RPSBLAST alignment for GI: 254780750 and conserved domain: KOG0221
>gnl|CDD|35442 KOG0221, KOG0221, KOG0221, Mismatch repair ATPase MSH5 (MutS family) [Replication, recombination and repair]. Length = 849
Score = 217 bits (554), Expect = 1e-56
Identities = 150/588 (25%), Positives = 270/588 (45%), Gaps = 40/588 (6%)
Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFI--QNPILINPIQKILKS 370
SL ++ + G +L +P TD ++++RLD I FF+ QN + + ++L
Sbjct: 268 SLFGLLNRCHSKWGEKLLRLWFTNPTTDLGELSSRLDVIQFFLLPQNADMAQMLSRLLGR 327
Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEK-----LK 425
+VP L R+K G + D V+ + S + I + +L + + L
Sbjct: 328 IKNVPLILKRMKSGHTKLSDWQVLYSTVYSALGIRDACRSLPQSIQLFRDIAQEFSDDLH 387
Query: 426 KLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAE- 484
++ + K + S F + G D LDE R + + K E
Sbjct: 388 EIASLIGKVIDFEGSLAENRFT-----VLPGIDPELDEKRRRYMGLPSFLTEVARKELEN 442
Query: 485 -ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTR-FTTLELID 542
+++I ++ + + +G+ + + + V D E+ F+ R T EL
Sbjct: 443 LDSRIPSVSVVYIPLIGFLLSIPRLPSMVEASDFENGLDFMFLSEEKLHYRNARTKELDA 502
Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602
L I E L ++ + L + + +D+ ++LA A + Y
Sbjct: 503 LLGDIYCEIRDQ---ETLIMYQLQCQVLARKAVLTRVLDLASRLDVLLSLASAAADYGYS 559
Query: 603 RP-IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661
RP ++ +++GRHP++E F+ N ++ + G++ ++TGPN
Sbjct: 560 RPRLVPEVLILRIQNGRHPLMELCADT-----FVPNSTEI----GGDKGRIKVITGPNAS 610
Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721
GKS +L+Q LIV +A +GS+VPA A IGIVD++F+R+ S ++++ G+STFM+++ + A
Sbjct: 611 GKSIYLKQVGLIVFLAHIGSFVPAEEAEIGIVDRIFTRIHSCESVSLGQSTFMIDLNQVA 670
Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC--RGLLATHFHELTDLS 779
L AT QS V++DE G+GT T DGLS+ + + + R + THFHEL +
Sbjct: 671 KALRNATAQSLVLIDEFGKGTNTEDGLSLLASVMRHWLARGPTCPRIFVCTHFHELVNEQ 730
Query: 780 ----KSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI 835
+ +F + D E I+FL++V G+A S+ + K AGLP+ V++RA ++
Sbjct: 731 LLPQNPIVQFLTMEVLREDG-EDIVFLYRVCEGLAKASFALHTAKQAGLPDKVVARAKEV 789
Query: 836 LKTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLD 883
K ++ ++ + +N + DK ++ NLD
Sbjct: 790 SDAIRS-----GKPVKPVKDLLKKNQMENCQTLVDKFMKLDLELPNLD 832