HHsearch alignment of GI: 254780751 and MMDB domain: 1go3_E_81-187
>1go3_E (E:81-187) DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii}
Probab=97.78 E-value=5.3e-05 Score=53.43 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=35.5
Q ss_pred CCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCCC
Q ss_conf 287879899783638823135327897713022213712102
Q gi|254780751|r 39 KGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQ 80 (723)
Q Consensus 39 ~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~~ 80 (723)
+|.+|.|+|++|.|. +|||+|+ +..||+|++++..+||.
T Consensus 1 VG~~~~g~V~~i~~~--G~fV~l~-g~~Glv~is~l~~~~~~ 39 (107)
T 1go3_E 1 MYELIEGEVVDVVEF--GSFVRLG-PLDGLIHVSQIMDDYVS 39 (107)
T ss_dssp TTCEEEEEEEEEETT--EEEEECS-SSEEEEEGGGSCSSCEE
T ss_pred CCCEEEEEEEEEEEE--EEEEEEC-CCEEEEEEHHCCCCCEE
T ss_conf 898999999999732--9999955-80599981132898586