HHsearch alignment for GI: 254780751 and conserved domain: PRK11642

>PRK11642 exoribonuclease R; Provisional.
Probab=92.68  E-value=0.26  Score=28.27  Aligned_cols=90  Identities=16%  Similarity=0.172  Sum_probs=45.8

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEEEEECCCC---
Q ss_conf             35320366788898763101211220134-42035677699999998422214367864998328806999823755---
Q gi|254780751|r  313 SGEKGYREAKDFMKLLMPSYARIVRQYED-PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR---  388 (723)
Q Consensus       313 d~~~~~~~~~~~~~~~~p~~~~~v~~~~~-~~~lf~~y~ie~~i~~~~~~~V~L~sGG~lvIe~TEALt~IDVNSG~---  388 (723)
T Consensus       378 ~arLTY~~v~~il~g~-~~~~---~~~~~~~~~L~~L~~l~~~L~~~R~------~rGai~fd~~E~~~~ld~~g~i~~i  447 (813)
T PRK11642        378 HARLTYTKVWHILQGD-QDLR---EQYAPLVKHLEELHNLYKVLDKARE------ERGGISFESEEAKFIFNAERRIERI  447 (813)
T ss_pred             CCEECHHHHHHHHHCC-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHH------HCCCCCCCCCCCEEEECCCCCCCCE
T ss_conf             8362399999998188-5444---4556799999999999999999999------7789665677644897788873424


Q ss_pred             -----CCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             -----444555114799999999999999
Q gi|254780751|r  389 -----STREHCIEDTALQTNLEAAEEIAR  412 (723)
Q Consensus       389 -----~~~~~~~e~t~l~tNleAA~EIaR  412 (723)
T Consensus       448 ~~~~r~~ah~LIEE~Ml~AN~~vA~~l~~  476 (813)
T PRK11642        448 EQTQRNDAHKLIEECMILANISAARFVEK  476 (813)
T ss_pred             EECCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             76223505678999999999999999997