HHsearch alignment for GI: 254780751 and conserved domain: cd04473
>cd04473 S1_RecJ_like S1_RecJ_like: The S1 domain of the archaea-specific RecJ-like exonuclease. The function of this family is not fully understood. In Escherichia coli, RecJ degrades single-stranded DNA in the 5'-3' direction and participates in homologous recombination and mismatch repair.
Probab=97.87 E-value=3.2e-05 Score=55.39 Aligned_cols=40 Identities=23% Similarity=0.345 Sum_probs=34.8
Q ss_pred CCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCC
Q ss_conf 460428787989978363882313532789771302221371
Q gi|254780751|r 35 KKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHP 76 (723)
Q Consensus 35 ~~~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~ 76 (723)
T Consensus 12 ~dlevG~~y~G~V~~v~~--fGaFV~l~~~~~GLiHiS~l~~ 51 (77)
T cd04473 12 EDLEVGKLYKGKVNGVAK--YGVFVDLNDHVRGLIHRSNLLR 51 (77)
T ss_pred CCCCCCCEEEEEEEEEEE--CCEEEECCCCCEEEEEEHHCCC
T ss_conf 035239999999988966--2889992699879689316668