RPSBLAST alignment for GI: 254780751 and conserved domain: TIGR00757

>gnl|CDD|162024 TIGR00757, RNaseEG, ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome. Length = 414

 Score =  395 bits (1018), Expect = e-110
 Identities = 165/362 (45%), Positives = 240/362 (66%), Gaps = 6/362 (1%)

Query: 144 DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLA 203
           D+  N E +         K+      I E+++  Q +LVQ+VKE RGNKGA +TT +SL 
Sbjct: 59  DIGPNYECL----APAEAKREAG-PSISELLRPGQSVLVQVVKEPRGNKGARLTTDISLP 113

Query: 204 GRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKR 263
           GRY VLMPN S    +SR+I +  +R+ LK++ R  E+P GMG+I+RTA    ++  + +
Sbjct: 114 GRYLVLMPNNSHV-GVSRRIESGEERERLKKLLRSEELPEGMGLIIRTAAEGASEEALIK 172

Query: 264 DFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKD 323
           D E+L+R W+ ++E A    AP L+Y E ++IKR IRD    DI EI++  ++ Y EAK+
Sbjct: 173 DLEFLLRKWEKIKEKAQKRPAPCLIYGEPDIIKRVIRDYLDTDIKEILIDSKEIYEEAKE 232

Query: 324 FMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383
           F++L  P     ++ Y    P+F    IE Q+D   Q +V LPS GY++I+QTEAL +ID
Sbjct: 233 FIQLYAPELVSKLKLYRGSDPLFEGFQIEKQIDKATQRKVWLPSGGYIVIDQTEALTTID 292

Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
           VNSGR T    +E+TAL TNLEAA+EIARQLRLR+L G+I++DFIDM+ +KN R V ++L
Sbjct: 293 VNSGRFTGGGNLEETALNTNLEAAKEIARQLRLRNLGGIIIIDFIDMKSEKNQRRVLERL 352

Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503
           KE+L++DRAR+Q+  IS FGL+EM+R+R+R S++E    VC +C G G +++  +V   I
Sbjct: 353 KEALRRDRARIQISGISEFGLVEMTRKRLRESLMEVLGTVCPHCSGTGIVKTSETVLYEI 412

Query: 504 LR 505
            R
Sbjct: 413 ER 414