MQDDISFITNDVSLI----RDESS 1162 Query: 652 LWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRS 711 ++TGPNMGGKST++RQ +I +MAQ G +VP + A + I D + +RVG++D+ G S Sbjct: 1163 FLIITGPNMGGKSTYIRQIGVIALMAQTGCFVPCTEAELTIFDCILARVGASDSQLKGVS 1222 Query: 712 TFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATH 771 TFM EM+ETA+IL AT++S +I+DE+GRGT+T DG +AWA E++ RC GL ATH Sbjct: 1223 TFMAEMLETANILKTATSESLIIIDELGRGTSTYDGFGLAWAISEHIVAEIRCFGLFATH 1282 Query: 772 FHELTDLS----KSLKRFHNATLQVSDSNEG-----------IIFLHKVIPGIADHSYGI 816 FHELT L KS K H S+E + L++V PG+ D S+GI Sbjct: 1283 FHELTALEERYPKSAKNLHVVAFIGDGSSETQNGTPSKKKREVTLLYRVEPGVCDQSFGI 1342 Query: 817 QVGKLAGLPNTVISRA 832 V +L P V++ A Sbjct: 1343 HVAELVRFPEKVVNMA 1358 >gi|19074680|ref|NP_586186.1| DNA MISMATCH REPAIR PROTEIN OF THE MUTS FAMILY [Encephalitozoon cuniculi GB-M1] gi|19069322|emb|CAD25790.1| DNA MISMATCH REPAIR PROTEIN OF THE MUTS FAMILY [Encephalitozoon cuniculi GB-M1] Length = 922 Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 224/869 (25%), Positives = 383/869 (44%), Gaps = 136/869 (15%) Query: 19 EENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG 78 E K TP +Q+ +IK D++VF++ G FYEL+ +DAL+ +R + +T R Sbjct: 130 EHEYKKFTPFEKQFWDIKKDFFDTIVFFKKGKFYELYENDALVGARLFDLKITDR----- 184 Query: 79 KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPL--------EAKKRG---NKSLVR 127 ++ M G P + +++ +K ++ G++IA EQ E+ + E K G ++R Sbjct: 185 VNMKMSGFPEGSLDYWSRKFLEHGYKIARVEQSENMIGKQIRERDEMSKEGRVVKDKIIR 244 Query: 128 RNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLIS 187 R + ++T GT+ + YLM+VA T+ + + + +G S +D I Sbjct: 245 RELKEIITQGTIYSIDYMRSAMPMYLMSVA---TD-EVCYSETCSGEVHTSVVLYDASIG 300 Query: 188 DIMRIDPREIIFSE--KELSHAEYKSLF------ETLGNVAVAQ-PNVFFDHSISES-RI 237 E+ FS + SH +++ E + + ++ P V D + S R Sbjct: 301 --------EVYFSSFCDDRSHHGIRTILSQHDVKEMIADFSIGGVPRVVPDKTACVSNRK 352 Query: 238 ADYYNITTVDTFGSFSQ-VEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAA 296 ++ N F + +EK A A+ +K +++ +D T+ ID A Sbjct: 353 YEFSNEREYVCFQYLMRYMEKLRRADALMNVKISRL-----------QDEARTMGIDDAT 401 Query: 297 RSNLEILRT-LSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFI 355 N+EI + +G+ E++L K +D+ T G RL + +PL I R + F Sbjct: 402 LRNMEIFKNNYNGTDEKTLFKAVDFCSTPFGQRLLRRWMMAPLVRKEDIVKRQEMALVF- 460 Query: 356 QNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIA-VIR--DGIRSGINILNLFLKND 412 + +++ L D R L RL G KD++ IR + ++L + L+ Sbjct: 461 -KRMDSTKLKEALGRIGDGERLLVRLYNGNPTAKDLSKFIRCLGACKETFDVLGMELRTR 519 Query: 413 LPEELRGAVEKLKKLPQSLEKTL----------------SSMLSDDLPTFKRDGGFLRDG 456 E R VEK + +E+ L D+L + G + Sbjct: 520 RLEGARDIVEKAEDYSCRIEEVLVWHRKVYDVTEAGISPGEENEDELCHLMSEKGKIEGD 579 Query: 457 ADASLDETRS--------LRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSS 508 DA L E ++ RD K + Q++ +E + + YFI SS Sbjct: 580 LDAYLQEQKTRLGCPSIRFRDVGKDV---FQMEVPKEIGVPS---------DYFI--MSS 625 Query: 509 SASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNA 568 V +R+ R + R+ ++ E RI + S L + ++L Sbjct: 626 VKGV--------NRYYSRDLRKLVERY-----MECEERIFQSKGSLLR---RAIDVLLPH 669 Query: 569 IIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQ 628 +I + +Q ID ++ A ++ P+ ST PI Sbjct: 670 VIFFRQVFCELAQ----IDCYLSFATFSQRNRTSTPVF--STKLCFSGMSSPIY------ 717 Query: 629 QSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYA 688 F+ ND D ++ +LTG NMGGKST LR VI++Q+G V Sbjct: 718 ---PAFVENDYD-------GCRRILVLTGANMGGKSTLLRTICFNVILSQVGMDVCCKRM 767 Query: 689 HIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGL 748 + D++F+R+G+ D+LA G STFM+E+ ET++IL +T S VI+DE+GRGT+T DG Sbjct: 768 ETPLFDRIFTRIGARDDLAKGESTFMIELGETSNILRHSTRDSLVIMDELGRGTSTKDGG 827 Query: 749 SIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPG 808 IA A +EYL + C L +TH+H + ++ N + I+FL+K++ G Sbjct: 828 CIARAVLEYL-KKKECHVLFSTHYHGIIG---EVEGVSNGYMSSVIKGRDIVFLYKLVAG 883 Query: 809 IADHSYGIQVGKLAGLPNTVISRAYDILK 837 ++ S+G+ V ++AG+P+ ++ RA I K Sbjct: 884 VSGDSHGLYVARMAGVPDAIVERAEGIRK 912 >gi|320588440|gb|EFX00909.1| DNA mismatch repair protein [Grosmannia clavigera kw1407] Length = 862 Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 182/631 (28%), Positives = 302/631 (47%), Gaps = 75/631 (11%) Query: 257 KTAAAAAISYIKKTQMVNKPT-IGYPE--REDIQSTLFIDSAARSNLEIL-RTLSGSREQ 312 K A +A + IK ++ P+ G + + D+ + +D+AA L ++ GS+ Sbjct: 181 KLALGSAAALIKYLGVLQDPSNFGQYQLYQHDLSQFMKLDAAAVKALNLMPGARDGSKTM 240 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK-ILKSS 371 SL +++ T GGRL ++ + PL + I R + F+ + L +Q+ L+S Sbjct: 241 SLFGLLNHCKTPLGGRLLSQWLKQPLMNKADIEQRQQLVEAFVNDTELRQTMQEDHLRSV 300 Query: 372 PDVPRSLSRLKIGRGEPKDIA-----VIRD----GIRSGI--NILNLFLKNDLPEELRGA 420 PD+ R R + + +D+ VIR G G+ + L +LR Sbjct: 301 PDLYRLAKRFQRNKANLEDVVRAYQVVIRLPGFLGTLEGVMDEAYRVPLDAAYTTKLRTL 360 Query: 421 VEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 + L KL + +E T+ DL ++ D SL R +R + R+ + Sbjct: 361 SDSLAKLQEMVETTV------DLDALDNHEFIIKPEFDDSL---RIIRRKLDRLRLDMDR 411 Query: 481 KYAE------ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTR 534 ++AE + + K + ++++ G+ + +T + A ++ ++ ++ T N Sbjct: 412 EFAEAARDLHQERDKKIFLENHKVHGWCMRLTRTEAGCIR----NQSQYQECSTQKNGVY 467 Query: 535 FTTLELIDLENRIT------NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDI 588 FTT L L N T S+L+ E+ + ++E+ + V+ +D+ Sbjct: 468 FTTKALQALRREFDQLSSNYNRTQSSLVSEVVGVAASYSPVLER------LAGVLGHLDV 521 Query: 589 SIALAILAKEQ--NYCRPIID--NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 ++LA + Y RP I ++++ RHP +E Q FI ND L Sbjct: 522 IVSLAHCSVHAPIAYVRPRIHARGEGRTVLREARHPCLE----MQDDVQFITNDVVL--- 574 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 D+ S ++TGPNMGGKST++RQ +I +MAQ+G +VP + A + + D + +RVG++D Sbjct: 575 -DRESSAFLIITGPNMGGKSTYIRQIGVIALMAQIGCFVPCAEAELTLFDSILARVGASD 633 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 + G STFM EM+ETA+IL AT +S +I+DE+GRGT+T DG +AWA E++ C Sbjct: 634 SQLKGVSTFMAEMLETANILKSATAESLIIIDELGRGTSTYDGFGLAWAISEHIVREIGC 693 Query: 765 RGLLATHFHELTDLSKSLKRFHN--ATLQVS-----------DSNEGIIFLHKVIPGIAD 811 L ATHFHELT L+ + N T +S D + L+KV PGI D Sbjct: 694 FALFATHFHELTALADRYPQVTNMHVTAHISGTGSSEDTAKKDEKREVTLLYKVEPGICD 753 Query: 812 HSYGIQVGKLAGLPNTVI---SRAYDILKTF 839 S+GI V +L P+ V+ R D L+ F Sbjct: 754 QSFGIHVAELVRFPDKVVRMAKRKADELEDF 784 >gi|150866717|ref|XP_001386399.2| hypothetical protein PICST_68406 [Scheffersomyces stipitis CBS 6054] gi|149387973|gb|ABN68370.2| predicted protein [Scheffersomyces stipitis CBS 6054] Length = 999 Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 187/625 (29%), Positives = 304/625 (48%), Gaps = 92/625 (14%) Query: 282 EREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSI---------TGAGGRLFAE 332 E+ ++ S + +DS+ L I + + +L+K+ + S T AG RL ++ Sbjct: 300 EQYNLSSYMKLDSSTMKALNIFPSSNSGVSNALVKSSNISSIFELLNKCRTAAGSRLLSQ 359 Query: 333 RIASPLTDSTKINTRLDSINFFIQNP-ILINPIQKILKSSPDVPRSLSRLKIGRGEP--- 388 + PLT + I RLD +N+ + + Q+ L PD+ R L ++ G + Sbjct: 360 WLKQPLTSLSMIEERLDLVNYLVDGTNFRVYANQEFLSQVPDIRRLLKKISNGLSKSTGN 419 Query: 389 -----KDIAVIRDGI--------RSGINILNLFLKNDLP----------EELRGAVEKLK 425 +DI V+ + S + I ++ K+ LP E + ++E L Sbjct: 420 ENKKLEDIVVLYQLVLALPAFIDMSKMVIADIEEKDSLPVANLIKKHWLEPVEKSLESLS 479 Query: 426 KLPQSLEKTLSSMLSDDLPTFKRDGGF--------LRDGADASLDETRSLRDQSKRIIAS 477 K + +E T+ DL + + +R D SL E S I Sbjct: 480 KFQEMIETTI------DLSPLESSSAYDQLHSDFNVRPEFDESLIEINDKLQASLAEIKQ 533 Query: 478 LQLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTR 534 L ++ A++ + K LK++ + G+ VT + ++VL+ + +++ QT+ Sbjct: 534 LHIEVADDLNMELDKKLKLEKHIQHGWCFRVTRNDSTVLRN---TGNKYSQLQTVKAGVF 590 Query: 535 FTTLELIDLENRITNA-----TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDIS 589 FTT L L A T LI+ EILS ++ QS + N S +A +D+ Sbjct: 591 FTTKRLTLLSQEYAEALQEYNTKQRELIK----EILSISLSYQSVFM-NLSLTLAHLDVL 645 Query: 590 IALAILA--KEQNYCRPIIDNSTNFI-----------VKDGRHPIVEKTLKQQSSKPFIA 636 ++ A +A + RP + +N I +++ RHP++E Q FIA Sbjct: 646 VSFANVAIVAPTVFARPKLHPLSNDIDSDQFKNRKIKLREARHPVLE----VQDDINFIA 701 Query: 637 NDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPAS---YAHIGIV 693 ND LS ++TGPNMGGKST++RQ +I +MAQ+GS++PA+ + + I Sbjct: 702 NDVFLSNDACDKGKPFVIITGPNMGGKSTYIRQIGVIALMAQIGSFIPANEDDFPELPIF 761 Query: 694 DKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWA 753 D + SRVG+ D+ G STFM+EM+ET+SIL AT S +I+DE+GRGT+T DG +AW+ Sbjct: 762 DAILSRVGAGDSQLKGLSTFMIEMLETSSILATATQNSLIIIDELGRGTSTYDGFGLAWS 821 Query: 754 TIEYLHETNRCRGLLATHFHELTDL-SKSLKRFHN----ATLQVSDSN-EGIIFLHKVIP 807 E+L + C L ATHFHELT L SK + N A ++ D N + I +++V P Sbjct: 822 ISEHLIKEKSCFTLFATHFHELTQLSSKYEDKVDNLHVVAHVENKDENDDDITLMYRVEP 881 Query: 808 GIADHSYGIQVGKLAGLPNTVISRA 832 G++D S+GI V +L P+ +I+ A Sbjct: 882 GVSDKSFGIHVAELVKFPSKIINMA 906 >gi|194389128|dbj|BAG61581.1| unnamed protein product [Homo sapiens] Length = 720 Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 164/545 (30%), Positives = 262/545 (48%), Gaps = 48/545 (8%) Query: 312 QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK-ILKS 370 QSL ++ T G RL + I PL D +I RL+ + F+++ L +Q+ +L+ Sbjct: 110 QSLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRR 169 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEE----------LRGA 420 PD+ R + + +D + GI N++ K++ + L Sbjct: 170 FPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIQALEKHEGKHQKLLLAVFVTPLTDL 229 Query: 421 VEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 K + +E TL D+ + ++ D +L E R + + ++ + S + Sbjct: 230 RSDFSKFQEMIETTL------DMDQVENHEFLVKPSFDPNLSELREIMNDLEKKMQSTLI 283 Query: 481 KYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTT 537 A + + K +K+ + GY+ VT VL+ + F N +FT Sbjct: 284 SAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNN----KNFSTVDIQKNGVKFTN 339 Query: 538 LELIDLENRIT-NAT-----NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIA 591 +L L T N T A++ E+ + +S+ +E ++L++ V+A +D ++ Sbjct: 340 SKLTSLNEEYTKNKTEYEEAQDAIVKEIVN---ISSGYVEPMQTLND---VLAQLDAVVS 393 Query: 592 LAILAKEQN--YCRPII--DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDK 647 A ++ Y RP I I+K RH VE Q FI ND +K Sbjct: 394 FAHVSNGAPVPYVRPAILEKGQGRIILKASRHACVEV----QDEIAFIPNDVYF----EK 445 Query: 648 NSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLA 707 + ++TGPNMGGKST++RQ +IV+MAQ+G +VP A + IVD + +RVG+ D+ Sbjct: 446 DKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQL 505 Query: 708 SGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGL 767 G STFM EM+ETASIL AT S +I+DE+GRGT+T DG +AWA EY+ + Sbjct: 506 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCM 565 Query: 768 LATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNT 827 ATHFHELT L+ + +N + + E + L++V G+ D S+GI V +LA P Sbjct: 566 FATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPKH 625 Query: 828 VISRA 832 VI A Sbjct: 626 VIECA 630 >gi|301119939|ref|XP_002907697.1| DNA mismatch repair protein Msh2, putative [Phytophthora infestans T30-4] gi|262106209|gb|EEY64261.1| DNA mismatch repair protein Msh2, putative [Phytophthora infestans T30-4] Length = 816 Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 212/717 (29%), Positives = 332/717 (46%), Gaps = 79/717 (11%) Query: 225 NVFFDHSISESRIADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIG-YPER 283 +F+D S E+ +A +T+ + + TA + A M + + G Y + Sbjct: 122 QLFYDVSGVETNVARLLGASTMAEYKDVLASKITAGSLACLIEALGVMTDAQSFGCYTLK 181 Query: 284 E-DIQSTLFIDSAARSNLEIL----RTLSG--SREQSLLKTIDYSITGAGGRLFAERIAS 336 E ++ S + +DSAA +L +L T +G S S+L+ ++ T G RL I Sbjct: 182 EGNLSSAMQLDSAAVWSLNLLPEPSSTTTGVVSFGGSVLEILNRGKTPMGRRLLERWIRQ 241 Query: 337 PLTDSTKINTRLDSINFFIQNPIL-INPIQKILKSSPDVPR---SLSRLKIGRGEPKDIA 392 PL D +I TR + F+ + L + + + +K+ PD+ R SL R K + D+ Sbjct: 242 PLLDVKQIETRQSLVQLFVDDSSLRMELLDECMKALPDLGRLAISLERKK--HAKITDLV 299 Query: 393 VIRDGIRSGINILNLFLK-------NDLPEELRGAVEKLKKLPQSLEKTLSSMLS----- 440 + D + + LK NDL ++ +K LEK L+ + Sbjct: 300 SVYDAAVGAMPRVLKLLKATEAGGDNDLATLVK------EKFATPLEKVLADLEGYTDLV 353 Query: 441 ------DDLPTFKRDGGFLRDGADASLDET-RSLRDQSKRIIASLQLKY--AEETKIKNL 491 D PT +A DE ++LRD+ I+A ++ ++ A +T ++ Sbjct: 354 KEVVDLDSRPTLV---------VNAKHDENLQALRDEWDGILADIEEEHRNALDTIGGDI 404 Query: 492 KIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIH-RQTMSNLTRFTTLELIDLENRITNA 550 K + + G+ V + ++ SK ++H Q + + +FTT +L L Sbjct: 405 KCEKDKVRGFAFRVVNKK----EEARLSKLSYVHICQVLVSGVQFTTTKLKALATDYHRV 460 Query: 551 TNSALLIELESFEILSNAIIEQSE---SLDNASQVIAIIDISIALAILAKE--QNYCRPI 605 E +LS AI S L+ A+ +A +D+ + A A YCRP Sbjct: 461 RGE---YEERQSHLLSAAIDVASTYVPVLEAATATLAELDVLLGFAHAACHAGSGYCRPT 517 Query: 606 IDNSTNFIV-KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 ++ IV RHP VE Q FI ND + + + L+TGPNMGGKS Sbjct: 518 LEQDGECIVLTSARHPCVE----LQDGVDFIPNDYNFV----RERSRFQLVTGPNMGGKS 569 Query: 665 TFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 T++RQ I +MAQ+GS+VPA A + + DKL RVG+ D G STFM+EM+E ++IL Sbjct: 570 TYIRQLGTIAVMAQIGSFVPAEVARLPVFDKLLVRVGAGDLQQRGVSTFMLEMLEASAIL 629 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLS-KSLK 783 ++AT +S VI+DE+GRGT+T DG +AWA EYL R L ATHFHELT L + Sbjct: 630 HKATERSLVIIDELGRGTSTYDGFGLAWAISEYLLTKARSMCLFATHFHELTALKLEHPH 689 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAY---DILKTFE 840 F N + S+ I +++V G S+G+ V +AG P +VI A L+ FE Sbjct: 690 GFANKHVTAVASDREITMVYQVRDGPCMQSFGVHVASMAGFPKSVIECARLKSQELEGFE 749 Query: 841 KLYHHNQKD--MRLYYPEIQT-KESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTL 894 + + R + T ES + + ++K F+ L LD+M P A + Sbjct: 750 RAVGSQETTGAKRSAADALLTDSESPSKVFVSEKGFLTAFAALPLDKMEPAEAFAAV 806 >gi|68481114|ref|XP_715472.1| hypothetical protein CaO19.10605 [Candida albicans SC5314] gi|68481255|ref|XP_715402.1| hypothetical protein CaO19.3093 [Candida albicans SC5314] gi|46437024|gb|EAK96377.1| hypothetical protein CaO19.3093 [Candida albicans SC5314] gi|46437096|gb|EAK96448.1| hypothetical protein CaO19.10605 [Candida albicans SC5314] Length = 873 Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 169/528 (32%), Positives = 277/528 (52%), Gaps = 42/528 (7%) Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G RL ++ + PL D + I R + + I + L IQ+ L PD+ R L ++ Sbjct: 307 TLGGSRLLSQWLKQPLIDLSLIEERQELVKAMIDDTSLRVEIQEFLSKVPDINRLLKKIG 366 Query: 383 IGRGEPKDIAVIRDGIRSG-IN-ILNLF-LKNDLPE-----ELRGAVEKLKKLPQSLEKT 434 +G V R G + +N ++NL+ L + LP + + LKK Q+L K Sbjct: 367 LG--------VKRSGAENKKLNEVVNLYQLVSLLPNLTEILTIDYYAKPLKKDEQALSKF 418 Query: 435 LSSMLSD-DLPT-FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE----TKI 488 + + DL T F +D ++ D SL E + + + + I L L+ ++ T Sbjct: 419 CELVETTIDLDTSFDKDYK-IKPDFDPSLSEISNNMESAFKAINDLYLEAGDDLNLDTAS 477 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 LK++ + G+ + VT + + VL+ K ++ QT+ + FTT+E+ L T Sbjct: 478 NKLKLEQHQTHGWCMRVTRNDSRVLR----GKSQYKELQTVKSGVFFTTIEMKRLSQEYT 533 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII-- 606 A + + + E + + + + L + S +A +D+ A A +Y +P + Sbjct: 534 KAYDEYNVKQSEVIKEILSLTLTYEPVLQSLSSTLAHLDVITCFATTAMLNSYTQPKLFP 593 Query: 607 -DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKST 665 ++S + + RHP++E Q FI+ND + +DK+ ++TGPNMGGKST Sbjct: 594 FESSRKINLIESRHPLLE----VQDDINFISNDVKM---DDKH---FAIITGPNMGGKST 643 Query: 666 FLRQNALIVIMAQMGSYVPAS-YAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 ++RQ I +MAQ+GS++PA+ A + I D + SRVG+ D+ G STFM+EM+ET+SIL Sbjct: 644 YIRQIGTIALMAQVGSFIPANDGAELPIFDAILSRVGAGDSQLKGLSTFMIEMLETSSIL 703 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR 784 AT S +I+DE+GRGT+T DG +AWA E L + +C + ATHFHEL+ LS+ Sbjct: 704 ATATANSLIIIDELGRGTSTYDGFGLAWAISEELIK-RKCFAVFATHFHELSQLSEKYDG 762 Query: 785 FHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 N L +NE I ++KV PGI++ S+GI V + +P +++ A Sbjct: 763 VENLNLMAEQTNEDITLIYKVGPGISNTSFGISVAEKLHMPEKIVNMA 810 >gi|238881184|gb|EEQ44822.1| conserved hypothetical protein [Candida albicans WO-1] Length = 873 Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 169/528 (32%), Positives = 277/528 (52%), Gaps = 42/528 (7%) Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T G RL ++ + PL D + I R + + I + L IQ+ L PD+ R L ++ Sbjct: 307 TLGGSRLLSQWLKQPLIDLSLIEERQELVKAMIDDTSLRVEIQEFLSKVPDINRLLKKIG 366 Query: 383 IGRGEPKDIAVIRDGIRSG-IN-ILNLF-LKNDLPE-----ELRGAVEKLKKLPQSLEKT 434 +G V R G + +N ++NL+ L + LP + + LKK Q+L K Sbjct: 367 LG--------VKRSGAENKKLNEVVNLYQLVSLLPNLTEILTIDYYAKPLKKDEQALSKF 418 Query: 435 LSSMLSD-DLPT-FKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEE----TKI 488 + + DL T F +D ++ D SL E + + + + I L L+ ++ T Sbjct: 419 CELVETTIDLDTSFDKDYK-IKPDFDPSLSEISNNMESAFKAINDLYLEAGDDLNLDTAS 477 Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 LK++ + G+ + VT + + VL+ K ++ QT+ + FTT+E+ L T Sbjct: 478 NKLKLEQHQTHGWCMRVTRNDSRVLR----GKSQYKELQTVKSGVFFTTIEMKRLSQEYT 533 Query: 549 NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII-- 606 A + + + E + + + + L + S +A +D+ A A +Y +P + Sbjct: 534 KAYDEYNVKQSEVIKEILSLTLTYEPVLQSLSSTLAHLDVITCFATTAMLNSYTQPKLFP 593 Query: 607 -DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKST 665 ++S + + RHP++E Q FI+ND + +DK+ ++TGPNMGGKST Sbjct: 594 FESSRKINLIESRHPLLE----VQDDINFISNDVKM---DDKH---FAIITGPNMGGKST 643 Query: 666 FLRQNALIVIMAQMGSYVPAS-YAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASIL 724 ++RQ I +MAQ+GS++PA+ A + I D + SRVG+ D+ G STFM+EM+ET+SIL Sbjct: 644 YIRQIGTIALMAQVGSFIPANDGAELPIFDAILSRVGAGDSQLKGLSTFMIEMLETSSIL 703 Query: 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKR 784 AT S +I+DE+GRGT+T DG +AWA E L + +C + ATHFHEL+ LS+ Sbjct: 704 ATATANSLIIIDELGRGTSTYDGFGLAWAISEELIK-RKCFAVFATHFHELSQLSEKYDG 762 Query: 785 FHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 N L +NE I ++KV PGI++ S+GI V + +P +++ A Sbjct: 763 VENLNLMAEQTNEDITLIYKVGPGISNTSFGISVAEKLHMPEKIVNMA 810 >gi|50310365|ref|XP_455202.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49644338|emb|CAG97910.1| KLLA0F02706p [Kluyveromyces lactis] Length = 956 Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 174/578 (30%), Positives = 287/578 (49%), Gaps = 65/578 (11%) Query: 294 SAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINF 353 + ++ N +L S + SL + ++ T +G RL E + PLTD +I R D + F Sbjct: 312 TGSQGNTALLSVGSPQKCSSLFQLLNRCKTNSGVRLLNEWLKQPLTDIDQITKRHDLVEF 371 Query: 354 FIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDI----------AVIRDGIRSGI 402 F+ L + +Q+ L S PD+ R +L+ G +D+ VI D ++ Sbjct: 372 FMDQLELRSSLQEECLPSVPDIRRLTKKLQ-KNGNLEDVLKIYQFAQMVPVISDLLKQKT 430 Query: 403 -----NILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFL-RDG 456 N L + +K L + + L+KL + +E T+ DL ++ F+ + Sbjct: 431 EEVDSNDLMILVKEVLLDPMLENANPLEKLKELVETTV------DLEAYEETNEFMIKVE 484 Query: 457 ADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVL 513 + L R+ D+ K I ++ L A++ K LK+++++ G+ + +T + A L Sbjct: 485 FNEQLSIIRTHLDELKDAIRTIHLDTADDLGFDPEKKLKLENHHLHGWCMRLTRNDAKAL 544 Query: 514 KKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN------ATNSALLIELESFEILSN 567 ++ ++I T+ F+T EL ++ + ++L+ E+ S + Sbjct: 545 RQ----HKKYIELSTVKAGIFFSTKELKNIAEETSELQKKYEQQQASLVKEIVSITLSYT 600 Query: 568 AIIEQSESLDNASQVIAIIDISIALAILAKEQN--YCRPII-----DNSTNFIVKDGRHP 620 ++E+ S V A +DI + A ++ Y RP + N T ++ RHP Sbjct: 601 PVLEK------LSVVTAQLDILCSFAQVSSYAPIPYVRPKMYPLNDQNRTTELIA-SRHP 653 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 IVE Q FI+ND L + + ++TGPNMGGKST++RQ +I +MAQ+G Sbjct: 654 IVE----MQDDVTFISNDVKLV----QGDSEFIVITGPNMGGKSTYIRQIGVICLMAQIG 705 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 +VP A I VD + RVG+ D+ G STFM+EM+ETASIL AT+ S VI+DE+GR Sbjct: 706 CFVPCDEAKIAAVDAILCRVGAGDSQLKGVSTFMMEMLETASILKNATHNSLVIVDELGR 765 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV------SD 794 GT+T DG +AW+ E++ C L ATHFHELT L+ L N + S Sbjct: 766 GTSTYDGFGLAWSISEHIATNINCFTLFATHFHELTTLADKLDNVSNMHVVAHIEDNGSH 825 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 +++ I L+KV G +D S+GI V ++ P+ +++ A Sbjct: 826 NSDDITLLYKVEAGSSDQSFGIHVAEVVQFPSKIVNMA 863 >gi|30047836|gb|AAH50897.1| MutS homolog 2 (E. coli) [Mus musculus] Length = 935 Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 176/584 (30%), Positives = 275/584 (47%), Gaps = 70/584 (11%) Query: 285 DIQSTLFIDSAARSNLEILRTLSGSRE-----QSLLKTIDYSITGAGGRLFAERIASPLT 339 D + +D AA + L GS E QSL ++ T G RL + I PL Sbjct: 295 DFSQYMKLDMAA---VRALNLFQGSVEDTTGSQSLAALLNKCKTAQGQRLVNQWIKQPLM 351 Query: 340 DSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 D +I RL+ + F+++ L +Q+ +L+ PD+ R + + +D + GI Sbjct: 352 DRNRIEERLNLVEAFVEDSELRQSLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGI 411 Query: 399 RSGINILNLFLKNDLPEELRGAVEKLKKLPQSL-----EKTLSSMLSD------------ 441 N LP ++ A+EK + Q+L L + SD Sbjct: 412 ------------NQLPSVIQ-ALEKYEGRHQALLLAVFVTPLIDLRSDFSKFQEMIETTL 458 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNN 498 D+ + ++ D +L E R + D ++ + S + A + K +K+ + Sbjct: 459 DMDQVENHEFLVKPSFDPNLSELREVMDGLEKKMQSTLINAARGLGLDPGKQIKLDSSAQ 518 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN------ATN 552 GY+ VT VL+ + F N +FT EL L T Sbjct: 519 FGYYFRVTCKEEKVLRNN----KNFSTVDIQKNGVKFTNSELSSLNEEYTKNKGEYEEAQ 574 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAIL--AKEQNYCRPII--DN 608 A++ E+ + +S+ +E ++L++ V+A +D ++ A + A Y RP+I Sbjct: 575 DAIVKEIVN---ISSGYVEPMQTLND---VLAHLDAIVSFAHVSNAAPVPYVRPVILEKG 628 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 I+K RH VE Q FI ND +K+ ++TGPNMGGKST++R Sbjct: 629 KGRIILKASRHACVEV----QDEVAFIPNDVHF----EKDKQMFHIITGPNMGGKSTYIR 680 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q +IV+MAQ+G +VP A + IVD + +RVG+ D+ G STFM EM+ETASIL AT Sbjct: 681 QTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSAT 740 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA 788 S +I+DE+GRGT+T DG +AWA +Y+ + ATHFHELT L+ + +N Sbjct: 741 KDSLIIIDELGRGTSTYDGFGLAWAISDYIATKIGAFCMFATHFHELTALANQIPTVNNL 800 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 + + E + L++V G+ D S+GI V +LA P VI+ A Sbjct: 801 HVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPRHVIACA 844 >gi|260835244|ref|XP_002612619.1| hypothetical protein BRAFLDRAFT_280395 [Branchiostoma floridae] gi|229297997|gb|EEN68628.1| hypothetical protein BRAFLDRAFT_280395 [Branchiostoma floridae] Length = 905 Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 184/620 (29%), Positives = 291/620 (46%), Gaps = 68/620 (10%) Query: 250 GSFSQVEKTAAAAAIS-YIKKTQMVNKPTIGYPERE----DIQSTLFIDSAARSNLEILR 304 + S++EKTAA A++S IK +++ T + + + D+ + +D+AA L +L Sbjct: 228 AALSEIEKTAAMASVSALIKYLELLGDET-NFGQFKLVTFDLNQYMRLDAAAVRALNLLP 286 Query: 305 TL--SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILIN 362 T G+R QS+ + + T G RL + + PL D +I RL+ + +++ L Sbjct: 287 TSLDGGNRFQSVAGLLTHCRTSQGHRLLTQWVKQPLMDKNRIEERLNVVEALVEDAELRQ 346 Query: 363 PIQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIR--------------SGINILNL 407 +Q+ L+ PD R + + R +D + + S ++L Sbjct: 347 TLQEEQLRKVPDFHRLAKKFQRKRANLQDCYRVYQALNIIPHLTEALEKHAGSHRSLLME 406 Query: 408 FLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSL 467 N + E L +K + +E T+ D+ + ++ D +L E R Sbjct: 407 LFSNPIKELLY----DFRKFQEMVETTM------DMDRVDKHEFVIKPDFDDNLKELREK 456 Query: 468 RDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 ++ I S + A E K+ K LK++ + LGY VT +K L ++ Sbjct: 457 MNKLDEDIKSHLNEAARELKLEPNKVLKLETSTQLGYHFRVTLKE----EKALRGNKKYR 512 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQ--------SESL 576 +T N +FT +L N L E++ A++++ E + Sbjct: 513 TLETSKNGVKFTDSDL--------QRMNEEYLKSKEAYADTQKAVVDEILGIAAGYVEPM 564 Query: 577 DNASQVIAIID--ISIALAILAKEQNYCRPIIDNSTNFIVK--DGRHPIVEKTLKQQSSK 632 + S VIA +D +S A A Y RP + +K + RHP +E Q Sbjct: 565 GSLSDVIAQLDALVSFACASANAPIPYVRPKLTEKGEGGIKLVNARHPCLE----LQDDV 620 Query: 633 PFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGI 692 FI ND D++ ++TGPNMGGKST++RQ + V+MAQ+G +VP A + I Sbjct: 621 QFIPNDASF----DRDEQMFLIVTGPNMGGKSTYIRQIGVNVLMAQIGCFVPCDSAEVCI 676 Query: 693 VDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAW 752 VD + +RVG+ D+ G STFM EM+ETASIL AT S +I+DE+GRGT+T DG +AW Sbjct: 677 VDCILARVGAGDSQLKGVSTFMSEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAW 736 Query: 753 ATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADH 812 A E++ L ATHFHELT L+ + N + + + L+KV PG+ D Sbjct: 737 AISEHIATKIGAFCLFATHFHELTALADVVPTATNLHVTALTTGGTLTLLYKVKPGVCDQ 796 Query: 813 SYGIQVGKLAGLPNTVISRA 832 S+GI V +LA P VI A Sbjct: 797 SFGIHVAELAHFPEKVIEFA 816 >gi|6678938|ref|NP_032654.1| DNA mismatch repair protein Msh2 [Mus musculus] gi|1171033|sp|P43247|MSH2_MOUSE RecName: Full=DNA mismatch repair protein Msh2; AltName: Full=MutS protein homolog 2 gi|534945|emb|CAA57049.1| MSH2 [Mus musculus] gi|28436763|gb|AAH47117.1| MutS homolog 2 (E. coli) [Mus musculus] gi|74186106|dbj|BAE34223.1| unnamed protein product [Mus musculus] gi|148706688|gb|EDL38635.1| mutS homolog 2 (E. coli) [Mus musculus] Length = 935 Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 176/584 (30%), Positives = 275/584 (47%), Gaps = 70/584 (11%) Query: 285 DIQSTLFIDSAARSNLEILRTLSGSRE-----QSLLKTIDYSITGAGGRLFAERIASPLT 339 D + +D AA + L GS E QSL ++ T G RL + I PL Sbjct: 295 DFSQYMKLDMAA---VRALNLFQGSVEDTTGSQSLAALLNKCKTAQGQRLVNQWIKQPLM 351 Query: 340 DSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 D +I RL+ + F+++ L +Q+ +L+ PD+ R + + +D + GI Sbjct: 352 DRNRIEERLNLVEAFVEDSELRQSLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGI 411 Query: 399 RSGINILNLFLKNDLPEELRGAVEKLKKLPQSL-----EKTLSSMLSD------------ 441 N LP ++ A+EK + Q+L L + SD Sbjct: 412 ------------NQLPSVIQ-ALEKYEGRHQALLLAVFVTPLIDLRSDFSKFQEMIETTL 458 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNN 498 D+ + ++ D +L E R + D ++ + S + A + K +K+ + Sbjct: 459 DMDQVENHEFLVKPSFDPNLSELREVMDGLEKKMQSTLINAARGLGLDPGKQIKLDSSAQ 518 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN------ATN 552 GY+ VT VL+ + F N +FT EL L T Sbjct: 519 FGYYFRVTCKEEKVLRNN----KNFSTVDIQKNGVKFTNSELSSLNEEYTKNKGEYEEAQ 574 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAIL--AKEQNYCRPII--DN 608 A++ E+ + +S+ +E ++L++ V+A +D ++ A + A Y RP+I Sbjct: 575 DAIVKEIVN---ISSGYVEPMQTLND---VLAHLDAIVSFAHVSNAAPVPYVRPVILEKG 628 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 I+K RH VE Q FI ND +K+ ++TGPNMGGKST++R Sbjct: 629 KGRIILKASRHACVEV----QDEVAFIPNDVHF----EKDKQMFHIITGPNMGGKSTYIR 680 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q +IV+MAQ+G +VP A + IVD + +RVG+ D+ G STFM EM+ETASIL AT Sbjct: 681 QTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSAT 740 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA 788 S +I+DE+GRGT+T DG +AWA +Y+ + ATHFHELT L+ + +N Sbjct: 741 KDSLIIIDELGRGTSTYDGFGLAWAISDYIATKIGAFCMFATHFHELTALANQIPTVNNL 800 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 + + E + L++V G+ D S+GI V +LA P VI+ A Sbjct: 801 HVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPRHVIACA 844 >gi|194387494|dbj|BAG60111.1| unnamed protein product [Homo sapiens] Length = 865 Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 172/577 (29%), Positives = 272/577 (47%), Gaps = 56/577 (9%) Query: 285 DIQSTLFIDSAARSNLEILRTLSGSRE-----QSLLKTIDYSITGAGGRLFAERIASPLT 339 D + +D AA + L GS E QSL ++ T G RL + I PL Sbjct: 226 DFSQYMKLDIAA---VRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLM 282 Query: 340 DSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 D +I RL+ + F+++ L +Q+ +L+ PD+ R + + +D + GI Sbjct: 283 DKNRIEERLNLVEAFVEDAELSQTLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGI 342 Query: 399 RSGINILNLFLKND----------LPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKR 448 N++ K++ L K + +E TL D+ + Sbjct: 343 NQLPNVIQALEKHEGKHQKLLLAVFATPLTDLRSDFSKFQEMIETTL------DMDQVEN 396 Query: 449 DGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEV 505 ++ D +L E R + + ++ + S + A + + K +K+ + GY+ V Sbjct: 397 HEFLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRV 456 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT-NAT-----NSALLIEL 559 T VL+ + F N +FT +L L T N T A++ E+ Sbjct: 457 TCKEEKVLRNN----KNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEI 512 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN--YCRPII--DNSTNFIVK 615 + +S+ +E ++L++ V+A +D ++ A ++ Y RP I I+K Sbjct: 513 VN---ISSGYVEPMQTLND---VLAQLDAVVSFAHVSNGAPVPYVRPAILEKGQGRIILK 566 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 RH VE Q FI ND +K+ ++TGPNMGGKST++RQ +IV+ Sbjct: 567 ASRHACVEV----QDEIAFIPNDVYF----EKDKQMFHIITGPNMGGKSTYIRQTGVIVL 618 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+G +VP A + IVD + +RVG+ D+ G STFM EM+ETASIL AT S +I+ Sbjct: 619 MAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIII 678 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGT+T DG +AWA EY+ + ATHFHELT L+ + +N + + Sbjct: 679 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTT 738 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 E + L++V G+ D S+GI V +LA P VI A Sbjct: 739 EETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECA 775 >gi|302657750|ref|XP_003020589.1| hypothetical protein TRV_05311 [Trichophyton verrucosum HKI 0517] gi|291184439|gb|EFE39971.1| hypothetical protein TRV_05311 [Trichophyton verrucosum HKI 0517] Length = 942 Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 180/619 (29%), Positives = 298/619 (48%), Gaps = 76/619 (12%) Query: 259 AAAAAISYIKKTQMVNKPTIGYPE--REDIQSTLFIDSAARSNLEILRTLSGSRE----Q 312 +A+A ISY+ M + G + + D+ + +D++A L L + G R+ Sbjct: 263 SASALISYL--NAMSDPSNFGQYQLYKHDLAQYMKLDASA---LRALNLMPGPRDSMKNM 317 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI-LKSS 371 SL +++ T GGRL A+ + PL + I R + F+ + L +Q+ L+S Sbjct: 318 SLYGLLNHCKTPVGGRLLAQWLKQPLMNHKDIEKRQQLVEAFVTDTELRQTMQEHHLRSI 377 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF-----------LKNDLPEELRGA 420 PD+ R R + G+ +D+ + + +N F L + ++LR Sbjct: 378 PDLYRLAKRFQRGKANLEDVVRVYQVVIRIPGFINSFEGVMDEQYQTPLDAEYTDKLRKL 437 Query: 421 VEKLKKLPQSLEKTLSSMLSDD-----LPTFKRDGGFLRDGADASLDETRSLRDQSKRII 475 + L KL + +E T+ D+ P F +R LD+ R D R + Sbjct: 438 SQDLGKLAEMVETTVDLEALDNHEFIIKPEFDDSLRIIRK----KLDKLRHDMDSEHRRV 493 Query: 476 ASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRF 535 ++T+ K L ++++ G+ +T + A ++ +K + T N F Sbjct: 494 GR---DLGQDTE-KKLFLENHRVHGWCFRLTRNEAGCIR----NKREYQECSTQKNGVYF 545 Query: 536 TTLELIDLENRIT------NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDIS 589 TT + L N T + L+ E+ + ++EQ + ++A +D+ Sbjct: 546 TTSTMQALRREHDQLSMNYNRTQTGLVSEVVNVAASYCPLLEQ------LAGILAHLDVI 599 Query: 590 IALAILAKEQ--NYCRPIID--NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPN 645 ++ A ++ Y RP I + N I+K+ RHP +E Q FI ND L Sbjct: 600 VSFAHVSAHAPTAYVRPKIHPRGTGNTILKEARHPCME----MQDDITFITNDVSLI--- 652 Query: 646 DKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADN 705 ++ ++TGPNMGGKST++RQ +I +MAQ G +VP S A + I D + +RVG++D+ Sbjct: 653 -RDESSFLIITGPNMGGKSTYIRQIGVIALMAQTGCFVPCSEAELTIFDSILARVGASDS 711 Query: 706 LASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCR 765 G STFM EM+ETA+IL AT++S +I+DE+GRGT+T DG +AWA E++ +C Sbjct: 712 QLKGVSTFMAEMLETANILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIVTEIKCF 771 Query: 766 GLLATHFHELTDLS----KSLKRFH-NATLQVSDSNEG-------IIFLHKVIPGIADHS 813 L ATHFHELT L K++ H A + + EG + L++V PG+ D S Sbjct: 772 SLFATHFHELTALEERYPKAVSNLHVVAFIGDGPAAEGKQKKKQEVTLLYRVEPGVCDQS 831 Query: 814 YGIQVGKLAGLPNTVISRA 832 +GI V +L P+ V++ A Sbjct: 832 FGIHVAELVRFPDKVVNMA 850 >gi|332226457|ref|XP_003262406.1| PREDICTED: DNA mismatch repair protein Msh2 isoform 2 [Nomascus leucogenys] Length = 865 Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 173/577 (29%), Positives = 276/577 (47%), Gaps = 56/577 (9%) Query: 285 DIQSTLFIDSAARSNLEILRTLSGSRE-----QSLLKTIDYSITGAGGRLFAERIASPLT 339 D + +D AA + L GS E QSL ++ T G RL + I PL Sbjct: 226 DFSQYMKLDIAA---VRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLM 282 Query: 340 DSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 D +I RL+ + F+++ L +Q+ +L+ PD+ R + + +D + GI Sbjct: 283 DKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGI 342 Query: 399 RSGINILNLFLKNDLP-EELRGAV---------EKLKKLPQSLEKTLSSMLSDDLPTFKR 448 N++ K++ ++L AV K + +E TL D+ + Sbjct: 343 NQLPNVIQALEKHEGKHQKLLSAVFVTPLTDLRSDFSKFQEMIETTL------DMDQVEN 396 Query: 449 DGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEV 505 ++ D +L E R + + ++ + S + A + + K +K+ + GY+ V Sbjct: 397 HEFLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRV 456 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT-NAT-----NSALLIEL 559 T VL+ + F N +FT +L L T N T A++ E+ Sbjct: 457 TCKEEKVLRNN----KNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEI 512 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN--YCRPII--DNSTNFIVK 615 + +S+ +E ++L++ V+A +D ++ A ++ Y RP I ++K Sbjct: 513 VN---ISSGYVEPMQTLND---VLAQLDAVVSFAHVSNGAPVPYVRPAILEKGQGRIMLK 566 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 RH VE Q FI ND +K+ ++TGPNMGGKST++RQ +IV+ Sbjct: 567 ASRHACVEV----QDEIAFIPNDVYF----EKDKQMFHIITGPNMGGKSTYIRQTGVIVL 618 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+G +VP A + IVD + +RVG+ D+ G STFM EM+ETASIL AT S +I+ Sbjct: 619 MAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIII 678 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGT+T DG +AWA EY+ + ATHFHELT L+ + +N + + Sbjct: 679 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTT 738 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 E + L++V G+ D S+GI V +LA P VI A Sbjct: 739 EETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECA 775 >gi|302501199|ref|XP_003012592.1| hypothetical protein ARB_01205 [Arthroderma benhamiae CBS 112371] gi|291176151|gb|EFE31952.1| hypothetical protein ARB_01205 [Arthroderma benhamiae CBS 112371] Length = 942 Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 180/619 (29%), Positives = 298/619 (48%), Gaps = 76/619 (12%) Query: 259 AAAAAISYIKKTQMVNKPTIGYPE--REDIQSTLFIDSAARSNLEILRTLSGSREQ---- 312 +A+A ISY+ M + G + + D+ + +D++A L L + G R+ Sbjct: 263 SASALISYL--NAMSDPSNFGQYQLYKHDLAQYMKLDASA---LRALNLMPGPRDSMKNM 317 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI-LKSS 371 SL +++ T GGRL A+ + PL + I R + F+ + L +Q+ L+S Sbjct: 318 SLYGLLNHCKTPVGGRLLAQWLKQPLMNHKDIEKRQQLVEAFVTDTELRQTMQESHLRSI 377 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF-----------LKNDLPEELRGA 420 PD+ R R + G+ +D+ + + +N F L + ++LR Sbjct: 378 PDLYRLAKRFQRGKANLEDVVRVYQVVIRIPGFINSFEGVMDEQYQTPLDAEYTDKLRKL 437 Query: 421 VEKLKKLPQSLEKTLSSMLSDD-----LPTFKRDGGFLRDGADASLDETRSLRDQSKRII 475 + L KL + +E T+ D+ P F +R LD+ R D R + Sbjct: 438 SQDLGKLAEMVETTVDLEALDNHEFIIKPEFDDSLRIIRK----KLDKLRHDMDSEHRRV 493 Query: 476 ASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRF 535 ++T+ K L ++++ G+ +T + A ++ +K + T N F Sbjct: 494 GR---DLGQDTE-KKLFLENHRVHGWCFRLTRNEAGCIR----NKREYQECSTQKNGVYF 545 Query: 536 TTLELIDLENRIT------NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDIS 589 TT + L N T + L+ E+ + ++EQ + ++A +D+ Sbjct: 546 TTSTMQALRREHDQLSMNYNRTQTGLVSEVVNVAASYCPLLEQ------LAGILAHLDVI 599 Query: 590 IALAILAKEQ--NYCRPIID--NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPN 645 ++ A ++ Y RP I + N I+K+ RHP +E Q FI ND L Sbjct: 600 VSFAHVSAHAPTAYVRPKIHPRGTGNTILKEARHPCME----MQDDITFITNDVSLI--- 652 Query: 646 DKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADN 705 ++ ++TGPNMGGKST++RQ +I +MAQ G +VP S A + I D + +RVG++D+ Sbjct: 653 -RDESSFLIITGPNMGGKSTYIRQIGVIALMAQTGCFVPCSEAELTIFDSILARVGASDS 711 Query: 706 LASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCR 765 G STFM EM+ETA+IL AT++S +I+DE+GRGT+T DG +AWA E++ +C Sbjct: 712 QLKGVSTFMAEMLETANILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIVTEIKCF 771 Query: 766 GLLATHFHELTDLS----KSLKRFH-NATLQVSDSNEG-------IIFLHKVIPGIADHS 813 L ATHFHELT L K++ H A + + EG + L++V PG+ D S Sbjct: 772 SLFATHFHELTALEERYPKAVSNLHVVAFIGDGPAAEGKQKKKQEVTLLYRVEPGVCDQS 831 Query: 814 YGIQVGKLAGLPNTVISRA 832 +GI V +L P+ V++ A Sbjct: 832 FGIHVAELVRFPDKVVNMA 850 >gi|239610962|gb|EEQ87949.1| DNA mismatch repair protein msh-2 [Ajellomyces dermatitidis ER-3] gi|327351661|gb|EGE80518.1| DNA mismatch repair protein msh-2 [Ajellomyces dermatitidis ATCC 18188] Length = 941 Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 184/618 (29%), Positives = 300/618 (48%), Gaps = 71/618 (11%) Query: 259 AAAAAISYIKKTQMVNKPTIGYPE--REDIQSTLFIDSAARSNLEIL-RTLSGSREQSLL 315 +AAA I Y+ M + G + + D+ + +D+ A L ++ G++ SL Sbjct: 262 SAAALIKYLGA--MSDATNFGQYQLYQHDLSQYMKLDAPALRALNLMPGPRDGAKNMSLY 319 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDV 374 +++ T AG RL A+ + PL + I R + F+ + L +Q+ L+S PD+ Sbjct: 320 GLLNHCKTPAGSRLLAQWLKQPLMNHEDIEKRQQLVEAFVVDTELRQTMQEDHLRSIPDL 379 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL-----FLKNDLPEELRGAVE-----KL 424 R R + +++A + D +R ++ L L++ + E+ +G +E KL Sbjct: 380 YRLAKRFQ------RNLANLEDVVRVYQVVIRLPGFINTLESVMDEQYQGPLEAEYTAKL 433 Query: 425 KKLPQSLEKTLSSMLSD--DLPTFKRDGGFLRDGADASLDETRSLRDQSKR---IIASLQ 479 + L S K L+ M+ DL ++ D SL R D+ K + + Sbjct: 434 RNLSDSFSK-LAEMVETTVDLDALDNHEFIIKPEFDDSLRIIRKKLDKLKHDMDVEHKIV 492 Query: 480 LKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLE 539 K + K L ++++ G+ +T + A ++ +K + T N FTT Sbjct: 493 GKDLNQDTDKKLFLENHRVHGWCFRLTRNEAGCIR----NKREYQECSTQKNGVYFTTST 548 Query: 540 LIDLENRIT------NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALA 593 + N T + L+ E+ + ++EQ S V+A +D+ ++ A Sbjct: 549 MQSFRREHDQLSSNYNRTQTGLVQEVVNVAASYCPLLEQLAS------VLAHLDVIVSFA 602 Query: 594 ILA--KEQNYCRPIID--NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNS 649 ++ Y RP I + N ++K+ RHP +E Q FI ND L +N Sbjct: 603 HVSVHAPTAYVRPKIHPRGTGNTVLKEARHPCME----MQDDISFITNDVFLL----RNE 654 Query: 650 GKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASG 709 ++TGPNMGGKST++RQ +I +MAQ G +VP S A + I D + +RVG++D+ G Sbjct: 655 SSFLIITGPNMGGKSTYIRQIGVIALMAQTGCFVPCSEAELTIFDSILARVGASDSQLKG 714 Query: 710 RSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLA 769 STFM EM+ETA+IL AT++S +I+DE+GRGT+T DG +AWA E++ RC L A Sbjct: 715 VSTFMAEMLETANILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIVTEIRCFALFA 774 Query: 770 THFHELTDLSK----SLKRFH------NATLQVSDSNEG-----IIFLHKVIPGIADHSY 814 THFHELT L + S+K H N T Q + + G + L++V PG+ D S+ Sbjct: 775 THFHELTALQEQYPNSVKNLHVVAFIGNGTEQKENDSTGKSKREVTLLYRVEPGVCDQSF 834 Query: 815 GIQVGKLAGLPNTVISRA 832 GI V +L P V++ A Sbjct: 835 GIHVAELVRFPEKVVNMA 852 >gi|55733310|emb|CAH93337.1| hypothetical protein [Pongo abelii] Length = 886 Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 172/577 (29%), Positives = 273/577 (47%), Gaps = 56/577 (9%) Query: 285 DIQSTLFIDSAARSNLEILRTLSGSRE-----QSLLKTIDYSITGAGGRLFAERIASPLT 339 D + +D AA + L GS E QSL ++ T G RL + I PL Sbjct: 295 DFSQYMKLDIAA---VRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLM 351 Query: 340 DSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 D +I RL+ + F+++ L +Q+ +L+ PD+ R + + +D + GI Sbjct: 352 DKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGI 411 Query: 399 RSGINILNLFLKNDLPEE----------LRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKR 448 N++ K++ + L K + +E TL D+ + Sbjct: 412 NQLPNVIQALEKHEGKHQKLLLAVFVTPLTDLRSDFSKFQEMIETTL------DMDQVEN 465 Query: 449 DGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEV 505 ++ D +L E R + + ++ + S + A + + K +K+ + GY+ V Sbjct: 466 HEFLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRV 525 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT-NAT-----NSALLIEL 559 T VL+ + F N +FT +L L T N T A++ E+ Sbjct: 526 TCKEEKVLRNN----KNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEI 581 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN--YCRPII--DNSTNFIVK 615 + +S+ +E ++L++ V+A +D ++ A ++ Y RP I I+K Sbjct: 582 VN---ISSGYVEPMQTLND---VLAQLDAVVSFAHVSNGAPVPYVRPAILEKGQGRIILK 635 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 RH VE Q FI ND +K+ ++TGPNMGGKST++RQ +IV+ Sbjct: 636 ASRHACVEV----QDEIAFIPNDVYF----EKDKQMFHIITGPNMGGKSTYIRQTGVIVL 687 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+G +VP A + IVD + +RVG+ D+ G STFM EM+ETASIL AT S +I+ Sbjct: 688 MAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIII 747 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGT+T DG +AWA EY+ + ATHFHELT L+ + +N + + Sbjct: 748 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTT 807 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 E + L++V G+ D S+GI V +LA P VI A Sbjct: 808 EETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECA 844 >gi|295659293|ref|XP_002790205.1| DNA mismatch repair protein msh-2 [Paracoccidioides brasiliensis Pb01] gi|226281910|gb|EEH37476.1| DNA mismatch repair protein msh-2 [Paracoccidioides brasiliensis Pb01] Length = 941 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 184/622 (29%), Positives = 292/622 (46%), Gaps = 79/622 (12%) Query: 259 AAAAAISYIKKTQMVNKPTIGYPE--REDIQSTLFIDSAARSNLEIL-RTLSGSREQSLL 315 +AAA I Y+ M + G + + D+ + +D++A L ++ G++ SL Sbjct: 262 SAAALIKYLGA--MSDASNFGQYQLYQHDLSQYMKLDASALRALNLMPGPRDGAKNMSLY 319 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDV 374 +++ T G RL A+ + PL + I R + F+ + L +Q+ L+S PD+ Sbjct: 320 GLLNHCKTPVGSRLLAQWLKQPLMNHADIEKRQQLVEAFVVDTELRQTMQEDQLRSIPDL 379 Query: 375 PRSLSRLKIGRGEPKDIA-----VIRDGIRSGINILNLF--------LKNDLPEELRGAV 421 R R +D+ VIR + IN L L+ + +LR Sbjct: 380 YRLAKRFLRKMANLEDVVRVYQVVIR--LPGFINTLEAVIDEQYQEPLETEYTSKLRSLS 437 Query: 422 EKLKKLPQSLEKTLSSMLSDD-----LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIA 476 + KL + +E T+ D+ P F +R LDE + D R++ Sbjct: 438 DNFSKLAEMVETTVDLDALDNHEFIIKPEFDDSLRIIR----KKLDELKHDMDVEHRMVG 493 Query: 477 SLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFT 536 K + K L ++++ G+ +T + A ++ +K + T N FT Sbjct: 494 ----KDLNQDTDKKLFLENHRVHGWCFRLTRNEAGCIR----NKREYQECSTQKNGVYFT 545 Query: 537 TLELIDLENRIT------NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISI 590 T + L N T + L+ E+ + ++EQ S V+A +D+ + Sbjct: 546 TSTMQSLRREHDQLSSNYNRTQAGLVQEVVNVAASYCPLLEQLAS------VLAHLDVIV 599 Query: 591 ALAILA--KEQNYCRPIID--NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPND 646 + A ++ Y RP I + N I+K+ RHP +E Q FI ND L Sbjct: 600 SFAHVSVHAPSAYVRPKIHPRGTGNTILKEARHPCME----MQDDISFITNDVSLL---- 651 Query: 647 KNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNL 706 +N ++TGPNMGGKST++RQ +I +MAQ G +VP S A + I D + +RVG++D+ Sbjct: 652 RNESSFLIITGPNMGGKSTYIRQIGVIALMAQTGCFVPCSEAELTIFDSILARVGASDSQ 711 Query: 707 ASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRG 766 G STFM EM+ETA+IL AT++S +I+DE+GRGT+T DG +AWA E++ RC Sbjct: 712 LKGVSTFMAEMLETANILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIITEIRCFA 771 Query: 767 LLATHFHELTDLS----KSLKRFHNATLQVSDSNEG------------IIFLHKVIPGIA 810 L ATHFHELT L KS+K H +SD + + L++V PG+ Sbjct: 772 LFATHFHELTALQDRYPKSVKNLHVVAF-ISDGKDAKQNDSADRKKREVTLLYRVEPGVC 830 Query: 811 DHSYGIQVGKLAGLPNTVISRA 832 D S+GI V +L P V++ A Sbjct: 831 DQSFGIHVAELVRFPEKVVNMA 852 >gi|241955156|ref|XP_002420299.1| DNA mismatch repair protein MSH2, putative [Candida dubliniensis CD36] gi|223643640|emb|CAX42523.1| DNA mismatch repair protein MSH2, putative [Candida dubliniensis CD36] Length = 873 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 169/529 (31%), Positives = 270/529 (51%), Gaps = 44/529 (8%) Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 T AG RL A+ + PL D I R + + I + L Q+ L PD+ R L ++ Sbjct: 307 TLAGSRLLAQWLKQPLIDLPLIEERQELVKSMIDDTSLRVETQEFLSKVPDINRLLKKVS 366 Query: 383 IGRGEPKDIAVIRDGIRSG-IN-ILNLF----LKNDLPEELRGAVEKLKKLPQSLEKTLS 436 +G V R G + +N ++NL+ L +L E L V+ K + E+ LS Sbjct: 367 LG--------VKRSGAENKKLNEVVNLYQLVSLLPNLTEIL--TVDYYAKPLKKDEQALS 416 Query: 437 SMLSDDLPTFKRDGGFLRD-----GADASLDETRSLRDQSKRIIASLQLKYAEE----TK 487 T D F +D D SL E + + + + I L L+ ++ T Sbjct: 417 KFCELVETTIDLDTSFDKDYKIKPDFDPSLSEISNTMEAAFKAINDLYLEAGDDLNLDTA 476 Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547 LK++ + G+ + VT + + VL+ K ++ QT+ + FTT+E+ L Sbjct: 477 SNKLKLEQHQTHGWCMRVTRNDSRVLR----GKSQYKELQTVKSGVFFTTIEMKRLSQEY 532 Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII- 606 A + + + E + + + + L + S +A +D+ + A A +Y +P + Sbjct: 533 AKAYDEYNVKQSEVIKEILSLTLTYEPVLQSLSSTLAHLDVITSFATTAMLNSYTQPKLF 592 Query: 607 --DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKS 664 +++ + + RHP++E Q FI+ND + DK+ ++TGPNMGGKS Sbjct: 593 PFESARKINLIESRHPLLE----VQDDVNFISNDVKMG---DKH---FAIITGPNMGGKS 642 Query: 665 TFLRQNALIVIMAQMGSYVPASY-AHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 T++RQ I +MAQ+GS+VPA+ A + I D + SRVG+ D+ G STFM+EM+ET+SI Sbjct: 643 TYIRQIGTIALMAQVGSFVPANEGAELPIFDAILSRVGAGDSQLKGLSTFMIEMLETSSI 702 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLK 783 L AT S +I+DE+GRGT+T DG +AWA E L + +C + ATHFHEL+ LS+ Sbjct: 703 LATATANSLIIIDELGRGTSTYDGFGLAWAISEELIK-RKCFAVFATHFHELSQLSEKYD 761 Query: 784 RFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 N L +NE I ++KV PGI++ S+GI V + +P +I+ A Sbjct: 762 GVENLNLMAEQTNEDITLIYKVGPGISNTSFGISVAEKLHMPEKIINMA 810 >gi|149242571|pdb|2O8E|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR, WITH Adp Bound To Msh2 Only Length = 934 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 172/577 (29%), Positives = 273/577 (47%), Gaps = 56/577 (9%) Query: 285 DIQSTLFIDSAARSNLEILRTLSGSRE-----QSLLKTIDYSITGAGGRLFAERIASPLT 339 D + +D AA + L GS E QSL ++ T G RL + I PL Sbjct: 295 DFSQYMKLDIAA---VRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLM 351 Query: 340 DSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 D +I RL+ + F+++ L +Q+ +L+ PD+ R + + +D + GI Sbjct: 352 DKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGI 411 Query: 399 RSGINILNLFLKNDLPEE----------LRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKR 448 N++ K++ + L K + +E TL D+ + Sbjct: 412 NQLPNVIQALEKHEGKHQKLLLAVFVTPLTDLRSDFSKFQEMIETTL------DMDQVEN 465 Query: 449 DGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEV 505 ++ D +L E R + + ++ + S + A + + K +K+ + GY+ V Sbjct: 466 HEFLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRV 525 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT-NAT-----NSALLIEL 559 T VL+ + F N +FT +L L T N T A++ E+ Sbjct: 526 TCKEEKVLRNN----KNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEI 581 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN--YCRPII--DNSTNFIVK 615 + +S+ +E ++L++ V+A +D ++ A ++ Y RP I I+K Sbjct: 582 VN---ISSGYVEPMQTLND---VLAQLDAVVSFAHVSNGAPVPYVRPAILEKGQGRIILK 635 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 RH VE Q FI ND +K+ ++TGPNMGGKST++RQ +IV+ Sbjct: 636 ASRHACVEV----QDEIAFIPNDVYF----EKDKQMFHIITGPNMGGKSTYIRQTGVIVL 687 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+G +VP A + IVD + +RVG+ D+ G STFM EM+ETASIL AT S +I+ Sbjct: 688 MAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIII 747 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGT+T DG +AWA EY+ + ATHFHELT L+ + +N + + Sbjct: 748 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTT 807 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 E + L++V G+ D S+GI V +LA P VI A Sbjct: 808 EETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECA 844 >gi|14348673|gb|AAK61336.1|AF332582_1 mismatch repair protein Msh2p [Kluyveromyces lactis] Length = 956 Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 174/578 (30%), Positives = 287/578 (49%), Gaps = 65/578 (11%) Query: 294 SAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINF 353 + ++ N +L S + SL + ++ T +G RL E + PLTD +I R D + F Sbjct: 312 TGSQGNTALLSVGSPQKCSSLFQLLNRCKTNSGVRLLNEWLKQPLTDIDQITKRHDLVEF 371 Query: 354 FIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDI----------AVIRDGIRS-- 400 F+ L + +Q+ L S PD+ R +L+ G +D+ VI D ++ Sbjct: 372 FMDQLELRSSLQEECLPSVPDIRRLTKKLQ-KNGNLEDVLKIYQFAQMVPVISDLLKQKS 430 Query: 401 ---GINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFL-RDG 456 N L + +K L + + L+KL + +E T+ DL ++ F+ + Sbjct: 431 EEVDSNDLMILVKEVLLDPMLENANPLEKLKELVETTV------DLEAYEETNEFMIKVE 484 Query: 457 ADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSASVL 513 + L R+ D+ K I ++ L A++ K LK+++++ G+ + +T + A L Sbjct: 485 FNEQLSIIRTHLDELKDAIRTIHLDTADDLGFDPEKKLKLENHHLHGWCMRLTRNDAKAL 544 Query: 514 KKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN------ATNSALLIELESFEILSN 567 ++ ++I T+ F+T EL ++ + ++L+ E+ S + Sbjct: 545 RQ----HKKYIELSTVKAGIFFSTKELKNIAEETSELQKKYEQQQASLVKEIVSITLSYT 600 Query: 568 AIIEQSESLDNASQVIAIIDISIALAILAKEQN--YCRPII-----DNSTNFIVKDGRHP 620 ++E+ S V A +DI + A ++ Y RP + N T ++ RHP Sbjct: 601 PVLEK------LSVVTAQLDILCSFAQVSSYAPIPYVRPKMYPLNDQNRTTELIA-SRHP 653 Query: 621 IVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMG 680 IVE Q FI+ND L + + ++TGPNMGGKST++RQ +I +MAQ+G Sbjct: 654 IVE----MQDDVTFISNDVKLV----QGDSEFIVITGPNMGGKSTYIRQIGVICLMAQIG 705 Query: 681 SYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGR 740 +VP A I VD + RVG+ D+ G STFM+EM+ETASIL AT+ S VI+DE+GR Sbjct: 706 CFVPCDEAKIAAVDAILCRVGAGDSQLKGVSTFMMEMLETASILKNATHNSLVIVDELGR 765 Query: 741 GTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQV------SD 794 GT+T DG +AW+ E++ C L ATHFHELT L+ L N + S Sbjct: 766 GTSTYDGFGLAWSISEHIATNINCFTLFATHFHELTTLADKLDNVSNMHVVAHIEDNGSH 825 Query: 795 SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 +++ I L+KV G +D S+GI V ++ P+ +++ A Sbjct: 826 NSDDITLLYKVEAGSSDQSFGIHVAEVVQFPSKIVNMA 863 >gi|1079805|gb|AAA82080.1| similar to S. cerevisiae Msh2p (Swiss-Prot accession number P25847) and bacterial MutS proteins (Swiss-Prot accession numbers P23909, P10339, and P27345) [Homo sapiens] Length = 887 Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 180/619 (29%), Positives = 286/619 (46%), Gaps = 75/619 (12%) Query: 285 DIQSTLFIDSAARSNLEILRTLSGSRE-----QSLLKTIDYSITGAGGRLFAERIASPLT 339 D + +D AA + L GS E QSL ++ T G RL + I PL Sbjct: 295 DFSQYMKLDIAA---VRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLM 351 Query: 340 DSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 D +I RL+ + F+++ L +Q+ +L+ PD+ R + + +D + GI Sbjct: 352 DKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGI 411 Query: 399 RSGINILNLFLKNDLPEE----------LRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKR 448 N++ K++ + L K + +E TL D+ + Sbjct: 412 NQLPNVIQALEKHEGKHQKLLLAVFVTPLTDLRSDFSKFQEMIETTL------DMDQVEN 465 Query: 449 DGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEV 505 ++ D +L E R + + ++ + S + A + + K +K+ + GY+ V Sbjct: 466 HEFLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRV 525 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT-NAT-----NSALLIEL 559 T VL+ + F N +FT +L L T N T A++ E+ Sbjct: 526 TCKEEKVLRNN----KNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEI 581 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN--YCRPII--DNSTNFIVK 615 + +S+ +E ++L++ V+A +D ++ A ++ Y RP I I+K Sbjct: 582 VN---ISSGYVEPMQTLND---VLAQLDAVVSFAHVSNGAPVPYVRPAILEKGQGRIILK 635 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 RH VE Q FI ND +K+ ++TGPNMGGKST++RQ +IV+ Sbjct: 636 ASRHACVEV----QDEIAFIPNDVYF----EKDKQMFHIITGPNMGGKSTYIRQTGVIVL 687 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+G +VP A + IVD + +RVG+ D+ G STFM EM+ETASIL AT S +I+ Sbjct: 688 MAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIII 747 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGT+T DG +AWA EY+ + ATHFHELT L+ + +N + + Sbjct: 748 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTT 807 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVI------------------SRAYDILK 837 E + L++V G+ D S+GI V +LA P VI S+ YDI++ Sbjct: 808 EETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELEEFQYIGESQGYDIME 867 Query: 838 -TFEKLYHHNQKDMRLYYP 855 +K Y +K R P Sbjct: 868 PAAKKCYLEREKLFRSSCP 886 >gi|260830061|ref|XP_002609980.1| hypothetical protein BRAFLDRAFT_124403 [Branchiostoma floridae] gi|229295342|gb|EEN65990.1| hypothetical protein BRAFLDRAFT_124403 [Branchiostoma floridae] Length = 1226 Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 173/593 (29%), Positives = 290/593 (48%), Gaps = 77/593 (12%) Query: 290 LFIDSAARSNLEILRTLS-GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRL 348 + ++S NLEI + G+ SL ++++ T G R + PL ++I R Sbjct: 641 MILNSTTLKNLEIFANQTDGNERGSLFWVLNHTKTKFGARTLKTWLGKPLLKLSEIEQRQ 700 Query: 349 DSINFFIQNPI-LINPIQKILKSSPDVPRSLSRL---KIGRGEPKDIAVIRDGIRSGINI 404 +++ Q+ + ++ + +L PD+ R L+ + K E I D + ++ Sbjct: 701 EAVTEITQDRLEVLRKAEVMLGKLPDLERGLASIYHKKCSTAEFYSIVSALDKVAVELHG 760 Query: 405 LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLS--SMLSDDLPTFKRDGGFLRDGAD---- 458 N L L + L ++P L+ T S++ + D + Sbjct: 761 YQSIADNQLKSNLLKTI--LIEVPAFLDGTAKFLSLVKEKAAKLGMKNDLFEDWSQFPAV 818 Query: 459 -ASLDE----TRSLRDQSKRIIASLQLKYAEETKIKNLK--IKHNNNLGYFIEVTSSSAS 511 + +E T +LRD + I +L+ + + ++ ++ NNL + + S Sbjct: 819 MKTKEEIDVVTAALRDHRREIRLTLKNPSQDYVMVGGVEFLVEVRNNLLELVPQDWTKIS 878 Query: 512 VLKKDLESKDRF---IHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNA 568 K + R+ + R+ + L R L ++T A L +++F Sbjct: 879 ATK----TATRYHTPVAREMYTMLQR--------LREQLTLDCQQAWLNFVDTF------ 920 Query: 569 IIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPI-IDNSTNFIVKDGRHPIVEKTLK 627 E A +A +D +LA +AK+ YCRP ID T ++ GRHP+++ L Sbjct: 921 -CENYYQYKKAVDHLATLDCLFSLANVAKQDGYCRPFFIDGGTLIHIQHGRHPVIDVLLD 979 Query: 628 QQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASY 687 +Q F+ N + D + + +++GPNMGGKS+++RQ AL+VIMAQ+GSYVPA Sbjct: 980 EQEQ--FVPNSTQM----DGDGKRCMVISGPNMGGKSSYIRQVALMVIMAQVGSYVPAES 1033 Query: 688 AHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDG 747 A +GIVD + SR+G++D++A GRSTFMVE+ E A ILN AT++S VILDE+GRGT+T DG Sbjct: 1034 ASLGIVDAVMSRMGASDDIAHGRSTFMVELQEAAEILNHATSRSLVILDELGRGTSTHDG 1093 Query: 748 LSIAWATIEYLHETNRCRGLLATHFHELTDLS----KSLKRFHNATL-------QVSDSN 796 ++IA+AT+++L +C L THF L +L +S+ +H A L VSD Sbjct: 1094 VAIAYATLQHLVTEVKCLTLFVTHFPPLGELEALYPESMCNYHMAFLVINQGQEMVSDQT 1153 Query: 797 -----------------EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 E + FL++++P +A HSYG+ V +LA +P +++ A Sbjct: 1154 TADGSKNEATKPKAPLPELVTFLYQLVPSMAAHSYGLNVAQLANVPPSILQVA 1206 Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 5/79 (6%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ +Q + IKS PD+L+ G Y LF DDA++A++ LG ++ + C Sbjct: 347 TPLEQQVVYIKSEYPDALLVVECGYKYRLFGDDAVVAAKELGFV-----SYIDHNFMTCS 401 Query: 86 VPVHTANHYIQKLIKIGHR 104 P ++++L+ GH+ Sbjct: 402 FPNQRLFVHVRRLVAKGHK 420 >gi|194385858|dbj|BAG65304.1| unnamed protein product [Homo sapiens] Length = 868 Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 172/577 (29%), Positives = 273/577 (47%), Gaps = 56/577 (9%) Query: 285 DIQSTLFIDSAARSNLEILRTLSGSRE-----QSLLKTIDYSITGAGGRLFAERIASPLT 339 D + +D AA + L GS E QSL ++ T G RL + I PL Sbjct: 229 DFSQYMKLDIAA---VRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLM 285 Query: 340 DSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 D +I RL+ + F+++ L +Q+ +L+ PD+ R + + +D + GI Sbjct: 286 DKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGI 345 Query: 399 RSGINILNLFLKNDLPEE----------LRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKR 448 N++ K++ + L K + +E TL D+ + Sbjct: 346 NQLPNVIQALEKHEGKHQKLLLAVFVTPLTDLRSDFSKFQEMIETTL------DMDQVEN 399 Query: 449 DGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEV 505 ++ D +L E R + + ++ + S + A + + K +K+ + GY+ V Sbjct: 400 HEFLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRV 459 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT-NAT-----NSALLIEL 559 T VL+ + F N +FT +L L T N T A++ E+ Sbjct: 460 TCKEEKVLRNN----KNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEI 515 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN--YCRPII--DNSTNFIVK 615 + +S+ +E ++L++ V+A +D ++ A ++ Y RP I I+K Sbjct: 516 VN---ISSGYVEPMQTLND---VLAQLDAVVSFAHVSNGAPVPYVRPAILEKGQGRIILK 569 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 RH VE Q FI ND +K+ ++TGPNMGGKST++RQ +IV+ Sbjct: 570 ASRHACVEV----QDEIAFIPNDVYF----EKDKQMFHIITGPNMGGKSTYIRQTGVIVL 621 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+G +VP A + IVD + +RVG+ D+ G STFM EM+ETASIL AT S +I+ Sbjct: 622 MAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIII 681 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGT+T DG +AWA EY+ + ATHFHELT L+ + +N + + Sbjct: 682 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTT 741 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 E + L++V G+ D S+GI V +LA P VI A Sbjct: 742 EETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECA 778 >gi|62898129|dbj|BAD97004.1| mutS homolog 2 variant [Homo sapiens] Length = 878 Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 172/577 (29%), Positives = 273/577 (47%), Gaps = 56/577 (9%) Query: 285 DIQSTLFIDSAARSNLEILRTLSGSRE-----QSLLKTIDYSITGAGGRLFAERIASPLT 339 D + +D AA + L GS E QSL ++ T G RL + I PL Sbjct: 295 DFSQYMKLDIAA---VRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLM 351 Query: 340 DSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 D +I RL+ + F+++ L +Q+ +L+ PD+ R + + +D + GI Sbjct: 352 DKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGI 411 Query: 399 RSGINILNLFLKNDLPEE----------LRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKR 448 N++ K++ + L K + +E TL D+ + Sbjct: 412 NQLPNVIQALEKHEGKHQKLLLAVFVTPLTDLRSDFSKFQEMIETTL------DMDQVEN 465 Query: 449 DGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEV 505 ++ D +L E R + + ++ + S + A + + K +K+ + GY+ V Sbjct: 466 HEFLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRV 525 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT-NAT-----NSALLIEL 559 T VL+ + F N +FT +L L T N T A++ E+ Sbjct: 526 TCKEEKVLRNN----KNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEI 581 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN--YCRPII--DNSTNFIVK 615 + +S+ +E ++L++ V+A +D ++ A ++ Y RP I I+K Sbjct: 582 VN---ISSGYVEPMQTLND---VLAQLDAVVSFAHVSNGAPVPYVRPAILGKGQGRIILK 635 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 RH VE Q FI ND +K+ ++TGPNMGGKST++RQ +IV+ Sbjct: 636 ASRHACVEV----QDEIAFIPNDVYF----EKDKQMFHIITGPNMGGKSTYIRQTGVIVL 687 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+G +VP A + IVD + +RVG+ D+ G STFM EM+ETASIL AT S +I+ Sbjct: 688 MAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIII 747 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGT+T DG +AWA EY+ + ATHFHELT L+ + +N + + Sbjct: 748 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTT 807 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 E + L++V G+ D S+GI V +LA P VI A Sbjct: 808 EETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECA 844 >gi|332226455|ref|XP_003262405.1| PREDICTED: DNA mismatch repair protein Msh2 isoform 1 [Nomascus leucogenys] Length = 934 Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 173/577 (29%), Positives = 276/577 (47%), Gaps = 56/577 (9%) Query: 285 DIQSTLFIDSAARSNLEILRTLSGSRE-----QSLLKTIDYSITGAGGRLFAERIASPLT 339 D + +D AA + L GS E QSL ++ T G RL + I PL Sbjct: 295 DFSQYMKLDIAA---VRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLM 351 Query: 340 DSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 D +I RL+ + F+++ L +Q+ +L+ PD+ R + + +D + GI Sbjct: 352 DKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGI 411 Query: 399 RSGINILNLFLKNDLP-EELRGAV---------EKLKKLPQSLEKTLSSMLSDDLPTFKR 448 N++ K++ ++L AV K + +E TL D+ + Sbjct: 412 NQLPNVIQALEKHEGKHQKLLSAVFVTPLTDLRSDFSKFQEMIETTL------DMDQVEN 465 Query: 449 DGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEV 505 ++ D +L E R + + ++ + S + A + + K +K+ + GY+ V Sbjct: 466 HEFLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRV 525 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT-NAT-----NSALLIEL 559 T VL+ + F N +FT +L L T N T A++ E+ Sbjct: 526 TCKEEKVLRNN----KNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEI 581 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN--YCRPII--DNSTNFIVK 615 + +S+ +E ++L++ V+A +D ++ A ++ Y RP I ++K Sbjct: 582 VN---ISSGYVEPMQTLND---VLAQLDAVVSFAHVSNGAPVPYVRPAILEKGQGRIMLK 635 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 RH VE Q FI ND +K+ ++TGPNMGGKST++RQ +IV+ Sbjct: 636 ASRHACVEV----QDEIAFIPNDVYF----EKDKQMFHIITGPNMGGKSTYIRQTGVIVL 687 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+G +VP A + IVD + +RVG+ D+ G STFM EM+ETASIL AT S +I+ Sbjct: 688 MAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIII 747 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGT+T DG +AWA EY+ + ATHFHELT L+ + +N + + Sbjct: 748 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTT 807 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 E + L++V G+ D S+GI V +LA P VI A Sbjct: 808 EETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECA 844 >gi|4557761|ref|NP_000242.1| DNA mismatch repair protein Msh2 [Homo sapiens] gi|1171032|sp|P43246|MSH2_HUMAN RecName: Full=DNA mismatch repair protein Msh2; Short=hMSH2; AltName: Full=MutS protein homolog 2 gi|149242559|pdb|2O8B|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR gi|149242563|pdb|2O8C|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND AN O6-Methyl- Guanine T Mispair gi|149242567|pdb|2O8D|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G DU MISPAIR gi|149242575|pdb|2O8F|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO DNA WITH A SINGLE BASE T Insert gi|432998|gb|AAA61870.1| homolog of bacterial MutS proteins [Swiss-Prot accession numbers P23909, P10339, and P27345]; germline mutations are responsible for hereditary nonpolyposis colon cancer (HNPCC) [Homo sapiens] gi|433147|gb|AAA18643.1| homolog of S. cerevisiae Msh2p [Swiss-Prot accession number P25847] and bacterial MutS proteins [Swiss-Prot accession numbers P23909, P10339, and P27345] [Homo sapiens] gi|1000867|gb|AAB59564.1| DNA mismatch repair protein [Homo sapiens] gi|1000869|gb|AAB59565.1| DNA mismatch repair protein [Homo sapiens] gi|1000881|gb|AAA76858.1| DNA mismatch repair protein [Homo sapiens] gi|18204306|gb|AAH21566.1| MutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli) [Homo sapiens] gi|46488018|gb|AAS99351.1| mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli) [Homo sapiens] gi|119620619|gb|EAX00214.1| mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli), isoform CRA_b [Homo sapiens] gi|123983816|gb|ABM83484.1| mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli) [synthetic construct] gi|123998193|gb|ABM86698.1| mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli) [synthetic construct] gi|224487757|dbj|BAH24113.1| mutS homolog 2, colon cancer, nonpolyposis type 1 [synthetic construct] Length = 934 Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 172/577 (29%), Positives = 273/577 (47%), Gaps = 56/577 (9%) Query: 285 DIQSTLFIDSAARSNLEILRTLSGSRE-----QSLLKTIDYSITGAGGRLFAERIASPLT 339 D + +D AA + L GS E QSL ++ T G RL + I PL Sbjct: 295 DFSQYMKLDIAA---VRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLM 351 Query: 340 DSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 D +I RL+ + F+++ L +Q+ +L+ PD+ R + + +D + GI Sbjct: 352 DKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGI 411 Query: 399 RSGINILNLFLKNDLPEE----------LRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKR 448 N++ K++ + L K + +E TL D+ + Sbjct: 412 NQLPNVIQALEKHEGKHQKLLLAVFVTPLTDLRSDFSKFQEMIETTL------DMDQVEN 465 Query: 449 DGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEV 505 ++ D +L E R + + ++ + S + A + + K +K+ + GY+ V Sbjct: 466 HEFLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRV 525 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT-NAT-----NSALLIEL 559 T VL+ + F N +FT +L L T N T A++ E+ Sbjct: 526 TCKEEKVLRNN----KNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEI 581 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN--YCRPII--DNSTNFIVK 615 + +S+ +E ++L++ V+A +D ++ A ++ Y RP I I+K Sbjct: 582 VN---ISSGYVEPMQTLND---VLAQLDAVVSFAHVSNGAPVPYVRPAILEKGQGRIILK 635 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 RH VE Q FI ND +K+ ++TGPNMGGKST++RQ +IV+ Sbjct: 636 ASRHACVEV----QDEIAFIPNDVYF----EKDKQMFHIITGPNMGGKSTYIRQTGVIVL 687 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+G +VP A + IVD + +RVG+ D+ G STFM EM+ETASIL AT S +I+ Sbjct: 688 MAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIII 747 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGT+T DG +AWA EY+ + ATHFHELT L+ + +N + + Sbjct: 748 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTT 807 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 E + L++V G+ D S+GI V +LA P VI A Sbjct: 808 EETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECA 844 >gi|62897279|dbj|BAD96580.1| mutS homolog 2 variant [Homo sapiens] Length = 878 Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 172/577 (29%), Positives = 273/577 (47%), Gaps = 56/577 (9%) Query: 285 DIQSTLFIDSAARSNLEILRTLSGSRE-----QSLLKTIDYSITGAGGRLFAERIASPLT 339 D + +D AA + L GS E QSL ++ T G RL + I PL Sbjct: 295 DFSQYMKLDIAA---VRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLM 351 Query: 340 DSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 D +I RL+ + F+++ L +Q+ +L+ PD+ R + + +D + GI Sbjct: 352 DKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGI 411 Query: 399 RSGINILNLFLKNDLPEE----------LRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKR 448 N++ K++ + L K + +E TL D+ + Sbjct: 412 NQLPNVIQALEKHEGKHQKLLLAVFVTPLTDLRSDFSKFQEVIETTL------DMDQVEN 465 Query: 449 DGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEV 505 ++ D +L E R + + ++ + S + A + + K +K+ + GY+ V Sbjct: 466 HEFLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRV 525 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT-NAT-----NSALLIEL 559 T VL+ + F N +FT +L L T N T A++ E+ Sbjct: 526 TCKEEKVLRNN----KNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEI 581 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN--YCRPII--DNSTNFIVK 615 + +S+ +E ++L++ V+A +D ++ A ++ Y RP I I+K Sbjct: 582 VN---ISSGYVEPMQTLND---VLAQLDAVVSFAHVSNGAPVPYVRPAILEKGQGRIILK 635 Query: 616 DGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI 675 RH VE Q FI ND +K+ ++TGPNMGGKST++RQ +IV+ Sbjct: 636 ASRHACVEV----QDEIAFIPNDVYF----EKDKQMFHIITGPNMGGKSTYIRQTGVIVL 687 Query: 676 MAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 MAQ+G +VP A + IVD + +RVG+ D+ G STFM EM+ETASIL AT S +I+ Sbjct: 688 MAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIII 747 Query: 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDS 795 DE+GRGT+T DG +AWA EY+ + ATHFHELT L+ + +N + + Sbjct: 748 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTT 807 Query: 796 NEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 E + L++V G+ D S+GI V +LA P VI A Sbjct: 808 EETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECA 844 >gi|320168930|gb|EFW45829.1| Msh2 protein [Capsaspora owczarzaki ATCC 30864] Length = 909 Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 175/598 (29%), Positives = 285/598 (47%), Gaps = 62/598 (10%) Query: 285 DIQSTLFIDSAARSNLEILRTL--SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDST 342 D+ + +D+AA L ++ + G++ +L ++ T G RL A+ + PLT+ Sbjct: 315 DLGQYMRLDAAAVRALNLVASPLDGGNKTMNLTGLLNKCKTAQGQRLLAQWVKQPLTNLA 374 Query: 343 KINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKD----------I 391 +I RL+ + +N L +Q+ L+ PD+ R R + G+ +D + Sbjct: 375 QIEERLNIVELLAENSDLRVALQEDHLRRMPDLHRISKRFQRGKATLQDCVRLYQVCVRL 434 Query: 392 AVIRDGIRSGIN------ILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDD--- 442 +R + +N I++ N L E + KL + +E T+ ++ Sbjct: 435 PALRTALEGYVNHAQYGAIVSERFVNSLGE----IIADCAKLEELVETTIDLERTEQHEF 490 Query: 443 --LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIA-SLQLKYAEETKIKNLKIKHNNNL 499 PTF LR A DE S Q I A L L E K+ LK+++N Sbjct: 491 VIKPTFDERLAALR----AQSDEIGSQIHQQLNIAARDLSL---EPNKV--LKLENNAQF 541 Query: 500 GYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL 559 GYF V+ + + L+ + ++ T + RF + +L L + I+ Sbjct: 542 GYFFRVSRAQEAALR----TSKKYTTIDTKKDGVRFVSPKLRALNDEFAQLKKDYDDIQ- 596 Query: 560 ESFEILSNAIIEQS----ESLDNASQVIAIIDI--SIALAILAKEQNYCRPIID--NSTN 611 L+ +I+ + E L+ + ++A +D+ S A ++ Y RP++ N Sbjct: 597 ---STLATEVIKVAGGYCEPLELLNALVAELDVFASFAHISVSAPTPYVRPVVSAKGEGN 653 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 + RHP +E Q FIAND L + +L ++TGPNMGGKST++RQ Sbjct: 654 IRLFGARHPCLEV----QDDVAFIANDVALV----RGKSELQIITGPNMGGKSTYIRQVG 705 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 ++V++AQ+G +VP + A + IVD + +RVG+ D+ G STFM EM+ETASIL A+ S Sbjct: 706 VVVLLAQIGCFVPCASAEVCIVDSILARVGAGDSQLKGVSTFMAEMLETASILKSASKDS 765 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 +I+DE+GRGT+T DG +AWA E++ L ATHFHELT L+ ++ N + Sbjct: 766 LIIIDELGRGTSTYDGFGLAWAISEHIATKIHGFCLFATHFHELTALADTVPTVSNLHVS 825 Query: 792 VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKD 849 N + L++V PG+ D S+GI V ++A P V+ A E H+ D Sbjct: 826 ALTDNGTLTLLYRVRPGVCDQSFGIHVAQMADFPTKVVEMAKRKALELEDFQGHDHGD 883 >gi|50546479|ref|XP_500709.1| YALI0B10197p [Yarrowia lipolytica] gi|49646575|emb|CAG82954.1| YALI0B10197p [Yarrowia lipolytica] Length = 974 Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 118/283 (41%), Positives = 176/283 (62%), Gaps = 34/283 (12%) Query: 583 IAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLS 642 +A ID I+LA LA E N RP S + DGRH V+ +L+ ++ F++N C L Sbjct: 693 LAYIDTVISLANLANEFNMVRPTTVESGPTEIVDGRHLTVQHSLRVGGTQ-FVSNTCRLD 751 Query: 643 CPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGS 702 P D+ +W+++GPNMGGKSTFLRQNA+IV++AQMGS+VPA A IG+VD+LF R G Sbjct: 752 -PEDQY---VWVVSGPNMGGKSTFLRQNAIIVLLAQMGSFVPAKSAQIGLVDRLFVRAGV 807 Query: 703 ADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETN 762 AD+L +S+FMVEMIET+ IL QA +S VILDE+GRGT+ DG+++A+AT++YL+ + Sbjct: 808 ADDLFRNKSSFMVEMIETSVILRQAGPKSMVILDEVGRGTSFRDGIAVAYATLDYLYRFS 867 Query: 763 RCRGLLATHF-HELTDL------SKSLKRFHNATLQVSDSN------------------- 796 + R L ATHF +E+T+L + + + + L+ D + Sbjct: 868 KSRVLFATHFANEITNLFPDNYDTSGIAYYMSEVLEKEDYSSKNLLAVDPFQRTAHSLYS 927 Query: 797 ---EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 EG+ F +++PGI+ S+GIQ+ + AG P + A +++ Sbjct: 928 LTLEGVQFTRRIVPGISQDSHGIQIAQAAGFPKEAVESALEVV 970 Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 122/446 (27%), Positives = 208/446 (46%), Gaps = 53/446 (11%) Query: 28 MMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVP 87 +M QY PDS+V ++G FYE + A L + + K+ + GK M G P Sbjct: 101 VMSQY-------PDSVVLTQVGSFYEFYGSHADKWGSELHLKVGKKTYNKGKLTSMTGFP 153 Query: 88 VHTANHYIQKLIKI-GHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLS 146 + Y++ L++ ++ ICEQ+E+ + R V R+ TPGTL ++ L Sbjct: 154 LTQLAKYLKILVETYQQKVVICEQVET----DDSSTSLMFSRPVTRIYTPGTLIDEDFLP 209 Query: 147 PTDSNYLMAV----ARIR----------TEWAIAWIDISTGIFKISTSNHDRLISDIMRI 192 NYLM++ IR T I W+D+S G +S S+ L SDI RI Sbjct: 210 TNRYNYLMSIWIAPESIRRPDETKDVAETPVGICWLDVSLGTCSVSRSSLGNLASDIARI 269 Query: 193 DPREIIFSEK----ELSHAE-YKSLFETL-GNVAVAQPNVFFDHSISESRIADYYNITTV 246 P+EI+ ++ EL + E Y L E ++ +QP S ++ ++ + Sbjct: 270 KPQEIVMEKRMKELELENGEFYPELVELRSAPLSYSQPAT----STTDFEFEPFFRVPKA 325 Query: 247 DTFGSFSQVEK---TAAAAAISYIKKTQMVNKPTIGYPERE-DIQSTLFIDSAARSNLEI 302 + +Q++ A A A+ Y K + T P E + + IDS + LE+ Sbjct: 326 YINDTLTQIDSHALKALAMALEYSKSHFPLGTLTFDPPNVELSTEHIMKIDSRSIEALEL 385 Query: 303 LRTLSGSREQ-SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFF-IQNPIL 360 +T+ +R + SLL T++ + T AG R E +++PL +I RLDS+ F +NP+ Sbjct: 386 FKTMRDARTKGSLLSTLNGTKTDAGTRCLTEWLSAPLNHKQEIERRLDSVETFKTRNPLS 445 Query: 361 INPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF-------LKNDL 413 ++ + + D+ R + I RG+P + D S + + +++ K+ L Sbjct: 446 LS-LSAQMAQVKDILRIANMFAINRGKPYQLLEFAD---SCLLVNDMYHRLQTEHAKSAL 501 Query: 414 PEELRGAVEKLKKLPQSLEKTLSSML 439 PE L +E+LK++P L +T+ S + Sbjct: 502 PESLLEQMERLKQVPMDLVETIYSTI 527 >gi|315054281|ref|XP_003176515.1| DNA mismatch repair protein msh-2 [Arthroderma gypseum CBS 118893] gi|311338361|gb|EFQ97563.1| DNA mismatch repair protein msh-2 [Arthroderma gypseum CBS 118893] Length = 943 Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 178/615 (28%), Positives = 298/615 (48%), Gaps = 67/615 (10%) Query: 259 AAAAAISYIKKTQMVNKPTIGYPE--REDIQSTLFIDSAARSNLEIL-RTLSGSREQSLL 315 +A+A ISY+ M + G + + D+ + +D++A L ++ G + SL Sbjct: 263 SASALISYL--NAMSDPSNFGQYQLYKHDLAQYMKLDASALRALNLMPGPRDGMKNMSLY 320 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDV 374 +++ T GGRL A+ + PL + I R + F+ + L +Q+ L+S PD+ Sbjct: 321 GLLNHCKTPVGGRLLAQWLKQPLMNHKDIEKRQQLVEAFVTDTELRQTMQEDHLRSIPDL 380 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVE-----KLKKLPQ 429 R R + G+ +D+ I + +N F + + E+ + ++ KL+KL Q Sbjct: 381 YRLAKRFQRGKANLEDVVRIYQVVIRIPGFINSF-EGVMDEQYQTPLDAEYTTKLRKLSQ 439 Query: 430 SLEKTLSSMLSD--DLPTFKRDGGFLRDGADASL-------DETRSLRDQSKRIIASLQL 480 L K L+ M+ DL ++ D SL D+ R D R + Sbjct: 440 DLGK-LTEMVETTVDLDALDNHEFIIKPEFDDSLRIIRKKLDKLRHDMDSEHRRVGR--- 495 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 ++T+ K L ++++ G+ +T + A ++ +K + T N FTT + Sbjct: 496 DLGQDTE-KKLFLENHRVHGWCFRLTRNEAGCIR----NKREYQECSTQKNGVYFTTSTM 550 Query: 541 IDLENRIT------NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAI 594 L N T + L+ E+ + ++EQ + ++A +D+ ++ A Sbjct: 551 QALRREHDQLSMNYNRTQTGLVSEVVNVAASYCPLLEQ------LAGILAHLDVIVSFAH 604 Query: 595 LAKEQ--NYCRPIID--NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSG 650 ++ Y RP I + N I+K+ RHP +E Q FI ND L ++ Sbjct: 605 VSAHAPTAYVRPKIHPRGTGNTILKEARHPCME----MQDDITFITNDVSLI----RDES 656 Query: 651 KLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGR 710 ++TGPNMGGKST++RQ +I +MAQ G +VP S A + I D + +RVG++D+ G Sbjct: 657 SFLIITGPNMGGKSTYIRQIGVIALMAQTGCFVPCSEAELTIFDSILARVGASDSQLKGV 716 Query: 711 STFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLAT 770 STFM EM+ETA+IL AT++S +I+DE+GRGT+T DG +AWA E++ +C L AT Sbjct: 717 STFMAEMLETANILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIVTEIKCFSLFAT 776 Query: 771 HFHELTDLS----KSLKRFHNATL---------QVSDSNEGIIFLHKVIPGIADHSYGIQ 817 HFHELT L K++ H + + + L++V PG+ D S+GI Sbjct: 777 HFHELTALEERYPKAVSNLHVVAFIGDGPATDEKQQKKKQEVTLLYRVEPGVCDQSFGIH 836 Query: 818 VGKLAGLPNTVISRA 832 V +L P+ V++ A Sbjct: 837 VAELVRFPDKVVNMA 851 >gi|255101106|ref|ZP_05330083.1| DNA mismatch repair protein [Clostridium difficile QCD-63q42] Length = 464 Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 150/457 (32%), Positives = 247/457 (54%), Gaps = 32/457 (7%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TPMM+QY+E+K+ D ++F+R+GDFYE+FF+DAL+AS+ L I LT + L + PMCG Sbjct: 9 TPMMKQYLEVKNRYKDCILFFRLGDFYEMFFEDALVASKALEIALTGKACGLEERAPMCG 68 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLL 145 VP H+AN YI KL++ G+++AI EQ+E P A K +VRR V+R++TPGT+ + LL Sbjct: 69 VPFHSANSYISKLVENGYKVAIGEQMEDPSTA-----KGIVRREVIRVITPGTVLDGNLL 123 Query: 146 SPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKELS 205 +NYL+++ + T + ++DISTG + N D++I +I +I P EII + +L Sbjct: 124 ENKKNNYLLSLYKDGTNIGLTYVDISTGETNATCLNEDKVIEEIAKIHPTEIIIN--DLD 181 Query: 206 HAEYKSLFETLGNVAVAQ--PNVFFDHSISESRIADYY-NITTVDTFGSFSQVEKTAAAA 262 E T+ N+ + + + + D +I + D Y D G K++ + Sbjct: 182 FIEKLRDIATVSNIYINESFSDNYLDINILKEYFPDVYLQKLKFDDKGLI----KSSLSI 237 Query: 263 AISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYS 321 ++YI TQ I + + +D R+NLE+ +T+ G++++ SLL +D + Sbjct: 238 LLNYIYNTQKQITSNINNINIYNSSEYMVLDMFTRTNLELTQTIRGNKKKGSLLHVLDKT 297 Query: 322 ITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL 381 T GGRL + + PL + +KI RLD I + IL + ILK+ D+ R ++ Sbjct: 298 STAMGGRLLRKYVEEPLINKSKIENRLDVIEEIKDDFILREDLNDILKNIYDIERICGKI 357 Query: 382 KIGRGEPKDIAVIRDGI------RSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTL 435 R PK++ +++ I + IN+ N + L+ V ++ KL Sbjct: 358 AFERVTPKELIHLKNSIEKLPNLKDTINLSNAKI-------LKEYVSEMDKLDDIYNLID 410 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSK 472 ++L + T K DG ++ +D S DE + LR+ SK Sbjct: 411 EAILEEPTITIK-DGNIIK--SDFS-DELKELREISK 443 >gi|242051827|ref|XP_002455059.1| hypothetical protein SORBIDRAFT_03g003700 [Sorghum bicolor] gi|241927034|gb|EES00179.1| hypothetical protein SORBIDRAFT_03g003700 [Sorghum bicolor] Length = 1035 Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 221/861 (25%), Positives = 375/861 (43%), Gaps = 143/861 (16%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 L+ + +QY IK D ++F+++G FYEL+ DA + + +T G +GK Sbjct: 191 LRKMSTSQKQYWNIKCKYMDVVLFFKVGKFYELYELDAEIGQKEFDWKMTANG--VGK-C 247 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTE 141 G+ + + KL+ G+++ EQ+ES +AK RG S++ R +V + TP T + Sbjct: 248 RQVGISESGIDDAVDKLVARGYKVGRIEQMESANQAKARGLHSVIERKLVHVSTPSTAAD 307 Query: 142 DQLLSPTDSNYLMAVARIRTE------WAIAWIDISTGIFKISTSNHD----RLISDIMR 191 + TD+ +L+A+ + + A++D + + + D L + +M+ Sbjct: 308 N---IGTDAVHLLALKEVTLASSSSQVYGFAFLDYAALKIWVGSVQDDDSSAALGALLMQ 364 Query: 192 IDPREIIFSEKELSHAEYKSL--FETLGNVAVA-QPNVFFDHS-ISESRI----ADYYNI 243 + PRE+I+ ++ +++ + + G+V + P D S S+ R+ ++N Sbjct: 365 VSPRELIYETSGITKETQRTIRKYASAGSVKMQLTPLSGIDFSDASQIRMLIHSKGFFNA 424 Query: 244 TTVDTFGSFS-----QVEKTAAAAAISYIKKTQM----VNKPTIGYPEREDIQSTLFIDS 294 +T + V A I ++ + + N + Y ++ L +D Sbjct: 425 STESWLSALDCAVNRDVVICALGGLIGHLTRLMLHDALKNGEVLPY---HVYKTCLRMDG 481 Query: 295 AARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINF 353 NLEI +G +L K +++ +T +G RL I PL D +D+IN Sbjct: 482 QTLVNLEIFSNNFNGGSSGTLYKHLNHCVTASGKRLLRRWICHPLKD-------IDAIN- 533 Query: 354 FIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDL 413 ++ ++ +++ P +L L+ + D+ + +RS + + +L Sbjct: 534 -----KRLDVVEGFIQNCGLGPTTLGYLR----KIPDLERLLGQVRSTVGLSSLL----- 579 Query: 414 PEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKR 473 +L EK+ K M + TF LR+G D D Sbjct: 580 --QLPFIGEKILKRRFFFLSVDCFMACSQIKTFTMLINGLRNGIDLLSD----------- 626 Query: 474 IIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLES-KDRFIHRQTMSNL 532 L+ A+ + KI +L E+ + ++ D +D + +NL Sbjct: 627 ------LQRADHGVLALYKIVEIPSLNCLCELIHTFEERIQNDFPCGQDPDVDNNGANNL 680 Query: 533 TRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIAL 592 R L I A+ +L+I NA I ++ S A Sbjct: 681 VRLVEL-------FIGKASEWSLVI--------------------NAVSTIDVLR-SFAA 712 Query: 593 AILAKEQNYCRPII---DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNS 649 L+ CRP + D+ +K HP A + + PND Sbjct: 713 MTLSSFGAMCRPQVLLKDDVPILRMKGLWHPYA------------FAENANGLVPNDLTL 760 Query: 650 GK--------LWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVG 701 G+ LLTGPNMGGKST +R L V++AQ+G YVP + + + D +F+R+G Sbjct: 761 GQDLSGLNRFALLLTGPNMGGKSTIMRATCLAVVLAQLGCYVPCTSCELTLADSIFTRLG 820 Query: 702 SADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHET 761 + D + SG STF+VE ETAS+L AT S V+LDE+GRGT+T DG +IA+A +L E Sbjct: 821 ATDRIMSGESTFLVECTETASVLQNATVDSLVLLDELGRGTSTFDGYAIAYAVFRHLVER 880 Query: 762 NRCRGLLATHFHELTDLSKSLKRFHNATLQ--------VSDSN--EGIIFLHKVIPGIAD 811 RCR L ATH+H LT K + +LQ SD N + + FL+++ G Sbjct: 881 VRCRQLFATHYHSLT---KEFASHPHVSLQHMACMFKPRSDGNGQKELTFLYRLTSGACP 937 Query: 812 HSYGIQVGKLAGLPNTVISRA 832 SYG+QV +AG+P +++ A Sbjct: 938 ESYGLQVATMAGIPKSIVENA 958 >gi|167536501|ref|XP_001749922.1| hypothetical protein [Monosiga brevicollis MX1] gi|163771637|gb|EDQ85301.1| predicted protein [Monosiga brevicollis MX1] Length = 878 Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 231/924 (25%), Positives = 389/924 (42%), Gaps = 157/924 (16%) Query: 45 FYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLI----- 99 F+ GD+Y L DDAL A++ + + + K +P C + I+ L+ Sbjct: 23 FFDRGDYYTLHGDDALYAAKNIFKSQGVLKYYGAKKLPSCSMNQMLFETTIRDLLLQRRY 82 Query: 100 --------KIGHRIAICEQIESPLEAKKRG----NKSLVRRNVVRLVTPGTLTEDQLLSP 147 H+ A+ ++ SP + N LV+ ++V VT DQL+ Sbjct: 83 RVEVFSSSGKSHQWAVTKKA-SPGNTQAFQDILYNSDLVQSSIVLAVTLQGSGNDQLV-- 139 Query: 148 TDSNYLMAVARIRTEWAIAWIDISTGIFKIS----TSNHDRLISDIMRIDPREIIFSEKE 203 +A+ D + F + T+ + + ++++ P+E++ Sbjct: 140 ----------------GVAFCDTAQASFGVCQFPDTAQFNNFEALLVQVGPKEVL----- 178 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTF------------GS 251 L + L L ++ + ++ R ADY V + Sbjct: 179 LPSEQNNPLITKLSQISER-----YGAMVTPRRKADYQAKDVVQDLERLLKLAQDQKAAA 233 Query: 252 FSQVEKTAAAAAISYI----------KKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLE 301 QV++ AA AA+ + T T + + + +DSAA L Sbjct: 234 LPQVDEKAAMAALCCVIHYLDLLADDANTNKFRLSTFNFTQ------YMRLDSAAMRALN 287 Query: 302 ILRTLSGS-REQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL 360 + S + SL +++ T G RL + + PL D +I R D Sbjct: 288 VFPAGPHSTKSHSLFGLLNHCKTLQGQRLLYQWLKQPLLDVNRIRERHD----------- 336 Query: 361 INPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILN----------LFLK 410 ++ LK PD+ R + R +D+ + ++ +++ L Sbjct: 337 ---LETALKKMPDLSRLSKKFARQRARLQDVVSVYMAVKRLPDLIEHLQDFEGTHATLLH 393 Query: 411 NDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDL-----PTFKRDGGFLRDGADASLDETR 465 E+ E +K + +E+T+ +D PTF D R+ D +E Sbjct: 394 KQFLEDFTTLFEDFEKYLELVERTIDLEQADHQNYFIKPTFNEDMQKTREAIDTIEEEIT 453 Query: 466 SLRDQSKRIIASLQLKYAEETKIKNLKIKHN-NNLGYFIEVTSSSASVLKKDLESKDRFI 524 S +++ L L+Y K+LK + + + Y VT + +L+ + + Sbjct: 454 SACEEAAE---DLNLEYG-----KSLKCEQDAKSKQYLFRVTRAYDKLLRNN----KAYT 501 Query: 525 HRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIA 584 +T N +FT L L + I+ E + E ++ + VIA Sbjct: 502 TIETQKNGIKFTNKRLSRLNEARQAQHDRYAEIQAEVAAKVIGIASGYEEPMEELNAVIA 561 Query: 585 IIDI--SIALAILAKEQNYCRPIID--NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCD 640 ++D+ S+A A L Y RP++ N +K RHP +E Q FI ND D Sbjct: 562 VLDVFLSLATASLRAPVPYVRPVMHAMGEGNITLKACRHPCLEV----QDELAFIPNDVD 617 Query: 641 LSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRV 700 L + G+ ++TGPNMGGKST++RQ + V+MAQ+G +VPA+ A I +VD + +R Sbjct: 618 LR----REDGEFQIITGPNMGGKSTYIRQIGMAVLMAQIGCFVPANTAEIAVVDAVLAR- 672 Query: 701 GSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHE 760 G STFM EM+ETASIL+ A+ S +I+DE+GRGT+T DG +AWA E++ + Sbjct: 673 --------GISTFMAEMLETASILSAASRNSLIIVDELGRGTSTYDGFGLAWAISEHIAK 724 Query: 761 TNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGK 820 T L ATHFHELT L+ L N + SN + L+KV PG+ D S+GI V + Sbjct: 725 TIGAFCLFATHFHELTALADELPSVVNLHVDALTSNNELTLLYKVKPGVCDQSFGIHVAE 784 Query: 821 LAGLPNTVIS---RAYDILKTFE---KLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFV 874 + P VI R L+ FE +L K +L + +E + LS FV Sbjct: 785 MVHFPAAVIEDAKRKAAELEDFENTGELGSTPDKKAKL-----EQREGEQLLST----FV 835 Query: 875 EKIKCLNLDEMSPLTALKTLYAVK 898 ++++ + + ++P A + + A++ Sbjct: 836 DQVRSIQAEGLTPEQAFEKVAALR 859 >gi|326477897|gb|EGE01907.1| DNA mismatch repair protein msh-2 [Trichophyton equinum CBS 127.97] Length = 942 Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 180/619 (29%), Positives = 298/619 (48%), Gaps = 76/619 (12%) Query: 259 AAAAAISYIKKTQMVNKPTIGYPE--REDIQSTLFIDSAARSNLEILRTLSGSREQ---- 312 +A+A ISY+ M + G + + D+ + +D++A L L + G R+ Sbjct: 263 SASALISYL--NAMSDPSNFGQYQLYKHDLAQYMKLDASA---LRALNLMPGPRDSMKNM 317 Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK-ILKSS 371 SL +++ T GGRL A+ + PL + I R + F+ + L +Q+ L+S Sbjct: 318 SLYGLLNHCKTPVGGRLLAQWLKQPLMNHKDIEKRQQLVEAFVIDTELRQTMQENHLRSI 377 Query: 372 PDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF-----------LKNDLPEELRGA 420 PD+ R R + G+ +D+ + + +N F L + ++LR Sbjct: 378 PDLYRLAKRFQRGKANLEDVVRVYQVVIRIPGFINSFEGVMDEQYQTPLDAEYTDKLRKL 437 Query: 421 VEKLKKLPQSLEKTLSSMLSDD-----LPTFKRDGGFLRDGADASLDETRSLRDQSKRII 475 + L KL + +E T+ D+ P F +R LD+ R D R + Sbjct: 438 SQDLGKLAEMVETTVDLEALDNHEFIIKPEFDDSLRIIRK----KLDKLRHDMDSEHRRV 493 Query: 476 ASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRF 535 ++T+ K L ++++ G+ +T + A ++ +K + T N F Sbjct: 494 GR---DLGQDTE-KKLFLENHRVHGWCFRLTRNEAGCIR----NKREYQECSTQKNGVYF 545 Query: 536 TTLELIDLENRIT------NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDIS 589 TT + L N T + L+ E+ + ++EQ + ++A +D+ Sbjct: 546 TTSTMQALRREHDQLSMNYNRTQTGLVSEVVNVAASYCPLLEQ------LAGILAHLDVI 599 Query: 590 IALAILAKEQ--NYCRPIID--NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPN 645 ++ A ++ Y RP I + N I+K+ RHP +E Q FI ND L Sbjct: 600 VSFAHVSAHAPTAYVRPKIHPRGTGNTILKEARHPCME----MQDDITFITNDVSLI--- 652 Query: 646 DKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADN 705 ++ ++TGPNMGGKST++RQ +I +MAQ G +VP S A + I D + +RVG++D+ Sbjct: 653 -RDESSFLIITGPNMGGKSTYIRQIGVIALMAQTGCFVPCSEAELTIFDSILARVGASDS 711 Query: 706 LASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCR 765 G STFM EM+ETA+IL AT++S +I+DE+GRGT+T DG +AWA E++ +C Sbjct: 712 QLKGVSTFMAEMLETANILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIVTEIKCF 771 Query: 766 GLLATHFHELTDLS----KSLKRFH-NATLQVSDSNEG-------IIFLHKVIPGIADHS 813 L ATHFHELT L K++ H A + + EG + L++V PG+ D S Sbjct: 772 SLFATHFHELTALEERYPKAVSNLHVVAFIGDGPAAEGKQKKKQEVTLLYRVEPGVCDQS 831 Query: 814 YGIQVGKLAGLPNTVISRA 832 +GI V +L P+ V++ A Sbjct: 832 FGIHVAELVRFPDKVVNMA 850 >gi|242050756|ref|XP_002463122.1| hypothetical protein SORBIDRAFT_02g038230 [Sorghum bicolor] gi|241926499|gb|EER99643.1| hypothetical protein SORBIDRAFT_02g038230 [Sorghum bicolor] Length = 942 Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 191/666 (28%), Positives = 311/666 (46%), Gaps = 103/666 (15%) Query: 282 EREDIQSTLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSIT-GAGGRLFAERIASPLT 339 E+ ++ + +DSAA L I R ++ SL ++ + T G G RL + PL Sbjct: 288 EKYNLNCYMRLDSAAVRALNISERKTDVNKNFSLFGLMNRTCTVGMGKRLLNRWLKQPLL 347 Query: 340 DSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIR 399 D +IN RLD + F+++P L +++ LK D+ R L+ K A ++ ++ Sbjct: 348 DVNEINNRLDMVQAFVEDPELRQGLRQQLKRISDIDRLTHALR------KKSATLQPVVK 401 Query: 400 SGINILNLFLKNDLPEELRGAVEKL--KKLPQSLEKTL--------SSMLSDDL------ 443 + + + E+ G L K + LE+ + SS++ + Sbjct: 402 LYQSCCRISYIKGILEQYNGQFSTLIRSKFLEPLEEWMAEDRFGRFSSLVETTIDLGQLE 461 Query: 444 -------PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKI 493 P + D G L+D + S+ E I +L + A + + K LK+ Sbjct: 462 NGEYRISPLYSSDLGVLKD--ELSVVENH---------INNLHVDTASDLDLSVDKQLKL 510 Query: 494 KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNS 553 + LG+ ++ ++K L ++ +T + +FT+ +L L ++ Sbjct: 511 E-KGPLGHVFRMSKKEEQKVRKKLTGS--YLIIETRKDGVKFTSSKLKKLSDQY-----Q 562 Query: 554 ALLIELESFE--ILSNAII---EQSESLDNASQVIAIIDISIALAILAKEQ--NYCRP-- 604 AL E S + ++ + + SE +N + V++ +D+ + A LA Y RP Sbjct: 563 ALFAEYTSCQKKVVGDVVRVSGSYSEVFENFAAVLSELDVLQSFADLATSCPVPYVRPDI 622 Query: 605 IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLW--LLTGPNMGG 662 + + + ++ RHP +E Q FI NDC L GK W ++TGPNMGG Sbjct: 623 TVSDEGDIVLLGSRHPCLEA----QDGVNFIPNDCTLV------RGKSWFQIITGPNMGG 672 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KSTF+RQ + V+MAQ+GS+VP A + + D +F+RVG+ D G STFM EM+ETAS Sbjct: 673 KSTFIRQVGVNVLMAQVGSFVPCDQASVSVRDCIFARVGAGDCQLHGVSTFMQEMLETAS 732 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK-- 780 IL A+++S +I+DE+GRGT+T DG +AWA E+L E R L ATHFHELT L+ Sbjct: 733 ILKGASDKSLIIIDELGRGTSTYDGFGLAWAICEHLMEVTRAPTLFATHFHELTALAHKN 792 Query: 781 ----------SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVIS 830 + +H + S+ + L+KV PG D S+GI V + A P V++ Sbjct: 793 DDEHQRVSNIGIANYHVGA-HIDPSSRKLTMLYKVEPGACDQSFGIHVAEFANFPEAVVA 851 Query: 831 RAYDILKTFEKL-----YHHNQKD------MRLYYPEIQTKESKNNLSKNDKLFVEKIKC 879 A E + + KD R++ P+ T+ + +LF+E Sbjct: 852 LAKSKAAELEDFSTTPTFSDDSKDEVGSKRKRVFSPDDVTRGAARA-----RLFLEDFAA 906 Query: 880 LNLDEM 885 L +DEM Sbjct: 907 LPVDEM 912 >gi|260940443|ref|XP_002614521.1| hypothetical protein CLUG_05299 [Clavispora lusitaniae ATCC 42720] gi|238851707|gb|EEQ41171.1| hypothetical protein CLUG_05299 [Clavispora lusitaniae ATCC 42720] Length = 1002 Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 239/916 (26%), Positives = 420/916 (45%), Gaps = 128/916 (13%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD----I 81 TP+ +Q+I++KS + D ++ ++G ++ F +DA+ AS+ L I L L + Sbjct: 87 TPLEKQFIDLKSEHGDKILAIQVGYKFKFFGNDAVTASKLLNIMLLPGNLELDERTHDRF 146 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESP-LEAKKRGNKS-LVRRNVVRLVTPGTL 139 C +P + + ++Q+L+ G ++ + +Q E+ +++ + NKS L R + + T T Sbjct: 147 AYCSIPDNRLHVHLQRLLNHGLKVGVVKQTETAAIKSVESSNKSGLFERKLTGVYTKATY 206 Query: 140 TEDQLLS--PTDS------------NYLMAV--ARIRTEWAIAWIDISTG--IFKI--ST 179 D+LL+ PT S Y++ V + + ++ + TG +F + T Sbjct: 207 MGDELLTGDPTISRSNNVADSLDGETYVLCVNESNFSKQTSLVAVQPLTGDIVFDVFSDT 266 Query: 180 SNHDRLISDIMRIDPREIIF--SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRI 237 + D L + +M +P E+I ++E+S K L +A+ Q S +E + Sbjct: 267 PSRDELETRLMYFNPSEVIVITEDEEISPETSKVLRLKNSAMAITQK---IQRSETEIKS 323 Query: 238 ADYYNITTVDTFGSFSQVE-----------KTAAAAAISYIKKTQMVNKPTI--GYPERE 284 + ++VD G + + + I Y+ + ++ N TI + Sbjct: 324 DMHEFFSSVDPDGHNAYLTEHYTLNYPLGIQACIIELIDYLSEFKLSNIFTIPSNFSSLT 383 Query: 285 DIQSTLFIDSAARSNLEILRTLSG--SREQSLLKTIDYSITGAGGRLFAERIASPLTDST 342 D + + ++ L+I +++ +LL +D + T G R + I PL Sbjct: 384 DAHMYMVLPASTLKALDIFEVNEDPTTKKGTLLWLLDNTFTRKGSRTLRKWINRPLVKRE 443 Query: 343 KINTRLDSINFFIQNPIL------INPIQKILKSSPDVPRSLSRL---------KIGRGE 387 +I R +++ + + KI KS D+ RSL ++ KI R + Sbjct: 444 EIEQRAKAVDVLKSGAFVHILDAFKQAVMKIGKSGVDLDRSLIKIHYSATYMSNKITRKD 503 Query: 388 PKDIAVIRDGIRSGINILNLF--LKNDLPEELRGAVEKLKKLPQSLEKTLS---SMLSDD 442 + + +RS IL LF + EE + +V L LE LS + D+ Sbjct: 504 ------LYNMLRSFHEILELFRSFGSKGIEEFK-SVHDCPLLISILEDMLSLSENHTVDE 556 Query: 443 LPTFKRDGGFLRDGA---------DASLDETRSLR---DQSKRIIASLQ---------LK 481 L G L D D S D+ + D+ R+ L LK Sbjct: 557 LLKSINPSGALSDQNLSEQKMKFFDLSQDKFHKISKELDEIARVERKLDDELQNIRKVLK 616 Query: 482 YAEETKIKNLKIKHNNNLGYFIEV-TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 + + I N K H IEV + L D ++ ++RF T E+ Sbjct: 617 RPQLSFITNFKETH------LIEVRNGKNVDALPSD------WVKISGTKTVSRFRTPEV 664 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 L + + L+ E F + + + L +A D ++LA A + Sbjct: 665 TKLHKELQYHNDMLLMACDECFNFFLSEVDSEYIYLRRIVDNLATFDCLLSLARSAADVG 724 Query: 601 ---YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTG 657 + RP + + VK+ HPI+ Q++ ++ ND LS + ++ ++TG Sbjct: 725 DVTFIRPKLVDEQVMSVKNSVHPILLNL--PQNNGQYVPNDIKLST----DDNRVLIITG 778 Query: 658 PNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEM 717 PNMGGKS++++Q AL+ IM Q+G +P S A +GI D +F R+G++DN+ G+STF+VEM Sbjct: 779 PNMGGKSSYVKQIALLAIMTQIGCLLPCSSATMGIFDSIFIRMGASDNILRGKSTFLVEM 838 Query: 718 IETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHE-TNRCRGLLATHFHELT 776 +E+A+I+ T +S VILDEIGRGT T DG+S+A+A + Y+ E + L THF L+ Sbjct: 839 LESANIIQNYTPKSLVILDEIGRGTGTSDGISLAYAILRYIIEDKKKPLTLFITHFPSLS 898 Query: 777 DLS---KSLKRFHNATLQVSDSNEG-------IIFLHKVIPGIADHSYGIQVGKLAGLPN 826 L +K FH A ++ NEG +IFL+K++ G+ +SYG+ V KLAG+ + Sbjct: 899 TLETEFNDVKNFHMAFVE-KKRNEGKESEWPEVIFLYKLVSGVVSNSYGLNVAKLAGIDD 957 Query: 827 TVISRAYDILKTFEKL 842 ++I AY++ ++ ++L Sbjct: 958 SIIQSAYNVSESIKRL 973 >gi|299739901|ref|XP_001840335.2| DNA mismatch repair protein MSH2 [Coprinopsis cinerea okayama7#130] gi|298403994|gb|EAU81391.2| DNA mismatch repair protein MSH2 [Coprinopsis cinerea okayama7#130] Length = 962 Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 174/624 (27%), Positives = 293/624 (46%), Gaps = 88/624 (14%) Query: 285 DIQSTLFIDSAARSNLEILR---TLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDS 341 D+ + +D++A L ++ L S+ ++ ++ T GGRL + PL + Sbjct: 310 DLSQFMRLDASALRALNLVEGPGKLGSSKTTTIFGILNRCKTAQGGRLLGTWLKQPLVNL 369 Query: 342 TKINTRLDSINFFIQNPILINPIQ-KILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRS 400 +I+ R + + F+ + ++ + LK PD+ R R + G +A + D +R Sbjct: 370 HEIHKRQNLVEIFVDDTNSRRTLRDEYLKFMPDLNRIYKRFQKG------VATLEDVVRV 423 Query: 401 GINILNL-------------------FLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 +L L +K + A L K + +E+T+ Sbjct: 424 YQVVLKLPGMVETLESVQAEDEAKLELVKEVFATTYKEAAGSLAKYGEMVEETI------ 477 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN---------LK 492 DL ++ DA L E L +Q K + L AE K+ N L Sbjct: 478 DLDELDNHNYVIKPDYDAKLQE---LAEQLKDVRDGLD---AEHRKVGNATDMELDKKLH 531 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLE------NR 546 +++N GY +T + A K D+ D++I T + F T +L +L + Sbjct: 532 LENNATYGYCFRLTKADAK--KVDM---DKYIEYATTKSGVHFATRKLKELAVQFKELSA 586 Query: 547 ITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILA--KEQNYCRP 604 + + T + ++ ++ + E N + ++A +D+ ++ A +A Y +P Sbjct: 587 LYSKTQTGVVKQVVQIAATYGPVFE------NLNDILAHLDVILSFAEVAVNAPTPYVKP 640 Query: 605 --IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 + +S + I+++ RHP +E Q FI N+ ++ KN + ++TGPNMGG Sbjct: 641 KVVQKDSGSLILEEARHPCLE----VQEGINFIPNNVEMI----KNKSEFQIITGPNMGG 692 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KST++RQ +I +MAQ+GS+VP S A + + D + RVG+ D+ G STFM EM+ETA+ Sbjct: 693 KSTYIRQVGVIALMAQVGSFVPCSEAELPVFDSILCRVGAGDSQLKGVSTFMAEMLETAT 752 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSL 782 IL AT S +I+DE+GRGT+T DG +AWA E++ L ATHFHELT+L + + Sbjct: 753 ILRSATKNSLIIIDELGRGTSTYDGFGLAWAISEHIASEIHAFCLFATHFHELTNLDQQI 812 Query: 783 ---KRFHNATLQVSD------SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAY 833 K FH D S + I+ L++V PG++D S+GI V +LA P V+ A Sbjct: 813 PHVKNFHVVAHVNKDAGGESASKDNIVLLYRVEPGVSDQSFGIHVAELANFPEDVVKLAR 872 Query: 834 DILKTFEKLYHHNQKDMRLYYPEI 857 + E+ K + + PE+ Sbjct: 873 KNAEELEEFKATEDKGQQEFPPEV 896 >gi|726086|gb|AAA75027.1| MutS homolog 2 [Mus musculus] Length = 935 Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 175/584 (29%), Positives = 275/584 (47%), Gaps = 70/584 (11%) Query: 285 DIQSTLFIDSAARSNLEILRTLSGSRE-----QSLLKTIDYSITGAGGRLFAERIASPLT 339 D + +D AA + L GS E QSL ++ T G RL + I PL Sbjct: 295 DFSQYMKLDMAA---VRALNLFQGSVEDTTGSQSLAALLNKCKTAQGQRLVNQWIKQPLM 351 Query: 340 DSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGI 398 D +I RL+ + F+++ L +Q+ +L+ PD+ R + + +D + GI Sbjct: 352 DRNRIEERLNLVEAFVEDSELRQSLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGI 411 Query: 399 RSGINILNLFLKNDLPEELRGAVEKLKKLPQSL-----EKTLSSMLSD------------ 441 N LP ++ A+EK + Q+L L + SD Sbjct: 412 ------------NQLPSVIQ-ALEKYEGRHQALLLAVFVTPLIDLRSDFSKFQEMIETTL 458 Query: 442 DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNN 498 D+ + ++ D +L E R + D ++ + S + A + K +K+ + Sbjct: 459 DMDQVENHEFLVKPSFDPNLSELREVMDGLEKKMQSTLINAARGLGLDPGKQIKLDSSAQ 518 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN------ATN 552 GY+ VT VL+ + F N +FT EL L T Sbjct: 519 FGYYFRVTCKEEKVLRNN----KNFSTVDIQKNGVKFTNSELSSLNEEYTKNKGEYEEAQ 574 Query: 553 SALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAIL--AKEQNYCRPII--DN 608 A++ E+ + +S+ +E ++L++ V+A +D ++ A + A Y RP+I Sbjct: 575 DAIVKEIVN---ISSGYVEPMQTLND---VLAHLDAIVSFAHVSNAAPVPYVRPVILEKG 628 Query: 609 STNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 I+K RH VE Q FI ND +K+ ++TGPNMGGKST++R Sbjct: 629 KGRIILKASRHACVEV----QDEVAFIPNDVHF----EKDKQMFHIITGPNMGGKSTYIR 680 Query: 669 QNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 Q +IV+MAQ+G +VP A + IVD + +RVG+ D+ G STFM EM+ET+SIL AT Sbjct: 681 QTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETSSILRSAT 740 Query: 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNA 788 S +I+DE+GRGT+T DG +AWA +Y+ + ATHFHELT L+ + +N Sbjct: 741 KDSLIIIDELGRGTSTYDGFGLAWAISDYIATKIGAFCMFATHFHELTALANQIPTVNNL 800 Query: 789 TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 + + E + L++V G+ D S+GI V +LA P VI+ A Sbjct: 801 HVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPRHVIACA 844 >gi|134109935|ref|XP_776353.1| hypothetical protein CNBC5700 [Cryptococcus neoformans var. neoformans B-3501A] gi|50259027|gb|EAL21706.1| hypothetical protein CNBC5700 [Cryptococcus neoformans var. neoformans B-3501A] Length = 1191 Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 171/597 (28%), Positives = 300/597 (50%), Gaps = 55/597 (9%) Query: 261 AAAISYIKKTQMVN--KPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQSLLKT 317 A AI Y+K+ + N K T + R +S + + S +NLEI + + G SL+ Sbjct: 565 AVAIRYMKRFGLENAFKHTSSF-VRFANRSHMLLSSNTLANLEIYQNQTDGGLYGSLIWL 623 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQN-PILINPIQKILKSSPDVPR 376 +D+ T G RL E + PL D + R D+I ++N + ++ +L + PD+ R Sbjct: 624 LDHCKTRMGKRLLREWVGRPLLDVAALKARADAIEEIMENNSYHMEKLRSLLINMPDLVR 683 Query: 377 SLSRLKIGRGEPKDIA-----VIRDGIRSGINILNLF---LKNDLPEELRGAVEKLKK-- 426 L+R++ G+ P ++A ++R N+ N+F L N++P L ++ ++ Sbjct: 684 GLTRVQYGKATPNELATLLITLVRLASEFKPNMGNVFRSCLLNNIPNTLPTILDTSQRFL 743 Query: 427 ----LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L Q+ E ++++ +D P D ++D E + ++I+ L+Y Sbjct: 744 NALNLKQARENDVANLWAD--PDRFPDIQDVKDCISVCEMELNEHLMELRKILKKPTLRY 801 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 + I+ Y +EV ++ +++ + R+ T +++ Sbjct: 802 ITVSGIE-----------YLVEVPIRDTKIVPA------QWMKISATRTVNRYHTPKILA 844 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 + T ++ E+F + + E E L S+ IA+ID ++LA A YC Sbjct: 845 ITKERTQHLEKLSIVAREAFIAFQSEVAEYHE-LVVVSKQIAVIDCLMSLAQTAAASGYC 903 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 +P + GRHP+VE L+++S PF D S K G ++TGPNM G Sbjct: 904 KPKFVAEPELKILAGRHPMVE-MLREESYVPF---DIHFS----KEEGTTKIITGPNMAG 955 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KS+ +R ALIV MAQ+GS+VPA+ + + D + +R+G++D + G+STFMVE+ ET+ Sbjct: 956 KSSTVRAMALIVCMAQIGSFVPAASVTLSVHDSVQTRMGASDEIGRGKSTFMVELSETSD 1015 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELT-DLSKS 781 IL T +S V+LDE+GRGT+T DG++IA+AT+ ++ E C L TH+ + DL++ Sbjct: 1016 ILQTITPRSLVVLDELGRGTSTYDGIAIAYATLSHIAEIG-CNTLFVTHYPTVAQDLARE 1074 Query: 782 ----LKRFHNA--TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 + +H + +Q+ D I FL+++ G+ + S+G+ +LAGLP ++ A Sbjct: 1075 KPDKISNWHMSFDEIQMPDGGAEITFLYQLTRGLQEASFGVWCARLAGLPKPILDTA 1131 Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 6/118 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ +Q++EIK N D L+ +G Y+ +DA ASR LGI ++ Sbjct: 240 TPLEKQFMEIKEQNRDVLLLMEVGYKYKFHGEDAKTASRELGIVAFP-----NRNFFTAS 294 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSL-VRRNVVRLVTPGTLTED 142 +P H + +++KL+ +G+++ + Q E+ K N++ R + L T T ED Sbjct: 295 IPTHRLHIHVKKLLSLGYKVGVITQTETAALKKIGDNRNAPFARKLTHLFTAATYVED 352 >gi|167385347|ref|XP_001737309.1| DNA mismatch repair protein MsH2 [Entamoeba dispar SAW760] gi|165899926|gb|EDR26406.1| DNA mismatch repair protein MsH2, putative [Entamoeba dispar SAW760] Length = 630 Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 164/556 (29%), Positives = 271/556 (48%), Gaps = 28/556 (5%) Query: 286 IQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKIN 345 I + + I+ A +E L +E +L K ++ + T G ++ E I PL D KIN Sbjct: 6 IDNGMIIEEEA---IEGLHLFGDKKEMTLFKHLNRTHTKIGEKMIKEWIRQPLIDKDKIN 62 Query: 346 TRLDSINFFIQN-PILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINI 404 RL+ + F +N I + + L PD+ + + I + + + I + + +R +I Sbjct: 63 KRLELVEGFYENSEIRLKIKNEELAIMPDLEKLIK--GINKSDLESIVKLYEAVRISKSI 120 Query: 405 LNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLS-DDLPTFKRDGGFLRDGADASLDE 463 + + E + +E L+++ + +EK +++ D+ K +R+ D L + Sbjct: 121 KEELKEMNNKEIEKEIIEPLERISEEMEKFEEMVVTLIDIEETKNHVFKIREDFDEGLQK 180 Query: 464 TRSLRDQSKRIIASLQLKYAEETKIKNLKIK---HNNNLGYFIEVTSSSASVLKKDLESK 520 R + + + + A + IK KIK HNNNL + V+ S+ +K Sbjct: 181 IRENHKKVEELFEKCLEQAANDLNIKTDKIKIIEHNNNL--ILRVSKSNEKEVK----KN 234 Query: 521 DRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNAS 580 ++ QT+ +FT E+ L + I + E ++ I E+ Sbjct: 235 KKYTIIQTLKGECKFTFKEMQTLNVKRDKLNLKEEEINKKFIEEINKVIEGYKETFKELE 294 Query: 581 QVIAIIDISIALAILAKEQN--YCRPIIDNSTNFIVK--DGRHPIVEKTLKQQSSKPFIA 636 +I ID + A ++ + N Y +P I S I+K RHP++E S FI Sbjct: 295 NIIGYIDCIQSFATVSNDNNQGYAKPRIYESEKGIIKIKKARHPLIE----NNSINTFIE 350 Query: 637 NDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKL 696 ND D+ ++ + ++TGPNMGGKST+LR L VIMAQ+G ++P S A I I DK+ Sbjct: 351 NDIDI----NRKETRFQIITGPNMGGKSTYLRMIGLCVIMAQIGMFIPCSEADISICDKI 406 Query: 697 FSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIE 756 R+G+ DN+ G STFM EM +T+ I+ ++T S V++DE+GRGT+T DG IAW E Sbjct: 407 MCRIGAGDNIVEGMSTFMSEMKDTSEIIKKSTKNSLVLIDELGRGTSTYDGFGIAWGISE 466 Query: 757 YLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGI 816 YL C + ATHFHE+T L K + N ++ ++ ++ +K+ G D S I Sbjct: 467 YLAIDIGCYCVFATHFHEITGLEKRVNGVINKHVEADIIDKQLVLKYKIKNGSTDQSLAI 526 Query: 817 QVGKLAGLPNTVISRA 832 V + A P+ V+ A Sbjct: 527 YVAEWADFPHEVVESA 542 >gi|58264676|ref|XP_569494.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] gi|74686546|sp|Q5KKX1|MSH3_CRYNE RecName: Full=DNA mismatch repair protein MSH3; AltName: Full=MutS protein homolog 3 gi|57225726|gb|AAW42187.1| conserved hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] Length = 1191 Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 171/597 (28%), Positives = 300/597 (50%), Gaps = 55/597 (9%) Query: 261 AAAISYIKKTQMVN--KPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQSLLKT 317 A AI Y+K+ + N K T + R +S + + S +NLEI + + G SL+ Sbjct: 565 AVAIRYMKRFGLENAFKHTSSF-VRFANRSHMLLSSNTLANLEIYQNQTDGGLYGSLIWL 623 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQN-PILINPIQKILKSSPDVPR 376 +D+ T G RL E + PL D + R D+I ++N + ++ +L + PD+ R Sbjct: 624 LDHCKTRMGKRLLREWVGRPLLDVAALKARADAIEEIMENNSYHMEKLRSLLINMPDLVR 683 Query: 377 SLSRLKIGRGEPKDIA-----VIRDGIRSGINILNLF---LKNDLPEELRGAVEKLKK-- 426 L+R++ G+ P ++A ++R N+ N+F L N++P L ++ ++ Sbjct: 684 GLTRVQYGKATPNELATLLITLVRLASEFKPNMGNVFRSCLLNNIPNTLPTILDTSQRFL 743 Query: 427 ----LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 L Q+ E ++++ +D P D ++D E + ++I+ L+Y Sbjct: 744 NALNLKQARENDVANLWAD--PDRFPDIQDVKDCISVCEMELNEHLMELRKILKKPTLRY 801 Query: 483 AEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELID 542 + I+ Y +EV ++ +++ + R+ T +++ Sbjct: 802 ITVSGIE-----------YLVEVPIRDTKIVPA------QWMKISATRTVNRYHTPKILA 844 Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602 + T ++ E+F + + E E L S+ IA+ID ++LA A YC Sbjct: 845 ITKERTQHLEKLSIVAREAFIAFQSEVAEYHE-LVVVSKQIAVIDCLMSLAQTAAASGYC 903 Query: 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGG 662 +P + GRHP+VE L+++S PF D S K G ++TGPNM G Sbjct: 904 KPKFVAEPELKILAGRHPMVE-MLREESYVPF---DIHFS----KEEGTTKIITGPNMAG 955 Query: 663 KSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETAS 722 KS+ +R ALIV MAQ+GS+VPA+ + + D + +R+G++D + G+STFMVE+ ET+ Sbjct: 956 KSSTVRAMALIVCMAQIGSFVPAASVTLSVHDSVQTRMGASDEIGRGKSTFMVELSETSD 1015 Query: 723 ILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELT-DLSKS 781 IL T +S V+LDE+GRGT+T DG++IA+AT+ ++ E C L TH+ + DL++ Sbjct: 1016 ILQTITPRSLVVLDELGRGTSTYDGIAIAYATLSHIAEIG-CNTLFVTHYPTVAQDLARE 1074 Query: 782 ----LKRFHNA--TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 + +H + +Q+ D I FL+++ G+ + S+G+ +LAGLP ++ A Sbjct: 1075 KPDKISNWHMSFDEIQMPDGGAEITFLYQLTRGLQEASFGVWCARLAGLPKPILDTA 1131 Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 6/118 (5%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ +Q++EIK N D L+ +G Y+ +DA ASR LGI ++ Sbjct: 240 TPLEKQFMEIKEQNRDVLLLMEVGYKYKFHGEDAKTASRELGIVAFP-----NRNFFTAS 294 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSL-VRRNVVRLVTPGTLTED 142 +P H + +++KL+ +G+++ + Q E+ K N++ R + L T T ED Sbjct: 295 IPTHRLHIHVKKLLSLGYKVGVITQTETAALKKIGDNRNAPFARKLTHLFTAATYVED 352 >gi|307184088|gb|EFN70623.1| DNA mismatch repair protein Msh2 [Camponotus floridanus] Length = 895 Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 171/573 (29%), Positives = 268/573 (46%), Gaps = 60/573 (10%) Query: 292 IDSAARSNLEI------LRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKIN 345 +DSAA L I + L G+ S+L +D T G RL A+ + PL D + I Sbjct: 270 LDSAAIKALNIEPQIDGVSNLHGNPAASVLTLLDKCRTAQGHRLIAQWVRQPLRDLSLIK 329 Query: 346 TRLDSINFFIQNPILINPIQKIL-----KSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRS 400 R D + + N N ++ IL K PD+ + +L + +D I Sbjct: 330 ERHDIVELLVNN----NELRSILNDDYLKRIPDLQQLAKKLARKKSALQDCY----KIYL 381 Query: 401 GINILNLFLKNDLPEE------------LRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKR 448 ++ L L+ LPE L+ +E + K Q +E+T+ DL ++ Sbjct: 382 CVSYLPKLLEQLLPEANMTALKAMIIDPLKELIEDMDKFQQLVEQTI------DLDAAEK 435 Query: 449 DGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEV 505 + G E + D+++ I K A++ + K LK++ N LGY+ + Sbjct: 436 GDFMVNPGFADDFKELKDAMDETEERIQRQLGKAADDLGMEAGKTLKLESNQQLGYYFRI 495 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEIL 565 T +L+ + R+ + RF +L +L + A N L + + + Sbjct: 496 TLKEEKILRNN----KRYTILDSNKAGVRFRNSKLSELNDEFIVARNKYLERQKDVITEI 551 Query: 566 SNAIIEQSESLDNASQVIAIIDISIALAILAKEQN--YCRPII----DNSTNFIVKDGRH 619 SE++ V+A +D+ A A A N Y RP + + N I RH Sbjct: 552 MGIAAGYSETVRTIGGVLACLDVLTAFASAAISANKVYVRPEMVPSEEGELNLI--QVRH 609 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P +E Q +IAND + ++ ++TGPNMGGKST++R + +MA + Sbjct: 610 PCLE----MQQGVDYIANDINFK----RDQYHFCIITGPNMGGKSTYIRSVGVAALMAHI 661 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GS+VP A I ++D + +R+G+ D+ G STFM EMIETA+IL AT S VI+DE+G Sbjct: 662 GSFVPCDKATISLLDCILARIGADDSQLKGLSTFMTEMIETAAILKTATCNSLVIIDELG 721 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGI 799 RGT+T +G IAW+ E+L + R L ATHFHE+T L++ + N + + + Sbjct: 722 RGTSTYEGCGIAWSIAEHLAKDIRSYCLFATHFHEITRLAEEVPTIQNHHVTALVEDNKL 781 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 L+ V PGI D S+G+ V K+A P VI A Sbjct: 782 TLLYTVKPGICDQSFGLHVAKMANFPPDVIEFA 814 >gi|290999441|ref|XP_002682288.1| predicted protein [Naegleria gruberi] gi|284095915|gb|EFC49544.1| predicted protein [Naegleria gruberi] Length = 722 Score = 220 bits (561), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 176/585 (30%), Positives = 288/585 (49%), Gaps = 74/585 (12%) Query: 290 LFIDSAARSNLEILRTLS-GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRL 348 L +DSA+ S+LEI+R+L G+ +LL ID + T G R+ I PL D +N RL Sbjct: 167 LMLDSASISSLEIVRSLKYGNSHCTLLSHIDNTKTPMGKRIIRSNILQPLLDVNSLNARL 226 Query: 349 DSINFFIQNPILINPIQKILK--SSPDVPRSLSRL----KIGRGEPKDIAVIRDGIRSGI 402 DS + I +L SS D+ L++ K RG + Sbjct: 227 DSTEEILSKEKEFFEIGALLAEFSSIDLSHLLTQFTHTRKNARGSCHTL----------- 275 Query: 403 NILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFK-RDGGFLRDGADASL 461 +LN+ LR + KL KL + + + +L K + L++ D + Sbjct: 276 -VLNII-------SLRKMLSKLPKLESCMREYNTPILQAICSALKFPENESLQEEMDEII 327 Query: 462 DETR--SLRDQSKRIIASL-----------QLKYAE--------------ETKIKNLKIK 494 +E S +++ ++II ++ + KY E E I +LK+K Sbjct: 328 NEKSILSCKNKQQQIIFAVAPEIDALLDIGRKKYIETVEEIHEHHKHCQSEAGISSLKLK 387 Query: 495 HNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSA 554 +N GY S+ K+ ES FI + T +T EL L R+ + Sbjct: 388 YNVRRGYHF-------SIEDKNGESHKMFIQKSKKGKQTHCSTQELNSLNVRLKEIIDEI 440 Query: 555 LLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAK-EQNYCRPIIDNSTNFI 613 L+ L +I L S+ I ++D+ + A L NY RP + Sbjct: 441 YLMTDLVVNRLVESIRNHLSQLYKLSESIGLLDMLYSFATLVTLSNNYVRPEFCSEGPIA 500 Query: 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI 673 +K GRHP++EK L+ Q ++ ND ++ S ++TG NM GKST+L+Q A I Sbjct: 501 IKQGRHPVMEKQLQGQ----YVPNDTFMA-----ESCNFQIITGANMSGKSTYLKQIATI 551 Query: 674 VIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 I+AQ+GS+VP ++ ++ I D++F+R+G+ D++ S STFMVEM E +I+ ATN+S + Sbjct: 552 QILAQIGSFVPCAFCNLRICDRVFTRIGNNDSIESNSSTFMVEMKEVTNIVQNATNKSLI 611 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVS 793 I+DE+GR ++ ++G SIAW+ E+L R L ATH+ EL+DL N+ L+V+ Sbjct: 612 IIDELGRSSSNIEGTSIAWSIAEHLSSI-RAYSLFATHYTELSDLESLYPNIKNSHLRVT 670 Query: 794 DSNEGII-FLHKVIPG-IADHSYGIQVGKLAGLPNTVISRAYDIL 836 + +G + +L+++ PG ++ YGI++ K+ GL + +I+ + IL Sbjct: 671 TTQDGELNYLYQIQPGNCSEDRYGIKLAKMLGLSSKIITESEHIL 715 >gi|170589733|ref|XP_001899628.1| MutS domain III family protein [Brugia malayi] gi|158593841|gb|EDP32436.1| MutS domain III family protein [Brugia malayi] Length = 877 Score = 220 bits (561), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 188/623 (30%), Positives = 288/623 (46%), Gaps = 62/623 (9%) Query: 269 KTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSRE-----QSLLKTIDYSIT 323 K Q+ N + GY ++++SA LE+ + SL ++ T Sbjct: 265 KFQLRNYKSAGY---------MYLNSATIKALELFAAFQEDEDLMNDVGSLYDLLNKCRT 315 Query: 324 GAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDVP---RSLS 379 G RL + I PL D KIN RLD + F+ N + IL+ PD+ R L Sbjct: 316 PQGQRLLRDWIRRPLHDIRKINERLDVVEAFVNNFSCRTILHDDILRRIPDITIITRKLV 375 Query: 380 RLKIGRGEP----------KDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ 429 + K G E K + D + + L + + E L A + +K Sbjct: 376 QKKAGLQECYRLYQVVRLLKRFHQVLDELHASCGPLAPSVNDLCLEPLALAQLQFEKFMA 435 Query: 430 SLEKTLSSMLSDDLPTFKRDGGF-----LRDGADASLDETRSLRDQSKRIIASLQLKYAE 484 +E T+ DL K G + + + A+ + + + K ++ L E Sbjct: 436 LIENTV------DLAYLKEKGSYRILPSIDENLLANAERIHKIEKKCKAVLKQLCSGITE 489 Query: 485 ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLE 544 K+ K +H+ G+ VT + +++ L K I + + RFT +L L Sbjct: 490 TVKLD--KTEHH---GFHFRVTLKAERSIRQ-LGMK---ILETSKGSGVRFTCKDLDTLN 540 Query: 545 NRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQ--NYC 602 + I+ ++ + + + S +A ID +AL+ILA Y Sbjct: 541 REYLKLASCYEAIQSSFVNMVVDISSGYASTFCELSGAVATIDTLVALSILASRSPSGYV 600 Query: 603 RP-IIDNSTNFI-VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 RP I+D + +K RHP++E +S FI+ND L +LTG NM Sbjct: 601 RPQILDEDKQVLELKKCRHPVMEAN---PNSPQFISNDVILG-SEQGGDAMFLMLTGANM 656 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GGKST+LR A+ V++AQMGS+VP A ++D + +R+GS D G STFM EM + Sbjct: 657 GGKSTYLRCCAISVLLAQMGSFVPCESARFSLIDGIHTRIGSCDYQCKGVSTFMAEMNDC 716 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLS- 779 ASIL AT S VI+DE+GRGT+T DG +AWA E + +C + ATH+H+L LS Sbjct: 717 ASILESATCHSLVIVDELGRGTSTYDGFGLAWAIAEDIVSRVKCFCIYATHYHDLAGLSR 776 Query: 780 ---KSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 K LK A+ QV D N +I L+K+IPG+A S+G+ +GK+ GLP V+ A D+L Sbjct: 777 VYPKQLKSVCTAS-QV-DENGQLILLYKIIPGVAGRSFGLNIGKMVGLPENVLQTASDML 834 Query: 837 KTFEKLYHHNQKDMRLYYPEIQT 859 ++ E D + Y +IQ+ Sbjct: 835 ESLEAKNSKISLDEQELYRKIQS 857 >gi|316970814|gb|EFV54686.1| DNA mismatch repair protein Msh6 [Trichinella spiralis] Length = 884 Score = 220 bits (560), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 228/873 (26%), Positives = 395/873 (45%), Gaps = 128/873 (14%) Query: 39 NPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKL 98 +P S VF +G FYEL+ DA++ + L ++ K D CG P + + + +L Sbjct: 37 SPVSPVF-PVGKFYELYHMDAVVGVKNLNLSFMK------GDYAHCGFPEVSFDRFSDQL 89 Query: 99 IKIGHRIAICEQIESPLEAKKRGNKSL-------VRRNVVRLVTPGTLTEDQLLSPTDSN 151 I+ G ++A EQ E+P +KR ++ L +RR + R++T GT T + L D N Sbjct: 90 IEHGFKVARVEQTETPEMLQKRAHQELLPSKEKVIRREICRIITRGTKTYN-FLETEDDN 148 Query: 152 YLMA-------VARIRTEWA-IAWIDISTGIFKISTSNHDRLISDIMRIDPREIIFSEKE 203 ++ +++RT A + I ++S + ++ +D +I Sbjct: 149 VQISQFEDDCDYSQLRTVLASYPPVQILFPRGQLSPQMLNMFKYNLNNVDKEALI----- 203 Query: 204 LSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYN--ITTVDTFGSFSQVEKTAAA 261 E+ + +TL N+A+ + +F + + D+ T +D F Q K A Sbjct: 204 -PKVEFWTAADTLRNLAL---DCYF--GVDDRGNVDWPEALATCIDQQDLFQQTPKPQYA 257 Query: 262 AAIS-------YIKKT------------QMVNKP-TIGYPEREDIQSTL-----FIDSAA 296 IS Y+K+ ++ + P T+ + + L ++ Sbjct: 258 LGISSFGAIVWYLKECLIDHDILRLKNFELYSPPATVEFGKLSSCHQPLKNRYMVLNDIT 317 Query: 297 RSNLEILR-TLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFI 355 NL+I+ S + ++ I+ T G RL + +PL D +I R ++ I Sbjct: 318 LRNLDIVNFERKKSTKVTVYDEINLCKTAMGKRLLHFWLCNPLCDLQEIEQRQVAVRNLI 377 Query: 356 QNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPE 415 + L + K L+ PD+ R L ++ G + + + IN Sbjct: 378 EQTELFESLIKQLREIPDLERLLQKMSSGLFRSRHVQQTQSSRFCPIN------------ 425 Query: 416 ELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKR------DGG-----------FLRDGAD 458 ++L + Q+ L +++ + T + DG F+R G Sbjct: 426 ------QRLCQSQQANANCLQFCITNPVQTTTQHFVGMFDGMFLSSSSLLQALFIRKGGA 479 Query: 459 ASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLE 518 + +S + Q + ET I + ++ + + +K L+ Sbjct: 480 KCFPDIQS-------DVQYFQNAFDHETAKTIGSIIPEEGVDPALDAANQAIVHAEKQLD 532 Query: 519 SKDRFIHRQ-TMSNLTRFTTLELIDLENRITNATNSALLIELESF--EILSNAIIEQSES 575 + + I ++ S R+TT EL DL ++ A+ + + L+ + +N E+ Sbjct: 533 NYLKTIQKRLNCSGFKRYTTKELDDLV-KLLAASEADREVALKDIMRRLFAN-FCERKVK 590 Query: 576 LDNASQVIAIIDISIALAILAK--EQNYCRP----IIDNSTNFIVKDGRHPIVEKTLKQQ 629 A + IA +D+ +A A AK + C P ID T + + HP K +K Q Sbjct: 591 WYAAVENIATLDVLLAFAQYAKCCTREVCCPKFIDAIDGKTFLRLDESVHPCCGK-IKTQ 649 Query: 630 SSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAH 689 +IAND L ++ ++G++ LLTG NMGGKST +RQ ++++AQ+GSYVPA Sbjct: 650 GD--YIANDV-LIGSSESDTGQVLLLTGANMGGKSTLMRQVGTLIVLAQIGSYVPARNFT 706 Query: 690 IGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLS 749 + VD +F+R+G+ D+L +G+ST VE+ ET++IL AT SFVI+DE+GRGT+T DG + Sbjct: 707 LSPVDCIFTRIGARDSLITGQSTLFVELRETSAILKHATIHSFVIIDELGRGTSTWDGTA 766 Query: 750 IAWATIEYLHETNRCRGLLATHFHELTD-LSKSLK-RFHNATLQVSDSNEG-------II 800 IA AT++Y+ CR + +TH+H L D L+ + + R + V + +EG ++ Sbjct: 767 IAHATLQYITNHIGCRTIFSTHYHSLMDSLAANPRIRLGHMACMVENESEGADPTEENVV 826 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAY 833 FL+K+ PG SYG KLAG+ VI +AY Sbjct: 827 FLYKLAPGACPKSYGFNAAKLAGIHVDVIKKAY 859 >gi|296815192|ref|XP_002847933.1| DNA mismatch repair protein msh-2 [Arthroderma otae CBS 113480] gi|238840958|gb|EEQ30620.1| DNA mismatch repair protein msh-2 [Arthroderma otae CBS 113480] Length = 942 Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 181/619 (29%), Positives = 294/619 (47%), Gaps = 73/619 (11%) Query: 259 AAAAAISYIKKTQMVNKPTIGYPE--REDIQSTLFIDSAARSNLEIL-RTLSGSREQSLL 315 +AAA I Y+ M + G + + D+ + +D++A L ++ G + SL Sbjct: 263 SAAALIGYL--NAMSDPSNFGQYQLYKHDLAQYMKLDASALRALNLMPGPRDGVKSMSLY 320 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDV 374 +++ T GGRL A+ + PL + T I R + F+ + L +Q+ L++ PD+ Sbjct: 321 GLLNHCKTPVGGRLLAQWLKQPLMNHTDIEKRQQLVEAFVTDTELRQTMQEDHLRAIPDL 380 Query: 375 PRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLF-----------LKNDLPEELRGAVEK 423 R R + G +D+ + + +N F L + +LR Sbjct: 381 FRLAKRFQRGLANLEDVVRVYQVVIRIPGFINSFEGVMDEKYQAPLDAEYTTKLRKLSND 440 Query: 424 LKKLPQSLEKTLSSMLSDD-----LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASL 478 L KL + +E T+ D+ P F +R LD+ R+ D R + Sbjct: 441 LGKLAEMVETTVDLEALDNHEFIIKPEFDDSLRIIR----KKLDKLRNDMDSEHRRVGR- 495 Query: 479 QLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTL 538 ++T+ K L ++++ G+ +T + A ++ +K + T N FTT Sbjct: 496 --DLGQDTE-KKLFLENHRVHGWCFRLTRNEAGCIR----NKREYQECSTQKNGVYFTTS 548 Query: 539 ELIDLENRIT------NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIAL 592 + L N T S L+ E+ + ++EQ + ++A +D+ ++ Sbjct: 549 TMQSLRREHDQLSMNYNRTQSGLVNEVVNVAASYCPLLEQ------LAGILAHLDVIVSF 602 Query: 593 AILAKEQ--NYCRPIID--NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKN 648 A ++ Y RP I + N I+K+ RHP +E Q FI ND +S DK+ Sbjct: 603 AHVSAHAPTAYVRPKIHPRGTGNTILKEARHPCME----MQDDITFITND--VSLIRDKS 656 Query: 649 SGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLAS 708 S ++TGPNMGGKST++RQ +I +MAQ G +VP S A + I D + +RVG++D+ Sbjct: 657 S--FLIITGPNMGGKSTYIRQIGVIALMAQTGCFVPCSEAELTIFDCILARVGASDSQLK 714 Query: 709 GRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLL 768 G STFM EM+ETA+IL AT++S +I+DE+GRGT+T DG +AWA E++ +C L Sbjct: 715 GVSTFMAEMLETANILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIITEIKCFSLF 774 Query: 769 ATHFHELTDLS----KSLKRFHNATLQVSDSNEG-----------IIFLHKVIPGIADHS 813 ATHFHELT L KS+ H G + L++V PG+ D S Sbjct: 775 ATHFHELTALEERYPKSVSNLHVVAFIGDGPASGDKKPEKGKKQEVTLLYRVEPGVCDQS 834 Query: 814 YGIQVGKLAGLPNTVISRA 832 +GI V +L P+ V++ A Sbjct: 835 FGIHVAELVRFPDKVVNMA 853 >gi|326515768|dbj|BAK07130.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 942 Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 200/695 (28%), Positives = 318/695 (45%), Gaps = 109/695 (15%) Query: 282 EREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDYSIT-GAGGRLFAERIASPLT 339 E+ ++ + +DSAA L I+ + ++ SL ++ + T G G RL + + PL Sbjct: 288 EKFNLDRYMRLDSAAVRALNIVEGKTDVNKNFSLFGLMNRTCTAGMGKRLLNKWLKQPLL 347 Query: 340 DSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRD--- 396 D +IN RLD + F ++P L + +++ LK D+ R + L+ + + + Sbjct: 348 DVNEINNRLDMVQAFAEDPELHHGLRQHLKRISDIDRLIHALRKKSANLQPVVKLYQSCS 407 Query: 397 ------GIRSGIN------ILNLFL---KNDLPEELRGAVEKLKKLPQSLEKT------L 435 G+ N ++ FL + L E G L K L++ + Sbjct: 408 TIPYIKGVLQQYNGQFSTSVMTRFLSSLEEWLTENRYGRFANLVKTAIDLDQVDNGEYRI 467 Query: 436 SSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLK 492 S + S DL K DE + + I +L + A + + K LK Sbjct: 468 SPLYSPDLAVLK--------------DELSEVENH----INNLHMHTATDLDLSVDKQLK 509 Query: 493 IKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATN 552 ++ G+ ++ ++K L + +I +T + +FT+ +L L ++ Sbjct: 510 LE-KGPFGHVFRISKKDEQKVRKKLTTN--YIIIETRKDGVKFTSAKLKKLGDQY----- 561 Query: 553 SALLIELESFE--ILSNAI---IEQSESLDNASQVIAIIDISIALAILAKEQN--YCRPI 605 +LL + S + I+ N + SE +N + +I+ +D+ + A LA Y RP Sbjct: 562 QSLLGDYTSCQKKIVDNVVQVSCTFSEVFENFAAIISELDVLQSFADLAVSCPVPYVRPD 621 Query: 606 IDNST--NFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLW--LLTGPNMG 661 I S + I++ RHP VE Q FI NDC L+ GK W ++TGPNMG Sbjct: 622 ITTSEEGDIILQGSRHPCVEA----QDGVNFIPNDCTLA------RGKSWFQIITGPNMG 671 Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721 GKSTF+RQ + V+MAQ+GS+VP A I + D +F+RVG+ D G STFM EM+ETA Sbjct: 672 GKSTFIRQVGVNVLMAQVGSFVPCDQASISVRDCIFARVGAGDCQLRGVSTFMQEMLETA 731 Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK- 780 SIL A+ +S +I+DE+GRGT+T DG +AWA E+L E R L ATHFHELT L+ Sbjct: 732 SILKGASEKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVTRAPTLFATHFHELTALANK 791 Query: 781 -----------SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVI 829 + +H + S+ + L+KV PG D S+GI V + A P VI Sbjct: 792 NGDQHQHVPDLGIANYHVGA-HIDPSSRKLTMLYKVEPGSCDQSFGIHVAEFANFPEAVI 850 Query: 830 SRAYDILKTFEKLYHH-----------NQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIK 878 + A + E K R++ P+ T+ + +L +E Sbjct: 851 ALAKSKAEELEDFTSAPNLSGEPSDEVGSKRKRVFSPDDVTRGAARA-----RLLLEDFA 905 Query: 879 CLNLDEMSPLTALKTLYAVKAWTLEKYSTDEDSEP 913 L LDE+ A + + +K+ + D S P Sbjct: 906 ALPLDEVDGSKATEMVAKLKS----DFEKDAASNP 936 >gi|226288050|gb|EEH43563.1| DNA mismatch repair protein msh-2 [Paracoccidioides brasiliensis Pb18] Length = 941 Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 182/622 (29%), Positives = 293/622 (47%), Gaps = 79/622 (12%) Query: 259 AAAAAISYIKKTQMVNKPTIGYPE--REDIQSTLFIDSAARSNLEIL-RTLSGSREQSLL 315 +AAA I Y+ M + G + + D+ + +D++A L ++ G++ SL Sbjct: 262 SAAALIKYLGA--MSDASNFGQYQLYQHDLSQYMKLDASALRALNLMPGPRDGAKNMSLY 319 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDV 374 +++ T G RL A+ + PL + I R + F+ + L +Q+ L+S PD+ Sbjct: 320 GLLNHCKTPVGSRLLAQWLKQPLMNHADIEKRQQLVEAFVVDTGLRQTMQEDQLRSIPDL 379 Query: 375 PRSLSRLKIGRGEPKDIA-----VIRDGIRSGINILNLF--------LKNDLPEELRGAV 421 R R +D+ VIR + IN L L+ + +LR Sbjct: 380 YRLAKRFLRKMANLEDVVRVYQVVIR--LPGFINTLEAVIDEQYQEPLETEYTSKLRSLS 437 Query: 422 EKLKKLPQSLEKTLSSMLSDD-----LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIA 476 + KL + +E T+ D+ P F +R+ LD+ + D R++ Sbjct: 438 DNFSKLAEMVETTVDLDALDNHEFIIKPEFDDSLRIIRE----KLDKLKHDMDVEHRMVG 493 Query: 477 SLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFT 536 K + K L ++++ G+ +T + A ++ +K + T N FT Sbjct: 494 ----KDLNQDTDKKLFLENHRVHGWCFRLTRNEAGCIR----NKREYQECSTQKNGVYFT 545 Query: 537 TLELIDLENRIT------NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISI 590 T + L N T + L+ E+ + ++EQ S V+A +D+ + Sbjct: 546 TSTMQSLRREHDQLSSNYNRTQAGLVQEVVNVAASYCPLLEQLAS------VLAHLDVIV 599 Query: 591 ALAILA--KEQNYCRPIID--NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPND 646 + A ++ Y RP I + + I+K+ RHP +E Q FI ND L Sbjct: 600 SFAHVSVHAPSAYVRPKIHPRGTGHTILKEARHPCME----MQDDISFITNDVSLL---- 651 Query: 647 KNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNL 706 +N ++TGPNMGGKST++RQ +I +MAQ G +VP S A + I D + +RVG++D+ Sbjct: 652 RNESSFLIITGPNMGGKSTYIRQIGVIALMAQTGCFVPCSEAELTIFDSILARVGASDSQ 711 Query: 707 ASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRG 766 G STFM EM+ETA+IL AT++S +I+DE+GRGT+T DG +AWA E++ RC Sbjct: 712 LKGVSTFMAEMLETANILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIITEIRCFA 771 Query: 767 LLATHFHELTDLS----KSLKRFHNATLQVSDSNEG------------IIFLHKVIPGIA 810 L ATHFHELT L KS+K H +SD + + L++V PG+ Sbjct: 772 LFATHFHELTALQDRYPKSVKNLHVVAF-ISDGKDAKRNESADRKKREVTLLYRVEPGVC 830 Query: 811 DHSYGIQVGKLAGLPNTVISRA 832 D S+GI V +L P V++ A Sbjct: 831 DQSFGIHVAELVRFPEKVVNMA 852 >gi|259482119|tpe|CBF76294.1| TPA: DNA mismatch repair protein Msh2, putative (AFU_orthologue; AFUA_3G09850) [Aspergillus nidulans FGSC A4] Length = 945 Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 185/619 (29%), Positives = 295/619 (47%), Gaps = 71/619 (11%) Query: 259 AAAAAISYIKKTQMVNKPTIGYPE--REDIQSTLFIDSAARSNLEIL-RTLSGSREQSLL 315 AAA I Y+ M + G + + D+ + +D+AA L ++ GS+ SL Sbjct: 265 GAAALIRYLGV--MSDATNFGQYQLYQHDLAQYMKLDAAALRALNLMPGPRDGSKSMSLF 322 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDV 374 +++ T G RL A+ + PL D +I R + F+ + L +Q+ L+S PD+ Sbjct: 323 GLLNHCKTPVGSRLLAQWLKQPLMDLAEIEKRQRLVEAFVVSTELRQMMQEEHLRSIPDL 382 Query: 375 PRSLSRLKIGRGEPKDIA-VIRDGIR------SGINILNLFLKNDLPEE----LRGAVEK 423 R R + + +D+ V + IR S N+++ + L E LR Sbjct: 383 YRLAKRFQRKQANLEDVVRVYQVAIRLPGFVNSLENVMDEEYQTPLETEYTAKLRNHSAS 442 Query: 424 LKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 L KL + +E T+ DL + ++ D SL R DQ + + A Sbjct: 443 LAKLEEMVETTV------DLDALENHEFIIKPEFDDSLRIIRKKLDQLRHDMYLEHKAVA 496 Query: 484 ---EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 ++ K L ++++ G+ +T + A ++ +K + T N FTT + Sbjct: 497 RDLDQEMDKKLFLENHRVYGWCFRLTRNEAGCIR----NKKAYQECSTQKNGVYFTTSTM 552 Query: 541 IDLENRIT------NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDI--SIAL 592 L N T + L+ E+ + ++EQ + V+A +D+ S A Sbjct: 553 QSLRREHDQLSSNYNRTQTGLVSEVVNVAASYCPVLEQ------LAGVLAHLDVIVSFAH 606 Query: 593 AILAKEQNYCRPIID--NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSG 650 A + Y +P I + N ++K+ RHP +E Q FI ND L ++ Sbjct: 607 ASVHAPTAYTKPKIHPRGTGNTVLKEARHPCME----MQDDISFITNDVSLI----RDES 658 Query: 651 KLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGR 710 ++TGPNMGGKST++R +I +MAQ+G +VP + A + I D + +RVG++D+ G Sbjct: 659 SFLIITGPNMGGKSTYIRMIGVIALMAQIGCFVPCTEAELTIFDCILARVGASDSQLKGV 718 Query: 711 STFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLAT 770 STFM EM+ET++IL AT++S +I+DE+GRGT+T DG +AWA E++ RC GL AT Sbjct: 719 STFMAEMLETSNILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIVTEIRCFGLFAT 778 Query: 771 HFHELTDLS----KSLKRFH-------NATLQVSDSNE------GIIFLHKVIPGIADHS 813 HFHELT L+ KS+K H T D E + L++V PGI D S Sbjct: 779 HFHELTTLADRYPKSVKNLHVVAFIGDGTTANEEDEKEKRKTRQKVTLLYRVEPGICDQS 838 Query: 814 YGIQVGKLAGLPNTVISRA 832 +GI V +L P V++ A Sbjct: 839 FGIHVAELVRFPEKVVNMA 857 >gi|225679033|gb|EEH17317.1| DNA mismatch repair protein MSH2 [Paracoccidioides brasiliensis Pb03] Length = 941 Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 182/622 (29%), Positives = 293/622 (47%), Gaps = 79/622 (12%) Query: 259 AAAAAISYIKKTQMVNKPTIGYPE--REDIQSTLFIDSAARSNLEIL-RTLSGSREQSLL 315 +AAA I Y+ M + G + + D+ + +D++A L ++ G++ SL Sbjct: 262 SAAALIKYLGA--MSDASNFGQYQLYQHDLSQYMKLDASALRALNLMPGPRDGAKNMSLY 319 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDV 374 +++ T G RL A+ + PL + I R + F+ + L +Q+ L+S PD+ Sbjct: 320 GLLNHCKTPVGSRLLAQWLKQPLMNHADIEKRQQLVEAFVVDTELRQTMQEDQLRSIPDL 379 Query: 375 PRSLSRLKIGRGEPKDIA-----VIRDGIRSGINILNLF--------LKNDLPEELRGAV 421 R R +D+ VIR + IN L L+ + +LR Sbjct: 380 YRLAKRFLRKMANLEDVVRVYQVVIR--LPGFINTLEAVIDEQYQEPLETEYTSKLRSLS 437 Query: 422 EKLKKLPQSLEKTLSSMLSDD-----LPTFKRDGGFLRDGADASLDETRSLRDQSKRIIA 476 + KL + +E T+ D+ P F +R+ LD+ + D R++ Sbjct: 438 DNFSKLAEMVETTVDLDALDNHEFIIKPEFDDSLRIIRE----KLDKLKHDMDVEHRMVG 493 Query: 477 SLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFT 536 K + K L ++++ G+ +T + A ++ +K + T N FT Sbjct: 494 ----KDLNQDTDKKLFLENHRVHGWCFRLTRNEAGCIR----NKREYQECSTQKNGVYFT 545 Query: 537 TLELIDLENRIT------NATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISI 590 T + L N T + L+ E+ + ++EQ S V+A +D+ + Sbjct: 546 TSTMQSLRREHDQLSSNYNRTQAGLVQEVVNVAASYCPLLEQLAS------VLAHLDVIV 599 Query: 591 ALAILA--KEQNYCRPIID--NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPND 646 + A ++ Y RP I + + I+K+ RHP +E Q FI ND L Sbjct: 600 SFAHVSVHAPSAYVRPKIHPRGTGHTILKEARHPCME----MQDDISFITNDVSLL---- 651 Query: 647 KNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNL 706 +N ++TGPNMGGKST++RQ +I +MAQ G +VP S A + I D + +RVG++D+ Sbjct: 652 RNESSFLIITGPNMGGKSTYIRQIGVIALMAQTGCFVPCSEAELTIFDSILARVGASDSQ 711 Query: 707 ASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRG 766 G STFM EM+ETA+IL AT++S +I+DE+GRGT+T DG +AWA E++ RC Sbjct: 712 LKGVSTFMAEMLETANILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIITEIRCFA 771 Query: 767 LLATHFHELTDLS----KSLKRFHNATLQVSDSNEG------------IIFLHKVIPGIA 810 L ATHFHELT L KS+K H +SD + + L++V PG+ Sbjct: 772 LFATHFHELTALQDRYPKSVKNLHVVAF-ISDGKDAKRNESADRKKREVTLLYRVEPGVC 830 Query: 811 DHSYGIQVGKLAGLPNTVISRA 832 D S+GI V +L P V++ A Sbjct: 831 DQSFGIHVAELVRFPEKVVNMA 852 >gi|296424353|ref|XP_002841713.1| hypothetical protein [Tuber melanosporum Mel28] gi|295637960|emb|CAZ85904.1| unnamed protein product [Tuber melanosporum] Length = 1161 Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 183/575 (31%), Positives = 298/575 (51%), Gaps = 82/575 (14%) Query: 287 QSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKIN 345 +S + ++ S+LEI R + S + SL T+D + T G R + + PL D ++ Sbjct: 569 RSHMLLNGNTLSSLEIYRNQTDFSTKGSLFWTLDRTKTKFGKRQLRKWVGRPLLDKERLE 628 Query: 346 TRLDSINFFI--QNPILINPIQKILKSSPDVPRSLSRLKIGR-GEPKDIAVIRDGIRSGI 402 R++++ ++P L + + K S D+ + L R+ G+ P+ +++++ R Sbjct: 629 ERIEAVEEIKGGKSPKLERLRELLSKISYDLEKGLIRIYYGKCSRPELLSILQTLNR--- 685 Query: 403 NILNLFLKNDLPEE-------LRGAVEKLKKLPQSLEKTL-----SSMLSDDLPTFKRDG 450 I N F D PE+ L A+ L ++ +E L S DD F +DG Sbjct: 686 -IANTFPPVDKPEDVGFNSKILNEALANLPRIKDDVEAYLDVFNHSQAAKDDKYDFFKDG 744 Query: 451 GFLRDGADASLDETR--------SLRDQSKRIIASLQLK--YAEETKIKNLKIKHNNNLG 500 D +A ++E + L + I A L+ K Y + ++ Sbjct: 745 ----DNYEA-INEHKMGIAGVEGDLNEHLNEIAAVLKRKVVYVSVSGVE----------- 788 Query: 501 YFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIEL- 559 Y +EV S+ ++LK + ++ ++RF T E+I L R + +L E Sbjct: 789 YLVEV-SNEKNILKSVPAT---WVKMNGTRKVSRFHTPEVIKLL-RERDQHKESLAAECN 843 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRH 619 +F I + + + Q +A +D I+LA +A + Y +P V++GRH Sbjct: 844 RAFAKFLAEISTKYQEFRDCVQSLATLDCLISLAAVANQPGYVKPEFTEEPCIEVREGRH 903 Query: 620 PIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM 679 P+VE+ L ++ ND L +DK + ++TGPNMGGKS+F+RQ ALI IMAQ+ Sbjct: 904 PMVEQLLLDA----YVPNDIHLF--SDKQ--RAMIVTGPNMGGKSSFVRQVALIAIMAQV 955 Query: 680 GSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIG 739 GSYVPAS A +G++D +F+R+G+ DN+ +G STFMVE+ ET+ IL QATN+S VILDE+G Sbjct: 956 GSYVPASAARVGMLDAVFTRMGAFDNMMAGESTFMVELNETSDILKQATNRSLVILDELG 1015 Query: 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFH--NATLQVSDSNE 797 RGT+T DG++IA A ++Y+ +T+L KS+ F+ NA ++ ++N+ Sbjct: 1016 RGTSTHDGVAIANAVLDYV----------------ITEL-KSMCLFNAMNAHMKFEEAND 1058 Query: 798 G---IIFLHKVIPGIADHSYGIQVGKLAGLPNTVI 829 G I FL+++ G+A SYG+ V +LAGLP I Sbjct: 1059 GTENITFLYQIGEGVAHRSYGLNVARLAGLPQRCI 1093 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 13/127 (10%) Query: 23 KSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK------- 75 K TP+ RQ +EIK NPD+L+ +G + F +DA AS+ L I GK Sbjct: 248 KKLTPLERQVVEIKRKNPDTLLVIEVGYKFRFFGEDARTASQVLSIMCIP-GKMRFDEHS 306 Query: 76 ---HLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIE-SPLEAKKRGNKSLVRRNVV 131 HL K +P H + ++++L+ GH++ + Q+E + L+A + R + Sbjct: 307 SESHLDK-FASASIPTHRLHVHVKRLVTAGHKVGVVRQVETAALKAAGDNRNAPFERKLT 365 Query: 132 RLVTPGT 138 L T GT Sbjct: 366 NLYTKGT 372 >gi|67537672|ref|XP_662610.1| hypothetical protein AN5006.2 [Aspergillus nidulans FGSC A4] gi|40741894|gb|EAA61084.1| hypothetical protein AN5006.2 [Aspergillus nidulans FGSC A4] Length = 1644 Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 186/625 (29%), Positives = 293/625 (46%), Gaps = 83/625 (13%) Query: 259 AAAAAISYIKKTQMVNKPTIGYPE--REDIQSTLFIDSAARSNLEIL-RTLSGSREQSLL 315 AAA I Y+ M + G + + D+ + +D+AA L ++ GS+ SL Sbjct: 265 GAAALIRYLGV--MSDATNFGQYQLYQHDLAQYMKLDAAALRALNLMPGPRDGSKSMSLF 322 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDV 374 +++ T G RL A+ + PL D +I R + F+ + L +Q+ L+S PD+ Sbjct: 323 GLLNHCKTPVGSRLLAQWLKQPLMDLAEIEKRQRLVEAFVVSTELRQMMQEEHLRSIPDL 382 Query: 375 PRSLSRLKIGRGEPKDIA-VIRDGIR------SGINILNLFLKNDLPEE----LRGAVEK 423 R R + + +D+ V + IR S N+++ + L E LR Sbjct: 383 YRLAKRFQRKQANLEDVVRVYQVAIRLPGFVNSLENVMDEEYQTPLETEYTAKLRNHSAS 442 Query: 424 LKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 L KL + +E T+ DL + ++ D SL R DQ + + Y Sbjct: 443 LAKLEEMVETTV------DLDALENHEFIIKPEFDDSLRIIRKKLDQLRHDM------YL 490 Query: 484 EETKI---------KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTR 534 E + K L ++++ G+ +T + A ++ +K + T N Sbjct: 491 EHKAVARDLDQEMDKKLFLENHRVYGWCFRLTRNEAGCIR----NKKAYQECSTQKNGVY 546 Query: 535 FTTLELIDLENRI------TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDI 588 FTT + L N T + L+ E+ N L+ + V+A +D+ Sbjct: 547 FTTSTMQSLRREHDQLSSNYNRTQTGLVSEV------VNVAASYCPVLEQLAGVLAHLDV 600 Query: 589 --SIALAILAKEQNYCRPIID--NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCP 644 S A A + Y +P I + N ++K+ RHP +E Q FI ND L Sbjct: 601 IVSFAHASVHAPTAYTKPKIHPRGTGNTVLKEARHPCME----MQDDISFITNDVSLI-- 654 Query: 645 NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSAD 704 ++ ++TGPNMGGKST++R +I +MAQ+G +VP + A + I D + +RVG++D Sbjct: 655 --RDESSFLIITGPNMGGKSTYIRMIGVIALMAQIGCFVPCTEAELTIFDCILARVGASD 712 Query: 705 NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC 764 + G STFM EM+ET++IL AT++S +I+DE+GRGT+T DG +AWA E++ RC Sbjct: 713 SQLKGVSTFMAEMLETSNILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIVTEIRC 772 Query: 765 RGLLATHFHELTDLS----KSLKRFH-------NATLQVSDSNE------GIIFLHKVIP 807 GL ATHFHELT L+ KS+K H T D E + L++V P Sbjct: 773 FGLFATHFHELTTLADRYPKSVKNLHVVAFIGDGTTANEEDEKEKRKTRQKVTLLYRVEP 832 Query: 808 GIADHSYGIQVGKLAGLPNTVISRA 832 GI D S+GI V +L P V++ A Sbjct: 833 GICDQSFGIHVAELVRFPEKVVNMA 857 >gi|321450379|gb|EFX62417.1| hypothetical protein DAPPUDRAFT_336969 [Daphnia pulex] Length = 633 Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 160/563 (28%), Positives = 275/563 (48%), Gaps = 76/563 (13%) Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFI---QNPILINPIQKILK 369 S+ ++ + T G RL + PL I +RL+++ FF+ ++P L P +K LK Sbjct: 74 SVYHVLNQTRTKPGARLLRSWLLRPLACRDLIESRLEAVGFFVDHFEDPEL-APFKKFLK 132 Query: 370 SSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFL----KNDLPEE----LRGAV 421 S PD+ + L+ + R +PK+ + + IL + L KN LP + AV Sbjct: 133 SLPDLEKQLTAVLHSRSKPKEFHGLCKSWEQ-LTILCVELQSHYKNVLPLSVALLINSAV 191 Query: 422 EKLKKLP-----------QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQ 470 + LK P S EKT +D P K L + + + ++L+ Sbjct: 192 DSLKMAPFYAEQLSDVAISSGEKTKLFNRLEDYPEMK----MLFEKIQQTESKIQALKPS 247 Query: 471 SKRIIASLQLKYAEET------KIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFI 524 + I L L Y + ++KN I+ + +I+++++ + E + F Sbjct: 248 ICKSIGLLALNYVTVSGDEYLIEVKNALIRAVPS--SWIKISATKQCCRYRSPEVQQLFG 305 Query: 525 HRQTMSNLTRFTTLE-LIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVI 583 + L + + E + + +++ + S + A+ I Sbjct: 306 ELCCLRELLKISADEAWLQFQRQVSTTSYS---------------------TFRRANNAI 344 Query: 584 AIIDISIALAILAKEQNYCRP-IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLS 642 A +D IAL+ +AK +NY RP +D + V GRHP++ + L+Q SS +I ND L Sbjct: 345 ATLDCLIALSDVAKSENYVRPTFVDEAGVLNVSQGRHPVLSRILQQTSSAEYIPNDTKL- 403 Query: 643 CPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGS 702 + + + ++TGPNMGGKS L Q ++V++AQ+GS+VPA A + + +F R+G Sbjct: 404 ---NTDGVRCMIITGPNMGGKSCLLSQVGILVVLAQIGSFVPAVEASLSVFKSIFIRMGL 460 Query: 703 ADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETN 762 D + +GRSTF +EM+ET++IL T++S VI+DE+GRGT T DG +IA+A ++YL + Sbjct: 461 HDEIYAGRSTFFIEMMETSAILKSCTSRSLVIIDELGRGTGTHDGSAIAYAALKYLVKQT 520 Query: 763 RCRGLLATHFHELTDLSKS----LKRFHNA---------TLQVSDSNEGIIFLHKVIPGI 809 +C L TH+ + L + +H +Q E ++FL+ + PG Sbjct: 521 KCITLFVTHYPVIVQLEDEFPGHVANYHMGYILESEKADNVQADCDEEALVFLYTLTPGN 580 Query: 810 ADHSYGIQVGKLAGLPNTVISRA 832 + S+G+ V +LAG+P+++ RA Sbjct: 581 SPKSFGLNVARLAGIPSSITDRA 603 >gi|312216110|emb|CBX96062.1| similar to DNA mismatch repair protein msh-2 [Leptosphaeria maculans] Length = 922 Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 180/613 (29%), Positives = 301/613 (49%), Gaps = 64/613 (10%) Query: 259 AAAAAISYIKKTQMVNKPTIGYPE--REDIQSTLFIDSAARSNLEIL-RTLSGSREQSLL 315 AAA I Y+ M + G + + D+ + +D+AA L ++ G++ SL Sbjct: 255 AAACLIKYL--GVMSDSSNFGQYQLYQHDLTQYMKLDAAALKALNLMPGPRDGAKNMSLY 312 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDV 374 +++ T G RL ++ + PL + I R + F+++ L +Q+ L+S PD+ Sbjct: 313 GLLNHCKTPTGSRLLSQWLKQPLMNVKDIERRQQLVEAFVEDTELRQTMQEEHLRSIPDL 372 Query: 375 PRSLSRLKIGRGEPKDIA-----VIR-DGIRSGIN-ILNLFLKNDLPEELRGAVEKLKKL 427 R + + +D+ VIR G S + +++ K L E ++KL++ Sbjct: 373 YRLAKKFQRKAANLEDVVRAYQVVIRLPGFLSSLEAVMDEKYKEPLDAEY---IDKLRQY 429 Query: 428 PQSLEKTLSSMLSD--DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA-- 483 + L +M+ DL ++ D +L R D+ KR + S + Sbjct: 430 ANAF-AGLQNMVETTVDLEALDNHEFIIKPEYDEALKTIRKRLDRLKRDMESEHMNVGND 488 Query: 484 -EETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL-- 540 ++ K L ++++ G+ +T + A +++ K ++ T N FTT L Sbjct: 489 LDQDTEKKLFLENHKQHGWCFRLTRNEAGCIRQ----KKQYKEISTQKNGVYFTTSRLQE 544 Query: 541 ----IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILA 596 D + N T + L+ E+ S + S+ + L+ + V+A +D+ ++ A ++ Sbjct: 545 KRREFDQLSDTYNRTQTGLVNEVVS--VASSYV----PVLEKLAAVLAHLDVIVSFAHVS 598 Query: 597 --KEQNYCRPIID--NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKL 652 +Y RP + + N I+K+ RHP +E Q FI ND L ++ + Sbjct: 599 VHAPTSYTRPRMHPRGTGNTILKEARHPCLE----MQDDVSFITNDVALV----RDESEF 650 Query: 653 WLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRST 712 ++TGPNMGGKST++RQ +I +MAQ+G +VP S A + I D + +RVG++D+ G ST Sbjct: 651 LIITGPNMGGKSTYIRQIGVIALMAQIGCFVPCSEAELTIFDCILARVGASDSQIKGVST 710 Query: 713 FMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHF 772 FM EM+ETA+IL AT +S +I+DE+GRGT+T DG +AWA EY+ + L ATHF Sbjct: 711 FMAEMLETANILKSATRESLIIIDELGRGTSTYDGFGLAWAISEYIVKEIGAFALFATHF 770 Query: 773 HELTDLSKSLKRFHNATLQVSDSNEG-------------IIFLHKVIPGIADHSYGIQVG 819 HELT L S + N + V+ +EG + L+KV PG +D S+GI V Sbjct: 771 HELTALVDSYPQVQNLHV-VAHISEGTVEEGSEIHKKREVTLLYKVEPGFSDQSFGIHVA 829 Query: 820 KLAGLPNTVISRA 832 +L P VI+ A Sbjct: 830 ELVRFPQKVINMA 842 >gi|328713533|ref|XP_001949991.2| PREDICTED: DNA mismatch repair protein Msh2 [Acyrthosiphon pisum] Length = 697 Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 178/584 (30%), Positives = 289/584 (49%), Gaps = 46/584 (7%) Query: 290 LFIDSAARSNLEILRTLSG--SREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTR 347 + +DSA L + SG S+ S+L + + G RL + I PL D KIN R Sbjct: 99 VHLDSAGVQALNLFSN-SGTMSKNDSILGIFNKCRSPHGQRLLTQWIRQPLRDLNKINER 157 Query: 348 LDSINFFIQNPILINPIQ-KILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILN 406 LD + + + + + + L++ PD+ + +++ + +D I I+ +++ Sbjct: 158 LDIVETLVTDTDIRQQLHDQHLRTIPDLQALMRKIQRKKANLQDCYRIYQAIQKLPDLVQ 217 Query: 407 LFLKND-------LPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADA 459 +D + L+ V + K +E+T+ DL +R ++ G D Sbjct: 218 TLSNSDDKTLNSVITTPLKELVNDMNKYQAMIEETI------DLKLVERGEFLIQSGFDD 271 Query: 460 SLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLES 519 L E R+ D + + S K + I ++K+ N+ G+F +V A + + Sbjct: 272 ELQEMRNQMDDYESKMESNLTKTSGALGI-SVKLDSNSQYGFFFKVLLKDAKTVSNN--- 327 Query: 520 KDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESF--EILSNAIIEQSESLD 577 K + T RF + +L +L N + + L +S E++ A S ++ Sbjct: 328 KSYEVLDTTKGGGMRFRSSKLTEL-NTDYQSIHKNYLEHQKSIVVEVIQTAS-SYSATIL 385 Query: 578 NASQVIAIIDISIALAILAKE--QNYCRPIID-NSTNFI-VKDGRHPIVEKTLKQQSSKP 633 N S+ +A +D+ + ++LA + Y RP + T + +K RHP VE Q S Sbjct: 386 NLSRTLAQLDVLTSFSMLAASSLRPYVRPNLHPQGTGLLDLKQVRHPCVEV----QDSVS 441 Query: 634 FIANDCDLSCPNDKNSGKLW--LLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIG 691 +I ND N GK ++TGPNMGGKST++R A+ V MA MGS+VP A I Sbjct: 442 YIPNDAYF------NQGKCTFNVITGPNMGGKSTYIRSVAVAVFMAHMGSFVPCDAAEIS 495 Query: 692 IVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIA 751 +VD + +RVG+ D+ G STFMVEMIET SIL +AT++S VI+DE+GRGT+T +G IA Sbjct: 496 VVDAILARVGANDSQIKGLSTFMVEMIETVSILKRATSESLVIIDELGRGTSTYEGCGIA 555 Query: 752 WATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIAD 811 A E L + L ATHFHELT L +++ N + +++ + L++V PG D Sbjct: 556 CAIAERLAVETKAFTLFATHFHELTKLHETIPTITNKHVSAVTTDDSLTLLYQVQPGSCD 615 Query: 812 HSYGIQVGKLAGLPNTVISRAYD---ILKTFE--KLYHHNQKDM 850 S+GI V +A P VI A +L++F+ ++ NQK++ Sbjct: 616 KSFGIHVAAMAKFPKNVIQNAAKKLALLESFQNNQILEDNQKEI 659 >gi|255712741|ref|XP_002552653.1| KLTH0C09988p [Lachancea thermotolerans] gi|238934032|emb|CAR22215.1| KLTH0C09988p [Lachancea thermotolerans] Length = 955 Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 171/559 (30%), Positives = 263/559 (47%), Gaps = 53/559 (9%) Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRL 381 T AG RL + + PLTD I R D + F I L +Q L PDV R +L Sbjct: 341 TNAGVRLLNQWLKQPLTDLQAIQNRHDLVEFLIDQLELRQVLQSDYLPLVPDVRRLTKKL 400 Query: 382 -------------KIGRGEPKDIAVIRD--GIRSGINILNLFLKNDLPEELRGAVEKLKK 426 + R P+ V+ D G G + + + + L + L K Sbjct: 401 NKNGGLEDVLKIYQFARKIPEVSQVLEDYLGNMDGGDSIKPLVTETWLQPLNAHITPLDK 460 Query: 427 LPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET 486 + +E T+ +D F F D L + R D K I S+ L AE+ Sbjct: 461 FQEMVETTVDLEAYEDTNEFMIKVDFNED-----LAKIRGELDALKDNIKSIHLDAAEDL 515 Query: 487 KI---KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDL 543 K LK+++++ G+ + +T + L++ +++ T+ F+T EL + Sbjct: 516 GFDPEKKLKLENHHMHGWCMRLTRNDGKALRQ----HRKYLELTTVKAGIYFSTRELKQI 571 Query: 544 ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN--Y 601 + ++ + + + + + L+ S V+A +D+ A A ++ Y Sbjct: 572 AEQTAILQKEYDRLQYDLVKEIVQITLTYTPVLEKLSIVLANLDVLSAFAHVSSYAPIPY 631 Query: 602 CRPII-----DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLT 656 RP + T I RHP++E TL + FI+ND L + + ++T Sbjct: 632 VRPQMHGLGTQRKTELI--GSRHPVLE-TLDDVT---FISNDVRL----ESGKSEFLIIT 681 Query: 657 GPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVE 716 GPNMGGKST++RQ +I +MAQ+G +VP A I +VD + RVG+ D+ G STFMVE Sbjct: 682 GPNMGGKSTYIRQVGVISLMAQIGCFVPCDTAEIAVVDAVLCRVGAGDSQLKGVSTFMVE 741 Query: 717 MIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELT 776 M+ETASIL AT S +I+DE+GRGT+T DG +AW+ E++ RC L ATHFHELT Sbjct: 742 MLETASILKNATENSLIIVDELGRGTSTYDGFGLAWSISEHIARNVRCFALFATHFHELT 801 Query: 777 DLSKSLKRFHNATL--QVSD------SNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTV 828 L+ + N + + D S + I L+KV PGI+D S+GI V ++ P + Sbjct: 802 SLADQVPTVQNMHVIAHIEDARASTHSADDITLLYKVEPGISDQSFGIHVAEVVQFPAKL 861 Query: 829 ISRAYDILKTFEKLYHHNQ 847 +S A E L H +Q Sbjct: 862 VSMAKRKAAELEDLKHDSQ 880 >gi|7012942|gb|AAF35250.1|AF227632_1 mismatch binding protein Mus3 [Zea mays] Length = 629 Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 182/598 (30%), Positives = 283/598 (47%), Gaps = 61/598 (10%) Query: 293 DSAARSNLEILR-TLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSI 351 D+AA NLE+L T +G +L +++ +TG G RL IA PL D +I R ++ Sbjct: 1 DTAALENLELLENTRTGGLSGTLYAQLNHCVTGFGKRLLKRWIAKPLYDCREILRRQSAV 60 Query: 352 NFFIQ-NPILINPIQKILKSSPDVPRSLSRLKIGRGEPK---DIAVIRDGIRSGINILNL 407 F +K L PD+ R L+RL E K + + D + + Sbjct: 61 ATFKGVGQDCAAQFRKDLSRLPDMERLLARLFSSCDENKRSSSVVLYEDASKKLLQQFTS 120 Query: 408 FLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD------------------DLPTFKRD 449 L +++ A + L S L +LS D R+ Sbjct: 121 ALCG--CQQMFHACSSISTLICSEGSQLIDLLSPGKGLSNISSILDRFRDAFDWSDADRN 178 Query: 450 GGFL-RDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLG---YFIEV 505 G F+ +G D D T + ++ I +SL+ E+ K+ + N+G Y IEV Sbjct: 179 GRFIPYEGCDPEFDATCNAIEE---IKSSLKEYLKEQRKLLRPASVNYVNVGKDMYLIEV 235 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEIL 565 S + ++ E + T R+ T EL +L ++ A + E + IL Sbjct: 236 PESLGGSVPRNYELQS------TKKGFYRYWTPELKELILELSKAESEK---ESKLKAIL 286 Query: 566 SNAI---IEQSESLDNASQVIAIIDISIALAILAK--EQNYCRPII------DNSTNFIV 614 N I +E V+A +D+ +LAI + E C P I D++ F Sbjct: 287 QNLIQLFVEHHTEWRQLVSVVAELDVLTSLAIASGYFEGPSCCPTIKESNGTDDTPTFHA 346 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 ++ HPI+ + S F+ ND + P + + +LTGPNMGGKST LRQ L + Sbjct: 347 RNLGHPILRSDSLGKGS--FVPNDVKIGGPGNAS---FIVLTGPNMGGKSTLLRQVCLTI 401 Query: 675 IMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVI 734 I+AQ+G+ VPA + +VD++F R+G+ D++ +G+STF+VE+ ETAS+L+ AT S V+ Sbjct: 402 ILAQIGADVPAEKLELSLVDRIFVRMGARDHIMAGQSTFLVELEETASVLSSATKNSLVV 461 Query: 735 LDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELT----DLSKSLKRFHNATL 790 LDE+GRGT+T DG +IA + +EYL +C GL +TH+H L D SL + Sbjct: 462 LDELGRGTSTSDGQAIAASVLEYLVHQVQCLGLFSTHYHRLAMEHNDTKVSLCHMACEVV 521 Query: 791 QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQK 848 + E + FL+++ PG SYG+ V +LAG+P ++ RA + FE Y K Sbjct: 522 EGGGGLEEVTFLYRLTPGACPKSYGVNVARLAGIPTKLLQRANEKSSEFEANYGKRHK 579 >gi|189211064|ref|XP_001941863.1| DNA mismatch repair protein MSH2 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187977956|gb|EDU44582.1| DNA mismatch repair protein MSH2 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 930 Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 185/623 (29%), Positives = 299/623 (47%), Gaps = 76/623 (12%) Query: 259 AAAAAISYIKKTQMVNKPTIGYPE--REDIQSTLFIDSAARSNLEIL-RTLSGSREQSLL 315 AAA I Y+ M + G + + D+ + +D+AA L ++ G++ SL Sbjct: 255 AAACLIRYL--GVMSDSSNFGQYQLYQHDLSQYMKLDAAALKALNLMPGPRDGAKNMSLY 312 Query: 316 KTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDV 374 +++ T G RL A+ + PL + +I R + F+ + L +Q+ L+S PD+ Sbjct: 313 GLLNHCKTPTGSRLLAQWLKQPLMNVKEIERRQQLVEAFVNDTELRQTMQEEHLRSIPDL 372 Query: 375 PRSLSRLKIGRGEPKDIA-----VIR-DGIRSGIN-ILNLFLKNDLPEE----LRGAVEK 423 R + + +D+ VIR G S + +++ K L E LR Sbjct: 373 YRLAKKFQRKAANLEDVVRAYQVVIRLPGFLSSLEAVMDEQYKEPLDAEYTDKLRQYTTA 432 Query: 424 LKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYA 483 L +E T+ DL ++ D SL R D+ KR + S ++ Sbjct: 433 FAGLQDMVETTV------DLEALDNHEFIIKPEFDESLKIIRKRLDKLKREMESEHMRVG 486 Query: 484 EETKI---KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 ++ K L ++++ G+ +T + A +++ K ++ T N FTT L Sbjct: 487 DDLNQDTEKKLFLENHKVNGWCFRLTRNEAGCIRQ----KKQYHEISTQKNGVYFTTNTL 542 Query: 541 ------IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAI 594 D + N T S L+ E+ S ++++ + E L + V+A +D+ +A A Sbjct: 543 QEKRREFDQLSENYNRTQSGLVNEVVS---VASSYVPVVEKL---AAVLAHLDVIVAFAH 596 Query: 595 LAKEQ--NYCRPIID--NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSG 650 ++ +Y RP + + N I+K+ RHP +E Q FI ND L +N Sbjct: 597 VSVHAPTSYTRPTMHPRGTGNTILKEARHPCME----MQDDISFITNDVSLV----RNES 648 Query: 651 KLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGR 710 + ++TGPNMGGKST++RQ +I +MAQ+G +VP S A + I D + +RVG++D+ G Sbjct: 649 EFLIITGPNMGGKSTYIRQIGVIALMAQIGCFVPCSEAELTIFDCILARVGASDSQIKGV 708 Query: 711 STFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLAT 770 STFM EM+ETA+IL AT +S +I+DE+GRGT+T DG +AWA EY+ + L AT Sbjct: 709 STFMAEMLETANILKSATKESLIIIDELGRGTSTYDGFGLAWAISEYIVKEIGAFALFAT 768 Query: 771 HFHELTDLSKSLKRFHNATLQVSDSNEG---------------------IIFLHKVIPGI 809 HFHELT L + + N + V+ +EG + L+KV PG Sbjct: 769 HFHELTALVDTYPQVQNLHV-VAHISEGSAPVVNDDGDVDMDAVQKKREVTLLYKVEPGF 827 Query: 810 ADHSYGIQVGKLAGLPNTVISRA 832 +D S+GI V +L P VI+ A Sbjct: 828 SDQSFGIHVAELVRFPQKVINMA 850 >gi|71020383|ref|XP_760422.1| hypothetical protein UM04275.1 [Ustilago maydis 521] gi|74700862|sp|Q4P6I8|MSH3_USTMA RecName: Full=DNA mismatch repair protein MSH3; AltName: Full=MutS protein homolog 3 gi|46100091|gb|EAK85324.1| hypothetical protein UM04275.1 [Ustilago maydis 521] Length = 1154 Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 232/935 (24%), Positives = 405/935 (43%), Gaps = 179/935 (19%) Query: 24 SSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPM 83 S TP+ +Q +E+K+ +P L+ +G + + +DA +AS+ L I +++ Sbjct: 233 SYTPLEKQILELKAEHPGVLLIIEVGYKLKFYGEDARIASKELSIMCFPE-----RNLLT 287 Query: 84 CGVPVHTANHYIQKLIKIGHRIAICEQIES-PLEAKKRGNKSLVRRNVVRLVTPGTLTED 142 +PVH + ++++LI+ GH++ + QIE+ L+A + + R + L T T +D Sbjct: 288 AMIPVHRLHIHVKRLIQAGHKVGVVRQIETRALKAASKNAYTPFVRKLTALYTASTWVDD 347 Query: 143 QLLSPTD-------------SNYLMAVARI---------RTEWAIAWIDISTG--IFKIS 178 LS D LMA+ R I ++++TG + Sbjct: 348 --LSSLDDLAANMGDAYTNQPKSLMAIVEQSERGNAQADRVSIGIVSVEVNTGHLTYDQF 405 Query: 179 TSNHDR--LISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVA---------VAQPN-- 225 + H R L + I + P E++ +L+ K + LGN A A P+ Sbjct: 406 SDGHARSELETRIAHLAPAEVLI-PPQLTKPTEKVISYLLGNGADGGVRIERLAAMPDYN 464 Query: 226 --------VFFDHSISE-----------SRIADYYNITTVDTFG-------------SFS 253 + D + S AD + T G S Sbjct: 465 QAFQSVTRFYRDRGLESPEVPEVPEVPGSSEADTTRLATTLADGADKRSSPLISLIVSLP 524 Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPERE-DIQSTLFIDSAARSNLEILRTLSGSREQ 312 Q+ A A I +++ Q+ + T+ R ++T+ ++S +NLEI RT + E+ Sbjct: 525 QLSLIALAQIIQHLQAFQLESICTLSTNFRSFSSRTTMLLNSNTLANLEIFRTANEQTER 584 Query: 313 -SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQN-PILINPIQKILKS 370 SL+ +D + G RL + ++ PLTD K+ RLD++ ++ + +L Sbjct: 585 GSLIWLLDKCKSAMGRRLLRKWVSRPLTDIDKLQERLDAVEALRDGKSYVLRRLDSVLHG 644 Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQS 430 PD+ R L+R+ GR P EL + L ++ Q Sbjct: 645 LPDLERGLARMTYGRAT--------------------------PTELATVLLSLNRVTQE 678 Query: 431 LEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 + +D+ T+K + D L S + + + + +K A + Sbjct: 679 FK-------ADEAATWKTQSSLI----DTHLLSLASGKQVVQTYLNQISIKEARANNKAD 727 Query: 491 LKIKHNNNLGYFIEVTSSSASV----LKKDLESKDRFIHRQTMSNLT----------RFT 536 L + + ++ I+ + + ++ L++ L + +HR ++ ++ R Sbjct: 728 LYL--DADVFPAIQASKDNMAIIDGELREHLREIRKLLHRPSLDYVSVAGVDYLVEVRVA 785 Query: 537 TLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQ--------------- 581 + + +E +AT S + LS + E+LD A+Q Sbjct: 786 DAKKVPVEWLRVSATKSMVRFHTPEVMRLSKIRDQHKETLDAAAQEAFARFVRELCKSEY 845 Query: 582 --------VIAIIDISIALAILAKEQNYCRPII-------DNSTNFIVKDGRHPIVEKTL 626 +A++D+ ++LA +A+ Y RP+ + S + RH I+E Sbjct: 846 VVLRNVVASLAVLDVLLSLAHVARAAGYTRPVFLRQPQDAEASVPVEIIGMRHAILEVV- 904 Query: 627 KQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPAS 686 S+ P+I ND LS +SG LL+G NMGGKS+ +R L++IMAQ+GS+V A Sbjct: 905 ---SAMPYIPNDVSLST---GDSGAAILLSGCNMGGKSSVVRALGLVIIMAQIGSFVAAD 958 Query: 687 YAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLD 746 A IG+ D ++ R+G+ D + SGRST+MVE+ ETA IL T++S VILDE+GRGT++ D Sbjct: 959 VARIGVHDAVYVRMGARDRMFSGRSTYMVEVSETADILGSLTSRSMVILDELGRGTSSRD 1018 Query: 747 GLSIAWATIEYLHETNRC--RGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGII---- 800 G +A +EYL T C + TH+ +L + + N + + ++ ++ Sbjct: 1019 GYCLAAGVLEYL-LTLGCPPNTVFITHYLQLASMQRRYPHLRNMHMAFTSNSRNLLDPIH 1077 Query: 801 FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI 835 ++K+ PGIA HS+GI LA LP +I A I Sbjct: 1078 LVYKLRPGIA-HSFGIHAAHLARLPLQIIHSASTI 1111 >gi|301611824|ref|XP_002935427.1| PREDICTED: LOW QUALITY PROTEIN: DNA mismatch repair protein Msh2, partial [Xenopus (Silurana) tropicalis] Length = 878 Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 175/589 (29%), Positives = 278/589 (47%), Gaps = 76/589 (12%) Query: 337 PLTDSTKINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIR 395 PL D +I RL+ + F+ + L +Q+ +L+ PD+ R + + + A ++ Sbjct: 293 PLMDKNRIEERLNLVEAFVTDAELRQCLQEDLLRRFPDLNRLAKKFQ------RQTANLQ 346 Query: 396 DGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSL-----EKTLSSMLSD--------- 441 D R + N LP ++ A+EK + Q L LS + SD Sbjct: 347 DCYRLYQAV------NQLPGVIQ-AIEKYEGTHQMLLLAVFATPLSDLSSDFSKFQEMIE 399 Query: 442 ---DLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKH 495 D+ + ++ D +L E R ++ ++ + + A E + K++K++ Sbjct: 400 TTLDMDQVENHEFLVKASFDPNLTELREKMNELEKNMQAALNGAARELGLDAGKSIKLES 459 Query: 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 N+ +G+F VT L+ N +FTT+++ R TN S+L Sbjct: 460 NSQVGHFFRVTCKEEKALR----------------NNKKFTTIDIQKNGVRFTNGKLSSL 503 Query: 556 LIEL----ESFEILSNAIIEQ--------SESLDNASQVIAIIDISIALAILAKEQN--Y 601 E E +E NAI+++ + + + VIA +D +++ A ++ Y Sbjct: 504 SEEYMRNREEYEEAQNAIVKEIISISAGYVDPIQTLNDVIAQLDAAVSFAYVSNSAPVPY 563 Query: 602 CRPII--DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPN 659 RP+I +++ RHP +E Q FI ND +K ++TGPN Sbjct: 564 VRPVILEKGQGKIMLQSARHPCIE----MQDDVAFIPNDITF----EKEKQMFHIITGPN 615 Query: 660 MGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIE 719 MGGKST++RQ +IV+MAQ+GS+VP A I IVD + +RVG+ D+ G STFM EM+E Sbjct: 616 MGGKSTYIRQTGVIVLMAQIGSFVPCDSAEISIVDCILARVGAGDSQLKGVSTFMAEMLE 675 Query: 720 TASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLS 779 TASIL AT S +I+DE+GRGT+T DG +AWA EY+ + + ATHFHELT L+ Sbjct: 676 TASILRSATENSLIIIDELGRGTSTYDGFGLAWAISEYISTKIKAFCMFATHFHELTALA 735 Query: 780 KSLKRFHNATLQVSDSNEGII-FLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYD-ILK 837 + +N + S F+ G+ D S+GI V +LA P VI A + L+ Sbjct: 736 DQVPTVNNLHVTXXXSQHNYSDFVFYFFXGVCDQSFGIHVAELANFPKHVIETAKEKALQ 795 Query: 838 TFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMS 886 E + N D + + K K + F+ ++K L L EMS Sbjct: 796 LEEFQFVGNPDDCDDEPTRKRRCKEKEEGEKIIQDFLSRVKALPLTEMS 844 >gi|260944788|ref|XP_002616692.1| hypothetical protein CLUG_03933 [Clavispora lusitaniae ATCC 42720] gi|238850341|gb|EEQ39805.1| hypothetical protein CLUG_03933 [Clavispora lusitaniae ATCC 42720] Length = 333 Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 127/317 (40%), Positives = 191/317 (60%), Gaps = 28/317 (8%) Query: 527 QTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAII 586 Q+ +NL + L D+EN +E E L + ++EQ+ + + S+ + Sbjct: 20 QSWANLQDKRSSCLHDIEN-----------LEKEIINGLRSKVLEQTSLIRHTSRCADFL 68 Query: 587 DISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPND 646 D++ + A+LA+E ++ P S N + GRH +VE L++ + + F ND L+ + Sbjct: 69 DVTSSFAVLAEENDFVAPSFVKSPNLNIVAGRHAVVEAGLRE-NGQMFHPNDTRLNSREN 127 Query: 647 KNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNL 706 +W+++GPNMGGKSTFLRQNA+I I+AQ+GS+VPAS +GIVD++F+RVG+AD+L Sbjct: 128 -----VWVISGPNMGGKSTFLRQNAIIAILAQIGSFVPASKVSMGIVDRIFTRVGAADDL 182 Query: 707 ASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRG 766 S STFMVEMIET++IL AT +S I+DEIGRGT+ +GL+IA+AT+ L + N+CR Sbjct: 183 YSDLSTFMVEMIETSNILKNATPRSLAIVDEIGRGTSGKEGLAIAYATLMSLVKKNKCRT 242 Query: 767 LLATHF-HELTDLSKSLK------RFHNATLQVSDSNE----GIIFLHKVIPGIADHSYG 815 L ATHF E+ DL ++ K RF + E I F + + GI+D SY Sbjct: 243 LFATHFGREIKDLLEADKVDQSSIRFRKTKIVEQKDQETSVPTISFDYALEDGISDRSYA 302 Query: 816 IQVGKLAGLPNTVISRA 832 +V +LAG P+ + A Sbjct: 303 FEVARLAGFPSYALEYA 319 >gi|226506654|ref|NP_001146301.1| DNA mismatch repair protein MSH2 [Zea mays] gi|11386957|sp|Q9XGC9|MSH2_MAIZE RecName: Full=DNA mismatch repair protein MSH2; AltName: Full=MUS1 gi|4775576|emb|CAB42554.1| MUS1 protein [Zea mays] Length = 942 Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 201/685 (29%), Positives = 325/685 (47%), Gaps = 96/685 (14%) Query: 282 EREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDYSIT-GAGGRLFAERIASPLT 339 E+ ++ + +DSAA L I + ++ SL ++ + T G G RL + PL Sbjct: 288 EKYNLNCYMRLDSAAVRALNIAEGKTDVNKNFSLFGLMNRTCTVGMGKRLLNRWLKQPLL 347 Query: 340 DSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRD--- 396 D +IN RLD + F+++P L +++ LK D+ R L+ + + + Sbjct: 348 DVNEINNRLDMVQAFVEDPELRQGLRQQLKRISDIDRLTHSLRKKSANLQPVVKLYQSCS 407 Query: 397 ------GIRSGIN------ILNLFLKNDLPEELRGAVEKLKKLPQSLEKT--LSSMLSDD 442 GI N I + FL+ P E A + + +E L+ + + + Sbjct: 408 RIPYIKGILQQYNGQFSTLIRSKFLE---PLEEWMAKNRFGRFSSLVETAIDLAQLENGE 464 Query: 443 L---PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHN 496 P + D G L+D + S+ E I +L + A + + K LK++ Sbjct: 465 YRISPLYSSDLGVLKD--ELSVVENH---------INNLHVDTASDLDLSVDKQLKLE-K 512 Query: 497 NNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALL 556 +LG+ ++ ++K L ++ +T + +FT +L +L ++ AL Sbjct: 513 GSLGHVFRMSKKEEQKVRKKLTGS--YLIIETRKDGVKFTNSKLKNLSDQY-----QALF 565 Query: 557 IELESFE--ILSNAIIEQ---SESLDNASQVIAIIDISIALAILAKEQN--YCRPIIDNS 609 E S + ++ + + SE +N + V++ +D+ + A LA Y RP I S Sbjct: 566 GEYTSCQKKVVGDVVRVSGTFSEVFENFAAVLSELDVLQSFADLATSCPVPYVRPDITAS 625 Query: 610 --TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLW--LLTGPNMGGKST 665 + ++ RHP +E Q FI NDC L GK W ++TGPNMGGKST Sbjct: 626 DEGDIVLLGSRHPCLEA----QDGVNFIPNDCTLV------RGKSWFQIITGPNMGGKST 675 Query: 666 FLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILN 725 F+RQ + V+MAQ+GS+VP A I + D +F+RVG+ D G STFM EM+ETASIL Sbjct: 676 FIRQVGVNVLMAQVGSFVPCDQASISVRDCIFARVGAGDCQLHGVSTFMQEMLETASILK 735 Query: 726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLS--KSLK 783 A+++S +I+DE+GRGT+T DG +AWA E+L E R L ATHFHELT L+ + Sbjct: 736 GASDKSLIIIDELGRGTSTYDGFGLAWAICEHLMEVTRAPTLFATHFHELTALAHRNDDE 795 Query: 784 RFHNATLQVSDSNEG---------IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYD 834 H + + V++ + G + L+KV PG D S+GI V + A P V++ A Sbjct: 796 HQHISDIGVANYHVGAHIDPLSRKLTMLYKVEPGACDQSFGIHVAEFANFPEAVVALAKS 855 Query: 835 ILKTFEKL-----YHHNQKD------MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLD 883 E + + KD R++ P+ T+ + +LF+E+ L +D Sbjct: 856 KAAELEDFSTTPTFSDDLKDEVGSKRKRVFSPDDITRGAARA-----RLFLEEFAALPMD 910 Query: 884 EMSPLTALKTLYAVKAWTLEKYSTD 908 EM L+ +KA L+K + D Sbjct: 911 EMDGSKILEMATKMKA-DLQKDAAD 934 >gi|308808672|ref|XP_003081646.1| Mismatch repair ATPase MSH4 (MutS family) (ISS) [Ostreococcus tauri] gi|116060111|emb|CAL56170.1| Mismatch repair ATPase MSH4 (MutS family) (ISS) [Ostreococcus tauri] Length = 913 Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 174/618 (28%), Positives = 281/618 (45%), Gaps = 70/618 (11%) Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI-LKSSPDVPRSLSRL 381 T G RL + + PL D +I R D ++ F+ + + + ++ L+S PD+ R +L Sbjct: 305 TPMGRRLLSRWLKQPLVDVGEIAQRHDVVHEFVNSAEVRDALRSAHLRSLPDIERITRKL 364 Query: 382 KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD 441 + R +++L L E L++ + + +D Sbjct: 365 E----------------RRKATLMDLCRLYQASAALPHMAEALERCEGRFADFIRTKYAD 408 Query: 442 DLPTFK------RDGGFLRDGAD-----------ASLD-ETRSLRDQSKRIIASLQLKYA 483 +L F R G L D AS D E L+ Q + ++ +A Sbjct: 409 ELKKFSDPSHLGRFEGLLEAAVDLSKIPDEYVICASYDAELGELQKQKDVLEEDIRSAFA 468 Query: 484 EETKI------KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTT 537 + +K K LK++HNN G+F+ +T + ++K L + + + + T+FT Sbjct: 469 DASKDLGMERDKQLKLEHNNMHGWFMRLTKKDETSVRKKLSVSYQIL--EAKKDGTKFTN 526 Query: 538 LELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAK 597 +L L + S + E + + SE N S + A ID+ ++ A +A Sbjct: 527 KKLRALSEQRVALDRSYEAKQRHLVERVVDVAASFSEVFLNVSAMAAEIDVLVSFAEVAV 586 Query: 598 EQN--YCRPIID--NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLW 653 + RPI+ +S +++ RHP VE Q + FIAN C + G+ W Sbjct: 587 SAPVPFVRPIMQEKSSDTIHLENCRHPNVEA----QDNVRFIANTCSM------KKGESW 636 Query: 654 --LLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRS 711 ++TGPNMGGKSTF+RQ + V++AQ+GS+VP A I + D +F+RVG+ D G S Sbjct: 637 FQIITGPNMGGKSTFIRQVGVCVLLAQIGSFVPCDEATIAVRDAIFARVGAGDCQLRGIS 696 Query: 712 TFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATH 771 TFM EM+ETA+IL AT S VI+DE+GRGT+T DG +AWA E++ + + ATH Sbjct: 697 TFMAEMLETAAILKAATPSSLVIIDELGRGTSTYDGFGLAWAISEHIVNEIQAPCMFATH 756 Query: 772 FHELTDL--SKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVI 829 FHELT L + + FH L + ++ + L+++ PG D S+GI + A P V+ Sbjct: 757 FHELTALKGASGVANFHVEAL-IDQASRKLTMLYQIKPGACDQSFGIHCAEFARFPEEVL 815 Query: 830 SRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKND--------KLFVEKIKCLN 881 A + E + E K + +D + F+ + Sbjct: 816 KVARQKAEELEDFSKEGAERAVADVSEPNAKRQRGEEVSDDMARGVIRARQFLSDFAAVP 875 Query: 882 LDEMSPLTALKTLYAVKA 899 L+ MSP A+ +KA Sbjct: 876 LERMSPAEAVARARQLKA 893 >gi|116180884|ref|XP_001220291.1| hypothetical protein CHGG_01070 [Chaetomium globosum CBS 148.51] gi|121791328|sp|Q2HFD4|MSH3_CHAGB RecName: Full=DNA mismatch repair protein MSH3; AltName: Full=MutS protein homolog 3 gi|88185367|gb|EAQ92835.1| hypothetical protein CHGG_01070 [Chaetomium globosum CBS 148.51] Length = 1156 Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 231/905 (25%), Positives = 401/905 (44%), Gaps = 133/905 (14%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGK------HLGK 79 TPM Q+++IK + D+++ +G + F +DA +A++ L I GK H+ + Sbjct: 229 TPMEIQFLDIKRKHMDTVLVVEVGYKFRFFGEDARIAAKELSIVCIP-GKFRYDEPHIDR 287 Query: 80 DIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSL-VRRNVVRLVTPGT 138 +PVH + ++++L+ GH++ + Q+E+ K N++ R + + T GT Sbjct: 288 -FASASIPVHRLSVHVKRLVAAGHKVGVVRQLETAALKKAGDNRNAPFVRKLTNIYTKGT 346 Query: 139 LTED--QLLSPTDSN------YLMAVARIRTEWAIAWIDISTGIFKISTSNHDRLISD-- 188 ++ +L P + YL+ + + ++ G+ + + D + D Sbjct: 347 YIDETGELDQPGEGAGASAGGYLLCLTESPVKGLGTDENVHIGVMAVQPATGDIIYDDFE 406 Query: 189 -----------IMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISE--- 234 ++ I P E++ ELS A K + ++A + NVF D S E Sbjct: 407 DGFMRREIETRLLHISPCELLVV-GELSKATNK----LVQHLAGSSTNVFGDRSRVERVP 461 Query: 235 ----------SRIADYY----------NITTVDTFGSFSQVEKTAAAAAISYIKKTQMVN 274 S + +Y + + +D + +A I+++ + + + Sbjct: 462 KSKTMAAEASSHVTQFYAGKVKGDDERSASLLDKVLKLPESVTVCLSAMITHLTEYGLEH 521 Query: 275 KPTI-GYPEREDIQSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSITGAGGRLFAE 332 + Y + + + I+ +LE+ R + E+ SLL +D + T G RL + Sbjct: 522 IFDLTKYFQSFTTRQHMLINGTTLESLEVYRNATDQSEKGSLLWALDKTRTRPGRRLLRK 581 Query: 333 RIASPLTDSTKINTRLDSINFFI--QNPILINPIQKILKS-SPDVPRSLSRLKIGRG-EP 388 I PL D ++ R+ ++ + Q+ ++ + +L S D+ RSL R+ G+ P Sbjct: 582 WIGRPLLDRERLEERVTAVEELLEHQSNFKVDRLGGVLNSIKADLERSLIRIYYGKCTRP 641 Query: 389 KDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSML--------- 439 + ++ ++ R I + D VE + LP + +S+ L Sbjct: 642 ELLSTLQTLQRISIEFSRVKTPEDTGFNSSLIVEAIYALP-GIGTIVSAYLDKINPEAAR 700 Query: 440 SDDLPTFKRDGGFLRD---------GADASLDETRSLRDQSKRIIASLQLKYAEETKIKN 490 DD TF RD D +A LD R +D + ++ + Y + I+ Sbjct: 701 KDDKYTFFRDDEETEDITNHKLGIAAVEADLDVHR--KDAATKLSKKTPVTYVTVSGIEY 758 Query: 491 LKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNA 550 L N +L + V +S A + L+RF T E++ L N Sbjct: 759 LIEVPNTDLKH---VPASWAKI--------------SGTKKLSRFHTPEVMRLMNERDQH 801 Query: 551 TNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII---D 607 + +F L +I + + L +A +A +D ++LA +A Y +P Sbjct: 802 KEALAAACDNAFTDLLKSIASEYQPLRDAVASLATLDCLLSLAQVASLPGYSKPTFLPTA 861 Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667 + GRHPI E TL +I L+ P S L+TGPNMGGKS+++ Sbjct: 862 TPPTISITSGRHPIAEHTLPDG----YIPFTTSLASP----SPLAQLITGPNMGGKSSYV 913 Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727 R AL+V++AQ+GSYVPA + + D +++R+G+ DNL +G STFMVE+ ETA+IL A Sbjct: 914 RAVALLVLLAQIGSYVPAEAMSLTLTDAIYTRMGARDNLFAGESTFMVEVSETAAILRGA 973 Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLK---- 783 T +S V+LDE+GRGT+T DG +IA A + ++ RC L TH+ L ++ L Sbjct: 974 TARSLVVLDELGRGTSTHDGAAIAHAVLAHVARETRCLTLFITHYQNLARVADGLGGAVR 1033 Query: 784 ----RFHNATLQ------------VSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNT 827 RF Q +D++E I FL++V G+A SYG+ V +LA +P Sbjct: 1034 CVHMRFEATGRQRDEAADGDADAAAADADEEITFLYEVADGVAHRSYGLNVARLARIPRR 1093 Query: 828 VISRA 832 V+ A Sbjct: 1094 VLDVA 1098 >gi|213405331|ref|XP_002173437.1| DNA mismatch repair protein msh2 [Schizosaccharomyces japonicus yFS275] gi|212001484|gb|EEB07144.1| DNA mismatch repair protein msh2 [Schizosaccharomyces japonicus yFS275] Length = 995 Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 170/618 (27%), Positives = 284/618 (45%), Gaps = 91/618 (14%) Query: 285 DIQSTLFIDSAARSNLEILRTLSGS--REQSLLKTIDYSITGAGGRLFAERIASPLTDST 342 +++ + +D A + L + G+ + SL +++ T G R ++ PL D+ Sbjct: 313 NLEHYMRLDVPAVAALNLFPAAGGNNNKSMSLFGLLNHCRTAMGMRQLRRWLSQPLLDAD 372 Query: 343 KINTRLDSINFFIQNP---ILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIR 399 INTRLD + F+++ L+ ++L+ PDVPR RL G +D+ + Sbjct: 373 AINTRLDLVEAFVEDAEVRQLLMDDDRLLRCIPDVPRLSRRLIRGTASLEDVVRVYQMAL 432 Query: 400 SGINILNLFLKNDLP----------EELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRD 449 + +++ ++ P + + G L KL + + T+ DL Sbjct: 433 ALPYFVDVLKESSSPKKDLLNQLYTQRIEGYAGDLAKLIELVNTTI------DLKALDAH 486 Query: 450 GGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEVT 506 ++ D L E R D+ +R I + ++ + K L ++H++ G+ + +T Sbjct: 487 RYVIKAEFDEELMELRQQLDELRRSIYKEHERAGDDLGLDTEKKLHLEHHHIYGWCLRLT 546 Query: 507 SSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILS 566 + A L+ R+ T N FTT L T+ S + L+ Sbjct: 547 RTEAGCLRG---KGSRYTELATQKNGVYFTTSRLHGFNTTYTDLHRSYTYHQ----NGLA 599 Query: 567 NAIIEQSES----LDNASQVIAIID--ISIALAILAKEQNYCRPIID------------- 607 +++ + + L++ ++A +D +S A A Y RP + Sbjct: 600 REVVKIAATYYAPLEDVGNLLAHLDVIVSFAHASTIAPIPYVRPNVHCDVTAASVADAAS 659 Query: 608 -------------NSTNF-----------------IVKDGRHPIVEKTLKQQSSKPFIAN 637 + T F ++K RHP +E Q FI N Sbjct: 660 IEENEEGVPDSTISETKFQSVPFRKILSRTPCTKLVLKASRHPCLEV----QDDVNFIPN 715 Query: 638 DCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLF 697 D L + +L ++TGPNMGGKST++RQ +IV+MAQ+G +VP A + IVD + Sbjct: 716 DVRL----EHGKRQLLIITGPNMGGKSTYIRQVGVIVVMAQIGCFVPCESADLDIVDSVL 771 Query: 698 SRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEY 757 +RVG+ D+ G STFM EM+ETA+IL A+ +S +I+DE+GRGT+T DG +AWA EY Sbjct: 772 ARVGAGDSQLKGVSTFMAEMLETATILRSASPRSLIIVDELGRGTSTTDGFGLAWAIAEY 831 Query: 758 LHETNRCRGLLATHFHELTDLSKS---LKRFHNATLQVSDSNEGIIFLHKVIPGIADHSY 814 + + C L ATHFHELT ++++ ++ H L D+ + I FL++V G +D S+ Sbjct: 832 IVKRIDCFCLFATHFHELTKMAETTPVVQNLHVTALVSEDNTKDISFLYQVCNGASDRSF 891 Query: 815 GIQVGKLAGLPNTVISRA 832 GI V +LA P +I A Sbjct: 892 GIHVAELAQFPQKIIQMA 909 >gi|221130629|ref|XP_002154213.1| PREDICTED: similar to predicted protein, partial [Hydra magnipapillata] Length = 558 Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 136/372 (36%), Positives = 203/372 (54%), Gaps = 30/372 (8%) Query: 489 KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRIT 548 K +K++ N+ +G+F VT VL+ S +F +T + RFT L +L N Sbjct: 132 KTIKLESNSQIGHFFRVTLKEEKVLR----SCKKFTTIETRKDGVRFTNSTLSELSN--A 185 Query: 549 NATNSALLIELESFEILSNAIIE----QSESLDNASQVIAIIDISIALAILAKEQN--YC 602 T A EL++ L+N +I+ ++ ++ S ++A +D+ ++ +++A + + Sbjct: 186 YRTQKASYNELQT--QLANEVIKIASGYADPMNVLSDLVAHLDVLLSFSLVASQAPIPFV 243 Query: 603 RPIID--NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 RP + S I+ RHP +E Q FIAND L K + ++TGPNM Sbjct: 244 RPKVYPLGSDKIILIGSRHPCME----VQDDISFIANDVKLV----KEEAEFLVITGPNM 295 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GGKST++RQ + ++MAQ+GS+VP A I IV + +RVG+ D+ G STFM EM+ET Sbjct: 296 GGKSTYIRQINIYILMAQIGSFVPCDQAEISIVKSIMARVGAGDSQMKGVSTFMSEMLET 355 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLS- 779 ASILN A S +I+DE+GRGT+T DG +AWA EY+ L ATHFHELT L+ Sbjct: 356 ASILNAADKNSLIIIDELGRGTSTYDGFGLAWAISEYIATKINAFCLFATHFHELTTLAD 415 Query: 780 --KSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILK 837 ++K FH L SD + L++V PG+ D S+GI V ++A P VI A K Sbjct: 416 EISTVKNFHVTALTTSDR---LTLLYRVKPGVCDQSFGIHVAEIADFPKHVIEFAKQKAK 472 Query: 838 TFEKLYHHNQKD 849 E + + D Sbjct: 473 ELEDFHVYRNGD 484 >gi|307192503|gb|EFN75691.1| DNA mismatch repair protein Msh2 [Harpegnathos saltator] Length = 857 Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 166/567 (29%), Positives = 267/567 (47%), Gaps = 44/567 (7%) Query: 290 LFIDSAARSNLEI------LRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTK 343 L +DSAA L I L G+ S+L +D T G RL A+ + PL D + Sbjct: 231 LRLDSAAIKALNIEPRVDSASNLHGNPVASILTLLDKCRTAQGHRLIAQWVRQPLRDLSL 290 Query: 344 INTRLDSINFFIQNPILINPI-QKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGI 402 I R D + ++N L + + + L+ PD+ + +L + +D I + Sbjct: 291 IKERHDIVELLVKNNELRSALCEDYLRRIPDLQQLAKKLARKKSALQDCYKIYLCVSYLP 350 Query: 403 NILNLF--------LKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLR 454 +L LK + + L+ +E + K Q +E+T+ DL ++ + Sbjct: 351 KLLEQLAPEANLAALKAIIIDPLKELIEDMDKFQQLVEQTI------DLDAAEKGDFMIN 404 Query: 455 DGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEVTSSSAS 511 G + D+ + II K A++ + K +K++ N GY+ +T Sbjct: 405 SGFTDDFKALKDTMDEMEEIIQQQLSKVADDLLLEAGKAIKLESNQQFGYYFRITLKEEK 464 Query: 512 VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIE 571 VL+ +K + + RF +L +L + A N + + + + Sbjct: 465 VLR----NKKHYNILDSNKTGVRFRNSKLSELNDDFIAARNKYMDKQKDVIAEIMGIAAG 520 Query: 572 QSESLDNASQVIAIIDISIALAILAKEQN--YCRPII----DNSTNFIVKDGRHPIVEKT 625 SE++ V+A +D+ A A A N Y RP + + N + RHP +E Sbjct: 521 YSETVRAIGSVLACLDVLTAFASAAVSANKVYVRPDMVPSEEGELNLV--QIRHPCLE-- 576 Query: 626 LKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPA 685 Q +IAND + ++ ++TGPNMGGKST++R + +MA +GS+VP Sbjct: 577 --MQQGIDYIANDVNFK----RDQCHFRIITGPNMGGKSTYIRSVGVTALMAHIGSFVPC 630 Query: 686 SYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATL 745 A I ++D + +RVG+ D+ G STFM+EMIETA+IL AT S VI+DE+GRGT+T Sbjct: 631 DKATISLLDCILARVGADDSQLKGLSTFMMEMIETAAILKTATCNSLVIIDELGRGTSTY 690 Query: 746 DGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKV 805 +G IAW+ E+L + + L ATHFHE+T L++ + N + N + L+KV Sbjct: 691 EGCGIAWSIAEHLAKDIKSYCLFATHFHEITKLAEEISTVKNEHVTALVENNKLTLLYKV 750 Query: 806 IPGIADHSYGIQVGKLAGLPNTVISRA 832 GI D S+G+ V K+A P VI A Sbjct: 751 KSGICDQSFGLHVAKMANFPQDVIEFA 777 >gi|330930898|ref|XP_003303190.1| hypothetical protein PTT_15308 [Pyrenophora teres f. teres 0-1] gi|311320956|gb|EFQ88715.1| hypothetical protein PTT_15308 [Pyrenophora teres f. teres 0-1] Length = 929 Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 176/595 (29%), Positives = 287/595 (48%), Gaps = 69/595 (11%) Query: 283 REDIQSTLFIDSAARSNLEIL-RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDS 341 + D+ + +D+AA L ++ G++ SL +++ T G RL A+ + PL + Sbjct: 279 QHDLSQYMKLDAAALKALNLMPGPRDGAKNMSLYGLLNHCKTPTGSRLLAQWLKQPLMNV 338 Query: 342 TKINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIA-----VIR 395 +I R + F+ + L +Q+ L+S PD+ R + + +D+ VIR Sbjct: 339 EEIERRQQLVEAFVNDTELRQTMQEEHLRSIPDLYRLAKKFQRKAANLEDVVRAYQVVIR 398 Query: 396 -DGIRSGIN-ILNLFLKNDLPEE----LRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRD 449 G S + +++ K L E LR L +E T+ DL Sbjct: 399 LPGFLSSLEAVIDEQYKEPLDAEYTDKLRQYTAAFAGLQDMVETTV------DLEALDNH 452 Query: 450 GGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEVT 506 ++ D SL R D+ KR + S ++ ++ K L ++++ G+ +T Sbjct: 453 EFIIKPEFDESLKVIRKRLDKLKREMESEHMRVGDDLNQDTEKKLFLENHKVNGWCFRLT 512 Query: 507 SSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL------IDLENRITNATNSALLIELE 560 + A +++ K ++ T N FTT L D + N T S L+ E+ Sbjct: 513 RNEAGCIRQ----KKQYQEISTQKNGVYFTTNTLQEKRREFDQLSENYNRTQSGLVNEVV 568 Query: 561 SFEILSNAIIEQSESLDNASQVIAIIDISIALAILA--KEQNYCRPIID--NSTNFIVKD 616 S ++++ + E L + V+A +D+ +A A ++ +Y RP + + N ++K+ Sbjct: 569 S---VASSYVPVVEKL---AAVLAHLDVIVAFAHVSVHAPTSYTRPTMHPRGTGNTVLKE 622 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 RHP +E Q FI ND L +N + ++TGPNMGGKST++RQ +I +M Sbjct: 623 ARHPCME----MQDDISFITNDVSLI----RNESEFLIITGPNMGGKSTYIRQIGVIALM 674 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+G +VP S A + I D + +RVG++D+ G STFM EM+ETA+IL AT +S +I+D Sbjct: 675 AQIGCFVPCSEAELTIFDCILARVGASDSQIKGVSTFMAEMLETANILKSATKESLIIID 734 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHN--ATLQVSD 794 E+GRGT+T DG +AWA EY+ + L ATHFHELT L + + N +S+ Sbjct: 735 ELGRGTSTYDGFGLAWAISEYIVKEIGAFALFATHFHELTALVDTYPQVQNLHVVAHISE 794 Query: 795 SN-----------------EGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 N + L+KV PG +D S+GI V +L P VI+ A Sbjct: 795 GNTPANEDGDVDMDAVEKKREVTLLYKVEPGFSDQSFGIHVAELVRFPQKVINMA 849 >gi|149240223|ref|XP_001525987.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] gi|190359845|sp|A5DYV8|MSH3_LODEL RecName: Full=DNA mismatch repair protein MSH3; AltName: Full=MutS protein homolog 3 gi|146450110|gb|EDK44366.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] Length = 993 Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 231/925 (24%), Positives = 412/925 (44%), Gaps = 157/925 (16%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ Q +++ S +PD ++ ++G Y+++ +DA +RCL I C Sbjct: 100 TPLESQILQLLSEHPDKILLIQVGYKYKVYGEDARHVARCLNIMFISSST--DPTFSYCS 157 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPL--EAKKRGNKS-LVRRNVVRLVTPGTLTED 142 P + + +Q+++ G ++ + +Q+ES + E K G L++R + + T GT D Sbjct: 158 FPENRLHINLQRILNTGVKVGVVKQMESAIIKEVDKIGKSGDLMKRELTGVYTRGTYMND 217 Query: 143 QLL-----SPTDS--NYLMAVARI-RTEWAIAWIDISTG--IFKISTSN--HDRLISDIM 190 + + SP Y++ V I R ++AI I TG I+ T + HD L + ++ Sbjct: 218 EFIDSGVNSPEQEELGYIVCVNEISRYQFAIVAIQPLTGEIIYDDFTDDVSHDELETRLL 277 Query: 191 RIDPREIIF--------SEKELSHAEYKSLFETLGNVAVAQPNV--------FFDHSISE 234 + P E++ + +++ S G A AQ +H+I Sbjct: 278 YLRPSEVLLLGCGGNESNNNNNNNSNNSSNNNDNGTDADAQNQTSTLQCFQKLVNHNIKI 337 Query: 235 SR-------IADYYNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPT-IGYPEREDI 286 R + N ++ + + + + + Y+++ + N T I + D Sbjct: 338 ERKPKGLNNLKAVLNAAALNFYRELLEPVQVCVSELVKYLEEFNLSNIFTVIENVSKFDS 397 Query: 287 QSTLFIDSAARSNLEILRTLSGSREQ-SLLKTIDYSITGAGGRLFAERIASPLTDSTKIN 345 + T+ + ++ +LEI + S + +L ++++ T G RL ++ PL D KI Sbjct: 398 KKTMILPASTMLSLEIFQNSENSTTKGTLFSLLNHTKTPFGMRLLESWVSHPLIDKDKIE 457 Query: 346 TRLDSINFFIQ----NPILINPIQKILKS-----------SPDVPRSLSRLKIGRGEPKD 390 R ++ N L +QKI K+ RSL+ KI R KD Sbjct: 458 ERYQAVEDLSTGSHFNDCLSRLLQKIGKNLDLESIAIKIHYSTTTRSLAT-KINR---KD 513 Query: 391 IAVIRDGIRSGINILNLFLK----NDLPEELRGAVEKLKKLP------------------ 428 I ++ +S + ++ F K ++L L+ ++ L +L Sbjct: 514 IFMMLLMYQSALQFVSQFEKTIKASNLSPLLKRVLDNLLQLANTDTVDRFMDMINPSYLL 573 Query: 429 ---QSLEKTLSSMLSDDLPTFKRDGGFLRDGAD-ASLDETRSLRDQS----KRIIASLQL 480 Q+L ++ S + F + GF + A + + L ++ K+++ QL Sbjct: 574 GEQQNLHQSSRSTREQKVKFFNLNNGFEEINRELAEIMNVKMLLEEELVKVKKLLQRPQL 633 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKD-RFIHRQTMSNLTRFTTLE 539 Y +N Y IEV + A +ES FI + ++RF + E Sbjct: 634 NYVT-----------SNGEPYLIEVRNGKA------VESLPIDFIKINGTTTVSRFRSKE 676 Query: 540 LIDL-------ENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIAL 592 + L E + N + E+F N + ++ +A++D ++L Sbjct: 677 IAHLYKMKQYHEEVLNNRCD-------EAFNTFLNELDSHYGFFQGITKNLAVLDCLLSL 729 Query: 593 AILAKEQN--YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSG 650 A ++ + + +P + + VK+ RHPI+E ++AND D+ +S Sbjct: 730 AAVSNSNSNTHVKPNLSDELIIDVKNARHPIIEHL-----RDGYVANDIDIR----YDSN 780 Query: 651 KLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGR 710 ++ ++TGPNMGGKS++++ AL++IM Q+G Y+P A IGI D + R+G++DNL GR Sbjct: 781 RVLVITGPNMGGKSSYVKMVALLIIMTQIGCYIPCEAATIGIFDSILIRMGASDNLLKGR 840 Query: 711 STFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETN-RCRGLLA 769 STFM EM+E ++I+ + T +S VILDEIGRGT ++DG S+A+A + YL E+ + L Sbjct: 841 STFMTEMLECSNIIQKLTPRSLVILDEIGRGTGSIDGYSLAYAILRYLVESKLKPIVLCI 900 Query: 770 THFHELT---------------------DLSKSLKRFHNATLQVSDSNEGIIFLHKVIPG 808 TH+ L D+ KS + Q I+FL+ + PG Sbjct: 901 THYTGLLSETEDEKFDKDAKDENLDTGDDVVKSYYMGYEEITQPGQVFPEIVFLYNLCPG 960 Query: 809 IADHSYGIQVGKLAGLPNTVISRAY 833 +++ SYG+QV K+AGLP V+ AY Sbjct: 961 VSN-SYGLQVAKMAGLPKKVLLEAY 984 >gi|257487046|ref|ZP_05641087.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 408 Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 128/380 (33%), Positives = 204/380 (53%), Gaps = 13/380 (3%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L S TPMM+QY ++K+ + D L+FYRMGDFYE+F++DA A++ L ITLT RG+ G+ Sbjct: 7 DLSSHTPMMQQYWKLKNQHLDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQS 66 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPMCG+P H A Y+ KL+K+G + ICEQI P + K V R VVR++TPGT++ Sbjct: 67 IPMCGIPYHAAEGYLAKLVKLGESVVICEQIGDPATS-----KGPVDRQVVRIITPGTIS 121 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKI-STSNHDRLISDIMRIDPREIIF 199 ++ LL N + AV + +A +DI++G F + + L++++ RI+P E++ Sbjct: 122 DEALLDERRDNLIAAVLGDERLFGLAVLDITSGNFSVLEIKGWENLLAELERINPVELLI 181 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFSQVEKTA 259 + + L A + F+ + + ++ + FG + Sbjct: 182 PDD-----WPQGLPAEKRRGARRRAPWDFERDSAHKSLCQQFSTQDLKGFGCENLTLAIG 236 Query: 260 AAAA-ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTI 318 AA +SY K+TQ P + E + T+ +D+A+R NLE+ LSG R+ +L + Sbjct: 237 AAGCLLSYAKETQRTALPHLRSLRHERLDDTVILDAASRRNLELDTNLSGGRDNTLQSVM 296 Query: 319 DYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSL 378 D T G RL + PL D T + R SI F++ N +Q LK D+ R L Sbjct: 297 DRCQTAMGTRLLTRWLNRPLRDLTILQARQTSITCFLERYRFEN-LQPQLKEIGDIERIL 355 Query: 379 SRLKIGRGEPKDIAVIRDGI 398 +R+ + P+D+A +RD + Sbjct: 356 ARIGLRNARPRDLARLRDAL 375 >gi|328870366|gb|EGG18740.1| mutS like protein [Dictyostelium fasciculatum] Length = 923 Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 173/621 (27%), Positives = 301/621 (48%), Gaps = 70/621 (11%) Query: 292 IDSAARSNLEILRTLSGSRE-QSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDS 350 +D+A L I+ + +++ S+ +D T G R ++ + PL D +I TRL+ Sbjct: 323 LDAATFKGLNIISSDPTNKQGMSIFNLLDKCNTPMGSRKLSQWVRQPLVDQEEIETRLNF 382 Query: 351 INFFIQNPILINPIQ-KILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNL-- 407 + F+ L ++ LK D+ R +L G+ +D+ + ++ +L+ Sbjct: 383 VEIFVNALELRQALRSNDLKKIGDLERLSKKLVGGKATLEDVVNLYGVVQRLSVLLSSLR 442 Query: 408 --------FLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADA 459 +++ + L + + ++ +EKT+ D ++ +R Sbjct: 443 SYEDQGSEMVESTFTQPLEQIIAEFQQFSAMVEKTV-----DLDQAYETHEYVIRSSFSD 497 Query: 460 SLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIK--HNNNLGYFIEVTSSSASVLKKDL 517 L E + + + I L+ K A++ I ++K ++ GY + ++ +++ + Sbjct: 498 ELSEIHNKKQNCMKKINQLREKIADDLGIDEARVKLHQSDKDGYLVRLSRKDEKLIRGNA 557 Query: 518 ESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSES-- 575 ++I T + RF+T ++ ++ A S+ + E + L +E + S Sbjct: 558 ----KYIVYGTQKDGVRFSTSDI----RKLNEAYMSSSVQYNEKQQGLVQRALEITTSFV 609 Query: 576 --LDNASQVIAIIDISIALAILAKE--QNYCRPIID--NSTNFIVKDGRHPIVEKTLKQQ 629 +D+ +IA +D+ +L ++ Y RPI+ N + GRHP VE Q Sbjct: 610 PLIDDLCSLIATLDVFASLGHVSSSAPSPYVRPIVHPMGKGNITIVGGRHPCVEV----Q 665 Query: 630 SSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAH 689 + FI+ND DL+ ++ ++TGPNMGGKSTF+RQ +I +MAQ+G +VPA A Sbjct: 666 DNVNFISNDIDLT----RDKSTFQIITGPNMGGKSTFIRQVGIITLMAQIGCFVPAEQAE 721 Query: 690 IGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLS 749 I IVD + +R+G+ D+ G STFM EM+ETA IL AT S +I+DE+GRGT+T DG Sbjct: 722 ISIVDCILTRIGAGDSQLRGVSTFMAEMLETAYILKTATKNSLIIIDELGRGTSTYDGFG 781 Query: 750 IAWATIEYLHETNRCRGLLATHFHELTDLSK----SLKRFHNATLQVSDSNEGIIFLHKV 805 +AW EY+ L ATHFHELT L + ++K H V+D + G+ ++KV Sbjct: 782 LAWGIAEYICHQIGAFCLFATHFHELTVLQEILPLTVKNLH-VQANVND-HSGLTLMYKV 839 Query: 806 IPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNN 865 G D S+GI V +AG P+ V+ A RL E+++ ES N+ Sbjct: 840 KEGACDQSFGIHVAIMAGFPDQVVQVA------------------RLKAKELESFES-NS 880 Query: 866 LSKNDKL--FVEKIKCLNLDE 884 L+ D + F++ K L++ + Sbjct: 881 LASLDSVSQFIQDFKSLDMQQ 901 >gi|322785419|gb|EFZ12092.1| hypothetical protein SINV_12798 [Solenopsis invicta] Length = 895 Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 182/636 (28%), Positives = 295/636 (46%), Gaps = 69/636 (10%) Query: 292 IDSAARSNLEI------LRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKIN 345 +DSAA L I + L G+ S+L +D T G RL A+ + PL D + I Sbjct: 271 LDSAAIRALNIEPQADAISNLHGNPVSSILTLLDKCRTAQGHRLIAQWVRQPLRDLSLIK 330 Query: 346 TRLDSINFFIQNPILINPIQKIL-----KSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRS 400 R D + +QN N ++ IL K PD+ + +L + +D I + Sbjct: 331 ERHDIVELLVQN----NELRSILSDDYLKRIPDLQQLAKKLARKKSVLQDCYKIYLCVSY 386 Query: 401 GINILNLF--------LKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGF 452 +L LK + + L+ V + K Q +E+T+ + + + F + GF Sbjct: 387 LPKLLEQLSQEENVTALKTMIIDPLKELVNDMDKFQQLVEQTID-LDAAEKGEFMVNPGF 445 Query: 453 ---LRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSS 509 L+ DA + +++ Q + L L+ K +K+++N GY+ +T Sbjct: 446 ADDLKVLKDAMTETEETIQQQLNKAANDLCLEAG-----KVIKLENNQQFGYYFRITLKE 500 Query: 510 ASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAI 569 +L+ +K + + RF L +L + T+A N + + + + Sbjct: 501 EKILR----NKKHYTILDSNKAGIRFRNNRLNELNDDFTDARNKYMERQKDVITEIVGIA 556 Query: 570 IEQSESLDNASQVIAIIDI--SIALAILAKEQNYCRPIIDNSTN--FIVKDGRHPIVEKT 625 S ++ V+A D+ S A A ++ + Y RP + +S + RHP +E Sbjct: 557 AGYSGTVRAIGDVLACFDVLTSFASAAISANKMYVRPKMVSSEEGELNLTQVRHPCLE-- 614 Query: 626 LKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPA 685 Q +IAND D ++ + ++TGPNMGGKST++R + +MA +GS+VP Sbjct: 615 --MQQGVDYIANDIDFK----RDQYRFCIITGPNMGGKSTYIRSVGVAALMAHIGSFVPC 668 Query: 686 SYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATL 745 A I ++D + +RVG+ D+ G STFM+EMIE A+IL AT S VI+DE+GRGT+T Sbjct: 669 DKATISLLDCILTRVGADDSQLKGLSTFMMEMIEIAAILKTATCNSLVIIDELGRGTSTY 728 Query: 746 DGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKV 805 +G IAW+ E+L + L ATHFHE+T L++ + N + ++ + L++V Sbjct: 729 EGCGIAWSIAEHLARDIKSYCLFATHFHEITKLAEEIPIVKNQHVTALVEDDKLTLLYQV 788 Query: 806 IPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNN 865 PGI D S+G+ V K+A P VI A +K L E E +N Sbjct: 789 KPGICDQSFGLHVAKMANFPLDVIEFA-------------KRKQAELENYEGIAFEGSDN 835 Query: 866 LSKNDKLFVEK--------IKCLNLDEMSPLTALKT 893 K K+ E KC +LD+ P TAL++ Sbjct: 836 PQKKRKIIQEGEILISQFLTKCKDLDQSLPDTALES 871 >gi|298710503|emb|CBJ25567.1| MutS protein homolog 6 [Ectocarpus siliculosus] Length = 1372 Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 188/634 (29%), Positives = 299/634 (47%), Gaps = 108/634 (17%) Query: 287 QSTLFIDSAARSNLEILRTLS-GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKIN 345 QS + +D + SNLE+LR S G + SL ++ T G RL + + PL T IN Sbjct: 715 QSHMVLDGVSLSNLEVLRNSSDGGEKGSLWAFVNRCSTAFGRRLLKDWVLKPLLFPTHIN 774 Query: 346 TRLDSINFFIQNPILINP----IQKILKSSPDVPRSLSRLKI------GRGEPKDIAVIR 395 RLD+++ + ++P + +LK PDV R LSR+ P+ A++ Sbjct: 775 GRLDAVSELAGD---LSPEADASRALLKKLPDVERLLSRVHSMASKHRSSEHPESRAIMY 831 Query: 396 DGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ-----SLEKTL--------------- 435 + + I +N FL + +EK +LP+ S+E L Sbjct: 832 EDTKYSIRKVNDFL------SVLDGLEKADRLPEIFKSASVESALLRKCVISKSEGGQFP 885 Query: 436 --SSMLSD-----DLPTFKRDGGF-LRDGADASLDETRS--------------------- 466 SS +S D T K+ G L+ G D D+ + Sbjct: 886 DMSSAISYFRNAFDAGTSKKKGLIELKPGVDEDFDKIKPRGRYFVWPVLAQIDIKEIKSE 945 Query: 467 ----LRDQSKRIIASLQLKYAEETKIK-NLKIKHNNNLGYFIEVTSSSASVLKKDLESKD 521 LR+Q KR+ S +Y K K +++ YF + S LK + Sbjct: 946 LDGHLREQRKRLGCS-DAEYWHSAKEKYQIQVPER----YFSKNRQPSDYELKSKKKGAL 1000 Query: 522 RFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQ 581 RF +L +L E R+ +A + F+ E E + + Sbjct: 1001 RFWTPFIKDHLE-----QLAAAEQRLGDAQRDQMRGLFAKFD-------EHRELWASTVR 1048 Query: 582 VIAIIDISIALAILAKEQNYCRPIIDN---STNFI-VKDGRHPIVEKTLKQQSSKPFIAN 637 ++ +D ++LA ++ + + RP + + +FI +K+ RHP + +T + +I N Sbjct: 1049 CLSHLDAVLSLAEVSAQPGFSRPRFHDGASTPSFIRLKNARHPCLAQTYQGGE---YIPN 1105 Query: 638 DCDLSCP------NDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIG 691 D L + + + LLTGPNMGGKST LRQ L+ I+AQ+G +VPA AH+ Sbjct: 1106 DATLGAAPAGISDDAPAAPNMLLLTGPNMGGKSTLLRQTCLVAILAQVGCFVPADEAHLT 1165 Query: 692 IVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIA 751 +D++F+RVG++D + +G+STF +E+ ETA+IL+ AT++S VILDE+GRGT+T DG +IA Sbjct: 1166 PLDRIFTRVGASDRILAGQSTFFLELSETANILHHATSRSLVILDELGRGTSTFDGTAIA 1225 Query: 752 WATIEYLHETNRCRGLLATHFHELTD---LSKSLKRFHNATLQVSDSNEG-IIFLHKVIP 807 A YL ++ +C + ATH+H L + + H + L + E + FL+K+ P Sbjct: 1226 HAVAHYLVKSAKCLAMFATHYHSLVEDWGHHSEVALGHMSCLVEDNGGEQRVTFLYKLAP 1285 Query: 808 GIADHSYGIQVGKLAGLPNTVISRAYDILKTFEK 841 G S+GI V +LA LP+ VIS A + FE+ Sbjct: 1286 GPCPKSFGINVARLAQLPDAVISAAQLKSEEFER 1319 Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 14/127 (11%) Query: 22 LKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDI 81 L TP M Q+ + KS N D+++F+++G FYELF DA + + L + K K Sbjct: 342 LSKETPAMVQWWKFKSQNMDTVLFFKVGKFYELFHVDADVGMQELDLIYMKGEKA----- 396 Query: 82 PMCGVPVHTANHYIQKLIKIGHRIAICEQIESP--LEAK-----KRGNKS-LVRRNVVRL 133 G P + + L+ G+R+A EQ+E+P L+A+ + G K +V+R + + Sbjct: 397 -HSGFPEISYGKFADGLVSKGYRVARVEQVETPDMLKARNASVGRNGTKDKVVKRELCSI 455 Query: 134 VTPGTLT 140 ++ GT T Sbjct: 456 LSRGTRT 462 >gi|318054266|gb|ADV35577.1| truncated DNA mismatch repair protein [Pseudomonas aeruginosa] gi|318054268|gb|ADV35578.1| truncated DNA mismatch repair protein [Pseudomonas aeruginosa] gi|318054270|gb|ADV35579.1| truncated DNA mismatch repair protein [Pseudomonas aeruginosa] gi|318054272|gb|ADV35580.1| truncated DNA mismatch repair protein [Pseudomonas aeruginosa] Length = 425 Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 127/397 (31%), Positives = 209/397 (52%), Gaps = 15/397 (3%) Query: 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKD 80 +L TPMM+QY ++K +PD L+FYRMGDFYELF++DA A++ L ITLT RG+ GK Sbjct: 3 DLSQHTPMMQQYFKLKHQHPDQLMFYRMGDFYELFYEDAKKAAKLLDITLTARGQSGGKA 62 Query: 81 IPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLT 140 IPM G+P H+A Y+ KL+K+G +AICEQI P +K V R VVR++TPGT++ Sbjct: 63 IPMAGIPFHSAEGYLAKLVKLGESVAICEQIGDPAT-----SKGPVERQVVRIITPGTVS 117 Query: 141 EDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKIST-SNHDRLISDIMRIDPREIIF 199 ++ LL N L A+ + +A +DI++G F + + L++++ R++P E++ Sbjct: 118 DEALLDERRDNLLAAILGDERLFGLAVLDITSGRFSVQEIKGWETLLAELERLNPAELLI 177 Query: 200 SEKELSHAEYKSLFETLGNVAVAQPNVF-FDHSISESRIADYYNITTVDTFGSFSQVEKT 258 + ++ V + + FD + + + + FG + Sbjct: 178 PD------DWPQGLPAEKRRGVRRRAPWDFDRDSAHKSLCQQFGTQDLKGFGCQNLTLAI 231 Query: 259 AAAAA-ISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKT 317 AA ++Y K+TQ P + + + T+ +D A+R NLE+ LSG RE +L Sbjct: 232 GAAGCLLAYAKETQRTALPHLRSLRHDRLDDTVILDGASRRNLELDINLSGGRENTLQSV 291 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRS 377 +D T RL + + PL D + R +SI ++ N +Q LK D+ R Sbjct: 292 VDRCQTAMASRLMSRWLNRPLRDRAVLEARQESIACLLERYRFEN-LQPQLKEIGDLERI 350 Query: 378 LSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLP 414 L+R+ + P+D+A +RD + + ++ N + + P Sbjct: 351 LARIGLRNARPRDLARLRDALAALPDLQNAMTELEAP 387 >gi|45188042|ref|NP_984265.1| ADR168Cp [Ashbya gossypii ATCC 10895] gi|74694200|sp|Q759V4|MSH3_ASHGO RecName: Full=DNA mismatch repair protein MSH3; AltName: Full=MutS protein homolog 3 gi|44982859|gb|AAS52089.1| ADR168Cp [Ashbya gossypii ATCC 10895] Length = 1032 Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 215/872 (24%), Positives = 396/872 (45%), Gaps = 94/872 (10%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITL---------TKRGKH 76 T + +Q+ ++K + D ++ R+G Y+ F +DA++ SR L I L T H Sbjct: 141 TELDQQFKDLKLQHMDKVLAVRVGYKYKFFAEDAVMVSRVLQIKLVPGKLTVHETDPADH 200 Query: 77 LGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSLV-RRNVVRLVT 135 K C +P ++Q+L+ ++ + EQ E+ K G S V R V + T Sbjct: 201 KHKKFAYCTIPDTRLEVHLQRLMHHNLKVGVVEQTETSAVKKNSGTSSSVFSREVTNIFT 260 Query: 136 PGTLTEDQLLSPTDSNYLMAVARI----------RTEWAIAWIDISTGIFKISTSNHDRL 185 T ++ D L A + T + + +++++G +R Sbjct: 261 RATYGINETFGTKDRRVLGDSASVWGLVCKRQPSYTRYFLVSVNLNSGEVIFDDFKEERF 320 Query: 186 ISD-----IMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADY 240 +++ I +P E++ + S E + +F T + D +++ + Sbjct: 321 LTEALETRIKYTNPSEVVVGDGLGS--EIEKVFHTSDS----------DITLNRIELVGL 368 Query: 241 YNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPERED---IQSTLFIDSAAR 297 Y + +F A + + T N+ + + E ++ + + S+A Sbjct: 369 YEEIFSEPHPAFKGNVPLQTALMLVHGYLTNFKNESLLFFKENFKPFCSKTHMILPSSAI 428 Query: 298 SNLEILR-TLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFF-- 354 +L+I + S + SLL +D++ T G R IA PL + +I RLD++ Sbjct: 429 ESLDIFENSTDRSSKGSLLWVLDHTRTNYGLRNLKNWIAKPLINIDQIQQRLDAVQCIST 488 Query: 355 -IQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKND- 412 + N I I + +L+ D+ R L+R+ G+ +++ + +R + LF + Sbjct: 489 EVGN-IFIESLNNMLRDGQDLERILNRIAYGKTSRREVYLF---LRELTQLATLFSSHHR 544 Query: 413 -LPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETR------ 465 + + A K+ ++ SL + + L + F DA+LD+ Sbjct: 545 YIETNVLSANGKI-RMQSSLLANIFTDLDEYWKQFPIPNFLAMINIDAALDKNPDRPYVE 603 Query: 466 ----SLRDQSKRIIASLQLKYAE----ETKIKNLKI-------KHNNNLGYFIEVTSSSA 510 + D+++ +I+ Q A ++KN+++ + + + + +E+ ++ Sbjct: 604 YFNLTKYDRAEPLISKQQDIEAVIGELRDELKNIRVILKRPMLNYKDEIDFLVEIRNTQV 663 Query: 511 SVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAII 570 S + D ++ + ++RF T L ++ + L+ +E I Sbjct: 664 SSVPVD------WVKVASTKAVSRFQTPGTAKLVAKLQYHKELLQDLALQEYESFIKRIT 717 Query: 571 EQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI-VKDGRHPIVEKTLKQQ 629 + SL A ++ D ++LA + +Y RP + + I V +GR+PI+E Sbjct: 718 GEYTSLRKAILHLSTYDCILSLAATSCNVDYVRPKFNTAPQCINVINGRNPIIESL---- 773 Query: 630 SSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAH 689 ++ ND +L ++ K+ ++TGPNMGGKS+++RQ AL+VIMAQ+G YVPA A Sbjct: 774 -DVRYMPNDVNL----NREGKKIMIITGPNMGGKSSYIRQVALLVIMAQIGCYVPAQEAE 828 Query: 690 IGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLS 749 I D++F+R+G+ DNL STF +EM E IL +T S ++LDE+GRGT T DG+S Sbjct: 829 FSIFDQIFTRIGAYDNLLRNDSTFKIEMTEMVQILRSSTENSLLLLDEVGRGTGTHDGIS 888 Query: 750 IAWATIEYLHET-NRCRGLL-ATHFHELTDL-SKSLKRFHNATLQVSDSNE---GIIFLH 803 I++A + Y E N C +L TH+ L + S L +H + ++ E ++FL+ Sbjct: 889 ISYALLRYFIELHNACPLILFITHYASLGSIRSPILGNYHMSYIEEKRPGENWPSVVFLY 948 Query: 804 KVIPGIADHSYGIQVGKLAGLPNTVISRAYDI 835 K+ G A +SYG+ V KLA + +I+RAY I Sbjct: 949 KLKEGRAHNSYGLNVAKLADIQTGIINRAYKI 980 >gi|71017883|ref|XP_759172.1| hypothetical protein UM03025.1 [Ustilago maydis 521] gi|46098793|gb|EAK84026.1| hypothetical protein UM03025.1 [Ustilago maydis 521] Length = 963 Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 178/587 (30%), Positives = 290/587 (49%), Gaps = 62/587 (10%) Query: 285 DIQSTLFIDSAARSNLEIL---RTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDS 341 D+ L +D++A L + S+ S+ ++ TG G RL + + PL + Sbjct: 300 DLSQYLRLDNSALRALNLFPEPGQTGSSKNTSIYGLLNRCRTGQGQRLLGQWLKQPLVNV 359 Query: 342 TKINTRLDSINFFIQNPILINPIQK-ILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRS 400 I R + + F+ + IQ LK PD+ R R + G +D+ + I Sbjct: 360 HAIEQRQNLVELFVNDNSTRQLIQNDYLKLMPDMHRISKRFQKGIATLEDVVRVYQAILR 419 Query: 401 GINILNLFLKNDLPEELRGAVEK-------------LKKLPQSLEKTLS-SMLSDDLPTF 446 ++ + P E + K L K + +E TL + LS Sbjct: 420 LPGLIQTLADMETPSEALSELLKTSYLDPFEAHRAALTKFNELVEATLDLTELSQHNFVI 479 Query: 447 KRD-GGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEV 505 K D LR+ +A LD+TR D+ R+ A +L+ E K L +++++ GY + V Sbjct: 480 KPDFDDNLREIKEA-LDDTRDKLDEQHRL-AGKELRMDTE---KKLHLENHHVYGYCLRV 534 Query: 506 TSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITN------ATNSALLIEL 559 T + A +++ +K ++ T+ FT L DL N + + S L+ E+ Sbjct: 535 TRTDAGLVR----NKKGYMDIATVKGGLYFTNEALRDLANDFKDLSERYSRSQSGLVKEV 590 Query: 560 ESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN--YCRPII-DNSTNFIV-- 614 +I S+ L+ + V+A +D+ ++ A ++ Y +P++ + TN V Sbjct: 591 --IQIASS----YCPPLEKLNVVLAHLDVIVSFAHVSDSAPVPYVKPVVSEKGTNADVDL 644 Query: 615 KDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV 674 ++ RHP +E FI+ND ++ + + ++TGPNMGGKST++RQ +I Sbjct: 645 REARHPCLEV----MDDINFISNDTEMV----RGQSEFLVITGPNMGGKSTYIRQVGIIA 696 Query: 675 IMAQMGSYVPASY-AHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFV 733 +MAQ+G +VPA+ A + + D + +RVG+ D+ G STFM EM+ETA+IL AT+ S + Sbjct: 697 LMAQIGCFVPAAQGARLPVFDCILARVGAGDSQLKGVSTFMAEMLETATILKTATSDSLI 756 Query: 734 ILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS---LKRFHNATL 790 I+DE+GRGT+T DG +AWA E++ RC+ L ATHFHELT+L+ ++ H L Sbjct: 757 IIDELGRGTSTYDGFGLAWAISEWIATNIRCKCLFATHFHELTNLAAQQPHVRNLHVVAL 816 Query: 791 -----QVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 S + I L+KV PGI+D S GI V +LA P +VI+ A Sbjct: 817 VKQKEGGSRQDRDITLLYKVQPGISDQSLGINVAELANFPPSVIALA 863 >gi|254582410|ref|XP_002497190.1| ZYRO0D17490p [Zygosaccharomyces rouxii] gi|186703828|emb|CAQ43516.1| MutS protein homolog 3 [Zygosaccharomyces rouxii] gi|238940082|emb|CAR28257.1| ZYRO0D17490p [Zygosaccharomyces rouxii] Length = 1006 Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 171/610 (28%), Positives = 305/610 (50%), Gaps = 71/610 (11%) Query: 287 QSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINT 346 ++ + ++S A +L+I +GS + SL +D++ T G R E I+ PL + T I Sbjct: 404 KAHMLLNSNALESLDIF--TNGSGKGSLFWVLDHTRTAFGYRQLREWISKPLLNRTDIED 461 Query: 347 RLDSINFFIQ--NPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIR---SG 401 RLD++ + N + + ++LK++PD+ R+L+R+ GR K++ + Sbjct: 462 RLDAVECVKEEINKLFFESLNQLLKNTPDLLRTLNRIAYGRTSRKEVYFFLKQLSLFGGH 521 Query: 402 INILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLP------------TFKRD 449 + ++++ +++ GA+ KL +L + ++ L D+ P ++D Sbjct: 522 FSAHSVYINSEIRSS-NGALYHRSKLLATLFQEMADFL-DNSPMPYLMSMINVSAVMEKD 579 Query: 450 ------GGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEET-KIKNL----KIKHNNN 498 G F + D S + Q +R I ++Q + EE +++ + +K+ + Sbjct: 580 MEKHVTGFFNLNNYDNS-----EVIIQRQREIGAVQDELTEELHRVQKMLGRPYLKYKDE 634 Query: 499 LGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIE 558 + Y IEV +S L D ++ ++RF T I L R+ + L E Sbjct: 635 VEYLIEVRNSQLKNLPPD------WVKVNNTKMVSRFHTPITIKLVERLQYHKD-MLYNE 687 Query: 559 LES-FEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFI-VKD 616 E+ + I ++ + L + I D +ALA + NY RPI + I + Sbjct: 688 AEAEYRRFLQKITKEYQPLKKFIRNIGNYDSLLALAATSCNANYVRPIFTDEKQCINAVN 747 Query: 617 GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIM 676 R+P++E +++ND +S + GK+ ++TGPNMGGKS+++RQ A +V++ Sbjct: 748 ARNPVIESL-----DVNYVSNDIKMS----EKDGKVLIITGPNMGGKSSYVRQVAFLVLL 798 Query: 677 AQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILD 736 AQ+GS+VPA + + I D +F+R+G+ DNL G STF VE++E I+ +T+ S ++LD Sbjct: 799 AQIGSFVPADHLELSIFDNIFTRIGAYDNLLRGESTFKVELLEVMQIIKNSTSNSLLLLD 858 Query: 737 EIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKS--LKRFHNATLQVSD 794 E+GRGT+T DG +IA+ ++Y N C +L T + ++ L L+ +H ++ Sbjct: 859 EVGRGTSTEDGKAIAFTVLQYFLTMNGCPFILFTTHYSMSGLPNPAILRHYHMDFVEERK 918 Query: 795 SNEG---IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMR 851 E ++FL+K+ G A +SYG+ V +LA L +I+RAY+I + MR Sbjct: 919 PGENWPSVVFLYKLKEGFAHNSYGLNVARLANLDRDIINRAYEI-----------SEHMR 967 Query: 852 LYYPEIQTKE 861 Y IQ E Sbjct: 968 ADYERIQNLE 977 Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 9/97 (9%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLG------- 78 TP+ +Q E+K N D L+ R+G Y+ F DA++ASR L I L L Sbjct: 125 TPLDQQVKELKLKNFDKLLVVRVGYKYKCFAQDAVVASRILHIKLVPGKLTLDDSDPQDL 184 Query: 79 --KDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIES 113 K C P N ++ +L+ ++ I EQ+E+ Sbjct: 185 QHKQFAYCSFPDSRINVHLVRLVTRNLKVGIVEQVET 221 >gi|321253333|ref|XP_003192701.1| hypothetical protein CGB_C2370C [Cryptococcus gattii WM276] gi|317459170|gb|ADV20914.1| conserved hypothetical protein [Cryptococcus gattii WM276] Length = 1189 Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 172/594 (28%), Positives = 292/594 (49%), Gaps = 50/594 (8%) Query: 261 AAAISYIKKTQMVN--KPTIGYPEREDIQSTLFIDSAARSNLEILRTLS-GSREQSLLKT 317 A AI Y+K+ + N + T + R +S + + S +NLEI + + G SL+ Sbjct: 564 AVAIRYMKRFGLENAFRHTSSF-VRFANRSHMLLSSNTLTNLEIYQNQTDGGLYGSLMWL 622 Query: 318 IDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQN-PILINPIQKILKSSPDVPR 376 +D+ T G RL E + PL D T + R D+I ++N + ++ +L + PD+ R Sbjct: 623 LDHCKTRMGKRLLREWVGRPLLDVTALKARADAIEEIMENNSYHMEKLRSLLLNMPDLVR 682 Query: 377 SLSRLKIGRGEPKDIA-----VIRDGIRSGINILNLF---LKNDLPEELRGAVEKLKKLP 428 L+R++ G+ P ++A ++R N N+F L N++P L + ++ Sbjct: 683 GLTRVQYGKATPNELATLLITLVRLASEFKPNTGNVFRSCLLNNIPNTLPTVLNTSQRFL 742 Query: 429 QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI 488 +L L +D D G E + ++D L E KI Sbjct: 743 NAL--NLKQARENDEANLWADPG--------KFPEIQDVKDCICVCEIELNEHLMEVRKI 792 Query: 489 ---KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLEN 545 LK + + Y +EV +D +++ + R+ T +++ + Sbjct: 793 LKKPTLKYITVSGIEYLVEVPI-------RDTIVPAQWVKISATRTVNRYHTPKILAIMK 845 Query: 546 RITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPI 605 T L+ E+F + + E + L S+ IA+ID ++LA A YC+P Sbjct: 846 ERTQHQEKLSLVAHEAFTAFQSEVAEYHD-LVVVSKQIAVIDCLMSLAQTAAASGYCKPK 904 Query: 606 IDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKST 665 + GRHP+VE L++++ PF D S K G ++TGPNM GKS+ Sbjct: 905 FAVEPELKIVAGRHPMVE-MLREEAYVPF---DIHFS----KEEGTTKIITGPNMAGKSS 956 Query: 666 FLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILN 725 +R ALIV MAQ+GS+VPA+ + + D + +R+G++D + G+STFMVE+ ET+ IL Sbjct: 957 TVRAMALIVCMAQIGSFVPATSVTLSVHDSVQTRMGASDEIGRGKSTFMVELSETSDILR 1016 Query: 726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELT-DLSKS--- 781 T +S VILDE+GRGT+T DG +IA+AT+ ++ E C L TH+ + DL++ Sbjct: 1017 TITPRSLVILDELGRGTSTYDGAAIAYATLSHIAEIG-CNTLFVTHYPMIAQDLAREKPD 1075 Query: 782 -LKRFHNA--TLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRA 832 + +H + +++ D + I FL+++ G+ + S+G+ +LAGLP ++ A Sbjct: 1076 KISNWHMSFDEIKMPDGSAEITFLYQLTRGLQEASFGVWCARLAGLPKPILDNA 1129 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 6/122 (4%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP+ +Q+++IK N D L+ +G Y+ +DA ASR LGI ++ Sbjct: 241 TPLEKQFMDIKEQNKDVLLLMEVGYKYKFHGEDAKTASRELGIVAFP-----SRNFFTAS 295 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKRGNKSL-VRRNVVRLVTPGTLTEDQL 144 +P H + +++KL+ +G+++ + Q E+ K N++ R + L T T ED Sbjct: 296 IPTHRLHIHVKKLLSLGYKVGVITQTETAALKKIGDNRNAPFTRKLTHLFTAATYVEDPS 355 Query: 145 LS 146 LS Sbjct: 356 LS 357 >gi|145341286|ref|XP_001415744.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144575967|gb|ABO94036.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 936 Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 184/650 (28%), Positives = 306/650 (47%), Gaps = 57/650 (8%) Query: 285 DIQSTLFIDSAARSNLEILRTLS-GSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTK 343 D + +D++A L +L S G SL ++ T G RL + + PL D + Sbjct: 289 DTGRYMRLDASALRALNVLPERSDGPSSFSLYGLLNKCRTPMGRRLLSRWLKQPLVDVNE 348 Query: 344 INTRLDSINFFIQNPILINPIQKI-LKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGI 402 I TR D +N F+ N + + ++ L++ PD+ R +L+ + D+ + + Sbjct: 349 IATRHDVVNEFVTNAEVRDALRGAHLRALPDIERITRKLERRKASLMDLCRLYQASAALP 408 Query: 403 NILNL----------FLKNDLPEELR--GAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDG 450 ++ +++ EEL+ A L + LE + DL D Sbjct: 409 HMAEALERCEGRHGDYIRKKYAEELKKLSAPSHLGRFEALLEAAV------DLSKIP-DE 461 Query: 451 GFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKI---KNLKIKHNNNLGYFIEVTS 507 + DA L E + +D ++ I +++ + K LK++HNN G+F+ +T Sbjct: 462 YVICASYDAELGELQKQKDTLEKQIRDAFADASDDLGMERDKQLKLEHNNMHGWFMRLTK 521 Query: 508 SSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSN 567 + ++K L + + + + T+FT ++ L + + S + + + + Sbjct: 522 KDETSVRKKLSVSYQIL--EAKKDGTKFTNKKIRGLSEQRVSLDRSYDAKQRHLVDRVVD 579 Query: 568 AIIEQSESLDNASQVIAIIDI--SIALAILAKEQNYCRPIIDNSTNFIV--KDGRHPIVE 623 SE + S + A ID+ S A ++ + RPI+ T+ + ++ RHP VE Sbjct: 580 VAATFSEIFLSVSAMTAEIDVLASFAEVAVSAPVPFVRPIMHEKTSDTIHLENSRHPNVE 639 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLW--LLTGPNMGGKSTFLRQNALIVIMAQMGS 681 Q + FIAN C + G+ W ++TGPNMGGKSTF+RQ + V++AQ+GS Sbjct: 640 A----QDNVRFIANTCSM------KKGESWFQIITGPNMGGKSTFIRQVGVCVLLAQVGS 689 Query: 682 YVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRG 741 +VP A I + D +F+RVG+ D G STFM EM+ETA+IL AT+ S VI+DE+GRG Sbjct: 690 FVPCDDAVIAVRDAIFARVGAGDCQLRGISTFMAEMLETAAILKAATSSSLVIIDELGRG 749 Query: 742 TATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLS--KSLKRFHNATLQVSDSNEGI 799 T+T DG +AWA E++ + L ATHFHELT L + FH L + + + Sbjct: 750 TSTYDGFGLAWAISEHIVNEIQAPCLFATHFHELTALEGPSGVSNFHVEAL-IDQESRKL 808 Query: 800 IFLHKVIPGIADHSYGIQVGKLAGLPNTV--ISRA-YDILKTFEKLYHH-------NQKD 849 L+++ PG D S+GI + A P V I+RA D L+ F K + K Sbjct: 809 TMLYQIKPGACDQSFGIHCAEFARFPEEVLKIARAKADELEDFSKSGAERAVADISDPKR 868 Query: 850 MRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKA 899 R P + ++ + + F+ + LD M+P A+ +K+ Sbjct: 869 QRTDEPGVSDDMARGVVRA--RQFLSDFAAVPLDRMTPAEAVARARQLKS 916 >gi|303274132|ref|XP_003056389.1| predicted protein [Micromonas pusilla CCMP1545] gi|226462473|gb|EEH59765.1| predicted protein [Micromonas pusilla CCMP1545] Length = 978 Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 154/550 (28%), Positives = 264/550 (48%), Gaps = 56/550 (10%) Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKI-LKSS 371 S+ ++ + G RL + PL D+ +I+ R D + + +P + ++++ L+S Sbjct: 345 SIYGLLNRCCSAMGRRLLLRWLKQPLVDAEEISGRHDVVEALVDDPEARDTLRRVHLRSL 404 Query: 372 PDVPRSLSRLKIGRGEPKDIA---------------VIRDGIRSGINILNLFLKNDLP-- 414 PD+ R +L+ R D+ +R R G+ + + + L Sbjct: 405 PDMERLTRKLERRRATLLDLCRLYQASTAIPHIAEVCVRMKDRYGLMMSSRYSSALLKLH 464 Query: 415 -EELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKR 473 EE G E L + L++ + P++ + G L+ DA+ E + + S Sbjct: 465 DEEHLGRFEALLEAAVDLDRIPDEYVVS--PSYDEELGKLKKLKDAASQEIHKVFESSAE 522 Query: 474 IIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLT 533 + + K LK++HNN G+++ +T ++K L + + + + + T Sbjct: 523 DLCT--------PVDKVLKLEHNNMHGWYLRLTKKDEVTVRKKLLANYQVL--EAKKDGT 572 Query: 534 RFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDI--SIA 591 +FT +L L + T+ + + E + + ++ + S + A +D+ S A Sbjct: 573 KFTNKQLRALSCKRTDLDRMYASQQRQLVERIVDVASSFADVFLHVSAICAEVDVLTSFA 632 Query: 592 LAILAKEQNYCRPIIDNSTNFIVKD--------GRHPIVEKTLKQQSSKPFIANDCDLSC 643 ++ + + RP + N D RHP +E Q FIAN C L Sbjct: 633 EVAISAPEPFVRPTMTAKKNIFEADTREIYLGGSRHPCIEA----QEGSQFIANTCKL-- 686 Query: 644 PNDKNSGKLW--LLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVG 701 G W ++TGPNMGGKSTF+RQ + +IMAQ+GS+VP + A I I D +F+RVG Sbjct: 687 ----EQGNSWFQIITGPNMGGKSTFIRQVGVCIIMAQVGSFVPCNMAKIAIRDAIFARVG 742 Query: 702 SADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHET 761 + D G STFM EM+ET++IL AT+ S +I+DE+GRGT+T DG +AWA +++ Sbjct: 743 AGDCQLRGISTFMAEMLETSAILKSATSSSLIIIDELGRGTSTYDGFGLAWAISQHISNN 802 Query: 762 NRCRGLLATHFHELTDLS--KSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVG 819 + L ATHFHELT + + + H ++S + + L++++PG D S+GIQ Sbjct: 803 IKAPCLFATHFHELTAIQSPEGVSNLH-VDAKISMESRKLTMLYRLLPGACDQSFGIQCA 861 Query: 820 KLAGLPNTVI 829 + A P V+ Sbjct: 862 EFARFPADVL 871 >gi|198435135|ref|XP_002126574.1| PREDICTED: similar to MGC85188 protein [Ciona intestinalis] Length = 1307 Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 182/619 (29%), Positives = 294/619 (47%), Gaps = 73/619 (11%) Query: 290 LFIDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLD 349 + +DS SNLEI+ G RE +LL+ +D T G RL + + P + IN RLD Sbjct: 684 MILDSVTLSNLEIIYNSKGEREGTLLERLDNCRTPFGKRLLKQWLCLPPCNPDVINDRLD 743 Query: 350 SINFFIQNPILINPIQKILKSSPDVPRSLSRL----KIGRGE--PKDIAVIRDGIRSGIN 403 +++ + N L++P+ ++ PD+ R LS + K R E P++ A+ + + Sbjct: 744 AVDDIMSNNDLLSPLFSSMRKMPDLERMLSNIHSLSKGARKEDHPENRAIFYEETKYSKK 803 Query: 404 ILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSD--DLPTFKRDGGFLRDGADASL 461 + F+ + + A +KK+ S+ SS+L L + +G F G+ +L Sbjct: 804 KIEDFIS--VLDNYEAAFVSIKKMQGSVASFKSSLLKSVLGLTSGISEGKFPDLGS--TL 859 Query: 462 DETRSLRDQSK-------------------------RIIASLQLKYAEETKIK----NLK 492 + ++ +Q K RI L+ +Y E K K + Sbjct: 860 KQWKNAFNQKKAKETGKITPNAGTNPEYDGAMEDINRINDDLE-RYLNEQKKKLSCSRII 918 Query: 493 IKHNNNLGYFIEVTSSSAS-VLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNAT 551 K N Y +E+ + AS L D ++ F T ++ L + +A Sbjct: 919 YKGTGNKRYQLELPADVASRKLPND------YVISGQRKGFKSFRTPKVDCLLKEMEDAE 972 Query: 552 NSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAK--EQNYCRPII--- 606 + ++ I+ + E + A +A++D+ + A +K + RPII Sbjct: 973 TRRDTAQADTMSIVFREFDKDFEMWNTAVSCLALLDVLSSFAEYSKGDKDEMSRPIILPP 1032 Query: 607 --DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLL-TGPNMGGK 663 + ++ RHP + K + S FI ND L C ++ + LL TGPNMGGK Sbjct: 1033 SSQHQPLLEIRSARHPCITKII---FSDDFIPNDTILGCGDEGEDHPMCLLLTGPNMGGK 1089 Query: 664 STFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASI 723 ST +RQ L+VI+AQ+G YVPA + D++F+R+G++D + +G STF VE+ ET SI Sbjct: 1090 STLMRQVGLVVILAQLGCYVPAESCRMTPCDRIFTRLGASDRIMTGESTFYVELSETYSI 1149 Query: 724 LNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELT-DL--SK 780 L AT S V+LDE+GRGTAT DG SIA+A ++ + CR + +TH+H L DL SK Sbjct: 1150 LKHATKNSLVLLDELGRGTATYDGTSIAYAVLDNIANHVGCRTIFSTHYHTLVEDLAHSK 1209 Query: 781 SLKRFHNATLQVSDSNEG------IIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYD 834 +K H + + D +G + FL+K+ G SYG LA +P +V++ A Sbjct: 1210 HVKLGHMSCMVEHDDVDGDVDKETLTFLYKLADGACPKSYGFHAALLADIPESVVTIARR 1269 Query: 835 ILKTFEKLYHHNQKDMRLY 853 K E+ N K++ L+ Sbjct: 1270 KAKEMEE----NNKNLSLF 1284 Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/206 (25%), Positives = 102/206 (49%), Gaps = 31/206 (15%) Query: 26 TPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCG 85 TP M Q+ ++KS N + ++F+++G FYEL+ DA++ + LG+T K + G Sbjct: 360 TPAMHQWWKLKSTNFNVVLFFKVGKFYELYHMDAVVGVKELGLTYMK------GNFAHSG 413 Query: 86 VPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR-GNKSL------VRRNVVRLVTPGT 138 P Y L++ G+ +A EQ E+P + ++R KSL +RR + R+ T GT Sbjct: 414 FPEVAFGRYADTLVQKGYTVARVEQTETPEQNQQRIRGKSLPKHEKTLRREICRVTTKGT 473 Query: 139 LTEDQLLSPT---DSNYLMAVAR-----------IRTEWAIAWIDISTGIFKISTSNHDR 184 + + +S++L++++ + E+ + ++D + G+F + DR Sbjct: 474 QVHNMWQGGSKHHESDFLLSISERVVNRNESSGSVCREFGVCFVDTTVGVFHLGQFTDDR 533 Query: 185 LISDIMRI----DPREIIFSEKELSH 206 S + + P +++F +LS+ Sbjct: 534 HCSRLCTMLAHHSPSQVLFERGKLSN 559 >gi|219886557|gb|ACL53653.1| unknown [Zea mays] Length = 618 Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 192/642 (29%), Positives = 303/642 (47%), Gaps = 94/642 (14%) Query: 323 TGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLK 382 G G RL + PL D +IN RLD + F+++P L +++ LK D+ R L+ Sbjct: 7 VGMGKRLLNRWLKQPLLDVNEINNRLDMVQAFVEDPELRQGLRQQLKRISDIDRLTHSLR 66 Query: 383 IGRGEPKDIAVIRD---------GIRSGIN------ILNLFLKNDLPEELRGAVEKLKKL 427 + + + GI N I + FL+ P E A + + Sbjct: 67 KKSANLQPVVKLYQSCSRIPYIKGILQQYNGQFSTLIRSKFLE---PLEEWMAKNRFGRF 123 Query: 428 PQSLEKT--LSSMLSDDL---PTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKY 482 +E L+ + + + P + D G L+D + S+ E I +L + Sbjct: 124 SSLVETAIDLAQLENGEYRISPLYSSDLGVLKD--ELSVVENH---------INNLHVDT 172 Query: 483 AEETKI---KNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLE 539 A + + K LK++ +LG+ ++ ++K L I +T + +FT + Sbjct: 173 ASDLDLSVDKQLKLE-KGSLGHVFRMSKKEEQKVRKKLTGSYLII--ETRKDGVKFTNSK 229 Query: 540 LIDLENRITNATNSALLIELESFE--ILSNAIIEQ---SESLDNASQVIAIIDISIALAI 594 L +L ++ AL E S + ++ + + SE +N + V++ +D+ + A Sbjct: 230 LKNLSDQY-----QALFGEYTSCQKKVVGDVVRVSGTFSEVFENFAAVLSELDVLQSFAD 284 Query: 595 LAKEQN--YCRPIIDNS--TNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSG 650 LA Y RP I S + ++ RHP +E Q FI NDC L G Sbjct: 285 LATSCPVPYVRPDITASDEGDIVLLGSRHPCLEA----QDGVNFIPNDCTLV------RG 334 Query: 651 KLW--LLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLAS 708 K W ++TGPNMGGKSTF+RQ + V+MAQ+GS+VP A I + D +F+RVG+ D Sbjct: 335 KSWFQIITGPNMGGKSTFIRQVGVNVLMAQVGSFVPCDQASISVRDCIFARVGAGDCQLH 394 Query: 709 GRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLL 768 G STFM EM+ETASIL A+++S +I+DE+GRGT+T DG +AWA E+L E R L Sbjct: 395 GVSTFMQEMLETASILKGASDKSLIIIDELGRGTSTYDGFGLAWAICEHLMEVTRAPTLF 454 Query: 769 ATHFHELTDLS--KSLKRFHNATLQVSDSNEG---------IIFLHKVIPGIADHSYGIQ 817 ATHFHELT L+ + H + + V++ + G + L+KV PG D S+GI Sbjct: 455 ATHFHELTALAHRNDDEHQHISDIGVANYHVGAHIDPLSRKLTMLYKVEPGACDQSFGIH 514 Query: 818 VGKLAGLPNTVISRAYDILKTFEKL-----YHHNQKD------MRLYYPEIQTKESKNNL 866 V + A P V++ A E + + KD R++ P+ T+ + Sbjct: 515 VAEFANFPEAVVALAKSKAAELEDFSTTPTFSDDLKDEVGSKRKRVFSPDDITRGAARA- 573 Query: 867 SKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAWTLEKYSTD 908 +LF+E+ L +DEM L+ +KA L+K + D Sbjct: 574 ----RLFLEEFAALPMDEMDGSKILEMATKMKA-DLQKDAAD 610 >gi|218199622|gb|EEC82049.1| hypothetical protein OsI_26026 [Oryza sativa Indica Group] Length = 798 Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 178/585 (30%), Positives = 285/585 (48%), Gaps = 61/585 (10%) Query: 292 IDSAARSNLEILRTL------SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKIN 345 IDS + LEI+ L + ++++SL + + + T G RL + PL D IN Sbjct: 172 IDSTSVQTLEIIDPLHTELWGTSNKKKSLFQMLKTTKTTGGTRLLRANLLQPLKDIQTIN 231 Query: 346 TRLDSINFFIQNPILINPIQKILKSSP-DVPRSLSRLKI--------------GR---GE 387 TRLD ++ + N L + + L+ P + + L GR G Sbjct: 232 TRLDCLDELMSNEELFFGLTQGLRKFPKESDKVLCHFCFKPKKDTDEVLKPANGRKSQGL 291 Query: 388 PKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQ--SLEKTLSSMLSDDLP- 444 DI V++ + I L+ L+ LR + + + P+ S+ K + ++ +D+ Sbjct: 292 ISDIIVLKTAL-DAIPFLSKVLRGAKSFLLRNIYQTICENPKYASMRKRIGDVIDEDVVH 350 Query: 445 ------TFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNN 498 T + ++ G D LD R + I +L KY E+ K+ NLKI +NN Sbjct: 351 SRAPFVTCTQQCFAIKAGIDGLLDVARRSFCDTSEAIHNLANKYREDFKLPNLKIPYNNR 410 Query: 499 LG-YFIEVTSSSASVLKKDLESK--DRFIHRQTMSNLTRFTTLELIDLENRITNATNSAL 555 LG YFI V +KD+ + ++FI ++LEL L R +A Sbjct: 411 LGFYFI--------VPQKDITERLPNKFIQVVRHGKNVHCSSLELASLNARNKSAAAECF 462 Query: 556 LIELESFEILSNAIIEQSESLDNASQVIAIIDI---SIALAILAKEQN-YCRPIIDNSTN 611 L E L N I E L ++V+ ++D+ S A I K + Y RP + Sbjct: 463 LRTELCLEGLINEIREDIGILTLLAEVLCLLDMLVNSFAFTISTKPVDRYTRPEFTDDGP 522 Query: 612 FIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNA 671 + GRHPI+E F+ N+ LS + + L+ GPNM GKST+L+Q Sbjct: 523 MAINAGRHPILESL-----HNDFVPNNLFLS-----EASNMVLVMGPNMSGKSTYLQQIC 572 Query: 672 LIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQS 731 LIVI+AQ+G YVPA +A + +VD++F+R+G+ DN+ + STFM EM ETA I+ +++S Sbjct: 573 LIVILAQIGCYVPAQFASLRVVDRVFTRIGTGDNVENNSSTFMTEMKETAFIMQNVSSKS 632 Query: 732 FVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQ 791 +++DE+GR T++ DGL+IAW+ EYL T + + ATH L++L+ + Sbjct: 633 LIVVDELGRATSSSDGLAIAWSCCEYLLST-KAYTVFATHMESLSELATIYPNVKILHFE 691 Query: 792 VSDSNEGIIFLHKVIPGIAD-HSYGIQVGKLAGLPNTVISRAYDI 835 V N+ + F ++ G+ YG+ + K+AGLP++VI A I Sbjct: 692 VDLRNDRLDFKFRLKDGVRKVPHYGLLLAKVAGLPSSVIDTAASI 736 >gi|50083056|gb|AAT70180.1| MSH4 [Arabidopsis thaliana] Length = 792 Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 181/635 (28%), Positives = 302/635 (47%), Gaps = 64/635 (10%) Query: 246 VDTFGSFSQVEKTAAAAAISYIKKTQMV----NKPTIGYPEREDIQSTLFIDSAARSNLE 301 +DT+ + AAAA I +I+ + V + T+ + D + ID+ + NLE Sbjct: 120 LDTYYKQHYLSLAAAAATIKWIEAEKGVIVTNHSLTVTFNGSFDHMN---IDATSVENLE 176 Query: 302 ILRTL------SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFI 355 ++ + ++++SL + + T G RL + PL D INTRLD ++ + Sbjct: 177 LIDPFHNALLGTSNKKRSLFQMFKTTKTAGGTRLLRANLLQPLKDIETINTRLDCLDELM 236 Query: 356 QNPILINPIQKILKSSPD-VPRSLSRLKIGRGEPKDIAVIRDGIRSGINILN--LFLKND 412 N L + ++L+ P+ R L + + + + R N+++ + LK Sbjct: 237 SNEQLFFGLSQVLRKFPEETDRVLCHFCFKPKKVTEAVIGFENTRKSQNMISSIILLKTA 296 Query: 413 L------PEELRGA-----VEKLKKLPQ-----SLEKTLSSMLSDDL-----PTFKRDGG 451 L + L+ A K + + S+ K + ++ DD+ P R Sbjct: 297 LDALPILAKVLKDAKCFLLANVYKSVCENDRYASIRKKIGEVIDDDVLHARVPFVARTQQ 356 Query: 452 F--LRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSS 509 L+ G D LD R + I +L KY EE + NLK+ NN G+F + Sbjct: 357 CFALKAGIDGFLDIARRTFCDTSEAIHNLASKYREEFNLPNLKLPFNNRQGFFFRIP--- 413 Query: 510 ASVLKKDLESK--DRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSN 567 +K+++ K ++F ++LEL L R +A + E L + Sbjct: 414 ----QKEVQGKLPNKFTQVVKHGKNIHCSSLELASLNVRNKSAAGECFIRTETCLEALMD 469 Query: 568 AIIEQSESLDNASQVIAIIDI---SIALAILAKEQN-YCRPIIDNSTNFIVKDGRHPIVE 623 AI E +L ++V+ ++D+ S A I K + Y RP + +S + GRHPI+E Sbjct: 470 AIREDISALTLLAEVLCLLDMIVNSFAHTISTKPVDRYSRPELTDSGPLAIDAGRHPILE 529 Query: 624 KTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV 683 F++N +S + + ++ GPNM GKST+L+Q L+VI+AQ+G YV Sbjct: 530 SI-----HNDFVSNSIFMS-----EATNMLVVMGPNMSGKSTYLQQVCLVVILAQIGCYV 579 Query: 684 PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTA 743 PA +A I +VD++F+R+G+ DNL S STFM EM ETA I+ TN+S +++DE+GR T+ Sbjct: 580 PARFATIRVVDRIFTRMGTMDNLESNSSTFMTEMRETAFIMQNVTNRSLIVMDELGRATS 639 Query: 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLH 803 + DGL++AW+ EYL + + ATH L +L+ V + + F Sbjct: 640 SSDGLAMAWSCCEYLLSL-KAYTVFATHMDSLAELATIYPNVKVLHFYVDIRDNRLDFKF 698 Query: 804 KVIPG-IADHSYGIQVGKLAGLPNTVISRAYDILK 837 ++ G + YG+ + ++AGLP+TVI A I K Sbjct: 699 QLRDGTLHVPHYGLLLAEVAGLPSTVIDTARIITK 733 >gi|79476962|ref|NP_193469.2| MSH4 (MUTS HOMOLOG 4); ATP binding / damaged DNA binding / mismatched DNA binding [Arabidopsis thaliana] gi|332658482|gb|AEE83882.1| DNA mismatch repair protein MSH4 [Arabidopsis thaliana] Length = 792 Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 181/635 (28%), Positives = 302/635 (47%), Gaps = 64/635 (10%) Query: 246 VDTFGSFSQVEKTAAAAAISYIKKTQMV----NKPTIGYPEREDIQSTLFIDSAARSNLE 301 +DT+ + AAAA I +I+ + V + T+ + D + ID+ + NLE Sbjct: 120 LDTYYKQHYLSLAAAAATIKWIEAEKGVIVTNHSLTVTFNGSFDHMN---IDATSVENLE 176 Query: 302 ILRTL------SGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFI 355 ++ + ++++SL + + T G RL + PL D INTRLD ++ + Sbjct: 177 LIDPFHNALLGTSNKKRSLFQMFKTTKTAGGTRLLRANLLQPLKDIETINTRLDCLDELM 236 Query: 356 QNPILINPIQKILKSSP-DVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILN--LFLKND 412 N L + ++L+ P + R L + + + + R N+++ + LK Sbjct: 237 SNEQLFFGLSQVLRKFPKETDRVLCHFCFKPKKVTEAVIGFENTRKSQNMISSIILLKTA 296 Query: 413 L------PEELRGA-----VEKLKKLPQ-----SLEKTLSSMLSDDL-----PTFKRDGG 451 L + L+ A K + + S+ K + ++ DD+ P R Sbjct: 297 LDALPILAKVLKDAKCFLLANVYKSVCENDRYASIRKKIGEVIDDDVLHARVPFVARTQQ 356 Query: 452 F--LRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYFIEVTSSS 509 L+ G D LD R + I +L KY EE + NLK+ NN G+F + Sbjct: 357 CFALKAGIDGFLDIARRTFCDTSEAIHNLASKYREEFNLPNLKLPFNNRQGFFFRIP--- 413 Query: 510 ASVLKKDLESK--DRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSN 567 +K+++ K ++F ++LEL L R +A + E L + Sbjct: 414 ----QKEVQGKLPNKFTQVVKHGKNIHCSSLELASLNV