RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780751|ref|YP_003065164.1| ribonuclease E [Candidatus Liberibacter asiaticus str. psy62] (723 letters) >d1smxa_ b.40.4.5 (A:) S1-domain of Ribonuclease E {Escherichia coli [TaxId: 562]} Length = 87 Score = 62.3 bits (151), Expect = 1e-10 Identities = 29/66 (43%), Positives = 38/66 (57%) Query: 41 NIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDS 100 NIY K+TR+EPSL+AAFVDYG RHGFLP EI +Y+ +S + + + Sbjct: 2 NIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQE 61 Query: 101 EAVADD 106 V D Sbjct: 62 VIVQID 67 Score = 54.6 bits (131), Expect = 3e-08 Identities = 22/44 (50%), Positives = 32/44 (72%) Query: 161 PKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Sbjct: 43 NYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAG 86 >d1vjta1 c.2.1.5 (A:-1-191) Putative alpha-glucosidase TM0752 {Thermotoga maritima [TaxId: 2336]} Length = 193 Score = 29.4 bits (65), Expect = 0.96 Identities = 13/106 (12%), Positives = 35/106 (33%), Gaps = 6/106 (5%) Query: 252 AGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEII 311 AG+ R +++ D L + + V + L ++ + +L + + Sbjct: 10 AGSVRFALQLVGDIAQTEELSREDTHIYMMDVHERRLNASYILARKYVEELNS-PVKIVK 68 Query: 312 VSGEKGYREAKDFMKLLMPSYA-----RIVRQYEDPHPIFFRSGIE 352 S + DF+ Y +++++ + + G Sbjct: 69 TSSLDEAIDGADFIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYY 114 >d1knva_ c.52.1.7 (A:) Restriction endonuclease Bse634I {Bacillus stearothermophilus [TaxId: 1422]} Length = 290 Score = 28.0 bits (62), Expect = 2.5 Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 3/45 (6%) Query: 262 KRDFEYLMRLWDNV---RELALNSVAPHLVYEEGNLIKRAIRDLY 303 K +F+Y + V + AL + A H + + +RA+ D++ Sbjct: 228 KAEFKYYGASSEPVSKADDDALQTAATHTIVNVNSTPERAVDDIF 272 >d1a6fa_ d.14.1.2 (A:) RNase P protein {Bacillus subtilis [TaxId: 1423]} Length = 113 Score = 27.9 bits (62), Expect = 2.8 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 7/62 (11%) Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMG-------VILRTAGASRTKIEIKRDFEYL 268 G ++S+KI N V R +K + R + +I R + T E K+ ++L Sbjct: 46 GLSVSKKIGNAVMRNRIKRLIRQAFLEEKERLKEKDYIIIARKPASQLTYEETKKSLQHL 105 Query: 269 MR 270 R Sbjct: 106 FR 107 >d1m4za_ b.34.12.1 (A:) Origin-recognition complex protein 120kDa subunit, Orc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 217 Score = 27.6 bits (61), Expect = 3.7 Identities = 11/35 (31%), Positives = 16/35 (45%) Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSD 652 I++ + G I ++R RRR A H SD Sbjct: 15 EIITTDEQGNIIDGGQKRLRRRGAKTEHYLKRSSD 49 >d1e3pa2 b.40.4.5 (A:656-717) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Streptomyces antibioticus [TaxId: 1890]} Length = 62 Score = 27.0 bits (60), Expect = 5.8 Identities = 8/47 (17%), Positives = 14/47 (29%), Gaps = 2/47 (4%) Query: 46 KVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKE 92 V + AFV + G L +I + + +L Sbjct: 2 SVVKTTTF--GAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGV 46 >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} Length = 358 Score = 26.9 bits (58), Expect = 6.5 Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%) Query: 286 HLVYEEGNLIKR-AIRDLYCKDISEIIVSGEKGYR 319 H + K A+ L D+SE+I GYR Sbjct: 20 HASVDLQQRSKSAALARLMKHDVSEVIADVPWGYR 54 >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 146 Score = 26.6 bits (58), Expect = 6.8 Identities = 18/102 (17%), Positives = 30/102 (29%), Gaps = 7/102 (6%) Query: 190 GNKGAAVTTYLSLAGRYSVLM-----PNTSKGETISRKITNPVDRKNLKEIARGLEVPAG 244 GN GAAV L G + K + I + + + A Sbjct: 10 GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALAD 69 Query: 245 MGVILRTAGASRTKIEIKRD--FEYLMRLWDNVRELALNSVA 284 V++ T G + + + F L V+ + N Sbjct: 70 ADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKE 111 >d1fcqa_ c.1.8.9 (A:) Bee venom hyaluronidase {Honeybee (Apis mellifera) [TaxId: 7460]} Length = 321 Score = 26.0 bits (57), Expect = 10.0 Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 1/29 (3%) Query: 400 LQTNLE-AAEEIARQLRLRDLAGLIVVDF 427 L +L+ + + Q+ + G+ V+DF Sbjct: 75 LTKHLQVFRDHLINQIPDKSFPGVGVIDF 103 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.316 0.132 0.369 Gapped Lambda K H 0.267 0.0685 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 2,633,963 Number of extensions: 127045 Number of successful extensions: 426 Number of sequences better than 10.0: 1 Number of HSP's gapped: 421 Number of HSP's successfully gapped: 19 Length of query: 723 Length of database: 2,407,596 Length adjustment: 92 Effective length of query: 631 Effective length of database: 1,144,436 Effective search space: 722139116 Effective search space used: 722139116 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 56 (25.4 bits)