HHsearch alignment for GI: 254780751 and conserved domain: COG0539

>COG0539 RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis].
Probab=97.83  E-value=3.4e-05  Score=55.20  Aligned_cols=40  Identities=25%  Similarity=0.465  Sum_probs=31.5

Q ss_pred             CCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCC
Q ss_conf             346042878798997836388231353278977130222137
Q gi|254780751|r   34 HKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH   75 (723)
Q Consensus        34 ~~~~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~   75 (723)
T Consensus        16 ~~~~~~G~vV~G~Vv~i~~~~--v~Vdig~Kseg~ip~~E~~   55 (541)
T COG0539          16 DEEFEPGDVVKGTVVSIEKDG--VLVDIGGKSEGVIPISEFS   55 (541)
T ss_pred             HHCCCCCCEEEEEEEEEECCE--EEEEECCCCCCEEEHHHCC
T ss_conf             311688878999999993884--9998367615576889805