PSIBLAST alignment of GI: 254780751 and protein with PDB id: 2vrt

>gi|194368580|pdb|2VRT|A Chain A, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna Fragments - Catalytic Domain Length = 509
>gi|194368581|pdb|2VRT|B Chain B, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna Fragments - Catalytic Domain Length = 509
 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 184/499 (36%), Positives = 281/499 (56%), Gaps = 8/499 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAP 588
             +      + +    +  
Sbjct: 491 KGEETPTLSYMLPKLHEEA 509