HHsearch alignment for GI: 254780751 and conserved domain: PRK11642
>PRK11642 exoribonuclease R; Provisional.
Probab=92.68 E-value=0.26 Score=28.27 Aligned_cols=90 Identities=16% Similarity=0.172 Sum_probs=45.8
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEEEEECCCC---
Q ss_conf 35320366788898763101211220134-42035677699999998422214367864998328806999823755---
Q gi|254780751|r 313 SGEKGYREAKDFMKLLMPSYARIVRQYED-PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR--- 388 (723)
Q Consensus 313 d~~~~~~~~~~~~~~~~p~~~~~v~~~~~-~~~lf~~y~ie~~i~~~~~~~V~L~sGG~lvIe~TEALt~IDVNSG~--- 388 (723)
T Consensus 378 ~arLTY~~v~~il~g~-~~~~---~~~~~~~~~L~~L~~l~~~L~~~R~------~rGai~fd~~E~~~~ld~~g~i~~i 447 (813)
T PRK11642 378 HARLTYTKVWHILQGD-QDLR---EQYAPLVKHLEELHNLYKVLDKARE------ERGGISFESEEAKFIFNAERRIERI 447 (813)
T ss_pred CCEECHHHHHHHHHCC-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHH------HCCCCCCCCCCCEEEECCCCCCCCE
T ss_conf 8362399999998188-5444---4556799999999999999999999------7789665677644897788873424
Q ss_pred -----CCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf -----444555114799999999999999
Q gi|254780751|r 389 -----STREHCIEDTALQTNLEAAEEIAR 412 (723)
Q Consensus 389 -----~~~~~~~e~t~l~tNleAA~EIaR 412 (723)
T Consensus 448 ~~~~r~~ah~LIEE~Ml~AN~~vA~~l~~ 476 (813)
T PRK11642 448 EQTQRNDAHKLIEECMILANISAARFVEK 476 (813)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 76223505678999999999999999997