HHsearch alignment for GI: 254780751 and conserved domain: PRK09202

>PRK09202 nusA transcription elongation factor NusA; Validated.

Probab=92.37  E-value=0.46  Score=26.47  Aligned_cols=52  Identities=19%  Similarity=0.206  Sum_probs=34.9

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHCCCCCCEEECCCCCHHHHHHHH-HHHHHHCCCCHHHH
Q ss_conf             4322123456458888887523766311110353203667888-98763101211220
Q gi|254780751|r  282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF-MKLLMPSYARIVRQ  338 (723)
Q Consensus       282 ~~~p~li~~~~~~~~~~ird~~~~~~~~i~vd~~~~~~~~~~~-~~~~~p~~~~~v~~  338 (723)
T Consensus       246 DpVGAcVG~rGsRI~~I~~EL~gEkIDIi~~s~d~-----~~fi~nAlsPA~v~~V~i  298 (428)
T PRK09202        246 DPVGACVGMRGSRIQAISNELNGEKIDIILWSDDP-----AQFIINALSPAEVSSIVV  298 (428)
T ss_pred             CCCEEEECCCCCCHHHHHHHHCCCEEEEEECCCCH-----HHHHHHHCCCCCCEEEEE
T ss_conf             85137777886429999987467768999678888-----999998179421218997