HHSEARCH alignment of GI: 254780751 and SCOP domain: d1hh2p1

Alignment

Probab=94.83  E-value=0.035  Score=31.07  Aligned_cols=36  Identities=31%  Similarity=0.294  Sum_probs=31.1

Q ss_pred             CCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHC
Q ss_conf             604287879899783638823135327897713022213
Q gi|254780751|r   36 KQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI   74 (723)
Q Consensus        36 ~~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei   74 (723)
                      ....|.|.-|.|.++.++  ..+||+| .-.|+||-+|.
T Consensus         5 ~~~~geiv~G~V~r~~~~--~~~Vdlg-~~eaiLp~~eq   40 (72)
T d1hh2p1           5 SELKGTVTTAEVIRVMGE--WADIRIG-KLETRLPKKEW   40 (72)
T ss_dssp             TCCTTCEEEEEEEEECSS--EEEEEET-TEEEEEEGGGS
T ss_pred             HHCCCCEEEEEEEEECCC--CEEEEEC-CCEEECCHHHC
T ss_conf             546696899999998389--8999989-91787898995

SCOP domain information

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: S1 domain of NusA
species: Thermotoga maritima [TaxId: 2336]