HHSEARCH alignment of GI: 254780751 and SCOP domain: d1y14b1

Alignment
>d1y14b1 b.40.4.5 (B:81-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=95.26  E-value=0.02  Score=32.77  Aligned_cols=38  Identities=18%  Similarity=0.170  Sum_probs=33.2

Q ss_pred             CCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCC
Q ss_conf             42878798997836388231353278977130222137121
Q gi|254780751|r   38 IKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDY   78 (723)
Q Consensus        38 ~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y   78 (723)
                      .+|.++-|+|++|.+  .++||++|.- .||+|.+.+..+|
T Consensus         2 f~Gev~~g~I~~v~~--~G~fv~lg~~-eg~i~~~~l~~~~   39 (91)
T d1y14b1           2 FKGEVVDGTVVSCSQ--HGFEVQVGPM-KVFVTKHLMPQDL   39 (91)
T ss_dssp             CTTCEEEEEEEEEET--TEEEEEETTE-EEEEEGGGSCTTC
T ss_pred             CCCCEEEEEEEEEEE--EEEEEEECCE-EEEEEHHHCCCCE
T ss_conf             889999999998981--6899997584-9999954447633


SCOP domain information

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: C-terminal domain of RNA polymerase II subunit RBP7 (RpoE)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]