HHsearch alignment for GI: 254780751 and conserved domain: PRK03987
>PRK03987 translation initiation factor IF-2 subunit alpha; Validated.
Probab=98.12 E-value=1.2e-05 Score=58.37 Aligned_cols=125 Identities=18% Similarity=0.298 Sum_probs=82.8
Q ss_pred CCCCCEEEEEEEEECCCCCEEEEEEC--CCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 04287879899783638823135327--8977130222137121028988999999988863111110000000111223
Q gi|254780751|r 37 QIKGNIYLAKVTRVEPSLQAAFVDYG--GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTI 114 (723)
Q Consensus 37 ~~~GnIY~G~V~~V~p~lqAAFVdiG--~~k~gFL~~~ei~~~y~~ip~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (723)
T Consensus 6 Pe~g~~v~~~V~~i~~--~Ga~v~l~ey~~~eG~i~isEis~~~v----------------------------------- 48 (262)
T PRK03987 6 PEEGELVVGTVKEVKD--FGAFVTLDEYPGKEGFIHISEVASGWV----------------------------------- 48 (262)
T ss_pred CCCCCEEEEEEEEEEC--CEEEEEECCCCCCCEEEEHHHCCHHHH-----------------------------------
T ss_conf 9999889999999956--679999356599316788798346775-----------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCC
Q ss_conf 34443344542222334455433222234321122111211000012234444213310688857999840333234564
Q gi|254780751|r 115 PNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGA 194 (723)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lk~gq~ilVQV~ke~~~~Kga 194 (723)
T Consensus 49 -----------------------------------------------------~~i~d~~k~G~~v~~kVi~vd------ 69 (262)
T PRK03987 49 -----------------------------------------------------KNIRDYVKEGQKVVCKVIRVD------ 69 (262)
T ss_pred -----------------------------------------------------HCHHHHCCCCCEEEEEEEEEC------
T ss_conf -----------------------------------------------------199985158988999999883------
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCC--CCHHHHHHHHHH-HHHH
Q ss_conf 1012334576523442278875124204688689999999998630025871699850455--757999999999-9999
Q gi|254780751|r 195 AVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGAS--RTKIEIKRDFEY-LMRL 271 (723)
Q Consensus 195 ~lT~~isl~Gry~Vl~P~~~~~~~iSrki~~~~~r~~l~~~~~~~~~~~~~G~IiRT~a~~--~~~~~l~~d~~~-L~~~ 271 (723)
T Consensus 70 ----------------~~kg-~IdLS~k~Vs~~e~~~~~~~~k~~k---~a~~il~~va~~~~~~~ee~~~~i~~~l~~~ 129 (262)
T PRK03987 70 ----------------PKKG-HIDLSLKRVNEHQRREKIQEWKNEQ---KAEKLLELAAEKLGKDLEEAWEEVGYKLEEE 129 (262)
T ss_pred ----------------CCCC-EEEEECCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf ----------------8788-7871104499899999999999999---9999999999982989899999999999998
Q ss_pred HHHHHH
Q ss_conf 998776
Q gi|254780751|r 272 WDNVRE 277 (723)
Q Consensus 272 w~~i~~ 277 (723)
T Consensus 130 yg~~y~ 135 (262)
T PRK03987 130 FGDLYD 135 (262)
T ss_pred HCCHHH
T ss_conf 560989