HHsearch alignment for GI: 254780751 and conserved domain: cd04473

>cd04473 S1_RecJ_like S1_RecJ_like: The S1 domain of the archaea-specific RecJ-like exonuclease. The function of this family is not fully understood. In Escherichia coli, RecJ degrades single-stranded DNA in the 5'-3' direction and participates in homologous recombination and mismatch repair.
Probab=97.87  E-value=3.2e-05  Score=55.39  Aligned_cols=40  Identities=23%  Similarity=0.345  Sum_probs=34.8

Q ss_pred             CCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCC
Q ss_conf             460428787989978363882313532789771302221371
Q gi|254780751|r   35 KKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHP   76 (723)
Q Consensus        35 ~~~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~   76 (723)
T Consensus        12 ~dlevG~~y~G~V~~v~~--fGaFV~l~~~~~GLiHiS~l~~   51 (77)
T cd04473          12 EDLEVGKLYKGKVNGVAK--YGVFVDLNDHVRGLIHRSNLLR   51 (77)
T ss_pred             CCCCCCCEEEEEEEEEEE--CCEEEECCCCCEEEEEEHHCCC
T ss_conf             035239999999988966--2889992699879689316668