HHSEARCH alignment of GI: 254780751 and SCOP domain: d1wi5a_

Alignment
>d1wi5a_ b.40.4.5 (A:) S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.67  E-value=2.5e-05  Score=52.99  Aligned_cols=82  Identities=20%  Similarity=0.179  Sum_probs=61.6

Q ss_pred             CCCCCCCEEEEEEEEECCCCCEEEEEEC-CCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             4604287879899783638823135327-897713022213712102898899999998886311111000000011122
Q gi|254780751|r   35 KKQIKGNIYLAKVTRVEPSLQAAFVDYG-GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVT  113 (723)
Q Consensus        35 ~~~~~GnIY~G~V~~V~p~lqAAFVdiG-~~k~gFL~~~ei~~~y~~ip~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~  113 (723)
                      ..-..|.|+.|+|++|.+.  .+||+|| .+-.||||++|+..+|..                                 
T Consensus        17 ~~l~~G~iv~G~V~~i~~~--G~~V~lg~~~~~G~l~~~els~~~~~---------------------------------   61 (119)
T d1wi5a_          17 EALKPGMLLTGTVSSLEDH--GYLVDIGVDGTRAFLPLLKAQEYIRQ---------------------------------   61 (119)
T ss_dssp             TTCCTTCEEEEEEEEECSS--EEEEECCCSSCEEEEEHHHHHHHHHH---------------------------------
T ss_pred             HHCCCCCEEEEEEEEEECC--EEEEEEECCCCCEEEEHHHHCCCCCC---------------------------------
T ss_conf             3368998899999987141--89999842665528769993212133---------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCCCC
Q ss_conf             33444334454222233445543322223432112211121100001223444421331068885799984033323456
Q gi|254780751|r  114 IPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKG  193 (723)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lk~gq~ilVQV~ke~~~~Kg  193 (723)
                                                                            ..-.+.+++||.|.|-|.+-....+-
T Consensus        62 ------------------------------------------------------~~~~~~~~vGq~v~~~V~~vd~~~~~   87 (119)
T d1wi5a_          62 ------------------------------------------------------KNKGAKLKVGQYLNCIVEKVKGNGGV   87 (119)
T ss_dssp             ------------------------------------------------------HSSSCCCCTTCEEEEEEEECCTTSCE
T ss_pred             ------------------------------------------------------CCHHHHCCCCEEEEEEEEEEECCCCE
T ss_conf             ------------------------------------------------------89879434546999999998089978


Q ss_pred             CCCCCCCCCCCC
Q ss_conf             410123345765
Q gi|254780751|r  194 AAVTTYLSLAGR  205 (723)
Q Consensus       194 a~lT~~isl~Gr  205 (723)
                      ..||..-+....
T Consensus        88 i~LS~k~~~~~~   99 (119)
T d1wi5a_          88 VSLSVGHSEVST   99 (119)
T ss_dssp             EEEECCCCCSCC
T ss_pred             EEEEECHHHHHH
T ss_conf             999863787415


SCOP domain information

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: S1-domain of RRP5 protein homolog (PDCD11, KIAA0185)
species: Human (Homo sapiens) [TaxId: 9606]