PSIBLAST alignment of GI: 254780751 and protein with PDB id: 2vrt
>gi|194368580|pdb|2VRT|A Chain A, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna Fragments - Catalytic Domain Length = 509
>gi|194368581|pdb|2VRT|B Chain B, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna Fragments - Catalytic Domain Length = 509
Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats.
Identities = 184/499 (36%), Positives = 281/499 (56%), Gaps = 8/499 (1%)
Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
+ A+ D D+ I + ++ A I E S+ +A D +
Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71
Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
+ I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131
Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190
Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250
Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310
Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370
Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430
Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
L+ + + YLLN+KR+ + E R GV +V ++ +++ +
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490
Query: 570 PVQALVNTGHKVGSDSQAP 588
+ + + +
Sbjct: 491 KGEETPTLSYMLPKLHEEA 509