HHsearch alignment for GI: 254780751 and conserved domain: COG2996

>COG2996 Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only].

Probab=91.82  E-value=1  Score=24.16  Aligned_cols=54  Identities=20%  Similarity=0.247  Sum_probs=40.4

Q ss_pred             ECCEEEEEEECCCCCC----------CCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCC
Q ss_conf             8998999996073346----------042878798997836388231353278977130222137
Q gi|254780751|r   21 RDNRVEELDFESEHKK----------QIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH   75 (723)
Q Consensus        21 e~g~l~e~~~e~~~~~----------~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~   75 (723)
T Consensus        45 evGdev~vFiY~D~~~rl~aTt~~p~~tvg~~g~~~Vv~v~~~lG-aFlD~Gl~KDl~vp~~elp  108 (287)
T COG2996          45 EVGDEVTVFIYVDSEDRLIATTREPKATVGEYGWLKVVEVNKDLG-AFLDWGLPKDLLVPLDELP  108 (287)
T ss_pred             CCCCEEEEEEEECCCCCEEHEEECCEEEECCEEEEEEEEECCCCC-EEEECCCCCCEEEEHHHCC
T ss_conf             137689999998887763010104137405323799998737751-5896598700361625364