HHsearch alignment of GI: 254780751 and MMDB domain: 2khi_A_

>2khi_A (A:) 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=98.19  E-value=4.6e-06  Score=60.75  Aligned_cols=96  Identities=11%  Similarity=0.106  Sum_probs=74.3

Q ss_pred             EECCEEEEEEECCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             98998999996073346042878798997836388231353278977130222137121028988999999988863111
Q gi|254780751|r   20 LRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTD   99 (723)
Q Consensus        20 ~e~g~l~e~~~e~~~~~~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~~ip~~d~~~l~~~~~~~~~~   99 (723)
                      .-.-+..+..++..-....+|.||.|+|++|.|.  ++||++|.+-.||||++|+..+++.                   
T Consensus        11 ~~s~k~~~~~~~~~~~~~~~G~iv~G~V~~v~~~--G~fV~l~~~~~g~i~~~els~~~~~-------------------   69 (115)
T 2khi_A           11 SSGLVPRGSHWVAIAKRYPEGTKLTGRVTNLTDY--GCFVEIEEGVEGLVHVSEMDWTNKN-------------------   69 (115)
T ss_dssp             ----------CCCSSCSSCSSCEEEEEEEEEETT--EEEEECSTTCEEEEETTSSSCSSTT-------------------
T ss_pred             CCCCCCCCCCHHHHHHHCCCCCEEEEEEEEEECC--EEEEEECCCCCEEEEEEEECCCCCC-------------------
T ss_conf             2474447997899996589989999999999687--5999989857223787631344422-------------------


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCE
Q ss_conf             11000000011122334443344542222334455433222234321122111211000012234444213310688857
Q gi|254780751|r  100 SEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI  179 (723)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lk~gq~  179 (723)
                                                                                          ..+.++++.||.
T Consensus        70 --------------------------------------------------------------------~~~~~~~~~G~~   81 (115)
T 2khi_A           70 --------------------------------------------------------------------IHPSKVVNVGDV   81 (115)
T ss_dssp             --------------------------------------------------------------------CSSTTTCCTTCE
T ss_pred             --------------------------------------------------------------------CCCEEEEECCCE
T ss_conf             --------------------------------------------------------------------232048843866


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             9998403332345641012334576
Q gi|254780751|r  180 LLVQIVKEERGNKGAAVTTYLSLAG  204 (723)
Q Consensus       180 ilVQV~ke~~~~Kga~lT~~isl~G  204 (723)
                      |.|.|.+--..++-..||..-..+.
T Consensus        82 v~v~V~~vd~~~~ri~lS~k~~~~~  106 (115)
T 2khi_A           82 VEVMVLDIDEERRRISLGLKQCKAN  106 (115)
T ss_dssp             EEEEEEEEETTTTEEEECCCCCCSS
T ss_pred             EEEEEEEEECCCCEEEEEEEECCCC
T ss_conf             9999999989999999998765409