HHsearch alignment for GI: 254780751 and conserved domain: COG1098

>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis].
Probab=97.84  E-value=1.6e-05  Score=57.38  Aligned_cols=79  Identities=24%  Similarity=0.348  Sum_probs=63.4

Q ss_pred             CCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             42878798997836388231353278977130222137121028988999999988863111110000000111223344
Q gi|254780751|r   38 IKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPND  117 (723)
Q Consensus        38 ~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~~ip~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (723)
T Consensus         4 kvG~~l~GkItgI~~y--GAFV~l~~g~tGLVHISEIa~~fVk-------------------------------------   44 (129)
T COG1098           4 KVGSKLKGKITGITPY--GAFVELEGGKTGLVHISEIADGFVK-------------------------------------   44 (129)
T ss_pred             CCCCEEEEEEEEEEEC--CEEEEECCCCCCEEEEHHHHHHHHH-------------------------------------
T ss_conf             3464678889756743--3489823997314883575443677-------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf             43344542222334455433222234321122111211000012234444213310688857999840333234564101
Q gi|254780751|r  118 HSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVT  197 (723)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lk~gq~ilVQV~ke~~~~Kga~lT  197 (723)
T Consensus        45 ---------------------------------------------------dI~d~L~vG~eV~vKVl~ide-------~   66 (129)
T COG1098          45 ---------------------------------------------------DIHDHLKVGQEVKVKVLDIDE-------N   66 (129)
T ss_pred             ---------------------------------------------------HHHHHHCCCCEEEEEEEEECC-------C
T ss_conf             ---------------------------------------------------399884278879999972146-------8


Q ss_pred             CCCCCCCCCEEECCCC
Q ss_conf             2334576523442278
Q gi|254780751|r  198 TYLSLAGRYSVLMPNT  213 (723)
Q Consensus       198 ~~isl~Gry~Vl~P~~  213 (723)
T Consensus        67 GKisLSIr~~~e~pe~   82 (129)
T COG1098          67 GKISLSIRKLEEEPEK   82 (129)
T ss_pred             CCCCEEHHHHHHCCCC
T ss_conf             9703356876647443