HHsearch alignment for GI: 254780751 and conserved domain: pfam00575
>pfam00575 S1 S1 RNA binding domain. The S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure.
Probab=97.95 E-value=1.8e-05 Score=57.06 Aligned_cols=40 Identities=40% Similarity=0.635 Sum_probs=36.0
Q ss_pred CCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCC
Q ss_conf 042878798997836388231353278977130222137121
Q gi|254780751|r 37 QIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDY 78 (723)
Q Consensus 37 ~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y 78 (723)
T Consensus 2 ~~~G~iv~G~V~~i~~--~G~fV~l~~~~~g~v~~s~ls~~~ 41 (74)
T pfam00575 2 PEEGDVVKGTVTRVTK--GGAFVDLGNGVEGFIPISEISDDR 41 (74)
T ss_pred CCCCCEEEEEEEEEEC--CEEEEEECCCCEEEEEHHHCCCCC
T ss_conf 8899999999999987--759999789979999844613655