RPSBLAST alignment for GI: 254780750 and conserved domain: KOG0220
>gnl|CDD|35441 KOG0220, KOG0220, KOG0220, Mismatch repair ATPase MSH4 (MutS family) [Replication, recombination and repair]. Length = 867
Score = 261 bits (668), Expect = 6e-70
Identities = 199/829 (24%), Positives = 358/829 (43%), Gaps = 77/829 (9%)
Query: 107 ICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTL---TEDQLLSPTDSNYLMAVAR----I 159
P K + +R+ + P + +S + ++AV
Sbjct: 57 SARDTNYPQTLKTPLSTGNPQRSGYKSWAPSLGYSSSNSSAISAHSPSVIVAVVEGRGLA 116
Query: 160 RTEWAIAWIDISTGIFKIS----TSNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFET 215
R E +A ID+ +S ++ + ++I+ + + P EII S + K LF
Sbjct: 117 RGEIGMASIDLKNPQIILSQFADSTTYAKVITKLKILSPLEIIISNTACAVGNSKLLFTL 176
Query: 216 LGNVAVAQPNV--------FFDHSISESRIADYYN--ITTVDTFGSFSQVEKTAAAAAIS 265
+ NV +F+ + I +TV AAAA +
Sbjct: 177 ITENF---KNVNFTTISRKYFNSTKGLEYIEQLCIAEFSTVLEEIQSKTYALGAAAALLK 233
Query: 266 YIKKTQ-MVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSGSREQSLLKTIDYSITG 324
Y+++ Q V P + ++T IDS++ +LE++ +L ++Y+ T
Sbjct: 234 YVEEIQSSVYAPKSLRICFQGSENTAMIDSSSAQSLELVINNQYKNNHTLFGVLNYTKTP 293
Query: 325 AGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRL--- 381
G R I PLTD IN RL++I + + L ++ ++K D+ + LS L
Sbjct: 294 GGYRRLRSSILQPLTDIETINMRLEAIQELLADEELFFGLRSVIKRFLDLDQLLSVLVQI 353
Query: 382 ------KIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLK-KLPQSLEKT 434
+ ++ ++ + ++ L + LKN LR K K + +
Sbjct: 354 PTQDTVNAAESKINNLIYLKHTLEL-VDPLKIALKNCNSNLLREYYGSFKDKRFGIILEK 412
Query: 435 LSSMLSDDLPTFK-------RDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETK 487
+ +++DD K + ++ + LD R + IA + + E+
Sbjct: 413 IKEVINDDALYAKGCLNLRTQKCYAVKSNINGFLDIARRTYTEIVDDIAGMISQLGEKFS 472
Query: 488 IKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRI 547
+ NL++ ++ G+FI +T+ ++ L FI + N FT+ +LI + R+
Sbjct: 473 L-NLRLSFSSARGFFIRITTDCIALPSDTL--PSEFIKISKVKNSYSFTSADLIKMNERL 529
Query: 548 TNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPIID 607
L+ L + I E L ++ ++++D+ + A +Y RP
Sbjct: 530 KEVLREIFLMTEMIVCKLLDEIYEHISCLYKLAEAVSMLDMLCSFAHACTLSDYVRPEFT 589
Query: 608 NSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFL 667
+S +K GRHPI+EK ++ IAN+ ++ ++TGPNM GKST+L
Sbjct: 590 DS--LAIKQGRHPILEKISAEK----PIANNTYVT-----EGSNFLIITGPNMSGKSTYL 638
Query: 668 RQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA 727
+Q AL IMAQ+GSYVPA YA + ++F+R+G+ D L STFM EM E A IL A
Sbjct: 639 KQVALCQIMAQIGSYVPAEYASFRVFKRIFTRMGTNDELERNSSTFMSEMKEAAYILQNA 698
Query: 728 TNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDL---SKSLKR 784
S ++LDE+GRGT+T +G++I +A EYL + LATHF ++ + ++
Sbjct: 699 NKNSLIVLDELGRGTSTEEGIAITYAVCEYLLSL-KAYTFLATHFLDIAAIANYYPAVDN 757
Query: 785 FHNATLQVSDSNEGIIFLHKVIPG-IADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLY 843
H L +D N +K+ G + +YG++ +++ LP++++ A +I
Sbjct: 758 LH--FLVQTDENSSKNKKYKLSRGLTEEKNYGLKAAEVSSLPDSIVEDAKEITTQITAQI 815
Query: 844 HHNQKDMRLYYPEIQTKESKNNLS---------KNDKLFVEKIKCLNLD 883
NQ+D PE++ + + +L+ ++ K+K L
Sbjct: 816 LQNQRD----TPEMERQRAVYHLATRLVQTAGNSDEDSLRIKLKNLKKK 860