HHsearch alignment for GI: 254780751 and conserved domain: COG0539
>COG0539 RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis].
Probab=97.83 E-value=3.4e-05 Score=55.20 Aligned_cols=40 Identities=25% Similarity=0.465 Sum_probs=31.5
Q ss_pred CCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCC
Q ss_conf 346042878798997836388231353278977130222137
Q gi|254780751|r 34 HKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75 (723)
Q Consensus 34 ~~~~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~ 75 (723)
T Consensus 16 ~~~~~~G~vV~G~Vv~i~~~~--v~Vdig~Kseg~ip~~E~~ 55 (541)
T COG0539 16 DEEFEPGDVVKGTVVSIEKDG--VLVDIGGKSEGVIPISEFS 55 (541)
T ss_pred HHCCCCCCEEEEEEEEEECCE--EEEEECCCCCCEEEHHHCC
T ss_conf 311688878999999993884--9998367615576889805