HHsearch alignment of GI: 254780751 and MMDB domain: 2cqo_A_
>2cqo_A (A:) Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.84 E-value=7.4e-05 Score=52.40 Aligned_cols=91 Identities=15% Similarity=0.167 Sum_probs=66.7
Q ss_pred CCCCCCCCCCCEEEEEEEEECCCCCEEEEEEC-CCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 07334604287879899783638823135327-89771302221371210289889999999888631111100000001
Q gi|254780751|r 31 ESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG-GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTH 109 (723)
Q Consensus 31 e~~~~~~~~GnIY~G~V~~V~p~lqAAFVdiG-~~k~gFL~~~ei~~~y~~ip~~d~~~l~~~~~~~~~~~~~~~~~~~~ 109 (723)
+.......+|.||.|+|.+|.+. .|||+++ .+..||+|++|+.++|+.
T Consensus 14 ~~~~~~~~~G~vv~g~V~~I~~~--G~fV~l~~~~~~Gli~~sels~~~~~----------------------------- 62 (119)
T 2cqo_A 14 ETMENLPALYTIFQGEVAMVTDY--GAFIKIPGCRKQGLVHRTHMSSCRVD----------------------------- 62 (119)
T ss_dssp CCSCCSCCTTCEEEEEEEEEETT--EEEEECTTCSSCEEEEHHHHCSSCCS-----------------------------
T ss_pred CHHHCCCCCCCEEEEEEEEEECC--EEEEEECCCCEEEEEEEHHCCCCCCC-----------------------------
T ss_conf 11342876784799999999556--88999379743578610110455667-----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCC
Q ss_conf 11223344433445422223344554332222343211221112110000122344442133106888579998403332
Q gi|254780751|r 110 GDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEER 189 (723)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lk~gq~ilVQV~ke~~ 189 (723)
.+.+.++.||.|-|.|+.-..
T Consensus 63 -----------------------------------------------------------~~~~~~~vG~~v~v~V~~vd~ 83 (119)
T 2cqo_A 63 -----------------------------------------------------------KPSEIVDVGDKVWVKLIGREM 83 (119)
T ss_dssp -----------------------------------------------------------CHHHHCCTTCEEEEEEEEEEE
T ss_pred -----------------------------------------------------------CHHHEECCCCEEEEEEEEEEC
T ss_conf -----------------------------------------------------------987802799999999999977
Q ss_pred CCCCCC--CCCCCCCCCCCEEECC
Q ss_conf 345641--0123345765234422
Q gi|254780751|r 190 GNKGAA--VTTYLSLAGRYSVLMP 211 (723)
Q Consensus 190 ~~Kga~--lT~~isl~Gry~Vl~P 211 (723)
.++.-+ ||..-..+.....+.+
T Consensus 84 ~~~~~~vsLs~k~~~~~~~~~~~~ 107 (119)
T 2cqo_A 84 KNDRIKVSLSMKVVNQGTGKDLDP 107 (119)
T ss_dssp CSSCEEEEEESTTBCSSSCCBSCT
T ss_pred CCCCCEEEEEEEECCCCCCHHCCC
T ss_conf 678648873601567796034285