HHsearch alignment for GI: 254780751 and conserved domain: COG1098
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis].
Probab=97.84 E-value=1.6e-05 Score=57.38 Aligned_cols=79 Identities=24% Similarity=0.348 Sum_probs=63.4
Q ss_pred CCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 42878798997836388231353278977130222137121028988999999988863111110000000111223344
Q gi|254780751|r 38 IKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPND 117 (723)
Q Consensus 38 ~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~~ip~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (723)
T Consensus 4 kvG~~l~GkItgI~~y--GAFV~l~~g~tGLVHISEIa~~fVk------------------------------------- 44 (129)
T COG1098 4 KVGSKLKGKITGITPY--GAFVELEGGKTGLVHISEIADGFVK------------------------------------- 44 (129)
T ss_pred CCCCEEEEEEEEEEEC--CEEEEECCCCCCEEEEHHHHHHHHH-------------------------------------
T ss_conf 3464678889756743--3489823997314883575443677-------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 43344542222334455433222234321122111211000012234444213310688857999840333234564101
Q gi|254780751|r 118 HSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVT 197 (723)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lk~gq~ilVQV~ke~~~~Kga~lT 197 (723)
T Consensus 45 ---------------------------------------------------dI~d~L~vG~eV~vKVl~ide-------~ 66 (129)
T COG1098 45 ---------------------------------------------------DIHDHLKVGQEVKVKVLDIDE-------N 66 (129)
T ss_pred ---------------------------------------------------HHHHHHCCCCEEEEEEEEECC-------C
T ss_conf ---------------------------------------------------399884278879999972146-------8
Q ss_pred CCCCCCCCCEEECCCC
Q ss_conf 2334576523442278
Q gi|254780751|r 198 TYLSLAGRYSVLMPNT 213 (723)
Q Consensus 198 ~~isl~Gry~Vl~P~~ 213 (723)
T Consensus 67 GKisLSIr~~~e~pe~ 82 (129)
T COG1098 67 GKISLSIRKLEEEPEK 82 (129)
T ss_pred CCCCEEHHHHHHCCCC
T ss_conf 9703356876647443