HHsearch alignment of GI: 254780751 and MMDB domain: 1hh2_P_129-215

>1hh2_P (P:129-215) NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima}
Probab=97.26  E-value=0.00069  Score=45.68  Aligned_cols=39  Identities=31%  Similarity=0.319  Sum_probs=33.5

Q ss_pred             CCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCC
Q ss_conf             604287879899783638823135327897713022213712
Q gi|254780751|r   36 KQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPD   77 (723)
Q Consensus        36 ~~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~   77 (723)
                      ....|.|+.|+|.++.+.  +||||+| +-.||||.+++.|.
T Consensus         3 ~~~~G~iv~g~V~~i~~~--G~~V~l~-~~~g~ip~~e~~~~   41 (87)
T 1hh2_P            3 SELKGTVTTAEVIRVMGE--WADIRIG-KLETRLPKKEWIPG   41 (87)
T ss_dssp             TCCTTCEEEEEEEEECSS--EEEEEET-TEEEEEEGGGSCTT
T ss_pred             HHHCCCEEEEEEEEEECC--CEEEECC-CEEEEECHHHCCCC
T ss_conf             862681899999999614--3599618-61687177886986