HHsearch results for GI: 254780751 and protein with PDBid: 2bx2_L
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=100.00 E-value=0 Score=1104.07 Aligned_cols=495 Identities=43% Similarity=0.678 Sum_probs=472.4
Q ss_pred CCCEEEEECCCCCEEEEEEEECCEEEEEEECCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCCC
Q ss_conf 98526896528960799999899899999607334604287879899783638823135327897713022213712102
Q gi|254780751|r 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQ 80 (723)
Q Consensus 1 M~k~~lI~~~~~~e~Rvav~e~g~l~e~~~e~~~~~~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~~ 80 (723)
| |+||||+++|+|||||+++||+|+||++|+.+..+++||||+|||+||+|||||||||||.+|+||||++||+|+||+
T Consensus 8 M-k~ilI~~~~~~e~RvAlle~g~l~e~~ie~~~~~~~vGnIY~GrV~~v~pgl~AAFVdiG~~k~gFL~~~di~~~~~~ 86 (517)
T 2bx2_L 8 M-KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFP 86 (517)
T ss_dssp C-EEEEEECSCTTCEEEEEEETTEEEEEEEECSSSCCCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGGCC
T ss_pred C-CCEEEECCCCCEEEEEEEECCEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEHHHCCHHHCC
T ss_conf 1-014887589971899999999999999942888888798899999423798866999618997148886884845415
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89889999999888631111100000001112233444334454222233445543322223432112211121100001
Q gi|254780751|r 81 IPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDV 160 (723)
Q Consensus 81 ip~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (723)
.+.
T Consensus 87 ~~~----------------------------------------------------------------------------- 89 (517)
T 2bx2_L 87 ANY----------------------------------------------------------------------------- 89 (517)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCC-----------------------------------------------------------------------------
T ss_conf 552-----------------------------------------------------------------------------
Q ss_pred CCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 22344442133106888579998403332345641012334576523442278875124204688689999999998630
Q gi|254780751|r 161 PKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 (723)
Q Consensus 161 ~~~~~~~~~i~~~lk~gq~ilVQV~ke~~~~Kga~lT~~isl~Gry~Vl~P~~~~~~~iSrki~~~~~r~~l~~~~~~~~ 240 (723)
...++++|+++|++||.|||||+|||+++|||+||++|||+|||+||||+.+ ++++|+||.+.++|++|+.++..+.
T Consensus 90 --~~~~~~~I~~~l~~Gq~ilVQV~ke~~~~Kg~~lT~~Isl~GrylVl~P~~~-~i~~sski~~~~er~~l~~~l~~~~ 166 (517)
T 2bx2_L 90 --SAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNP-RAGGISRRIEGDDRTELKEALASLE 166 (517)
T ss_dssp ------CCCGGGTCCTTCEEEEEEEECCCTTCCCEEESSCCEECSSEEEETTCT-TCCEECTTCC------HHHHHTTSC
T ss_pred --CCCCCCCHHHCCCCCCEEEEEECCCCCCCCCCCEECEEEECCCCEEECCCCC-CCCEECCCCCHHHHHHHHHHHHHHC
T ss_conf --2245655544078999899997246767777655240640787468745788-6111504477588999999998635
Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEECCCCCHHHH
Q ss_conf 02587169985045575799999999999999987764201432212345645888888752376631111035320366
Q gi|254780751|r 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYRE 320 (723)
Q Consensus 241 ~~~~~G~IiRT~a~~~~~~~l~~d~~~L~~~w~~i~~~~~~~~~p~li~~~~~~~~~~ird~~~~~~~~i~vd~~~~~~~ 320 (723)
.|+++|+|+||+|++++.++|..|+.+|..+|+.|.+.+...++|+|||++.+++.+++||+++.++..|+||+...|..
T Consensus 167 ~pe~~G~IiRT~a~~~~~~~l~~d~~~L~~~w~~i~~~~~~~~~P~ll~~~~~~~~r~lrd~~~~~~~~i~vd~~~~~~~ 246 (517)
T 2bx2_L 167 LPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 246 (517)
T ss_dssp CCTTCEEEECGGGGGCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCEEEECCCCHHHHHHHHHCCTTEEEEEESCHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHCCHHHHCCCCCCHHHHHH
T ss_conf 89884389987556999999999999999999888875424898637862874999999986360332233676889999
Q ss_pred HHHHHHH-HHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCHHHH
Q ss_conf 7888987-631012112201344203567769999999842221436786499832880699982375544455511479
Q gi|254780751|r 321 AKDFMKL-LMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 (723)
Q Consensus 321 ~~~~~~~-~~p~~~~~v~~~~~~~~lf~~y~ie~~i~~~~~~~V~L~sGG~lvIe~TEALt~IDVNSG~~~~~~~~e~t~ 399 (723)
+++|+.. .+|++..++++|.+..|||+.|+|+.||+.+|+++||||||||||||+||||||||||||+++++++.++|+
T Consensus 247 ~~~~~~~~~~~~~~~~v~~y~~~~~lF~~y~Ie~~I~~ll~~~V~L~sGG~ivIe~TEALt~IDVNSG~~~~~~~~eet~ 326 (517)
T 2bx2_L 247 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETA 326 (517)
T ss_dssp HHHHHHHTTCHHHHTTEEECCCSSCHHHHTTCHHHHHHTTCSEEECTTSCEEEEEECSSCEEEEEECCC----CCHHHHH
T ss_pred HHHHHHHCCCCCCCCEEEEECCCCCHHHHHCCHHHHHHHHCCCEECCCCCEEEEECCCEEEEEEECCCCCCCCCCHHHHH
T ss_conf 87531101586311648996699896776361999998643654338886899970440489870476645677778889
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCCCCCHHHH
Q ss_conf 99999999999998731036863896033479888899999999997312787289986048614898515666301121
Q gi|254780751|r 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 (723)
Q Consensus 400 l~tNleAA~EIaRQlRLRnlgGiIvIDFIdM~~~~~~~~v~~~l~~~l~~D~~~~~v~~it~lGLlEltRkR~r~sl~e~ 479 (723)
|+||||||+||||||||||||||||||||||++.+|++.|++.|+++|++|+++|+|++||+||||||||||.|+||.++
T Consensus 327 l~tNleAa~EIaRQLRLRnigGiIvIDFIdM~~~~~~~~v~~~l~~~l~~D~~~~~v~~~T~lGLvEmTRkR~r~sl~~~ 406 (517)
T 2bx2_L 327 FNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGES 406 (517)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEECCCCSSHHHHHHHHHHHHHHTTTCSSCEEEEEECTTSEEEEEECCCSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEEEECCCCCCCHHHH
T ss_conf 99999999999999874478752999725767587899999999999841998503356677640899626668772322
Q ss_pred HCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHH-HCCEEEEEECCCC
Q ss_conf 002367546537860611468998878899973036431013576999998730237999999998-4887999847877
Q gi|254780751|r 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEAR-FGVSINVVIGIEL 558 (723)
Q Consensus 480 ~~~~c~~c~g~g~~~~~~~~~~~~~r~i~~~~~~~~~~~i~v~~~~~va~~lln~kr~~l~~lE~~-~~~~I~i~~d~~l 558 (723)
++++||+|+|+|+|+|.++++++|+|.|++.+.+.+.+.+.+.+||+|+.||+|+++.+|.++|.+ ++++|.|.+|++|
T Consensus 407 ~~~~Cp~C~G~G~v~s~~~~~~~i~r~i~~~~~~~~~~~i~i~~~~~v~~~l~~~~~~~l~~~e~~~~~~~i~i~~~~~l 486 (517)
T 2bx2_L 407 SHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 486 (517)
T ss_dssp HCCCCSSSSSSSCCCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECHHHHHHHTTTTHHHHHHHHHHTTTCEEEEEECTTC
T ss_pred CCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 14348986886798788999999999999998766885799998999999998422999999999875917999847888
Q ss_pred CCCCEEEEECCCCCCCCC
Q ss_conf 886338971554433333
Q gi|254780751|r 559 ADKLFYIEKGSPVQALVN 576 (723)
Q Consensus 559 ~~~~f~Ier~~~~~~~~~ 576 (723)
+.++|.|.+.+..+....
T Consensus 487 ~~~~~~i~~~~~~~~~~~ 504 (517)
T 2bx2_L 487 ETPHYHVLRVRKGEETPT 504 (517)
T ss_dssp CTTCCEEEEEETTCCCCC
T ss_pred CCCCEEEEECCCCCCCCC
T ss_conf 777529998568985565