HHsearch alignment of GI: 254780751 and MMDB domain: 1hh2_P_129-215
>1hh2_P (P:129-215) NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima}
Probab=97.26 E-value=0.00069 Score=45.68 Aligned_cols=39 Identities=31% Similarity=0.319 Sum_probs=33.5
Q ss_pred CCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCC
Q ss_conf 604287879899783638823135327897713022213712
Q gi|254780751|r 36 KQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPD 77 (723)
Q Consensus 36 ~~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~ 77 (723)
....|.|+.|+|.++.+. +||||+| +-.||||.+++.|.
T Consensus 3 ~~~~G~iv~g~V~~i~~~--G~~V~l~-~~~g~ip~~e~~~~ 41 (87)
T 1hh2_P 3 SELKGTVTTAEVIRVMGE--WADIRIG-KLETRLPKKEWIPG 41 (87)
T ss_dssp TCCTTCEEEEEEEEECSS--EEEEEET-TEEEEEEGGGSCTT
T ss_pred HHHCCCEEEEEEEEEECC--CEEEECC-CEEEEECHHHCCCC
T ss_conf 862681899999999614--3599618-61687177886986