RPSBLAST alignment for GI: 254780750 and conserved domain: KOG0220

>gnl|CDD|35441 KOG0220, KOG0220, KOG0220, Mismatch repair ATPase MSH4 (MutS family) [Replication, recombination and repair]. Length = 867
 Score =  261 bits (668), Expect = 6e-70
 Identities = 199/829 (24%), Positives = 358/829 (43%), Gaps = 77/829 (9%)

Query: 107 ICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL---TEDQLLSPTDSNYLMAVAR----I 159
                  P   K   +    +R+  +   P      +    +S    + ++AV       
Sbjct: 57  SARDTNYPQTLKTPLSTGNPQRSGYKSWAPSLGYSSSNSSAISAHSPSVIVAVVEGRGLA 116

Query: 160 RTEWAIAWIDISTGIFKIS----TSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFET 215
           R E  +A ID+      +S    ++ + ++I+ +  + P EII S    +    K LF  
Sbjct: 117 RGEIGMASIDLKNPQIILSQFADSTTYAKVITKLKILSPLEIIISNTACAVGNSKLLFTL 176

Query: 216 LGNVAVAQPNV--------FFDHSISESRIADYYN--ITTVDTFGSFSQVEKTAAAAAIS 265
           +        NV        +F+ +     I        +TV            AAAA + 
Sbjct: 177 ITENF---KNVNFTTISRKYFNSTKGLEYIEQLCIAEFSTVLEEIQSKTYALGAAAALLK 233

Query: 266 YIKKTQ-MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324
           Y+++ Q  V  P       +  ++T  IDS++  +LE++         +L   ++Y+ T 
Sbjct: 234 YVEEIQSSVYAPKSLRICFQGSENTAMIDSSSAQSLELVINNQYKNNHTLFGVLNYTKTP 293

Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL--- 381
            G R     I  PLTD   IN RL++I   + +  L   ++ ++K   D+ + LS L   
Sbjct: 294 GGYRRLRSSILQPLTDIETINMRLEAIQELLADEELFFGLRSVIKRFLDLDQLLSVLVQI 353

Query: 382 ------KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLK-KLPQSLEKT 434
                      +  ++  ++  +   ++ L + LKN     LR      K K    + + 
Sbjct: 354 PTQDTVNAAESKINNLIYLKHTLEL-VDPLKIALKNCNSNLLREYYGSFKDKRFGIILEK 412

Query: 435 LSSMLSDDLPTFK-------RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487
           +  +++DD    K       +    ++   +  LD  R    +    IA +  +  E+  
Sbjct: 413 IKEVINDDALYAKGCLNLRTQKCYAVKSNINGFLDIARRTYTEIVDDIAGMISQLGEKFS 472

Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547
           + NL++  ++  G+FI +T+   ++    L     FI    + N   FT+ +LI +  R+
Sbjct: 473 L-NLRLSFSSARGFFIRITTDCIALPSDTL--PSEFIKISKVKNSYSFTSADLIKMNERL 529

Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607
                   L+       L + I E    L   ++ ++++D+  + A      +Y RP   
Sbjct: 530 KEVLREIFLMTEMIVCKLLDEIYEHISCLYKLAEAVSMLDMLCSFAHACTLSDYVRPEFT 589

Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667
           +S    +K GRHPI+EK   ++     IAN+  ++           ++TGPNM GKST+L
Sbjct: 590 DS--LAIKQGRHPILEKISAEK----PIANNTYVT-----EGSNFLIITGPNMSGKSTYL 638

Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727
           +Q AL  IMAQ+GSYVPA YA   +  ++F+R+G+ D L    STFM EM E A IL  A
Sbjct: 639 KQVALCQIMAQIGSYVPAEYASFRVFKRIFTRMGTNDELERNSSTFMSEMKEAAYILQNA 698

Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDL---SKSLKR 784
              S ++LDE+GRGT+T +G++I +A  EYL    +    LATHF ++  +     ++  
Sbjct: 699 NKNSLIVLDELGRGTSTEEGIAITYAVCEYLLSL-KAYTFLATHFLDIAAIANYYPAVDN 757

Query: 785 FHNATLQVSDSNEGIIFLHKVIPG-IADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY 843
            H   L  +D N      +K+  G   + +YG++  +++ LP++++  A +I        
Sbjct: 758 LH--FLVQTDENSSKNKKYKLSRGLTEEKNYGLKAAEVSSLPDSIVEDAKEITTQITAQI 815

Query: 844 HHNQKDMRLYYPEIQTKESKNNLS---------KNDKLFVEKIKCLNLD 883
             NQ+D     PE++ + +  +L+          ++     K+K L   
Sbjct: 816 LQNQRD----TPEMERQRAVYHLATRLVQTAGNSDEDSLRIKLKNLKKK 860