RPSBLAST alignment for GI: 254780750 and conserved domain: KOG0221

>gnl|CDD|35442 KOG0221, KOG0221, KOG0221, Mismatch repair ATPase MSH5 (MutS family) [Replication, recombination and repair]. Length = 849
 Score =  217 bits (554), Expect = 1e-56
 Identities = 150/588 (25%), Positives = 270/588 (45%), Gaps = 40/588 (6%)

Query: 313 SLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFI--QNPILINPIQKILKS 370
           SL   ++   +  G +L      +P TD  ++++RLD I FF+  QN  +   + ++L  
Sbjct: 268 SLFGLLNRCHSKWGEKLLRLWFTNPTTDLGELSSRLDVIQFFLLPQNADMAQMLSRLLGR 327

Query: 371 SPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEK-----LK 425
             +VP  L R+K G  +  D  V+   + S + I +         +L   + +     L 
Sbjct: 328 IKNVPLILKRMKSGHTKLSDWQVLYSTVYSALGIRDACRSLPQSIQLFRDIAQEFSDDLH 387

Query: 426 KLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAE- 484
           ++   + K +    S     F      +  G D  LDE R         +  +  K  E 
Sbjct: 388 EIASLIGKVIDFEGSLAENRFT-----VLPGIDPELDEKRRRYMGLPSFLTEVARKELEN 442

Query: 485 -ETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTR-FTTLELID 542
            +++I ++ + +   +G+ + +    + V   D E+   F+         R   T EL  
Sbjct: 443 LDSRIPSVSVVYIPLIGFLLSIPRLPSMVEASDFENGLDFMFLSEEKLHYRNARTKELDA 502

Query: 543 LENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYC 602
           L   I          E      L   ++ +   L     + + +D+ ++LA  A +  Y 
Sbjct: 503 LLGDIYCEIRDQ---ETLIMYQLQCQVLARKAVLTRVLDLASRLDVLLSLASAAADYGYS 559

Query: 603 RP-IIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMG 661
           RP ++       +++GRHP++E          F+ N  ++      + G++ ++TGPN  
Sbjct: 560 RPRLVPEVLILRIQNGRHPLMELCADT-----FVPNSTEI----GGDKGRIKVITGPNAS 610

Query: 662 GKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETA 721
           GKS +L+Q  LIV +A +GS+VPA  A IGIVD++F+R+ S ++++ G+STFM+++ + A
Sbjct: 611 GKSIYLKQVGLIVFLAHIGSFVPAEEAEIGIVDRIFTRIHSCESVSLGQSTFMIDLNQVA 670

Query: 722 SILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRC--RGLLATHFHELTDLS 779
             L  AT QS V++DE G+GT T DGLS+  + + +         R  + THFHEL +  
Sbjct: 671 KALRNATAQSLVLIDEFGKGTNTEDGLSLLASVMRHWLARGPTCPRIFVCTHFHELVNEQ 730

Query: 780 ----KSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDI 835
                 + +F    +   D  E I+FL++V  G+A  S+ +   K AGLP+ V++RA ++
Sbjct: 731 LLPQNPIVQFLTMEVLREDG-EDIVFLYRVCEGLAKASFALHTAKQAGLPDKVVARAKEV 789

Query: 836 LKTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLD 883
                       K ++     ++  + +N  +  DK     ++  NLD
Sbjct: 790 SDAIRS-----GKPVKPVKDLLKKNQMENCQTLVDKFMKLDLELPNLD 832