BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780750|ref|YP_003065163.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str. psy62] (920 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780750|ref|YP_003065163.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str. psy62] Length = 920 Score = 1889 bits (4892), Expect = 0.0, Method: Compositional matrix adjust. Identities = 920/920 (100%), Positives = 920/920 (100%) Query: 1 MTKEFSSPQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDAL 60 MTKEFSSPQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDAL Sbjct: 1 MTKEFSSPQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDAL 60 Query: 61 LASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR 120 LASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR Sbjct: 61 LASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQIESPLEAKKR 120 Query: 121 GNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTS 180 GNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTS Sbjct: 121 GNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRTEWAIAWIDISTGIFKISTS 180 Query: 181 NHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADY 240 NHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADY Sbjct: 181 NHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADY 240 Query: 241 YNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNL 300 YNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNL Sbjct: 241 YNITTVDTFGSFSQVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNL 300 Query: 301 EILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL 360 EILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL Sbjct: 301 EILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPIL 360 Query: 361 INPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGA 420 INPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGA Sbjct: 361 INPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGA 420 Query: 421 VEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 VEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL Sbjct: 421 VEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQL 480 Query: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL Sbjct: 481 KYAEETKIKNLKIKHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLEL 540 Query: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN Sbjct: 541 IDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQN 600 Query: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM Sbjct: 601 YCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNM 660 Query: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET Sbjct: 661 GGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIET 720 Query: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK Sbjct: 721 ASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 Query: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE Sbjct: 781 SLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 Query: 841 KLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAW 900 KLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAW Sbjct: 841 KLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLYAVKAW 900 Query: 901 TLEKYSTDEDSEPLSSKQEN 920 TLEKYSTDEDSEPLSSKQEN Sbjct: 901 TLEKYSTDEDSEPLSSKQEN 920 >gi|254780286|ref|YP_003064699.1| deoxyguanosinetriphosphate triphosphohydrolase-like protein [Candidatus Liberibacter asiaticus str. psy62] Length = 410 Score = 28.1 bits (61), Expect = 0.66, Method: Compositional matrix adjust. Identities = 12/29 (41%), Positives = 18/29 (62%) Query: 730 QSFVILDEIGRGTATLDGLSIAWATIEYL 758 QSF I+ E+ A DG+++ W T+E L Sbjct: 136 QSFRIVTELECSYADFDGINLTWETLEGL 164 >gi|254780628|ref|YP_003065041.1| coproporphyrinogen III oxidase [Candidatus Liberibacter asiaticus str. psy62] Length = 395 Score = 28.1 bits (61), Expect = 0.67, Method: Compositional matrix adjust. Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 5/29 (17%) Query: 375 PRSLSRLKIGRG-----EPKDIAVIRDGI 398 PRS+S + G G EP++IA+I DGI Sbjct: 68 PRSISSIFFGGGTPSLIEPQNIALILDGI 96 >gi|254780539|ref|YP_003064952.1| ABC transporter, membrane spanning protein (iron) [Candidatus Liberibacter asiaticus str. psy62] Length = 273 Score = 26.6 bits (57), Expect = 2.1, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 7 SPQKLYSEQIDLEENLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCL 66 SP +Y E I L L S Q + I + + +V+ + DF LFFD+ S + Sbjct: 113 SPSAVYVENIFLGNTLSMSRSDTIQVL-IITFSVACIVYMKWKDFVLLFFDERHAHSVGI 171 Query: 67 GITLTK 72 + L K Sbjct: 172 NVKLLK 177 >gi|254780772|ref|YP_003065185.1| surface antigen (D15) [Candidatus Liberibacter asiaticus str. psy62] Length = 781 Score = 25.8 bits (55), Expect = 3.1, Method: Compositional matrix adjust. Identities = 13/42 (30%), Positives = 20/42 (47%) Query: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSA 295 +V+K A Y + V+ P PER ++ F+DSA Sbjct: 675 RVDKKYAIGGKIYSSASAAVSFPMPLVPERAGLRGAFFVDSA 716 >537021.9.peg.42_1 Length = 44 Score = 25.8 bits (55), Expect = 3.3, Method: Composition-based stats. Identities = 10/20 (50%), Positives = 16/20 (80%) Query: 115 LEAKKRGNKSLVRRNVVRLV 134 L+ + RGNK + R+NV+R+V Sbjct: 13 LKLRHRGNKVVRRKNVIRIV 32 >gi|254780365|ref|YP_003064778.1| UTP-glucose-1-phosphate uridylyltransferase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 299 Score = 25.4 bits (54), Expect = 4.0, Method: Compositional matrix adjust. Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 413 LPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSK 472 +P+E+ V++ + +E+ L + L+D + R G ++D D + +SLR ++K Sbjct: 28 IPKEMLAIVDR-PVIQYVIEEALEAGLTDFVFVTGRGKGLIKDYFDIQFELEQSLRKRNK 86 Query: 473 R 473 + Sbjct: 87 K 87 >gi|254780968|ref|YP_003065381.1| hypothetical protein CLIBASIA_04345 [Candidatus Liberibacter asiaticus str. psy62] Length = 106 Score = 25.0 bits (53), Expect = 6.0, Method: Composition-based stats. Identities = 11/27 (40%), Positives = 15/27 (55%) Query: 350 SINFFIQNPILINPIQKILKSSPDVPR 376 S+N IQN I N + +K +P PR Sbjct: 4 SVNSIIQNEIKKNDVVLFMKGTPTSPR 30 >gi|254781089|ref|YP_003065502.1| hypothetical protein CLIBASIA_04955 [Candidatus Liberibacter asiaticus str. psy62] Length = 80 Score = 24.6 bits (52), Expect = 8.2, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 23/55 (41%) Query: 790 LQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFEKLYH 844 L +S+ + V GI+ + YG GK+ ++S DI F + H Sbjct: 24 LALSNDPVSVFLKSDVFDGISKNQYGFFTGKIKVDAQFILSEKMDIPHVFLPMVH 78 >gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 596 Score = 24.3 bits (51), Expect = 8.8, Method: Compositional matrix adjust. Identities = 10/19 (52%), Positives = 13/19 (68%) Query: 649 SGKLWLLTGPNMGGKSTFL 667 SGK+ L GP+ GKST + Sbjct: 378 SGKMTALVGPSGSGKSTII 396 >gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus Liberibacter asiaticus str. psy62] Length = 227 Score = 24.3 bits (51), Expect = 9.2, Method: Compositional matrix adjust. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 719 ETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELT 776 + +I N+ +IL + G L ++ ++YL + L+ATH H+L Sbjct: 153 QRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLA 210 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.317 0.133 0.371 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 559,122 Number of Sequences: 1233 Number of extensions: 23391 Number of successful extensions: 80 Number of sequences better than 100.0: 16 Number of HSP's better than 100.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 68 Number of HSP's gapped (non-prelim): 19 length of query: 920 length of database: 328,796 effective HSP length: 82 effective length of query: 838 effective length of database: 227,690 effective search space: 190804220 effective search space used: 190804220 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 43 (21.2 bits)