HHsearch alignment for GI: 254780751 and conserved domain: PTZ00162
>PTZ00162 RNA polymerase II subunit 7; Provisional.
Probab=90.75 E-value=1.3 Score=23.45 Aligned_cols=63 Identities=24% Similarity=0.230 Sum_probs=49.2
Q ss_pred CEEEEEEEECCEEEEEEECCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCC
Q ss_conf 607999998998999996073346042878798997836388231353278977130222137121
Q gi|254780751|r 13 EETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDY 78 (723)
Q Consensus 13 ~e~Rvav~e~g~l~e~~~e~~~~~~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y 78 (723)
T Consensus 55 ~~G~I~~gdG~v~~~V~f~aivfkP~~~EVvdg~V~~v~~--~G~fv~~GPl~-~fv~~s~i~~d~ 117 (170)
T PTZ00162 55 EPGRVQDGTGMIVVNVKYQAIVFKPFKDEVLDAIVTDVNK--LGFFAQAGPLK-IFVSRTAIPPNF 117 (170)
T ss_pred CCCEEEECCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEC--CEEEEEECCEE-EEEEHHHCCCCC
T ss_conf 5797995898699999999999933679899999999964--07999912808-998989999864