HHsearch results for GI: 254780751 and protein with PDBid: 1go3_E

>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=95.86  E-value=0.03  Score=33.25  Aligned_cols=56  Identities=20%  Similarity=0.209  Sum_probs=44.8

Q ss_pred             CCEEEEEEECCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCCC
Q ss_conf             99899999607334604287879899783638823135327897713022213712102
Q gi|254780751|r   22 DNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQ   80 (723)
Q Consensus        22 ~g~l~e~~~e~~~~~~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~~   80 (723)
                      +......-++-.--+..+|.+|-|+|++|-.  .++||.+|. -.||+|.+.+.+|||.
T Consensus        64 g~~~~~v~f~~~v~~p~~gev~~g~V~~v~~--~Gifv~i~~-~~~~~~~~~~~~d~~~  119 (187)
T 1go3_E           64 GSAYHPVVFETLVYIPEMYELIEGEVVDVVE--FGSFVRLGP-LDGLIHVSQIMDDYVS  119 (187)
T ss_dssp             CSEEEEEEEEEEEECCCTTCEEEEEEEEEET--TEEEEECSS-SEEEEEGGGSCSSCEE
T ss_pred             CCEEEEEEEEEEEEECCCCCEEEEEEEEEEE--EEEEEEECC-CCCCCCHHHCCCCCEE
T ss_conf             8679999999999954689899999998872--048999458-4430107783897466