HHsearch alignment of GI: 254780751 and MMDB domain: 2ja9_A_1-90

>2ja9_A (A:1-90) Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae}

Probab=97.90  E-value=3.9e-05  Score=54.33  Aligned_cols=41  Identities=5%  Similarity=-0.075  Sum_probs=37.1

Q ss_pred             CCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCC
Q ss_conf             0428787989978363882313532789771302221371210
Q gi|254780751|r   37 QIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYY   79 (723)
Q Consensus        37 ~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~   79 (723)
                      ..+|.||.|+|++|.+.  +|||+||.+..||||.+|+.++|+
T Consensus         5 pk~G~~v~G~V~~v~~~--g~~V~l~~~~~g~l~~s~~~~~~~   45 (90)
T 2ja9_A            5 PSVNDFVIGVIIGTFSD--SYKVSLQNFSSSVSLSYMAFPNAS   45 (90)
T ss_dssp             CCTTCEEEEEEEEECSS--EEEEESSTTSCCEEEETTSSTTCC
T ss_pred             CCCCCEEEEEEEEECCC--EEEEEECCCCHHHHCCCCCCCCCC
T ss_conf             99989999999897288--089993897365407655466612