HHsearch results for GI: 254780751 and protein with PDBid: 2c35_B

>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1

Probab=92.50  E-value=0.35  Score=25.80  Aligned_cols=54  Identities=19%  Similarity=0.218  Sum_probs=35.9

Q ss_pred             CEEEEEEECCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHC-CCCCC
Q ss_conf             9899999607334604287879899783638823135327897713022213-71210
Q gi|254780751|r   23 NRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI-HPDYY   79 (723)
Q Consensus        23 g~l~e~~~e~~~~~~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei-~~~y~   79 (723)
                      .......++-.--+...|.+|.|+|+.|.+.  +.||++|.-. ++++...+ .++||
T Consensus        65 ~~~~~v~~~~~v~~p~~Ge~~~g~V~~v~~~--Gi~v~~~~~~-~~~~~~~~~~~~~~  119 (172)
T 2c35_B           65 FVLYPVKYKAIVFRPFKGEVVDAVVTQVNKV--GLFTEIGPMS-CFISRHSIPSEMEF  119 (172)
T ss_dssp             SEEEEEEEEEEEECCCTTCEEEEEEEEEETT--EEEEEETTEE-EEEEGGGSCTTEEE
T ss_pred             CEEEEEEEEEEEEECCCCCEEEEEEEEECCC--EEEEEECCCE-EEEEEECCCCCCCE
T ss_conf             4899887899998156897999999987377--4999965807-98874104787614