HHSEARCH alignment of GI: 254780751 and SCOP domain: d1go3e1

Alignment
>d1go3e1 b.40.4.5 (E:79-184) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=97.66  E-value=3.9e-05  Score=51.64  Aligned_cols=40  Identities=23%  Similarity=0.287  Sum_probs=36.2

Q ss_pred             CCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCCC
Q ss_conf             4287879899783638823135327897713022213712102
Q gi|254780751|r   38 IKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQ   80 (723)
Q Consensus        38 ~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~~   80 (723)
                      -+|.||-|+|++|.+-  +|||+++ +-.||+|.+++..+||.
T Consensus         2 ~~gei~~g~V~~v~~~--G~FVel~-~ieGlv~~s~l~~~~~~   41 (106)
T d1go3e1           2 EMYELIEGEVVDVVEF--GSFVRLG-PLDGLIHVSQIMDDYVS   41 (106)
T ss_dssp             CTTCEEEEEEEEEETT--EEEEECS-SSEEEEEGGGSCSSCEE
T ss_pred             CCCCEEEEEEEEEEEE--EEEEEEE-CEEEEEEEECCCCCEEE
T ss_conf             8999999999999603--8999960-86989980003676065


SCOP domain information

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: C-terminal domain of RNA polymerase II subunit RBP7 (RpoE)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]