HHsearch alignment for GI: 254780751 and conserved domain: pfam00575

>pfam00575 S1 S1 RNA binding domain. The S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure.
Probab=97.95  E-value=1.8e-05  Score=57.06  Aligned_cols=40  Identities=40%  Similarity=0.635  Sum_probs=36.0

Q ss_pred             CCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCC
Q ss_conf             042878798997836388231353278977130222137121
Q gi|254780751|r   37 QIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDY   78 (723)
Q Consensus        37 ~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y   78 (723)
T Consensus         2 ~~~G~iv~G~V~~i~~--~G~fV~l~~~~~g~v~~s~ls~~~   41 (74)
T pfam00575         2 PEEGDVVKGTVTRVTK--GGAFVDLGNGVEGFIPISEISDDR   41 (74)
T ss_pred             CCCCCEEEEEEEEEEC--CEEEEEECCCCEEEEEHHHCCCCC
T ss_conf             8899999999999987--759999789979999844613655