HHSEARCH alignment of GI: 254780751 and SCOP domain: d1e3pa2

Alignment

Probab=97.00  E-value=7.9e-05  Score=49.50  Aligned_cols=32  Identities=22%  Similarity=0.263  Sum_probs=28.6

Q ss_pred             EEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCC
Q ss_conf             8997836388231353278977130222137121
Q gi|254780751|r   45 AKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDY   78 (723)
Q Consensus        45 G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y   78 (723)
                      |+|++|.|-  +|||+++.+..||||.+||.+.+
T Consensus         1 G~V~~i~~f--G~FV~l~~g~~Glihiseis~~~   32 (62)
T d1e3pa2           1 GSVVKTTTF--GAFVSLLPGKDGLLHISQIRKLA   32 (62)
T ss_dssp             CBEEECC-C--SCEECCC---CCCCC--------
T ss_pred             CEEEEEEEC--EEEEEECCCCEEEEEHHHCCCCC
T ss_conf             999999702--28999569936799989916343

SCOP domain information

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase
species: Streptomyces antibioticus [TaxId: 1890]