HHsearch alignment of GI: 254780751 and MMDB domain: 2cqo_A_

>2cqo_A (A:) Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.84  E-value=7.4e-05  Score=52.40  Aligned_cols=91  Identities=15%  Similarity=0.167  Sum_probs=66.7

Q ss_pred             CCCCCCCCCCCEEEEEEEEECCCCCEEEEEEC-CCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             07334604287879899783638823135327-89771302221371210289889999999888631111100000001
Q gi|254780751|r   31 ESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG-GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTH  109 (723)
Q Consensus        31 e~~~~~~~~GnIY~G~V~~V~p~lqAAFVdiG-~~k~gFL~~~ei~~~y~~ip~~d~~~l~~~~~~~~~~~~~~~~~~~~  109 (723)
                      +.......+|.||.|+|.+|.+.  .|||+++ .+..||+|++|+.++|+.                             
T Consensus        14 ~~~~~~~~~G~vv~g~V~~I~~~--G~fV~l~~~~~~Gli~~sels~~~~~-----------------------------   62 (119)
T 2cqo_A           14 ETMENLPALYTIFQGEVAMVTDY--GAFIKIPGCRKQGLVHRTHMSSCRVD-----------------------------   62 (119)
T ss_dssp             CCSCCSCCTTCEEEEEEEEEETT--EEEEECTTCSSCEEEEHHHHCSSCCS-----------------------------
T ss_pred             CHHHCCCCCCCEEEEEEEEEECC--EEEEEECCCCEEEEEEEHHCCCCCCC-----------------------------
T ss_conf             11342876784799999999556--88999379743578610110455667-----------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCC
Q ss_conf             11223344433445422223344554332222343211221112110000122344442133106888579998403332
Q gi|254780751|r  110 GDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEER  189 (723)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lk~gq~ilVQV~ke~~  189 (723)
                                                                                 .+.+.++.||.|-|.|+.-..
T Consensus        63 -----------------------------------------------------------~~~~~~~vG~~v~v~V~~vd~   83 (119)
T 2cqo_A           63 -----------------------------------------------------------KPSEIVDVGDKVWVKLIGREM   83 (119)
T ss_dssp             -----------------------------------------------------------CHHHHCCTTCEEEEEEEEEEE
T ss_pred             -----------------------------------------------------------CHHHEECCCCEEEEEEEEEEC
T ss_conf             -----------------------------------------------------------987802799999999999977


Q ss_pred             CCCCCC--CCCCCCCCCCCEEECC
Q ss_conf             345641--0123345765234422
Q gi|254780751|r  190 GNKGAA--VTTYLSLAGRYSVLMP  211 (723)
Q Consensus       190 ~~Kga~--lT~~isl~Gry~Vl~P  211 (723)
                      .++.-+  ||..-..+.....+.+
T Consensus        84 ~~~~~~vsLs~k~~~~~~~~~~~~  107 (119)
T 2cqo_A           84 KNDRIKVSLSMKVVNQGTGKDLDP  107 (119)
T ss_dssp             CSSCEEEEEESTTBCSSSCCBSCT
T ss_pred             CCCCCEEEEEEEECCCCCCHHCCC
T ss_conf             678648873601567796034285